Query 002831
Match_columns 875
No_of_seqs 162 out of 191
Neff 6.7
Searched_HMMs 46136
Date Thu Mar 28 11:40:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002831.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002831hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3691 Exocyst complex subuni 100.0 2.4E-99 5E-104 864.6 48.1 741 9-874 176-972 (982)
2 PF10474 DUF2451: Protein of u 98.5 3.8E-06 8.2E-11 89.3 18.0 202 639-858 11-220 (234)
3 PF04437 RINT1_TIP1: RINT-1 / 97.9 0.00071 1.5E-08 80.0 21.5 341 425-831 96-451 (494)
4 PF04091 Sec15: Exocyst comple 96.3 0.11 2.4E-06 57.8 16.2 140 714-854 162-306 (311)
5 PF06046 Sec6: Exocyst complex 88.6 29 0.00064 41.8 20.1 165 679-852 352-526 (566)
6 PF07553 Lipoprotein_Ltp: Host 65.0 20 0.00043 28.8 5.5 40 813-852 5-45 (48)
7 KOG2180 Late Golgi protein sor 61.9 3.9E+02 0.0085 33.1 25.9 212 630-855 492-719 (793)
8 KOG3691 Exocyst complex subuni 57.5 35 0.00076 42.5 8.3 286 506-804 571-890 (982)
9 PF12854 PPR_1: PPR repeat 52.6 16 0.00035 26.6 2.9 22 153-174 11-32 (34)
10 PF07393 Sec10: Exocyst comple 44.2 7.1E+02 0.015 31.1 17.3 133 716-854 559-698 (710)
11 KOG2286 Exocyst complex subuni 34.0 7E+02 0.015 31.1 14.3 175 681-873 466-647 (667)
12 KOG2163 Centromere/kinetochore 31.2 1.1E+03 0.023 29.1 15.7 221 613-859 476-708 (719)
13 PF09693 Phage_XkdX: Phage unc 31.2 75 0.0016 24.4 3.7 36 815-852 1-36 (40)
14 cd05134 RasGAP_RASA3 RASA3 (or 27.8 2.1E+02 0.0045 32.2 7.9 44 451-494 75-118 (310)
15 TIGR01669 phage_XkdX phage unc 27.6 1.1E+02 0.0024 24.3 4.1 37 814-852 5-41 (45)
16 PHA02503 putative transcriptio 25.2 53 0.0012 26.3 1.9 20 454-473 25-44 (57)
17 PF11989 Dsl1_C: Retrograde tr 22.9 7.1E+02 0.015 27.8 10.8 125 743-871 155-284 (291)
18 PF10191 COG7: Golgi complex c 22.4 1.3E+03 0.029 29.2 14.5 150 680-837 568-751 (766)
19 PF13258 DUF4049: Domain of un 20.8 41 0.0009 35.8 0.7 17 30-46 67-83 (318)
No 1
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.4e-99 Score=864.64 Aligned_cols=741 Identities=20% Similarity=0.264 Sum_probs=551.7
Q ss_pred hhhccCcHHHHHHHHhhHhhHHHHHHHHHHHHHhcCCCCccccccccccCCCCCcchhhccccCCCCCccccccccCCCC
Q 002831 9 LVQVGALQDVRSELTKLRGVLFYKVLEDLHAHLYNRGEYSSAVLSMHEMDDEVPTTVAVAYTTNNSQPLSRRTRLKGDNQ 88 (875)
Q Consensus 9 l~~igaL~dlR~yL~~qe~~Lfd~liEELh~hlYlKs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~rt~~~~~n~ 88 (875)
|.+|.+|+|+|++|+.+++.|+++|+||||+|+|+|+..-. ...+ -++.|+|.|
T Consensus 176 L~~VEgLs~l~~ele~~~~~L~~~L~eELv~ily~ks~~~~--l~~~----------------~~~~~~~s~-------- 229 (982)
T KOG3691|consen 176 LDGVEGLSDLRSELEGLLSHLEDILIEELVSILYLKSVAYP--LVSY----------------CRTNPLSSR-------- 229 (982)
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhh--HHhh----------------hcCCchhhH--------
Confidence 78999999999999999999999999999999999974210 0111 012222111
Q ss_pred CCcccCcCCCCCCCCCCCCCCCCcccccccccccc-hhhhhccCC----ch--hHHHHhhcC-CCcchHHHHHHHHHHHH
Q 002831 89 FGVHGLADGSHSSTFDGHDEDGSLEAHDETSLDGL-SIGWLANST----PD--EFVEAIRKS-DAPLHVKYLQTMVECLC 160 (875)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-l~~~l~~~~----~~--~~~e~~~~~-~~~~sf~yi~~Lle~L~ 160 (875)
++ +|+|+..+.+. ...++....+ .....+... .+ ...+++.-. ||+.+=.+...+++..+
T Consensus 230 ------l~-~~~~~~in~t~-----l~~sr~~~ea~~~k~~~g~~sv~~~~~~~~~~~l~~~~pe~~sslf~~il~k~~~ 297 (982)
T KOG3691|consen 230 ------LN-DFLYNNINTTT-----LGTSRQLLEALCHKSDAGSGSVRDIRIVLEKEDLLLSLPEANSSLFRRILEKFTT 297 (982)
T ss_pred ------HH-HHhhcccCccc-----cCccHHHHHHHHHHhhcCCcchhhHHHHHhhccccccchhhHHHHHHHHHHHHhh
Confidence 11 23344444432 1111111111 000011100 01 223344444 66666666669999999
Q ss_pred hhCChHHHHHHHHhhhhhHHHHHHHHHHHHhHHHhhccCcccccccccCCcccccccccccccccccccccCCccccccc
Q 002831 161 ILGKVAAAGAIICQRLRPTIHEIITSKIKAHAQLINSSRSAIGQAAQTGTTGLHFMKGQLRSYQLPKQKRQNGISLSGTL 240 (875)
Q Consensus 161 ~LgkL~~A~~~i~qRl~~Elh~iV~~~ik~~~e~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~s~~~~~ 240 (875)
++.|+|+++.+|..|+.+|+|++|. |++.. +..++|+.+..+..
T Consensus 298 ~~~k~p~~~n~i~~~~~~el~niv~---kSt~~-i~~~g~~~~e~at~-------------------------------- 341 (982)
T KOG3691|consen 298 VDSKSPAIVNKISERINVELVNIVS---KSTYD-ISLSGETDREHATF-------------------------------- 341 (982)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhhh---ccchh-hhccccchhhhhhc--------------------------------
Confidence 9999999999999999999999998 65556 77777765433321
Q ss_pred ccccccccccccCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhccCCCCCCccccccCCCCCCCCccccCCCCh
Q 002831 241 LAVSPVSALMAPMGKAQAAAKELLDSILDSVVRIFENHVVVGELLESRSSRHDINTPKSMIADANWNPDSEASVTGGYSI 320 (875)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~L~ell~~if~Kf~ai~q~Hrvv~e~~~~i~~r~~~~~~~~~~~~~~~~~~~~~s~~~~y~~ 320 (875)
+..-.+|++|||.||.||+++++.|+++++-... .+.-.|+ .+-...|++
T Consensus 342 -------------~tn~f~L~ell~~if~kf~a~aq~Ha~~~~~s~~----~~vv~P~-------------~sq~d~f~~ 391 (982)
T KOG3691|consen 342 -------------DTNHFMLLELLEEIFTKFEAAAQKHASSLHKSLQ----NDVVSPK-------------VSQKDTFDF 391 (982)
T ss_pred -------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----ccccCCc-------------ccCCCcccH
Confidence 1112379999999999999999999999983331 0111111 111236999
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCcccchh-hhHHHH----------hhhhcCCCCCCcCCCCCCCccceeeecCccccCCc
Q 002831 321 GFSMTVLQSECQQLICEILRATPEAASA-DAAVQT----------ARLASKAPSKEKRDGSEDGLTFAFRFTDATISIPN 389 (875)
Q Consensus 321 ~~vW~~iQsEi~~LL~dYL~~~~~~~~~-~~~~q~----------~~~~~~~p~~~k~~~~~~~~~~lF~~s~~~~s~~~ 389 (875)
.++|.++|+||+.||.+|++..+..... ..+... ..|+...+..+|. ..|.|+++.++..++.
