Query 002830
Match_columns 875
No_of_seqs 501 out of 3227
Neff 6.8
Searched_HMMs 46136
Date Thu Mar 28 11:39:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002830.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002830hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0039 Ferric reductase, NADH 100.0 6E-100 1E-104 903.6 36.6 605 204-875 2-646 (646)
2 PLN02631 ferric-chelate reduct 100.0 4.2E-57 9.1E-62 533.6 39.4 336 348-784 150-492 (699)
3 PLN02844 oxidoreductase/ferric 100.0 5.2E-56 1.1E-60 526.8 47.8 438 347-875 152-720 (722)
4 PLN02292 ferric-chelate reduct 100.0 1.9E-56 4E-61 529.2 41.9 424 348-875 167-700 (702)
5 COG4097 Predicted ferric reduc 100.0 7.1E-39 1.5E-43 341.7 32.9 382 356-875 46-435 (438)
6 cd06186 NOX_Duox_like_FAD_NADP 100.0 4.6E-33 1E-37 289.5 23.7 205 555-875 2-210 (210)
7 cd06195 FNR1 Ferredoxin-NADP+ 99.9 1.6E-26 3.5E-31 245.8 24.2 225 554-875 2-241 (241)
8 cd06216 FNR_iron_sulfur_bindin 99.9 2.4E-26 5.2E-31 244.8 25.1 232 539-875 3-243 (243)
9 cd06184 flavohem_like_fad_nad_ 99.9 3.6E-26 7.8E-31 243.9 25.9 231 549-875 6-243 (247)
10 cd06189 flavin_oxioreductase N 99.9 2.6E-26 5.6E-31 241.6 24.2 219 553-875 2-224 (224)
11 cd06197 FNR_like_2 FAD/NAD(P) 99.9 1.8E-26 4E-31 242.5 22.2 192 556-875 2-219 (220)
12 cd06198 FNR_like_3 NAD(P) bind 99.9 4.3E-26 9.2E-31 238.5 23.1 207 562-875 7-215 (216)
13 PRK08051 fre FMN reductase; Va 99.9 6E-26 1.3E-30 240.4 23.8 223 550-875 3-229 (232)
14 PF08414 NADPH_Ox: Respiratory 99.9 4.1E-28 8.8E-33 214.8 4.8 100 124-226 1-100 (100)
15 cd06215 FNR_iron_sulfur_bindin 99.9 1.1E-25 2.4E-30 237.5 23.9 225 553-875 2-231 (231)
16 cd06212 monooxygenase_like The 99.9 1.7E-25 3.7E-30 236.5 25.1 225 551-875 2-231 (232)
17 cd06210 MMO_FAD_NAD_binding Me 99.9 1.9E-25 4.1E-30 236.7 25.1 224 551-875 3-235 (236)
18 cd06191 FNR_iron_sulfur_bindin 99.9 1.4E-25 3E-30 237.1 23.9 226 553-875 2-231 (231)
19 cd06209 BenDO_FAD_NAD Benzoate 99.9 2.1E-25 4.5E-30 235.2 25.2 221 551-875 3-227 (228)
20 cd06213 oxygenase_e_transfer_s 99.9 1.7E-25 3.7E-30 235.8 24.5 222 551-875 2-227 (227)
21 cd06194 FNR_N-term_Iron_sulfur 99.9 2E-25 4.3E-30 234.4 23.4 216 555-875 2-221 (222)
22 cd06217 FNR_iron_sulfur_bindin 99.9 2.8E-25 6E-30 235.0 24.3 228 550-875 2-235 (235)
23 cd06190 T4MO_e_transfer_like T 99.9 2.5E-25 5.4E-30 235.1 23.3 227 555-875 2-231 (232)
24 cd06187 O2ase_reductase_like T 99.9 3.1E-25 6.7E-30 232.9 23.8 220 555-875 2-224 (224)
25 cd06214 PA_degradation_oxidore 99.9 5.7E-25 1.2E-29 233.6 25.6 230 550-875 2-240 (241)
26 cd06211 phenol_2-monooxygenase 99.9 5.8E-25 1.2E-29 233.6 24.8 227 550-875 7-238 (238)
27 cd06188 NADH_quinone_reductase 99.9 3.5E-25 7.5E-30 241.5 22.9 231 549-875 9-283 (283)
28 cd00322 FNR_like Ferredoxin re 99.9 5.6E-25 1.2E-29 230.0 22.5 208 557-860 3-213 (223)
29 TIGR02160 PA_CoA_Oxy5 phenylac 99.9 1.4E-24 3E-29 243.9 25.4 231 550-875 2-241 (352)
30 PRK07609 CDP-6-deoxy-delta-3,4 99.9 1.6E-24 3.5E-29 242.2 25.0 226 548-875 101-332 (339)
31 PRK10684 HCP oxidoreductase, N 99.9 2.1E-24 4.6E-29 240.5 24.7 225 550-875 10-237 (332)
32 cd06196 FNR_like_1 Ferredoxin 99.9 1.6E-24 3.5E-29 226.8 21.8 203 551-860 2-208 (218)
33 PRK13289 bifunctional nitric o 99.9 8.3E-24 1.8E-28 241.4 26.0 234 547-875 152-392 (399)
34 PRK11872 antC anthranilate dio 99.9 5.2E-24 1.1E-28 238.0 23.7 224 549-875 106-335 (340)
35 PF08030 NAD_binding_6: Ferric 99.9 1.1E-24 2.4E-29 216.0 14.4 153 671-858 1-156 (156)
36 cd06183 cyt_b5_reduct_like Cyt 99.9 1.9E-23 4.2E-28 220.5 23.9 216 553-861 2-225 (234)
37 cd06221 sulfite_reductase_like 99.9 1.1E-23 2.4E-28 226.0 22.3 206 555-861 2-213 (253)
38 PRK00054 dihydroorotate dehydr 99.9 2.1E-23 4.6E-28 223.4 23.8 210 549-874 4-213 (250)
39 PRK10926 ferredoxin-NADP reduc 99.9 3E-23 6.5E-28 222.0 24.7 217 549-860 4-228 (248)
40 PRK08345 cytochrome-c3 hydroge 99.9 3.6E-23 7.8E-28 226.3 25.2 224 549-861 5-235 (289)
41 cd06218 DHOD_e_trans FAD/NAD b 99.9 3.2E-23 6.9E-28 221.6 23.9 209 555-875 2-213 (246)
42 PRK05713 hypothetical protein; 99.9 4.3E-23 9.2E-28 228.1 22.6 212 550-875 92-308 (312)
43 cd06185 PDR_like Phthalate dio 99.9 9.4E-23 2E-27 212.3 22.6 202 556-875 2-210 (211)
44 cd06192 DHOD_e_trans_like FAD/ 99.9 1.4E-22 3E-27 216.0 22.9 144 555-764 2-147 (243)
45 PLN03116 ferredoxin--NADP+ red 99.9 2.8E-22 6.1E-27 221.0 25.9 221 550-860 25-281 (307)
46 PRK05464 Na(+)-translocating N 99.9 1.7E-22 3.6E-27 231.4 24.2 230 550-875 134-407 (409)
47 cd06219 DHOD_e_trans_like1 FAD 99.9 2.9E-22 6.3E-27 214.4 23.6 144 553-765 2-148 (248)
48 PRK08221 anaerobic sulfite red 99.9 2.7E-22 5.9E-27 216.5 23.2 207 550-861 8-215 (263)
49 cd06220 DHOD_e_trans_like2 FAD 99.9 3E-22 6.5E-27 212.2 22.8 200 552-875 1-200 (233)
50 cd06208 CYPOR_like_FNR These f 99.9 9.6E-22 2.1E-26 214.8 26.1 222 550-861 9-262 (286)
51 COG1018 Hmp Flavodoxin reducta 99.9 1.4E-21 2.9E-26 210.3 26.2 222 548-875 4-230 (266)
52 TIGR01941 nqrF NADH:ubiquinone 99.9 4.6E-22 1E-26 227.4 21.9 230 550-875 130-403 (405)
53 PTZ00274 cytochrome b5 reducta 99.9 1.3E-21 2.9E-26 216.4 24.7 225 546-856 49-281 (325)
54 TIGR02911 sulfite_red_B sulfit 99.9 9.3E-22 2E-26 212.1 22.6 206 551-861 7-213 (261)
55 PRK05802 hypothetical protein; 99.9 1.6E-21 3.5E-26 215.7 24.4 150 550-765 65-223 (320)
56 PRK06222 ferredoxin-NADP(+) re 99.9 1.3E-21 2.9E-26 213.1 23.0 199 553-861 3-204 (281)
57 cd06182 CYPOR_like NADPH cytoc 99.9 5.3E-21 1.1E-25 206.8 23.4 207 561-861 14-238 (267)
58 cd06200 SiR_like1 Cytochrome p 99.9 1.1E-20 2.3E-25 202.0 23.5 151 563-781 17-176 (245)
59 PLN03115 ferredoxin--NADP(+) r 99.9 1.5E-20 3.2E-25 210.4 24.8 226 551-862 92-343 (367)
60 PTZ00319 NADH-cytochrome B5 re 99.9 1.7E-20 3.7E-25 206.1 23.2 221 546-860 30-290 (300)
61 cd06201 SiR_like2 Cytochrome p 99.8 1.1E-19 2.5E-24 198.7 24.9 210 548-861 44-268 (289)
62 TIGR03224 benzo_boxA benzoyl-C 99.8 1.4E-19 3.1E-24 206.7 24.7 167 550-781 143-335 (411)
63 COG0543 UbiB 2-polyprenylpheno 99.8 1.6E-19 3.4E-24 193.7 23.6 203 551-862 9-216 (252)
64 KOG0534 NADH-cytochrome b-5 re 99.8 3.9E-19 8.5E-24 190.4 23.1 223 548-863 50-279 (286)
65 PLN02252 nitrate reductase [NA 99.8 2.9E-19 6.3E-24 219.3 24.8 223 547-862 632-880 (888)
66 PF08022 FAD_binding_8: FAD-bi 99.8 4.4E-22 9.4E-27 185.2 -1.7 100 550-664 2-104 (105)
67 cd06193 siderophore_interactin 99.8 3.6E-18 7.7E-23 181.4 21.3 115 555-693 2-142 (235)
68 PRK12779 putative bifunctional 99.8 3.2E-18 6.9E-23 212.7 22.8 213 548-861 647-870 (944)
69 PRK12778 putative bifunctional 99.8 4.8E-18 1E-22 208.8 23.3 199 553-861 3-204 (752)
70 PTZ00306 NADH-dependent fumara 99.8 3.9E-17 8.5E-22 208.1 24.8 224 547-862 912-1153(1167)
71 PRK12775 putative trifunctiona 99.7 1E-16 2.2E-21 201.0 22.5 199 553-862 3-205 (1006)
72 cd06199 SiR Cytochrome p450- l 99.6 3.5E-14 7.5E-19 160.2 15.7 188 574-861 129-331 (360)
73 cd06207 CyPoR_like NADPH cytoc 99.6 6.4E-14 1.4E-18 159.3 17.6 179 592-862 161-354 (382)
74 cd06206 bifunctional_CYPOR The 99.5 2E-13 4.4E-18 155.4 17.8 190 578-862 148-352 (384)
75 TIGR01931 cysJ sulfite reducta 99.5 1E-13 2.2E-18 165.7 15.1 126 575-767 367-506 (597)
76 KOG0044 Ca2+ sensor (EF-Hand s 99.5 9.2E-14 2E-18 141.4 9.1 117 139-269 14-134 (193)
77 cd06203 methionine_synthase_re 99.4 2.3E-12 5E-17 147.3 17.8 135 592-781 171-315 (398)
78 PF01794 Ferric_reduct: Ferric 99.4 6.3E-13 1.4E-17 126.6 10.5 122 355-507 2-124 (125)
79 PRK06214 sulfite reductase; Pr 99.4 8.3E-12 1.8E-16 146.1 19.4 126 592-781 313-451 (530)
80 cd06204 CYPOR NADPH cytochrome 99.4 1E-11 2.2E-16 142.8 18.6 198 592-861 175-387 (416)
81 cd06202 Nitric_oxide_synthase 99.4 1.7E-11 3.8E-16 140.4 19.1 182 593-861 175-373 (406)
82 PRK10953 cysJ sulfite reductas 99.3 2.8E-11 6.1E-16 144.3 16.9 126 575-767 370-509 (600)
83 PF00175 NAD_binding_1: Oxidor 99.3 1.9E-11 4.2E-16 113.5 11.3 107 676-855 1-109 (109)
84 COG5126 FRQ1 Ca2+-binding prot 99.3 1.4E-11 3E-16 121.6 10.8 101 153-266 17-123 (160)
85 COG2871 NqrF Na+-transporting 99.3 3.8E-11 8.2E-16 125.4 13.6 216 564-862 149-398 (410)
86 KOG0034 Ca2+/calmodulin-depend 99.2 2.4E-11 5.2E-16 123.8 9.4 102 153-267 30-136 (187)
87 PF00970 FAD_binding_6: Oxidor 99.1 2.1E-10 4.5E-15 105.1 7.9 91 551-664 1-97 (99)
88 PRK06567 putative bifunctional 99.0 4.7E-09 1E-13 128.6 14.3 117 551-694 792-913 (1028)
89 KOG0027 Calmodulin and related 98.8 1.9E-08 4.1E-13 99.8 10.9 101 153-265 5-115 (151)
90 PTZ00184 calmodulin; Provision 98.7 7.6E-08 1.6E-12 93.7 11.1 100 153-264 8-113 (149)
91 PTZ00183 centrin; Provisional 98.7 1.4E-07 3E-12 93.1 11.6 100 153-264 14-119 (158)
92 KOG3378 Globins and related he 98.6 1.1E-07 2.4E-12 99.3 8.7 129 547-696 147-287 (385)
93 COG0369 CysJ Sulfite reductase 98.4 8.6E-06 1.9E-10 96.7 17.5 182 594-862 372-559 (587)
94 KOG1158 NADP/FAD dependent oxi 98.4 2.9E-06 6.4E-11 100.7 13.2 128 669-862 489-617 (645)
95 PLN02964 phosphatidylserine de 98.3 2.1E-06 4.6E-11 102.3 11.4 99 154-265 141-245 (644)
96 KOG0038 Ca2+-binding kinase in 98.1 7.4E-06 1.6E-10 78.4 7.5 101 153-266 25-139 (189)
97 PRK05419 putative sulfite oxid 98.1 4.7E-05 1E-09 79.4 14.2 127 386-545 68-194 (205)
98 COG5126 FRQ1 Ca2+-binding prot 98.1 2.3E-05 5.1E-10 77.8 10.1 98 153-264 56-157 (160)
99 KOG0028 Ca2+-binding protein ( 98.0 4.6E-05 9.9E-10 74.5 11.1 101 153-265 30-136 (172)
100 KOG0031 Myosin regulatory ligh 98.0 5.1E-05 1.1E-09 73.7 11.0 96 153-264 29-130 (171)
101 PTZ00183 centrin; Provisional 98.0 5.3E-05 1.1E-09 74.7 10.7 97 156-264 53-155 (158)
102 KOG0027 Calmodulin and related 97.8 0.0001 2.2E-09 73.2 9.4 95 156-262 44-148 (151)
103 PTZ00184 calmodulin; Provision 97.7 0.00015 3.3E-09 70.4 9.4 95 156-262 47-147 (149)
104 PF13499 EF-hand_7: EF-hand do 97.7 5.9E-05 1.3E-09 63.6 4.9 60 189-260 2-65 (66)
105 COG2717 Predicted membrane pro 97.6 0.0014 3E-08 67.8 14.1 122 391-545 73-194 (209)
106 PF13499 EF-hand_7: EF-hand do 97.4 0.00021 4.5E-09 60.3 5.1 57 157-216 1-66 (66)
107 smart00027 EH Eps15 homology d 97.4 0.00035 7.5E-09 63.9 6.8 65 153-220 7-74 (96)
108 cd05026 S-100Z S-100Z: S-100Z 97.4 0.00035 7.5E-09 63.7 6.6 65 153-220 7-83 (93)
109 KOG0034 Ca2+/calmodulin-depend 97.4 0.00094 2E-08 68.6 10.0 97 156-265 69-177 (187)
110 PF13833 EF-hand_8: EF-hand do 97.3 0.00033 7.1E-09 56.8 5.0 48 167-217 1-52 (54)
111 KOG0037 Ca2+-binding protein, 97.3 0.001 2.2E-08 68.6 9.5 91 156-264 57-153 (221)
112 KOG1159 NADP-dependent flavopr 97.3 0.0018 4E-08 73.5 11.4 101 581-696 357-457 (574)
113 cd05029 S-100A6 S-100A6: S-100 97.3 0.00073 1.6E-08 61.0 6.8 64 153-219 7-80 (88)
114 cd05024 S-100A10 S-100A10: A s 97.3 0.00088 1.9E-08 60.5 7.2 64 153-219 5-77 (91)
115 cd00052 EH Eps15 homology doma 97.2 0.00068 1.5E-08 56.9 6.1 58 159-219 2-62 (67)
116 KOG4223 Reticulocalbin, calume 97.2 0.00083 1.8E-08 72.9 8.0 96 155-260 162-266 (325)
117 PF13833 EF-hand_8: EF-hand do 97.2 0.00069 1.5E-08 54.8 5.7 51 204-263 2-53 (54)
118 KOG4666 Predicted phosphate ac 97.2 0.00031 6.7E-09 75.6 4.2 98 154-264 221-325 (412)
119 cd05026 S-100Z S-100Z: S-100Z 97.1 0.0014 3E-08 59.8 7.5 65 189-264 12-82 (93)
120 KOG0037 Ca2+-binding protein, 97.1 0.0018 3.9E-08 66.8 8.6 88 153-259 124-216 (221)
121 cd00051 EFh EF-hand, calcium b 97.1 0.0017 3.8E-08 52.2 6.8 60 190-261 3-62 (63)
122 cd05027 S-100B S-100B: S-100B 97.0 0.0019 4.2E-08 58.2 7.2 67 188-265 9-81 (88)
123 KOG2562 Protein phosphatase 2 97.0 0.0013 2.9E-08 74.1 7.2 98 157-263 279-379 (493)
124 KOG0030 Myosin essential light 97.0 0.0027 5.9E-08 61.0 7.9 101 154-264 9-117 (152)
125 cd05031 S-100A10_like S-100A10 97.0 0.0017 3.7E-08 59.1 6.4 62 154-218 9-79 (94)
126 cd05023 S-100A11 S-100A11: S-1 97.0 0.0018 3.9E-08 58.6 6.5 64 153-219 6-81 (89)
127 cd05022 S-100A13 S-100A13: S-1 96.9 0.0018 3.9E-08 58.6 6.0 64 153-219 5-76 (89)
128 cd05027 S-100B S-100B: S-100B 96.9 0.0026 5.6E-08 57.4 7.0 64 153-219 5-80 (88)
129 KOG0044 Ca2+ sensor (EF-Hand s 96.9 0.0025 5.4E-08 65.6 7.5 116 134-263 44-175 (193)
130 cd05025 S-100A1 S-100A1: S-100 96.9 0.0037 8.1E-08 56.6 7.7 68 187-265 9-82 (92)
131 cd05025 S-100A1 S-100A1: S-100 96.9 0.0025 5.4E-08 57.7 6.5 64 154-220 7-82 (92)
132 cd00252 SPARC_EC SPARC_EC; ext 96.8 0.0025 5.5E-08 60.5 6.5 57 156-216 48-106 (116)
133 PF00036 EF-hand_1: EF hand; 96.8 0.0014 3E-08 46.6 3.1 28 228-264 2-29 (29)
134 cd00051 EFh EF-hand, calcium b 96.7 0.0034 7.4E-08 50.5 5.8 56 158-216 2-62 (63)
135 smart00027 EH Eps15 homology d 96.7 0.0059 1.3E-07 55.8 7.9 65 188-266 11-75 (96)
136 cd05031 S-100A10_like S-100A10 96.7 0.005 1.1E-07 56.1 7.4 67 188-264 9-80 (94)
137 cd05030 calgranulins Calgranul 96.6 0.0043 9.4E-08 55.9 6.1 64 153-219 5-80 (88)
138 cd05022 S-100A13 S-100A13: S-1 96.6 0.0063 1.4E-07 55.1 6.9 66 188-264 9-76 (89)
139 cd00252 SPARC_EC SPARC_EC; ext 96.5 0.0077 1.7E-07 57.2 7.0 61 186-262 47-107 (116)
140 cd05023 S-100A11 S-100A11: S-1 96.4 0.012 2.7E-07 53.2 7.5 65 189-264 11-81 (89)
141 cd00052 EH Eps15 homology doma 96.4 0.011 2.4E-07 49.4 6.8 61 190-264 2-62 (67)
142 KOG0036 Predicted mitochondria 96.3 0.013 2.7E-07 65.7 8.7 93 156-265 14-112 (463)
143 KOG0028 Ca2+-binding protein ( 96.3 0.024 5.2E-07 55.9 9.4 97 154-263 70-170 (172)
144 cd00213 S-100 S-100: S-100 dom 96.3 0.013 2.8E-07 52.4 7.1 66 188-264 9-80 (88)
145 PF13405 EF-hand_6: EF-hand do 96.2 0.0044 9.6E-08 44.4 3.1 27 227-262 1-27 (31)
146 COG2375 ViuB Siderophore-inter 96.1 1.3 2.8E-05 47.9 22.2 122 548-693 16-165 (265)
147 cd00213 S-100 S-100: S-100 dom 96.1 0.021 4.5E-07 51.1 7.3 63 154-219 6-80 (88)
148 cd05029 S-100A6 S-100A6: S-100 96.0 0.027 5.8E-07 50.9 7.6 66 189-264 12-80 (88)
149 KOG2643 Ca2+ binding protein, 96.0 0.0085 1.9E-07 67.3 5.1 83 170-264 161-262 (489)
150 PF12763 EF-hand_4: Cytoskelet 95.9 0.013 2.8E-07 54.6 5.4 64 153-219 7-72 (104)
151 KOG0377 Protein serine/threoni 95.9 0.047 1E-06 61.4 10.5 122 121-265 440-617 (631)
152 PF00036 EF-hand_1: EF hand; 95.9 0.01 2.2E-07 42.2 3.3 27 189-218 2-28 (29)
153 cd05030 calgranulins Calgranul 95.5 0.038 8.2E-07 49.8 6.6 67 189-265 10-81 (88)
154 KOG0751 Mitochondrial aspartat 95.4 0.048 1E-06 62.1 8.2 98 154-264 31-137 (694)
155 PRK12309 transaldolase/EF-hand 95.2 0.04 8.6E-07 63.1 7.1 66 175-265 322-387 (391)
156 KOG2643 Ca2+ binding protein, 95.0 0.068 1.5E-06 60.4 7.9 93 158-265 235-348 (489)
157 PF13202 EF-hand_5: EF hand; P 94.8 0.027 5.8E-07 38.5 2.7 25 228-261 1-25 (25)
158 KOG0036 Predicted mitochondria 93.5 0.24 5.2E-06 55.8 8.2 110 136-265 37-148 (463)
159 PF14658 EF-hand_9: EF-hand do 92.9 0.19 4.2E-06 42.7 4.9 61 191-263 2-64 (66)
160 KOG4347 GTPase-activating prot 92.5 0.1 2.3E-06 61.6 3.8 93 139-236 489-601 (671)
161 KOG0041 Predicted Ca2+-binding 92.5 0.24 5.2E-06 50.7 5.8 95 153-259 96-199 (244)
162 KOG4223 Reticulocalbin, calume 92.3 0.27 5.8E-06 53.9 6.3 97 156-261 77-189 (325)
163 PRK12309 transaldolase/EF-hand 92.2 0.21 4.5E-06 57.3 5.6 51 156-219 334-386 (391)
164 PF14788 EF-hand_10: EF hand; 91.7 0.32 7E-06 39.2 4.6 46 171-219 2-50 (51)
165 PLN02964 phosphatidylserine de 91.2 0.37 8.1E-06 58.4 6.6 59 158-219 181-244 (644)
166 PF14788 EF-hand_10: EF hand; 90.5 0.63 1.4E-05 37.6 5.1 48 207-263 2-49 (51)
167 PF13202 EF-hand_5: EF hand; P 89.7 0.43 9.3E-06 32.6 3.1 23 190-215 2-24 (25)
168 smart00054 EFh EF-hand, calciu 89.5 0.4 8.6E-06 31.8 3.0 27 228-263 2-28 (29)
169 PF13405 EF-hand_6: EF-hand do 88.1 0.64 1.4E-05 33.1 3.3 26 189-217 2-27 (31)
170 PF10591 SPARC_Ca_bdg: Secrete 87.8 0.35 7.5E-06 45.8 2.3 53 157-212 55-110 (113)
171 PF08021 FAD_binding_9: Sidero 87.3 2.7 5.9E-05 40.0 8.0 92 553-664 1-117 (117)
172 PF14658 EF-hand_9: EF-hand do 87.0 0.94 2E-05 38.6 4.1 57 160-218 2-64 (66)
173 KOG0377 Protein serine/threoni 86.1 1.2 2.6E-05 50.5 5.5 60 157-219 548-616 (631)
174 KOG0040 Ca2+-binding actin-bun 85.8 2.4 5.2E-05 54.5 8.4 95 152-259 2249-2357(2399)
175 KOG0038 Ca2+-binding kinase in 85.1 2.3 5E-05 41.6 6.2 100 157-266 75-180 (189)
176 cd05024 S-100A10 S-100A10: A s 84.0 4.7 0.0001 36.7 7.4 63 189-264 10-77 (91)
177 KOG0751 Mitochondrial aspartat 83.9 2.2 4.8E-05 49.1 6.5 87 158-263 110-207 (694)
178 PF12763 EF-hand_4: Cytoskelet 83.1 3.2 6.9E-05 38.8 6.2 89 187-295 10-99 (104)
179 PF10591 SPARC_Ca_bdg: Secrete 81.8 1.6 3.4E-05 41.4 3.7 48 185-237 52-99 (113)
180 KOG0031 Myosin regulatory ligh 75.6 11 0.00023 37.6 7.3 86 167-264 77-166 (171)
181 PF09279 EF-hand_like: Phospho 73.6 8.2 0.00018 33.9 5.7 61 157-217 1-68 (83)
182 smart00054 EFh EF-hand, calciu 70.9 5.7 0.00012 25.8 3.2 26 189-217 2-27 (29)
183 KOG2562 Protein phosphatase 2 69.2 8.4 0.00018 44.5 5.8 91 157-259 312-420 (493)
184 KOG0041 Predicted Ca2+-binding 68.8 13 0.00029 38.4 6.5 65 188-264 100-164 (244)
185 PLN02631 ferric-chelate reduct 68.0 14 0.0003 45.8 7.7 56 814-875 641-697 (699)
186 KOG4065 Uncharacterized conser 66.1 18 0.00038 34.3 6.1 51 165-215 78-142 (144)
187 KOG0039 Ferric reductase, NADH 64.8 6.7 0.00015 48.2 4.3 48 363-416 207-255 (646)
188 KOG4251 Calcium binding protei 60.5 6.6 0.00014 41.5 2.6 63 156-221 101-171 (362)
189 KOG0030 Myosin essential light 58.2 18 0.00039 35.5 4.9 57 154-215 89-148 (152)
190 cd07313 terB_like_2 tellurium 57.8 46 0.001 30.3 7.6 82 167-261 12-98 (104)
191 KOG0035 Ca2+-binding actin-bun 57.6 33 0.00071 43.2 8.2 94 156-259 747-848 (890)
192 cd07316 terB_like_DjlA N-termi 55.5 64 0.0014 29.3 8.2 84 167-261 12-99 (106)
193 KOG0169 Phosphoinositide-speci 52.1 57 0.0012 40.2 8.9 118 131-264 110-233 (746)
194 PLN02292 ferric-chelate reduct 50.4 21 0.00046 44.2 5.2 58 447-513 166-226 (702)
195 KOG4251 Calcium binding protei 49.4 30 0.00064 36.8 5.2 86 167-264 69-169 (362)
196 PF00033 Cytochrom_B_N: Cytoch 48.9 89 0.0019 31.2 8.8 26 390-415 45-70 (188)
197 PLN02844 oxidoreductase/ferric 48.6 43 0.00094 41.8 7.4 55 450-513 155-212 (722)
198 PRK10639 formate dehydrogenase 48.5 94 0.002 32.6 9.1 23 490-512 146-169 (211)
199 KOG2557 Uncharacterized conser 48.0 25 0.00054 39.6 4.7 98 156-264 20-123 (427)
200 KOG0046 Ca2+-binding actin-bun 47.9 49 0.0011 39.1 7.1 61 153-216 16-83 (627)
201 PF01292 Ni_hydr_CYTB: Prokary 45.1 1.3E+02 0.0028 30.1 9.3 22 392-413 43-64 (182)
202 PF13301 DUF4079: Protein of u 41.1 4.2E+02 0.009 27.2 13.5 86 392-512 80-166 (175)
203 KOG3555 Ca2+-binding proteogly 39.4 27 0.00059 39.0 3.3 90 157-263 212-310 (434)
204 KOG2568 Predicted membrane pro 37.1 7.5E+02 0.016 29.8 14.6 58 486-544 377-442 (518)
205 PF05517 p25-alpha: p25-alpha 35.4 58 0.0013 32.5 4.8 60 158-220 1-71 (154)
206 PF01794 Ferric_reduct: Ferric 35.4 89 0.0019 29.0 5.9 53 455-514 2-55 (125)
207 PF09279 EF-hand_like: Phospho 35.3 73 0.0016 27.8 4.9 63 189-264 2-70 (83)
208 PF09069 EF-hand_3: EF-hand; 31.3 57 0.0012 29.7 3.5 30 225-264 2-31 (90)
209 KOG4578 Uncharacterized conser 28.9 31 0.00067 38.3 1.6 63 190-264 336-399 (421)
210 PF11658 DUF3260: Protein of u 27.2 95 0.0021 36.8 5.3 31 444-474 85-115 (518)
211 COG4485 Predicted membrane pro 27.1 1.5E+02 0.0032 36.6 6.9 54 490-547 128-181 (858)
212 KOG0046 Ca2+-binding actin-bun 25.2 2.4E+02 0.0051 33.7 7.8 62 190-264 22-86 (627)
213 TIGR03368 cellulose_yhjU cellu 24.8 1.2E+02 0.0025 36.0 5.4 18 318-335 4-21 (518)
214 PF14358 DUF4405: Domain of un 24.1 87 0.0019 26.2 3.2 24 390-413 40-63 (64)
215 COG5522 Predicted integral mem 23.8 1.5E+02 0.0033 31.1 5.4 25 490-514 126-150 (236)
216 COG2976 Uncharacterized protei 22.6 93 0.002 32.5 3.6 36 300-337 11-46 (207)
217 PF09726 Macoilin: Transmembra 21.9 5.1E+02 0.011 32.4 10.5 24 309-332 26-49 (697)
218 KOG4666 Predicted phosphate ac 21.8 3.5E+02 0.0075 30.5 7.9 98 156-266 259-362 (412)
219 KOG0040 Ca2+-binding actin-bun 21.7 1.4E+02 0.0031 39.7 5.6 62 190-263 2256-2324(2399)
220 PF14145 YrhK: YrhK-like prote 21.4 1.8E+02 0.0039 24.4 4.5 50 490-543 4-53 (59)
221 cd03497 SQR_TypeB_1_TM Succina 21.2 3.7E+02 0.008 28.2 8.0 103 393-513 8-113 (207)
222 PF00033 Cytochrom_B_N: Cytoch 20.2 6.8E+02 0.015 24.7 9.6 26 389-414 147-172 (188)
223 KOG4004 Matricellular protein 20.1 31 0.00068 35.6 -0.3 53 195-260 195-247 (259)
224 cd07176 terB tellurite resista 20.0 4.7E+02 0.01 23.6 7.6 80 167-260 15-102 (111)
No 1
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.8e-100 Score=903.60 Aligned_cols=605 Identities=49% Similarity=0.854 Sum_probs=524.8
Q ss_pred CCcccHHHHHHHHHhhcCCChhhhHHHHHhhhcc---------ccceEeeccCCC-------------------------
Q 002830 204 IGKITKEELREFWLQISDQSFDARLQIFFDIVDE---------LGEFTSYYFPCK------------------------- 249 (875)
Q Consensus 204 ~g~I~f~Ef~~~~~~~~~~s~d~kL~~~F~myD~---------v~eii~l~a~~n------------------------- 249 (875)
++ |+++||. +.+++.|+|+|.+|+|||+ +.|+++++...+
T Consensus 2 ~~-~~~~~~~-----~~~~~~d~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (646)
T KOG0039|consen 2 EG-ISFQELK-----ITDCSYDDKLQTFFDMYDKGDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHK 75 (646)
T ss_pred CC-cchhhhc-----ccCCChhHHHHHHHHHHhhhcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhcccccc
Confidence 56 9999998 8899999999999999995 333333222222
Q ss_pred CccCHHHHHHHHHhccccC----CCCCCcccccccccccccCCCCCCCCcchhhhhhhhhhhhcchhHHHHHHHHHHHHH
Q 002830 250 RVSHLWQLETLLLQRDTYM----NYSRPLSTTSKTSNWSQNLSPFTPKGAFRKLSFTFRCLVLENWQRGWILLLWMMAMA 325 (875)
Q Consensus 250 G~I~~~el~~ll~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~l~~~in~ 325 (875)
||++.++++.++.+.+... .....+ + .++.+.+++.. +++..+.+.+...|++++|++++.+++|+++++
T Consensus 76 ~y~~~~~~~~ll~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 149 (646)
T KOG0039|consen 76 GYITNEDLEILLLQIPTLLFAILLSFANL---S--LLLSQPLKPTR-RKPLLRNLVRMGAFLPNLWLRVWVLFLWLGLNV 149 (646)
T ss_pred ceeeecchhHHHHhchHHHHHHHHHHHHH---H--hhhcccccccc-ccccchheeeeeeeeccceEeeeeehHHHHHHH
Confidence 6777777777776655431 000011 2 45555565544 566778888899999999999999999999999
Q ss_pred HHHHHHHhhhcchhhhHhhcchhhhhhhhHHHHhhHHHHHHHHhhhhhhhhhc-cccccccccccchhhHHHHHHHHHHH
Q 002830 326 GLFAWKFIQYKNMAAFQVMGYCLTTAKGAAETLKLNMALILLPVCRNTLTWLR-STRARYFVPFDDNINFHKTIACAIII 404 (875)
Q Consensus 326 ~lf~~~~~~y~~~~~~~~~g~~~~~ar~~a~~l~~n~~lill~v~Rn~lt~Lr-~~~l~~~vp~d~~~~fHk~ia~~i~v 404 (875)
+||.|++.+|.....+++||.|++.++++|+++++||+++++++|||.++||+ .+.+..++|+|+++.||+.+|..+..
T Consensus 150 ~lf~~~~~~y~~~~~~~~~g~~~~~~~~~~~~l~~~~~~ill~~~R~~~~~L~~~~fl~~~~p~~~n~~fh~l~g~~~~~ 229 (646)
T KOG0039|consen 150 GLFTWRFLQYVYLGTRHILGLCLALARGSAETLNFNMALILLPVCRNRLTFLRCSTFLFSYLPFDRNLNFHKLVALTIAV 229 (646)
T ss_pred HHHHHHHHHHHhhhhhhhhhheeeeeccccccchhhHHHHHHHHHHHHHHHHHHhhhhheEeeccccchHHHHHHHHHHH
Confidence 99999999999888889999999999999999999999999999999999999 67777889999999999999999999
Q ss_pred HHHHHHHhhhcccccccccCCCCCc-cccccccccCCccchhhcccchhHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCC
Q 002830 405 GVVLHVGNHLACDFPRLVNSSPEEF-APMSTQFHNKKPTYKYLLTGVEGVTGIVMVVLMAIAFTLATHKFRKNGVRLPSP 483 (875)
Q Consensus 405 ~~~iH~i~h~~~~f~~l~~~~~~~~-~~l~~~f~~~~p~~~~~~~~~~g~tGiv~lvll~il~~~S~~~~Rr~~~~~~~~ 483 (875)
+..+|.++|.+|.++.++++....+ ......++ ++.|++++.++.++||++++++|.+|+++|+|+|||+.
T Consensus 230 ~~~~H~w~~~~~~~~~~ih~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~tGv~~~i~~~im~v~s~~~fRR~~------ 301 (646)
T KOG0039|consen 230 FILLHIWLHLVNFFPFLVHGLEYTISLASELFFL--PKTYKWLLLGVVGLTGVILLILMLIMFVLSLPFFRRRF------ 301 (646)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhccc--chhhhhhhcCCCcchhHHHHHHHHHHHHHhhHHHHHHH------
Confidence 9999999999999988887654332 12222332 56788899999999999999999999999999999998
Q ss_pred CccccchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchhhhhhHhHHHHHhhccceeeEeeeeeeEEEEEEeeCCC
Q 002830 484 FNRLTGFNAFWYSHHLTAIVYILLIVHGNFLYLAHEWYQKTTWMYISAPLLLYVAERNLRTRRSGHFSAKDLKVSVLPGN 563 (875)
Q Consensus 484 ~~~~~~Ye~F~~~H~L~~i~~ill~~H~~~~~~~~~w~~~~~w~y~~~~~~ly~~drl~R~~r~~~~~~~i~~v~~l~~~ 563 (875)
||+|||+||+++++|+++++||...++. .+|+|+++|+.+|++||++|..|+ ..+++++++..+|++
T Consensus 302 ------~e~F~ytH~l~~v~~illi~hg~~~~~~------~~w~~~~~p~~ly~~dR~~r~~r~-~~~~~i~~~~llp~~ 368 (646)
T KOG0039|consen 302 ------YEAFWYTHHLYIVFYILLIIHGGFRLLG------TTWMYIAVPVLLYILDRILRFLRS-QKNVKIAKVVLLPSD 368 (646)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHhcccccc------cchhHHHHHHHHHHHHHHHHHHHH-hcCceEEEEEEcCCC
Confidence 9999999999999999999999865543 589999999999999999999888 578999999999999
Q ss_pred EEEEEEecCCCcccCCCcEEEEECCCCCCcccccceeecCCCCCeEEEEEEecCCCcHHHHHHhhhcccccccCCccccc
Q 002830 564 VLSIVMSKPNGFRYRSGQYIFLQCPTISSFEWHPFSITSAPGDDHLSVHIRIVGDWTHELKQVFTEDKDSTYAIGRAEFG 643 (875)
Q Consensus 564 vl~L~~~~p~~~~ykpGQyvfL~~p~is~~e~HPFTItSaP~dd~lsl~IR~~G~wT~~L~~~~~~~~~~~~~~G~s~~l 643 (875)
|++|+++||++++|+|||||||+||+++++|||||||+|+|+||++++|||+.||||++|++.+.+.|++++..+.
T Consensus 369 vi~L~~~Kp~~f~y~~Gqyifv~~p~ls~~qwHPFTItSsp~dd~lsvhIk~~g~wT~~L~~~~~~~~~~~~~~~~---- 444 (646)
T KOG0039|consen 369 VLELIMSKPPGFKYKPGQYIFVNCPSLSKLEWHPFTITSAPEDDFLSVHIKALGDWTEKLRNAFSEVSQPPESDKS---- 444 (646)
T ss_pred eEEEEEeCCCCCCCCCCCEEEEECccccccccCCceeecCCCCCEEEEEEEecCcHHHHHHHHHhhhccccccccc----
Confidence 9999999999999999999999999999999999999999999999999999999999999999865543111110
Q ss_pred cCCCCCCCCCEEEEECcCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhccccCCCcccccccCcCCCCCCC
Q 002830 644 QGGTNRRIQPRLLVDGPYGAAAQDYSNYDVLLLVGLGIGATPFISILRDLLNNTREELMDSNTDSSRSASLNSCTSSNTS 723 (875)
Q Consensus 644 ~~~~~~~~~~~v~IdGPYG~~~~~~~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (875)
...+++.||||||++++|+.+||+++||||||||||++||+++++++.+..+...+ .
T Consensus 445 ------~~~~~i~IdGPYG~~s~d~~~~e~~vLV~~GiGvtPf~sil~~l~~~~~~~~~~~~-----------------~ 501 (646)
T KOG0039|consen 445 ------YPFPKILIDGPYGAPSQDVFKYEVLVLVGGGIGVTPFASILKDLLNKISLGRTKAP-----------------T 501 (646)
T ss_pred ------ccCceEEEECCCCCCchhhhhcceEEEEccCcccCccHHHHHHHHhhccCCCCcCc-----------------c
Confidence 12699999999999999999999999999999999999999999999765321100 0
Q ss_pred CCCccccCCCCCCCCCceEEEEEEeCCCCchhhHHHHHHHHHhhcCCCcEEEEEEecccccCCChhhHHHHHHHhhhccc
Q 002830 724 PGSSMIAGGKKKPQRTRNAYFYWVTREPGSFEWFKGVMDQVAEMDLKGQIELHNYLTSVYEEGDARSTLITMVQALNHAK 803 (875)
Q Consensus 724 ~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~eWf~~~L~el~e~~~~~~iev~~ylT~~~~~~d~rs~l~~m~q~l~~~k 803 (875)
+ .......+++++|+|++|++.+++||.++|.++.+.+..+.+++|+|+|+.+++.|++++++.|.|.+.|++
T Consensus 502 ~-------~~~~~~~~~~~~F~Wv~~~~~sf~wf~~~l~~v~~~~~~~~~e~~~~~t~~~~~~d~~~~~~~~~~~~~~~~ 574 (646)
T KOG0039|consen 502 S-------DYSDSLKLKKVYFYWVTREQRSFEWFKGLLTEVEEYDSSGVIELHNYVTSSYEEGDARSALIQMVQKLLHAK 574 (646)
T ss_pred c-------cccccceecceeEEEEeccccchHHHHHHHHHHHHHHhcCCchhheehhHhHhhhhhhhHHHHHHHhhcccc
Confidence 0 111234689999999999999999999999999999888889999999999999999999999999999999
Q ss_pred CCcccccCCeeeeecCCCCHHHHHHHHHhhCCCCeEEEEEeCchHHHHHHHHHHHhhccCCCCeEEEEEecC
Q 002830 804 HGVDILSGTRVRTHFARPNWKEVFSRVATKHPNATIGVFYCGMPVLAKELKKLSHELTHRTSTRFEFHKEYF 875 (875)
Q Consensus 804 ~g~divsg~rv~~~~gRPd~~~v~~~~~~~~~~~~v~Vf~CGPp~l~~~lr~~~~~~~~~~~~~f~fhkE~F 875 (875)
++.|+++|+++++|+|||||++++++++..|++.++|||+||||+|++++++.|.++++++.+.|+||+|+|
T Consensus 575 ~~~di~~g~~~~~~~gRPn~~~~~~~~~~~~~~~~vgVf~CGp~~l~~~~~~~~~~~~~~~~~~~~f~~E~F 646 (646)
T KOG0039|consen 575 NGVDIVTGLKVETHFGRPNWKEVFKEIAKSHPNVRVGVFSCGPPGLVKELRKLCNDFSSSTATRFEFHKENF 646 (646)
T ss_pred cCccccccceeeeeCCCCCHHHHHHHHHhhCCCceEEEEEeCCHHHHHHHHHHHHhcccccCceeeeeeccC
Confidence 999999999999999999999999999999988889999999999999999999999988899999999998
No 2
>PLN02631 ferric-chelate reductase
Probab=100.00 E-value=4.2e-57 Score=533.56 Aligned_cols=336 Identities=25% Similarity=0.448 Sum_probs=268.6
Q ss_pred hhhhhhhHHHHhhHHHHHHHHhhhh-hhhhhccccccccccccchhhHHHHHHHHHHHHHHHHHHhhhcccccccccCCC
Q 002830 348 LTTAKGAAETLKLNMALILLPVCRN-TLTWLRSTRARYFVPFDDNINFHKTIACAIIIGVVLHVGNHLACDFPRLVNSSP 426 (875)
Q Consensus 348 ~~~ar~~a~~l~~n~~lill~v~Rn-~lt~Lr~~~l~~~vp~d~~~~fHk~ia~~i~v~~~iH~i~h~~~~f~~l~~~~~ 426 (875)
..++.++|.+..+|||++++|+.|| .++|++| ++||+++.||||+|+++++++++|+++++. ++ ...
T Consensus 150 ~~ig~RtGila~~~lpll~L~a~Rnn~L~~ltG------~s~e~~i~yHRWlGri~~~la~iH~i~y~i-~~---~~~-- 217 (699)
T PLN02631 150 RAFGLRIGYVGHICWAFLFFPVTRASTILPLVG------LTSESSIKYHIWLGHVSNFLFLVHTVVFLI-YW---AMI-- 217 (699)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---Hhh--
Confidence 4578899999999999999999997 8999998 589999999999999999999999999983 21 110
Q ss_pred CCccccccccccCCccchhhcccchhHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCccccchHHHHHHHHHHHHHHHH
Q 002830 427 EEFAPMSTQFHNKKPTYKYLLTGVEGVTGIVMVVLMAIAFTLATHKFRKNGVRLPSPFNRLTGFNAFWYSHHLTAIVYIL 506 (875)
Q Consensus 427 ~~~~~l~~~f~~~~p~~~~~~~~~~g~tGiv~lvll~il~~~S~~~~Rr~~~~~~~~~~~~~~Ye~F~~~H~L~~i~~il 506 (875)
+.+. ..+. ..+.| ..+++|+++++++++|+++|+++|||+. ||+|+++|+++++++++
T Consensus 218 ~~~~---~~~~-w~~~~------~~~~~GviA~v~~~lm~~~Sl~~~RRr~------------YE~F~~~Hillaifiv~ 275 (699)
T PLN02631 218 NKLM---ETFA-WNPTY------VPNLAGTIAMVIGIAMWVTSLPSFRRKK------------FELFFYTHHLYGLYIVF 275 (699)
T ss_pred chhh---hhhh-ccccc------chHHHHHHHHHHHHHHHHhccHHHHhhh------------hhHHHHHHHHHHHHHHh
Confidence 1110 0010 01112 2357899999999999999999999997 99999999999876555
Q ss_pred HHHHhhhhhhhccccccchhhh-hhHhHHHHHhhccceeeEeeeeeeEEEEEEeeCCCEEEEEEecCCCcccCCCcEEEE
Q 002830 507 LIVHGNFLYLAHEWYQKTTWMY-ISAPLLLYVAERNLRTRRSGHFSAKDLKVSVLPGNVLSIVMSKPNGFRYRSGQYIFL 585 (875)
Q Consensus 507 l~~H~~~~~~~~~w~~~~~w~y-~~~~~~ly~~drl~R~~r~~~~~~~i~~v~~l~~~vl~L~~~~p~~~~ykpGQyvfL 585 (875)
+++|.. ..|.| +++++++|++||++|.+|+. ...++++++.+|++++++++++|++++|+||||++|
T Consensus 276 ~~~H~g-----------~~w~~~~~~~ialw~~DR~lR~~r~~-~~~~lv~~~~l~~d~l~l~~~~~~~~~~~PGQfvfL 343 (699)
T PLN02631 276 YVIHVG-----------DSWFCMILPNIFLFFIDRYLRFLQST-KRSRLVSARILPSDNLELTFSKTPGLHYTPTSILFL 343 (699)
T ss_pred eEEecC-----------CchHHHHHHHHHHHHHHHHHHHHHHh-ceEEEEEEEEeCCCeEEEEEEcCCCCcCCCCceEEE
Confidence 567742 13433 34457899999999999876 347788888999999999999988899999999999
Q ss_pred ECCCCCCcccccceeecCCC--CCeEEEEEEecCCCcHHHHHHhhhcccccccCCccccccCCCCCCCCCEEEEECcCCC
Q 002830 586 QCPTISSFEWHPFSITSAPG--DDHLSVHIRIVGDWTHELKQVFTEDKDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGA 663 (875)
Q Consensus 586 ~~p~is~~e~HPFTItSaP~--dd~lsl~IR~~G~wT~~L~~~~~~~~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~ 663 (875)
++|..+.+|||||||+|+|+ ++.++++||..|+||++|++.++. .| ...++.||||||.
T Consensus 344 ~~p~~s~~q~HPFSIaSsp~~~~~~L~~~IK~~Gg~T~~L~~~l~~-------~g------------~~i~V~VeGPYG~ 404 (699)
T PLN02631 344 HVPSISKLQWHPFTITSSSNLEKDTLSVVIRRQGSWTQKLYTHLSS-------SI------------DSLEVSTEGPYGP 404 (699)
T ss_pred EeccCCccceEEEEEeccCCCCCCEEEEEEEcCChHHHHHHHhhhc-------CC------------CeeEEEEECCCCC
Confidence 99999999999999999984 578999999999999999987532 11 1368999999998
Q ss_pred CCCCCCCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhccccCCCcccccccCcCCCCCCCCCCccccCCCCCCCCCceEE
Q 002830 664 AAQDYSNYDVLLLVGLGIGATPFISILRDLLNNTREELMDSNTDSSRSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAY 743 (875)
Q Consensus 664 ~~~~~~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~ 743 (875)
+..+..+++++||||||+||||++|++++++.+..+ ...+.++++
T Consensus 405 ~~~~~~~~~~vVlIAGGsGITP~lSiL~~ll~~~~~-----------------------------------~~~~~~~V~ 449 (699)
T PLN02631 405 NSFDVSRHNSLILVSGGSGITPFISVIRELIFQSQN-----------------------------------PSTKLPDVL 449 (699)
T ss_pred CCCCcCCCCcEEEEEeCcChHhHHHHHHHHHhcccc-----------------------------------cccCCCcEE
Confidence 766677899999999999999999999999866321 011245899
Q ss_pred EEEEeCCCCchhhHHHHHHHHHh---hcCCCcEEEEEEeccccc
Q 002830 744 FYWVTREPGSFEWFKGVMDQVAE---MDLKGQIELHNYLTSVYE 784 (875)
Q Consensus 744 f~Wv~R~~~s~eWf~~~L~el~e---~~~~~~iev~~ylT~~~~ 784 (875)
|+|++|+.+++. |.+++..++. .-.+.++++++|+|+..+
T Consensus 450 Li~~vR~~~dL~-f~deL~~l~~~~~~l~~~ni~i~iyVTR~~~ 492 (699)
T PLN02631 450 LVCSFKHYHDLA-FLDLIFPLDISVSDISRLNLRIEAYITREDK 492 (699)
T ss_pred EEEEECCHHHhh-hHHHHhhhccchhhhhcCceEEEEEEcCCCC
Confidence 999999999996 7777765321 012347999999998543
No 3
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=100.00 E-value=5.2e-56 Score=526.76 Aligned_cols=438 Identities=25% Similarity=0.460 Sum_probs=329.5
Q ss_pred hhhhhhhhHHHHhhHHHHHHHHhhhh-hhhhhccccccccccccchhhHHHHHHHHHHHHHHHHHHhhhcccccccccCC
Q 002830 347 CLTTAKGAAETLKLNMALILLPVCRN-TLTWLRSTRARYFVPFDDNINFHKTIACAIIIGVVLHVGNHLACDFPRLVNSS 425 (875)
Q Consensus 347 ~~~~ar~~a~~l~~n~~lill~v~Rn-~lt~Lr~~~l~~~vp~d~~~~fHk~ia~~i~v~~~iH~i~h~~~~f~~l~~~~ 425 (875)
...+|++.|.+..+|++++++|++|| .+.|+.+ +|||+++.||||+|+++++++++|+++|+. . |...
T Consensus 152 ~~~va~R~G~la~~~Lpll~llv~Rnn~l~~ltG------is~e~~i~fHrWlGr~~~llallH~i~~~i-~---w~~~- 220 (722)
T PLN02844 152 YLRVATRFGLLAEACLALLLLPVLRGLALFRLLG------IQFEASVRYHVWLGTSMIFFATVHGASTLF-I---WGIS- 220 (722)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHhhC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---HHhh-
Confidence 35689999999999999999999997 7788887 699999999999999999999999999873 1 1111
Q ss_pred CCCccccccccccCCccchhhcccchhHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCccccchHHHHHHHHHHHHHHH
Q 002830 426 PEEFAPMSTQFHNKKPTYKYLLTGVEGVTGIVMVVLMAIAFTLATHKFRKNGVRLPSPFNRLTGFNAFWYSHHLTAIVYI 505 (875)
Q Consensus 426 ~~~~~~l~~~f~~~~p~~~~~~~~~~g~tGiv~lvll~il~~~S~~~~Rr~~~~~~~~~~~~~~Ye~F~~~H~L~~i~~i 505 (875)
... . ...+.+...+...++|+++++++++|+++|++++||+. ||+||++|++++++++
T Consensus 221 -~~~---~------~~~~~w~~~~~~~~~G~IAlv~l~iL~itSl~~iRR~~------------YElF~~~H~L~ivflv 278 (722)
T PLN02844 221 -HHI---Q------DEIWKWQKTGRIYLAGEIALVTGLVIWITSLPQIRRKR------------FEIFYYTHHLYIVFLI 278 (722)
T ss_pred -cch---h------hhhhhhccCcchhhhHHHHHHHHHHHHHHhhHHHHhhh------------hHHHHHHHHHHHHHHH
Confidence 000 0 00000111222347899999999999999999999997 9999999999988777
Q ss_pred HHHHHhhhhhhhccccccchhhhhhHhHHHHHhhccceeeEeeeeeeEEEEEEeeCCCEEEEEEecCCCcccCCCcEEEE
Q 002830 506 LLIVHGNFLYLAHEWYQKTTWMYISAPLLLYVAERNLRTRRSGHFSAKDLKVSVLPGNVLSIVMSKPNGFRYRSGQYIFL 585 (875)
Q Consensus 506 ll~~H~~~~~~~~~w~~~~~w~y~~~~~~ly~~drl~R~~r~~~~~~~i~~v~~l~~~vl~L~~~~p~~~~ykpGQyvfL 585 (875)
++++|+.. ..|.|+++++++|++||++|.+++.. ...++++..+|++++++++++|..++|+||||++|
T Consensus 279 ~~~~H~~~----------~~~~~v~~~i~L~~~DRllR~~~s~~-~~~vvs~~~~~~~~v~l~i~r~~~~~f~PGQfV~L 347 (722)
T PLN02844 279 FFLFHAGD----------RHFYMVFPGIFLFGLDKLLRIVQSRP-ETCILSARLFPCKAIELVLPKDPGLKYAPTSVIFM 347 (722)
T ss_pred hhhHhhcC----------cchhhhHHHHHHHHHHHHhheEEEee-eEEEEEEEEecCCEEEEEEECCCCCCcCCCeeEEE
Confidence 77889731 12335566789999999999988753 34466778899999999999998999999999999
Q ss_pred ECCCCCCcccccceeecCC--CCCeEEEEEEecCCCcHHHHHHhhhcccccccCCccccccCCCCCCCCCEEEEECcCCC
Q 002830 586 QCPTISSFEWHPFSITSAP--GDDHLSVHIRIVGDWTHELKQVFTEDKDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGA 663 (875)
Q Consensus 586 ~~p~is~~e~HPFTItSaP--~dd~lsl~IR~~G~wT~~L~~~~~~~~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~ 663 (875)
++|..+++|||||||+|+| +++.++++||..|+||++|.+.+....+ +|.. .....++.|+||||.
T Consensus 348 ~vp~~s~~q~HPFSIaS~p~~~~~~l~~~IK~~gG~T~~L~~~i~~~l~----~g~~--------~~~~~~v~VeGPYG~ 415 (722)
T PLN02844 348 KIPSISRFQWHPFSITSSSNIDDHTMSVIIKCEGGWTNSLYNKIQAELD----SETN--------QMNCIPVAIEGPYGP 415 (722)
T ss_pred EECCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCchHHHHHHHHhhcc----CCCC--------cccceEEEEECCccC
Confidence 9999999999999999987 4678999999999999999987643211 1100 001258999999999
Q ss_pred CCCCCCCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhccccCCCcccccccCcCCCCCCCCCCccccCCCCCCCCCceEE
Q 002830 664 AAQDYSNYDVLLLVGLGIGATPFISILRDLLNNTREELMDSNTDSSRSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAY 743 (875)
Q Consensus 664 ~~~~~~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~ 743 (875)
+..+...+++++||||||||||++|+++++.++... .....++++
T Consensus 416 ~s~~~~~~~~lVLIAGGiGITPfLSiLrdl~~~~~~-----------------------------------~~~~~~~V~ 460 (722)
T PLN02844 416 ASVDFLRYDSLLLVAGGIGITPFLSILKEIASQSSS-----------------------------------RYRFPKRVQ 460 (722)
T ss_pred CCCCccCCCeEEEEEcCcCHHHHHHHHHHHHhcccc-----------------------------------ccCCCCcEE
Confidence 876777889999999999999999999999864211 011257899
Q ss_pred EEEEeCCCCchhhHHHHHHHHHhh-cCCCcEEEEEEecccccCCC---------------------hhh-----------
Q 002830 744 FYWVTREPGSFEWFKGVMDQVAEM-DLKGQIELHNYLTSVYEEGD---------------------ARS----------- 790 (875)
Q Consensus 744 f~Wv~R~~~s~eWf~~~L~el~e~-~~~~~iev~~ylT~~~~~~d---------------------~rs----------- 790 (875)
|+|++|+.+++.|+.++..++.+. .....+++++|+|+...++. .+.
T Consensus 461 LIw~vR~~~dL~~~del~~~l~~~~~~~~~lkl~iyVTRE~~~~~rl~~~i~~~~~~~~~~~~~~~~~~~i~G~~~~lw~ 540 (722)
T PLN02844 461 LIYVVKKSQDICLLNPISSLLLNQSSNQLNLKLKVFVTQEEKPNATLRELLNQFSQVQTVNFSTKCSRYAIHGLESFLWM 540 (722)
T ss_pred EEEEECCHHHhhhHHHHHHHhHHhHHHhcCceEEEEECCCCCCCCchhhHhhccchhhhcCCCCCCCceEEeCCCchHHH
Confidence 999999999998887766555421 12246899999998543311 000
Q ss_pred -HH-----------HHHHHh----hhc----------------ccCC---------------------------------
Q 002830 791 -TL-----------ITMVQA----LNH----------------AKHG--------------------------------- 805 (875)
Q Consensus 791 -~l-----------~~m~q~----l~~----------------~k~g--------------------------------- 805 (875)
+. +...+. .+| +++.
T Consensus 541 ~~~~~~s~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 620 (722)
T PLN02844 541 AAMVALTSITFLVFLIGLNHIFIPSEHKSHSGVKMAASGEMKTAKEKTPSWVVDLLLIVSFIIAITCSTFVAIILRWRRL 620 (722)
T ss_pred HHHHHHHHHHHHHHHHHHheEEeccccccccchhcccccccccccCCCchHHHHHHHHHHHHHHheecceEeEeeecccc
Confidence 00 000000 000 0000
Q ss_pred ---ccccc--------------C----CeeeeecC-CCCHHHHHHHHHhhCCCCeEEEEEeCchHHHHHHHHHHHhhcc-
Q 002830 806 ---VDILS--------------G----TRVRTHFA-RPNWKEVFSRVATKHPNATIGVFYCGMPVLAKELKKLSHELTH- 862 (875)
Q Consensus 806 ---~divs--------------g----~rv~~~~g-RPd~~~v~~~~~~~~~~~~v~Vf~CGPp~l~~~lr~~~~~~~~- 862 (875)
.+..+ + ....+|+| |||+++++..+.++..+++|||.+|||++|..+|.+.|+..+.
T Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~rp~~~~i~~~~~~~~~~~~vgvlv~gp~~~~~~va~~~~~~~~~ 700 (722)
T PLN02844 621 KKEIPRVSQKQGIKPEEGSMEKRGPVLEEHEIHFGGRPNFQDIFSKFPKETRGSDIGVLVCGPETMKESVASMCRLKSQC 700 (722)
T ss_pred ccCCccccccccCCCCCccccccccccccceeecCCCCCHHHHHHHhhhhccCCceeEEEeCchHHHHHHHHHHHhcccc
Confidence 00000 0 12356786 9999999999999998899999999999999999999998776
Q ss_pred ----C---CCCeEEEEEecC
Q 002830 863 ----R---TSTRFEFHKEYF 875 (875)
Q Consensus 863 ----~---~~~~f~fhkE~F 875 (875)
. ..+.|.||.=+|
T Consensus 701 ~~~~~~~~~~~~~~~hs~~f 720 (722)
T PLN02844 701 FNVGDDGKRKMYFSFHSLNF 720 (722)
T ss_pred cccccccccCCceeeeeccc
Confidence 1 257899998887
No 4
>PLN02292 ferric-chelate reductase
Probab=100.00 E-value=1.9e-56 Score=529.18 Aligned_cols=424 Identities=22% Similarity=0.389 Sum_probs=319.8
Q ss_pred hhhhhhhHHHHhhHHHHHHHHhhhh-hhhhhccccccccccccchhhHHHHHHHHHHHHHHHHHHhhhcccccccccCCC
Q 002830 348 LTTAKGAAETLKLNMALILLPVCRN-TLTWLRSTRARYFVPFDDNINFHKTIACAIIIGVVLHVGNHLACDFPRLVNSSP 426 (875)
Q Consensus 348 ~~~ar~~a~~l~~n~~lill~v~Rn-~lt~Lr~~~l~~~vp~d~~~~fHk~ia~~i~v~~~iH~i~h~~~~f~~l~~~~~ 426 (875)
-.+|.++|.+..++||++++|++|| .+.|++| +|||+++.||||+|+++++++++|++++++ .+ .. .
T Consensus 167 ~~vg~R~Gila~~~lpll~l~~~Rnn~L~~ltG------~s~e~f~~yHRWlGrii~ll~~lH~i~y~i-~~---~~--~ 234 (702)
T PLN02292 167 DSIAVRLGLVGNICLAFLFYPVARGSSLLAAVG------LTSESSIKYHIWLGHLVMTLFTSHGLCYII-YW---IS--M 234 (702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---Hh--c
Confidence 3478899999999999999999997 8999998 589999999999999999999999999984 11 11 1
Q ss_pred CCccccccccccCCccchhhcccchhHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCccccchHHHHHHHHHHHHHHHH
Q 002830 427 EEFAPMSTQFHNKKPTYKYLLTGVEGVTGIVMVVLMAIAFTLATHKFRKNGVRLPSPFNRLTGFNAFWYSHHLTAIVYIL 506 (875)
Q Consensus 427 ~~~~~l~~~f~~~~p~~~~~~~~~~g~tGiv~lvll~il~~~S~~~~Rr~~~~~~~~~~~~~~Ye~F~~~H~L~~i~~il 506 (875)
..+..+ + .| ...+...++|+++++++++|+++|++++||+. ||+|+++|+++++++++
T Consensus 235 ~~~~~~---~------~w-~~~~~~~i~G~iAlv~~~il~v~Sl~~iRR~~------------YE~F~~~HiL~~v~~v~ 292 (702)
T PLN02292 235 NQVSQM---L------EW-DRTGVSNLAGEIALVAGLVMWATTYPKIRRRF------------FEVFFYTHYLYIVFMLF 292 (702)
T ss_pred Cchhhh---h------hc-cccchHHHHHHHHHHHHHHHHHHhhHHHHhcc------------cHhHHHHHHHHHHHHee
Confidence 111111 0 01 11234568999999999999999999999997 99999999999877777
Q ss_pred HHHHhhhhhhhccccccchhhhhhHhHHHHHhhccceeeEeeeeeeEEEEEEeeCCCEEEEEEecCCCcccCCCcEEEEE
Q 002830 507 LIVHGNFLYLAHEWYQKTTWMYISAPLLLYVAERNLRTRRSGHFSAKDLKVSVLPGNVLSIVMSKPNGFRYRSGQYIFLQ 586 (875)
Q Consensus 507 l~~H~~~~~~~~~w~~~~~w~y~~~~~~ly~~drl~R~~r~~~~~~~i~~v~~l~~~vl~L~~~~p~~~~ykpGQyvfL~ 586 (875)
+++|.... .+.+.++++++|++||++|.+|.+ ..+++++++.+++++++|++++|+.++|+||||+||+
T Consensus 293 ~~~H~~~~----------~~~~~~~~i~l~~~DR~lR~~r~~-~~~~Iv~~~~l~~dvv~L~~~~~~~~~~~PGQ~vfL~ 361 (702)
T PLN02292 293 FVFHVGIS----------FALISFPGFYIFLVDRFLRFLQSR-NNVKLVSARVLPCDTVELNFSKNPMLMYSPTSIMFVN 361 (702)
T ss_pred eehhhhhH----------HHHHHHHHHHHHHHHHHHHHHHhh-cceEEEEEEEcCCCEEEEEEEcCCCCCcCCCCeEEEE
Confidence 78886321 112334456899999999999864 6788999999999999999999988999999999999
Q ss_pred CCCCCCcccccceeecCCC--CCeEEEEEEecCCCcHHHHHHhhhcccccccCCccccccCCCCCCCCCEEEEECcCCCC
Q 002830 587 CPTISSFEWHPFSITSAPG--DDHLSVHIRIVGDWTHELKQVFTEDKDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAA 664 (875)
Q Consensus 587 ~p~is~~e~HPFTItSaP~--dd~lsl~IR~~G~wT~~L~~~~~~~~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~ 664 (875)
+|..+.+|+|||||+|+|+ +++++++||..|+||++|.+.++. |.. ....+|.|+||||.+
T Consensus 362 ~P~~s~~q~HPFTIaSsp~~~~~~l~l~IK~~G~~T~~L~~~l~~--------gd~---------i~~~~V~VeGPYG~~ 424 (702)
T PLN02292 362 IPSISKLQWHPFTITSSSKLEPEKLSVMIKSQGKWSTKLYHMLSS--------SDQ---------IDRLAVSVEGPYGPA 424 (702)
T ss_pred EccCCccceeeeEeeccCCCCCCEEEEEEEcCCchhHHHHHhCCC--------CCc---------cccceEEEECCccCC
Confidence 9999999999999999984 578999999999999999987532 210 013689999999998
Q ss_pred CCCCCCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhccccCCCcccccccCcCCCCCCCCCCccccCCCCCCCCCceEEE
Q 002830 665 AQDYSNYDVLLLVGLGIGATPFISILRDLLNNTREELMDSNTDSSRSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYF 744 (875)
Q Consensus 665 ~~~~~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f 744 (875)
..+..+++++++||||+||||++|++++++++... +..+.++++|
T Consensus 425 ~~~~~~~~~vvlIAGGiGITP~lsil~~L~~~~~~-----------------------------------~~~~~~~V~L 469 (702)
T PLN02292 425 STDFLRHESLVMVSGGSGITPFISIIRDLIYTSST-----------------------------------ETCKIPKITL 469 (702)
T ss_pred ccccccCCcEEEEEeccCHHHHHHHHHHHHhcccc-----------------------------------ccCCCCcEEE
Confidence 76677789999999999999999999999876211 0112478999
Q ss_pred EEEeCCCCchhhHHHHHHHH---HhhcCCCcEEEEEEecccccCCC----------------------hh-------hHH
Q 002830 745 YWVTREPGSFEWFKGVMDQV---AEMDLKGQIELHNYLTSVYEEGD----------------------AR-------STL 792 (875)
Q Consensus 745 ~Wv~R~~~s~eWf~~~L~el---~e~~~~~~iev~~ylT~~~~~~d----------------------~r-------s~l 792 (875)
+|++|+.+++.|..+...|+ .+...+..+++++|+|+..++++ .. +.+
T Consensus 470 Iw~vR~~~Dl~~ld~l~~e~~~~~~l~~~~~~~i~iyvTr~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~Gp~~~~ 549 (702)
T PLN02292 470 ICAFKNSSDLSMLDLILPTSGLETELSSFIDIQIKAFVTREKEAGVKESTGNMNIIKTLWFKPNLSDQPISPILGPNSWL 549 (702)
T ss_pred EEEECCHHHhhHHHHHHHhhhhHHHHhhcCCceEEEEEeCCCCCCCcccccchhhhhhhcCCCCCCCCceEEEeCCCchH
Confidence 99999999876544444433 23333457999999998543221 00 000
Q ss_pred ----------------HHHHH-----hh----------------------------------hcc---c-CCccccc---
Q 002830 793 ----------------ITMVQ-----AL----------------------------------NHA---K-HGVDILS--- 810 (875)
Q Consensus 793 ----------------~~m~q-----~l----------------------------------~~~---k-~g~divs--- 810 (875)
+...+ .. |.. + ++..+-.
T Consensus 550 w~~~~~~~s~~~f~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 629 (702)
T PLN02292 550 WLAAILSSSFLIFIIIIAIITRYHIYPIDQNSNKYTLAYKSLIYLLVISISVVATSTAAMLWNKKKYYKKSSQQVDNVDS 629 (702)
T ss_pred HHHHHHHHHHHHHHHHHHHhheeEeccccCCCCCCccHHHHHHHHHHHHHHhhhhhhHHHhhcccccccchhcccccccc
Confidence 00000 00 000 0 0000000
Q ss_pred ------------CCeeeeecC-CCCHHHHHHHHHhhCCCCeEEEEEeCchHHHHHHHHHHHhhccCCCCeEEEEEecC
Q 002830 811 ------------GTRVRTHFA-RPNWKEVFSRVATKHPNATIGVFYCGMPVLAKELKKLSHELTHRTSTRFEFHKEYF 875 (875)
Q Consensus 811 ------------g~rv~~~~g-RPd~~~v~~~~~~~~~~~~v~Vf~CGPp~l~~~lr~~~~~~~~~~~~~f~fhkE~F 875 (875)
-....+|+| |||+++++. +..+++|||.+|||++|-.+|.+.|...+ .+.++||.-+|
T Consensus 630 ~~~~~~~~~~~~~~~~~~~~g~rp~~~~i~~----~~~~~~vgvlv~gp~~~~~~va~~c~s~~---~~~~~~~s~sf 700 (702)
T PLN02292 630 PREIESSPQQLLVQRTNIHYGERPNLNKLLV----GLKGSSVGVLVCGPKKMRQKVAKICSSGL---AENLHFESISF 700 (702)
T ss_pred ccccccCcccccccceeeeccCCCCHHHHHH----hcCCCceeEEEECcHHHHHHHHHHHhcCC---CcceeEEeecc
Confidence 012567887 999999994 44578999999999999999999999865 46788887776
No 5
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.1e-39 Score=341.66 Aligned_cols=382 Identities=22% Similarity=0.290 Sum_probs=257.1
Q ss_pred HHHhhHHHHHHHHhhhhhhhhhccccccccccccchhhHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCccc--cc
Q 002830 356 ETLKLNMALILLPVCRNTLTWLRSTRARYFVPFDDNINFHKTIACAIIIGVVLHVGNHLACDFPRLVNSSPEEFAP--MS 433 (875)
Q Consensus 356 ~~l~~n~~lill~v~Rn~lt~Lr~~~l~~~vp~d~~~~fHk~ia~~i~v~~~iH~i~h~~~~f~~l~~~~~~~~~~--l~ 433 (875)
.+....|+++++++.|-. |+..| +-+.|..+.+|||+|..++++.+.|-+.....++ .....-.+.+ ++
T Consensus 46 ~iaL~~msl~~~LA~R~~--~iE~~----~~GlD~~Y~~HK~~sIlailL~l~H~~~~~~g~w---~~~~~l~~k~a~v~ 116 (438)
T COG4097 46 FIALALMSLIFLLATRLP--LIEAW----FNGLDKIYRFHKYTSILAILLLLAHNFILFIGNW---LTLQLLNFKPAPVK 116 (438)
T ss_pred HHHHHHHHHHHHHHhchH--HHhhh----hhhhhHHhHHHHHHHHHHHHHHHHHHHHHHcCcc---hhcccccccccccc
Confidence 344567889999999942 34443 2368999999999999999999999998654332 1111111110 11
Q ss_pred cccccCCccchhhcccchhHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHhhh
Q 002830 434 TQFHNKKPTYKYLLTGVEGVTGIVMVVLMAIAFTLATHKFRKNGVRLPSPFNRLTGFNAFWYSHHLTAIVYILLIVHGNF 513 (875)
Q Consensus 434 ~~f~~~~p~~~~~~~~~~g~tGiv~lvll~il~~~S~~~~Rr~~~~~~~~~~~~~~Ye~F~~~H~L~~i~~ill~~H~~~ 513 (875)
.+.. -.|...+.+..+..++ ++.++++ +.-|- ++ +||.|.+.|.+++++|++..+|.+.
T Consensus 117 ~~l~----~~~~s~~elG~~~~yi-~~~lllV---~~l~~-----~i--------~Ye~WR~~H~lm~vvYilg~~H~~~ 175 (438)
T COG4097 117 PSLA----GMWRSAKELGEWSAYI-FIGLLLV---WRLWL-----NI--------GYENWRIAHRLMAVVYILGLLHSYG 175 (438)
T ss_pred hhhh----hhhHHHHHHHHHHHHH-HHHHHHH---HHHHH-----hc--------CchhHHHHHHHHHHHHHHHHHHHHH
Confidence 1000 0111112222222233 2222221 11121 22 4999999999999999999999875
Q ss_pred hhhhccccccch-hhhh---hHhHHHHHhhccceeeEeeeeeeEEEEEEeeCCCEEEEEEecCCCcccCCCcEEEEECCC
Q 002830 514 LYLAHEWYQKTT-WMYI---SAPLLLYVAERNLRTRRSGHFSAKDLKVSVLPGNVLSIVMSKPNGFRYRSGQYIFLQCPT 589 (875)
Q Consensus 514 ~~~~~~w~~~~~-w~y~---~~~~~ly~~drl~R~~r~~~~~~~i~~v~~l~~~vl~L~~~~p~~~~ykpGQyvfL~~p~ 589 (875)
..-...|..+.. |.-. ++....+......+..|+..+..+|+.+...+.++++++.....++-|+|||+.||.|+.
T Consensus 176 l~~~~~~s~~a~swl~~~~allG~l~~iysi~~y~~~s~~y~~~vt~~~r~~~~t~eit~~l~~~~~~qaGQFAfLk~~~ 255 (438)
T COG4097 176 LLNYLYLSWPAVSWLVIAFALLGLLAAIYSIFGYFGRSFPYLGKVTAPQRGNVDTLEITIGLQGPWLYQAGQFAFLKIEI 255 (438)
T ss_pred hcchhHhhccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccceEEechhhcCcchheeecccCCcccccCCceEEEEecc
Confidence 443334443433 4322 222222223334445677778889988999999988888887777789999999999997
Q ss_pred CC-CcccccceeecCCCCCeEEEEEEecCCCcHHHHHHhhhcccccccCCccccccCCCCCCCCCEEEEECcCCCCCCCC
Q 002830 590 IS-SFEWHPFSITSAPGDDHLSVHIRIVGDWTHELKQVFTEDKDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAAAQDY 668 (875)
Q Consensus 590 is-~~e~HPFTItSaP~dd~lsl~IR~~G~wT~~L~~~~~~~~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~~~~~ 668 (875)
-. .+..|||||+++.+...+.+.||+.||+|+.|++-+ ++| .++.+|||||.+. +
T Consensus 256 ~~~~~~~HPFTIa~s~~~sel~FsIK~LGD~Tk~l~dnL--------k~G--------------~k~~vdGPYG~F~--~ 311 (438)
T COG4097 256 EEFRMRPHPFTIACSHEGSELRFSIKALGDFTKTLKDNL--------KVG--------------TKLEVDGPYGKFD--F 311 (438)
T ss_pred ccccCCCCCeeeeeCCCCceEEEEehhhhhhhHHHHHhc--------cCC--------------ceEEEecCcceee--c
Confidence 43 357999999999887789999999999999999865 344 7999999999985 4
Q ss_pred CCCC-eEEEEEcCcCHHHHHHHHHHHHHhhhhhccccCCCcccccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEE
Q 002830 669 SNYD-VLLLVGLGIGATPFISILRDLLNNTREELMDSNTDSSRSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWV 747 (875)
Q Consensus 669 ~~yd-~vlLVagGiGITP~iSiLkdll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv 747 (875)
+.+. +-|.||||||||||+|.++.+.... ..+.|+++++
T Consensus 312 ~~g~~~QVWIAGGIGITPFis~l~~l~~~~----------------------------------------s~~~V~L~Y~ 351 (438)
T COG4097 312 ERGLNTQVWIAGGIGITPFISMLFTLAERK----------------------------------------SDPPVHLFYC 351 (438)
T ss_pred ccCCcccEEEecCcCcchHHHHHHhhcccc----------------------------------------cCCceEEEEE
Confidence 4443 3899999999999999999986531 1578999999
Q ss_pred eCCCCchhhHHHHHHHHHhhcCCCcEEEEEEecccccCCChhhHHHHHHHhhhcccCCcccccCCeeeeecCCCCHHHHH
Q 002830 748 TREPGSFEWFKGVMDQVAEMDLKGQIELHNYLTSVYEEGDARSTLITMVQALNHAKHGVDILSGTRVRTHFARPNWKEVF 827 (875)
Q Consensus 748 ~R~~~s~eWf~~~L~el~e~~~~~~iev~~ylT~~~~~~d~rs~l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~~~v~ 827 (875)
+|+.++. -+.++|+++++. .+++++|+--++. |. --|.+++-
T Consensus 352 ~~n~e~~-~y~~eLr~~~qk--l~~~~lHiiDSs~----~g-------------------------------~l~~e~le 393 (438)
T COG4097 352 SRNWEEA-LYAEELRALAQK--LPNVVLHIIDSSK----DG-------------------------------YLDQEDLE 393 (438)
T ss_pred ecCCchh-HHHHHHHHHHhc--CCCeEEEEecCCC----CC-------------------------------ccCHHHhh
Confidence 9999987 588888888863 3568888732221 11 00111111
Q ss_pred HHHHhhCCCCeEEEEEeCchHHHHHHHHHHHhhccCCCCeEEEEEecC
Q 002830 828 SRVATKHPNATIGVFYCGMPVLAKELKKLSHELTHRTSTRFEFHKEYF 875 (875)
Q Consensus 828 ~~~~~~~~~~~v~Vf~CGPp~l~~~lr~~~~~~~~~~~~~f~fhkE~F 875 (875)
+. .++ +..-.||+|||++|++.+++..+..+-+. + +||.|.|
T Consensus 394 r~--~~~-~~~~sv~fCGP~~m~dsL~r~l~~~~~~i--~-~~h~E~F 435 (438)
T COG4097 394 RY--PDR-PRTRSVFFCGPIKMMDSLRRDLKKQNVPI--T-NFHYEHF 435 (438)
T ss_pred cc--ccc-cCcceEEEEcCHHHHHHHHHHHHHcCCCH--H-HHHHHhc
Confidence 11 011 11237999999999999999999875432 1 8999987
No 6
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=100.00 E-value=4.6e-33 Score=289.53 Aligned_cols=205 Identities=35% Similarity=0.679 Sum_probs=167.5
Q ss_pred EEEEeeC-CCEEEEEEecCCCcccCCCcEEEEECCCC-CCcccccceeecCCCC--CeEEEEEEecCCCcHHHHHHhhhc
Q 002830 555 LKVSVLP-GNVLSIVMSKPNGFRYRSGQYIFLQCPTI-SSFEWHPFSITSAPGD--DHLSVHIRIVGDWTHELKQVFTED 630 (875)
Q Consensus 555 ~~v~~l~-~~vl~L~~~~p~~~~ykpGQyvfL~~p~i-s~~e~HPFTItSaP~d--d~lsl~IR~~G~wT~~L~~~~~~~ 630 (875)
++++.++ +++++|+++.|..+.|+||||++|++|.. +++++|||||+|+|.+ +.++|+||..+|+|+++.+.+.+.
