BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002832
(875 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 1298 bits (3359), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 637/864 (73%), Positives = 708/864 (81%), Gaps = 4/864 (0%)
Query: 7 TMEAVLKEAVDLENVPMEEVFETLRCNKEGLSTEAAEERLTIFGYNKLEEKQESKILKFL 66
++E + E VDLE +P+EEVF+ L+C++EGL+T+ E+R+ IFG NKLEEK+ESK+LKFL
Sbjct: 3 SLEDIKNETVDLEKIPIEEVFQQLKCSREGLTTQEGEDRIQIFGPNKLEEKKESKLLKFL 62
Query: 67 GFMWNPLSWVMEXXXXXXXXXXNGGGKPPDWQDFVGIVTLLLINSTISFIEEXXXXXXXX 126
GFMWNPLSWVME NG G+PPDWQDFVGI+ LL+INSTISFIEE
Sbjct: 63 GFMWNPLSWVMEMAAIMAIALANGDGRPPDWQDFVGIICLLVINSTISFIEENNAGNAAA 122
Query: 127 XXXXXXXPKSKVLRDGKWMEEDAAILVPGDIISVKLGDIIPADARLLEGDPLKIDQSALT 186
PK+KVLRDGKW E++AAILVPGDI+S+KLGDIIPADARLLEGDPLK+DQSALT
Sbjct: 123 ALMAGLAPKTKVLRDGKWSEQEAAILVPGDIVSIKLGDIIPADARLLEGDPLKVDQSALT 182
Query: 187 GESLPVTKGPGDSVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQQGHFQKVLTA 246
GESLPVTK PG V+SGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQ GHFQKVLTA
Sbjct: 183 GESLPVTKHPGQEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTA 242
Query: 247 IGNFCICSIAVGMIVEIIVMYPIQHRKYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSH 306
IGNFCICSIA+GM++EIIVMYPIQ RKYR GIDNLLVLLIGGIPIAMPTVLSVTMAIGSH
Sbjct: 243 IGNFCICSIAIGMVIEIIVMYPIQRRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSH 302
Query: 307 RLSLQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEIFAKGVDADAVVLMA 366
RLS QGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNL+E+F KGV+ D V+L A
Sbjct: 303 RLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLVEVFCKGVEKDQVLLFA 362
Query: 367 ARASRVENQDAIDAAIVGMLADPKEARANIQEVHFLPFNPTDKRTALTYIDSEGKMHRVS 426
A ASRVENQDAIDAA+VGMLADPKEARA I+EVHFLPFNP DKRTALTYID G HRVS
Sbjct: 363 AMASRVENQDAIDAAMVGMLADPKEARAGIREVHFLPFNPVDKRTALTYIDGSGNWHRVS 422
Query: 427 KGAPEQILNLVRNKSEIERRVHAIIDKFAERGLRSLAVAYQEVPDGRKESSGGPWQFIGL 486
KGAPEQIL L + +++ ++V +IIDK+AERGLRSLAVA Q VP+ KES G PW+F+GL
Sbjct: 423 KGAPEQILELAKASNDLSKKVLSIIDKYAERGLRSLAVARQVVPEKTKESPGAPWEFVGL 482
Query: 487 MPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSALLGQNK 546
+PLFDPPRHDSAETIRRALNLGVNVKMITGDQLAI KETGRRLGMGTNMYPSSALLG +K
Sbjct: 483 LPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGTHK 542
Query: 547 DESIVALPVDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKXXXX 606
D ++ ++PV+ELIEKADGFAGVFPEHKYEIVK+LQ RKHI GMTGDGVNDAPALKK
Sbjct: 543 DANLASIPVEELIEKADGFAGVFPEHKYEIVKKLQERKHIVGMTGDGVNDAPALKKADIG 602
Query: 607 XXXXXXXXXXXXXXXXVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFML 666
VLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIV GFML
Sbjct: 603 IAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFML 662
Query: 667 LALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFTTGVILGGYLAM 726
+ALIW+FDF FMVLIIAILNDGTIMTISKDRVKPSP PDSWKL EIF TGV+LGGY A+
Sbjct: 663 IALIWEFDFSAFMVLIIAILNDGTIMTISKDRVKPSPTPDSWKLKEIFATGVVLGGYQAI 722
Query: 727 MTVIFFWAAYQTDFFPRTFGVSSLHEKDIDDWKKLASAIYLQVSTISQALIFVTRARSWS 786
MTVIFFWAA++TDFF TFGV S+ D+ +L A+YLQVS ISQALIFVTR+RSWS
Sbjct: 723 MTVIFFWAAHKTDFFSDTFGVRSIR----DNNHELMGAVYLQVSIISQALIFVTRSRSWS 778
Query: 787 FVDRPGXXXXXXXXXXXXXXTLIAVYANWSFAAIEXXXXXXXXXXXLYNLIFYIPLDFIK 846
FV+RPG TLIAVYANW FA I LY+++ Y PLD K
Sbjct: 779 FVERPGALLMIAFLIAQLIATLIAVYANWEFAKIRGIGWGWAGVIWLYSIVTYFPLDVFK 838
Query: 847 FFIRYALSGKAWDLVIEQRVHIAL 870
F IRY LSGKAW + E + +
Sbjct: 839 FAIRYILSGKAWLNLFENKTAFTM 862
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 432 bits (1111), Expect = e-121, Method: Compositional matrix adjust.