T Consensus 392 ~~~W~k~qs~ielllsE~i~~nn~~~~~~e~s~~~sp~s~~r~~~~~f~~e~~~~~~s------~~f~~~~~~~a~~k~~ 465 (982)
T KOG3691|consen 392 TDFWQKAQSEIELLLSEYIDNNNNSVKGTEMSINNSPASNERKKLFDFTNEIAVEPNS------NLFYHRINELANEKAP 465 (982)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCccccccccccCCCCCcchhHHHHhhccccCCCCc------ccchhHHHHHhhhccc
Confidence 9999999999999999999877744332 111110 1111111121111 2334444444444333
Q ss_pred ccccccccccccCC---Cc---ccccCCcccccccCCCcchhHHhhHHHHHHHHHHHhhcCCCCcccCcchhHHHHHHHH
Q 002831 390 QGADLIRQGWSRRG---TN---VLQEGYGTAAVLPEQGIYLAASIYRPVLQFTDKVASMLPQKYSQLGNDGLLAFVENFV 463 (875)
Q Consensus 390 ~~~~~l~~g~~~s~---~~---~~~e~~~~~~~Lv~psvFNm~~il~P~L~Fi~~~~~ilp~~~s~~~~~~l~~Fld~Fv 463 (875)
+ ++++++. .+ .+.++++..+.+|+||+|||++||+|++.|++.++.++|.+ .+.+|.++.|+|+||
T Consensus 466 ~------l~~qrs~~~~~~~el~~g~s~e~~e~ic~Psvfni~vI~~pll~fie~te~~l~~~--p~q~c~l~~Fm~~yi 537 (982)
T KOG3691|consen 466 E------LILQRSNASVSTIELFSGSSKEIVELICKPSVFNIKVILPPLLRFIEETESILKNP--PIQPCSLRNFMDEYI 537 (982)
T ss_pred h------hhhhhhhhhhccchhccCcchhhhcccCCcccceeeehhhHHHHHHHHHHHHcCCC--CCCCchHHHHHHHHH
Confidence 2 2222221 11 14445566678999999999999999999999999999876 356899999999999
Q ss_pred HhhccccHHHHHHHHHHHHhcCCCcccccccccccccccccCCCcccccHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Q 002831 464 KDHLLPTMFVDYRKGVQQAISSPAAFRPRAHTAATYVPSIEKGRPVLQGLLAIDFLAKEVLGWAQAMPKFAADLVKYVQT 543 (875)
Q Consensus 464 ~~vFLPql~~~~~~~~~~~~~~~daf~~~~~~~~~~~~~~~~~rPIlksa~~f~~li~~l~~ml~t~P~y~~~~~~li~~ 543 (875)
+++||||+..++...|+.++++.|||+....|+.. |..+..+|++|+++.+..-+..+...+++++.|.+-|..++|.
T Consensus 538 ~~sFl~qv~~~m~~~ie~~~k~~~a~~l~~s~~~i--~i~k~~~~l~q~~~~ve~~L~~v~n~~~~l~~~~~~~l~m~~~ 615 (982)
T KOG3691|consen 538 KGSFLPQVYKEMSSHIEGIMKDVDAFRLHRSWKII--PIFKCHLPLLQSFHIVEDYLPIVANLAVDLYELSDYLLNMVCN 615 (982)
T ss_pred HHHhHHHHHHHHHHHhHhhcccCcceeeecCHhhh--hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999653 3556677777777777777778888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhh------hhhhhhhcccchHhHHHhcCccccCCCC-CCCCC--CC-----CCCccCchhhHhh
Q 002831 544 FLERTYERCRTSYMEAVL------EKQSYMLIGRHDIDKLLRLEPASASLPN-GQLDS--VS-----SVNDAETPGVESE 609 (875)
Q Consensus 544 ~L~~yye~c~~~y~~lv~------~~~s~~w~~~~di~~lm~~~p~~~~l~~-~~~~~--~~-----~~~~~~~~E~E~~ 609 (875)
.+..|++-|.+.|++.+. ++++++|++|+||+++++..|+|....- ++... .+ .+.+....|.|+.
T Consensus 616 ~~~~Y~~~c~~a~~g~~~~~~~~~~~is~aWl~Dddisr~l~klpNw~~~s~~~~~~~~r~E~e~~lq~~~r~~kE~e~l 695 (982)
T KOG3691|consen 616 HLSDYLDICRAALRGIVQHVSEVKRKISVAWLKDDDISRQLKKLPNWKNPSLEGQNELCREEEESFLQAGDRNIKESELL 695 (982)
T ss_pred HHHHHHHHHHHHHhcccCCCcchhhhhhHHHhccchhHHHHHhccCCcccccccccchhhhhcchHhHhhhcccchHhhh
Confidence 999999999999999987 4689999999999999999999986432 11111 00 0122233566666
Q ss_pred HHHHhhc-CCCCCccccccChhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCccccCCCCCCCCCC-------CCcchHH
Q 002831 610 LRELFLS-LRPIRQENLIHDENKLILLASLSDSLEYVADSIERLGRATLRESNLVEESRKPHHNRS-------SSAPSRD 681 (875)
Q Consensus 610 l~~~~~~-~~~l~~~dli~d~~~l~~La~L~~Sl~Wla~~l~~L~~~~~~~s~~~~~~~~~~~~r~-------s~~l~~~ 681 (875)
..++.+. +..++..||++|...++++|.+++|++|+++++....+..+... ...+.+......- ..-....
T Consensus 696 i~nLgt~~q~~~s~~~il~~m~~lK~~a~m~ES~~w~a~r~rs~~~~l~~~~-ll~~n~~~~~~~~~dl~~l~dd~~~s~ 774 (982)
T KOG3691|consen 696 ISNLGTDSQLSISVSDILNDMSDLKQLANMHESLEWFADRARSGFDFLPIDN-LLGNNPALMKGYLTDLIELYDDFYKSA 774 (982)
T ss_pred hcccchhhhcccCHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhccccchhh-hhcCCccccccccccchhhhcchHHHH
Confidence 6655533 56899999999999999999999999999999877666543321 1110000000000 1124568
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC-CC--ccCCCCCCCCChHHHHHHHHHHHHHHhhccccchhhhhh
Q 002831 682 LASFADEYRKLAIDCLKVLRVEMQLETIFHLQEMTS-RD--YLEDQDAEEPDDFIISLTSQITRRDEEMAPFIAEEKRNY 758 (875)
Q Consensus 682 f~~~~~~f~~La~~~Ll~LrlEvR~~~iy~L~~l~~-~~--y~~~~~~~epD~~I~~Ln~dL~~~de~ls~~L~~~k~~f 758 (875)
|+.++++|++||++||+.||+|||++|||||.++.. ++ ++-..+++||||.|+.||++|.++|++|+.+|+|+|++|
T Consensus 775 ~ee~~~~fq~la~~cLLlLhlEVRv~Cfh~l~~~s~~~n~~i~~~~~s~e~D~~V~aL~k~l~~~e~klk~~L~e~k~~y 854 (982)
T KOG3691|consen 775 YEELADSFQRLAFDCLLLLHLEVRVQCFHYLNPLSKLRNTSIVNRDVSGEPDPSVVALNKDLSTTEEKLKACLNEWKRRY 854 (982)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhccCCceeecccccCCCCHHHHHHHHHHHHHHHHHHhhcCHHHHHH
Confidence 999999999999999999999999999999996543 33 333344999999999999999999999999999999999
Q ss_pred hhccHHHHHHHHHHHhchhhhhhhHhhHHHHHhcHHHHHHHhhcCCCCChHHHHhhhHHHHHHHHhcCCCHHHHHHHHHh
Q 002831 759 IFGGICGIAANASIKALADMKNINLFGVQQICRNSIALEQALAAIPSIDSEAVRRRLDRVRTYYELLNMPFEALLAFVTE 838 (875)
Q Consensus 759 IF~GL~~li~~~lI~~~~~I~~iN~nGvkkm~rNI~aLQQ~LknI~~~~e~~v~~~l~ra~~yyeL~~~~~e~ll~~i~e 838 (875)
||+|||+|++.+||+++++|++||++|||||||||+||||+|+||++.|+ +||++||+||+||+++|++|++++.+
T Consensus 855 IFeGL~hL~s~~LI~~a~~i~~ln~~~ikkMcRNv~~lQQ~Lsnit~~re----vdld~ar~fy~ll~nt~deile~v~d 930 (982)
T KOG3691|consen 855 IFEGLGHLVSSILISGAQYIERLNEGGIKKMCRNVSALQQILSNITESRE----VDLDKARRFYELLQNTADEILEHVID 930 (982)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcccccc----cccHHHHHHHHHHhcCHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999995 79999999999999999999999999
Q ss_pred cCCCCCHHHHHHhhhhccCC-CCC-----chHHHHHHHhhhc
Q 002831 839 HENLFTTTEYASLLKVNVPG-REI-----PSDALDRVSEILS 874 (875)
Q Consensus 839 ~~~~Fs~~Eyk~ll~L~~~~-~~~-----~~~~~~rl~~il~ 874 (875)
++.+||..||+.+++|.|++ .|+ ..++++|+++|+|
T Consensus 931 ~~~qfse~e~~qllrls~rS~~g~~k~~~~~e~~qkl~n~i~ 972 (982)
T KOG3691|consen 931 ARKQFSEPELKQLLRLSYRSLKGDAKRNGRDELLQKLSNIIG 972 (982)
T ss_pred ccccccHHHHHHHHHHHHHhhccccCCCchHHHHHHHHHHHh
Confidence 99999999999999999985 333 4688999999884
No 2
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=98.53 E-value=3.8e-06 Score=89.31 Aligned_cols=202 Identities=13% Similarity=0.174 Sum_probs=153.7
Q ss_pred HHhHHHHHHHHHHhhhhhccCCccccCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhcccc
Q 002831 639 SDSLEYVADSIERLGRATLRESNLVEESRKPHHNRSSSAPSRDLASFADEYRKLAIDCLKV---LRVEMQLETIFHLQEM 715 (875)
Q Consensus 639 ~~Sl~Wla~~l~~L~~~~~~~s~~~~~~~~~~~~r~s~~l~~~f~~~~~~f~~La~~~Ll~---LrlEvR~~~iy~L~~l 715 (875)
.+|+..++..+..++..+.+- -++ +. ...+-.-|..++....+|+.-|..+ .=+++. ..+..|
T Consensus 11 ~ESl~fLa~~l~~~~p~l~~l---Lp~----~~---~~~l~~Fy~~tv~~v~dLr~~iy~~~a~~~l~~~----~i~~~I 76 (234)
T PF10474_consen 11 VESLSFLARQLESLRPYLESL---LPP----NK---RDFLEQFYSQTVSAVPDLREPIYKCVASRLLDLE----QILNSI 76 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---cCc----cc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH----HHHHHH
Confidence 567777777776666554221 000 00 0012233445455555555444422 111111 233355
Q ss_pred cCCCccCCCCCCCCChHHHHHHHHHHHHHHhh-----ccccchhhhhhhhccHHHHHHHHHHHhchhhhhhhHhhHHHHH
Q 002831 716 TSRDYLEDQDAEEPDDFIISLTSQITRRDEEM-----APFIAEEKRNYIFGGICGIAANASIKALADMKNINLFGVQQIC 790 (875)
Q Consensus 716 ~~~~y~~~~~~~epD~~I~~Ln~dL~~~de~l-----s~~L~~~k~~fIF~GL~~li~~~lI~~~~~I~~iN~nGvkkm~ 790 (875)
....|....-..++.++|-.|.+++..+...| ...+|++-++.++.-+-+++.+.||.|...+++.|..|=..|.
