Query 002831
Match_columns 875
No_of_seqs 162 out of 191
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 03:20:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002831.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002831hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3n1e_A Vacuolar protein sortin 95.8 0.065 2.2E-06 51.2 11.2 124 678-808 6-131 (141)
2 2fji_1 Exocyst complex compone 89.6 3 0.0001 46.5 13.6 168 679-854 173-350 (399)
3 2a2f_X Exocyst complex compone 88.0 1.1 3.8E-05 48.8 8.3 89 714-803 202-292 (325)
4 3hr0_A COG4; conserved oligome 83.6 5.1 0.00018 42.2 10.6 217 630-855 17-250 (263)
5 3fhn_A Protein transport prote 82.3 4.7 0.00016 48.0 10.6 143 680-829 502-658 (706)
6 3ns4_A Vacuolar protein sortin 39.5 1.1E+02 0.0038 31.9 9.3 95 761-855 29-159 (271)
7 3k8p_C DSL1, KLLA0C02695P; int 36.9 84 0.0029 34.1 8.2 91 773-872 254-351 (357)
8 1wer_A P120GAP; GTPase activat 23.9 2.5E+02 0.0086 30.0 9.5 44 451-494 77-120 (334)
9 3swh_A MUNC13-1, protein UNC-1 14.8 2.7E+02 0.0092 30.1 7.0 94 455-560 7-110 (341)
10 2dwf_A Pulmonary surfactant-as 14.5 79 0.0027 22.2 1.7 13 434-446 6-18 (34)
No 1
>3n1e_A Vacuolar protein sorting-associated protein 54; spinal muscular atrophy, vesicle trafficking, golgi apparatu tethering complex, GARP.; 1.70A {Mus musculus} PDB: 3n1b_A
Probab=95.80 E-value=0.065 Score=51.23 Aligned_cols=124 Identities=19% Similarity=0.174 Sum_probs=98.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCccCCCCCCCCChHHHHHHHHHHHHHHhhccccchhhhh
Q 002831 678 PSRDLASFADEYRKLAIDCLKVLRVEMQLETIFHLQEMTSRDYLEDQDAEEPDDFIISLTSQITRRDEEMAPFIAEEKRN 757 (875)
Q Consensus 678 l~~~f~~~~~~f~~La~~~Ll~LrlEvR~~~iy~L~~l~~~~y~~~~~~~epD~~I~~Ln~dL~~~de~ls~~L~~~k~~ 757 (875)
+...||.+.+.|++=...+.--|=-=|--+..-++. +|.. .+..|+|+.-.|.+++..+.+.|+..||+..-.
T Consensus 6 lL~efDkv~rdy~eH~~eI~~KLv~Im~~r~~~~l~-----~Wd~--k~pvpS~~m~tl~Ke~~kLH~~Ls~~LP~~~v~ 78 (141)
T 3n1e_A 6 MLRHFDHITKDYHDHIAEISAKLVAIMDSLFDKLLS-----KYEV--KAPVPSPCFRNICKQMTKMHEAIFDLLPEEQTQ 78 (141)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHT-----TCCC--CSSSSCHHHHHHHHHHHHHHHHHTTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----Hhcc--CCCCCCHHHHHHHHHHHHHHHHHHhhCCHHHHH
Confidence 346788888888765554443332222233333332 5743 455899999999999999999999999999999
Q ss_pred hhhccHHHHHHHHHHHhchhhhhhhHhhHHH--HHhcHHHHHHHhhcCCCCCh
Q 002831 758 YIFGGICGIAANASIKALADMKNINLFGVQQ--ICRNSIALEQALAAIPSIDS 808 (875)
Q Consensus 758 fIF~GL~~li~~~lI~~~~~I~~iN~nGvkk--m~rNI~aLQQ~LknI~~~~e 808 (875)
.||.-+=.-...-|-.....+..-|+.|-++ |.+.+.-.+++|++|-.-++
T Consensus 79 ~Im~~Vf~~fk~~l~~~~~~~~i~~~~G~q~g~v~~Dv~ff~~~L~~L~g~~d 131 (141)
T 3n1e_A 79 MLFLRINASYKLHLKKQLSHLNVINDGGPQNGLVTADVAFYTGNLQALKGLKD 131 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCSSSSHHHHHHHHHHHHHHHHHHTSTTCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHHhcccCCCCc
Confidence 9999999888889999999999999999987 89999999999999977654
No 2
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=89.58 E-value=3 Score=46.55 Aligned_cols=168 Identities=11% Similarity=0.044 Sum_probs=113.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCccCCCCCCCCChHHHHHHHHHHHHHHhhccccchhhhhh
Q 002831 679 SRDLASFADEYRKLAIDCLKVLRVEMQLETIFHLQEMTSRDYLEDQDAEEPDDFIISLTSQITRRDEEMAPFIAEEKRNY 758 (875)
Q Consensus 679 ~~~f~~~~~~f~~La~~~Ll~LrlEvR~~~iy~L~~l~~~~y~~~~~~~epD~~I~~Ln~dL~~~de~ls~~L~~~k~~f 758 (875)
...|+.+.+.|.+++..|+..|-=.|=..+=-++..++...|..+. .+..+...+..+=..+..+|.+.-+..
