Query 002833
Match_columns 875
No_of_seqs 694 out of 3739
Neff 6.8
Searched_HMMs 46136
Date Thu Mar 28 11:42:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002833.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002833hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0065 Pleiotropic drug resis 100.0 8E-152 2E-156 1361.0 56.5 769 51-870 12-797 (1391)
2 PLN03140 ABC transporter G fam 100.0 5E-149 1E-153 1418.6 75.6 818 51-870 41-883 (1470)
3 TIGR00956 3a01205 Pleiotropic 100.0 2E-112 3E-117 1088.0 70.0 664 113-811 3-708 (1394)
4 TIGR00955 3a01204 The Eye Pigm 100.0 3E-100 5E-105 912.4 58.2 573 181-797 35-613 (617)
5 PLN03211 ABC transporter G-25; 100.0 9.4E-99 2E-103 900.0 62.9 609 133-797 35-658 (659)
6 KOG0061 Transporter, ABC super 100.0 2.2E-98 5E-103 888.5 54.4 585 133-798 21-609 (613)
7 PLN03140 ABC transporter G fam 100.0 1.1E-97 2E-102 948.3 62.2 599 131-799 861-1468(1470)
8 TIGR00956 3a01205 Pleiotropic 100.0 1.1E-90 2.4E-95 887.0 61.5 563 183-797 775-1390(1394)
9 KOG0065 Pleiotropic drug resis 100.0 5E-92 1.1E-96 845.3 35.3 563 182-797 802-1383(1391)
10 COG1126 GlnQ ABC-type polar am 100.0 1.4E-46 3.1E-51 378.8 18.6 222 182-455 13-239 (240)
11 COG1135 AbcC ABC-type metal io 100.0 9.8E-45 2.1E-49 382.4 19.4 224 183-457 18-247 (339)
12 COG1131 CcmA ABC-type multidru 100.0 2.9E-44 6.4E-49 392.1 23.2 221 175-438 9-231 (293)
13 COG3839 MalK ABC-type sugar tr 100.0 1.3E-44 2.9E-49 394.9 20.4 226 175-452 8-234 (338)
14 COG3842 PotA ABC-type spermidi 100.0 3.9E-44 8.4E-49 393.2 18.6 223 183-455 17-240 (352)
15 COG1120 FepC ABC-type cobalami 100.0 1.4E-43 3E-48 373.7 16.7 211 183-432 14-227 (258)
16 COG1125 OpuBA ABC-type proline 100.0 5E-43 1.1E-47 359.4 19.0 208 183-433 13-225 (309)
17 COG3638 ABC-type phosphate/pho 100.0 5.4E-43 1.2E-47 357.1 18.0 227 172-433 5-237 (258)
18 COG1118 CysA ABC-type sulfate/ 100.0 1.2E-42 2.7E-47 365.6 19.8 224 182-454 13-240 (345)
19 COG1136 SalX ABC-type antimicr 100.0 3.6E-42 7.7E-47 356.4 21.8 195 184-422 18-220 (226)
20 COG1116 TauB ABC-type nitrate/ 100.0 2.2E-42 4.7E-47 358.3 19.7 195 184-423 16-212 (248)
21 COG1127 Ttg2A ABC-type transpo 100.0 3.2E-42 6.9E-47 352.3 18.8 209 182-432 19-234 (263)
22 COG4555 NatA ABC-type Na+ tran 100.0 2.2E-42 4.8E-47 343.8 16.7 217 173-433 4-222 (245)
23 PRK11650 ugpC glycerol-3-phosp 100.0 1E-41 2.2E-46 381.6 23.4 207 183-432 16-223 (356)
24 TIGR03265 PhnT2 putative 2-ami 100.0 1.9E-41 4.1E-46 379.0 23.2 218 184-452 17-235 (353)
25 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 2E-41 4.3E-46 355.6 21.1 207 185-432 18-226 (254)
26 PRK11432 fbpC ferric transport 100.0 3E-41 6.5E-46 376.8 23.4 218 184-452 19-237 (351)
27 TIGR02314 ABC_MetN D-methionin 100.0 4.3E-41 9.4E-46 374.0 24.0 205 184-431 18-228 (343)
28 TIGR03258 PhnT 2-aminoethylpho 100.0 6.2E-41 1.3E-45 375.5 23.4 206 184-432 18-227 (362)
29 PRK09452 potA putrescine/sperm 100.0 7.9E-41 1.7E-45 376.1 23.5 219 184-453 27-246 (375)
30 PRK13537 nodulation ABC transp 100.0 1.6E-40 3.4E-45 365.5 22.9 207 183-433 19-227 (306)
31 COG1117 PstB ABC-type phosphat 100.0 5.9E-41 1.3E-45 336.7 16.9 224 182-453 18-249 (253)
32 PRK11607 potG putrescine trans 100.0 2.3E-40 5E-45 372.9 23.3 218 184-452 32-250 (377)
33 TIGR01186 proV glycine betaine 100.0 4.3E-40 9.2E-45 368.1 25.0 208 182-432 4-218 (363)
34 PRK10851 sulfate/thiosulfate t 100.0 3E-40 6.5E-45 369.3 23.6 222 184-452 15-237 (353)
35 COG2884 FtsE Predicted ATPase 100.0 2.2E-40 4.7E-45 327.1 19.4 209 175-427 6-220 (223)
36 cd03261 ABC_Org_Solvent_Resist 100.0 4.7E-40 1E-44 348.5 23.4 206 184-431 13-224 (235)
37 COG3840 ThiQ ABC-type thiamine 100.0 2.3E-40 5.1E-45 324.3 18.2 201 189-432 17-218 (231)
38 PRK11000 maltose/maltodextrin 100.0 5.2E-40 1.1E-44 369.9 23.6 206 184-432 16-222 (369)
39 COG2274 SunT ABC-type bacterio 100.0 7.2E-40 1.6E-44 390.9 25.9 258 97-433 436-696 (709)
40 TIGR01188 drrA daunorubicin re 100.0 8E-40 1.7E-44 359.6 23.5 207 183-433 5-213 (302)
41 COG1122 CbiO ABC-type cobalt t 100.0 4.9E-40 1.1E-44 346.1 19.6 207 184-433 17-228 (235)
42 cd03259 ABC_Carb_Solutes_like 100.0 1.4E-39 3E-44 339.7 22.0 200 184-426 13-213 (213)
43 PRK11153 metN DL-methionine tr 100.0 1.7E-39 3.6E-44 362.7 23.6 206 184-432 18-229 (343)
44 COG0410 LivF ABC-type branched 100.0 1.5E-39 3.2E-44 332.2 20.9 208 181-432 13-225 (237)
45 PRK13536 nodulation factor exp 100.0 2.1E-39 4.6E-44 360.8 23.5 207 183-433 53-261 (340)
46 COG0411 LivG ABC-type branched 100.0 5.2E-40 1.1E-44 338.0 17.1 222 180-432 13-238 (250)
47 cd03265 ABC_DrrA DrrA is the A 100.0 2.5E-39 5.5E-44 339.5 22.2 205 184-431 13-219 (220)
48 PRK13637 cbiO cobalt transport 100.0 3.9E-39 8.5E-44 351.6 24.4 218 184-444 20-248 (287)
49 COG1124 DppF ABC-type dipeptid 100.0 1.4E-39 3E-44 334.5 19.1 204 185-433 21-231 (252)
50 cd03258 ABC_MetN_methionine_tr 100.0 3.6E-39 7.8E-44 341.1 22.7 204 185-431 19-228 (233)
51 cd03296 ABC_CysA_sulfate_impor 100.0 4.8E-39 1.1E-43 341.6 23.4 209 184-431 15-224 (239)
52 COG1137 YhbG ABC-type (unclass 100.0 2.6E-40 5.6E-45 328.7 12.4 215 175-432 9-227 (243)
53 cd03301 ABC_MalK_N The N-termi 100.0 4.5E-39 9.7E-44 335.7 22.4 200 184-426 13-213 (213)
54 cd03219 ABC_Mj1267_LivG_branch 100.0 4.8E-39 1E-43 340.7 22.9 214 184-431 13-230 (236)
55 cd03293 ABC_NrtD_SsuB_transpor 100.0 5.7E-39 1.2E-43 336.8 23.2 201 184-429 17-219 (220)
56 cd03256 ABC_PhnC_transporter A 100.0 5.7E-39 1.2E-43 341.1 23.1 213 184-431 14-232 (241)
57 TIGR01288 nodI ATP-binding ABC 100.0 5E-39 1.1E-43 353.4 23.0 206 184-433 17-224 (303)
58 PRK13634 cbiO cobalt transport 100.0 6.1E-39 1.3E-43 350.6 23.3 219 184-445 20-250 (290)
59 cd03218 ABC_YhbG The ABC trans 100.0 7.1E-39 1.5E-43 338.5 22.9 205 183-431 12-220 (232)
60 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1.1E-38 2.4E-43 345.0 24.6 208 182-432 35-249 (269)
61 TIGR00960 3a0501s02 Type II (G 100.0 2.9E-39 6.4E-44 337.9 19.4 195 184-422 16-216 (216)
62 KOG0058 Peptide exporter, ABC 100.0 5.2E-39 1.1E-43 370.7 23.2 209 183-433 480-691 (716)
63 cd03263 ABC_subfamily_A The AB 100.0 6E-39 1.3E-43 336.4 21.6 203 184-431 15-219 (220)
64 PRK13647 cbiO cobalt transport 100.0 8.9E-39 1.9E-43 346.6 23.7 216 184-443 18-239 (274)
65 cd03295 ABC_OpuCA_Osmoprotecti 100.0 9.8E-39 2.1E-43 339.9 23.2 205 184-431 14-223 (242)
66 PRK13643 cbiO cobalt transport 100.0 1.1E-38 2.3E-43 348.3 24.0 224 185-452 20-255 (288)
67 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 5.7E-39 1.2E-43 336.1 20.3 195 184-422 17-218 (218)
68 TIGR02315 ABC_phnC phosphonate 100.0 8E-39 1.7E-43 340.5 21.7 214 183-431 14-233 (243)
69 PRK13650 cbiO cobalt transport 100.0 1.1E-38 2.4E-43 346.7 23.0 217 184-444 20-243 (279)
70 TIGR03522 GldA_ABC_ATP gliding 100.0 1.1E-38 2.3E-43 350.5 22.6 206 183-433 14-221 (301)
71 cd03224 ABC_TM1139_LivF_branch 100.0 1.5E-38 3.2E-43 333.7 22.3 203 184-432 13-220 (222)
72 PRK11629 lolD lipoprotein tran 100.0 1.9E-38 4E-43 335.9 23.1 201 184-428 22-229 (233)
73 cd03269 ABC_putative_ATPase Th 100.0 1E-38 2.3E-43 332.4 20.2 198 184-426 13-210 (210)
74 cd03268 ABC_BcrA_bacitracin_re 100.0 1.2E-38 2.7E-43 331.3 20.4 195 184-426 13-208 (208)
75 PRK10070 glycine betaine trans 100.0 3.3E-38 7.1E-43 356.8 25.5 207 183-432 40-253 (400)
76 cd03226 ABC_cobalt_CbiO_domain 100.0 1.4E-38 3.1E-43 330.2 20.8 192 184-423 13-205 (205)
77 PRK11831 putative ABC transpor 100.0 2.3E-38 5E-43 342.4 23.2 206 184-431 20-231 (269)
78 cd03260 ABC_PstB_phosphate_tra 100.0 1.7E-38 3.6E-43 334.8 21.2 204 184-430 13-226 (227)
79 PRK11174 cysteine/glutathione 100.0 6.3E-38 1.4E-42 374.4 28.6 207 184-433 363-572 (588)
80 cd03234 ABCG_White The White s 100.0 4E-38 8.6E-43 331.9 23.3 203 184-426 20-226 (226)
81 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 4.1E-38 8.8E-43 333.9 23.1 205 184-432 14-220 (236)
82 cd03266 ABC_NatA_sodium_export 100.0 2.4E-38 5.3E-43 331.3 21.0 198 185-426 19-218 (218)
83 TIGR01257 rim_protein retinal- 100.0 3E-36 6.5E-41 387.4 44.5 220 171-435 929-1151(2272)
84 PRK13635 cbiO cobalt transport 100.0 4.2E-38 9.2E-43 342.1 23.5 217 184-444 20-243 (279)
85 PRK15079 oligopeptide ABC tran 100.0 3.8E-38 8.2E-43 349.7 23.5 208 184-432 34-250 (331)
86 PRK13636 cbiO cobalt transport 100.0 3.1E-38 6.8E-43 343.8 22.2 218 184-444 19-245 (283)
87 PRK09536 btuD corrinoid ABC tr 100.0 3.2E-38 6.8E-43 357.2 23.0 209 183-431 15-226 (402)
88 PRK11264 putative amino-acid A 100.0 5.1E-38 1.1E-42 335.8 23.0 204 184-431 16-231 (250)
89 cd03292 ABC_FtsE_transporter F 100.0 2.9E-38 6.4E-43 329.6 20.5 195 184-422 14-214 (214)
90 PRK13652 cbiO cobalt transport 100.0 8.3E-38 1.8E-42 339.5 24.6 206 184-432 17-226 (277)
91 TIGR02673 FtsE cell division A 100.0 3.3E-38 7.1E-43 329.4 20.5 194 184-421 15-214 (214)
92 PRK13631 cbiO cobalt transport 100.0 5.7E-38 1.2E-42 346.9 23.6 219 184-447 39-282 (320)
93 PRK09493 glnQ glutamine ABC tr 100.0 5.5E-38 1.2E-42 333.7 22.5 205 184-432 14-224 (240)
94 TIGR03415 ABC_choXWV_ATP choli 100.0 5.7E-38 1.2E-42 352.6 23.8 208 182-432 35-253 (382)
95 KOG0057 Mitochondrial Fe/S clu 100.0 4.8E-38 1E-42 351.6 22.6 229 129-433 343-574 (591)
96 PRK13651 cobalt transporter AT 100.0 4.8E-38 1E-42 345.4 22.3 217 184-444 20-268 (305)
97 PRK13646 cbiO cobalt transport 100.0 7.8E-38 1.7E-42 341.2 23.7 205 184-432 20-234 (286)
98 PRK13644 cbiO cobalt transport 100.0 9.1E-38 2E-42 338.7 23.8 204 184-432 15-223 (274)
99 TIGR02211 LolD_lipo_ex lipopro 100.0 5.9E-38 1.3E-42 329.1 21.7 196 184-423 18-220 (221)
100 cd03257 ABC_NikE_OppD_transpor 100.0 9.4E-38 2E-42 328.8 23.2 201 185-426 19-228 (228)
101 PRK11248 tauB taurine transpor 100.0 8.2E-38 1.8E-42 335.6 22.6 201 184-429 14-216 (255)
102 TIGR03410 urea_trans_UrtE urea 100.0 7.9E-38 1.7E-42 330.3 21.9 202 184-431 13-219 (230)
103 PRK10895 lipopolysaccharide AB 100.0 8.5E-38 1.8E-42 332.4 21.9 205 184-431 16-224 (241)
104 PRK13648 cbiO cobalt transport 100.0 1.7E-37 3.6E-42 335.8 24.0 216 184-443 22-244 (269)
105 PRK13639 cbiO cobalt transport 100.0 1.6E-37 3.4E-42 337.0 23.8 216 184-443 15-239 (275)
106 PRK11247 ssuB aliphatic sulfon 100.0 9.3E-38 2E-42 335.4 21.7 195 184-429 25-219 (257)
107 PRK13633 cobalt transporter AT 100.0 1E-37 2.3E-42 339.3 22.4 217 184-444 23-247 (280)
108 PRK11614 livF leucine/isoleuci 100.0 8.6E-38 1.9E-42 331.6 21.0 203 184-432 18-225 (237)
109 PRK13548 hmuV hemin importer A 100.0 1.3E-37 2.8E-42 334.7 22.5 206 184-432 15-229 (258)
110 PRK09473 oppD oligopeptide tra 100.0 1.9E-37 4.2E-42 344.1 24.4 213 184-432 29-250 (330)
111 PRK10908 cell division protein 100.0 1.1E-37 2.4E-42 327.5 21.1 196 184-423 15-216 (222)
112 TIGR03411 urea_trans_UrtD urea 100.0 1.5E-37 3.2E-42 330.6 22.3 211 184-431 15-229 (242)
113 cd03264 ABC_drug_resistance_li 100.0 7.8E-38 1.7E-42 326.0 19.7 197 184-426 13-211 (211)
114 PRK11300 livG leucine/isoleuci 100.0 1.4E-37 3.1E-42 333.3 22.2 220 184-431 18-241 (255)
115 PRK11144 modC molybdate transp 100.0 1.6E-37 3.5E-42 347.9 23.5 207 189-452 16-229 (352)
116 PRK13632 cbiO cobalt transport 100.0 1.9E-37 4E-42 335.8 23.1 205 184-432 22-230 (271)
117 TIGR03005 ectoine_ehuA ectoine 100.0 2.5E-37 5.4E-42 331.1 23.7 205 184-431 13-234 (252)
118 COG1132 MdlB ABC-type multidru 100.0 3.2E-37 7E-42 366.8 27.2 209 183-433 341-552 (567)
119 PRK13641 cbiO cobalt transport 100.0 1.7E-37 3.8E-42 338.7 22.7 205 184-432 20-233 (287)
120 TIGR02769 nickel_nikE nickel i 100.0 2E-37 4.3E-42 334.4 22.7 207 183-432 23-239 (265)
121 cd03300 ABC_PotA_N PotA is an 100.0 2.8E-37 6.1E-42 326.8 23.2 205 184-431 13-218 (232)
122 TIGR03740 galliderm_ABC gallid 100.0 2.5E-37 5.4E-42 325.0 22.6 197 184-429 13-209 (223)
123 cd03267 ABC_NatA_like Similar 100.0 2.5E-37 5.4E-42 328.1 22.7 202 182-426 32-236 (236)
124 TIGR00972 3a0107s01c2 phosphat 100.0 2.5E-37 5.4E-42 330.1 22.9 206 184-431 14-230 (247)
125 KOG0055 Multidrug/pheromone ex 100.0 1.7E-35 3.7E-40 358.6 41.4 209 183-433 365-576 (1228)
126 PRK10584 putative ABC transpor 100.0 2.3E-37 5E-42 326.3 22.2 197 185-425 24-227 (228)
127 PRK11308 dppF dipeptide transp 100.0 3.4E-37 7.4E-42 341.7 24.6 207 184-432 28-243 (327)
128 cd03298 ABC_ThiQ_thiamine_tran 100.0 2.1E-37 4.6E-42 322.7 21.6 195 189-426 16-211 (211)
129 PRK13640 cbiO cobalt transport 100.0 2.5E-37 5.5E-42 336.6 23.1 208 184-432 20-231 (282)
130 PRK13649 cbiO cobalt transport 100.0 4E-37 8.6E-42 334.7 24.6 205 184-432 20-233 (280)
131 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 6E-37 1.3E-41 372.1 28.9 204 184-432 466-672 (686)
132 TIGR02770 nickel_nikD nickel i 100.0 3.2E-37 7E-42 325.9 23.2 204 186-432 1-214 (230)
133 PRK13638 cbiO cobalt transport 100.0 3.6E-37 7.8E-42 333.5 23.9 205 184-432 14-224 (271)
134 COG4988 CydD ABC-type transpor 100.0 3.1E-37 6.6E-42 350.3 24.2 210 180-432 330-542 (559)
135 PRK11022 dppD dipeptide transp 100.0 4.6E-37 1E-41 340.7 25.0 210 184-432 20-242 (326)
136 TIGR01184 ntrCD nitrate transp 100.0 3E-37 6.4E-42 326.3 22.3 202 187-431 1-202 (230)
137 PRK14268 phosphate ABC transpo 100.0 3.4E-37 7.3E-42 331.3 22.9 205 184-431 25-240 (258)
138 PRK10771 thiQ thiamine transpo 100.0 3.9E-37 8.4E-42 325.6 22.7 201 189-432 17-218 (232)
139 cd03233 ABC_PDR_domain1 The pl 100.0 7.1E-37 1.5E-41 317.2 24.0 182 183-426 19-202 (202)
140 PRK14273 phosphate ABC transpo 100.0 2.9E-37 6.4E-42 330.9 21.8 207 184-432 20-237 (254)
141 cd03225 ABC_cobalt_CbiO_domain 100.0 2.6E-37 5.6E-42 322.0 20.8 194 184-421 14-211 (211)
142 TIGR02142 modC_ABC molybdenum 100.0 4.6E-37 9.9E-42 344.6 24.3 199 189-432 15-220 (354)
143 PRK14250 phosphate ABC transpo 100.0 3.6E-37 7.8E-42 327.9 22.2 200 184-431 16-219 (241)
144 cd03299 ABC_ModC_like Archeal 100.0 5.6E-37 1.2E-41 325.2 23.5 204 186-432 14-218 (235)
145 PRK10619 histidine/lysine/argi 100.0 3.5E-37 7.5E-42 331.0 22.0 204 184-431 18-239 (257)
146 PRK14247 phosphate ABC transpo 100.0 5.3E-37 1.2E-41 328.1 22.9 209 184-432 16-233 (250)
147 TIGR01978 sufC FeS assembly AT 100.0 6.1E-37 1.3E-41 325.9 22.9 213 184-432 13-233 (243)
148 PRK10253 iron-enterobactin tra 100.0 3.9E-37 8.4E-42 332.2 21.7 209 184-432 20-232 (265)
149 PRK11124 artP arginine transpo 100.0 3.6E-37 7.8E-42 327.8 21.0 204 184-431 15-228 (242)
150 cd03235 ABC_Metallic_Cations A 100.0 2.9E-37 6.2E-42 322.2 19.8 200 184-426 12-213 (213)
151 PRK10575 iron-hydroxamate tran 100.0 4.6E-37 9.9E-42 331.6 21.8 209 184-431 24-235 (265)
152 PRK14242 phosphate transporter 100.0 6.3E-37 1.4E-41 328.1 22.7 210 184-431 19-235 (253)
153 TIGR01277 thiQ thiamine ABC tr 100.0 8.9E-37 1.9E-41 318.8 23.2 199 186-427 13-212 (213)
154 PRK09984 phosphonate/organopho 100.0 4E-37 8.7E-42 331.4 21.2 216 184-431 17-240 (262)
155 PRK15112 antimicrobial peptide 100.0 5.3E-37 1.1E-41 331.5 22.2 207 184-432 26-238 (267)
156 PRK13645 cbiO cobalt transport 100.0 7.2E-37 1.6E-41 334.1 23.4 205 185-432 25-239 (289)
157 TIGR00968 3a0106s01 sulfate AB 100.0 8.4E-37 1.8E-41 324.2 22.9 206 184-432 13-219 (237)
158 PRK14267 phosphate ABC transpo 100.0 4.7E-37 1E-41 329.0 21.1 209 184-432 17-236 (253)
159 COG4175 ProV ABC-type proline/ 100.0 1.9E-37 4.1E-42 326.5 17.5 221 184-455 41-268 (386)
160 PRK11176 lipid transporter ATP 100.0 1.5E-36 3.2E-41 362.3 27.3 208 184-432 356-566 (582)
161 cd03262 ABC_HisP_GlnQ_permease 100.0 3.9E-37 8.4E-42 321.0 19.4 195 184-422 13-213 (213)
162 PRK11231 fecE iron-dicitrate t 100.0 4.8E-37 1E-41 329.6 20.5 208 184-431 15-225 (255)
163 PRK10418 nikD nickel transport 100.0 1.8E-36 3.8E-41 325.1 24.0 207 184-432 16-229 (254)
164 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.3E-36 2.8E-41 370.7 25.9 206 184-433 492-700 (710)
165 PRK13642 cbiO cobalt transport 100.0 1.7E-36 3.7E-41 329.2 23.8 216 184-443 20-242 (277)
166 TIGR03375 type_I_sec_LssB type 100.0 2.5E-36 5.4E-41 367.2 27.9 208 184-433 478-688 (694)
167 TIGR03873 F420-0_ABC_ATP propo 100.0 1.3E-36 2.9E-41 326.3 22.3 208 184-431 14-224 (256)
168 PRK14270 phosphate ABC transpo 100.0 1.8E-36 4E-41 324.2 23.2 206 184-431 17-233 (251)
169 TIGR01193 bacteriocin_ABC ABC- 100.0 2.3E-36 5E-41 368.2 27.1 208 184-433 487-697 (708)
170 PRK14256 phosphate ABC transpo 100.0 2.5E-36 5.3E-41 323.4 23.9 207 184-431 17-234 (252)
171 PRK14239 phosphate transporter 100.0 2.3E-36 5.1E-41 323.4 23.6 206 184-431 18-234 (252)
172 PRK15093 antimicrobial peptide 100.0 1.4E-36 3E-41 337.6 22.7 215 184-432 20-247 (330)
173 PRK11701 phnK phosphonate C-P 100.0 2.2E-36 4.7E-41 325.0 23.2 206 184-431 19-239 (258)
174 PRK14245 phosphate ABC transpo 100.0 1.7E-36 3.7E-41 324.3 22.2 210 184-432 16-233 (250)
175 PRK14235 phosphate transporter 100.0 2.2E-36 4.8E-41 326.6 23.0 207 184-431 32-249 (267)
176 PRK10790 putative multidrug tr 100.0 5.9E-36 1.3E-40 357.8 28.9 206 184-432 354-562 (592)
177 COG0444 DppD ABC-type dipeptid 100.0 2.8E-36 6.1E-41 322.8 23.3 233 183-458 17-260 (316)
178 PRK14241 phosphate transporter 100.0 2E-36 4.3E-41 325.3 22.2 208 184-432 17-241 (258)
179 PRK14269 phosphate ABC transpo 100.0 2.7E-36 5.8E-41 322.0 23.1 211 184-431 15-228 (246)
180 PRK14274 phosphate ABC transpo 100.0 2.5E-36 5.4E-41 324.7 22.6 206 184-431 25-241 (259)
181 COG4987 CydC ABC-type transpor 100.0 1.1E-36 2.5E-41 340.4 20.6 217 175-433 341-561 (573)
182 PRK11160 cysteine/glutathione 100.0 6.6E-36 1.4E-40 355.7 28.3 207 184-433 353-562 (574)
183 PRK14237 phosphate transporter 100.0 1.2E-35 2.7E-40 320.8 27.5 210 184-431 33-249 (267)
184 cd03297 ABC_ModC_molybdenum_tr 100.0 3.8E-36 8.3E-41 314.1 22.5 192 189-426 16-214 (214)
185 COG4559 ABC-type hemin transpo 100.0 1.8E-36 3.8E-41 303.8 19.0 208 183-432 13-229 (259)
186 PRK10744 pstB phosphate transp 100.0 7E-36 1.5E-40 321.5 24.9 207 184-432 26-243 (260)
187 PRK13547 hmuV hemin importer A 100.0 2.5E-36 5.4E-41 326.9 21.5 212 184-431 14-242 (272)
188 PRK14240 phosphate transporter 100.0 4.4E-36 9.5E-41 321.0 23.0 206 184-431 16-232 (250)
189 TIGR00958 3a01208 Conjugate Tr 100.0 8.3E-36 1.8E-40 362.8 28.1 206 184-433 494-702 (711)
190 KOG0056 Heavy metal exporter H 100.0 5.6E-37 1.2E-41 335.4 15.8 256 98-433 503-761 (790)
191 COG4525 TauB ABC-type taurine 100.0 2.7E-36 5.8E-41 298.6 19.0 206 184-434 18-225 (259)
192 PRK10419 nikE nickel transport 100.0 3.6E-36 7.8E-41 325.2 21.8 206 184-432 25-240 (268)
193 cd03252 ABCC_Hemolysin The ABC 100.0 5.3E-36 1.2E-40 317.8 22.5 205 184-432 15-224 (237)
194 PRK14272 phosphate ABC transpo 100.0 7.2E-36 1.6E-40 319.6 23.2 208 184-432 17-235 (252)
195 PRK14275 phosphate ABC transpo 100.0 2.3E-36 5E-41 329.6 19.6 207 184-432 52-269 (286)
196 PRK14259 phosphate ABC transpo 100.0 4E-36 8.8E-41 325.0 21.3 205 184-432 26-252 (269)
197 PRK14248 phosphate ABC transpo 100.0 7.1E-36 1.5E-40 322.9 22.9 206 184-431 34-250 (268)
198 PRK14262 phosphate ABC transpo 100.0 6E-36 1.3E-40 320.0 22.1 211 184-432 16-233 (250)
199 PRK10762 D-ribose transporter 100.0 3.4E-36 7.3E-41 352.9 21.6 208 184-431 17-228 (501)
200 PRK14249 phosphate ABC transpo 100.0 8.4E-36 1.8E-40 319.1 22.6 210 184-431 17-233 (251)
201 PRK14251 phosphate ABC transpo 100.0 7.2E-36 1.6E-40 319.5 22.1 206 184-431 17-233 (251)
202 KOG0055 Multidrug/pheromone ex 100.0 7.1E-36 1.5E-40 361.9 24.6 210 182-433 1001-1213(1228)
203 PRK13549 xylose transporter AT 100.0 3.7E-36 8.1E-41 352.9 21.7 210 183-431 17-230 (506)
204 COG1123 ATPase components of v 100.0 1E-35 2.2E-40 339.3 24.4 213 184-433 22-244 (539)
205 PRK14246 phosphate ABC transpo 100.0 1.2E-35 2.7E-40 319.1 23.8 222 169-432 9-240 (257)
206 PRK14253 phosphate ABC transpo 100.0 9.3E-36 2E-40 318.3 22.7 206 184-431 16-231 (249)
207 PRK10261 glutathione transport 100.0 8.3E-36 1.8E-40 357.5 24.8 207 184-432 337-552 (623)
208 PRK14244 phosphate ABC transpo 100.0 1.1E-35 2.4E-40 318.2 23.0 211 184-431 18-235 (251)
209 PRK14257 phosphate ABC transpo 100.0 1.1E-35 2.4E-40 329.8 23.7 211 184-432 95-312 (329)
210 PRK15439 autoinducer 2 ABC tra 100.0 5.2E-36 1.1E-40 351.9 22.4 200 184-431 24-227 (510)
211 TIGR02982 heterocyst_DevA ABC 100.0 6.9E-36 1.5E-40 313.6 21.0 196 184-422 18-219 (220)
212 TIGR02323 CP_lyasePhnK phospho 100.0 8E-36 1.7E-40 319.5 21.9 207 184-432 16-237 (253)
213 PRK14258 phosphate ABC transpo 100.0 1.3E-35 2.9E-40 319.5 23.7 213 184-432 20-244 (261)
214 COG4181 Predicted ABC-type tra 100.0 5.4E-36 1.2E-40 290.8 18.3 200 181-424 20-226 (228)
215 PRK14255 phosphate ABC transpo 100.0 1.6E-35 3.6E-40 316.9 24.0 206 184-431 18-234 (252)
216 PRK03695 vitamin B12-transport 100.0 1.6E-35 3.5E-40 316.6 23.3 200 186-431 11-220 (248)
217 PRK14236 phosphate transporter 100.0 1.5E-35 3.2E-40 321.1 23.2 210 184-431 38-254 (272)
218 TIGR02203 MsbA_lipidA lipid A 100.0 2.7E-35 5.8E-40 350.6 27.6 208 184-432 345-555 (571)
219 PRK13657 cyclic beta-1,2-gluca 100.0 3.5E-35 7.6E-40 350.8 28.7 207 184-432 348-557 (588)
220 TIGR03608 L_ocin_972_ABC putat 100.0 1.2E-35 2.5E-40 308.3 21.3 189 184-417 11-206 (206)
221 PRK14271 phosphate ABC transpo 100.0 1.6E-35 3.5E-40 321.4 23.3 226 183-454 33-264 (276)
222 COG4618 ArpD ABC-type protease 100.0 1.3E-35 2.8E-40 329.0 22.8 237 127-436 324-563 (580)
223 cd03245 ABCC_bacteriocin_expor 100.0 5.7E-36 1.2E-40 313.8 19.0 195 184-426 17-220 (220)
224 PRK09700 D-allose transporter 100.0 6.2E-36 1.3E-40 351.4 21.5 211 184-431 18-232 (510)
225 PRK14260 phosphate ABC transpo 100.0 1.7E-35 3.6E-40 318.4 23.1 206 184-431 20-241 (259)
226 TIGR01842 type_I_sec_PrtD type 100.0 4E-35 8.7E-40 347.1 28.5 208 184-432 331-541 (544)
227 PRK14265 phosphate ABC transpo 100.0 3.9E-35 8.5E-40 318.1 25.8 205 184-432 33-257 (274)
228 PRK14261 phosphate ABC transpo 100.0 1.9E-35 4.2E-40 316.7 23.1 210 184-431 19-235 (253)
229 cd03251 ABCC_MsbA MsbA is an e 100.0 1.7E-35 3.7E-40 313.2 22.3 205 185-433 16-225 (234)
230 cd03213 ABCG_EPDR ABCG transpo 100.0 1.2E-35 2.5E-40 306.1 20.5 171 184-426 22-194 (194)
231 TIGR01846 type_I_sec_HlyB type 100.0 3.6E-35 7.9E-40 356.9 28.1 208 184-433 470-680 (694)