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~pGq~v~l~~~~~~~~~~~hpfsias~~~~~~~~i~~~vk~~~G~~t~~~~~~~~~ 81 (210)
T cd06186 2 ATVELLPDSDVIRLTIPKPKPFKWKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLIIRAKKGFTTRLLRKALKS 81 (210)
T ss_pred eEEEEecCCCEEEEEEecCCCCccCCCCEEEEEeCCCCCCcccCCcEeeeCCCCCCCEEEEEEEecCChHHHHHHHHHhC
Confidence 3577888 99999999998889999999999999998 7889999999999976 899999999966666666554321
Q ss_pred ccccccCCccccccCCCCCCCCCEEEEECcCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhccccCCCccc
Q 002830 631 KDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAAAQDYSNYDVLLLVGLGIGATPFISILRDLLNNTREELMDSNTDSSR 710 (875)
Q Consensus 631 ~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~~~~~~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~~~~~~~~~ 710 (875)
.. . ....++.|+||||.+..+...++++||||||+||||++|++++++.+..+
T Consensus 82 ~~----~------------~~~~~v~v~GP~G~~~~~~~~~~~~vliagG~GItp~~s~l~~l~~~~~~----------- 134 (210)
T cd06186 82 PG----G------------GVSLKVLVEGPYGSSSEDLLSYDNVLLVAGGSGITFVLPILRDLLRRSSK----------- 134 (210)
T ss_pred cC----C------------CceeEEEEECCCCCCccChhhCCeEEEEeccccHhhhHHHHHHHHhhhhc-----------
Confidence 10 0 12478999999999874567899999999999999999999999876321
Q ss_pred ccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCchhhHHHHHHHHHhhcCCCcEEEEEEecccccCCChhh
Q 002830 711 SASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPGSFEWFKGVMDQVAEMDLKGQIELHNYLTSVYEEGDARS 790 (875)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~eWf~~~L~el~e~~~~~~iev~~ylT~~~~~~d~rs 790 (875)
....++++|+|++|+.+++.||.++|.+..+..... ++++|+|+
T Consensus 135 -------------------------~~~~~~v~l~w~~r~~~~~~~~~~~l~~~~~~~~~~--~~~i~~T~--------- 178 (210)
T cd06186 135 -------------------------TSRTRRVKLVWVVRDREDLEWFLDELRAAQELEVDG--EIEIYVTR--------- 178 (210)
T ss_pred -------------------------cCCccEEEEEEEECCHHHhHHHHHHHHhhhhccCCc--eEEEEEee---------
Confidence 013578999999999999999999887522222221 67888872
Q ss_pred HHHHHHHhhhcccCCcccccCCeeeeecCCCCHHHHHHHHHhhCCCCeEEEEEeCchHHHHHHHHHHHhhccCCCCeEEE
Q 002830 791 TLITMVQALNHAKHGVDILSGTRVRTHFARPNWKEVFSRVATKHPNATIGVFYCGMPVLAKELKKLSHELTHRTSTRFEF 870 (875)
Q Consensus 791 ~l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~~~v~~~~~~~~~~~~v~Vf~CGPp~l~~~lr~~~~~~~~~~~~~f~f 870 (875)
|++|||++|++++++.+.+ ++...+.|
T Consensus 179 --------------------------------------------------v~~CGp~~~~~~~~~~~~~---~~~~~~~~ 205 (210)
T cd06186 179 --------------------------------------------------VVVCGPPGLVDDVRNAVAK---KGGTGVEF 205 (210)
T ss_pred --------------------------------------------------EEEECchhhccHHHHHHhh---cCCCceEE
Confidence 9999999999999999988 56789999
Q ss_pred EEecC
Q 002830 871 HKEYF 875 (875)
Q Consensus 871 hkE~F 875 (875)
|+|+|
T Consensus 206 ~~e~f 210 (210)
T cd06186 206 HEESF 210 (210)
T ss_pred EeecC
Confidence 99998
No 7
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=99.95 E-value=1.6e-26 Score=245.79 Aligned_cols=225 Identities=23% Similarity=0.303 Sum_probs=169.9
Q ss_pred EEEEEeeCCCEEEEEEecCCCcccCCCcEEEEECCCC-CCcccccceeecCCCCCeEEEEEEec--CCCcHHHHHHhhhc
Q 002830 554 DLKVSVLPGNVLSIVMSKPNGFRYRSGQYIFLQCPTI-SSFEWHPFSITSAPGDDHLSVHIRIV--GDWTHELKQVFTED 630 (875)
Q Consensus 554 i~~v~~l~~~vl~L~~~~p~~~~ykpGQyvfL~~p~i-s~~e~HPFTItSaP~dd~lsl~IR~~--G~wT~~L~~~~~~~ 630 (875)
|++++.+++++.+++++.|..+.|+||||+.|++|.. +...+|||||+|.|.++.++|+||.. |..|+.|.++
T Consensus 2 v~~~~~~t~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~~~i~~~i~~~~~G~~s~~l~~l---- 77 (241)
T cd06195 2 VLKRRDWTDDLFSFRVTRDIPFRFQAGQFTKLGLPNDDGKLVRRAYSIASAPYEENLEFYIILVPDGPLTPRLFKL---- 77 (241)
T ss_pred eEEEEEcCCCEEEEEEcCCCCCccCCCCeEEEeccCCCCCeeeecccccCCCCCCeEEEEEEEecCCCCchHHhcC----
Confidence 5677888999999999988778899999999999976 66789999999999888999999976 8889888643
Q ss_pred ccccccCCccccccCCCCCCCCCEEEEE-CcCCCCCCCCC-CCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhccccCCCc
Q 002830 631 KDSTYAIGRAEFGQGGTNRRIQPRLLVD-GPYGAAAQDYS-NYDVLLLVGLGIGATPFISILRDLLNNTREELMDSNTDS 708 (875)
Q Consensus 631 ~~~~~~~G~s~~l~~~~~~~~~~~v~Id-GPYG~~~~~~~-~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~~~~~~~ 708 (875)
.+| ..+.+. ||||.+..+.. ..+++||||||+||||+++++++++...
T Consensus 78 -----~~G--------------d~v~v~~gP~G~f~~~~~~~~~~~vlIagGtGiaP~~~~l~~~~~~~----------- 127 (241)
T cd06195 78 -----KPG--------------DTIYVGKKPTGFLTLDEVPPGKRLWLLATGTGIAPFLSMLRDLEIWE----------- 127 (241)
T ss_pred -----CCC--------------CEEEECcCCCCceeecCCCCCceEEEEeeccchhhHHHHHHHHHhhC-----------
Confidence 234 789999 99999764433 5689999999999999999999987431
Q ss_pred ccccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCchhhHHHHHHHHHhhcCCCcEEEEEEecccccCCCh
Q 002830 709 SRSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPGSFEWFKGVMDQVAEMDLKGQIELHNYLTSVYEEGDA 788 (875)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~eWf~~~L~el~e~~~~~~iev~~ylT~~~~~~d~ 788 (875)
..++++++|++|+.+++ +|.+.|+++++. ....++++.++|+..+..
T Consensus 128 -----------------------------~~~~v~l~~~~r~~~d~-~~~~el~~l~~~-~~~~~~~~~~~s~~~~~~-- 174 (241)
T cd06195 128 -----------------------------RFDKIVLVHGVRYAEEL-AYQDEIEALAKQ-YNGKFRYVPIVSREKENG-- 174 (241)
T ss_pred -----------------------------CCCcEEEEEccCCHHHh-hhHHHHHHHHhh-cCCCEEEEEEECcCCccC--
Confidence 14789999999999998 788888888754 234688888777532110
Q ss_pred hhHHHHHHHhhhcccCCcccccCCeeeeecCCCCHH---HHHHHHHhhC-CCCeEEEEEeCchHHHHHHHHHHHhhccCC
Q 002830 789 RSTLITMVQALNHAKHGVDILSGTRVRTHFARPNWK---EVFSRVATKH-PNATIGVFYCGMPVLAKELKKLSHELTHRT 864 (875)
Q Consensus 789 rs~l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~~---~v~~~~~~~~-~~~~v~Vf~CGPp~l~~~lr~~~~~~~~~~ 864 (875)
| ..||.+-. +.+.+..... ......||+|||++|++.+++.+.+.+
T Consensus 175 ----------------------~-----~~g~v~~~l~~~~l~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~l~~~G--- 224 (241)
T cd06195 175 ----------------------A-----LTGRIPDLIESGELEEHAGLPLDPETSHVMLCGNPQMIDDTQELLKEKG--- 224 (241)
T ss_pred ----------------------C-----CceEhHHhhhhchhhHhhCCCCCcccCEEEEeCCHHHHHHHHHHHHHcC---
Confidence 0 01221110 1111211111 123457999999999999999998854
Q ss_pred CCe------EEEEEecC
Q 002830 865 STR------FEFHKEYF 875 (875)
Q Consensus 865 ~~~------f~fhkE~F 875 (875)
... -.+|.|.|
T Consensus 225 ~~~~~~~~~~~~~~E~~ 241 (241)
T cd06195 225 FSKNHRRKPGNITVEKY 241 (241)
T ss_pred CCccccCCCceEEEecC
Confidence 344 78999988
No 8
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=99.95 E-value=2.4e-26 Score=244.77 Aligned_cols=232 Identities=21% Similarity=0.285 Sum_probs=177.3
Q ss_pred hccceeeE----eeeeeeEEEEEEeeCCCEEEEEEecCCC-cccCCCcEEEEECCCCCCcccccceeecCCC--CCeEEE
Q 002830 539 ERNLRTRR----SGHFSAKDLKVSVLPGNVLSIVMSKPNG-FRYRSGQYIFLQCPTISSFEWHPFSITSAPG--DDHLSV 611 (875)
Q Consensus 539 drl~R~~r----~~~~~~~i~~v~~l~~~vl~L~~~~p~~-~~ykpGQyvfL~~p~is~~e~HPFTItSaP~--dd~lsl 611 (875)
||.+|.++ .....++|+++..+++++.++++..|.. ..|+||||+.|.+|..+...+|||||+|.|. ++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~i~l~~~~~~~~~~pGQ~i~l~~~~~~~~~~r~ysi~s~~~~~~~~l~~ 82 (243)
T cd06216 3 DFYLELINPLWSARELRARVVAVRPETADMVTLTLRPNRGWPGHRAGQHVRLGVEIDGVRHWRSYSLSSSPTQEDGTITL 82 (243)
T ss_pred hhhhhhcCCCcccceeEEEEEEEEEcCCCcEEEEEecCCCCCCcCCCceEEEEEEECCeEEEEEEeccCCCcCCCCeEEE
Confidence 55566543 3446788999999999999999997764 4799999999999866666789999999996 789999
Q ss_pred EEEec--CCCcHHHHHHhhhcccccccCCccccccCCCCCCCCCEEEEECcCCCCCCCCCCCCeEEEEEcCcCHHHHHHH
Q 002830 612 HIRIV--GDWTHELKQVFTEDKDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAAAQDYSNYDVLLLVGLGIGATPFISI 689 (875)
Q Consensus 612 ~IR~~--G~wT~~L~~~~~~~~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~~~~~~~yd~vlLVagGiGITP~iSi 689 (875)
+||.. |..|..|.+.+ .+| .++.|.||||.+..+-.++++++|||||+||||++|+
T Consensus 83 ~ik~~~~G~~s~~l~~~~--------~~G--------------d~v~i~gP~G~f~l~~~~~~~~v~iagG~Giap~~s~ 140 (243)
T cd06216 83 TVKAQPDGLVSNWLVNHL--------APG--------------DVVELSQPQGDFVLPDPLPPRLLLIAAGSGITPVMSM 140 (243)
T ss_pred EEEEcCCCcchhHHHhcC--------CCC--------------CEEEEECCceeeecCCCCCCCEEEEecCccHhHHHHH
Confidence 99999 88998887532 234 7899999999975443447899999999999999999
Q ss_pred HHHHHHhhhhhccccCCCcccccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCchhhHHHHHHHHHhhcC
Q 002830 690 LRDLLNNTREELMDSNTDSSRSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPGSFEWFKGVMDQVAEMDL 769 (875)
Q Consensus 690 Lkdll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~eWf~~~L~el~e~~~ 769 (875)
++++.... ..++++++|++|+.+++ ++.+.|+++++.
T Consensus 141 l~~~~~~~----------------------------------------~~~~i~l~~~~r~~~~~-~~~~el~~l~~~-- 177 (243)
T cd06216 141 LRTLLARG----------------------------------------PTADVVLLYYARTREDV-IFADELRALAAQ-- 177 (243)
T ss_pred HHHHHhcC----------------------------------------CCCCEEEEEEcCChhhh-HHHHHHHHHHHh--
Confidence 99987541 14689999999999887 788888887653
Q ss_pred CCcEEEEEEecccccCCChhhHHHHHHHhhhcccCCcccccCCeeeeecCCCCHHHHHHHHHhhCCCCeEEEEEeCchHH
Q 002830 770 KGQIELHNYLTSVYEEGDARSTLITMVQALNHAKHGVDILSGTRVRTHFARPNWKEVFSRVATKHPNATIGVFYCGMPVL 849 (875)
Q Consensus 770 ~~~iev~~ylT~~~~~~d~rs~l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~~~v~~~~~~~~~~~~v~Vf~CGPp~l 849 (875)
...++++.++|.. . ..||.+.. .+++..... ....||+|||++|
T Consensus 178 ~~~~~~~~~~s~~-----~----------------------------~~g~~~~~-~l~~~~~~~--~~~~vyvcGp~~m 221 (243)
T cd06216 178 HPNLRLHLLYTRE-----E----------------------------LDGRLSAA-HLDAVVPDL--ADRQVYACGPPGF 221 (243)
T ss_pred CCCeEEEEEEcCC-----c----------------------------cCCCCCHH-HHHHhccCc--ccCeEEEECCHHH
Confidence 2358888777742 0 01344332 233332211 2348999999999
Q ss_pred HHHHHHHHHhhccCCCCeEEEEEecC
Q 002830 850 AKELKKLSHELTHRTSTRFEFHKEYF 875 (875)
Q Consensus 850 ~~~lr~~~~~~~~~~~~~f~fhkE~F 875 (875)
++++++.+.+. +.. -..|.|.|
T Consensus 222 ~~~~~~~l~~~---Gv~-~~i~~e~F 243 (243)
T cd06216 222 LDAAEELLEAA---GLA-DRLHTERF 243 (243)
T ss_pred HHHHHHHHHHC---CCc-cceeeccC
Confidence 99999999874 455 66899987
No 9
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=99.95 E-value=3.6e-26 Score=243.95 Aligned_cols=231 Identities=18% Similarity=0.267 Sum_probs=176.2
Q ss_pred eeeeEEEEEEeeCCCEEEEEEecCCC---cccCCCcEEEEECCCCC--CcccccceeecCCCCCeEEEEEEec--CCCcH
Q 002830 549 HFSAKDLKVSVLPGNVLSIVMSKPNG---FRYRSGQYIFLQCPTIS--SFEWHPFSITSAPGDDHLSVHIRIV--GDWTH 621 (875)
Q Consensus 549 ~~~~~i~~v~~l~~~vl~L~~~~p~~---~~ykpGQyvfL~~p~is--~~e~HPFTItSaP~dd~lsl~IR~~--G~wT~ 621 (875)
+..++|++++.+++++.+|++..|.. +.|+||||+.|.++..+ ...+|||||+|.|.++.+.|+||.. |..|+
T Consensus 6 ~~~~~v~~~~~~s~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~ySi~s~~~~~~l~~~ik~~~~G~~s~ 85 (247)
T cd06184 6 FRPFVVARKVAESEDITSFYLEPADGGPLPPFLPGQYLSVRVKLPGLGYRQIRQYSLSDAPNGDYYRISVKREPGGLVSN 85 (247)
T ss_pred cEEEEEEEEEEcCCCeEEEEEEeCCCCcCCCCCCCCEEEEEEecCCCCCceeEEeEeccCCCCCeEEEEEEEcCCCcchH
Confidence 45667888899999999999988753 68999999999997543 4689999999999878999999998 88898
Q ss_pred HHHHHhhhcccccccCCccccccCCCCCCCCCEEEEECcCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhc
Q 002830 622 ELKQVFTEDKDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAAAQDYSNYDVLLLVGLGIGATPFISILRDLLNNTREEL 701 (875)
Q Consensus 622 ~L~~~~~~~~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~~~~~~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~ 701 (875)
.|.+.+ .+| .++.|.||||.+..+...++++||||||+||||++|++++++++.
T Consensus 86 ~l~~~~--------~~G--------------d~v~i~gP~G~~~~~~~~~~~llliagGtGiaP~~~~l~~~~~~~---- 139 (247)
T cd06184 86 YLHDNV--------KVG--------------DVLEVSAPAGDFVLDEASDRPLVLISAGVGITPMLSMLEALAAEG---- 139 (247)
T ss_pred HHHhcC--------CCC--------------CEEEEEcCCCceECCCCCCCcEEEEeccccHhHHHHHHHHHHhcC----
Confidence 887632 234 789999999997654446789999999999999999999987651
Q ss_pred cccCCCcccccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCchhhHHHHHHHHHhhcCCCcEEEEEEecc
Q 002830 702 MDSNTDSSRSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPGSFEWFKGVMDQVAEMDLKGQIELHNYLTS 781 (875)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~eWf~~~L~el~e~~~~~~iev~~ylT~ 781 (875)
..++++|+|++|+.+++ +|.+.|+++++. ..+++++.++|+
T Consensus 140 ------------------------------------~~~~i~l~~~~r~~~~~-~~~~~l~~l~~~--~~~~~~~~~~s~ 180 (247)
T cd06184 140 ------------------------------------PGRPVTFIHAARNSAVH-AFRDELEELAAR--LPNLKLHVFYSE 180 (247)
T ss_pred ------------------------------------CCCcEEEEEEcCchhhH-HHHHHHHHHHhh--CCCeEEEEEECC
Confidence 14679999999999996 688888888654 246888888875
Q ss_pred cccCCChhhHHHHHHHhhhcccCCcccccCCeeeeecCCCCHHHHHHHHHhhCCCCeEEEEEeCchHHHHHHHHHHHhhc
Q 002830 782 VYEEGDARSTLITMVQALNHAKHGVDILSGTRVRTHFARPNWKEVFSRVATKHPNATIGVFYCGMPVLAKELKKLSHELT 861 (875)
Q Consensus 782 ~~~~~d~rs~l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~~~v~~~~~~~~~~~~v~Vf~CGPp~l~~~lr~~~~~~~ 861 (875)
..+.... +...+.||++...+.+ . .+.....||+|||++|++++++.+.+.
T Consensus 181 ~~~~~~~------------------------~~~~~~g~~~~~~l~~-~---~~~~~~~v~icGp~~m~~~v~~~l~~~- 231 (247)
T cd06184 181 PEAGDRE------------------------EDYDHAGRIDLALLRE-L---LLPADADFYLCGPVPFMQAVREGLKAL- 231 (247)
T ss_pred CCccccc------------------------ccccccCccCHHHHhh-c---cCCCCCEEEEECCHHHHHHHHHHHHHc-
Confidence 3221000 0012336776553332 1 122346799999999999999999874
Q ss_pred cCCCCeEEEEEecC
Q 002830 862 HRTSTRFEFHKEYF 875 (875)
Q Consensus 862 ~~~~~~f~fhkE~F 875 (875)
+...-.+|.|.|
T Consensus 232 --G~~~~~i~~e~f 243 (247)
T cd06184 232 --GVPAERIHYEVF 243 (247)
T ss_pred --CCCHHHeeeecc
Confidence 445557888877
No 10
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=99.95 E-value=2.6e-26 Score=241.61 Aligned_cols=219 Identities=24% Similarity=0.360 Sum_probs=166.6
Q ss_pred EEEEEEeeCCCEEEEEEecCCCcccCCCcEEEEECCCCCCcccccceeecCCC-CCeEEEEEEec--CCCcHHHHHHhhh
Q 002830 553 KDLKVSVLPGNVLSIVMSKPNGFRYRSGQYIFLQCPTISSFEWHPFSITSAPG-DDHLSVHIRIV--GDWTHELKQVFTE 629 (875)
Q Consensus 553 ~i~~v~~l~~~vl~L~~~~p~~~~ykpGQyvfL~~p~is~~e~HPFTItSaP~-dd~lsl~IR~~--G~wT~~L~~~~~~ 629 (875)
+|++++.+++++.+|+++.|..++|+||||++|.+|.. ++|||||+|.|. ++.++++||.. |.+|+.|.+.+
T Consensus 2 ~v~~~~~~t~~~~~l~l~~~~~~~~~pGQ~v~l~~~~~---~~r~ySi~s~~~~~~~l~~~vk~~~~G~~s~~l~~~l-- 76 (224)
T cd06189 2 KVESIEPLNDDVYRVRLKPPAPLDFLAGQYLDLLLDDG---DKRPFSIASAPHEDGEIELHIRAVPGGSFSDYVFEEL-- 76 (224)
T ss_pred EEEEEEeCCCceEEEEEecCCCcccCCCCEEEEEcCCC---CceeeecccCCCCCCeEEEEEEecCCCccHHHHHHhc--
Confidence 57788889999999999988888999999999999863 589999999997 68999999998 77999888643
Q ss_pred cccccccCCccccccCCCCCCCCCEEEEECcCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhccccCCCcc
Q 002830 630 DKDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAAAQDYSNYDVLLLVGLGIGATPFISILRDLLNNTREELMDSNTDSS 709 (875)
Q Consensus 630 ~~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~~~~~~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~~~~~~~~ 709 (875)
.+| .+|.|.||||.+.....+++++||||||+||||++|++++++.+.
T Consensus 77 ------~~G--------------~~v~i~gP~G~~~~~~~~~~~ivliagG~GiaP~~~~l~~l~~~~------------ 124 (224)
T cd06189 77 ------KEN--------------GLVRIEGPLGDFFLREDSDRPLILIAGGTGFAPIKSILEHLLAQG------------ 124 (224)
T ss_pred ------cCC--------------CEEEEecCCccEEeccCCCCCEEEEecCcCHHHHHHHHHHHHhcC------------
Confidence 234 689999999998654445789999999999999999999998651
Q ss_pred cccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCchhhHHHHHHHHHhhcCCCcEEEEEEecccccCCChh
Q 002830 710 RSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPGSFEWFKGVMDQVAEMDLKGQIELHNYLTSVYEEGDAR 789 (875)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~eWf~~~L~el~e~~~~~~iev~~ylT~~~~~~d~r 789 (875)
..++++|+|++|+.+++ ++.+.++++++. ..++.++.++++..+..+
T Consensus 125 ----------------------------~~~~v~l~~~~r~~~~~-~~~~~l~~l~~~--~~~~~~~~~~s~~~~~~~-- 171 (224)
T cd06189 125 ----------------------------SKRPIHLYWGARTEEDL-YLDELLEAWAEA--HPNFTYVPVLSEPEEGWQ-- 171 (224)
T ss_pred ----------------------------CCCCEEEEEecCChhhc-cCHHHHHHHHHh--CCCeEEEEEeCCCCcCCc--
Confidence 14689999999999987 577888888764 235777777764311000
Q ss_pred hHHHHHHHhhhcccCCcccccCCeeeeecCCCCHHHHHHHHHhhC-CCCeEEEEEeCchHHHHHHHHHHHhhccCCCCeE
Q 002830 790 STLITMVQALNHAKHGVDILSGTRVRTHFARPNWKEVFSRVATKH-PNATIGVFYCGMPVLAKELKKLSHELTHRTSTRF 868 (875)
Q Consensus 790 s~l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~~~v~~~~~~~~-~~~~v~Vf~CGPp~l~~~lr~~~~~~~~~~~~~f 868 (875)
| ..|+ ..+. +.+.. +.....||+|||+.|++++++.+.+. +...-
T Consensus 172 ---------------------g-----~~g~--v~~~---l~~~~~~~~~~~v~vCGp~~m~~~~~~~l~~~---G~~~~ 217 (224)
T cd06189 172 ---------------------G-----RTGL--VHEA---VLEDFPDLSDFDVYACGSPEMVYAARDDFVEK---GLPEE 217 (224)
T ss_pred ---------------------c-----cccc--HHHH---HHhhccCccccEEEEECCHHHHHHHHHHHHHc---CCCHH
Confidence 0 0011 1111 11111 11235699999999999999999885 44566
Q ss_pred EEEEecC
Q 002830 869 EFHKEYF 875 (875)
Q Consensus 869 ~fhkE~F 875 (875)
.+|.|.|
T Consensus 218 ~i~~e~f 224 (224)
T cd06189 218 NFFSDAF 224 (224)
T ss_pred HcccCCC
Confidence 7888887
No 11
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=99.95 E-value=1.8e-26 Score=242.45 Aligned_cols=192 Identities=22% Similarity=0.339 Sum_probs=147.6
Q ss_pred EEEeeCCCEEEEEEecCCC---cccCCCcEEEEECCCCC----------------CcccccceeecCCCC----CeEEEE
Q 002830 556 KVSVLPGNVLSIVMSKPNG---FRYRSGQYIFLQCPTIS----------------SFEWHPFSITSAPGD----DHLSVH 612 (875)
Q Consensus 556 ~v~~l~~~vl~L~~~~p~~---~~ykpGQyvfL~~p~is----------------~~e~HPFTItSaP~d----d~lsl~ 612 (875)
+.+.++++|.++++..|.+ +.|+|||||.|++|... ...+|||||+|+|++ +.+.|+
T Consensus 2 ~~~~~s~~v~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~p~~~~~~~~R~ySias~p~~~~~~~~l~l~ 81 (220)
T cd06197 2 KSEVITPTLTRFTFELSPPDVVGKWTPGQYITLDFSSELDSGYSHMADDDPQSLNDDFVRTFTVSSAPPHDPATDEFEIT 81 (220)
T ss_pred cceecccceeEEEEEecCCccccccCCCceEEEEccccccccccccccCCcchhcCCceeeEEeecCCccCCCCCEEEEE
Confidence 3467889999999998877 89999999999998531 134688999999964 689999
Q ss_pred EEecCCCcHHHHHHhhhcccccccCCccccccCCCCCCCCCEEEEECcCCCCCCCC---CCCCeEEEEEcCcCHHHHHHH
Q 002830 613 IRIVGDWTHELKQVFTEDKDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAAAQDY---SNYDVLLLVGLGIGATPFISI 689 (875)
Q Consensus 613 IR~~G~wT~~L~~~~~~~~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~~~~~---~~yd~vlLVagGiGITP~iSi 689 (875)
||..|+||+.|.+...... . ....+.|+||||.+..+. ..++++|||||||||||++|+
T Consensus 82 vk~~G~~T~~L~~~~~~~~----~--------------~G~~v~v~gP~G~f~~~~~~~~~~~~illIagG~GItP~~si 143 (220)
T cd06197 82 VRKKGPVTGFLFQVARRLR----E--------------QGLEVPVLGVGGEFTLSLPGEGAERKMVWIAGGVGITPFLAM 143 (220)
T ss_pred EEeCCCCCHHHHHhhhccc----C--------------CCceEEEEecCCcccCCcccccCCceEEEEecccchhhHHHH
Confidence 9999999999998753210 0 137899999999976432 357899999999999999999
Q ss_pred HHHHHHhhhhhccccCCCcccccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCchhhHHHHHHHHHhhcC
Q 002830 690 LRDLLNNTREELMDSNTDSSRSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPGSFEWFKGVMDQVAEMDL 769 (875)
Q Consensus 690 Lkdll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~eWf~~~L~el~e~~~ 769 (875)
+++++.+.. ..++++|+|++|+.+++ +|.++|.++.+.
T Consensus 144 l~~l~~~~~---------------------------------------~~~~v~l~~~~r~~~~~-~~~~el~~~~~~-- 181 (220)
T cd06197 144 LRAILSSRN---------------------------------------TTWDITLLWSLREDDLP-LVMDTLVRFPGL-- 181 (220)
T ss_pred HHHHHhccc---------------------------------------CCCcEEEEEEecchhhH-HHHHHHHhccCC--
Confidence 999875411 14689999999999986 676666443321
Q ss_pred CCcEEEEEEecccccCCChhhHHHHHHHhhhcccCCcccccCCeeeeecCCCCHHHHHHHHHhhCCCCeEEEEEeCchHH
Q 002830 770 KGQIELHNYLTSVYEEGDARSTLITMVQALNHAKHGVDILSGTRVRTHFARPNWKEVFSRVATKHPNATIGVFYCGMPVL 849 (875)
Q Consensus 770 ~~~iev~~ylT~~~~~~d~rs~l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~~~v~~~~~~~~~~~~v~Vf~CGPp~l 849 (875)
.++++.+.| + .||+|||++|
T Consensus 182 --~~~~~~~~~--------------------------------------~--------------------~v~~CGP~~m 201 (220)
T cd06197 182 --PVSTTLFIT--------------------------------------S--------------------EVYLCGPPAL 201 (220)
T ss_pred --ceEEEEEEe--------------------------------------c--------------------cEEEECcHHH
Confidence 122222111 0 5999999999
Q ss_pred HHHHHHHHHhhccCCCCeEEEEEecC
Q 002830 850 AKELKKLSHELTHRTSTRFEFHKEYF 875 (875)
Q Consensus 850 ~~~lr~~~~~~~~~~~~~f~fhkE~F 875 (875)
++.+.+.+.+. .+|.|.|
T Consensus 202 ~~~~~~~~~~~--------~~~~e~f 219 (220)
T cd06197 202 EKAVLEWLEGK--------KVHRESF 219 (220)
T ss_pred HHHHHHHhhhc--------eeEeccc
Confidence 99999998863 7899988
No 12
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.95 E-value=4.3e-26 Score=238.51 Aligned_cols=207 Identities=28% Similarity=0.457 Sum_probs=154.8
Q ss_pred CCEEEEEEecCCC-cccCCCcEEEEECCCCCCcccccceeecCCCC-CeEEEEEEecCCCcHHHHHHhhhcccccccCCc
Q 002830 562 GNVLSIVMSKPNG-FRYRSGQYIFLQCPTISSFEWHPFSITSAPGD-DHLSVHIRIVGDWTHELKQVFTEDKDSTYAIGR 639 (875)
Q Consensus 562 ~~vl~L~~~~p~~-~~ykpGQyvfL~~p~is~~e~HPFTItSaP~d-d~lsl~IR~~G~wT~~L~~~~~~~~~~~~~~G~ 639 (875)
.++.+|++..+.+ +.|+|||||+|.+|..+.+++|||||+|.|.+ +.++|+||..|++|+.|.+.+ .+|
T Consensus 7 ~~~~~i~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~~~l~l~vk~~G~~t~~l~~~l--------~~G- 77 (216)
T cd06198 7 RPTTTLTLEPRGPALGHRAGQFAFLRFDASGWEEPHPFTISSAPDPDGRLRFTIKALGDYTRRLAERL--------KPG- 77 (216)
T ss_pred cceEEEEEeeCCCCCCcCCCCEEEEEeCCCCCCCCCCcEEecCCCCCCeEEEEEEeCChHHHHHHHhC--------CCC-
Confidence 3577888876655 78999999999998766679999999999976 599999999999999998433 234
Q ss_pred cccccCCCCCCCCCEEEEECcCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhccccCCCcccccccCcCCC
Q 002830 640 AEFGQGGTNRRIQPRLLVDGPYGAAAQDYSNYDVLLLVGLGIGATPFISILRDLLNNTREELMDSNTDSSRSASLNSCTS 719 (875)
Q Consensus 640 s~~l~~~~~~~~~~~v~IdGPYG~~~~~~~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (875)
..+.|.||||.+..+.. ++++||||||+||||++|++++++.+.
T Consensus 78 -------------~~v~i~gP~G~~~~~~~-~~~~vlia~GtGiap~~~~l~~~~~~~---------------------- 121 (216)
T cd06198 78 -------------TRVTVEGPYGRFTFDDR-RARQIWIAGGIGITPFLALLEALAARG---------------------- 121 (216)
T ss_pred -------------CEEEEECCCCCCccccc-CceEEEEccccCHHHHHHHHHHHHhcC----------------------
Confidence 78999999999764333 789999999999999999999987541
Q ss_pred CCCCCCCccccCCCCCCCCCceEEEEEEeCCCCchhhHHHHHHHHHhhcCCCcEEEEEEecccccCCChhhHHHHHHHhh
Q 002830 720 SNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPGSFEWFKGVMDQVAEMDLKGQIELHNYLTSVYEEGDARSTLITMVQAL 799 (875)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~eWf~~~L~el~e~~~~~~iev~~ylT~~~~~~d~rs~l~~m~q~l 799 (875)
..++++++|++|+.+++ +|.+.|+++++.. .++++...+.. +
T Consensus 122 ------------------~~~~v~l~~~~r~~~~~-~~~~~l~~l~~~~---~~~~~~~~~~~----~------------ 163 (216)
T cd06198 122 ------------------DARPVTLFYCVRDPEDA-VFLDELRALAAAA---GVVLHVIDSPS----D------------ 163 (216)
T ss_pred ------------------CCceEEEEEEECCHHHh-hhHHHHHHHHHhc---CeEEEEEeCCC----C------------
Confidence 14689999999999987 6888888876542 46666543321 0
Q ss_pred hcccCCcccccCCeeeeecCCCCHHHHHHHHHhhCCCCeEEEEEeCchHHHHHHHHHHHhhccCCCCeEEEEEecC
Q 002830 800 NHAKHGVDILSGTRVRTHFARPNWKEVFSRVATKHPNATIGVFYCGMPVLAKELKKLSHELTHRTSTRFEFHKEYF 875 (875)
Q Consensus 800 ~~~k~g~divsg~rv~~~~gRPd~~~v~~~~~~~~~~~~v~Vf~CGPp~l~~~lr~~~~~~~~~~~~~f~fhkE~F 875 (875)
++.+...++.... .+.....||+|||+.|++++++.+.+. +...-..|.|.|
T Consensus 164 -------------------~~~~~~~~~~~~~--~~~~~~~vyicGp~~m~~~v~~~l~~~---Gv~~~~I~~E~f 215 (216)
T cd06198 164 -------------------GRLTLEQLVRALV--PDLADADVWFCGPPGMADALEKGLRAL---GVPARRFHYERF 215 (216)
T ss_pred -------------------cccchhhhhhhcC--CCcCCCeEEEECcHHHHHHHHHHHHHc---CCChHhcchhhc
Confidence 0111111111111 112345799999999999999999874 455667788877
No 13
>PRK08051 fre FMN reductase; Validated
Probab=99.94 E-value=6e-26 Score=240.36 Aligned_cols=223 Identities=22% Similarity=0.273 Sum_probs=163.3
Q ss_pred eeeEEEEEEeeCCCEEEEEEecCCCcccCCCcEEEEECCCCCCcccccceeecCC-CCCeEEEEEEecCC--CcHHHHHH
Q 002830 550 FSAKDLKVSVLPGNVLSIVMSKPNGFRYRSGQYIFLQCPTISSFEWHPFSITSAP-GDDHLSVHIRIVGD--WTHELKQV 626 (875)
Q Consensus 550 ~~~~i~~v~~l~~~vl~L~~~~p~~~~ykpGQyvfL~~p~is~~e~HPFTItSaP-~dd~lsl~IR~~G~--wT~~L~~~ 626 (875)
..++|.++..+++++..|++..+..+.|+||||++|++|.. +.|||||+|.| +++.++|+||..++ .+..+.+.
T Consensus 3 ~~~~v~~i~~~~~~~~~l~l~~~~~~~~~pGQ~v~l~~~~~---~~r~ySias~p~~~~~l~~~v~~~~~~~~~~~~~~~ 79 (232)
T PRK08051 3 LSCKVTSVEAITDTVYRVRLVPEAPFSFRAGQYLMVVMGEK---DKRPFSIASTPREKGFIELHIGASELNLYAMAVMER 79 (232)
T ss_pred eEEEEEEEecCCCCeEEEEEecCCCCccCCCCEEEEEcCCC---cceeecccCCCCCCCcEEEEEEEcCCCcchHHHHHH
Confidence 46788899999999999999887788999999999999753 67999999999 47889999999764 45555432
Q ss_pred hhhcccccccCCccccccCCCCCCCCCEEEEECcCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhccccCC
Q 002830 627 FTEDKDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAAAQDYSNYDVLLLVGLGIGATPFISILRDLLNNTREELMDSNT 706 (875)
Q Consensus 627 ~~~~~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~~~~~~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~~~~~ 706 (875)
+ .+| ..|.|+||||.+..+-...+++||||||+||||++|++++++...
T Consensus 80 l--------~~G--------------~~v~v~gP~G~~~~~~~~~~~~vliagG~GiaP~~~~l~~~~~~~--------- 128 (232)
T PRK08051 80 I--------LKD--------------GEIEVDIPHGDAWLREESERPLLLIAGGTGFSYARSILLTALAQG--------- 128 (232)
T ss_pred c--------CCC--------------CEEEEEcCCCceEccCCCCCcEEEEecCcCcchHHHHHHHHHHhC---------
Confidence 2 234 789999999998654345678999999999999999999997641
Q ss_pred CcccccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCchhhHHHHHHHHHhhcCCCcEEEEEEecccccCC
Q 002830 707 DSSRSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPGSFEWFKGVMDQVAEMDLKGQIELHNYLTSVYEEG 786 (875)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~eWf~~~L~el~e~~~~~~iev~~ylT~~~~~~ 786 (875)
..++++++|++|+.+++ +|.+.+.++++.. ..+.++..++...+ .
T Consensus 129 -------------------------------~~~~v~l~~g~r~~~~~-~~~~el~~l~~~~--~~~~~~~~~~~~~~-~ 173 (232)
T PRK08051 129 -------------------------------PNRPITLYWGGREEDHL-YDLDELEALALKH--PNLHFVPVVEQPEE-G 173 (232)
T ss_pred -------------------------------CCCcEEEEEEeccHHHh-hhhHHHHHHHHHC--CCcEEEEEeCCCCC-C
Confidence 14679999999999998 8988888887642 34666655543111 0
Q ss_pred ChhhHHHHHHHhhhcccCCcccccCCeeeeecCCCCHHHHHHHHHhhCCCCeEEEEEeCchHHHHHHHHHH-HhhccCCC
Q 002830 787 DARSTLITMVQALNHAKHGVDILSGTRVRTHFARPNWKEVFSRVATKHPNATIGVFYCGMPVLAKELKKLS-HELTHRTS 865 (875)
Q Consensus 787 d~rs~l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~~~v~~~~~~~~~~~~v~Vf~CGPp~l~~~lr~~~-~~~~~~~~ 865 (875)
. .| ..|+.. +.+++... +.....||+|||++|++.+++.+ .+. +.
T Consensus 174 ~----------------------~~-----~~g~v~-~~l~~~~~---~~~~~~vyicGp~~m~~~v~~~l~~~~---G~ 219 (232)
T PRK08051 174 W----------------------QG-----KTGTVL-TAVMQDFG---SLAEYDIYIAGRFEMAKIARELFCRER---GA 219 (232)
T ss_pred c----------------------cc-----ceeeeh-HHHHhhcc---CcccCEEEEECCHHHHHHHHHHHHHHc---CC
Confidence 0 01 012211 11222111 11234699999999999999999 774 44
Q ss_pred CeEEEEEecC
Q 002830 866 TRFEFHKEYF 875 (875)
Q Consensus 866 ~~f~fhkE~F 875 (875)
..-.+|.|.|
T Consensus 220 ~~~~i~~e~f 229 (232)
T PRK08051 220 REEHLFGDAF 229 (232)
T ss_pred CHHHeecccc
Confidence 5556788877
No 14
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=99.94 E-value=4.1e-28 Score=214.83 Aligned_cols=100 Identities=68% Similarity=1.103 Sum_probs=78.6
Q ss_pred hhhhccchHHHHhcccccccccCCCcchHHHHHHHHHHHhccCCCCCcCHHHHhhhhCCCCCHHHHHHHHHHHHhhCCCC
Q 002830 124 KLQRARSGAKRALNGLRFISKTAGASDAEELWRLVESRFESLAEDGLLAREDFGECIGMVDTKEFAVGIFDALARRRGQK 203 (875)
Q Consensus 124 ~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~w~~v~~~F~~l~~dG~L~~~eF~~~~g~~~~~~f~~~lF~al~~~~~~~ 203 (875)
||+||+|+|++||+|||||++|++.. ++|.+||+||++++.||.|+|++|++||||++|+|||.+||+||.++++++
T Consensus 1 rldRt~S~A~~ALkGLrFIskt~~~~---~~W~~VE~RFd~La~dG~L~rs~Fg~CIGM~dSkeFA~eLFdALaRrr~i~ 77 (100)
T PF08414_consen 1 RLDRTKSGAQRALKGLRFISKTTGGA---DGWKEVEKRFDKLAKDGLLPRSDFGECIGMKDSKEFAGELFDALARRRGIK 77 (100)
T ss_dssp -----HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH-BTTBEEGGGHHHHHT--S-HHHHHHHHHHHHHHTT--
T ss_pred CCCcchhHHHHHHhcccceecCCCCc---cCHHHHHHHHHHhCcCCcccHHHHHHhcCCcccHHHHHHHHHHHHHhcCCc
Confidence 58999999999999999999998874 589999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHhhcCCChhh
Q 002830 204 IGKITKEELREFWLQISDQSFDA 226 (875)
Q Consensus 204 ~g~I~f~Ef~~~~~~~~~~s~d~ 226 (875)
.+.|+++|+.+||.+++++++|+
T Consensus 78 ~~~I~k~eL~efW~qisD~sFDs 100 (100)
T PF08414_consen 78 GDSITKDELKEFWEQISDQSFDS 100 (100)
T ss_dssp SSEE-HHHHHHHHHHHH---HHH
T ss_pred cCCcCHHHHHHHHHHhhccCCCC
Confidence 99999999999999999999984
No 15
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=99.94 E-value=1.1e-25 Score=237.47 Aligned_cols=225 Identities=25% Similarity=0.387 Sum_probs=170.8
Q ss_pred EEEEEEeeCCCEEEEEEecCCC--cccCCCcEEEEECCCCCCcccccceeecCCCC-CeEEEEEEec--CCCcHHHHHHh
Q 002830 553 KDLKVSVLPGNVLSIVMSKPNG--FRYRSGQYIFLQCPTISSFEWHPFSITSAPGD-DHLSVHIRIV--GDWTHELKQVF 627 (875)
Q Consensus 553 ~i~~v~~l~~~vl~L~~~~p~~--~~ykpGQyvfL~~p~is~~e~HPFTItSaP~d-d~lsl~IR~~--G~wT~~L~~~~ 627 (875)
+|+++..+++++..++++.|.. +.|+||||+.|++|..+...+|||||+|+|.+ +.+.|+||.. |..|+.|.+.+
T Consensus 2 ~v~~~~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~~~~l~~~vk~~~~G~~s~~l~~~~ 81 (231)
T cd06215 2 RCVKIIQETPDVKTFRFAAPDGSLFAYKPGQFLTLELEIDGETVYRAYTLSSSPSRPDSLSITVKRVPGGLVSNWLHDNL 81 (231)
T ss_pred eEEEEEEcCCCeEEEEEECCCCCcCCcCCCCeEEEEEecCCCeEEEeeecccCCCCCCcEEEEEEEcCCCcchHHHHhcC
Confidence 5677888999999999998876 78999999999998666566899999999975 4699999998 88888876432
Q ss_pred hhcccccccCCccccccCCCCCCCCCEEEEECcCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhccccCCC
Q 002830 628 TEDKDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAAAQDYSNYDVLLLVGLGIGATPFISILRDLLNNTREELMDSNTD 707 (875)
Q Consensus 628 ~~~~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~~~~~~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~~~~~~ 707 (875)
.+| ..+.|.||||.+.......+.+||||||+||||+++++++++...
T Consensus 82 --------~~G--------------~~v~i~gP~G~f~~~~~~~~~~vlIagG~Giap~~~~l~~~~~~~---------- 129 (231)
T cd06215 82 --------KVG--------------DELWASGPAGEFTLIDHPADKLLLLSAGSGITPMMSMARWLLDTR---------- 129 (231)
T ss_pred --------CCC--------------CEEEEEcCcceeEeCCCCCCcEEEEecCcCcchHHHHHHHHHhcC----------
Confidence 234 789999999997643334789999999999999999999987541
Q ss_pred cccccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCchhhHHHHHHHHHhhcCCCcEEEEEEecccccCCC
Q 002830 708 SSRSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPGSFEWFKGVMDQVAEMDLKGQIELHNYLTSVYEEGD 787 (875)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~eWf~~~L~el~e~~~~~~iev~~ylT~~~~~~d 787 (875)
..++++++|++|+.+++ .+.+.++++++. ...++++.++|+..+.
T Consensus 130 ------------------------------~~~~v~l~~~~r~~~~~-~~~~~l~~l~~~--~~~~~~~~~~~~~~~~-- 174 (231)
T cd06215 130 ------------------------------PDADIVFIHSARSPADI-IFADELEELARR--HPNFRLHLILEQPAPG-- 174 (231)
T ss_pred ------------------------------CCCcEEEEEecCChhhh-hHHHHHHHHHHH--CCCeEEEEEEccCCCC--
Confidence 14679999999999987 477888888764 2358888888753210
Q ss_pred hhhHHHHHHHhhhcccCCcccccCCeeeeecCCCCHHHHHHHHHhhCCCCeEEEEEeCchHHHHHHHHHHHhhccCCCCe
Q 002830 788 ARSTLITMVQALNHAKHGVDILSGTRVRTHFARPNWKEVFSRVATKHPNATIGVFYCGMPVLAKELKKLSHELTHRTSTR 867 (875)
Q Consensus 788 ~rs~l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~~~v~~~~~~~~~~~~v~Vf~CGPp~l~~~lr~~~~~~~~~~~~~ 867 (875)
. .....||.+.. ++++..... ....||+|||+.|++.+++.+.+. +...
T Consensus 175 -~------------------------~~~~~g~~~~~-~l~~~~~~~--~~~~v~icGp~~m~~~~~~~l~~~---gv~~ 223 (231)
T cd06215 175 -A------------------------WGGYRGRLNAE-LLALLVPDL--KERTVFVCGPAGFMKAVKSLLAEL---GFPM 223 (231)
T ss_pred -c------------------------ccccCCcCCHH-HHHHhcCCc--cCCeEEEECCHHHHHHHHHHHHHc---CCCH
Confidence 0 00122565543 334332221 234799999999999999999874 4455
Q ss_pred EEEEEecC
Q 002830 868 FEFHKEYF 875 (875)
Q Consensus 868 f~fhkE~F 875 (875)
-.+|.|.|
T Consensus 224 ~~i~~e~f 231 (231)
T cd06215 224 SRFHQESF 231 (231)
T ss_pred HHeeeecC
Confidence 66788887
No 16
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=99.94 E-value=1.7e-25 Score=236.50 Aligned_cols=225 Identities=21% Similarity=0.370 Sum_probs=166.5
Q ss_pred eeEEEEEEeeCCCEEEEEEecCC--CcccCCCcEEEEECCCCCCcccccceeecCCCC-CeEEEEEEec--CCCcHHHHH
Q 002830 551 SAKDLKVSVLPGNVLSIVMSKPN--GFRYRSGQYIFLQCPTISSFEWHPFSITSAPGD-DHLSVHIRIV--GDWTHELKQ 625 (875)
Q Consensus 551 ~~~i~~v~~l~~~vl~L~~~~p~--~~~ykpGQyvfL~~p~is~~e~HPFTItSaP~d-d~lsl~IR~~--G~wT~~L~~ 625 (875)
+++|.+++.+++++.++++..+. .+.|+||||+.|.+|... ++|||||+|.|.+ +++.|+||.. |.+|..|.+
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~~~~~~~l~l~vk~~~~G~~s~~l~~ 79 (232)
T cd06212 2 VGTVVAVEALTHDIRRLRLRLEEPEPIKFFAGQYVDITVPGTE--ETRSFSMANTPADPGRLEFIIKKYPGGLFSSFLDD 79 (232)
T ss_pred ceEEEEEeecCCCeEEEEEEcCCCCcCCcCCCCeEEEEcCCCC--cccccccCCCCCCCCEEEEEEEECCCCchhhHHhh
Confidence 46788899999999999997544 578999999999998643 7899999999975 8999999997 667887765
Q ss_pred HhhhcccccccCCccccccCCCCCCCCCEEEEECcCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhccccC
Q 002830 626 VFTEDKDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAAAQDYSNYDVLLLVGLGIGATPFISILRDLLNNTREELMDSN 705 (875)
Q Consensus 626 ~~~~~~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~~~~~~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~~~~ 705 (875)
.+ .+| .++.|.||||.+......++++||||||+||||++|+++++..+.
T Consensus 80 ~l--------~~G--------------~~v~i~gP~G~~~~~~~~~~~~l~iagG~Giap~~~~l~~~~~~~-------- 129 (232)
T cd06212 80 GL--------AVG--------------DPVTVTGPYGTCTLRESRDRPIVLIGGGSGMAPLLSLLRDMAASG-------- 129 (232)
T ss_pred cC--------CCC--------------CEEEEEcCcccceecCCCCCcEEEEecCcchhHHHHHHHHHHhcC--------
Confidence 32 233 789999999998754445789999999999999999999987651
Q ss_pred CCcccccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCchhhHHHHHHHHHhhcCCCcEEEEEEecccccC
Q 002830 706 TDSSRSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPGSFEWFKGVMDQVAEMDLKGQIELHNYLTSVYEE 785 (875)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~eWf~~~L~el~e~~~~~~iev~~ylT~~~~~ 785 (875)
..++++++|++|+.+++ ++.+.++++++. ...++++..+++...+
T Consensus 130 --------------------------------~~~~v~l~~~~r~~~~~-~~~~~l~~l~~~--~~~~~~~~~~s~~~~~ 174 (232)
T cd06212 130 --------------------------------SDRPVRFFYGARTARDL-FYLEEIAALGEK--IPDFTFIPALSESPDD 174 (232)
T ss_pred --------------------------------CCCcEEEEEeccchHHh-ccHHHHHHHHHh--CCCEEEEEEECCCCCC
Confidence 13679999999999988 577888888764 2347666666643211
Q ss_pred CChhhHHHHHHHhhhcccCCcccccCCeeeeecCCCCHHHHHHHHHhhCCCCeEEEEEeCchHHHHHHHHHHHhhccCCC
Q 002830 786 GDARSTLITMVQALNHAKHGVDILSGTRVRTHFARPNWKEVFSRVATKHPNATIGVFYCGMPVLAKELKKLSHELTHRTS 865 (875)
Q Consensus 786 ~d~rs~l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~~~v~~~~~~~~~~~~v~Vf~CGPp~l~~~lr~~~~~~~~~~~ 865 (875)
+. ..| ..|+ +.+.+.+..... ....||+|||+.|++.+.+.+.+. |.
T Consensus 175 -~~--------------------~~~-----~~g~--~~~~~~~~~~~~--~~~~v~~CGp~~~~~~v~~~l~~~---G~ 221 (232)
T cd06212 175 -EG--------------------WSG-----ETGL--VTEVVQRNEATL--AGCDVYLCGPPPMIDAALPVLEMS---GV 221 (232)
T ss_pred -CC--------------------CcC-----Cccc--HHHHHHhhccCc--cCCEEEEECCHHHHHHHHHHHHHc---CC
Confidence 00 000 0122 223333322111 234699999999999999999884 44
Q ss_pred CeEEEEEecC
Q 002830 866 TRFEFHKEYF 875 (875)
Q Consensus 866 ~~f~fhkE~F 875 (875)
..-.+|.|.|
T Consensus 222 ~~~~i~~e~f 231 (232)
T cd06212 222 PPDQIFYDKF 231 (232)
T ss_pred CHHHeeeccc
Confidence 5667888887
No 17
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=99.94 E-value=1.9e-25 Score=236.70 Aligned_cols=224 Identities=18% Similarity=0.304 Sum_probs=166.1
Q ss_pred eeEEEEEEeeCCCEEEEEEecCCC------cccCCCcEEEEECCCCCCcccccceeecCCC-CCeEEEEEEec--CCCcH
Q 002830 551 SAKDLKVSVLPGNVLSIVMSKPNG------FRYRSGQYIFLQCPTISSFEWHPFSITSAPG-DDHLSVHIRIV--GDWTH 621 (875)
Q Consensus 551 ~~~i~~v~~l~~~vl~L~~~~p~~------~~ykpGQyvfL~~p~is~~e~HPFTItSaP~-dd~lsl~IR~~--G~wT~ 621 (875)
.++|++++.+++++..++++.|.+ +.|+||||+.|.+|.. .++|||||+|.|. ++.+.|+||.. |.+|.
T Consensus 3 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~~~--~~~R~ySi~s~~~~~~~l~~~i~~~~~G~~s~ 80 (236)
T cd06210 3 EAEIVAVDRVSSNVVRLRLQPDDAEGAGIAAEFVPGQFVEIEIPGT--DTRRSYSLANTPNWDGRLEFLIRLLPGGAFST 80 (236)
T ss_pred eEEEEEEeecCCceEEEEEEeCCcccccccCCcCCCCEEEEEcCCC--ccceecccCCCCCCCCEEEEEEEEcCCCccch
Confidence 567888999999999999998764 7899999999999853 3789999999997 67899999987 77888
Q ss_pred HHHHHhhhcccccccCCccccccCCCCCCCCCEEEEECcCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhc
Q 002830 622 ELKQVFTEDKDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAAAQDYSNYDVLLLVGLGIGATPFISILRDLLNNTREEL 701 (875)
Q Consensus 622 ~L~~~~~~~~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~~~~~~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~ 701 (875)
.|.+.+ .+| .++.|.||||.+..+-.++++++|||||+||||++|+++++..+.
T Consensus 81 ~l~~~~--------~~G--------------d~v~i~gP~G~f~l~~~~~~~~vliagGtGiaP~~~~l~~~~~~~---- 134 (236)
T cd06210 81 YLETRA--------KVG--------------QRLNLRGPLGAFGLRENGLRPRWFVAGGTGLAPLLSMLRRMAEWG---- 134 (236)
T ss_pred hhhhCc--------CCC--------------CEEEEecCcceeeecCCCCccEEEEccCcchhHHHHHHHHHHhcC----
Confidence 887632 344 789999999997643345678999999999999999999987541
Q ss_pred cccCCCcccccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCchhhHHHHHHHHHhhcCCCcEEEEEEecc
Q 002830 702 MDSNTDSSRSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPGSFEWFKGVMDQVAEMDLKGQIELHNYLTS 781 (875)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~eWf~~~L~el~e~~~~~~iev~~ylT~ 781 (875)
..++++|+|.+|+.+++ ++.+.+.++++.. ..++++..+++
T Consensus 135 ------------------------------------~~~~v~l~~~~r~~~~~-~~~~~l~~l~~~~--~~~~~~~~~s~ 175 (236)
T cd06210 135 ------------------------------------EPQEARLFFGVNTEAEL-FYLDELKRLADSL--PNLTVRICVWR 175 (236)
T ss_pred ------------------------------------CCceEEEEEecCCHHHh-hhHHHHHHHHHhC--CCeEEEEEEcC
Confidence 13679999999999997 6888888887642 35787777764
Q ss_pred cccCCChhhHHHHHHHhhhcccCCcccccCCeeeeecCCCCHHHHHHHHHhhCCCCeEEEEEeCchHHHHHHHHHHHhhc
Q 002830 782 VYEEGDARSTLITMVQALNHAKHGVDILSGTRVRTHFARPNWKEVFSRVATKHPNATIGVFYCGMPVLAKELKKLSHELT 861 (875)
Q Consensus 782 ~~~~~d~rs~l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~~~v~~~~~~~~~~~~v~Vf~CGPp~l~~~lr~~~~~~~ 861 (875)
.... . .| ..|+ ..+.+.+..... .....||+|||+.|++.+++.+.+.
T Consensus 176 ~~~~--~---------------------~~-----~~g~--~~~~l~~~l~~~-~~~~~vyicGp~~m~~~~~~~l~~~- 223 (236)
T cd06210 176 PGGE--W---------------------EG-----YRGT--VVDALREDLASS-DAKPDIYLCGPPGMVDAAFAAAREA- 223 (236)
T ss_pred CCCC--c---------------------CC-----ccCc--HHHHHHHhhccc-CCCcEEEEeCCHHHHHHHHHHHHHc-
Confidence 2110 0 00 0112 122233221111 1234699999999999999999874
Q ss_pred cCCCCeEEEEEecC
Q 002830 862 HRTSTRFEFHKEYF 875 (875)
Q Consensus 862 ~~~~~~f~fhkE~F 875 (875)
+..+-.+|.|.|
T Consensus 224 --G~~~~~i~~E~f 235 (236)
T cd06210 224 --GVPDEQVYLEKF 235 (236)
T ss_pred --CCCHHHeeeccc
Confidence 444446888877
No 18
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=99.94 E-value=1.4e-25 Score=237.06 Aligned_cols=226 Identities=20% Similarity=0.278 Sum_probs=167.3
Q ss_pred EEEEEEeeCCCEEEEEEecCCC--cccCCCcEEEEECCCCCCcccccceeecCCCCCeEEEEEEec--CCCcHHHHHHhh
Q 002830 553 KDLKVSVLPGNVLSIVMSKPNG--FRYRSGQYIFLQCPTISSFEWHPFSITSAPGDDHLSVHIRIV--GDWTHELKQVFT 628 (875)
Q Consensus 553 ~i~~v~~l~~~vl~L~~~~p~~--~~ykpGQyvfL~~p~is~~e~HPFTItSaP~dd~lsl~IR~~--G~wT~~L~~~~~ 628 (875)
+|++++.+++++.++++..|.. +.|+||||+.|+++..+...+|||||+|.|.+++++|+||.. |..|+.|.+.+
T Consensus 2 ~v~~i~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~~l~~~v~~~~~G~~s~~l~~~~- 80 (231)
T cd06191 2 RVAEVRSETPDAVTIVFAVPGPLQYGFRPGQHVTLKLDFDGEELRRCYSLCSSPAPDEISITVKRVPGGRVSNYLREHI- 80 (231)
T ss_pred EEEEEEecCCCcEEEEEeCCCCCCCCCCCCCeEEEEEecCCeEEeeeeeccCCCCCCeEEEEEEECCCCccchHHHhcC-
Confidence 5677888999999999987654 689999999999975555678999999998878899999998 77898887532
Q ss_pred hcccccccCCccccccCCCCCCCCCEEEEECcCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhccccCCCc
Q 002830 629 EDKDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAAAQDYSNYDVLLLVGLGIGATPFISILRDLLNNTREELMDSNTDS 708 (875)
Q Consensus 629 ~~~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~~~~~~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~~~~~~~ 708 (875)
.+| .++.|+||||.+..+....+++||||||+||||++|++++++...
T Consensus 81 -------~~G--------------d~v~i~gP~G~f~l~~~~~~~~lliagG~Gitp~~s~~~~~~~~~----------- 128 (231)
T cd06191 81 -------QPG--------------MTVEVMGPQGHFVYQPQPPGRYLLVAAGSGITPLMAMIRATLQTA----------- 128 (231)
T ss_pred -------CCC--------------CEEEEeCCccceEeCCCCCCcEEEEecCccHhHHHHHHHHHHhcC-----------
Confidence 234 789999999997544345678999999999999999999987541
Q ss_pred ccccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCchhhHHHHHHHHHhhcCCCcEEEEEEecccccCCCh
Q 002830 709 SRSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPGSFEWFKGVMDQVAEMDLKGQIELHNYLTSVYEEGDA 788 (875)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~eWf~~~L~el~e~~~~~~iev~~ylT~~~~~~d~ 788 (875)
..++++++|++|+.+++ .|.+.++++++. ...++++.++|+.....+.
T Consensus 129 -----------------------------~~~~v~l~~~~r~~~~~-~~~~el~~l~~~--~~~~~~~~~~s~~~~~~~~ 176 (231)
T cd06191 129 -----------------------------PESDFTLIHSARTPADM-IFAQELRELADK--PQRLRLLCIFTRETLDSDL 176 (231)
T ss_pred -----------------------------CCCCEEEEEecCCHHHH-hHHHHHHHHHHh--CCCeEEEEEECCCCCCccc
Confidence 14689999999999998 588888888754 3468888877753211000
Q ss_pred hhHHHHHHHhhhcccCCcccccCCeeeeecCCCCHHHHHHHHHhhCCCCeEEEEEeCchHHHHHHHHHHHhhccCCCCeE
Q 002830 789 RSTLITMVQALNHAKHGVDILSGTRVRTHFARPNWKEVFSRVATKHPNATIGVFYCGMPVLAKELKKLSHELTHRTSTRF 868 (875)
Q Consensus 789 rs~l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~~~v~~~~~~~~~~~~v~Vf~CGPp~l~~~lr~~~~~~~~~~~~~f 868 (875)
.+. .++- -.++.+.+... .....||+|||++|++.+++.+.+. +...-
T Consensus 177 ---------------------~~~-----~~~~-~~~l~~~~~~~--~~~~~vyicGp~~mv~~~~~~l~~~---G~~~~ 224 (231)
T cd06191 177 ---------------------LHG-----RIDG-EQSLGAALIPD--RLEREAFICGPAGMMDAVETALKEL---GMPPE 224 (231)
T ss_pred ---------------------cCC-----cccc-cHHHHHHhCcc--ccCCeEEEECCHHHHHHHHHHHHHc---CCCHH
Confidence 000 0110 12232222111 1234799999999999999999874 45556
Q ss_pred EEEEecC
Q 002830 869 EFHKEYF 875 (875)
Q Consensus 869 ~fhkE~F 875 (875)
.+|.|.|
T Consensus 225 ~i~~E~f 231 (231)
T cd06191 225 RIHTERF 231 (231)
T ss_pred HeeeccC
Confidence 7888887
No 19
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=99.94 E-value=2.1e-25 Score=235.24 Aligned_cols=221 Identities=21% Similarity=0.318 Sum_probs=167.8
Q ss_pred eeEEEEEEeeCCCEEEEEEecCC--CcccCCCcEEEEECCCCCCcccccceeecCCCCCeEEEEEEec--CCCcHHHHHH
Q 002830 551 SAKDLKVSVLPGNVLSIVMSKPN--GFRYRSGQYIFLQCPTISSFEWHPFSITSAPGDDHLSVHIRIV--GDWTHELKQV 626 (875)
Q Consensus 551 ~~~i~~v~~l~~~vl~L~~~~p~--~~~ykpGQyvfL~~p~is~~e~HPFTItSaP~dd~lsl~IR~~--G~wT~~L~~~ 626 (875)
.++|+++..+++++.+|+++.|. .+.|+||||+.|++|... ++|||||+|.|.++.+.|+||.. |..|+.|.+.
T Consensus 3 ~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ysi~s~~~~~~i~~~i~~~~~G~~s~~l~~~ 80 (228)
T cd06209 3 EATVTEVERLSDSTIGLTLELDEAGALAFLPGQYVNLQVPGTD--ETRSYSFSSAPGDPRLEFLIRLLPGGAMSSYLRDR 80 (228)
T ss_pred eEEEEEEEEcCCCeEEEEEEcCCCCcCccCCCCEEEEEeCCCC--cccccccccCCCCCeEEEEEEEcCCCcchhhHHhc
Confidence 57788999999999999999887 678999999999998643 68999999999888999999986 7788888763
Q ss_pred hhhcccccccCCccccccCCCCCCCCCEEEEECcCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhccccCC
Q 002830 627 FTEDKDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAAAQDYSNYDVLLLVGLGIGATPFISILRDLLNNTREELMDSNT 706 (875)
Q Consensus 627 ~~~~~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~~~~~~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~~~~~ 706 (875)
+ .+| ..+.|.||||.+..+ ...++++|||||+||||++|++++++.+.
T Consensus 81 l--------~~G--------------~~v~v~gP~G~~~~~-~~~~~~vlia~GtGIaP~~~ll~~~~~~~--------- 128 (228)
T cd06209 81 A--------QPG--------------DRLTLTGPLGSFYLR-EVKRPLLMLAGGTGLAPFLSMLDVLAEDG--------- 128 (228)
T ss_pred c--------CCC--------------CEEEEECCcccceec-CCCCeEEEEEcccCHhHHHHHHHHHHhcC---------
Confidence 2 234 789999999998643 33478999999999999999999987651
Q ss_pred CcccccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCchhhHHHHHHHHHhhcCCCcEEEEEEecccccCC
Q 002830 707 DSSRSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPGSFEWFKGVMDQVAEMDLKGQIELHNYLTSVYEEG 786 (875)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~eWf~~~L~el~e~~~~~~iev~~ylT~~~~~~ 786 (875)
..++++|+|.+|+.+++ .+.+.++++++.. ..++++.++|+....
T Consensus 129 -------------------------------~~~~v~l~~~~r~~~~~-~~~~~l~~l~~~~--~~~~~~~~~s~~~~~- 173 (228)
T cd06209 129 -------------------------------SAHPVHLVYGVTRDADL-VELDRLEALAERL--PGFSFRTVVADPDSW- 173 (228)
T ss_pred -------------------------------CCCcEEEEEecCCHHHh-ccHHHHHHHHHhC--CCeEEEEEEcCCCcc-
Confidence 14689999999999887 5777788876542 358888887753210
Q ss_pred ChhhHHHHHHHhhhcccCCcccccCCeeeeecCCCCHHHHHHHHHhhCCCCeEEEEEeCchHHHHHHHHHHHhhccCCCC
Q 002830 787 DARSTLITMVQALNHAKHGVDILSGTRVRTHFARPNWKEVFSRVATKHPNATIGVFYCGMPVLAKELKKLSHELTHRTST 866 (875)
Q Consensus 787 d~rs~l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~~~v~~~~~~~~~~~~v~Vf~CGPp~l~~~lr~~~~~~~~~~~~ 866 (875)
+ | ..|+ +.+.+.+... +..+..||+|||+.|++.+++.+.+. |..
T Consensus 174 ~-----------------------~-----~~g~--v~~~~~~~~~--~~~~~~v~icGp~~m~~~~~~~l~~~---G~~ 218 (228)
T cd06209 174 H-----------------------P-----RKGY--VTDHLEAEDL--NDGDVDVYLCGPPPMVDAVRSWLDEQ---GIE 218 (228)
T ss_pred C-----------------------C-----CcCC--ccHHHHHhhc--cCCCcEEEEeCCHHHHHHHHHHHHHc---CCC
Confidence 0 0 0011 2222222111 12245799999999999999999873 555
Q ss_pred eEEEEEecC
Q 002830 867 RFEFHKEYF 875 (875)
Q Consensus 867 ~f~fhkE~F 875 (875)
.-.+|.|.|
T Consensus 219 ~~~i~~E~F 227 (228)
T cd06209 219 PANFYYEKF 227 (228)
T ss_pred HHHEeeecc
Confidence 667888887
No 20
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.94 E-value=1.7e-25 Score=235.81 Aligned_cols=222 Identities=21% Similarity=0.312 Sum_probs=166.8
Q ss_pred eeEEEEEEeeCCCEEEEEEecCCCcccCCCcEEEEECCCCCCcccccceeecCCCC-CeEEEEEEec--CCCcHHHHHHh
Q 002830 551 SAKDLKVSVLPGNVLSIVMSKPNGFRYRSGQYIFLQCPTISSFEWHPFSITSAPGD-DHLSVHIRIV--GDWTHELKQVF 627 (875)
Q Consensus 551 ~~~i~~v~~l~~~vl~L~~~~p~~~~ykpGQyvfL~~p~is~~e~HPFTItSaP~d-d~lsl~IR~~--G~wT~~L~~~~ 627 (875)
.++|++++.+++++.+++++.|..+.|+||||+.|.+|... .+|||||+|+|.+ +.++|+||.. |.+|+.|.+.+
T Consensus 2 ~~~v~~~~~~t~~~~~~~l~~~~~~~~~pGQ~~~l~~~~~~--~~r~ysi~s~~~~~~~l~~~vk~~~~G~~s~~l~~~l 79 (227)
T cd06213 2 RGTIVAQERLTHDIVRLTVQLDRPIAYKAGQYAELTLPGLP--AARSYSFANAPQGDGQLSFHIRKVPGGAFSGWLFGAD 79 (227)
T ss_pred eEEEEEEeecCCCEEEEEEecCCCCCcCCCCEEEEEeCCCC--cccccccCCCCCCCCEEEEEEEECCCCcchHHHHhcC
Confidence 35678888999999999999887788999999999998643 6899999999974 7899999987 88999886643
Q ss_pred hhcccccccCCccccccCCCCCCCCCEEEEECcCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhccccCCC
Q 002830 628 TEDKDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAAAQDYSNYDVLLLVGLGIGATPFISILRDLLNNTREELMDSNTD 707 (875)
Q Consensus 628 ~~~~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~~~~~~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~~~~~~ 707 (875)
.+| ..|.|.||||.+..+ ...+++|||||||||||+++++++++++.
T Consensus 80 --------~~G--------------~~v~i~gP~G~~~~~-~~~~~~lliagG~GiaP~~~~~~~~~~~~---------- 126 (227)
T cd06213 80 --------RTG--------------ERLTVRGPFGDFWLR-PGDAPILCIAGGSGLAPILAILEQARAAG---------- 126 (227)
T ss_pred --------CCC--------------CEEEEeCCCcceEeC-CCCCcEEEEecccchhHHHHHHHHHHhcC----------
Confidence 234 689999999998653 34578999999999999999999987541
Q ss_pred cccccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCchhhHHHHHHHHHhhcCCCcEEEEEEecccccCCC
Q 002830 708 SSRSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPGSFEWFKGVMDQVAEMDLKGQIELHNYLTSVYEEGD 787 (875)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~eWf~~~L~el~e~~~~~~iev~~ylT~~~~~~d 787 (875)
..++++++|.+|+.+++ ++.+.+.++++.. ...+.++.++++..+..+
T Consensus 127 ------------------------------~~~~i~l~~~~r~~~~~-~~~~~l~~l~~~~-~~~~~~~~~~s~~~~~~~ 174 (227)
T cd06213 127 ------------------------------TKRDVTLLFGARTQRDL-YALDEIAAIAARW-RGRFRFIPVLSEEPADSS 174 (227)
T ss_pred ------------------------------CCCcEEEEEeeCCHHHh-ccHHHHHHHHHhc-cCCeEEEEEecCCCCCCC
Confidence 14679999999999987 6788888877532 245777776664311100
Q ss_pred hhhHHHHHHHhhhcccCCcccccCCeeeeecCCC-CHHHHHHHHHhhCCCCeEEEEEeCchHHHHHHHHHHHhhccCCCC
Q 002830 788 ARSTLITMVQALNHAKHGVDILSGTRVRTHFARP-NWKEVFSRVATKHPNATIGVFYCGMPVLAKELKKLSHELTHRTST 866 (875)
Q Consensus 788 ~rs~l~~m~q~l~~~k~g~divsg~rv~~~~gRP-d~~~v~~~~~~~~~~~~v~Vf~CGPp~l~~~lr~~~~~~~~~~~~ 866 (875)
. .|++ ...+.+.+.. .....||+|||+.|++.+++.+.+. +..
T Consensus 175 ~-----------------------------~g~~g~v~~~l~~~~----~~~~~v~~CGp~~~~~~~~~~l~~~---G~~ 218 (227)
T cd06213 175 W-----------------------------KGARGLVTEHIAEVL----LAATEAYLCGPPAMIDAAIAVLRAL---GIA 218 (227)
T ss_pred c-----------------------------cCCcccHHHHHHhhc----cCCCEEEEECCHHHHHHHHHHHHHc---CCC
Confidence 0 0111 2222333322 1234799999999999999999874 445
Q ss_pred eEEEEEecC
Q 002830 867 RFEFHKEYF 875 (875)
Q Consensus 867 ~f~fhkE~F 875 (875)
+-.+|.|.|
T Consensus 219 ~~~i~~e~f 227 (227)
T cd06213 219 REHIHADRF 227 (227)
T ss_pred HHHEeccCC
Confidence 556788877
No 21
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=99.94 E-value=2e-25 Score=234.36 Aligned_cols=216 Identities=21% Similarity=0.303 Sum_probs=162.7
Q ss_pred EEEEeeCCCEEEEEEecCCCcccCCCcEEEEECCCCCCcccccceeecCCCC-CeEEEEEEec--CCCcHHHHHHhhhcc
Q 002830 555 LKVSVLPGNVLSIVMSKPNGFRYRSGQYIFLQCPTISSFEWHPFSITSAPGD-DHLSVHIRIV--GDWTHELKQVFTEDK 631 (875)
Q Consensus 555 ~~v~~l~~~vl~L~~~~p~~~~ykpGQyvfL~~p~is~~e~HPFTItSaP~d-d~lsl~IR~~--G~wT~~L~~~~~~~~ 631 (875)
.+++.+++++++++++.|..+.|+||||++|++|.. ..|||||+|.|.+ +.+.|+||.. |.+|+.|.+.+
T Consensus 2 ~~~~~~~~~~~~i~l~~~~~~~~~pGQ~v~l~~~~~---~~r~ySi~s~~~~~~~~~~~i~~~~~G~~s~~l~~~~---- 74 (222)
T cd06194 2 VSLQRLSPDVLRVRLEPDRPLPYLPGQYVNLRRAGG---LARSYSPTSLPDGDNELEFHIRRKPNGAFSGWLGEEA---- 74 (222)
T ss_pred ceeeecCCCEEEEEEecCCCCCcCCCCEEEEEcCCC---CceeeecCCCCCCCCEEEEEEEeccCCccchHHHhcc----
Confidence 456788999999999988889999999999999863 5699999999976 7899999986 66888887642
Q ss_pred cccccCCccccccCCCCCCCCCEEEEECcCCCCCCCC-CCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhccccCCCccc
Q 002830 632 DSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAAAQDY-SNYDVLLLVGLGIGATPFISILRDLLNNTREELMDSNTDSSR 710 (875)
Q Consensus 632 ~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~~~~~-~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~~~~~~~~~ 710 (875)
.+| .++.|.||||.+.... ..++++||||||+||||++|++++++...
T Consensus 75 ----~~G--------------~~v~i~gP~G~~~~~~~~~~~~~v~iagG~Giap~~~~l~~~~~~~------------- 123 (222)
T cd06194 75 ----RPG--------------HALRLQGPFGQAFYRPEYGEGPLLLVGAGTGLAPLWGIARAALRQG------------- 123 (222)
T ss_pred ----CCC--------------CEEEEecCcCCeeccCCCCCCCEEEEecCcchhhHHHHHHHHHhcC-------------
Confidence 233 7899999999986533 45688999999999999999999987541
Q ss_pred ccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCchhhHHHHHHHHHhhcCCCcEEEEEEecccccCCChhh
Q 002830 711 SASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPGSFEWFKGVMDQVAEMDLKGQIELHNYLTSVYEEGDARS 790 (875)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~eWf~~~L~el~e~~~~~~iev~~ylT~~~~~~d~rs 790 (875)
..++++++|++|+.+++ +|.++++++++. ...++++..+++.... ..
T Consensus 124 ---------------------------~~~~v~l~~~~r~~~~~-~~~~el~~l~~~--~~~~~~~~~~~~~~~~-~~-- 170 (222)
T cd06194 124 ---------------------------HQGEIRLVHGARDPDDL-YLHPALLWLARE--HPNFRYIPCVSEGSQG-DP-- 170 (222)
T ss_pred ---------------------------CCccEEEEEecCChhhc-cCHHHHHHHHHH--CCCeEEEEEEccCCCC-Cc--
Confidence 14689999999999997 788888888753 2347777766652111 00
Q ss_pred HHHHHHHhhhcccCCcccccCCeeeeecCCCCHHHHHHHHHhhCCCCeEEEEEeCchHHHHHHHHHHHhhccCCCCeEEE
Q 002830 791 TLITMVQALNHAKHGVDILSGTRVRTHFARPNWKEVFSRVATKHPNATIGVFYCGMPVLAKELKKLSHELTHRTSTRFEF 870 (875)
Q Consensus 791 ~l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~~~v~~~~~~~~~~~~v~Vf~CGPp~l~~~lr~~~~~~~~~~~~~f~f 870 (875)
+.+..++...+.. ......||+|||++|++.+++.+.+. |...-.+
T Consensus 171 -----------------------------~~~~~~~~~~~~~--~~~~~~vyicGp~~m~~~~~~~L~~~---Gv~~~~i 216 (222)
T cd06194 171 -----------------------------RVRAGRIAAHLPP--LTRDDVVYLCGAPSMVNAVRRRAFLA---GAPMKRI 216 (222)
T ss_pred -----------------------------ccccchhhhhhcc--ccCCCEEEEeCCHHHHHHHHHHHHHc---CCCHHHe
Confidence 0001112222211 12235799999999999999999874 5556678
Q ss_pred EEecC
Q 002830 871 HKEYF 875 (875)
Q Consensus 871 hkE~F 875 (875)
|.|.|
T Consensus 217 ~~e~f 221 (222)
T cd06194 217 YADPF 221 (222)
T ss_pred eeccc
Confidence 88876
No 22
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=99.94 E-value=2.8e-25 Score=235.01 Aligned_cols=228 Identities=20% Similarity=0.275 Sum_probs=169.7
Q ss_pred eeeEEEEEEeeCCCEEEEEEecCCC--cccCCCcEEEEECCCC-CCcccccceeecCCCC-CeEEEEEEec--CCCcHHH
Q 002830 550 FSAKDLKVSVLPGNVLSIVMSKPNG--FRYRSGQYIFLQCPTI-SSFEWHPFSITSAPGD-DHLSVHIRIV--GDWTHEL 623 (875)
Q Consensus 550 ~~~~i~~v~~l~~~vl~L~~~~p~~--~~ykpGQyvfL~~p~i-s~~e~HPFTItSaP~d-d~lsl~IR~~--G~wT~~L 623 (875)
..++|++++.+++++.+++++.|.. ..|+||||++|.+|.. +...+|||||+|.|.+ +.+.|+||.. |..|..|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~~~~l~l~v~~~~~G~~s~~l 81 (235)
T cd06217 2 RVLRVTEIIQETPTVKTFRLAVPDGVPPPFLAGQHVDLRLTAIDGYTAQRSYSIASSPTQRGRVELTVKRVPGGEVSPYL 81 (235)
T ss_pred ceEEEEEEEecCCCeEEEEEECCCCCcCCcCCcCeEEEEEecCCCceeeeeecccCCCCCCCeEEEEEEEcCCCcchHHH
Confidence 4678889999999999999998876 7899999999999843 3346799999999865 5899999988 5578777
Q ss_pred HHHhhhcccccccCCccccccCCCCCCCCCEEEEECcCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhccc
Q 002830 624 KQVFTEDKDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAAAQDYSNYDVLLLVGLGIGATPFISILRDLLNNTREELMD 703 (875)
Q Consensus 624 ~~~~~~~~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~~~~~~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~~ 703 (875)
.+.+ .+| ..+.|.||||.+..+....+++||||||+||||+++++++++++.
T Consensus 82 ~~~l--------~~G--------------d~v~i~gP~G~~~~~~~~~~~~vliagG~Giap~~~~~~~~~~~~------ 133 (235)
T cd06217 82 HDEV--------KVG--------------DLLEVRGPIGTFTWNPLHGDPVVLLAGGSGIVPLMSMIRYRRDLG------ 133 (235)
T ss_pred HhcC--------CCC--------------CEEEEeCCceeeEeCCCCCceEEEEecCcCccHHHHHHHHHHhcC------
Confidence 6532 233 789999999997543334689999999999999999999987651
Q ss_pred cCCCcccccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCchhhHHHHHHHHHhhcCCCcEEEEEEecccc
Q 002830 704 SNTDSSRSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPGSFEWFKGVMDQVAEMDLKGQIELHNYLTSVY 783 (875)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~eWf~~~L~el~e~~~~~~iev~~ylT~~~ 783 (875)
..++++++|++|+.+++ ++.+.|.++++. ...+.++.++|+..
T Consensus 134 ----------------------------------~~~~i~l~~~~r~~~~~-~~~~el~~~~~~--~~~~~~~~~~s~~~ 176 (235)
T cd06217 134 ----------------------------------WPVPFRLLYSARTAEDV-IFRDELEQLARR--HPNLHVTEALTRAA 176 (235)
T ss_pred ----------------------------------CCceEEEEEecCCHHHh-hHHHHHHHHHHH--CCCeEEEEEeCCCC
Confidence 14679999999999987 688888887764 23477777777531
Q ss_pred cCCChhhHHHHHHHhhhcccCCcccccCCeeeeecCCCCHHHHHHHHHhhCCCCeEEEEEeCchHHHHHHHHHHHhhccC
Q 002830 784 EEGDARSTLITMVQALNHAKHGVDILSGTRVRTHFARPNWKEVFSRVATKHPNATIGVFYCGMPVLAKELKKLSHELTHR 863 (875)
Q Consensus 784 ~~~d~rs~l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~~~v~~~~~~~~~~~~v~Vf~CGPp~l~~~lr~~~~~~~~~ 863 (875)
. +. .. .+.||.+-. ++++.... .....||+|||++|++++++.+.+.
T Consensus 177 ~--~~--------------------~~-----~~~g~~~~~-~l~~~~~~--~~~~~v~icGp~~m~~~v~~~l~~~--- 223 (235)
T cd06217 177 P--AD--------------------WL-----GPAGRITAD-LIAELVPP--LAGRRVYVCGPPAFVEAATRLLLEL--- 223 (235)
T ss_pred C--CC--------------------cC-----CcCcEeCHH-HHHhhCCC--ccCCEEEEECCHHHHHHHHHHHHHc---
Confidence 1 10 00 122455432 23332111 2235799999999999999999874
Q ss_pred CCCeEEEEEecC
Q 002830 864 TSTRFEFHKEYF 875 (875)
Q Consensus 864 ~~~~f~fhkE~F 875 (875)
+...-.+|.|.|
T Consensus 224 Gv~~~~i~~E~f 235 (235)
T cd06217 224 GVPRDRIRTEAF 235 (235)
T ss_pred CCCHHHEeeccC
Confidence 445556788887
No 23
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=99.94 E-value=2.5e-25 Score=235.13 Aligned_cols=227 Identities=17% Similarity=0.245 Sum_probs=165.0
Q ss_pred EEEEeeCCCEEEEEEecCCCcccCCCcEEEEECCCCCCcccccceeecCCCC-CeEEEEEEec--CCCcHHHHHHhhhcc
Q 002830 555 LKVSVLPGNVLSIVMSKPNGFRYRSGQYIFLQCPTISSFEWHPFSITSAPGD-DHLSVHIRIV--GDWTHELKQVFTEDK 631 (875)
Q Consensus 555 ~~v~~l~~~vl~L~~~~p~~~~ykpGQyvfL~~p~is~~e~HPFTItSaP~d-d~lsl~IR~~--G~wT~~L~~~~~~~~ 631 (875)
++++.+++++..++++.|..+.|+||||++|.+|..+ ..|||||+|.|.+ ++++|+||.. |.+|+.|.+.+
T Consensus 2 ~~~~~~t~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~~~~~~~~~~~vk~~~~G~~s~~l~~~~---- 75 (232)
T cd06190 2 VDVRELTHDVAEFRFALDGPADFLPGQYALLALPGVE--GARAYSMANLANASGEWEFIIKRKPGGAASNALFDNL---- 75 (232)
T ss_pred CceEEcCCCEEEEEEEcCCccccCCCCEEEEECCCCC--cccCccCCcCCCCCCEEEEEEEEcCCCcchHHHhhcC----
Confidence 3567789999999999888889999999999998754 6799999999875 7899999987 77898887632
Q ss_pred cccccCCccccccCCCCCCCCCEEEEECcCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhccccCCCcccc
Q 002830 632 DSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAAAQDYSNYDVLLLVGLGIGATPFISILRDLLNNTREELMDSNTDSSRS 711 (875)
Q Consensus 632 ~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~~~~~~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~~~~~~~~~~ 711 (875)
.+| ..+.|.||||.+.......+++||||||+||||++|+++++..+..