T Consensus 173 ~~~l~~~~~~f~~l~~~~~~~L~~~if~dl~p~~~~lft~~W~~~~-------~v~~i~~ti~dy~~d~~~~L~~~~~~~ 245 (399)
T 2fji_1 173 TNHLEGTLDGFAEVAQCSSLGLITLMFDDLRKPYQEIFSKTWYMGS-------QAQQIADTLDEYLLDIKPQMNSVLFVN 245 (399)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHTTHHHHTTTTSGGGTTCC-------HHHHHHHHHHHHHHHHGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhcCCc-------HHHHHHHHHHHHHHHHHHHhChHHHHH
Confidence 4578999999999999999999544444332344555666775321 677777777777777888888877776
Q ss_pred hhccHHHHHHHHHHHhchhhhhhh---HhhHHHHHhcHHHHHHHhhcCCCCChH---HHHhhhHHHHHHHHhcCCCH-HH
Q 002831 759 IFGGICGIAANASIKALADMKNIN---LFGVQQICRNSIALEQALAAIPSIDSE---AVRRRLDRVRTYYELLNMPF-EA 831 (875)
Q Consensus 759 IF~GL~~li~~~lI~~~~~I~~iN---~nGvkkm~rNI~aLQQ~LknI~~~~e~---~v~~~l~ra~~yyeL~~~~~-e~ 831 (875)
+..-+-..+-.-.+.++..=.++| ..|..||.+++-+|.+-+..+....+. -+.-.+.+-...=+ +..++ +.
T Consensus 246 l~~~~~~~~v~~Yl~~l~~~~~~~~~~~~~~~~l~~D~~~l~~~f~~~~~~~~~~~~~v~~~~~~l~~l~~-L~~d~~~~ 324 (399)
T 2fji_1 246 FIDNVIGETIIKFLTALSFEHSFKNKNNKFLEAMKRDFEIFYQLFVKVLDGNESKDTLITQNFTVMEFFMD-LSCEPIDS 324 (399)
T ss_dssp HHHHHHHHHHHHHHHGGGGCCCCCCGGGHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHH-HHHSCGGG
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHH-hcCCcHHH
Confidence 666655555444555554422577 899999999999999999999875431 02234555555556 55455 66
Q ss_pred HHHHH---HhcCCCCCHHHHHHhhhh
Q 002831 832 LLAFV---TEHENLFTTTEYASLLKV 854 (875)
Q Consensus 832 ll~~i---~e~~~~Fs~~Eyk~ll~L 854 (875)
+...+ ...-+.++.++++++|.+
T Consensus 325 i~~~~~~l~~~ypD~~~~~V~aiL~~ 350 (399)
T 2fji_1 325 ILDIWQKYLEVYWDSRIDLLVGILKC 350 (399)
T ss_dssp HHHHHHHHHTTCTTCCSHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHh
Confidence 66555 333466888888888853
No 3
>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster}
Probab=87.98 E-value=1.1 Score=48.75 Aligned_cols=89 Identities=17% Similarity=0.118 Sum_probs=62.8
Q ss_pred cccCCCccCCCCCCCCChHHHHHHHHHHHHHHhhccccchhhhhhhhccHHHHHHHHHHHhc--hhhhhhhHhhHHHHHh
Q 002831 714 EMTSRDYLEDQDAEEPDDFIISLTSQITRRDEEMAPFIAEEKRNYIFGGICGIAANASIKAL--ADMKNINLFGVQQICR 791 (875)
Q Consensus 714 ~l~~~~y~~~~~~~epD~~I~~Ln~dL~~~de~ls~~L~~~k~~fIF~GL~~li~~~lI~~~--~~I~~iN~nGvkkm~r 791 (875)
.+..=+|.+...+++|+.+|.+|..-|..+=.. -..||+.-+..+.-|-..-|++.++.-. ..+|+||.+||+.+-.