232 PRK14263 phosphate ABC transpo 100.0 2.4E-35 5.1E-40 317.6 23.2 211 182-432 19-244 (261)
233 PRK10789 putative multidrug tr 100.0 4.8E-35 1E-39 348.1 28.2 207 184-432 328-537 (569)
234 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 9.5E-36 2.1E-40 316.0 19.3 206 184-433 16-226 (238)
235 COG4152 ABC-type uncharacteriz 100.0 6E-36 1.3E-40 305.5 16.9 211 180-435 11-221 (300)
236 PRK10247 putative ABC transpor 100.0 1.3E-35 2.9E-40 312.7 20.1 199 184-429 20-223 (225)
237 cd03254 ABCC_Glucan_exporter_l 100.0 2.2E-35 4.7E-40 311.3 21.8 205 184-432 16-225 (229)
238 COG4148 ModC ABC-type molybdat 100.0 3.2E-36 6.8E-41 312.5 14.9 195 189-432 16-217 (352)
239 PRK14238 phosphate transporter 100.0 2.3E-35 5.1E-40 319.4 22.4 206 184-431 37-253 (271)
240 PRK15056 manganese/iron transp 100.0 1.5E-35 3.3E-40 321.0 20.9 206 184-431 20-228 (272)
241 PRK15134 microcin C ABC transp 100.0 2.2E-35 4.8E-40 348.2 23.7 207 184-432 299-514 (529)
242 TIGR01192 chvA glucan exporter 100.0 1.2E-34 2.7E-39 345.5 29.1 208 184-433 348-558 (585)
243 PTZ00265 multidrug resistance 100.0 4.8E-35 1E-39 376.1 27.2 212 184-432 1181-1451(1466)
244 TIGR01257 rim_protein retinal- 100.0 1.5E-35 3.3E-40 380.9 22.2 222 171-436 1938-2162(2272)
245 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 4.4E-35 9.4E-40 308.6 21.9 192 182-426 33-224 (224)
246 PRK14254 phosphate ABC transpo 100.0 4.1E-35 8.9E-40 319.6 22.4 204 184-431 52-267 (285)
247 PRK14243 phosphate transporter 100.0 3.7E-35 7.9E-40 316.7 21.7 205 184-432 23-247 (264)
248 cd03232 ABC_PDR_domain2 The pl 100.0 3E-35 6.4E-40 302.6 19.9 170 184-426 20-192 (192)
249 COG1123 ATPase components of v 100.0 2.8E-35 6.1E-40 335.7 21.5 208 183-431 303-517 (539)
250 CHL00131 ycf16 sulfate ABC tra 100.0 7E-35 1.5E-39 312.0 23.4 212 184-431 20-239 (252)
251 cd03253 ABCC_ATM1_transporter 100.0 6.9E-35 1.5E-39 308.9 22.4 205 184-432 14-223 (236)
252 PRK15134 microcin C ABC transp 100.0 4E-35 8.7E-40 346.0 22.6 209 184-432 22-245 (529)
253 PRK10982 galactose/methyl gala 100.0 5.1E-35 1.1E-39 342.1 23.1 207 183-431 10-221 (491)
254 PRK10261 glutathione transport 100.0 2.8E-35 6.1E-40 352.9 21.3 205 184-431 29-256 (623)
255 PRK13543 cytochrome c biogenes 100.0 6.5E-35 1.4E-39 305.1 21.2 189 184-419 24-212 (214)
256 TIGR02204 MsbA_rel ABC transpo 100.0 1.7E-34 3.8E-39 344.0 27.7 207 184-432 353-562 (576)
257 PRK14266 phosphate ABC transpo 100.0 1.1E-34 2.4E-39 310.2 23.2 210 184-431 16-232 (250)
258 TIGR02633 xylG D-xylose ABC tr 100.0 5.1E-35 1.1E-39 342.9 22.0 209 184-430 14-227 (500)
259 TIGR01187 potA spermidine/putr 100.0 6.8E-35 1.5E-39 323.5 21.7 188 202-432 1-189 (325)
260 TIGR03269 met_CoM_red_A2 methy 100.0 6.6E-35 1.4E-39 343.5 22.9 219 170-432 279-516 (520)
261 TIGR03269 met_CoM_red_A2 methy 100.0 6.4E-35 1.4E-39 343.6 22.7 208 184-434 13-259 (520)
262 PRK09580 sufC cysteine desulfu 100.0 1.5E-34 3.2E-39 308.6 23.4 220 184-440 14-241 (248)
263 PRK13546 teichoic acids export 100.0 6.1E-34 1.3E-38 306.9 28.0 198 182-433 35-232 (264)
264 PRK09544 znuC high-affinity zi 100.0 8.3E-35 1.8E-39 311.6 20.9 189 184-431 17-207 (251)
265 PRK13538 cytochrome c biogenes 100.0 7.2E-35 1.6E-39 302.4 19.6 187 184-417 14-202 (204)
266 cd03289 ABCC_CFTR2 The CFTR su 100.0 6.3E-35 1.4E-39 316.0 19.9 199 184-433 17-225 (275)
267 cd03231 ABC_CcmA_heme_exporter 100.0 1.2E-34 2.7E-39 300.1 20.4 184 184-417 13-198 (201)
268 TIGR01166 cbiO cobalt transpor 100.0 1.1E-34 2.3E-39 297.6 19.7 179 183-404 4-188 (190)
269 PRK11288 araG L-arabinose tran 100.0 1.1E-34 2.3E-39 340.2 22.2 203 184-427 17-223 (501)
270 PRK13549 xylose transporter AT 100.0 1.3E-34 2.8E-39 339.9 22.4 221 170-431 259-492 (506)
271 PRK14252 phosphate ABC transpo 100.0 1.9E-34 4.2E-39 311.2 21.9 206 184-431 29-247 (265)
272 PRK09700 D-allose transporter 100.0 1.4E-34 3.1E-39 339.9 22.5 220 171-428 266-493 (510)
273 PRK13545 tagH teichoic acids e 100.0 4.1E-34 8.8E-39 327.5 25.2 197 184-434 37-233 (549)
274 cd03217 ABC_FeS_Assembly ABC-t 100.0 1.9E-34 4.2E-39 298.4 20.5 180 184-439 13-199 (200)
275 cd03244 ABCC_MRP_domain2 Domai 100.0 1E-34 2.3E-39 304.5 18.7 199 184-427 17-220 (221)
276 cd03215 ABC_Carb_Monos_II This 100.0 1.2E-34 2.7E-39 295.5 18.6 161 186-422 15-182 (182)
277 cd03230 ABC_DR_subfamily_A Thi 100.0 1.6E-34 3.4E-39 292.3 19.0 159 184-422 13-173 (173)
278 TIGR01189 ccmA heme ABC export 100.0 2E-34 4.4E-39 297.6 19.8 183 184-416 13-197 (198)
279 TIGR02868 CydC thiol reductant 100.0 2.7E-34 5.8E-39 339.1 23.6 178 185-403 349-529 (529)
280 PRK13539 cytochrome c biogenes 100.0 1.9E-34 4E-39 300.1 19.0 186 184-419 15-200 (207)
281 cd03288 ABCC_SUR2 The SUR doma 100.0 2.2E-34 4.7E-39 309.4 19.9 204 184-432 34-242 (257)
282 PRK14264 phosphate ABC transpo 100.0 3.2E-34 7E-39 315.5 21.6 222 184-431 58-287 (305)
283 TIGR02324 CP_lyasePhnL phospho 100.0 2.4E-34 5.1E-39 302.6 19.6 191 184-418 21-223 (224)
284 TIGR03771 anch_rpt_ABC anchore 100.0 3.8E-34 8.2E-39 301.2 20.9 197 192-431 1-199 (223)
285 cd03229 ABC_Class3 This class 100.0 3.1E-34 6.7E-39 291.5 18.3 161 184-421 13-178 (178)
286 PLN03130 ABC transporter C fam 100.0 1.1E-33 2.3E-38 366.8 28.2 207 184-433 1252-1461(1622)
287 PRK15177 Vi polysaccharide exp 100.0 7.3E-34 1.6E-38 297.1 21.5 195 185-437 1-196 (213)
288 COG4598 HisP ABC-type histidin 100.0 1.9E-34 4.1E-39 281.8 15.6 221 180-452 15-252 (256)
289 PRK10938 putative molybdenum t 100.0 2.4E-34 5.2E-39 336.4 19.1 197 184-432 16-223 (490)
290 COG4161 ArtP ABC-type arginine 100.0 3E-34 6.5E-39 275.8 16.2 206 182-430 13-227 (242)
291 cd03248 ABCC_TAP TAP, the Tran 100.0 1.6E-34 3.6E-39 304.2 15.9 195 184-422 27-226 (226)
292 PLN03232 ABC transporter C fam 100.0 9E-34 1.9E-38 367.1 26.1 206 184-432 1249-1457(1495)
293 PRK10762 D-ribose transporter 100.0 7.8E-34 1.7E-38 332.9 23.1 209 185-431 266-482 (501)
294 cd03369 ABCC_NFT1 Domain 2 of 100.0 7.4E-34 1.6E-38 295.4 19.6 184 184-428 21-207 (207)
295 TIGR02633 xylG D-xylose ABC tr 100.0 7E-34 1.5E-38 333.3 21.8 221 170-429 257-488 (500)
296 COG4604 CeuD ABC-type enteroch 100.0 7.5E-35 1.6E-39 288.9 11.4 210 182-432 12-224 (252)
297 PRK11288 araG L-arabinose tran 100.0 6.1E-34 1.3E-38 333.9 21.1 209 185-431 267-483 (501)
298 cd03291 ABCC_CFTR1 The CFTR su 100.0 7.1E-33 1.5E-37 301.0 27.9 195 185-432 51-246 (282)
299 cd03237 ABC_RNaseL_inhibitor_d 100.0 3.3E-33 7.1E-38 298.3 23.7 191 185-431 8-205 (246)
300 cd03246 ABCC_Protease_Secretio 100.0 9.7E-34 2.1E-38 286.5 17.9 156 184-422 15-173 (173)
301 cd03290 ABCC_SUR1_N The SUR do 100.0 1.9E-33 4.1E-38 294.6 20.7 194 179-421 9-218 (218)
302 TIGR02857 CydD thiol reductant 100.0 3.4E-33 7.3E-38 329.8 24.8 192 184-417 335-529 (529)
303 PRK13540 cytochrome c biogenes 100.0 1.1E-33 2.4E-38 292.6 18.1 181 184-414 14-196 (200)
304 COG1129 MglA ABC-type sugar tr 100.0 2.1E-33 4.5E-38 318.6 21.5 216 171-428 9-229 (500)
305 cd03247 ABCC_cytochrome_bd The 100.0 1E-33 2.2E-38 287.6 17.1 161 185-426 16-178 (178)
306 TIGR00957 MRP_assoc_pro multi 100.0 4.8E-33 1E-37 360.8 27.4 206 185-433 1300-1508(1522)
307 cd03214 ABC_Iron-Siderophores_ 100.0 9.9E-34 2.1E-38 288.3 16.4 166 184-426 12-180 (180)
308 PRK15439 autoinducer 2 ABC tra 100.0 2.6E-33 5.7E-38 329.0 21.9 205 186-431 278-490 (510)
309 cd03250 ABCC_MRP_domain1 Domai 100.0 2.3E-33 5E-38 291.0 18.6 185 185-421 19-204 (204)
310 PTZ00265 multidrug resistance 100.0 1.2E-32 2.7E-37 353.9 26.9 230 184-420 398-655 (1466)
311 COG4619 ABC-type uncharacteriz 100.0 1.6E-33 3.6E-38 272.8 12.9 195 182-422 14-212 (223)
312 PRK10522 multidrug transporter 100.0 2.5E-32 5.5E-37 323.4 26.0 190 184-425 336-530 (547)
313 PTZ00243 ABC transporter; Prov 100.0 6.9E-33 1.5E-37 358.8 22.9 207 184-433 1323-1533(1560)
314 PRK11819 putative ABC transpor 100.0 2.7E-32 5.8E-37 323.6 24.3 221 183-432 19-249 (556)
315 PRK10535 macrolide transporter 100.0 1.8E-32 3.9E-37 329.9 23.1 204 184-432 21-231 (648)
316 cd03228 ABCC_MRP_Like The MRP 100.0 1E-32 2.2E-37 278.6 17.5 153 185-421 16-171 (171)
317 COG5265 ATM1 ABC-type transpor 100.0 5.8E-33 1.3E-37 302.0 16.7 212 180-433 272-486 (497)
318 PRK13541 cytochrome c biogenes 100.0 1.5E-32 3.3E-37 283.0 18.2 178 185-414 15-192 (195)
319 COG4172 ABC-type uncharacteriz 100.0 4.6E-32 1E-36 293.0 22.3 210 182-432 298-515 (534)
320 PRK10982 galactose/methyl gala 100.0 2.3E-32 5E-37 319.8 21.4 207 184-429 261-476 (491)
321 COG0396 sufC Cysteine desulfur 100.0 4.4E-32 9.4E-37 276.3 20.4 219 184-442 17-242 (251)
322 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 7.5E-32 1.6E-36 319.6 25.6 222 184-433 18-248 (552)
323 cd03223 ABCD_peroxisomal_ALDP 100.0 3E-32 6.4E-37 274.0 18.8 151 184-421 14-164 (166)
324 PRK15064 ABC transporter ATP-b 100.0 3.2E-32 7E-37 321.4 22.1 225 184-433 14-242 (530)
325 COG4586 ABC-type uncharacteriz 100.0 8E-33 1.7E-37 286.8 14.4 215 179-436 32-249 (325)
326 cd03216 ABC_Carb_Monos_I This 100.0 4.6E-32 9.9E-37 271.8 18.8 146 184-424 13-162 (163)
327 PRK15064 ABC transporter ATP-b 100.0 3.9E-32 8.5E-37 320.7 21.1 200 171-431 320-523 (530)
328 TIGR01271 CFTR_protein cystic 100.0 1.2E-31 2.6E-36 346.9 25.6 205 184-432 1232-1439(1490)
329 PRK13409 putative ATPase RIL; 100.0 5.1E-32 1.1E-36 321.4 19.3 184 186-428 354-537 (590)
330 COG4674 Uncharacterized ABC-ty 100.0 3E-32 6.5E-37 270.0 14.2 213 183-432 17-234 (249)
331 COG3845 ABC-type uncharacteriz 100.0 9.5E-32 2.1E-36 299.2 19.5 212 174-427 8-223 (501)
332 PRK10938 putative molybdenum t 100.0 6.7E-32 1.5E-36 315.8 18.5 217 170-426 260-485 (490)
333 TIGR01194 cyc_pep_trnsptr cycl 100.0 1.3E-31 2.9E-36 317.7 19.5 192 184-425 355-551 (555)
334 cd03236 ABC_RNaseL_inhibitor_d 100.0 1.4E-31 3.1E-36 287.0 17.4 191 184-426 14-220 (255)
335 PRK11819 putative ABC transpor 100.0 2.8E-31 6.2E-36 314.8 21.6 202 171-430 325-530 (556)
336 COG1119 ModF ABC-type molybden 100.0 1.3E-31 2.8E-36 276.0 16.1 209 182-427 42-256 (257)
337 COG1101 PhnK ABC-type uncharac 100.0 2.2E-31 4.8E-36 267.8 16.5 208 181-425 16-230 (263)
338 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 4.2E-31 9.1E-36 313.2 21.5 202 171-430 323-528 (552)
339 PLN03232 ABC transporter C fam 100.0 1.8E-30 3.9E-35 336.5 27.8 197 184-432 630-827 (1495)
340 PLN03130 ABC transporter C fam 100.0 2.6E-30 5.6E-35 335.4 27.9 196 184-432 630-827 (1622)
341 COG4608 AppF ABC-type oligopep 100.0 1.1E-30 2.4E-35 274.5 17.7 172 184-432 26-198 (268)
342 PRK10636 putative ABC transpor 100.0 1.5E-30 3.3E-35 312.6 20.5 201 171-433 313-517 (638)
343 COG4172 ABC-type uncharacteriz 100.0 4.1E-30 8.9E-35 277.9 20.7 214 182-431 21-245 (534)
344 KOG0059 Lipid exporter ABCA1 a 100.0 9.7E-31 2.1E-35 323.5 17.6 207 186-436 580-790 (885)
345 PRK11147 ABC transporter ATPas 100.0 3.7E-30 8E-35 309.6 20.7 204 170-431 319-526 (635)
346 PLN03073 ABC transporter F fam 100.0 7.2E-30 1.6E-34 308.3 22.1 205 171-434 509-715 (718)
347 TIGR00954 3a01203 Peroxysomal 100.0 7.9E-30 1.7E-34 307.4 20.3 186 183-419 464-653 (659)
348 COG4133 CcmA ABC-type transpor 100.0 5.7E-30 1.2E-34 253.5 15.3 179 182-406 13-193 (209)
349 PRK10636 putative ABC transpor 100.0 3E-29 6.5E-34 301.4 24.7 216 183-431 13-234 (638)
350 cd03238 ABC_UvrA The excision 100.0 2.1E-29 4.5E-34 255.2 19.6 157 183-422 7-166 (176)
351 cd03222 ABC_RNaseL_inhibitor T 100.0 1.4E-29 2.9E-34 256.8 17.6 148 183-431 12-161 (177)
352 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 1.1E-29 2.4E-34 249.5 16.3 132 184-421 13-144 (144)
353 COG4167 SapF ABC-type antimicr 100.0 3.4E-29 7.4E-34 245.5 19.6 208 183-432 25-238 (267)
354 COG4136 ABC-type uncharacteriz 100.0 5.1E-30 1.1E-34 244.2 12.2 181 183-403 14-195 (213)
355 COG1134 TagH ABC-type polysacc 100.0 1.3E-28 2.8E-33 254.2 23.5 206 180-438 36-241 (249)
356 PRK11147 ABC transporter ATPas 100.0 7.3E-29 1.6E-33 298.4 25.1 222 183-432 15-242 (635)
357 TIGR01271 CFTR_protein cystic 100.0 3.3E-29 7.2E-34 324.3 22.5 196 184-432 439-635 (1490)
358 TIGR00957 MRP_assoc_pro multi 100.0 3.4E-29 7.5E-34 325.0 22.2 197 184-432 651-849 (1522)
359 PRK13409 putative ATPase RIL; 100.0 1.1E-29 2.4E-34 301.4 15.9 187 179-420 82-287 (590)
360 COG4107 PhnK ABC-type phosphon 100.0 1.1E-28 2.4E-33 240.1 13.6 205 183-433 18-241 (258)
361 cd00267 ABC_ATPase ABC (ATP-bi 100.0 3.9E-28 8.3E-33 241.6 17.5 143 184-421 12-157 (157)
362 PTZ00243 ABC transporter; Prov 100.0 1E-27 2.2E-32 310.9 24.5 197 183-432 672-869 (1560)
363 KOG0054 Multidrug resistance-a 100.0 3.8E-27 8.2E-32 292.5 25.0 196 184-432 534-730 (1381)
364 PF00005 ABC_tran: ABC transpo 100.0 3E-28 6.6E-33 235.9 11.4 134 187-371 1-137 (137)
365 COG0488 Uup ATPase components 99.9 4.6E-27 1E-31 273.1 22.1 220 182-431 14-238 (530)
366 KOG0054 Multidrug resistance-a 99.9 6.1E-27 1.3E-31 290.7 21.8 259 98-433 1101-1362(1381)
367 PLN03073 ABC transporter F fam 99.9 2E-27 4.3E-32 287.2 15.6 232 172-431 179-429 (718)
368 cd03270 ABC_UvrA_I The excisio 99.9 2.7E-26 5.9E-31 242.2 21.1 99 320-426 119-226 (226)
369 cd03271 ABC_UvrA_II The excisi 99.9 1.3E-25 2.9E-30 240.6 19.3 103 318-428 149-261 (261)
370 cd03278 ABC_SMC_barmotin Barmo 99.9 1.1E-25 2.3E-30 232.6 15.1 167 188-419 14-190 (197)
371 COG1129 MglA ABC-type sugar tr 99.9 3.5E-24 7.6E-29 243.6 19.5 205 186-429 274-486 (500)
372 COG0488 Uup ATPase components 99.9 3.9E-24 8.5E-29 248.7 20.3 201 170-432 321-524 (530)
373 COG4778 PhnL ABC-type phosphon 99.9 1.2E-24 2.6E-29 211.6 11.0 194 183-419 23-227 (235)
374 cd03272 ABC_SMC3_euk Eukaryoti 99.9 5.5E-24 1.2E-28 226.6 16.2 186 183-418 14-234 (243)
375 COG4138 BtuD ABC-type cobalami 99.9 1.7E-24 3.7E-29 211.4 5.4 197 186-432 14-220 (248)
376 cd03274 ABC_SMC4_euk Eukaryoti 99.9 2E-24 4.3E-29 225.7 5.0 186 182-419 15-204 (212)
377 cd03273 ABC_SMC2_euk Eukaryoti 99.9 2.3E-23 5E-28 223.2 11.9 178 197-418 25-242 (251)
378 cd03240 ABC_Rad50 The catalyti 99.9 8.8E-23 1.9E-27 212.1 13.7 167 189-419 15-197 (204)
379 cd03279 ABC_sbcCD SbcCD and ot 99.9 2.7E-22 5.9E-27 209.8 15.2 180 188-421 18-210 (213)
380 PRK00349 uvrA excinuclease ABC 99.9 2.4E-21 5.2E-26 238.1 22.6 120 318-454 810-939 (943)
381 COG4178 ABC-type uncharacteriz 99.9 1.9E-21 4.2E-26 225.3 19.1 181 184-418 406-587 (604)
382 PRK00635 excinuclease ABC subu 99.9 5.3E-21 1.1E-25 243.9 23.4 105 320-432 791-905 (1809)
383 COG3845 ABC-type uncharacteriz 99.9 2.8E-21 6E-26 216.0 16.7 223 171-430 258-489 (501)
384 COG4615 PvdE ABC-type sideroph 99.8 9.9E-22 2.1E-26 212.5 7.9 191 186-427 338-531 (546)
385 KOG0927 Predicted transporter 99.8 2.7E-20 5.9E-25 208.7 17.5 215 183-432 87-308 (614)
386 PF01061 ABC2_membrane: ABC-2 99.8 5.9E-22 1.3E-26 203.7 2.0 208 522-735 1-210 (210)
387 TIGR00630 uvra excinuclease AB 99.8 5.3E-20 1.2E-24 225.9 19.3 106 318-431 808-923 (924)
388 COG1245 Predicted ATPase, RNas 99.8 4.3E-20 9.3E-25 203.1 15.4 171 190-418 360-530 (591)
389 cd03276 ABC_SMC6_euk Eukaryoti 99.8 9.9E-20 2.1E-24 188.4 14.3 172 186-421 11-192 (198)
390 KOG0927 Predicted transporter 99.8 2.3E-20 5E-25 209.3 8.3 198 172-428 391-591 (614)
391 cd03275 ABC_SMC1_euk Eukaryoti 99.8 1.2E-19 2.5E-24 194.2 12.5 76 341-419 154-233 (247)
392 KOG2355 Predicted ABC-type tra 99.8 5.4E-19 1.2E-23 177.0 14.9 208 175-434 18-238 (291)
393 COG4170 SapD ABC-type antimicr 99.8 1.8E-19 4E-24 180.6 10.9 221 182-433 18-248 (330)
394 cd03280 ABC_MutS2 MutS2 homolo 99.8 6.2E-19 1.3E-23 182.7 10.8 81 342-426 91-172 (200)
395 KOG0066 eIF2-interacting prote 99.7 7.3E-18 1.6E-22 183.7 12.9 189 170-419 586-776 (807)
396 KOG0060 Long-chain acyl-CoA tr 99.7 5.2E-17 1.1E-21 183.8 19.1 189 183-419 447-641 (659)
397 cd03277 ABC_SMC5_euk Eukaryoti 99.7 1.9E-17 4.2E-22 173.3 14.5 81 340-421 124-211 (213)
398 KOG0062 ATPase component of AB 99.7 1.5E-17 3.2E-22 186.0 9.3 191 182-431 91-283 (582)
399 KOG0062 ATPase component of AB 99.7 3.5E-17 7.6E-22 183.1 12.2 194 173-424 365-559 (582)
400 COG1245 Predicted ATPase, RNas 99.7 2.8E-17 6E-22 181.2 10.9 95 317-419 193-288 (591)
401 cd03239 ABC_SMC_head The struc 99.7 3.7E-16 8.1E-21 159.1 15.6 74 343-419 95-172 (178)
402 COG2401 ABC-type ATPase fused 99.7 3.2E-16 7E-21 170.9 15.6 189 180-423 392-588 (593)
403 KOG0064 Peroxisomal long-chain 99.7 2.5E-16 5.4E-21 175.9 11.2 172 184-404 495-670 (728)
404 cd03285 ABC_MSH2_euk MutS2 hom 99.6 1.8E-16 4E-21 166.9 7.8 154 183-427 16-175 (222)
405 cd03241 ABC_RecN RecN ATPase i 99.6 2.3E-15 5E-20 163.8 15.9 76 342-421 170-249 (276)
406 cd03227 ABC_Class2 ABC-type Cl 99.6 7E-16 1.5E-20 154.6 10.7 74 343-419 78-155 (162)
407 cd03283 ABC_MutS-like MutS-lik 99.6 7.6E-16 1.6E-20 159.6 10.1 147 184-417 14-163 (199)
408 COG0178 UvrA Excinuclease ATPa 99.6 1.7E-14 3.7E-19 168.9 21.2 120 320-455 804-932 (935)
409 PRK00349 uvrA excinuclease ABC 99.6 1.3E-14 2.9E-19 179.0 16.7 104 321-432 472-584 (943)
410 TIGR00630 uvra excinuclease AB 99.6 2E-14 4.3E-19 177.1 17.3 104 321-432 470-582 (924)
411 cd03243 ABC_MutS_homologs The 99.6 5.5E-15 1.2E-19 153.4 9.9 84 343-430 92-176 (202)
412 cd03242 ABC_RecF RecF is a rec 99.6 6.9E-14 1.5E-18 151.8 17.0 77 340-422 181-269 (270)
413 KOG0066 eIF2-interacting prote 99.5 2.7E-14 5.9E-19 156.1 10.4 216 183-431 276-497 (807)
414 PRK00635 excinuclease ABC subu 99.5 1.7E-13 3.8E-18 176.0 16.5 103 321-431 459-570 (1809)
415 KOG0063 RNAse L inhibitor, ABC 99.5 1.7E-13 3.6E-18 150.4 12.9 182 180-418 345-531 (592)
416 TIGR01247 drrB daunorubicin re 99.5 4.7E-12 1E-16 134.3 23.0 229 530-791 1-234 (236)
417 cd03282 ABC_MSH4_euk MutS4 hom 99.5 8.6E-14 1.9E-18 144.7 8.5 136 183-403 15-151 (204)
418 cd03284 ABC_MutS1 MutS1 homolo 99.5 1.7E-13 3.7E-18 143.9 9.8 159 184-431 18-179 (216)
419 TIGR02858 spore_III_AA stage I 99.4 2.8E-13 6.1E-18 146.3 10.9 140 198-431 112-267 (270)
420 PF08370 PDR_assoc: Plant PDR 99.4 4E-13 8.6E-18 112.4 4.2 57 751-807 9-65 (65)
421 PRK00064 recF recombination pr 99.3 1.1E-10 2.3E-15 132.0 20.9 79 339-422 270-359 (361)
422 smart00534 MUTSac ATPase domai 99.3 3E-12 6.4E-17 131.3 7.4 81 342-425 61-142 (185)
423 cd00820 PEPCK_HprK Phosphoenol 99.3 4.6E-12 1E-16 117.5 6.0 74 184-269 2-78 (107)
424 TIGR03062 pip_yhgE_Cterm YhgE/ 99.3 1.4E-10 2.9E-15 120.8 16.7 148 615-795 58-205 (208)
425 TIGR01291 nodJ ABC-2 type tran 99.2 2.5E-09 5.4E-14 115.1 25.3 228 524-794 7-248 (253)
426 TIGR00025 Mtu_efflux ABC trans 99.2 1.6E-09 3.4E-14 114.9 22.9 216 536-794 2-229 (232)
427 TIGR03861 phenyl_ABC_PedC alco 99.2 8.4E-10 1.8E-14 118.5 20.3 206 521-730 1-217 (253)
428 cd03281 ABC_MSH5_euk MutS5 hom 99.2 1.2E-10 2.6E-15 122.1 12.8 58 346-403 94-154 (213)
429 PRK14079 recF recombination pr 99.2 4.9E-10 1.1E-14 126.1 17.4 77 342-427 263-348 (349)
430 PF02463 SMC_N: RecF/RecN/SMC 99.2 3.3E-11 7.1E-16 126.5 6.5 73 342-418 136-212 (220)
431 TIGR01069 mutS2 MutS2 family p 99.1 1.2E-10 2.7E-15 142.4 10.0 62 342-405 385-447 (771)
432 PRK07721 fliI flagellum-specif 99.1 1E-09 2.2E-14 126.0 16.7 173 183-430 145-340 (438)
433 PTZ00132 GTP-binding nuclear p 99.1 2.9E-10 6.2E-15 119.0 10.3 45 346-390 156-205 (215)
434 KOG0063 RNAse L inhibitor, ABC 99.1 2.4E-10 5.3E-15 125.9 8.2 95 317-419 193-288 (592)
435 cd03287 ABC_MSH3_euk MutS3 hom 99.1 1.2E-09 2.6E-14 115.1 12.9 134 184-404 18-155 (222)
436 PRK15066 inner membrane transp 99.0 8.2E-08 1.8E-12 103.5 26.7 238 520-794 6-250 (257)
437 TIGR00611 recf recF protein. A 99.0 4.8E-09 1E-13 118.6 15.7 59 341-403 274-341 (365)
438 PRK08533 flagellar accessory p 99.0 3.7E-09 8E-14 112.2 13.3 75 343-418 96-184 (230)
439 cd01124 KaiC KaiC is a circadi 99.0 7.2E-09 1.6E-13 105.5 13.2 77 341-418 70-163 (187)
440 TIGR00634 recN DNA repair prot 98.9 1.6E-09 3.4E-14 129.4 9.4 77 341-421 439-519 (563)
441 TIGR02788 VirB11 P-type DNA tr 98.9 3.2E-09 6.8E-14 117.6 10.1 144 187-432 134-280 (308)
442 cd03286 ABC_MSH6_euk MutS6 hom 98.9 3E-09 6.5E-14 111.8 9.4 134 184-403 17-153 (218)
443 cd01128 rho_factor Transcripti 98.9 6.7E-10 1.4E-14 118.9 4.3 86 329-422 117-211 (249)
444 PRK10869 recombination and rep 98.9 3E-09 6.5E-14 126.3 10.1 77 341-421 429-509 (553)
445 PRK00409 recombination and DNA 98.9 3E-09 6.4E-14 130.7 9.4 80 342-425 390-470 (782)
446 PHA02562 46 endonuclease subun 98.9 3.3E-09 7.2E-14 126.7 9.2 78 340-422 466-555 (562)
447 PRK13695 putative NTPase; Prov 98.8 3.9E-09 8.5E-14 106.9 6.1 78 342-426 78-157 (174)
448 PF13304 AAA_21: AAA domain; P 98.8 1.2E-08 2.6E-13 106.3 9.7 63 341-404 235-300 (303)
449 TIGR00618 sbcc exonuclease Sbc 98.8 1.1E-08 2.4E-13 130.6 11.0 80 339-420 947-1036(1042)
450 PRK06793 fliI flagellum-specif 98.8 1.5E-08 3.2E-13 115.9 10.7 157 183-428 143-306 (432)
451 PRK13830 conjugal transfer pro 98.8 1.5E-07 3.3E-12 116.9 18.9 79 357-440 649-736 (818)
452 cd01120 RecA-like_NTPases RecA 98.7 7.9E-08 1.7E-12 94.5 10.2 63 343-406 68-140 (165)
453 COG0842 ABC-type multidrug tra 98.7 2.3E-06 4.9E-11 91.7 21.8 151 617-796 131-282 (286)
454 PRK03918 chromosome segregatio 98.7 3.1E-08 6.6E-13 124.7 8.3 78 339-419 785-868 (880)
455 TIGR03238 dnd_assoc_3 dnd syst 98.7 2E-08 4.4E-13 114.6 5.5 52 184-240 19-71 (504)
456 cd01131 PilT Pilus retraction 98.6 1.2E-07 2.6E-12 98.3 10.5 57 352-418 66-122 (198)
457 COG0178 UvrA Excinuclease ATPa 98.6 3E-07 6.5E-12 109.1 14.0 92 339-433 478-577 (935)
458 COG3910 Predicted ATPase [Gene 98.6 2.5E-07 5.5E-12 92.9 11.1 63 340-404 127-189 (233)
459 PRK01156 chromosome segregatio 98.6 1.4E-07 3E-12 119.0 10.7 78 339-418 798-883 (895)
460 PRK06067 flagellar accessory p 98.6 6.6E-07 1.4E-11 95.1 14.0 76 343-419 101-187 (234)
461 PRK10246 exonuclease subunit S 98.6 1.3E-07 2.8E-12 120.6 9.0 78 338-418 945-1031(1047)
462 TIGR01248 drrC daunorubicin re 98.5 4E-07 8.6E-12 90.6 10.2 114 615-730 30-145 (152)
463 cd01130 VirB11-like_ATPase Typ 98.5 2.7E-07 5.8E-12 94.8 8.6 84 186-272 14-99 (186)
464 PRK07196 fliI flagellum-specif 98.5 8.8E-08 1.9E-12 109.6 4.9 90 182-272 141-239 (434)
465 PRK06995 flhF flagellar biosyn 98.5 7.3E-07 1.6E-11 103.5 11.6 71 185-275 244-314 (484)