Identities = 278/772 (36%), Positives = 414/772 (53%), Gaps = 59/772 (7%)
Query: 36 GLSTEAAEERLTIFGYNKLEEKQESKILKFLGFMWNPLSWVMEXXXXXXXXXXNGGGKPP 95
GL++E +R +G N+++E++E+ LKFLGF P+ +VME
Sbjct: 87 GLTSEEVVQRRRKYGLNQMKEEKENHFLKFLGFFVGPIQFVMEGAAVLAAGLE------- 139
Query: 96 DWQDFVGIVTLLLINSTISFIEEXXXXXXXXXXXXXXXPKSKVLRDGKWMEEDAAILVPG 155
DW DF I LLL+N+ + F++E K+ VLRDG E +A +VPG
Sbjct: 140 DWVDFGVICGLLLLNAVVGFVQEFQAGSIVDELKKTLALKAVVLRDGTLKEIEAPEVVPG 199
Query: 156 DIISVKLGDIIPADARLLEGDP-LKIDQSALTGESLPVTKGPGDSVYSGSTCKQGEIEAV 214
DI+ V+ G IIPAD R++ D L++DQSALTGESL V K GD V++ S K+GE V
Sbjct: 200 DILQVEEGTIIPADGRIVTDDAFLQVDQSALTGESLAVDKHKGDQVFASSAVKRGEAFVV 259
Query: 215 VIATGVHTFFGKAAHLVDS-TNQQGHFQKVLTAIGNFCICSIAVGMIVEIIVMYPIQHRK 273
+ ATG +TF G+AA LV++ + GHF +VL IG + + I +++++ +
Sbjct: 260 ITATGDNTFVGRAAALVNAASGGSGHFTEVLNGIGTILLILV----IFTLLIVWVSSFYR 315
Query: 274 YRPGIDNL---LVLLIGGIPIAMPTVLSVTMAIGSHRLSLQGAITKRMTAIEEMAGMDVL 330
P + L L + I G+P+ +P V++ TMA+G+ L+ + AI ++++AIE +AG+++L
Sbjct: 316 SNPIVQILEFTLAITIIGVPVGLPAVVTTTMAVGAAYLAKKKAIVQKLSAIESLAGVEIL 375
Query: 331 CSDKTGTLTLNKLSVDKNLIEIFAKGVDADAVVLMAARASRVENQ--DAIDAAIVGMLAD 388
CSDKTGTLT NKLS+ GVD + ++L A A+ + + DAID A + L
Sbjct: 376 CSDKTGTLTKNKLSLHDPYT---VAGVDPEDLMLTACLAASRKKKGIDAIDKAFLKSLKY 432
Query: 389 PKEARANIQE---VHFLPFNPTDKRTALTYIDSEGKMHRVSKGAPEQILNLVRNK----S 441
A++ + + + F PF+P K+ +G+ KGAP +L V
Sbjct: 433 YPRAKSVLSKYKVLQFHPFDPVSKKVVAVVESPQGERITCVKGAPLFVLKTVEEDHPIPE 492
Query: 442 EIERRVHAIIDKFAERGLRSLAVAYQEVPDGRKESSGGPWQFIGLMPLFDPPRHDSAETI 501
E+++ + +FA RG RSL VA RK G W+ +G+MP DPPRHD+ +T+
Sbjct: 493 EVDQAYKNKVAEFATRGFRSLGVA-------RKRGEGS-WEILGIMPCMDPPRHDTYKTV 544
Query: 502 RRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSALLGQNKDESIVALPVDELIEK 561
A LG+++KM+TGD + IA+ET R+LG+GTN+Y + L + + V + +E
Sbjct: 545 CEAKTLGLSIKMLTGDAVGIARETSRQLGLGTNIYNAERLGLGGGGD-MPGSEVYDFVEA 603
Query: 562 ADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKXXXXXXXXXXXXXXXXXXX 621
ADGFA VFP+HKY +V+ LQ R ++ MTGDGVNDAP+LKK
Sbjct: 604 ADGFAEVFPQHKYNVVEILQQRGYLVAMTGDGVNDAPSLKKADTGIAVEGSSDAARSAAD 663
Query: 622 XVLTEPGLSVIISAVLTSRAIFQRMKNYTIY--AVSITIRIVLGFMLLALIWKFDFPPFM 679
V PGL II A+ TSR IF RM Y +Y A+SI + I LG + L + +
Sbjct: 664 IVFLAPGLGAIIDALKTSRQIFHRMYAYVVYRIALSIHLEIFLGLWIAILNRSLNIE--L 721
Query: 680 VLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFTTGVILGGYLAM---MTVIFFWAAY 736
V+ IAI D + I+ D S P W L +++ V+LG LA+ +TV +A
Sbjct: 722 VVFIAIFADVATLAIAYDNAPYSQTPVKWNLPKLWGMSVLLGVVLAVGTWITVTTMYAQG 781
Query: 737 QTDFFPRTFGVSSLHEKDIDDWKKLASAIYLQVSTISQALIFVTRARS--WS 786
+ + FG + ++LQ+S LIF+TRA WS
Sbjct: 782 ENGGIVQNFG-------------NMDEVLFLQISLTENWLIFITRANGPFWS 820
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 159 bits (402), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 163/690 (23%), Positives = 294/690 (42%), Gaps = 100/690 (14%)
Query: 93 KPPDWQDFVGIV--TLLLINSTISFIEEXXXXXXXXXXXXXXXPKSKVLRDGKWMEEDAA 150
+P + ++G+V +++I S+ +E ++ V+R+G+ M +A
Sbjct: 99 EPQNDNLYLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIRNGEKMSINAE 158
Query: 151 ILVPGDIISVKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGPG----------DSV 200
+V GD++ VK GD IPAD R++ + K+D S+LTGES P T+ P +
Sbjct: 159 EVVVGDLVEVKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRSPDFTNENPLETRNIA 218
Query: 201 YSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQQGHFQKVLTAIGNF--CICSIAVG 258
+ + C +G +V+ TG T G+ A L ++ +G + I +F I +AV
Sbjct: 219 FFSTNCVEGTARGIVVYTGDRTVMGRIATL--ASGLEGGQTPIAAEIEHFIHIITGVAVF 276
Query: 259 MIVEIIVMYPIQHRKYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSLQGAITKRM 318
+ V ++ I + + L+ +++ +P + ++V + + + R++ + + K +
Sbjct: 277 LGVSFFILSLILEYTWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNL 336
Query: 319 TAIEEMAGMDVLCSDKTGTLTLNKLSV-----DKNLIEI----FAKGVDADA-------- 361
A+E + +CSDKTGTLT N+++V D + E GV D
Sbjct: 337 EAVETLGSTSTICSDKTGTLTQNRMTVAHMWSDNQIHEADTTENQSGVSFDKTSATWLAL 396
Query: 362 --VVLMAARASRVENQ------------DAIDAAIVGML----ADPKEARANIQEVHFLP 403
+ + RA NQ DA ++A++ + KE R ++ +P
Sbjct: 397 SRIAGLCNRAVFQANQENLPILKRAVAGDASESALLKCIELCCGSVKEMRERYTKIVEIP 456
Query: 404 FNPTDKRTALTYID---SEGKMHRVSKGAPEQILN-----LVRNKSEI--ERRVHAIIDK 453
FN T+K + + +E + V KGAPE+IL+ L+ K + E A +
Sbjct: 457 FNSTNKYQLSIHKNPNTAEPRHLLVMKGAPERILDRCSSILIHGKEQPLDEELKDAFQNA 516
Query: 454 FAE---RGLRSLAVAYQEVPDGR--------KESSGGPWQ---FIGLMPLFDPPRHDSAE 499
+ E G R L + +PD + + P F+GL+ + DPPR +
Sbjct: 517 YLELGGLGERVLGFCHLFLPDEQFPEGFQFDTDDVNFPLDNLCFVGLISMIDPPRAAVPD 576
Query: 500 TIRRALNLGVNVKMITGDQLAIAKETGRRLGM--------------------GTNMYPSS 539
+ + + G+ V M+TGD AK + +G+ N +
Sbjct: 577 AVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAK 636