T Consensus 202 ~la~yDW~~~~~~~~ps~yi~dli~fL~~~f~s-l~~LP~~v~~~~~~~a~~his~~l~~~Ll~~~vk~in~~av~~~~~ 280 (325)
T 2a2f_X 202 ELSAYDWLLVEPPGIASAFITDMISYLKSTFDS-FAFKLPHIAQAACRRTFEHIAEKIYSIMYDEDVKQISTGALTQINL 280 (325)
T ss_dssp TTCCTTCC----CCSCCHHHHHHHHHHHHHHHT-TTTTSHHHHHHHHHHHHHHHHHHHHHHHTC------CCTTHHHHHH
T ss_pred HhcccCCCCCCCCCCccHHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHHHHHHhcCcchhhcCHHHHHHHHH
Confidence 344447999999999999999999999998885 5578887666666665555555555554 4789999999999999
Q ss_pred cHHHHHHHhhcC
Q 002831 792 NSIALEQALAAI 803 (875)
Q Consensus 792 NI~aLQQ~LknI 803 (875)
+|-.|.+-.++-
T Consensus 281 Dv~~lE~fa~~~ 292 (325)
T 2a2f_X 281 DLMQCEFFAASE 292 (325)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHhC
Confidence 999999998773
No 4
>3hr0_A COG4; conserved oligomeric golgi complex, intracellular trafficking, vesicle tethering, multisubunit tethering complex, exocyst; 1.90A {Homo sapiens}
Probab=83.61 E-value=5.1 Score=42.16 Aligned_cols=217 Identities=14% Similarity=0.190 Sum_probs=136.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHhhhhhccCCccccCCCCCCCCCCCC-------cchHHHHHHHHHHHHHHHHHHHHHHH
Q 002831 630 NKLILLASLSDSLEYVADSIERLGRATLRESNLVEESRKPHHNRSSS-------APSRDLASFADEYRKLAIDCLKVLRV 702 (875)
Q Consensus 630 ~~l~~La~L~~Sl~Wla~~l~~L~~~~~~~s~~~~~~~~~~~~r~s~-------~l~~~f~~~~~~f~~La~~~Ll~Lrl 702 (875)
.+..+.+.+.++++.-.+-+.+|.+.+...-...=+ ...... .....|.++...|++|....+-.|.=
T Consensus 17 ~~~~~Flv~LNnld~s~eyi~rL~~~l~~~l~~~Fp-----~~~d~~~~~~kv~~~l~~l~~~~~k~~~ll~~gi~~Lf~ 91 (263)
T 3hr0_A 17 EAKMSFLVTLNNVEVCSENISTLKKTLESDCTKLFS-----QGIGGEQAQAKFDSCLSDLAAVSNKFRDLLQEGLTELNS 91 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHhheeccHHHHHHHHHHHHHHHHHHHHHhCC-----CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666777777777777776654221000000 000000 12356777888888888888877752
Q ss_pred -HHHHHHHhhcccccCCCccCCCC----CCCCChHHHHHHHHHHHHHHhhccccchhhhhhhhccHHHHHHHHHHHhchh
Q 002831 703 -EMQLETIFHLQEMTSRDYLEDQD----AEEPDDFIISLTSQITRRDEEMAPFIAEEKRNYIFGGICGIAANASIKALAD 777 (875)
Q Consensus 703 -EvR~~~iy~L~~l~~~~y~~~~~----~~epD~~I~~Ln~dL~~~de~ls~~L~~~k~~fIF~GL~~li~~~lI~~~~~ 777 (875)
=++-|.-=.|.++...+|.++.+ ...-||++..+...+..+=.-++..|.+.-..-+...+...+++.+=+....