466 cd01125 repA Hexameric Replica 98.4 1.5E-06 3.3E-11 92.7 12.2 46 357-403 108-159 (239)
467 TIGR02168 SMC_prok_B chromosom 98.4 2.8E-07 6.1E-12 119.1 7.9 76 339-418 1086-1165(1179)
468 TIGR00606 rad50 rad50. This fa 98.4 3.9E-07 8.5E-12 118.9 8.5 77 332-411 1191-1277(1311)
469 TIGR02169 SMC_prok_A chromosom 98.4 5.2E-07 1.1E-11 116.7 8.2 77 339-419 1071-1151(1164)
470 smart00382 AAA ATPases associa 98.4 1.3E-05 2.9E-10 75.5 15.3 59 343-401 61-124 (148)
471 PF06422 PDR_CDR: CDR ABC tran 98.3 4.2E-07 9E-12 84.4 4.6 62 751-814 29-91 (103)
472 TIGR01420 pilT_fam pilus retra 98.3 6.9E-06 1.5E-10 92.5 12.5 55 353-417 188-242 (343)
473 PRK02224 chromosome segregatio 98.3 2.1E-06 4.5E-11 108.4 9.2 77 340-419 779-868 (880)
474 PRK13891 conjugal transfer pro 98.2 2.8E-05 6E-10 97.4 18.7 70 353-424 680-752 (852)
475 TIGR02655 circ_KaiC circadian 98.2 5.7E-07 1.2E-11 105.7 2.5 80 323-418 101-190 (484)
476 TIGR01026 fliI_yscN ATPase Fli 98.2 5.9E-06 1.3E-10 95.4 10.6 52 182-237 149-200 (440)
477 PRK06002 fliI flagellum-specif 98.2 1.5E-06 3.3E-11 99.6 5.2 72 180-255 149-230 (450)
478 cd02023 UMPK Uridine monophosp 98.1 3.9E-06 8.5E-11 86.7 6.2 23 199-221 1-23 (198)
479 PRK09825 idnK D-gluconate kina 98.1 1.8E-06 4E-11 87.9 2.9 68 196-270 2-71 (176)
480 TIGR03518 ABC_perm_GldF glidin 98.1 0.00029 6.3E-09 75.5 19.3 193 525-728 2-208 (240)
481 TIGR03881 KaiC_arch_4 KaiC dom 98.0 2.2E-05 4.7E-10 83.0 8.9 33 186-218 8-41 (229)
482 PRK01889 GTPase RsgA; Reviewed 97.9 9.2E-06 2E-10 91.8 5.5 78 187-268 185-262 (356)
483 PF13555 AAA_29: P-loop contai 97.9 1.3E-05 2.7E-10 67.3 4.5 37 187-223 12-49 (62)
484 PRK05399 DNA mismatch repair p 97.9 3.5E-05 7.7E-10 96.3 10.6 69 341-413 665-738 (854)
485 PRK13898 type IV secretion sys 97.9 0.00047 1E-08 86.2 19.6 47 356-403 638-685 (800)
486 TIGR00416 sms DNA repair prote 97.8 3.1E-05 6.8E-10 90.2 7.6 63 359-421 169-247 (454)
487 PRK08149 ATP synthase SpaL; Va 97.8 1.4E-05 3E-10 91.7 4.0 70 183-253 138-214 (428)
488 cd01122 GP4d_helicase GP4d_hel 97.8 0.00069 1.5E-08 73.5 16.1 39 183-221 16-54 (271)
489 COG0419 SbcC ATPase involved i 97.7 8.1E-05 1.7E-09 94.3 9.9 86 331-419 802-897 (908)
490 PF12679 ABC2_membrane_2: ABC- 97.7 0.0036 7.7E-08 67.5 21.4 163 602-793 87-272 (277)
491 TIGR00235 udk uridine kinase. 97.7 1.2E-05 2.5E-10 84.0 1.9 29 195-223 4-32 (207)
492 PRK13764 ATPase; Provisional 97.7 0.00019 4.1E-09 85.6 12.1 64 357-428 321-400 (602)
493 PRK15176 Vi polysaccharide exp 97.7 0.0046 9.9E-08 67.2 21.8 55 674-731 170-224 (264)
494 COG1682 TagG ABC-type polysacc 97.7 0.0093 2E-07 64.8 24.0 202 519-730 15-219 (263)
495 PRK10416 signal recognition pa 97.7 2.5E-05 5.5E-10 86.9 4.3 72 195-269 112-192 (318)
496 PF12698 ABC2_membrane_3: ABC- 97.7 7.6E-06 1.6E-10 89.7 0.0 112 614-730 199-313 (344)
497 PF09818 ABC_ATPase: Predicted 97.7 0.00062 1.3E-08 77.4 15.0 94 326-422 308-416 (448)
498 cd01121 Sms Sms (bacterial rad 97.7 9.7E-05 2.1E-09 83.9 8.8 62 359-420 157-234 (372)
499 PRK10078 ribose 1,5-bisphospho 97.7 4.3E-05 9.3E-10 78.4 5.3 38 197-240 2-39 (186)
500 TIGR02680 conserved hypothetic 97.7 5.7E-05 1.2E-09 98.8 7.3 58 340-401 1245-1314(1353)
No 1
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7.9e-152 Score=1360.96 Aligned_cols=769 Identities=51% Similarity=0.896 Sum_probs=706.2
Q ss_pred cCchhhhHHHHHhhCCChhhhhhccccccccCCceeeEEeeecccchHhHHHHHHHHHHhhccChHHHHHHHhhhccccC
Q 002833 51 QDDEEELRWAAIERLPTYDRLKKGMLNQVLEDGKVVKHEVDVSNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVG 130 (875)
Q Consensus 51 ~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 130 (875)
+||||+|||||+|||||++| +++.+. .++ ++|+.+++..|+..++++..+..++|+++++.+++++.++.
T Consensus 12 ~~~e~~~~~a~~~~~pt~~~---~~~~~~-~~~-----~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~r~~~~~~- 81 (1391)
T KOG0065|consen 12 DEDEEALRWAAIERLPTFDR---SLLRSI-FES-----EVDVTKLDPDDDPKFIEKSSKHWEQDNEKLLEKLRERIDRV- 81 (1391)
T ss_pred chhHHHHHHHHHhcCccccc---hhhhhh-ccC-----cccccCCCcccchhHHHHhHHHHhhhHHHHHHHHHhhcCcc-
Confidence 46999999999999999999 666532 122 58999999999999999999999999999999999999988
Q ss_pred CCCCceEEEEeeeeEEEEeecccccccchhHHHHHHHHHHhhhccccCCcccccccccceeEEEeCCeEEEEEcCCCCCH
Q 002833 131 IEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGK 210 (875)
Q Consensus 131 ~~~p~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~IL~~vs~~i~pGe~~~llGpnGSGK 210 (875)
+.|.++++++++.+++++..| ||+.|...+.++..+...+.. ++...+||+|+||.++||||++++|||||||
T Consensus 82 -~~p~~~~~~~~~gv~a~~~~~----~t~~n~~~~~~~~~~~~~~~~--~~~~~~il~~~sg~~~pg~m~lvLG~pgsG~ 154 (1391)
T KOG0065|consen 82 -ELPTIEVRFSALGVEADVTYG----PTLVNILSNPLESILRMLGKR--KKKKIQILKDISGIIKPGEMTLVLGPPGSGK 154 (1391)
T ss_pred -cCCceEEEeeecccccccccc----hhhhhhhhhHHHHHhhhcccc--ccccceeecCcceeEcCCceEEEecCCCCch
Confidence 889999999999999988765 999999999888877766654 4456789999999999999999999999999
Q ss_pred HHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHH
Q 002833 211 TTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREK 290 (875)
Q Consensus 211 STLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~ 290 (875)
|||||+|+|.++......|+|+|||++.+++.+++.++|++|+|.|+|+|||+|||+|+++|++++.|++ +++|+|+
T Consensus 155 ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r~~---~~~R~e~ 231 (1391)
T KOG0065|consen 155 TTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYD---EVSRREK 231 (1391)
T ss_pred HHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCccccc---cccHHHH
Confidence 9999999999988777789999999999999889999999999999999999999999999999998875 6667766
Q ss_pred hcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCC
Q 002833 291 QAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEIS 370 (875)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPT 370 (875)
.+ ..+|++++++||+||+||+|||+++||+||||||||+||++++++++++||||+|
T Consensus 232 ~~-----------------------~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t 288 (1391)
T KOG0065|consen 232 LA-----------------------AMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEIT 288 (1391)
T ss_pred HH-----------------------HHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeeccc
Confidence 31 2689999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCeEEEecChhhHHHHHHHcCCCCCCCCCHHH
Q 002833 371 TGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVAD 450 (875)
Q Consensus 371 sGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~iv~~Gp~~~~~~~F~~~Gf~~p~~~~~ad 450 (875)
+|||++|+.+|+++||+++|..+.|++++++||+++++++||+|++|++|++||+||++++++||+++||.||+|+++||
T Consensus 289 ~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~AD 368 (1391)
T KOG0065|consen 289 RGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTAD 368 (1391)
T ss_pred ccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccchhhhHHHhhcCCCCccCChhhHHHHHhhchhhHhHHhhhcCCCCCCCCCCCCccccccCCcHHHHHHHHHHH
Q 002833 451 FLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAR 530 (875)
Q Consensus 451 fl~~v~s~~~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R 530 (875)
||+++++.+++.|||..++.|+.+.+++||+++|++|+.++++..+++.|+++++.|+.++..++|.+++|+|+++|++|
T Consensus 369 fLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c~~R 448 (1391)
T KOG0065|consen 369 FLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKACTIR 448 (1391)
T ss_pred HHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhchhHHHHHHHHHHHHHHHHHhhhccccCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhh
Q 002833 531 EWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRD 610 (875)
Q Consensus 531 ~~~~~~Rd~~~~~~r~~~~ii~ali~gt~F~~~~~~~~~~~~~~~~~g~lFf~~~~~~~~~~~el~~~~~~rpvf~kqr~ 610 (875)
+|++++||++++++++++.+++|+|+|++||++++ +++.+++.++|++||++++++|++++|+++++++||||+|||+
T Consensus 449 ~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~ 526 (1391)
T KOG0065|consen 449 EFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRD 526 (1391)
T ss_pred HHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhc
Confidence 99999999999999999999999999999999985 5667889999999999999999999999999999999999999
Q ss_pred cCccchHHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCcchHHHHHHHHHHHHHHHhHHHHHHHHhhcCCcHHHHHHHH
Q 002833 611 HLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLG 690 (875)
Q Consensus 611 ~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Y~m~Gl~~~~~~Ff~f~l~l~l~~~~~~~lf~~iaa~~~~~~~A~~~~ 690 (875)
..|||||||++|.+++++|++++++++|.+|+||++||.|+|++||+|||++|++++|++++||++|++++|+.+|+++|
T Consensus 527 ~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g 606 (1391)
T KOG0065|consen 527 LSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIG 606 (1391)
T ss_pred ccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccCCCCccchhhhhhhhCHHHHHHHHHHHHhhcCCccccCCCCCCC---------c---ccccccee
Q 002833 691 TFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSI---------N---QPTIGKVL 758 (875)
Q Consensus 691 ~~~~~~~~lf~Gf~i~~~~ip~w~~W~~~isP~~Ya~~al~~NEf~~~~~~~~~~~~~~---------~---~~~~G~~~ 758 (875)
++.++++.+++||+||+++||+||+|++||||++||||||++|||++++|+|.+.||+| | +.+.|.++
T Consensus 607 ~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~ 686 (1391)
T KOG0065|consen 607 GILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDY 686 (1391)
T ss_pred HHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhccccCceE
Confidence 99999999999999999999999999999999999999999999999999997545543 2 35789999
Q ss_pred ecccCcc-----ccCcchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcceeeccchhhhcccccccchhhhhccccc
Q 002833 759 LKIRGFS-----TESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGEKQRASGHEAEGMQMAVRSSSK 833 (875)
Q Consensus 759 L~~~g~~-----~~~~~~w~~~giL~g~~~~f~~l~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 833 (875)
|+.+||. +..+|+|+|+||++||+++|+++++++++|++|.+++++++++++++++........ +....
T Consensus 687 v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~-- 760 (1391)
T KOG0065|consen 687 VSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLKKSGAILVFKKGKEKKKVKSAGS----SSEIE-- 760 (1391)
T ss_pred EecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccccccceeeeccchhhhcchhccc----ccccc--
Confidence 9999988 888999999999999999999999999999999999999999998766432110000 00000
Q ss_pred cccccccccCCCcccCCCCceEEEeceEEEEcCCCCc
Q 002833 834 TVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAVS 870 (875)
Q Consensus 834 ~~~~~~~~~~~~~~l~f~p~~~tf~~v~Y~V~~p~~~ 870 (875)
...++....+++|++||+|.+++|+||+|+||+|-++
T Consensus 761 ~~~~s~~~~~~~~~~~~~~~~~~~~~V~~w~dl~~~~ 797 (1391)
T KOG0065|consen 761 KLDDSSHQEKNKMVLPFTPLSLTFKDVFYWVDLPYEM 797 (1391)
T ss_pred ccccccccccccccCCCccccccccceEEEEeCCccc
Confidence 0001111134588999999999999999999988544
No 2
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=4.7e-149 Score=1418.62 Aligned_cols=818 Identities=58% Similarity=1.004 Sum_probs=724.5
Q ss_pred cCchhhhHHHHHhhCCChhhhhhcccccc-ccCCcee---eEEeeecccchHhHHHHHHHHHHhhccChHHHHHHHhhhc
Q 002833 51 QDDEEELRWAAIERLPTYDRLKKGMLNQV-LEDGKVV---KHEVDVSNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRT 126 (875)
Q Consensus 51 ~~~~~~~~~~~~~~lp~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (875)
|||||+|+|||+||||||+|+|++++... +++|... ..++|+.+++.++++.+++++.++.++|+++++++++++.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 120 (1470)
T PLN03140 41 DEDEEALKWAAIEKLPTYSRLRTSIMKSFVENDVYGNQLLHKEVDVTKLDGNDRQKFIDMVFKVAEEDNEKFLKKFRNRI 120 (1470)
T ss_pred cCChHhhhhHHhhhCCchhhhhhhhhhcccccccccccccccccccccCChHHHHHHHHhhhcccchhHHHHHHHHHhhh
Confidence 78999999999999999999999999642 1111111 1148999999999999999999999999999999999999
Q ss_pred cccCCCCCceEEEEeeeeEEEEeecccccccchhHHHHHHHHHHhhhccccCCcccccccccceeEEEeCCeEEEEEcCC
Q 002833 127 DRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPP 206 (875)
Q Consensus 127 ~~~g~~~p~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~IL~~vs~~i~pGe~~~llGpn 206 (875)
+++|+++|+++|+|+||+|++++.++.+.+||++|.+.+.++.+....+...+++.+++||+||||.|+|||+++|+|||
T Consensus 121 ~~~~~~~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpn 200 (1470)
T PLN03140 121 DRVGIKLPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPP 200 (1470)
T ss_pred ccccCCCCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCC
Confidence 99999999999999999999998889999999999999988876655444333444678999999999999999999999
Q ss_pred CCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHHHHHHHhhhhcCCcchhHHHHHHH
Q 002833 207 GAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELS 286 (875)
Q Consensus 207 GSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~ 286 (875)
|||||||||+|+|+++++.+++|+|.|||+++++..+++.++||+|+|.|++++||+|||.|+++|++++.+.+++.+++
T Consensus 201 GSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~ 280 (1470)
T PLN03140 201 SSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELA 280 (1470)
T ss_pred CCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcC
Confidence 99999999999999988777899999999998877667889999999999999999999999999988776655566677
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEE
Q 002833 287 RREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYM 366 (875)
Q Consensus 287 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlL 366 (875)
++++++++.|+.+++.+|++...++.+.+..++++|+.+||++|+||.||++++|+|||||||||+||++|+++|+++||
T Consensus 281 ~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlll 360 (1470)
T PLN03140 281 RREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFM 360 (1470)
T ss_pred HHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEE
Confidence 88888888888889999999888887778889999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCeEEEecChhhHHHHHHHcCCCCCCCC
Q 002833 367 DEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERK 446 (875)
Q Consensus 367 DEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~iv~~Gp~~~~~~~F~~~Gf~~p~~~ 446 (875)
||||+|||+.++.++++.|+++++..|.|+|+++|||+++++++||+|++|++|+++|+||++++.+||+++||+||+++
T Consensus 361 DEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~ 440 (1470)
T PLN03140 361 DEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERK 440 (1470)
T ss_pred eCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCCCCC
Confidence 99999999999999999999999877899999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHhccchhhhHHHhhcCCCCccCChhhHHHHHhhchhhHhHHhhhcCCCCCCCCCCCCccccccCCcHHHHHHH
Q 002833 447 GVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRA 526 (875)
Q Consensus 447 ~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~y~~s~~~q~~~ 526 (875)
|+|||++++++++++++||.+...|++++++++|+++|++|+.++++.++++.|.++++.++..+..++|..++|+|+++
T Consensus 441 n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~ 520 (1470)
T PLN03140 441 GTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKA 520 (1470)
T ss_pred ChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHHH
Confidence 99999999999999889998777788888999999999999999999999888877766677766778899999999999
Q ss_pred HHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccccCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 002833 527 CFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFY 606 (875)
Q Consensus 527 ~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~gt~F~~~~~~~~~~~~~~~~~g~lFf~~~~~~~~~~~el~~~~~~rpvf~ 606 (875)
|++|+|++++||+.++++|++|.+++|+|+|++||+++++..+..+++.+.|++||++++++|+++++++.++.+||||+
T Consensus 521 ~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~~~~r~vf~ 600 (1470)
T PLN03140 521 CWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFY 600 (1470)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhH
Confidence 99999999999999999999999999999999999998766555677889999999999999999999999999999999
Q ss_pred HHhhcCccchHHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCcchHHHHHHHHHHHHHHHhHHHHHHHHhhcCCcHHHH
Q 002833 607 KQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVIS 686 (875)
Q Consensus 607 kqr~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Y~m~Gl~~~~~~Ff~f~l~l~l~~~~~~~lf~~iaa~~~~~~~A 686 (875)
|||+++|||||+|++|+++++||+.++++++|++|+|||+||++++++||+|++++++++++++++|+++++++||+.+|
T Consensus 601 ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A 680 (1470)
T PLN03140 601 KQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIA 680 (1470)
T ss_pred HhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccCCCCccchhhhhhhhCHHHHHHHHHHHHhhcCCccccCCCCCCCccccccceeecccCccc
Q 002833 687 NTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFST 766 (875)
Q Consensus 687 ~~~~~~~~~~~~lf~Gf~i~~~~ip~w~~W~~~isP~~Ya~~al~~NEf~~~~~~~~~~~~~~~~~~~G~~~L~~~g~~~ 766 (875)
+++++++++++++|+||+||+++||+||+|++||||++|||+|+++|||.+.+|.+..+++ .+.+.|+++|+.+|+..
T Consensus 681 ~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~--~~~~~G~~~L~~~g~~~ 758 (1470)
T PLN03140 681 NTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASD--NSTRLGTAVLNIFDVFT 758 (1470)
T ss_pred HHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCC--CCcccHHHHHHhcCcCc
Confidence 9999999999999999999999999999999999999999999999999999986432221 24678999999999999
Q ss_pred cCcchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcceeeccchhhhccc-------c-cccch--hhhh--cccc--
Q 002833 767 ESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGEKQRASG-------H-EAEGM--QMAV--RSSS-- 832 (875)
Q Consensus 767 ~~~~~w~~~giL~g~~~~f~~l~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~--~~~~--~~~~-- 832 (875)
++.|+|+|+|+|+||+++|+++++++|+|+++..++++++..++.+...... . ++... .... +...
T Consensus 759 ~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 838 (1470)
T PLN03140 759 DKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEETAEEMEGEEDSIPRSLSSADGNNTREVAIQRMSNPEG 838 (1470)
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCCccccccchhhhhccccccccccccccccccccccccccccccc
Confidence 8999999999999999999999999999999887777765432211100000 0 00000 0000 0000
Q ss_pred -----ccc-c-ccccccCCCcccCCCCceEEEeceEEEEcCCCCc
Q 002833 833 -----KTV-G-AAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAVS 870 (875)
Q Consensus 833 -----~~~-~-~~~~~~~~~~~l~f~p~~~tf~~v~Y~V~~p~~~ 870 (875)
... . ......++++++||+|.+++|+||+|+|++|+++
T Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~y~v~~~~~~ 883 (1470)
T PLN03140 839 LSKNRDSSLEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEM 883 (1470)
T ss_pred cccccccccccccccccccccccCCCcceEEEEEEEEEEccCccc
Confidence 000 0 0011234578899999999999999999999764
No 3
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.5e-112 Score=1087.96 Aligned_cols=664 Identities=29% Similarity=0.467 Sum_probs=562.5
Q ss_pred cChHHHHHHHhhhcccc--CCCCCceEEEEeeeeEEEEeecccccccchhHHHHHHHHHHhhhccccCCcccccccccce
Q 002833 113 EDNEKFLKRIRHRTDRV--GIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDV 190 (875)
Q Consensus 113 ~~~~~~~~~~~~~~~~~--g~~~p~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~IL~~v 190 (875)
+|.+++++.+.++.++. +++.++++|+|+||+|++ ...+...+||+.|.+.+....+.... ...+++++++||+||
T Consensus 3 f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~-~~~~~~~~~t~~~~~~~~~~~~~~~~-~~~~~~~~~~iL~~v 80 (1394)
T TIGR00956 3 FNAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYG-VAADSDYQPTFPNALLKILTRGFRKL-KKFRDTKTFDILKPM 80 (1394)
T ss_pred CCHHHHHHHHHHHHhccccCCCCCeeeEEEECCEEEE-EeccccccCchHHHHHHHHHHHHHHh-cccCCCCcceeeeCC
Confidence 56677776543333343 455559999999999998 33466678999998877665332211 012234567899999
Q ss_pred eEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCC-CCccEEEECCEeCCCCc--cCceEEEEecCCCCCCCCCHHHHHH
Q 002833 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL-RASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEMTVRETLD 267 (875)
Q Consensus 191 s~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~-~~sG~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lTV~EtL~ 267 (875)
|+.++|||+++|+||||||||||||+|+|+.++.. ..+|+|.|||+++.+.. .++.++||+|+|.|++++||+|||.
T Consensus 81 s~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~ 160 (1394)
T TIGR00956 81 DGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLD 160 (1394)
T ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHH
Confidence 99999999999999999999999999999974321 25999999999875432 2456999999999999999999999
Q ss_pred HhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCCCHHH
Q 002833 268 FSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQ 347 (875)
Q Consensus 268 f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGe 347 (875)
|+++++.+..+.. ..++.++ .+..++.+|+.+||++++||+||++++++|||||
T Consensus 161 f~~~~~~~~~~~~---~~~~~~~-----------------------~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGe 214 (1394)
T TIGR00956 161 FAARCKTPQNRPD---GVSREEY-----------------------AKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGE 214 (1394)
T ss_pred HHHHhCCCCCCCC---CCCHHHH-----------------------HHHHHHHHHHHcCcccccCceeCCCcCCCCCccc
Confidence 9988765321100 0011110 1123467899999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCeEEEecC
Q 002833 348 KKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGP 427 (875)
Q Consensus 348 rkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~iv~~Gp 427 (875)
||||+||++|+.+|+++||||||+|||+.++.++++.|+++++..|.|+|+++|||+++++++||+|++|++|+++|+|+
T Consensus 215 rkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~ 294 (1394)
T TIGR00956 215 RKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGP 294 (1394)
T ss_pred chHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECC
Confidence 99999999999999999999999999999999999999999986689999999999999999999999999999999999
Q ss_pred hhhHHHHHHHcCCCCCCCCCHHHHHHHhccchhhhHHHhhcCCCCccCChhhHHHHHhhchhhHhHHhhhcCCCCCC---
Q 002833 428 RDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKS--- 504 (875)
Q Consensus 428 ~~~~~~~F~~~Gf~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~--- 504 (875)
++++.+||+++||+||++.|+|||++++++++++ +++.+.+. ..+.++++|+++|++|+.++++.++++.+.++.
