Query 002831
Match_columns 875
No_of_seqs 162 out of 191
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 03:20:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002831.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/002831hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wera_ a.116.1.2 (A:) p120GAP 20.7 1.4E+02 0.01 29.1 9.3 45 451-495 73-117 (324)
2 d1d2za_ a.77.1.2 (A:) Pelle de 14.7 24 0.0018 29.0 1.1 31 152-183 71-101 (102)
3 d1fafa_ a.2.3.1 (A:) Large T a 12.3 59 0.0043 25.5 2.8 48 816-871 8-57 (79)
4 d1q08a_ a.6.1.3 (A:) Transcrip 9.6 92 0.0067 24.9 3.2 27 833-859 6-33 (94)
5 d1fgka_ d.144.1.7 (A:) Fibrobl 9.1 1.3E+02 0.0098 28.5 4.9 60 815-874 221-296 (299)
6 d1hdja_ a.2.3.1 (A:) HSP40 {Hu 9.0 34 0.0025 26.6 0.1 37 819-863 3-39 (77)
7 d2tpta1 a.46.2.1 (A:1-70) Thym 6.8 1.8E+02 0.013 21.6 3.6 35 828-863 3-37 (70)
8 d1jeqa1 a.140.2.1 (A:559-609) 6.6 4.1E+02 0.03 18.7 5.3 46 828-873 2-49 (51)
9 d1o17a1 a.46.2.1 (A:1-70) Anth 6.4 2.7E+02 0.02 20.4 4.5 34 828-862 2-35 (70)
10 d1tiza_ a.39.1.5 (A:) Calmodul 5.2 5E+02 0.037 18.2 5.9 54 818-871 3-65 (67)
No 1
>d1wera_ a.116.1.2 (A:) p120GAP domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.75 E-value=1.4e+02 Score=29.10 Aligned_cols=45 Identities=7% Similarity=0.104 Sum_probs=38.2
Q ss_pred CcchhHHHHHHHHHhhccccHHHHHHHHHHHHhcCCCcccccccc
Q 002831 451 GNDGLLAFVENFVKDHLLPTMFVDYRKGVQQAISSPAAFRPRAHT 495 (875)
Q Consensus 451 ~~~~l~~Fld~Fv~~vFLPql~~~~~~~~~~~~~~~daf~~~~~~ 495 (875)
+++..+.+++.|++.+--+.|.+.+...+...+.+...|..|+..
T Consensus 73 ~NS~~tkl~~~y~r~~g~~yL~~~L~~~i~~i~~~~~~~Evdp~~ 117 (324)
T d1wera_ 73 ATTLASTLMEQYMKATATQFVHHALKDSILKIMESKQSCELSPSK 117 (324)
T ss_dssp SCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCGGG
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcCccc
Confidence 445788999999999888889999999999999888888777654
No 2
>d1d2za_ a.77.1.2 (A:) Pelle death domain {Drosophila melanogaster [TaxId: 7227]}
Probab=14.73 E-value=24 Score=28.97 Aligned_cols=31 Identities=19% Similarity=0.172 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhCChHHHHHHHHhhhhhHHHHH
Q 002831 152 LQTMVECLCILGKVAAAGAIICQRLRPTIHEI 183 (875)
Q Consensus 152 i~~Lle~L~~LgkL~~A~~~i~qRl~~Elh~i 183 (875)
|+.|+++|..||+. .|+++|.+=+...+|.+
T Consensus 71 v~~L~~~L~~~~~~-da~~~i~~~~~~~~~~~ 101 (102)
T d1d2za_ 71 VQTLFALFKKLKLH-NAMRLIKDYVSEDLHKY 101 (102)
T ss_dssp HHHHHHHHHHTTCH-HHHHHTGGGSCGGGGGG
T ss_pred HHHHHHHHHHcChH-HHHHHHHHHHHHHHHhh
Confidence 89999999999998 78899999888888764
No 3
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}
Probab=12.29 E-value=59 Score=25.53 Aligned_cols=48 Identities=13% Similarity=0.182 Sum_probs=34.6
Q ss_pred HHHHHHHHhcCCCHHH--HHHHHHhcCCCCCHHHHHHhhhhccCCCCCchHHHHHHHh
Q 002831 816 DRVRTYYELLNMPFEA--LLAFVTEHENLFTTTEYASLLKVNVPGREIPSDALDRVSE 871 (875)
Q Consensus 816 ~ra~~yyeL~~~~~e~--ll~~i~e~~~~Fs~~Eyk~ll~L~~~~~~~~~~~~~rl~~ 871 (875)
.....||++|..+++. =.+.|+. -|+.+....+|.++..++..++|.+
T Consensus 8 ~~~~~~y~iLgl~~~~~~~~~~Ikk--------aYr~l~~~~HPDk~g~~e~~~~in~ 57 (79)
T d1fafa_ 8 ADKERLLELLKLPRQLWGDFGRMQQ--------AYKQQSLLLHPDKGGSHALMQELNS 57 (79)
T ss_dssp HHHHHHHHHHTCCSSSTTCHHHHHH--------HHHHHHHHSSGGGSCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCCCHHHHHH--------HHHHHHHHhCcccCCCHHHHHHHHH
Confidence 4578999999987654 2234554 4888999999988777766666653
No 4
>d1q08a_ a.6.1.3 (A:) Transcriptional regulator ZntR {Escherichia coli [TaxId: 562]}
Probab=9.57 E-value=92 Score=24.92 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=19.6
Q ss_pred HHHHHhc-CCCCCHHHHHHhhhhccCCC
Q 002831 833 LAFVTEH-ENLFTTTEYASLLKVNVPGR 859 (875)
Q Consensus 833 l~~i~e~-~~~Fs~~Eyk~ll~L~~~~~ 859 (875)
|.+|+.. .-.||.+|.+.||.|...+.