Query: 540 ALLGQNKD-ESIVALPVDELIEKADG--FAGVFPEHKYEIVKRLQARKHICGMTGDGVND 596
A + D + + + +D++++ FA P+ K IV+ Q + I +TGDGVND
Sbjct: 637 ACVVHGSDLKDMTSEQLDDILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVND 696
Query: 597 APALKKXXX-XXXXXXXXXXXXXXXXXVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVS 655
+PA KK +L + + I++ V R IF +K Y ++
Sbjct: 697 SPASKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLT 756
Query: 656 ITIRIVLGFMLLALIWKFDFPPFMVLIIAI 685
I + F++ +I P V I+ I
Sbjct: 757 SNIPEITPFLIF-IIANIPLPLGTVTILCI 785
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 156 bits (395), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 162/690 (23%), Positives = 293/690 (42%), Gaps = 100/690 (14%)
Query: 93 KPPDWQDFVGIV--TLLLINSTISFIEEXXXXXXXXXXXXXXXPKSKVLRDGKWMEEDAA 150
+P + ++G+V +++I S+ +E ++ V+R+G+ M +A
Sbjct: 93 EPQNDNLYLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIRNGEKMSINAE 152
Query: 151 ILVPGDIISVKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGPG----------DSV 200
+V GD++ VK GD IPAD R++ + K+D S+LTGES P T+ P +
Sbjct: 153 EVVVGDLVEVKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRSPDFTNENPLETRNIA 212
Query: 201 YSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQQGHFQKVLTAIGNF--CICSIAVG 258
+ + C +G +V+ TG T G+ A L ++ +G + I +F I +AV
Sbjct: 213 FFSTNCVEGTARGIVVYTGDRTVMGRIATL--ASGLEGGQTPIAAEIEHFIHIITGVAVF 270
Query: 259 MIVEIIVMYPIQHRKYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSLQGAITKRM 318
+ V ++ I + + L+ +++ +P + ++V + + + R++ + + K +
Sbjct: 271 LGVSFFILSLILEYTWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNL 330
Query: 319 TAIEEMAGMDVLCSDKTGTLTLNKLSV-----DKNLIEI----FAKGVDADA-------- 361
A+E + +CS KTGTLT N+++V D + E GV D
Sbjct: 331 EAVETLGSTSTICSXKTGTLTQNRMTVAHMWSDNQIHEADTTENQSGVSFDKTSATWLAL 390
Query: 362 --VVLMAARASRVENQ------------DAIDAAIVGML----ADPKEARANIQEVHFLP 403
+ + RA NQ DA ++A++ + KE R ++ +P
Sbjct: 391 SRIAGLCNRAVFQANQENLPILKRAVAGDASESALLKCIELCCGSVKEMRERYTKIVEIP 450
Query: 404 FNPTDKRTALTYID---SEGKMHRVSKGAPEQILN-----LVRNKSEI--ERRVHAIIDK 453
FN T+K + + +E + V KGAPE+IL+ L+ K + E A +
Sbjct: 451 FNSTNKYQLSIHKNPNTAEPRHLLVMKGAPERILDRCSSILIHGKEQPLDEELKDAFQNA 510
Query: 454 FAE---RGLRSLAVAYQEVPDGR--------KESSGGPWQ---FIGLMPLFDPPRHDSAE 499
+ E G R L + +PD + + P F+GL+ + DPPR +
Sbjct: 511 YLELGGLGERVLGFCHLFLPDEQFPEGFQFDTDDVNFPLDNLCFVGLISMIDPPRAAVPD 570
Query: 500 TIRRALNLGVNVKMITGDQLAIAKETGRRLGM--------------------GTNMYPSS 539
+ + + G+ V M+TGD AK + +G+ N +
Sbjct: 571 AVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAK 630
Query: 540 ALLGQNKD-ESIVALPVDELIEKADG--FAGVFPEHKYEIVKRLQARKHICGMTGDGVND 596
A + D + + + +D++++ FA P+ K IV+ Q + I +TGDGVND
Sbjct: 631 ACVVHGSDLKDMTSEQLDDILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVND 690
Query: 597 APALKKXXX-XXXXXXXXXXXXXXXXXVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVS 655
+PA KK +L + + I++ V R IF +K Y ++
Sbjct: 691 SPASKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLT 750
Query: 656 ITIRIVLGFMLLALIWKFDFPPFMVLIIAI 685
I + F++ +I P V I+ I
Sbjct: 751 SNIPEITPFLIF-IIANIPLPLGTVTILCI 779
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 156 bits (394), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 159/689 (23%), Positives = 281/689 (40%), Gaps = 98/689 (14%)
Query: 93 KPPDWQDFVGIV--TLLLINSTISFIEEXXXXXXXXXXXXXXXPKSKVLRDGKWMEEDAA 150
+P + ++G+V T++++ S+ +E ++ V+RDG+ +A
Sbjct: 129 EPANDNLYLGVVLSTVVIVTGCFSYYQEAKSSRIMDSFKNMVPQQALVIRDGEKSTINAE 188
Query: 151 ILVPGDIISVKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGPGDS----------V 200
+V GD++ VK GD IPAD R++ K+D S+LTGES P T+ P S
Sbjct: 189 FVVAGDLVEVKGGDRIPADLRIISAHGCKVDNSSLTGESEPQTRSPEFSSENPLETRNIA 248
Query: 201 YSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQQGHFQKVLTAIGNFCICSIAVGMI 260
+ + C +G VV+ TG T G+ A L + I +AV +
Sbjct: 249 FFSTNCVEGTARGVVVYTGDRTVMGRIATLASGLEVGRTPIAIEIEHFIHIITGVAVFLG 308
Query: 261 VEIIVMYPIQHRKYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSLQGAITKRMTA 320
V ++ I + + L+ +++ +P + ++V + + + R++ + + K + A
Sbjct: 309 VSFFILSLILGYSWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEA 368
Query: 321 IEEMAGMDVLCSDKTGTLTLNKLSV-----DKNLIEIFAKGVDADA-------------- 361
+E + +CSDKTGTLT N+++V D + E + A
Sbjct: 369 VETLGSTSTICSDKTGTLTQNRMTVAHMWFDNQIHEADTTENQSGAAFDKTSATWSALSR 428
Query: 362 VVLMAARASRVENQDAI---------DAAIVGMLADPKEARANIQ-------EVHFLPFN 405
+ + RA QD + DA+ +L + ++Q ++ +PFN
Sbjct: 429 IAALCNRAVFQAGQDNVPILKRSVAGDASESALLKCIELCCGSVQGMRDRNPKIVEIPFN 488
Query: 406 PTDKRTALTYID---SEGKMHRVSKGAPEQILNLVRN----------KSEIERRVHAIID 452
T+K + + SE + V KGAPE+IL+ K +++