T Consensus 92 ~~ikprLr~~l~~f~~~~y~l~eee~~~~e~~d~~~~~F~~~w~~ll~p~k~~Lt~~~y~~Ll~~~~~~la~~lE~~i~~ 171 (263)
T 3hr0_A 92 TAIKPQVQPWINSFFSVSHNIEEEEFNDYEANDPWVQQFILNLEQQMAEFKASLSPVIYDSLTGLMTSLVAVELEKVVLK 171 (263)
T ss_dssp HHTHHHHHHHHHGGGGSCBSCCHHHHHHHHHSCCSHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhHHHHHHHHHHHhcccccCCHhHHhhhhcccHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23222221224555556766422 1122567777766666666666667777766666666666666555444433
Q ss_pred hhhhhHhhHHHHHhcHHHHHHHhhcCCCCChHHHHhhhHHHHHHHHhcCC-CHHHHHHHHHhc-C---CCCCHHHHHHhh
Q 002831 778 MKNINLFGVQQICRNSIALEQALAAIPSIDSEAVRRRLDRVRTYYELLNM-PFEALLAFVTEH-E---NLFTTTEYASLL 852 (875)
Q Consensus 778 I~~iN~nGvkkm~rNI~aLQQ~LknI~~~~e~~v~~~l~ra~~yyeL~~~-~~e~ll~~i~e~-~---~~Fs~~Eyk~ll 852 (875)
+++|..|.-|+=|.+-.|.-.+++++.-. +.-.|.|..+--.++++ .++++.++..+. + -..|.+|.+.++
T Consensus 172 -~~fn~lGal~LdrDvr~li~~~~~~~~~~---lRekF~RL~QI~~lLnle~~eev~d~~~~~~~~~~W~Ls~~E~r~il 247 (263)
T 3hr0_A 172 -STFNRLGGLQFDKELRSLIAYLTTVTTWT---IRDKFARLSQMATILNLERVTEILDYWGPNSGPLTWRLTPAEVRQVL 247 (263)
T ss_dssp -CCBCHHHHHHHHHHHHHHHHHHHTTSCTT---HHHHTHHHHHHHHHHTCSSGGGGGGTSGGGGTTCCCCSCHHHHHHHH
T ss_pred -CCcCchhHHHHHHHHHHHHHHHHhccchh---hhHHHHHHHHHHHHHcCCChHHHHHHhcccCCCccccCCHHHHHHHH
Confidence 67999999999999999999998876543 34579999998888887 466666654332 1 379999999998
Q ss_pred hhc
Q 002831 853 KVN 855 (875)
Q Consensus 853 ~L~ 855 (875)
.|=
T Consensus 248 ~lR 250 (263)
T 3hr0_A 248 ALR 250 (263)
T ss_dssp TTB
T ss_pred Hhh
Confidence 764
No 5
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=82.27 E-value=4.7 Score=48.04 Aligned_cols=143 Identities=10% Similarity=0.146 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHH-HHH----HHHHHHHHHHHhhcccccCCCccCCCCC--------CCCChHHHHHHHHHHHHHHh
Q 002831 680 RDLASFADEYRKLAID-CLK----VLRVEMQLETIFHLQEMTSRDYLEDQDA--------EEPDDFIISLTSQITRRDEE 746 (875)
Q Consensus 680 ~~f~~~~~~f~~La~~-~Ll----~LrlEvR~~~iy~L~~l~~~~y~~~~~~--------~epD~~I~~Ln~dL~~~de~ 746 (875)
.-||.++..|+.|..+ ++- .+.-|++-.+=-|.. ...|....++ ..|.+.+...-+-|...=..