T Consensus 295 ~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~-~~~~~~e~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 372 (1394)
T TIGR00956 295 ADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAER-QIKPGYEK-KVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSES 372 (1394)
T ss_pred HHHHHHHHHHcCCCCCCCCChHHHHHhccChhhh-hccccccc-cCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccch
Confidence 9999999999999999999999999999988653 44332111 234678999999999999888887765432210
Q ss_pred ------------CCCCCCccccccCCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccccCCCCCccc
Q 002833 505 ------------QAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNG 572 (875)
Q Consensus 505 ------------~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~gt~F~~~~~~~~~~~~ 572 (875)
+..+.....++|.+|+|+|+++|++|++++++||+.+++.|+++.+++|+++|++||+++.+. .+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~---~~ 449 (1394)
T TIGR00956 373 DTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNT---SD 449 (1394)
T ss_pred hhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCc---hh
Confidence 011122345679999999999999999999999999999999999999999999999998533 46
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCcch
Q 002833 573 GSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAA 652 (875)
Q Consensus 573 ~~~~~g~lFf~~~~~~~~~~~el~~~~~~rpvf~kqr~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Y~m~Gl~~~~ 652 (875)
.+.+.|++||++++++|+++++++.++.+||||+|||.+++|++++|++|++++++|+.++.+++|++|+|||+||++++
T Consensus 450 ~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~ 529 (1394)
T TIGR00956 450 FYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTA 529 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhhCHHHHHHHHHHH
Q 002833 653 SRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLV 732 (875)
Q Consensus 653 ~~Ff~f~l~l~l~~~~~~~lf~~iaa~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~w~~W~~~isP~~Ya~~al~~ 732 (875)
++||+|++++++++++++++|+++++++||+.+|+.+++++++++++|+||++|+++||+||+|++||||++|||||+++
T Consensus 530 ~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~ 609 (1394)
T TIGR00956 530 GRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMV 609 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCccccC---CCCCC---------Cc---------cccccceeecc-cCccccCcchhhhHHHHHHHHHHHHHHHH
Q 002833 733 NEFLGGRWDAQ---NKDPS---------IN---------QPTIGKVLLKI-RGFSTESNWYWIGVGALTGYSFLFNFLFI 790 (875)
Q Consensus 733 NEf~~~~~~~~---~~~~~---------~~---------~~~~G~~~L~~-~g~~~~~~~~w~~~giL~g~~~~f~~l~~ 790 (875)
|||++..|+|. +.|++ .| +.+.|++||+. +|+. ..|+|+|+|+|++|+++|+++++
T Consensus 610 nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~--~~~~w~n~gil~~~~v~f~~~~~ 687 (1394)
T TIGR00956 610 NEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYY--NSHKWRNFGIIIGFTVFFFFVYI 687 (1394)
T ss_pred hhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcc--cchhhHHHHHHHHHHHHHHHHHH
Confidence 99999999884 22211 12 24578899984 5654 56899999999999999999999
Q ss_pred HHHHhcCCCCCCCcceeeccc
Q 002833 791 AALAYLNPIGDSNSTVIEEDG 811 (875)
Q Consensus 791 l~L~~~~~~~~~~~~~~~~~~ 811 (875)
++++|+++...++.++++++.
T Consensus 688 l~l~~~~~~~~~~~~~~~~~~ 708 (1394)
T TIGR00956 688 LLTEFNKGAKQKGEILVFRRG 708 (1394)
T ss_pred HHHHhccccCCCCceEeeccc
Confidence 999999988877777776653
No 4
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=2.5e-100 Score=912.42 Aligned_cols=573 Identities=27% Similarity=0.467 Sum_probs=495.5
Q ss_pred ccccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCC
Q 002833 181 KRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEM 260 (875)
Q Consensus 181 ~~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~l 260 (875)
+++++||+|||+.++|||+++|+|||||||||||++|+|+.+++...+|+|.+||.+++....++.++||+|+|.+++++
T Consensus 35 ~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~l 114 (617)
T TIGR00955 35 RPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTL 114 (617)
T ss_pred cCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccC
Confidence 34577999999999999999999999999999999999998875456899999999986444467899999999999999
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCcc-
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM- 339 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~- 339 (875)
||+|||.|+++++.+.. +++.+ ....++++++.+||.+++||.||++.
T Consensus 115 TV~e~l~f~~~~~~~~~-------~~~~~------------------------~~~~v~~~l~~lgL~~~~~t~vg~~~~ 163 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRR-------VTKKE------------------------KRERVDEVLQALGLRKCANTRIGVPGR 163 (617)
T ss_pred cHHHHHHHHHhcCCCCC-------CCHHH------------------------HHHHHHHHHHHcCchhcCcCccCCCCC
Confidence 99999999988764321 01111 12347889999999999999999864
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeC
Q 002833 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (875)
Q Consensus 340 ~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~ 419 (875)
.++|||||||||+||++|+.+|+++||||||+|||+.++.++++.|+++++ .|+|+|+++|||+.+++++||++++|++
T Consensus 164 ~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~ 242 (617)
T TIGR00955 164 VKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAE 242 (617)
T ss_pred CCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeC
Confidence 789999999999999999999999999999999999999999999999987 4899999999999999999999999999
Q ss_pred CeEEEecChhhHHHHHHHcCCCCCCCCCHHHHHHHhccchhhhHHHhhcCCCCccCChhhHHHHHhhchhhHhHHhhhcC
Q 002833 420 GQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRV 499 (875)
Q Consensus 420 G~iv~~Gp~~~~~~~F~~~Gf~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~ 499 (875)
|+++|+|+++++.+||+++||+||++.|||||++++++.....+ .. ...+.+++.+.|++++.+++..+++..
T Consensus 243 G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~ 315 (617)
T TIGR00955 243 GRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSE-----NE--SRERIEKICDSFAVSDIGRDMLVNTNL 315 (617)
T ss_pred CeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCcccc-----cc--hHHHHHHHHHHHhcchhhHHHHHHhhh
Confidence 99999999999999999999999999999999999987543211 00 112346778888888777666554432
Q ss_pred CCCCCC---CCCCCccccccCCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccccCCCCCcccchhH
Q 002833 500 PYDKSQ---AHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRY 576 (875)
Q Consensus 500 ~~~~~~---~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~gt~F~~~~~~~~~~~~~~~~ 576 (875)
..+... .........+|..+++.|+++|++|+++..+||+.++..++++.+++|+++|++||+++.+. .+.+.+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~---~~~~~~ 392 (617)
T TIGR00955 316 WSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQ---KGVQNI 392 (617)
T ss_pred hhccccccccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCH---HHHHHH
Confidence 211110 01111123568899999999999999999999999999999999999999999999987543 456778
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHhhhhhHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCcchHHH
Q 002833 577 FGALFFSLLNIMFNGF-AENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRF 655 (875)
Q Consensus 577 ~g~lFf~~~~~~~~~~-~el~~~~~~rpvf~kqr~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Y~m~Gl~~~~~~F 655 (875)
.|++|+++++++|.++ ..++.+..+|+||+|||..++|++++|++|++++++|+.++.+++|++|+|||+|+++++++|
T Consensus 393 ~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f 472 (617)
T TIGR00955 393 NGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHF 472 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHH
Confidence 9999999998888865 446677789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhhCHHHHHHHHHHHHhh
Q 002833 656 FKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEF 735 (875)
Q Consensus 656 f~f~l~l~l~~~~~~~lf~~iaa~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~w~~W~~~isP~~Ya~~al~~NEf 735 (875)
|+|+++++++++++.++++++++++||..+|+.+++++++++++|+||+++.++||+||+|++|+||++||++|+++|||
T Consensus 473 ~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef 552 (617)
T TIGR00955 473 LTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQW 552 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcc-ccCCCCCCCccccccceeecccCccccCcchhhhHHHHHHHHHHHHHHHHHHHHhcC
Q 002833 736 LGGRW-DAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLN 797 (875)
Q Consensus 736 ~~~~~-~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~giL~g~~~~f~~l~~l~L~~~~ 797 (875)
.+..+ .|...+....|...|+++|+.+|+..+ ++|+++++|++|+++|+++++++|++..
T Consensus 553 ~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~--~~~~~~~il~~~~~~~~~l~~~~L~~~~ 613 (617)
T TIGR00955 553 SDVDNIECTSANTTGPCPSSGEVILETLSFRNA--DLYLDLIGLVILIFFFRLLAYFALRIRI 613 (617)
T ss_pred CCCccccccCcCcCCCCCcChHHHHHhcCCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99876 453211111244578999999999764 4699999999999999999999999753
No 5
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=9.4e-99 Score=899.99 Aligned_cols=609 Identities=20% Similarity=0.332 Sum_probs=482.5
Q ss_pred CCceEEEEeeeeEEEEeecccccccchhHHHHHHHHHHhhhccccCCcccccccccceeEEEeCCeEEEEEcCCCCCHHH
Q 002833 133 IPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTT 212 (875)
Q Consensus 133 ~p~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~IL~~vs~~i~pGe~~~llGpnGSGKST 212 (875)
.+.+.++|.++++.+........... ....+...-...++.+++ +++++|+|||+.++|||+++|+|||||||||
T Consensus 35 ~~~~~~~~~~~~y~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~-~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKST 109 (659)
T PLN03211 35 CYPITLKFMDVCYRVKFENMKNKGSN----IKRILGHKPKISDETRQI-QERTILNGVTGMASPGEILAVLGPSGSGKST 109 (659)
T ss_pred CCceEEEEEeEEEEEccCCCcccccc----cccccccccccccccccC-CCCeeeeCCEEEEECCEEEEEECCCCCCHHH
Confidence 35688999999887643210111100 011111111111222222 3567999999999999999999999999999
Q ss_pred HHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhc
Q 002833 213 LMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQA 292 (875)
Q Consensus 213 LLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~ 292 (875)
||++|+|+++++ ..+|+|.+||+++... .++.++||+|++.+++.+||+||+.|++.++.+.. .++.+
T Consensus 110 LL~iLaG~~~~~-~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~-------~~~~~--- 177 (659)
T PLN03211 110 LLNALAGRIQGN-NFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKS-------LTKQE--- 177 (659)
T ss_pred HHHHHhCCCCCC-ceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCC-------CCHHH---
Confidence 999999998873 2589999999987542 24568999999999999999999999876542210 00101
Q ss_pred CCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCC
Q 002833 293 GIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTG 372 (875)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsG 372 (875)
....++++++.+||++++||.+|+...++|||||||||+||++|+.+|++|||||||+|
T Consensus 178 ---------------------~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsg 236 (659)
T PLN03211 178 ---------------------KILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSG 236 (659)
T ss_pred ---------------------HHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCC
Confidence 12346789999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCeEEEecChhhHHHHHHHcCCCCCCCCCHHHHH
Q 002833 373 LDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452 (875)
Q Consensus 373 LDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~iv~~Gp~~~~~~~F~~~Gf~~p~~~~~adfl 452 (875)
||+.++.++++.|+++++ .|+|+|+++|||..+++++||+|++|++|+++|+|+++++.+||+++||+||++.|||||+
T Consensus 237 LD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ 315 (659)
T PLN03211 237 LDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFL 315 (659)
T ss_pred cCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHH
Confidence 999999999999999987 5899999999999889999999999999999999999999999999999999999999999
Q ss_pred HHhccchhhhHHHhhcCCCCccCChhhHHHHHhhchhhHhHHhhhcCC---CCCCC-----CCCC-CccccccCCcHHHH
Q 002833 453 QEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVP---YDKSQ-----AHPA-SLVKEKYGISKWEL 523 (875)
Q Consensus 453 ~~v~s~~~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~---~~~~~-----~~~~-~~~~~~y~~s~~~q 523 (875)
+++++...+.+.....+.+ ...+++.+.|++.. .+...++.+.. ....+ ..+. ......+..++|+|
T Consensus 316 ldv~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q 391 (659)
T PLN03211 316 LDLANGVCQTDGVSEREKP---NVKQSLVASYNTLL-APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQ 391 (659)
T ss_pred HHHcCccccCCCccccccc---hHHHHHHHHHHhhc-cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHH
Confidence 9999864321100000111 11244555665321 11111111100 00000 0000 01122356789999
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccccCCCCCcccchhHHHHHHHHHHHHHH-HHHHHHHHHhhhh
Q 002833 524 FRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMF-NGFAENAMTVLRL 602 (875)
Q Consensus 524 ~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~gt~F~~~~~~~~~~~~~~~~~g~lFf~~~~~~~-~~~~el~~~~~~r 602 (875)
+++|++|++++ +||+.+...|+++.+++|+++|++||+++ . .+.+.+.|++||++++.++ +.++.++.+..+|
T Consensus 392 ~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~--~---~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er 465 (659)
T PLN03211 392 FSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD--F---RDVQDRLGLLFFISIFWGVFPSFNSVFVFPQER 465 (659)
T ss_pred HHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC--H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999988 88888889999999999999999999985 2 3567889999999888665 5568888888999
Q ss_pred hHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCcchHHHHHHHHHHHHHHHhHHHHHHHHhhcCCc
Q 002833 603 PIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRT 682 (875)
Q Consensus 603 pvf~kqr~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Y~m~Gl~~~~~~Ff~f~l~l~l~~~~~~~lf~~iaa~~~~ 682 (875)
+||+|||.+++|++++|++|++++|+|+.++.+++|++|+|||+||++++++||+|++++++++++++++++++++++||
T Consensus 466 ~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~ 545 (659)
T PLN03211 466 AIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMD 545 (659)
T ss_pred HHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhhCHHHHHHHHHHHHhhcCCc-----cccCCCCCCCccccccce
Q 002833 683 EVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGR-----WDAQNKDPSINQPTIGKV 757 (875)
Q Consensus 683 ~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~w~~W~~~isP~~Ya~~al~~NEf~~~~-----~~~~~~~~~~~~~~~G~~ 757 (875)
+.+|+.+++++++++++||||+++ +||+||+|++|+||++||+||+++|||.+.+ +.|..+. +....+..
T Consensus 546 ~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~---~~~~~~c~ 620 (659)
T PLN03211 546 AKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPH---GSDRASCK 620 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcc---cCCCCCCc
Confidence 999999999999999999999997 7999999999999999999999999998754 2443221 11111222
Q ss_pred eecccCccccCcchhhhHHHHHHHHHHHHHHHHHHHHhcC
Q 002833 758 LLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLN 797 (875)
Q Consensus 758 ~L~~~g~~~~~~~~w~~~giL~g~~~~f~~l~~l~L~~~~ 797 (875)
++...++.. ..+|.++++|++++++|+++++++|++++
T Consensus 621 ~~~~~~~~~--~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 621 FVEEDVAGQ--ISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred cchhhhhcc--cchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444333332 34799999999999999999999998765
No 6
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.2e-98 Score=888.47 Aligned_cols=585 Identities=29% Similarity=0.512 Sum_probs=499.3
Q ss_pred CCceEEEEeeeeEEEEeecccccccchhHHHHHHHHHHhhhccccCCcccccccccceeEEEeCCeEEEEEcCCCCCHHH
Q 002833 133 IPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTT 212 (875)
Q Consensus 133 ~p~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~IL~~vs~~i~pGe~~~llGpnGSGKST 212 (875)
...+.+.|+++++..... .. ..++||+||||.++|||++|||||+||||||
T Consensus 21 ~~~~~~~~~~~~~~~~~~----------------------------~~-~~k~iL~~vsg~~~~Gel~AimG~SGsGKtT 71 (613)
T KOG0061|consen 21 LEPVKLSFRNLTLSSKEK----------------------------SK-KTKTILKGVSGTAKPGELLAIMGPSGSGKTT 71 (613)
T ss_pred cccceeEEEEEEEEecCC----------------------------CC-ccceeeeCcEEEEecCeEEEEECCCCCCHHH
Confidence 345788999998875321 01 3578999999999999999999999999999
Q ss_pred HHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhc
Q 002833 213 LMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQA 292 (875)
Q Consensus 213 LLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~ 292 (875)
||++|+|+..++...+|+|++||++.+....++.+|||.|+|.++|+|||+|||.|+|+++.+.. +++.+
T Consensus 72 LL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~-------~~~~~--- 141 (613)
T KOG0061|consen 72 LLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSS-------LSKEE--- 141 (613)
T ss_pred HHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCC-------CCHHH---
Confidence 99999999987667899999999887766668899999999999999999999999999986532 22222
Q ss_pred CCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCC
Q 002833 293 GIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTG 372 (875)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsG 372 (875)
.+.+++++++.|||.+|+||++|+...|||||||||||+||..|+.+|.|||+||||+|
T Consensus 142 ---------------------k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSG 200 (613)
T KOG0061|consen 142 ---------------------KRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSG 200 (613)
T ss_pred ---------------------HHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCC
Confidence 24568999999999999999999998999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCeEEEecChhhHHHHHHHcCCCCCCCCCHHHHH
Q 002833 373 LDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452 (875)
Q Consensus 373 LDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~iv~~Gp~~~~~~~F~~~Gf~~p~~~~~adfl 452 (875)
||+.++.++++.|+++|++ |+|||+++|||+.+++++||++++|++|+++|+|+++++.+||+++||+||++.||+||+
T Consensus 201 LDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~ 279 (613)
T KOG0061|consen 201 LDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFL 279 (613)
T ss_pred cchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHH
Confidence 9999999999999999997 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccch--hhhHHHhhcCCCCccCChhhHHHHHh-hchhhHhHHhhhcCCCCCCCCCCCCccccccCCcHHHHHHHHHH
Q 002833 453 QEVTSKK--DQEQYWFRKNQPYRYIPVSDFVEGFK-SFHMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFA 529 (875)
Q Consensus 453 ~~v~s~~--~~~~~~~~~~~~~~~~~~~ef~~~~~-~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~ 529 (875)
.++.+.. .+... .. .......+.++ .....+... .........+ + .......++|.|+..+++
T Consensus 280 l~l~s~~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~---~~~~~~~s~~~q~~~L~~ 345 (613)
T KOG0061|consen 280 LDLLSVDSGTRELE--EA------VRIAKLINKFSQTDNLKKTLE-ALEKSLSTSK--K---VEIGTSPSWWTQFKILLK 345 (613)
T ss_pred HHHHccCCCchhHH--hH------HHHHHHhhhccccchhhhhHH-HHhhhccccc--c---cccccCCcHHHHHHHHHH
Confidence 9988742 11100 00 00011111121 111111110 0111000000 0 001116899999999999
Q ss_pred HHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccccCCCCCcccchhHHHHHHHHHHHHHHHHHH-HHHHHhhhhhHHHHH
Q 002833 530 REWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFA-ENAMTVLRLPIFYKQ 608 (875)
Q Consensus 530 R~~~~~~Rd~~~~~~r~~~~ii~ali~gt~F~~~~~~~~~~~~~~~~~g~lFf~~~~~~~~~~~-el~~~~~~rpvf~kq 608 (875)
|.++.++||+.++..|++|.+++|+++|++||+++.+.. +.+++.|++||.+.+..|..+. .++.+..+|++|.||
T Consensus 346 R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~---~~~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE 422 (613)
T KOG0061|consen 346 RSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAK---GIQNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRE 422 (613)
T ss_pred HHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchH---HHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH
Confidence 999999999999999999999999999999999975443 4457899999999988777666 588899999999999
Q ss_pred hhcCccchHHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCcchHHHHHHHHHHHHHHHhHHHHHHHHhhcCCcHHHHHH
Q 002833 609 RDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNT 688 (875)
Q Consensus 609 r~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Y~m~Gl~~~~~~Ff~f~l~l~l~~~~~~~lf~~iaa~~~~~~~A~~ 688 (875)
+.+++|+.++|++|+.++++|+.++.+++|++|+|||+|++++..+|++|++++++..+++.+++.+++++.||...|+.
T Consensus 423 ~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~ 502 (613)
T KOG0061|consen 423 TSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATS 502 (613)
T ss_pred HhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccCCCCccchhhhhhhhCHHHHHHHHHHHHhhcCCccccCCCCCCCccccccceeecccCccccC
Q 002833 689 LGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTES 768 (875)
Q Consensus 689 ~~~~~~~~~~lf~Gf~i~~~~ip~w~~W~~~isP~~Ya~~al~~NEf~~~~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~ 768 (875)
+++++++.+++||||+++.++||+||+|++|+|+++|++||+++|||.+....|...++ .++...|.++|+..++...+
T Consensus 503 ~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~ 581 (613)
T KOG0061|consen 503 LGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGN-LCCESTGEDVLKQLGFEDSS 581 (613)
T ss_pred hHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcC-CcccccHHHHHHhcCCcccc
Confidence 99999999999999999999999999999999999999999999999974444432221 25678899999999997655
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHhcCC
Q 002833 769 NWYWIGVGALTGYSFLFNFLFIAALAYLNP 798 (875)
Q Consensus 769 ~~~w~~~giL~g~~~~f~~l~~l~L~~~~~ 798 (875)
+|.|+.++++++++|+++++++|++...
T Consensus 582 --~~~~l~~l~~~~~~~~il~y~~L~~~~~ 609 (613)
T KOG0061|consen 582 --FWLDLLVLLAFIVFFRVLGYLALRFRVK 609 (613)
T ss_pred --cchhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5999999999999999999999998653
No 7
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.1e-97 Score=948.27 Aligned_cols=599 Identities=22% Similarity=0.394 Sum_probs=508.5
Q ss_pred CCCCceEEEEeeeeEEEEeecccccccchhHHHHHHHHHHhhhccccCCcccccccccceeEEEeCCeEEEEEcCCCCCH
Q 002833 131 IEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGK 210 (875)
Q Consensus 131 ~~~p~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~IL~~vs~~i~pGe~~~llGpnGSGK 210 (875)
++...+.+.|+|+++......+.+ +. ....++++||+|||+.++||++++|+|||||||
T Consensus 861 ~~~~~~~~~~~~v~y~v~~~~~~~--------------------~~-~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGK 919 (1470)
T PLN03140 861 LPFTPLAMSFDDVNYFVDMPAEMK--------------------EQ-GVTEDRLQLLREVTGAFRPGVLTALMGVSGAGK 919 (1470)
T ss_pred cCCCcceEEEEEEEEEEccCcccc--------------------cc-ccCcCCceEeeCcEEEEECCeEEEEECCCCCCH
Confidence 344556799999998864321100 00 011234579999999999999999999999999
Q ss_pred HHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHH
Q 002833 211 TTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREK 290 (875)
Q Consensus 211 STLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~ 290 (875)
|||||+|+|+.++. ..+|+|.+||++......++.++||+|+|.|++.+||+|||.|++.++.+.. .++.+
T Consensus 920 TTLL~~LaG~~~~g-~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~-------~~~~~- 990 (1470)
T PLN03140 920 TTLMDVLAGRKTGG-YIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKE-------VSKEE- 990 (1470)
T ss_pred HHHHHHHcCCCCCC-cccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCC-------CCHHH-
Confidence 99999999997642 3589999999987543345679999999999999999999999976543211 00000
Q ss_pred hcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCC
Q 002833 291 QAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEIS 370 (875)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPT 370 (875)
....++++++.+||.+++|+.+|+..+++|||||||||+||++|+.+|++|||||||
T Consensus 991 -----------------------~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPT 1047 (1470)
T PLN03140 991 -----------------------KMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPT 1047 (1470)
T ss_pred -----------------------HHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCC
Confidence 123468899999999999999998888999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeC-CeEEEecCh----hhHHHHHHHc-CC-CCC
Q 002833 371 TGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE-GQIVYQGPR----DNVLEFFEHM-GF-KCP 443 (875)
Q Consensus 371 sGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~-G~iv~~Gp~----~~~~~~F~~~-Gf-~~p 443 (875)
+|||+.++..+++.|+++++ .|+|+|+++|||..+++++||++++|++ |+++|+||. +++.+||+++ |+ +||
T Consensus 1048 sgLD~~~a~~v~~~L~~l~~-~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p 1126 (1470)
T PLN03140 1048 SGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIK 1126 (1470)
T ss_pred CCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCC
Confidence 99999999999999999987 4899999999999889999999999996 899999996 5899999998 66 499
Q ss_pred CCCCHHHHHHHhccchhhhHHHhhcCCCCccCChhhHHHHHhhchhhHhHHhhhcCCCCCCCCCCCCccccccCCcHHHH
Q 002833 444 ERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWEL 523 (875)
Q Consensus 444 ~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~y~~s~~~q 523 (875)
+..|||||++|+++..... ....++++.|++|+.+++..++++.........+.....++|..++|.|
T Consensus 1127 ~~~NPAd~~l~v~~~~~~~------------~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q 1194 (1470)
T PLN03140 1127 EKYNPATWMLEVSSLAAEV------------KLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQ 1194 (1470)
T ss_pred CCCCchhhhhhhhcccccc------------cccchHHHHHhccHHHHHHHHHHHHhccCCCCccccccCccccCCHHHH
Confidence 9999999999998753211 1235799999999988776554432111111111112246799999999
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccccCCCCCcccchhHHHHHHHHHHHHHHHHHHH-HHHHhhhh
Q 002833 524 FRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAE-NAMTVLRL 602 (875)
Q Consensus 524 ~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~gt~F~~~~~~~~~~~~~~~~~g~lFf~~~~~~~~~~~e-l~~~~~~r 602 (875)
+++|++|+++.+||||.++..|+++.+++|+++|++||+++.+.++.++.++++|++|+++++++++...+ ++.+..+|
T Consensus 1195 ~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR 1274 (1470)
T PLN03140 1195 FKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVER 1274 (1470)
T ss_pred HHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998766666777888999999999988866544 46777899
Q ss_pred hHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCcchHHHHHHHHHHHHHHHhHHHHHHHHhhcCCc
Q 002833 603 PIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRT 682 (875)
Q Consensus 603 pvf~kqr~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Y~m~Gl~~~~~~Ff~f~l~l~l~~~~~~~lf~~iaa~~~~ 682 (875)
+||+|||.+++|++++|++|++++|+|+.++.+++|++|+|||+||++++++||+|+++++++.+++.++++++++++||
T Consensus 1275 ~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~ 1354 (1470)
T PLN03140 1275 TVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPN 1354 (1470)
T ss_pred HHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhhCHHHHHHHHHHHHhhcCCccccCCCCCCCcccccccee-ecc
Q 002833 683 EVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVL-LKI 761 (875)
Q Consensus 683 ~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~w~~W~~~isP~~Ya~~al~~NEf~~~~~~~~~~~~~~~~~~~G~~~-L~~ 761 (875)
..+|+.+++++++++++|+||++|+++||+||+|+||+||++|+++||++|||++....|.+++. .+...|++| ++.
T Consensus 1355 ~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~--~~~~~~~~~~~~~ 1432 (1470)
T PLN03140 1355 QQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGG--APDPTIKWYIQDH 1432 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCcccCCCC--CCCCcHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999998877655541 112345566 577
Q ss_pred cCccccCcchhhhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 002833 762 RGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPI 799 (875)
Q Consensus 762 ~g~~~~~~~~w~~~giL~g~~~~f~~l~~l~L~~~~~~ 799 (875)
+||.. .|.|++++++++|+++|.++++++++++|+.
T Consensus 1433 ~g~~~--~~~~~~~~il~~~~~~f~~~~~~~~~~~~~q 1468 (1470)
T PLN03140 1433 YGYDP--DFMGPVAAVLVGFTVFFAFIFAFCIRTLNFQ 1468 (1470)
T ss_pred cCcCc--ccccchhhhHHHHHHHHHHHHHHHHHHhhcc
Confidence 99865 5679999999999999999999999999864
No 8
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.1e-90 Score=887.05 Aligned_cols=563 Identities=25% Similarity=0.367 Sum_probs=478.8
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCH
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 262 (875)
+++||+|||+.++|||+++|+||||||||||||+|+|+.++....+|+|.+||+++.. ..++.++||+|+|.+++.+||
T Consensus 775 ~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~-~~~~~i~yv~Q~~~~~~~~Tv 853 (1394)
T TIGR00956 775 KRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS-SFQRSIGYVQQQDLHLPTSTV 853 (1394)
T ss_pred CcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh-hhhcceeeecccccCCCCCCH
Confidence 4579999999999999999999999999999999999987432347999999999853 246789999999999999999
Q ss_pred HHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCC
Q 002833 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (875)
Q Consensus 263 ~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (875)
+|||.|+++++.+.. .++.+ ....++++++.+||.+++|+.||+.. ++
T Consensus 854 ~E~L~~~a~l~~~~~-------~~~~~------------------------~~~~v~~~l~~l~L~~~~d~~v~~~~-~~ 901 (1394)
T TIGR00956 854 RESLRFSAYLRQPKS-------VSKSE------------------------KMEYVEEVIKLLEMESYADAVVGVPG-EG 901 (1394)
T ss_pred HHHHHHHHHhCCCCC-------CCHHH------------------------HHHHHHHHHHHcCChhhCCCeeCCCC-CC
Confidence 999999987653211 00111 12346789999999999999999643 38
Q ss_pred CCHHHHHHHHHHHHHhcCCc-EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCC-
Q 002833 343 ISGGQKKRVTTGEMLVGTAN-VLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG- 420 (875)
Q Consensus 343 LSGGerkRVsIA~aLv~~p~-iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G- 420 (875)
|||||||||+||++|+.+|+ +|||||||+|||+.++..+++.|+++++ .|+|+|+++|||...+++.||+|++|++|
T Consensus 902 LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~-~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG 980 (1394)
T TIGR00956 902 LNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLAD-HGQAILCTIHQPSAILFEEFDRLLLLQKGG 980 (1394)
T ss_pred CCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHhcCEEEEEcCCC
Confidence 99999999999999999997 9999999999999999999999999986 58999999999998888999999999997
Q ss_pred eEEEecCh----hhHHHHHHHcCC-CCCCCCCHHHHHHHhccchhhhHHHhhcCCCCccCChhhHHHHHhhchhhHhHHh
Q 002833 421 QIVYQGPR----DNVLEFFEHMGF-KCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIAS 495 (875)
Q Consensus 421 ~iv~~Gp~----~~~~~~F~~~Gf-~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~ 495 (875)
+++|+|++ +++.+||++.|+ +||+..|||||++|+.+...... ..+++.+.|+.|+..++..+
T Consensus 981 ~iv~~G~~~~~~~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~~------------~~~~~~~~~~~s~~~~~~~~ 1048 (1394)
T TIGR00956 981 QTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAH------------ANQDYHEVWRNSSEYQAVKN 1048 (1394)
T ss_pred EEEEECCcccccchHHHHHHhcCCCCCCCCCCHHHHHHHHhhcccccc------------hhccHHHHHhcCHHHHHHHH
Confidence 99999997 578999999996 99999999999999987532110 12457788888887766654
Q ss_pred hhcC---CCCCCCCCCCCccccccCCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccccCCCCCccc
Q 002833 496 DLRV---PYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNG 572 (875)
Q Consensus 496 ~l~~---~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~gt~F~~~~~~~~~~~~ 572 (875)
+++. +.............++|..|+|.|+++|++|+++.+||||.++..|+++.+++|+++|++||+++.+ ..+
T Consensus 1049 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~---~~~ 1125 (1394)
T TIGR00956 1049 ELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTS---LQG 1125 (1394)
T ss_pred HHHHhhcccccCccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCC---HHH
Confidence 4322 1111101001112357999999999999999999999999999999999999999999999999853 356
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHhhcCccchHHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCcc
Q 002833 573 GSRYFGALFFSLLNIMFNGFAENAMTVLRLPIF-YKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPA 651 (875)
Q Consensus 573 ~~~~~g~lFf~~~~~~~~~~~el~~~~~~rpvf-~kqr~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Y~m~Gl~~~ 651 (875)
.++++|++|+.+++..+.....++.++.+|++| +|||.+++|++++|++|++++|+|+.++.+++|.+|+|||+||.++
T Consensus 1126 i~~~~g~~f~~~~~~~~~~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~ 1205 (1394)
T TIGR00956 1126 LQNQMFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWN 1205 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCc
Confidence 788999999988876666555667777888875 9999999999999999999999999999999999999999999988
Q ss_pred hHH-------HHHHHHHHHHHHHhHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhhCHHH
Q 002833 652 ASR-------FFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMM 724 (875)
Q Consensus 652 ~~~-------Ff~f~l~l~l~~~~~~~lf~~iaa~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~w~~W~~~isP~~ 724 (875)
+.. ||+|+++++++.+++.+++.++++++||..+|+.+++++++++++|+||++++++||+||+|+||+||++
T Consensus 1206 ~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~ 1285 (1394)
T TIGR00956 1206 ASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFT 1285 (1394)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHH
Confidence 866 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCccccCC--------CCC---------------------------CCccccccceeecccCccccCc
Q 002833 725 YGQTSLLVNEFLGGRWDAQN--------KDP---------------------------SINQPTIGKVLLKIRGFSTESN 769 (875)
Q Consensus 725 Ya~~al~~NEf~~~~~~~~~--------~~~---------------------------~~~~~~~G~~~L~~~g~~~~~~ 769 (875)
|+++|+++|||++....|.. |.+ .||....|++||+.+|+..++
T Consensus 1286 y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~~- 1364 (1394)
T TIGR00956 1286 YLVQALLSTGLADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSG- 1364 (1394)
T ss_pred HHHHHHHHHHcCCCeeecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHHcCCcccc-
Confidence 99999999999998876632 110 023356899999999997655
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhcC
Q 002833 770 WYWIGVGALTGYSFLFNFLFIAALAYLN 797 (875)
Q Consensus 770 ~~w~~~giL~g~~~~f~~l~~l~L~~~~ 797 (875)
+|+|+|++++|++++ ++.+++|.|+.