T Consensus 77 a~vKWdvkev~~qhs~YVd~l~~~~~~f~~rL~~i~~~~~i~~~~~~~lw~~~i~~~~~~Lveg~s~vkKCs~eGRalM~ 156 (234)
T PF10474_consen 77 ANVKWDVKEVMSQHSSYVDQLVQEFQQFSERLDEISKQGPIPPEVQNVLWDRLIFFAFETLVEGYSRVKKCSNEGRALMQ 156 (234)
T ss_pred HHcCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhhHHHHH
Confidence 56679888889999999999999999999888 5667888999999999999999999999999999999999999
Q ss_pred hcHHHHHHHhhcCCCCChHHHHhhhHHHHHHHHhcCCCHHHHHHHHHhcCCCCCHHHHHHhhhhccCC
Q 002831 791 RNSIALEQALAAIPSIDSEAVRRRLDRVRTYYELLNMPFEALLAFVTEHENLFTTTEYASLLKVNVPG 858 (875)
Q Consensus 791 rNI~aLQQ~LknI~~~~e~~v~~~l~ra~~yyeL~~~~~e~ll~~i~e~~~~Fs~~Eyk~ll~L~~~~ 858 (875)
++.-.+|+.|..++..+.- .+.+.+-.|---|+.+++++.+.+++| ..||...+-+|++..+.+
T Consensus 157 lD~q~~~~~le~l~~~~~~---p~~~~Ve~YIKAyYl~e~e~~~W~~~h-~eYs~~ql~~Lv~~~~~~ 220 (234)
T PF10474_consen 157 LDFQQLQNKLEKLSGIRPI---PNREYVENYIKAYYLPEEELEEWIRTH-TEYSKKQLVGLVNCAAAS 220 (234)
T ss_pred HHHHHHHHHHHHHcCCCCC---ccHHHHHHHHHHHcCCHHHHHHHHHhC-cccCHHHHHHHHHHHHHh
Confidence 9999999999999876532 478888899999999999999999998 899999999999998876
No 3
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=97.93 E-value=0.00071 Score=80.04 Aligned_cols=341 Identities=13% Similarity=0.115 Sum_probs=190.5
Q ss_pred hHHhhHHHHHHHHHHHhhcCCCCcccCcchhHHHHHHHHHhhccccHHHHHHHHHHHHhcCCCccccccccccccccccc
Q 002831 425 AASIYRPVLQFTDKVASMLPQKYSQLGNDGLLAFVENFVKDHLLPTMFVDYRKGVQQAISSPAAFRPRAHTAATYVPSIE 504 (875)
Q Consensus 425 m~~il~P~L~Fi~~~~~ilp~~~s~~~~~~l~~Fld~Fv~~vFLPql~~~~~~~~~~~~~~~daf~~~~~~~~~~~~~~~ 504 (875)
.+.+-.-++.|=+++.+.+.-.. +....++..|..+=.-+.++--=.+...+.++..+.++|||+.+...... ...
T Consensus 96 l~HlI~e~~~FD~~L~~~~~y~~-d~~~~~~~vL~~~~~~~~Wl~~E~~~a~~r~~~i~~s~~aw~~~~~~~~~---~~~ 171 (494)
T PF04437_consen 96 LSHLIDEILSFDKELRSLYGYPG-DWQGSTLDVLCQPDWFDRWLNAEKEFALERFDEIISSPDAWQIDYDDVEA---DSD 171 (494)
T ss_dssp HHHHHHHHHHHHHHHHHTS---S-------CGGGS-HHHHHHHHHHHHHHHHHHHH---------------HTT---SSG
T ss_pred HHHHHHHHHHHHHHHHHHcCCCC-ccchhHHHHhcchHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhccccC---Cch
Confidence 36777788999999988863210 01111222232222224444333444556899999999999988443100 112
Q ss_pred CCCcccccHHHHHHHHHHHHHHHhcchH--HHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccchHhHHHhcC
Q 002831 505 KGRPVLQGLLAIDFLAKEVLGWAQAMPK--FAADLV-KYVQTFLERTYERCRTSYMEAVLEKQSYMLIGRHDIDKLLRLE 581 (875)
Q Consensus 505 ~~rPIlksa~~f~~li~~l~~ml~t~P~--y~~~~~-~li~~~L~~yye~c~~~y~~lv~~~~s~~w~~~~di~~lm~~~ 581 (875)
..+|= ++|..|..++..+..=...+|. |+-.|+ .+=+.+|+.|++++...|++..... .
T Consensus 172 ~~k~t-~~A~~~~~Ll~~it~ry~~L~~~~~rl~Fl~~iql~lld~~~~~L~~~~~~~~~~~----------------s- 233 (494)
T PF04437_consen 172 ELKPT-KSAERFVKLLESITDRYRPLPSLSHRLRFLIDIQLPLLDDYHDRLSQSLEAFESST----------------S- 233 (494)
T ss_dssp GGG-G-GHHHHHHHHHHHHHHHHHHHHH---GG--GHHHHHHHHHHTHHHHHHHHHHHHHT-------------------
T ss_pred hhcch-HHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----------------c-
Confidence 23333 5899999999999888888884 566667 8889999999999999998643210 0
Q ss_pred ccccCCCCCCCCCCCCCCccCchhhHhhHHHHhhcCCCCCccccccChhHHHHHHHHHHhHHHHHHHHHHhhhhhccC--
Q 002831 582 PASASLPNGQLDSVSSVNDAETPGVESELRELFLSLRPIRQENLIHDENKLILLASLSDSLEYVADSIERLGRATLRE-- 659 (875)
Q Consensus 582 p~~~~l~~~~~~~~~~~~~~~~~E~E~~l~~~~~~~~~l~~~dli~d~~~l~~La~L~~Sl~Wla~~l~~L~~~~~~~-- 659 (875)
. ..-..+...+..+|..++|..|+...|......+---
T Consensus 234 ----------------~------------------------~~~~~~~~~l~~l~~~lnsa~yi~~~L~eW~e~~~Flq~ 273 (494)
T PF04437_consen 234 ----------------T------------------------LASLSGDSGLERLCKILNSANYIENVLREWSEDVFFLQM 273 (494)
T ss_dssp ------------------------------------------SCEEHHHHHHHHHHHHHHHHHHHHHHHHHCTSHHHH--
T ss_pred ----------------c------------------------hhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCeeehh
Confidence 0 0011134667778888999999999876666532100
Q ss_pred ---CccccCC-CCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC-CCccCC-----CCCCCC
Q 002831 660 ---SNLVEES-RKPHHNRSSSAPSRDLASFADEYRKLAIDCLKVLRVEMQLETIFHLQEMTS-RDYLED-----QDAEEP 729 (875)
Q Consensus 660 ---s~~~~~~-~~~~~~r~s~~l~~~f~~~~~~f~~La~~~Ll~LrlEvR~~~iy~L~~l~~-~~y~~~-----~~~~ep 729 (875)
.....+. ...-..+.++.-..-|+..+..|+.|..+++-.+---++-..=-.+.+..+ ..|... ..+..|
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~siFde~i~~y~~l~~~~~~~iv~~v~~~~k~~lk~Y~k~~~W~~~~~~~~~~~~~~ 353 (494)
T PF04437_consen 274 RAKESESSNNSLEDIANETSSEEGSIFDETISAYEKLRKRMLESIVDRVVKEFKASLKAYFKRSQWSSIESPSDSSPLSP 353 (494)
T ss_dssp ----------HHHHHHHHHTT--S-TTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTHHHHT--GGGT------------
T ss_pred hccchhhcccccccccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCCcccccccccCCC
Confidence 0000000 000000000011236999999999998877665533332222222222222 345322 234666
Q ss_pred ChHHHHHHHHHHHHHHhhccccchhhhhhhhccHHHHHHHHHHHhchhhhhhhHhhHHHHHhcHHHHHHHhhcCCCCChH
Q 002831 730 DDFIISLTSQITRRDEEMAPFIAEEKRNYIFGGICGIAANASIKALADMKNINLFGVQQICRNSIALEQALAAIPSIDSE 809 (875)
Q Consensus 730 D~~I~~Ln~dL~~~de~ls~~L~~~k~~fIF~GL~~li~~~lI~~~~~I~~iN~nGvkkm~rNI~aLQQ~LknI~~~~e~ 809 (875)
.|.....-.-|...=..+...|++....-|+..+...++..|+...-.-.+.|.+|+.|+...+-+|-..+..-...++
T Consensus 354 S~el~~~L~~L~~~L~~L~~~L~~~~f~~i~r~ia~~l~~~l~~~Il~~n~Fs~~Ga~Ql~~D~~~L~~~~~~~~~~p~- 432 (494)
T PF04437_consen 354 SPELVPALSLLRSRLSFLERSLPPADFRRIWRRIASKLDDYLWESILMSNKFSRAGAAQLQFDMRALFSVFSQYTPRPE- 432 (494)
T ss_dssp -GGGHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHHHHHHHHTTTTTS-B-HHHHHHHHHHHHHHHTTS--TTSGG--
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhhhcCeeChhHHHHHHHHHHHHHHHHHhhccCHH-
Confidence 7776666667777777778889999999999999999999999999888999999999999999777777776555554
Q ss_pred HHHhhhHHHHHHHHhcCCCHHH
Q 002831 810 AVRRRLDRVRTYYELLNMPFEA 831 (875)
Q Consensus 810 ~v~~~l~ra~~yyeL~~~~~e~ 831 (875)
..|.+.+.--.|+.++.+.