T Consensus 6 L~fI~~ar~lGFsL~EI~~ll~l~~~~~ 33 (94)
T d1q08a_ 6 LKFIRHARQLGFSLESIRELLSIRIDPE 33 (94)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHCCCCHHHHHHHHHhccCCC
Confidence 3445443 36899999999999986543
No 5
>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.13 E-value=1.3e+02 Score=28.55 Aligned_cols=60 Identities=15% Similarity=0.188 Sum_probs=43.8
Q ss_pred hHHHHHHHHhcC--------CCHHHHHHHHHhcC-CC---CCHHHHHHhhhhccC----CCCCchHHHHHHHhhhc
Q 002831 815 LDRVRTYYELLN--------MPFEALLAFVTEHE-NL---FTTTEYASLLKVNVP----GREIPSDALDRVSEILS 874 (875)
Q Consensus 815 l~ra~~yyeL~~--------~~~e~ll~~i~e~~-~~---Fs~~Eyk~ll~L~~~----~~~~~~~~~~rl~~il~ 874 (875)
..-...+|||++ .+.+++.+.+.++. .. .--++++.|++-|.. .|++..+.++.|.+|++
T Consensus 221 wS~Gvvl~ell~~g~~p~~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~dP~~Rps~~eil~~L~~i~a 296 (299)
T d1fgka_ 221 WSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVA 296 (299)
T ss_dssp HHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCCCCCCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHhccCCCCCCCCCCHHHHHHHHHcCCCCCCCccchHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHhh
Confidence 566677888874 35678888887753 11 123679999998873 58888899999999875
No 6
>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.97 E-value=34 Score=26.57 Aligned_cols=37 Identities=16% Similarity=0.218 Sum_probs=24.9
Q ss_pred HHHHHhcCCCHHHHHHHHHhcCCCCCHHHHHHhhhhccCCCCCch
Q 002831 819 RTYYELLNMPFEALLAFVTEHENLFTTTEYASLLKVNVPGREIPS 863 (875)
Q Consensus 819 ~~yyeL~~~~~e~ll~~i~e~~~~Fs~~Eyk~ll~L~~~~~~~~~ 863 (875)
+.||++|..+++.=.+.|+. -|+.+.....|.+...+
T Consensus 3 kdyY~iLgv~~~as~~eIk~--------ay~~l~~~~hPD~~~~~ 39 (77)
T d1hdja_ 3 KDYYQTLGLARGASDEEIKR--------AYRRQALRYHPDKNKEP 39 (77)
T ss_dssp CCSHHHHTCCTTCCHHHHHH--------HHHHHHHTTCTTTCCCT
T ss_pred CChHHHcCCCCCcCHHHHHH--------HHHHHHHHhccccccch
Confidence 46899999877655555554 36777778888654433
No 7
>d2tpta1 a.46.2.1 (A:1-70) Thymidine phosphorylase {Escherichia coli [TaxId: 562]}
Probab=6.81 E-value=1.8e+02 Score=21.59 Aligned_cols=35 Identities=3% Similarity=-0.053 Sum_probs=28.2
Q ss_pred CHHHHHHHHHhcCCCCCHHHHHHhhhhccCCCCCch
Q 002831 828 PFEALLAFVTEHENLFTTTEYASLLKVNVPGREIPS 863 (875)
Q Consensus 828 ~~e~ll~~i~e~~~~Fs~~Eyk~ll~L~~~~~~~~~ 863 (875)
-|+++++...+ |..+|++|.+.+++-...|+-.+.