T Consensus 502 SIFDetIs~Y~~L~~~~~~~~Iv~~v~~eik~~lK~Y~k---~s~W~s~~~~~~~~~~~~lspSaEL~~~L~~L~~~L~~ 578 (706)
T 3fhn_A 502 SLFQNVENDYEKAMSTDMQNSIVHRIQKLLKETLRNYFK---ISTWSTLEMSVDENIGPSSVPSAELVNSINVLRRLINK 578 (706)
T ss_dssp CTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTHHHHH---CCGGGTCCCC------CCCCCCGGGHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---cccCcccCCCCcccccccCCCCHHHHHHHHHHHHHHHH
Confidence 3599999999998887 543 444444433333332 1235321111 22344444444455555556
Q ss_pred hccc-cchhhhhhhhccHHHHHHHHHHHhchhhhhhhHhhHHHHHhcHHHHHHHhhcCCCCChHHHHhhhHHHHHHHHhc
Q 002831 747 MAPF-IAEEKRNYIFGGICGIAANASIKALADMKNINLFGVQQICRNSIALEQALAAIPSIDSEAVRRRLDRVRTYYELL 825 (875)
Q Consensus 747 ls~~-L~~~k~~fIF~GL~~li~~~lI~~~~~I~~iN~nGvkkm~rNI~aLQQ~LknI~~~~e~~v~~~l~ra~~yyeL~ 825 (875)
|... |+..-..-|+..+..-++..|..+.-.-.+.|.+|+.+++..+-+|-..+. +..... +..|.+.+...-|+
T Consensus 579 L~~~lL~~~~f~~IwR~ia~~Ld~yL~e~IL~~nkFS~~Ga~Qf~~D~~~L~~v~~-lp~~~~---~~~~~~L~E~l~LL 654 (706)
T 3fhn_A 579 LDSMDIPLAISLKVKNELLNVIVNYFTESILKLNKFNQNGLNQFLHDFKSLSSILS-LPSHAT---NYKCMSLHELVKIL 654 (706)
T ss_dssp HHTSCCCHHHHHHHHHHHHHHHHHHHHHTTTTTSCBCHHHHHHHHHHHHHHHTTSC-CCTTCC---CHHHHHHHHHHHHH
T ss_pred HHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHHHHHHHHHHHHHHHHHhc-CCCcch---hhHHHHHHHHHHHc
Confidence 6677 688888889999999999999999888889999999999999988776666 443331 13689999999999
Q ss_pred CCCH
Q 002831 826 NMPF 829 (875)
Q Consensus 826 ~~~~ 829 (875)
.++.
T Consensus 655 ~L~~ 658 (706)
T 3fhn_A 655 KLKY 658 (706)
T ss_dssp GGGG
T ss_pred CCCC
Confidence 8874
No 6
>3ns4_A Vacuolar protein sorting-associated protein 53; GARP complex component, helical bundle, membrane tethering C membrane traffic, VPS51; HET: MSE; 2.90A {Saccharomyces cerevisiae}
Probab=39.47 E-value=1.1e+02 Score=31.93 Aligned_cols=95 Identities=9% Similarity=0.149 Sum_probs=64.6
Q ss_pred ccHHHHHHHHHHHhc-hhhhhh---------------hHh-hHHHHHhcHHHHHHHhhcCCCC---------C------h
Q 002831 761 GGICGIAANASIKAL-ADMKNI---------------NLF-GVQQICRNSIALEQALAAIPSI---------D------S 808 (875)
Q Consensus 761 ~GL~~li~~~lI~~~-~~I~~i---------------N~n-Gvkkm~rNI~aLQQ~LknI~~~---------~------e 808 (875)
+=+..++-.-|+++. +.++.| +.- |+.+|++++.+|-..|.++... + .