T Consensus 76 ----~~g--------------~~v~v~gP~G~~~~~~~~~~~illIagG~GiaP~~~~l~~~~~~~~------------- 124 (232)
T cd06190 76 ----EPG--------------DELELDGPYGLAYLRPDEDRDIVCIAGGSGLAPMLSILRGAARSPY------------- 124 (232)
T ss_pred ----CCC--------------CEEEEECCcccceecCCCCCcEEEEeeCcCHHHHHHHHHHHHhccc-------------
Confidence 233 6899999999986543456799999999999999999999876421
Q ss_pred cccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCchhhHHHHHHHHHhhcCCCcEEEEEEecccccCCChhhH
Q 002830 712 ASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPGSFEWFKGVMDQVAEMDLKGQIELHNYLTSVYEEGDARST 791 (875)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~eWf~~~L~el~e~~~~~~iev~~ylT~~~~~~d~rs~ 791 (875)
....+++++|++|+.+++ .|.+.+.++++. ...++++..+|+..+..+..
T Consensus 125 -------------------------~~~~~v~l~~~~r~~~~~-~~~~el~~l~~~--~~~~~~~~~~s~~~~~~~~~-- 174 (232)
T cd06190 125 -------------------------LSDRPVDLFYGGRTPSDL-CALDELSALVAL--GARLRVTPAVSDAGSGSAAG-- 174 (232)
T ss_pred -------------------------CCCCeEEEEEeecCHHHH-hhHHHHHHHHHh--CCCEEEEEEeCCCCCCcCCC--
Confidence 124789999999999987 578888888764 33577777766432110000
Q ss_pred HHHHHHhhhcccCCcccccCCeeeeecCCCCHHHHHHHHHhhCCCCeEEEEEeCchHHHHHHHHHHHhhccCCCCeEEEE
Q 002830 792 LITMVQALNHAKHGVDILSGTRVRTHFARPNWKEVFSRVATKHPNATIGVFYCGMPVLAKELKKLSHELTHRTSTRFEFH 871 (875)
Q Consensus 792 l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~~~v~~~~~~~~~~~~v~Vf~CGPp~l~~~lr~~~~~~~~~~~~~f~fh 871 (875)
.....|+.. +.+.+..... .....||+|||++|++.+++.+.+... ...-.+|
T Consensus 175 ----------------------~~~~~g~v~--~~l~~~~~~~-~~~~~vyiCGp~~m~~~v~~~l~~~g~--~~~~~i~ 227 (232)
T cd06190 175 ----------------------WDGPTGFVH--EVVEATLGDR-LAEFEFYFAGPPPMVDAVQRMLMIEGV--VPFDQIH 227 (232)
T ss_pred ----------------------ccCCcCcHH--HHHHhhccCC-ccccEEEEECCHHHHHHHHHHHHHhCC--CChHhee
Confidence 000112322 2333332221 223579999999999999998887421 1244578
Q ss_pred EecC
Q 002830 872 KEYF 875 (875)
Q Consensus 872 kE~F 875 (875)
.|.|
T Consensus 228 ~e~f 231 (232)
T cd06190 228 FDRF 231 (232)
T ss_pred eccc
Confidence 8877
No 24
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.94 E-value=3.1e-25 Score=232.93 Aligned_cols=220 Identities=18% Similarity=0.326 Sum_probs=163.5
Q ss_pred EEEEeeCCCEEEEEEecCCCcccCCCcEEEEECCCCCCcccccceeecCCCC-CeEEEEEEec--CCCcHHHHHHhhhcc
Q 002830 555 LKVSVLPGNVLSIVMSKPNGFRYRSGQYIFLQCPTISSFEWHPFSITSAPGD-DHLSVHIRIV--GDWTHELKQVFTEDK 631 (875)
Q Consensus 555 ~~v~~l~~~vl~L~~~~p~~~~ykpGQyvfL~~p~is~~e~HPFTItSaP~d-d~lsl~IR~~--G~wT~~L~~~~~~~~ 631 (875)
+++..+++++.+++++.|..+.|+||||+.|.+|..+. ++|||||+|.|.+ +.++++||.. |.+|+.|.+.+
T Consensus 2 ~~~~~~~~~~~~~~l~~~~~~~~~pGq~i~l~~~~~~~-~~r~ysi~s~~~~~~~~~~~i~~~~~G~~s~~l~~~l---- 76 (224)
T cd06187 2 VSVERLTHDIAVVRLQLDQPLPFWAGQYVNVTVPGRPR-TWRAYSPANPPNEDGEIEFHVRAVPGGRVSNALHDEL---- 76 (224)
T ss_pred eeeeecCCCEEEEEEEeCCCCCcCCCceEEEEcCCCCC-cceeccccCCCCCCCEEEEEEEeCCCCcchHHHhhcC----
Confidence 45678889999999998888899999999999986543 7899999999875 7899999998 88998887632
Q ss_pred cccccCCccccccCCCCCCCCCEEEEECcCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhccccCCCcccc
Q 002830 632 DSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAAAQDYSNYDVLLLVGLGIGATPFISILRDLLNNTREELMDSNTDSSRS 711 (875)
Q Consensus 632 ~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~~~~~~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~~~~~~~~~~ 711 (875)
.+| ..+.|.||||.+......++++||||||+||||++|+++++..+.
T Consensus 77 ----~~G--------------~~v~i~gP~G~~~~~~~~~~~~lliagG~GI~p~~sll~~~~~~~-------------- 124 (224)
T cd06187 77 ----KVG--------------DRVRLSGPYGTFYLRRDHDRPVLCIAGGTGLAPLRAIVEDALRRG-------------- 124 (224)
T ss_pred ----ccC--------------CEEEEeCCccceEecCCCCCCEEEEecCcCHHHHHHHHHHHHhcC--------------
Confidence 234 789999999998654344789999999999999999999987541
Q ss_pred cccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCchhhHHHHHHHHHhhcCCCcEEEEEEecccccCCChhhH
Q 002830 712 ASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPGSFEWFKGVMDQVAEMDLKGQIELHNYLTSVYEEGDARST 791 (875)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~eWf~~~L~el~e~~~~~~iev~~ylT~~~~~~d~rs~ 791 (875)
..+++.++|.+|+.+++ ++.+.++++++. ...+.++.++|+..+...
T Consensus 125 --------------------------~~~~v~l~~~~~~~~~~-~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~---- 171 (224)
T cd06187 125 --------------------------EPRPVHLFFGARTERDL-YDLEGLLALAAR--HPWLRVVPVVSHEEGAWT---- 171 (224)
T ss_pred --------------------------CCCCEEEEEecCChhhh-cChHHHHHHHHh--CCCeEEEEEeCCCCCccC----
Confidence 14689999999999987 577777777654 234777766664211000
Q ss_pred HHHHHHhhhcccCCcccccCCeeeeecCCCCHHHHHHHHHhhCCCCeEEEEEeCchHHHHHHHHHHHhhccCCCCeEEEE
Q 002830 792 LITMVQALNHAKHGVDILSGTRVRTHFARPNWKEVFSRVATKHPNATIGVFYCGMPVLAKELKKLSHELTHRTSTRFEFH 871 (875)
Q Consensus 792 l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~~~v~~~~~~~~~~~~v~Vf~CGPp~l~~~lr~~~~~~~~~~~~~f~fh 871 (875)
| .+-...+.+.+... +.....||+|||++|++++++.+++. |...-.+|
T Consensus 172 -------------------~-------~~g~~~~~~~~~~~--~~~~~~v~vcGp~~~~~~v~~~l~~~---G~~~~~i~ 220 (224)
T cd06187 172 -------------------G-------RRGLVTDVVGRDGP--DWADHDIYICGPPAMVDATVDALLAR---GAPPERIH 220 (224)
T ss_pred -------------------C-------CcccHHHHHHHhcc--ccccCEEEEECCHHHHHHHHHHHHHc---CCCHHHee
Confidence 0 01112222222111 12235799999999999999999874 44455677
Q ss_pred EecC
Q 002830 872 KEYF 875 (875)
Q Consensus 872 kE~F 875 (875)
.|.|
T Consensus 221 ~e~f 224 (224)
T cd06187 221 FDKF 224 (224)
T ss_pred ccCC
Confidence 7776
No 25
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=99.94 E-value=5.7e-25 Score=233.64 Aligned_cols=230 Identities=21% Similarity=0.317 Sum_probs=171.8
Q ss_pred eeeEEEEEEeeCCCEEEEEEecCCC----cccCCCcEEEEECCCCCCcccccceeecCCCCCeEEEEEEec--CCCcHHH
Q 002830 550 FSAKDLKVSVLPGNVLSIVMSKPNG----FRYRSGQYIFLQCPTISSFEWHPFSITSAPGDDHLSVHIRIV--GDWTHEL 623 (875)
Q Consensus 550 ~~~~i~~v~~l~~~vl~L~~~~p~~----~~ykpGQyvfL~~p~is~~e~HPFTItSaP~dd~lsl~IR~~--G~wT~~L 623 (875)
+.++|++++.+++++.+++++.|.+ +.|+||||+.|++|..+...+|||||+|.|+++++.|+||.. |..|..|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~~~g~~~~r~ysi~s~~~~~~l~~~i~~~~~G~~s~~l 81 (241)
T cd06214 2 HPLTVAEVVRETADAVSITFDVPEELRDAFRYRPGQFLTLRVPIDGEEVRRSYSICSSPGDDELRITVKRVPGGRFSNWA 81 (241)
T ss_pred ceEEEEEEEecCCCeEEEEEecCcccCCCCCcCCCCeEEEEeecCCCeeeeeeeecCCCCCCcEEEEEEEcCCCccchhH
Confidence 4577889999999999999998764 589999999999996566689999999999888999999997 6678877
Q ss_pred HHHhhhcccccccCCccccccCCCCCCCCCEEEEECcCCCCCCCCC-CCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhcc
Q 002830 624 KQVFTEDKDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAAAQDYS-NYDVLLLVGLGIGATPFISILRDLLNNTREELM 702 (875)
Q Consensus 624 ~~~~~~~~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~~~~~~-~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~ 702 (875)
.+.+ ++| ..+.|.||+|.+..... +++++||||||+||||+++++++++...
T Consensus 82 ~~~~--------~~G--------------~~v~i~gP~G~~~~~~~~~~~~~llia~GtGiap~~~~~~~~~~~~----- 134 (241)
T cd06214 82 NDEL--------KAG--------------DTLEVMPPAGRFTLPPLPGARHYVLFAAGSGITPVLSILKTALARE----- 134 (241)
T ss_pred Hhcc--------CCC--------------CEEEEeCCccccccCCCCCCCcEEEEecccChhhHHHHHHHHHhcC-----
Confidence 6422 233 67999999998764333 5789999999999999999999987652
Q ss_pred ccCCCcccccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCchhhHHHHHHHHHhhcCCCcEEEEEEeccc
Q 002830 703 DSNTDSSRSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPGSFEWFKGVMDQVAEMDLKGQIELHNYLTSV 782 (875)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~eWf~~~L~el~e~~~~~~iev~~ylT~~ 782 (875)
..++++++|++|+.+++ +|.+.++++++. ....++++.++|..
T Consensus 135 -----------------------------------~~~~v~l~~~~r~~~~~-~~~~~l~~l~~~-~~~~~~~~~~~~~~ 177 (241)
T cd06214 135 -----------------------------------PASRVTLVYGNRTEASV-IFREELADLKAR-YPDRLTVIHVLSRE 177 (241)
T ss_pred -----------------------------------CCCcEEEEEEeCCHHHh-hHHHHHHHHHHh-CcCceEEEEEecCC
Confidence 14679999999999998 788888888654 23357777666642
Q ss_pred ccCCChhhHHHHHHHhhhcccCCcccccCCeeeeecCCCCHHHHHHHHHhh--CCCCeEEEEEeCchHHHHHHHHHHHhh
Q 002830 783 YEEGDARSTLITMVQALNHAKHGVDILSGTRVRTHFARPNWKEVFSRVATK--HPNATIGVFYCGMPVLAKELKKLSHEL 860 (875)
Q Consensus 783 ~~~~d~rs~l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~~~v~~~~~~~--~~~~~v~Vf~CGPp~l~~~lr~~~~~~ 860 (875)
... . ..+.||++.. ++.+.... .+.....||+|||+.|++.+++.+.+.
T Consensus 178 ~~~-~---------------------------~~~~g~~~~~-~~~~~~~~~~~~~~~~~v~icGp~~mv~~v~~~l~~~ 228 (241)
T cd06214 178 QGD-P---------------------------DLLRGRLDAA-KLNALLKNLLDATEFDEAFLCGPEPMMDAVEAALLEL 228 (241)
T ss_pred CCC-c---------------------------ccccCccCHH-HHHHhhhhhcccccCcEEEEECCHHHHHHHHHHHHHc
Confidence 110 0 0123565532 22222211 123346799999999999999999874
Q ss_pred ccCCCCeEEEEEecC
Q 002830 861 THRTSTRFEFHKEYF 875 (875)
Q Consensus 861 ~~~~~~~f~fhkE~F 875 (875)
+...-.+|.|.|
T Consensus 229 ---G~~~~~i~~e~f 240 (241)
T cd06214 229 ---GVPAERIHRELF 240 (241)
T ss_pred ---CCCHHHeecccc
Confidence 445556777776
No 26
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=99.94 E-value=5.8e-25 Score=233.56 Aligned_cols=227 Identities=19% Similarity=0.295 Sum_probs=168.5
Q ss_pred eeeEEEEEEeeCCCEEEEEEecCCCc--ccCCCcEEEEECCCCCCcccccceeecCCC-CCeEEEEEEec--CCCcHHHH
Q 002830 550 FSAKDLKVSVLPGNVLSIVMSKPNGF--RYRSGQYIFLQCPTISSFEWHPFSITSAPG-DDHLSVHIRIV--GDWTHELK 624 (875)
Q Consensus 550 ~~~~i~~v~~l~~~vl~L~~~~p~~~--~ykpGQyvfL~~p~is~~e~HPFTItSaP~-dd~lsl~IR~~--G~wT~~L~ 624 (875)
+.++|.+++.+++++..++++.|... .|+||||+.|++|... ++|||||+|.|. ++.+.|+||.. |..|+.|.
T Consensus 7 ~~~~v~~~~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~~~~~~~l~l~i~~~~~G~~s~~l~ 84 (238)
T cd06211 7 FEGTVVEIEDLTPTIKGVRLKLDEPEEIEFQAGQYVNLQAPGYE--GTRAFSIASSPSDAGEIELHIRLVPGGIATTYVH 84 (238)
T ss_pred EeEEEEEEEecCCCEEEEEEEcCCCCcCccCCCCeEEEEcCCCC--CccccccCCCCCCCCEEEEEEEECCCCcchhhHh
Confidence 46788899999999999999987754 8999999999998643 689999999996 57899999998 77898886
Q ss_pred HHhhhcccccccCCccccccCCCCCCCCCEEEEECcCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhcccc
Q 002830 625 QVFTEDKDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAAAQDYSNYDVLLLVGLGIGATPFISILRDLLNNTREELMDS 704 (875)
Q Consensus 625 ~~~~~~~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~~~~~~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~~~ 704 (875)
+.+ .+| ..|.|.||||.+.......+++||||||+||||++|++++++.+.
T Consensus 85 ~~l--------~~G--------------~~v~i~gP~G~~~~~~~~~~~~v~iagG~GiaP~~~~l~~~~~~~------- 135 (238)
T cd06211 85 KQL--------KEG--------------DELEISGPYGDFFVRDSDQRPIIFIAGGSGLSSPRSMILDLLERG------- 135 (238)
T ss_pred hcC--------CCC--------------CEEEEECCccceEecCCCCCCEEEEeCCcCHHHHHHHHHHHHhcC-------
Confidence 432 234 689999999998654344579999999999999999999987541
Q ss_pred CCCcccccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCchhhHHHHHHHHHhhcCCCcEEEEEEeccccc
Q 002830 705 NTDSSRSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPGSFEWFKGVMDQVAEMDLKGQIELHNYLTSVYE 784 (875)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~eWf~~~L~el~e~~~~~~iev~~ylT~~~~ 784 (875)
..+++.++|++|+.+++ +|.+.++++++.. ..+.++..+++..+
T Consensus 136 ---------------------------------~~~~v~l~~~~r~~~~~-~~~~~l~~l~~~~--~~~~~~~~~s~~~~ 179 (238)
T cd06211 136 ---------------------------------DTRKITLFFGARTRAEL-YYLDEFEALEKDH--PNFKYVPALSREPP 179 (238)
T ss_pred ---------------------------------CCCcEEEEEecCChhhh-ccHHHHHHHHHhC--CCeEEEEEECCCCC
Confidence 13679999999999997 7888888887642 24666666664321
Q ss_pred CCChhhHHHHHHHhhhcccCCcccccCCeeeeecCCCCHHHHHHHHHhhCCCCeEEEEEeCchHHHHHHHHHHHhhccCC
Q 002830 785 EGDARSTLITMVQALNHAKHGVDILSGTRVRTHFARPNWKEVFSRVATKHPNATIGVFYCGMPVLAKELKKLSHELTHRT 864 (875)
Q Consensus 785 ~~d~rs~l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~~~v~~~~~~~~~~~~v~Vf~CGPp~l~~~lr~~~~~~~~~~ 864 (875)
+ +. ..| ..||. .+++.+..... .....||+|||+.|++.+.+.+.+. |
T Consensus 180 ~-~~--------------------~~~-----~~g~v--~~~l~~~~~~~-~~~~~vyvCGp~~m~~~~~~~L~~~---G 227 (238)
T cd06211 180 E-SN--------------------WKG-----FTGFV--HDAAKKHFKND-FRGHKAYLCGPPPMIDACIKTLMQG---R 227 (238)
T ss_pred C-cC--------------------ccc-----ccCcH--HHHHHHhcccc-cccCEEEEECCHHHHHHHHHHHHHc---C
Confidence 1 10 001 11232 23444332211 1234799999999999999999885 4
Q ss_pred CCeEEEEEecC
Q 002830 865 STRFEFHKEYF 875 (875)
Q Consensus 865 ~~~f~fhkE~F 875 (875)
...-.+|.|.|
T Consensus 228 v~~~~i~~e~F 238 (238)
T cd06211 228 LFERDIYYEKF 238 (238)
T ss_pred CCHHHccccCC
Confidence 44556788877
No 27
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=99.93 E-value=3.5e-25 Score=241.46 Aligned_cols=231 Identities=19% Similarity=0.363 Sum_probs=168.6
Q ss_pred eeeeEEEEEEeeCCCEEEEEEecCCC--cccCCCcEEEEECCCC-----------------------------CCccccc
Q 002830 549 HFSAKDLKVSVLPGNVLSIVMSKPNG--FRYRSGQYIFLQCPTI-----------------------------SSFEWHP 597 (875)
Q Consensus 549 ~~~~~i~~v~~l~~~vl~L~~~~p~~--~~ykpGQyvfL~~p~i-----------------------------s~~e~HP 597 (875)
...++|++++.+.+++.+++++.|.+ +.|+||||+.|.+|.. ....+||
T Consensus 9 ~~~~~v~~~~~~~~d~~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ 88 (283)
T cd06188 9 KWECTVISNDNVATFIKELVLKLPSGEEIAFKAGGYIQIEIPAYEIAYADFDVAEKYRADWDKFGLWQLVFKHDEPVSRA 88 (283)
T ss_pred eEEEEEEEcccccchhhheEEecCCCceeeecCCceEEEEcCCccccccccccchhhhhHHhhhcccccccccCCccccc
Confidence 35578888999999999999998875 7899999999999853 1123599
Q ss_pred ceeecCCC-CCeEEEEEEe-----------cCCCcHHHHHHhhhcccccccCCccccccCCCCCCCCCEEEEECcCCCCC
Q 002830 598 FSITSAPG-DDHLSVHIRI-----------VGDWTHELKQVFTEDKDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAAA 665 (875)
Q Consensus 598 FTItSaP~-dd~lsl~IR~-----------~G~wT~~L~~~~~~~~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~~ 665 (875)
|||+|+|. ++.+.|+||. .|..|+.|.++ .+| ..|.|.||||.+.
T Consensus 89 ySias~p~~~~~l~l~vk~~~~~~~~~~~~~G~~S~~L~~l---------~~G--------------d~v~i~gP~G~f~ 145 (283)
T cd06188 89 YSLANYPAEEGELKLNVRIATPPPGNSDIPPGIGSSYIFNL---------KPG--------------DKVTASGPFGEFF 145 (283)
T ss_pred cCcCCCCCCCCeEEEEEEEeccCCccCCCCCceehhHHhcC---------CCC--------------CEEEEECcccccc
Confidence 99999996 5789999996 46677777652 234 7899999999987
Q ss_pred CCCCCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhccccCCCcccccccCcCCCCCCCCCCccccCCCCCCCCCceEEEE
Q 002830 666 QDYSNYDVLLLVGLGIGATPFISILRDLLNNTREELMDSNTDSSRSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFY 745 (875)
Q Consensus 666 ~~~~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~ 745 (875)
.+ ...+++|||||||||||++|++++++.... ..++++|+
T Consensus 146 l~-~~~~~~vlIAgGtGItP~~s~l~~~~~~~~---------------------------------------~~~~v~l~ 185 (283)
T cd06188 146 IK-DTDREMVFIGGGAGMAPLRSHIFHLLKTLK---------------------------------------SKRKISFW 185 (283)
T ss_pred cc-CCCCcEEEEEecccHhHHHHHHHHHHhcCC---------------------------------------CCceEEEE
Confidence 54 356789999999999999999999875421 14689999
Q ss_pred EEeCCCCchhhHHHHHHHHHhhcCCCcEEEEEEecccccCCChhhHHHHHHHhhhcccCCcccccCCeeeeecCCCCHHH
Q 002830 746 WVTREPGSFEWFKGVMDQVAEMDLKGQIELHNYLTSVYEEGDARSTLITMVQALNHAKHGVDILSGTRVRTHFARPNWKE 825 (875)
Q Consensus 746 Wv~R~~~s~eWf~~~L~el~e~~~~~~iev~~ylT~~~~~~d~rs~l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~~~ 825 (875)
|++|+.+++ +|.+.|.++++.. ..++++..+|+..+. |.. .| ..||.+- .
T Consensus 186 ~g~r~~~d~-~~~~el~~l~~~~--~~~~~~~~~s~~~~~-~~~--------------------~~-----~~G~v~~-~ 235 (283)
T cd06188 186 YGARSLKEL-FYQEEFEALEKEF--PNFKYHPVLSEPQPE-DNW--------------------DG-----YTGFIHQ-V 235 (283)
T ss_pred EecCCHHHh-hHHHHHHHHHHHC--CCeEEEEEECCCCcc-CCC--------------------CC-----cceeecH-H
Confidence 999999887 7888888887542 347777666643210 100 00 1123221 1
Q ss_pred HHHHHHhhCC-CCeEEEEEeCchHHHHHHHHHHHhhccCCCCeEEEEEecC
Q 002830 826 VFSRVATKHP-NATIGVFYCGMPVLAKELKKLSHELTHRTSTRFEFHKEYF 875 (875)
Q Consensus 826 v~~~~~~~~~-~~~v~Vf~CGPp~l~~~lr~~~~~~~~~~~~~f~fhkE~F 875 (875)
+.+.....+. ..+..||+|||+.|++.+++.+.+. +...-.+|.|.|
T Consensus 236 ~~~~~~~~~~~~~~~~vyiCGP~~m~~~~~~~l~~~---Gv~~~~i~~e~F 283 (283)
T cd06188 236 LLENYLKKHPAPEDIEFYLCGPPPMNSAVIKMLDDL---GVPRENIAFDDF 283 (283)
T ss_pred HHHHHhccCCCCCCeEEEEECCHHHHHHHHHHHHHc---CCCHHHeeccCC
Confidence 3333222221 2346799999999999999999885 455667888887
No 28
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=99.93 E-value=5.6e-25 Score=229.95 Aligned_cols=208 Identities=24% Similarity=0.375 Sum_probs=158.1
Q ss_pred EEeeCCCEEEEEEecCCCcccCCCcEEEEECCCCCCcccccceeecCCCC-CeEEEEEEec--CCCcHHHHHHhhhcccc
Q 002830 557 VSVLPGNVLSIVMSKPNGFRYRSGQYIFLQCPTISSFEWHPFSITSAPGD-DHLSVHIRIV--GDWTHELKQVFTEDKDS 633 (875)
Q Consensus 557 v~~l~~~vl~L~~~~p~~~~ykpGQyvfL~~p~is~~e~HPFTItSaP~d-d~lsl~IR~~--G~wT~~L~~~~~~~~~~ 633 (875)
++.+.+++..+++..|....|+||||+.|.+|..+...+|||||+|.|.+ +.++|+||.. |.+|+.|.+.
T Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~~~~~l~vk~~~~G~~s~~l~~~------- 75 (223)
T cd00322 3 TEDVTDDVRLFRLQLPNGFSFKPGQYVDLHLPGDGRGLRRAYSIASSPDEEGELELTVKIVPGGPFSAWLHDL------- 75 (223)
T ss_pred eEEecCCeEEEEEecCCCCCcCCCcEEEEEecCCCCcceeeeeccCCCCCCCeEEEEEEEeCCCchhhHHhcC-------
Confidence 45667899999999887788999999999999755678999999999976 8999999999 9999998764
Q ss_pred cccCCccccccCCCCCCCCCEEEEECcCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhccccCCCcccccc
Q 002830 634 TYAIGRAEFGQGGTNRRIQPRLLVDGPYGAAAQDYSNYDVLLLVGLGIGATPFISILRDLLNNTREELMDSNTDSSRSAS 713 (875)
Q Consensus 634 ~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~~~~~~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~~~~~~~~~~~~ 713 (875)
.+| .++.|.||||.+......++++||||||+||||++|+++++..+.
T Consensus 76 --~~G--------------~~v~i~gP~G~~~~~~~~~~~~v~ia~G~Giap~~~~l~~~~~~~---------------- 123 (223)
T cd00322 76 --KPG--------------DEVEVSGPGGDFFLPLEESGPVVLIAGGIGITPFRSMLRHLAADK---------------- 123 (223)
T ss_pred --CCC--------------CEEEEECCCcccccCcccCCcEEEEecCCchhHHHHHHHHHHhhC----------------
Confidence 233 789999999998544567789999999999999999999987652
Q ss_pred cCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCchhhHHHHHHHHHhhcCCCcEEEEEEecccccCCChhhHHH
Q 002830 714 LNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPGSFEWFKGVMDQVAEMDLKGQIELHNYLTSVYEEGDARSTLI 793 (875)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~eWf~~~L~el~e~~~~~~iev~~ylT~~~~~~d~rs~l~ 793 (875)
..++++++|++|+.+++ +|.+.+.++++. ...++++.++++.......
T Consensus 124 ------------------------~~~~v~l~~~~r~~~~~-~~~~el~~l~~~--~~~~~~~~~~~~~~~~~~~----- 171 (223)
T cd00322 124 ------------------------PGGEITLLYGARTPADL-LFLDELEELAKE--GPNFRLVLALSRESEAKLG----- 171 (223)
T ss_pred ------------------------CCCcEEEEEecCCHHHh-hHHHHHHHHHHh--CCCeEEEEEecCCCCCCCc-----
Confidence 14789999999999987 788888888763 3457777777643211000
Q ss_pred HHHHhhhcccCCcccccCCeeeeecCCCCHHHHHHHHHhhCCCCeEEEEEeCchHHHHHHHHHHHhh
Q 002830 794 TMVQALNHAKHGVDILSGTRVRTHFARPNWKEVFSRVATKHPNATIGVFYCGMPVLAKELKKLSHEL 860 (875)
Q Consensus 794 ~m~q~l~~~k~g~divsg~rv~~~~gRPd~~~v~~~~~~~~~~~~v~Vf~CGPp~l~~~lr~~~~~~ 860 (875)
..++....+.+.... .......||+|||+.|++.+++.+.+.
T Consensus 172 -----------------------~~~~~~~~~~~~~~~--~~~~~~~~yvCGp~~m~~~~~~~L~~~ 213 (223)
T cd00322 172 -----------------------PGGRIDREAEILALL--PDDSGALVYICGPPAMAKAVREALVSL 213 (223)
T ss_pred -----------------------ccceeeHHHHHHhhc--ccccCCEEEEECCHHHHHHHHHHHHHc
Confidence 001111111222111 112345799999999999999999875
No 29
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.93 E-value=1.4e-24 Score=243.87 Aligned_cols=231 Identities=19% Similarity=0.251 Sum_probs=168.8
Q ss_pred eeeEEEEEEeeCCCEEEEEEecCC----CcccCCCcEEEEECCCCCCcccccceeecCCCCCeEEEEEEec--CCCcHHH
Q 002830 550 FSAKDLKVSVLPGNVLSIVMSKPN----GFRYRSGQYIFLQCPTISSFEWHPFSITSAPGDDHLSVHIRIV--GDWTHEL 623 (875)
Q Consensus 550 ~~~~i~~v~~l~~~vl~L~~~~p~----~~~ykpGQyvfL~~p~is~~e~HPFTItSaP~dd~lsl~IR~~--G~wT~~L 623 (875)
+.++|.+++.+++++.+|+|+.|. .+.|+||||+.|.+|.-+...+|||||+|.|++++++|+||.. |..|..|
T Consensus 2 ~~~~V~~i~~~t~~~~~l~l~~~~~~~~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~p~~~~l~i~vk~~~~G~~S~~l 81 (352)
T TIGR02160 2 HRLTVAEVERLTADAVAISFEIPDELAEDYRFAPGQHLTLRREVDGEELRRSYSICSAPAPGEIRVAVKKIPGGLFSTWA 81 (352)
T ss_pred eEeEEEEEEecCCCeEEEEEeCCccccccCCCCCCCeEEEEEecCCcEeeeeccccCCCCCCcEEEEEEEeCCCcchHHH
Confidence 467788999999999999999764 3689999999999974444568999999999888999999987 4567777
Q ss_pred HHHhhhcccccccCCccccccCCCCCCCCCEEEEECcCCCCCCCC--CCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhc
Q 002830 624 KQVFTEDKDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAAAQDY--SNYDVLLLVGLGIGATPFISILRDLLNNTREEL 701 (875)
Q Consensus 624 ~~~~~~~~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~~~~~--~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~ 701 (875)
.+.+ .+| ..+.|.||||.+..+. ...+++|||||||||||++|++++++.+.
T Consensus 82 ~~~l--------~~G--------------d~v~v~gP~G~f~~~~~~~~~~~~lliagG~GItP~~s~l~~~~~~~---- 135 (352)
T TIGR02160 82 NDEI--------RPG--------------DTLEVMAPQGLFTPDLSTPHAGHYVAVAAGSGITPMLSIAETVLAAE---- 135 (352)
T ss_pred HhcC--------CCC--------------CEEEEeCCceeeecCCCccccccEEEEeccccHhHHHHHHHHHHhcC----
Confidence 5432 334 7899999999975432 23478999999999999999999987641
Q ss_pred cccCCCcccccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCchhhHHHHHHHHHhhcCCCcEEEEEEecc
Q 002830 702 MDSNTDSSRSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPGSFEWFKGVMDQVAEMDLKGQIELHNYLTS 781 (875)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~eWf~~~L~el~e~~~~~~iev~~ylT~ 781 (875)
..++++|+|++|+.+++ +|.+.|+++++. ....+.++..+++
T Consensus 136 ------------------------------------~~~~v~l~~~~r~~~d~-~~~~el~~l~~~-~~~~~~~~~~~s~ 177 (352)
T TIGR02160 136 ------------------------------------PRSTFTLVYGNRRTASV-MFAEELADLKDK-HPQRFHLAHVLSR 177 (352)
T ss_pred ------------------------------------CCceEEEEEEeCCHHHH-HHHHHHHHHHHh-CcCcEEEEEEecC
Confidence 14689999999999997 788888888753 2334777776664
Q ss_pred cccCCChhhHHHHHHHhhhcccCCcccccCCeeeeecCCCCHHHHHHHHHhhC-CCCeEEEEEeCchHHHHHHHHHHHhh
Q 002830 782 VYEEGDARSTLITMVQALNHAKHGVDILSGTRVRTHFARPNWKEVFSRVATKH-PNATIGVFYCGMPVLAKELKKLSHEL 860 (875)
Q Consensus 782 ~~~~~d~rs~l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~~~v~~~~~~~~-~~~~v~Vf~CGPp~l~~~lr~~~~~~ 860 (875)
.....+ ...||.+...+-..+.... ......||+|||+.|++.+++.+.+.
T Consensus 178 ~~~~~~----------------------------~~~gr~~~~~l~~~l~~~~~~~~~~~vyiCGp~~m~~~v~~~L~~~ 229 (352)
T TIGR02160 178 EPREAP----------------------------LLSGRLDGERLAALLDSLIDVDRADEWFLCGPQAMVDDAEQALTGL 229 (352)
T ss_pred CCcCcc----------------------------cccCccCHHHHHHHHHhccCcccCCEEEEECCHHHHHHHHHHHHHc
Confidence 211100 1135666432222221111 12234799999999999999999874
Q ss_pred ccCCCCeEEEEEecC
Q 002830 861 THRTSTRFEFHKEYF 875 (875)
Q Consensus 861 ~~~~~~~f~fhkE~F 875 (875)
+...-.+|.|.|
T Consensus 230 ---Gv~~~~i~~E~F 241 (352)
T TIGR02160 230 ---GVPAGRVHLELF 241 (352)
T ss_pred ---CCCHHHEEEEec
Confidence 444556777776
No 30
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.93 E-value=1.6e-24 Score=242.15 Aligned_cols=226 Identities=22% Similarity=0.358 Sum_probs=166.8
Q ss_pred eeeeeEEEEEEeeCCCEEEEEEecCC--CcccCCCcEEEEECCCCCCcccccceeecCCCC-CeEEEEEEec--CCCcHH
Q 002830 548 GHFSAKDLKVSVLPGNVLSIVMSKPN--GFRYRSGQYIFLQCPTISSFEWHPFSITSAPGD-DHLSVHIRIV--GDWTHE 622 (875)
Q Consensus 548 ~~~~~~i~~v~~l~~~vl~L~~~~p~--~~~ykpGQyvfL~~p~is~~e~HPFTItSaP~d-d~lsl~IR~~--G~wT~~ 622 (875)
..+.++|++++.+++++..|++..|. .+.|+||||+.|.+|.. ++|||||+|.|++ +++.|+||.. |..|+.
T Consensus 101 ~~~~~~V~~~~~~~~d~~~l~l~~~~~~~~~~~pGQfv~l~~~~~---~~R~ySias~p~~~~~l~~~ik~~~~G~~s~~ 177 (339)
T PRK07609 101 KKLPCRVASLERVAGDVMRLKLRLPATERLQYLAGQYIEFILKDG---KRRSYSIANAPHSGGPLELHIRHMPGGVFTDH 177 (339)
T ss_pred eEEEEEEEEEEcCCCcEEEEEEEcCCCCCCccCCCCeEEEECCCC---ceeeeecCCCCCCCCEEEEEEEecCCCccHHH
Confidence 34568899999999999999998773 57899999999999852 5899999999975 7999999976 677888
Q ss_pred HHHHhhhcccccccCCccccccCCCCCCCCCEEEEECcCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhcc
Q 002830 623 LKQVFTEDKDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAAAQDYSNYDVLLLVGLGIGATPFISILRDLLNNTREELM 702 (875)
Q Consensus 623 L~~~~~~~~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~~~~~~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~ 702 (875)
|.+.+ .+| ..+.|+||||.+..+....+++||||||+||||++|++++++...
T Consensus 178 l~~~l--------~~G--------------~~v~v~gP~G~~~~~~~~~~~ivlIagGtGiaP~~s~l~~~~~~~----- 230 (339)
T PRK07609 178 VFGAL--------KER--------------DILRIEGPLGTFFLREDSDKPIVLLASGTGFAPIKSIVEHLRAKG----- 230 (339)
T ss_pred HHHhc--------cCC--------------CEEEEEcCceeEEecCCCCCCEEEEecCcChhHHHHHHHHHHhcC-----
Confidence 76543 334 689999999998754446678999999999999999999997541
Q ss_pred ccCCCcccccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCchhhHHHHHHHHHhhcCCCcEEEEEEeccc
Q 002830 703 DSNTDSSRSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPGSFEWFKGVMDQVAEMDLKGQIELHNYLTSV 782 (875)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~eWf~~~L~el~e~~~~~~iev~~ylT~~ 782 (875)
..++++|+|++|+.+++ .+.+.++++++.. +.+.++..+++.
T Consensus 231 -----------------------------------~~~~i~l~~g~r~~~dl-~~~e~l~~~~~~~--~~~~~~~~~s~~ 272 (339)
T PRK07609 231 -----------------------------------IQRPVTLYWGARRPEDL-YLSALAEQWAEEL--PNFRYVPVVSDA 272 (339)
T ss_pred -----------------------------------CCCcEEEEEecCChHHh-ccHHHHHHHHHhC--CCeEEEEEecCC
Confidence 14679999999999987 5677777776542 357777777653
Q ss_pred ccCCChhhHHHHHHHhhhcccCCcccccCCeeeeecCCCCHHHHHHHHHhhCC-CCeEEEEEeCchHHHHHHHHHHHhhc
Q 002830 783 YEEGDARSTLITMVQALNHAKHGVDILSGTRVRTHFARPNWKEVFSRVATKHP-NATIGVFYCGMPVLAKELKKLSHELT 861 (875)
Q Consensus 783 ~~~~d~rs~l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~~~v~~~~~~~~~-~~~v~Vf~CGPp~l~~~lr~~~~~~~ 861 (875)
.. .+. ..| +.|+. .+.+ .+..+ .....||+|||+.|++.+++.+.+.
T Consensus 273 ~~-~~~--------------------~~g-----~~G~v--~~~~---~~~~~~~~~~~vy~CGp~~m~~~~~~~l~~~- 320 (339)
T PRK07609 273 LD-DDA--------------------WTG-----RTGFV--HQAV---LEDFPDLSGHQVYACGSPVMVYAARDDFVAA- 320 (339)
T ss_pred CC-CCC--------------------ccC-----ccCcH--HHHH---HhhcccccCCEEEEECCHHHHHHHHHHHHHc-
Confidence 11 110 001 11221 1111 11111 1235799999999999999999874
Q ss_pred cCCCCeEEEEEecC
Q 002830 862 HRTSTRFEFHKEYF 875 (875)
Q Consensus 862 ~~~~~~f~fhkE~F 875 (875)
+...-.+|.|.|
T Consensus 321 --G~~~~~i~~e~F 332 (339)
T PRK07609 321 --GLPAEEFFADAF 332 (339)
T ss_pred --CCCHHHeEEeec
Confidence 445556788877
No 31
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.93 E-value=2.1e-24 Score=240.48 Aligned_cols=225 Identities=21% Similarity=0.273 Sum_probs=167.5
Q ss_pred eeeEEEEEEeeCCCEEEEEEecCCCcccCCCcEEEEECCCCCCcccccceeecCCCC-CeEEEEEEec--CCCcHHHHHH
Q 002830 550 FSAKDLKVSVLPGNVLSIVMSKPNGFRYRSGQYIFLQCPTISSFEWHPFSITSAPGD-DHLSVHIRIV--GDWTHELKQV 626 (875)
Q Consensus 550 ~~~~i~~v~~l~~~vl~L~~~~p~~~~ykpGQyvfL~~p~is~~e~HPFTItSaP~d-d~lsl~IR~~--G~wT~~L~~~ 626 (875)
+.++|.++..+.+++..+++..++.+.|+||||+.|.+|.. ...+|||||+|.|.+ +++.|+||.. |..|+.|.+.
T Consensus 10 ~~~~V~~i~~~t~~v~~l~l~~~~~~~f~pGQfv~l~~~~~-~~~~R~ySias~p~~~~~l~i~Vk~~~~G~~S~~L~~~ 88 (332)
T PRK10684 10 NRMQVHSIVQETPDVWTISLICHDFYPYRAGQYALVSIRNS-AETLRAYTLSSTPGVSEFITLTVRRIDDGVGSQWLTRD 88 (332)
T ss_pred eeEEEEEEEccCCCeEEEEEcCCCCCCcCCCCEEEEEecCC-CEeeeeecccCCCCCCCcEEEEEEEcCCCcchhHHHhc
Confidence 35678889999999999999887788999999999999853 345799999999964 6899999987 6678877643
Q ss_pred hhhcccccccCCccccccCCCCCCCCCEEEEECcCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhccccCC
Q 002830 627 FTEDKDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAAAQDYSNYDVLLLVGLGIGATPFISILRDLLNNTREELMDSNT 706 (875)
Q Consensus 627 ~~~~~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~~~~~~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~~~~~ 706 (875)
+ .+| .+|.|.||+|.+..+-...+++|||||||||||++|++++++.+.
T Consensus 89 l--------~~G--------------d~v~v~gP~G~f~l~~~~~~~~vliAgG~GItP~~sml~~~~~~~--------- 137 (332)
T PRK10684 89 V--------KRG--------------DYLWLSDAMGEFTCDDKAEDKYLLLAAGCGVTPIMSMRRWLLKNR--------- 137 (332)
T ss_pred C--------CCC--------------CEEEEeCCccccccCCCCCCcEEEEecCcCcchHHHHHHHHHhcC---------
Confidence 2 334 789999999998643345678999999999999999999987541
Q ss_pred CcccccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCchhhHHHHHHHHHhhcCCCcEEEEEEecccccCC
Q 002830 707 DSSRSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPGSFEWFKGVMDQVAEMDLKGQIELHNYLTSVYEEG 786 (875)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~eWf~~~L~el~e~~~~~~iev~~ylT~~~~~~ 786 (875)
..++++|+|++|+.+++ .|.++|+++++.. ..+.++.+.+...
T Consensus 138 -------------------------------~~~~v~l~y~~r~~~~~-~~~~el~~l~~~~--~~~~~~~~~~~~~--- 180 (332)
T PRK10684 138 -------------------------------PQADVQVIFNVRTPQDV-IFADEWRQLKQRY--PQLNLTLVAENNA--- 180 (332)
T ss_pred -------------------------------CCCCEEEEEeCCChHHh-hhHHHHHHHHHHC--CCeEEEEEeccCC---
Confidence 14689999999999998 5888888887642 2355555443210
Q ss_pred ChhhHHHHHHHhhhcccCCcccccCCeeeeecCCCCHHHHHHHHHhhCCCCeEEEEEeCchHHHHHHHHHHHhhccCCCC
Q 002830 787 DARSTLITMVQALNHAKHGVDILSGTRVRTHFARPNWKEVFSRVATKHPNATIGVFYCGMPVLAKELKKLSHELTHRTST 866 (875)
Q Consensus 787 d~rs~l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~~~v~~~~~~~~~~~~v~Vf~CGPp~l~~~lr~~~~~~~~~~~~ 866 (875)
. .| ...||.+.. ++.+..... ....||+|||+.|++.+++.+.+. |.+
T Consensus 181 ~----------------------~~----~~~grl~~~-~l~~~~~~~--~~~~vyiCGP~~m~~~v~~~l~~~---Gv~ 228 (332)
T PRK10684 181 T----------------------EG----FIAGRLTRE-LLQQAVPDL--ASRTVMTCGPAPYMDWVEQEVKAL---GVT 228 (332)
T ss_pred C----------------------CC----ccccccCHH-HHHHhcccc--cCCEEEEECCHHHHHHHHHHHHHc---CCC
Confidence 0 00 123666643 333322111 124699999999999999998874 445
Q ss_pred eEEEEEecC
Q 002830 867 RFEFHKEYF 875 (875)
Q Consensus 867 ~f~fhkE~F 875 (875)
.-.+|.|.|
T Consensus 229 ~~~i~~E~F 237 (332)
T PRK10684 229 ADRFFKEKF 237 (332)
T ss_pred HHHeEeecc
Confidence 566788887
No 32
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.93 E-value=1.6e-24 Score=226.78 Aligned_cols=203 Identities=23% Similarity=0.389 Sum_probs=153.9
Q ss_pred eeEEEEEEeeCCCEEEEEEecCCCcccCCCcEEEEECCCCC-CcccccceeecCCCCCeEEEEEEec---CCCcHHHHHH
Q 002830 551 SAKDLKVSVLPGNVLSIVMSKPNGFRYRSGQYIFLQCPTIS-SFEWHPFSITSAPGDDHLSVHIRIV---GDWTHELKQV 626 (875)
Q Consensus 551 ~~~i~~v~~l~~~vl~L~~~~p~~~~ykpGQyvfL~~p~is-~~e~HPFTItSaP~dd~lsl~IR~~---G~wT~~L~~~ 626 (875)
.++|++++.+++++.+++++.|..+.|+||||+.|.++..+ ..++|||||+|.|+++.+.|+||.. |+.|+.|.++
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~~~l~~~vk~~~~~g~~s~~l~~l 81 (218)
T cd06196 2 TVTLLSIEPVTHDVKRLRFDKPEGYDFTPGQATEVAIDKPGWRDEKRPFTFTSLPEDDVLEFVIKSYPDHDGVTEQLGRL 81 (218)
T ss_pred ceEEEEEEEcCCCeEEEEEcCCCcCCCCCCCEEEEEeeCCCCCccccccccccCCCCCeEEEEEEEcCCCCcHhHHHHhC
Confidence 46788899999999999999988899999999999987543 3478999999999889999999986 6688877543
Q ss_pred hhhcccccccCCccccccCCCCCCCCCEEEEECcCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhccccCC
Q 002830 627 FTEDKDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAAAQDYSNYDVLLLVGLGIGATPFISILRDLLNNTREELMDSNT 706 (875)
Q Consensus 627 ~~~~~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~~~~~~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~~~~~ 706 (875)
.+| ..+.|.||||.+.. .+++||||||+||||++|++++++...
T Consensus 82 ---------~~G--------------~~v~i~gP~G~~~~----~~~~vlia~GtGiaP~~s~l~~~~~~~--------- 125 (218)
T cd06196 82 ---------QPG--------------DTLLIEDPWGAIEY----KGPGVFIAGGAGITPFIAILRDLAAKG--------- 125 (218)
T ss_pred ---------CCC--------------CEEEEECCccceEe----cCceEEEecCCCcChHHHHHHHHHhCC---------
Confidence 344 78999999998642 257899999999999999999987641
Q ss_pred CcccccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCchhhHHHHHHHHHhhcCCCcEEEEEEecccccCC
Q 002830 707 DSSRSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPGSFEWFKGVMDQVAEMDLKGQIELHNYLTSVYEEG 786 (875)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~eWf~~~L~el~e~~~~~~iev~~ylT~~~~~~ 786 (875)
..++++++|++|+.+++ ++.+.++++.. ++++.++|....+
T Consensus 126 -------------------------------~~~~v~l~~~~r~~~~~-~~~~el~~l~~------~~~~~~~s~~~~~- 166 (218)
T cd06196 126 -------------------------------KLEGNTLIFANKTEKDI-ILKDELEKMLG------LKFINVVTDEKDP- 166 (218)
T ss_pred -------------------------------CCceEEEEEecCCHHHH-hhHHHHHHhhc------ceEEEEEcCCCCC-
Confidence 14678999999999887 67777777642 3455555531100
Q ss_pred ChhhHHHHHHHhhhcccCCcccccCCeeeeecCCCCHHHHHHHHHhhCCCCeEEEEEeCchHHHHHHHHHHHhh
Q 002830 787 DARSTLITMVQALNHAKHGVDILSGTRVRTHFARPNWKEVFSRVATKHPNATIGVFYCGMPVLAKELKKLSHEL 860 (875)
Q Consensus 787 d~rs~l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~~~v~~~~~~~~~~~~v~Vf~CGPp~l~~~lr~~~~~~ 860 (875)
+ ...||.+- +++++... .....||+|||+.|++++++.+.+.
T Consensus 167 ------------------------~----~~~g~~~~-~~l~~~~~---~~~~~vyiCGp~~m~~~~~~~l~~~ 208 (218)
T cd06196 167 ------------------------G----YAHGRIDK-AFLKQHVT---DFNQHFYVCGPPPMEEAINGALKEL 208 (218)
T ss_pred ------------------------C----eeeeEECH-HHHHHhcC---CCCCEEEEECCHHHHHHHHHHHHHc
Confidence 0 01245442 24444322 1124699999999999999999875
No 33
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=99.92 E-value=8.3e-24 Score=241.43 Aligned_cols=234 Identities=18% Similarity=0.282 Sum_probs=173.2
Q ss_pred eeeeeeEEEEEEeeCCCEEEEEEecCC---CcccCCCcEEEEECCCCC--CcccccceeecCCCCCeEEEEEEec--CCC
Q 002830 547 SGHFSAKDLKVSVLPGNVLSIVMSKPN---GFRYRSGQYIFLQCPTIS--SFEWHPFSITSAPGDDHLSVHIRIV--GDW 619 (875)
Q Consensus 547 ~~~~~~~i~~v~~l~~~vl~L~~~~p~---~~~ykpGQyvfL~~p~is--~~e~HPFTItSaP~dd~lsl~IR~~--G~w 619 (875)
..+..++|+++..+.+++..+++..|. .+.|+||||+.|.+|..+ ..+||||||+|.|+++++.|+||.. |..
T Consensus 152 ~~~~~~~V~~~~~~t~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~ySias~p~~~~l~~~Vk~~~~G~~ 231 (399)
T PRK13289 152 RGWRDFRVVKKVPESEVITSFYLEPVDGGPVADFKPGQYLGVRLDPEGEEYQEIRQYSLSDAPNGKYYRISVKREAGGKV 231 (399)
T ss_pred CCcEEEEEEEEEECCCCEEEEEEEcCCCCcCCCCCCCCeEEEEEecCCccccceeEEEeeeCCCCCeEEEEEEECCCCee
Confidence 345667888999999999999998764 368999999999986432 3357999999999888999999998 888
Q ss_pred cHHHHHHhhhcccccccCCccccccCCCCCCCCCEEEEECcCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHHHhhhh
Q 002830 620 THELKQVFTEDKDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAAAQDYSNYDVLLLVGLGIGATPFISILRDLLNNTRE 699 (875)
Q Consensus 620 T~~L~~~~~~~~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~~~~~~~yd~vlLVagGiGITP~iSiLkdll~~~~~ 699 (875)
|..|.+.+ .+| ..|.|.||||.+..+-...+++|||||||||||++|++++++++.
T Consensus 232 S~~L~~~l--------~~G--------------d~v~v~gP~G~f~l~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~-- 287 (399)
T PRK13289 232 SNYLHDHV--------NVG--------------DVLELAAPAGDFFLDVASDTPVVLISGGVGITPMLSMLETLAAQQ-- 287 (399)
T ss_pred hHHHhhcC--------CCC--------------CEEEEEcCccccccCCCCCCcEEEEecCccHHHHHHHHHHHHhcC--
Confidence 98887632 344 789999999998654445679999999999999999999987541
Q ss_pred hccccCCCcccccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCchhhHHHHHHHHHhhcCCCcEEEEEEe
Q 002830 700 ELMDSNTDSSRSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPGSFEWFKGVMDQVAEMDLKGQIELHNYL 779 (875)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~eWf~~~L~el~e~~~~~~iev~~yl 779 (875)
..++++++|++|+.+++ .|.+.|+++++.. ..++++.++
T Consensus 288 --------------------------------------~~~~v~l~~~~r~~~~~-~~~~eL~~l~~~~--~~~~~~~~~ 326 (399)
T PRK13289 288 --------------------------------------PKRPVHFIHAARNGGVH-AFRDEVEALAARH--PNLKAHTWY 326 (399)
T ss_pred --------------------------------------CCCCEEEEEEeCChhhc-hHHHHHHHHHHhC--CCcEEEEEE
Confidence 14789999999999997 6888888887542 257777766
Q ss_pred cccccCCChhhHHHHHHHhhhcccCCcccccCCeeeeecCCCCHHHHHHHHHhhCCCCeEEEEEeCchHHHHHHHHHHHh
Q 002830 780 TSVYEEGDARSTLITMVQALNHAKHGVDILSGTRVRTHFARPNWKEVFSRVATKHPNATIGVFYCGMPVLAKELKKLSHE 859 (875)
Q Consensus 780 T~~~~~~d~rs~l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~~~v~~~~~~~~~~~~v~Vf~CGPp~l~~~lr~~~~~ 859 (875)
++...+ +. .|. ...+.||.+.. ++.+... .....||+|||+.|++.+++.+.+
T Consensus 327 s~~~~~-~~---------------------~~~-~~~~~g~i~~~-~l~~~~~---~~~~~vyiCGp~~m~~~v~~~L~~ 379 (399)
T PRK13289 327 REPTEQ-DR---------------------AGE-DFDSEGLMDLE-WLEAWLP---DPDADFYFCGPVPFMQFVAKQLLE 379 (399)
T ss_pred CCCccc-cc---------------------cCC-cccccCcccHH-HHHhhCC---CCCCEEEEECCHHHHHHHHHHHHH
Confidence 642110 00 000 00112566633 3333221 124579999999999999999988
Q ss_pred hccCCCCeEEEEEecC
Q 002830 860 LTHRTSTRFEFHKEYF 875 (875)
Q Consensus 860 ~~~~~~~~f~fhkE~F 875 (875)
. |...-.+|.|.|
T Consensus 380 ~---Gv~~~~I~~E~F 392 (399)
T PRK13289 380 L---GVPEERIHYEFF 392 (399)
T ss_pred c---CCCHHHeeeecc
Confidence 4 444556777877
No 34
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.92 E-value=5.2e-24 Score=238.04 Aligned_cols=224 Identities=19% Similarity=0.347 Sum_probs=165.5
Q ss_pred eeeeEEEEEEeeCCCEEEEEEecC---CCcccCCCcEEEEECCCCCCcccccceeecCCC-CCeEEEEEEec--CCCcHH
Q 002830 549 HFSAKDLKVSVLPGNVLSIVMSKP---NGFRYRSGQYIFLQCPTISSFEWHPFSITSAPG-DDHLSVHIRIV--GDWTHE 622 (875)
Q Consensus 549 ~~~~~i~~v~~l~~~vl~L~~~~p---~~~~ykpGQyvfL~~p~is~~e~HPFTItSaP~-dd~lsl~IR~~--G~wT~~ 622 (875)
...++|++++.+.+++..|++..| +.+.|+||||+.|.+|.. -.+|||||+|.|. ++.+.|+||.. |..|+.
T Consensus 106 ~~~~~V~~i~~~s~di~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~--~~~R~ySias~p~~~~~l~~~ik~~~~G~~s~~ 183 (340)
T PRK11872 106 KISGVVTAVELVSETTAILHLDASAHGRQLDFLPGQYARLQIPGT--DDWRSYSFANRPNATNQLQFLIRLLPDGVMSNY 183 (340)
T ss_pred eeeEEEEEEEecCCCeEEEEEEcCCCCCccCcCCCCEEEEEeCCC--CceeecccCCCCCCCCeEEEEEEECCCCcchhh
Confidence 356789999999999999999876 467899999999999853 3589999999996 57899999986 446777
Q ss_pred HHHHhhhcccccccCCccccccCCCCCCCCCEEEEECcCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhcc
Q 002830 623 LKQVFTEDKDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAAAQDYSNYDVLLLVGLGIGATPFISILRDLLNNTREELM 702 (875)
Q Consensus 623 L~~~~~~~~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~~~~~~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~ 702 (875)
|.+.+ .+| ..|.|+||||.+..+ ...+++||||||+||||++|++++++...
T Consensus 184 L~~~l--------~~G--------------~~v~i~gP~G~f~l~-~~~~~~vliagGtGiaP~~s~l~~~~~~~----- 235 (340)
T PRK11872 184 LRERC--------QVG--------------DEILFEAPLGAFYLR-EVERPLVFVAGGTGLSAFLGMLDELAEQG----- 235 (340)
T ss_pred HhhCC--------CCC--------------CEEEEEcCcceeEeC-CCCCcEEEEeCCcCccHHHHHHHHHHHcC-----
Confidence 76432 334 789999999998653 33478999999999999999999987541
Q ss_pred ccCCCcccccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCchhhHHHHHHHHHhhcCCCcEEEEEEeccc
Q 002830 703 DSNTDSSRSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPGSFEWFKGVMDQVAEMDLKGQIELHNYLTSV 782 (875)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~eWf~~~L~el~e~~~~~~iev~~ylT~~ 782 (875)
..++++++|++|+++++ .|.+.|.++++.. .+++++..+++.
T Consensus 236 -----------------------------------~~~~v~l~~g~r~~~dl-~~~~el~~~~~~~--~~~~~~~~~s~~ 277 (340)
T PRK11872 236 -----------------------------------CSPPVHLYYGVRHAADL-CELQRLAAYAERL--PNFRYHPVVSKA 277 (340)
T ss_pred -----------------------------------CCCcEEEEEecCChHHh-ccHHHHHHHHHHC--CCcEEEEEEeCC
Confidence 13679999999999997 5788888877542 357777776643
Q ss_pred ccCCChhhHHHHHHHhhhcccCCcccccCCeeeeecCCCCHHHHHHHHHhhCCCCeEEEEEeCchHHHHHHHHHHHhhcc
Q 002830 783 YEEGDARSTLITMVQALNHAKHGVDILSGTRVRTHFARPNWKEVFSRVATKHPNATIGVFYCGMPVLAKELKKLSHELTH 862 (875)
Q Consensus 783 ~~~~d~rs~l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~~~v~~~~~~~~~~~~v~Vf~CGPp~l~~~lr~~~~~~~~ 862 (875)
.+.. .| ..|+.. +.+.+.. .......||+||||.|++.+++.+.+.
T Consensus 278 ~~~~-----------------------~g-----~~g~v~--~~l~~~~--l~~~~~~vy~CGp~~mv~~~~~~L~~~-- 323 (340)
T PRK11872 278 SADW-----------------------QG-----KRGYIH--EHFDKAQ--LRDQAFDMYLCGPPPMVEAVKQWLDEQ-- 323 (340)
T ss_pred CCcC-----------------------CC-----ceeecc--HHHHHhh--cCcCCCEEEEeCCHHHHHHHHHHHHHc--
Confidence 1110 01 012221 1222110 111224699999999999999999874
Q ss_pred CCCCeEEEEEecC
Q 002830 863 RTSTRFEFHKEYF 875 (875)
Q Consensus 863 ~~~~~f~fhkE~F 875 (875)
|...-.+|.|.|
T Consensus 324 -Gv~~~~i~~E~F 335 (340)
T PRK11872 324 -ALENYRLYYEKF 335 (340)
T ss_pred -CCCHHHEEEeee
Confidence 556667888887
No 35
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=99.92 E-value=1.1e-24 Score=215.99 Aligned_cols=153 Identities=30% Similarity=0.592 Sum_probs=97.9
Q ss_pred CCeEEEEEcCcCHHHHHHHHHHHHHhhhhhccccCCCcccccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCC
Q 002830 671 YDVLLLVGLGIGATPFISILRDLLNNTREELMDSNTDSSRSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTRE 750 (875)
Q Consensus 671 yd~vlLVagGiGITP~iSiLkdll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~ 750 (875)
|+++||||||+||||++|+++++++..++ +...+++|+|+|++|+
T Consensus 1 y~~vvlvAGG~GIt~~l~~l~~l~~~~~~-----------------------------------~~~~~~~i~lvW~vR~ 45 (156)
T PF08030_consen 1 YDNVVLVAGGSGITPILPILRDLLQRQNR-----------------------------------GSSRTRRIKLVWVVRD 45 (156)
T ss_dssp SSEEEEEEEGGGHHHHHHHHHHHHHHHHT-----------------------------------T-----EEEEEEEES-
T ss_pred CCEEEEEecCcCHHHHHHHHHHHHHhhcc-----------------------------------ccccccceEEEEeeCc
Confidence 79999999999999999999999988652 1234799999999999
Q ss_pred CCchhhHHHHHHHHHhhcCCCcEEEEEEecccccCCChhhHHHHHHHh--hhcccCCcccccCCe-eeeecCCCCHHHHH
Q 002830 751 PGSFEWFKGVMDQVAEMDLKGQIELHNYLTSVYEEGDARSTLITMVQA--LNHAKHGVDILSGTR-VRTHFARPNWKEVF 827 (875)
Q Consensus 751 ~~s~eWf~~~L~el~e~~~~~~iev~~ylT~~~~~~d~rs~l~~m~q~--l~~~k~g~divsg~r-v~~~~gRPd~~~v~ 827 (875)
.++++||.+.|+++.+.+....+++++|+|+....++..+....+... ......++|..+..+ +.++.||||+++++
T Consensus 46 ~~~l~w~~~~l~~l~~~~~~~~~~~~iyvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~s~~~~~~~~~gRP~~~~~~ 125 (156)
T PF08030_consen 46 ADELEWFSPELNELLELDRLGNVEVHIYVTRESSAPSNSDSSDSSSDGENSSSESSNVDSVSPTSNISVHYGRPDLDEIL 125 (156)
T ss_dssp TTTTHHHHHHHHHHHHHHHHTSEEEEEEETT-------------------------------------EEES---HHHHH
T ss_pred hhhhhhhhHHHHHHHHHhccccceEEEEEcCCcccccchhhhhcccccccccccccCCcccCCCcccceecCCCCHHHHH
Confidence 999999999999988765446799999999977665443332222111 112234567777765 88999999999999
Q ss_pred HHHHhhCCCCeEEEEEeCchHHHHHHHHHHH
Q 002830 828 SRVATKHPNATIGVFYCGMPVLAKELKKLSH 858 (875)
Q Consensus 828 ~~~~~~~~~~~v~Vf~CGPp~l~~~lr~~~~ 858 (875)
++........+++|++|||++|+++++++|+
T Consensus 126 ~~~~~~~~~~~~~V~~CGP~~m~~~vr~~v~ 156 (156)
T PF08030_consen 126 SEVASQQSSGRVAVFVCGPPSMVDDVRNAVN 156 (156)
T ss_dssp HHHHHHSTT-EEEEEEES-HHHHHHHHHHH-
T ss_pred HHHHHhCCCCcEEEEEcCcHHHHHHHHHHhC
Confidence 9997777788999999999999999999874
No 36
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=99.92 E-value=1.9e-23 Score=220.50 Aligned_cols=216 Identities=18% Similarity=0.290 Sum_probs=160.4
Q ss_pred EEEEEEeeCCCEEEEEEecCC---CcccCCCcEEEEECCCCCCcccccceeecCCCC-CeEEEEEEec--CCCcHHHHHH
Q 002830 553 KDLKVSVLPGNVLSIVMSKPN---GFRYRSGQYIFLQCPTISSFEWHPFSITSAPGD-DHLSVHIRIV--GDWTHELKQV 626 (875)
Q Consensus 553 ~i~~v~~l~~~vl~L~~~~p~---~~~ykpGQyvfL~~p~is~~e~HPFTItSaP~d-d~lsl~IR~~--G~wT~~L~~~ 626 (875)
+|.+++.+++++..++++.|. .+.|+||||+.|.+|..+....|||||+|.|.+ +.+.|+||.. |..|+.|.++
T Consensus 2 ~v~~~~~~~~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~~~~~~R~ysi~s~~~~~~~~~~~v~~~~~G~~s~~l~~~ 81 (234)
T cd06183 2 KLVSKEDISHDTRIFRFELPSPDQVLGLPVGQHVELKAPDDGEQVVRPYTPISPDDDKGYFDLLIKIYPGGKMSQYLHSL 81 (234)
T ss_pred EeEEeEecCCCEEEEEEECCCCCCcCCCCcccEEEEEecCCCcccccccccccCCCcCCEEEEEEEECCCCcchhHHhcC
Confidence 466778899999999998875 378999999999999766678999999999864 5799999986 7778777642
Q ss_pred hhhcccccccCCccccccCCCCCCCCCEEEEECcCCCCCCCCCC-CCeEEEEEcCcCHHHHHHHHHHHHHhhhhhccccC
Q 002830 627 FTEDKDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAAAQDYSN-YDVLLLVGLGIGATPFISILRDLLNNTREELMDSN 705 (875)
Q Consensus 627 ~~~~~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~~~~~~~-yd~vlLVagGiGITP~iSiLkdll~~~~~~~~~~~ 705 (875)
.+| ..+.|.||||.+..+... ++++||||||+||||++|++++++.+.
T Consensus 82 ---------~~G--------------~~v~i~gP~G~~~~~~~~~~~~~vliagGtGiaP~~~~l~~~~~~~-------- 130 (234)
T cd06183 82 ---------KPG--------------DTVEIRGPFGKFEYKPNGKVKHIGMIAGGTGITPMLQLIRAILKDP-------- 130 (234)
T ss_pred ---------CCC--------------CEEEEECCccceeecCCCCccEEEEEcCCcchhHHHHHHHHHHhCc--------
Confidence 233 789999999997543333 379999999999999999999987542
Q ss_pred CCcccccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCchhhHHHHHHHHHhhcCCCcEEEEEEecccccC
Q 002830 706 TDSSRSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPGSFEWFKGVMDQVAEMDLKGQIELHNYLTSVYEE 785 (875)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~eWf~~~L~el~e~~~~~~iev~~ylT~~~~~ 785 (875)
...++|+++|.+|+.++. +|.+.++++++. ....++++.++|+....
T Consensus 131 -------------------------------~~~~~i~l~~~~r~~~~~-~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~ 177 (234)
T cd06183 131 -------------------------------EDKTKISLLYANRTEEDI-LLREELDELAKK-HPDRFKVHYVLSRPPEG 177 (234)
T ss_pred -------------------------------CcCcEEEEEEecCCHHHh-hhHHHHHHHHHh-CcccEEEEEEEcCCCcC
Confidence 115789999999999887 888888888754 23468888777642111
Q ss_pred CChhhHHHHHHHhhhcccCCcccccCCeeeeecCCCCHHHHHHHHHhhCCCCeEEEEEeCchHHHH-HHHHHHHhhc
Q 002830 786 GDARSTLITMVQALNHAKHGVDILSGTRVRTHFARPNWKEVFSRVATKHPNATIGVFYCGMPVLAK-ELKKLSHELT 861 (875)
Q Consensus 786 ~d~rs~l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~~~v~~~~~~~~~~~~v~Vf~CGPp~l~~-~lr~~~~~~~ 861 (875)
. ..+.||.+-. +++......+.....||+|||++|++ .+++.+.+.+
T Consensus 178 ~----------------------------~~~~g~~~~~-~l~~~~~~~~~~~~~~~icGp~~~~~~~~~~~l~~~G 225 (234)
T cd06183 178 W----------------------------KGGVGFITKE-MIKEHLPPPPSEDTLVLVCGPPPMIEGAVKGLLKELG 225 (234)
T ss_pred C----------------------------ccccceECHH-HHHHhCCCCCCCCeEEEEECCHHHHHHHHHHHHHHcC
Confidence 0 0122454432 33332211012346799999999999 9999998753
No 37
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=99.92 E-value=1.1e-23 Score=225.98 Aligned_cols=206 Identities=22% Similarity=0.376 Sum_probs=150.8
Q ss_pred EEEEeeCCCEEEEEEecCC----CcccCCCcEEEEECCCCCCcccccceeecCCC-CCeEEEEEEecCCCcHHHHHHhhh
Q 002830 555 LKVSVLPGNVLSIVMSKPN----GFRYRSGQYIFLQCPTISSFEWHPFSITSAPG-DDHLSVHIRIVGDWTHELKQVFTE 629 (875)
Q Consensus 555 ~~v~~l~~~vl~L~~~~p~----~~~ykpGQyvfL~~p~is~~e~HPFTItSaP~-dd~lsl~IR~~G~wT~~L~~~~~~ 629 (875)
.+++.+++++..++++.+. .++|+||||++|.+|..+ .|||||+|+|. ++.++|+||..|.+|+.|.++
T Consensus 2 ~~i~~~t~~v~~~~l~~~~~~~~~~~~~pGQ~i~l~~~~~~---~~pySi~s~~~~~~~l~~~Ik~~G~~S~~L~~l--- 75 (253)
T cd06221 2 VEVVDETEDIKTFTLRLEDDDEELFTFKPGQFVMLSLPGVG---EAPISISSDPTRRGPLELTIRRVGRVTEALHEL--- 75 (253)
T ss_pred ceEEeccCCceEEEEEeCCCccccCCcCCCCEEEEEcCCCC---ccceEecCCCCCCCeEEEEEEeCChhhHHHHcC---
Confidence 4567788887777776544 378999999999998643 39999999997 679999999999999888643
Q ss_pred cccccccCCccccccCCCCCCCCCEEEEECcCCCCCC-CCCCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhccccCCCc
Q 002830 630 DKDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAAAQ-DYSNYDVLLLVGLGIGATPFISILRDLLNNTREELMDSNTDS 708 (875)
Q Consensus 630 ~~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~~~-~~~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~~~~~~~ 708 (875)
.+| .++.|.||||.... +...++++|+||||+||||++|++++++.+..
T Consensus 76 ------~~G--------------~~v~i~gP~G~~f~~~~~~~~~iv~IA~G~GitP~ls~l~~~~~~~~---------- 125 (253)
T cd06221 76 ------KPG--------------DTVGLRGPFGNGFPVEEMKGKDLLLVAGGLGLAPLRSLINYILDNRE---------- 125 (253)
T ss_pred ------CCC--------------CEEEEECCcCCCcccccccCCeEEEEccccchhHHHHHHHHHHhccc----------
Confidence 233 78999999999542 22257899999999999999999999986521
Q ss_pred ccccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCchhhHHHHHHHHHhhcCCCcEEEEEEecccccCCCh
Q 002830 709 SRSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPGSFEWFKGVMDQVAEMDLKGQIELHNYLTSVYEEGDA 788 (875)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~eWf~~~L~el~e~~~~~~iev~~ylT~~~~~~d~ 788 (875)
..++++|+|++|+.+++ ++.+.|+++++. ..+.++.++++..+..+
T Consensus 126 -----------------------------~~~~i~Li~~~r~~~~~-~~~~~L~~l~~~---~~~~~~~~~s~~~~~~~- 171 (253)
T cd06221 126 -----------------------------DYGKVTLLYGARTPEDL-LFKEELKEWAKR---SDVEVILTVDRAEEGWT- 171 (253)
T ss_pred -----------------------------cCCcEEEEEecCChHHc-chHHHHHHHHhc---CCeEEEEEeCCCCCCcc-
Confidence 14789999999999998 688888887753 34777766664211100
Q ss_pred hhHHHHHHHhhhcccCCcccccCCeeeeecCCCCHHHHHHHHHhhCCCCeEEEEEeCchHHHHHHHHHHHhhc
Q 002830 789 RSTLITMVQALNHAKHGVDILSGTRVRTHFARPNWKEVFSRVATKHPNATIGVFYCGMPVLAKELKKLSHELT 861 (875)
Q Consensus 789 rs~l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~~~v~~~~~~~~~~~~v~Vf~CGPp~l~~~lr~~~~~~~ 861 (875)
+ ..|+.+ +.+.+.... .....||+|||+.|++.+++.+.+.+
T Consensus 172 ----------------------~-----~~g~v~--~~l~~~~~~--~~~~~vyicGp~~mv~~~~~~L~~~G 213 (253)
T cd06221 172 ----------------------G-----NVGLVT--DLLPELTLD--PDNTVAIVCGPPIMMRFVAKELLKLG 213 (253)
T ss_pred ----------------------C-----Cccccc--hhHHhcCCC--cCCcEEEEECCHHHHHHHHHHHHHcC
Confidence 0 012221 223222211 12357999999999999999998754
No 38
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=99.92 E-value=2.1e-23 Score=223.42 Aligned_cols=210 Identities=20% Similarity=0.353 Sum_probs=154.4
Q ss_pred eeeeEEEEEEeeCCCEEEEEEecCCCcccCCCcEEEEECCCCCCcccccceeecCCCCCeEEEEEEecCCCcHHHHHHhh
Q 002830 549 HFSAKDLKVSVLPGNVLSIVMSKPNGFRYRSGQYIFLQCPTISSFEWHPFSITSAPGDDHLSVHIRIVGDWTHELKQVFT 628 (875)
Q Consensus 549 ~~~~~i~~v~~l~~~vl~L~~~~p~~~~ykpGQyvfL~~p~is~~e~HPFTItSaP~dd~lsl~IR~~G~wT~~L~~~~~ 628 (875)
++.++|++++.+++++.++++..|..+.|+||||+.|.+|...+..+|||||+|.| ++++.|+||..|.+|+.|.++
T Consensus 4 ~~~~~V~~~~~~t~d~~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~-~~~l~l~Vk~~G~~t~~l~~l-- 80 (250)
T PRK00054 4 PENMKIVENKEIAPNIYTLVLDGEKVFDMKPGQFVMVWVPGVEPLLERPISISDID-KNEITILYRKVGEGTKKLSKL-- 80 (250)
T ss_pred ceEEEEEEEEEecCCeEEEEEeCccccCCCCCcEEEEEeCCCCCcCceeeEEeeeC-CCEEEEEEEEcChHHHHHhcC--
Confidence 35578889999999999999998777899999999999997766789999999999 889999999999999877542
Q ss_pred hcccccccCCccccccCCCCCCCCCEEEEECcCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhccccCCCc
Q 002830 629 EDKDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAAAQDYSNYDVLLLVGLGIGATPFISILRDLLNNTREELMDSNTDS 708 (875)
Q Consensus 629 ~~~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~~~~~~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~~~~~~~ 708 (875)
.+| .++.|.||||.+...-...+++||||||+||||++|+++++...
T Consensus 81 -------~~G--------------~~v~i~gP~G~~f~l~~~~~~~vlIagG~GiaP~~s~l~~~~~~------------ 127 (250)
T PRK00054 81 -------KEG--------------DELDIRGPLGNGFDLEEIGGKVLLVGGGIGVAPLYELAKELKKK------------ 127 (250)
T ss_pred -------CCC--------------CEEEEEcccCCCCCCCCCCCeEEEEeccccHHHHHHHHHHHHHc------------
Confidence 234 78999999998532223668999999999999999999998643
Q ss_pred ccccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCchhhHHHHHHHHHhhcCCCcEEEEEEecccccCCCh
Q 002830 709 SRSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPGSFEWFKGVMDQVAEMDLKGQIELHNYLTSVYEEGDA 788 (875)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~eWf~~~L~el~e~~~~~~iev~~ylT~~~~~~d~ 788 (875)
.++++++|.+|+.+++ +|.+.+.++++ + +++. +++..
T Consensus 128 ------------------------------~~~v~l~~~~r~~~d~-~~~~el~~~~~------~----~~~~--~~~~~ 164 (250)
T PRK00054 128 ------------------------------GVEVTTVLGARTKDEV-IFEEEFAKVGD------V----YVTT--DDGSY 164 (250)
T ss_pred ------------------------------CCcEEEEEEcCCHHHh-hhHHHHHhcCC------E----EEEe--cCCCC
Confidence 2468999999999987 57666655221 1 2221 11000
Q ss_pred hhHHHHHHHhhhcccCCcccccCCeeeeecCCCCHHHHHHHHHhhCCCCeEEEEEeCchHHHHHHHHHHHhhccCCCCeE
Q 002830 789 RSTLITMVQALNHAKHGVDILSGTRVRTHFARPNWKEVFSRVATKHPNATIGVFYCGMPVLAKELKKLSHELTHRTSTRF 868 (875)
Q Consensus 789 rs~l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~~~v~~~~~~~~~~~~v~Vf~CGPp~l~~~lr~~~~~~~~~~~~~f 868 (875)
| .+....+++.+.. .. ...||+|||+.|++.+++.+.+.+ .+.
T Consensus 165 ----------------------~-------~~g~v~~~l~~~~---~~-~~~vyvCGp~~m~~~v~~~l~~~G----v~~ 207 (250)
T PRK00054 165 ----------------------G-------FKGFVTDVLDELD---SE-YDAIYSCGPEIMMKKVVEILKEKK----VPA 207 (250)
T ss_pred ----------------------C-------cccchhHhHhhhc---cC-CCEEEEeCCHHHHHHHHHHHHHcC----CcE
Confidence 0 0111223333322 11 126999999999999999998742 245
Q ss_pred EEEEec
Q 002830 869 EFHKEY 874 (875)
Q Consensus 869 ~fhkE~ 874 (875)
.+..|.
T Consensus 208 ~~~~e~ 213 (250)
T PRK00054 208 YVSLER 213 (250)
T ss_pred EEEEcc
Confidence 555554
No 39
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=99.92 E-value=3e-23 Score=222.03 Aligned_cols=217 Identities=17% Similarity=0.254 Sum_probs=155.6
Q ss_pred eeeeEEEEEEeeCCCEEEEEEecCCCcccCCCcEEEEECCCCCCcccccceeecCCCCCeEEEEEEec--CCCcHHHHHH
Q 002830 549 HFSAKDLKVSVLPGNVLSIVMSKPNGFRYRSGQYIFLQCPTISSFEWHPFSITSAPGDDHLSVHIRIV--GDWTHELKQV 626 (875)
Q Consensus 549 ~~~~~i~~v~~l~~~vl~L~~~~p~~~~ykpGQyvfL~~p~is~~e~HPFTItSaP~dd~lsl~IR~~--G~wT~~L~~~ 626 (875)
++.++|++++.+.+++.++++..|. ..|+||||+.|.++..+...+|||||+|.|+++.++++||.. |..|+.|.++
T Consensus 4 ~~~~~V~~i~~~t~~v~~l~l~~~~-~~~~pGQfv~l~~~~~g~~~~R~ySias~p~~~~l~~~ik~~~~G~~S~~L~~l 82 (248)
T PRK10926 4 WVTGKVTKVQNWTDALFSLTVHAPV-DPFTAGQFTKLGLEIDGERVQRAYSYVNAPDNPDLEFYLVTVPEGKLSPRLAAL 82 (248)
T ss_pred cEEEEEEEEEEcCCCeEEEEEeCCC-CCCCCCCEEEEEEecCCcEEEeeecccCCCCCCeEEEEEEEeCCCCcChHHHhC
Confidence 5678899999999999999998763 379999999999864344467999999999888999999997 8889888642
Q ss_pred hhhcccccccCCccccccCCCCCCCCCEEEEECcCCCC-CCCCC-CCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhcccc
Q 002830 627 FTEDKDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAA-AQDYS-NYDVLLLVGLGIGATPFISILRDLLNNTREELMDS 704 (875)
Q Consensus 627 ~~~~~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~-~~~~~-~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~~~ 704 (875)
.+| ..|.|.||+|.. ..+.. ..+++|||||||||||++|+++++....
T Consensus 83 ---------~~G--------------d~v~i~gp~~g~f~l~~~~~~~~~vlIagGtGItP~~s~l~~~~~~~------- 132 (248)
T PRK10926 83 ---------KPG--------------DEVQVVSEAAGFFVLDEVPDCETLWMLATGTAIGPYLSILQEGKDLE------- 132 (248)
T ss_pred ---------CCC--------------CEEEEecCCCcceEccCCCCCCeEEEEEeeeeHHHHHHHHHhhHhhC-------
Confidence 344 789999998543 22222 3478999999999999999999975331
Q ss_pred CCCcccccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCchhhHHHHHHHHHhhcCCCcEEEEEEeccccc
Q 002830 705 NTDSSRSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPGSFEWFKGVMDQVAEMDLKGQIELHNYLTSVYE 784 (875)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~eWf~~~L~el~e~~~~~~iev~~ylT~~~~ 784 (875)
..++++++|++|+.+++ .|.+.|+++++. ....+.++..+++...
T Consensus 133 ---------------------------------~~~~v~l~~g~r~~~d~-~~~~el~~l~~~-~~~~~~v~~~~s~~~~ 177 (248)
T PRK10926 133 ---------------------------------RFKNLVLVHAARYAADL-SYLPLMQELEQR-YEGKLRIQTVVSRETA 177 (248)
T ss_pred ---------------------------------CCCcEEEEEeCCcHHHH-HHHHHHHHHHHh-CcCCEEEEEEECCCCC
Confidence 14679999999999887 688888888754 2235777777765211
Q ss_pred CCChhhHHHHHHHhhhcccCCcccccCCeeeeecCCCCH---HHHHHHHHhh-CCCCeEEEEEeCchHHHHHHHHHHHhh
Q 002830 785 EGDARSTLITMVQALNHAKHGVDILSGTRVRTHFARPNW---KEVFSRVATK-HPNATIGVFYCGMPVLAKELKKLSHEL 860 (875)
Q Consensus 785 ~~d~rs~l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~---~~v~~~~~~~-~~~~~v~Vf~CGPp~l~~~lr~~~~~~ 860 (875)
+. ...||.+- +..+.+.... .......||+|||+.|++.+++.+.+.
T Consensus 178 --~~---------------------------~~~G~v~~~i~~~~l~~~~~~~~~~~~~~vy~CGp~~Mv~~~~~~l~~~ 228 (248)
T PRK10926 178 --PG---------------------------SLTGRVPALIESGELEAAVGLPMDAETSHVMLCGNPQMVRDTQQLLKET 228 (248)
T ss_pred --CC---------------------------CcCCccchhhhcchHHHHhcCCCCccCCEEEEECCHHHHHHHHHHHHHh
Confidence 00 00122210 0011111111 111235699999999999999998763
No 40
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=99.91 E-value=3.6e-23 Score=226.26 Aligned_cols=224 Identities=22% Similarity=0.263 Sum_probs=154.4
Q ss_pred eeeeEEEEEEeeCCCEE--EEEEecCC---CcccCCCcEEEEECCCCCCcccccceeecCCC-CCeEEEEEEecCCCcHH
Q 002830 549 HFSAKDLKVSVLPGNVL--SIVMSKPN---GFRYRSGQYIFLQCPTISSFEWHPFSITSAPG-DDHLSVHIRIVGDWTHE 622 (875)
Q Consensus 549 ~~~~~i~~v~~l~~~vl--~L~~~~p~---~~~ykpGQyvfL~~p~is~~e~HPFTItSaP~-dd~lsl~IR~~G~wT~~ 622 (875)
++.++|++++.+++++. .|.+..|. .+.|+||||+.|++|... .|||||+|+|. +++++|+||..|.+|+.