T Consensus 1365 -~w~~~~i~~~~~~~~-~~~~~~l~~~~ 1390 (1394)
T TIGR00956 1365 -RWRNFGIFIAFIFFN-IIATVFFYWLA 1390 (1394)
T ss_pred -cccchhhhhHHHHHH-HHHHHhhheEE
Confidence 599999999998777 88888888763
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5e-92 Score=845.30 Aligned_cols=563 Identities=26% Similarity=0.409 Sum_probs=486.6
Q ss_pred cccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCC
Q 002833 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261 (875)
Q Consensus 182 ~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lT 261 (875)
+++++|+||+|.++||.+|||||+|||||||||++|||+... ..++|+|.+||.+.++...+|.+|||.|+|.|.|++|
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~-G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~T 880 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTG-GYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELT 880 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCccc-ceEEeEEEECCeeCchhhhccccceeecccccCcccc
Confidence 567899999999999999999999999999999999999765 3579999999999986667899999999999999999
Q ss_pred HHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCC
Q 002833 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (875)
Q Consensus 262 V~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (875)
|||.|.|+|.+|.+.. ++..| ..+.+|++++.++|++++|.+||+.. .
T Consensus 881 VrESL~fSA~LRlp~~-------v~~~e------------------------k~~yVe~Vi~lleL~~~~daiVG~~G-~ 928 (1391)
T KOG0065|consen 881 VRESLRFSAALRLPKE-------VSDEE------------------------KYEYVEEVIELLELKEYADALVGLPG-S 928 (1391)
T ss_pred hHHHHHHHHHHcCCCc-------CCHHH------------------------HHHHHHHHHHHhCchhhhhhhccCCC-C
Confidence 9999999999875532 11111 12468999999999999999999987 9
Q ss_pred CCCHHHHHHHHHHHHHhcCC-cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeC-
Q 002833 342 GISGGQKKRVTTGEMLVGTA-NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE- 419 (875)
Q Consensus 342 gLSGGerkRVsIA~aLv~~p-~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~- 419 (875)
|||.+||||++||..|+.+| .||||||||||||+.++..|++.+|++++ .|.||+|+||||+.++++.||++++|.+
T Consensus 929 GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~-tGqtIlCTIHQPS~~ife~FD~LLLLkrG 1007 (1391)
T KOG0065|consen 929 GLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLAD-TGQTILCTIHQPSIDIFEAFDELLLLKRG 1007 (1391)
T ss_pred CCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHh-cCCeEEEEecCCcHHHHHHHhHHHHHhcC
Confidence 99999999999999999999 99999999999999999999999999998 7999999999999999999999999975
Q ss_pred CeEEEecChh----hHHHHHHHcC-CCCCCCCCHHHHHHHhccchhhhHHHhhcCCCCccCChhhHHHHHhhchhhHhHH
Q 002833 420 GQIVYQGPRD----NVLEFFEHMG-FKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIA 494 (875)
Q Consensus 420 G~iv~~Gp~~----~~~~~F~~~G-f~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~ 494 (875)
|++||.||.. .+++|||+.| .+||+..|||||.+|+++...+.. ...++++.|++|+.++++.
T Consensus 1008 GqtVY~G~lG~~s~~li~YFes~~~~~~~~~~NPA~~mLevi~~~~~~~------------~~~D~a~~w~~S~e~k~~~ 1075 (1391)
T KOG0065|consen 1008 GQTVYFGPLGENSSKLIEYFESIGGVKCISDENPAEWMLEVIGAGAEAS------------LSVDFAEIWKNSEEYKRNK 1075 (1391)
T ss_pred CeEEEecCcccccHHHHHHHHhcCCccCCCCCChHHHHHhhcccccccc------------cCccHHHHHhccHHHHHHH
Confidence 8999999975 4678999987 899999999999999987643321 1238999999999999887
Q ss_pred hhhc---CCCCCCCCCCCCccccccCCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccccCCCCCcc
Q 002833 495 SDLR---VPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMN 571 (875)
Q Consensus 495 ~~l~---~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~gt~F~~~~~~~~~~~ 571 (875)
++++ .+... .......+++|+.|+|.|++.|++|+++..||+|.+...|++.+++.||++|+.||+++ .+++
T Consensus 1076 e~v~~l~~~~~~--~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g---~~~q 1150 (1391)
T KOG0065|consen 1076 ELVKELSQPPPG--FSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVG---HNVQ 1150 (1391)
T ss_pred HHHHHHhcCCcc--CCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecC---CcHH
Confidence 6654 44332 12334456779999999999999999999999999999999999999999999999998 3567
Q ss_pred cchhHHHHHHHHHHHHHHH-HHHHHHHHhhhhhHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCc
Q 002833 572 GGSRYFGALFFSLLNIMFN-GFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDP 650 (875)
Q Consensus 572 ~~~~~~g~lFf~~~~~~~~-~~~el~~~~~~rpvf~kqr~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Y~m~Gl~~ 650 (875)
+.++.+|++|.++++..-+ +-...+..-.+|-++||||..++|+..+|++|++++|+|+.++++++|.+++|||+||..
T Consensus 1151 ~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~ 1230 (1391)
T KOG0065|consen 1151 GLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYW 1230 (1391)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchh
Confidence 8889999999887765443 223445555789999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHhHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhhCHHHHHHHHH
Q 002833 651 AASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSL 730 (875)
Q Consensus 651 ~~~~Ff~f~l~l~l~~~~~~~lf~~iaa~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~w~~W~~~isP~~Ya~~al 730 (875)
++++|+.||+..++..++...++.++.+++||..+|..+.++++.++.+|+||++|++.||.||+|+||+||+.|-.++|
T Consensus 1231 ~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gl 1310 (1391)
T KOG0065|consen 1231 TASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGL 1310 (1391)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCccccCCCCCC----CccccccceeecccC----ccccCcchhhhHHHHHHHHHHHHHHHHHHHHhcC
Q 002833 731 LVNEFLGGRWDAQNKDPS----INQPTIGKVLLKIRG----FSTESNWYWIGVGALTGYSFLFNFLFIAALAYLN 797 (875)
Q Consensus 731 ~~NEf~~~~~~~~~~~~~----~~~~~~G~~~L~~~g----~~~~~~~~w~~~giL~g~~~~f~~l~~l~L~~~~ 797 (875)
+.-++++..-.|...+-. .++.+.|+.+-..+| +..+..-+ ...+.++|.+++.+++.+.++|.+
T Consensus 1311 i~~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~a~--~~c~~c~y~v~~~~l~~f~~~y~~ 1383 (1391)
T KOG0065|consen 1311 ISSQLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNPLAT--TACVYCAYTVADAFLAAFNIKYLN 1383 (1391)
T ss_pred HHHHhCCCceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccCcce--eEEEEeeeehHHHHHHHHHHHHHH
Confidence 999999877666322100 133455665555566 54443322 234566788888888888888765
No 10
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-46 Score=378.80 Aligned_cols=222 Identities=26% Similarity=0.400 Sum_probs=191.6
Q ss_pred cccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCC----ccCceEEEEecCCCCC
Q 002833 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF----VPQRTCAYISQHDLHH 257 (875)
Q Consensus 182 ~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~----~~~~~~~yv~Q~d~~~ 257 (875)
+..++|+|||+.|++||+++|+|||||||||||+||.|+..++ +|+|.++|.++... ..++.+|+|+|+..+|
T Consensus 13 g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLF 89 (240)
T COG1126 13 GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLF 89 (240)
T ss_pred CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhcCeeccccccc
Confidence 4678999999999999999999999999999999999999997 99999999876421 2367899999999999
Q ss_pred CCCCHHHHHHHhhhh-cCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCcccccccc
Q 002833 258 GEMTVRETLDFSGRC-LGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (875)
Q Consensus 258 ~~lTV~EtL~f~a~~-~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (875)
|++||.||+.++... ++. ++ .+.+....++|+.+||.+.+|.++.
T Consensus 90 PHlTvleNv~lap~~v~~~----------~k------------------------~eA~~~A~~lL~~VGL~~ka~~yP~ 135 (240)
T COG1126 90 PHLTVLENVTLAPVKVKKL----------SK------------------------AEAREKALELLEKVGLADKADAYPA 135 (240)
T ss_pred ccchHHHHHHhhhHHHcCC----------CH------------------------HHHHHHHHHHHHHcCchhhhhhCcc
Confidence 999999999987531 111 11 1223456779999999999998776
Q ss_pred CccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEE
Q 002833 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (875)
Q Consensus 337 ~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vil 416 (875)
.|||||||||+|||||+.+|+++++|||||+|||....++.+.++++++ .|.|+++.+|. ..-+.+.+|||+.
T Consensus 136 -----qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~-eGmTMivVTHE-M~FAr~VadrviF 208 (240)
T COG1126 136 -----QLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMIIVTHE-MGFAREVADRVIF 208 (240)
T ss_pred -----ccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH-cCCeEEEEech-hHHHHHhhheEEE
Confidence 4999999999999999999999999999999999999999999999998 58999998765 4467789999999
Q ss_pred EeCCeEEEecChhhHHHHHHHcCCCCCCCCCHHHHHHHh
Q 002833 417 LSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEV 455 (875)
Q Consensus 417 L~~G~iv~~Gp~~~~~~~F~~~Gf~~p~~~~~adfl~~v 455 (875)
|++|+++.+|+++++ |..|.+..+.+||..+
T Consensus 209 md~G~iie~g~p~~~--------f~~p~~~R~~~FL~~i 239 (240)
T COG1126 209 MDQGKIIEEGPPEEF--------FDNPKSERTRQFLSKI 239 (240)
T ss_pred eeCCEEEEecCHHHH--------hcCCCCHHHHHHHHhh
Confidence 999999999999887 5678877788888654
No 11
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.8e-45 Score=382.42 Aligned_cols=224 Identities=27% Similarity=0.371 Sum_probs=198.9
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc------CceEEEEecCCCC
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP------QRTCAYISQHDLH 256 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~------~~~~~yv~Q~d~~ 256 (875)
...+|+|||++|++||+++|+|+||||||||++++.++..|+ +|+|.++|+++..... ++.+|+|+|+..+
T Consensus 18 ~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnL 94 (339)
T COG1135 18 TVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNL 94 (339)
T ss_pred ceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChHHHHHHHhhccEEeccccc
Confidence 457999999999999999999999999999999999999997 9999999988876532 5789999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCcccccccc
Q 002833 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (875)
Q Consensus 257 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (875)
+...||.||++|.++..+.. +.+ .+.++.++|+.+||++.+|..+.
T Consensus 95 LssrTV~~NvA~PLeiag~~----------k~e------------------------i~~RV~elLelVgL~dk~~~yP~ 140 (339)
T COG1135 95 LSSRTVFENVAFPLELAGVP----------KAE------------------------IKQRVAELLELVGLSDKADRYPA 140 (339)
T ss_pred cccchHHhhhhhhHhhcCCC----------HHH------------------------HHHHHHHHHHHcCChhhhccCch
Confidence 99999999999998877642 111 23467889999999999988776
Q ss_pred CccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEE
Q 002833 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (875)
Q Consensus 337 ~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vil 416 (875)
+ |||||||||+|||||+.+|+||++|||||+|||.|+..|+++|+++.++.|.|+++..|+ .+-+-++||||.|
T Consensus 141 q-----LSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHE-m~Vvk~ic~rVav 214 (339)
T COG1135 141 Q-----LSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHE-MEVVKRICDRVAV 214 (339)
T ss_pred h-----cCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEech-HHHHHHHhhhheE
Confidence 5 999999999999999999999999999999999999999999999999999999998776 4577889999999
Q ss_pred EeCCeEEEecChhhHHHHHHHcCCCCCCCCCHHHHHHHhcc
Q 002833 417 LSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTS 457 (875)
Q Consensus 417 L~~G~iv~~Gp~~~~~~~F~~~Gf~~p~~~~~adfl~~v~s 457 (875)
|++|+++++|+..++ |..|.+.-.-.|+.+...
T Consensus 215 m~~G~lvE~G~v~~v--------F~~Pk~~~t~~fi~~~~~ 247 (339)
T COG1135 215 LDQGRLVEEGTVSEV--------FANPKHAITQEFIGETLE 247 (339)
T ss_pred eeCCEEEEeccHHHh--------hcCcchHHHHHHHHhhcc
Confidence 999999999999988 567877777777776654
No 12
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.9e-44 Score=392.11 Aligned_cols=221 Identities=31% Similarity=0.452 Sum_probs=190.1
Q ss_pred cccCCcccccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCC--ccCceEEEEec
Q 002833 175 HLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF--VPQRTCAYISQ 252 (875)
Q Consensus 175 ~~~~~~~~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~--~~~~~~~yv~Q 252 (875)
++.+.+...+.+|+|||+.|++|++++|+||||||||||||+|+|+.+|+ +|+|.++|.+.... ..++.+||++|
T Consensus 9 ~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~---~G~i~i~G~~~~~~~~~~~~~igy~~~ 85 (293)
T COG1131 9 NLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAKVRRRIGYVPQ 85 (293)
T ss_pred ceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEEcCEeCccCHHHHHhheEEEcc
Confidence 34333332578999999999999999999999999999999999999996 99999999987652 23578999999
Q ss_pred CCCCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCcccc
Q 002833 253 HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICAD 332 (875)
Q Consensus 253 ~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~d 332 (875)
++.+++.|||+|+|.|.+++++.... .....++++++.+||.+..+
T Consensus 86 ~~~~~~~lT~~e~l~~~~~l~~~~~~----------------------------------~~~~~~~~~l~~~~L~~~~~ 131 (293)
T COG1131 86 EPSLYPELTVRENLEFFARLYGLSKE----------------------------------EAEERIEELLELFGLEDKAN 131 (293)
T ss_pred CCCCCccccHHHHHHHHHHHhCCChh----------------------------------HHHHHHHHHHHHcCCchhhC
Confidence 99999999999999999998865310 01234688999999998555
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcC
Q 002833 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (875)
Q Consensus 333 t~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD 412 (875)
++++ +||+||||||+||.||+++|++|||||||+|||+.++.++.+.|+++++..+.||++++|++ .++.++||
T Consensus 132 ~~~~-----~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l-~e~~~~~d 205 (293)
T COG1131 132 KKVR-----TLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHIL-EEAEELCD 205 (293)
T ss_pred cchh-----hcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcH-HHHHHhCC
Confidence 5554 69999999999999999999999999999999999999999999999986457999987665 58889999
Q ss_pred eEEEEeCCeEEEecChhhHHHHHHHc
Q 002833 413 DIILLSEGQIVYQGPRDNVLEFFEHM 438 (875)
Q Consensus 413 ~vilL~~G~iv~~Gp~~~~~~~F~~~ 438 (875)
+|++|++|++++.|+.+++...+...
T Consensus 206 ~v~il~~G~~~~~g~~~~l~~~~~~~ 231 (293)
T COG1131 206 RVIILNDGKIIAEGTPEELKEKFGGK 231 (293)
T ss_pred EEEEEeCCEEEEeCCHHHHHHhhccC
Confidence 99999999999999999987766543
No 13
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-44 Score=394.91 Aligned_cols=226 Identities=29% Similarity=0.385 Sum_probs=200.6
Q ss_pred cccCCcccccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc-CceEEEEecC
Q 002833 175 HLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQH 253 (875)
Q Consensus 175 ~~~~~~~~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~~~yv~Q~ 253 (875)
++.+.+.... +|+|+|+.|++||+++|+|||||||||||++|||+.+|+ +|+|.++|.+++...| +|.+++|+|+
T Consensus 8 ~v~K~yg~~~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~P~~R~iamVFQ~ 83 (338)
T COG3839 8 NVRKSFGSFE-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPEKRGIAMVFQN 83 (338)
T ss_pred eeEEEcCCce-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhHCCEEEEeCC
Confidence 3444443323 999999999999999999999999999999999999997 9999999999999877 4889999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccc
Q 002833 254 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (875)
Q Consensus 254 d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 333 (875)
..+||+|||+||+.|+++.++... . +.+.+++++.+.|+|+|..|.
T Consensus 84 yALyPhmtV~~Niaf~Lk~~~~~k----------~------------------------ei~~rV~eva~~L~l~~lL~r 129 (338)
T COG3839 84 YALYPHMTVYENIAFGLKLRGVPK----------A------------------------EIDKRVKEVAKLLGLEHLLNR 129 (338)
T ss_pred ccccCCCcHHHHhhhhhhhCCCch----------H------------------------HHHHHHHHHHHHcCChhHHhc
Confidence 999999999999999998775421 1 123457889999999999998
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCe
Q 002833 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (875)
Q Consensus 334 ~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~ 413 (875)
++. +|||||||||++||||+.+|++++||||.|.||+..+.++...|+++.+..+.|+|..+|+ ..|+..++|+
T Consensus 130 ~P~-----~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHD-q~EAmtladr 203 (338)
T COG3839 130 KPL-----QLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHD-QVEAMTLADR 203 (338)
T ss_pred Ccc-----cCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCC-HHHHHhhCCE
Confidence 875 5999999999999999999999999999999999999999999999998889999988765 4589999999
Q ss_pred EEEEeCCeEEEecChhhHHHHHHHcCCCCCCCCCHHHHH
Q 002833 414 IILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452 (875)
Q Consensus 414 vilL~~G~iv~~Gp~~~~~~~F~~~Gf~~p~~~~~adfl 452 (875)
|.+|++|++...|++.++ |..|.+.-+|+|+
T Consensus 204 i~Vm~~G~i~Q~g~p~el--------y~~P~n~fVA~Fi 234 (338)
T COG3839 204 IVVMNDGRIQQVGTPLEL--------YERPANLFVAGFI 234 (338)
T ss_pred EEEEeCCeeeecCChHHH--------hhCccchhhhhhc
Confidence 999999999999999998 5678888888886
No 14
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=3.9e-44 Score=393.19 Aligned_cols=223 Identities=29% Similarity=0.419 Sum_probs=200.5
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc-CceEEEEecCCCCCCCCC
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMT 261 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lT 261 (875)
...+|+|||+.|++||++.|||||||||||||++|||+..|+ +|+|.++|++++...+ +|.+++|+|+-.+||+||
T Consensus 17 ~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHlt 93 (352)
T COG3842 17 DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMT 93 (352)
T ss_pred CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhhcccceeecCcccCCCCc
Confidence 678999999999999999999999999999999999999997 9999999999998776 588999999999999999
Q ss_pred HHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCC
Q 002833 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (875)
Q Consensus 262 V~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (875)
|+||+.|+++.+.... + .+...+++++|+.++|++.++..+.
T Consensus 94 V~~NVafGLk~~~~~~---------~------------------------~~i~~rv~e~L~lV~L~~~~~R~p~----- 135 (352)
T COG3842 94 VEENVAFGLKVRKKLK---------K------------------------AEIKARVEEALELVGLEGFADRKPH----- 135 (352)
T ss_pred HHHHhhhhhhhcCCCC---------H------------------------HHHHHHHHHHHHHcCchhhhhhChh-----
Confidence 9999999987433210 0 0123467889999999998887765
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCe
Q 002833 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (875)
Q Consensus 342 gLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~ 421 (875)
.|||||+|||++||||+.+|++||||||.|+||..-+.++..-|+++.++.|.|.|+.+|+ ..|.+.++|+|.+|++|+
T Consensus 136 qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHD-qeEAl~msDrI~Vm~~G~ 214 (352)
T COG3842 136 QLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHD-QEEALAMSDRIAVMNDGR 214 (352)
T ss_pred hhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECC-HHHHhhhccceEEccCCc
Confidence 4999999999999999999999999999999999999999999999999999999998765 568999999999999999
Q ss_pred EEEecChhhHHHHHHHcCCCCCCCCCHHHHHHHh
Q 002833 422 IVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEV 455 (875)
Q Consensus 422 iv~~Gp~~~~~~~F~~~Gf~~p~~~~~adfl~~v 455 (875)
|...|+++++ |..|...-+|||+-+.
T Consensus 215 I~Q~gtP~ei--------Y~~P~~~fVA~FiG~~ 240 (352)
T COG3842 215 IEQVGTPEEI--------YERPATRFVADFIGES 240 (352)
T ss_pred eeecCCHHHH--------hhCcchHHHHHHhCcc
Confidence 9999999999 6789888999998653
No 15
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.4e-43 Score=373.65 Aligned_cols=211 Identities=28% Similarity=0.420 Sum_probs=183.7
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCC
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGE 259 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~ 259 (875)
++.||+|+|+.|++|++++|+||||||||||||+|+|.++|. +|+|.++|+++..+.. .+.++||+|.....+.
T Consensus 14 ~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~ 90 (258)
T COG1120 14 GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFG 90 (258)
T ss_pred CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCC
Confidence 567999999999999999999999999999999999999997 9999999999987654 4789999999988899
Q ss_pred CCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCcc
Q 002833 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (875)
Q Consensus 260 lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (875)
+||+|-+.++..-+... +... ..++...++..|+.+|+.+.++..+.+
T Consensus 91 ~tV~d~V~~GR~p~~~~-----~~~~-------------------------~~~D~~~v~~aL~~~~~~~la~r~~~~-- 138 (258)
T COG1120 91 LTVYELVLLGRYPHLGL-----FGRP-------------------------SKEDEEIVEEALELLGLEHLADRPVDE-- 138 (258)
T ss_pred cEEeehHhhcCCccccc-----ccCC-------------------------CHhHHHHHHHHHHHhCcHHHhcCcccc--
Confidence 99999998874321100 0000 111223577889999999999988875
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeC
Q 002833 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (875)
Q Consensus 340 ~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~ 419 (875)
|||||||||.||+||+.+|++|+||||||.||...+.++++.+++++++.|.|+|+++|++ ..+.++||++++|++
T Consensus 139 ---LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDl-N~A~ryad~~i~lk~ 214 (258)
T COG1120 139 ---LSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDL-NLAARYADHLILLKD 214 (258)
T ss_pred ---cChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999999999999999988899999987665 578899999999999
Q ss_pred CeEEEecChhhHH
Q 002833 420 GQIVYQGPRDNVL 432 (875)
Q Consensus 420 G~iv~~Gp~~~~~ 432 (875)
|+++++|++++++
T Consensus 215 G~i~a~G~p~evl 227 (258)
T COG1120 215 GKIVAQGTPEEVL 227 (258)
T ss_pred CeEEeecCcchhc
Confidence 9999999998774
No 16
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=5e-43 Score=359.44 Aligned_cols=208 Identities=27% Similarity=0.414 Sum_probs=186.8
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCC
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGE 259 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~ 259 (875)
.+.+++|+|++|++||++.++|||||||||+||+|.++.+|+ +|+|.+||+++.+... ++.+|||-|+-.+||+
T Consensus 13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh 89 (309)
T COG1125 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPH 89 (309)
T ss_pred CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHHHHHHhhhhhhhhcccCCC
Confidence 677999999999999999999999999999999999999997 9999999999987644 6899999999999999
Q ss_pred CCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCc--cccccccC
Q 002833 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI--CADTMVGD 337 (875)
Q Consensus 260 lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~--~~dt~vg~ 337 (875)
+||.||+.+-..+.+... . +.+.+++++|+.+||+. .++.
T Consensus 90 ~Tv~eNIa~VP~L~~w~k----------~------------------------~i~~r~~ELl~lvgL~p~~~~~R---- 131 (309)
T COG1125 90 LTVAENIATVPKLLGWDK----------E------------------------RIKKRADELLDLVGLDPSEYADR---- 131 (309)
T ss_pred ccHHHHHHhhhhhcCCCH----------H------------------------HHHHHHHHHHHHhCCCHHHHhhc----
Confidence 999999999877665431 1 12345789999999975 5554
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEE
Q 002833 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (875)
Q Consensus 338 ~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL 417 (875)
+++.|||||+|||.+||||+.+|++|+||||+++|||.++.++.+.++++.++.++|+|+.+ |..+|++.++|||.+|
T Consensus 132 -yP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVT-HDidEA~kLadri~vm 209 (309)
T COG1125 132 -YPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVT-HDIDEALKLADRIAVM 209 (309)
T ss_pred -CchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEe-cCHHHHHhhhceEEEe
Confidence 45569999999999999999999999999999999999999999999999999999999976 5678999999999999
Q ss_pred eCCeEEEecChhhHHH
Q 002833 418 SEGQIVYQGPRDNVLE 433 (875)
Q Consensus 418 ~~G~iv~~Gp~~~~~~ 433 (875)
++|+++..+++++++.