T Consensus 29 DK~ve~~~~~Fi~~Ii~~ckPi~pf~~~~~~rk~~~~s~v~gaEQLLLD~~sLK~~Ll~LP~~~~~~~~~~~~ts~~syt 108 (271)
T 3ns4_A 29 DKVIDIMTTNFVSNTIRLLQPVPPFSLAGSKRKFETRTVVNIGEQLLLDLELLKEIFHTLPESVSNDSDLRENTSYKRVK 108 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCSSCSSSSCSCSSCHHHHHHHHHHHHHHHHHHHHHHHHGGGGGCSCCCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHheeCcccccccccccccccccchhHHHHHHHHHHHHHHHHHcccccccccccCCCcccchhh
Confidence 333344444566666 667778 887 9999999999999999877642 1 1
Q ss_pred HHHHhhhHHHHHHHHhcC---CCHHHHHHHHHhcCCC-CCHHHHHHhhhhc
Q 002831 809 EAVRRRLDRVRTYYELLN---MPFEALLAFVTEHENL-FTTTEYASLLKVN 855 (875)
Q Consensus 809 ~~v~~~l~ra~~yyeL~~---~~~e~ll~~i~e~~~~-Fs~~Eyk~ll~L~ 855 (875)
-.|...|.++-.+.-++. .+|+++++....--.. -+..+...+|.|-
T Consensus 109 K~V~~~~~kle~lLKvLm~P~dppe~~ve~Y~~Li~dn~s~~nF~KIL~LK 159 (271)
T 3ns4_A 109 RHADNNIDQLLKFIKLLMAPLDSADDYYETYSKLTNNNPDSAVWSFVLALK 159 (271)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCSCHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred hHHhhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCHHHHHHHHHhc
Confidence 124456667767776665 4577787776665444 6777777777774
No 7
>3k8p_C DSL1, KLLA0C02695P; intracellular trafficking, DSL1 complex, multisubunit tethering complex, snare proteins; 2.60A {Kluyveromyces lactis}
Probab=36.94 E-value=84 Score=34.06 Aligned_cols=91 Identities=14% Similarity=0.168 Sum_probs=59.9
Q ss_pred HhchhhhhhhHhhHHHHHhcHHHHH--HHhhcCCCCChHHHHhhhHHHHH----HHHhcCCCHHHHHHHHHhcC-CCCCH
Q 002831 773 KALADMKNINLFGVQQICRNSIALE--QALAAIPSIDSEAVRRRLDRVRT----YYELLNMPFEALLAFVTEHE-NLFTT 845 (875)
Q Consensus 773 ~~~~~I~~iN~nGvkkm~rNI~aLQ--Q~LknI~~~~e~~v~~~l~ra~~----yyeL~~~~~e~ll~~i~e~~-~~Fs~ 845 (875)
-....|..-+...+..+|..|..+. +.+..+ + .+-+... -=+++..+-.+|.....++. ..||.
T Consensus 254 l~LeDISE~eS~~La~Li~~l~~l~~lP~l~~i---~------~Yv~~W~Kf~~L~~IL~ssLkDI~~lW~eGeL~~Fst 324 (357)
T 3k8p_C 254 LHWRVISEKSSENLSEFIMLLLSGLEIPRLNLI---E------TYRHSREKLGILSKILTAHLKDILEMFYEGEFFLFET 324 (357)
T ss_dssp HTSSCCCHHHHHHHHHHHHHHHHHTCCGGGTTC---H------HHHHHHHHHHHHHHHHTCCHHHHHHHHHTTGGGGSCH
T ss_pred cCcccCCHHHHHHHHHHHHHHHcCCCCcccccH---H------HHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCcceecH
Confidence 3445555555566666676666654 222111 1 1222221 23577888899999988876 58999
Q ss_pred HHHHHhhhhccCCCCCchHHHHHHHhh
Q 002831 846 TEYASLLKVNVPGREIPSDALDRVSEI 872 (875)
Q Consensus 846 ~Eyk~ll~L~~~~~~~~~~~~~rl~~i 872 (875)
+|++.|++..|-..+--.+++++|.+|
T Consensus 325 dEVv~LIrALFaDT~~Rr~aI~eIrei 351 (357)
T 3k8p_C 325 DEIVQWIILLFADTPTRRDCIDEIRRV 351 (357)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCCHHHHHHHHHHHHH
Confidence 999999999998777767777777665
No 8
>1wer_A P120GAP; GTPase activation, RAS, signal transduction, growth regulation, cancer; 1.60A {Homo sapiens} SCOP: a.116.1.2 PDB: 1wq1_G*
Probab=23.91 E-value=2.5e+02 Score=29.99 Aligned_cols=44 Identities=7% Similarity=0.105 Sum_probs=37.6
Q ss_pred CcchhHHHHHHHHHhhccccHHHHHHHHHHHHhcCCCccccccc
Q 002831 451 GNDGLLAFVENFVKDHLLPTMFVDYRKGVQQAISSPAAFRPRAH 494 (875)
Q Consensus 451 ~~~~l~~Fld~Fv~~vFLPql~~~~~~~~~~~~~~~daf~~~~~ 494 (875)
+++..+..++.|++.+-.+.|++.+...+...+.+.+.|..||.