T Consensus 5 ~~~~~V~~~~~~t~d~~~~~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~---~~pySias~p~~~~~l~l~Ik~~G~~S~~ 81 (289)
T PRK08345 5 LHDAKILEVYDLTEREKLFLLRFEDPELAESFTFKPGQFVQVTIPGVG---EVPISICSSPTRKGFFELCIRRAGRVTTV 81 (289)
T ss_pred ceeEEEEEEEecCCCCCEEEEEEeCccccCCCCcCCCCEEEEEcCCCC---ceeeEecCCCCCCCEEEEEEEeCChHHHH
Confidence 35678889999988844 45544442 477999999999998643 48999999986 46899999999999998
Q ss_pred HHHHhhhcccccccCCccccccCCCCCCCCCEEEEECcCCCCC-CCCCCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhc
Q 002830 623 LKQVFTEDKDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAAA-QDYSNYDVLLLVGLGIGATPFISILRDLLNNTREEL 701 (875)
Q Consensus 623 L~~~~~~~~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~~-~~~~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~ 701 (875)
|.++ .+| ..|.|+||||.+. .+-...+++|||||||||||++|++++++.+.
T Consensus 82 L~~l---------~~G--------------d~v~v~gP~G~~f~~~~~~~~~~llIAgGtGIaP~~s~l~~~l~~~---- 134 (289)
T PRK08345 82 IHRL---------KEG--------------DIVGVRGPYGNGFPVDEMEGMDLLLIAGGLGMAPLRSVLLYAMDNR---- 134 (289)
T ss_pred HHhC---------CCC--------------CEEEEeCCCCCCCCcccccCceEEEEecccchhHHHHHHHHHHhcC----
Confidence 8643 334 7899999999843 22223468999999999999999999987541
Q ss_pred cccCCCcccccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCchhhHHHHHHHHHhhcCCCcEEEEEEecc
Q 002830 702 MDSNTDSSRSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPGSFEWFKGVMDQVAEMDLKGQIELHNYLTS 781 (875)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~eWf~~~L~el~e~~~~~~iev~~ylT~ 781 (875)
...++++++|++|+.+++ +|.+++.++++. ...++++.++++
T Consensus 135 -----------------------------------~~~~~v~l~~~~r~~~d~-~~~deL~~l~~~--~~~~~~~~~~s~ 176 (289)
T PRK08345 135 -----------------------------------WKYGNITLIYGAKYYEDL-LFYDELIKDLAE--AENVKIIQSVTR 176 (289)
T ss_pred -----------------------------------CCCCcEEEEEecCCHHHh-hHHHHHHHHHhc--CCCEEEEEEecC
Confidence 014689999999999998 688888888653 345888887775
Q ss_pred cccCCChhhHHHHHHHhhhcccCCcccccCCeeeeecCCCCHHHHHHHHHhhCCCCeEEEEEeCchHHHHHHHHHHHhhc
Q 002830 782 VYEEGDARSTLITMVQALNHAKHGVDILSGTRVRTHFARPNWKEVFSRVATKHPNATIGVFYCGMPVLAKELKKLSHELT 861 (875)
Q Consensus 782 ~~~~~d~rs~l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~~~v~~~~~~~~~~~~v~Vf~CGPp~l~~~lr~~~~~~~ 861 (875)
.. +.+... + ...|..-+...|+. .+++.+.. .+..+..||+|||++|++.+++.+.+..
T Consensus 177 ~~-~~~~~~--------------~--~~~~~~~~~~~g~v--~~~~~~~~--~~~~~~~vyiCGP~~m~~~v~~~L~~~G 235 (289)
T PRK08345 177 DP-EWPGCH--------------G--LPQGFIERVCKGVV--TDLFREAN--TDPKNTYAAICGPPVMYKFVFKELINRG 235 (289)
T ss_pred CC-CCcCcc--------------c--cccccccccccCch--hhhhhhcC--CCccccEEEEECCHHHHHHHHHHHHHcC
Confidence 21 111000 0 00000000011221 12222111 1123357999999999999999998754
No 41
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.91 E-value=3.2e-23 Score=221.58 Aligned_cols=209 Identities=20% Similarity=0.335 Sum_probs=153.3
Q ss_pred EEEEeeCCCEEEEEEecCC-CcccCCCcEEEEECCC-CCCcccccceeecCC-CCCeEEEEEEecCCCcHHHHHHhhhcc
Q 002830 555 LKVSVLPGNVLSIVMSKPN-GFRYRSGQYIFLQCPT-ISSFEWHPFSITSAP-GDDHLSVHIRIVGDWTHELKQVFTEDK 631 (875)
Q Consensus 555 ~~v~~l~~~vl~L~~~~p~-~~~ykpGQyvfL~~p~-is~~e~HPFTItSaP-~dd~lsl~IR~~G~wT~~L~~~~~~~~ 631 (875)
++++.+.+++.+|+++.|. ...|+||||+.|.+|. ..++.+|||||+|.| +++.++|+||..|++|+.|.++
T Consensus 2 ~~~~~~t~~v~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~~~~l~l~v~~~G~~s~~l~~l----- 76 (246)
T cd06218 2 LSNREIADDIYRLVLEAPEIAAAAKPGQFVMLRVPDGSDPLLRRPISIHDVDPEEGTITLLYKVVGKGTRLLSEL----- 76 (246)
T ss_pred cceeEecCCeEEEEEeCcchhccCCCCcEEEEEeCCCCCCcCCCceEeeeccCCCCEEEEEEEEECcchHHHhcC-----
Confidence 4567889999999999887 6789999999999986 456789999999998 4789999999999999877542
Q ss_pred cccccCCccccccCCCCCCCCCEEEEECcCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhccccCCCcccc
Q 002830 632 DSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAAAQDYSNYDVLLLVGLGIGATPFISILRDLLNNTREELMDSNTDSSRS 711 (875)
Q Consensus 632 ~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~~~~~~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~~~~~~~~~~ 711 (875)
.+| .+|.|.||||.+...-.+++.+||||||+||||++|+++++...
T Consensus 77 ----~~G--------------d~v~i~gP~G~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~--------------- 123 (246)
T cd06218 77 ----KAG--------------DELDVLGPLGNGFDLPDDDGKVLLVGGGIGIAPLLFLAKQLAER--------------- 123 (246)
T ss_pred ----CCC--------------CEEEEEecCCCCcCCCCCCCcEEEEecccCHHHHHHHHHHHHhc---------------
Confidence 234 78999999997433223578999999999999999999998642
Q ss_pred cccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCchhhHHHHHHHHHhhcCCCcEEEEEEecccccCCChhhH
Q 002830 712 ASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPGSFEWFKGVMDQVAEMDLKGQIELHNYLTSVYEEGDARST 791 (875)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~eWf~~~L~el~e~~~~~~iev~~ylT~~~~~~d~rs~ 791 (875)
.++++++|.+|+.+++ .|.+.|+++.. +++. .+. ++.
T Consensus 124 ---------------------------~~~v~l~~~~r~~~d~-~~~~eL~~l~~-------~~~~-~~~---~~~---- 160 (246)
T cd06218 124 ---------------------------GIKVTVLLGFRSADDL-FLVEEFEALGA-------EVYV-ATD---DGS---- 160 (246)
T ss_pred ---------------------------CCceEEEEEccchhhh-hhHHHHHhhCC-------cEEE-EcC---CCC----
Confidence 2579999999999986 57776666531 1221 121 100
Q ss_pred HHHHHHhhhcccCCcccccCCeeeeecCCCCHHHHHHHHHhhCCCCeEEEEEeCchHHHHHHHHHHHhhccCCCCeEEEE
Q 002830 792 LITMVQALNHAKHGVDILSGTRVRTHFARPNWKEVFSRVATKHPNATIGVFYCGMPVLAKELKKLSHELTHRTSTRFEFH 871 (875)
Q Consensus 792 l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~~~v~~~~~~~~~~~~v~Vf~CGPp~l~~~lr~~~~~~~~~~~~~f~fh 871 (875)
.| .+....+.+.+..... ....||+|||+.|++.+++.+.+.+ ....++
T Consensus 161 ------------------~~-------~~g~v~~~l~~~~~~~--~~~~vyiCGp~~mv~~~~~~L~~~G----v~~~~~ 209 (246)
T cd06218 161 ------------------AG-------TKGFVTDLLKELLAEA--RPDVVYACGPEPMLKAVAELAAERG----VPCQVS 209 (246)
T ss_pred ------------------CC-------cceehHHHHHHHhhcc--CCCEEEEECCHHHHHHHHHHHHhcC----CCEEEE
Confidence 00 0122333444433221 2358999999999999999998753 345677
Q ss_pred EecC
Q 002830 872 KEYF 875 (875)
Q Consensus 872 kE~F 875 (875)
-|++
T Consensus 210 ~~~~ 213 (246)
T cd06218 210 LEER 213 (246)
T ss_pred eccc
Confidence 6654
No 42
>PRK05713 hypothetical protein; Provisional
Probab=99.91 E-value=4.3e-23 Score=228.13 Aligned_cols=212 Identities=21% Similarity=0.334 Sum_probs=157.5
Q ss_pred eeeEEEEEEeeCCCEEEEEEecCCCcccCCCcEEEEECCCCCCcccccceeecCCC-CCeEEEEEEe--cCCCcHHHHHH
Q 002830 550 FSAKDLKVSVLPGNVLSIVMSKPNGFRYRSGQYIFLQCPTISSFEWHPFSITSAPG-DDHLSVHIRI--VGDWTHELKQV 626 (875)
Q Consensus 550 ~~~~i~~v~~l~~~vl~L~~~~p~~~~ykpGQyvfL~~p~is~~e~HPFTItSaP~-dd~lsl~IR~--~G~wT~~L~~~ 626 (875)
.+++|++++.+.+++..|+++.+..+.|+||||+.|.++. -.+|||||+|.|. +++++|+||. .|.+|..|.++
T Consensus 92 ~~~~V~~~~~~t~dv~~l~l~~~~~~~~~~GQfv~l~~~~---~~~R~ySias~p~~~~~l~~~I~~~~~G~~s~~l~~l 168 (312)
T PRK05713 92 LPARVVALDWLGGDVLRLRLEPERPLRYRAGQHLVLWTAG---GVARPYSLASLPGEDPFLEFHIDCSRPGAFCDAARQL 168 (312)
T ss_pred CCeEEEEEecCCCCEEEEEEccCCcCCcCCCCEEEEecCC---CcccccccCcCCCCCCeEEEEEEEcCCCccchhhhcC
Confidence 4678889999999999999987778899999999999864 2589999999996 5789999985 46788776432
Q ss_pred hhhcccccccCCccccccCCCCCCCCCEEEEECcCCCCCC-CCC-CCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhcccc
Q 002830 627 FTEDKDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAAAQ-DYS-NYDVLLLVGLGIGATPFISILRDLLNNTREELMDS 704 (875)
Q Consensus 627 ~~~~~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~~~-~~~-~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~~~ 704 (875)
.+| ..|.|.||+|.... +.. ..+++|||||||||||++|++++++...
T Consensus 169 ---------~~G--------------d~v~l~~p~gg~~~~~~~~~~~~~vlIAgGtGiaP~~s~l~~~~~~~------- 218 (312)
T PRK05713 169 ---------QVG--------------DLLRLGELRGGALHYDPDWQERPLWLLAAGTGLAPLWGILREALRQG------- 218 (312)
T ss_pred ---------CCC--------------CEEEEccCCCCceEecCCCCCCcEEEEecCcChhHHHHHHHHHHhcC-------
Confidence 344 78999999985321 111 3478999999999999999999987541
Q ss_pred CCCcccccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCchhhHHHHHHHHHhhcCCCcEEEEEEeccccc
Q 002830 705 NTDSSRSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPGSFEWFKGVMDQVAEMDLKGQIELHNYLTSVYE 784 (875)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~eWf~~~L~el~e~~~~~~iev~~ylT~~~~ 784 (875)
..++++++|++|+.+++ +|.+.|+++++.. .+++++..++..
T Consensus 219 ---------------------------------~~~~v~l~~g~r~~~d~-~~~~el~~l~~~~--~~~~~~~~~~~~-- 260 (312)
T PRK05713 219 ---------------------------------HQGPIRLLHLARDSAGH-YLAEPLAALAGRH--PQLSVELVTAAQ-- 260 (312)
T ss_pred ---------------------------------CCCcEEEEEEcCchHHh-hhHHHHHHHHHHC--CCcEEEEEECcc--
Confidence 14679999999999998 6888888887542 346665443310
Q ss_pred CCChhhHHHHHHHhhhcccCCcccccCCeeeeecCCCCHHHHHHHHHhhCCCCeEEEEEeCchHHHHHHHHHHHhhccCC
Q 002830 785 EGDARSTLITMVQALNHAKHGVDILSGTRVRTHFARPNWKEVFSRVATKHPNATIGVFYCGMPVLAKELKKLSHELTHRT 864 (875)
Q Consensus 785 ~~d~rs~l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~~~v~~~~~~~~~~~~v~Vf~CGPp~l~~~lr~~~~~~~~~~ 864 (875)
..+++.++.. . .....||+|||+.|++.+++.+.+. +
T Consensus 261 --------------------------------------~~~~l~~~~~-~-~~~~~vyiCGp~~mv~~~~~~L~~~---G 297 (312)
T PRK05713 261 --------------------------------------LPAALAELRL-V-SRQTMALLCGSPASVERFARRLYLA---G 297 (312)
T ss_pred --------------------------------------hhhhhhhccC-C-CCCeEEEEeCCHHHHHHHHHHHHHc---C
Confidence 0011111100 1 1235699999999999999999864 5
Q ss_pred CCeEEEEEecC
Q 002830 865 STRFEFHKEYF 875 (875)
Q Consensus 865 ~~~f~fhkE~F 875 (875)
...-.+|.|.|
T Consensus 298 v~~~~i~~e~F 308 (312)
T PRK05713 298 LPRNQLLADVF 308 (312)
T ss_pred CCHHHeeeccc
Confidence 55666788877
No 43
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=99.91 E-value=9.4e-23 Score=212.26 Aligned_cols=202 Identities=19% Similarity=0.285 Sum_probs=151.2
Q ss_pred EEEeeCCCEEEEEEecCCCc---ccCCCcEEEEECCCCCCcccccceeecCCCC-CeEEEEEEecCC---CcHHHHHHhh
Q 002830 556 KVSVLPGNVLSIVMSKPNGF---RYRSGQYIFLQCPTISSFEWHPFSITSAPGD-DHLSVHIRIVGD---WTHELKQVFT 628 (875)
Q Consensus 556 ~v~~l~~~vl~L~~~~p~~~---~ykpGQyvfL~~p~is~~e~HPFTItSaP~d-d~lsl~IR~~G~---wT~~L~~~~~ 628 (875)
+++.+.+++.+++++.|... .|+||||+.|++|. -++|||||+|.|.+ +.+.|+||..++ .|..|.+.+
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~~~l~~~~---~~~r~ySi~s~~~~~~~l~~~v~~~~~g~~~s~~l~~~~- 77 (211)
T cd06185 2 RIRDEAPDIRSFELEAPDGAPLPAFEPGAHIDVHLPN---GLVRQYSLCGDPADRDRYRIAVLREPASRGGSRYMHELL- 77 (211)
T ss_pred ceEEcCCCeEEEEEEeCCCCcCCCCCCCceEEEEcCC---CCceeeeccCCCCCCCEEEEEEEeccCCCchHHHHHhcC-
Confidence 45678899999999988753 89999999999986 36799999999975 899999998753 566665432
Q ss_pred hcccccccCCccccccCCCCCCCCCEEEEECcCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhccccCCCc
Q 002830 629 EDKDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAAAQDYSNYDVLLLVGLGIGATPFISILRDLLNNTREELMDSNTDS 708 (875)
Q Consensus 629 ~~~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~~~~~~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~~~~~~~ 708 (875)
++| .++.|.||||.+..+ ...+++||||||+||||++|+++++...
T Consensus 78 -------~~G--------------d~v~i~gP~g~f~~~-~~~~~~v~ia~GtGiap~~~il~~~~~~------------ 123 (211)
T cd06185 78 -------RVG--------------DELEVSAPRNLFPLD-EAARRHLLIAGGIGITPILSMARALAAR------------ 123 (211)
T ss_pred -------CCC--------------CEEEEcCCccCCcCC-CCCCcEEEEeccchHhHHHHHHHHHHhC------------
Confidence 233 789999999987543 2457899999999999999999987542
Q ss_pred ccccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCchhhHHHHHHHHHhhcCCCcEEEEEEecccccCCCh
Q 002830 709 SRSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPGSFEWFKGVMDQVAEMDLKGQIELHNYLTSVYEEGDA 788 (875)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~eWf~~~L~el~e~~~~~~iev~~ylT~~~~~~d~ 788 (875)
.++++++|.+|+.+++ .+.+.|++++ ... ++++.+..
T Consensus 124 ------------------------------~~~v~l~~~~r~~~~~-~~~~~l~~~~----~~~--~~~~~~~~------ 160 (211)
T cd06185 124 ------------------------------GADFELHYAGRSREDA-AFLDELAALP----GDR--VHLHFDDE------ 160 (211)
T ss_pred ------------------------------CCCEEEEEEeCCCcch-hHHHHHhhhc----CCc--EEEEECCC------
Confidence 2579999999999987 4666666655 122 33333310
Q ss_pred hhHHHHHHHhhhcccCCcccccCCeeeeecCCCCHHHHHHHHHhhCCCCeEEEEEeCchHHHHHHHHHHHhhccCCCCeE
Q 002830 789 RSTLITMVQALNHAKHGVDILSGTRVRTHFARPNWKEVFSRVATKHPNATIGVFYCGMPVLAKELKKLSHELTHRTSTRF 868 (875)
Q Consensus 789 rs~l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~~~v~~~~~~~~~~~~v~Vf~CGPp~l~~~lr~~~~~~~~~~~~~f 868 (875)
.+|++..+++... + ....||+|||+.|++.+++.+.+. +...-
T Consensus 161 -----------------------------~~~~~~~~~~~~~----~-~~~~vyicGp~~m~~~~~~~l~~~---gv~~~ 203 (211)
T cd06185 161 -----------------------------GGRLDLAALLAAP----P-AGTHVYVCGPEGMMDAVRAAAAAL---GWPEA 203 (211)
T ss_pred -----------------------------CCccCHHHHhccC----C-CCCEEEEECCHHHHHHHHHHHHHc---CCChh
Confidence 0355666665442 1 134799999999999999999884 44566
Q ss_pred EEEEecC
Q 002830 869 EFHKEYF 875 (875)
Q Consensus 869 ~fhkE~F 875 (875)
.+|.|.|
T Consensus 204 ~i~~e~F 210 (211)
T cd06185 204 RLHFERF 210 (211)
T ss_pred heEeeec
Confidence 7888887
No 44
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=99.90 E-value=1.4e-22 Score=216.03 Aligned_cols=144 Identities=22% Similarity=0.356 Sum_probs=118.8
Q ss_pred EEEEeeCCCEEEEEEecCC-CcccCCCcEEEEECCCCCCcccccceeecCC-CCCeEEEEEEecCCCcHHHHHHhhhccc
Q 002830 555 LKVSVLPGNVLSIVMSKPN-GFRYRSGQYIFLQCPTISSFEWHPFSITSAP-GDDHLSVHIRIVGDWTHELKQVFTEDKD 632 (875)
Q Consensus 555 ~~v~~l~~~vl~L~~~~p~-~~~ykpGQyvfL~~p~is~~e~HPFTItSaP-~dd~lsl~IR~~G~wT~~L~~~~~~~~~ 632 (875)
++++.+++++.+|+++.|. .+.|+||||++|++|.....++|||||+|.| ++++++|+||..|..|+.|.++
T Consensus 2 ~~~~~~t~~~~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~rpySi~s~~~~~~~l~l~i~~~G~~t~~l~~~------ 75 (243)
T cd06192 2 VKKEQLEPNLVLLTIKAPLAARLFRPGQFVFLRNFESPGLERIPLSLAGVDPEEGTISLLVEIRGPKTKLIAEL------ 75 (243)
T ss_pred ceEEEecCCEEEEEEEccchhhcCCCCCeEEEecCCCCCceeeeeEeeecCCCCCEEEEEEEEcCchHHHHHhC------
Confidence 4567788999999999875 4689999999999985455689999999997 4689999999999999887643
Q ss_pred ccccCCccccccCCCCCCCCCEEEEECcCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhccccCCCccccc
Q 002830 633 STYAIGRAEFGQGGTNRRIQPRLLVDGPYGAAAQDYSNYDVLLLVGLGIGATPFISILRDLLNNTREELMDSNTDSSRSA 712 (875)
Q Consensus 633 ~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~~~~~~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~~~~~~~~~~~ 712 (875)
.+| ..+.|.||||.+.......+++||||||+||||++|+++++..+
T Consensus 76 ---~~G--------------~~l~i~gP~G~~~~~~~~~~~~lliagGtGiap~~~~l~~~~~~---------------- 122 (243)
T cd06192 76 ---KPG--------------EKLDVMGPLGNGFEGPKKGGTVLLVAGGIGLAPLLPIAKKLAAN---------------- 122 (243)
T ss_pred ---CCC--------------CEEEEEccCCCCCccCCCCCEEEEEeCcccHHHHHHHHHHHHHC----------------
Confidence 334 78999999998754333478999999999999999999998643
Q ss_pred ccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCchhhHHHHHHHH
Q 002830 713 SLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPGSFEWFKGVMDQV 764 (875)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~eWf~~~L~el 764 (875)
.++++++|.+|+.+++ ++.+.+.++
T Consensus 123 --------------------------~~~v~l~~~~r~~~d~-~~~~el~~~ 147 (243)
T cd06192 123 --------------------------GNKVTVLAGAKKAKEE-FLDEYFELP 147 (243)
T ss_pred --------------------------CCeEEEEEecCcHHHH-HHHHHHHhh
Confidence 3579999999999986 576666554
No 45
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=99.90 E-value=2.8e-22 Score=221.04 Aligned_cols=221 Identities=15% Similarity=0.236 Sum_probs=153.7
Q ss_pred eeeEEEEEEeeC-----CCEEEEEEecCCCcccCCCcEEEEECCCCC------CcccccceeecCCCC-----CeEEEEE
Q 002830 550 FSAKDLKVSVLP-----GNVLSIVMSKPNGFRYRSGQYIFLQCPTIS------SFEWHPFSITSAPGD-----DHLSVHI 613 (875)
Q Consensus 550 ~~~~i~~v~~l~-----~~vl~L~~~~p~~~~ykpGQyvfL~~p~is------~~e~HPFTItSaP~d-----d~lsl~I 613 (875)
+.++|++++.+. ++|.+|+++.|..+.|+||||+.|..|... +..+++|||+|+|.+ ..++|+|
T Consensus 25 ~~~~V~~i~~~~~p~~~~~v~~l~l~~~~~~~f~aGQy~~l~~~~~~~~~~g~~~~~R~YSIaS~p~~~~~~~~~lel~V 104 (307)
T PLN03116 25 YTATIVSVERIVGPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGTNPKKPGAPHNVRLYSIASTRYGDDFDGKTASLCV 104 (307)
T ss_pred EEEEEEeeEEcccCCCCCceEEEEEecCCCCceecCceEeeeCCCCChhhcCCcCCceeEEecCCCCCcCCCCCEEEEEE
Confidence 467888888887 899999999988999999999999877431 124899999999942 2799999
Q ss_pred Eec---------------CCCcHHHHHHhhhcccccccCCccccccCCCCCCCCCEEEEECcCCCCCCCC--CCCCeEEE
Q 002830 614 RIV---------------GDWTHELKQVFTEDKDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAAAQDY--SNYDVLLL 676 (875)
Q Consensus 614 R~~---------------G~wT~~L~~~~~~~~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~~~~~--~~yd~vlL 676 (875)
|.. |-.|..|.+ + .+| ..|.|.||+|.+.... ...+++||
T Consensus 105 r~~~~~~~~~~~~~~~~~G~~S~~L~~-l--------~~G--------------d~v~v~gP~G~f~~~~~~~~~~~~vl 161 (307)
T PLN03116 105 RRAVYYDPETGKEDPAKKGVCSNFLCD-A--------KPG--------------DKVQITGPSGKVMLLPEEDPNATHIM 161 (307)
T ss_pred EEEEEecCCcCCCCCccCcchhhhHhh-C--------CCC--------------CEEEEEEecCCceeCCCCCCCCcEEE
Confidence 964 445665554 2 233 7899999999975411 33468999
Q ss_pred EEcCcCHHHHHHHHHHHHHhhhhhccccCCCcccccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCchhh
Q 002830 677 VGLGIGATPFISILRDLLNNTREELMDSNTDSSRSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPGSFEW 756 (875)
Q Consensus 677 VagGiGITP~iSiLkdll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~eW 756 (875)
||||+||||++|++++++...... .....+++|+|++|+.+++ .
T Consensus 162 IAgGtGIaP~~sml~~~l~~~~~~-----------------------------------~~~~~~v~L~~g~R~~~d~-~ 205 (307)
T PLN03116 162 VATGTGIAPFRGFLRRMFMEDVPA-----------------------------------FKFGGLAWLFLGVANSDSL-L 205 (307)
T ss_pred EecCccHHHHHHHHHHHHhhcccc-----------------------------------ccCCCcEEEEEecCCcccc-h
Confidence 999999999999999987542100 0013579999999999987 6
Q ss_pred HHHHHHHHHhhcCCCcEEEEEEecccccCCChhhHHHHHHHhhhcccCCcccccCCeeeeecCCCCHHHHHHHHHhh---
Q 002830 757 FKGVMDQVAEMDLKGQIELHNYLTSVYEEGDARSTLITMVQALNHAKHGVDILSGTRVRTHFARPNWKEVFSRVATK--- 833 (875)
Q Consensus 757 f~~~L~el~e~~~~~~iev~~ylT~~~~~~d~rs~l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~~~v~~~~~~~--- 833 (875)
|.++|+++++.. .+.+.++..+++..+... | ++-...+.+.+....
T Consensus 206 ~~deL~~l~~~~-~~~~~~~~~~sr~~~~~~-----------------------g-------~~g~v~~~l~~~~~~~~~ 254 (307)
T PLN03116 206 YDDEFERYLKDY-PDNFRYDYALSREQKNKK-----------------------G-------GKMYVQDKIEEYSDEIFK 254 (307)
T ss_pred HHHHHHHHHHhC-CCcEEEEEEEccCCcccC-----------------------C-------CccchhhHHHHHHHHHHh
Confidence 888888887642 235777776664321100 0 011122222221110
Q ss_pred CCCCeEEEEEeCchHHHHHHHHHHHhh
Q 002830 834 HPNATIGVFYCGMPVLAKELKKLSHEL 860 (875)
Q Consensus 834 ~~~~~v~Vf~CGPp~l~~~lr~~~~~~ 860 (875)
.......||+|||++|++.+++.+.+.
T Consensus 255 ~~~~~~~vYiCGp~~mv~~v~~~L~~~ 281 (307)
T PLN03116 255 LLDNGAHIYFCGLKGMMPGIQDTLKRV 281 (307)
T ss_pred hhcCCcEEEEeCCHHHHHHHHHHHHHH
Confidence 011235799999999999998887765
No 46
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.90 E-value=1.7e-22 Score=231.36 Aligned_cols=230 Identities=17% Similarity=0.344 Sum_probs=165.1
Q ss_pred eeeEEEEEEeeCCCEEEEEEecC--CCcccCCCcEEEEECCCC-----------------------------CCcccccc
Q 002830 550 FSAKDLKVSVLPGNVLSIVMSKP--NGFRYRSGQYIFLQCPTI-----------------------------SSFEWHPF 598 (875)
Q Consensus 550 ~~~~i~~v~~l~~~vl~L~~~~p--~~~~ykpGQyvfL~~p~i-----------------------------s~~e~HPF 598 (875)
+.++|++++.+.+++.+++++.| ....|+||||+.|++|.. ....++||
T Consensus 134 ~~~~V~~~~~ls~~i~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~y 213 (409)
T PRK05464 134 WECTVISNDNVATFIKELVLKIPEGEEVPFRAGGYIQIEAPPHKVKYKDFDIPEEYRGDWDKFNLFRLVSKVDEPVIRAY 213 (409)
T ss_pred EEEEEEEcccCCchhheEEEecCCCCcccccCCceEEEEcccccccccccccchhhhhhhhhccccceeccCCCceeeee
Confidence 46788888999999999999887 357899999999999842 12357899
Q ss_pred eeecCCCC-CeEEEEEEec-----------CCCcHHHHHHhhhcccccccCCccccccCCCCCCCCCEEEEECcCCCCCC
Q 002830 599 SITSAPGD-DHLSVHIRIV-----------GDWTHELKQVFTEDKDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAAAQ 666 (875)
Q Consensus 599 TItSaP~d-d~lsl~IR~~-----------G~wT~~L~~~~~~~~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~~~ 666 (875)
||+|+|.+ +++.|+||.. |..|..|.++ .+| ..+.|.||+|.+..
T Consensus 214 Sias~p~~~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l---------~~G--------------d~v~v~gP~G~f~~ 270 (409)
T PRK05464 214 SMANYPEEKGIIMLNVRIATPPPGNPDVPPGIMSSYIFSL---------KPG--------------DKVTISGPFGEFFA 270 (409)
T ss_pred ccCCCCCCCCeEEEEEEEeecCCCcCCCCCCchhhHHHhC---------CCC--------------CEEEEEccccCcEe
Confidence 99999964 5899999963 7778777642 344 78999999999865
Q ss_pred CCCCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhccccCCCcccccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEE
Q 002830 667 DYSNYDVLLLVGLGIGATPFISILRDLLNNTREELMDSNTDSSRSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYW 746 (875)
Q Consensus 667 ~~~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~W 746 (875)
. ...+++|||||||||||++|++++++.+.. ..++++|+|
T Consensus 271 ~-~~~~~ivlIAgGtGIaP~~sml~~~l~~~~---------------------------------------~~~~v~L~~ 310 (409)
T PRK05464 271 K-DTDAEMVFIGGGAGMAPMRSHIFDQLKRLK---------------------------------------SKRKISFWY 310 (409)
T ss_pred c-CCCceEEEEEeccChhHHHHHHHHHHhCCC---------------------------------------CCceEEEEE
Confidence 3 456899999999999999999998875421 146899999
Q ss_pred EeCCCCchhhHHHHHHHHHhhcCCCcEEEEEEecccccCCChhhHHHHHHHhhhcccCCcccccCCeeeeecCCCCHHHH
Q 002830 747 VTREPGSFEWFKGVMDQVAEMDLKGQIELHNYLTSVYEEGDARSTLITMVQALNHAKHGVDILSGTRVRTHFARPNWKEV 826 (875)
Q Consensus 747 v~R~~~s~eWf~~~L~el~e~~~~~~iev~~ylT~~~~~~d~rs~l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~~~v 826 (875)
.+|+.+++ .|.+.++++++. .+++.++..+++..+ .+. ..| ..|+.+ +.+
T Consensus 311 g~r~~~d~-~~~~el~~l~~~--~~~~~~~~~~s~~~~-~~~--------------------~~g-----~~G~v~-~~l 360 (409)
T PRK05464 311 GARSLREM-FYVEDFDQLAAE--NPNFKWHVALSDPLP-EDN--------------------WTG-----YTGFIH-NVL 360 (409)
T ss_pred ecCCHHHh-hHHHHHHHHHHh--CCCeEEEEEEcCCCC-CCC--------------------CCC-----ccceeC-HHH
Confidence 99999987 577778777653 235777665553211 110 001 112221 112
Q ss_pred HHHHHhhC-CCCeEEEEEeCchHHHHHHHHHHHhhccCCCCeEEEEEecC
Q 002830 827 FSRVATKH-PNATIGVFYCGMPVLAKELKKLSHELTHRTSTRFEFHKEYF 875 (875)
Q Consensus 827 ~~~~~~~~-~~~~v~Vf~CGPp~l~~~lr~~~~~~~~~~~~~f~fhkE~F 875 (875)
.+.....+ +.....||+|||+.|++.+++.+.+. +...-.+|.|.|
T Consensus 361 ~~~~l~~~~~~~~~~vyiCGP~~m~~av~~~L~~~---Gv~~~~I~~E~F 407 (409)
T PRK05464 361 YENYLKDHEAPEDCEYYMCGPPMMNAAVIKMLKDL---GVEDENILLDDF 407 (409)
T ss_pred HHhhhhhcCCCCCeEEEEECCHHHHHHHHHHHHHc---CCCHHHEEEccc
Confidence 22222221 12346799999999999999999875 445666788877
No 47
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=99.90 E-value=2.9e-22 Score=214.38 Aligned_cols=144 Identities=22% Similarity=0.350 Sum_probs=118.6
Q ss_pred EEEEEEeeCCCEEEEEEecCCC-cccCCCcEEEEECCCCCCcccccceeecCC-CCCeEEEEEEecCCCcHHHHHHhhhc
Q 002830 553 KDLKVSVLPGNVLSIVMSKPNG-FRYRSGQYIFLQCPTISSFEWHPFSITSAP-GDDHLSVHIRIVGDWTHELKQVFTED 630 (875)
Q Consensus 553 ~i~~v~~l~~~vl~L~~~~p~~-~~ykpGQyvfL~~p~is~~e~HPFTItSaP-~dd~lsl~IR~~G~wT~~L~~~~~~~ 630 (875)
+|+++..+.+++..++++.|.. ..|+||||++|+++. ..++|||||+|+| ++++++|+||..|+.|..|.++
T Consensus 2 ~v~~~~~~t~d~~~~~l~~~~~~~~~~pGQf~~l~~~~--~~~~~pySi~s~~~~~~~~~~~vk~~G~~t~~l~~l---- 75 (248)
T cd06219 2 KILEKEELAPNVKLFEIEAPLIAKKAKPGQFVIVRADE--KGERIPLTIADWDPEKGTITIVVQVVGKSTRELATL---- 75 (248)
T ss_pred EEEEEEEeCCCeEEEEEEChhhhccCCCCcEEEEEcCC--CCCccceEeEEEcCCCCEEEEEEEeCCchHHHHHhc----
Confidence 5677888999999999998763 579999999999874 2468999999987 4679999999999999877543
Q ss_pred ccccccCCccccccCCCCCCCCCEE-EEECcCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhccccCCCcc
Q 002830 631 KDSTYAIGRAEFGQGGTNRRIQPRL-LVDGPYGAAAQDYSNYDVLLLVGLGIGATPFISILRDLLNNTREELMDSNTDSS 709 (875)
Q Consensus 631 ~~~~~~~G~s~~l~~~~~~~~~~~v-~IdGPYG~~~~~~~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~~~~~~~~ 709 (875)
.+| ..+ .|+||||.+.. ..+++++||||||+||||++|++++++..
T Consensus 76 -----~~G--------------~~v~~i~gP~G~~~~-~~~~~~~lliagG~GiaP~~~~l~~~~~~------------- 122 (248)
T cd06219 76 -----EEG--------------DKIHDVVGPLGKPSE-IENYGTVVFVGGGVGIAPIYPIAKALKEA------------- 122 (248)
T ss_pred -----CCC--------------CEeeeeecCCCCCee-cCCCCeEEEEeCcccHHHHHHHHHHHHHc-------------
Confidence 234 678 69999999754 34568999999999999999999997643
Q ss_pred cccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCchhhHHHHHHHHH
Q 002830 710 RSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPGSFEWFKGVMDQVA 765 (875)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~eWf~~~L~el~ 765 (875)
.++++|+|.+|+.+++ +|.++|.+++
T Consensus 123 -----------------------------~~~v~l~~~~r~~~~~-~~~~el~~l~ 148 (248)
T cd06219 123 -----------------------------GNRVITIIGARTKDLV-ILEDEFRAVS 148 (248)
T ss_pred -----------------------------CCeEEEEEEcCCHHHh-hhHHHHHhhc
Confidence 2579999999999998 6777777664
No 48
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=99.90 E-value=2.7e-22 Score=216.46 Aligned_cols=207 Identities=20% Similarity=0.260 Sum_probs=150.5
Q ss_pred eeeEEEEEEeeCCCEEEEEEecCCCcccCCCcEEEEECCCCCCcccccceeecCCCCCeEEEEEEecCCCcHHHHHHhhh
Q 002830 550 FSAKDLKVSVLPGNVLSIVMSKPNGFRYRSGQYIFLQCPTISSFEWHPFSITSAPGDDHLSVHIRIVGDWTHELKQVFTE 629 (875)
Q Consensus 550 ~~~~i~~v~~l~~~vl~L~~~~p~~~~ykpGQyvfL~~p~is~~e~HPFTItSaP~dd~lsl~IR~~G~wT~~L~~~~~~ 629 (875)
.+++|++++.+++++..++++.| +.|+||||+.|++|... .|||||++.+ ++.++|+||..|..|..|.++
T Consensus 8 ~~~~v~~i~~~t~~~~~~~l~~~--~~~~pGQfi~l~~~~~~---~~pySi~~~~-~~~~~~~Ik~~G~~S~~L~~l--- 78 (263)
T PRK08221 8 AAYKILDITKHTDIEYTFRVEVD--GPVKPGQFFEVSLPKVG---EAPISVSDYG-DGYIDLTIRRVGKVTDEIFNL--- 78 (263)
T ss_pred ccEEEEEEeccCCcEEEEEecCC--CCCCCCceEEEEeCCCC---cceeeccCCC-CCEEEEEEEeCCchhhHHHhC---
Confidence 34678889999999999999875 57999999999998643 3999999876 678999999999999887642
Q ss_pred cccccccCCccccccCCCCCCCCCEEEEECcCCC-CCCCCCCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhccccCCCc
Q 002830 630 DKDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGA-AAQDYSNYDVLLLVGLGIGATPFISILRDLLNNTREELMDSNTDS 708 (875)
Q Consensus 630 ~~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~-~~~~~~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~~~~~~~ 708 (875)
.+| ..+.|.||||. +..+....+++||||||+||||++|++++++++..
T Consensus 79 ------~~G--------------d~v~v~gP~G~~f~~~~~~~~~~llIAgGtGItP~~sil~~~~~~~~---------- 128 (263)
T PRK08221 79 ------KEG--------------DKLFLRGPYGNGFPVDTYKGKELIVVAGGTGVAPVKGLMRYFYENPQ---------- 128 (263)
T ss_pred ------CCC--------------CEEEEECCCCCCcccCccCCccEEEEcccccHHHHHHHHHHHHhCcc----------
Confidence 344 78999999998 43333345799999999999999999999875411
Q ss_pred ccccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCchhhHHHHHHHHHhhcCCCcEEEEEEecccccCCCh
Q 002830 709 SRSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPGSFEWFKGVMDQVAEMDLKGQIELHNYLTSVYEEGDA 788 (875)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~eWf~~~L~el~e~~~~~~iev~~ylT~~~~~~d~ 788 (875)
..++++|+|++|+.+++ .|.++|.++++. ..++..+++.. +.
T Consensus 129 -----------------------------~~~~v~L~~g~r~~~~l-~~~~el~~~~~~-----~~~~~~~~~~~---~~ 170 (263)
T PRK08221 129 -----------------------------EIKSLDLILGFKNPDDI-LFKEDLKRWREK-----INLILTLDEGE---EG 170 (263)
T ss_pred -----------------------------cCceEEEEEecCCHHHh-hHHHHHHHHhhc-----CcEEEEecCCC---CC
Confidence 14689999999999987 678888877642 12333233211 00
Q ss_pred hhHHHHHHHhhhcccCCcccccCCeeeeecCCCCHHHHHHHHHhhCCCCeEEEEEeCchHHHHHHHHHHHhhc
Q 002830 789 RSTLITMVQALNHAKHGVDILSGTRVRTHFARPNWKEVFSRVATKHPNATIGVFYCGMPVLAKELKKLSHELT 861 (875)
Q Consensus 789 rs~l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~~~v~~~~~~~~~~~~v~Vf~CGPp~l~~~lr~~~~~~~ 861 (875)
...+.||.+ +.+.+.... +.....||+||||.|++.+++.+.+..
T Consensus 171 -------------------------~~~~~G~v~--~~l~~~~~~-~~~~~~vylCGp~~mv~~~~~~L~~~G 215 (263)
T PRK08221 171 -------------------------YRGNVGLVT--KYIPELTLK-DIDNMQVIVVGPPIMMKFTVLEFLKRG 215 (263)
T ss_pred -------------------------CccCccccC--hhhHhccCC-CcCCeEEEEECCHHHHHHHHHHHHHcC
Confidence 001224544 122222111 113457999999999999999998754
No 49
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.90 E-value=3e-22 Score=212.25 Aligned_cols=200 Identities=20% Similarity=0.337 Sum_probs=147.6
Q ss_pred eEEEEEEeeCCCEEEEEEecCCCcccCCCcEEEEECCCCCCcccccceeecCCCCCeEEEEEEecCCCcHHHHHHhhhcc
Q 002830 552 AKDLKVSVLPGNVLSIVMSKPNGFRYRSGQYIFLQCPTISSFEWHPFSITSAPGDDHLSVHIRIVGDWTHELKQVFTEDK 631 (875)
Q Consensus 552 ~~i~~v~~l~~~vl~L~~~~p~~~~ykpGQyvfL~~p~is~~e~HPFTItSaP~dd~lsl~IR~~G~wT~~L~~~~~~~~ 631 (875)
++|+++..+++++.+++++.| +.|+||||+.|+.|.. ..|||||+|.| +.+.|+||..|.+|+.|.++
T Consensus 1 ~~v~~~~~~t~~~~~~~l~~~--~~~~pGQ~v~l~~~~~---~~~~~Si~s~~--~~l~~~v~~~G~~s~~L~~l----- 68 (233)
T cd06220 1 VTIKEVIDETPTVKTFVFDWD--FDFKPGQFVMVWVPGV---DEIPMSLSYID--GPNSITVKKVGEATSALHDL----- 68 (233)
T ss_pred CEEEEEEEEcCCEEEEEEecC--CCCCCCceEEEEeCCC---CcceeEEecCC--CeEEEEEEecChHHHHHHhc-----
Confidence 367788999999999999875 5899999999999864 36999999999 78999999999999998763
Q ss_pred cccccCCccccccCCCCCCCCCEEEEECcCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhccccCCCcccc
Q 002830 632 DSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAAAQDYSNYDVLLLVGLGIGATPFISILRDLLNNTREELMDSNTDSSRS 711 (875)
Q Consensus 632 ~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~~~~~~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~~~~~~~~~~ 711 (875)
.+| ..+.|.||||.+.. .. ++++||||||+||||++|++++++.+
T Consensus 69 ----~~G--------------d~v~i~gP~G~~f~-~~-~~~~vliAgGtGitP~~sil~~~~~~--------------- 113 (233)
T cd06220 69 ----KEG--------------DKLGIRGPYGNGFE-LV-GGKVLLIGGGIGIAPLAPLAERLKKA--------------- 113 (233)
T ss_pred ----CCC--------------CEEEEECcCCCCcc-CC-CCeEEEEecCcChHHHHHHHHHHHhc---------------
Confidence 234 78999999998532 22 78999999999999999999987532
Q ss_pred cccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCchhhHHHHHHHHHhhcCCCcEEEEEEecccccCCChhhH
Q 002830 712 ASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPGSFEWFKGVMDQVAEMDLKGQIELHNYLTSVYEEGDARST 791 (875)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~eWf~~~L~el~e~~~~~~iev~~ylT~~~~~~d~rs~ 791 (875)
++++++|.+|+.+++ .+.+.|++ . ..+ + +.+.. +..
T Consensus 114 ----------------------------~~i~l~~~~r~~~d~-~~~~eL~~---~---~~~--~-~~~~~---~~~--- 149 (233)
T cd06220 114 ----------------------------ADVTVLLGARTKEEL-LFLDRLRK---S---DEL--I-VTTDD---GSY--- 149 (233)
T ss_pred ----------------------------CCEEEEEecCChHHC-hhHHHHhh---C---CcE--E-EEEeC---CCC---
Confidence 568999999999987 46665554 1 111 1 22210 000
Q ss_pred HHHHHHhhhcccCCcccccCCeeeeecCCCCHHHHHHHHHhhCCCCeEEEEEeCchHHHHHHHHHHHhhccCCCCeEEEE
Q 002830 792 LITMVQALNHAKHGVDILSGTRVRTHFARPNWKEVFSRVATKHPNATIGVFYCGMPVLAKELKKLSHELTHRTSTRFEFH 871 (875)
Q Consensus 792 l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~~~v~~~~~~~~~~~~v~Vf~CGPp~l~~~lr~~~~~~~~~~~~~f~fh 871 (875)
+ ..|+. .+++.+.. ......||+|||+.|++.+++.+.+.+ . ...+|
T Consensus 150 -------------------~-----~~g~~--~~~l~~~~---~~~~~~vyicGp~~m~~~~~~~L~~~g---~-~~~i~ 196 (233)
T cd06220 150 -------------------G-----FKGFV--TDLLKELD---LEEYDAIYVCGPEIMMYKVLEILDERG---V-RAQFS 196 (233)
T ss_pred -------------------c-----cccee--hHHHhhhc---ccCCCEEEEECCHHHHHHHHHHHHhcC---C-cEEEE
Confidence 0 00222 23443332 112236999999999999999998753 2 67788
Q ss_pred EecC
Q 002830 872 KEYF 875 (875)
Q Consensus 872 kE~F 875 (875)
.|.|
T Consensus 197 ~e~f 200 (233)
T cd06220 197 LERY 200 (233)
T ss_pred eccc
Confidence 8876
No 50
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=99.89 E-value=9.6e-22 Score=214.78 Aligned_cols=222 Identities=18% Similarity=0.303 Sum_probs=155.0
Q ss_pred eeeEEEEEEeeC-----CCEEEEEEecCCCcccCCCcEEEEECCCCC-----CcccccceeecCCCC-----CeEEEEEE
Q 002830 550 FSAKDLKVSVLP-----GNVLSIVMSKPNGFRYRSGQYIFLQCPTIS-----SFEWHPFSITSAPGD-----DHLSVHIR 614 (875)
Q Consensus 550 ~~~~i~~v~~l~-----~~vl~L~~~~p~~~~ykpGQyvfL~~p~is-----~~e~HPFTItSaP~d-----d~lsl~IR 614 (875)
+.++|++++.+. +++.++++..+..+.|+||||+.|.+|... +...|||||+|.|.+ +.+.|+||
T Consensus 9 ~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~g~~~~~R~YSIas~p~~~~~~~~~l~l~Vk 88 (286)
T cd06208 9 LIGKVVSNTRLTGPDAPGEVCHIVIDHGGKLPYLEGQSIGIIPPGTDAKNGKPHKLRLYSIASSRYGDDGDGKTLSLCVK 88 (286)
T ss_pred eEEEEEeceeccCCCCCcceEEEEEeCCCcccccCCceEEEECCCcchhcCCCCCceeeEecCCccccCCCCCEEEEEEE
Confidence 456788888887 689999999877889999999999877432 134799999999853 58999999
Q ss_pred ec------------CCCcHHHHHHhhhcccccccCCccccccCCCCCCCCCEEEEECcCCCCCCCC-CCCCeEEEEEcCc
Q 002830 615 IV------------GDWTHELKQVFTEDKDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAAAQDY-SNYDVLLLVGLGI 681 (875)
Q Consensus 615 ~~------------G~wT~~L~~~~~~~~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~~~~~-~~yd~vlLVagGi 681 (875)
.. |..|..|.++ .+| ..|.|.||+|.+...- ...+++||||||+
T Consensus 89 ~~~~~~~~~~~~~~G~~S~~L~~l---------~~G--------------d~v~v~gP~G~~~~~~~~~~~~~vlIagGt 145 (286)
T cd06208 89 RLVYTDPETDETKKGVCSNYLCDL---------KPG--------------DDVQITGPVGKTMLLPEDPNATLIMIATGT 145 (286)
T ss_pred EEEEecCCCCceeccchHHHHhhC---------CCC--------------CEEEEEeecCCcccCCCCCCCCEEEEecCc
Confidence 87 5566666652 233 7899999999875321 2346899999999
Q ss_pred CHHHHHHHHHHHHHhhhhhccccCCCcccccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCchhhHHHHH
Q 002830 682 GATPFISILRDLLNNTREELMDSNTDSSRSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPGSFEWFKGVM 761 (875)
Q Consensus 682 GITP~iSiLkdll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~eWf~~~L 761 (875)
|||||+|++++++.+.... ....+++.++|++|+.+++ .|.+.+
T Consensus 146 GIaP~~s~l~~~~~~~~~~-----------------------------------~~~~~~v~L~~g~r~~~d~-~~~~el 189 (286)
T cd06208 146 GIAPFRSFLRRLFREKHAD-----------------------------------YKFTGLAWLFFGVPNSDSL-LYDDEL 189 (286)
T ss_pred cHHHHHHHHHHHHHhhhcc-----------------------------------cCCCCCEEEEEEecCccch-hHHHHH
Confidence 9999999999987652110 0124679999999999997 578888
Q ss_pred HHHHhhcCCCcEEEEEEecccccCCChhhHHHHHHHhhhcccCCcccccCCeeeeecCCCCHHHHHHH----HHhhCCCC
Q 002830 762 DQVAEMDLKGQIELHNYLTSVYEEGDARSTLITMVQALNHAKHGVDILSGTRVRTHFARPNWKEVFSR----VATKHPNA 837 (875)
Q Consensus 762 ~el~e~~~~~~iev~~ylT~~~~~~d~rs~l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~~~v~~~----~~~~~~~~ 837 (875)
+++++. ....++++..+++...... |.. |+ +.+.+.+ +....+..
T Consensus 190 ~~l~~~-~~~~~~~~~~~sr~~~~~~-----------------------g~~-----g~--v~~~i~~~~~~l~~~l~~~ 238 (286)
T cd06208 190 EKYPKQ-YPDNFRIDYAFSREQKNAD-----------------------GGK-----MY--VQDRIAEYAEEIWNLLDKD 238 (286)
T ss_pred HHHHHh-CCCcEEEEEEEcCCCCCCC-----------------------CCc-----ee--hhhHHHHhHHHHHHHHhcC
Confidence 888763 2335777777764211100 000 00 1112211 11111123
Q ss_pred eEEEEEeCchHHHHHHHHHHHhhc
Q 002830 838 TIGVFYCGMPVLAKELKKLSHELT 861 (875)
Q Consensus 838 ~v~Vf~CGPp~l~~~lr~~~~~~~ 861 (875)
...||+|||++|++.+++.+.+.-
T Consensus 239 ~~~vYiCGp~~m~~~v~~~L~~~~ 262 (286)
T cd06208 239 NTHVYICGLKGMEPGVDDALTSVA 262 (286)
T ss_pred CcEEEEeCCchHHHHHHHHHHHHH
Confidence 346999999999999999988743
No 51
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=99.89 E-value=1.4e-21 Score=210.29 Aligned_cols=222 Identities=25% Similarity=0.378 Sum_probs=171.8
Q ss_pred eeeeeEEEEEEeeCCCEEEEEEecCCCcc--cCCCcEEEEECCCCCCcccccceeecCCCCC-eEEEEEEec--CCCcHH
Q 002830 548 GHFSAKDLKVSVLPGNVLSIVMSKPNGFR--YRSGQYIFLQCPTISSFEWHPFSITSAPGDD-HLSVHIRIV--GDWTHE 622 (875)
Q Consensus 548 ~~~~~~i~~v~~l~~~vl~L~~~~p~~~~--ykpGQyvfL~~p~is~~e~HPFTItSaP~dd-~lsl~IR~~--G~wT~~ 622 (875)
.+..++|++++..+.++.++++..|.+.. |+||||+.|.++.-+...++.|||+|+|.++ .+.+.||.. |..|+.
T Consensus 4 ~~~~~~V~~v~~~t~di~sf~l~~~~g~~~~f~pGQ~i~v~l~~~~~~~~R~YSl~s~p~~~~~~~isVk~~~~G~~S~~ 83 (266)
T COG1018 4 GFRRVTVTSVEPETDDVFSFTLEPPDGLRLDFEPGQYITVGLPNGGEPLLRAYSLSSAPDEDSLYRISVKREDGGGGSNW 83 (266)
T ss_pred ceEEEEEEEEEEecCceEEEEEEcCCCCccccCCCCeEEEEecCCCceeeEEEEeccCCCCCceEEEEEEEeCCCcccHH
Confidence 35678899999999999999999998774 9999999999997776799999999999875 889999988 778888
Q ss_pred HHHHhhhcccccccCCccccccCCCCCCCCCEEEEECcCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhcc
Q 002830 623 LKQVFTEDKDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAAAQDYSNYDVLLLVGLGIGATPFISILRDLLNNTREELM 702 (875)
Q Consensus 623 L~~~~~~~~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~~~~~~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~ 702 (875)
|++.+ .+| ++|.|.+|.|.+..+....++++|+|||||||||+||++++...
T Consensus 84 Lh~~l--------k~G--------------d~l~v~~P~G~F~l~~~~~~~~llla~G~GITP~lSml~~~~~~------ 135 (266)
T COG1018 84 LHDHL--------KVG--------------DTLEVSAPAGDFVLDDLPERKLLLLAGGIGITPFLSMLRTLLDR------ 135 (266)
T ss_pred HHhcC--------CCC--------------CEEEEecCCCCccCCCCCCCcEEEEeccccHhHHHHHHHHHHHh------
Confidence 88654 344 89999999999986655556899999999999999999998765
Q ss_pred ccCCCcccccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCchhhHHHHHHHHHhhcCCCcEEEEEEeccc
Q 002830 703 DSNTDSSRSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPGSFEWFKGVMDQVAEMDLKGQIELHNYLTSV 782 (875)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~eWf~~~L~el~e~~~~~~iev~~ylT~~ 782 (875)
.. .+|.|++++|+.++. -|+++ ++++... .+...++.|.-.
T Consensus 136 ----------------------------------~~-~~v~l~h~~R~~~~~-af~de-~~l~~~~-~~~~~~~~~~~~- 176 (266)
T COG1018 136 ----------------------------------GP-ADVVLVHAARTPADL-AFRDE-LELAAEL-PNALLLGLYTER- 176 (266)
T ss_pred ----------------------------------CC-CCEEEEEecCChhhc-chhhH-HHHHhhC-CCCeeEEEEEec-
Confidence 23 789999999999998 57776 6665432 233445544320
Q ss_pred ccCCChhhHHHHHHHhhhcccCCcccccCCeeeeecCCCCHHHHHHHHHhhCCCCeEEEEEeCchHHHHHHHHHHHhhcc
Q 002830 783 YEEGDARSTLITMVQALNHAKHGVDILSGTRVRTHFARPNWKEVFSRVATKHPNATIGVFYCGMPVLAKELKKLSHELTH 862 (875)
Q Consensus 783 ~~~~d~rs~l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~~~v~~~~~~~~~~~~v~Vf~CGPp~l~~~lr~~~~~~~~ 862 (875)
++ .-||++...+.. ..+.....+|+|||.+|++.++..+.+.+
T Consensus 177 ---~~-----------------------------~~g~~~~~~l~~----~~~~~~r~~y~CGp~~fm~av~~~l~~~g- 219 (266)
T COG1018 177 ---GK-----------------------------LQGRIDVSRLLS----AAPDGGREVYLCGPGPFMQAVRLALEALG- 219 (266)
T ss_pred ---CC-----------------------------ccccccHHHHhc----cCCCCCCEEEEECCHHHHHHHHHHHHHcC-
Confidence 00 124555544322 22222157999999999999999998854
Q ss_pred CCCCeEEEEEecC
Q 002830 863 RTSTRFEFHKEYF 875 (875)
Q Consensus 863 ~~~~~f~fhkE~F 875 (875)
...-.+|.|.|
T Consensus 220 --~~~~~vh~E~F 230 (266)
T COG1018 220 --VPDDRVHLEGF 230 (266)
T ss_pred --CChhcEEEeec
Confidence 34567888887
No 52
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.89 E-value=4.6e-22 Score=227.41 Aligned_cols=230 Identities=17% Similarity=0.360 Sum_probs=163.5
Q ss_pred eeeEEEEEEeeCCCEEEEEEecCC--CcccCCCcEEEEECCCC-----------------------------CCcccccc
Q 002830 550 FSAKDLKVSVLPGNVLSIVMSKPN--GFRYRSGQYIFLQCPTI-----------------------------SSFEWHPF 598 (875)
Q Consensus 550 ~~~~i~~v~~l~~~vl~L~~~~p~--~~~ykpGQyvfL~~p~i-----------------------------s~~e~HPF 598 (875)
+.++|++++.+.+++.+++++.+. ++.|+||||+.|.+|.. ....+|||
T Consensus 130 ~~~~v~~~~~~s~~i~~l~l~~~~~~~~~~~pGQfv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~y 209 (405)
T TIGR01941 130 WECEVISNDNVATFIKELVLKLPDGESVPFKAGGYIQIEAPPHVVKYADFDIPPEYRGDWEKFNLFDLVSKVDEETVRAY 209 (405)
T ss_pred eeeEEEEcccccchhheEEEecCCCceeeecCCceEEEEcccccccccccccchhhhhhHhhhcchheeccCCCccceee
Confidence 456788888899999999998764 47899999999999853 12357999
Q ss_pred eeecCCCC-CeEEEEEEec-----------CCCcHHHHHHhhhcccccccCCccccccCCCCCCCCCEEEEECcCCCCCC
Q 002830 599 SITSAPGD-DHLSVHIRIV-----------GDWTHELKQVFTEDKDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAAAQ 666 (875)
Q Consensus 599 TItSaP~d-d~lsl~IR~~-----------G~wT~~L~~~~~~~~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~~~ 666 (875)
||+|.|.+ ++++|+||.. |..|..|.++ .+| ..+.|.||||.+..
T Consensus 210 Sias~p~~~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l---------~~G--------------d~v~i~gP~G~f~l 266 (405)
T TIGR01941 210 SMANYPAEKGIIKLNVRIATPPFINSDIPPGIMSSYIFSL---------KPG--------------DKVTISGPFGEFFA 266 (405)
T ss_pred cCCCCCCCCCeEEEEEEEeccCcccCCCCCCcHHHHHhcC---------CCc--------------CEEEEEeccCCCee
Confidence 99999964 6899999974 7777777642 344 78999999999865
Q ss_pred CCCCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhccccCCCcccccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEE
Q 002830 667 DYSNYDVLLLVGLGIGATPFISILRDLLNNTREELMDSNTDSSRSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYW 746 (875)
Q Consensus 667 ~~~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~W 746 (875)
. ...+++||||||+||||++|++++++.+.. ..++++++|
T Consensus 267 ~-~~~~~lvlIAgGtGIaP~lsmi~~~l~~~~---------------------------------------~~~~v~l~~ 306 (405)
T TIGR01941 267 K-DTDAEMVFIGGGAGMAPMRSHIFDQLKRLK---------------------------------------SKRKISFWY 306 (405)
T ss_pred c-CCCCCEEEEecCcCcchHHHHHHHHHhcCC---------------------------------------CCCeEEEEE
Confidence 3 345789999999999999999998765421 146799999
Q ss_pred EeCCCCchhhHHHHHHHHHhhcCCCcEEEEEEecccccCCChhhHHHHHHHhhhcccCCcccccCCeeeeecCCCCHHHH
Q 002830 747 VTREPGSFEWFKGVMDQVAEMDLKGQIELHNYLTSVYEEGDARSTLITMVQALNHAKHGVDILSGTRVRTHFARPNWKEV 826 (875)
Q Consensus 747 v~R~~~s~eWf~~~L~el~e~~~~~~iev~~ylT~~~~~~d~rs~l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~~~v 826 (875)
++|+.+++ .|.+.++++++. .+++.++..+++..++ |. ..| ..|+.. +.+
T Consensus 307 g~R~~~dl-~~~~el~~l~~~--~~~~~~~~~~s~~~~~-~~--------------------~~g-----~~G~v~-~~l 356 (405)
T TIGR01941 307 GARSLREM-FYQEDFDQLEAE--NPNFVWHVALSDPQPE-DN--------------------WTG-----YTGFIH-NVL 356 (405)
T ss_pred ecCCHHHH-hHHHHHHHHHHh--CCCeEEEEEeCCCCcc-CC--------------------CCC-----ccceeC-HHH
Confidence 99999987 688888877653 2357777666542111 10 001 012221 111
Q ss_pred HHHHHhhCC-CCeEEEEEeCchHHHHHHHHHHHhhccCCCCeEEEEEecC
Q 002830 827 FSRVATKHP-NATIGVFYCGMPVLAKELKKLSHELTHRTSTRFEFHKEYF 875 (875)
Q Consensus 827 ~~~~~~~~~-~~~v~Vf~CGPp~l~~~lr~~~~~~~~~~~~~f~fhkE~F 875 (875)
......... .....||+|||+.|++.+++.+.+. +...-.+|.|.|
T Consensus 357 ~~~~l~~~~~~~~~~vylCGP~~m~~av~~~L~~~---Gv~~~~I~~E~F 403 (405)
T TIGR01941 357 YENYLKDHDAPEDCEFYMCGPPMMNAAVIKMLEDL---GVERENILLDDF 403 (405)
T ss_pred HHhhhcccCCCCCeEEEEeCCHHHHHHHHHHHHHc---CCCHHHEEEecc
Confidence 222222111 1345799999999999999999875 444556788877
No 53
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=99.89 E-value=1.3e-21 Score=216.39 Aligned_cols=225 Identities=12% Similarity=0.122 Sum_probs=159.9
Q ss_pred EeeeeeeEEEEEEeeCCCEEEEEEecCC--CcccCCCcEEEEECCCC---CCcccccceeecCCC-CCeEEEEEEec--C
Q 002830 546 RSGHFSAKDLKVSVLPGNVLSIVMSKPN--GFRYRSGQYIFLQCPTI---SSFEWHPFSITSAPG-DDHLSVHIRIV--G 617 (875)
Q Consensus 546 r~~~~~~~i~~v~~l~~~vl~L~~~~p~--~~~ykpGQyvfL~~p~i---s~~e~HPFTItSaP~-dd~lsl~IR~~--G 617 (875)
+.+++.++|.+++.+++++.+++++.|. .+.|+||||+.+.++.- ..-.++||||+|.|+ +++++|+||.. |
T Consensus 49 ~~~~~~~~V~~i~~~t~dv~~f~f~lp~~~~~~f~pGQ~l~l~~~~~~~~~~~~~R~YSiaS~p~~~~~le~~IK~~~~G 128 (325)
T PTZ00274 49 SQRYEPYQLGEVIPITHDTALFRFLLHSEEEFNLKPCSTLQACYKYGVQPMDQCQRFYTPVTANHTKGYFDIIVKRKKDG 128 (325)
T ss_pred CCceEEEEEEEEEEeCCCeEEEEEeCCcccccCCCCccEEEEEEecCCCCCCEEEEeeecCCCCCCCCeEEEEEEEcCCC
Confidence 4567889999999999999999998764 68999999999877631 123689999999996 57999999996 5
Q ss_pred CCcHHHHHHhhhcccccccCCccccccCCCCCCCCCEEEEECcCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHHHhh
Q 002830 618 DWTHELKQVFTEDKDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAAAQDYSNYDVLLLVGLGIGATPFISILRDLLNNT 697 (875)
Q Consensus 618 ~wT~~L~~~~~~~~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~~~~~~~yd~vlLVagGiGITP~iSiLkdll~~~ 697 (875)
..|..|.++ .+| ..|.|.||+|....+....+++|||||||||||++||+++++.+.
T Consensus 129 ~~S~~L~~l---------k~G--------------d~v~v~GP~f~~~~~~~~~~~lvlIAGGsGITP~lsmlr~~l~~~ 185 (325)
T PTZ00274 129 LMTNHLFGM---------HVG--------------DKLLFRSVTFKIQYRPNRWKHVGMIAGGTGFTPMLQIIRHSLTEP 185 (325)
T ss_pred cccHHHhcC---------CCC--------------CEEEEeCCeeecccCCCCCceEEEEeCCcchhHHHHHHHHHHhcc
Confidence 568888752 344 799999998876433334578999999999999999999988653
Q ss_pred hhhccccCCCcccccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCchhhHHHHHHHHHhhcCCCcEEEEE
Q 002830 698 REELMDSNTDSSRSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPGSFEWFKGVMDQVAEMDLKGQIELHN 777 (875)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~eWf~~~L~el~e~~~~~~iev~~ 777 (875)
... ......+|+|+|++|+.+++ .|+++|+++++.. .+.++++.
T Consensus 186 ~~~----------------------------------~~~~~~~v~Llyg~R~~~di-~~~~eL~~La~~~-~~~f~v~~ 229 (325)
T PTZ00274 186 WDS----------------------------------GEVDRTKLSFLFCNRTERHI-LLKGLFDDLARRY-SNRFKVYY 229 (325)
T ss_pred ccc----------------------------------ccCCCCeEEEEEEcCCHHHh-hHHHHHHHHHHhC-CCcEEEEE
Confidence 110 00124589999999999998 7888899887642 23577776
Q ss_pred EecccccCCChhhHHHHHHHhhhcccCCcccccCCeeeeecCCCCHHHHHHHHHhhCCCCeEEEEEeCchHHHHHHHHH
Q 002830 778 YLTSVYEEGDARSTLITMVQALNHAKHGVDILSGTRVRTHFARPNWKEVFSRVATKHPNATIGVFYCGMPVLAKELKKL 856 (875)
Q Consensus 778 ylT~~~~~~d~rs~l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~~~v~~~~~~~~~~~~v~Vf~CGPp~l~~~lr~~ 856 (875)
.++...+. +. ...+.||.+-. ++.+...........||+|||+.|++.+...
T Consensus 230 ~ls~~~~~-~~-------------------------w~g~~G~V~~~-ll~~~~~~~~~~~~~vylCGPp~Mm~av~~~ 281 (325)
T PTZ00274 230 TIDQAVEP-DK-------------------------WNHFLGYVTKE-MVRRTMPAPEEKKKIIMLCGPDQLLNHVAGT 281 (325)
T ss_pred EeCCCCcc-cC-------------------------CCCCCCccCHH-HHHHhcCCCccCCcEEEEeCCHHHHHHhcCC
Confidence 66542111 00 00123555532 3333322111122469999999999998553
No 54
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=99.89 E-value=9.3e-22 Score=212.07 Aligned_cols=206 Identities=20% Similarity=0.290 Sum_probs=147.6
Q ss_pred eeEEEEEEeeCCCEEEEEEecCCCcccCCCcEEEEECCCCCCcccccceeecCCCCCeEEEEEEecCCCcHHHHHHhhhc
Q 002830 551 SAKDLKVSVLPGNVLSIVMSKPNGFRYRSGQYIFLQCPTISSFEWHPFSITSAPGDDHLSVHIRIVGDWTHELKQVFTED 630 (875)
Q Consensus 551 ~~~i~~v~~l~~~vl~L~~~~p~~~~ykpGQyvfL~~p~is~~e~HPFTItSaP~dd~lsl~IR~~G~wT~~L~~~~~~~ 630 (875)
.++|+++...++++..++++.| +.|+||||+.|.+|.. ..|||||++. +++.+.|+||..|+.|..|.++
T Consensus 7 ~~~v~~~~~~t~~~~~~~~~~~--~~~~pGQ~v~l~~~~~---~~~pySi~~~-~~~~l~~~Vk~~G~~S~~L~~l---- 76 (261)
T TIGR02911 7 KSEILEIIKHTDIEYTFRMSYD--GPVKPGQFFEVSLPKY---GEAPISVSGI-GEGYIDLTIRRVGKVTDEVFTL---- 76 (261)
T ss_pred eEEEEEEeeccCCEEEEEcCCC--CCCCCCcEEEEEecCC---CccceecCCC-CCCeEEEEEEeCchhhHHHHcC----
Confidence 5677888888999999999765 6799999999999863 3589999985 5788999999999999887642
Q ss_pred ccccccCCccccccCCCCCCCCCEEEEECcCCCC-CCCCCCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhccccCCCcc
Q 002830 631 KDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAA-AQDYSNYDVLLLVGLGIGATPFISILRDLLNNTREELMDSNTDSS 709 (875)
Q Consensus 631 ~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~-~~~~~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~~~~~~~~ 709 (875)
.+| ..|.|.||||.. ..+....+++||||||+||||++|++++++++..
T Consensus 77 -----~~G--------------d~v~i~gP~G~~f~~~~~~~~~~llIAgGtGIaP~~sil~~l~~~~~----------- 126 (261)
T TIGR02911 77 -----KEG--------------DNLFLRGPYGNGFDVDNYKHKELVVVAGGTGVAPVKGVVEYFVKNPK----------- 126 (261)
T ss_pred -----CCC--------------CEEEEecCCCCCcccCccCCceEEEEecccCcHHHHHHHHHHHhCcc-----------
Confidence 234 789999999984 3222346799999999999999999999875421
Q ss_pred cccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCchhhHHHHHHHHHhhcCCCcEEEEEEecccccCCChh
Q 002830 710 RSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPGSFEWFKGVMDQVAEMDLKGQIELHNYLTSVYEEGDAR 789 (875)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~eWf~~~L~el~e~~~~~~iev~~ylT~~~~~~d~r 789 (875)
..++++|+|.+|+.+++ +|.+.|.++++. ..++..+... +.+.+
T Consensus 127 ----------------------------~~~~v~L~~~~r~~~~~-~~~~eL~~l~~~-----~~~~~~~~~~--~~~~~ 170 (261)
T TIGR02911 127 ----------------------------EIKSLNLILGFKTPDDI-LFKEDIAEWKGN-----INLTLTLDEA--EEDYK 170 (261)
T ss_pred ----------------------------cCceEEEEEecCCHHHh-hHHHHHHHHHhc-----CcEEEEEcCC--CCCCc
Confidence 14689999999999987 688888888752 1233323221 11100
Q ss_pred hHHHHHHHhhhcccCCcccccCCeeeeecCCCCHHHHHHHHHhhCCCCeEEEEEeCchHHHHHHHHHHHhhc
Q 002830 790 STLITMVQALNHAKHGVDILSGTRVRTHFARPNWKEVFSRVATKHPNATIGVFYCGMPVLAKELKKLSHELT 861 (875)
Q Consensus 790 s~l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~~~v~~~~~~~~~~~~v~Vf~CGPp~l~~~lr~~~~~~~ 861 (875)
+ ..|+-+ +.+.+.... +.....||+||||.|++++++.+.+.+
T Consensus 171 ---------------------~-----~~g~v~--~~l~~~~~~-~~~~~~v~lCGp~~mv~~~~~~L~~~G 213 (261)
T TIGR02911 171 ---------------------G-----NIGLVT--KYIPELTLK-DIEEVQAIVVGPPIMMKFTVQELLKKG 213 (261)
T ss_pred ---------------------C-----CeeccC--HhHHhccCC-CccceEEEEECCHHHHHHHHHHHHHcC
Confidence 0 112222 122221111 122457999999999999999988754
No 55
>PRK05802 hypothetical protein; Provisional
Probab=99.89 E-value=1.6e-21 Score=215.71 Aligned_cols=150 Identities=21% Similarity=0.335 Sum_probs=122.2
Q ss_pred eeeEEEEEEeeCCCEEEEEEecCCC---cccCCCcEEEEECCCCCCcccccceeecCCC-CCeEEEEEEecCCCcHHHHH
Q 002830 550 FSAKDLKVSVLPGNVLSIVMSKPNG---FRYRSGQYIFLQCPTISSFEWHPFSITSAPG-DDHLSVHIRIVGDWTHELKQ 625 (875)
Q Consensus 550 ~~~~i~~v~~l~~~vl~L~~~~p~~---~~ykpGQyvfL~~p~is~~e~HPFTItSaP~-dd~lsl~IR~~G~wT~~L~~ 625 (875)
+.++|++++.+.+++..+++..|.. ..++||||++|++|..+.+..|||||+++|. ++.++|+||..|..|+.|.+
T Consensus 65 ~~~~I~~~~~~t~dv~~l~l~~p~~~~~~~~~PGQFv~l~~~~~~~~~~rP~SI~~~~~~~g~l~l~ik~~G~~T~~L~~ 144 (320)
T PRK05802 65 YECKIIKKENIEDNLIILTLKVPHKLARDLVYPGSFVFLRNKNSSSFFDVPISIMEADTEENIIKVAIEIRGVKTKKIAK 144 (320)
T ss_pred EeEEEEEEEEecCCEEEEEEECCchhhhccCCCCceEEEEEcCCCCEeEEeeEecccCCCCCEEEEEEEecChhHHHHhc
Confidence 5678899999999999999998754 3479999999999865566789999999975 57899999999999998864
Q ss_pred HhhhcccccccCCccccccCCCCCCCCCEEEEECcCCCCC--C-C--CCCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhh
Q 002830 626 VFTEDKDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAAA--Q-D--YSNYDVLLLVGLGIGATPFISILRDLLNNTREE 700 (875)
Q Consensus 626 ~~~~~~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~~--~-~--~~~yd~vlLVagGiGITP~iSiLkdll~~~~~~ 700 (875)
+ .+| ..+.|.||||... . + ..+.+++|||||||||||+++++++++.+
T Consensus 145 l---------~~G--------------d~l~v~GP~GnG~F~l~~~~~~~~~~~llIaGGiGIaPl~~l~~~l~~~---- 197 (320)
T PRK05802 145 L---------NKG--------------DEILLRGPYWNGILGLKNIKSTKNGKSLVIARGIGQAPGVPVIKKLYSN---- 197 (320)
T ss_pred C---------CCC--------------CEEEEeCCCCcCcCCcccccccCCCeEEEEEeEEeHHHHHHHHHHHHHc----
Confidence 3 344 7899999997642 1 1 12356899999999999999999998754
Q ss_pred ccccCCCcccccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCchhhHHHHHHHHH
Q 002830 701 LMDSNTDSSRSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPGSFEWFKGVMDQVA 765 (875)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~eWf~~~L~el~ 765 (875)
..+++++|..|+.+++ ++.+.+++++
T Consensus 198 --------------------------------------~~~v~li~g~r~~~~~-~~~~el~~~~ 223 (320)
T PRK05802 198 --------------------------------------GNKIIVIIDKGPFKNN-FIKEYLELYN 223 (320)
T ss_pred --------------------------------------CCcEEEEEeCCCHHHH-HHHHHHHHhh
Confidence 1369999999999988 6777776654
No 56
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=99.89 E-value=1.3e-21 Score=213.05 Aligned_cols=199 Identities=21% Similarity=0.326 Sum_probs=144.2
Q ss_pred EEEEEEeeCCCEEEEEEecCC-CcccCCCcEEEEECCCCCCcccccceeecCC-CCCeEEEEEEecCCCcHHHHHHhhhc
Q 002830 553 KDLKVSVLPGNVLSIVMSKPN-GFRYRSGQYIFLQCPTISSFEWHPFSITSAP-GDDHLSVHIRIVGDWTHELKQVFTED 630 (875)
Q Consensus 553 ~i~~v~~l~~~vl~L~~~~p~-~~~ykpGQyvfL~~p~is~~e~HPFTItSaP-~dd~lsl~IR~~G~wT~~L~~~~~~~ 630 (875)
+|++++.+++++..+++..|. ...|+||||+.|+++.. .++|||||+|+| ++++++|+||..|..|+.|.++
T Consensus 3 ~I~~~~~~t~~~~~l~l~~~~~~~~~~pGQfv~l~~~~~--~~~rpySias~~~~~~~i~l~vk~~G~~T~~L~~l---- 76 (281)
T PRK06222 3 KILEKEELAPNVFLMEIEAPRVAKKAKPGQFVIVRIDEK--GERIPLTIADYDREKGTITIVFQAVGKSTRKLAEL---- 76 (281)
T ss_pred EEEEEEEecCCEEEEEEeCchhhccCCCCeEEEEEeCCC--CCceeeEeeEEcCCCCEEEEEEEeCCcHHHHHhcC----
Confidence 567788899999999998775 35799999999999753 357999999976 4678999999999999888643
Q ss_pred ccccccCCccccccCCCCCCCCCEE-EEECcCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhccccCCCcc
Q 002830 631 KDSTYAIGRAEFGQGGTNRRIQPRL-LVDGPYGAAAQDYSNYDVLLLVGLGIGATPFISILRDLLNNTREELMDSNTDSS 709 (875)
Q Consensus 631 ~~~~~~~G~s~~l~~~~~~~~~~~v-~IdGPYG~~~~~~~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~~~~~~~~ 709 (875)
.+| ..+ .|.||||.+.. ...++++|||||||||||++++++++.++
T Consensus 77 -----~~G--------------d~v~~i~GP~G~~~~-~~~~~~~llIaGGiGiaPl~~l~~~l~~~------------- 123 (281)
T PRK06222 77 -----KEG--------------DSILDVVGPLGKPSE-IEKFGTVVCVGGGVGIAPVYPIAKALKEA------------- 123 (281)
T ss_pred -----CCC--------------CEEeeEEcCCCCCcc-cCCCCeEEEEeCcCcHHHHHHHHHHHHHC-------------
Confidence 344 688 59999999754 34467999999999999999999997643
Q ss_pred cccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCchhhHHHHHHHHHhhcCCCcEEEEEEecccccCCChh
Q 002830 710 RSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPGSFEWFKGVMDQVAEMDLKGQIELHNYLTSVYEEGDAR 789 (875)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~eWf~~~L~el~e~~~~~~iev~~ylT~~~~~~d~r 789 (875)
..+++++|..|+.+++ .|.+.+.++++ ++ +++.. ++..
T Consensus 124 -----------------------------~~~v~l~~g~r~~~d~-~~~~el~~~~~-------~~--~v~~~--d~~~- 161 (281)
T PRK06222 124 -----------------------------GNKVITIIGARNKDLL-ILEDEMKAVSD-------EL--YVTTD--DGSY- 161 (281)
T ss_pred -----------------------------CCeEEEEEecCCHHHh-hcHHHHHhhCC-------eE--EEEcC--CCCc-
Confidence 2479999999999987 46665655432 11 22211 1000
Q ss_pred hHHHHHHHhhhcccCCcccccCCeeeeecCCCCHHHHHHHHHhhCCCCeEEEEEeCchHHHHHHHHHHHhhc
Q 002830 790 STLITMVQALNHAKHGVDILSGTRVRTHFARPNWKEVFSRVATKHPNATIGVFYCGMPVLAKELKKLSHELT 861 (875)
Q Consensus 790 s~l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~~~v~~~~~~~~~~~~v~Vf~CGPp~l~~~lr~~~~~~~ 861 (875)
| +.| ...+.+.+....... ...||+|||+.|++.+.+.+.+..
T Consensus 162 ---------------------g-----~~G--~v~~~l~~~~~~~~~-~~~vy~CGP~~M~~~v~~~l~~~g 204 (281)
T PRK06222 162 ---------------------G-----RKG--FVTDVLKELLESGKK-VDRVVAIGPVIMMKFVAELTKPYG 204 (281)
T ss_pred ---------------------C-----ccc--chHHHHHHHhhcCCC-CcEEEEECCHHHHHHHHHHHHhcC
Confidence 0 001 122344443322211 236999999999999999988754
No 57
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=99.87 E-value=5.3e-21 Score=206.84 Aligned_cols=207 Identities=15% Similarity=0.281 Sum_probs=147.1
Q ss_pred CCCEEEEEEecC--CCcccCCCcEEEEECCCCCCcccccceeecCCCC--CeEEEEEEec-----------CCCcHHHHH
Q 002830 561 PGNVLSIVMSKP--NGFRYRSGQYIFLQCPTISSFEWHPFSITSAPGD--DHLSVHIRIV-----------GDWTHELKQ 625 (875)
Q Consensus 561 ~~~vl~L~~~~p--~~~~ykpGQyvfL~~p~is~~e~HPFTItSaP~d--d~lsl~IR~~-----------G~wT~~L~~ 625 (875)
|.+|.+|++..| ..+.|+||||+.|.+|. ...+|||||+|.|++ +.+.|+||.. |..|..|.+
T Consensus 14 ~~~v~~l~l~~~~~~~~~~~pGQ~v~l~~~~--~~~~R~ySias~p~~~~~~l~l~Ik~~~~~~~~~~~~~G~~S~~L~~ 91 (267)
T cd06182 14 PRSTRHLEFDLSGNSVLKYQPGDHLGVIPPN--PLQPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCSNFLAG 91 (267)
T ss_pred CCceEEEEEecCCCCcCccCCCCEEEEecCC--CCCCeeEeecCCCCCCCCEEEEEEEEEEEecCCCCeeccchhHHHhh
Confidence 456999999988 57899999999999885 457899999999964 7999999987 777877764
Q ss_pred HhhhcccccccCCccccccCCCCCCCCCEEEEECcCC-CCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhcccc
Q 002830 626 VFTEDKDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYG-AAAQDYSNYDVLLLVGLGIGATPFISILRDLLNNTREELMDS 704 (875)
Q Consensus 626 ~~~~~~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG-~~~~~~~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~~~ 704 (875)
+ .+| ..+.|.||+| .+..+-...+++|||||||||||++|++++++....+
T Consensus 92 l---------k~G--------------d~v~v~~p~G~~f~l~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~~----- 143 (267)
T cd06182 92 L---------QLG--------------AKVTVFIRPAPSFRLPKDPTTPIIMVGPGTGIAPFRGFLQERAALRAN----- 143 (267)
T ss_pred C---------CCC--------------CEEEEEEecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhc-----
Confidence 2 234 7899999999 6654434467899999999999999999998864211
Q ss_pred CCCcccccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCC-CchhhHHHHHHHHHhhcCCCcEEEEEEecccc
Q 002830 705 NTDSSRSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREP-GSFEWFKGVMDQVAEMDLKGQIELHNYLTSVY 783 (875)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~-~s~eWf~~~L~el~e~~~~~~iev~~ylT~~~ 783 (875)
.....+++|+|.+|+. +++ .|.+.|.++++. ...++++..+++..