T Consensus 210 ~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 210 DAGEIVQYDTPDEILA 225 (309)
T ss_pred cCCeEEEeCCHHHHHh
Confidence 9999999999999853
No 17
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.4e-43 Score=357.14 Aligned_cols=227 Identities=26% Similarity=0.338 Sum_probs=190.0
Q ss_pred hhccccCCcccccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc------Cc
Q 002833 172 GLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP------QR 245 (875)
Q Consensus 172 ~~~~~~~~~~~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~------~~ 245 (875)
++.++.+.++.++++|+|||+.|++|||++|+|||||||||||++|+|+.+++ +|+|.+||.++..... ++
T Consensus 5 ~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t---~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 5 EVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred EEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCC---cceEEecccchhccchHHHHHHHH
Confidence 33444455656788999999999999999999999999999999999999987 9999999988765432 47
Q ss_pred eEEEEecCCCCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHh
Q 002833 246 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL 325 (875)
Q Consensus 246 ~~~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l 325 (875)
.+||++|+..+.+.+||.+|+..+..-+... ...++.-.+++ .+..+-+.|+.+
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~-~~slfglfsk~-------------------------dk~~Al~aLerv 135 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTST-WRSLFGLFSKE-------------------------DKAQALDALERV 135 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchH-HHHHhCCCCHH-------------------------HHHHHHHHHHHc
Confidence 8999999999999999999998874332110 01111111122 223345688999
Q ss_pred CCCccccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCch
Q 002833 326 GLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAP 405 (875)
Q Consensus 326 gL~~~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ 405 (875)
|+.+.+.++.+. |||||+|||+|||+|+.+|++++.|||++.||+.++.++|+.|++++++.|.|+|+.+||- +
T Consensus 136 gi~~~A~qra~~-----LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~v-d 209 (258)
T COG3638 136 GILDKAYQRAST-----LSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQV-D 209 (258)
T ss_pred CcHHHHHHHhcc-----CCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechH-H
Confidence 999999988876 9999999999999999999999999999999999999999999999999999999998774 4
Q ss_pred hHHhhcCeEEEEeCCeEEEecChhhHHH
Q 002833 406 ETYDLFDDIILLSEGQIVYQGPRDNVLE 433 (875)
Q Consensus 406 ei~~lfD~vilL~~G~iv~~Gp~~~~~~ 433 (875)
-+.++||||+-|++|+|+|+||++++.+
T Consensus 210 lA~~Y~~Riigl~~G~ivfDg~~~el~~ 237 (258)
T COG3638 210 LAKKYADRIIGLKAGRIVFDGPASELTD 237 (258)
T ss_pred HHHHHHhhheEecCCcEEEeCChhhhhH
Confidence 7789999999999999999999988654
No 18
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-42 Score=365.58 Aligned_cols=224 Identities=29% Similarity=0.467 Sum_probs=193.2
Q ss_pred cccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCE---eCCCCcc-CceEEEEecCCCCC
Q 002833 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGH---ELNEFVP-QRTCAYISQHDLHH 257 (875)
Q Consensus 182 ~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~---~~~~~~~-~~~~~yv~Q~d~~~ 257 (875)
+...+++|||+.|+.||+++|+|||||||||||++|||+..|+ +|.|.+||+ +.+.... .|.+|||+|+..+|
T Consensus 13 ~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF 89 (345)
T COG1118 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALF 89 (345)
T ss_pred ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhccchhhcceeEEEechhhc
Confidence 4567899999999999999999999999999999999999997 999999999 5555333 48899999999999
Q ss_pred CCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccC
Q 002833 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (875)
Q Consensus 258 ~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (875)
++|||.+|+.|+++++... |.. .+.+.+++++|+.+.|++.++.++-
T Consensus 90 ~HmtVa~NIAFGl~~~~~~-------------------p~~-------------~~~r~rv~elL~lvqL~~la~ryP~- 136 (345)
T COG1118 90 PHMTVADNIAFGLKVRKER-------------------PSE-------------AEIRARVEELLRLVQLEGLADRYPA- 136 (345)
T ss_pred ccchHHhhhhhcccccccC-------------------CCh-------------hhHHHHHHHHHHHhcccchhhcCch-
Confidence 9999999999999876211 100 1123457889999999998876654
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEE
Q 002833 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (875)
Q Consensus 338 ~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL 417 (875)
.|||||||||++||||+..|++|+||||+++||..-+.++.+.|+++.+..+.|+++++| +.+|++++||+|++|
T Consensus 137 ----QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTH-D~eea~~ladrvvvl 211 (345)
T COG1118 137 ----QLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTH-DQEEALELADRVVVL 211 (345)
T ss_pred ----hcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeC-CHHHHHhhcceEEEe
Confidence 599999999999999999999999999999999999999999999999888999988765 456999999999999
Q ss_pred eCCeEEEecChhhHHHHHHHcCCCCCCCCCHHHHHHH
Q 002833 418 SEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQE 454 (875)
Q Consensus 418 ~~G~iv~~Gp~~~~~~~F~~~Gf~~p~~~~~adfl~~ 454 (875)
++|+|...||++++ |..|...-+..|+=+
T Consensus 212 ~~G~Ieqvg~p~ev--------~~~P~s~fV~~f~G~ 240 (345)
T COG1118 212 NQGRIEQVGPPDEV--------YDHPASRFVARFLGE 240 (345)
T ss_pred cCCeeeeeCCHHHH--------hcCCCccceeccccc
Confidence 99999999999998 456776666666544
No 19
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3.6e-42 Score=356.42 Aligned_cols=195 Identities=26% Similarity=0.399 Sum_probs=171.7
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc-------CceEEEEecCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHDLH 256 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~-------~~~~~yv~Q~d~~ 256 (875)
.++|++||+.|++||+++|+|||||||||||++|+|+.+|+ +|+|.++|+++..... ++.+|||+|+..+
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt---~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nL 94 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT---SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNL 94 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCC
Confidence 67999999999999999999999999999999999999997 9999999998875532 3679999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCcccc-ccc
Q 002833 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICAD-TMV 335 (875)
Q Consensus 257 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~d-t~v 335 (875)
+|++||+||+.+.+...+.... ......+.+++.+||.+..+ ..+
T Consensus 95 l~~ltv~ENv~lpl~~~~~~~~----------------------------------~~~~~~~~l~~~lgl~~~~~~~~p 140 (226)
T COG1136 95 LPDLTVLENVELPLLIAGKSAG----------------------------------RRKRAAEELLEVLGLEDRLLKKKP 140 (226)
T ss_pred CCCCCHHHHHHhHHHHcCCChh----------------------------------HHHHHHHHHHHhcCChhhhccCCc
Confidence 9999999999988766543210 01224577899999997666 666
Q ss_pred cCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEE
Q 002833 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (875)
Q Consensus 336 g~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vi 415 (875)
. .|||||||||+|||||+.+|++++.||||..||+.++..++++|++++++.|.|+|+++|.| ++...|||++
T Consensus 141 ~-----eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i 213 (226)
T COG1136 141 S-----ELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVI 213 (226)
T ss_pred h-----hcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEE
Confidence 5 49999999999999999999999999999999999999999999999988899999998865 6888999999
Q ss_pred EEeCCeE
Q 002833 416 LLSEGQI 422 (875)
Q Consensus 416 lL~~G~i 422 (875)
.|.+|++
T Consensus 214 ~l~dG~~ 220 (226)
T COG1136 214 ELKDGKI 220 (226)
T ss_pred EEeCCee
Confidence 9999994
No 20
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-42 Score=358.34 Aligned_cols=195 Identities=26% Similarity=0.352 Sum_probs=173.6
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHH
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (875)
..+|+|||++|.+||+++|+||||||||||||+|||+.+|+ +|+|.++|.++. .+...++||+|++.++|.+||+
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v~--~p~~~~~~vFQ~~~LlPW~Tv~ 90 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVT--GPGPDIGYVFQEDALLPWLTVL 90 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCcccC--CCCCCEEEEeccCcccchhhHH
Confidence 67999999999999999999999999999999999999997 999999999984 3567899999999999999999
Q ss_pred HHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCC
Q 002833 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (875)
Q Consensus 264 EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (875)
||+.|+...++.. +.| ...+++++|+.+||.+..|..+. .|
T Consensus 91 ~NV~l~l~~~~~~----------~~e------------------------~~~~a~~~L~~VgL~~~~~~~P~-----qL 131 (248)
T COG1116 91 DNVALGLELRGKS----------KAE------------------------ARERAKELLELVGLAGFEDKYPH-----QL 131 (248)
T ss_pred hhheehhhccccc----------hHh------------------------HHHHHHHHHHHcCCcchhhcCcc-----cc
Confidence 9999998776521 111 12246789999999999887765 59
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeC--Ce
Q 002833 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE--GQ 421 (875)
Q Consensus 344 SGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~--G~ 421 (875)
||||||||+|||||+.+|++|+||||++.||+.|+.++.+.|.++.++.+.|+++.+| ..+|+..++|||++|++ |+
T Consensus 132 SGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTH-di~EAv~LsdRivvl~~~P~~ 210 (248)
T COG1116 132 SGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTH-DVDEAVYLADRVVVLSNRPGR 210 (248)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeC-CHHHHHhhhCEEEEecCCCcc
Confidence 9999999999999999999999999999999999999999999999988999999765 56688999999999998 55
Q ss_pred EE
Q 002833 422 IV 423 (875)
Q Consensus 422 iv 423 (875)
|.
T Consensus 211 i~ 212 (248)
T COG1116 211 IG 212 (248)
T ss_pred ee
Confidence 53
No 21
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3.2e-42 Score=352.33 Aligned_cols=209 Identities=24% Similarity=0.371 Sum_probs=180.9
Q ss_pred cccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc------CceEEEEecCCC
Q 002833 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP------QRTCAYISQHDL 255 (875)
Q Consensus 182 ~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~------~~~~~yv~Q~d~ 255 (875)
+.+.||+|||+.|++||+++|+||||||||||||+|.|+++|+ +|+|.++|+++..... ++.+|+++|+-.
T Consensus 19 G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gA 95 (263)
T COG1127 19 GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGA 95 (263)
T ss_pred CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhccCHHHHHHHHhheeEEeeccc
Confidence 4678999999999999999999999999999999999999997 9999999999865432 467999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCcc-cccc
Q 002833 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDIC-ADTM 334 (875)
Q Consensus 256 ~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~-~dt~ 334 (875)
+|..|||+||+.|..+-+.. +.+++ .+..+..-|+..||... +|.
T Consensus 96 LFssltV~eNVafplre~~~---------lp~~~------------------------i~~lv~~KL~~VGL~~~~~~~- 141 (263)
T COG1127 96 LFSSLTVFENVAFPLREHTK---------LPESL------------------------IRELVLMKLELVGLRGAAADL- 141 (263)
T ss_pred cccccchhHhhheehHhhcc---------CCHHH------------------------HHHHHHHHHHhcCCChhhhhh-
Confidence 99999999999998654321 11111 11234445788999876 554
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeE
Q 002833 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (875)
Q Consensus 335 vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~v 414 (875)
++..||||++|||++||||+.+|+++|+||||+||||.++..|.++++++.+..+.|+++.+|+ .++++..||++
T Consensus 142 ----~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHD-l~s~~~i~Drv 216 (263)
T COG1127 142 ----YPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHD-LDSLLTIADRV 216 (263)
T ss_pred ----CchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECC-hHHHHhhhceE
Confidence 4556999999999999999999999999999999999999999999999999999999998755 56899999999
Q ss_pred EEEeCCeEEEecChhhHH
Q 002833 415 ILLSEGQIVYQGPRDNVL 432 (875)
Q Consensus 415 ilL~~G~iv~~Gp~~~~~ 432 (875)
++|.+|+|+.+|+++++.
T Consensus 217 ~~L~~gkv~~~Gt~~el~ 234 (263)
T COG1127 217 AVLADGKVIAEGTPEELL 234 (263)
T ss_pred EEEeCCEEEEeCCHHHHH
Confidence 999999999999999875
No 22
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-42 Score=343.80 Aligned_cols=217 Identities=30% Similarity=0.365 Sum_probs=190.8
Q ss_pred hccccCCcccccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc--cCceEEEE
Q 002833 173 LLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYI 250 (875)
Q Consensus 173 ~~~~~~~~~~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~--~~~~~~yv 250 (875)
+.++.++++...++++||||+++.||+++|+|||||||||+|++|++++.|+ +|+|+++|.+..+.. .++.+|.+
T Consensus 4 v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~vrr~IGVl 80 (245)
T COG4555 4 VTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFVRRKIGVL 80 (245)
T ss_pred eeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHHHhhhccee
Confidence 3445556655566999999999999999999999999999999999999997 999999999875432 26889999
Q ss_pred ecCCCCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCcc
Q 002833 251 SQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDIC 330 (875)
Q Consensus 251 ~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~ 330 (875)
+.+..++..||++|||.|-+++.+. ++.+ .+.+++++.+.|+|..|
T Consensus 81 ~~e~glY~RlT~rEnl~~Fa~L~~l----------~~~~------------------------~kari~~l~k~l~l~~~ 126 (245)
T COG4555 81 FGERGLYARLTARENLKYFARLNGL----------SRKE------------------------IKARIAELSKRLQLLEY 126 (245)
T ss_pred cCCcChhhhhhHHHHHHHHHHHhhh----------hhhH------------------------HHHHHHHHHHHhChHHH
Confidence 9888999999999999999887654 2222 23457889999999999
Q ss_pred ccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhh
Q 002833 331 ADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL 410 (875)
Q Consensus 331 ~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~l 410 (875)
.|+.+|+ +|-|+||||+|||||+.+|+++++||||||||..+...+.+.++++.. .|+++|.+. |..+|+..+
T Consensus 127 ~~rRv~~-----~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~-egr~viFSS-H~m~Eveal 199 (245)
T COG4555 127 LDRRVGE-----FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN-EGRAVIFSS-HIMQEVEAL 199 (245)
T ss_pred HHHHHhh-----hchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhc-CCcEEEEec-ccHHHHHHh
Confidence 9999986 999999999999999999999999999999999999999999999875 588999986 567899999
Q ss_pred cCeEEEEeCCeEEEecChhhHHH
Q 002833 411 FDDIILLSEGQIVYQGPRDNVLE 433 (875)
Q Consensus 411 fD~vilL~~G~iv~~Gp~~~~~~ 433 (875)
||+|++|++|++|+.|+++++..
T Consensus 200 CDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 200 CDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred hheEEEEecCcEEEcCCHHHHHH
Confidence 99999999999999999987753
No 23
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-41 Score=381.64 Aligned_cols=207 Identities=26% Similarity=0.362 Sum_probs=181.9
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc-CceEEEEecCCCCCCCCC
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMT 261 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lT 261 (875)
.+.+|+|+|+.|++||+++|+|||||||||||++|+|+.+|+ +|+|.++|+++....+ ++.++||+|+..++|++|
T Consensus 16 ~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~t 92 (356)
T PRK11650 16 KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT---SGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMS 92 (356)
T ss_pred CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCccccCCCC
Confidence 356999999999999999999999999999999999999986 9999999999876544 478999999999999999
Q ss_pred HHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCC
Q 002833 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (875)
Q Consensus 262 V~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (875)
|+||+.|+.+.++.. +. +....++++++.+||++..+..++
T Consensus 93 v~eNi~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gL~~~~~~~~~----- 133 (356)
T PRK11650 93 VRENMAYGLKIRGMP----------KA------------------------EIEERVAEAARILELEPLLDRKPR----- 133 (356)
T ss_pred HHHHHHhHHhhcCCC----------HH------------------------HHHHHHHHHHHHcCChhHhhCChh-----
Confidence 999999986543211 00 012246778999999998887776
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCe
Q 002833 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (875)
Q Consensus 342 gLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~ 421 (875)
.|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+..+.|+|+++|++ .++.+++|+|++|++|+
T Consensus 134 ~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~l~D~i~vl~~G~ 212 (356)
T PRK11650 134 ELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQ-VEAMTLADRVVVMNGGV 212 (356)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCE
Confidence 49999999999999999999999999999999999999999999999876688999987765 57899999999999999
Q ss_pred EEEecChhhHH
Q 002833 422 IVYQGPRDNVL 432 (875)
Q Consensus 422 iv~~Gp~~~~~ 432 (875)
++..|+++++.
T Consensus 213 i~~~g~~~~~~ 223 (356)
T PRK11650 213 AEQIGTPVEVY 223 (356)
T ss_pred EEEECCHHHHH
Confidence 99999998873
No 24
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=1.9e-41 Score=378.99 Aligned_cols=218 Identities=28% Similarity=0.437 Sum_probs=187.6
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc-CceEEEEecCCCCCCCCCH
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 262 (875)
+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|+++....+ ++.++||+|+..+||++||
T Consensus 17 ~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv 93 (353)
T TIGR03265 17 FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTV 93 (353)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcH
Confidence 56999999999999999999999999999999999999987 9999999999876543 4779999999999999999
Q ss_pred HHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCC
Q 002833 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (875)
Q Consensus 263 ~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (875)
+||+.|+.+.++.. +.+ ....++++++.+||++..|..+. .
T Consensus 94 ~eNi~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~l~L~~~~~~~~~-----~ 134 (353)
T TIGR03265 94 ADNIAYGLKNRGMG----------RAE------------------------VAERVAELLDLVGLPGSERKYPG-----Q 134 (353)
T ss_pred HHHHHHHHHhcCCC----------HHH------------------------HHHHHHHHHHHcCCCchhhCChh-----h
Confidence 99999986543211 000 12246789999999998887765 4
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCeE
Q 002833 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (875)
Q Consensus 343 LSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~i 422 (875)
|||||||||+|||||+.+|++||||||++|||..++.++.+.|+++.+..+.|+|+++|++ .++..++|+|++|++|++
T Consensus 135 LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~-~ea~~l~d~i~vl~~G~i 213 (353)
T TIGR03265 135 LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQ-EEALSMADRIVVMNHGVI 213 (353)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999887789999987765 588999999999999999
Q ss_pred EEecChhhHHHHHHHcCCCCCCCCCHHHHH
Q 002833 423 VYQGPRDNVLEFFEHMGFKCPERKGVADFL 452 (875)
Q Consensus 423 v~~Gp~~~~~~~F~~~Gf~~p~~~~~adfl 452 (875)
++.|+++++. ..|....+|.|+
T Consensus 214 ~~~g~~~~~~--------~~p~~~~~a~~~ 235 (353)
T TIGR03265 214 EQVGTPQEIY--------RHPATPFVADFV 235 (353)
T ss_pred EEEcCHHHHH--------hCCCCHHHHHhc
Confidence 9999998874 245544455554
No 25
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-41 Score=355.60 Aligned_cols=207 Identities=28% Similarity=0.423 Sum_probs=176.0
Q ss_pred ccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCC--CCCCCCH
Q 002833 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDL--HHGEMTV 262 (875)
Q Consensus 185 ~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~--~~~~lTV 262 (875)
++|+|||+.|++|++++|+||||||||||+|+|.|+++|. +|+|.++|++......+..+|||||... .-..+||
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~---~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV 94 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITV 94 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---cceEEEccccccccccCCeEEEcCcccccCCCCCcCH
Confidence 5999999999999999999999999999999999999997 9999999999877666678999999642 2233699
Q ss_pred HHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCC
Q 002833 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (875)
Q Consensus 263 ~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (875)
+|.+..+..-+.. .+...++ +++..++++|+.+|+.+.+|..+|.
T Consensus 95 ~d~V~~g~~~~~g-----~~~~~~~-------------------------~d~~~v~~aL~~Vgm~~~~~r~i~~----- 139 (254)
T COG1121 95 KDVVLLGRYGKKG-----WFRRLNK-------------------------KDKEKVDEALERVGMEDLRDRQIGE----- 139 (254)
T ss_pred HHHHHccCccccc-----ccccccH-------------------------HHHHHHHHHHHHcCchhhhCCcccc-----
Confidence 9999886322211 0111111 1234578899999999999999996
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCeE
Q 002833 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (875)
Q Consensus 343 LSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~i 422 (875)
|||||+|||-|||||+.+|++|+|||||+|+|+.++..|++.|+++.++ |+||+++.| +...+.++||+|++|+ +++
T Consensus 140 LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~tIl~vtH-DL~~v~~~~D~vi~Ln-~~~ 216 (254)
T COG1121 140 LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GKTVLMVTH-DLGLVMAYFDRVICLN-RHL 216 (254)
T ss_pred cCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeC-CcHHhHhhCCEEEEEc-Cee
Confidence 9999999999999999999999999999999999999999999999987 999999755 5568899999999995 578
Q ss_pred EEecChhhHH
Q 002833 423 VYQGPRDNVL 432 (875)
Q Consensus 423 v~~Gp~~~~~ 432 (875)
++.|+++++.
T Consensus 217 ~~~G~~~~~~ 226 (254)
T COG1121 217 IASGPPEEVL 226 (254)
T ss_pred EeccChhhcc
Confidence 8999998875
No 26
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-41 Score=376.84 Aligned_cols=218 Identities=24% Similarity=0.392 Sum_probs=187.6
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc-CceEEEEecCCCCCCCCCH
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 262 (875)
+.+|+|+|+.|++||+++|+|||||||||||++|+|+.+|+ +|+|.++|+++....+ ++.++||+|+..+||++||
T Consensus 19 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv 95 (351)
T PRK11432 19 NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSL 95 (351)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCH
Confidence 46999999999999999999999999999999999999997 9999999999876544 4789999999999999999
Q ss_pred HHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCC
Q 002833 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (875)
Q Consensus 263 ~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (875)
+||+.|+.+.++... . +....++++++.+||.+..|..+. .
T Consensus 96 ~eNi~~~l~~~~~~~----------~------------------------~~~~~v~~~l~~~gl~~~~~r~~~-----~ 136 (351)
T PRK11432 96 GENVGYGLKMLGVPK----------E------------------------ERKQRVKEALELVDLAGFEDRYVD-----Q 136 (351)
T ss_pred HHHHHHHHhHcCCCH----------H------------------------HHHHHHHHHHHHcCCchhhcCChh-----h
Confidence 999999876443210 0 012246778999999988877765 5
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCeE
Q 002833 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (875)
Q Consensus 343 LSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~i 422 (875)
|||||||||+|||+|+.+|++|+|||||+|||+.++.++.+.|+++.+..+.|+|+++|++ .++.+++|+|++|++|++
T Consensus 137 LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~e~~~laD~i~vm~~G~i 215 (351)
T PRK11432 137 ISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQ-SEAFAVSDTVIVMNKGKI 215 (351)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999876788999887665 588999999999999999
Q ss_pred EEecChhhHHHHHHHcCCCCCCCCCHHHHH
Q 002833 423 VYQGPRDNVLEFFEHMGFKCPERKGVADFL 452 (875)
Q Consensus 423 v~~Gp~~~~~~~F~~~Gf~~p~~~~~adfl 452 (875)
+..|+++++. ..|...-+|.|+
T Consensus 216 ~~~g~~~~~~--------~~p~~~~~a~~~ 237 (351)
T PRK11432 216 MQIGSPQELY--------RQPASRFMASFM 237 (351)
T ss_pred EEEcCHHHHH--------hCCCchHHHHhc
Confidence 9999998873 345555555554
No 27
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=4.3e-41 Score=373.99 Aligned_cols=205 Identities=25% Similarity=0.337 Sum_probs=179.3
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc------CceEEEEecCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP------QRTCAYISQHDLHH 257 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~------~~~~~yv~Q~d~~~ 257 (875)
+++|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++|++|+..++
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~ 94 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEECCcccc
Confidence 46999999999999999999999999999999999999997 9999999999875432 46799999999999
Q ss_pred CCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccC
Q 002833 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (875)
Q Consensus 258 ~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (875)
+.+||+||+.|.....+.. +. +...++.++++.+||.+..|..++
T Consensus 95 ~~~tv~eni~~~~~~~~~~----------~~------------------------~~~~~v~e~l~~vgL~~~~~~~~~- 139 (343)
T TIGR02314 95 SSRTVFGNVALPLELDNTP----------KD------------------------EIKRKVTELLALVGLGDKHDSYPS- 139 (343)
T ss_pred ccCcHHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCCchhhhCChh-
Confidence 9999999999876543221 00 012245678999999998887765
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEE
Q 002833 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (875)
Q Consensus 338 ~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL 417 (875)
.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|+++|+ .+.+.++||+|++|
T Consensus 140 ----~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~-~~~v~~~~d~v~vl 214 (343)
T TIGR02314 140 ----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHE-MDVVKRICDCVAVI 214 (343)
T ss_pred ----hCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEEE
Confidence 4999999999999999999999999999999999999999999999988678999998766 45788999999999
Q ss_pred eCCeEEEecChhhH
Q 002833 418 SEGQIVYQGPRDNV 431 (875)
Q Consensus 418 ~~G~iv~~Gp~~~~ 431 (875)
++|++++.|+++++
T Consensus 215 ~~G~iv~~g~~~~v 228 (343)
T TIGR02314 215 SNGELIEQGTVSEI 228 (343)
T ss_pred ECCEEEEEcCHHHH
Confidence 99999999999887
No 28
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=6.2e-41 Score=375.55 Aligned_cols=206 Identities=22% Similarity=0.365 Sum_probs=180.7
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCc--cEEEECCEeCCCCcc-CceEEEEecCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRAS--GKITYCGHELNEFVP-QRTCAYISQHDLHHGEM 260 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~s--G~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~l 260 (875)
+.+|+|+|++|++||+++|+|||||||||||++|+|+++|+ + |+|.++|+++....+ ++.++||+|+..++|++
T Consensus 18 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~ 94 (362)
T TIGR03258 18 NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA---GLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHL 94 (362)
T ss_pred eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCC
Confidence 46999999999999999999999999999999999999986 7 999999999865443 46799999999999999
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccC
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (875)
||+||+.|+.+.++.. +. +....++++++.+||++..|+.+++
T Consensus 95 tv~enl~~~l~~~~~~----------~~------------------------~~~~~v~~~l~~~gL~~~~~~~~~~--- 137 (362)
T TIGR03258 95 KVEDNVAFGLRAQKMP----------KA------------------------DIAERVADALKLVGLGDAAAHLPAQ--- 137 (362)
T ss_pred cHHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHhcCCCchhhCChhh---
Confidence 9999999987543221 00 0122467789999999988887764
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhC-CcEEEEeecCCchhHHhhcCeEEEEeC
Q 002833 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHIL-DVTMIVALLQPAPETYDLFDDIILLSE 419 (875)
Q Consensus 341 rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~-~~tviisi~q~~~ei~~lfD~vilL~~ 419 (875)
|||||||||+|||+|+.+|++|+|||||+|||+.++.++.+.|+++.+.. +.|+|+++|++ .++..++|+|++|++
T Consensus 138 --LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~-~ea~~l~dri~vl~~ 214 (362)
T TIGR03258 138 --LSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQ-DDALTLADKAGIMKD 214 (362)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCH-HHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999998765 78888887654 578999999999999
Q ss_pred CeEEEecChhhHH
Q 002833 420 GQIVYQGPRDNVL 432 (875)
Q Consensus 420 G~iv~~Gp~~~~~ 432 (875)
|+++..|+++++.
T Consensus 215 G~i~~~g~~~~~~ 227 (362)
T TIGR03258 215 GRLAAHGEPQALY 227 (362)
T ss_pred CEEEEEcCHHHHH
Confidence 9999999999883
No 29
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=7.9e-41 Score=376.08 Aligned_cols=219 Identities=26% Similarity=0.367 Sum_probs=188.9
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc-CceEEEEecCCCCCCCCCH
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 262 (875)
+++|+|+|+.+++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++|++|+..+||++||
T Consensus 27 ~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv 103 (375)
T PRK09452 27 KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTV 103 (375)
T ss_pred eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCH
Confidence 46999999999999999999999999999999999999986 9999999999876543 5779999999999999999
Q ss_pred HHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCC
Q 002833 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (875)
Q Consensus 263 ~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (875)
+||+.|+.+.++.. +. +....++++++.+||++..|..+. .
T Consensus 104 ~eNi~~~l~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~p~-----~ 144 (375)
T PRK09452 104 FENVAFGLRMQKTP----------AA------------------------EITPRVMEALRMVQLEEFAQRKPH-----Q 144 (375)
T ss_pred HHHHHHHHhhcCCC----------HH------------------------HHHHHHHHHHHHcCCchhhhCChh-----h
Confidence 99999986543221 00 012245778999999998887775 4
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCeE
Q 002833 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (875)
Q Consensus 343 LSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~i 422 (875)
|||||||||+|||+|+.+|++|+||||++|||..++.++.+.|+++.+..+.|+|+++|++ .++..++|+|++|++|++
T Consensus 145 LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~-~ea~~laDri~vl~~G~i 223 (375)
T PRK09452 145 LSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQ-EEALTMSDRIVVMRDGRI 223 (375)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999887788998887655 588999999999999999
Q ss_pred EEecChhhHHHHHHHcCCCCCCCCCHHHHHH
Q 002833 423 VYQGPRDNVLEFFEHMGFKCPERKGVADFLQ 453 (875)
Q Consensus 423 v~~Gp~~~~~~~F~~~Gf~~p~~~~~adfl~ 453 (875)
+..|+++++ |..|....+|+|+-
T Consensus 224 ~~~g~~~~i--------~~~p~~~~~a~~~g 246 (375)
T PRK09452 224 EQDGTPREI--------YEEPKNLFVARFIG 246 (375)
T ss_pred EEEcCHHHH--------HhCcccHHHHHhcC
Confidence 999999887 34566666677653
No 30
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=1.6e-40 Score=365.51 Aligned_cols=207 Identities=29% Similarity=0.436 Sum_probs=179.9
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc--cCceEEEEecCCCCCCCC
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEM 260 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~l 260 (875)
.+.+|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.+||++|+..+++.+
T Consensus 19 ~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~ 95 (306)
T PRK13537 19 DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDF 95 (306)
T ss_pred CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchHHHHhcEEEEeccCcCCCCC
Confidence 356999999999999999999999999999999999999997 999999999875432 246799999999999999
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccC
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (875)
||+||+.|.++.++... . +....++++++.+||.+.+++.+++
T Consensus 96 tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~--- 138 (306)
T PRK13537 96 TVRENLLVFGRYFGLSA----------A------------------------AARALVPPLLEFAKLENKADAKVGE--- 138 (306)
T ss_pred cHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCchHhcCchhh---
Confidence 99999998765543210 0 0112356789999999988888864
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCC
Q 002833 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (875)
Q Consensus 341 rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G 420 (875)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|++++.|+. +++.++||+|++|++|
T Consensus 139 --LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~till~sH~l-~e~~~~~d~i~il~~G 214 (306)
T PRK13537 139 --LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA-RGKTILLTTHFM-EEAERLCDRLCVIEEG 214 (306)
T ss_pred --CCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999975 488999987665 4888999999999999
Q ss_pred eEEEecChhhHHH
Q 002833 421 QIVYQGPRDNVLE 433 (875)
Q Consensus 421 ~iv~~Gp~~~~~~ 433 (875)
++++.|+++++..
T Consensus 215 ~i~~~g~~~~l~~ 227 (306)
T PRK13537 215 RKIAEGAPHALIE 227 (306)
T ss_pred EEEEECCHHHHHh
Confidence 9999999988754
No 31
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.9e-41 Score=336.67 Aligned_cols=224 Identities=24% Similarity=0.388 Sum_probs=183.5
Q ss_pred cccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC--CCCCCccEEEECCEeCCCCc-----cCceEEEEecCC
Q 002833 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEFV-----PQRTCAYISQHD 254 (875)
Q Consensus 182 ~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~--~~~~~sG~I~~nG~~~~~~~-----~~~~~~yv~Q~d 254 (875)
+++++|+|||+.|+++++||+||||||||||||++|..+.+ |..+++|+|.|+|+++.+.. .++.+|+|+|.+
T Consensus 18 g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkP 97 (253)
T COG1117 18 GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKP 97 (253)
T ss_pred CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCC
Confidence 46789999999999999999999999999999999998765 45678999999999986532 368899999999
Q ss_pred CCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCc-cccc
Q 002833 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI-CADT 333 (875)
Q Consensus 255 ~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~~dt 333 (875)
.-|| +|++||+.|+.+.+|... .+ . ..+++..|+.-+|.+ ..|.
T Consensus 98 nPFp-~SIydNVayG~r~~g~~~-~~-------------------l--------------deiVe~sLk~AaLWdEVKDr 142 (253)
T COG1117 98 NPFP-MSIYDNVAYGLRLHGIKD-KE-------------------L--------------DEIVESSLKKAALWDEVKDR 142 (253)
T ss_pred CCCC-chHHHHHHHhHHhhccch-HH-------------------H--------------HHHHHHHHHHhHhHHHhHHH
Confidence 9999 999999999999887642 11 1 112333344444422 1221
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCe
Q 002833 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (875)
Q Consensus 334 ~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~ 413 (875)
+ ++...+|||||+||++|||+|+.+|+|||||||||+|||.++.+|-+++.++.+ .-|+|+.+|. ...+.+..|+
T Consensus 143 L--~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~--~yTIviVTHn-mqQAaRvSD~ 217 (253)
T COG1117 143 L--HKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK--KYTIVIVTHN-MQQAARVSDY 217 (253)
T ss_pred h--hCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh--ccEEEEEeCC-HHHHHHHhHh
Confidence 1 123456999999999999999999999999999999999999999999999975 6788887654 5578899999
Q ss_pred EEEEeCCeEEEecChhhHHHHHHHcCCCCCCCCCHHHHHH
Q 002833 414 IILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQ 453 (875)
Q Consensus 414 vilL~~G~iv~~Gp~~~~~~~F~~~Gf~~p~~~~~adfl~ 453 (875)
..++..|++|++|+.+++ |..|.++.+.||+.
T Consensus 218 taFf~~G~LvE~g~T~~i--------F~~P~~~~TedYis 249 (253)
T COG1117 218 TAFFYLGELVEFGPTDKI--------FTNPKHKRTEDYIS 249 (253)
T ss_pred hhhhcccEEEEEcCHHhh--------hcCccHHHHHHHhc
Confidence 999999999999999988 67788888888763
No 32
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-40 Score=372.85 Aligned_cols=218 Identities=23% Similarity=0.329 Sum_probs=186.3
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc-CceEEEEecCCCCCCCCCH
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 262 (875)
..+|+|+|+.|++||+++|+|||||||||||++|+|+.+|+ +|+|.++|+++....+ ++.++|++|+..+||++||
T Consensus 32 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv 108 (377)
T PRK11607 32 QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTV 108 (377)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCH
Confidence 46999999999999999999999999999999999999997 9999999999866443 5789999999999999999
Q ss_pred HHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCC
Q 002833 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (875)
Q Consensus 263 ~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (875)
.||+.|+.+.++.. +. +....++++++.+||.+..+..+. .