T Consensus 77 ~Ns~~tkll~~y~r~~g~~yL~~~L~~~i~~i~~~~~~~EiDP~ 120 (334)
T 1wer_A 77 ATTLASTLMEQYMKATATQFVHHALKDSILKIMESKQSCELSPS 120 (334)
T ss_dssp SCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCGG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeeCHH
Confidence 44568889999999888888999999999999998887777664
No 9
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus}
Probab=14.77 E-value=2.7e+02 Score=30.09 Aligned_cols=94 Identities=11% Similarity=0.112 Sum_probs=59.5
Q ss_pred hHHHHHHHHHhhccccHHHHHHHHHHHHhcC--CCcccccccccccccccccCCCcccccHHHHHHHHHHHHHHHhcch-
Q 002831 455 LLAFVENFVKDHLLPTMFVDYRKGVQQAISS--PAAFRPRAHTAATYVPSIEKGRPVLQGLLAIDFLAKEVLGWAQAMP- 531 (875)
Q Consensus 455 l~~Fld~Fv~~vFLPql~~~~~~~~~~~~~~--~daf~~~~~~~~~~~~~~~~~rPIlksa~~f~~li~~l~~ml~t~P- 531 (875)
+..+|..|| ..||-..+++....++.+++. -+||.+...- ...+ -|+++++.++..++.++..+-
T Consensus 7 ~~~wF~~~V-~~Wl~~~~~k~~~~v~~Ai~~Dk~~~~~~~~~~------~~hS-----sSvvDif~~~~Q~~~~~~~L~W 74 (341)
T 3swh_A 7 YPAWFEPFV-IQWLDENEEVSRDFLHGALERDKKDGFQQTSEH------ALFS-----CSVVDVFSQLNQSFEIIKKLEC 74 (341)
T ss_dssp --CCSHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSSS------CCSC-----THHHHHHHHHHHHHHHHHHSCC
T ss_pred cHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhccCCccccccC------cccc-----chHHHHHHHHHHHHHHHHHCCC
Confidence 444555555 345556677777888888762 3444321110 0011 378899999999998887763
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002831 532 -------KFAADLVKYVQTFLERTYERCRTSYMEAV 560 (875)
Q Consensus 532 -------~y~~~~~~li~~~L~~yye~c~~~y~~lv 560 (875)
.|-..|++.|+..+..|-+.....|.+.+
T Consensus 75 pD~~~~~~f~t~l~~~i~~~~~~Y~~~l~~~~~~~~ 110 (341)
T 3swh_A 75 PDPQIVGHYMRRFAKTISNVLLQYADIVSKDFASYC 110 (341)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45567788888888888777777776543
No 10
>2dwf_A Pulmonary surfactant-associated protein B; mini-B, SP-B, surfactant protein B, lipid associated protein, surface active protein; NMR {Synthetic} SCOP: j.35.1.1 PDB: 2jou_A
Probab=14.48 E-value=79 Score=22.23 Aligned_cols=13 Identities=15% Similarity=0.603 Sum_probs=11.4
Q ss_pred HHHHHHHhhcCCC
Q 002831 434 QFTDKVASMLPQK 446 (875)
Q Consensus 434 ~Fi~~~~~ilp~~ 446 (875)
.||.+++.++|.+
T Consensus 6 tlikriq~vIPk~ 18 (34)
T 2dwf_A 6 ALIKRIQAMIPKG 18 (34)
T ss_dssp HHHHHHHHHCTTC
T ss_pred HHHHHHHhhcCCc
Confidence 5899999999975
Done!