T Consensus 144 -------------------------------~~~~~~v~l~~g~r~~~~d~-~~~del~~~~~~--~~~~~~~~~~S~~~ 189 (267)
T cd06182 144 -------------------------------GKARGPAWLFFGCRNFASDY-LYREELQEALKD--GALTRLDVAFSREQ 189 (267)
T ss_pred -------------------------------cccCCCEEEEEeCCCCcccc-cHHHHHHHHHhC--CCcceEEEEEccCC
Confidence 0124689999999999 787 688888888763 33567777666421
Q ss_pred cCCChhhHHHHHHHhhhcccCCcccccCCeeeeecCCCCHHHHHHHHHhhCCCCeEEEEEeCchH-HHHHHHHHHHhhc
Q 002830 784 EEGDARSTLITMVQALNHAKHGVDILSGTRVRTHFARPNWKEVFSRVATKHPNATIGVFYCGMPV-LAKELKKLSHELT 861 (875)
Q Consensus 784 ~~~d~rs~l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~~~v~~~~~~~~~~~~v~Vf~CGPp~-l~~~lr~~~~~~~ 861 (875)
.. .... +.+ . ..-+. +.+.+... ... .||+|||+. |++.+.+.+.++.
T Consensus 190 ~~--~~~~-----------------v~~-----~-l~~~~-~~l~~~l~---~~~-~vyvCGp~~~m~~~v~~~L~~~~ 238 (267)
T cd06182 190 AE--PKVY-----------------VQD-----K-LKEHA-EELRRLLN---EGA-HIYVCGDAKSMAKDVEDALVKII 238 (267)
T ss_pred CC--Ccee-----------------hHH-----H-HHHhH-HHHHHHHh---cCC-EEEEECCcccchHHHHHHHHHHH
Confidence 10 0000 000 0 00000 11111111 112 799999999 9999999998873
No 58
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=99.87 E-value=1.1e-20 Score=202.03 Aligned_cols=151 Identities=17% Similarity=0.239 Sum_probs=114.9
Q ss_pred CEEEEEEecC-CCcccCCCcEEEEECCCCCCcccccceeecCCCCCeEEEEEEecCC-------CcHHHHHHhhhccccc
Q 002830 563 NVLSIVMSKP-NGFRYRSGQYIFLQCPTISSFEWHPFSITSAPGDDHLSVHIRIVGD-------WTHELKQVFTEDKDST 634 (875)
Q Consensus 563 ~vl~L~~~~p-~~~~ykpGQyvfL~~p~is~~e~HPFTItSaP~dd~lsl~IR~~G~-------wT~~L~~~~~~~~~~~ 634 (875)
++.+|++..+ ..+.|+||||+.|.++. ...+|||||+|+|.++.++|+||..++ .|..|.+.+
T Consensus 17 ~v~~l~l~~~~~~~~f~pGQ~v~l~~~~--~~~~R~YSIas~p~~~~l~l~Vk~~~~~~~~~G~~S~~L~~~~------- 87 (245)
T cd06200 17 PLWRLRLTPPDAGAQWQAGDIAEIGPRH--PLPHREYSIASLPADGALELLVRQVRHADGGLGLGSGWLTRHA------- 87 (245)
T ss_pred ceEEEEEecCCCCCCccCCcEEEecCCC--CCCCcceEeccCCCCCEEEEEEEEeccCCCCCeeechhhhhCC-------
Confidence 5999999887 57899999999999864 457899999999988899999999754 677776542
Q ss_pred ccCCccccccCCCCCCCCCEEEEECcCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhccccCCCccccccc
Q 002830 635 YAIGRAEFGQGGTNRRIQPRLLVDGPYGAAAQDYSNYDVLLLVGLGIGATPFISILRDLLNNTREELMDSNTDSSRSASL 714 (875)
Q Consensus 635 ~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~~~~~~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~~~~~~~~~~~~~ 714 (875)
.+| .+|.|.||.|..........++||||||+|||||+|++++++.+.
T Consensus 88 -~~G--------------d~v~i~gp~gg~F~~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~----------------- 135 (245)
T cd06200 88 -PIG--------------ASVALRLRENPGFHLPDDGRPLILIGNGTGLAGLRSHLRARARAG----------------- 135 (245)
T ss_pred -CCC--------------CEEEEEecCCCcccCCCCCCCEEEEecCcChHHHHHHHHHHHhcc-----------------
Confidence 233 789999987643321224578999999999999999999986431
Q ss_pred CcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCC-chhhHHHHHHHHHhhcCCCcEEEEEEecc
Q 002830 715 NSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPG-SFEWFKGVMDQVAEMDLKGQIELHNYLTS 781 (875)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~-s~eWf~~~L~el~e~~~~~~iev~~ylT~ 781 (875)
.+++.+++++|+.+ ++ .|.++++++++.. ....++..+++
T Consensus 136 ------------------------~~~~~l~~g~r~~~~d~-~~~~el~~~~~~~--~~~~~~~~~s~ 176 (245)
T cd06200 136 ------------------------RHRNWLLFGERQAAHDF-FCREELEAWQAAG--HLARLDLAFSR 176 (245)
T ss_pred ------------------------CCCeEEEEecCCccccH-hHHHHHHHHHHCC--CcceEEEEEcc
Confidence 24678999999985 55 5788888876542 33555655554
No 59
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=99.87 E-value=1.5e-20 Score=210.44 Aligned_cols=226 Identities=18% Similarity=0.295 Sum_probs=150.8
Q ss_pred eeEEEEEEee-----CCCEEEEEEecCCCcccCCCcEEEEECCCCC----CcccccceeecCCC-----CCeEEEEEEec
Q 002830 551 SAKDLKVSVL-----PGNVLSIVMSKPNGFRYRSGQYIFLQCPTIS----SFEWHPFSITSAPG-----DDHLSVHIRIV 616 (875)
Q Consensus 551 ~~~i~~v~~l-----~~~vl~L~~~~p~~~~ykpGQyvfL~~p~is----~~e~HPFTItSaP~-----dd~lsl~IR~~ 616 (875)
..+++....+ +++|.+|++..+..+.|+||||+.|.+|... +..++||||+|+|. +++++|+||..
T Consensus 92 ~~~v~~n~~i~~~~~~~~v~~l~l~~~~~~~f~~GQfv~I~~~g~~~~g~p~~~R~YSIAS~p~~~~~~~~~l~L~Vk~~ 171 (367)
T PLN03115 92 TGRCLLNTKITGDDAPGETWHMVFSTEGEIPYREGQSIGVIPDGIDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKRL 171 (367)
T ss_pred EEEEEeecccccCCCCCceEEEEEcCCCCCCcCCCCEEEEEcCCcCCCCCcCceeeeecCCCCcccCCCCCEEEEEEEEE
Confidence 3455544444 3489999998877899999999999987532 34579999999983 35899999964
Q ss_pred -----------CCCcHHHHHHhhhcccccccCCccccccCCCCCCCCCEEEEECcCCCCCCC-CCCCCeEEEEEcCcCHH
Q 002830 617 -----------GDWTHELKQVFTEDKDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAAAQD-YSNYDVLLLVGLGIGAT 684 (875)
Q Consensus 617 -----------G~wT~~L~~~~~~~~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~~~~-~~~yd~vlLVagGiGIT 684 (875)
|-.|..|.++ .+| ..|.|.||+|.+... -....++||||||+|||
T Consensus 172 ~y~~~~g~~~~G~~S~~L~~L---------k~G--------------d~V~v~GP~G~~fllp~~~~~~iImIAgGTGIA 228 (367)
T PLN03115 172 VYTNDQGEIVKGVCSNFLCDL---------KPG--------------AEVKITGPVGKEMLMPKDPNATIIMLATGTGIA 228 (367)
T ss_pred EeecCCCccCCeehHhhHhhC---------CCc--------------CEEEEEeecCCceeCCcCCCCCEEEEeCCeeHH
Confidence 5566666652 234 789999999986432 23345899999999999
Q ss_pred HHHHHHHHHHHhhhhhccccCCCcccccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCchhhHHHHHHHH
Q 002830 685 PFISILRDLLNNTREELMDSNTDSSRSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPGSFEWFKGVMDQV 764 (875)
Q Consensus 685 P~iSiLkdll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~eWf~~~L~el 764 (875)
||+|+|++++...... ....+.++|+|++|+.+++ +|.+.|+++
T Consensus 229 P~rs~L~~~~~~~~~~-----------------------------------~~~~~~v~Lf~G~R~~~dl-ly~dELe~l 272 (367)
T PLN03115 229 PFRSFLWKMFFEKHDD-----------------------------------YKFNGLAWLFLGVPTSSSL-LYKEEFEKM 272 (367)
T ss_pred HHHHHHHHHHhhcccc-----------------------------------ccCCCcEEEEEccCCHHHh-hHHHHHHHH
Confidence 9999999876542100 0013679999999999887 688888887
Q ss_pred HhhcCCCcEEEEEEecccccCCChhhHHHHHHHhhhcccCCcccccCCeeeeecCCCCHHHHHHHHHhhCCCCeEEEEEe
Q 002830 765 AEMDLKGQIELHNYLTSVYEEGDARSTLITMVQALNHAKHGVDILSGTRVRTHFARPNWKEVFSRVATKHPNATIGVFYC 844 (875)
Q Consensus 765 ~e~~~~~~iev~~ylT~~~~~~d~rs~l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~~~v~~~~~~~~~~~~v~Vf~C 844 (875)
++.. ..+++++..+++..+..+ |.+..++ .+ +.+...++....+.....||+|
T Consensus 273 ~~~~-p~~f~v~~a~SR~~~~~~-----------------------G~kgyVq-d~--i~e~~e~l~~~l~~~~~~vYiC 325 (367)
T PLN03115 273 KEKA-PENFRLDFAVSREQTNAK-----------------------GEKMYIQ-TR--MAEYAEELWELLKKDNTYVYMC 325 (367)
T ss_pred HHhC-CCCEEEEEEEcCCCcccC-----------------------Ccceeeh-hH--HHHHHHHHHhhcccCCeEEEEe
Confidence 6642 335888877775321100 1110010 00 0111111111111234579999
Q ss_pred CchHHHHHHHHHHHhhcc
Q 002830 845 GMPVLAKELKKLSHELTH 862 (875)
Q Consensus 845 GPp~l~~~lr~~~~~~~~ 862 (875)
||++|++.+.++..+...
T Consensus 326 Gp~~M~~~V~~~l~~l~~ 343 (367)
T PLN03115 326 GLKGMEKGIDDIMVSLAA 343 (367)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 999999999988876543
No 60
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=99.86 E-value=1.7e-20 Score=206.13 Aligned_cols=221 Identities=13% Similarity=0.224 Sum_probs=154.0
Q ss_pred EeeeeeeEEEEEEeeCCCEEEEEEecCC---CcccCCCcEEEEECCCCCC----cccccceeecCCC-CCeEEEEEEec-
Q 002830 546 RSGHFSAKDLKVSVLPGNVLSIVMSKPN---GFRYRSGQYIFLQCPTISS----FEWHPFSITSAPG-DDHLSVHIRIV- 616 (875)
Q Consensus 546 r~~~~~~~i~~v~~l~~~vl~L~~~~p~---~~~ykpGQyvfL~~p~is~----~e~HPFTItSaP~-dd~lsl~IR~~- 616 (875)
...+..+++++++.+++++..++++.+. .+.|+||||+.|.++.-.. ..+||||++|.|. ++.+.|+||..
T Consensus 30 ~~~~~~~~v~~~~~~s~d~~~~~~~~~~~~~~~~~~pGQfi~l~~~~~~~~~~~~~~R~YS~~s~~~~~~~i~~~Ik~~~ 109 (300)
T PTZ00319 30 PDMFQHFKLIKKTEVTHDTFIFRFALHSPTQRLGLPIGQHIVFRCDCTTPGKPETVQHSYTPISSDDEKGYVDFLIKVYF 109 (300)
T ss_pred cCceEEEEEEEEEEcCCCceEEEEECCCCcccCCCccceEEEEEEEeCCCCccceEEeeeccCCCcccCCEEEEEEEEec
Confidence 3455678899999999999999997643 3679999999999975321 4689999999885 57899999986
Q ss_pred ----------CCCcHHHHHHhhhcccccccCCccccccCCCCCCCCCEEEEECcCCCCCCCC---------------CCC
Q 002830 617 ----------GDWTHELKQVFTEDKDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAAAQDY---------------SNY 671 (875)
Q Consensus 617 ----------G~wT~~L~~~~~~~~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~~~~~---------------~~y 671 (875)
|..|+.|.++ .+| ..|.|.||+|.+...- .+.
T Consensus 110 ~~~~~~~~~~G~~S~~L~~l---------~~G--------------d~v~i~gP~G~f~~~~~~~~~~~~~~~~~~~~~~ 166 (300)
T PTZ00319 110 KGVHPSFPNGGRLSQHLYHM---------KLG--------------DKIEMRGPVGKFEYLGNGTYTVHKGKGGLKTMHV 166 (300)
T ss_pred cCCCCCCCCCCChhhhhhcC---------CCC--------------CEEEEEccceeeEecCCcceeecccccccccccc
Confidence 7788777432 344 7899999999863210 134
Q ss_pred CeEEEEEcCcCHHHHHHHHHHHHHhhhhhccccCCCcccccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCC
Q 002830 672 DVLLLVGLGIGATPFISILRDLLNNTREELMDSNTDSSRSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREP 751 (875)
Q Consensus 672 d~vlLVagGiGITP~iSiLkdll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~ 751 (875)
++++||||||||||++|+++.++.+.. ..++++++|++|+.
T Consensus 167 ~~illIAgGtGIaP~~sml~~l~~~~~---------------------------------------~~~~i~liyg~r~~ 207 (300)
T PTZ00319 167 DAFAMIAGGTGITPMLQIIHAIKKNKE---------------------------------------DRTKVFLVYANQTE 207 (300)
T ss_pred ceEEEEecCcccCHHHHHHHHHHhCCC---------------------------------------CCceEEEEEecCCH
Confidence 689999999999999999999875411 14689999999999
Q ss_pred CchhhHHHHHHHHHhhcCCCcEEEEEEecccccCCChhhHHHHHHHhhhcccCCcccccCCeeeeecCCCCHHHHHHHHH
Q 002830 752 GSFEWFKGVMDQVAEMDLKGQIELHNYLTSVYEEGDARSTLITMVQALNHAKHGVDILSGTRVRTHFARPNWKEVFSRVA 831 (875)
Q Consensus 752 ~s~eWf~~~L~el~e~~~~~~iev~~ylT~~~~~~d~rs~l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~~~v~~~~~ 831 (875)
+++ .|.+.|.++++ ...++++..+++... +.. .| +.||-+-. ++++..
T Consensus 208 ~dl-~~~~eL~~~~~---~~~~~~~~~~~~~~~--~~~--------------------~~-----~~G~v~~~-~l~~~~ 255 (300)
T PTZ00319 208 DDI-LLRKELDEAAK---DPRFHVWYTLDREAT--PEW--------------------KY-----GTGYVDEE-MLRAHL 255 (300)
T ss_pred HHh-hHHHHHHHHhh---CCCEEEEEEECCCCC--CCc--------------------cc-----ccceeCHH-HHHhhc
Confidence 998 57777766443 235777766664211 100 00 11343322 333322
Q ss_pred hhCC-----CCeEEEEEeCchHHHH-HHHHHHHhh
Q 002830 832 TKHP-----NATIGVFYCGMPVLAK-ELKKLSHEL 860 (875)
Q Consensus 832 ~~~~-----~~~v~Vf~CGPp~l~~-~lr~~~~~~ 860 (875)
.... ..+..||+|||+.|++ .+++.+.+.
T Consensus 256 ~~~~~~~~~~~~~~vyiCGp~~mv~~~~~~~L~~~ 290 (300)
T PTZ00319 256 PVPDPQNSGIKKVMALMCGPPPMLQMAVKPNLEKI 290 (300)
T ss_pred CCccccccccCCeEEEEECCHHHHHHHHHHHHHHc
Confidence 1110 0245799999999999 567777764
No 61
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=99.85 E-value=1.1e-19 Score=198.69 Aligned_cols=210 Identities=16% Similarity=0.238 Sum_probs=146.4
Q ss_pred eeeeeEEEEEEeeC----CCEEEEEEecCC-------CcccCCCcEEEEECCCCCCcccccceeecCCCCCeEEEEEEe-
Q 002830 548 GHFSAKDLKVSVLP----GNVLSIVMSKPN-------GFRYRSGQYIFLQCPTISSFEWHPFSITSAPGDDHLSVHIRI- 615 (875)
Q Consensus 548 ~~~~~~i~~v~~l~----~~vl~L~~~~p~-------~~~ykpGQyvfL~~p~is~~e~HPFTItSaP~dd~lsl~IR~- 615 (875)
.+.++++++.+.++ .++..+++..|. ...|+||||+.|..+.. -..|||||+|+|+++.+.|+||.
T Consensus 44 ~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~pGQ~v~v~~~g~--~~~R~YSias~p~~g~l~l~Vk~~ 121 (289)
T cd06201 44 RTKALELVERKDYGAAVQAPTAILRFKPAKRKLSGKGLPSFEAGDLLGILPPGS--DVPRFYSLASSSSDGFLEICVRKH 121 (289)
T ss_pred CccceEEEeeeecCCCCCCccEEEEEeCCCcccccCCCCCcCccCEEEEecCCC--CCCceEecCCCCCCCeEEEEEEeC
Confidence 34667888888877 589999998776 46799999999986642 35799999999988899999997
Q ss_pred -cCCCcHHHHHHhhhcccccccCCccccccCCCCCCCCCEEEEE-CcCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHH
Q 002830 616 -VGDWTHELKQVFTEDKDSTYAIGRAEFGQGGTNRRIQPRLLVD-GPYGAAAQDYSNYDVLLLVGLGIGATPFISILRDL 693 (875)
Q Consensus 616 -~G~wT~~L~~~~~~~~~~~~~~G~s~~l~~~~~~~~~~~v~Id-GPYG~~~~~~~~yd~vlLVagGiGITP~iSiLkdl 693 (875)
.|..|+.|.++ .+| ..|.+. +|+|.+..+ ...+++|||||||||||++|++++.
T Consensus 122 ~~G~~S~~L~~l---------~~G--------------d~v~v~~~~~g~F~~~-~~~~~lvlIAgGtGIaP~~s~l~~~ 177 (289)
T cd06201 122 PGGLCSGYLHGL---------KPG--------------DTIKAFIRPNPSFRPA-KGAAPVILIGAGTGIAPLAGFIRAN 177 (289)
T ss_pred CCccchhhHhhC---------CCc--------------CEEEEEeccCCCccCC-CCCCCEEEEecCcCHHHHHHHHHhh
Confidence 57788888753 344 677776 578887643 4457899999999999999999863
Q ss_pred HHhhhhhccccCCCcccccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCC-chhhHHHHHHHHHhhcCCCc
Q 002830 694 LNNTREELMDSNTDSSRSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPG-SFEWFKGVMDQVAEMDLKGQ 772 (875)
Q Consensus 694 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~-s~eWf~~~L~el~e~~~~~~ 772 (875)
. ..++++|+|++|+.+ ++ .|+++++++++.. ..
T Consensus 178 ~-------------------------------------------~~~~v~L~~g~r~~~~d~-~~~~eL~~l~~~~--~~ 211 (289)
T cd06201 178 A-------------------------------------------ARRPMHLYWGGRDPASDF-LYEDELDQYLADG--RL 211 (289)
T ss_pred h-------------------------------------------ccCCEEEEEEecCcccch-HHHHHHHHHHHcC--CC
Confidence 1 135799999999985 55 6888888886542 23
Q ss_pred EEEEEEecccccCCChhhHHHHHHHhhhcccCCcccccCCeeeeecCCCCHHHHHHHHHhhCCCCeEEEEEeCchHHHHH
Q 002830 773 IELHNYLTSVYEEGDARSTLITMVQALNHAKHGVDILSGTRVRTHFARPNWKEVFSRVATKHPNATIGVFYCGMPVLAKE 852 (875)
Q Consensus 773 iev~~ylT~~~~~~d~rs~l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~~~v~~~~~~~~~~~~v~Vf~CGPp~l~~~ 852 (875)
+.++..+++....+- +. ...|-+...+ ..... ....||+|||+.|++.
T Consensus 212 ~~~~~~~s~~~~~g~---------------------v~------~~l~~~~~~l-~~~~~----~~~~vyiCGp~~M~~~ 259 (289)
T cd06201 212 TQLHTAFSRTPDGAY---------------------VQ------DRLRADAERL-RRLIE----DGAQIMVCGSRAMAQG 259 (289)
T ss_pred ceEEEEECCCCCccc---------------------ch------hHHHHhHHHH-HHHHH----CCcEEEEECCHHHHHH
Confidence 445544443110000 00 0001111111 11111 1246999999999999
Q ss_pred HHHHHHhhc
Q 002830 853 LKKLSHELT 861 (875)
Q Consensus 853 lr~~~~~~~ 861 (875)
+++.+.+.-
T Consensus 260 v~~~L~~i~ 268 (289)
T cd06201 260 VAAVLEEIL 268 (289)
T ss_pred HHHHHHHHH
Confidence 999888754
No 62
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=99.84 E-value=1.4e-19 Score=206.67 Aligned_cols=167 Identities=16% Similarity=0.248 Sum_probs=124.2
Q ss_pred eeeEEEEEEeeC-----CCEEEEEEecCC-CcccCCCcEEEEECCCC----CCcccccceeecCCCC-----CeEEEEEE
Q 002830 550 FSAKDLKVSVLP-----GNVLSIVMSKPN-GFRYRSGQYIFLQCPTI----SSFEWHPFSITSAPGD-----DHLSVHIR 614 (875)
Q Consensus 550 ~~~~i~~v~~l~-----~~vl~L~~~~p~-~~~ykpGQyvfL~~p~i----s~~e~HPFTItSaP~d-----d~lsl~IR 614 (875)
..++|+..+.+. ++|.+|++..+. .+.|+||||+.|.+|.. .+..++||||+|.|++ +.++|+||
T Consensus 143 ~~a~V~~~~~l~~~~~~~~v~~l~L~~~~~~~~~~pGQfv~l~~pg~~~~g~~~~~R~YSIas~~~~~~~~~~~l~l~Vk 222 (411)
T TIGR03224 143 ITATVVGNYRLTDEDASSDIHHIVLDFGSHPFPVLEGQSIGILPPGTDASGKPHYARMYSVASPRNGERPGYNNLALTVK 222 (411)
T ss_pred eEEEEeeeEEccCCCCCCceEEEEEeCCCCcCCccCCcEEEEecCCcCcCCCcCcceeeeecCCCCccCCCCCEEEEEEE
Confidence 446777888884 489999998776 68899999999999853 2346899999998743 47999999
Q ss_pred ec----------CCCcHHHHHHhhhcccccccCCccccccCCCCCCCCCEEEEECcCCCCCC-CCCCCCeEEEEEcCcCH
Q 002830 615 IV----------GDWTHELKQVFTEDKDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAAAQ-DYSNYDVLLLVGLGIGA 683 (875)
Q Consensus 615 ~~----------G~wT~~L~~~~~~~~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~~~-~~~~yd~vlLVagGiGI 683 (875)
.. |-.|+.|.++ .+| .+|.|.||||.... +-....++||||||+||
T Consensus 223 ~v~~~~~g~~~~G~~S~~L~~l---------k~G--------------d~v~v~GP~G~~f~lp~~~~~~lllIagGtGI 279 (411)
T TIGR03224 223 RVTTDHQGNAVRGVASNYLCDL---------KKG--------------DKVQVIGPFGSTFLMPNHPESSIMMICTGTGS 279 (411)
T ss_pred EEEecCCCCcCcccchhHHhcC---------CCc--------------CEEEEEeccCCcccCCCCCCCCEEEEecccCc
Confidence 86 5567777652 234 79999999998542 21224689999999999
Q ss_pred HHHHHHHHHHHHhhhhhccccCCCcccccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCchhhHHHHHHH
Q 002830 684 TPFISILRDLLNNTREELMDSNTDSSRSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPGSFEWFKGVMDQ 763 (875)
Q Consensus 684 TP~iSiLkdll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~eWf~~~L~e 763 (875)
|||+|+++++...... ....+++|+|++|+++++ .|.+.|++
T Consensus 280 AP~~s~l~~~~~~~~~-------------------------------------~~~~~v~L~~G~Rt~~dl-~y~~eL~~ 321 (411)
T TIGR03224 280 APMRAMTERRRRRRDH-------------------------------------GEGGKLMLFFGARTKEEL-PYFGPLQK 321 (411)
T ss_pred HHHHHHHHHHHHHhhc-------------------------------------CCCCCEEEEEecCccccc-hHHHHHHH
Confidence 9999999998764211 124689999999999998 46666776
Q ss_pred HHhhcCCCcEEEEEEecc
Q 002830 764 VAEMDLKGQIELHNYLTS 781 (875)
Q Consensus 764 l~e~~~~~~iev~~ylT~ 781 (875)
+++. .++++..+++
T Consensus 322 l~~~----~~~~~~~~sr 335 (411)
T TIGR03224 322 LPKD----FIDINFAFSR 335 (411)
T ss_pred HHhc----CceEEEEecc
Confidence 6532 2455554443
No 63
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.84 E-value=1.6e-19 Score=193.66 Aligned_cols=203 Identities=23% Similarity=0.398 Sum_probs=149.4
Q ss_pred eeEEEEEEeeCCCEEEEEEecCCC-cccCCCcEEEEECCCCCCcccccceeecCCCC-CeEEEEEEe--cCCCcHHHHHH
Q 002830 551 SAKDLKVSVLPGNVLSIVMSKPNG-FRYRSGQYIFLQCPTISSFEWHPFSITSAPGD-DHLSVHIRI--VGDWTHELKQV 626 (875)
Q Consensus 551 ~~~i~~v~~l~~~vl~L~~~~p~~-~~ykpGQyvfL~~p~is~~e~HPFTItSaP~d-d~lsl~IR~--~G~wT~~L~~~ 626 (875)
..+|.+++.+++++..+.+..|.. +.++||||+.|+.|. ....||||+|.|++ +.+.++|+. .|-.|+.+.++
T Consensus 9 ~~~I~~~~~is~~~~~l~~~~~~~~~~~~pGQfv~l~~~~---~~~~P~si~~~~~~~g~~~l~i~~~~~G~~T~~i~~~ 85 (252)
T COG0543 9 SYKVVEKEEISPDTFLLRLRLPFVALTFKPGQFVMLRVPG---GVRRPYSLASAPDDKGELELHIRVYEVGKVTKYIFGL 85 (252)
T ss_pred ccEEEEEEEecCceEEEEEeccccccccCCCcEEEEEeCC---CcEEEeeeccCCCcCCcEEEEEEEEeCChHHHHHhhc
Confidence 367889999999999999987755 689999999999998 57899999999974 556666655 79899988875
Q ss_pred hhhcccccccCCccccccCCCCCCCCCEEEEECcCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhccccCC
Q 002830 627 FTEDKDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAAAQDYSNYDVLLLVGLGIGATPFISILRDLLNNTREELMDSNT 706 (875)
Q Consensus 627 ~~~~~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~~~~~~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~~~~~ 706 (875)
.+| ..+.|.||||.+...-.....+|+||||+|++|+.++++++..+.
T Consensus 86 ---------k~g--------------d~i~v~GP~G~~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~~~--------- 133 (252)
T COG0543 86 ---------KEG--------------DKIRVRGPLGNGFLREKIGKPVLLIAGGTGIAPLYAIAKELKEKG--------- 133 (252)
T ss_pred ---------cCC--------------CEEEEEcCCCCCccccccCCcEEEEecccCHhHHHHHHHHHHhcC---------
Confidence 123 679999999999754334445999999999999999999997652
Q ss_pred CcccccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCchhhHHHHHHHHHhhcCCCcEEEEEEecccccCC
Q 002830 707 DSSRSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPGSFEWFKGVMDQVAEMDLKGQIELHNYLTSVYEEG 786 (875)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~eWf~~~L~el~e~~~~~~iev~~ylT~~~~~~ 786 (875)
...+|+++|..|+.+++ .+.+.+.++++. +++. +|. +..
T Consensus 134 -------------------------------~~~~V~~~~G~~~~~dl-~~~~el~~~~~~------~~~~-~~~--~~~ 172 (252)
T COG0543 134 -------------------------------DANKVTLLYGARTAKDL-LLLDELEELAEK------EVHP-VTD--DGW 172 (252)
T ss_pred -------------------------------CCceEEEEEeccChhhc-ccHHHHHHhhcC------cEEE-EEC--CCC
Confidence 15789999999999998 455666666532 3333 222 100
Q ss_pred ChhhHHHHHHHhhhcccCCcccccCCeeeeecCCCCH-HHHHHHHHhhCCCCeEEEEEeCchHHHHHHHHHHHhhcc
Q 002830 787 DARSTLITMVQALNHAKHGVDILSGTRVRTHFARPNW-KEVFSRVATKHPNATIGVFYCGMPVLAKELKKLSHELTH 862 (875)
Q Consensus 787 d~rs~l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~-~~v~~~~~~~~~~~~v~Vf~CGPp~l~~~lr~~~~~~~~ 862 (875)
. | .. | .. .++++++... +.-.||+||||.|++.+++.+.+...
T Consensus 173 ~-----------------G---~~--------G--~v~~~~~~~~~~~---~~~~v~~cGp~~M~~~v~~~~~~~g~ 216 (252)
T COG0543 173 K-----------------G---RK--------G--FVTTDVLKELLDL---EVDDVYICGPPAMVKAVREKLKEYGV 216 (252)
T ss_pred C-----------------c---cC--------c--ceeHHHHhhhccc---cCCEEEEECCHHHHHHHHHHHHhcCC
Confidence 0 0 00 1 11 1244443322 23479999999999999999998763
No 64
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.83 E-value=3.9e-19 Score=190.42 Aligned_cols=223 Identities=15% Similarity=0.247 Sum_probs=172.7
Q ss_pred eeeeeEEEEEEeeCCCEEEEEEecCC---CcccCCCcEEEEECCCCCCcccccceeecCCCC-CeEEEEEEec--CCCcH
Q 002830 548 GHFSAKDLKVSVLPGNVLSIVMSKPN---GFRYRSGQYIFLQCPTISSFEWHPFSITSAPGD-DHLSVHIRIV--GDWTH 621 (875)
Q Consensus 548 ~~~~~~i~~v~~l~~~vl~L~~~~p~---~~~ykpGQyvfL~~p~is~~e~HPFTItSaP~d-d~lsl~IR~~--G~wT~ 621 (875)
.++..++.+.+.++.|+-...+..|. .+....|||+++..|-....-.+|||-.|.+.+ +++.+.||.. |-.|+
T Consensus 50 ~~~~~~l~~k~~~shdt~~f~f~lp~~~~~l~lp~g~hv~~~~~i~g~~vvRpYTPvs~~~~~g~~~l~VK~Y~~G~mS~ 129 (286)
T KOG0534|consen 50 SYYPFRLIDKTELSHDTSLFRFVLPSADHVLGLPIGQHVVLKAPIGGKLVVRPYTPVSLDDDKGYFDLVVKVYPKGKMSQ 129 (286)
T ss_pred ceEEEEEEEEEeccCCceeEEEecCCchhccCcccceEEEEEecCCCcEEEEecCCccCccccceEEEEEEeccCCcccH
Confidence 36778888889999998888887774 467899999999999877778999999998876 7999999987 77888
Q ss_pred HHHHHhhhcccccccCCccccccCCCCCCCCCEEEEECcCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhc
Q 002830 622 ELKQVFTEDKDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAAAQDYSNYDVLLLVGLGIGATPFISILRDLLNNTREEL 701 (875)
Q Consensus 622 ~L~~~~~~~~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~~~~~~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~ 701 (875)
.|..+ +.| ..|.+.||.|...-+-.+++++.|||||+|||||+.+++.++.+..
T Consensus 130 ~l~~L---------kiG--------------d~ve~rGP~G~~~~~~~~~~~l~miAgGtGItPmlqii~~il~~~~--- 183 (286)
T KOG0534|consen 130 HLDSL---------KIG--------------DTVEFRGPIGEFKYDPQKAKHLGMIAGGTGITPMLQLIRAILKDPE--- 183 (286)
T ss_pred HHhcC---------CCC--------------CEEEEecCccceEecCCCcceEEEEecccchhhHHHHHHHHhcCCC---
Confidence 88765 344 8999999999976444568999999999999999999999987632
Q ss_pred cccCCCcccccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCchhhHHHHHHHHHhhcCCCcEEEEEEecc
Q 002830 702 MDSNTDSSRSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPGSFEWFKGVMDQVAEMDLKGQIELHNYLTS 781 (875)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~eWf~~~L~el~e~~~~~~iev~~ylT~ 781 (875)
..+++++++++++++++ |++++|+++++.+.. .+.++.+++.
T Consensus 184 ------------------------------------d~tki~lly~N~te~DI-Llr~eL~~la~~~p~-rf~~~y~v~~ 225 (286)
T KOG0534|consen 184 ------------------------------------DTTKISLLYANKTEDDI-LLREELEELASKYPE-RFKVWYVVDQ 225 (286)
T ss_pred ------------------------------------CCcEEEEEEecCCcccc-chHHHHHHHHhhCcc-eEEEEEEEcC
Confidence 26789999999999999 899999999987543 7889988876
Q ss_pred cccCCChhhHHHHHHHhhhcccCCcccccCCeeeeecCCCCHHHHHHHHHhhCCCCeEEEEEeCchHHHHHHHH-HHHhh
Q 002830 782 VYEEGDARSTLITMVQALNHAKHGVDILSGTRVRTHFARPNWKEVFSRVATKHPNATIGVFYCGMPVLAKELKK-LSHEL 860 (875)
Q Consensus 782 ~~~~~d~rs~l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~~~v~~~~~~~~~~~~v~Vf~CGPp~l~~~lr~-~~~~~ 860 (875)
..+..+. .-|+++-+.+-..+....++ .+-|++||||+|++.+.+ .+.++
T Consensus 226 ~~~~w~~----------------------------~~g~It~~~i~~~l~~~~~~-~~~~liCGPp~m~~~~~~~~le~L 276 (286)
T KOG0534|consen 226 PPEIWDG----------------------------SVGFITKDLIKEHLPPPKEG-ETLVLICGPPPMINGAAQGNLEKL 276 (286)
T ss_pred CcccccC----------------------------ccCccCHHHHHhhCCCCCCC-CeEEEEECCHHHHhHHHHHHHHhc
Confidence 5422211 12455555444333333333 688999999999985444 44445
Q ss_pred ccC
Q 002830 861 THR 863 (875)
Q Consensus 861 ~~~ 863 (875)
+.+
T Consensus 277 g~~ 279 (286)
T KOG0534|consen 277 GYN 279 (286)
T ss_pred CCC
Confidence 443
No 65
>PLN02252 nitrate reductase [NADPH]
Probab=99.83 E-value=2.9e-19 Score=219.28 Aligned_cols=223 Identities=15% Similarity=0.246 Sum_probs=162.4
Q ss_pred eeeeeeEEEEEEeeCCCEEEEEEecCCC---cccCCCcEEEEECCCCCCcccccceeecCCC-CCeEEEEEEec------
Q 002830 547 SGHFSAKDLKVSVLPGNVLSIVMSKPNG---FRYRSGQYIFLQCPTISSFEWHPFSITSAPG-DDHLSVHIRIV------ 616 (875)
Q Consensus 547 ~~~~~~~i~~v~~l~~~vl~L~~~~p~~---~~ykpGQyvfL~~p~is~~e~HPFTItSaP~-dd~lsl~IR~~------ 616 (875)
..+..+++++++.++.++..++|..|.. +.++||||++|.++.-+....||||++|.|+ ++++.|+||..
T Consensus 632 ~~~~~~~Lv~k~~lS~d~~~f~f~lp~~~~~lgl~pGQhV~l~~~~~g~~~~R~YSpaS~~~~~g~lel~VK~~~~~~~~ 711 (888)
T PLN02252 632 REKIPCRLVEKISLSHDVRLFRFALPSEDHVLGLPVGKHVFLCATINGKLCMRAYTPTSSDDEVGHFELVIKVYFKNVHP 711 (888)
T ss_pred CceEEEEEEEEEEccCCeEEEEEEECCCcccCCCCCCCEEEEEEecCCeEEEeeeEecccCCCCCEEEEEEEEEeccccC
Confidence 3467788999999999999999987754 5799999999998644445689999999986 47999999986
Q ss_pred -----CCCcHHHHHHhhhcccccccCCccccccCCCCCCCCCEEEEECcCCCCCC--------C--CCCCCeEEEEEcCc
Q 002830 617 -----GDWTHELKQVFTEDKDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAAAQ--------D--YSNYDVLLLVGLGI 681 (875)
Q Consensus 617 -----G~wT~~L~~~~~~~~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~~~--------~--~~~yd~vlLVagGi 681 (875)
|..|+.|.++ .+| ..|.|.||+|.+.. + -...++++|||||+
T Consensus 712 ~~p~gG~~S~~L~~L---------~vG--------------d~V~V~GP~G~f~y~g~G~f~l~~~~~~~~~vvmIAGGs 768 (888)
T PLN02252 712 KFPNGGLMSQYLDSL---------PIG--------------DTIDVKGPLGHIEYAGRGSFLVNGKPKFAKKLAMLAGGT 768 (888)
T ss_pred ccCCCCchhhHHhcC---------CCC--------------CEEEEecCccceeecccceeeeccccccCceEEEEecce
Confidence 6677777542 344 78999999998521 1 12357899999999
Q ss_pred CHHHHHHHHHHHHHhhhhhccccCCCcccccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCchhhHHHHH
Q 002830 682 GATPFISILRDLLNNTREELMDSNTDSSRSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPGSFEWFKGVM 761 (875)
Q Consensus 682 GITP~iSiLkdll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~eWf~~~L 761 (875)
||||++++|++++.+.. ..++++|+|++|+.+++ .|++.|
T Consensus 769 GITPi~silr~ll~~~~---------------------------------------d~t~i~Liyg~Rt~~Di-l~~eEL 808 (888)
T PLN02252 769 GITPMYQVIQAILRDPE---------------------------------------DKTEMSLVYANRTEDDI-LLREEL 808 (888)
T ss_pred ehhHHHHHHHHHHhccC---------------------------------------CCCcEEEEEEECCHHHh-hHHHHH
Confidence 99999999999986521 14689999999999998 688889
Q ss_pred HHHHhhcCCCcEEEEEEecccccCCChhhHHHHHHHhhhcccCCcccccCCeeeeecCCCCHHHHHHHHHhhCCCCeEEE
Q 002830 762 DQVAEMDLKGQIELHNYLTSVYEEGDARSTLITMVQALNHAKHGVDILSGTRVRTHFARPNWKEVFSRVATKHPNATIGV 841 (875)
Q Consensus 762 ~el~e~~~~~~iev~~ylT~~~~~~d~rs~l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~~~v~~~~~~~~~~~~v~V 841 (875)
+++++. ..+.++++..+|....++ ..| ..||.+-. ++++..... .....|
T Consensus 809 ~~la~~-~p~~~~v~~vls~~~~~~----------------------w~g-----~~GrV~~~-ll~~~l~~~-~~~~~v 858 (888)
T PLN02252 809 DRWAAE-HPDRLKVWYVVSQVKREG----------------------WKY-----SVGRVTEA-MLREHLPEG-GDETLA 858 (888)
T ss_pred HHHHHh-CCCCEEEEEEecCCCcCC----------------------CCC-----cCCcCCHH-HHHHhcccC-CCCeEE
Confidence 888764 234688776666421000 001 12555532 444443221 234679
Q ss_pred EEeCchHHHHH-HHHHHHhhcc
Q 002830 842 FYCGMPVLAKE-LKKLSHELTH 862 (875)
Q Consensus 842 f~CGPp~l~~~-lr~~~~~~~~ 862 (875)
|+|||+.|++. ++..+.+...
T Consensus 859 yiCGPp~Mi~~av~~~L~~~G~ 880 (888)
T PLN02252 859 LMCGPPPMIEFACQPNLEKMGY 880 (888)
T ss_pred EEeCCHHHHHHHHHHHHHHcCC
Confidence 99999999995 7778777543
No 66
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=99.82 E-value=4.4e-22 Score=185.15 Aligned_cols=100 Identities=38% Similarity=0.853 Sum_probs=7.4
Q ss_pred eeeEEEEEEeeCCCEEEEEEecCCC-cccCCCcEEEEECCCCC--CcccccceeecCCCCCeEEEEEEecCCCcHHHHHH
Q 002830 550 FSAKDLKVSVLPGNVLSIVMSKPNG-FRYRSGQYIFLQCPTIS--SFEWHPFSITSAPGDDHLSVHIRIVGDWTHELKQV 626 (875)
Q Consensus 550 ~~~~i~~v~~l~~~vl~L~~~~p~~-~~ykpGQyvfL~~p~is--~~e~HPFTItSaP~dd~lsl~IR~~G~wT~~L~~~ 626 (875)
.++++++++.+++++++|++++|.. ++|+||||+||++|.++ .||||||||+|+|+++.++++||..||||++|++.
T Consensus 2 ~~~~~~~v~~~~~~~v~i~i~~~~~~~~~~pGq~v~l~~p~~s~~~~q~HPFTIas~~~~~~i~l~ik~~g~~T~~L~~~ 81 (105)
T PF08022_consen 2 FNVRIASVELLPDDVVEITIPKPSSPFKWKPGQYVFLSFPSISKWFWQWHPFTIASSPEDNSITLIIKARGGWTKRLYEH 81 (105)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcEEEEEEEEcCCCEEEEEEECCCCCCCCCCceEEEEEEcCcCcCcccccccEeeccCCCCEEEEEEEeCCCchHHHHHH
Confidence 3567888999999999999999986 99999999999999999 56999999999999999999999999999999998
Q ss_pred hhhcccccccCCccccccCCCCCCCCCEEEEECcCCCC
Q 002830 627 FTEDKDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAA 664 (875)
Q Consensus 627 ~~~~~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~ 664 (875)
+.+.... . ....++.||||||++
T Consensus 82 ~~~~~~~----~-----------~~~~~v~idGPYG~~ 104 (105)
T PF08022_consen 82 LSESPSK----Q-----------GNRLRVFIDGPYGAP 104 (105)
T ss_dssp ------------------------------TTSTTSHH
T ss_pred Hhhhccc----C-----------CCceEEEEECCCCCC
Confidence 7543100 0 124799999999975
No 67
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=99.80 E-value=3.6e-18 Score=181.41 Aligned_cols=115 Identities=18% Similarity=0.214 Sum_probs=93.4
Q ss_pred EEEEeeCCCEEEEEEecCCC---cccCCCcEEEEECCCCC-------------------CcccccceeecCC-CCCeEEE
Q 002830 555 LKVSVLPGNVLSIVMSKPNG---FRYRSGQYIFLQCPTIS-------------------SFEWHPFSITSAP-GDDHLSV 611 (875)
Q Consensus 555 ~~v~~l~~~vl~L~~~~p~~---~~ykpGQyvfL~~p~is-------------------~~e~HPFTItSaP-~dd~lsl 611 (875)
++++.+++++.+|+++.|.. ..|+||||+.|.+|..+ ...+++|||++.| +++++.|
T Consensus 2 ~~~~~~s~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~YSi~~~~~~~~~l~~ 81 (235)
T cd06193 2 VRVERLTPHMRRITLGGPDLAGFPSDGPDQHVKLLFPDPGQAPPVLPVLGRRRWPPEEPRPVMRTYTVRRFDPEAGELDI 81 (235)
T ss_pred ceeEecCCCEEEEEEecCccccCCCCCCCceEEEEecCCCCCCCCCccccccccCCcccCCcCcccceeEEcCCCCEEEE
Confidence 46778899999999998764 67999999999998643 4678999999986 5789999
Q ss_pred EEEec---CCCcHHHHHHhhhcccccccCCccccccCCCCCCCCCEEEEECcCCCCCCCCCCCCeEEEEEcCcCHHHHHH
Q 002830 612 HIRIV---GDWTHELKQVFTEDKDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAAAQDYSNYDVLLLVGLGIGATPFIS 688 (875)
Q Consensus 612 ~IR~~---G~wT~~L~~~~~~~~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~~~~~~~yd~vlLVagGiGITP~iS 688 (875)
.|+.. |..|+.|.++ .+| ..|.|.||+|.+... ...+.+||||||+||||+++
T Consensus 82 ~v~~~~~~G~~s~~l~~l---------~~G--------------d~v~v~gP~G~~~~~-~~~~~~vlia~GtGi~p~~~ 137 (235)
T cd06193 82 DFVLHGDEGPASRWAASA---------QPG--------------DTLGIAGPGGSFLPP-PDADWYLLAGDETALPAIAA 137 (235)
T ss_pred EEEeCCCCCchHHHHhhC---------CCC--------------CEEEEECCCCCCCCC-CCcceEEEEeccchHHHHHH
Confidence 99877 4456665432 344 899999999998753 34678999999999999999
Q ss_pred HHHHH
Q 002830 689 ILRDL 693 (875)
Q Consensus 689 iLkdl 693 (875)
|++++
T Consensus 138 il~~~ 142 (235)
T cd06193 138 ILEEL 142 (235)
T ss_pred HHHhC
Confidence 99885
No 68
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.79 E-value=3.2e-18 Score=212.71 Aligned_cols=213 Identities=16% Similarity=0.296 Sum_probs=147.9
Q ss_pred eeeeeEEEEEEeeCCCEEEEEEecCCC-cccCCCcEEEEECCCCCCcccccceeecCCC-CCeEEEEEEecCCCcHHHHH
Q 002830 548 GHFSAKDLKVSVLPGNVLSIVMSKPNG-FRYRSGQYIFLQCPTISSFEWHPFSITSAPG-DDHLSVHIRIVGDWTHELKQ 625 (875)
Q Consensus 548 ~~~~~~i~~v~~l~~~vl~L~~~~p~~-~~ykpGQyvfL~~p~is~~e~HPFTItSaP~-dd~lsl~IR~~G~wT~~L~~ 625 (875)
.+..++|+++..+++++..+++..|.. ..|+||||+.|.++..+ +++||||+|.|. ++.++|+||..|..|..|.+
T Consensus 647 ~~~~~~I~~~~~lt~dv~~~~l~~p~~~~~~~PGQFv~L~~~~~g--e~rP~SIas~~~~~g~i~l~Vk~vG~~T~~L~~ 724 (944)
T PRK12779 647 GQIPQTIVGKVQLAGGIVEFTVRAPMVARSAQAGQFVRVLPWEKG--ELIPLTLADWDAEKGTIDLVVQGMGTSSLEINR 724 (944)
T ss_pred cceEEEEEEEEEecCCEEEEEEeCCCccccCCCCceEEEEeCCCC--CEEeEEccCCCCCCCEEEEEEEeeccHHHHHhc
Confidence 356788999999999999999988764 47999999999986433 679999999874 67899999999988876654
Q ss_pred HhhhcccccccCCccccccCCCCCCCCCEEE-EECcCCCCCCC--CCCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhcc
Q 002830 626 VFTEDKDSTYAIGRAEFGQGGTNRRIQPRLL-VDGPYGAAAQD--YSNYDVLLLVGLGIGATPFISILRDLLNNTREELM 702 (875)
Q Consensus 626 ~~~~~~~~~~~~G~s~~l~~~~~~~~~~~v~-IdGPYG~~~~~--~~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~ 702 (875)
+ .+| ..+. |.||||.+... ....+++|||||||||||++|+++.++.+
T Consensus 725 l---------k~G--------------d~l~~I~GPlG~~f~~~~~~~~~~vllIAGGiGIAPl~sl~r~l~~~------ 775 (944)
T PRK12779 725 M---------AIG--------------DAFSGIAGPLGRASELHRYEGNQTVVFCAGGVGLPPVYPIMRAHLRL------ 775 (944)
T ss_pred C---------CCc--------------CEEeeeecCCCCCcCCccccCCCcEEEEEccEeHHHHHHHHHHHHHC------
Confidence 3 344 7885 99999997531 12236899999999999999999988643
Q ss_pred ccCCCcccccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCchhhHHHHHHHHHhhc--CCCcEEEEEEec
Q 002830 703 DSNTDSSRSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPGSFEWFKGVMDQVAEMD--LKGQIELHNYLT 780 (875)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~eWf~~~L~el~e~~--~~~~iev~~ylT 780 (875)
..+|+++|..|+.+++ .+.+.++++.+.. ....++++ +|
T Consensus 776 ------------------------------------g~~V~li~G~Rs~edl-~~~del~~L~~la~~~~~~~~v~--~t 816 (944)
T PRK12779 776 ------------------------------------GNHVTLISGFRAKEFL-FWTGDDERVGKLKAEFGDQLDVI--YT 816 (944)
T ss_pred ------------------------------------CCCEEEEEEeCCHHHh-hhHHHHHHHHHHHHHcCCCeEEE--EE
Confidence 2479999999999886 3444444443322 12234443 33
Q ss_pred ccccCCChhhHHHHHHHhhhcccCCcccccCCeeeeecCCCCHHHHHHHHHhhCC---C-CeEEEEEeCchHHHHHHHHH
Q 002830 781 SVYEEGDARSTLITMVQALNHAKHGVDILSGTRVRTHFARPNWKEVFSRVATKHP---N-ATIGVFYCGMPVLAKELKKL 856 (875)
Q Consensus 781 ~~~~~~d~rs~l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~~~v~~~~~~~~~---~-~~v~Vf~CGPp~l~~~lr~~ 856 (875)
+. .+. .| ..|+.+ +.+.++..+.. + ....||+|||+.|++.+.+.
T Consensus 817 td--dgs----------------------~G-----~~G~Vt--~~l~~ll~~~~~~~~~~~~~Vy~CGP~~Mmkav~~~ 865 (944)
T PRK12779 817 TN--DGS----------------------FG-----VKGFVT--GPLEEMLKANQQGKGRTIAEVIAIGPPLMMRAVSDL 865 (944)
T ss_pred ec--CCC----------------------CC-----CccccC--hHHHHHHHhcccccccCCcEEEEECCHHHHHHHHHH
Confidence 21 100 01 012222 12333322221 1 12369999999999999999
Q ss_pred HHhhc
Q 002830 857 SHELT 861 (875)
Q Consensus 857 ~~~~~ 861 (875)
+.+.+
T Consensus 866 l~~~G 870 (944)
T PRK12779 866 TKPYG 870 (944)
T ss_pred HHHcC
Confidence 98754
No 69
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.79 E-value=4.8e-18 Score=208.75 Aligned_cols=199 Identities=20% Similarity=0.307 Sum_probs=144.6
Q ss_pred EEEEEEeeCCCEEEEEEecCC-CcccCCCcEEEEECCCCCCcccccceeecCCC-CCeEEEEEEecCCCcHHHHHHhhhc
Q 002830 553 KDLKVSVLPGNVLSIVMSKPN-GFRYRSGQYIFLQCPTISSFEWHPFSITSAPG-DDHLSVHIRIVGDWTHELKQVFTED 630 (875)
Q Consensus 553 ~i~~v~~l~~~vl~L~~~~p~-~~~ykpGQyvfL~~p~is~~e~HPFTItSaP~-dd~lsl~IR~~G~wT~~L~~~~~~~ 630 (875)
+|+++..+++++..|++..|. ...++||||+.|+++... ++|||||+|.|. ++.++|+||..|..|+.|.++
T Consensus 3 ~I~~~~~~t~~v~~l~l~~p~~~~~~~pGQFv~l~~~~~~--~~rp~Si~~~~~~~g~i~~~vk~vG~~T~~L~~l---- 76 (752)
T PRK12778 3 KIVEKEIFSEKVFLLEIEAPLIAKSRKPGQFVIVRVGEKG--ERIPLTIADADPEKGTITLVIQEVGLSTTKLCEL---- 76 (752)
T ss_pred EEEEEEEEcCCEEEEEEeCCchhccCCCCeeEEEEeCCCC--CeeEEEeeeeCCCCCEEEEEEEEcCchHHHHhcC----
Confidence 567788899999999998775 357999999999997543 679999999874 678999999999999998753
Q ss_pred ccccccCCccccccCCCCCCCCCEE-EEECcCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhccccCCCcc
Q 002830 631 KDSTYAIGRAEFGQGGTNRRIQPRL-LVDGPYGAAAQDYSNYDVLLLVGLGIGATPFISILRDLLNNTREELMDSNTDSS 709 (875)
Q Consensus 631 ~~~~~~~G~s~~l~~~~~~~~~~~v-~IdGPYG~~~~~~~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~~~~~~~~ 709 (875)
.+| ..+ .|.||||.+... ...+++||||||+||||++++++++..+
T Consensus 77 -----~~G--------------d~v~~v~GP~G~~~~~-~~~~~~llvaGG~GiaPl~~l~~~l~~~------------- 123 (752)
T PRK12778 77 -----NEG--------------DYITDVVGPLGNPSEI-ENYGTVVCAGGGVGVAPMLPIVKALKAA------------- 123 (752)
T ss_pred -----CCC--------------CEeCeEeCCCCCCccC-CCCCeEEEEECCEeHHHHHHHHHHHHHC-------------
Confidence 344 788 699999998653 3457999999999999999999998754
Q ss_pred cccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCchhhHHHHHHHHHhhcCCCcEEEEEEecccccCCChh
Q 002830 710 RSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPGSFEWFKGVMDQVAEMDLKGQIELHNYLTSVYEEGDAR 789 (875)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~eWf~~~L~el~e~~~~~~iev~~ylT~~~~~~d~r 789 (875)
..+++++|..|+.+++ .|.+.+.+++. ++ .+.|. .+..
T Consensus 124 -----------------------------~~~v~l~~g~r~~~~l-~~~~el~~~~~-------~~-~~~t~---dg~~- 161 (752)
T PRK12778 124 -----------------------------GNRVITILGGRSKELI-ILEDEMRESSD-------EV-IIMTD---DGSY- 161 (752)
T ss_pred -----------------------------CCeEEEEeccCCHHHh-hhHHHHHhhcC-------eE-EEEEC---CCCC-
Confidence 2479999999999987 45555555432 11 12221 1100
Q ss_pred hHHHHHHHhhhcccCCcccccCCeeeeecCCCCHHHHHHHHHhhCCCCeEEEEEeCchHHHHHHHHHHHhhc
Q 002830 790 STLITMVQALNHAKHGVDILSGTRVRTHFARPNWKEVFSRVATKHPNATIGVFYCGMPVLAKELKKLSHELT 861 (875)
Q Consensus 790 s~l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~~~v~~~~~~~~~~~~v~Vf~CGPp~l~~~lr~~~~~~~ 861 (875)
| +.|+ ..+++.++.... .....||+|||+.|++.+.+.+.+.+
T Consensus 162 ---------------------g-----~~G~--v~~~l~~~~~~~-~~~~~vy~CGP~~M~~~v~~~l~~~g 204 (752)
T PRK12778 162 ---------------------G-----RKGL--VTDGLEEVIKRE-TKVDKVFAIGPAIMMKFVCLLTKKYG 204 (752)
T ss_pred ---------------------C-----Cccc--HHHHHHHHhhcC-CCCCEEEEECCHHHHHHHHHHHHHcC
Confidence 0 0011 122344433221 11235999999999999999988753
No 70
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.76 E-value=3.9e-17 Score=208.14 Aligned_cols=224 Identities=15% Similarity=0.163 Sum_probs=158.1
Q ss_pred eeeeeeEEEEEE---eeCCCEEEEEEecCCC---cccCCCcEEEEECCCCCCcccccceeecCCCC-CeEEEEEEec-CC
Q 002830 547 SGHFSAKDLKVS---VLPGNVLSIVMSKPNG---FRYRSGQYIFLQCPTISSFEWHPFSITSAPGD-DHLSVHIRIV-GD 618 (875)
Q Consensus 547 ~~~~~~~i~~v~---~l~~~vl~L~~~~p~~---~~ykpGQyvfL~~p~is~~e~HPFTItSaP~d-d~lsl~IR~~-G~ 618 (875)
..|.++++.+++ .++.++..++|..|.. +.|+|||||.|++|.-+.-.+++||++|.|++ +.+.|+||.. |.
T Consensus 912 ~~w~~~~l~~~~~~~~~~~~~~~~~f~lp~~~~~~~~~pGQfv~l~~~~~g~~~~R~YS~~S~p~~~~~i~l~Vr~~~G~ 991 (1167)
T PTZ00306 912 DKWTTVVVREVREGGQFGTGSRVLRFNLPGALQRSGLTLGQFIAIRGDWDGQQLIGYYSPITLPDDLGVISILARGDKGT 991 (1167)
T ss_pred CceEEEEEEEEeccccccCCeEEEEEECCCcccccCCCCCeEEEEEeeeCCeEEEEEeccCCCCCCCCeEEEEEEcCCCh
Confidence 457788888876 4578888888887753 46999999999986433335799999999964 6799999974 77
Q ss_pred CcHHHHHHhhhcccccccCCccccccCCCCCCCCCEEEEECcCCCC----------CCCCCCCCeEEEEEcCcCHHHHHH
Q 002830 619 WTHELKQVFTEDKDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAA----------AQDYSNYDVLLLVGLGIGATPFIS 688 (875)
Q Consensus 619 wT~~L~~~~~~~~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~----------~~~~~~yd~vlLVagGiGITP~iS 688 (875)
.|..|.++ .+| ..|.|.||+|-. ..+-...+++|||||||||||++|
T Consensus 992 ~S~~L~~l---------~~G--------------d~v~v~gp~G~~~~~~p~~~~f~~~~~~~~~ivlIAGGtGItP~~s 1048 (1167)
T PTZ00306 992 LKEWISAL---------RPG--------------DSVEMKACGGLRIERRPADKQFVFRGHVIRKLALIAGGTGVAPMLQ 1048 (1167)
T ss_pred hHHHHhhC---------CCC--------------CEEEEeCCcCccccccCccceeeeccCCCceEEEEECCccHhHHHH
Confidence 88877542 344 789999999831 011134578999999999999999
Q ss_pred HHHHHHHhhhhhccccCCCcccccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCchhhHHHHHHHHHhhc
Q 002830 689 ILRDLLNNTREELMDSNTDSSRSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPGSFEWFKGVMDQVAEMD 768 (875)
Q Consensus 689 iLkdll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~eWf~~~L~el~e~~ 768 (875)
++++++.+... ...++++|+|++|+.+++ +|+++|.++++.
T Consensus 1049 ml~~~l~~~~~-------------------------------------~~~~~i~Llyg~r~~~dl-~~~~eL~~l~~~- 1089 (1167)
T PTZ00306 1049 IIRAALKKPYV-------------------------------------DSIESIRLIYAAEDVSEL-TYRELLESYRKE- 1089 (1167)
T ss_pred HHHHHHhCccc-------------------------------------CCCceEEEEEEeCCHHHh-hHHHHHHHHHHH-
Confidence 99998764210 114689999999999998 688888888764
Q ss_pred CCCcEEEEEEecccccCCChhhHHHHHHHhhhcccCCcccccCCeeeeecCCCCHHHHHHHHHhhCCCCeEEEEEeCchH
Q 002830 769 LKGQIELHNYLTSVYEEGDARSTLITMVQALNHAKHGVDILSGTRVRTHFARPNWKEVFSRVATKHPNATIGVFYCGMPV 848 (875)
Q Consensus 769 ~~~~iev~~ylT~~~~~~d~rs~l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~~~v~~~~~~~~~~~~v~Vf~CGPp~ 848 (875)
.++.+.++..+++..+. . .+ ..||.+-. ++++.... +.....||+|||+.
T Consensus 1090 ~~~~f~~~~~ls~~~~~--w---------------------~~-----~~G~i~~~-~l~~~l~~-~~~~~~vyiCGP~~ 1139 (1167)
T PTZ00306 1090 NPGKFKCHFVLNNPPEG--W---------------------TD-----GVGFVDRA-LLQSALQP-PSKDLLVAICGPPV 1139 (1167)
T ss_pred CCCCEEEEEEECCCCcc--c---------------------CC-----CCCCCCHH-HHHHhcCC-CCCCeEEEEeCCHH
Confidence 23357887766642110 0 00 12443321 33333211 22346799999999
Q ss_pred HHHHHHHHHHhhcc
Q 002830 849 LAKELKKLSHELTH 862 (875)
Q Consensus 849 l~~~lr~~~~~~~~ 862 (875)
|++.+++.+.+...
T Consensus 1140 mv~~v~~~L~~~G~ 1153 (1167)
T PTZ00306 1140 MQRAVKADLLALGY 1153 (1167)
T ss_pred HHHHHHHHHHHcCC
Confidence 99999999988543
No 71
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.73 E-value=1e-16 Score=200.96 Aligned_cols=199 Identities=14% Similarity=0.212 Sum_probs=143.1
Q ss_pred EEEEEEeeCCCEEEEEEecCC-CcccCCCcEEEEECCCCCCcccccceeecCC-CCCeEEEEEEecCCCcHHHHHHhhhc
Q 002830 553 KDLKVSVLPGNVLSIVMSKPN-GFRYRSGQYIFLQCPTISSFEWHPFSITSAP-GDDHLSVHIRIVGDWTHELKQVFTED 630 (875)
Q Consensus 553 ~i~~v~~l~~~vl~L~~~~p~-~~~ykpGQyvfL~~p~is~~e~HPFTItSaP-~dd~lsl~IR~~G~wT~~L~~~~~~~ 630 (875)
+|++...+.+++..+++..|. ...|+|||||.|+++.- -+.+||||++.+ +++.++|+|+..|..|+.|...+
T Consensus 3 ~I~~~~~l~~~~~~l~l~ap~~a~~~~PGQFV~l~~~~~--~errplSIa~~~~~~g~i~l~vk~vG~~T~~L~~~l--- 77 (1006)
T PRK12775 3 SIVRREAFSDTTFLWEVEAPDVAASAEPGHFVMLRLYEG--AERIPLTVADFDRKKGTITMVVQALGKTTREMMTKF--- 77 (1006)
T ss_pred EEEEEEEecCCEEEEEEecCCcccCCCCCeeEEEEeCCC--CeeEEEEecCcCCCCCEEEEEEEecCcHHHHHHhcC---
Confidence 467778889999999998886 46799999999998753 357999999876 45789999999999999986432
Q ss_pred ccccccCCccccccCCCCCCCCCEE-EEECcCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhccccCCCcc
Q 002830 631 KDSTYAIGRAEFGQGGTNRRIQPRL-LVDGPYGAAAQDYSNYDVLLLVGLGIGATPFISILRDLLNNTREELMDSNTDSS 709 (875)
Q Consensus 631 ~~~~~~~G~s~~l~~~~~~~~~~~v-~IdGPYG~~~~~~~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~~~~~~~~ 709 (875)
.+| ..+ .|.||+|.+.. ...++++|||||||||||++|+++.+...
T Consensus 78 -----k~G--------------d~l~~v~GPlG~~~~-~~~~~~vllVaGGiGIAPl~s~~r~l~~~------------- 124 (1006)
T PRK12775 78 -----KAG--------------DTFEDFVGPLGLPQH-IDKAGHVVLVGGGLGVAPVYPQLRAFKEA------------- 124 (1006)
T ss_pred -----CCC--------------CEEeeeecCCCCCCC-CCCCCeEEEEEEhHHHHHHHHHHHHHHhC-------------
Confidence 344 677 69999999864 34567999999999999999999987543
Q ss_pred cccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCchhhHHHHHHHHHhhcCCCcEEEEEEecccccCCChh
Q 002830 710 RSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPGSFEWFKGVMDQVAEMDLKGQIELHNYLTSVYEEGDAR 789 (875)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~eWf~~~L~el~e~~~~~~iev~~ylT~~~~~~d~r 789 (875)
..+++++|..|+.+.+ .+.+.|.++.. + ++++.. |.
T Consensus 125 -----------------------------g~~v~li~g~R~~~~l-~~~del~~~~~-------~--~~v~td----dg- 160 (1006)
T PRK12775 125 -----------------------------GARTTGIIGFRNKDLV-FWEDKFGKYCD-------D--LIVCTD----DG- 160 (1006)
T ss_pred -----------------------------CCcEEEEEeCCChHHc-ccHHHHHhhcC-------c--EEEEEC----CC-
Confidence 2468999999999876 45555544321 1 133321 10
Q ss_pred hHHHHHHHhhhcccCCcccccCCeeeeecCC-CCHHHHHHHHHhhCCCCeEEEEEeCchHHHHHHHHHHHhhcc
Q 002830 790 STLITMVQALNHAKHGVDILSGTRVRTHFAR-PNWKEVFSRVATKHPNATIGVFYCGMPVLAKELKKLSHELTH 862 (875)
Q Consensus 790 s~l~~m~q~l~~~k~g~divsg~rv~~~~gR-Pd~~~v~~~~~~~~~~~~v~Vf~CGPp~l~~~lr~~~~~~~~ 862 (875)
+ .|+ ..+.+.+.++....+ .-.||+|||+.|++.+.+.+++++-
T Consensus 161 s---------------------------~G~~G~vt~~l~~~l~~~~--~d~vy~CGP~~Mm~av~~~~~~~gi 205 (1006)
T PRK12775 161 S---------------------------YGKPGFVTAALKEVCEKDK--PDLVVAIGPLPMMNACVETTRPFGV 205 (1006)
T ss_pred C---------------------------CCCCCChHHHHHHHhccCC--CCEEEEECCHHHHHHHHHHHHHCCC
Confidence 0 011 112234444332211 1259999999999999999987643
No 72
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=99.56 E-value=3.5e-14 Score=160.22 Aligned_cols=188 Identities=17% Similarity=0.224 Sum_probs=123.3
Q ss_pred CcccCCCcEEEEECCCCCCcccccceeecCCC--CCeEEEEEEec----------CCCcHHHHHHhhhcccccccCCccc
Q 002830 574 GFRYRSGQYIFLQCPTISSFEWHPFSITSAPG--DDHLSVHIRIV----------GDWTHELKQVFTEDKDSTYAIGRAE 641 (875)
Q Consensus 574 ~~~ykpGQyvfL~~p~is~~e~HPFTItSaP~--dd~lsl~IR~~----------G~wT~~L~~~~~~~~~~~~~~G~s~ 641 (875)
..++.+|||+-+..| ...++|||+|+|. ++.+.++|+.. |-.|..|.+.. .+|
T Consensus 129 ~~~~~~gq~l~l~~~----~~~R~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~G~~S~~L~~~~--------~~G--- 193 (360)
T cd06199 129 PARLTAEELLDLLRP----LQPRLYSIASSPKAVPDEVHLTVAVVRYESHGRERKGVASTFLADRL--------KEG--- 193 (360)
T ss_pred CCCCCHHHHHHhCcC----CCCcceeeccCcccCCCeEEEEEEEeeecCCCCccceehhHHHHhcC--------CCC---
Confidence 467889999998644 2679999999995 47899999864 55666665532 123
Q ss_pred cccCCCCCCCCCEEEEECcC-CCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhccccCCCcccccccCcCCCC
Q 002830 642 FGQGGTNRRIQPRLLVDGPY-GAAAQDYSNYDVLLLVGLGIGATPFISILRDLLNNTREELMDSNTDSSRSASLNSCTSS 720 (875)
Q Consensus 642 ~l~~~~~~~~~~~v~IdGPY-G~~~~~~~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (875)
.+|.|.||. |.+..+-....++||||+|+|||||+|++++.+...
T Consensus 194 -----------d~v~v~~~~~~~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~----------------------- 239 (360)
T cd06199 194 -----------DTVPVFVQPNPHFRLPEDPDAPIIMVGPGTGIAPFRAFLQEREATG----------------------- 239 (360)
T ss_pred -----------CEEEEEEecCCCcCCCCCCCCCEEEEecCcChHHHHHHHHHHHhcc-----------------------
Confidence 688888755 456543334578999999999999999999876431
Q ss_pred CCCCCCccccCCCCCCCCCceEEEEEEeCCC-CchhhHHHHHHHHHhhcCCCcEEEEEEecccccCCChhhHHHHHHHhh
Q 002830 721 NTSPGSSMIAGGKKKPQRTRNAYFYWVTREP-GSFEWFKGVMDQVAEMDLKGQIELHNYLTSVYEEGDARSTLITMVQAL 799 (875)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~-~s~eWf~~~L~el~e~~~~~~iev~~ylT~~~~~~d~rs~l~~m~q~l 799 (875)
...++.++|++|+. .++ .|.++++++++. ...++++...++... .. ..+|..
T Consensus 240 -----------------~~~~~~L~~G~R~~~~D~-~y~~el~~~~~~--~~~~~~~~a~Sr~~~---~~----~yVq~~ 292 (360)
T cd06199 240 -----------------AKGKNWLFFGERHFATDF-LYQDELQQWLKD--GVLTRLDTAFSRDQA---EK----VYVQDR 292 (360)
T ss_pred -----------------CCCcEEEEEcCCCCccch-hHHHHHHHHHHc--CCCeEEEEEEccCCC---CC----ccHHHH
Confidence 13568999999997 565 688888888754 233556655554211 00 001110
Q ss_pred hcccCCcccccCCeeeeecCCCCHHHHHHHHHhhCCCCeEEEEEeCch-HHHHHHHHHHHhhc
Q 002830 800 NHAKHGVDILSGTRVRTHFARPNWKEVFSRVATKHPNATIGVFYCGMP-VLAKELKKLSHELT 861 (875)
Q Consensus 800 ~~~k~g~divsg~rv~~~~gRPd~~~v~~~~~~~~~~~~v~Vf~CGPp-~l~~~lr~~~~~~~ 861 (875)
- +-+..++.. +.. ....||+|||+ .|.++|++++.+.-
T Consensus 293 l-------------------~~~~~~~~~-~~~----~~~~vYvCG~~~~M~~~V~~~L~~i~ 331 (360)
T cd06199 293 M-------------------REQGAELWA-WLE----EGAHFYVCGDAKRMAKDVDAALLDII 331 (360)
T ss_pred H-------------------HHhHHHHHH-HHh----CCCEEEEECCCccccHHHHHHHHHHH
Confidence 0 001111211 111 12369999999 89999999887754
No 73
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=99.56 E-value=6.4e-14 Score=159.34 Aligned_cols=179 Identities=16% Similarity=0.239 Sum_probs=117.7
Q ss_pred CcccccceeecCCC--CCeEEEEEEec-----------CCCcHHHHHHhhhcccccccCCccccccCCCCCCCCCEEEEE
Q 002830 592 SFEWHPFSITSAPG--DDHLSVHIRIV-----------GDWTHELKQVFTEDKDSTYAIGRAEFGQGGTNRRIQPRLLVD 658 (875)
Q Consensus 592 ~~e~HPFTItSaP~--dd~lsl~IR~~-----------G~wT~~L~~~~~~~~~~~~~~G~s~~l~~~~~~~~~~~v~Id 658 (875)
+.+.+||||+|+|. ++.++++|+.. |-.|+.|.++ .+ ...|.|.
T Consensus 161 ~l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l---------~~--------------Gd~v~v~ 217 (382)
T cd06207 161 LIKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGL---------KV--------------GQRVTVF 217 (382)
T ss_pred CCCCceeeecCCCcCCCCeEEEEEEEEEeeCCCCCeecccHHHHHhhc---------CC--------------CCEEEEE
Confidence 45789999999996 47899999976 4445545432 22 3789999
Q ss_pred CcCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhccccCCCcccccccCcCCCCCCCCCCccccCCCCCCCC
Q 002830 659 GPYGAAAQDYSNYDVLLLVGLGIGATPFISILRDLLNNTREELMDSNTDSSRSASLNSCTSSNTSPGSSMIAGGKKKPQR 738 (875)
Q Consensus 659 GPYG~~~~~~~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (875)
||+|.+..+-....++||||+|+|||||+|++++.....+.. ..
T Consensus 218 ~p~g~F~lp~~~~~plImIa~GtGIAP~rs~l~~~~~~~~~~------------------------------------~~ 261 (382)
T cd06207 218 IKKSSFKLPKDPKKPIIMVGPGTGLAPFRAFLQERAALLAQG------------------------------------PE 261 (382)
T ss_pred EECCcccCCCCCCCCEEEEcCCccHHHHHHHHHHHHHHhhcC------------------------------------cc
Confidence 999987543333568999999999999999999976542110 12
Q ss_pred CceEEEEEEeCCC-CchhhHHHHHHHHHhhcCCCcEEEEEEecccccCCChhhHHHHHHHhhhcccCCcccccCCeeeee
Q 002830 739 TRNAYFYWVTREP-GSFEWFKGVMDQVAEMDLKGQIELHNYLTSVYEEGDARSTLITMVQALNHAKHGVDILSGTRVRTH 817 (875)
Q Consensus 739 ~~rv~f~Wv~R~~-~s~eWf~~~L~el~e~~~~~~iev~~ylT~~~~~~d~rs~l~~m~q~l~~~k~g~divsg~rv~~~ 817 (875)
..++.++|++|+. .++ .|++++.++++. ....+++...++... .+. .+| +
T Consensus 262 ~~~~~L~~G~R~~~~d~-~y~~el~~~~~~--~~~~~~~~a~Srd~~---~~~----yVq-------------------~ 312 (382)
T cd06207 262 IGPVLLYFGCRHEDKDY-LYKEELEEYEKS--GVLTTLGTAFSRDQP---KKV----YVQ-------------------D 312 (382)
T ss_pred CCCEEEEECCCCCCccc-cHHHHHHHHHhC--CCCceEEEEecCCCC---Cce----EhH-------------------H
Confidence 5789999999998 666 688888887753 233566665554211 000 000 0
Q ss_pred cCCCCHHHHHHHHHhhCCCCeEEEEEeCchH-HHHHHHHHHHhhcc
Q 002830 818 FARPNWKEVFSRVATKHPNATIGVFYCGMPV-LAKELKKLSHELTH 862 (875)
Q Consensus 818 ~gRPd~~~v~~~~~~~~~~~~v~Vf~CGPp~-l~~~lr~~~~~~~~ 862 (875)
..+-+...+.+.+. .+...||+|||+. |++++++.+.+...
T Consensus 313 ~l~~~~~~~~~~l~----~~~~~vYvCG~~~~M~~~V~~~L~~~~~ 354 (382)
T cd06207 313 LIRENSDLVYQLLE----EGAGVIYVCGSTWKMPPDVQEAFEEILK 354 (382)
T ss_pred HHHHCHHHHHHHHh----cCCCEEEEECCcccccHHHHHHHHHHHH
Confidence 00111122222221 1223699999998 99999999887643
No 74
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=99.52 E-value=2e-13 Score=155.37 Aligned_cols=190 Identities=14% Similarity=0.230 Sum_probs=121.4
Q ss_pred CCCcEEEEECCCCCCcccccceeecCCC--CCeEEEEEEe------------cCCCcHHHHHHhhhcccccccCCccccc
Q 002830 578 RSGQYIFLQCPTISSFEWHPFSITSAPG--DDHLSVHIRI------------VGDWTHELKQVFTEDKDSTYAIGRAEFG 643 (875)
Q Consensus 578 kpGQyvfL~~p~is~~e~HPFTItSaP~--dd~lsl~IR~------------~G~wT~~L~~~~~~~~~~~~~~G~s~~l 643 (875)
..||++-+. |. .+.|||||+|+|. ++.+.+.|+. .|..|..|.++ .+|
T Consensus 148 ~~~~~l~~~-p~---l~~R~YSIaSsp~~~~~~i~l~v~v~~~~~~~~~~~~~G~~S~~L~~l---------~~G----- 209 (384)
T cd06206 148 PLATFLAML-PP---MRPRQYSISSSPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLSSL---------RPG----- 209 (384)
T ss_pred CHHHHHHhC-cc---cCCcceeeccCccCCCCeEEEEEEEEEeecCCCCceeeeehHHHHhhC---------CCC-----
Confidence 458888775 43 3679999999985 3555555554 45566666542 233
Q ss_pred cCCCCCCCCCEEEEECcCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhccccCCCcccccccCcCCCCCCC
Q 002830 644 QGGTNRRIQPRLLVDGPYGAAAQDYSNYDVLLLVGLGIGATPFISILRDLLNNTREELMDSNTDSSRSASLNSCTSSNTS 723 (875)
Q Consensus 644 ~~~~~~~~~~~v~IdGPYG~~~~~~~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (875)
....+.|.||+|.+..+.....++||||||+|||||+|++++........
T Consensus 210 -------d~v~v~i~~p~g~F~l~~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~----------------------- 259 (384)
T cd06206 210 -------DSIHVSVRPSHSAFRPPSDPSTPLIMIAAGTGLAPFRGFLQERAALLAQG----------------------- 259 (384)
T ss_pred -------CeEEEEEecCCCccCCCCCCCCCEEEEeCCCCcHHHHHHHHHHHHHHhcC-----------------------
Confidence 12344467999988654445678999999999999999999986542110
Q ss_pred CCCccccCCCCCCCCCceEEEEEEeCCC-CchhhHHHHHHHHHhhcCCCcEEEEEEecccccCCChhhHHHHHHHhhhcc
Q 002830 724 PGSSMIAGGKKKPQRTRNAYFYWVTREP-GSFEWFKGVMDQVAEMDLKGQIELHNYLTSVYEEGDARSTLITMVQALNHA 802 (875)
Q Consensus 724 ~~~~~~~~~~~~~~~~~rv~f~Wv~R~~-~s~eWf~~~L~el~e~~~~~~iev~~ylT~~~~~~d~rs~l~~m~q~l~~~ 802 (875)
....++.++|++|+. .++ .|.+++.++++. +.++++..+++..+. ...
T Consensus 260 -------------~~~~~v~L~~G~R~~~~d~-ly~~el~~~~~~---~~~~l~~a~Sr~~~~--~~~------------ 308 (384)
T cd06206 260 -------------RKLAPALLFFGCRHPDHDD-LYRDELEEWEAA---GVVSVRRAYSRPPGG--GCR------------ 308 (384)
T ss_pred -------------CCcCCEEEEEeCCCCCccc-chHHHHHHHHHC---CCeEEEEEecccCCC--CCE------------
Confidence 113679999999999 566 688888888762 457777766642110 000
Q ss_pred cCCcccccCCeeeeecCCCCHHHHHHHHHhhCCCCeEEEEEeCchHHHHHHHHHHHhhcc
Q 002830 803 KHGVDILSGTRVRTHFARPNWKEVFSRVATKHPNATIGVFYCGMPVLAKELKKLSHELTH 862 (875)
Q Consensus 803 k~g~divsg~rv~~~~gRPd~~~v~~~~~~~~~~~~v~Vf~CGPp~l~~~lr~~~~~~~~ 862 (875)
.+.+ .-+-+.+++.+.+ . ....||+|||+.|++++++.+.+...
T Consensus 309 -----yVq~------~i~~~~~~~~~~~-~----~~~~vyiCGp~~M~~~v~~~L~~i~~ 352 (384)
T cd06206 309 -----YVQD------RLWAEREEVWELW-E----QGARVYVCGDGRMAPGVREVLKRIYA 352 (384)
T ss_pred -----echh------hHHhhHHHHHHHH-H----CCcEEEEECCCchHHHHHHHHHHHHH
Confidence 0000 0001111222211 1 13469999999999999999887654
No 75
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=99.51 E-value=1e-13 Score=165.71 Aligned_cols=126 Identities=15% Similarity=0.236 Sum_probs=95.1
Q ss_pred cccCCCcEEEEECCCCCCcccccceeecCCC--CCeEEEEEEec----------CCCcHHHHHHhhhcccccccCCcccc
Q 002830 575 FRYRSGQYIFLQCPTISSFEWHPFSITSAPG--DDHLSVHIRIV----------GDWTHELKQVFTEDKDSTYAIGRAEF 642 (875)
Q Consensus 575 ~~ykpGQyvfL~~p~is~~e~HPFTItSaP~--dd~lsl~IR~~----------G~wT~~L~~~~~~~~~~~~~~G~s~~ 642 (875)
.++.||||+-+..| .+.|||||+|+|. ++.+.|+|+.. |..|..|.+.+ .+|
T Consensus 367 ~~~~~gq~v~ll~~----~~~R~YSIaSsp~~~~~~l~ltV~~v~~~~~~~~~~G~~S~~L~~~l--------~~G---- 430 (597)
T TIGR01931 367 ADLDAEQLISLLRP----LTPRLYSISSSQSEVGDEVHLTVGVVRYQAHGRARLGGASGFLAERL--------KEG---- 430 (597)
T ss_pred CCCCHHHHHHhCcc----cCCceeeeccCcccCCCEEEEEEEEEEecCCCCccccchhHHHHhhC--------CCC----
Confidence 56899999998875 3779999999994 56899999864 77787777633 233
Q ss_pred ccCCCCCCCCCEEEEECcCC-CCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhccccCCCcccccccCcCCCCC
Q 002830 643 GQGGTNRRIQPRLLVDGPYG-AAAQDYSNYDVLLLVGLGIGATPFISILRDLLNNTREELMDSNTDSSRSASLNSCTSSN 721 (875)
Q Consensus 643 l~~~~~~~~~~~v~IdGPYG-~~~~~~~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (875)
..|.|.||.| .+..+-....++||||+|+|||||+|+++++....