T Consensus 109 ~eNi~~~l~~~~~~----------~~------------------------~~~~~v~~~l~~l~L~~~~~~~~~-----~ 149 (377)
T PRK11607 109 EQNIAFGLKQDKLP----------KA------------------------EIASRVNEMLGLVHMQEFAKRKPH-----Q 149 (377)
T ss_pred HHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCCchhhcCChh-----h
Confidence 99999986543211 00 012246778999999988877765 5
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCeE
Q 002833 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (875)
Q Consensus 343 LSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~i 422 (875)
|||||||||+|||+|+.+|++|||||||+|||..++.++.+.|+++.+..+.|+|+++|++ .++..++|+|++|++|++
T Consensus 150 LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~laDri~vl~~G~i 228 (377)
T PRK11607 150 LSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQ-EEAMTMAGRIAIMNRGKF 228 (377)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEeCCEE
Confidence 9999999999999999999999999999999999999999999999876788999887665 588999999999999999
Q ss_pred EEecChhhHHHHHHHcCCCCCCCCCHHHHH
Q 002833 423 VYQGPRDNVLEFFEHMGFKCPERKGVADFL 452 (875)
Q Consensus 423 v~~Gp~~~~~~~F~~~Gf~~p~~~~~adfl 452 (875)
+..|+++++. ..|....+|.|+
T Consensus 229 ~~~g~~~~~~--------~~p~~~~~a~~~ 250 (377)
T PRK11607 229 VQIGEPEEIY--------EHPTTRYSAEFI 250 (377)
T ss_pred EEEcCHHHHH--------hCCccHHHHHhc
Confidence 9999999873 335544455554
No 33
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=4.3e-40 Score=368.08 Aligned_cols=208 Identities=22% Similarity=0.326 Sum_probs=181.9
Q ss_pred cccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc-------CceEEEEecCC
Q 002833 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHD 254 (875)
Q Consensus 182 ~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~-------~~~~~yv~Q~d 254 (875)
+.+.+|+|+|++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|+.
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~---~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 3456999999999999999999999999999999999999996 9999999999876543 46799999999
Q ss_pred CCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCcccccc
Q 002833 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTM 334 (875)
Q Consensus 255 ~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 334 (875)
.++|++||+||+.|..+..+... .+ ....+.++++.+||++..++.
T Consensus 81 ~l~~~~TV~eNi~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~vgL~~~~~~~ 126 (363)
T TIGR01186 81 ALFPHMTILQNTSLGPELLGWPE----------QE------------------------RKEKALELLKLVGLEEYEHRY 126 (363)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCH----------HH------------------------HHHHHHHHHHhcCCchhhhCC
Confidence 99999999999999865443210 00 122457789999999888887
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeE
Q 002833 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (875)
Q Consensus 335 vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~v 414 (875)
+++ |||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..++|+|+++|+ ..++.++||+|
T Consensus 127 p~~-----LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd-~~ea~~~~drI 200 (363)
T TIGR01186 127 PDE-----LSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHD-LDEAIRIGDRI 200 (363)
T ss_pred hhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEE
Confidence 765 999999999999999999999999999999999999999999999987668899998765 45788999999
Q ss_pred EEEeCCeEEEecChhhHH
Q 002833 415 ILLSEGQIVYQGPRDNVL 432 (875)
Q Consensus 415 ilL~~G~iv~~Gp~~~~~ 432 (875)
++|++|+++..|+++++.
T Consensus 201 ~vl~~G~iv~~g~~~ei~ 218 (363)
T TIGR01186 201 VIMKAGEIVQVGTPDEIL 218 (363)
T ss_pred EEEeCCEEEeeCCHHHHH
Confidence 999999999999998874
No 34
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=3e-40 Score=369.32 Aligned_cols=222 Identities=27% Similarity=0.432 Sum_probs=185.2
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc-CceEEEEecCCCCCCCCCH
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 262 (875)
+.+|+|+|++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++|++|+..++|++||
T Consensus 15 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv 91 (353)
T PRK10851 15 TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTV 91 (353)
T ss_pred eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcH
Confidence 46999999999999999999999999999999999999987 9999999999865433 4679999999999999999
Q ss_pred HHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCC
Q 002833 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (875)
Q Consensus 263 ~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (875)
+||+.|+.+....... ..+. +....++++++.+||++..|..+. .
T Consensus 92 ~eni~~~~~~~~~~~~------~~~~------------------------~~~~~~~~~l~~~~L~~~~~~~~~-----~ 136 (353)
T PRK10851 92 FDNIAFGLTVLPRRER------PNAA------------------------AIKAKVTQLLEMVQLAHLADRYPA-----Q 136 (353)
T ss_pred HHHHHhhhhhcccccC------CCHH------------------------HHHHHHHHHHHHcCCchhhhCChh-----h
Confidence 9999998653210000 0000 012246778999999988887765 4
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCeE
Q 002833 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (875)
Q Consensus 343 LSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~i 422 (875)
|||||||||+|||+|+.+|++|+|||||+|||+.++.++.+.|+++.+..+.|+|+++|++ .++..++|+|++|++|++
T Consensus 137 LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~-~ea~~~~Dri~vl~~G~i 215 (353)
T PRK10851 137 LSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQ-EEAMEVADRVVVMSQGNI 215 (353)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999876688988877654 588999999999999999
Q ss_pred EEecChhhHHHHHHHcCCCCCCCCCHHHHH
Q 002833 423 VYQGPRDNVLEFFEHMGFKCPERKGVADFL 452 (875)
Q Consensus 423 v~~Gp~~~~~~~F~~~Gf~~p~~~~~adfl 452 (875)
++.|+++++. ..|...-+++|+
T Consensus 216 ~~~g~~~~i~--------~~p~~~~~~~~~ 237 (353)
T PRK10851 216 EQAGTPDQVW--------REPATRFVLEFM 237 (353)
T ss_pred EEEcCHHHHH--------hCccchHHHHhc
Confidence 9999998873 245444455554
No 35
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=2.2e-40 Score=327.11 Aligned_cols=209 Identities=25% Similarity=0.380 Sum_probs=182.1
Q ss_pred cccCCcccccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc------CceEE
Q 002833 175 HLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP------QRTCA 248 (875)
Q Consensus 175 ~~~~~~~~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~------~~~~~ 248 (875)
++.+.|....++|+|||+.|++||++-|+||||||||||||+|.+..+|+ +|+|.+||+++..... +|.||
T Consensus 6 ~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IG 82 (223)
T COG2884 6 NVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIG 82 (223)
T ss_pred hhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheee
Confidence 34456666677999999999999999999999999999999999999997 9999999999865432 58899
Q ss_pred EEecCCCCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCC
Q 002833 249 YISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD 328 (875)
Q Consensus 249 yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~ 328 (875)
+|+||..+++++||.||++|+.+..|...+ +.+.++.++|+..||.
T Consensus 83 vVFQD~rLL~~~tvyeNVA~pL~v~G~~~~----------------------------------~i~~rV~~~L~~VgL~ 128 (223)
T COG2884 83 VVFQDFRLLPDRTVYENVALPLRVIGKPPR----------------------------------EIRRRVSEVLDLVGLK 128 (223)
T ss_pred eEeeeccccccchHhhhhhhhhhccCCCHH----------------------------------HHHHHHHHHHHHhccc
Confidence 999999999999999999999987765311 1234577899999999
Q ss_pred ccccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHH
Q 002833 329 ICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETY 408 (875)
Q Consensus 329 ~~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~ 408 (875)
+.++..+- .|||||+|||+||||++.+|++|+.||||-+||+.++.+|++++.++.+ .|.||++++|. ..-+-
T Consensus 129 ~k~~~lP~-----~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr-~GtTVl~ATHd-~~lv~ 201 (223)
T COG2884 129 HKARALPS-----QLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR-LGTTVLMATHD-LELVN 201 (223)
T ss_pred hhhhcCcc-----ccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh-cCcEEEEEecc-HHHHH
Confidence 99987765 4999999999999999999999999999999999999999999999986 69999998764 44566
Q ss_pred hhcCeEEEEeCCeEEEecC
Q 002833 409 DLFDDIILLSEGQIVYQGP 427 (875)
Q Consensus 409 ~lfD~vilL~~G~iv~~Gp 427 (875)
++--+++.|++|+++....
T Consensus 202 ~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 202 RMRHRVLALEDGRLVRDES 220 (223)
T ss_pred hccCcEEEEeCCEEEeccc
Confidence 6778999999999987654
No 36
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.7e-40 Score=348.46 Aligned_cols=206 Identities=27% Similarity=0.376 Sum_probs=174.5
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc------cCceEEEEecCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLHH 257 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~------~~~~~~yv~Q~d~~~ 257 (875)
+.+|+|+|++|++||+++|+||||||||||||+|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (235)
T cd03261 13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALF 89 (235)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccChhhHHHHhcceEEEccCcccC
Confidence 46999999999999999999999999999999999999986 999999999876432 245699999999999
Q ss_pred CCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccC
Q 002833 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (875)
Q Consensus 258 ~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (875)
+.+||+||+.+........ .+. +....++++++.+||.+..++.+++
T Consensus 90 ~~~tv~~~l~~~~~~~~~~---------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~ 136 (235)
T cd03261 90 DSLTVFENVAFPLREHTRL---------SEE------------------------EIREIVLEKLEAVGLRGAEDLYPAE 136 (235)
T ss_pred CCCcHHHHHHHHHhhccCC---------CHH------------------------HHHHHHHHHHHHcCCchhhcCChhh
Confidence 9999999998864321100 000 0112356688999998877777764
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEE
Q 002833 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (875)
Q Consensus 338 ~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL 417 (875)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++.++||+|++|
T Consensus 137 -----LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l 210 (235)
T cd03261 137 -----LSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVL 210 (235)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEE
Confidence 99999999999999999999999999999999999999999999998655789888877654 778899999999
Q ss_pred eCCeEEEecChhhH
Q 002833 418 SEGQIVYQGPRDNV 431 (875)
Q Consensus 418 ~~G~iv~~Gp~~~~ 431 (875)
++|++++.|+++++
T Consensus 211 ~~G~i~~~g~~~~~ 224 (235)
T cd03261 211 YDGKIVAEGTPEEL 224 (235)
T ss_pred ECCeEEEecCHHHH
Confidence 99999999998765
No 37
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=2.3e-40 Score=324.32 Aligned_cols=201 Identities=25% Similarity=0.403 Sum_probs=179.6
Q ss_pred ceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc-CceEEEEecCCCCCCCCCHHHHHH
Q 002833 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTVRETLD 267 (875)
Q Consensus 189 ~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~EtL~ 267 (875)
.++..|.+||+++|+||||||||||||+|||+..|. +|+|++||++.....| +|.+++++|+.++|.+|||.+|+.
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~---~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNig 93 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIG 93 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC---CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhc
Confidence 578899999999999999999999999999999996 9999999999887665 688999999999999999999998
Q ss_pred HhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCCCHHH
Q 002833 268 FSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQ 347 (875)
Q Consensus 268 f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGe 347 (875)
++.. ++-+ ++. +.+..++.++...||..+.+..++. |||||
T Consensus 94 LGl~---P~Lk------L~a-------------------------~~r~~v~~aa~~vGl~~~~~RLP~~-----LSGGq 134 (231)
T COG3840 94 LGLS---PGLK------LNA-------------------------EQREKVEAAAAQVGLAGFLKRLPGE-----LSGGQ 134 (231)
T ss_pred ccCC---cccc------cCH-------------------------HHHHHHHHHHHHhChhhHhhhCccc-----cCchH
Confidence 8753 2111 111 1233467789999999999988875 99999
Q ss_pred HHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCeEEEecC
Q 002833 348 KKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGP 427 (875)
Q Consensus 348 rkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~iv~~Gp 427 (875)
||||++||+|+.+.+||+||||++.||+.-+.++..++.+++.+.+.|+++.+|||. ++..++|+++++++|+|.++|+
T Consensus 135 RQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~Gri~~~g~ 213 (231)
T COG3840 135 RQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGS 213 (231)
T ss_pred HHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeCCEEEeecc
Confidence 999999999999999999999999999999999999999999999999999999886 7889999999999999999999
Q ss_pred hhhHH
Q 002833 428 RDNVL 432 (875)
Q Consensus 428 ~~~~~ 432 (875)
.++..
T Consensus 214 ~~~~~ 218 (231)
T COG3840 214 TQELL 218 (231)
T ss_pred HHHHh
Confidence 88764
No 38
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-40 Score=369.89 Aligned_cols=206 Identities=26% Similarity=0.383 Sum_probs=179.2
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc-CceEEEEecCCCCCCCCCH
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 262 (875)
+.+|+|+|++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++|++|+..+++++||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv 92 (369)
T PRK11000 16 VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSV 92 (369)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCH
Confidence 46999999999999999999999999999999999999986 9999999999865433 4679999999999999999
Q ss_pred HHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCC
Q 002833 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (875)
Q Consensus 263 ~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (875)
+||+.|+.+.++.. +. +....++++++.+||++..++.++ .
T Consensus 93 ~eni~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~lgL~~~~~~~~~-----~ 133 (369)
T PRK11000 93 AENMSFGLKLAGAK----------KE------------------------EINQRVNQVAEVLQLAHLLDRKPK-----A 133 (369)
T ss_pred HHHHHhHHhhcCCC----------HH------------------------HHHHHHHHHHHHcCChhhhcCChh-----h
Confidence 99999976533211 00 011235778999999988887776 4
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCeE
Q 002833 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (875)
Q Consensus 343 LSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~i 422 (875)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|+++|++ .++.++||+|++|++|++
T Consensus 134 LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~-~~~~~~~d~i~vl~~G~i 212 (369)
T PRK11000 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRV 212 (369)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999876688999887765 478899999999999999
Q ss_pred EEecChhhHH
Q 002833 423 VYQGPRDNVL 432 (875)
Q Consensus 423 v~~Gp~~~~~ 432 (875)
+..|+++++.
T Consensus 213 ~~~g~~~~i~ 222 (369)
T PRK11000 213 AQVGKPLELY 222 (369)
T ss_pred EEEcCHHHHH
Confidence 9999998873
No 39
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=7.2e-40 Score=390.93 Aligned_cols=258 Identities=26% Similarity=0.409 Sum_probs=214.3
Q ss_pred hHhHHHHHHHHHHhhccChHHHHHHHhhhccccCCCCCceEEEEeeeeEEEEeecccccccchhHHHHHHHHHHhhhccc
Q 002833 97 VQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHL 176 (875)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 176 (875)
.++-+...+|+..+.+.++|.-..+. ....+...-+++|+|+++....
T Consensus 436 ~q~~~~~~~rL~dil~~~~E~~~~~~-----~~~~~~~~g~I~~~nvsf~y~~--------------------------- 483 (709)
T COG2274 436 FQQAKVALERLGDILDTPPEQEGDKT-----LIHLPKLQGEIEFENVSFRYGP--------------------------- 483 (709)
T ss_pred HHHHHHHHHHHHHHhcCCcccccccc-----cccccccCceEEEEEEEEEeCC---------------------------
Confidence 46677888888888888887332210 1122223357899998875321
Q ss_pred cCCcccccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecC
Q 002833 177 VPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQH 253 (875)
Q Consensus 177 ~~~~~~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~ 253 (875)
.+..+|+|+|++|+|||.+||+|+||||||||+|+|+|+++|. +|+|.+||.+++...+ ++.++||+|+
T Consensus 484 -----~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~ 555 (709)
T COG2274 484 -----DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLASLRRQVGYVLQD 555 (709)
T ss_pred -----CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHHhcCHHHHHhheeEEccc
Confidence 1235999999999999999999999999999999999999997 9999999999987754 6889999998
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccc
Q 002833 254 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (875)
Q Consensus 254 d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 333 (875)
+.+|.. ||+||+.++ .|+.+.+++++|+..++.+.. +..++..+||
T Consensus 556 ~~Lf~g-SI~eNi~l~-------------------------~p~~~~e~i~~A~~~ag~~~f--------I~~lP~gy~t 601 (709)
T COG2274 556 PFLFSG-SIRENIALG-------------------------NPEATDEEIIEAAQLAGAHEF--------IENLPMGYDT 601 (709)
T ss_pred chhhcC-cHHHHHhcC-------------------------CCCCCHHHHHHHHHHhCcHHH--------HHhccccccc
Confidence 877754 999999886 244555667777776665443 5578899999
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCe
Q 002833 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (875)
Q Consensus 334 ~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~ 413 (875)
.||+ +..+||||||||++|||+|+.+|+||+||||||+||+.+...|.+.|.++.+ ++|+|+..|.+ .+.+.||+
T Consensus 602 ~v~E-~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~--~~T~I~IaHRl--~ti~~adr 676 (709)
T COG2274 602 PVGE-GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ--GRTVIIIAHRL--STIRSADR 676 (709)
T ss_pred cccc-CCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc--CCeEEEEEccc--hHhhhccE
Confidence 9995 6678999999999999999999999999999999999999999999999874 68999988877 48899999
Q ss_pred EEEEeCCeEEEecChhhHHH
Q 002833 414 IILLSEGQIVYQGPRDNVLE 433 (875)
Q Consensus 414 vilL~~G~iv~~Gp~~~~~~ 433 (875)
|+||++|+|+.+|+++++.+
T Consensus 677 IiVl~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 677 IIVLDQGKIVEQGSHEELLA 696 (709)
T ss_pred EEEccCCceeccCCHHHHHH
Confidence 99999999999999999875
No 40
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=8e-40 Score=359.56 Aligned_cols=207 Identities=27% Similarity=0.418 Sum_probs=178.9
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc--cCceEEEEecCCCCCCCC
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEM 260 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~l 260 (875)
++++|+|||+.|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++.... .++.++|++|++.+++.+
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 81 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDL 81 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCC
Confidence 356999999999999999999999999999999999999987 999999999875421 145699999999999999
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccC
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (875)
||+||+.+.++.++... .+ ....++++++.+||.+..++.+++
T Consensus 82 tv~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~--- 124 (302)
T TIGR01188 82 TGRENLEMMGRLYGLPK----------DE------------------------AEERAEELLELFELGEAADRPVGT--- 124 (302)
T ss_pred cHHHHHHHHHHHcCCCH----------HH------------------------HHHHHHHHHHHcCChhHhCCchhh---
Confidence 99999998765443210 00 112356789999999888888764
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCC
Q 002833 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (875)
Q Consensus 341 rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G 420 (875)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ .|.|+|++.|++ .++.++||+|++|++|
T Consensus 125 --LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~tvi~~sH~~-~~~~~~~d~v~~l~~G 200 (302)
T TIGR01188 125 --YSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKE-EGVTILLTTHYM-EEADKLCDRIAIIDHG 200 (302)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999976 488999987665 5888999999999999
Q ss_pred eEEEecChhhHHH
Q 002833 421 QIVYQGPRDNVLE 433 (875)
Q Consensus 421 ~iv~~Gp~~~~~~ 433 (875)
++++.|+++++.+
T Consensus 201 ~i~~~g~~~~l~~ 213 (302)
T TIGR01188 201 RIIAEGTPEELKR 213 (302)
T ss_pred EEEEECCHHHHHH
Confidence 9999999988754
No 41
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.9e-40 Score=346.06 Aligned_cols=207 Identities=26% Similarity=0.367 Sum_probs=180.9
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCC----CCccCceEEEEecCCC-CCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN----EFVPQRTCAYISQHDL-HHG 258 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~----~~~~~~~~~yv~Q~d~-~~~ 258 (875)
..+|+|+|+.|++|+.++|+||||||||||+++|+|+++|. +|+|.++|.+.. ....++.+|||+|++. .+.
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~ 93 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLF 93 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhhHHHhhcceEEEEECcccccc
Confidence 57999999999999999999999999999999999999997 899999999865 2233688999999964 456
Q ss_pred CCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCc
Q 002833 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (875)
Q Consensus 259 ~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~ 338 (875)
.-||.|.++|+....+... . +...+++++|+.+||.+.++..+.+
T Consensus 94 ~~tV~~evafg~~n~g~~~----------~------------------------e~~~rv~~~l~~vgl~~~~~r~p~~- 138 (235)
T COG1122 94 GPTVEDEVAFGLENLGLPR----------E------------------------EIEERVAEALELVGLEELLDRPPFN- 138 (235)
T ss_pred cCcHHHHHhhchhhcCCCH----------H------------------------HHHHHHHHHHHHcCchhhccCCccc-
Confidence 6799999999987765421 0 1234578899999999998887765
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEe
Q 002833 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (875)
Q Consensus 339 ~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~ 418 (875)
|||||||||+||.+|+.+|++|+|||||+|||+..+.++++.++++.+..++|+|++.| ....+.+++|++++|+
T Consensus 139 ----LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tH-d~~~~~~~ad~v~vl~ 213 (235)
T COG1122 139 ----LSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTH-DLELVLEYADRVVVLD 213 (235)
T ss_pred ----cCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeC-cHHHHHhhCCEEEEEE
Confidence 99999999999999999999999999999999999999999999999866788888765 5668899999999999
Q ss_pred CCeEEEecChhhHHH
Q 002833 419 EGQIVYQGPRDNVLE 433 (875)
Q Consensus 419 ~G~iv~~Gp~~~~~~ 433 (875)
+|+++++|+++++.+
T Consensus 214 ~G~i~~~g~p~~i~~ 228 (235)
T COG1122 214 DGKILADGDPAEIFN 228 (235)
T ss_pred CCEEeecCCHHHHhh
Confidence 999999999877643
No 42
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-39 Score=339.70 Aligned_cols=200 Identities=32% Similarity=0.449 Sum_probs=170.0
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc-CceEEEEecCCCCCCCCCH
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 262 (875)
+++|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+||
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 89 (213)
T cd03259 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTV 89 (213)
T ss_pred eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcCcCchhhccEEEEcCchhhccCCcH
Confidence 56999999999999999999999999999999999999986 9999999998764322 4579999999989999999
Q ss_pred HHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCC
Q 002833 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (875)
Q Consensus 263 ~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (875)
+||+.++....+.. .. .....++.+++.+||.+..++.+++
T Consensus 90 ~~~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~----- 130 (213)
T cd03259 90 AENIAFGLKLRGVP----------KA------------------------EIRARVRELLELVGLEGLLNRYPHE----- 130 (213)
T ss_pred HHHHHhHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCChhhhhcChhh-----
Confidence 99998864322110 00 0012346688999998888877764
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCeE
Q 002833 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (875)
Q Consensus 343 LSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~i 422 (875)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.++||+|++|++|++
T Consensus 131 LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i 209 (213)
T cd03259 131 LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQ-EEALALADRIAVMNEGRI 209 (213)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999865588988887765 467889999999999999
Q ss_pred EEec
Q 002833 423 VYQG 426 (875)
Q Consensus 423 v~~G 426 (875)
++.|
T Consensus 210 ~~~g 213 (213)
T cd03259 210 VQVG 213 (213)
T ss_pred EecC
Confidence 8765
No 43
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-39 Score=362.70 Aligned_cols=206 Identities=26% Similarity=0.361 Sum_probs=178.0
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc------CceEEEEecCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP------QRTCAYISQHDLHH 257 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~------~~~~~yv~Q~d~~~ 257 (875)
+++|+|+|++|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++..... ++.++|++|+..++
T Consensus 18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~ 94 (343)
T PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccC
Confidence 56999999999999999999999999999999999999986 9999999999865422 35799999999999
Q ss_pred CCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccC
Q 002833 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (875)
Q Consensus 258 ~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (875)
+.+||+||+.+.....+.. +.+ ....++++++.+||.+..++.++
T Consensus 95 ~~~tv~eni~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~gL~~~~~~~~~- 139 (343)
T PRK11153 95 SSRTVFDNVALPLELAGTP----------KAE------------------------IKARVTELLELVGLSDKADRYPA- 139 (343)
T ss_pred CCCcHHHHHHHHHHHcCCC----------HHH------------------------HHHHHHHHHHHcCCchhhhCChh-
Confidence 9999999999875443211 000 11235678999999988887765
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEE
Q 002833 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (875)
Q Consensus 338 ~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL 417 (875)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++..+.|+|++.|+. .++.++||+|++|
T Consensus 140 ----~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~-~~i~~~~d~v~~l 214 (343)
T PRK11153 140 ----QLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEM-DVVKRICDRVAVI 214 (343)
T ss_pred ----hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 49999999999999999999999999999999999999999999999876688999987765 4788899999999
Q ss_pred eCCeEEEecChhhHH
Q 002833 418 SEGQIVYQGPRDNVL 432 (875)
Q Consensus 418 ~~G~iv~~Gp~~~~~ 432 (875)
++|++++.|+++++.
T Consensus 215 ~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 215 DAGRLVEQGTVSEVF 229 (343)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999988773
No 44
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-39 Score=332.25 Aligned_cols=208 Identities=25% Similarity=0.362 Sum_probs=178.1
Q ss_pred ccccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc----CceEEEEecCCCC
Q 002833 181 KRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLH 256 (875)
Q Consensus 181 ~~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~~~yv~Q~d~~ 256 (875)
.+..+||++||+++++||+++|+||||+|||||||+|+|..++. +|+|.++|++++...+ +.-++||||....
T Consensus 13 YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~---~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~i 89 (237)
T COG0410 13 YGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPPHERARLGIAYVPEGRRI 89 (237)
T ss_pred ccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEECCeecCCCCHHHHHhCCeEeCcccccc
Confidence 34578999999999999999999999999999999999999986 9999999999988765 3568999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHh-CCCccccccc
Q 002833 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL-GLDICADTMV 335 (875)
Q Consensus 257 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l-gL~~~~dt~v 335 (875)
||.|||+|||..++..+... +. .....+.+.+.| .|....+..-
T Consensus 90 F~~LTVeENL~~g~~~~~~~-----------~~------------------------~~~~~e~v~~lFP~Lker~~~~a 134 (237)
T COG0410 90 FPRLTVEENLLLGAYARRDK-----------EA------------------------QERDLEEVYELFPRLKERRNQRA 134 (237)
T ss_pred hhhCcHHHHHhhhhhccccc-----------cc------------------------ccccHHHHHHHChhHHHHhcCcc
Confidence 99999999999876432110 00 000134555665 3666667777
Q ss_pred cCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEE
Q 002833 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (875)
Q Consensus 336 g~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vi 415 (875)
|+ |||||||.++|||||+.+|++|+|||||.||-|.-..+|.+.++++.+..+.||++ ..|....+.+++|+.+
T Consensus 135 G~-----LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlL-VEQn~~~Al~iaDr~y 208 (237)
T COG0410 135 GT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILL-VEQNARFALEIADRGY 208 (237)
T ss_pred cC-----CChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEE-EeccHHHHHHhhCEEE
Confidence 75 99999999999999999999999999999999999999999999999766766666 4899999999999999
Q ss_pred EEeCCeEEEecChhhHH
Q 002833 416 LLSEGQIVYQGPRDNVL 432 (875)
Q Consensus 416 lL~~G~iv~~Gp~~~~~ 432 (875)
||.+|+|++.|+.+++.
T Consensus 209 vle~Griv~~G~~~eL~ 225 (237)
T COG0410 209 VLENGRIVLSGTAAELL 225 (237)
T ss_pred EEeCCEEEEecCHHHHh
Confidence 99999999999998875
No 45
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=2.1e-39 Score=360.78 Aligned_cols=207 Identities=30% Similarity=0.417 Sum_probs=179.2
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc--cCceEEEEecCCCCCCCC
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEM 260 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~l 260 (875)
++.+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++|++|+..+++.+
T Consensus 53 ~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~ 129 (340)
T PRK13536 53 DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARARLARARIGVVPQFDNLDLEF 129 (340)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcchHHHhccEEEEeCCccCCCCC
Confidence 356999999999999999999999999999999999999997 999999999875432 246799999999999999
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccC
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (875)
||.|++.|....++... . +....++++++.+||.+..++.+++
T Consensus 130 tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~ll~~~~L~~~~~~~~~~--- 172 (340)
T PRK13536 130 TVRENLLVFGRYFGMST----------R------------------------EIEAVIPSLLEFARLESKADARVSD--- 172 (340)
T ss_pred cHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCchhhCCChhh---
Confidence 99999997654432110 0 0112345688999999988888875
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCC
Q 002833 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (875)
Q Consensus 341 rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G 420 (875)
|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|+++++ .|.|+|+++|+. .++.++||+|++|++|
T Consensus 173 --LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~g~tilisSH~l-~e~~~~~d~i~il~~G 248 (340)
T PRK13536 173 --LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFM-EEAERLCDRLCVLEAG 248 (340)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999976 588999987654 5888999999999999
Q ss_pred eEEEecChhhHHH
Q 002833 421 QIVYQGPRDNVLE 433 (875)
Q Consensus 421 ~iv~~Gp~~~~~~ 433 (875)
+++++|+++++.+
T Consensus 249 ~i~~~g~~~~l~~ 261 (340)
T PRK13536 249 RKIAEGRPHALID 261 (340)
T ss_pred EEEEEcCHHHHHh
Confidence 9999999998754
No 46
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.2e-40 Score=338.02 Aligned_cols=222 Identities=25% Similarity=0.354 Sum_probs=187.7
Q ss_pred cccccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccC----ceEEEEecCCC
Q 002833 180 KKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ----RTCAYISQHDL 255 (875)
Q Consensus 180 ~~~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~----~~~~yv~Q~d~ 255 (875)
+.+...+++|||+++++||+++|+||||||||||+|+|+|.++|+ +|+|.++|++++...++ .-++..+|...
T Consensus 13 ~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~r 89 (250)
T COG0411 13 RFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHRIARLGIARTFQITR 89 (250)
T ss_pred ecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCCHHHHHhccceeeccccc
Confidence 345678999999999999999999999999999999999999997 99999999999887663 45788999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccc
Q 002833 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335 (875)
Q Consensus 256 ~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v 335 (875)
+|++|||.||+..++..+... . ..+..... ..+. .+....+..+|+.+||.+.+|++.
T Consensus 90 lF~~lTVlENv~va~~~~~~~-~----~~l~~~~~------~~~e-----------~~~~e~A~~~Le~vgL~~~a~~~A 147 (250)
T COG0411 90 LFPGLTVLENVAVGAHARLGL-S----GLLGRPRA------RKEE-----------REARERARELLEFVGLGELADRPA 147 (250)
T ss_pred ccCCCcHHHHHHHHhhhhhhh-h----hhhccccc------hhhH-----------HHHHHHHHHHHHHcCCchhhcchh
Confidence 999999999999987654210 0 00000000 0000 112334678999999999999999
Q ss_pred cCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEE
Q 002833 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (875)
Q Consensus 336 g~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vi 415 (875)
|+ ||+|||||+.||+||+++|++|+||||.+||.+..+.++.+.|+++.+..+.|++++ -|...-++++||||+
T Consensus 148 ~~-----LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillI-EHdM~~Vm~l~dri~ 221 (250)
T COG0411 148 GN-----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLI-EHDMKLVMGLADRIV 221 (250)
T ss_pred hc-----CChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEE-EeccHHHhhhccEEE
Confidence 87 999999999999999999999999999999999999999999999998666777775 677889999999999
Q ss_pred EEeCCeEEEecChhhHH
Q 002833 416 LLSEGQIVYQGPRDNVL 432 (875)
Q Consensus 416 lL~~G~iv~~Gp~~~~~ 432 (875)
||+.|+++.+|+++++.