Sbjct: 489 STNKYQLSIHENEKSSESRYLLVMKGAPERILDRCSTILLNGAEEPLKEDMKEAFQNAYL 548
Query: 453 KFAERGLRSLAVAYQEVPDGRKESSGGPWQ------------FIGLMPLFDPPRHDSAET 500
+ G R L + +P+ K + G P+ F+GLM + DPPR +
Sbjct: 549 ELGGLGERVLGFCHFALPED-KYNEGYPFDADEPNFPTTDLCFVGLMAMIDPPRAAVPDA 607
Query: 501 IRRALNLGVNVKMITGDQLAIAKETGRRLGM--------------------GTNMYPSSA 540
+ + + G+ V M+TGD AK + +G+ N + A
Sbjct: 608 VGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETIEDIAARLNIPIGQVNPRDAKA 667
Query: 541 LLGQNKDESIVALPV-DELIEKADG--FAGVFPEHKYEIVKRLQARKHICGMTGDGVNDA 597
+ D ++ V D+++ FA P+ K IV+ Q + I +TGDGVND+
Sbjct: 668 CVVHGSDLKDLSTEVLDDILHYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDS 727
Query: 598 PALKKXXX-XXXXXXXXXXXXXXXXXVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSI 656
PALKK +L + + I++ V R IF +K Y ++
Sbjct: 728 PALKKADIGVAMGISGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTS 787
Query: 657 TIRIVLGFMLLALIWKFDFPPFMVLIIAI 685
I + F++ +I P V I+ I
Sbjct: 788 NIPEITPFLVF-IIGNVPLPLGTVTILCI 815
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 153 bits (386), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 154/664 (23%), Positives = 262/664 (39%), Gaps = 119/664 (17%)
Query: 101 VGIVTLLLINSTISFIEEXXXXXXXXXXXXXXXPKSKVLRDGKWMEEDAAILVPGDIISV 160
+ ++ ++++ + +E ++ V+RDG + +A LV GD++ +
Sbjct: 144 LALIAVVVVTGCFGYYQEFKSTNIIASFKNLVPQQATVIRDGDKFQINADQLVVGDLVEM 203
Query: 161 KLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGPGDS----------VYSGSTCKQGE 210
K GD +PAD R+L+ K+D S+LTGES P T+ P + + + C +G
Sbjct: 204 KGGDRVPADIRILQAQGRKVDNSSLTGESEPQTRSPECTHESPLETRNIAFFSTMCLEGT 263
Query: 211 IEAVVIATGVHTFFGKAAHLVDSTNQQG-----HFQKVLTAIGNFCICSIAVGMIVEIIV 265
+ +V+ TG T G+ A L + + + I I A IV + +
Sbjct: 264 AQGLVVNTGDRTIIGRIASLASGVENEKTPIAIEIEHFVDIIAGLAILFGATFFIVAMCI 323
Query: 266 MYPIQHRKYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSLQGAITKRMTAIEEMA 325
Y + + + +++ +P + ++V +++ + RL+ + + K + A+E +
Sbjct: 324 GY-----TFLRAMVFFMAIVVAYVPEGLLATVTVCLSLTAKRLASKNCVVKNLEAVETLG 378
Query: 326 GMDVLCSDKTGTLTLNKLSVDKNLIEIFAKGVDADA-------------------VVLMA 366
V+CSDKTGTLT N+++V + D V+ +
Sbjct: 379 STSVICSDKTGTLTQNRMTVSHLWFDNHIHSADTTEDQSGQTFDQSSETWRALCRVLTLC 438
Query: 367 ARASRVENQDAIDAAIVGMLADPKEA----------------RANIQEVHFLPFNPTDK- 409
RA+ QDA+ ++ D E R +V +PFN T+K
Sbjct: 439 NRAAFKSGQDAVPVPKRIVIGDASETALLKFSELTLGNAMGYRERFPKVCEIPFNSTNKF 498
Query: 410 -RTALTYIDSEGKMH-RVSKGAPEQILN-----LVRNKS--------EIERRVHAIIDKF 454
+ T D H V KGAPE++L L++ + E + + +
Sbjct: 499 QLSIHTLEDPRDPRHVLVMKGAPERVLERCSSILIKGQELPLDEQWREAFQTAYLSLGGL 558
Query: 455 AER--GLRSLAVAYQEVPDGRK---ESSGGP---WQFIGLMPLFDPPRHDSAETIRRALN 506
ER G L ++ ++ P G E+ P F GL+ + DPPR + + +
Sbjct: 559 GERVLGFCQLYLSEKDYPPGYAFDVEAMNFPTSGLSFAGLVSMIDPPRATVPDAVLKCRT 618
Query: 507 LGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSALLGQNKDESIVA---LPVD------- 556
G+ V M+TGD AK +G+ + G E I A +PVD
Sbjct: 619 AGIRVIMVTGDHPITAKAIAASVGIISE--------GSETVEDIAARLRVPVDQVNRKDA 670
Query: 557 ----------------ELIEKADG-----FAGVFPEHKYEIVKRLQARKHICGMTGDGVN 595
EL+E FA P+ K IV+ Q I +TGDGVN
Sbjct: 671 RACVINGMQLKDMDPSELVEALRTHPEMVFARTSPQQKLVIVESCQRLGAIVAVTGDGVN 730
Query: 596 DAPALKKXXX-XXXXXXXXXXXXXXXXXVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAV 654
D+PALKK +L + + I++ V R IF +K Y +
Sbjct: 731 DSPALKKADIGVAMGIAGSDAAKNAADMILLDDNFASIVTGVEQGRLIFDNLKKSIAYTL 790
Query: 655 SITI 658
+ I
Sbjct: 791 TKNI 794
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 137/291 (47%), Gaps = 32/291 (10%)
Query: 427 KGAPEQIL---NLVRNKSE-------IERRVHAIIDKFA--ERGLRSLAVAYQEVPDGRK 474
KGAPE ++ N VR + ++ ++ ++I ++ LR LA+A ++ P R+
Sbjct: 515 KGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKRE 574
Query: 475 E----------SSGGPWQFIGLMPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKE 524
E F+G++ + DPPR + +I+ + G+ V MITGD A
Sbjct: 575 EMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIA 634
Query: 525 TGRRLGM-GTNM-YPSSALLGQNKDESIVALPVDELIE---KADGFAGVFPEHKYEIVKR 579
RR+G+ G N A G+ D+ LP+ E E +A FA V P HK +IV+
Sbjct: 635 ICRRIGIFGENEEVADRAYTGREFDD----LPLAEQREACRRACCFARVEPSHKSKIVEY 690
Query: 580 LQARKHICGMTGDGVNDAPALKKXXXXXXXXXXXXXXXXXXXXVLTEPGLSVIISAVLTS 639
LQ+ I MTGDGVNDAPALKK VL + S I++AV
Sbjct: 691 LQSYDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEEG 750
Query: 640 RAIFQRMKNYTIYAVSITI-RIVLGFMLLALIWKFDFPPFMVLIIAILNDG 689
RAI+ MK + Y +S + +V F+ AL P +L + ++ DG
Sbjct: 751 RAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDG 801
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 112/224 (50%), Gaps = 25/224 (11%)
Query: 152 LVPGDIISVKLGDIIPADARLL--EGDPLKIDQSALTGESLPVTK-------------GP 196
+VPGDI+ V +GD +PAD R+L + L++DQS LTGES+ V K