T Consensus 433 ---~~f~~l~E~~~LL~L~~~~ 451 (494)
T PF04437_consen 433 ---AFFKRLREACKLLNLPYGS 451 (494)
T ss_dssp ---HHHHHHHHHHHHHGGGG-C
T ss_pred ---HHHHHHHHHHHHcCCCCcc
Confidence 4788888888888876553
No 4
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=96.31 E-value=0.11 Score=57.84 Aligned_cols=140 Identities=18% Similarity=0.283 Sum_probs=74.9
Q ss_pred cccCCCccCCCCCCCCChHHHHHHHHHHHHHHhhccccchhhhhhhhccHHHHHHHHHHHhc--hhhhhhhHhhHHHHHh
Q 002831 714 EMTSRDYLEDQDAEEPDDFIISLTSQITRRDEEMAPFIAEEKRNYIFGGICGIAANASIKAL--ADMKNINLFGVQQICR 791 (875)
Q Consensus 714 ~l~~~~y~~~~~~~epD~~I~~Ln~dL~~~de~ls~~L~~~k~~fIF~GL~~li~~~lI~~~--~~I~~iN~nGvkkm~r 791 (875)
.+..-+|.+...+++|+.+|.++..-|..+=+..-..||+.-+..+.-|...-|+..|+.-. ..+++||.+|++.+-.
T Consensus 162 ela~yDW~~~~~~~~ps~yi~dli~fL~~~f~s~l~~LP~~v~~~~~~~a~~his~~l~~~Ll~~~vk~in~~al~~~~~ 241 (311)
T PF04091_consen 162 ELAEYDWTPTEPPGEPSDYINDLIQFLETTFSSTLTNLPPSVKQLVYFSACDHISESLLDLLLSDDVKRINMNALQNFDL 241 (311)
T ss_dssp TT--TT--------S--HHHHHHHHHHHHHHHTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHT---------TTHHHHHH
T ss_pred hhcccceecCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHH
Confidence 44455799999999999999999999999988888899999888888888888888888888 9999999999999999
Q ss_pred cHHHHHHHhhcCCCCCh--HHHHhhhHHHHHHHHhcCC-CHHHHHHHHHhcCCCCCHHHHHHhhhh
Q 002831 792 NSIALEQALAAIPSIDS--EAVRRRLDRVRTYYELLNM-PFEALLAFVTEHENLFTTTEYASLLKV 854 (875)
Q Consensus 792 NI~aLQQ~LknI~~~~e--~~v~~~l~ra~~yyeL~~~-~~e~ll~~i~e~~~~Fs~~Eyk~ll~L 854 (875)
+|-.|.+-.+++..... .....-|...||.-+|+.. ++++..+.-.. ...|+.-..+.+..|
T Consensus 242 Dv~~lE~f~~~~~~~~~~~~~L~~~F~eLrQlvdLl~s~~~~~y~d~~~r-~~kY~~v~p~~~~~l 306 (311)
T PF04091_consen 242 DVKYLESFADSLPVPGNNIPSLRETFAELRQLVDLLLSDDWEEYLDPGIR-ERKYSRVKPEKAIKL 306 (311)
T ss_dssp HHHHHHHHHTT-SSSS--SSTTGGGGHHHHHHHHHHH-----------------------------
T ss_pred HHHHHHHHHHhCcCcccccccHHHHHHHHHHHHHHHhcCCHHHHhCcccc-ccccCCCCHHHHHHH
Confidence 99999999999932211 0112468889999998875 45666443333 234555455444433
No 5
>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex. Sec6 interacts with Sec8, Sec10 and Exo70.These exocyst proteins localise to regions of active exocytosis-at the growing ends of interphase cells and in the medial region of cells undergoing cytokinesis-in an F-actin-dependent and exocytosis- independent manner [].; PDB: 2FJI_2.
Probab=88.63 E-value=29 Score=41.84 Aligned_cols=165 Identities=16% Similarity=0.236 Sum_probs=104.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCccCCCCCCCCChHHHHHHHHHHHHHHhhccccchhhhhh
Q 002831 679 SRDLASFADEYRKLAIDCLKVLRVEMQLETIFHLQEMTSRDYLEDQDAEEPDDFIISLTSQITRRDEEMAPFIAEEKRNY 758 (875)
Q Consensus 679 ~~~f~~~~~~f~~La~~~Ll~LrlEvR~~~iy~L~~l~~~~y~~~~~~~epD~~I~~Ln~dL~~~de~ls~~L~~~k~~f 758 (875)
...|+.+...|.+++..|...|--+|=..+=-++..++...|..+ ..+..+-..+..+-.-++.+|.+.-+..
T Consensus 352 ~~~~~~~~~~~~~l~~~~~~~L~~~if~Dl~p~~~~Lft~~W~~~-------~~~~~I~~Ti~dY~~d~~~~l~~~~~~~ 424 (566)
T PF06046_consen 352 SSDLEELMDGFDDLAKECCQYLLEEIFNDLKPHFKKLFTKKWYSG-------EAVDTICATIEDYLQDFQHYLRPPYFQE 424 (566)
T ss_dssp HHHHCTTHHHHHHHHHHHHHHHHHHHHHCTHHHHCTTTSGGGCTS--------HHHHHHHHHHHHHHHHCCCS-HHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCcCcCcCc-------chHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 457889999999999999999988877765556666777778755 5667777777777778888787776666
Q ss_pred hhccHHHHHHHHHHHhchh--h----hhhhHhhHHHHHhcHHHHHHHhhcCCCCChHHHHhhhHHHHHHHHhc-CCCHHH
Q 002831 759 IFGGICGIAANASIKALAD--M----KNINLFGVQQICRNSIALEQALAAIPSIDSEAVRRRLDRVRTYYELL-NMPFEA 831 (875)
Q Consensus 759 IF~GL~~li~~~lI~~~~~--I----~~iN~nGvkkm~rNI~aLQQ~LknI~~~~e~~v~~~l~ra~~yyeL~-~~~~e~ 831 (875)
+...+-.-+-.-.|.++.. + +.....++.||.+++-.|++-+...... +.+...++.-..+-+++ ..+++.
T Consensus 425 l~~~~~~~~v~~Yl~~l~~kk~~~~~~~~~~~~a~~i~~D~~~l~~~F~~~~~~--~~~~~~~~~l~~l~~ll~~~d~~~ 502 (566)
T PF06046_consen 425 LIEELHDRVVKEYLRALMKKKIKFKNKEERKEAAERIRRDAEQLKSFFSKLGSK--SEVKSSFDVLEDLLELLRLEDPEM 502 (566)
T ss_dssp HHHHHHHHHHHHHHHGGGG---------CCCCCHHHHHHHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHH-HS-CCC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhccc--ccccchHHHHHHHHHHHhcCCHHH
Confidence 6655544444434444322 2 3467889999999999999999998822 12233444444444555 333333
Q ss_pred H---HHHHHhcCCCCCHHHHHHhh
Q 002831 832 L---LAFVTEHENLFTTTEYASLL 852 (875)
Q Consensus 832 l---l~~i~e~~~~Fs~~Eyk~ll 852 (875)
+ +..+...-+.++.+-+.+||
T Consensus 503 i~l~~~~l~~~ypD~~~~~v~alL 526 (566)
T PF06046_consen 503 IKLEVSSLLQKYPDISEEHVEALL 526 (566)
T ss_dssp HHHHHHHHHCC-TT--SHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHH
Confidence 3 23334434566666666666
No 6
>PF07553 Lipoprotein_Ltp: Host cell surface-exposed lipoprotein; InterPro: IPR011434 This domain is found as 1-3 copies in a small family of proteins of unknown function.