T Consensus 3 ~~qeiI~k~~~-g~~Ls~~E~~~~~~~i~~g~~~d~ 37 (70)
T d2tpta1 3 LAQEIIRKKRD-GHALSDEEIRFFINGIRDNTISEG 37 (70)
T ss_dssp CHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTCSCHH
T ss_pred CHHHHHHHHHC-CCCcCHHHHHHHHHHHHcCCchHH
Confidence 47788888886 578999999999998887776643
No 8
>d1jeqa1 a.140.2.1 (A:559-609) DNA binding C-terminal domain of ku70 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.64 E-value=4.1e+02 Score=18.66 Aligned_cols=46 Identities=11% Similarity=0.099 Sum_probs=33.6
Q ss_pred CHHHHHHHHHhcC-CCCCHHHHHHhhhhcc-CCCCCchHHHHHHHhhh
Q 002831 828 PFEALLAFVTEHE-NLFTTTEYASLLKVNV-PGREIPSDALDRVSEIL 873 (875)
Q Consensus 828 ~~e~ll~~i~e~~-~~Fs~~Eyk~ll~L~~-~~~~~~~~~~~rl~~il 873 (875)
+++++-+.+..+. ..+|..|+|.+++-.- +..|.=++++.||.+.+
T Consensus 2 se~e~~~~~~~~~L~kltV~~LK~~lk~~gL~~sGkKa~Li~Ri~~~l 49 (51)
T d1jeqa1 2 SEEELKTHISKGTLGKFTVPMLKEACRAYGLKSGLKKQELLEALTKHF 49 (51)
T ss_dssp CHHHHHHHHHHTCGGGCCHHHHHHHHHHTTCCCCSSHHHHHHHHHHHH
T ss_pred CHHHHHHHhccCcHhhCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHh
Confidence 3456666676665 7899999999987553 34455679999998765
No 9
>d1o17a1 a.46.2.1 (A:1-70) Anthranilate phosphoribosyltransferase (TrpD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=6.36 E-value=2.7e+02 Score=20.36 Aligned_cols=34 Identities=15% Similarity=0.151 Sum_probs=23.8
Q ss_pred CHHHHHHHHHhcCCCCCHHHHHHhhhhccCCCCCc
Q 002831 828 PFEALLAFVTEHENLFTTTEYASLLKVNVPGREIP 862 (875)
Q Consensus 828 ~~e~ll~~i~e~~~~Fs~~Eyk~ll~L~~~~~~~~ 862 (875)
+-+++++.+.+ |...|.+|.+.+++-...|+-.+
T Consensus 2 ~~~~il~~l~~-g~~Ls~~e~~~~~~~i~~g~~s~ 35 (70)
T d1o17a1 2 NINEILKKLIN-KSDLEINEAEELAKAIIRGEVPE 35 (70)
T ss_dssp CHHHHHHHHHT-TCCCCHHHHHHHHHHHHTTCSCH
T ss_pred CHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCCCCH
Confidence 44667777776 56678888888887777766653
No 10
>d1tiza_ a.39.1.5 (A:) Calmodulin-related protein T21P5.17 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=5.22 E-value=5e+02 Score=18.18 Aligned_cols=54 Identities=6% Similarity=0.145 Sum_probs=36.8
Q ss_pred HHHHHHhcC------CCHHHHHHHHHhcCCCCCHHHHHHhhhhccCC---CCCchHHHHHHHh
Q 002831 818 VRTYYELLN------MPFEALLAFVTEHENLFTTTEYASLLKVNVPG---REIPSDALDRVSE 871 (875)
Q Consensus 818 a~~yyeL~~------~~~e~ll~~i~e~~~~Fs~~Eyk~ll~L~~~~---~~~~~~~~~rl~~ 871 (875)
||+-|..|. .+.+++...++.-|...|.+|++.+++..-.. +-...+.++-+.+
T Consensus 3 ~r~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~~i~~~~~~~D~d~dg~I~~~EF~~~m~~ 65 (67)
T d1tiza_ 3 AKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFTSCIEK 65 (67)
T ss_dssp HHHHHHHHCTTSSSCEEHHHHHHHHHHTCTTSCHHHHHHHHHHHCCSSSSEECHHHHHHHHHT
T ss_pred HHHHHHHHCCCCcCcCcHHHHHHHHHHhccccchHHHHHHHHHhCCCCCCeEeHHHHHHHHHH
Confidence 566777774 34788888888888889999999998888542 2224454444443
Done!