Sbjct: 145 IVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDK 204
Query: 197 GDSVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQ-QGHFQKVLTAIGN-----F 250
+ ++SG+ G+ +V TGV T GK + +T Q + Q+ L G
Sbjct: 205 KNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVI 264
Query: 251 CICSIAVGMIVEIIVMYPIQHRKYRPG----IDNLLVLLIGGIPIAMPTVLSVTMAIGSH 306
+ +AV +I P+ + G + L + IP +P V++ +A+G+
Sbjct: 265 SLICVAVWLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTR 324
Query: 307 RLSLQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLI 350
R++ + AI + + ++E + V+CS KTGTLT N++SV K I
Sbjct: 325 RMAKKNAIVRSLPSVETLGCTSVICSXKTGTLTTNQMSVCKMFI 368
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 137/291 (47%), Gaps = 32/291 (10%)
Query: 427 KGAPEQIL---NLVRNKSE-------IERRVHAIIDKFA--ERGLRSLAVAYQEVPDGRK 474
KGAPE ++ N VR + ++ ++ ++I ++ LR LA+A ++ P R+
Sbjct: 516 KGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKRE 575
Query: 475 E----------SSGGPWQFIGLMPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKE 524
E F+G++ + DPPR + +I+ + G+ V MITGD A
Sbjct: 576 EMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIA 635
Query: 525 TGRRLGM-GTNM-YPSSALLGQNKDESIVALPVDELIE---KADGFAGVFPEHKYEIVKR 579
RR+G+ G N A G+ D+ LP+ E E +A FA V P HK +IV+
Sbjct: 636 ICRRIGIFGENEEVADRAYTGREFDD----LPLAEQREACRRACCFARVEPSHKSKIVEY 691
Query: 580 LQARKHICGMTGDGVNDAPALKKXXXXXXXXXXXXXXXXXXXXVLTEPGLSVIISAVLTS 639
LQ+ I MTGDGVNDAPALKK VL + S I++AV
Sbjct: 692 LQSYDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEEG 751
Query: 640 RAIFQRMKNYTIYAVSITI-RIVLGFMLLALIWKFDFPPFMVLIIAILNDG 689
RAI+ MK + Y +S + +V F+ AL P +L + ++ DG
Sbjct: 752 RAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDG 802
Score = 93.6 bits (231), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 113/224 (50%), Gaps = 25/224 (11%)
Query: 152 LVPGDIISVKLGDIIPADARLL--EGDPLKIDQSALTGESLPVTK-------------GP 196
+VPGDI+ V +GD +PAD R+L + L++DQS LTGES+ V K
Sbjct: 146 IVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDK 205
Query: 197 GDSVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQ-QGHFQKVLTAIGN-----F 250
+ ++SG+ G+ +V TGV T GK + +T Q + Q+ L G
Sbjct: 206 KNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVI 265
Query: 251 CICSIAVGMIVEIIVMYPIQHRKYRPG----IDNLLVLLIGGIPIAMPTVLSVTMAIGSH 306
+ +AV +I P+ + G + L + IP +P V++ +A+G+
Sbjct: 266 SLICVAVWLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTR 325
Query: 307 RLSLQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLI 350
R++ + AI + + ++E + V+CSDKTGTLT N++SV K I
Sbjct: 326 RMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFI 369
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 137/291 (47%), Gaps = 32/291 (10%)
Query: 427 KGAPEQIL---NLVRNKSE-------IERRVHAIIDKFA--ERGLRSLAVAYQEVPDGRK 474
KGAPE ++ N VR + ++ ++ ++I ++ LR LA+A ++ P R+
Sbjct: 515 KGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKRE 574
Query: 475 E----------SSGGPWQFIGLMPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKE 524
E F+G++ + DPPR + +I+ + G+ V MITGD A
Sbjct: 575 EMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIA 634
Query: 525 TGRRLGM-GTNM-YPSSALLGQNKDESIVALPVDELIE---KADGFAGVFPEHKYEIVKR 579
RR+G+ G N A G+ D+ LP+ E E +A FA V P HK +IV+
Sbjct: 635 ICRRIGIFGENEEVADRAYTGREFDD----LPLAEQREACRRACCFARVEPSHKSKIVEY 690
Query: 580 LQARKHICGMTGDGVNDAPALKKXXXXXXXXXXXXXXXXXXXXVLTEPGLSVIISAVLTS 639
LQ+ I MTGDGVNDAPALKK VL + S I++AV
Sbjct: 691 LQSYDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEEG 750
Query: 640 RAIFQRMKNYTIYAVSITI-RIVLGFMLLALIWKFDFPPFMVLIIAILNDG 689
RAI+ MK + Y +S + +V F+ AL P +L + ++ DG
Sbjct: 751 RAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDG 801
Score = 93.6 bits (231), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 113/224 (50%), Gaps = 25/224 (11%)
Query: 152 LVPGDIISVKLGDIIPADARLL--EGDPLKIDQSALTGESLPVTK-------------GP 196
+VPGDI+ V +GD +PAD R+L + L++DQS LTGES+ V K
Sbjct: 145 IVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDK 204
Query: 197 GDSVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQ-QGHFQKVLTAIGN-----F 250
+ ++SG+ G+ +V TGV T GK + +T Q + Q+ L G
Sbjct: 205 KNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVI 264
Query: 251 CICSIAVGMIVEIIVMYPIQHRKYRPG----IDNLLVLLIGGIPIAMPTVLSVTMAIGSH 306
+ +AV +I P+ + G + L + IP +P V++ +A+G+
Sbjct: 265 SLICVAVWLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTR 324
Query: 307 RLSLQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLI 350
R++ + AI + + ++E + V+CSDKTGTLT N++SV K I
Sbjct: 325 RMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFI 368
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 100/337 (29%), Positives = 149/337 (44%), Gaps = 48/337 (14%)