Probab=65.01 E-value=20 Score=28.83 Aligned_cols=40 Identities=20% Similarity=0.313 Sum_probs=35.1
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHhc-CCCCCHHHHHHhh
Q 002831 813 RRLDRVRTYYELLNMPFEALLAFVTEH-ENLFTTTEYASLL 852 (875)
Q Consensus 813 ~~l~ra~~yyeL~~~~~e~ll~~i~e~-~~~Fs~~Eyk~ll 852 (875)
-++.+|+.|-+...++.++|.+.+... |..||.+|-...+
T Consensus 5 ~Al~~Ak~Y~~~~~~Sk~~l~~QL~se~ge~Ft~e~A~YAv 45 (48)
T PF07553_consen 5 NALKKAKSYLKTMHMSKQGLYDQLTSEYGEGFTEEEAQYAV 45 (48)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHhhcccCCCHHHHHHHH
Confidence 478999999999999999999999865 7899999876655
No 7
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.94 E-value=3.9e+02 Score=33.14 Aligned_cols=212 Identities=12% Similarity=0.179 Sum_probs=147.3
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHhhhhhccCCc--cccCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002831 630 NKLILLASLSDSLEYVADSIERLGRATLRESN--LVEESRKPHHNRSSSAPSRDLASFADEYRKLAIDCLKVLRVEMQLE 707 (875)
Q Consensus 630 ~~l~~La~L~~Sl~Wla~~l~~L~~~~~~~s~--~~~~~~~~~~~r~s~~l~~~f~~~~~~f~~La~~~Ll~LrlEvR~~ 707 (875)
+.+.-.|+...+.+|...-..++.+..+.-.+ ...+ ..|..--..|..+-..|+-.+=-|.---
T Consensus 492 d~l~di~~~lst~e~~~~tt~qle~kl~e~~~~~~~~~--------------vs~s~~r~~~~~~~~~s~q~lv~D~e~a 557 (793)
T KOG2180|consen 492 DQLLDICCILSTAEYCLATTIQLEKKLKEIVDASYIKG--------------VSFSEEREVFSSKISVSLQFLVQDLENA 557 (793)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------------cchHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 56667888999999999888777654322111 1111 2355666677788888999999999999
Q ss_pred HHhhcccccCCCccCCCCCCCCChHHHHHHHHHHHHHHhhccccchhhhhhhhccH--HHHHHHHHHHhchhhhhhhHhh
Q 002831 708 TIFHLQEMTSRDYLEDQDAEEPDDFIISLTSQITRRDEEMAPFIAEEKRNYIFGGI--CGIAANASIKALADMKNINLFG 785 (875)
Q Consensus 708 ~iy~L~~l~~~~y~~~~~~~epD~~I~~Ln~dL~~~de~ls~~L~~~k~~fIF~GL--~~li~~~lI~~~~~I~~iN~nG 785 (875)
|+--+++|....|.--...++-.++|.++|.-+.++--.+...+.+....|.--.+ +.-.-.-|+.++..-+.++.+|
T Consensus 558 ~~~~lt~msk~~~~~l~~vgDQss~v~s~~~h~~q~~~~i~~~~~~~r~~f~~fc~r~a~~f~~kf~~~l~R~k~~s~~g 637 (793)
T KOG2180|consen 558 LDPDLTPMSKMQWQNLEGVGDQSSYVSSLNFHLSQFVPLIRDALALDRKYFAQFCVRLAASFIPKFLNVLFRAKPISVVG 637 (793)
T ss_pred hCcccChHHHHHHHHhcCccccchhhHHHHHHHHhhhHHHHHHhccccchHHHhhHHHHhhcchHHHHHHHHhhhHhhhH
Confidence 99999998877775555667999999999999999988888888777663221111 1111123566666777899999
Q ss_pred HHHHHhcHHHHHHHhhcCCCC-------Ch--HHHHhhhHHHHHHHHhcC---CCHHHHHHHHHhcCCCCCHHHHHHhhh
Q 002831 786 VQQICRNSIALEQALAAIPSI-------DS--EAVRRRLDRVRTYYELLN---MPFEALLAFVTEHENLFTTTEYASLLK 853 (875)
Q Consensus 786 vkkm~rNI~aLQQ~LknI~~~-------~e--~~v~~~l~ra~~yyeL~~---~~~e~ll~~i~e~~~~Fs~~Eyk~ll~ 853 (875)
+.|++...-+|--.|-.+.+- ++ --|..+|+++-.+.-.+. .++++..+..-.=-+.-+..||..+|+
T Consensus 638 ~EQLlldt~slK~~ll~lp~~~s~~n~~~~y~~~~~~~m~~~e~iiK~lm~p~~~~~~f~e~yikL~~~~~~a~~~~vLe 717 (793)
T KOG2180|consen 638 AEQLLLDTESLKDALLTLPPLRSLFNDKRPYKRHVDNNMTQAEMIIKVLMTPLDPADDFYEQYIKLLPDPDSAEWQKVLE 717 (793)
T ss_pred HHHHHHHHHHHHHHhhcCCchhhhccccchHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 999999999998887444332 21 113467777777776554 356776665554346677888888887
Q ss_pred hc
Q 002831 854 VN 855 (875)
Q Consensus 854 L~ 855 (875)
|-
T Consensus 718 lK 719 (793)
T KOG2180|consen 718 LK 719 (793)
T ss_pred hc
Confidence 75
No 8
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.53 E-value=35 Score=42.54 Aligned_cols=286 Identities=15% Similarity=0.047 Sum_probs=138.4
Q ss_pred CCcccccHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhh--hhcccchHhHHHhc
Q 002831 506 GRPVLQGLLAIDFLAKEVLGWAQAMPKFAADLVKYVQTFLERTYERCRTSYMEAVLE---KQSY--MLIGRHDIDKLLRL 580 (875)
Q Consensus 506 ~rPIlksa~~f~~li~~l~~ml~t~P~y~~~~~~li~~~L~~yye~c~~~y~~lv~~---~~s~--~w~~~~di~~lm~~ 580 (875)
..|||+.++.+.+.+.-+-.-+...-.-...|..++-.+|..+--+|++.| .++.. +... .-..+.-..+|++-
T Consensus 571 ~i~i~k~~~~l~q~~~~ve~~L~~v~n~~~~l~~~~~~~l~m~~~~~~~Y~-~~c~~a~~g~~~~~~~~~~~is~aWl~D 649 (982)
T KOG3691|consen 571 IIPIFKCHLPLLQSFHIVEDYLPIVANLAVDLYELSDYLLNMVCNHLSDYL-DICRAALRGIVQHVSEVKRKISVAWLKD 649 (982)
T ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcccCCCcchhhhhhHHHhcc
Confidence 588999999988887433222222222256677777777777788888777 45542 2211 11111122245542
Q ss_pred C---ccccCCCCCCCCCCCCCCccCchhhHhhHHHHhhcCCCCCccccccChhHHHHHHHHHHhHHHHHHHHHHhhhhhc
Q 002831 581 E---PASASLPNGQLDSVSSVNDAETPGVESELRELFLSLRPIRQENLIHDENKLILLASLSDSLEYVADSIERLGRATL 657 (875)
Q Consensus 581 ~---p~~~~l~~~~~~~~~~~~~~~~~E~E~~l~~~~~~~~~l~~~dli~d~~~l~~La~L~~Sl~Wla~~l~~L~~~~~ 657 (875)
+ +....+++|....-......+..|.|-.+ -.+.+.+..++++ ...|...+.+..|..|+..|++.|++...