T Consensus 431 ----------d~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~------------------------ 476 (597)
T TIGR01931 431 ----------DTVPVYIEPNDNFRLPEDPDTPIIMIGPGTGVAPFRAFMQERAEDG------------------------ 476 (597)
T ss_pred ----------CEEEEEEeeCCcccCCCCCCCCEEEEcCCcCchhHHHHHHHHHHcc------------------------
Confidence 6788887654 55433334468999999999999999999876541
Q ss_pred CCCCCccccCCCCCCCCCceEEEEEEeCC-CCchhhHHHHHHHHHhh
Q 002830 722 TSPGSSMIAGGKKKPQRTRNAYFYWVTRE-PGSFEWFKGVMDQVAEM 767 (875)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~-~~s~eWf~~~L~el~e~ 767 (875)
...++.++|++|+ ..++ .|.+++.++.+.
T Consensus 477 ----------------~~g~~~LffG~R~~~~D~-ly~~El~~~~~~ 506 (597)
T TIGR01931 477 ----------------AKGKNWLFFGNPHFTTDF-LYQVEWQNYLKK 506 (597)
T ss_pred ----------------CCCCEEEEECCCCCCcch-hHHHHHHHHHHc
Confidence 1467899999998 5666 577777766643
No 76
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.48 E-value=9.2e-14 Score=141.44 Aligned_cols=117 Identities=15% Similarity=0.112 Sum_probs=98.5
Q ss_pred cccccccCCCcchHHHHHHHHHHHhccCCCCCcCHHHHhhhh----CCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHH
Q 002830 139 LRFISKTAGASDAEELWRLVESRFESLAEDGLLAREDFGECI----GMVDTKEFAVGIFDALARRRGQKIGKITKEELRE 214 (875)
Q Consensus 139 l~~i~~~~~~~~~~~~w~~v~~~F~~l~~dG~L~~~eF~~~~----g~~~~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~ 214 (875)
+..+...+.... ......++.|...||+|.++.++|.+++ ..++++.|+++||++ +|.++ +|.|+|+||+.
T Consensus 14 ~e~l~~~t~f~~--~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~-fD~~~--dg~i~F~Efi~ 88 (193)
T KOG0044|consen 14 LEQLVQQTKFSK--KEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRT-FDKNK--DGTIDFLEFIC 88 (193)
T ss_pred HHHHHHhcCCCH--HHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHH-hcccC--CCCcCHHHHHH
Confidence 344444445542 3447999999999999999999999995 456788899999997 55466 99999999999
Q ss_pred HHHhhcCCChhhhHHHHHhhhccccceEeeccCCCCccCHHHHHHHHHhccccCC
Q 002830 215 FWLQISDQSFDARLQIFFDIVDELGEFTSYYFPCKRVSHLWQLETLLLQRDTYMN 269 (875)
Q Consensus 215 ~~~~~~~~s~d~kL~~~F~myD~v~eii~l~a~~nG~I~~~el~~ll~~~~~~~~ 269 (875)
+|+++++|+.++||+|+|+||| .|+||+|+++|+-.++.......+
T Consensus 89 als~~~rGt~eekl~w~F~lyD---------~dgdG~It~~Eml~iv~~i~~m~~ 134 (193)
T KOG0044|consen 89 ALSLTSRGTLEEKLKWAFRLYD---------LDGDGYITKEEMLKIVQAIYQMTG 134 (193)
T ss_pred HHHHHcCCcHHHHhhhhheeec---------CCCCceEcHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999 999999999999999987655433
No 77
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=99.43 E-value=2.3e-12 Score=147.32 Aligned_cols=135 Identities=17% Similarity=0.244 Sum_probs=94.0
Q ss_pred CcccccceeecCCCC--CeEEEEEEec-----CCCcHHHHHHhhhcccccccCCccccccCCCCCCCCCEEEEEC-cCCC
Q 002830 592 SFEWHPFSITSAPGD--DHLSVHIRIV-----GDWTHELKQVFTEDKDSTYAIGRAEFGQGGTNRRIQPRLLVDG-PYGA 663 (875)
Q Consensus 592 ~~e~HPFTItSaP~d--d~lsl~IR~~-----G~wT~~L~~~~~~~~~~~~~~G~s~~l~~~~~~~~~~~v~IdG-PYG~ 663 (875)
+.+.|+|||+|+|.. +.++++|+.. |-.|..|.++..+.. .+| ..|.+.| |.|.
T Consensus 171 ~~~~R~YSIsSsp~~~~~~i~l~v~~v~~~~~G~~S~~L~~l~~~~~----~~G--------------~~v~i~~~~~g~ 232 (398)
T cd06203 171 RLQPRPYSIASSPLEGPGKLRFIFSVVEFPAKGLCTSWLESLCLSAS----SHG--------------VKVPFYLRSSSR 232 (398)
T ss_pred cCCCcceeecCCcccCCCeEEEEEEEEEecCCChhhHHHHHhhhhhc----CCC--------------CEEEEEEecCCC
Confidence 357799999999964 7899998875 557888876532110 023 6788888 6776
Q ss_pred CCCCCC-CCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhccccCCCcccccccCcCCCCCCCCCCccccCCCCCCCCCceE
Q 002830 664 AAQDYS-NYDVLLLVGLGIGATPFISILRDLLNNTREELMDSNTDSSRSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNA 742 (875)
Q Consensus 664 ~~~~~~-~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv 742 (875)
+..+.. ...++||||+|+|||||+|++++.....+.. +.....++
T Consensus 233 F~lp~~~~~~piImIa~GtGIAP~rs~lq~~~~~~~~~----------------------------------~~~~~~~~ 278 (398)
T cd06203 233 FRLPPDDLRRPIIMVGPGTGVAPFLGFLQHREKLKESH----------------------------------TETVFGEA 278 (398)
T ss_pred cCCCCcCCCCCEEEEcCCcChHHHHHHHHHHHHHHhhc----------------------------------ccCCCCCE
Confidence 654333 3578999999999999999999876532110 00124679
Q ss_pred EEEEEeCCC-CchhhHHHHHHHHHhhcCCCcEEEEEEecc
Q 002830 743 YFYWVTREP-GSFEWFKGVMDQVAEMDLKGQIELHNYLTS 781 (875)
Q Consensus 743 ~f~Wv~R~~-~s~eWf~~~L~el~e~~~~~~iev~~ylT~ 781 (875)
.+||++|+. .++ .|.++++++++. ....+++..+++
T Consensus 279 ~Lf~G~R~~~~d~-~y~~El~~~~~~--~~~~~~~~a~SR 315 (398)
T cd06203 279 WLFFGCRHRDRDY-LFRDELEEFLEE--GILTRLIVAFSR 315 (398)
T ss_pred EEEEeCCCCCcch-hHHHHHHHHHHc--CCCceEEEEECC
Confidence 999999998 566 588888888754 223445655554
No 78
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=99.43 E-value=6.3e-13 Score=126.60 Aligned_cols=122 Identities=24% Similarity=0.346 Sum_probs=89.2
Q ss_pred HHHHhhHHHHHHHHhhhh-hhhhhccccccccccccchhhHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCccccc
Q 002830 355 AETLKLNMALILLPVCRN-TLTWLRSTRARYFVPFDDNINFHKTIACAIIIGVVLHVGNHLACDFPRLVNSSPEEFAPMS 433 (875)
Q Consensus 355 a~~l~~n~~lill~v~Rn-~lt~Lr~~~l~~~vp~d~~~~fHk~ia~~i~v~~~iH~i~h~~~~f~~l~~~~~~~~~~l~ 433 (875)
|.+...|+++++++++|| .+.++++ +|+|+.+.+|||+|+++++++++|++.|+. ++..... . ..
T Consensus 2 G~~a~~~l~~~~~l~~R~~~l~~~~~------~~~~~~~~~Hr~lg~~~~~~~~~H~~~~~~-~~~~~~~--~-~~---- 67 (125)
T PF01794_consen 2 GILAFALLPLVFLLGLRNSPLARLTG------ISFDRLLRFHRWLGRLAFFLALLHGVLYLI-NWLRFGG--W-DW---- 67 (125)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhh--h-ch----
Confidence 345567888888899998 5655554 699999999999999999999999999984 2211100 0 00
Q ss_pred cccccCCccchhhcccchhHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCccccchHHHHHHHHHHHHHHHHH
Q 002830 434 TQFHNKKPTYKYLLTGVEGVTGIVMVVLMAIAFTLATHKFRKNGVRLPSPFNRLTGFNAFWYSHHLTAIVYILL 507 (875)
Q Consensus 434 ~~f~~~~p~~~~~~~~~~g~tGiv~lvll~il~~~S~~~~Rr~~~~~~~~~~~~~~Ye~F~~~H~L~~i~~ill 507 (875)
..............+|+++++++++++++|.+++||+. +||.|+++|++++++++++
T Consensus 68 ------~~~~~~~~~~~~~~~G~~a~~~l~~l~~tS~~~~R~r~-----------~ye~f~~~H~~~~~~~~l~ 124 (125)
T PF01794_consen 68 ------QEWFNAWLTGPYNLTGIIALLLLLILAVTSFPWIRRRR-----------NYEIFYYLHILFYIAFLLA 124 (125)
T ss_pred ------hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------cHHHHHHHHHHHHHHHHHH
Confidence 00111222333457999999999999999999999443 2999999999998877653
No 79
>PRK06214 sulfite reductase; Provisional
Probab=99.40 E-value=8.3e-12 Score=146.12 Aligned_cols=126 Identities=18% Similarity=0.308 Sum_probs=86.4
Q ss_pred CcccccceeecCCC--CCeEEEEEEec----------CCCcHHHHHHhhhcccccccCCccccccCCCCCCCCCEEEEEC
Q 002830 592 SFEWHPFSITSAPG--DDHLSVHIRIV----------GDWTHELKQVFTEDKDSTYAIGRAEFGQGGTNRRIQPRLLVDG 659 (875)
Q Consensus 592 ~~e~HPFTItSaP~--dd~lsl~IR~~----------G~wT~~L~~~~~~~~~~~~~~G~s~~l~~~~~~~~~~~v~IdG 659 (875)
+.+.|||||+|+|. ++.++|+|+.. |..|+.|.+.+ .+| ....+.+.+
T Consensus 313 ~l~pR~YSISSsP~~~~~~i~ltV~~V~~~~~~~~~~G~~S~~L~~~l--------~~G------------d~V~v~i~~ 372 (530)
T PRK06214 313 PLQPRLYSISSSPKATPGRVSLTVDAVRYEIGSRLRLGVASTFLGERL--------APG------------TRVRVYVQK 372 (530)
T ss_pred CCCcEEEEeccCCcCCCCEEEEEEEEEeeccCCccccchhhHHHHhcC--------CCC------------CEEEEEecC
Confidence 45889999999995 57899999865 55666665432 233 124555567
Q ss_pred cCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhccccCCCcccccccCcCCCCCCCCCCccccCCCCCCCCC
Q 002830 660 PYGAAAQDYSNYDVLLLVGLGIGATPFISILRDLLNNTREELMDSNTDSSRSASLNSCTSSNTSPGSSMIAGGKKKPQRT 739 (875)
Q Consensus 660 PYG~~~~~~~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (875)
|+| +..+......+||||+|+|||||+|+|++.+... ..
T Consensus 373 ~~g-F~lp~~~~~PiImIg~GTGIAPfrsfLq~r~~~~----------------------------------------~~ 411 (530)
T PRK06214 373 AHG-FALPADPNTPIIMVGPGTGIAPFRAFLHERAATK----------------------------------------AP 411 (530)
T ss_pred CCC-CccCCCCCCCEEEEcCCeeHHHHHHHHHHHHHhc----------------------------------------CC
Confidence 777 5443334468999999999999999999865431 13
Q ss_pred ceEEEEEEeCCC-CchhhHHHHHHHHHhhcCCCcEEEEEEecc
Q 002830 740 RNAYFYWVTREP-GSFEWFKGVMDQVAEMDLKGQIELHNYLTS 781 (875)
Q Consensus 740 ~rv~f~Wv~R~~-~s~eWf~~~L~el~e~~~~~~iev~~ylT~ 781 (875)
.++.++|++|.. .++ .|.++++++.+. .....++...++
T Consensus 412 g~~~LffG~R~~~~D~-ly~dEL~~l~~~--g~l~~l~~afSR 451 (530)
T PRK06214 412 GRNWLFFGHQRSATDF-FYEDELNGLKAA--GVLTRLSLAWSR 451 (530)
T ss_pred CCeEEEEEecCChhhh-HHHHHHHHHHHh--CCceEEEEEEec
Confidence 567999999665 455 688888888754 222345555554
No 80
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=99.38 E-value=1e-11 Score=142.77 Aligned_cols=198 Identities=16% Similarity=0.243 Sum_probs=116.3
Q ss_pred CcccccceeecCCC--CCeEEEEEEec-----------CCCcHHHHHHhhhcccccccCCccccccCCCCCCCCCEEEEE
Q 002830 592 SFEWHPFSITSAPG--DDHLSVHIRIV-----------GDWTHELKQVFTEDKDSTYAIGRAEFGQGGTNRRIQPRLLVD 658 (875)
Q Consensus 592 ~~e~HPFTItSaP~--dd~lsl~IR~~-----------G~wT~~L~~~~~~~~~~~~~~G~s~~l~~~~~~~~~~~v~Id 658 (875)
+.+.++|||+|+|. .+.++|.|+.. |--|.-|.+........++++. .++...........|.+.
T Consensus 175 ~~~pR~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~v~v~ 252 (416)
T cd06204 175 RLQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPPTP--YYLSGPRKKGGGSKVPVF 252 (416)
T ss_pred cCCCcceeeccCccCCCCEEEEEEEEEEeeCCCCCEEeeeehHHHHhhhhhhcccccccc--cccccccccCCCCeEEEE
Confidence 45789999999995 46788887754 5456666654321000000000 000000000024678888
Q ss_pred CcCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhccccCCCcccccccCcCCCCCCCCCCccccCCCCCCCC
Q 002830 659 GPYGAAAQDYSNYDVLLLVGLGIGATPFISILRDLLNNTREELMDSNTDSSRSASLNSCTSSNTSPGSSMIAGGKKKPQR 738 (875)
Q Consensus 659 GPYG~~~~~~~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (875)
+|.|.+..+-....++||||||+|||||+|++++.+...+.. ..
T Consensus 253 ~~~g~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~------------------------------------~~ 296 (416)
T cd06204 253 VRRSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKESG------------------------------------KK 296 (416)
T ss_pred EecCCCCCCCCCCCCEEEEeCCcchHHHHHHHHHHHHHhhcc------------------------------------Cc
Confidence 898987543344578999999999999999999876442110 11
Q ss_pred CceEEEEEEeCCC-CchhhHHHHHHHHHhhcCCCcEEEEEEecccccCCChhhHHHHHHHhhhcccCCcccccCCeeeee
Q 002830 739 TRNAYFYWVTREP-GSFEWFKGVMDQVAEMDLKGQIELHNYLTSVYEEGDARSTLITMVQALNHAKHGVDILSGTRVRTH 817 (875)
Q Consensus 739 ~~rv~f~Wv~R~~-~s~eWf~~~L~el~e~~~~~~iev~~ylT~~~~~~d~rs~l~~m~q~l~~~k~g~divsg~rv~~~ 817 (875)
..++.|+|++|+. .++ .|.++++++++. ...+.++..+++..+ ... .+|.. +
T Consensus 297 ~~~v~L~~G~R~~~~d~-ly~~el~~~~~~--~~~~~l~~a~Sr~~~---~k~----yVq~~---------i-------- 349 (416)
T cd06204 297 VGPTLLFFGCRHPDEDF-IYKDELEEYAKL--GGLLELVTAFSREQP---KKV----YVQHR---------L-------- 349 (416)
T ss_pred cCCEEEEEcCCCCCccc-chHHHHHHHHHc--CCceEEEEEECcCCC---CCc----chHHH---------H--------
Confidence 4679999999998 566 578888887763 234666665554211 000 00100 0
Q ss_pred cCCCCHHHHHHHHHhhCCCCeEEEEEeCchH-HHHHHHHHHHhhc
Q 002830 818 FARPNWKEVFSRVATKHPNATIGVFYCGMPV-LAKELKKLSHELT 861 (875)
Q Consensus 818 ~gRPd~~~v~~~~~~~~~~~~v~Vf~CGPp~-l~~~lr~~~~~~~ 861 (875)
+-+..++.+.+. +...||+|||+. |++++++.+.+.-
T Consensus 350 --~~~~~~~~~~l~-----~~~~vYvCGp~~~M~~~V~~~L~~i~ 387 (416)
T cd06204 350 --AEHAEQVWELIN-----EGAYIYVCGDAKNMARDVEKTLLEIL 387 (416)
T ss_pred --HHhHHHHHHHHH-----cCCEEEEECCcccchHHHHHHHHHHH
Confidence 001112222121 124699999998 9999999887754
No 81
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=99.37 E-value=1.7e-11 Score=140.42 Aligned_cols=182 Identities=15% Similarity=0.206 Sum_probs=108.9
Q ss_pred cccccceeecCCC--CCeEEEEEEec-------------CCCcHHHHHHhhhcccccccCCccccccCCCCCCCCCEEEE
Q 002830 593 FEWHPFSITSAPG--DDHLSVHIRIV-------------GDWTHELKQVFTEDKDSTYAIGRAEFGQGGTNRRIQPRLLV 657 (875)
Q Consensus 593 ~e~HPFTItSaP~--dd~lsl~IR~~-------------G~wT~~L~~~~~~~~~~~~~~G~s~~l~~~~~~~~~~~v~I 657 (875)
.+.+||||+|+|. ++.+.+.|+.. |-.|+.|.++ .+| ..|.|
T Consensus 175 l~pR~YSIsSsp~~~~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~L~~l---------~~G--------------d~v~v 231 (406)
T cd06202 175 LQPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGL---------TPG--------------DTVPC 231 (406)
T ss_pred cCCcccccCCCccCCCCeEEEEEEEEEEECCCCCCCcccccHHHHHHhC---------CCC--------------CEEEE
Confidence 4679999999995 46677777653 4455555432 233 56777
Q ss_pred ECcCC-CCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhccccCCCcccccccCcCCCCCCCCCCccccCCCCCC
Q 002830 658 DGPYG-AAAQDYSNYDVLLLVGLGIGATPFISILRDLLNNTREELMDSNTDSSRSASLNSCTSSNTSPGSSMIAGGKKKP 736 (875)
Q Consensus 658 dGPYG-~~~~~~~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (875)
.+|.| .+..+-....++||||+|+|||||+|+|++.....++.. ...
T Consensus 232 ~~~~~~~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~--------------------------------~~~ 279 (406)
T cd06202 232 FVRSAPSFHLPEDPSVPVIMVGPGTGIAPFRSFWQQRQYDLRMSE--------------------------------DPG 279 (406)
T ss_pred EEeeCCccCCCCCCCCCEEEEcCCcChHHHHHHHHHHHHHhhhcc--------------------------------ccc
Confidence 66433 343322344689999999999999999998754321000 000
Q ss_pred CCCceEEEEEEeCCC-CchhhHHHHHHHHHhhcCCCcEEEEEEecccccCCChhhHHHHHHHhhhcccCCcccccCCeee
Q 002830 737 QRTRNAYFYWVTREP-GSFEWFKGVMDQVAEMDLKGQIELHNYLTSVYEEGDARSTLITMVQALNHAKHGVDILSGTRVR 815 (875)
Q Consensus 737 ~~~~rv~f~Wv~R~~-~s~eWf~~~L~el~e~~~~~~iev~~ylT~~~~~~d~rs~l~~m~q~l~~~k~g~divsg~rv~ 815 (875)
....++.+++++|+. .++ .|+++++++.+. ....+++..+++... +.+ ..+|..-
T Consensus 280 ~~~g~v~L~~G~R~~~~d~-ly~~El~~~~~~--~~~~~~~~a~SR~~~--~~k----~yVq~~l--------------- 335 (406)
T cd06202 280 KKFGDMTLFFGCRNSTIDD-IYKEETEEAKNK--GVLTEVYTALSREPG--KPK----TYVQDLL--------------- 335 (406)
T ss_pred CCCCCEEEEEcCCCCCccc-chHHHHHHHHHc--CCCceEEEEEcCCCC--CCC----eehhhHH---------------
Confidence 124689999999999 565 578888887653 233456666664211 000 0011000
Q ss_pred eecCCCCHHHHHHHHHhhCCCCeEEEEEeCchHHHHHHHHHHHhhc
Q 002830 816 THFARPNWKEVFSRVATKHPNATIGVFYCGMPVLAKELKKLSHELT 861 (875)
Q Consensus 816 ~~~gRPd~~~v~~~~~~~~~~~~v~Vf~CGPp~l~~~lr~~~~~~~ 861 (875)
+-+-.++.+-+.. ....||+|||+.|++++++.+.+.-
T Consensus 336 ----~~~~~~v~~~l~~----~~~~iYvCG~~~M~~~V~~~L~~i~ 373 (406)
T cd06202 336 ----KEQAESVYDALVR----EGGHIYVCGDVTMAEDVSQTIQRIL 373 (406)
T ss_pred ----HHhHHHHHHHHHh----CCCEEEEeCCCchHHHHHHHHHHHH
Confidence 0011112221111 1346999999999999999877643
No 82
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=99.31 E-value=2.8e-11 Score=144.34 Aligned_cols=126 Identities=13% Similarity=0.217 Sum_probs=89.3
Q ss_pred cccCCCcEEEEECCCCCCcccccceeecCCC--CCeEEEEEEec----------CCCcHHHHHHhhhcccccccCCcccc
Q 002830 575 FRYRSGQYIFLQCPTISSFEWHPFSITSAPG--DDHLSVHIRIV----------GDWTHELKQVFTEDKDSTYAIGRAEF 642 (875)
Q Consensus 575 ~~ykpGQyvfL~~p~is~~e~HPFTItSaP~--dd~lsl~IR~~----------G~wT~~L~~~~~~~~~~~~~~G~s~~ 642 (875)
.++.+|||+-+..| .+.+||||+|+|. ++.+.+.|+.. |..|..|.+.+ .+
T Consensus 370 ~~~~~~q~l~ll~~----l~pR~YSIaSsp~~~~~~v~ltv~~v~~~~~g~~~~G~~S~~L~~~l--------~~----- 432 (600)
T PRK10953 370 AQLDAEQLIGLLRP----LTPRLYSIASSQAEVENEVHITVGVVRYDIEGRARAGGASSFLADRL--------EE----- 432 (600)
T ss_pred CCCCHHHHHHhCCC----CCCeeeecccCCCCCCCeEEEEEEEEEeecCCCCcCceEhhhhhhcC--------CC-----
Confidence 35789999988765 3679999999995 35666665432 33344443221 12
Q ss_pred ccCCCCCCCCCEEEEECcCC-CCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhccccCCCcccccccCcCCCCC
Q 002830 643 GQGGTNRRIQPRLLVDGPYG-AAAQDYSNYDVLLLVGLGIGATPFISILRDLLNNTREELMDSNTDSSRSASLNSCTSSN 721 (875)
Q Consensus 643 l~~~~~~~~~~~v~IdGPYG-~~~~~~~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (875)
..+|.|.||.| .+..+.....++||||+|+|||||.|++++.....
T Consensus 433 ---------Gd~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~------------------------ 479 (600)
T PRK10953 433 ---------EGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADG------------------------ 479 (600)
T ss_pred ---------CCEEEEEeccCCcccCCCCCCCCEEEEecCcCcHHHHHHHHHHHHcC------------------------
Confidence 36899999886 45433344578999999999999999999875431
Q ss_pred CCCCCccccCCCCCCCCCceEEEEEEeCC-CCchhhHHHHHHHHHhh
Q 002830 722 TSPGSSMIAGGKKKPQRTRNAYFYWVTRE-PGSFEWFKGVMDQVAEM 767 (875)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~-~~s~eWf~~~L~el~e~ 767 (875)
...++.|+|++|+ ..++ .|+++++++.+.
T Consensus 480 ----------------~~~~~~LffG~R~~~~D~-lY~~El~~~~~~ 509 (600)
T PRK10953 480 ----------------APGKNWLFFGNPHFTEDF-LYQVEWQRYVKE 509 (600)
T ss_pred ----------------CCCCeEEEeeccCCccch-hHHHHHHHHHHc
Confidence 1357899999998 5566 688888887654
No 83
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=99.29 E-value=1.9e-11 Score=113.46 Aligned_cols=107 Identities=23% Similarity=0.444 Sum_probs=71.1
Q ss_pred EEEcCcCHHHHHHHHHHHHHhhhhhccccCCCcccccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCchh
Q 002830 676 LVGLGIGATPFISILRDLLNNTREELMDSNTDSSRSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPGSFE 755 (875)
Q Consensus 676 LVagGiGITP~iSiLkdll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~e 755 (875)
|||||+||||++|+++.++.+. ..++++++|++|+.+++
T Consensus 1 lIagGtGIaP~~s~l~~~~~~~----------------------------------------~~~~v~l~~~~r~~~~~- 39 (109)
T PF00175_consen 1 LIAGGTGIAPFLSMLRYLLERN----------------------------------------DNRKVTLFYGARTPEDL- 39 (109)
T ss_dssp EEEEGGGGHHHHHHHHHHHHHT----------------------------------------CTSEEEEEEEESSGGGS-
T ss_pred CeecceeHHHHHHHHHHHHHhC----------------------------------------CCCCEEEEEEEcccccc-
Confidence 7999999999999999998771 25899999999999998
Q ss_pred hHHHHHHHHHhhcCCCcEEEEEEecccccCCChhhHHHHHHHhhhcccCCcccccCCeeeeecCCCCHHHHH-HHHHh-h
Q 002830 756 WFKGVMDQVAEMDLKGQIELHNYLTSVYEEGDARSTLITMVQALNHAKHGVDILSGTRVRTHFARPNWKEVF-SRVAT-K 833 (875)
Q Consensus 756 Wf~~~L~el~e~~~~~~iev~~ylT~~~~~~d~rs~l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~~~v~-~~~~~-~ 833 (875)
.|.+.+.++++.... .+.+.. +.....++. .+.|| +.+.+ ++... .
T Consensus 40 ~~~~~l~~~~~~~~~-~~~~~~--~~~~~~~~~---------------------------~~~g~--v~~~~~~~~~~~~ 87 (109)
T PF00175_consen 40 LFRDELEALAQEYPN-RFHVVY--VSSPDDGWD---------------------------GFKGR--VTDLLLEDLLPEK 87 (109)
T ss_dssp TTHHHHHHHHHHSTT-CEEEEE--ETTTTSSTT---------------------------SEESS--HHHHHHHHHHHHH
T ss_pred cchhHHHHHHhhccc-cccccc--ccccccccC---------------------------Cceee--hhHHHHHhhcccc
Confidence 688889988876433 233332 211111000 01122 22233 33332 2
Q ss_pred CCCCeEEEEEeCchHHHHHHHH
Q 002830 834 HPNATIGVFYCGMPVLAKELKK 855 (875)
Q Consensus 834 ~~~~~v~Vf~CGPp~l~~~lr~ 855 (875)
.......||+|||++|++++++
T Consensus 88 ~~~~~~~v~iCGp~~m~~~v~~ 109 (109)
T PF00175_consen 88 IDPDDTHVYICGPPPMMKAVRK 109 (109)
T ss_dssp HCTTTEEEEEEEEHHHHHHHHH
T ss_pred cCCCCCEEEEECCHHHHHHhcC
Confidence 2234578999999999999875
No 84
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.29 E-value=1.4e-11 Score=121.61 Aligned_cols=101 Identities=16% Similarity=0.236 Sum_probs=91.2
Q ss_pred HHHHHHHHHHhccC--CCCCcCHHHHhhhh---CCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhc-CCChhh
Q 002830 153 ELWRLVESRFESLA--EDGLLAREDFGECI---GMVDTKEFAVGIFDALARRRGQKIGKITKEELREFWLQIS-DQSFDA 226 (875)
Q Consensus 153 ~~w~~v~~~F~~l~--~dG~L~~~eF~~~~---g~~~~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~~-~~s~d~ 226 (875)
++.+++.++|..+| .+|.|+++||+.++ |..+++.++.+||+.++. | .+.|+|.||+.+++... ..+.++
T Consensus 17 ~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~--~--~~~idf~~Fl~~ms~~~~~~~~~E 92 (160)
T COG5126 17 EQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA--G--NETVDFPEFLTVMSVKLKRGDKEE 92 (160)
T ss_pred HHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC--C--CCccCHHHHHHHHHHHhccCCcHH
Confidence 68899999999999 69999999999996 889999999999997554 4 89999999999998855 778899
Q ss_pred hHHHHHhhhccccceEeeccCCCCccCHHHHHHHHHhccc
Q 002830 227 RLQIFFDIVDELGEFTSYYFPCKRVSHLWQLETLLLQRDT 266 (875)
Q Consensus 227 kL~~~F~myD~v~eii~l~a~~nG~I~~~el~~ll~~~~~ 266 (875)
+|+++|++|| .|.+|||+..||..+++.+..
T Consensus 93 el~~aF~~fD---------~d~dG~Is~~eL~~vl~~lge 123 (160)
T COG5126 93 ELREAFKLFD---------KDHDGYISIGELRRVLKSLGE 123 (160)
T ss_pred HHHHHHHHhC---------CCCCceecHHHHHHHHHhhcc
Confidence 9999999999 999999999999999986643
No 85
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.28 E-value=3.8e-11 Score=125.43 Aligned_cols=216 Identities=19% Similarity=0.381 Sum_probs=142.9
Q ss_pred EEEEEEecCC--CcccCCCcEEEEECCCCC----Cc----c---------------------cccceeecCCCC-CeEEE
Q 002830 564 VLSIVMSKPN--GFRYRSGQYIFLQCPTIS----SF----E---------------------WHPFSITSAPGD-DHLSV 611 (875)
Q Consensus 564 vl~L~~~~p~--~~~ykpGQyvfL~~p~is----~~----e---------------------~HPFTItSaP~d-d~lsl 611 (875)
+-+|.+..|+ ...++||-|+.|.+|.-. -| | -+.||++|.|++ +.+.+
T Consensus 149 IKEL~laip~g~~vpFraGGyiQie~pph~v~y~Dfdi~~eY~~DWdkf~lf~~vs~v~e~~~rAYSmAsYPeE~giI~~ 228 (410)
T COG2871 149 IKELKLAIPEGEEVPFRAGGYIQIEAPPHTVNYKDFDIPPEYHEDWDKFNLFRYVSKVDEPIIRAYSMASYPEEKGIIKL 228 (410)
T ss_pred hhhheeeCCCCCccccCCCceEEEecCCccccccccCCChhHhcchhhhchheeeccccHHHHHHhhhhcChhhcCeEEE
Confidence 4456666665 567999999999998521 11 1 246888898875 56778
Q ss_pred EEEecCCCcHHHHHHhhhcccccccCCc-cccccCCCCCCCCCEEEEECcCCCCCCCCCCCCeEEEEEcCcCHHHHHHHH
Q 002830 612 HIRIVGDWTHELKQVFTEDKDSTYAIGR-AEFGQGGTNRRIQPRLLVDGPYGAAAQDYSNYDVLLLVGLGIGATPFISIL 690 (875)
Q Consensus 612 ~IR~~G~wT~~L~~~~~~~~~~~~~~G~-s~~l~~~~~~~~~~~v~IdGPYG~~~~~~~~yd~vlLVagGiGITP~iSiL 690 (875)
-||..-.-- . .+..++|+ |.+.-.. +..+||.|.||||.+.. -.....+|+|+||.|.+|+.|-+
T Consensus 229 NvRIAtPPp-------~---~~~~PpG~mSSyi~sL---KpGDKvtisGPfGEfFa-KdtdaemvFigGGAGmapmRSHI 294 (410)
T COG2871 229 NVRIATPPP-------R---NPDAPPGQMSSYIWSL---KPGDKVTISGPFGEFFA-KDTDAEMVFIGGGAGMAPMRSHI 294 (410)
T ss_pred EEEeccCCC-------C---CCCCCccceeeeEEee---cCCCeEEEeccchhhhh-ccCCCceEEEecCcCcCchHHHH
Confidence 887653200 0 00013342 1111111 34689999999999853 24456799999999999999999
Q ss_pred HHHHHhhhhhccccCCCcccccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEeCCCCchhhHHHHHHHHHhhcCC
Q 002830 691 RDLLNNTREELMDSNTDSSRSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVTREPGSFEWFKGVMDQVAEMDLK 770 (875)
Q Consensus 691 kdll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~R~~~s~eWf~~~L~el~e~~~~ 770 (875)
-|++.+.. ..|++.|.+..|+.... .+.+..++|+.. .
T Consensus 295 fDqL~rlh---------------------------------------SkRkis~WYGARS~rE~-fY~Ed~d~L~ae--~ 332 (410)
T COG2871 295 FDQLKRLH---------------------------------------SKRKISFWYGARSLREM-FYQEDFDQLQAE--N 332 (410)
T ss_pred HHHHHhhc---------------------------------------ccceeeeeeccchHHHh-HHHHHHHHHHhh--C
Confidence 99887743 26899999999999886 577778888654 4
Q ss_pred CcEEEEEEecccccCCChhhHHHHHHHhhhcccCCcccccCCeeeeecCCCCHHHHHHHHHhhCCC-CeEEEEEeCchHH
Q 002830 771 GQIELHNYLTSVYEEGDARSTLITMVQALNHAKHGVDILSGTRVRTHFARPNWKEVFSRVATKHPN-ATIGVFYCGMPVL 849 (875)
Q Consensus 771 ~~iev~~ylT~~~~~~d~rs~l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~~~v~~~~~~~~~~-~~v~Vf~CGPp~l 849 (875)
+++.-|+-++....|+ +-|-.+|. .| +-+.....+.|+. +....|.||||-|
T Consensus 333 pNF~wH~aLSdplpED------------------nW~g~TgF---ih------nv~~en~Lk~h~aPEDceyYmCGPp~m 385 (410)
T COG2871 333 PNFHWHLALSDPLPED------------------NWDGYTGF---IH------NVLYENYLKDHEAPEDCEYYMCGPPLM 385 (410)
T ss_pred CCcEEEEEecCCCCcC------------------CcccchhH---HH------HHHHhhhhhcCCCchheeEEeeCcchh
Confidence 5688888877543321 11111220 00 1122233445543 5688999999999
Q ss_pred HHHHHHHHHhhcc
Q 002830 850 AKELKKLSHELTH 862 (875)
Q Consensus 850 ~~~lr~~~~~~~~ 862 (875)
...+-+++.++..
T Consensus 386 NasvikmL~dlGV 398 (410)
T COG2871 386 NASVIKMLKDLGV 398 (410)
T ss_pred hHHHHHHHHhcCc
Confidence 9999999999754
No 86
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.23 E-value=2.4e-11 Score=123.78 Aligned_cols=102 Identities=21% Similarity=0.251 Sum_probs=88.1
Q ss_pred HHHHHHHHHHhccC---CCCCcCHHHHhhhhCCCCCHHHHHHHHHHHHhhCCCCCCc-ccHHHHHHHHHhhcCCCh-hhh
Q 002830 153 ELWRLVESRFESLA---EDGLLAREDFGECIGMVDTKEFAVGIFDALARRRGQKIGK-ITKEELREFWLQISDQSF-DAR 227 (875)
Q Consensus 153 ~~w~~v~~~F~~l~---~dG~L~~~eF~~~~g~~~~~~f~~~lF~al~~~~~~~~g~-I~f~Ef~~~~~~~~~~s~-d~k 227 (875)
++...++.||.+++ .+|.|+++||..++... .+.|+++|++.++ .++ +|. |+|+||+..++++...+. ++|
T Consensus 30 ~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~~~-~Np~~~rI~~~f~-~~~--~~~~v~F~~Fv~~ls~f~~~~~~~~K 105 (187)
T KOG0034|consen 30 NEIERLYERFKKLDRNNGDGYLTKEEFLSIPELA-LNPLADRIIDRFD-TDG--NGDPVDFEEFVRLLSVFSPKASKREK 105 (187)
T ss_pred HHHHHHHHHHHHhccccccCccCHHHHHHHHHHh-cCcHHHHHHHHHh-ccC--CCCccCHHHHHHHHhhhcCCccHHHH
Confidence 57999999999999 57999999999999555 5689999999644 465 555 999999999999886544 569
Q ss_pred HHHHHhhhccccceEeeccCCCCccCHHHHHHHHHhcccc
Q 002830 228 LQIFFDIVDELGEFTSYYFPCKRVSHLWQLETLLLQRDTY 267 (875)
Q Consensus 228 L~~~F~myD~v~eii~l~a~~nG~I~~~el~~ll~~~~~~ 267 (875)
++++|+||| .+.+|+|+.+|+.+++..+...
T Consensus 106 l~faF~vYD---------~~~~G~I~reel~~iv~~~~~~ 136 (187)
T KOG0034|consen 106 LRFAFRVYD---------LDGDGFISREELKQILRMMVGE 136 (187)
T ss_pred HHHHHHHhc---------CCCCCcCcHHHHHHHHHHHHcc
Confidence 999999999 9999999999999999887553
No 87
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=99.10 E-value=2.1e-10 Score=105.14 Aligned_cols=91 Identities=25% Similarity=0.444 Sum_probs=74.3
Q ss_pred eeEEEEEEeeCCCEEEEEEecCC---CcccCCCcEEEEECCCCCCcccccceeecCCCC-CeEEEEEEec--CCCcHHHH
Q 002830 551 SAKDLKVSVLPGNVLSIVMSKPN---GFRYRSGQYIFLQCPTISSFEWHPFSITSAPGD-DHLSVHIRIV--GDWTHELK 624 (875)
Q Consensus 551 ~~~i~~v~~l~~~vl~L~~~~p~---~~~ykpGQyvfL~~p~is~~e~HPFTItSaP~d-d~lsl~IR~~--G~wT~~L~ 624 (875)
+++|++++.+++++..+++..|. .+.|+||||+.|+++.-+...++||||+|.|.+ +++.|+||.. |..|+.|.
T Consensus 1 ~~~v~~~~~~s~~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~~~~~~~~R~yS~~s~~~~~~~~~~~ik~~~~G~~S~~L~ 80 (99)
T PF00970_consen 1 KAKVVEIEELSPDVKIFRFKLPDPDQKLDFKPGQFVSVRVPINGKQVSRPYSPASSPDDKGYLEFAIKRYPNGRVSRYLH 80 (99)
T ss_dssp EEEEEEEEEESSSEEEEEEEESSTTTT-SSTTT-EEEEEEEETTEEEEEEEEBCSSTTSSSEEEEEEEECTTSHHHHHHH
T ss_pred CEEEEEEEEeCCCeEEEEEEECCCCcccccCcceEEEEEEccCCcceecceeEeeecCCCCcEEEEEEeccCCHHHHHHH
Confidence 36788999999999999998774 367999999999999444568999999999975 5999999999 77788885
Q ss_pred HHhhhcccccccCCccccccCCCCCCCCCEEEEECcCCCC
Q 002830 625 QVFTEDKDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAA 664 (875)
Q Consensus 625 ~~~~~~~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~ 664 (875)
++ .+| ..|.|.||||.+
T Consensus 81 ~l---------~~G--------------d~v~i~gP~G~f 97 (99)
T PF00970_consen 81 QL---------KPG--------------DEVEIRGPYGNF 97 (99)
T ss_dssp TS---------CTT--------------SEEEEEEEESSE
T ss_pred hC---------CCC--------------CEEEEEEccccc
Confidence 53 344 899999999986
No 88
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.96 E-value=4.7e-09 Score=128.60 Aligned_cols=117 Identities=18% Similarity=0.292 Sum_probs=93.2
Q ss_pred eeEEEEEEeeCCCEEEEEEecCCC-cccCCCcEEEEECCCCC--Cc-ccccceeecCC-CCCeEEEEEEecCCCcHHHHH
Q 002830 551 SAKDLKVSVLPGNVLSIVMSKPNG-FRYRSGQYIFLQCPTIS--SF-EWHPFSITSAP-GDDHLSVHIRIVGDWTHELKQ 625 (875)
Q Consensus 551 ~~~i~~v~~l~~~vl~L~~~~p~~-~~ykpGQyvfL~~p~is--~~-e~HPFTItSaP-~dd~lsl~IR~~G~wT~~L~~ 625 (875)
..+|+++..+.+++..+++..|.. -.++|||++.|+++..+ .. +..||||++.+ +.+++++.++..|.-|+.|.+
T Consensus 792 ~~~Vv~~~~lap~i~~L~l~aP~iA~~~kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD~e~g~It~i~rvVGkgT~~Ls~ 871 (1028)
T PRK06567 792 TSRVNKINILDDKTFELIIHSPLAAKNFKFGQFFRLQNYSEDAAKLIEPVALSPIDIDVEKGLISFIVFEVGKSTSLCKT 871 (1028)
T ss_pred ceEEEEEEEecCCEEEEEEeCcchhhcCCCCceEEEEeCCCCCccccCceeEEeeccCCCCCEEEEEEEEEChHHHHHhc
Confidence 457888899999999999988863 36889999999986432 22 45689999876 457899999999999998876
Q ss_pred HhhhcccccccCCccccccCCCCCCCCCEEEEECcCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHH
Q 002830 626 VFTEDKDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAAAQDYSNYDVLLLVGLGIGATPFISILRDLL 694 (875)
Q Consensus 626 ~~~~~~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~~~~~~~yd~vlLVagGiGITP~iSiLkdll 694 (875)
+ .+| ..+.|-||+|.+.. ...++++||||||+|++| +.+.|.
T Consensus 872 l---------~~G--------------d~v~v~GPLG~pF~-i~~~k~vLLVgGGVGiAp---Lak~Lk 913 (1028)
T PRK06567 872 L---------SEN--------------EKVVLMGPTGSPLE-IPQNKKIVIVDFEVGNIG---LLKVLK 913 (1028)
T ss_pred C---------CCC--------------CEEEEEcccCCCCC-CCCCCeEEEEEccccHHH---HHHHHH
Confidence 5 344 67999999999865 334679999999999997 445554
No 89
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.83 E-value=1.9e-08 Score=99.78 Aligned_cols=101 Identities=19% Similarity=0.265 Sum_probs=84.1
Q ss_pred HHHHHHHHHHhccC--CCCCcCHHHHhhhh---CCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcC-CC---
Q 002830 153 ELWRLVESRFESLA--EDGLLAREDFGECI---GMVDTKEFAVGIFDALARRRGQKIGKITKEELREFWLQISD-QS--- 223 (875)
Q Consensus 153 ~~w~~v~~~F~~l~--~dG~L~~~eF~~~~---g~~~~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~~~-~s--- 223 (875)
+.-.++.+.|+.+| ++|.|+.+|++.++ |..+++.-+..+++.++ .++ +|.|+|+||+..+..... .+
T Consensus 5 ~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D-~dg--~g~I~~~eF~~l~~~~~~~~~~~~ 81 (151)
T KOG0027|consen 5 EQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEID-LDG--DGTIDFEEFLDLMEKLGEEKTDEE 81 (151)
T ss_pred HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhC-CCC--CCeEcHHHHHHHHHhhhccccccc
Confidence 45678888888888 89999999999995 77788888999998744 466 999999999998875432 22
Q ss_pred -hhhhHHHHHhhhccccceEeeccCCCCccCHHHHHHHHHhcc
Q 002830 224 -FDARLQIFFDIVDELGEFTSYYFPCKRVSHLWQLETLLLQRD 265 (875)
Q Consensus 224 -~d~kL~~~F~myD~v~eii~l~a~~nG~I~~~el~~ll~~~~ 265 (875)
..+.++.+|++|| .|+||+||.+||..+|...-
T Consensus 82 ~~~~el~eaF~~fD---------~d~~G~Is~~el~~~l~~lg 115 (151)
T KOG0027|consen 82 ASSEELKEAFRVFD---------KDGDGFISASELKKVLTSLG 115 (151)
T ss_pred ccHHHHHHHHHHHc---------cCCCCcCcHHHHHHHHHHhC
Confidence 2458999999999 99999999999999997753
No 90
>PTZ00184 calmodulin; Provisional
Probab=98.72 E-value=7.6e-08 Score=93.74 Aligned_cols=100 Identities=15% Similarity=0.217 Sum_probs=85.6
Q ss_pred HHHHHHHHHHhccC--CCCCcCHHHHhhhh---CCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhh-cCCChhh
Q 002830 153 ELWRLVESRFESLA--EDGLLAREDFGECI---GMVDTKEFAVGIFDALARRRGQKIGKITKEELREFWLQI-SDQSFDA 226 (875)
Q Consensus 153 ~~w~~v~~~F~~l~--~dG~L~~~eF~~~~---g~~~~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~-~~~s~d~ 226 (875)
+.++++++.|+.+| ++|.|+.+||..++ |...+++.+..+|+. .+.++ +|.|+|+||+.++... .....++
T Consensus 8 ~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~-~d~~~--~g~i~~~ef~~~l~~~~~~~~~~~ 84 (149)
T PTZ00184 8 EQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINE-VDADG--NGTIDFPEFLTLMARKMKDTDSEE 84 (149)
T ss_pred HHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHh-cCcCC--CCcCcHHHHHHHHHHhccCCcHHH
Confidence 57899999999998 89999999999875 666667788999985 55565 8999999999998764 4466778
Q ss_pred hHHHHHhhhccccceEeeccCCCCccCHHHHHHHHHhc
Q 002830 227 RLQIFFDIVDELGEFTSYYFPCKRVSHLWQLETLLLQR 264 (875)
Q Consensus 227 kL~~~F~myD~v~eii~l~a~~nG~I~~~el~~ll~~~ 264 (875)
+++.+|+.|| .+.+|+|+.+|+..++...
T Consensus 85 ~~~~~F~~~D---------~~~~g~i~~~e~~~~l~~~ 113 (149)
T PTZ00184 85 EIKEAFKVFD---------RDGNGFISAAELRHVMTNL 113 (149)
T ss_pred HHHHHHHhhC---------CCCCCeEeHHHHHHHHHHH
Confidence 9999999999 9999999999999988664
No 91
>PTZ00183 centrin; Provisional
Probab=98.68 E-value=1.4e-07 Score=93.14 Aligned_cols=100 Identities=15% Similarity=0.201 Sum_probs=84.4
Q ss_pred HHHHHHHHHHhccC--CCCCcCHHHHhhhh---CCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhh-cCCChhh
Q 002830 153 ELWRLVESRFESLA--EDGLLAREDFGECI---GMVDTKEFAVGIFDALARRRGQKIGKITKEELREFWLQI-SDQSFDA 226 (875)
Q Consensus 153 ~~w~~v~~~F~~l~--~dG~L~~~eF~~~~---g~~~~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~-~~~s~d~ 226 (875)
+.-+++++.|..+| ++|.|+.+||..++ |...+...++.+|.. .+.++ +|.|+++||+.++... .....++
T Consensus 14 ~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~-~d~~~--~g~i~~~eF~~~~~~~~~~~~~~~ 90 (158)
T PTZ00183 14 DQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIAD-VDKDG--SGKIDFEEFLDIMTKKLGERDPRE 90 (158)
T ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHH-hCCCC--CCcEeHHHHHHHHHHHhcCCCcHH
Confidence 46688999999998 89999999999886 566677789999975 55566 9999999999988664 4556678
Q ss_pred hHHHHHhhhccccceEeeccCCCCccCHHHHHHHHHhc
Q 002830 227 RLQIFFDIVDELGEFTSYYFPCKRVSHLWQLETLLLQR 264 (875)
Q Consensus 227 kL~~~F~myD~v~eii~l~a~~nG~I~~~el~~ll~~~ 264 (875)
.++.+|++|| .+.+|+|+.+||..++...
T Consensus 91 ~l~~~F~~~D---------~~~~G~i~~~e~~~~l~~~ 119 (158)
T PTZ00183 91 EILKAFRLFD---------DDKTGKISLKNLKRVAKEL 119 (158)
T ss_pred HHHHHHHHhC---------CCCCCcCcHHHHHHHHHHh
Confidence 9999999999 9999999999999988653
No 92
>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]
Probab=98.61 E-value=1.1e-07 Score=99.29 Aligned_cols=129 Identities=21% Similarity=0.248 Sum_probs=85.9
Q ss_pred eeeeeeEEEEEEeeCCCEEEEEEecCC-C---cccCCCcEEEEEC--CCCCCc--ccccceeecCCCCCeEEEEEEec-C
Q 002830 547 SGHFSAKDLKVSVLPGNVLSIVMSKPN-G---FRYRSGQYIFLQC--PTISSF--EWHPFSITSAPGDDHLSVHIRIV-G 617 (875)
Q Consensus 547 ~~~~~~~i~~v~~l~~~vl~L~~~~p~-~---~~ykpGQyvfL~~--p~is~~--e~HPFTItSaP~dd~lsl~IR~~-G 617 (875)
.++..++|+.....++||.++++.+-. . ....|||||-|.- |..+.- .-..+|..++.-.+.+.+.+|.. |
T Consensus 147 ~G~~~F~vT~~~~~sSDv~~~~~~PK~~~~~~~~~~PGQYvsV~~~~~~~~~k~~~~~~~S~~~~t~rN~~R~sVr~~A~ 226 (385)
T KOG3378|consen 147 DGEVEFKVTELINESSDVKSVYLGPKDPAFRISHAHPGQYVSVLWEIPGLSHKTLREYSLSNRVDTCRNQFRISVRRVAG 226 (385)
T ss_pred CCccceeeeeeeccccceeEEEecCCCcceeeccCCCCceEEEeecCCccchhHHHHHHHhhhhhhhccceeEEEeehhc
Confidence 455677788888889999999986322 2 3578999999875 333211 11234555554567888888876 3
Q ss_pred CCcHHHHHHhhhcccccccCCccccccCCCCCCCCCEEEEECcCCCCCCC---CCCCCeEEEEEcCcCHHHHHHHHHHHH
Q 002830 618 DWTHELKQVFTEDKDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAAAQD---YSNYDVLLLVGLGIGATPFISILRDLL 694 (875)
Q Consensus 618 ~wT~~L~~~~~~~~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~~~~---~~~yd~vlLVagGiGITP~iSiLkdll 694 (875)
|.- |++++.+.+ ..+.|-+..|-|.+.-. .....++|+.+|||||||.++|+...+
T Consensus 227 G~V-------------------S~~~H~~~K--VGD~v~~S~PAG~F~~~r~~~~~N~PL~~~a~GiGiTPLi~iiE~~~ 285 (385)
T KOG3378|consen 227 GVV-------------------SNFVHDNLK--VGDIVGVSPPAGNFVYKRSEENVNRPLLCFAGGIGITPLIPIIETAL 285 (385)
T ss_pred hhh-------------------HHHhhcccc--ccceeeccCCCccceeehhhhccCCceEEecCCcCccccHHHHHHHH
Confidence 321 112222221 24788899999998632 234478999999999999999999866
Q ss_pred Hh
Q 002830 695 NN 696 (875)
Q Consensus 695 ~~ 696 (875)
..
T Consensus 286 ~C 287 (385)
T KOG3378|consen 286 LC 287 (385)
T ss_pred hc
Confidence 54
No 93
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=98.37 E-value=8.6e-06 Score=96.74 Aligned_cols=182 Identities=14% Similarity=0.145 Sum_probs=103.5
Q ss_pred ccccceeecCCCC--CeEEEEEEecC--CCcHHHHHHhhhcccccccCCccccccCCCCCCCCCEEEEECcCC-CCCCCC
Q 002830 594 EWHPFSITSAPGD--DHLSVHIRIVG--DWTHELKQVFTEDKDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYG-AAAQDY 668 (875)
Q Consensus 594 e~HPFTItSaP~d--d~lsl~IR~~G--~wT~~L~~~~~~~~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG-~~~~~~ 668 (875)
..+=|||+|.|.. +.+.+.|..+. .+.+ .+ ...-|+++...... ...+.|..+-+ .+..+-
T Consensus 372 kPR~YSIsSs~~~~~~~vhltV~vV~y~~~~~-~r-----------~GvcS~~L~~~~~~--g~~i~v~v~~n~nf~lp~ 437 (587)
T COG0369 372 KPRLYSIASSPGVSPDEVHLTVGVVRYQAEGR-ER-----------YGVCSGYLADLLEE--GDTIPVFVQPNKNFRLPE 437 (587)
T ss_pred CCeeeEeccCCCCCCCeEEEEEEEEEeccCCC-cc-----------cccchHHHHhhhcC--CCeEEEEeccCCccccCC
Confidence 4477999999963 55666665442 2211 00 01112333221111 23455554444 232222
Q ss_pred CCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhccccCCCcccccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEe
Q 002830 669 SNYDVLLLVGLGIGATPFISILRDLLNNTREELMDSNTDSSRSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVT 748 (875)
Q Consensus 669 ~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~ 748 (875)
....+++|||.|+||+||.++++....+.. ..++.+++++
T Consensus 438 ~~~~PiIMIG~GTGIAPFRafvq~r~~~~~----------------------------------------~gk~wLfFG~ 477 (587)
T COG0369 438 DPETPIIMIGPGTGIAPFRAFVQERAANGA----------------------------------------EGKNWLFFGC 477 (587)
T ss_pred CCCCceEEEcCCCCchhHHHHHHHHHhccc----------------------------------------cCceEEEecC
Confidence 333889999999999999999999766521 2378999999
Q ss_pred CCCCchhhHHHHHHHHHhhcCCCcEEEEEEecccccCCChhhHHHHHHHhhhcccCCcccccCCeeeeecCCCCHHHHHH
Q 002830 749 REPGSFEWFKGVMDQVAEMDLKGQIELHNYLTSVYEEGDARSTLITMVQALNHAKHGVDILSGTRVRTHFARPNWKEVFS 828 (875)
Q Consensus 749 R~~~s~eWf~~~L~el~e~~~~~~iev~~ylT~~~~~~d~rs~l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~~~v~~ 828 (875)
|++.+=..+++++++..+. ....++....++..++ + ..+|.. =|-+-+ .+.
T Consensus 478 R~~~~DfLY~~Ewe~~~~~--G~~~~l~~AfSRdq~~---K----iYVQd~-------------------lre~~d-el~ 528 (587)
T COG0369 478 RHFTEDFLYQEEWEEYLKD--GVLTRLDLAFSRDQEE---K----IYVQDR-------------------LREQAD-ELW 528 (587)
T ss_pred CCCccchhhHHHHHHHHhc--CCceeEEEEEeecCCC---C----ccHHHH-------------------HHHhHH-HHH
Confidence 9965543688777764432 1245666666653211 1 011110 011112 223
Q ss_pred HHHhhCCCCeEEEEEeC-chHHHHHHHHHHHhhcc
Q 002830 829 RVATKHPNATIGVFYCG-MPVLAKELKKLSHELTH 862 (875)
Q Consensus 829 ~~~~~~~~~~v~Vf~CG-Pp~l~~~lr~~~~~~~~ 862 (875)
++.++ + ..+|+|| +..|.++|.+++.+.-.
T Consensus 529 ~~l~~---g-a~~YVCGd~~~Ma~dV~~AL~~il~ 559 (587)
T COG0369 529 EWLEE---G-AHIYVCGDAKGMAKDVEEALLDILA 559 (587)
T ss_pred HHHHC---C-CEEEEeCCCccchHHHHHHHHHHHH
Confidence 33322 2 4799999 99999999999887643
No 94
>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]
Probab=98.36 E-value=2.9e-06 Score=100.67 Aligned_cols=128 Identities=14% Similarity=0.223 Sum_probs=78.6
Q ss_pred CCCCeEEEEEcCcCHHHHHHHHHHHHHhhhhhccccCCCcccccccCcCCCCCCCCCCccccCCCCCCCCCceEEEEEEe
Q 002830 669 SNYDVLLLVGLGIGATPFISILRDLLNNTREELMDSNTDSSRSASLNSCTSSNTSPGSSMIAGGKKKPQRTRNAYFYWVT 748 (875)
Q Consensus 669 ~~yd~vlLVagGiGITP~iSiLkdll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~f~Wv~ 748 (875)
+...+++|||.|+||+||.+++++......++ ...... +-+|.++
T Consensus 489 dp~~PiIMIGpGTGiAPFRgFlq~r~~~~~~~----------------------------------~~~~~~-~~Lf~Gc 533 (645)
T KOG1158|consen 489 DPSTPIIMIGPGTGIAPFRGFLQERLFLKQQG----------------------------------PKFGGG-MWLFFGC 533 (645)
T ss_pred CCCCcEEEEcCCCcchhhHHHHHHHHHhhhcC----------------------------------ccCCcc-eEEEEeC
Confidence 34568999999999999999999988775432 112244 8999999
Q ss_pred CCCCchhhHHHHHHHHHhhcCCCcEEEEEEecccccCCChhhHHHHHHHhhhcccCCcccccCCeeeeecCCCCHHHHHH
Q 002830 749 REPGSFEWFKGVMDQVAEMDLKGQIELHNYLTSVYEEGDARSTLITMVQALNHAKHGVDILSGTRVRTHFARPNWKEVFS 828 (875)
Q Consensus 749 R~~~s~eWf~~~L~el~e~~~~~~iev~~ylT~~~~~~d~rs~l~~m~q~l~~~k~g~divsg~rv~~~~gRPd~~~v~~ 828 (875)
|+++....+++++++..+. ....++..-.++. .+... ..+|... +-+-++|.+
T Consensus 534 R~~~~d~LY~eE~~~~~~~--~~l~~l~~A~SRe---q~~~k---~YVQd~l-------------------~e~~d~v~~ 586 (645)
T KOG1158|consen 534 RNSDEDYLYREEWEEYKKA--GILTRLDVAFSRE---QTPKK---IYVQDRL-------------------REYADEVWE 586 (645)
T ss_pred CCchHHHHHHHHHHHHHhc--Ccchhheeeeecc---CCCCc---eehhhHH-------------------HHHHHHHHH
Confidence 9999987888877776332 2222344444432 11100 0111100 111122333
Q ss_pred HHHhhCCCCeEEEEEeCchH-HHHHHHHHHHhhcc
Q 002830 829 RVATKHPNATIGVFYCGMPV-LAKELKKLSHELTH 862 (875)
Q Consensus 829 ~~~~~~~~~~v~Vf~CGPp~-l~~~lr~~~~~~~~ 862 (875)
-+.++ ..-+|+||+.. |+++|.++..+.-.
T Consensus 587 ~L~~~----~g~iYvCGd~~~Ma~dV~~~L~~i~~ 617 (645)
T KOG1158|consen 587 LLKKE----GGHIYVCGDAKGMAKDVQDALVRILA 617 (645)
T ss_pred HHhcC----CcEEEEecCCccchHHHHHHHHHHHH
Confidence 23221 23699999999 99999998877543
No 95
>PLN02964 phosphatidylserine decarboxylase
Probab=98.34 E-value=2.1e-06 Score=102.29 Aligned_cols=99 Identities=13% Similarity=0.101 Sum_probs=79.4
Q ss_pred HHHHHHHHHhccC--CCCCcCHHHHhhhhC-CCCCHH---HHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCChhhh
Q 002830 154 LWRLVESRFESLA--EDGLLAREDFGECIG-MVDTKE---FAVGIFDALARRRGQKIGKITKEELREFWLQISDQSFDAR 227 (875)
Q Consensus 154 ~w~~v~~~F~~l~--~dG~L~~~eF~~~~g-~~~~~~---f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~~~~s~d~k 227 (875)
+-+++.+.|+.+| +||.+ ...+-..+| ..++++ |++++|+. +|.++ +|.|+|+||+.++..+.....+++
T Consensus 141 qi~elkeaF~lfD~dgdG~i-Lg~ilrslG~~~pte~e~~fi~~mf~~-~D~Dg--dG~IdfdEFl~lL~~lg~~~seEE 216 (644)
T PLN02964 141 EPESACESFDLLDPSSSNKV-VGSIFVSCSIEDPVETERSFARRILAI-VDYDE--DGQLSFSEFSDLIKAFGNLVAANK 216 (644)
T ss_pred HHHHHHHHHHHHCCCCCCcC-HHHHHHHhCCCCCCHHHHHHHHHHHHH-hCCCC--CCeEcHHHHHHHHHHhccCCCHHH
Confidence 4578888899999 67887 333333357 344333 68999985 56676 999999999999988877778899
Q ss_pred HHHHHhhhccccceEeeccCCCCccCHHHHHHHHHhcc
Q 002830 228 LQIFFDIVDELGEFTSYYFPCKRVSHLWQLETLLLQRD 265 (875)
Q Consensus 228 L~~~F~myD~v~eii~l~a~~nG~I~~~el~~ll~~~~ 265 (875)
++.+|++|| .|+||+|+.+||..++....
T Consensus 217 L~eaFk~fD---------kDgdG~Is~dEL~~vL~~~~ 245 (644)
T PLN02964 217 KEELFKAAD---------LNGDGVVTIDELAALLALQQ 245 (644)
T ss_pred HHHHHHHhC---------CCCCCcCCHHHHHHHHHhcc
Confidence 999999999 99999999999999987643
No 96
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.11 E-value=7.4e-06 Score=78.36 Aligned_cols=101 Identities=18% Similarity=0.173 Sum_probs=83.1
Q ss_pred HHHHHHHHHHhccCC-------------CCCcCHHHHhhhhCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhh
Q 002830 153 ELWRLVESRFESLAE-------------DGLLAREDFGECIGMVDTKEFAVGIFDALARRRGQKIGKITKEELREFWLQI 219 (875)
Q Consensus 153 ~~w~~v~~~F~~l~~-------------dG~L~~~eF~~~~g~~~~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~ 219 (875)
..+.+|.+||..+.+ +-.++-+...++..+++ ++|-+++-++ +.+|| .|.++|++|+++.+++
T Consensus 25 KdIlrl~~Rf~~L~P~lVP~~~~~~~~~~v~vp~e~i~kMPELke-npfk~ri~e~-FSeDG--~GnlsfddFlDmfSV~ 100 (189)
T KOG0038|consen 25 KDILRLHKRFYELAPHLVPTDMTGNRPPIVKVPFELIEKMPELKE-NPFKRRICEV-FSEDG--RGNLSFDDFLDMFSVF 100 (189)
T ss_pred HHHHHHHHHHHHhCcccccccccCCCCCceeecHHHHhhChhhhc-ChHHHHHHHH-hccCC--CCcccHHHHHHHHHHH
Confidence 467899999999872 22556666677677774 4799999985 66688 9999999999999999
Q ss_pred cCCCh-hhhHHHHHhhhccccceEeeccCCCCccCHHHHHHHHHhccc
Q 002830 220 SDQSF-DARLQIFFDIVDELGEFTSYYFPCKRVSHLWQLETLLLQRDT 266 (875)
Q Consensus 220 ~~~s~-d~kL~~~F~myD~v~eii~l~a~~nG~I~~~el~~ll~~~~~ 266 (875)
+...+ +-|++.+|++|| -|.|++|..++|+..+..+.+
T Consensus 101 sE~APrdlK~~YAFkIYD---------fd~D~~i~~~DL~~~l~~lTr 139 (189)
T KOG0038|consen 101 SEMAPRDLKAKYAFKIYD---------FDGDEFIGHDDLEKTLTSLTR 139 (189)
T ss_pred HhhChHHhhhhheeEEee---------cCCCCcccHHHHHHHHHHHhh
Confidence 97555 679999999999 999999999999998877643
No 97
>PRK05419 putative sulfite oxidase subunit YedZ; Reviewed
Probab=98.11 E-value=4.7e-05 Score=79.37 Aligned_cols=127 Identities=13% Similarity=0.090 Sum_probs=83.7
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCccccccccccCCccchhhcccchhHHHHHHHHHHHHH
Q 002830 386 VPFDDNINFHKTIACAIIIGVVLHVGNHLACDFPRLVNSSPEEFAPMSTQFHNKKPTYKYLLTGVEGVTGIVMVVLMAIA 465 (875)
Q Consensus 386 vp~d~~~~fHk~ia~~i~v~~~iH~i~h~~~~f~~l~~~~~~~~~~l~~~f~~~~p~~~~~~~~~~g~tGiv~lvll~il 465 (875)
.+.|+.+.+||++|..+++.+++|.+.++..+. ..+++.+ +. +..+...-+.|.+++++++.+
T Consensus 68 ~~~~~l~~~RR~LGl~af~~a~lH~~~y~~~~~-------~~~~~~~---~~-------~i~~~~~i~~G~ia~~lLl~L 130 (205)
T PRK05419 68 TGQPLLIRTRRLLGLWAFFYATLHLLSYLLLDL-------GLDWSLL---GK-------EIVKRPYITVGMAAFLILLPL 130 (205)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------cccHHHH---HH-------HHHhchHHHHHHHHHHHHHHH
Confidence 355678999999999999999999988764221 1111111 11 111111235688888888888
Q ss_pred HHhhhhhhhhcCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchhhhhhHhHHHHHhhccceee
Q 002830 466 FTLATHKFRKNGVRLPSPFNRLTGFNAFWYSHHLTAIVYILLIVHGNFLYLAHEWYQKTTWMYISAPLLLYVAERNLRTR 545 (875)
Q Consensus 466 ~~~S~~~~Rr~~~~~~~~~~~~~~Ye~F~~~H~L~~i~~ill~~H~~~~~~~~~w~~~~~w~y~~~~~~ly~~drl~R~~ 545 (875)
.++|..+.||+. || .|...|.+..+++++.++|-.+.. .... .....|.++ ++++..-|+.+..
T Consensus 131 aiTS~~~~~rrL-----------g~-~Wk~LH~l~Y~a~~L~~~H~~~~~-k~~~--~~~~~y~~~-~~~ll~~R~~~~~ 194 (205)
T PRK05419 131 ALTSTRASQRRL-----------GK-RWQKLHRLVYLIAILAPLHYLWSV-KSDS--PEPLIYAAI-VAVLLALRLKKLR 194 (205)
T ss_pred HHHhhHHHHHHH-----------HH-HHHHHHHHHHHHHHHHHHHHHHHh-cccc--ccHHHHHHH-HHHHHHHHHHHHH
Confidence 899999988764 58 899999999898888899965432 1111 234566654 4555556776643
No 98
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=98.05 E-value=2.3e-05 Score=77.83 Aligned_cols=98 Identities=13% Similarity=0.121 Sum_probs=84.5
Q ss_pred HHHHHHHHHHhccCCCCCcCHHHHhhhhCC----CCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCChhhhH
Q 002830 153 ELWRLVESRFESLAEDGLLAREDFGECIGM----VDTKEFAVGIFDALARRRGQKIGKITKEELREFWLQISDQSFDARL 228 (875)
Q Consensus 153 ~~w~~v~~~F~~l~~dG~L~~~eF~~~~g~----~~~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~~~~s~d~kL 228 (875)
+.|.++...|+. ++|.|+-.+|-.+++. .++.+-+...|+ ++|.|+ +|.|+..|++..+..+-....++.+
T Consensus 56 ~ei~~l~~~~d~--~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~-~fD~d~--dG~Is~~eL~~vl~~lge~~~deev 130 (160)
T COG5126 56 AEINKLFEEIDA--GNETVDFPEFLTVMSVKLKRGDKEEELREAFK-LFDKDH--DGYISIGELRRVLKSLGERLSDEEV 130 (160)
T ss_pred HHHHHHHHhccC--CCCccCHHHHHHHHHHHhccCCcHHHHHHHHH-HhCCCC--CceecHHHHHHHHHhhcccCCHHHH
Confidence 567777777776 8899999999998743 456778899998 566687 9999999999999988888889999
Q ss_pred HHHHhhhccccceEeeccCCCCccCHHHHHHHHHhc
Q 002830 229 QIFFDIVDELGEFTSYYFPCKRVSHLWQLETLLLQR 264 (875)
Q Consensus 229 ~~~F~myD~v~eii~l~a~~nG~I~~~el~~ll~~~ 264 (875)
+.+++.|| .|.||+|+++||.+++...
T Consensus 131 ~~ll~~~d---------~d~dG~i~~~eF~~~~~~~ 157 (160)
T COG5126 131 EKLLKEYD---------EDGDGEIDYEEFKKLIKDS 157 (160)
T ss_pred HHHHHhcC---------CCCCceEeHHHHHHHHhcc
Confidence 99999999 9999999999999987543
No 99
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.02 E-value=4.6e-05 Score=74.52 Aligned_cols=101 Identities=18% Similarity=0.248 Sum_probs=82.0
Q ss_pred HHHHHHHHHHhccC--CCCCcCHHHHhh---hhCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHh-hcCCChhh
Q 002830 153 ELWRLVESRFESLA--EDGLLAREDFGE---CIGMVDTKEFAVGIFDALARRRGQKIGKITKEELREFWLQ-ISDQSFDA 226 (875)
Q Consensus 153 ~~w~~v~~~F~~l~--~dG~L~~~eF~~---~~g~~~~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~-~~~~s~d~ 226 (875)
++=.+++..|+.++ .+|.|+-+|+.- |+|....++-...|... .|+++ .|.|+|++|+..+.+ +...+..+
T Consensus 30 ~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d-~dk~~--~g~i~fe~f~~~mt~k~~e~dt~e 106 (172)
T KOG0028|consen 30 EQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLAD-VDKEG--SGKITFEDFRRVMTVKLGERDTKE 106 (172)
T ss_pred HHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHh-hhhcc--CceechHHHHHHHHHHHhccCcHH
Confidence 34468888888887 899999999944 46888777777777754 33354 899999999998865 66666888
Q ss_pred hHHHHHhhhccccceEeeccCCCCccCHHHHHHHHHhcc
Q 002830 227 RLQIFFDIVDELGEFTSYYFPCKRVSHLWQLETLLLQRD 265 (875)
Q Consensus 227 kL~~~F~myD~v~eii~l~a~~nG~I~~~el~~ll~~~~ 265 (875)
.++-+|+++| -|.+|.|+..+|+.+...+.
T Consensus 107 Ei~~afrl~D---------~D~~Gkis~~~lkrvakeLg 136 (172)
T KOG0028|consen 107 EIKKAFRLFD---------DDKTGKISQRNLKRVAKELG 136 (172)
T ss_pred HHHHHHHccc---------ccCCCCcCHHHHHHHHHHhC
Confidence 9999999999 99999999999999887753
No 100
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.00 E-value=5.1e-05 Score=73.66 Aligned_cols=96 Identities=15% Similarity=0.184 Sum_probs=85.4
Q ss_pred HHHHHHHHHHhccC--CCCCcCHHHHhhhh---CCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHH-HhhcCCChhh
Q 002830 153 ELWRLVESRFESLA--EDGLLAREDFGECI---GMVDTKEFAVGIFDALARRRGQKIGKITKEELREFW-LQISDQSFDA 226 (875)
Q Consensus 153 ~~w~~v~~~F~~l~--~dG~L~~~eF~~~~---g~~~~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~-~~~~~~s~d~ 226 (875)
.++.++.+.|.-+| .||.|.|+++...+ |-..+++.++.|+.. . .|.|+|--|+... +.++..++|+
T Consensus 29 ~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~E-----a--~gPINft~FLTmfGekL~gtdpe~ 101 (171)
T KOG0031|consen 29 SQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKE-----A--PGPINFTVFLTMFGEKLNGTDPEE 101 (171)
T ss_pred HHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh-----C--CCCeeHHHHHHHHHHHhcCCCHHH
Confidence 58999999999999 99999999999985 666778889988863 3 8999999999987 5688899999
Q ss_pred hHHHHHhhhccccceEeeccCCCCccCHHHHHHHHHhc
Q 002830 227 RLQIFFDIVDELGEFTSYYFPCKRVSHLWQLETLLLQR 264 (875)
Q Consensus 227 kL~~~F~myD~v~eii~l~a~~nG~I~~~el~~ll~~~ 264 (875)
-+.-+|+++| -++.|.|..+.|+.+|..+
T Consensus 102 ~I~~AF~~FD---------~~~~G~I~~d~lre~Ltt~ 130 (171)
T KOG0031|consen 102 VILNAFKTFD---------DEGSGKIDEDYLRELLTTM 130 (171)
T ss_pred HHHHHHHhcC---------ccCCCccCHHHHHHHHHHh
Confidence 9999999999 8888999999999988764
No 101
>PTZ00183 centrin; Provisional
Probab=97.96 E-value=5.3e-05 Score=74.69 Aligned_cols=97 Identities=15% Similarity=0.169 Sum_probs=77.5
Q ss_pred HHHHHHHhccC--CCCCcCHHHHhhhhC----CCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCChhhhHH
Q 002830 156 RLVESRFESLA--EDGLLAREDFGECIG----MVDTKEFAVGIFDALARRRGQKIGKITKEELREFWLQISDQSFDARLQ 229 (875)
Q Consensus 156 ~~v~~~F~~l~--~dG~L~~~eF~~~~g----~~~~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~~~~s~d~kL~ 229 (875)
..+.+.|..+| ++|.|+.+||..++. -...++-++++|.. .|.++ +|.|+.+||..++..+...-.++.++
T Consensus 53 ~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~-~D~~~--~G~i~~~e~~~~l~~~~~~l~~~~~~ 129 (158)
T PTZ00183 53 EEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRL-FDDDK--TGKISLKNLKRVAKELGETITDEELQ 129 (158)
T ss_pred HHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHH-hCCCC--CCcCcHHHHHHHHHHhCCCCCHHHHH
Confidence 45666777666 899999999988752 23455678899985 56576 99999999999997665545567899
Q ss_pred HHHhhhccccceEeeccCCCCccCHHHHHHHHHhc
Q 002830 230 IFFDIVDELGEFTSYYFPCKRVSHLWQLETLLLQR 264 (875)
Q Consensus 230 ~~F~myD~v~eii~l~a~~nG~I~~~el~~ll~~~ 264 (875)
.+|+.+| .+.+|.|+++||..++...
T Consensus 130 ~~~~~~d---------~~~~g~i~~~ef~~~~~~~ 155 (158)
T PTZ00183 130 EMIDEAD---------RNGDGEISEEEFYRIMKKT 155 (158)
T ss_pred HHHHHhC---------CCCCCcCcHHHHHHHHhcc
Confidence 9999999 9999999999999988653
No 102
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=97.78 E-value=0.0001 Score=73.16 Aligned_cols=95 Identities=15% Similarity=0.218 Sum_probs=78.2
Q ss_pred HHHHHHHhccC--CCCCcCHHHHhhhhCCC----C----CHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCChh
Q 002830 156 RLVESRFESLA--EDGLLAREDFGECIGMV----D----TKEFAVGIFDALARRRGQKIGKITKEELREFWLQISDQSFD 225 (875)
Q Consensus 156 ~~v~~~F~~l~--~dG~L~~~eF~~~~g~~----~----~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~~~~s~d 225 (875)
.++...+++.| +||.|+.+||..++... . +.+-+.+.|+ ++|.++ +|.|+.+||..++..+-..-.+
T Consensus 44 ~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~-~fD~d~--~G~Is~~el~~~l~~lg~~~~~ 120 (151)
T KOG0027|consen 44 EELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFR-VFDKDG--DGFISASELKKVLTSLGEKLTD 120 (151)
T ss_pred HHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHH-HHccCC--CCcCcHHHHHHHHHHhCCcCCH
Confidence 45666666666 89999999999997321 1 2347899998 566677 9999999999999988877778
Q ss_pred hhHHHHHhhhccccceEeeccCCCCccCHHHHHHHHH
Q 002830 226 ARLQIFFDIVDELGEFTSYYFPCKRVSHLWQLETLLL 262 (875)
Q Consensus 226 ~kL~~~F~myD~v~eii~l~a~~nG~I~~~el~~ll~ 262 (875)
+.++..++-.| .|.||.|+++|+.+++.
T Consensus 121 ~e~~~mi~~~d---------~d~dg~i~f~ef~~~m~ 148 (151)
T KOG0027|consen 121 EECKEMIREVD---------VDGDGKVNFEEFVKMMS 148 (151)
T ss_pred HHHHHHHHhcC---------CCCCCeEeHHHHHHHHh
Confidence 89999999999 99999999999988774
No 103
>PTZ00184 calmodulin; Provisional
Probab=97.72 E-value=0.00015 Score=70.40 Aligned_cols=95 Identities=15% Similarity=0.226 Sum_probs=75.4
Q ss_pred HHHHHHHhccC--CCCCcCHHHHhhhhCC----CCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCChhhhHH
Q 002830 156 RLVESRFESLA--EDGLLAREDFGECIGM----VDTKEFAVGIFDALARRRGQKIGKITKEELREFWLQISDQSFDARLQ 229 (875)
Q Consensus 156 ~~v~~~F~~l~--~dG~L~~~eF~~~~g~----~~~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~~~~s~d~kL~ 229 (875)
..+.+.|..+| ++|.|+.+||..++.. ....+-+..+|+ .+|.++ +|.|+.+||..++..+...-.++.++
T Consensus 47 ~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~-~~D~~~--~g~i~~~e~~~~l~~~~~~~~~~~~~ 123 (149)
T PTZ00184 47 AELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFK-VFDRDG--NGFISAAELRHVMTNLGEKLTDEEVD 123 (149)
T ss_pred HHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHH-hhCCCC--CCeEeHHHHHHHHHHHCCCCCHHHHH
Confidence 45666666666 8899999999988642 234456788997 466676 99999999999998765545567888
Q ss_pred HHHhhhccccceEeeccCCCCccCHHHHHHHHH
Q 002830 230 IFFDIVDELGEFTSYYFPCKRVSHLWQLETLLL 262 (875)
Q Consensus 230 ~~F~myD~v~eii~l~a~~nG~I~~~el~~ll~ 262 (875)
.+|+.+| .+.+|+|+.+||..++.
T Consensus 124 ~~~~~~d---------~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 124 EMIREAD---------VDGDGQINYEEFVKMMM 147 (149)
T ss_pred HHHHhcC---------CCCCCcCcHHHHHHHHh
Confidence 9999999 99999999999988764
No 104
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=97.67 E-value=5.9e-05 Score=63.61 Aligned_cols=60 Identities=20% Similarity=0.214 Sum_probs=40.9
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcC----CChhhhHHHHHhhhccccceEeeccCCCCccCHHHHHHH
Q 002830 189 AVGIFDALARRRGQKIGKITKEELREFWLQISD----QSFDARLQIFFDIVDELGEFTSYYFPCKRVSHLWQLETL 260 (875)
Q Consensus 189 ~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~~~----~s~d~kL~~~F~myD~v~eii~l~a~~nG~I~~~el~~l 260 (875)
+.++|+. .|.++ +|.|+.+||..++..+.. ...++.++.+|+.+| .|.||.|+++||..+
T Consensus 2 l~~~F~~-~D~d~--~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D---------~d~dG~i~~~Ef~~~ 65 (66)
T PF13499_consen 2 LKEAFKK-FDKDG--DGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFD---------TDGDGRISFDEFLNF 65 (66)
T ss_dssp HHHHHHH-HSTTS--SSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHT---------TTSSSSEEHHHHHHH
T ss_pred HHHHHHH-HcCCc--cCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhC---------CCCcCCCcHHHHhcc
Confidence 3567764 55465 788888888877766542 333456666788888 888888888887765
No 105
>COG2717 Predicted membrane protein [Function unknown]
Probab=97.57 E-value=0.0014 Score=67.80 Aligned_cols=122 Identities=16% Similarity=0.129 Sum_probs=85.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCccccccccccCCccchhhcccchhHHHHHHHHHHHHHHHhhh
Q 002830 391 NINFHKTIACAIIIGVVLHVGNHLACDFPRLVNSSPEEFAPMSTQFHNKKPTYKYLLTGVEGVTGIVMVVLMAIAFTLAT 470 (875)
Q Consensus 391 ~~~fHk~ia~~i~v~~~iH~i~h~~~~f~~l~~~~~~~~~~l~~~f~~~~p~~~~~~~~~~g~tGiv~lvll~il~~~S~ 470 (875)
.+.+.|.+|..+++.+++|...|+..+. +++ ++..+. +...-.....|++++++|..++++|.
T Consensus 73 l~~~Rr~LGl~af~~~~lH~~~Y~~~~l---------~~~-~~~~~~-------d~~~rpyitiG~iaflll~pLalTS~ 135 (209)
T COG2717 73 LIRIRRALGLWAFFYALLHFTAYLVLDL---------GLD-LALLGL-------DLLKRPYITIGMIAFLLLIPLALTSF 135 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hcc-HHHhhH-------HHHHhHHHHHHHHHHHHHHHHHHHhh
Confidence 4779999999999999999999974221 111 111111 11222234679999999999999999
Q ss_pred hhhhhcCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchhhhhhHhHHHHHhhccceee
Q 002830 471 HKFRKNGVRLPSPFNRLTGFNAFWYSHHLTAIVYILLIVHGNFLYLAHEWYQKTTWMYISAPLLLYVAERNLRTR 545 (875)
Q Consensus 471 ~~~Rr~~~~~~~~~~~~~~Ye~F~~~H~L~~i~~ill~~H~~~~~~~~~w~~~~~w~y~~~~~~ly~~drl~R~~ 545 (875)
.+.||+. | ..|...|.+..+++++..+|-.+.. +. .....+.|.++ .+.|.+.|+.+..