Query: 427 KGAPEQIL---NLVRNKSE-------IERRVHAIIDKFA--ERGLRSLAVAYQEVPDGRK 474
KGAPE ++ N VR + ++ ++ ++I ++ LR LA+A ++ P R+
Sbjct: 514 KGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKRE 573
Query: 475 E----------SSGGPWQFIGLMPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKE 524
E F+G++ + DPPR + +I+ + G+ V MITGD A
Sbjct: 574 EMVLDDSTKFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIA 633
Query: 525 TGRRLGM-GTNM-YPSSALLGQNKDESIVALPVDELIE---KADGFAGVFPEHKYEIVKR 579
RR+G+ G N A G+ D+ LP+ E E +A FA V P HK +IV+
Sbjct: 634 ICRRIGIFGENEDVADRAYTGREFDD----LPLAEQREACRRACCFARVEPTHKSKIVEY 689
Query: 580 LQARKHICGMTGDGVNDAPALKKXXXXXXXXXXXXXXXXXXXXVLTEPGLSVIISAVLTS 639
LQ+ I MTGDGVNDAPALKK VL + S I++AV
Sbjct: 690 LQSFDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEEG 749
Query: 640 RAIFQRMKNYTIYAVSITI-RIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTI---- 694
RAI+ MK + Y +S + +V F+ AL P +L + ++ DG T
Sbjct: 750 RAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFN 809
Query: 695 --------SKDRVKPSPLPDSWKLAEIFTTGVILGGY 723
R PL W +F + +GGY
Sbjct: 810 PPDLDIMDRPPRTPKEPLISGW----LFFRYMAIGGY 842
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 113/224 (50%), Gaps = 25/224 (11%)
Query: 152 LVPGDIISVKLGDIIPADARLL--EGDPLKIDQSALTGESLPVTK-------------GP 196
+VPGDI+ V +GD +PAD R+L + L++DQS LTGES+ V K
Sbjct: 145 IVPGDIVEVAVGDKVPADIRILTIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDK 204
Query: 197 GDSVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQ-QGHFQKVLTAIGN-----F 250
+ ++SG+ G+ +V TGV T GK + +T Q + Q+ L G
Sbjct: 205 KNMLFSGTNIAAGKAIGIVATTGVGTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVI 264
Query: 251 CICSIAVGMIVEIIVMYPIQHRKYRPG----IDNLLVLLIGGIPIAMPTVLSVTMAIGSH 306
+ +AV +I P+ + G + L + IP +P V++ +A+G+
Sbjct: 265 SLICVAVWLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTR 324
Query: 307 RLSLQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLI 350
R++ + AI + + ++E + V+CSDKTGTLT N++SV K I
Sbjct: 325 RMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFI 368
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 130/532 (24%), Positives = 213/532 (40%), Gaps = 95/532 (17%)
Query: 138 VLRDGKWMEEDAAILVPGDIISVKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGPG 197
V+RDGK + + GDI+ V+ G+ IP D ++EG+ +D+S ++GE +PV K G
Sbjct: 137 VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-VDESMISGEPVPVLKSKG 195
Query: 198 DSVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLV-DSTNQQGHFQKVLTAIGNFCICSIA 256
D V+ + G ++ G T + LV D+ + Q++ + + I ++
Sbjct: 196 DEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFIPTVL 255
Query: 257 VGMIVEIIVMYPIQHRKYRPGIDNLLVLLIGGIP----IAMPTVLSVTMAIGSHRLSLQG 312
+ I I Y I H L+ +L+ P +A PT L+V M G+ G
Sbjct: 256 LVAISAFIYWYFIAHAPLLFAFTTLIAVLVVACPCAFGLATPTALTVGMGKGAE----LG 311
Query: 313 AITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEIFAKGVDADAVVLMAARASRV 372
+ K A+E + + DKTGTLT K V +L+ + D ++ +AA A R
Sbjct: 312 ILIKNADALEVAEKVTAVIFDKTGTLTKGKPEV-TDLVPLNG---DERELLRLAAIAER- 366
Query: 373 ENQDAIDAAIVGMLADPKEARANIQEVHFLPFNPTDKRTALTYIDSEGKMHRVSKGAPEQ 432
++ I AIV + AL + G+ +V A E
Sbjct: 367 RSEHPIAEAIV--------------------------KKALEHGIELGEPEKVEVIAGEG 400
Query: 433 ILN---LVRNKSEIE-------RRVHAIIDKFAERGLRSLAVAYQEVPDGRKESSGGPWQ 482
++ LV NK +E V ++K ++ VA +GR E
Sbjct: 401 VVADGILVGNKRLMEDFGVAVSNEVELALEKLEREAKTAVIVAR----NGRVE------- 449
Query: 483 FIGLMPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSALL 542
G++ + D + + ++ +G+ V MITGD A+ R L +
Sbjct: 450 --GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL----------- 496
Query: 543 GQNKDESIVALPVDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKK 602
+L+ A V P K E VK+LQA K + GDG+NDAPAL +
Sbjct: 497 --------------DLV-----IAEVLPHQKSEEVKKLQA-KEVVAFVGDGINDAPALAQ 536
Query: 603 XXXXXXXXXXXXXXXXXXXXVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAV 654
VL L +++A+ SR ++K +A+
Sbjct: 537 ADLGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWAL 588
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 130/532 (24%), Positives = 213/532 (40%), Gaps = 95/532 (17%)
Query: 138 VLRDGKWMEEDAAILVPGDIISVKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGPG 197
V+RDGK + + GDI+ V+ G+ IP D ++EG+ +D+S ++GE +PV K G
Sbjct: 215 VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-VDESMISGEPVPVLKSKG 273
Query: 198 DSVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLV-DSTNQQGHFQKVLTAIGNFCICSIA 256
D V+ + G ++ G T + LV D+ + Q++ + + I ++
Sbjct: 274 DEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFIPTVL 333
Query: 257 VGMIVEIIVMYPIQHRKYRPGIDNLLVLLIGGIP----IAMPTVLSVTMAIGSHRLSLQG 312