T Consensus 650 ddisr~l~klpNw~~~s~~~~~~~~r~E~e~~l---q~~~r~~kE~e~l--i~nLgt~~q~~~s~~~il~~m~~lK~~a~ 724 (982)
T KOG3691|consen 650 DDISRQLKKLPNWKNPSLEGQNELCREEEESFL---QAGDRNIKESELL--ISNLGTDSQLSISVSDILNDMSDLKQLAN 724 (982)
T ss_pred chhHHHHHhccCCcccccccccchhhhhcchHh---HhhhcccchHhhh--hcccchhhhcccCHHHHHHHHHHHHHHHh
Confidence 2 11223555432111111111112233332 1234455444443 35677777888999999999998887521
Q ss_pred -cCCccccCCCCCCCCCCCC-----------cc-h---HHHHHHH-HHHHHHHH-HHHHHHHHHHHHHHHhhcc-c--cc
Q 002831 658 -RESNLVEESRKPHHNRSSS-----------AP-S---RDLASFA-DEYRKLAI-DCLKVLRVEMQLETIFHLQ-E--MT 716 (875)
Q Consensus 658 -~~s~~~~~~~~~~~~r~s~-----------~l-~---~~f~~~~-~~f~~La~-~~Ll~LrlEvR~~~iy~L~-~--l~ 716 (875)
+.+..-... +. ..-|++ ++ + .....+- +.|+...+ .+.-.=++--+|--+-|+. . -+
T Consensus 725 m~ES~~w~a~-r~-rs~~~~l~~~~ll~~n~~~~~~~~~dl~~l~dd~~~s~~ee~~~~fq~la~~cLLlLhlEVRv~Cf 802 (982)
T KOG3691|consen 725 MHESLEWFAD-RA-RSGFDFLPIDNLLGNNPALMKGYLTDLIELYDDFYKSAYEELADSFQRLAFDCLLLLHLEVRVQCF 802 (982)
T ss_pred hhhhHHHHHH-HH-HhhccccchhhhhcCCccccccccccchhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111000000 00 001111 11 1 1122111 12222333 2223334555666666664 1 12
Q ss_pred C--C--CccCCCCCCCCChHHHHHHHHHHHHHHhhccccchhhhhhhhccHHHHHHHHHHHhchhhhhhhHhhHHHH-Hh
Q 002831 717 S--R--DYLEDQDAEEPDDFIISLTSQITRRDEEMAPFIAEEKRNYIFGGICGIAANASIKALADMKNINLFGVQQI-CR 791 (875)
Q Consensus 717 ~--~--~y~~~~~~~epD~~I~~Ln~dL~~~de~ls~~L~~~k~~fIF~GL~~li~~~lI~~~~~I~~iN~nGvkkm-~r 791 (875)
+ + ....++ +......++++-..+.++-..++++=..=|-. ==.+=-..+|+.-.+-+..+=-+|.+.| ..
T Consensus 803 h~l~~~s~~~n~-~i~~~~~s~e~D~~V~aL~k~l~~~e~klk~~----L~e~k~~yIFeGL~hL~s~~LI~~a~~i~~l 877 (982)
T KOG3691|consen 803 HYLNPLSKLRNT-SIVNRDVSGEPDPSVVALNKDLSTTEEKLKAC----LNEWKRRYIFEGLGHLVSSILISGAQYIERL 877 (982)
T ss_pred hhcchhhccCCc-eeecccccCCCCHHHHHHHHHHHHHHHHHHhh----cCHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 2 1 122222 22222226667777776666665532111100 0012234567777777777777888888 56
Q ss_pred cHHHHHHHhhcCC
Q 002831 792 NSIALEQALAAIP 804 (875)
Q Consensus 792 NI~aLQQ~LknI~ 804 (875)
|=...+++|||+.
T Consensus 878 n~~~ikkMcRNv~ 890 (982)
T KOG3691|consen 878 NEGGIKKMCRNVS 890 (982)
T ss_pred hHHHHHHHHHHHH
Confidence 8889999999986
No 9
>PF12854 PPR_1: PPR repeat
Probab=52.64 E-value=16 Score=26.63 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=19.7
Q ss_pred HHHHHHHHhhCChHHHHHHHHh
Q 002831 153 QTMVECLCILGKVAAAGAIICQ 174 (875)
Q Consensus 153 ~~Lle~L~~LgkL~~A~~~i~q 174 (875)
-+||.++++-|+++.|.+++.+
T Consensus 11 ~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 11 NTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HHHHHHHHHCCCHHHHHHHHHh
Confidence 5799999999999999998753
No 10
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=44.18 E-value=7.1e+02 Score=31.15 Aligned_cols=133 Identities=11% Similarity=0.146 Sum_probs=104.6
Q ss_pred cCCCccCCCCCC----CCChHHHHHHHHHHHHHHhhccccchhhhhhhhccHHHHHHHHHHHhchhhh--hhhHhhHHHH
Q 002831 716 TSRDYLEDQDAE----EPDDFIISLTSQITRRDEEMAPFIAEEKRNYIFGGICGIAANASIKALADMK--NINLFGVQQI 789 (875)
Q Consensus 716 ~~~~y~~~~~~~----epD~~I~~Ln~dL~~~de~ls~~L~~~k~~fIF~GL~~li~~~lI~~~~~I~--~iN~nGvkkm 789 (875)
.+.+|.|..+.. .|.|.....-.-|...-+.+..+|...-..-...=||.=+-++++ .|++ .+|..|.-++
T Consensus 559 kk~Df~p~~~~~~~~~~~T~ac~~vv~~L~~~~~~~~~~l~~~nl~~f~~elg~~l~~~l~---~h~kk~~vs~~Gg~~l 635 (710)
T PF07393_consen 559 KKTDFKPKEDDLSLDQQPTPACQEVVEFLERHCSLLKGSLDGSNLDVFLQELGERLHRLLL---KHLKKFTVSSTGGLQL 635 (710)
T ss_pred CCCCCCCCccccccccCCCHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHH---HHHHhCccCchhHHHH
Confidence 446799854432 689999999999999999999999876555555555555555555 4555 4799999999
Q ss_pred HhcHHHHHHHhhcCCCCChHHHHhhhHHHHHHHHhcCCCHHHHHHHHHhcC-CCCCHHHHHHhhhh
Q 002831 790 CRNSIALEQALAAIPSIDSEAVRRRLDRVRTYYELLNMPFEALLAFVTEHE-NLFTTTEYASLLKV 854 (875)
Q Consensus 790 ~rNI~aLQQ~LknI~~~~e~~v~~~l~ra~~yyeL~~~~~e~ll~~i~e~~-~~Fs~~Eyk~ll~L 854 (875)
.+.|...|..++..... . |...|+.-+.-=.||..+|+.+-..+++.. ..|+.+|.+..+++
T Consensus 636 ~~Dl~~Y~~~~~~~~~~-~--v~~~F~~L~~l~nl~~v~~~~l~~~~~~~~~~~~~~~~i~~fi~~ 698 (710)
T PF07393_consen 636 IKDLNEYQDFIRSWGIP-S--VDEKFEALKELGNLFIVDPENLKELCREGQLGRFSPEEIYEFIQR 698 (710)
T ss_pred HHHHHHHHHHHHHcCCc-h--HHHHHHHHHHHHhheeecHHHHHHHHhhccccCCCHHHHHHHHHH
Confidence 99999999999988543 2 345788888888899999999999988865 68999999998865
No 11
>KOG2286 consensus Exocyst complex subunit SEC6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.03 E-value=7e+02 Score=31.06 Aligned_cols=175 Identities=11% Similarity=0.150 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhcccccCCCccCCCCCCCCChHHHHHHHHHHHHHHhhccccchhhh
Q 002831 681 DLASFADEYRKLAIDCL----KVLRVEMQLETIFHLQEMTSRDYLEDQDAEEPDDFIISLTSQITRRDEEMAPFIAEEKR 756 (875)
Q Consensus 681 ~f~~~~~~f~~La~~~L----l~LrlEvR~~~iy~L~~l~~~~y~~~~~~~epD~~I~~Ln~dL~~~de~ls~~L~~~k~ 756 (875)
.+..++..|.+++...- --+++|+++ ++..++...|... .-.+--|..|---+.-+-+.|.++ ..
T Consensus 466 ~~~~~l~~~~~i~~~~~~~l~e~~~~d~~~----~~~~lf~~~W~~g---~~~~~Iv~T~~dy~~D~~~~~~~~----f~ 534 (667)
T KOG2286|consen 466 TLKGLLDGFIEIAKHGVSGLLEEIFLDLQP----LLNKLFTKEWCAG---SVTENIVATLDDYLPDFKELMGEY----FV 534 (667)
T ss_pred hhHHHhHHHHHHHHhHHHHHHHHHHHHHHH----HHHHHhhhhhhch---hhHHHHHHHHHHHHHHHHHHhhhH----HH
Confidence 35556666666665433 334566665 4567777778754 344555556666666665555554 67
Q ss_pred hhhhccHHHHHHHHHHHhchhhhhhhHhhHHHHHhcHHHHHHHhhcCCCCChHHHHhhhHHHHHHHHhcCCCHHHHH---
Q 002831 757 NYIFGGICGIAANASIKALADMKNINLFGVQQICRNSIALEQALAAIPSIDSEAVRRRLDRVRTYYELLNMPFEALL--- 833 (875)
Q Consensus 757 ~fIF~GL~~li~~~lI~~~~~I~~iN~nGvkkm~rNI~aLQQ~LknI~~~~e~~v~~~l~ra~~yyeL~~~~~e~ll--- 833 (875)
+||=.-..+++=.++.+-.+.=-.++ +++.+|.+|.-.+++-++-+.++-+ ..-.-+.-.+.++.+. +++.+.