T Consensus 136 k~~~rrl-----------G-~rW~~LHrLvYl~~~L~~lH~~~s~--K~-~~~~~vlY~ii-~~~lll~R~~k~~ 194 (209)
T COG2717 136 KWVRRRL-----------G-KRWKKLHRLVYLALILGALHYLWSV--KI-DMPEPVLYAII-FAVLLLLRVTKTR 194 (209)
T ss_pred HHHHHHH-----------H-HHHHHHHHHHHHHHHHHHHHHHHhc--Cc-cchHHHHHHHH-HHHHHHHHHHHHH
Confidence 9999986 6 7888999999999999999977521 11 12235567665 5677777776543
No 106
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=97.43 E-value=0.00021 Score=60.27 Aligned_cols=57 Identities=23% Similarity=0.472 Sum_probs=44.3
Q ss_pred HHHHHHhccC--CCCCcCHHHHhhhh---CCC----CCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 002830 157 LVESRFESLA--EDGLLAREDFGECI---GMV----DTKEFAVGIFDALARRRGQKIGKITKEELREFW 216 (875)
Q Consensus 157 ~v~~~F~~l~--~dG~L~~~eF~~~~---g~~----~~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~ 216 (875)
++.+.|+.+| +||.|+++||..++ +.. ...+.++.+|+. .|.++ +|.|+|+||+.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~-~D~d~--dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFRE-FDTDG--DGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHH-HTTTS--SSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHH-hCCCC--cCCCcHHHHhccC
Confidence 4788899998 89999999999986 322 233466677985 55576 9999999999864
No 107
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=97.43 E-value=0.00035 Score=63.91 Aligned_cols=65 Identities=20% Similarity=0.150 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhccC--CCCCcCHHHHhhhh-CCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhc
Q 002830 153 ELWRLVESRFESLA--EDGLLAREDFGECI-GMVDTKEFAVGIFDALARRRGQKIGKITKEELREFWLQIS 220 (875)
Q Consensus 153 ~~w~~v~~~F~~l~--~dG~L~~~eF~~~~-g~~~~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~~ 220 (875)
++..++.+.|+.+| ++|.|+.+|+.+++ ..+.+++.++++|.. .+.++ +|.|+|+||+.++..+.
T Consensus 7 ~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~~~-~d~~~--~g~I~~~eF~~~~~~~~ 74 (96)
T smart00027 7 EDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNL-ADIDN--DGELDKDEFALAMHLIY 74 (96)
T ss_pred HHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHHH-hcCCC--CCCcCHHHHHHHHHHHH
Confidence 57889999999998 89999999999997 223456779999985 55455 99999999999886543
No 108
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=97.42 E-value=0.00035 Score=63.69 Aligned_cols=65 Identities=11% Similarity=0.116 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhccC---CCC-CcCHHHHhhhhCC--------CCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhc
Q 002830 153 ELWRLVESRFESLA---EDG-LLAREDFGECIGM--------VDTKEFAVGIFDALARRRGQKIGKITKEELREFWLQIS 220 (875)
Q Consensus 153 ~~w~~v~~~F~~l~---~dG-~L~~~eF~~~~g~--------~~~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~~ 220 (875)
.....+.+.|+++| +|| .|+++||+++++- ..++..++++++.++. ++ +|.|||+||+..+..+.
T Consensus 7 ~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~-n~--dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 7 GAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDS-NK--DNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCC-CC--CCCCCHHHHHHHHHHHH
Confidence 45566666677766 677 5999999999721 2355679999997644 65 99999999999876543
No 109
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=97.38 E-value=0.00094 Score=68.57 Aligned_cols=97 Identities=15% Similarity=0.192 Sum_probs=72.2
Q ss_pred HHHHHHHhccCCCCC-cCHHHHhhhhCCC---CC-HHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCC-Ch-----
Q 002830 156 RLVESRFESLAEDGL-LAREDFGECIGMV---DT-KEFAVGIFDALARRRGQKIGKITKEELREFWLQISDQ-SF----- 224 (875)
Q Consensus 156 ~~v~~~F~~l~~dG~-L~~~eF~~~~g~~---~~-~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~~~~-s~----- 224 (875)
.+|-++|+..- +|. |+.++|-..+..- .+ ++=++-.|+ +.|.++ +|.|+.+|+...+..+-.. ..
T Consensus 69 ~rI~~~f~~~~-~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~-vYD~~~--~G~I~reel~~iv~~~~~~~~~~~~e~ 144 (187)
T KOG0034|consen 69 DRIIDRFDTDG-NGDPVDFEEFVRLLSVFSPKASKREKLRFAFR-VYDLDG--DGFISREELKQILRMMVGENDDMSDEQ 144 (187)
T ss_pred HHHHHHHhccC-CCCccCHHHHHHHHhhhcCCccHHHHHHHHHH-HhcCCC--CCcCcHHHHHHHHHHHHccCCcchHHH
Confidence 57777777554 333 9999999987432 22 224566776 566676 9999999999999876542 22
Q ss_pred -hhhHHHHHhhhccccceEeeccCCCCccCHHHHHHHHHhcc
Q 002830 225 -DARLQIFFDIVDELGEFTSYYFPCKRVSHLWQLETLLLQRD 265 (875)
Q Consensus 225 -d~kL~~~F~myD~v~eii~l~a~~nG~I~~~el~~ll~~~~ 265 (875)
++.....|..+| .|.||+|+++|++.++.+.|
T Consensus 145 ~~~i~d~t~~e~D---------~d~DG~IsfeEf~~~v~~~P 177 (187)
T KOG0034|consen 145 LEDIVDKTFEEAD---------TDGDGKISFEEFCKVVEKQP 177 (187)
T ss_pred HHHHHHHHHHHhC---------CCCCCcCcHHHHHHHHHcCc
Confidence 245577899999 99999999999999987654
No 110
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=97.34 E-value=0.00033 Score=56.75 Aligned_cols=48 Identities=25% Similarity=0.401 Sum_probs=41.8
Q ss_pred CCCCcCHHHHhhhh---CCC-CCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 002830 167 EDGLLAREDFGECI---GMV-DTKEFAVGIFDALARRRGQKIGKITKEELREFWL 217 (875)
Q Consensus 167 ~dG~L~~~eF~~~~---g~~-~~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~ 217 (875)
++|.|+++||..++ |.+ .+++-+..||+. +|.++ +|.|+|+||+.++.
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~-~D~~~--~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFRE-FDTDG--DGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHH-HTTSS--SSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHh-cccCC--CCCCCHHHHHHHHH
Confidence 48999999999996 777 788889999985 66576 99999999999874
No 111
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=97.33 E-value=0.001 Score=68.60 Aligned_cols=91 Identities=16% Similarity=0.207 Sum_probs=74.4
Q ss_pred HHHHHHHhccC--CCCCcCHHHHhhhhCCC----CCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCChhhhHH
Q 002830 156 RLVESRFESLA--EDGLLAREDFGECIGMV----DTKEFAVGIFDALARRRGQKIGKITKEELREFWLQISDQSFDARLQ 229 (875)
Q Consensus 156 ~~v~~~F~~l~--~dG~L~~~eF~~~~g~~----~~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~~~~s~d~kL~ 229 (875)
..+...|...| ..|.|+-+|+++.+... -+.+-+.-|.. ++|+++ +|+|+|+||...|..+. +-|
T Consensus 57 ~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~-mfd~~~--~G~i~f~EF~~Lw~~i~------~Wr 127 (221)
T KOG0037|consen 57 PQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMIS-MFDRDN--SGTIGFKEFKALWKYIN------QWR 127 (221)
T ss_pred HHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHH-HhcCCC--CCccCHHHHHHHHHHHH------HHH
Confidence 45677788888 78999999999997421 23455555664 788787 99999999999998764 488
Q ss_pred HHHhhhccccceEeeccCCCCccCHHHHHHHHHhc
Q 002830 230 IFFDIVDELGEFTSYYFPCKRVSHLWQLETLLLQR 264 (875)
Q Consensus 230 ~~F~myD~v~eii~l~a~~nG~I~~~el~~ll~~~ 264 (875)
-.|+-|| .|..|.|+..||..-|.++
T Consensus 128 ~vF~~~D---------~D~SG~I~~sEL~~Al~~~ 153 (221)
T KOG0037|consen 128 NVFRTYD---------RDRSGTIDSSELRQALTQL 153 (221)
T ss_pred HHHHhcc---------cCCCCcccHHHHHHHHHHc
Confidence 8999999 9999999999999988765
No 112
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=97.27 E-value=0.0018 Score=73.54 Aligned_cols=101 Identities=24% Similarity=0.330 Sum_probs=56.1
Q ss_pred cEEEEECCCCCCcccccceeecCCCCCeEEEEEEecCCCcHHHHHHhhhcccccccCCccccccCCCCCCCCCEEEEECc
Q 002830 581 QYIFLQCPTISSFEWHPFSITSAPGDDHLSVHIRIVGDWTHELKQVFTEDKDSTYAIGRAEFGQGGTNRRIQPRLLVDGP 660 (875)
Q Consensus 581 QyvfL~~p~is~~e~HPFTItSaP~dd~lsl~IR~~G~wT~~L~~~~~~~~~~~~~~G~s~~l~~~~~~~~~~~v~IdGP 660 (875)
+|++=-+|.+ ..+.|||+|.|+.-.|.+.|-.+. |+..|++.=...| |+|+-... ++...++.|.
T Consensus 357 ~yl~d~~P~I---rPR~fSIas~~~~~~leL~VAiV~-ykT~l~~pRrGlC--------S~wl~sL~-~g~~i~~~v~-- 421 (574)
T KOG1159|consen 357 DYLLDLLPVI---RPRAFSIASSPGAHHLELLVAIVE-YKTILKEPRRGLC--------SNWLASLK-PGDEIPIKVR-- 421 (574)
T ss_pred HHHHHhcccc---ccceeeeccCCCCCceeEEEEEEE-Eeeeccccccchh--------HHHHhhcC-CCCeEEEEEe--
Confidence 3444445655 458999999999877876665442 1112211100001 11111000 0012344443
Q ss_pred CCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHHHh
Q 002830 661 YGAAAQDYSNYDVLLLVGLGIGATPFISILRDLLNN 696 (875)
Q Consensus 661 YG~~~~~~~~yd~vlLVagGiGITP~iSiLkdll~~ 696 (875)
=|....+.....+++|||-|+||||+.|++++-+.+
T Consensus 422 ~g~l~~p~~~~~PlImVGPGTGvAPfRa~i~er~~q 457 (574)
T KOG1159|consen 422 PGTLYFPSDLNKPLIMVGPGTGVAPFRALIQERIYQ 457 (574)
T ss_pred cCccccCCCCCCCeEEEcCCCCcccHHHHHHHHHhh
Confidence 244433334456999999999999999999987653
No 113
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=97.26 E-value=0.00073 Score=60.98 Aligned_cols=64 Identities=16% Similarity=0.208 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhccC---C-CCCcCHHHHhhhh------CCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhh
Q 002830 153 ELWRLVESRFESLA---E-DGLLAREDFGECI------GMVDTKEFAVGIFDALARRRGQKIGKITKEELREFWLQI 219 (875)
Q Consensus 153 ~~w~~v~~~F~~l~---~-dG~L~~~eF~~~~------g~~~~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~ 219 (875)
.....+-..|++++ + +|.|+.+||.+++ |.+.+++-++++|+.++. ++ +|.|+|+||+..+.-+
T Consensus 7 ~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~-d~--dG~Idf~EFv~lm~~l 80 (88)
T cd05029 7 QAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDR-NK--DQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcC-CC--CCCCcHHHHHHHHHHH
Confidence 45566777788887 2 6799999999998 555678889999987543 55 9999999999877543
No 114
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.26 E-value=0.00088 Score=60.52 Aligned_cols=64 Identities=16% Similarity=0.155 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhccC-CCCCcCHHHHhhhh--------CCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhh
Q 002830 153 ELWRLVESRFESLA-EDGLLAREDFGECI--------GMVDTKEFAVGIFDALARRRGQKIGKITKEELREFWLQI 219 (875)
Q Consensus 153 ~~w~~v~~~F~~l~-~dG~L~~~eF~~~~--------g~~~~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~ 219 (875)
.....+-..|++.+ .++.|++.||++.+ +-..++..++++|..||. ++ ||.|||+||+..+..+
T Consensus 5 ~ai~~lI~~FhkYaG~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~-n~--Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 5 HSMEKMMLTFHKFAGEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDD-CR--DGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCC-CC--CCcCcHHHHHHHHHHH
Confidence 46678888999999 67799999999985 333467889999987765 54 9999999999876543
No 115
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=97.25 E-value=0.00068 Score=56.89 Aligned_cols=58 Identities=26% Similarity=0.304 Sum_probs=45.9
Q ss_pred HHHHhccC--CCCCcCHHHHhhhh-CCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhh
Q 002830 159 ESRFESLA--EDGLLAREDFGECI-GMVDTKEFAVGIFDALARRRGQKIGKITKEELREFWLQI 219 (875)
Q Consensus 159 ~~~F~~l~--~dG~L~~~eF~~~~-g~~~~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~ 219 (875)
.+.|+.+| ++|.|+.+|+..++ .++.+++.++++|.. ++.++ +|.|+|+||+..+..+
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~i~~~-~d~~~--~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQIWDL-ADTDK--DGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHH-hcCCC--CCcCCHHHHHHHHHHH
Confidence 35688887 78999999999986 222367789999986 44465 8999999999988764
No 116
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.00083 Score=72.89 Aligned_cols=96 Identities=20% Similarity=0.144 Sum_probs=68.2
Q ss_pred HHHHHHHHhccC--CCCCcCHHHHhhhhCCCCCHHHHHH--HHHHHHhhCCCCCCcccHHHHHHHHHhhcCCChh-----
Q 002830 155 WRLVESRFESLA--EDGLLAREDFGECIGMVDTKEFAVG--IFDALARRRGQKIGKITKEELREFWLQISDQSFD----- 225 (875)
Q Consensus 155 w~~v~~~F~~l~--~dG~L~~~eF~~~~g~~~~~~f~~~--lF~al~~~~~~~~g~I~f~Ef~~~~~~~~~~s~d----- 225 (875)
..+=++||+.-| +||.|+++||...+--.+. +.... |-++|-+.|.++||.|+++||+.-+.-....+.+
T Consensus 162 ~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~-p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~ 240 (325)
T KOG4223|consen 162 IARDEERFKAADQDGDGSLTLEEFTAFLHPEEH-PHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVL 240 (325)
T ss_pred HHHHHHHHhhcccCCCCcccHHHHHhccChhhc-chHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCccccc
Confidence 346689999887 9999999999999743321 11111 2244556666669999999999877554432222
Q ss_pred hhHHHHHhhhccccceEeeccCCCCccCHHHHHHH
Q 002830 226 ARLQIFFDIVDELGEFTSYYFPCKRVSHLWQLETL 260 (875)
Q Consensus 226 ~kL~~~F~myD~v~eii~l~a~~nG~I~~~el~~l 260 (875)
..-+.||..+| .|.||+++.+|+..=
T Consensus 241 ~Ere~F~~~~D---------knkDG~L~~dEl~~W 266 (325)
T KOG4223|consen 241 TEREQFFEFRD---------KNKDGKLDGDELLDW 266 (325)
T ss_pred ccHHHHHHHhh---------cCCCCccCHHHHhcc
Confidence 12346899999 999999999999863
No 117
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=97.22 E-value=0.00069 Score=54.83 Aligned_cols=51 Identities=18% Similarity=0.214 Sum_probs=43.5
Q ss_pred CCcccHHHHHHHHHhhcCC-ChhhhHHHHHhhhccccceEeeccCCCCccCHHHHHHHHHh
Q 002830 204 IGKITKEELREFWLQISDQ-SFDARLQIFFDIVDELGEFTSYYFPCKRVSHLWQLETLLLQ 263 (875)
Q Consensus 204 ~g~I~f~Ef~~~~~~~~~~-s~d~kL~~~F~myD~v~eii~l~a~~nG~I~~~el~~ll~~ 263 (875)
+|.|+.+||..++..+.-+ -.++.++.+|+.+| .+.||+|+++||..++..
T Consensus 2 ~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D---------~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 2 DGKITREEFRRALSKLGIKDLSEEEVDRLFREFD---------TDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHT---------TSSSSSEEHHHHHHHHHH
T ss_pred cCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcc---------cCCCCCCCHHHHHHHHHh
Confidence 7999999999999665433 44566999999999 999999999999998753
No 118
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=97.20 E-value=0.00031 Score=75.59 Aligned_cols=98 Identities=10% Similarity=0.003 Sum_probs=84.3
Q ss_pred HHHHHHHHHhccC------CCCCcCHHHHhhhhCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcC-CChhh
Q 002830 154 LWRLVESRFESLA------EDGLLAREDFGECIGMVDTKEFAVGIFDALARRRGQKIGKITKEELREFWLQISD-QSFDA 226 (875)
Q Consensus 154 ~w~~v~~~F~~l~------~dG~L~~~eF~~~~g~~~~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~~~-~s~d~ 226 (875)
.|..|++.-+... +.+.|--.||+.-+....+ +.+..+|. |||+.+ +|.+||+|.+..++++++ ....+
T Consensus 221 ~~~gl~k~ld~y~~var~~kg~~igi~efa~~l~vpvs-d~l~~~f~-LFde~~--tg~~D~re~v~~lavlc~p~~t~~ 296 (412)
T KOG4666|consen 221 PLVGLIKKLDGYVYVAREAKGPDIGIVEFAVNLRVPVS-DKLAPTFM-LFDEGT--TGNGDYRETVKTLAVLCGPPVTPV 296 (412)
T ss_pred ChHHHHHHHhhHHHHHHhccCCCcceeEeeeeeecchh-hhhhhhhh-eecCCC--CCcccHHHHhhhheeeeCCCCcHH
Confidence 6999999888775 7889999999999988765 56888995 888787 999999999999999886 45578
Q ss_pred hHHHHHhhhccccceEeeccCCCCccCHHHHHHHHHhc
Q 002830 227 RLQIFFDIVDELGEFTSYYFPCKRVSHLWQLETLLLQR 264 (875)
Q Consensus 227 kL~~~F~myD~v~eii~l~a~~nG~I~~~el~~ll~~~ 264 (875)
-+|.+|+||| ++.||+++..+|..+++..
T Consensus 297 iiq~afk~f~---------v~eDg~~ge~~ls~ilq~~ 325 (412)
T KOG4666|consen 297 IIQYAFKRFS---------VAEDGISGEHILSLILQVV 325 (412)
T ss_pred HHHHHHHhcc---------cccccccchHHHHHHHHHh
Confidence 9999999999 9999999998888887654
No 119
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=97.15 E-value=0.0014 Score=59.75 Aligned_cols=65 Identities=18% Similarity=0.230 Sum_probs=52.9
Q ss_pred HHHHHHHHHhhCCCCCC-cccHHHHHHHHHh-h----cCCChhhhHHHHHhhhccccceEeeccCCCCccCHHHHHHHHH
Q 002830 189 AVGIFDALARRRGQKIG-KITKEELREFWLQ-I----SDQSFDARLQIFFDIVDELGEFTSYYFPCKRVSHLWQLETLLL 262 (875)
Q Consensus 189 ~~~lF~al~~~~~~~~g-~I~f~Ef~~~~~~-~----~~~s~d~kL~~~F~myD~v~eii~l~a~~nG~I~~~el~~ll~ 262 (875)
+.++|..++++|+ +| .|+.+||...+.. + .....++.+..+++-.| .|.||.|+++||..++.
T Consensus 12 ~~~~F~~~dd~dg--dg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD---------~n~dG~Idf~EF~~l~~ 80 (93)
T cd05026 12 LIRIFHNYSGKEG--DRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLD---------SNKDNEVDFNEFVVLVA 80 (93)
T ss_pred HHHHHHHHHccCC--CCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhC---------CCCCCCCCHHHHHHHHH
Confidence 5678998777777 87 5999999999854 2 33335668999999999 99999999999999887
Q ss_pred hc
Q 002830 263 QR 264 (875)
Q Consensus 263 ~~ 264 (875)
.+
T Consensus 81 ~l 82 (93)
T cd05026 81 AL 82 (93)
T ss_pred HH
Confidence 64
No 120
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=97.12 E-value=0.0018 Score=66.84 Aligned_cols=88 Identities=16% Similarity=0.230 Sum_probs=70.1
Q ss_pred HHHHHHHHHHhccCCCCCcCHHHHhhhh---CCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCChhhhHH
Q 002830 153 ELWRLVESRFESLAEDGLLAREDFGECI---GMVDTKEFAVGIFDALARRRGQKIGKITKEELREFWLQISDQSFDARLQ 229 (875)
Q Consensus 153 ~~w~~v~~~F~~l~~dG~L~~~eF~~~~---g~~~~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~~~~s~d~kL~ 229 (875)
.+|..+.++|+ -|.+|.|+..|+.+.| |-..++.+.+.|++.+++ .+ +|.|+|++|++.+.++ .+|-
T Consensus 124 ~~Wr~vF~~~D-~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~-~~--~g~i~FD~FI~ccv~L------~~lt 193 (221)
T KOG0037|consen 124 NQWRNVFRTYD-RDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDR-FG--GGRIDFDDFIQCCVVL------QRLT 193 (221)
T ss_pred HHHHHHHHhcc-cCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhcc-cc--CCceeHHHHHHHHHHH------HHHH
Confidence 46777777777 4589999999999985 667889999999998655 43 7899999999988765 3577
Q ss_pred HHHhhhccccceEeeccCCCCccC--HHHHHH
Q 002830 230 IFFDIVDELGEFTSYYFPCKRVSH--LWQLET 259 (875)
Q Consensus 230 ~~F~myD~v~eii~l~a~~nG~I~--~~el~~ 259 (875)
.+|+-+| .+.+|.|+ .+++-.
T Consensus 194 ~~Fr~~D---------~~q~G~i~~~y~dfl~ 216 (221)
T KOG0037|consen 194 EAFRRRD---------TAQQGSITISYDDFLQ 216 (221)
T ss_pred HHHHHhc---------cccceeEEEeHHHHHH
Confidence 8999999 88788776 455544
No 121
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=97.08 E-value=0.0017 Score=52.21 Aligned_cols=60 Identities=15% Similarity=0.179 Sum_probs=37.8
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCChhhhHHHHHhhhccccceEeeccCCCCccCHHHHHHHH
Q 002830 190 VGIFDALARRRGQKIGKITKEELREFWLQISDQSFDARLQIFFDIVDELGEFTSYYFPCKRVSHLWQLETLL 261 (875)
Q Consensus 190 ~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~~~~s~d~kL~~~F~myD~v~eii~l~a~~nG~I~~~el~~ll 261 (875)
..+|+. .+.++ +|.|+++||..++..+.....++.++.+|+.+| .+.+|.|+.+||..++
T Consensus 3 ~~~f~~-~d~~~--~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 3 REAFRL-FDKDG--DGTISADELKAALKSLGEGLSEEEIDEMIREVD---------KDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHH-hCCCC--CCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhC---------CCCCCeEeHHHHHHHh
Confidence 445653 34344 677777777777666655555666666777777 6666777777766543
No 122
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=97.04 E-value=0.0019 Score=58.24 Aligned_cols=67 Identities=13% Similarity=0.210 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhhCCCCCC-cccHHHHHHHHHh-----hcCCChhhhHHHHHhhhccccceEeeccCCCCccCHHHHHHHH
Q 002830 188 FAVGIFDALARRRGQKIG-KITKEELREFWLQ-----ISDQSFDARLQIFFDIVDELGEFTSYYFPCKRVSHLWQLETLL 261 (875)
Q Consensus 188 f~~~lF~al~~~~~~~~g-~I~f~Ef~~~~~~-----~~~~s~d~kL~~~F~myD~v~eii~l~a~~nG~I~~~el~~ll 261 (875)
-+.++|+.++++++ +| .|+.+||...+.. +.....++.++.+++-.| .|+||.|+++||..++
T Consensus 9 ~l~~aF~~fD~~dg--dG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D---------~n~dG~v~f~eF~~li 77 (88)
T cd05027 9 ALIDVFHQYSGREG--DKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLD---------SDGDGECDFQEFMAFV 77 (88)
T ss_pred HHHHHHHHhcccCC--CcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhC---------CCCCCcCcHHHHHHHH
Confidence 35688986555677 99 5999999999976 555555677999999999 9999999999999988
Q ss_pred Hhcc
Q 002830 262 LQRD 265 (875)
Q Consensus 262 ~~~~ 265 (875)
...-
T Consensus 78 ~~~~ 81 (88)
T cd05027 78 AMVT 81 (88)
T ss_pred HHHH
Confidence 7653
No 123
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=97.02 E-value=0.0013 Score=74.12 Aligned_cols=98 Identities=21% Similarity=0.323 Sum_probs=80.4
Q ss_pred HHHHHHhccC--CCCCcCHHHHhhhhCCCCCHHHHHHHHHHHHhhCCC-CCCcccHHHHHHHHHhhcCCChhhhHHHHHh
Q 002830 157 LVESRFESLA--EDGLLAREDFGECIGMVDTKEFAVGIFDALARRRGQ-KIGKITKEELREFWLQISDQSFDARLQIFFD 233 (875)
Q Consensus 157 ~v~~~F~~l~--~dG~L~~~eF~~~~g~~~~~~f~~~lF~al~~~~~~-~~g~I~f~Ef~~~~~~~~~~s~d~kL~~~F~ 233 (875)
.++-.|-.|| .||.|++++++..=.-..+.-|++|+|+++-+..-. .+|.+||++|+.|+-.+.+.+...-|+--|+
T Consensus 279 viy~kFweLD~Dhd~lidk~~L~ry~d~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFr 358 (493)
T KOG2562|consen 279 VIYCKFWELDTDHDGLIDKEDLKRYGDHTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFR 358 (493)
T ss_pred HHHHHHhhhccccccccCHHHHHHHhccchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhhee
Confidence 5566688888 899999999988754334578999999854332211 2789999999999988989888999999999
Q ss_pred hhccccceEeeccCCCCccCHHHHHHHHHh
Q 002830 234 IVDELGEFTSYYFPCKRVSHLWQLETLLLQ 263 (875)
Q Consensus 234 myD~v~eii~l~a~~nG~I~~~el~~ll~~ 263 (875)
..| .++||+|+..||..+...
T Consensus 359 clD---------ld~~G~Lt~~el~~fyee 379 (493)
T KOG2562|consen 359 CLD---------LDGDGILTLNELRYFYEE 379 (493)
T ss_pred eee---------ccCCCcccHHHHHHHHHH
Confidence 999 999999999999987654
No 124
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=96.98 E-value=0.0027 Score=60.99 Aligned_cols=101 Identities=14% Similarity=0.164 Sum_probs=77.9
Q ss_pred HHHHHHHHHhccC--CCCCcCHHHHhhhh---CCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCC---Chh
Q 002830 154 LWRLVESRFESLA--EDGLLAREDFGECI---GMVDTKEFAVGIFDALARRRGQKIGKITKEELREFWLQISDQ---SFD 225 (875)
Q Consensus 154 ~w~~v~~~F~~l~--~dG~L~~~eF~~~~---g~~~~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~~~~---s~d 225 (875)
+-.++...|.-+| +||+|+-++.++|+ |.++++.-+.+......+ +..+-..|+|++|+-.++++++. ..-
T Consensus 9 ~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~-~~~~~~rl~FE~fLpm~q~vaknk~q~t~ 87 (152)
T KOG0030|consen 9 QMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKR-REMNVKRLDFEEFLPMYQQVAKNKDQGTY 87 (152)
T ss_pred hHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCccc-chhhhhhhhHHHHHHHHHHHHhccccCcH
Confidence 4477888888888 99999999999995 888888777777765444 32224679999999999887752 222
Q ss_pred hhHHHHHhhhccccceEeeccCCCCccCHHHHHHHHHhc
Q 002830 226 ARLQIFFDIVDELGEFTSYYFPCKRVSHLWQLETLLLQR 264 (875)
Q Consensus 226 ~kL~~~F~myD~v~eii~l~a~~nG~I~~~el~~ll~~~ 264 (875)
+..-.-.+.+| ..+||.|.-.||..+|..+
T Consensus 88 edfvegLrvFD---------keg~G~i~~aeLRhvLttl 117 (152)
T KOG0030|consen 88 EDFVEGLRVFD---------KEGNGTIMGAELRHVLTTL 117 (152)
T ss_pred HHHHHHHHhhc---------ccCCcceeHHHHHHHHHHH
Confidence 34444677899 9999999999999999765
No 125
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=96.98 E-value=0.0017 Score=59.14 Aligned_cols=62 Identities=15% Similarity=0.117 Sum_probs=44.6
Q ss_pred HHHHHHHHHhccCC-CCCcCHHHHhhhhC--------CCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHh
Q 002830 154 LWRLVESRFESLAE-DGLLAREDFGECIG--------MVDTKEFAVGIFDALARRRGQKIGKITKEELREFWLQ 218 (875)
Q Consensus 154 ~w~~v~~~F~~l~~-dG~L~~~eF~~~~g--------~~~~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~ 218 (875)
.+.++.+.|+..++ ||.|+.+|+..++. ...+.+.++++++. .+.++ +|.|+|+||+..+..
T Consensus 9 ~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~-~D~~~--dg~I~f~eF~~l~~~ 79 (94)
T cd05031 9 SLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKD-LDQNR--DGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHH-hCCCC--CCcCcHHHHHHHHHH
Confidence 34444444444344 69999999999863 24567789999986 45465 999999999987754
No 126
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=96.97 E-value=0.0018 Score=58.56 Aligned_cols=64 Identities=11% Similarity=0.135 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhc-cC--CCC-CcCHHHHhhhhCC--------CCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhh
Q 002830 153 ELWRLVESRFES-LA--EDG-LLAREDFGECIGM--------VDTKEFAVGIFDALARRRGQKIGKITKEELREFWLQI 219 (875)
Q Consensus 153 ~~w~~v~~~F~~-l~--~dG-~L~~~eF~~~~g~--------~~~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~ 219 (875)
.....+.+.|++ .+ ++| .|+++||+.+++- ..++..+++++..+ |.|+ ||.|+|+||+..+..+
T Consensus 6 ~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~-D~d~--DG~I~f~EF~~l~~~l 81 (89)
T cd05023 6 RCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKL-DLNS--DGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHc-CCCC--CCcCcHHHHHHHHHHH
Confidence 456777888888 43 444 8999999999733 23456799999864 4465 9999999999877554
No 127
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=96.93 E-value=0.0018 Score=58.57 Aligned_cols=64 Identities=17% Similarity=0.136 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhccC---CCCCcCHHHHhhhhC--CC--CCH-HHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhh
Q 002830 153 ELWRLVESRFESLA---EDGLLAREDFGECIG--MV--DTK-EFAVGIFDALARRRGQKIGKITKEELREFWLQI 219 (875)
Q Consensus 153 ~~w~~v~~~F~~l~---~dG~L~~~eF~~~~g--~~--~~~-~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~ 219 (875)
.....+.+.|+.+| ++|.|+++||+.++. ++ .+. +-++.|+..+| .|+ ||.|||+||+..+..+
T Consensus 5 ~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D-~d~--DG~I~F~EF~~l~~~l 76 (89)
T cd05022 5 KAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLD-VNQ--DSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhC-CCC--CCCCcHHHHHHHHHHH
Confidence 34566677777766 678999999999862 22 233 66899997644 466 9999999999877544
No 128
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=96.92 E-value=0.0026 Score=57.42 Aligned_cols=64 Identities=17% Similarity=0.265 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhccC---CCC-CcCHHHHhhhhC--------CCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhh
Q 002830 153 ELWRLVESRFESLA---EDG-LLAREDFGECIG--------MVDTKEFAVGIFDALARRRGQKIGKITKEELREFWLQI 219 (875)
Q Consensus 153 ~~w~~v~~~F~~l~---~dG-~L~~~eF~~~~g--------~~~~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~ 219 (875)
.....+.+.|+.+| +|| .|+.+||+.++. ...+++-++++++.+ |.++ +|.|+|+||+..+..+
T Consensus 5 ~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~-D~n~--dG~v~f~eF~~li~~~ 80 (88)
T cd05027 5 KAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETL-DSDG--DGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHh-CCCC--CCcCcHHHHHHHHHHH
Confidence 45567777777775 788 699999999863 235667799999865 4465 9999999999887654
No 129
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=96.90 E-value=0.0025 Score=65.61 Aligned_cols=116 Identities=22% Similarity=0.182 Sum_probs=78.7
Q ss_pred HHhcccccccccCC-CcchHHHH-HHHHHHHhccCCCCCcCHHHHhhhhCC---CCCHHHHHHHHHHHHhhCCCCCCccc
Q 002830 134 RALNGLRFISKTAG-ASDAEELW-RLVESRFESLAEDGLLAREDFGECIGM---VDTKEFAVGIFDALARRRGQKIGKIT 208 (875)
Q Consensus 134 ~~~~~l~~i~~~~~-~~~~~~~w-~~v~~~F~~l~~dG~L~~~eF~~~~g~---~~~~~f~~~lF~al~~~~~~~~g~I~ 208 (875)
..+...|-|-+... ..++ +.. ..|.+.|+ -+.||.|+-+||-..+.+ +...+.+.=.|+ |.|.|| +|.|+
T Consensus 44 ~~~~~F~~i~~~~fp~gd~-~~y~~~vF~~fD-~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~-lyD~dg--dG~It 118 (193)
T KOG0044|consen 44 LTLEEFREIYASFFPDGDA-SKYAELVFRTFD-KNKDGTIDFLEFICALSLTSRGTLEEKLKWAFR-LYDLDG--DGYIT 118 (193)
T ss_pred cCHHHHHHHHHHHCCCCCH-HHHHHHHHHHhc-ccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhhe-eecCCC--CceEc
Confidence 33444555554422 1211 233 35555555 238999999998777522 123456666787 687788 99999
Q ss_pred HHHHHHHHHh---hc--------CCChhhhHHHHHhhhccccceEeeccCCCCccCHHHHHHHHHh
Q 002830 209 KEELREFWLQ---IS--------DQSFDARLQIFFDIVDELGEFTSYYFPCKRVSHLWQLETLLLQ 263 (875)
Q Consensus 209 f~Ef~~~~~~---~~--------~~s~d~kL~~~F~myD~v~eii~l~a~~nG~I~~~el~~ll~~ 263 (875)
++|+++.+.. +. +.+.+++...+|+..| .|.||.||++|+......
T Consensus 119 ~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D---------~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 119 KEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMD---------KNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred HHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcC---------CCCCCcccHHHHHHHhhh
Confidence 9999987743 22 2235678899999999 999999999999886654
No 130
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=96.87 E-value=0.0037 Score=56.61 Aligned_cols=68 Identities=18% Similarity=0.232 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhhCCCCCC-cccHHHHHHHHHh-hc----CCChhhhHHHHHhhhccccceEeeccCCCCccCHHHHHHH
Q 002830 187 EFAVGIFDALARRRGQKIG-KITKEELREFWLQ-IS----DQSFDARLQIFFDIVDELGEFTSYYFPCKRVSHLWQLETL 260 (875)
Q Consensus 187 ~f~~~lF~al~~~~~~~~g-~I~f~Ef~~~~~~-~~----~~s~d~kL~~~F~myD~v~eii~l~a~~nG~I~~~el~~l 260 (875)
+-+.++|+.++|+++ +| .|+.+||..++.. +. ....++.++.+|+.+| .+.+|.|+++||..+
T Consensus 9 ~~l~~~F~~fDd~dg--~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D---------~d~~G~I~f~eF~~l 77 (92)
T cd05025 9 ETLINVFHAHSGKEG--DKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELD---------ENGDGEVDFQEFVVL 77 (92)
T ss_pred HHHHHHHHHHhcccC--CCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHC---------CCCCCcCcHHHHHHH
Confidence 347789987655777 99 5999999999964 32 2234567999999999 999999999999998
Q ss_pred HHhcc
Q 002830 261 LLQRD 265 (875)
Q Consensus 261 l~~~~ 265 (875)
+..+-
T Consensus 78 ~~~~~ 82 (92)
T cd05025 78 VAALT 82 (92)
T ss_pred HHHHH
Confidence 87653
No 131
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=96.86 E-value=0.0025 Score=57.73 Aligned_cols=64 Identities=13% Similarity=0.228 Sum_probs=48.3
Q ss_pred HHHHHHHHHhccC---CCC-CcCHHHHhhhhC--C------CCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhc
Q 002830 154 LWRLVESRFESLA---EDG-LLAREDFGECIG--M------VDTKEFAVGIFDALARRRGQKIGKITKEELREFWLQIS 220 (875)
Q Consensus 154 ~w~~v~~~F~~l~---~dG-~L~~~eF~~~~g--~------~~~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~~ 220 (875)
.-..+.+.|+.+| ++| .|+++||..++. + .++++.++++|+.+ |.++ +|.|+|+||+.++..+.
T Consensus 7 ~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~-D~d~--~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 7 AMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKEL-DENG--DGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHH-CCCC--CCcCcHHHHHHHHHHHH
Confidence 3456666777774 789 599999999973 2 24667899999864 5465 99999999998876543
No 132
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=96.83 E-value=0.0025 Score=60.46 Aligned_cols=57 Identities=18% Similarity=0.208 Sum_probs=48.5
Q ss_pred HHHHHHHhccC--CCCCcCHHHHhhhhCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 002830 156 RLVESRFESLA--EDGLLAREDFGECIGMVDTKEFAVGIFDALARRRGQKIGKITKEELREFW 216 (875)
Q Consensus 156 ~~v~~~F~~l~--~dG~L~~~eF~~~~g~~~~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~ 216 (875)
.+|...|.++| +||.|+++|+..+. +...+..+.++|+. .|.++ ||.||++||...+
T Consensus 48 ~~l~w~F~~lD~d~DG~Ls~~EL~~~~-l~~~e~~~~~f~~~-~D~n~--Dg~IS~~Ef~~cl 106 (116)
T cd00252 48 DPVGWMFNQLDGNYDGKLSHHELAPIR-LDPNEHCIKPFFES-CDLDK--DGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHCCCCCCcCCHHHHHHHH-ccchHHHHHHHHHH-HCCCC--CCCCCHHHHHHHH
Confidence 58888999998 99999999999886 54556788999985 55566 9999999999987
No 133
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=96.77 E-value=0.0014 Score=46.56 Aligned_cols=28 Identities=11% Similarity=0.062 Sum_probs=25.7
Q ss_pred HHHHHhhhccccceEeeccCCCCccCHHHHHHHHHhc
Q 002830 228 LQIFFDIVDELGEFTSYYFPCKRVSHLWQLETLLLQR 264 (875)
Q Consensus 228 L~~~F~myD~v~eii~l~a~~nG~I~~~el~~ll~~~ 264 (875)
++.+|+.|| .|+||+|+++||..++..+
T Consensus 2 ~~~~F~~~D---------~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 2 LKEAFREFD---------KDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHS---------TTSSSEEEHHHHHHHHHHT
T ss_pred HHHHHHHHC---------CCCCCcCCHHHHHHHHHhC
Confidence 688999999 9999999999999998753
No 134
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=96.74 E-value=0.0034 Score=50.47 Aligned_cols=56 Identities=21% Similarity=0.337 Sum_probs=45.7
Q ss_pred HHHHHhccC--CCCCcCHHHHhhhh---CCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 002830 158 VESRFESLA--EDGLLAREDFGECI---GMVDTKEFAVGIFDALARRRGQKIGKITKEELREFW 216 (875)
Q Consensus 158 v~~~F~~l~--~dG~L~~~eF~~~~---g~~~~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~ 216 (875)
+.+.|+.+| .+|.|+.+||..++ +...+.+.+..+|+. .+.++ +|.|+++||..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~-~~~~~--~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIRE-VDKDG--DGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHH-hCCCC--CCeEeHHHHHHHh
Confidence 566788877 78999999999986 666778889999985 55455 8999999998764
No 135
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=96.74 E-value=0.0059 Score=55.78 Aligned_cols=65 Identities=11% Similarity=0.047 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCChhhhHHHHHhhhccccceEeeccCCCCccCHHHHHHHHHhccc
Q 002830 188 FAVGIFDALARRRGQKIGKITKEELREFWLQISDQSFDARLQIFFDIVDELGEFTSYYFPCKRVSHLWQLETLLLQRDT 266 (875)
Q Consensus 188 f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~~~~s~d~kL~~~F~myD~v~eii~l~a~~nG~I~~~el~~ll~~~~~ 266 (875)
...++|+. +|.++ +|.|+++|+..++... +-.++.++.+|+++| .+.+|+|+++||..++....+
T Consensus 11 ~l~~~F~~-~D~d~--~G~Is~~el~~~l~~~--~~~~~ev~~i~~~~d---------~~~~g~I~~~eF~~~~~~~~~ 75 (96)
T smart00027 11 KYEQIFRS-LDKNQ--DGTVTGAQAKPILLKS--GLPQTLLAKIWNLAD---------IDNDGELDKDEFALAMHLIYR 75 (96)
T ss_pred HHHHHHHH-hCCCC--CCeEeHHHHHHHHHHc--CCCHHHHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHHH
Confidence 46778875 55566 9999999999998663 334677899999999 999999999999998876544
No 136
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=96.73 E-value=0.005 Score=56.05 Aligned_cols=67 Identities=12% Similarity=0.162 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHh-h----cCCChhhhHHHHHhhhccccceEeeccCCCCccCHHHHHHHHH
Q 002830 188 FAVGIFDALARRRGQKIGKITKEELREFWLQ-I----SDQSFDARLQIFFDIVDELGEFTSYYFPCKRVSHLWQLETLLL 262 (875)
Q Consensus 188 f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~-~----~~~s~d~kL~~~F~myD~v~eii~l~a~~nG~I~~~el~~ll~ 262 (875)
-..++|..++++++ ++|.|+.+|+..++.. + ...-.++.++.+|+.+| .+.+|.|+++||..++.
T Consensus 9 ~l~~~F~~~D~~dg-~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D---------~~~dg~I~f~eF~~l~~ 78 (94)
T cd05031 9 SLILTFHRYAGKDG-DKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLD---------QNRDGKVNFEEFVSLVA 78 (94)
T ss_pred HHHHHHHHHhccCC-CCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhC---------CCCCCcCcHHHHHHHHH
Confidence 35678886665453 1599999999999864 2 22334678999999999 99999999999999887
Q ss_pred hc
Q 002830 263 QR 264 (875)
Q Consensus 263 ~~ 264 (875)
..
T Consensus 79 ~~ 80 (94)
T cd05031 79 GL 80 (94)
T ss_pred HH
Confidence 64
No 137
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=96.62 E-value=0.0043 Score=55.88 Aligned_cols=64 Identities=14% Similarity=0.230 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhccC----CCCCcCHHHHhhhhC-C---CCC----HHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhh
Q 002830 153 ELWRLVESRFESLA----EDGLLAREDFGECIG-M---VDT----KEFAVGIFDALARRRGQKIGKITKEELREFWLQI 219 (875)
Q Consensus 153 ~~w~~v~~~F~~l~----~dG~L~~~eF~~~~g-~---~~~----~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~ 219 (875)
.....+-..|++.+ ++|.|+++||+.++. . ..+ ++.++++|..+ |.++ +|.|+|+||+..+..+
T Consensus 5 ~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~-D~d~--dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 5 KAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDL-DTNQ--DGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHc-CCCC--CCcCcHHHHHHHHHHH
Confidence 46778889999998 368999999999984 1 122 67899999864 4465 9999999999988654
No 138
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=96.59 E-value=0.0063 Score=55.06 Aligned_cols=66 Identities=17% Similarity=0.125 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHh-hcCCChh-hhHHHHHhhhccccceEeeccCCCCccCHHHHHHHHHhc
Q 002830 188 FAVGIFDALARRRGQKIGKITKEELREFWLQ-ISDQSFD-ARLQIFFDIVDELGEFTSYYFPCKRVSHLWQLETLLLQR 264 (875)
Q Consensus 188 f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~-~~~~s~d-~kL~~~F~myD~v~eii~l~a~~nG~I~~~el~~ll~~~ 264 (875)
-+.++|..++.+++ +|+|+..||...+.. +...-.+ +.++.+++..| .|.||.|+++||..++..+
T Consensus 9 ~l~~~F~~fd~~~~--~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D---------~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 9 TLVSNFHKASVKGG--KESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLD---------VNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHhCCCC--CCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhC---------CCCCCCCcHHHHHHHHHHH
Confidence 35678886443255 999999999999976 6543223 67999999999 9999999999999988765
No 139
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=96.47 E-value=0.0077 Score=57.22 Aligned_cols=61 Identities=18% Similarity=0.171 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCChhhhHHHHHhhhccccceEeeccCCCCccCHHHHHHHHH
Q 002830 186 KEFAVGIFDALARRRGQKIGKITKEELREFWLQISDQSFDARLQIFFDIVDELGEFTSYYFPCKRVSHLWQLETLLL 262 (875)
Q Consensus 186 ~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~~~~s~d~kL~~~F~myD~v~eii~l~a~~nG~I~~~el~~ll~ 262 (875)
+.-+.-.|..+ |.|+ ||.|+.+|+..+. -...+.....+|+.|| +|.||+||++|+...+.
T Consensus 47 ~~~l~w~F~~l-D~d~--DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D---------~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 47 KDPVGWMFNQL-DGNY--DGKLSHHELAPIR----LDPNEHCIKPFFESCD---------LDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHH-CCCC--CCcCCHHHHHHHH----ccchHHHHHHHHHHHC---------CCCCCCCCHHHHHHHHh
Confidence 34578889865 4466 9999999999876 2234677889999999 99999999999999883
No 140
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=96.38 E-value=0.012 Score=53.16 Aligned_cols=65 Identities=15% Similarity=0.203 Sum_probs=51.3
Q ss_pred HHHHHHHHHhhCCCCCC-cccHHHHHHHHHhh-----cCCChhhhHHHHHhhhccccceEeeccCCCCccCHHHHHHHHH
Q 002830 189 AVGIFDALARRRGQKIG-KITKEELREFWLQI-----SDQSFDARLQIFFDIVDELGEFTSYYFPCKRVSHLWQLETLLL 262 (875)
Q Consensus 189 ~~~lF~al~~~~~~~~g-~I~f~Ef~~~~~~~-----~~~s~d~kL~~~F~myD~v~eii~l~a~~nG~I~~~el~~ll~ 262 (875)
...+|...++++| ++ +|+.+||..++... ..+..++.+..+++-+| .|.||.|+++||..++.
T Consensus 11 l~~~F~~y~~~dg--~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D---------~d~DG~I~f~EF~~l~~ 79 (89)
T cd05023 11 LIAVFQKYAGKDG--DSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLD---------LNSDGQLDFQEFLNLIG 79 (89)
T ss_pred HHHHHHHHhccCC--CcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcC---------CCCCCcCcHHHHHHHHH
Confidence 4577876576666 54 99999999999653 33344567888999999 99999999999999886
Q ss_pred hc
Q 002830 263 QR 264 (875)
Q Consensus 263 ~~ 264 (875)
..
T Consensus 80 ~l 81 (89)
T cd05023 80 GL 81 (89)
T ss_pred HH
Confidence 64
No 141
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=96.37 E-value=0.011 Score=49.40 Aligned_cols=61 Identities=18% Similarity=0.126 Sum_probs=49.5
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCChhhhHHHHHhhhccccceEeeccCCCCccCHHHHHHHHHhc
Q 002830 190 VGIFDALARRRGQKIGKITKEELREFWLQISDQSFDARLQIFFDIVDELGEFTSYYFPCKRVSHLWQLETLLLQR 264 (875)
Q Consensus 190 ~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~~~~s~d~kL~~~F~myD~v~eii~l~a~~nG~I~~~el~~ll~~~ 264 (875)
.++|+. .|.++ +|.|+.+|+..++..+. -.++.++.+|+.+| .+.+|.|+++|+..++..+
T Consensus 2 ~~~F~~-~D~~~--~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d---------~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRS-LDPDG--DGLISGDEARPFLGKSG--LPRSVLAQIWDLAD---------TDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHH-hCCCC--CCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhc---------CCCCCcCCHHHHHHHHHHH
Confidence 367875 45566 99999999999887652 25667899999999 9999999999999877543
No 142
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=96.34 E-value=0.013 Score=65.65 Aligned_cols=93 Identities=15% Similarity=0.195 Sum_probs=74.2
Q ss_pred HHHHHHHhccC--CCCCcCHHHHhhh---hCCC-CCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCChhhhHH
Q 002830 156 RLVESRFESLA--EDGLLAREDFGEC---IGMV-DTKEFAVGIFDALARRRGQKIGKITKEELREFWLQISDQSFDARLQ 229 (875)
Q Consensus 156 ~~v~~~F~~l~--~dG~L~~~eF~~~---~g~~-~~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~~~~s~d~kL~ 229 (875)
.+...-|+.+| +||.++-.++.+. ++.. ...+.+..+|.+.+- +. ||.+||+||...+.. .|.+|-
T Consensus 14 ~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~-~~--dg~vDy~eF~~Y~~~-----~E~~l~ 85 (463)
T KOG0036|consen 14 IRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDA-NR--DGRVDYSEFKRYLDN-----KELELY 85 (463)
T ss_pred HHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhccc-Cc--CCcccHHHHHHHHHH-----hHHHHH
Confidence 35666677776 8999999999854 4444 566789999987554 44 999999999998863 477899
Q ss_pred HHHhhhccccceEeeccCCCCccCHHHHHHHHHhcc
Q 002830 230 IFFDIVDELGEFTSYYFPCKRVSHLWQLETLLLQRD 265 (875)
Q Consensus 230 ~~F~myD~v~eii~l~a~~nG~I~~~el~~ll~~~~ 265 (875)
.+|+--| .+.||.|..+|+..-+..+.
T Consensus 86 ~~F~~iD---------~~hdG~i~~~Ei~~~l~~~g 112 (463)
T KOG0036|consen 86 RIFQSID---------LEHDGKIDPNEIWRYLKDLG 112 (463)
T ss_pred HHHhhhc---------cccCCccCHHHHHHHHHHhC
Confidence 9999999 99999999999988777654
No 143
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=96.29 E-value=0.024 Score=55.92 Aligned_cols=97 Identities=19% Similarity=0.188 Sum_probs=78.0
Q ss_pred HHHHHHHHHhccCCCCCcCHHHHhhh----hCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCChhhhHH
Q 002830 154 LWRLVESRFESLAEDGLLAREDFGEC----IGMVDTKEFAVGIFDALARRRGQKIGKITKEELREFWLQISDQSFDARLQ 229 (875)
Q Consensus 154 ~w~~v~~~F~~l~~dG~L~~~eF~~~----~g~~~~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~~~~s~d~kL~ 229 (875)
...++-..+++- +.|.|+-++|... +|..++++-+...|+ ++|-|+ +|.||+.+|......+...=.|+.|+
T Consensus 70 ei~kll~d~dk~-~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afr-l~D~D~--~Gkis~~~lkrvakeLgenltD~El~ 145 (172)
T KOG0028|consen 70 EILKLLADVDKE-GSGKITFEDFRRVMTVKLGERDTKEEIKKAFR-LFDDDK--TGKISQRNLKRVAKELGENLTDEELM 145 (172)
T ss_pred HHHHHHHhhhhc-cCceechHHHHHHHHHHHhccCcHHHHHHHHH-cccccC--CCCcCHHHHHHHHHHhCccccHHHHH
Confidence 334444433321 6899999999887 477789999999998 565576 99999999999888888776788999
Q ss_pred HHHhhhccccceEeeccCCCCccCHHHHHHHHHh
Q 002830 230 IFFDIVDELGEFTSYYFPCKRVSHLWQLETLLLQ 263 (875)
Q Consensus 230 ~~F~myD~v~eii~l~a~~nG~I~~~el~~ll~~ 263 (875)
..-+=.| .|.||.|+.+||-.+++.
T Consensus 146 eMIeEAd---------~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 146 EMIEEAD---------RDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HHHHHhc---------ccccccccHHHHHHHHhc
Confidence 8888888 999999999999888764
No 144
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=96.28 E-value=0.013 Score=52.44 Aligned_cols=66 Identities=12% Similarity=0.182 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhh-CCCCCCcccHHHHHHHHHh-hcC----CChhhhHHHHHhhhccccceEeeccCCCCccCHHHHHHHH
Q 002830 188 FAVGIFDALARR-RGQKIGKITKEELREFWLQ-ISD----QSFDARLQIFFDIVDELGEFTSYYFPCKRVSHLWQLETLL 261 (875)
Q Consensus 188 f~~~lF~al~~~-~~~~~g~I~f~Ef~~~~~~-~~~----~s~d~kL~~~F~myD~v~eii~l~a~~nG~I~~~el~~ll 261 (875)
-+.++|..++.+ ++ +|.|+.+||..++.. +.. ...++.++.+|+.+| .+.+|.|+++||..++
T Consensus 9 ~l~~~F~~~D~~~~~--~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d---------~~~~g~I~f~eF~~~~ 77 (88)
T cd00213 9 TIIDVFHKYSGKEGD--KDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLD---------VNKDGKVDFQEFLVLI 77 (88)
T ss_pred HHHHHHHHHhhccCC--CCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhc---------cCCCCcCcHHHHHHHH
Confidence 366789865443 56 999999999999865 321 123677999999999 9999999999999988
Q ss_pred Hhc
Q 002830 262 LQR 264 (875)
Q Consensus 262 ~~~ 264 (875)
...
T Consensus 78 ~~~ 80 (88)
T cd00213 78 GKL 80 (88)
T ss_pred HHH
Confidence 654
No 145
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=96.24 E-value=0.0044 Score=44.42 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=24.5
Q ss_pred hHHHHHhhhccccceEeeccCCCCccCHHHHHHHHH
Q 002830 227 RLQIFFDIVDELGEFTSYYFPCKRVSHLWQLETLLL 262 (875)
Q Consensus 227 kL~~~F~myD~v~eii~l~a~~nG~I~~~el~~ll~ 262 (875)
+++.+|++|| .|.||+|+.+||..++.
T Consensus 1 ~l~~~F~~~D---------~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFD---------KDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH----------TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHC---------CCCCCcCcHHHHHHHHH
Confidence 5889999999 99999999999999987
No 146
>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]
Probab=96.10 E-value=1.3 Score=47.94 Aligned_cols=122 Identities=19% Similarity=0.168 Sum_probs=82.8
Q ss_pred eeeeeEEEEEEeeCCCEEEEEEecCCCcc----cCCCcEEEEECCCCCC--------------------cccccceeecC
Q 002830 548 GHFSAKDLKVSVLPGNVLSIVMSKPNGFR----YRSGQYIFLQCPTISS--------------------FEWHPFSITSA 603 (875)
Q Consensus 548 ~~~~~~i~~v~~l~~~vl~L~~~~p~~~~----ykpGQyvfL~~p~is~--------------------~e~HPFTItSa 603 (875)
+.+.++|+.+..++.+.+++++..|.... ...+||+.|-+|..+. .-.++|||.+.
T Consensus 16 ~~~~~~V~~~~~lsP~m~Rv~~~g~~l~~f~~~~~~d~~ikL~fp~~~~~~~~~~~~~~~~~~~~~~~r~~~R~YTiR~~ 95 (265)
T COG2375 16 RLHEATVTRVTQLSPHMVRVVLGGEGLAGFASLGFGDQHIKLFFPPPDGDPPRLPVLEERGAVPPGAQRPPQRTYTIRAV 95 (265)
T ss_pred cceEEEEEEEEecCCCeEEEEEecccccccccccCCCceeEEEecCccCCCCCCcccccccccCccccCCCcccceeeee
Confidence 34678899999999999999999887433 3444599999985321 12688999765
Q ss_pred -CCCCeEEEEEEec---CCCcHHHHHHhhhcccccccCCccccccCCCCCCCCCEEEEECcCCCCCCCCCCCCeEEEEEc
Q 002830 604 -PGDDHLSVHIRIV---GDWTHELKQVFTEDKDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAAAQDYSNYDVLLLVGL 679 (875)
Q Consensus 604 -P~dd~lsl~IR~~---G~wT~~L~~~~~~~~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~~~~~~~yd~vlLVag 679 (875)
++...+.|-+=.. |.-++- + ..+ ++ ...+.|-||=|.... ...++..||||=
T Consensus 96 d~~~~e~~vDfVlH~~~gpas~W----A-~~a----~~--------------GD~l~i~GP~g~~~p-~~~~~~~lLigD 151 (265)
T COG2375 96 DAAAGELDVDFVLHGEGGPASRW----A-RTA----QP--------------GDTLTIMGPRGSLVP-PEAADWYLLIGD 151 (265)
T ss_pred cccccEEEEEEEEcCCCCcchhh----H-hhC----CC--------------CCEEEEeCCCCCCCC-CCCcceEEEecc
Confidence 3334443333222 211111 0 111 23 389999999999543 467899999999
Q ss_pred CcCHHHHHHHHHHH
Q 002830 680 GIGATPFISILRDL 693 (875)
Q Consensus 680 GiGITP~iSiLkdl 693 (875)
=+++-.+..||.++
T Consensus 152 etAlPAIa~iLE~l 165 (265)
T COG2375 152 ETALPAIARILETL 165 (265)
T ss_pred ccchHHHHHHHHhC
Confidence 99888888888775
No 147
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=96.07 E-value=0.021 Score=51.14 Aligned_cols=63 Identities=14% Similarity=0.178 Sum_probs=45.1
Q ss_pred HHHHHHHHHhccC----CCCCcCHHHHhhhhC----CC----CCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhh
Q 002830 154 LWRLVESRFESLA----EDGLLAREDFGECIG----MV----DTKEFAVGIFDALARRRGQKIGKITKEELREFWLQI 219 (875)
Q Consensus 154 ~w~~v~~~F~~l~----~dG~L~~~eF~~~~g----~~----~~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~ 219 (875)
+.+.+.+.|..+| ++|.|+.+||..++. .. .++..+++++..+ +.++ +|.|+|+||+..+...
T Consensus 6 ~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~-d~~~--~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 6 AIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDL-DVNK--DGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHh-ccCC--CCcCcHHHHHHHHHHH
Confidence 4444544444443 679999999999862 11 2467899999864 4455 8999999999988655
No 148
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=96.00 E-value=0.027 Score=50.86 Aligned_cols=66 Identities=23% Similarity=0.305 Sum_probs=52.3
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHh---hcCCChhhhHHHHHhhhccccceEeeccCCCCccCHHHHHHHHHhc
Q 002830 189 AVGIFDALARRRGQKIGKITKEELREFWLQ---ISDQSFDARLQIFFDIVDELGEFTSYYFPCKRVSHLWQLETLLLQR 264 (875)
Q Consensus 189 ~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~---~~~~s~d~kL~~~F~myD~v~eii~l~a~~nG~I~~~el~~ll~~~ 264 (875)
.-.+|+..+.+++ ++|.|+.+||...+.. +...-.++.+..+|+-.| .|.+|.|+++||..++...
T Consensus 12 ~i~~F~~y~~~~~-~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D---------~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 12 LVAIFHKYSGREG-DKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLD---------RNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHccCC-CCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---------CCCCCCCcHHHHHHHHHHH
Confidence 4578887665454 3799999999999963 334445678888999999 9999999999999888654
No 149
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=95.96 E-value=0.0085 Score=67.33 Aligned_cols=83 Identities=16% Similarity=0.129 Sum_probs=59.0
Q ss_pred CcCHHHHhhhh--CCCCC-HHHHHHHHHHHHhhCC----------------CCCCcccHHHHHHHHHhhcCCChhhhHHH
Q 002830 170 LLAREDFGECI--GMVDT-KEFAVGIFDALARRRG----------------QKIGKITKEELREFWLQISDQSFDARLQI 230 (875)
Q Consensus 170 ~L~~~eF~~~~--g~~~~-~~f~~~lF~al~~~~~----------------~~~g~I~f~Ef~~~~~~~~~~s~d~kL~~ 230 (875)
.++.++|-..+ |.+.+ .-.++++ ..++++.. .++|-|+|.||+=.+-.++. ++.-.++
T Consensus 161 yMTP~DFlrSi~p~~~qpe~~gld~~-k~~~~~~~~~~~~~~~~~siF~~lg~~GLIsfSdYiFLlTlLS~--p~~~F~I 237 (489)
T KOG2643|consen 161 YMTPEDFLRSITPGAKQPERLGLDKL-KDIDEKLKKELPKFSDGDSIFYKLGESGLISFSDYIFLLTLLSI--PERNFRI 237 (489)
T ss_pred EeCHHHHHHhcCCCCCCchhhhhHHH-hhhchhccccCccCCCCCeeEEEcCCCCeeeHHHHHHHHHHHcc--Cccccee
Confidence 57888887765 55444 2333333 22333320 23788999999987777765 4667889
Q ss_pred HHhhhccccceEeeccCCCCccCHHHHHHHHHhc
Q 002830 231 FFDIVDELGEFTSYYFPCKRVSHLWQLETLLLQR 264 (875)
Q Consensus 231 ~F~myD~v~eii~l~a~~nG~I~~~el~~ll~~~ 264 (875)
+|+|+| .|+||.|+.+||+++..-+
T Consensus 238 AFKMFD---------~dgnG~IdkeEF~~v~~li 262 (489)
T KOG2643|consen 238 AFKMFD---------LDGNGEIDKEEFETVQQLI 262 (489)
T ss_pred eeeeee---------cCCCCcccHHHHHHHHHHH
Confidence 999999 9999999999999987433
No 150
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=95.95 E-value=0.013 Score=54.63 Aligned_cols=64 Identities=23% Similarity=0.234 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhccC-CCCCcCHHHHhhhh-CCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhh
Q 002830 153 ELWRLVESRFESLA-EDGLLAREDFGECI-GMVDTKEFAVGIFDALARRRGQKIGKITKEELREFWLQI 219 (875)
Q Consensus 153 ~~w~~v~~~F~~l~-~dG~L~~~eF~~~~-g~~~~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~ 219 (875)
++..+..+.|+.++ .+|.|+-++..+++ ..+.+.+.+.+|++ |.|.++ +|.+|++||..++..+
T Consensus 7 ~e~~~y~~~F~~l~~~~g~isg~~a~~~f~~S~L~~~~L~~IW~-LaD~~~--dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 7 EEKQKYDQIFQSLDPQDGKISGDQAREFFMKSGLPRDVLAQIWN-LADIDN--DGKLDFEEFAIAMHLI 72 (104)
T ss_dssp CHHHHHHHHHHCTSSSTTEEEHHHHHHHHHHTTSSHHHHHHHHH-HH-SSS--SSEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHh-hhcCCC--CCcCCHHHHHHHHHHH
Confidence 35788999999999 89999999999987 33446788999997 898887 9999999999998765
No 151
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=95.92 E-value=0.047 Score=61.37 Aligned_cols=122 Identities=20% Similarity=0.299 Sum_probs=81.0
Q ss_pred HHHhhhhccchHHHHhcccccccccCCCcchHHHHHHHHHHHhccC--CCCCcCHHHHhhhh----CCC-----------
Q 002830 121 IKAKLQRARSGAKRALNGLRFISKTAGASDAEELWRLVESRFESLA--EDGLLAREDFGECI----GMV----------- 183 (875)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~w~~v~~~F~~l~--~dG~L~~~eF~~~~----g~~----------- 183 (875)
.+.|+++..+. |||.||-=- . +-=..|++.|++.| +.|.|+.+..+.|+ |++
T Consensus 440 lrqR~~~vEeS---Alk~Lrerl----~----s~~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla 508 (631)
T KOG0377|consen 440 LRQRMGIVEES---ALKELRERL----R----SHRSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLA 508 (631)
T ss_pred HHHHhhHHHHH---HHHHHHHHH----H----hhhhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhcc
Confidence 45678888774 455554100 0 12247889999999 88999999998883 221
Q ss_pred ---C--------------------------------CHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcC---CCh-
Q 002830 184 ---D--------------------------------TKEFAVGIFDALARRRGQKIGKITKEELREFWLQISD---QSF- 224 (875)
Q Consensus 184 ---~--------------------------------~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~~~---~s~- 224 (875)
+ .+.-++-+|+. -|.|+ +|.|+.+||.++|..++. +..
T Consensus 509 ~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetLYr~ks~LetiF~~-iD~D~--SG~isldEF~~a~~l~~sh~~~~i~ 585 (631)
T KOG0377|consen 509 NGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETLYRNKSSLETIFNI-IDADN--SGEISLDEFRTAWKLLSSHMNGAIS 585 (631)
T ss_pred CCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHHHhchhhHHHHHHH-hccCC--CCceeHHHHHHHHHHHHhhcCCCcC
Confidence 0 00123457774 44466 999999999999987653 222
Q ss_pred hhhHHHHHhhhccccceEeeccCCCCccCHHHHHHHHHhcc
Q 002830 225 DARLQIFFDIVDELGEFTSYYFPCKRVSHLWQLETLLLQRD 265 (875)
Q Consensus 225 d~kL~~~F~myD~v~eii~l~a~~nG~I~~~el~~ll~~~~ 265 (875)
++.+-..=.+.| .++||.|++.||-+.+.-.+
T Consensus 586 ~~~i~~la~~mD---------~NkDG~IDlNEfLeAFrlvd 617 (631)
T KOG0377|consen 586 DDEILELARSMD---------LNKDGKIDLNEFLEAFRLVD 617 (631)
T ss_pred HHHHHHHHHhhc---------cCCCCcccHHHHHHHHhhhc
Confidence 344444557778 99999999999987664433
No 152
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=95.85 E-value=0.01 Score=42.16 Aligned_cols=27 Identities=30% Similarity=0.382 Sum_probs=22.3
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHh
Q 002830 189 AVGIFDALARRRGQKIGKITKEELREFWLQ 218 (875)
Q Consensus 189 ~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~ 218 (875)
++++|+. +|+|+ ||.||++||..++..
T Consensus 2 ~~~~F~~-~D~d~--dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFRE-FDKDG--DGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHH-HSTTS--SSEEEHHHHHHHHHH
T ss_pred HHHHHHH-HCCCC--CCcCCHHHHHHHHHh
Confidence 5789984 66687 999999999998764
No 153
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=95.51 E-value=0.038 Score=49.79 Aligned_cols=67 Identities=12% Similarity=0.270 Sum_probs=53.0
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHH-hhcC----CChhhhHHHHHhhhccccceEeeccCCCCccCHHHHHHHHHh
Q 002830 189 AVGIFDALARRRGQKIGKITKEELREFWL-QISD----QSFDARLQIFFDIVDELGEFTSYYFPCKRVSHLWQLETLLLQ 263 (875)
Q Consensus 189 ~~~lF~al~~~~~~~~g~I~f~Ef~~~~~-~~~~----~s~d~kL~~~F~myD~v~eii~l~a~~nG~I~~~el~~ll~~ 263 (875)
+-++|...+.++| .+|.|+.+||...+. .+.+ +..++.++.+|+-+| .+.+|.|+++||..++..
T Consensus 10 ~~~~f~~y~~~~~-~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D---------~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 10 IINVFHQYSVRKG-HPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLD---------TNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHHhccCC-CcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcC---------CCCCCcCcHHHHHHHHHH
Confidence 5678887676554 479999999999985 3332 223788999999999 999999999999998876
Q ss_pred cc
Q 002830 264 RD 265 (875)
Q Consensus 264 ~~ 265 (875)
+.
T Consensus 80 ~~ 81 (88)
T cd05030 80 VG 81 (88)
T ss_pred HH
Confidence 53
No 154
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=95.41 E-value=0.048 Score=62.09 Aligned_cols=98 Identities=20% Similarity=0.261 Sum_probs=76.4
Q ss_pred HHHHHHHHHhccC---CCC--CcCHHHHhhh-hCC---CCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCh
Q 002830 154 LWRLVESRFESLA---EDG--LLAREDFGEC-IGM---VDTKEFAVGIFDALARRRGQKIGKITKEELREFWLQISDQSF 224 (875)
Q Consensus 154 ~w~~v~~~F~~l~---~dG--~L~~~eF~~~-~g~---~~~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~~~~s~ 224 (875)
+-++|...|.+++ .+| ..+.++|-.- +|+ +..++-..+|...++|.-+ ||-|||+||..+=+.++- +
T Consensus 31 ~~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tK--Dglisf~eF~afe~~lC~--p 106 (694)
T KOG0751|consen 31 DPKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTK--DGLISFQEFRAFESVLCA--P 106 (694)
T ss_pred ChHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcc--cccccHHHHHHHHhhccC--c
Confidence 4467888888776 344 7889999765 343 3344456667766777555 999999999998777775 5
Q ss_pred hhhHHHHHhhhccccceEeeccCCCCccCHHHHHHHHHhc
Q 002830 225 DARLQIFFDIVDELGEFTSYYFPCKRVSHLWQLETLLLQR 264 (875)
Q Consensus 225 d~kL~~~F~myD~v~eii~l~a~~nG~I~~~el~~ll~~~ 264 (875)
|.+-..+|.++| ..+||.++.++++.++.+.
T Consensus 107 Dal~~~aFqlFD---------r~~~~~vs~~~~~~if~~t 137 (694)
T KOG0751|consen 107 DALFEVAFQLFD---------RLGNGEVSFEDVADIFGQT 137 (694)
T ss_pred hHHHHHHHHHhc---------ccCCCceehHHHHHHHhcc
Confidence 889999999999 9999999999999998764
No 155
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=95.22 E-value=0.04 Score=63.05 Aligned_cols=66 Identities=23% Similarity=0.124 Sum_probs=52.5
Q ss_pred HHhhhhCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCChhhhHHHHHhhhccccceEeeccCCCCccCH
Q 002830 175 DFGECIGMVDTKEFAVGIFDALARRRGQKIGKITKEELREFWLQISDQSFDARLQIFFDIVDELGEFTSYYFPCKRVSHL 254 (875)
Q Consensus 175 eF~~~~g~~~~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~~~~s~d~kL~~~F~myD~v~eii~l~a~~nG~I~~ 254 (875)
.++.+-|...-+..+..+|. ++|.++ ||.|+++||+. ...+|+.+| .|+||.|+.
T Consensus 322 ~~~~~~~~~~~~~~l~~aF~-~~D~dg--dG~Is~~E~~~-------------~~~~F~~~D---------~d~DG~Is~ 376 (391)
T PRK12309 322 RLARLEGGEAFTHAAQEIFR-LYDLDG--DGFITREEWLG-------------SDAVFDALD---------LNHDGKITP 376 (391)
T ss_pred HHHHhhccChhhHHHHHHHH-HhCCCC--CCcCcHHHHHH-------------HHHHHHHhC---------CCCCCCCcH
Confidence 34444466666778899997 577677 99999999952 467899999 999999999
Q ss_pred HHHHHHHHhcc
Q 002830 255 WQLETLLLQRD 265 (875)
Q Consensus 255 ~el~~ll~~~~ 265 (875)
+||...+..+.
T Consensus 377 eEf~~~~~~~~ 387 (391)
T PRK12309 377 EEMRAGLGAAL 387 (391)
T ss_pred HHHHHHHHHHH
Confidence 99999887654
No 156
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=95.01 E-value=0.068 Score=60.38 Aligned_cols=93 Identities=19% Similarity=0.305 Sum_probs=69.1
Q ss_pred HHHHHhccC--CCCCcCHHHHhhhh---------CC--------CCC--HHHHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 002830 158 VESRFESLA--EDGLLAREDFGECI---------GM--------VDT--KEFAVGIFDALARRRGQKIGKITKEELREFW 216 (875)
Q Consensus 158 v~~~F~~l~--~dG~L~~~eF~~~~---------g~--------~~~--~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~ 216 (875)
++=.|+-+| +||.|+++||.... |+ .++ .++-..|-.-||-.|+ +++++++||++|+
T Consensus 235 F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg--~~kLs~deF~~F~ 312 (489)
T KOG2643|consen 235 FRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRG--NGKLSIDEFLKFQ 312 (489)
T ss_pred ceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCC--CccccHHHHHHHH
Confidence 334566666 99999999998763 33 111 1222334444677788 9999999999999
Q ss_pred HhhcCCChhhhHHHHHhhhccccceEeeccCCCCccCHHHHHHHHHhcc
Q 002830 217 LQISDQSFDARLQIFFDIVDELGEFTSYYFPCKRVSHLWQLETLLLQRD 265 (875)
Q Consensus 217 ~~~~~~s~d~kL~~~F~myD~v~eii~l~a~~nG~I~~~el~~ll~~~~ 265 (875)
..+ .+|-++.=|.-+| ...+|.|+..+|-.+|....
T Consensus 313 e~L----q~Eil~lEF~~~~---------~~~~g~Ise~DFA~~lL~~a 348 (489)
T KOG2643|consen 313 ENL----QEEILELEFERFD---------KGDSGAISEVDFAELLLAYA 348 (489)
T ss_pred HHH----HHHHHHHHHHHhC---------cccccccCHHHHHHHHHHHc
Confidence 877 4567788899999 88789999999999887654
No 157
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=94.82 E-value=0.027 Score=38.51 Aligned_cols=25 Identities=16% Similarity=0.133 Sum_probs=22.5
Q ss_pred HHHHHhhhccccceEeeccCCCCccCHHHHHHHH
Q 002830 228 LQIFFDIVDELGEFTSYYFPCKRVSHLWQLETLL 261 (875)
Q Consensus 228 L~~~F~myD~v~eii~l~a~~nG~I~~~el~~ll 261 (875)
|+.+|+.+| .|.||.|+.+||.+++
T Consensus 1 l~~~F~~~D---------~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFD---------TDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHT---------TTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHc---------CCCCCcCCHHHHHHHC
Confidence 567899999 9999999999999864
No 158
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=93.50 E-value=0.24 Score=55.76 Aligned_cols=110 Identities=19% Similarity=0.207 Sum_probs=82.2
Q ss_pred hcccccccccCCCcchHHHHHHHHHHHhccC--CCCCcCHHHHhhhhCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHH
Q 002830 136 LNGLRFISKTAGASDAEELWRLVESRFESLA--EDGLLAREDFGECIGMVDTKEFAVGIFDALARRRGQKIGKITKEELR 213 (875)
Q Consensus 136 ~~~l~~i~~~~~~~~~~~~w~~v~~~F~~l~--~dG~L~~~eF~~~~g~~~~~~f~~~lF~al~~~~~~~~g~I~f~Ef~ 213 (875)
-+||-.+...... .+| ....|...| .||.++-+||...+.-++ .-+-++|.++|. ++ ||.|+-+|..
T Consensus 37 ~k~~~~l~~~~~~----~~~--~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E--~~l~~~F~~iD~-~h--dG~i~~~Ei~ 105 (463)
T KOG0036|consen 37 EKGLEKLDHPKPN----YEA--AKMLFSAMDANRDGRVDYSEFKRYLDNKE--LELYRIFQSIDL-EH--DGKIDPNEIW 105 (463)
T ss_pred HHHHHhcCCCCCc----hHH--HHHHHHhcccCcCCcccHHHHHHHHHHhH--HHHHHHHhhhcc-cc--CCccCHHHHH
Confidence 3566666655222 234 345566676 899999999999886543 346688888666 44 9999999999
Q ss_pred HHHHhhcCCChhhhHHHHHhhhccccceEeeccCCCCccCHHHHHHHHHhcc
Q 002830 214 EFWLQISDQSFDARLQIFFDIVDELGEFTSYYFPCKRVSHLWQLETLLLQRD 265 (875)
Q Consensus 214 ~~~~~~~~~s~d~kL~~~F~myD~v~eii~l~a~~nG~I~~~el~~ll~~~~ 265 (875)
..+..+-.+=.++|++-+|+-.| .++++.|+++|+..-+.-.|
T Consensus 106 ~~l~~~gi~l~de~~~k~~e~~d---------~~g~~~I~~~e~rd~~ll~p 148 (463)
T KOG0036|consen 106 RYLKDLGIQLSDEKAAKFFEHMD---------KDGKATIDLEEWRDHLLLYP 148 (463)
T ss_pred HHHHHhCCccCHHHHHHHHHHhc---------cCCCeeeccHHHHhhhhcCC
Confidence 99987766556788888999999 99999999999988665443
No 159
>PF14658 EF-hand_9: EF-hand domain
Probab=92.92 E-value=0.19 Score=42.70 Aligned_cols=61 Identities=13% Similarity=0.217 Sum_probs=49.9
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHhhcC-CChhhhHHHHHhhhccccceEeeccCCC-CccCHHHHHHHHHh
Q 002830 191 GIFDALARRRGQKIGKITKEELREFWLQISD-QSFDARLQIFFDIVDELGEFTSYYFPCK-RVSHLWQLETLLLQ 263 (875)
Q Consensus 191 ~lF~al~~~~~~~~g~I~f~Ef~~~~~~~~~-~s~d~kL~~~F~myD~v~eii~l~a~~n-G~I~~~el~~ll~~ 263 (875)
..|++ +|.++ .|.|.-.+++..|..+.. ...|++|+.+-+++| .++. |.|+++.|..+|++
T Consensus 2 ~~F~~-fD~~~--tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elD---------P~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDA-FDTQK--TGRVPVSDLITYLRAVTGRSPEESELQDLINELD---------PEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhh-cCCcC--CceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhC---------CCCCCceEeHHHHHHHHHH
Confidence 36774 55565 899999999999988776 667889999999999 8877 99999999988864
No 160
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=92.52 E-value=0.1 Score=61.58 Aligned_cols=93 Identities=14% Similarity=0.128 Sum_probs=63.9
Q ss_pred cccccccCCCcchHHHHHHHHHHHhccC-------CCCCcCHHHHhhh---------h-CC---CCCHHHHHHHHHHHHh
Q 002830 139 LRFISKTAGASDAEELWRLVESRFESLA-------EDGLLAREDFGEC---------I-GM---VDTKEFAVGIFDALAR 198 (875)
Q Consensus 139 l~~i~~~~~~~~~~~~w~~v~~~F~~l~-------~dG~L~~~eF~~~---------~-g~---~~~~~f~~~lF~al~~ 198 (875)
||=+-+++.... +.-..|+..|++-- +.-..+.+-|.++ + ++ ..+..|++++|+. .|
T Consensus 489 lrs~~~~~~lt~--~dL~~lYd~f~~e~~~~~~~~~~~~p~~~~~eqyi~~~~f~~~f~~l~pw~~s~~~~~rlF~l-~D 565 (671)
T KOG4347|consen 489 LRSVVQTTSLTN--TDLENLYDLFKEEHLTNSIGLGRSDPDFEAFEQYIDYAQFLEVFRELLPWAVSLIFLERLFRL-LD 565 (671)
T ss_pred HHhhcccCccCH--HHHHHHHHHHHHHHhccCcccCCCCCCchHHHHHHHHhhHHHHhhccCchhHHHHHHHHHHHh-cc
Confidence 444555555432 45678888888642 1112222222222 2 11 1456799999985 54
Q ss_pred hCCCCCCcccHHHHHHHHHhhcCCChhhhHHHHHhhhc
Q 002830 199 RRGQKIGKITKEELREFWLQISDQSFDARLQIFFDIVD 236 (875)
Q Consensus 199 ~~~~~~g~I~f~Ef~~~~~~~~~~s~d~kL~~~F~myD 236 (875)
..+ +|.|+|++|+.+++.+..++.-+|++.+|++||
T Consensus 566 ~s~--~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~ 601 (671)
T KOG4347|consen 566 DSM--TGLLTFKDLVSGLSILKAGDALEKLKLLYKLHD 601 (671)
T ss_pred cCC--cceeEHHHHHHHHHHHHhhhHHHHHHHHHhhcc
Confidence 455 999999999999999999999999999999999
No 161
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=92.51 E-value=0.24 Score=50.65 Aligned_cols=95 Identities=17% Similarity=0.152 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhccC--CCCCcCHHHHhhhh---CCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCC--hh
Q 002830 153 ELWRLVESRFESLA--EDGLLAREDFGECI---GMVDTKEFAVGIFDALARRRGQKIGKITKEELREFWLQISDQS--FD 225 (875)
Q Consensus 153 ~~w~~v~~~F~~l~--~dG~L~~~eF~~~~---g~~~~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~~~~s--~d 225 (875)
.+++..++.|+++| .||.|+..|++.++ |+.....=++.|...++. |. ||.|+|.||+-.......+- .|
T Consensus 96 kqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVde-d~--dgklSfreflLIfrkaaagEL~~d 172 (244)
T KOG0041|consen 96 KQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDE-DF--DGKLSFREFLLIFRKAAAGELQED 172 (244)
T ss_pred HHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhc-cc--ccchhHHHHHHHHHHHhccccccc
Confidence 57889999999999 89999999999984 777655566788876544 65 99999999976554322222 24
Q ss_pred hhHHHHHhh--hccccceEeeccCCCCccCHHHHHH
Q 002830 226 ARLQIFFDI--VDELGEFTSYYFPCKRVSHLWQLET 259 (875)
Q Consensus 226 ~kL~~~F~m--yD~v~eii~l~a~~nG~I~~~el~~ 259 (875)
+-+..+=++ +| .+..|.-.-.+|-.
T Consensus 173 s~~~~LAr~~eVD---------VskeGV~GAknFFe 199 (244)
T KOG0041|consen 173 SGLLRLARLSEVD---------VSKEGVSGAKNFFE 199 (244)
T ss_pred hHHHHHHHhcccc---------hhhhhhhhHHHHHH
Confidence 444444445 56 55556655555443
No 162
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.30 E-value=0.27 Score=53.92 Aligned_cols=97 Identities=16% Similarity=0.061 Sum_probs=64.3
Q ss_pred HHHHHHHhccC--CCCCcCHHHHhhhhCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhh-------cC---CC
Q 002830 156 RLVESRFESLA--EDGLLAREDFGECIGMVDTKEFAVGIFDALARRRGQKIGKITKEELREFWLQI-------SD---QS 223 (875)
Q Consensus 156 ~~v~~~F~~l~--~dG~L~~~eF~~~~g~~~~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~-------~~---~s 223 (875)
.++.+.|.++| .||.++.+|++.-+-....+....+.-+.+...+.++||.|+|+|+.....-. .+ ..