+ I I Y I H L+ +L+ P +A PT L+V M G+ G
Sbjct: 334 LVAISAFIYWYFIAHAPLLFAFTTLIAVLVVACPCAFGLATPTALTVGMGKGAE----LG 389
Query: 313 AITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEIFAKGVDADAVVLMAARASRV 372
+ K A+E + + DKTGTLT K V +L+ + D ++ +AA A R
Sbjct: 390 ILIKNADALEVAEKVTAVIFDKTGTLTKGKPEV-TDLVPLNG---DERELLRLAAIAER- 444
Query: 373 ENQDAIDAAIVGMLADPKEARANIQEVHFLPFNPTDKRTALTYIDSEGKMHRVSKGAPEQ 432
++ I AIV + AL + G+ +V A E
Sbjct: 445 RSEHPIAEAIV--------------------------KKALEHGIELGEPEKVEVIAGEG 478
Query: 433 ILN---LVRNKSEIE-------RRVHAIIDKFAERGLRSLAVAYQEVPDGRKESSGGPWQ 482
++ LV NK +E V ++K ++ VA +GR E
Sbjct: 479 VVADGILVGNKRLMEDFGVAVSNEVELALEKLEREAKTAVIVAR----NGRVE------- 527
Query: 483 FIGLMPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSALL 542
G++ + D + + ++ +G+ V MITGD A+ R L +
Sbjct: 528 --GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL----------- 574
Query: 543 GQNKDESIVALPVDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKK 602
+L+ A V P K E VK+LQA K + GDG+NDAPAL +
Sbjct: 575 --------------DLV-----IAEVLPHQKSEEVKKLQA-KEVVAFVGDGINDAPALAQ 614
Query: 603 XXXXXXXXXXXXXXXXXXXXVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAV 654
VL L +++A+ SR ++K +A+
Sbjct: 615 ADLGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWAL 666
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 79.7 bits (195), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 105/470 (22%), Positives = 183/470 (38%), Gaps = 68/470 (14%)
Query: 137 KVLRDGKWMEEDAAILVPGDIISVKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGP 196
++ DG E + GD++ V+ G+ IP D + EG +D+S +TGE +PV K
Sbjct: 229 RIKEDGSEEEVSLDNVAVGDLLRVRPGEKIPVDGEVQEGRSF-VDESMVTGEPIPVAKEA 287
Query: 197 GDSVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLV-DSTNQQGHFQKVLTAIGNFCICSI 255
V + + G + G T + +V D+ + Q++ + + + ++
Sbjct: 288 SAKVIGATINQTGSFVMKALHVGSDTMLARIVQMVSDAQRSRAPIQRLADTVSGWFVPAV 347
Query: 256 AVGMIVEIIV---MYPIQHRKYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSLQG 312
+ ++ IV + P Y G+ + +LI P A+ +++ +G + + G
Sbjct: 348 ILVAVLSFIVWALLGPQPALSY--GLIAAVSVLIIACPCALGLATPMSIMVGVGKGAQSG 405
Query: 313 AITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEIFAKGVDADAVVLMAARASRV 372
+ K A+E M ++ L DKTGTLT + + + + F + + ++
Sbjct: 406 VLIKNAEALERMEKVNTLVVDKTGTLTEGHPKLTRIVTDDFVEDNALALAAALEHQSEHP 465
Query: 373 ENQDAIDAAIVGMLADPKEARANIQEVHFLPFNPTDKRTALTYIDSEGKMHRVSKGAPEQ 432
+ AA KE ++ V F + + +D H V+ G
Sbjct: 466 LANAIVHAA--------KEKGLSLGSVE--AFEAPTGKGVVGQVDG----HHVAIGN--- 508
Query: 433 ILNLVRNKSEIERRVHAIIDKFAERGLRSLAVAYQEVPDGRKESSGGPWQFIGLMPLFDP 492
R E + +K E + +V + V DG+ + L+ + DP
Sbjct: 509 ----ARLMQEHGGDNAPLFEKADELRGKGASVMFMAV-DGKT---------VALLVVEDP 554
Query: 493 PRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSALLGQNKDESIVA 552
+ + ETI G+ + M+TGD A+ LG
Sbjct: 555 IKSSTPETILELQQSGIEIVMLTGDSKRTAEAVAGTLG---------------------- 592
Query: 553 LPVDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKK 602
I+K A + PE K IV L+ + I M GDGVNDAPAL K
Sbjct: 593 ------IKKV--VAEIMPEDKSRIVSELKDKGLIVAMAGDGVNDAPALAK 634
>pdb|2KIJ|A Chain A, Solution Structure Of The Actuator Domain Of The Copper-
Transporting Atpase Atp7a
Length = 124
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 148 DAAILVPGDIISVKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGPGDSVYSGSTCK 207
D ++ GDII V G P D R++EG + +D+S +TGE++PV K PG +V +GS +
Sbjct: 38 DVELVQRGDIIKVVPGGKFPVDGRVIEGHSM-VDESLITGEAMPVAKKPGSTVIAGSINQ 96
Query: 208 QGEIEAVVIATGVHTFFGKAAHLVD 232
G + G T + LV+
Sbjct: 97 NGSLLICATHVGADTTLSQIVKLVE 121
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 51/116 (43%), Gaps = 31/116 (26%)
Query: 485 GLMPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSALLGQ 544
G++ L D R +S E I + +G+ M+TGD +AK LG+
Sbjct: 137 GVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGLD------------ 184
Query: 545 NKDESIVALPVDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPAL 600
D FA V P K E VK +Q +K++ M GDGVNDAPAL
Sbjct: 185 ------------------DYFAEVLPHEKAEKVKEVQ-QKYVTAMVGDGVNDAPAL 221
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 51/116 (43%), Gaps = 31/116 (26%)
Query: 485 GLMPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSALLGQ 544
G++ L D R +S E I + +G+ M+TGD +AK LG+
Sbjct: 137 GVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGLD------------ 184
Query: 545 NKDESIVALPVDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPAL 600
D FA V P K E VK +Q +K++ M GDGVNDAPAL
Sbjct: 185 ------------------DYFAEVLPHEKAEKVKEVQ-QKYVTAMVGDGVNDAPAL 221
>pdb|2HC8|A Chain A, Structure Of The A. Fulgidus Copa A-Domain
pdb|2VOY|F Chain F, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 113