T Consensus 535 ~fi~e~~~~~v~~Yl~~l~~kr~~~~-~~~~~i~~d~~~~~~~f~~~~~~~~-~~~~~~~~l~el~~~~--d~d~~~~~~ 610 (667)
T KOG2286|consen 535 RFIEEASLELVIEYLRALSKKRASIQ-ELIEKIKSDAETLYHFFRKYGSDVD-TLISTISTLAELISLQ--DPDLIKLEV 610 (667)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHhhHHHHHHHHHHhCcchh-hhhhhhHHHHHHHhcC--ChHHHHHHH
Confidence 77777777777666665554333466 9999999999999999999987211 1111222233333222 555543
Q ss_pred HHHHhcCCCCCHHHHHHhhhhccCCCCCchHHHHHHHhhh
Q 002831 834 AFVTEHENLFTTTEYASLLKVNVPGREIPSDALDRVSEIL 873 (875)
Q Consensus 834 ~~i~e~~~~Fs~~Eyk~ll~L~~~~~~~~~~~~~rl~~il 873 (875)
..+.+.-+.+..+-+.+||.+- ...+.+-.|+|-+++
T Consensus 611 ~~l~~~YpD~~~~~l~~il~~R---~dls~~~~k~i~~~~ 647 (667)
T KOG2286|consen 611 STLLECYPDIPKDHLEAILKIR---GDLSRSEKKKIVDIL 647 (667)
T ss_pred HHHHHHCCCCcHHHHHHHHHHh---cCCCHHHHHHHHHHH
Confidence 3445556677777777766432 122334455554443
No 12
>KOG2163 consensus Centromere/kinetochore protein zw10 involved in mitotic chromosome segregation [Cell cycle control, cell division, chromosome partitioning]
Probab=31.24 E-value=1.1e+03 Score=29.07 Aligned_cols=221 Identities=13% Similarity=0.183 Sum_probs=135.0
Q ss_pred HhhcCCCCCccccccChhHHHHHHHHHHh-HHHHHHHHHHhhhhhccCCccccCCCCCCCCCCCCcchHHHHHHHHHHHH
Q 002831 613 LFLSLRPIRQENLIHDENKLILLASLSDS-LEYVADSIERLGRATLRESNLVEESRKPHHNRSSSAPSRDLASFADEYRK 691 (875)
Q Consensus 613 ~~~~~~~l~~~dli~d~~~l~~La~L~~S-l~Wla~~l~~L~~~~~~~s~~~~~~~~~~~~r~s~~l~~~f~~~~~~f~~ 691 (875)
++....|....+++ .++..+|.++++ ..+|+.|+ +.|... ....|.+++-+|+.
T Consensus 476 ly~~vVP~khrell---~siPq~AaifhNNCmyi~h~~--~~h~f~--------------------g~~~ladlaprlr~ 530 (719)
T KOG2163|consen 476 LYVIVVPRKHRELL---SSIPQMAAIFHNNCMYISHCI--MTHSFL--------------------GEPLLADLAPRLRT 530 (719)
T ss_pred HHHHHhhHHHHHHH---HhcchHHHHHhcccHHHHHHH--Hhhhcc--------------------cchHHHHHHHHHHH
Confidence 44455566666666 456666666554 67777776 333321 13459999999999
Q ss_pred HHHHHHHH-HHHHHHHHHHhhcccccCCCccC-CCCCCCCChHHHHHHHHHHHHHHhhccccchhhhhhhhccHHHHHHH
Q 002831 692 LAIDCLKV-LRVEMQLETIFHLQEMTSRDYLE-DQDAEEPDDFIISLTSQITRRDEEMAPFIAEEKRNYIFGGICGIAAN 769 (875)
Q Consensus 692 La~~~Ll~-LrlEvR~~~iy~L~~l~~~~y~~-~~~~~epD~~I~~Ln~dL~~~de~ls~~L~~~k~~fIF~GL~~li~~ 769 (875)
++..|+.. +|+-.+ .-.-||..+..=.+.. +.-..-||-.|-.--..|..+......-||+.-++-+|..|=...=.
T Consensus 531 ~a~ecf~kQv~~q~s-eL~e~l~sa~~Fen~~~ee~~ssa~klVrQcL~qLkll~~vw~~vLpe~vYck~mc~Llnt~~~ 609 (719)
T KOG2163|consen 531 VAAECFEKQVTRQRS-ELTEYLESASIFENLPAEEMSSSADKLVRQCLLQLKLLAKVWREVLPEVVYCKVMCSLLNTLLD 609 (719)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHhhhhccCcHHhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 99999754 232111 1112333222211111 12245677778888888899999999999999888776554443333
Q ss_pred HHHHhchhhhhhhHhhHHHHHhcHHHHHHHhhcCCCCChH----HHH-hhhHHHHHHHHhcCCCHHHHHHHHHhcC----
Q 002831 770 ASIKALADMKNINLFGVQQICRNSIALEQALAAIPSIDSE----AVR-RRLDRVRTYYELLNMPFEALLAFVTEHE---- 840 (875)
Q Consensus 770 ~lI~~~~~I~~iN~nGvkkm~rNI~aLQQ~LknI~~~~e~----~v~-~~l~ra~~yyeL~~~~~e~ll~~i~e~~---- 840 (875)
-+|.-.-...-|..+-.-.|..=|-.+=|+..|+...+++ .|- .+.-+..+--.|+.++-.+|-..--.+.
T Consensus 610 elir~V~tl~Disa~da~eL~dLik~vL~~~p~vfa~~~e~~et~v~v~~w~pl~el~~mL~asLmeIt~rW~dgkGpla 689 (719)
T KOG2163|consen 610 ELIRHVVTLSDISANDANELADLIKRVLEVVPNVFAYKEETKETDVCVREWFPLNELVFMLGASLMEITHRWFDGKGPLA 689 (719)
T ss_pred HHHHHHhhHHhhhhhhhHHHHHHHHHHHHhhhhhhcChhhccCccccHHHhccHHHHHHHhCchHhHHHHHHhcCCccHH
Confidence 4444444455677777777777777788888888766543 110 0111122222355666566655544442
Q ss_pred CCCCHHHHHHhhhhccCCC
Q 002831 841 NLFTTTEYASLLKVNVPGR 859 (875)
Q Consensus 841 ~~Fs~~Eyk~ll~L~~~~~ 859 (875)
..||-+|.+.+++-.|...
T Consensus 690 a~fsrsEVk~lIkALFqDs 708 (719)
T KOG2163|consen 690 AHFSRSEVKGLIKALFQDS 708 (719)
T ss_pred hhccHHHHHHHHHHHhhch
Confidence 4799999999999998754
No 13
>PF09693 Phage_XkdX: Phage uncharacterised protein (Phage_XkdX); InterPro: IPR010022 This entry is represented by Bacteriophage 69, Orf86. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry identifies a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=31.20 E-value=75 Score=24.41 Aligned_cols=36 Identities=22% Similarity=0.408 Sum_probs=30.4
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHhcCCCCCHHHHHHhh
Q 002831 815 LDRVRTYYELLNMPFEALLAFVTEHENLFTTTEYASLL 852 (875)
Q Consensus 815 l~ra~~yyeL~~~~~e~ll~~i~e~~~~Fs~~Eyk~ll 852 (875)
|+..+.||++=.-+++++-..+.-+ ..|.+||+.|.
T Consensus 1 f~~iK~~Y~~g~~t~~~v~~~V~~g--~IT~eey~eIT 36 (40)
T PF09693_consen 1 FEDIKRYYDWGLYTKEDVKNFVEAG--WITKEEYKEIT 36 (40)
T ss_pred ChHHHHHHHcCCCCHHHHHHHhhcC--eECHHHHHHhh
Confidence 4678999999888999998888764 79999999874
No 14
>cd05134 RasGAP_RASA3 RASA3 (or GAP1_IP4BP) is a member of the GAP1 family and has been shown to specifically bind 1,3,4,5-tetrakisphosphate (IP4). Thus, RASA3 may function as an IP4 receptor. The members of GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. Purified RASA3 stimulates GAP activity on Ras with about a five-fold lower potency than p120RasGAP, but shows no GAP-stimulating activity at all against Rac or Rab3A.
Probab=27.79 E-value=2.1e+02 Score=32.18 Aligned_cols=44 Identities=9% Similarity=0.010 Sum_probs=38.8
Q ss_pred CcchhHHHHHHHHHhhccccHHHHHHHHHHHHhcCCCccccccc
Q 002831 451 GNDGLLAFVENFVKDHLLPTMFVDYRKGVQQAISSPAAFRPRAH 494 (875)
Q Consensus 451 ~~~~l~~Fld~Fv~~vFLPql~~~~~~~~~~~~~~~daf~~~~~ 494 (875)
+++.++.-++.|++.+=.+.|++++...++..+.....|-+||.