T Consensus 77 ~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~~~ 156 (325)
T KOG4223|consen 77 ERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEEDNE 156 (325)
T ss_pred HHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccchhcH
Confidence 68888899988 89999999999987443222223333333333344459999999998766532 11 11
Q ss_pred hhh----hHHHHHhhhccccceEeeccCCCCccCHHHHHHHH
Q 002830 224 FDA----RLQIFFDIVDELGEFTSYYFPCKRVSHLWQLETLL 261 (875)
Q Consensus 224 ~d~----kL~~~F~myD~v~eii~l~a~~nG~I~~~el~~ll 261 (875)
... +=+.-|++-| .|+||.+|++||...|
T Consensus 157 ~~~km~~rDe~rFk~AD---------~d~dg~lt~EEF~aFL 189 (325)
T KOG4223|consen 157 EYKKMIARDEERFKAAD---------QDGDGSLTLEEFTAFL 189 (325)
T ss_pred HHHHHHHHHHHHHhhcc---------cCCCCcccHHHHHhcc
Confidence 111 2245788989 8888888888887655
No 163
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=92.21 E-value=0.21 Score=57.31 Aligned_cols=51 Identities=29% Similarity=0.365 Sum_probs=42.2
Q ss_pred HHHHHHHhccC--CCCCcCHHHHhhhhCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhh
Q 002830 156 RLVESRFESLA--EDGLLAREDFGECIGMVDTKEFAVGIFDALARRRGQKIGKITKEELREFWLQI 219 (875)
Q Consensus 156 ~~v~~~F~~l~--~dG~L~~~eF~~~~g~~~~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~ 219 (875)
..++..|+.+| +||.|+++||.. ++.+|+. +|.|+ ||.|+++||..++...
T Consensus 334 ~~l~~aF~~~D~dgdG~Is~~E~~~----------~~~~F~~-~D~d~--DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 334 HAAQEIFRLYDLDGDGFITREEWLG----------SDAVFDA-LDLNH--DGKITPEEMRAGLGAA 386 (391)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHH----------HHHHHHH-hCCCC--CCCCcHHHHHHHHHHH
Confidence 47888888888 999999999942 5789975 55577 9999999999988754
No 164
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=91.73 E-value=0.32 Score=39.17 Aligned_cols=46 Identities=17% Similarity=0.441 Sum_probs=32.5
Q ss_pred cCHHHHhhhh---CCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhh
Q 002830 171 LAREDFGECI---GMVDTKEFAVGIFDALARRRGQKIGKITKEELREFWLQI 219 (875)
Q Consensus 171 L~~~eF~~~~---g~~~~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~ 219 (875)
++-.|.+..+ ++.-++.+|..||.. .|+.+ +|.++.+||.+|...+
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~-~D~s~--~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQE-CDKSQ--SGRLEGEEFEEFYKRL 50 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHH-H-SSS--SSEBEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHH-hcccC--CCCccHHHHHHHHHHh
Confidence 4556666664 566678999999986 55565 9999999999998765
No 165
>PLN02964 phosphatidylserine decarboxylase
Probab=91.25 E-value=0.37 Score=58.38 Aligned_cols=59 Identities=25% Similarity=0.333 Sum_probs=45.5
Q ss_pred HHHHHhccC--CCCCcCHHHHhhhh---CCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhh
Q 002830 158 VESRFESLA--EDGLLAREDFGECI---GMVDTKEFAVGIFDALARRRGQKIGKITKEELREFWLQI 219 (875)
Q Consensus 158 v~~~F~~l~--~dG~L~~~eF~~~~---g~~~~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~ 219 (875)
+++-|+.+| +||.|+.+||.+++ +...+++-+.++|+. +|.|+ +|.|+++||...+...
T Consensus 181 i~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~-fDkDg--dG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 181 ARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKA-ADLNG--DGVVTIDELAALLALQ 244 (644)
T ss_pred HHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHH-hCCCC--CCcCCHHHHHHHHHhc
Confidence 444455555 89999999999875 444567779999985 66677 9999999999987653
No 166
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=90.47 E-value=0.63 Score=37.55 Aligned_cols=48 Identities=10% Similarity=0.058 Sum_probs=38.0
Q ss_pred ccHHHHHHHHHhhcCCChhhhHHHHHhhhccccceEeeccCCCCccCHHHHHHHHHh
Q 002830 207 ITKEELREFWLQISDQSFDARLQIFFDIVDELGEFTSYYFPCKRVSHLWQLETLLLQ 263 (875)
Q Consensus 207 I~f~Ef~~~~~~~~~~s~d~kL~~~F~myD~v~eii~l~a~~nG~I~~~el~~ll~~ 263 (875)
++|+|...++.++.=.=.++-...+|+.|| .+.+|.++.+|++...+.
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D---------~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECD---------KSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH----------SSSSSEBEHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhc---------ccCCCCccHHHHHHHHHH
Confidence 689999999988775555677888999999 999999999999987654
No 167
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=89.67 E-value=0.43 Score=32.60 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=16.9
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHH
Q 002830 190 VGIFDALARRRGQKIGKITKEELREF 215 (875)
Q Consensus 190 ~~lF~al~~~~~~~~g~I~f~Ef~~~ 215 (875)
+..|+. .|.|+ ||.||++||..+
T Consensus 2 ~~~F~~-~D~d~--DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQ-FDTDG--DGKISFEEFQRL 24 (25)
T ss_dssp HHHHHH-HTTTS--SSEEEHHHHHHH
T ss_pred HHHHHH-HcCCC--CCcCCHHHHHHH
Confidence 467774 55566 899999998875
No 168
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=89.51 E-value=0.4 Score=31.77 Aligned_cols=27 Identities=19% Similarity=0.169 Sum_probs=23.9
Q ss_pred HHHHHhhhccccceEeeccCCCCccCHHHHHHHHHh
Q 002830 228 LQIFFDIVDELGEFTSYYFPCKRVSHLWQLETLLLQ 263 (875)
Q Consensus 228 L~~~F~myD~v~eii~l~a~~nG~I~~~el~~ll~~ 263 (875)
++.+|+.+| .+.+|+|+.+||..++..
T Consensus 2 ~~~~f~~~d---------~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFD---------KDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHC---------CCCCCcEeHHHHHHHHHh
Confidence 677999999 999999999999998764
No 169
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=88.08 E-value=0.64 Score=33.13 Aligned_cols=26 Identities=31% Similarity=0.291 Sum_probs=20.2
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 002830 189 AVGIFDALARRRGQKIGKITKEELREFWL 217 (875)
Q Consensus 189 ~~~lF~al~~~~~~~~g~I~f~Ef~~~~~ 217 (875)
..++|+. .|+++ +|.|+++||..++.
T Consensus 2 l~~~F~~-~D~d~--dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 2 LREAFKM-FDKDG--DGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHH-H-TTS--SSEEEHHHHHHHHH
T ss_pred HHHHHHH-HCCCC--CCcCcHHHHHHHHH
Confidence 4678885 55576 99999999999886
No 170
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=87.83 E-value=0.35 Score=45.82 Aligned_cols=53 Identities=25% Similarity=0.370 Sum_probs=21.7
Q ss_pred HHHHHHhccC--CCCCcCHHHHhhhhC-CCCCHHHHHHHHHHHHhhCCCCCCcccHHHH
Q 002830 157 LVESRFESLA--EDGLLAREDFGECIG-MVDTKEFAVGIFDALARRRGQKIGKITKEEL 212 (875)
Q Consensus 157 ~v~~~F~~l~--~dG~L~~~eF~~~~g-~~~~~~f~~~lF~al~~~~~~~~g~I~f~Ef 212 (875)
.|.-.|.+|| .||.|++.|+..+.. +.+.+.=+...|+. -|.|+ ||.||+.|+
T Consensus 55 ~~~W~F~~LD~n~d~~L~~~El~~l~~~l~~~e~C~~~F~~~-CD~n~--d~~Is~~EW 110 (113)
T PF10591_consen 55 VVHWKFCQLDRNKDGVLDRSELKPLRRPLMPPEHCARPFFRS-CDVNK--DGKISLDEW 110 (113)
T ss_dssp HHHHHHHHH--T-SSEE-TTTTGGGGSTTSTTGGGHHHHHHH-H-TT---SSSEEHHHH
T ss_pred hhhhhHhhhcCCCCCccCHHHHHHHHHHHhhhHHHHHHHHHH-cCCCC--CCCCCHHHH
Confidence 3444455555 555555555555543 22233333344432 22233 555555554
No 171
>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins. This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=87.27 E-value=2.7 Score=39.96 Aligned_cols=92 Identities=18% Similarity=0.247 Sum_probs=49.9
Q ss_pred EEEEEEeeCCCEEEEEEecCCC--cc-cCCCcEEEEECCCCCCc---------------------ccccceeecC-CCCC
Q 002830 553 KDLKVSVLPGNVLSIVMSKPNG--FR-YRSGQYIFLQCPTISSF---------------------EWHPFSITSA-PGDD 607 (875)
Q Consensus 553 ~i~~v~~l~~~vl~L~~~~p~~--~~-ykpGQyvfL~~p~is~~---------------------e~HPFTItSa-P~dd 607 (875)
+|+.++.++.+..+|++.-+.- +. ..+|||+.|.+|....- ..+.|||-+. |+..
T Consensus 1 ~V~~~~~ltP~~~Rv~l~g~~l~~~~~~~~d~~ikL~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~R~YTvR~~d~~~~ 80 (117)
T PF08021_consen 1 TVVRVERLTPHMRRVTLGGEDLAGFPSWGPDQHIKLFFPPPGGDPPLPPPLDEGGYRWPPDEQRPVMRTYTVRRFDPETG 80 (117)
T ss_dssp EEEEEEEEETTEEEEEEESGGGTT--S--TT-EEEEEE--TTS----------------------EEEEEE--EEETT--
T ss_pred CEEEEEECCCCEEEEEEECCCcccCccCCCCcEEEEEeCCCCCCccccccccccccccccccCCCCCCCcCEeeEcCCCC
Confidence 4678889999999999998763 32 46999999999864321 3577899776 5567
Q ss_pred eEEEEEEecCCCcHHHHHHhhhcccccccCCccccccCCCCCCCCCEEEEECcCCCC
Q 002830 608 HLSVHIRIVGDWTHELKQVFTEDKDSTYAIGRAEFGQGGTNRRIQPRLLVDGPYGAA 664 (875)
Q Consensus 608 ~lsl~IR~~G~wT~~L~~~~~~~~~~~~~~G~s~~l~~~~~~~~~~~v~IdGPYG~~ 664 (875)
.|.|-+-..|+- .--...+..+ .+| ..|.|-||=|++
T Consensus 81 ~l~iDfv~Hg~~-Gpas~WA~~A-----~pG--------------d~v~v~gP~g~~ 117 (117)
T PF08021_consen 81 ELDIDFVLHGDE-GPASRWARSA-----RPG--------------DRVGVTGPRGSF 117 (117)
T ss_dssp EEEEEEE--SS---HHHHHHHH-------TT---------------EEEEEEEE---
T ss_pred EEEEEEEECCCC-CchHHHHhhC-----CCC--------------CEEEEeCCCCCC
Confidence 888777666651 0001111111 344 899999997763
No 172
>PF14658 EF-hand_9: EF-hand domain
Probab=86.97 E-value=0.94 Score=38.63 Aligned_cols=57 Identities=11% Similarity=0.207 Sum_probs=44.7
Q ss_pred HHHhccC--CCCCcCHHHHhhhh---CC-CCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHh
Q 002830 160 SRFESLA--EDGLLAREDFGECI---GM-VDTKEFAVGIFDALARRRGQKIGKITKEELREFWLQ 218 (875)
Q Consensus 160 ~~F~~l~--~dG~L~~~eF~~~~---g~-~~~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~ 218 (875)
..|+.+| +.|.+.-.++..++ +. .+++.-++.+.+.+|- ++ ++|.|+|+.|...|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP-~g-~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDP-EG-RDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCC-CC-CCceEeHHHHHHHHHH
Confidence 3588888 89999999999986 44 5666678889986555 44 1699999999988764
No 173
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=86.06 E-value=1.2 Score=50.54 Aligned_cols=60 Identities=15% Similarity=0.220 Sum_probs=45.4
Q ss_pred HHHHHHhccC--CCCCcCHHHHhhhh-------CCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhh
Q 002830 157 LVESRFESLA--EDGLLAREDFGECI-------GMVDTKEFAVGIFDALARRRGQKIGKITKEELREFWLQI 219 (875)
Q Consensus 157 ~v~~~F~~l~--~dG~L~~~eF~~~~-------g~~~~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~ 219 (875)
.||..|.-.| .+|.|+.+||.... ...-++....++-+.+|- ++ ||.||+.||+++....
T Consensus 548 ~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~-Nk--DG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 548 SLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDL-NK--DGKIDLNEFLEAFRLV 616 (631)
T ss_pred hHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhcc-CC--CCcccHHHHHHHHhhh
Confidence 5777888887 89999999998873 223455667777775443 55 9999999999987554
No 174
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=85.76 E-value=2.4 Score=54.53 Aligned_cols=95 Identities=20% Similarity=0.297 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHhccC--CCCCcCHHHHhhhh---C----CC---CCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHh-
Q 002830 152 EELWRLVESRFESLA--EDGLLAREDFGECI---G----MV---DTKEFAVGIFDALARRRGQKIGKITKEELREFWLQ- 218 (875)
Q Consensus 152 ~~~w~~v~~~F~~l~--~dG~L~~~eF~~~~---g----~~---~~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~- 218 (875)
|+.-.+..--|+.+| .+|.|+-.+|..|+ | |. .+++-.+++.+.+|-.+ +|.|++.||+.||-.
T Consensus 2249 Ee~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r---~G~Vsl~dY~afmi~~ 2325 (2399)
T KOG0040|consen 2249 EEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNR---DGYVSLQDYMAFMISK 2325 (2399)
T ss_pred HHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCC---cCcccHHHHHHHHHhc
Confidence 367789999999999 89999999999996 2 22 23345778888655533 999999999999843
Q ss_pred -hcCCChhhhHHHHHhhhccccceEeeccCCCCccCHHHHHH
Q 002830 219 -ISDQSFDARLQIFFDIVDELGEFTSYYFPCKRVSHLWQLET 259 (875)
Q Consensus 219 -~~~~s~d~kL~~~F~myD~v~eii~l~a~~nG~I~~~el~~ 259 (875)
..+--.++.+.-+|+-.| + +--|++.+++..
T Consensus 2326 ETeNI~s~~eIE~AfraL~---------a-~~~yvtke~~~~ 2357 (2399)
T KOG0040|consen 2326 ETENILSSEEIEDAFRALD---------A-GKPYVTKEELYQ 2357 (2399)
T ss_pred ccccccchHHHHHHHHHhh---------c-CCccccHHHHHh
Confidence 222222348899999999 7 567888888754
No 175
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=85.12 E-value=2.3 Score=41.60 Aligned_cols=100 Identities=15% Similarity=0.182 Sum_probs=65.6
Q ss_pred HHHHHHhccCCCCCcCHHHHhhhh----CCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCCh-hhhHHHH
Q 002830 157 LVESRFESLAEDGLLAREDFGECI----GMVDTKEFAVGIFDALARRRGQKIGKITKEELREFWLQISDQSF-DARLQIF 231 (875)
Q Consensus 157 ~v~~~F~~l~~dG~L~~~eF~~~~----g~~~~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~~~~s~-d~kL~~~ 231 (875)
++-+.|. -|++|.|+-++|-.++ .|.+-..-+...|. +.|-|+ |+.|-..++...+..++++.. ++....
T Consensus 75 ri~e~FS-eDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFk-IYDfd~--D~~i~~~DL~~~l~~lTr~eLs~eEv~~- 149 (189)
T KOG0038|consen 75 RICEVFS-EDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFK-IYDFDG--DEFIGHDDLEKTLTSLTRDELSDEEVEL- 149 (189)
T ss_pred HHHHHhc-cCCCCcccHHHHHHHHHHHHhhChHHhhhhheeE-EeecCC--CCcccHHHHHHHHHHHhhccCCHHHHHH-
Confidence 5556666 4599999999999986 34333333444453 345465 899999999988877776433 233332
Q ss_pred HhhhccccceE-eeccCCCCccCHHHHHHHHHhccc
Q 002830 232 FDIVDELGEFT-SYYFPCKRVSHLWQLETLLLQRDT 266 (875)
Q Consensus 232 F~myD~v~eii-~l~a~~nG~I~~~el~~ll~~~~~ 266 (875)
+||| +| .-..|+||.|++.||+.++...+.
T Consensus 150 --i~ek---vieEAD~DgDgkl~~~eFe~~i~raPD 180 (189)
T KOG0038|consen 150 --ICEK---VIEEADLDGDGKLSFAEFEHVILRAPD 180 (189)
T ss_pred --HHHH---HHHHhcCCCCCcccHHHHHHHHHhCcc
Confidence 2332 11 122678899999999999877653
No 176
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=83.97 E-value=4.7 Score=36.74 Aligned_cols=63 Identities=11% Similarity=0.133 Sum_probs=47.1
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHh-----hcCCChhhhHHHHHhhhccccceEeeccCCCCccCHHHHHHHHHh
Q 002830 189 AVGIFDALARRRGQKIGKITKEELREFWLQ-----ISDQSFDARLQIFFDIVDELGEFTSYYFPCKRVSHLWQLETLLLQ 263 (875)
Q Consensus 189 ~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~-----~~~~s~d~kL~~~F~myD~v~eii~l~a~~nG~I~~~el~~ll~~ 263 (875)
+-.+|.... | +.+++++.||.+.+.. +..+...+-+..+|+.-| .|.||.|++.|+..++-.
T Consensus 10 lI~~FhkYa---G-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD---------~n~Dg~vdF~EF~~Lv~~ 76 (91)
T cd05024 10 MMLTFHKFA---G-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLD---------DCRDGKVGFQSFFSLIAG 76 (91)
T ss_pred HHHHHHHHc---C-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhC---------CCCCCcCcHHHHHHHHHH
Confidence 345665544 2 1579999999998843 334444457888998899 999999999999999866
Q ss_pred c
Q 002830 264 R 264 (875)
Q Consensus 264 ~ 264 (875)
+
T Consensus 77 l 77 (91)
T cd05024 77 L 77 (91)
T ss_pred H
Confidence 4
No 177
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=83.91 E-value=2.2 Score=49.12 Aligned_cols=87 Identities=17% Similarity=0.255 Sum_probs=65.8
Q ss_pred HHHHHhccC--CCCCcCHHHHhhhhCC---------CCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCChhh
Q 002830 158 VESRFESLA--EDGLLAREDFGECIGM---------VDTKEFAVGIFDALARRRGQKIGKITKEELREFWLQISDQSFDA 226 (875)
Q Consensus 158 v~~~F~~l~--~dG~L~~~eF~~~~g~---------~~~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~~~~s~d~ 226 (875)
.+..|.-+| ++|.++-++|+++++. +-+.+|..+.|.. .+.+ .++|.||.+++..+. +|
T Consensus 110 ~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~-~~~r-----~~ny~~f~Q~lh~~~----~E 179 (694)
T KOG0751|consen 110 FEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGD-IRKR-----HLNYAEFTQFLHEFQ----LE 179 (694)
T ss_pred HHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhh-HHHH-----hccHHHHHHHHHHHH----HH
Confidence 456666666 8889999999999742 3566899998874 2222 589999999887653 34
Q ss_pred hHHHHHhhhccccceEeeccCCCCccCHHHHHHHHHh
Q 002830 227 RLQIFFDIVDELGEFTSYYFPCKRVSHLWQLETLLLQ 263 (875)
Q Consensus 227 kL~~~F~myD~v~eii~l~a~~nG~I~~~el~~ll~~ 263 (875)
--+.+|+.+| ..+||.|+.=++..++..
T Consensus 180 ~~~qafr~~d---------~~~ng~is~Ldfq~imvt 207 (694)
T KOG0751|consen 180 HAEQAFREKD---------KAKNGFISVLDFQDIMVT 207 (694)
T ss_pred HHHHHHHHhc---------ccCCCeeeeechHhhhhh
Confidence 5777999999 999999997777776543
No 178
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=83.10 E-value=3.2 Score=38.77 Aligned_cols=89 Identities=18% Similarity=0.233 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCChhhhHHHHHhhhccccceEeeccCCCCccCHHHHHHHHHhccc
Q 002830 187 EFAVGIFDALARRRGQKIGKITKEELREFWLQISDQSFDARLQIFFDIVDELGEFTSYYFPCKRVSHLWQLETLLLQRDT 266 (875)
Q Consensus 187 ~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~~~~s~d~kL~~~F~myD~v~eii~l~a~~nG~I~~~el~~ll~~~~~ 266 (875)
..-.++|+.++ .+ +|.|+-++-..++..- +=..+.|..++++.| .+.||+++.+||...+.-...
T Consensus 10 ~~y~~~F~~l~--~~--~g~isg~~a~~~f~~S--~L~~~~L~~IW~LaD---------~~~dG~L~~~EF~iAm~Li~~ 74 (104)
T PF12763_consen 10 QKYDQIFQSLD--PQ--DGKISGDQAREFFMKS--GLPRDVLAQIWNLAD---------IDNDGKLDFEEFAIAMHLINR 74 (104)
T ss_dssp HHHHHHHHCTS--SS--TTEEEHHHHHHHHHHT--TSSHHHHHHHHHHH----------SSSSSEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC--CC--CCeEeHHHHHHHHHHc--CCCHHHHHHHHhhhc---------CCCCCcCCHHHHHHHHHHHHH
Confidence 35567777543 23 7999999998876432 223578999999999 999999999999986654322
Q ss_pred c-CCCCCCcccccccccccccCCCCCCCCc
Q 002830 267 Y-MNYSRPLSTTSKTSNWSQNLSPFTPKGA 295 (875)
Q Consensus 267 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (875)
. .+....+ +..|...|.|+-.+.-
T Consensus 75 ~~~~~~~~l-----P~~LP~~L~p~s~~~~ 99 (104)
T PF12763_consen 75 KLNGNGKPL-----PSSLPPSLIPPSKRPL 99 (104)
T ss_dssp HHHHTTS--------SSSSGGGSSSCG---
T ss_pred HhcCCCCCC-----chhcCHHHCCCCcccc
Confidence 1 1111122 3556666666654443
No 179
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=81.82 E-value=1.6 Score=41.38 Aligned_cols=48 Identities=21% Similarity=0.221 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCChhhhHHHHHhhhcc
Q 002830 185 TKEFAVGIFDALARRRGQKIGKITKEELREFWLQISDQSFDARLQIFFDIVDE 237 (875)
Q Consensus 185 ~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~~~~s~d~kL~~~F~myD~ 237 (875)
.+..+.-.|..||. ++ ||.++.+|+..+...+ ...+.=++-||+.||.
T Consensus 52 ~~~~~~W~F~~LD~-n~--d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~ 99 (113)
T PF10591_consen 52 CKRVVHWKFCQLDR-NK--DGVLDRSELKPLRRPL--MPPEHCARPFFRSCDV 99 (113)
T ss_dssp GHHHHHHHHHHH---T---SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-T
T ss_pred hhhhhhhhHhhhcC-CC--CCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCC
Confidence 45578888887776 44 9999999998766555 2345557779999985
No 180
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=75.55 E-value=11 Score=37.63 Aligned_cols=86 Identities=19% Similarity=0.247 Sum_probs=65.6
Q ss_pred CCCCcCHHHHhhhhCC----CCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCChhhhHHHHHhhhccccceE
Q 002830 167 EDGLLAREDFGECIGM----VDTKEFAVGIFDALARRRGQKIGKITKEELREFWLQISDQSFDARLQIFFDIVDELGEFT 242 (875)
Q Consensus 167 ~dG~L~~~eF~~~~g~----~~~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~~~~s~d~kL~~~F~myD~v~eii 242 (875)
..|.|+-.-|-.++|- .++++-.-.-|.. +|.++ +|.|+-+.+.+.|..+.+.=.++....+|+-|=
T Consensus 77 a~gPINft~FLTmfGekL~gtdpe~~I~~AF~~-FD~~~--~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p------ 147 (171)
T KOG0031|consen 77 APGPINFTVFLTMFGEKLNGTDPEEVILNAFKT-FDDEG--SGKIDEDYLRELLTTMGDRFTDEEVDEMYREAP------ 147 (171)
T ss_pred CCCCeeHHHHHHHHHHHhcCCCHHHHHHHHHHh-cCccC--CCccCHHHHHHHHHHhcccCCHHHHHHHHHhCC------
Confidence 5677887777666642 3555666666764 44455 899999999999887776656778888888888
Q ss_pred eeccCCCCccCHHHHHHHHHhc
Q 002830 243 SYYFPCKRVSHLWQLETLLLQR 264 (875)
Q Consensus 243 ~l~a~~nG~I~~~el~~ll~~~ 264 (875)
.|.+|.|...+|..++...
T Consensus 148 ---~d~~G~~dy~~~~~~ithG 166 (171)
T KOG0031|consen 148 ---IDKKGNFDYKAFTYIITHG 166 (171)
T ss_pred ---cccCCceeHHHHHHHHHcc
Confidence 8889999999999998743
No 181
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=73.57 E-value=8.2 Score=33.94 Aligned_cols=61 Identities=20% Similarity=0.361 Sum_probs=45.9
Q ss_pred HHHHHHhccC-CCCCcCHHHHhhhh----CC-CCCHHHHHHHHHHHHhhC-CCCCCcccHHHHHHHHH
Q 002830 157 LVESRFESLA-EDGLLAREDFGECI----GM-VDTKEFAVGIFDALARRR-GQKIGKITKEELREFWL 217 (875)
Q Consensus 157 ~v~~~F~~l~-~dG~L~~~eF~~~~----g~-~~~~~f~~~lF~al~~~~-~~~~g~I~f~Ef~~~~~ 217 (875)
+|+..|.+++ +.+.|+.++|.+.+ +. ..+.+-+.++++.+.... ....+.+++++|..+|.
T Consensus 1 ei~~if~~ys~~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~ 68 (83)
T PF09279_consen 1 EIEEIFRKYSSDKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLF 68 (83)
T ss_dssp HHHHHHHHHCTTSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHH
T ss_pred CHHHHHHHHhCCCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHC
Confidence 4788899888 68899999999998 33 235778899998753321 11268999999999983
No 182
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=70.89 E-value=5.7 Score=25.85 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=18.4
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 002830 189 AVGIFDALARRRGQKIGKITKEELREFWL 217 (875)
Q Consensus 189 ~~~lF~al~~~~~~~~g~I~f~Ef~~~~~ 217 (875)
.+++|+. .+.++ +|.|+++||..++.
T Consensus 2 ~~~~f~~-~d~~~--~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRL-FDKDG--DGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHH-HCCCC--CCcEeHHHHHHHHH
Confidence 3567875 44455 88899999988765
No 183
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=69.20 E-value=8.4 Score=44.48 Aligned_cols=91 Identities=25% Similarity=0.301 Sum_probs=68.1
Q ss_pred HHHHHHhc----cC--CCCCcCHHHHhhhh---CCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHh-------hc
Q 002830 157 LVESRFES----LA--EDGLLAREDFGECI---GMVDTKEFAVGIFDALARRRGQKIGKITKEELREFWLQ-------IS 220 (875)
Q Consensus 157 ~v~~~F~~----l~--~dG~L~~~eF~~~~---g~~~~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~-------~~ 220 (875)
=|++.|.+ +. .+|+++-++|-..+ .-++++.-++..|+.||- ++ +|.++-.|+.-+.+. +.
T Consensus 312 ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDl-d~--~G~Lt~~el~~fyeeq~~rm~~~~ 388 (493)
T KOG2562|consen 312 IVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDL-DG--DGILTLNELRYFYEEQLQRMECMG 388 (493)
T ss_pred HHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeeeec-cC--CCcccHHHHHHHHHHHHHHHHhcC
Confidence 57888992 33 89999999998874 334566778999987665 66 999999987655421 11
Q ss_pred --CCChhhhHHHHHhhhccccceEeeccCCCCccCHHHHHH
Q 002830 221 --DQSFDARLQIFFDIVDELGEFTSYYFPCKRVSHLWQLET 259 (875)
Q Consensus 221 --~~s~d~kL~~~F~myD~v~eii~l~a~~nG~I~~~el~~ 259 (875)
.-.+++-+-.+|||.- ....|.||+.+|+.
T Consensus 389 ~e~l~fed~l~qi~DMvk---------P~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 389 QEALPFEDALCQIRDMVK---------PEDENKITLQDLKG 420 (493)
T ss_pred CCcccHHHHHHHHHHHhC---------ccCCCceeHHHHhh
Confidence 3556777778888887 67779999999986
No 184
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=68.79 E-value=13 Score=38.40 Aligned_cols=65 Identities=14% Similarity=0.084 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCChhhhHHHHHhhhccccceEeeccCCCCccCHHHHHHHHHhc
Q 002830 188 FAVGIFDALARRRGQKIGKITKEELREFWLQISDQSFDARLQIFFDIVDELGEFTSYYFPCKRVSHLWQLETLLLQR 264 (875)
Q Consensus 188 f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~~~~s~d~kL~~~F~myD~v~eii~l~a~~nG~I~~~el~~ll~~~ 264 (875)
.+..+|.. .|.+. ||.||+.|+.-+|..+--.-..--|+-.-+-+| .|-+|.|++-|+--+....
T Consensus 100 ~~~~~Fk~-yDe~r--DgfIdl~ELK~mmEKLgapQTHL~lK~mikeVd---------ed~dgklSfreflLIfrka 164 (244)
T KOG0041|consen 100 DAESMFKQ-YDEDR--DGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVD---------EDFDGKLSFREFLLIFRKA 164 (244)
T ss_pred HHHHHHHH-hcccc--cccccHHHHHHHHHHhCCchhhHHHHHHHHHhh---------cccccchhHHHHHHHHHHH
Confidence 35678874 55565 999999999999988765444556777888889 8889999999998877543
No 185
>PLN02631 ferric-chelate reductase
Probab=68.00 E-value=14 Score=45.78 Aligned_cols=56 Identities=23% Similarity=0.489 Sum_probs=46.1
Q ss_pred eeeecC-CCCHHHHHHHHHhhCCCCeEEEEEeCchHHHHHHHHHHHhhccCCCCeEEEEEecC
Q 002830 814 VRTHFA-RPNWKEVFSRVATKHPNATIGVFYCGMPVLAKELKKLSHELTHRTSTRFEFHKEYF 875 (875)
Q Consensus 814 v~~~~g-RPd~~~v~~~~~~~~~~~~v~Vf~CGPp~l~~~lr~~~~~~~~~~~~~f~fhkE~F 875 (875)
..+|+| |||+++++.+ ...+++|||.+|||++|-.+|.+.|...+ .+.++||.-+|
T Consensus 641 ~~~~~g~rp~~~~i~~~---~~~~~~vgvlv~gp~~~~~~va~~c~s~~---~~~~~f~s~sf 697 (699)
T PLN02631 641 TSVHFGSKPNLKKILLE---AEGSEDVGVMVCGPRKMRHEVAKICSSGL---AKNLHFEAISF 697 (699)
T ss_pred eeeeecCCCCHHHHHHh---ccCCCceeEEEECcHHHHHHHHHHHhcCC---CcceeEEeecc
Confidence 347887 9999999983 22345899999999999999999999865 56788887776
No 186
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.11 E-value=18 Score=34.28 Aligned_cols=51 Identities=18% Similarity=0.150 Sum_probs=36.5
Q ss_pred cCCCCCcCHHHHhhhh---------CCC----CCHHHHHHHHHHHHhh-CCCCCCcccHHHHHHH
Q 002830 165 LAEDGLLAREDFGECI---------GMV----DTKEFAVGIFDALARR-RGQKIGKITKEELREF 215 (875)
Q Consensus 165 l~~dG~L~~~eF~~~~---------g~~----~~~~f~~~lF~al~~~-~~~~~g~I~f~Ef~~~ 215 (875)
+|+||.|+--|+...| |.. .++.-+++|.+++-+. |-++||.||+.||+..
T Consensus 78 ldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 78 LDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred cCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 3489999988887775 221 3556788888876443 3445899999999864
No 187
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=64.79 E-value=6.7 Score=48.22 Aligned_cols=48 Identities=17% Similarity=0.104 Sum_probs=39.9
Q ss_pred HHHHHHhhhh-hhhhhccccccccccccchhhHHHHHHHHHHHHHHHHHHhhhcc
Q 002830 363 ALILLPVCRN-TLTWLRSTRARYFVPFDDNINFHKTIACAIIIGVVLHVGNHLAC 416 (875)
Q Consensus 363 ~lill~v~Rn-~lt~Lr~~~l~~~vp~d~~~~fHk~ia~~i~v~~~iH~i~h~~~ 416 (875)
+++.+|.-|| .+.++.+ +.+...+.+|+|.+++++...++|++..+.+
T Consensus 207 l~~~~p~~~n~~fh~l~g------~~~~~~~~~H~w~~~~~~~~~~ih~~~~~~~ 255 (646)
T KOG0039|consen 207 LFSYLPFDRNLNFHKLVA------LTIAVFILLHIWLHLVNFFPFLVHGLEYTIS 255 (646)
T ss_pred hheEeeccccchHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3345888897 6777776 6788899999999999999999999988753
No 188
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=60.46 E-value=6.6 Score=41.55 Aligned_cols=63 Identities=17% Similarity=0.219 Sum_probs=43.8
Q ss_pred HHHHHHHhccC--CCCCcCHHHHhhhhCCC------CCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcC
Q 002830 156 RLVESRFESLA--EDGLLAREDFGECIGMV------DTKEFAVGIFDALARRRGQKIGKITKEELREFWLQISD 221 (875)
Q Consensus 156 ~~v~~~F~~l~--~dG~L~~~eF~~~~g~~------~~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~~~ 221 (875)
.++...|.+.| .||+|+-.|.++-|--+ .+.+-.+--|+++ |.|+ ||.|+.+||..-......
T Consensus 101 rklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraV-Dpdg--DGhvsWdEykvkFlaskg 171 (362)
T KOG4251|consen 101 RKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAV-DPDG--DGHVSWDEYKVKFLASKG 171 (362)
T ss_pred HHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeee-CCCC--CCceehhhhhhHHHhhcC
Confidence 47888999999 89999999999876111 1222334467764 4466 999999999654443333
No 189
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=58.23 E-value=18 Score=35.51 Aligned_cols=57 Identities=14% Similarity=0.151 Sum_probs=39.7
Q ss_pred HHHHHHHHHhccCCCCCcCHHHHhhhh---CCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHH
Q 002830 154 LWRLVESRFESLAEDGLLAREDFGECI---GMVDTKEFAVGIFDALARRRGQKIGKITKEELREF 215 (875)
Q Consensus 154 ~w~~v~~~F~~l~~dG~L~~~eF~~~~---g~~~~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~ 215 (875)
+.-+.-+.|++ +++|.|.-.|+..++ |-+-+++-+++|.. -..| .+|.|++++|+.-
T Consensus 89 dfvegLrvFDk-eg~G~i~~aeLRhvLttlGekl~eeEVe~Lla--g~eD--~nG~i~YE~fVk~ 148 (152)
T KOG0030|consen 89 DFVEGLRVFDK-EGNGTIMGAELRHVLTTLGEKLTEEEVEELLA--GQED--SNGCINYEAFVKH 148 (152)
T ss_pred HHHHHHHhhcc-cCCcceeHHHHHHHHHHHHhhccHHHHHHHHc--cccc--cCCcCcHHHHHHH
Confidence 44444455553 289999999999995 65556666777764 2223 3899999999864
No 190
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=57.77 E-value=46 Score=30.32 Aligned_cols=82 Identities=11% Similarity=0.022 Sum_probs=53.7
Q ss_pred CCCCcCHHHHhhhh----C-CCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCChhhhHHHHHhhhccccce
Q 002830 167 EDGLLAREDFGECI----G-MVDTKEFAVGIFDALARRRGQKIGKITKEELREFWLQISDQSFDARLQIFFDIVDELGEF 241 (875)
Q Consensus 167 ~dG~L~~~eF~~~~----g-~~~~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~~~~s~d~kL~~~F~myD~v~ei 241 (875)
.||.++.+|-..+- . ++.+.+..+++++. +.... ....++.+|..-+.... +.+.|..++-.++.
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~-~~~~~--~~~~~~~~~~~~~~~~~--~~~~r~~~l~~L~~----- 81 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAE-AEALE--EEAPDLYEFTSLIKEHF--DYEERLELVEALWE----- 81 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHH-HHHHH--HhCCCHHHHHHHHHHhC--CHHHHHHHHHHHHH-----
Confidence 68999999887763 1 23355677888875 44333 56788999987765433 45666555444444
Q ss_pred EeeccCCCCccCHHHHHHHH
Q 002830 242 TSYYFPCKRVSHLWQLETLL 261 (875)
Q Consensus 242 i~l~a~~nG~I~~~el~~ll 261 (875)
.+-+||.++..|-..+-
T Consensus 82 ---vA~ADG~~~~~E~~~l~ 98 (104)
T cd07313 82 ---VAYADGELDEYEEHLIR 98 (104)
T ss_pred ---HHHhcCCCCHHHHHHHH
Confidence 24578999998877654
No 191
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=57.58 E-value=33 Score=43.16 Aligned_cols=94 Identities=13% Similarity=0.112 Sum_probs=67.2
Q ss_pred HHHHHHHhccC--CCCCcCHHHHhhhh---CCCC--CHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHh-hcCCChhhh
Q 002830 156 RLVESRFESLA--EDGLLAREDFGECI---GMVD--TKEFAVGIFDALARRRGQKIGKITKEELREFWLQ-ISDQSFDAR 227 (875)
Q Consensus 156 ~~v~~~F~~l~--~dG~L~~~eF~~~~---g~~~--~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~-~~~~s~d~k 227 (875)
.++..-|...+ ..|.++.++|..|+ |.+. ......+.|..+...|-+.-|.++|.||.+++.- ..+.+.+++
T Consensus 747 ~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~l~~~~r 826 (890)
T KOG0035|consen 747 DELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYEDLDTELR 826 (890)
T ss_pred HHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhhhcHHHH
Confidence 45555555555 56789999999995 3332 2334567777555545433488999999999965 778888999
Q ss_pred HHHHHhhhccccceEeeccCCCCccCHHHHHH
Q 002830 228 LQIFFDIVDELGEFTSYYFPCKRVSHLWQLET 259 (875)
Q Consensus 228 L~~~F~myD~v~eii~l~a~~nG~I~~~el~~ 259 (875)
+..+|...- .+.+ ||..+||..
T Consensus 827 ~i~s~~d~~---------ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 827 AILAFEDWA---------KTKA-YLLLEELVR 848 (890)
T ss_pred HHHHHHHHH---------cchh-HHHHHHHHh
Confidence 999999886 4444 899988876
No 192
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=55.46 E-value=64 Score=29.34 Aligned_cols=84 Identities=12% Similarity=-0.012 Sum_probs=53.3
Q ss_pred CCCCcCHHHHhhhh----CCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCChhhhHHHHHhhhccccceE
Q 002830 167 EDGLLAREDFGECI----GMVDTKEFAVGIFDALARRRGQKIGKITKEELREFWLQISDQSFDARLQIFFDIVDELGEFT 242 (875)
Q Consensus 167 ~dG~L~~~eF~~~~----g~~~~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~~~~s~d~kL~~~F~myD~v~eii 242 (875)
.||.++.+|-..+- .+..+.....++.+.+.. -. +...++.+|...+....+.+.+.|++.+--++.
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~l~~~~~~~~~~r~~~l~~l~~------ 82 (106)
T cd07316 12 ADGRVSEAEIQAARALMDQMGLDAEARREAIRLFNE-GK--ESDFGLEEYARQFRRACGGRPELLLQLLEFLFQ------ 82 (106)
T ss_pred ccCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-hC--cCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH------
Confidence 68999998887762 222233345556653332 22 333788888887766545677777776655655
Q ss_pred eeccCCCCccCHHHHHHHH
Q 002830 243 SYYFPCKRVSHLWQLETLL 261 (875)
Q Consensus 243 ~l~a~~nG~I~~~el~~ll 261 (875)
.+-+||.++..|-..+-
T Consensus 83 --vA~ADG~~~~~E~~~l~ 99 (106)
T cd07316 83 --IAYADGELSEAERELLR 99 (106)
T ss_pred --HHHHcCCCCHHHHHHHH
Confidence 24468999988876543
No 193
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=52.07 E-value=57 Score=40.21 Aligned_cols=118 Identities=15% Similarity=0.206 Sum_probs=79.2
Q ss_pred hHHHHhcccccccccCCC-cchHHHHHHHHHHHhccC--CCCCcCHHHHhhhh---CCCCCHHHHHHHHHHHHhhCCCCC
Q 002830 131 GAKRALNGLRFISKTAGA-SDAEELWRLVESRFESLA--EDGLLAREDFGECI---GMVDTKEFAVGIFDALARRRGQKI 204 (875)
Q Consensus 131 ~~~~~~~~l~~i~~~~~~-~~~~~~w~~v~~~F~~l~--~dG~L~~~eF~~~~---g~~~~~~f~~~lF~al~~~~~~~~ 204 (875)
.|..-..||+.|...... ...+..=.++...|++-| .+|.++..+-.+++ .+.-+...+.++|...+. .+ +
T Consensus 110 ~a~~wV~gl~~l~s~~~~~~~~~~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~-~~--~ 186 (746)
T KOG0169|consen 110 DANIWVSGLRKLISRSKSMRQRSRREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDN-SQ--T 186 (746)
T ss_pred HHHHHhhhHHHHHhccchhhhcchHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHh-hc--c
Confidence 444455788877644211 111112246778888887 89999999988885 333445688899987633 33 8
Q ss_pred CcccHHHHHHHHHhhcCCChhhhHHHHHhhhccccceEeeccCCCCccCHHHHHHHHHhc
Q 002830 205 GKITKEELREFWLQISDQSFDARLQIFFDIVDELGEFTSYYFPCKRVSHLWQLETLLLQR 264 (875)
Q Consensus 205 g~I~f~Ef~~~~~~~~~~s~d~kL~~~F~myD~v~eii~l~a~~nG~I~~~el~~ll~~~ 264 (875)
+.+..+||..+-...+... .+.++|.-|- . ..++++.++|.+.+...
T Consensus 187 ~k~~~~~~~~~~~~~~~rp---ev~~~f~~~s---------~-~~~~ls~~~L~~Fl~~~ 233 (746)
T KOG0169|consen 187 GKLEEEEFVKFRKELTKRP---EVYFLFVQYS---------H-GKEYLSTDDLLRFLEEE 233 (746)
T ss_pred ceehHHHHHHHHHhhccCc---hHHHHHHHHh---------C-CCCccCHHHHHHHHHHh
Confidence 9999999999877666543 5666666654 2 37888888888877655
No 194
>PLN02292 ferric-chelate reductase
Probab=50.38 E-value=21 Score=44.22 Aligned_cols=58 Identities=21% Similarity=0.222 Sum_probs=43.3
Q ss_pred cccchhHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCccccc--hHHHHHHHHHHH-HHHHHHHHHhhh
Q 002830 447 LTGVEGVTGIVMVVLMAIAFTLATHKFRKNGVRLPSPFNRLTG--FNAFWYSHHLTA-IVYILLIVHGNF 513 (875)
Q Consensus 447 ~~~~~g~tGiv~lvll~il~~~S~~~~Rr~~~~~~~~~~~~~~--Ye~F~~~H~L~~-i~~ill~~H~~~ 513 (875)
+..++--+|+++..+|.++++.+. |++ +|-.+|| ||.|-..|+.++ +++++.++|+..
T Consensus 166 l~~vg~R~Gila~~~lpll~l~~~---Rnn------~L~~ltG~s~e~f~~yHRWlGrii~ll~~lH~i~ 226 (702)
T PLN02292 166 LDSIAVRLGLVGNICLAFLFYPVA---RGS------SLLAAVGLTSESSIKYHIWLGHLVMTLFTSHGLC 226 (702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---cCC------HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556788888888888777664 543 4677888 999999999987 556667899864
No 195
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=49.38 E-value=30 Score=36.85 Aligned_cols=86 Identities=20% Similarity=0.200 Sum_probs=53.0
Q ss_pred CCCCcCHHHHhhhh-----CCCCCH-------HHHHHHHHHHHhhCCCCCCcccHHHHHHHHH-hhcC--CChhhhHHHH
Q 002830 167 EDGLLAREDFGECI-----GMVDTK-------EFAVGIFDALARRRGQKIGKITKEELREFWL-QISD--QSFDARLQIF 231 (875)
Q Consensus 167 ~dG~L~~~eF~~~~-----g~~~~~-------~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~-~~~~--~s~d~kL~~~ 231 (875)
.||.|++.==++++ |-.+++ .-+..||...+- +.|+.|+-.|...-+- .+.. +...+.-+++
T Consensus 69 mDGhLNrgFhQEvflgkdLggfDedaeprrsrrklmviFsKvDV---NtDrkisAkEmqrwImektaEHfqeameeSkth 145 (362)
T KOG4251|consen 69 MDGHLNRGFHQEVFLGKDLGGFDEDAEPRRSRRKLMVIFSKVDV---NTDRKISAKEMQRWIMEKTAEHFQEAMEESKTH 145 (362)
T ss_pred cccccchhhhhhheeccCCCCcccccchhHHHHHHHHHHhhccc---CccccccHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 56777665444442 222222 234455554333 3389999999876432 1211 1112456789
Q ss_pred HhhhccccceEeeccCCCCccCHHHHHHHHHhc
Q 002830 232 FDIVDELGEFTSYYFPCKRVSHLWQLETLLLQR 264 (875)
Q Consensus 232 F~myD~v~eii~l~a~~nG~I~~~el~~ll~~~ 264 (875)
|+.+| .|+||.|+.+|++--+..+
T Consensus 146 FraVD---------pdgDGhvsWdEykvkFlas 169 (362)
T KOG4251|consen 146 FRAVD---------PDGDGHVSWDEYKVKFLAS 169 (362)
T ss_pred eeeeC---------CCCCCceehhhhhhHHHhh
Confidence 99999 9999999999999866554
No 196
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=48.88 E-value=89 Score=31.24 Aligned_cols=26 Identities=12% Similarity=-0.023 Sum_probs=22.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhc
Q 002830 390 DNINFHKTIACAIIIGVVLHVGNHLA 415 (875)
Q Consensus 390 ~~~~fHk~ia~~i~v~~~iH~i~h~~ 415 (875)
....+|+++|.+.++..+++.+..+.
T Consensus 45 ~~~~~H~~~G~~~~~~~~~~~~~~~~ 70 (188)
T PF00033_consen 45 LLRWLHFSLGIVFLALFLLRILWRLF 70 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45789999999999999999987764
No 197
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=48.57 E-value=43 Score=41.76 Aligned_cols=55 Identities=24% Similarity=0.251 Sum_probs=39.7
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCccccc--hHHHHHHHHHHHH-HHHHHHHHhhh
Q 002830 450 VEGVTGIVMVVLMAIAFTLATHKFRKNGVRLPSPFNRLTG--FNAFWYSHHLTAI-VYILLIVHGNF 513 (875)
Q Consensus 450 ~~g~tGiv~lvll~il~~~S~~~~Rr~~~~~~~~~~~~~~--Ye~F~~~H~L~~i-~~ill~~H~~~ 513 (875)
+..-+|+++.++|.++++++. |.+ ++..++| ||.|-..|..++- ++++..+|+..
T Consensus 155 va~R~G~la~~~Lpll~llv~---Rnn------~l~~ltGis~e~~i~fHrWlGr~~~llallH~i~ 212 (722)
T PLN02844 155 VATRFGLLAEACLALLLLPVL---RGL------ALFRLLGIQFEASVRYHVWLGTSMIFFATVHGAS 212 (722)
T ss_pred HHHHHHHHHHHHHHHHHHHHh---ccc------HHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445568888888888777665 432 3456667 9999999999874 45566899863
No 198
>PRK10639 formate dehydrogenase-O subunit gamma; Provisional
Probab=48.52 E-value=94 Score=32.59 Aligned_cols=23 Identities=22% Similarity=0.324 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHH-HHHHhh
Q 002830 490 FNAFWYSHHLTAIVYIL-LIVHGN 512 (875)
Q Consensus 490 Ye~F~~~H~L~~i~~il-l~~H~~ 512 (875)
.+.....|.+.++++++ +++|.+
T Consensus 146 ~~~~~~~H~~~a~~~i~~iivHiy 169 (211)
T PRK10639 146 IRFALMLHSFAAVALIVVIMVHIY 169 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57789999999876654 467764
No 199
>KOG2557 consensus Uncharacterized conserved protein, contains TLDc domain [Function unknown]
Probab=48.02 E-value=25 Score=39.61 Aligned_cols=98 Identities=15% Similarity=0.146 Sum_probs=70.0
Q ss_pred HHHHHHHhccC--CCCCcCHHHHhhhhCC----CCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCChhhhHH
Q 002830 156 RLVESRFESLA--EDGLLAREDFGECIGM----VDTKEFAVGIFDALARRRGQKIGKITKEELREFWLQISDQSFDARLQ 229 (875)
Q Consensus 156 ~~v~~~F~~l~--~dG~L~~~eF~~~~g~----~~~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~~~~s~d~kL~ 229 (875)
+.++..-+... ...+.+++.+-...-- ..++-..+++|+.+-.+.. +...+.+.+.........++.|++.+
T Consensus 20 ~~l~~~kk~~~~ga~~k~t~dq~v~~~~~~~~~~l~e~~~q~~f~~vk~~~q--~~~~~l~k~~~~~~~~~~gt~dq~a~ 97 (427)
T KOG2557|consen 20 KKLDDLKKLFVSGASNKQTNDQYVSYPVFQEYFGLSESLGQRMFDMVKQRRQ--DDKMTLEKLVIAKATYEKGTDDQIAE 97 (427)
T ss_pred HHHHHHhhccccccchhhhhhhhhhcccccchhhhhhhccceEeeeccCccC--CccchHHHHhhHHhhhccCcccHHHH
Confidence 44444444332 2345667777665311 1233466788875444443 77899999999888899999999999
Q ss_pred HHHhhhccccceEeeccCCCCccCHHHHHHHHHhc
Q 002830 230 IFFDIVDELGEFTSYYFPCKRVSHLWQLETLLLQR 264 (875)
Q Consensus 230 ~~F~myD~v~eii~l~a~~nG~I~~~el~~ll~~~ 264 (875)
.+..+-| .++||....+++++.+...
T Consensus 98 mL~~~~~---------~sgn~~~~~~q~eQ~~~~v 123 (427)
T KOG2557|consen 98 MLYQTLD---------VNGNGVLSRSQLEQFLVVV 123 (427)
T ss_pred HHHHHHh---------hccccccchhHHHHHHHHH
Confidence 9999999 9999999999999977653
No 200
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=47.90 E-value=49 Score=39.07 Aligned_cols=61 Identities=16% Similarity=0.273 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhccC-CCCCcCHHHHhhhh---CCCC---CHHHHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 002830 153 ELWRLVESRFESLA-EDGLLAREDFGECI---GMVD---TKEFAVGIFDALARRRGQKIGKITKEELREFW 216 (875)
Q Consensus 153 ~~w~~v~~~F~~l~-~dG~L~~~eF~~~~---g~~~---~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~ 216 (875)
+.-.++...|.++| .+|.++..|+...+ ++.. ..+..+++.... ..|. +|.|+|+||+...
T Consensus 16 ~El~~l~~kF~~~d~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~-~~~~--~g~v~fe~f~~~~ 83 (627)
T KOG0046|consen 16 EELRELKEKFNKLDDQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEV-GVDA--DGRVEFEEFVGIF 83 (627)
T ss_pred HHHHHHHHHHHhhcCCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhcc-CCCc--CCccCHHHHHHHH
Confidence 45678999999998 99999999999886 2221 234455555432 2233 8999999999844
No 201
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=45.07 E-value=1.3e+02 Score=30.06 Aligned_cols=22 Identities=9% Similarity=0.096 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh
Q 002830 392 INFHKTIACAIIIGVVLHVGNH 413 (875)
Q Consensus 392 ~~fHk~ia~~i~v~~~iH~i~h 413 (875)
..+|.++|.++++..+++.+..
T Consensus 43 ~~~H~~~G~~~~~~~~~~l~~~ 64 (182)
T PF01292_consen 43 RNWHVIAGLLLFALLIFRLLWR 64 (182)
T ss_pred HhHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999998887755
No 202
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=41.06 E-value=4.2e+02 Score=27.21 Aligned_cols=86 Identities=16% Similarity=0.092 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCccccccccccCCccchhhcccchhHHHHHHHHHHHHHHHhhhh
Q 002830 392 INFHKTIACAIIIGVVLHVGNHLACDFPRLVNSSPEEFAPMSTQFHNKKPTYKYLLTGVEGVTGIVMVVLMAIAFTLATH 471 (875)
Q Consensus 392 ~~fHk~ia~~i~v~~~iH~i~h~~~~f~~l~~~~~~~~~~l~~~f~~~~p~~~~~~~~~~g~tGiv~lvll~il~~~S~~ 471 (875)
...|..+|.+++.+.++=.+.-...- |..-++.| ..|-+ ++|++++.+|++...++..
T Consensus 80 r~~H~~~g~~ll~~~~L~~lGG~~~~-----------~~~~~~lf--~spH~---------~~Gl~~~~L~~~s~al~~~ 137 (175)
T PF13301_consen 80 RDRHYRLGFALLAFMGLGALGGQLGT-----------YRQNGKLF--WSPHL---------WAGLAVVGLMAFSAALVPQ 137 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHH-----------HHcCCCCc--cCchH---------HHHHHHHHHHHHHHHHHHH
Confidence 57788888888777765544333111 10011122 23333 5788888888776544433
Q ss_pred hhhhcCCCCCCCCccccchHHHHHHHHHHHH-HHHHHHHHhh
Q 002830 472 KFRKNGVRLPSPFNRLTGFNAFWYSHHLTAI-VYILLIVHGN 512 (875)
Q Consensus 472 ~~Rr~~~~~~~~~~~~~~Ye~F~~~H~L~~i-~~ill~~H~~ 512 (875)
..+-+ -......|..+.. +.+++..|+.
T Consensus 138 i~~g~-------------~~~~R~lHi~lN~~~l~Lf~~q~i 166 (175)
T PF13301_consen 138 IQKGN-------------RPWARRLHIYLNSLALLLFAWQAI 166 (175)
T ss_pred HccCC-------------chhHHHHHHHHHHHHHHHHHHHHH
Confidence 33322 2357789988865 4455567764
No 203
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=39.40 E-value=27 Score=38.97 Aligned_cols=90 Identities=16% Similarity=0.048 Sum_probs=59.9
Q ss_pred HHHHHHhccC--CCCCcCHHHHhhh-------hCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCChhhh
Q 002830 157 LVESRFESLA--EDGLLAREDFGEC-------IGMVDTKEFAVGIFDALARRRGQKIGKITKEELREFWLQISDQSFDAR 227 (875)
Q Consensus 157 ~v~~~F~~l~--~dG~L~~~eF~~~-------~g~~~~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~~~~s~d~k 227 (875)
+|..=|+.+- .++.......... |+- .=+.-+.=||+.|+. +. |+.+|..|+.. +.-..-|.=
T Consensus 212 RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p-~CKds~gWMFnklD~-N~--Dl~Ld~sEl~~----I~ldknE~C 283 (434)
T KOG3555|consen 212 RLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILP-ICKDSLGWMFNKLDT-NY--DLLLDQSELRA----IELDKNEAC 283 (434)
T ss_pred HHHHHHHHHHhhhhccCcchhhcccccccccccCc-chhhhhhhhhhcccc-cc--ccccCHHHhhh----hhccCchhH
Confidence 6666677664 3333333333322 211 123458889998776 33 99999999875 333334667
Q ss_pred HHHHHhhhccccceEeeccCCCCccCHHHHHHHHHh
Q 002830 228 LQIFFDIVDELGEFTSYYFPCKRVSHLWQLETLLLQ 263 (875)
Q Consensus 228 L~~~F~myD~v~eii~l~a~~nG~I~~~el~~ll~~ 263 (875)
++-||++|| ...||.|+-.|..--+..
T Consensus 284 ikpFfnsCD---------~~kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 284 IKPFFNSCD---------TYKDGSISTNEWCYCFQK 310 (434)
T ss_pred HHHHHhhhc---------ccccCccccchhhhhhcc
Confidence 899999999 888999999998876543
No 204
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=37.06 E-value=7.5e+02 Score=29.77 Aligned_cols=58 Identities=16% Similarity=0.228 Sum_probs=28.3
Q ss_pred cccchHHHHHHHHHHHHHHHHH-----HHHhhh---hhhhccccccchhhhhhHhHHHHHhhcccee
Q 002830 486 RLTGFNAFWYSHHLTAIVYILL-----IVHGNF---LYLAHEWYQKTTWMYISAPLLLYVAERNLRT 544 (875)
Q Consensus 486 ~~~~Ye~F~~~H~L~~i~~ill-----~~H~~~---~~~~~~w~~~~~w~y~~~~~~ly~~drl~R~ 544 (875)
|+-=|.-|..+=.+.+++.+.. ++|... .+....|....+|. ++..+.+..+-.+.|.
T Consensus 377 Kl~lYr~F~n~l~~~Vvas~~~i~~~~~~~~~~~~~~~Wk~~Wv~~a~W~-~l~~~iLvvI~~LWrP 442 (518)
T KOG2568|consen 377 KLSLYRKFTNTLAFSVVASFAFILVETIFYSIMSCNKDWKERWVDTAFWP-LLFFLILVVIMFLWRP 442 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhccHH-HHHHHHHHHHHHhcCC
Confidence 3444888887755544333222 333311 11223556666776 3333455555555553
No 205
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=35.36 E-value=58 Score=32.53 Aligned_cols=60 Identities=23% Similarity=0.297 Sum_probs=38.2
Q ss_pred HHHHHhccC-----CCCCcCHHHHhhhh---C---CCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhc
Q 002830 158 VESRFESLA-----EDGLLAREDFGECI---G---MVDTKEFAVGIFDALARRRGQKIGKITKEELREFWLQIS 220 (875)
Q Consensus 158 v~~~F~~l~-----~dG~L~~~eF~~~~---g---~~~~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~~ 220 (875)
|++.|..++ ....++-..|..++ | -+-+..-++-+|..+-. .+ ...|+|+||+++|..+.
T Consensus 1 L~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~-k~--~~~I~f~~F~~aL~~lA 71 (154)
T PF05517_consen 1 LEAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKA-KG--ARKITFEQFLEALAELA 71 (154)
T ss_dssp HHHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT--SS---SEEEHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhc-CC--CcccCHHHHHHHHHHHH
Confidence 345566653 45577788887764 3 23455567888876333 22 45699999999998765
No 206
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=35.35 E-value=89 Score=29.01 Aligned_cols=53 Identities=21% Similarity=0.402 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcCCCCCCCCccccchHHHHHHHHHHHHH-HHHHHHHhhhh
Q 002830 455 GIVMVVLMAIAFTLATHKFRKNGVRLPSPFNRLTGFNAFWYSHHLTAIV-YILLIVHGNFL 514 (875)
Q Consensus 455 Giv~lvll~il~~~S~~~~Rr~~~~~~~~~~~~~~Ye~F~~~H~L~~i~-~ill~~H~~~~ 514 (875)
|+++++.+.++++++. |++... + ..-.+++.+...|..++.+ +++..+|+...
T Consensus 2 G~~a~~~l~~~~~l~~---R~~~l~---~-~~~~~~~~~~~~Hr~lg~~~~~~~~~H~~~~ 55 (125)
T PF01794_consen 2 GILAFALLPLVFLLGL---RNSPLA---R-LTGISFDRLLRFHRWLGRLAFFLALLHGVLY 55 (125)
T ss_pred HHHHHHHHHHHHHHHH---hhhHHH---H-HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666552 322100 0 0011388899999999865 45668998643
No 207
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=35.27 E-value=73 Score=27.83 Aligned_cols=63 Identities=17% Similarity=0.173 Sum_probs=45.4
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCC--ChhhhHHHHHhhhccccceEeeccC----CCCccCHHHHHHHHH
Q 002830 189 AVGIFDALARRRGQKIGKITKEELREFWLQISDQ--SFDARLQIFFDIVDELGEFTSYYFP----CKRVSHLWQLETLLL 262 (875)
Q Consensus 189 ~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~~~~--s~d~kL~~~F~myD~v~eii~l~a~----~nG~I~~~el~~ll~ 262 (875)
++.||+.... + .+.++.++|..|+..--+. ..++..+.+++-|. .+ ..+.+++++|...|.
T Consensus 2 i~~if~~ys~--~--~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~---------~~~~~~~~~~lt~~gF~~fL~ 68 (83)
T PF09279_consen 2 IEEIFRKYSS--D--KEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFE---------PDERNRQKGQLTLEGFTRFLF 68 (83)
T ss_dssp HHHHHHHHCT--T--SSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHH---------HHHHHHCTTEEEHHHHHHHHH
T ss_pred HHHHHHHHhC--C--CCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHc---------cchhhcccCCcCHHHHHHHHC
Confidence 4678876533 3 7899999999999653332 24667777888886 43 359999999999885
Q ss_pred hc
Q 002830 263 QR 264 (875)
Q Consensus 263 ~~ 264 (875)
+.
T Consensus 69 S~ 70 (83)
T PF09279_consen 69 SD 70 (83)
T ss_dssp ST
T ss_pred CC
Confidence 54
No 208
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=31.34 E-value=57 Score=29.75 Aligned_cols=30 Identities=13% Similarity=0.245 Sum_probs=23.7
Q ss_pred hhhHHHHHhhhccccceEeeccCCCCccCHHHHHHHHHhc
Q 002830 225 DARLQIFFDIVDELGEFTSYYFPCKRVSHLWQLETLLLQR 264 (875)
Q Consensus 225 d~kL~~~F~myD~v~eii~l~a~~nG~I~~~el~~ll~~~ 264 (875)
+||+|.+|..+ +|.||.++...|..+|.+.
T Consensus 2 ~dKyRylFsli----------sd~~g~~~~~~l~~lL~d~ 31 (90)
T PF09069_consen 2 EDKYRYLFSLI----------SDSNGCMDQRKLGLLLHDV 31 (90)
T ss_dssp HHHHHHHHHHH----------S-TTS-B-HHHHHHHHHHH
T ss_pred hHHHHHHHHHH----------cCCCCCCcHHHHHHHHHHH
Confidence 68999999998 5789999999999998764
No 209
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=28.86 E-value=31 Score=38.29 Aligned_cols=63 Identities=16% Similarity=0.129 Sum_probs=47.0
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHhhcC-CChhhhHHHHHhhhccccceEeeccCCCCccCHHHHHHHHHhc
Q 002830 190 VGIFDALARRRGQKIGKITKEELREFWLQISD-QSFDARLQIFFDIVDELGEFTSYYFPCKRVSHLWQLETLLLQR 264 (875)
Q Consensus 190 ~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~~~-~s~d~kL~~~F~myD~v~eii~l~a~~nG~I~~~el~~ll~~~ 264 (875)
.--|.-|+. +. ++.|+.+|..-|-..+.. ..+..=-+-||+-|| .+.|-.|+++|+..-|...
T Consensus 336 ~w~F~qLdk-N~--nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCD---------lNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 336 HWYFNQLDK-NS--NNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCD---------LNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred eeeeeeecc-cc--cCccchhhcchHHHHHHhhccHHHHhhhcchhcc---------cCCCceecHHHHhhhhccc
Confidence 334554443 44 889999998888877554 344555688999999 9999999999998866543
No 210
>PF11658 DUF3260: Protein of unknown function (DUF3260); InterPro: IPR017744 This protein was identified by the partial phylogenetic profiling algorithm [] as part of the system for cellulose biosynthesis in bacteria, and in fact is found in cellulose biosynthesis gene regions. The protein was designated YhjU in Salmonella enteritidis, where disruption of its gene disrupts cellulose biosynthesis and biofilm formation [].
Probab=27.21 E-value=95 Score=36.82 Aligned_cols=31 Identities=10% Similarity=0.056 Sum_probs=17.5
Q ss_pred hhhcccchhHHHHHHHHHHHHHHHhhhhhhh
Q 002830 444 KYLLTGVEGVTGIVMVVLMAIAFTLATHKFR 474 (875)
Q Consensus 444 ~~~~~~~~g~tGiv~lvll~il~~~S~~~~R 474 (875)
++++.-...|.-+.+++++++.+..-.+|+|
T Consensus 85 ~EL~~Rfin~~ml~a~~vl~v~y~~ls~wiR 115 (518)
T PF11658_consen 85 LELAGRFINWQMLGAAFVLLVAYLFLSQWIR 115 (518)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhhhhh
Confidence 3444444455555555555556655567777
No 211
>COG4485 Predicted membrane protein [Function unknown]
Probab=27.13 E-value=1.5e+02 Score=36.58 Aligned_cols=54 Identities=22% Similarity=0.322 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchhhhhhHhHHHHHhhccceeeEe
Q 002830 490 FNAFWYSHHLTAIVYILLIVHGNFLYLAHEWYQKTTWMYISAPLLLYVAERNLRTRRS 547 (875)
Q Consensus 490 Ye~F~~~H~L~~i~~ill~~H~~~~~~~~~w~~~~~w~y~~~~~~ly~~drl~R~~r~ 547 (875)
|..|-+.|.+-+-.+..++.-|.....-..| .-.+++.|+++|+++|+++--+.
T Consensus 128 ~~~~~~ll~~~~st~~almsf~~Sqlei~~W----lDvfilLPLiIlGl~rli~ErK~ 181 (858)
T COG4485 128 FQKFSILLKLRISTFYALMSFGVSQLEIYTW----LDVFILLPLIILGLERLITERKI 181 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhheEEeehH----HHHHHHHHHHHHHHHHHHhhccc
Confidence 5666666665554444444444322211233 11466778999999999875443
No 212
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=25.20 E-value=2.4e+02 Score=33.69 Aligned_cols=62 Identities=15% Similarity=0.151 Sum_probs=44.1
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHhhcC--CCh-hhhHHHHHhhhccccceEeeccCCCCccCHHHHHHHHHhc
Q 002830 190 VGIFDALARRRGQKIGKITKEELREFWLQISD--QSF-DARLQIFFDIVDELGEFTSYYFPCKRVSHLWQLETLLLQR 264 (875)
Q Consensus 190 ~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~~~--~s~-d~kL~~~F~myD~v~eii~l~a~~nG~I~~~el~~ll~~~ 264 (875)
.+-|.+++ |+ +|.|+..|+.+.+..... +.+ ++..+.+-+-.+ .|.+|.+++|||..+....
T Consensus 22 ~~kF~~~d--~~--~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~---------~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 22 KEKFNKLD--DQ--KGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVG---------VDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred HHHHHhhc--CC--CCeeehHHhHHHHHHhcccccchhHHHHHHHHhccC---------CCcCCccCHHHHHHHHHhh
Confidence 44555555 33 899999999998876443 222 345555555556 8999999999999977654
No 213
>TIGR03368 cellulose_yhjU cellulose synthase operon protein YhjU. This protein was identified by the partial phylogenetic profiling algorithm (PubMed:16930487) as part of the system for cellulose biosynthesis in bacteria, and in fact is found in cellulose biosynthesis gene regions. The protein was designated YhjU in Salmonella enteritidis, where disruption of its gene disrupts cellulose biosynthesis and biofilm formation (PubMed:11929533).
Probab=24.79 E-value=1.2e+02 Score=35.97 Aligned_cols=18 Identities=17% Similarity=0.394 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 002830 318 LLWMMAMAGLFAWKFIQY 335 (875)
Q Consensus 318 ~l~~~in~~lf~~~~~~y 335 (875)
-+|+++=++||+.++.++
T Consensus 4 NlYFl~Kf~L~~~G~l~f 21 (518)
T TIGR03368 4 NLYFILKFALFWAGYLNF 21 (518)
T ss_pred hHHHHHHHHHHHcCcCCc
Confidence 467888888888877664
No 214
>PF14358 DUF4405: Domain of unknown function (DUF4405)
Probab=24.08 E-value=87 Score=26.19 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=21.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhh
Q 002830 390 DNINFHKTIACAIIIGVVLHVGNH 413 (875)
Q Consensus 390 ~~~~fHk~ia~~i~v~~~iH~i~h 413 (875)
.....|.+.|.+.++++++|.+.|
T Consensus 40 ~~~~iH~~~g~~~~~l~~~Hl~lh 63 (64)
T PF14358_consen 40 FWRNIHLWAGYLFLILIILHLGLH 63 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 446899999999999999999865
No 215
>COG5522 Predicted integral membrane protein [Function unknown]
Probab=23.82 E-value=1.5e+02 Score=31.11 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhh
Q 002830 490 FNAFWYSHHLTAIVYILLIVHGNFL 514 (875)
Q Consensus 490 Ye~F~~~H~L~~i~~ill~~H~~~~ 514 (875)
|-.|+.+|......-+++++|+..+
T Consensus 126 ~~lffitH~svfls~v~~~vhfreR 150 (236)
T COG5522 126 FLLFFITHISVFLSAVILIVHFRER 150 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccC
Confidence 8899999988766667778998753
No 216
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.58 E-value=93 Score=32.54 Aligned_cols=36 Identities=19% Similarity=0.408 Sum_probs=27.9
Q ss_pred hhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 002830 300 SFTFRCLVLENWQRGWILLLWMMAMAGLFAWKFIQYKN 337 (875)
Q Consensus 300 ~~~~~~~~~~~~~~i~~l~l~~~in~~lf~~~~~~y~~ 337 (875)
.-.+++|+.+|++- +++.+++...++|.|+|++-+.
T Consensus 11 l~~ik~wwkeNGk~--li~gviLg~~~lfGW~ywq~~q 46 (207)
T COG2976 11 LEAIKDWWKENGKA--LIVGVILGLGGLFGWRYWQSHQ 46 (207)
T ss_pred HHHHHHHHHHCCch--hHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888999954 4778888888999999987544
No 217
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=21.90 E-value=5.1e+02 Score=32.45 Aligned_cols=24 Identities=21% Similarity=0.462 Sum_probs=14.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHH
Q 002830 309 ENWQRGWILLLWMMAMAGLFAWKF 332 (875)
Q Consensus 309 ~~~~~i~~l~l~~~in~~lf~~~~ 332 (875)
.....+-|+++|..+.++=|+..|
T Consensus 26 ~~~~~~~~~~~w~~~~~~d~~~~~ 49 (697)
T PF09726_consen 26 STFLYVKFLLVWALVLLADFMLEF 49 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334455567788877776555443
No 218
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=21.81 E-value=3.5e+02 Score=30.47 Aligned_cols=98 Identities=9% Similarity=-0.041 Sum_probs=68.9
Q ss_pred HHHHHHHhccC--CCCCcCHHHHhhhh----CCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCChhhhHH
Q 002830 156 RLVESRFESLA--EDGLLAREDFGECI----GMVDTKEFAVGIFDALARRRGQKIGKITKEELREFWLQISDQSFDARLQ 229 (875)
Q Consensus 156 ~~v~~~F~~l~--~dG~L~~~eF~~~~----g~~~~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~~~~s~d~kL~ 229 (875)
+.++.-|..+| .+|.++--|--..+ |-....+-.+--|. +++-+. ||.+.-.+|-..+. ...+=.+-++-
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk-~f~v~e--Dg~~ge~~ls~ilq-~~lgv~~l~v~ 334 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFK-RFSVAE--DGISGEHILSLILQ-VVLGVEVLRVP 334 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHH-hccccc--ccccchHHHHHHHH-HhcCcceeecc
Confidence 68899999998 77877655433322 33445566676675 455565 88888877766554 44454566778
Q ss_pred HHHhhhccccceEeeccCCCCccCHHHHHHHHHhccc
Q 002830 230 IFFDIVDELGEFTSYYFPCKRVSHLWQLETLLLQRDT 266 (875)
Q Consensus 230 ~~F~myD~v~eii~l~a~~nG~I~~~el~~ll~~~~~ 266 (875)
-+|.-.| ...+|.|+.+|+..+...-+.
T Consensus 335 ~lf~~i~---------q~d~~ki~~~~f~~fa~~~p~ 362 (412)
T KOG4666|consen 335 VLFPSIE---------QKDDPKIYASNFRKFAATEPN 362 (412)
T ss_pred ccchhhh---------cccCcceeHHHHHHHHHhCch
Confidence 8888888 777899999999998765443
No 219
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=21.66 E-value=1.4e+02 Score=39.70 Aligned_cols=62 Identities=10% Similarity=0.221 Sum_probs=48.2
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHh-------hcCCChhhhHHHHHhhhccccceEeeccCCCCccCHHHHHHHHH
Q 002830 190 VGIFDALARRRGQKIGKITKEELREFWLQ-------ISDQSFDARLQIFFDIVDELGEFTSYYFPCKRVSHLWQLETLLL 262 (875)
Q Consensus 190 ~~lF~al~~~~~~~~g~I~f~Ef~~~~~~-------~~~~s~d~kL~~~F~myD~v~eii~l~a~~nG~I~~~el~~ll~ 262 (875)
.-+|+- ||++. +|.+|+++|...+.. ...|.+|-+++.+-+++| .+.+|||++.|.-..|-
T Consensus 2256 s~~fkh-FDkek--~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vD---------P~r~G~Vsl~dY~afmi 2323 (2399)
T KOG0040|consen 2256 SMMFKH-FDKEK--NGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVD---------PNRDGYVSLQDYMAFMI 2323 (2399)
T ss_pred HHHHHH-hchhh--ccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcC---------CCCcCcccHHHHHHHHH
Confidence 357764 55555 999999999887743 224556669999999999 99999999999888664
Q ss_pred h
Q 002830 263 Q 263 (875)
Q Consensus 263 ~ 263 (875)
.
T Consensus 2324 ~ 2324 (2399)
T KOG0040|consen 2324 S 2324 (2399)
T ss_pred h
Confidence 4
No 220
>PF14145 YrhK: YrhK-like protein
Probab=21.37 E-value=1.8e+02 Score=24.35 Aligned_cols=50 Identities=22% Similarity=0.507 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchhhhhhHhHHHHHhhccce
Q 002830 490 FNAFWYSHHLTAIVYILLIVHGNFLYLAHEWYQKTTWMYISAPLLLYVAERNLR 543 (875)
Q Consensus 490 Ye~F~~~H~L~~i~~ill~~H~~~~~~~~~w~~~~~w~y~~~~~~ly~~drl~R 543 (875)
||++...=-++ -.++++-|...++.+.++...+|+|++.. +++.+--++|
T Consensus 4 ye~~~~~~d~~---~~~~FliGSilfl~~~~~~~g~wlFiiGS-~~f~i~~~i~ 53 (59)
T PF14145_consen 4 YEIISTVNDFI---GGLLFLIGSILFLPESLYTAGTWLFIIGS-ILFLIRPIIR 53 (59)
T ss_pred hHHHHHHHHHH---HHHHHHHHHHHHcCchhHHHHHHHHHHHH-HHHHHHHHHH
Confidence 66665533222 22233447767776666666788888654 4444443333
No 221
>cd03497 SQR_TypeB_1_TM Succinate:quinone oxidoreductase (SQR) Type B subfamily 1, transmembrane subunit; composed of proteins similar to Bacillus subtilis SQR. SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. Bacillus subtilis SQR reduces low potential quinones such as menaquinone. SQR is also called succinate dehydrogenase (Sdh) or Complex II and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type B as they contain one transmembrane subunit and two heme groups. The heme and quinone binding sites reside on the transmembrane subunit. The transmembrane subunit of Bacillus subtilis SQR is also called Sdh cytochrome b558 subunit. The structural arrangement allows efficient electron transfer between the catalytic subunit, through iron-sulfur centers,
Probab=21.18 E-value=3.7e+02 Score=28.21 Aligned_cols=103 Identities=14% Similarity=0.191 Sum_probs=52.4
Q ss_pred hHHHHHHHH-HHHHHHHHHHhhhcccccccccCCCCCccccccccccCCccchhhcccchhHHHHH-HHHHHHHHHHhhh
Q 002830 393 NFHKTIACA-IIIGVVLHVGNHLACDFPRLVNSSPEEFAPMSTQFHNKKPTYKYLLTGVEGVTGIV-MVVLMAIAFTLAT 470 (875)
Q Consensus 393 ~fHk~ia~~-i~v~~~iH~i~h~~~~f~~l~~~~~~~~~~l~~~f~~~~p~~~~~~~~~~g~tGiv-~lvll~il~~~S~ 470 (875)
..|-..|.+ .+++.+.|...-+.. ..+++.|+..+..++. .|..+ +..++ +++.+++=...++
T Consensus 8 ~~~slTGl~pL~lFl~~Hl~gN~~i------~~g~~afn~ya~~l~~-~~~l~--------~~~~~ll~~~~l~H~~~a~ 72 (207)
T cd03497 8 RLHSLLGVVPIGLFLIEHLLTNSSA------ASGPEGFNAAVNFMHS-LPGLL--------LIEIFGIFLPLLFHAIYGI 72 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HhCHHHHHHHHHHHHh-ChHHH--------HHHHHHHHHHHHHHHHHHH
Confidence 479999999 999999998876521 1245566555555542 23111 11121 1122222223344
Q ss_pred hhhhhcCCCCCCCCccccchHHHHHHHHHHHHH-HHHHHHHhhh
Q 002830 471 HKFRKNGVRLPSPFNRLTGFNAFWYSHHLTAIV-YILLIVHGNF 513 (875)
Q Consensus 471 ~~~Rr~~~~~~~~~~~~~~Ye~F~~~H~L~~i~-~ill~~H~~~ 513 (875)
..-+|++.+ |...... =+.-|.+|.+.+++ ++++++|-..
T Consensus 73 ~l~~~~~~~-~~~y~~~--~~~a~~~mritG~ill~Fli~Hl~~ 113 (207)
T cd03497 73 YIAFTAKSN-TGRYDYF--RNWMYTLQRITGIILLVFIAWHVWH 113 (207)
T ss_pred HHHHHhhhc-CCCCccc--chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332333222 2222221 24557888888654 5556777543
No 222
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=20.22 E-value=6.8e+02 Score=24.73 Aligned_cols=26 Identities=12% Similarity=0.179 Sum_probs=22.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhh
Q 002830 389 DDNINFHKTIACAIIIGVVLHVGNHL 414 (875)
Q Consensus 389 d~~~~fHk~ia~~i~v~~~iH~i~h~ 414 (875)
+-...+|.+.+.+++++.++|..+.+
T Consensus 147 ~~~~~iH~~~~~ll~~~i~~Hi~~a~ 172 (188)
T PF00033_consen 147 EWARLIHFILAYLLLAFIIIHIYAAI 172 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568999999999999999988766
No 223
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=20.07 E-value=31 Score=35.62 Aligned_cols=53 Identities=15% Similarity=0.173 Sum_probs=36.9
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHhhcCCChhhhHHHHHhhhccccceEeeccCCCCccCHHHHHHH
Q 002830 195 ALARRRGQKIGKITKEELREFWLQISDQSFDARLQIFFDIVDELGEFTSYYFPCKRVSHLWQLETL 260 (875)
Q Consensus 195 al~~~~~~~~g~I~f~Ef~~~~~~~~~~s~d~kL~~~F~myD~v~eii~l~a~~nG~I~~~el~~l 260 (875)
.|+..-. ||+++-.|+.-.-..+- ..|.=.+-||.-|| +|.||||.++|.-.-
T Consensus 195 qld~~p~--d~~~sh~el~pl~ap~i--pme~c~~~f~e~cd---------~~nd~~ial~ew~~c 247 (259)
T KOG4004|consen 195 QLDQHPI--DGYLSHTELAPLRAPLI--PMEHCTTRFFETCD---------LDNDKYIALDEWAGC 247 (259)
T ss_pred cccCCCc--cccccccccccccCCcc--cHHhhchhhhhccc---------CCCCCceeHHHhhcc
Confidence 3555444 88888888864322211 23556778999999 999999999988653
No 224
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=20.01 E-value=4.7e+02 Score=23.59 Aligned_cols=80 Identities=14% Similarity=0.025 Sum_probs=45.5
Q ss_pred CCCCcCHHHHhhhh-------CCC-CCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhhcCCChhhhHHHHHhhhccc
Q 002830 167 EDGLLAREDFGECI-------GMV-DTKEFAVGIFDALARRRGQKIGKITKEELREFWLQISDQSFDARLQIFFDIVDEL 238 (875)
Q Consensus 167 ~dG~L~~~eF~~~~-------g~~-~~~~f~~~lF~al~~~~~~~~g~I~f~Ef~~~~~~~~~~s~d~kL~~~F~myD~v 238 (875)
.||.++.+|...+. ++. .+..-+.++|+...+.- -..+..++...+....+ .++|...+--+++
T Consensus 15 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~~~r~~~~~~~~~-- 86 (111)
T cd07176 15 ADGDIDDAELQAIEALLRSLPVLSGFDRERLIALLDKLLALL----RPEGLAALLKAAAKLLP--PELRETAFAVAVD-- 86 (111)
T ss_pred hccCCCHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHhCC--HHHHHHHHHHHHH--
Confidence 68999998887662 222 33345566666544420 02355677666655544 4555543333333
Q ss_pred cceEeeccCCCCccCHHHHHHH
Q 002830 239 GEFTSYYFPCKRVSHLWQLETL 260 (875)
Q Consensus 239 ~eii~l~a~~nG~I~~~el~~l 260 (875)
.+.+||.++..|-.-+
T Consensus 87 ------ia~aDG~~~~~E~~~L 102 (111)
T cd07176 87 ------IAAADGEVDPEERAVL 102 (111)
T ss_pred ------HHHccCCCCHHHHHHH
Confidence 2347799998876654
Done!