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 138 VLRDGKWMEEDAAILVPGDIISVKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGPG 197
V+RDGK + + GDI+ V+ G+ IP D ++EG+ +D+S ++GE +PV K G
Sbjct: 16 VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-VDESMISGEPVPVLKSKG 74
Query: 198 DSVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVD 232
D V+ + G ++ G T + LV+
Sbjct: 75 DEVFGATINNTGVLKIRATRVGGETLLAQIVKLVE 109
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 31/163 (19%)
Query: 485 GLMPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSALLGQ 544
G++ + D + + ++ +G+ V MITGD A+ R L +
Sbjct: 156 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL------------- 202
Query: 545 NKDESIVALPVDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKXX 604
+L+ A V P K E VK+LQA K + GDG+NDAPAL +
Sbjct: 203 ------------DLV-----IAEVLPHQKSEEVKKLQA-KEVVAFVGDGINDAPALAQAD 244
Query: 605 XXXXXXXXXXXXXXXXXXVLTEPGLSVIISAVLTSRAIFQRMK 647
VL L +++A+ SR ++K
Sbjct: 245 LGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 31/163 (19%)
Query: 485 GLMPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSALLGQ 544
G++ + D + + ++ +G+ V MITGD A+ R L +
Sbjct: 156 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL------------- 202
Query: 545 NKDESIVALPVDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKXX 604
+L+ A V P K E VK+LQA K + GDG+NDAPAL +
Sbjct: 203 ------------DLV-----IAEVLPHQKSEEVKKLQA-KEVVAFVGDGINDAPALAQAD 244
Query: 605 XXXXXXXXXXXXXXXXXXVLTEPGLSVIISAVLTSRAIFQRMK 647
VL L +++A+ SR ++K
Sbjct: 245 LGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 565 FAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPAL 600
A V P K E VK+LQA K + GDG+NDAPAL
Sbjct: 65 IAEVLPHQKSEEVKKLQA-KEVVAFVGDGINDAPAL 99
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 565 FAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKXXXXXXXXXXXXXXXXXXXXVL 624
A V P K E VK+LQA K + GDG+NDAPAL + VL
Sbjct: 186 IAEVLPHQKSEEVKKLQA-KEVVAFVGDGINDAPALAQADLGIAVGSGSDVAVESGDIVL 244
Query: 625 TEPGLSVIISAVLTSR 640
L +++A+ SR
Sbjct: 245 IRDDLRDVVAAIQLSR 260
>pdb|3GWI|A Chain A, Crystal Structure Of Mg-Atpase Nucleotide Binding Domain
Length = 170
Score = 36.6 bits (83), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 10/84 (11%)
Query: 397 QEVHFLPFNPTDKRTALTYIDSEGKMHRVSKGAPEQILNL---VRNKSEIE-------RR 446
Q++ +PF+ +R ++ ++ V KGA ++ILN+ VR+ EI R+
Sbjct: 57 QKIDEIPFDFERRRMSVVVAENTEHHQLVCKGALQEILNVCSQVRHNGEIVPLDDIMLRK 116
Query: 447 VHAIIDKFAERGLRSLAVAYQEVP 470
+ + D +GLR +AVA + +P
Sbjct: 117 IKRVTDTLNRQGLRVVAVATKYLP 140
>pdb|1XAG|A Chain A, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate
pdb|1XAH|A Chain A, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+
And Nad+
pdb|1XAH|B Chain B, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+
And Nad+
pdb|1XAI|A Chain A, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate
pdb|1XAI|B Chain B, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate
pdb|1XAJ|A Chain A, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate
pdb|1XAJ|B Chain B, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate
pdb|1XAL|A Chain A, Crystal Structure Of Staphlyococcus Aureus
3-dehydroquinate Synthase (dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate (soak)
pdb|1XAL|B Chain B, Crystal Structure Of Staphlyococcus Aureus
3-dehydroquinate Synthase (dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate (soak)
Length = 354
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 11/83 (13%)
Query: 443 IERRVHAIIDKFAERGLRSL---------AVAY-QEVPDGRKESSGGPWQFIGLMPLFDP 492
IE ++ ++ E+G+R AV Y ++P G G +QFI LFD
Sbjct: 218 IETKLDIVVADEKEQGVRKFLNLGHTFGHAVEYYHKIPHGHAVMVGIIYQFIVANALFD- 276
Query: 493 PRHDSAETIRRALNLGVNVKMIT 515
+HD + I+ + LG + MIT
Sbjct: 277 SKHDISHYIQYLIQLGYPLDMIT 299
>pdb|3GDE|A Chain A, The Closed Conformation Of Atp-Dependent Dna Ligase From
Archaeoglobus Fulgidus
Length = 558
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 22/44 (50%)
Query: 464 VAYQEVPDGRKESSGGPWQFIGLMPLFDPPRHDSAETIRRALNL 507
VAYQE+ K SG +F + L D D A+TI R NL
Sbjct: 505 VAYQEIQKSPKYESGYALRFPRFVRLRDDKDVDEADTIERVENL 548
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,024,087
Number of Sequences: 62578
Number of extensions: 892524
Number of successful extensions: 2098
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1991
Number of HSP's gapped (non-prelim): 61
length of query: 875
length of database: 14,973,337
effective HSP length: 107
effective length of query: 768
effective length of database: 8,277,491
effective search space: 6357113088
effective search space used: 6357113088
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)