T Consensus 75 gNSlaTK~m~~y~k~~G~~YL~~tL~pvI~~i~~~~~~~EvDP~ 118 (310)
T cd05134 75 GNSLTSKCIDETMKLAGMHYLQVTLKPIIDEICQEHKPCEIDPV 118 (310)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccCcc
Confidence 45678889999999999999999999999999998888877764
No 15
>TIGR01669 phage_XkdX phage uncharacterized protein, XkdX family. This model represents a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=27.56 E-value=1.1e+02 Score=24.27 Aligned_cols=37 Identities=27% Similarity=0.450 Sum_probs=32.0
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHhcCCCCCHHHHHHhh
Q 002831 814 RLDRVRTYYELLNMPFEALLAFVTEHENLFTTTEYASLL 852 (875)
Q Consensus 814 ~l~ra~~yyeL~~~~~e~ll~~i~e~~~~Fs~~Eyk~ll 852 (875)
.|+..++||++=..+++++-.++.-+ .-|.+||+.|-
T Consensus 5 ~~e~iK~~Y~~g~~t~e~v~~~V~~~--~IT~eey~eIT 41 (45)
T TIGR01669 5 SFEKVKTYYLWGYYSNEDVNKFVEKK--LITREQYKVIT 41 (45)
T ss_pred CHHHHHHHHHcCCCCHHHHHHHhhcC--ccCHHHHHHHh
Confidence 58899999999999999998888753 68999999874
No 16
>PHA02503 putative transcription regulator; Provisional
Probab=25.17 E-value=53 Score=26.26 Aligned_cols=20 Identities=20% Similarity=0.685 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHhhccccHHH
Q 002831 454 GLLAFVENFVKDHLLPTMFV 473 (875)
Q Consensus 454 ~l~~Fld~Fv~~vFLPql~~ 473 (875)
.|..|-.+|++|..+|||.+
T Consensus 25 ~l~~~s~~fl~~slipql~e 44 (57)
T PHA02503 25 KLSVYSKDFLQNSLIPQLYE 44 (57)
T ss_pred HHHHHHHHHHHhhhhHHHHH
Confidence 36678889999999999986
No 17
>PF11989 Dsl1_C: Retrograde transport protein Dsl1 C terminal; InterPro: IPR021876 Dsl1 is a peripheral membrane protein required for transport between the Golgi and the endoplasmic reticulum []. It is localised to the ER membrane, and in vitro it specifically binds to coatomer, the major component of the protein coat of COPI vesicles []. Binding sites for coatomer are found on a disorganised region between the C and N termini of Dsl1 []. The C-terminal domain is involved in binding to the Sec39 subunit of the Dsl1p complex []. The N-terminal complexes with another subunit of the Dsl1p complex called Tip20 which forms heterodimers by pairing the N termini of each protein []. ; PDB: 3K8P_C.
Probab=22.87 E-value=7.1e+02 Score=27.76 Aligned_cols=125 Identities=16% Similarity=0.162 Sum_probs=62.3
Q ss_pred HHHhhccccchhhhhhhhccHHHHHHHHHHHhchhhhhhhHhhH---HHHHhcHHHHHHHhhcCCCCChHH-HHhhhHHH
Q 002831 743 RDEEMAPFIAEEKRNYIFGGICGIAANASIKALADMKNINLFGV---QQICRNSIALEQALAAIPSIDSEA-VRRRLDRV 818 (875)
Q Consensus 743 ~de~ls~~L~~~k~~fIF~GL~~li~~~lI~~~~~I~~iN~nGv---kkm~rNI~aLQQ~LknI~~~~e~~-v~~~l~ra 818 (875)
+.+.+.+..++...++|-.=+.-+++..+|+..-.+.-|.+.-. -.+|+++.. -..|..-+..+ ......|-
T Consensus 155 ~~~~~~~~~~~~~~~~i~~li~fv~n~~ii~~I~~~~dISE~qS~~Ls~li~~l~~----~t~i~~l~~~~~y~~s~~Kf 230 (291)
T PF11989_consen 155 ILEPLQQINHSEFKQFIGSLINFVYNDWIINSILSLDDISEKQSENLSELIDLLNN----NTEIPSLNITPKYVESWNKF 230 (291)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHHTTHHHHHHTSS---HHHHHHHHHHHHHHHH----HT--GGGTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHcc----ccchhhccccchHHHHHHHH
Confidence 33445555556667777665555566666665555555555444 444665543 12222111100 00112222
Q ss_pred HHHHHhcCCCHHHHHHHHHhcC-CCCCHHHHHHhhhhccCCCCCchHHHHHHHh
Q 002831 819 RTYYELLNMPFEALLAFVTEHE-NLFTTTEYASLLKVNVPGREIPSDALDRVSE 871 (875)
Q Consensus 819 ~~yyeL~~~~~e~ll~~i~e~~-~~Fs~~Eyk~ll~L~~~~~~~~~~~~~rl~~ 871 (875)
...=.++...=.+|.+..-+|. -.|+-+|+..+++++|-..+.-.+++..|.|
T Consensus 231 ~~v~~lL~~hLkDIm~~Fy~Gel~~fsTdElI~lIkslFadS~lR~n~I~eI~e 284 (291)
T PF11989_consen 231 NNVGFLLNNHLKDIMEMFYQGELYDFSTDELIQLIKSLFADSPLRDNYIDEIRE 284 (291)
T ss_dssp HHHHHHHT--HHHHHHHHHTTGGGGS-HHHHHHHHHHHS---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCchhcccHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 2333467778899999999876 6799999999999999755544444444444
No 18
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=22.37 E-value=1.3e+03 Score=29.23 Aligned_cols=150 Identities=14% Similarity=0.228 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC------CCccCCCCCCCCChHHHHHHHHHHHHHHhhccccch
Q 002831 680 RDLASFADEYRKLAIDCLKVLRVEMQLETIFHLQEMTS------RDYLEDQDAEEPDDFIISLTSQITRRDEEMAPFIAE 753 (875)
Q Consensus 680 ~~f~~~~~~f~~La~~~Ll~LrlEvR~~~iy~L~~l~~------~~y~~~~~~~epD~~I~~Ln~dL~~~de~ls~~L~~ 753 (875)
..+..+.+..+++...+++ .++.-++.-+-.+..-.. ....++.=+.-|-.+|...---|..+=..|.++...
T Consensus 568 ~~~~~l~~~~~~~v~d~l~-~~i~~~L~~vp~~~~W~~~~~~~~~~~~LP~FS~~P~eyIT~IGeyLLtLPq~LEp~~~~ 646 (766)
T PF10191_consen 568 AAVSRLNQQAQDLVFDVLF-SPIRQQLKSVPSLPSWSSAGVGETSTLDLPSFSLSPQEYITQIGEYLLTLPQQLEPFAES 646 (766)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCcCcccccCCccccccCCCCccccChHHHHHHHHHHHHhhHHhhhhhhcC
Confidence 5677778888888887773 455555555544432111 112233335678889999999998888888877776
Q ss_pred h-----------hhhhhhcc-----------------HHHHHHHHHHHhchhhhhhhHhhHHHHHhcHHHHHHHhhcCCC
Q 002831 754 E-----------KRNYIFGG-----------------ICGIAANASIKALADMKNINLFGVQQICRNSIALEQALAAIPS 805 (875)
Q Consensus 754 ~-----------k~~fIF~G-----------------L~~li~~~lI~~~~~I~~iN~nGvkkm~rNI~aLQQ~LknI~~ 805 (875)
. +..|--++ ++.-.-..++.....|..++..|++++.=+|--|-.-|..+-.
T Consensus 647 ~~~al~~Al~~~~~~~~~~~~~~~~~~~~~~~~wl~~va~~~~~~~~~~i~~i~~l~~~~~~QL~~Di~Yl~nVl~aLg~ 726 (766)
T PF10191_consen 647 DNSALAFALHAGKLPYPPESDEEAEEADDFADEWLGKVARATCALYLEQILEIPELSESGAKQLATDIDYLSNVLSALGL 726 (766)
T ss_pred cchHHHHHHHhcCCCCCCCcccCCcchhhhHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5 11121122 3444555688888999999999999999999999999998875
Q ss_pred CChHHHHhhhHHHHHHHHhcCCCHHHHHHHHH
Q 002831 806 IDSEAVRRRLDRVRTYYELLNMPFEALLAFVT 837 (875)
Q Consensus 806 ~~e~~v~~~l~ra~~yyeL~~~~~e~ll~~i~ 837 (875)
.+.. -=.++..|+..++|+..+.++
T Consensus 727 ~~~~-------~L~~~~~ll~~~~~~~~~~~~ 751 (766)
T PF10191_consen 727 SPPP-------NLQQLVTLLKAPPDQYAQVAK 751 (766)
T ss_pred CCCH-------HHHHHHHHHcCCHHHHHHHHh
Confidence 5432 124566677888888888777
No 19
>PF13258 DUF4049: Domain of unknown function (DUF4049)
Probab=20.81 E-value=41 Score=35.76 Aligned_cols=17 Identities=24% Similarity=0.559 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHhcCCC
Q 002831 30 FYKVLEDLHAHLYNRGE 46 (875)
Q Consensus 30 fd~liEELh~hlYlKs~ 46 (875)
.|++++|||.|+++|+.
T Consensus 67 rdmiln~lh~hvflk~d 83 (318)
T PF13258_consen 67 RDMILNELHQHVFLKDD 83 (318)
T ss_pred hHHHHHhhhheEEecCC
Confidence 47899999999999985
Done!