T Consensus 222 Vl~~G~~IAeG~P~eV~ 238 (250)
T COG0411 222 VLNYGEVIAEGTPEEVR 238 (250)
T ss_pred eccCCcCcccCCHHHHh
Confidence 99999999999999985
No 47
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-39 Score=339.48 Aligned_cols=205 Identities=28% Similarity=0.411 Sum_probs=174.1
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc--cCceEEEEecCCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEMT 261 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lT 261 (875)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|+..+++.+|
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (220)
T cd03265 13 FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELT 89 (220)
T ss_pred EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecCcChHHHhhcEEEecCCccccccCc
Confidence 46999999999999999999999999999999999999886 999999998865321 1356999999999999999
Q ss_pred HHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCC
Q 002833 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (875)
Q Consensus 262 V~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (875)
|+||+.+..+..+... . +....++.+++.+||++..++.+++
T Consensus 90 v~~~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~---- 131 (220)
T cd03265 90 GWENLYIHARLYGVPG----------A------------------------ERRERIDELLDFVGLLEAADRLVKT---- 131 (220)
T ss_pred HHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCHHHhhCChhh----
Confidence 9999998654322100 0 0112356789999999888877764
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCe
Q 002833 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (875)
Q Consensus 342 gLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~ 421 (875)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++ +++.+++|++++|.+|+
T Consensus 132 -LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~-~~~~~~~d~i~~l~~G~ 209 (220)
T cd03265 132 -YSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYM-EEAEQLCDRVAIIDHGR 209 (220)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCE
Confidence 9999999999999999999999999999999999999999999999875578888877665 47888999999999999
Q ss_pred EEEecChhhH
Q 002833 422 IVYQGPRDNV 431 (875)
Q Consensus 422 iv~~Gp~~~~ 431 (875)
++..|+++++
T Consensus 210 i~~~~~~~~~ 219 (220)
T cd03265 210 IIAEGTPEEL 219 (220)
T ss_pred EEEeCChHHc
Confidence 9999987653
No 48
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-39 Score=351.59 Aligned_cols=218 Identities=26% Similarity=0.385 Sum_probs=179.4
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc-----cCceEEEEecCCC-CC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-----PQRTCAYISQHDL-HH 257 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~-----~~~~~~yv~Q~d~-~~ 257 (875)
+.+|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++.... .++.++|++|++. .+
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 96 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQL 96 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCcCccHHHHhhceEEEecCchhcc
Confidence 46999999999999999999999999999999999999986 999999999986532 2467999999863 34
Q ss_pred CCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCC--ccccccc
Q 002833 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD--ICADTMV 335 (875)
Q Consensus 258 ~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~--~~~dt~v 335 (875)
..+||+||+.|.....+.. +. +....++++++.+||. +..|+.+
T Consensus 97 ~~~tv~e~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gL~~~~~~~~~~ 142 (287)
T PRK13637 97 FEETIEKDIAFGPINLGLS----------EE------------------------EIENRVKRAMNIVGLDYEDYKDKSP 142 (287)
T ss_pred ccccHHHHHHhHHHHCCCC----------HH------------------------HHHHHHHHHHHHcCCCchhhccCCc
Confidence 4679999999864332210 00 0122357789999997 5666665
Q ss_pred cCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEE
Q 002833 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (875)
Q Consensus 336 g~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vi 415 (875)
. .|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|+++++..+.|+|+++|+. .++.++||+|+
T Consensus 143 ~-----~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~drv~ 216 (287)
T PRK13637 143 F-----ELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSM-EDVAKLADRII 216 (287)
T ss_pred c-----cCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEE
Confidence 5 59999999999999999999999999999999999999999999999875588999987764 47788999999
Q ss_pred EEeCCeEEEecChhhHHH---HHHHcCCCCCC
Q 002833 416 LLSEGQIVYQGPRDNVLE---FFEHMGFKCPE 444 (875)
Q Consensus 416 lL~~G~iv~~Gp~~~~~~---~F~~~Gf~~p~ 444 (875)
+|++|+++++|+++++.+ .+...|+.+|.
T Consensus 217 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 248 (287)
T PRK13637 217 VMNKGKCELQGTPREVFKEVETLESIGLAVPQ 248 (287)
T ss_pred EEECCEEEEECCHHHHHhCHHHHHHcCCCCCh
Confidence 999999999999988743 34455666554
No 49
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-39 Score=334.55 Aligned_cols=204 Identities=26% Similarity=0.310 Sum_probs=176.3
Q ss_pred ccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc----cCceEEEEecCC--CCCC
Q 002833 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV----PQRTCAYISQHD--LHHG 258 (875)
Q Consensus 185 ~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~----~~~~~~yv~Q~d--~~~~ 258 (875)
++|+|||++|.+||.++|+|+||||||||.++|+|+.+|+ +|+|.++|.+..... ..+.+.+|+||+ .+.|
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~---~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP 97 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNP 97 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCcccCccccchhhccceeEEecCCccccCc
Confidence 6999999999999999999999999999999999999997 999999998776532 357899999997 5789
Q ss_pred CCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCcc-ccccccC
Q 002833 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDIC-ADTMVGD 337 (875)
Q Consensus 259 ~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~-~dt~vg~ 337 (875)
..||++.|.-+.+..+... . ...+.++|+.+||... ++
T Consensus 98 ~~tv~~~l~Epl~~~~~~~----------~--------------------------~~~i~~~L~~VgL~~~~l~----- 136 (252)
T COG1124 98 RRTVGRILSEPLRPHGLSK----------S--------------------------QQRIAELLDQVGLPPSFLD----- 136 (252)
T ss_pred chhHHHHHhhhhccCCccH----------H--------------------------HHHHHHHHHHcCCCHHHHh-----
Confidence 9999999987766533211 1 1125678999999753 33
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEE
Q 002833 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (875)
Q Consensus 338 ~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL 417 (875)
+++..|||||||||+|||||+.+|++|++|||||+||++...+|+++|.++.+..+.|.++..| ...-+..+||||+||
T Consensus 137 R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsH-dl~~v~~~cdRi~Vm 215 (252)
T COG1124 137 RRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISH-DLALVEHMCDRIAVM 215 (252)
T ss_pred cCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeC-cHHHHHHHhhheeee
Confidence 3445699999999999999999999999999999999999999999999999988889888765 566888999999999
Q ss_pred eCCeEEEecChhhHHH
Q 002833 418 SEGQIVYQGPRDNVLE 433 (875)
Q Consensus 418 ~~G~iv~~Gp~~~~~~ 433 (875)
++|++++.+|.+++..
T Consensus 216 ~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 216 DNGQIVEIGPTEELLS 231 (252)
T ss_pred eCCeEEEeechhhhhc
Confidence 9999999999998854
No 50
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.6e-39 Score=341.13 Aligned_cols=204 Identities=28% Similarity=0.368 Sum_probs=174.6
Q ss_pred ccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc------CceEEEEecCCCCCC
Q 002833 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP------QRTCAYISQHDLHHG 258 (875)
Q Consensus 185 ~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~------~~~~~yv~Q~d~~~~ 258 (875)
++|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLS 95 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEccCcccCC
Confidence 6999999999999999999999999999999999999986 9999999998764321 356999999999999
Q ss_pred CCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCc
Q 002833 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (875)
Q Consensus 259 ~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~ 338 (875)
.+||+||+.+.....+.. .. .....++.+++.+||.+..+..+.
T Consensus 96 ~~t~~e~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-- 139 (233)
T cd03258 96 SRTVFENVALPLEIAGVP----------KA------------------------EIEERVLELLELVGLEDKADAYPA-- 139 (233)
T ss_pred CCcHHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHCCChhhhhcChh--
Confidence 999999998865432210 00 001235678899999888777765
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEe
Q 002833 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (875)
Q Consensus 339 ~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~ 418 (875)
.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.+++|++++|+
T Consensus 140 ---~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~ 215 (233)
T cd03258 140 ---QLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEM-EVVKRICDRVAVME 215 (233)
T ss_pred ---hCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEE
Confidence 49999999999999999999999999999999999999999999999875588999988765 47788999999999
Q ss_pred CCeEEEecChhhH
Q 002833 419 EGQIVYQGPRDNV 431 (875)
Q Consensus 419 ~G~iv~~Gp~~~~ 431 (875)
+|++++.|+.+++
T Consensus 216 ~G~i~~~~~~~~~ 228 (233)
T cd03258 216 KGEVVEEGTVEEV 228 (233)
T ss_pred CCEEEEecCHHHH
Confidence 9999999988765
No 51
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.8e-39 Score=341.64 Aligned_cols=209 Identities=30% Similarity=0.442 Sum_probs=175.2
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc-CceEEEEecCCCCCCCCCH
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 262 (875)
+.+|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||
T Consensus 15 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 91 (239)
T cd03296 15 FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTV 91 (239)
T ss_pred EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCccccceEEEecCCcccCCCCH
Confidence 46999999999999999999999999999999999999886 9999999998764332 3579999999999999999
Q ss_pred HHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCC
Q 002833 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (875)
Q Consensus 263 ~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (875)
+||+.++....+...+ .+. + +....++.+++.+||.+..++.+++
T Consensus 92 ~e~l~~~~~~~~~~~~-----------------~~~--~-----------~~~~~~~~~l~~~~l~~~~~~~~~~----- 136 (239)
T cd03296 92 FDNVAFGLRVKPRSER-----------------PPE--A-----------EIRAKVHELLKLVQLDWLADRYPAQ----- 136 (239)
T ss_pred HHHHhhhhhhcccccc-----------------CCH--H-----------HHHHHHHHHHHHcCChhhhhcChhh-----
Confidence 9999886543211000 000 0 0012356688999998877777664
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCeE
Q 002833 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (875)
Q Consensus 343 LSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~i 422 (875)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..++|+|++.|++ .++.++||++++|++|++
T Consensus 137 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i 215 (239)
T cd03296 137 LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQ-EEALEVADRVVVMNKGRI 215 (239)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCeE
Confidence 9999999999999999999999999999999999999999999999875578999988776 467889999999999999
Q ss_pred EEecChhhH
Q 002833 423 VYQGPRDNV 431 (875)
Q Consensus 423 v~~Gp~~~~ 431 (875)
++.|+++++
T Consensus 216 ~~~~~~~~~ 224 (239)
T cd03296 216 EQVGTPDEV 224 (239)
T ss_pred EEecCHHHH
Confidence 999998765
No 52
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.6e-40 Score=328.72 Aligned_cols=215 Identities=23% Similarity=0.372 Sum_probs=185.9
Q ss_pred cccCCcccccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc----CceEEEE
Q 002833 175 HLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYI 250 (875)
Q Consensus 175 ~~~~~~~~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~~~yv 250 (875)
++.+++ +++++++|||+.+++||+++|+|||||||||.+.++.|+.+|+ +|+|.++|.+++.... +.-+||+
T Consensus 9 ~l~K~y-~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm~~RArlGigYL 84 (243)
T COG1137 9 NLAKSY-KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMHKRARLGIGYL 84 (243)
T ss_pred hhhHhh-CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCChHHHhhcCcccc
Confidence 343444 4578999999999999999999999999999999999999998 9999999999987654 2358999
Q ss_pred ecCCCCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCcc
Q 002833 251 SQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDIC 330 (875)
Q Consensus 251 ~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~ 330 (875)
+|+...|-.|||+||+......+.... .+ .+.+...+.+|+.|+|.|+
T Consensus 85 pQE~SIFr~LtV~dNi~~vlE~~~~d~--------~~------------------------~~~~~~l~~LL~ef~i~hl 132 (243)
T COG1137 85 PQEASIFRKLTVEDNIMAVLEIREKDL--------KK------------------------AERKEELDALLEEFHITHL 132 (243)
T ss_pred cccchHhhcCcHHHHHHHHHhhhhcch--------hH------------------------HHHHHHHHHHHHHhchHHH
Confidence 999999999999999988765442110 00 0123346789999999999
Q ss_pred ccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhh
Q 002833 331 ADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL 410 (875)
Q Consensus 331 ~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~l 410 (875)
++.+-.. ||||||+|+.|||||+.+|+.++||||++|.||-+..+|.+.++.+.+ .|..++|+.|. ..|+.++
T Consensus 133 r~~~a~s-----LSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~-rgiGvLITDHN-VREtL~i 205 (243)
T COG1137 133 RDSKAYS-----LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD-RGIGVLITDHN-VRETLDI 205 (243)
T ss_pred hcCcccc-----cccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHh-CCceEEEcccc-HHHHHhh
Confidence 9987654 999999999999999999999999999999999999999999999987 59999998755 5699999
Q ss_pred cCeEEEEeCCeEEEecChhhHH
Q 002833 411 FDDIILLSEGQIVYQGPRDNVL 432 (875)
Q Consensus 411 fD~vilL~~G~iv~~Gp~~~~~ 432 (875)
|||.+++++|+++.+|.++++.
T Consensus 206 ~dRaYIi~~G~vla~G~p~ei~ 227 (243)
T COG1137 206 CDRAYIISDGKVLAEGSPEEIV 227 (243)
T ss_pred hheEEEEecCeEEecCCHHHHh
Confidence 9999999999999999999875
No 53
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=4.5e-39 Score=335.70 Aligned_cols=200 Identities=29% Similarity=0.398 Sum_probs=171.1
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc-CceEEEEecCCCCCCCCCH
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 262 (875)
+++|+|+|+.|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||
T Consensus 13 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (213)
T cd03301 13 VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTV 89 (213)
T ss_pred eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCcccceEEEEecChhhccCCCH
Confidence 46999999999999999999999999999999999999886 9999999998764332 3579999999988999999
Q ss_pred HHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCC
Q 002833 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (875)
Q Consensus 263 ~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (875)
+||+.+..+..+.. .. +....++++++.+||.+..+..+++
T Consensus 90 ~~~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~----- 130 (213)
T cd03301 90 YDNIAFGLKLRKVP----------KD------------------------EIDERVREVAELLQIEHLLDRKPKQ----- 130 (213)
T ss_pred HHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCCHHHHhCChhh-----
Confidence 99998865432210 00 0112356788999999888877764
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCeE
Q 002833 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (875)
Q Consensus 343 LSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~i 422 (875)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.++||++++|++|++
T Consensus 131 LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~g~~ 209 (213)
T cd03301 131 LSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQ-VEAMTMADRIAVMNDGQI 209 (213)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999875588999988765 477889999999999999
Q ss_pred EEec
Q 002833 423 VYQG 426 (875)
Q Consensus 423 v~~G 426 (875)
++.|
T Consensus 210 ~~~g 213 (213)
T cd03301 210 QQIG 213 (213)
T ss_pred EecC
Confidence 9876
No 54
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=4.8e-39 Score=340.71 Aligned_cols=214 Identities=25% Similarity=0.385 Sum_probs=175.1
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc----CceEEEEecCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (875)
+.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 89 (236)
T cd03219 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPE 89 (236)
T ss_pred EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEECCCCCHHHHHhcCEEEEecccccccC
Confidence 46999999999999999999999999999999999999886 9999999998765432 3459999999999999
Q ss_pred CCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCcc
Q 002833 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (875)
Q Consensus 260 lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (875)
+||+||+.+.....+... ..+. . ..... .+....++++++.+||++..++.++
T Consensus 90 ~tv~~~l~~~~~~~~~~~-------~~~~-~---~~~~~-------------~~~~~~~~~~l~~~~l~~~~~~~~~--- 142 (236)
T cd03219 90 LTVLENVMVAAQARTGSG-------LLLA-R---ARREE-------------REARERAEELLERVGLADLADRPAG--- 142 (236)
T ss_pred CCHHHHHHHHHhhccccc-------cccc-c---ccccH-------------HHHHHHHHHHHHHcCccchhhCChh---
Confidence 999999988754321100 0000 0 00000 0012235678899999887777765
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeC
Q 002833 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (875)
Q Consensus 340 ~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~ 419 (875)
.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ .++|+|++.|++. ++.++||++++|++
T Consensus 143 --~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~~-~~~~~~d~i~~l~~ 218 (236)
T cd03219 143 --ELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RGITVLLVEHDMD-VVMSLADRVTVLDQ 218 (236)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHH-HHHHhCCEEEEEeC
Confidence 4999999999999999999999999999999999999999999999986 5889988877654 77889999999999
Q ss_pred CeEEEecChhhH
Q 002833 420 GQIVYQGPRDNV 431 (875)
Q Consensus 420 G~iv~~Gp~~~~ 431 (875)
|++++.|+++++
T Consensus 219 G~i~~~~~~~~~ 230 (236)
T cd03219 219 GRVIAEGTPDEV 230 (236)
T ss_pred CEEEeecCHHHh
Confidence 999999998775
No 55
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.7e-39 Score=336.84 Aligned_cols=201 Identities=27% Similarity=0.349 Sum_probs=171.7
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHH
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (875)
+.+|+|+|+.|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.. .++.++|++|++.+++.+||+
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~ 91 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVL 91 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcc--ccCcEEEEecccccccCCCHH
Confidence 46999999999999999999999999999999999999886 9999999998764 246799999999889999999
Q ss_pred HHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCC
Q 002833 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (875)
Q Consensus 264 EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (875)
||+.+.....+... . .....++.+++.+||.+..+..++ .|
T Consensus 92 e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~L 132 (220)
T cd03293 92 DNVALGLELQGVPK----------A------------------------EARERAEELLELVGLSGFENAYPH-----QL 132 (220)
T ss_pred HHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCChhhhhCCcc-----cC
Confidence 99988654322100 0 001235678899999887777765 49
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEe--CCe
Q 002833 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS--EGQ 421 (875)
Q Consensus 344 SGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~--~G~ 421 (875)
||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+..+.|+|++.|++. ++.++||++++|+ +|+
T Consensus 133 SgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~ 211 (220)
T cd03293 133 SGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGR 211 (220)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCE
Confidence 9999999999999999999999999999999999999999999987655789998877764 6788999999999 799
Q ss_pred EEEecChh
Q 002833 422 IVYQGPRD 429 (875)
Q Consensus 422 iv~~Gp~~ 429 (875)
++..++.+
T Consensus 212 i~~~~~~~ 219 (220)
T cd03293 212 IVAEVEVD 219 (220)
T ss_pred EEEEEEec
Confidence 99888753
No 56
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.7e-39 Score=341.06 Aligned_cols=213 Identities=29% Similarity=0.388 Sum_probs=174.1
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc------cCceEEEEecCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLHH 257 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~------~~~~~~yv~Q~d~~~ 257 (875)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 90 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLI 90 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEeccccCHhHHHHHHhccEEEcccCccc
Confidence 56999999999999999999999999999999999999886 999999999876532 135699999999999
Q ss_pred CCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccC
Q 002833 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (875)
Q Consensus 258 ~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (875)
+.+||+||+.++...... . ...+ .+..+ ......++.+++.+||.+..++.++
T Consensus 91 ~~~tv~~~l~~~~~~~~~-~----~~~~------~~~~~---------------~~~~~~~~~~l~~~~l~~~~~~~~~- 143 (241)
T cd03256 91 ERLSVLENVLSGRLGRRS-T----WRSL------FGLFP---------------KEEKQRALAALERVGLLDKAYQRAD- 143 (241)
T ss_pred ccCcHHHHHHhhhcccch-h----hhhh------cccCc---------------HHHHHHHHHHHHHcCChhhhCCCcc-
Confidence 999999999876421100 0 0000 00000 0011235668899999877776665
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEE
Q 002833 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (875)
Q Consensus 338 ~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL 417 (875)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++.++||++++|
T Consensus 144 ----~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l 218 (241)
T cd03256 144 ----QLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGL 218 (241)
T ss_pred ----cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 599999999999999999999999999999999999999999999998655889888877654 678899999999
Q ss_pred eCCeEEEecChhhH
Q 002833 418 SEGQIVYQGPRDNV 431 (875)
Q Consensus 418 ~~G~iv~~Gp~~~~ 431 (875)
++|++++.|+++++
T Consensus 219 ~~G~i~~~~~~~~~ 232 (241)
T cd03256 219 KDGRIVFDGPPAEL 232 (241)
T ss_pred ECCEEEeecCHHHh
Confidence 99999999998875
No 57
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=5e-39 Score=353.44 Aligned_cols=206 Identities=30% Similarity=0.417 Sum_probs=176.1
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc--cCceEEEEecCCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEMT 261 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lT 261 (875)
+.+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++|++|++.+++.+|
T Consensus 17 ~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 93 (303)
T TIGR01288 17 KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFT 93 (303)
T ss_pred eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcccHHHHhhcEEEEeccccCCcCCc
Confidence 46999999999999999999999999999999999999986 999999999875321 2467999999999999999
Q ss_pred HHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCC
Q 002833 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (875)
Q Consensus 262 V~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (875)
|+||+.+.....+.. ..+ ....++.+++.+||.+..++.+++
T Consensus 94 v~e~l~~~~~~~~~~----------~~~------------------------~~~~~~~ll~~~~l~~~~~~~~~~---- 135 (303)
T TIGR01288 94 VRENLLVFGRYFGMS----------TRE------------------------IEAVIPSLLEFARLESKADVRVAL---- 135 (303)
T ss_pred HHHHHHHHHHHcCCC----------HHH------------------------HHHHHHHHHHHCCChhHhcCchhh----
Confidence 999998754332210 000 011245688999999888888764
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCe
Q 002833 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (875)
Q Consensus 342 gLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~ 421 (875)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|.|+|++.|++. ++.++||++++|++|+
T Consensus 136 -LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~til~~sH~~~-~~~~~~d~i~~l~~G~ 212 (303)
T TIGR01288 136 -LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFME-EAERLCDRLCVLESGR 212 (303)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHH-HHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999976 4889999877654 7888999999999999
Q ss_pred EEEecChhhHHH
Q 002833 422 IVYQGPRDNVLE 433 (875)
Q Consensus 422 iv~~Gp~~~~~~ 433 (875)
+++.|+++++..
T Consensus 213 i~~~g~~~~~~~ 224 (303)
T TIGR01288 213 KIAEGRPHALID 224 (303)
T ss_pred EEEEcCHHHHHh
Confidence 999999988753
No 58
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.1e-39 Score=350.58 Aligned_cols=219 Identities=22% Similarity=0.335 Sum_probs=178.8
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCC-------ccCceEEEEecCCC-
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-------VPQRTCAYISQHDL- 255 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~-------~~~~~~~yv~Q~d~- 255 (875)
+++|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++|++|++.
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEH 96 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhhEEEEeeCchh
Confidence 45999999999999999999999999999999999999986 99999999987531 11357999999852
Q ss_pred CCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCC-cccccc
Q 002833 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTM 334 (875)
Q Consensus 256 ~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~ 334 (875)
.+...||+||+.|+....+.. .. +....++++++.+||. +..++.
T Consensus 97 ~l~~~tv~eni~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gL~~~~~~~~ 142 (290)
T PRK13634 97 QLFEETVEKDICFGPMNFGVS----------EE------------------------DAKQKAREMIELVGLPEELLARS 142 (290)
T ss_pred hhhhhhHHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHCCCChhhhhCC
Confidence 344579999999875432211 00 0112357789999997 566766
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeE
Q 002833 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (875)
Q Consensus 335 vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~v 414 (875)
+. .|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|+++++..|.|+|++.|+. +++.++||+|
T Consensus 143 ~~-----~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~-~~~~~~~drv 216 (290)
T PRK13634 143 PF-----ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSM-EDAARYADQI 216 (290)
T ss_pred cc-----cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEE
Confidence 65 49999999999999999999999999999999999999999999999876688999987665 4788999999
Q ss_pred EEEeCCeEEEecChhhHH---HHHHHcCCCCCCC
Q 002833 415 ILLSEGQIVYQGPRDNVL---EFFEHMGFKCPER 445 (875)
Q Consensus 415 ilL~~G~iv~~Gp~~~~~---~~F~~~Gf~~p~~ 445 (875)
++|++|++++.|+++++. ..+...|..+|..
T Consensus 217 ~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~ 250 (290)
T PRK13634 217 VVMHKGTVFLQGTPREIFADPDELEAIGLDLPET 250 (290)
T ss_pred EEEECCEEEEECCHHHHhcCHHHHHHCCCCCCHH
Confidence 999999999999988764 3444556655543
No 59
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=7.1e-39 Score=338.54 Aligned_cols=205 Identities=24% Similarity=0.377 Sum_probs=174.2
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc----CceEEEEecCCCCCC
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHG 258 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~ 258 (875)
.+.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 88 (232)
T cd03218 12 KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMHKRARLGIGYLPQEASIFR 88 (232)
T ss_pred CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccCCHhHHHhccEEEecCCccccc
Confidence 346999999999999999999999999999999999999986 9999999998754322 246999999999999
Q ss_pred CCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCc
Q 002833 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (875)
Q Consensus 259 ~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~ 338 (875)
.+||+||+.+.....+.. +. +....++.+++.+||.+..++.+++
T Consensus 89 ~~tv~~~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~- 133 (232)
T cd03218 89 KLTVEENILAVLEIRGLS----------KK------------------------EREEKLEELLEEFHITHLRKSKASS- 133 (232)
T ss_pred cCcHHHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCChhhhhCChhh-
Confidence 999999998764322110 00 0112356788999998887777654
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEe
Q 002833 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (875)
Q Consensus 339 ~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~ 418 (875)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|++. ++.+++|++++|+
T Consensus 134 ----LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~~~-~~~~~~d~i~~l~ 207 (232)
T cd03218 134 ----LSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-RGIGVLITDHNVR-ETLSITDRAYIIY 207 (232)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 999999999999999999999999999999999999999999999976 4789888877654 7889999999999
Q ss_pred CCeEEEecChhhH
Q 002833 419 EGQIVYQGPRDNV 431 (875)
Q Consensus 419 ~G~iv~~Gp~~~~ 431 (875)
+|++++.|+.+++
T Consensus 208 ~G~i~~~~~~~~~ 220 (232)
T cd03218 208 EGKVLAEGTPEEI 220 (232)
T ss_pred CCeEEEEeCHHHh
Confidence 9999999998765
No 60
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-38 Score=345.01 Aligned_cols=208 Identities=23% Similarity=0.316 Sum_probs=177.0
Q ss_pred cccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc-------CceEEEEecCC
Q 002833 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHD 254 (875)
Q Consensus 182 ~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~-------~~~~~yv~Q~d 254 (875)
+.+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++
T Consensus 35 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~ 111 (269)
T cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKELRELRRKKISMVFQSF 111 (269)
T ss_pred CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccChhhhhhhhcCcEEEEecCc
Confidence 3567999999999999999999999999999999999999986 9999999998754321 35699999999
Q ss_pred CCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCcccccc
Q 002833 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTM 334 (875)
Q Consensus 255 ~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 334 (875)
.+++.+||+||+.+.....+... . .....++++++.+||.+..++.
T Consensus 112 ~~~~~~tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~ 157 (269)
T cd03294 112 ALLPHRTVLENVAFGLEVQGVPR----------A------------------------EREERAAEALELVGLEGWEHKY 157 (269)
T ss_pred ccCCCCcHHHHHHHHHHhcCCCH----------H------------------------HHHHHHHHHHHHcCCHhHhhCC
Confidence 99999999999988754322100 0 0012356688999999888887
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeE
Q 002833 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (875)
Q Consensus 335 vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~v 414 (875)
+++ |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.++||++
T Consensus 158 ~~~-----LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~-~~~~~~~d~v 231 (269)
T cd03294 158 PDE-----LSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDL-DEALRLGDRI 231 (269)
T ss_pred ccc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEE
Confidence 764 9999999999999999999999999999999999999999999999865578999887765 4678899999
Q ss_pred EEEeCCeEEEecChhhHH
Q 002833 415 ILLSEGQIVYQGPRDNVL 432 (875)
Q Consensus 415 ilL~~G~iv~~Gp~~~~~ 432 (875)
++|++|++++.|+++++.
T Consensus 232 ~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 232 AIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999987763
No 61
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=2.9e-39 Score=337.93 Aligned_cols=195 Identities=24% Similarity=0.346 Sum_probs=165.5
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc------cCceEEEEecCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLHH 257 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~------~~~~~~yv~Q~d~~~ 257 (875)
+.+|+|+|++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 92 (216)
T TIGR00960 16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT---RGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLL 92 (216)
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEehhhcChhHHHHHHHhceEEecCcccc
Confidence 45999999999999999999999999999999999999986 999999999875432 135799999999999
Q ss_pred CCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccC
Q 002833 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (875)
Q Consensus 258 ~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (875)
+.+||.||+.+..+..+... . +....++++++.+||.+..++.++
T Consensus 93 ~~~tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~~~- 137 (216)
T TIGR00960 93 SDRTVYDNVAFPLRIIGVPP----------R------------------------DANERVSAALEKVGLEGKAHALPM- 137 (216)
T ss_pred ccccHHHHHHHHHHhcCCCH----------H------------------------HHHHHHHHHHHHcCChhhhhCChh-
Confidence 99999999998754322100 0 011235678899999888877776
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEE
Q 002833 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (875)
Q Consensus 338 ~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL 417 (875)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ +++.++||++++|
T Consensus 138 ----~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~-~~~~~~~d~i~~l 211 (216)
T TIGR00960 138 ----QLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR-RGTTVLVATHDI-NLVETYRHRTLTL 211 (216)
T ss_pred ----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 4999999999999999999999999999999999999999999999975 478888887765 4777899999999
Q ss_pred eCCeE
Q 002833 418 SEGQI 422 (875)
Q Consensus 418 ~~G~i 422 (875)
++|++
T Consensus 212 ~~G~i 216 (216)
T TIGR00960 212 SRGRL 216 (216)
T ss_pred eCCcC
Confidence 99974
No 62
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.2e-39 Score=370.71 Aligned_cols=209 Identities=24% Similarity=0.424 Sum_probs=180.9
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCC
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGE 259 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~ 259 (875)
+.+||+|+|++|+|||.+||+||||+||||+.++|-.+++|+ +|+|.+||+|+.++.+ ++.+|+|.|++.+|..
T Consensus 480 ~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pt---sG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~ 556 (716)
T KOG0058|consen 480 DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPT---SGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSG 556 (716)
T ss_pred CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCeehhhcCHHHHHHHeeeeeccceeecc
Confidence 467999999999999999999999999999999999999997 9999999999988765 5889999999999986
Q ss_pred CCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCcc
Q 002833 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (875)
Q Consensus 260 lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (875)
||+||+.|+.. ..+.++++.++..+..+.. +.++++.+||.||++.
T Consensus 557 -sI~eNI~YG~~-------------------------~~t~e~i~~AAk~ANah~F--------I~~~p~gY~T~VGEkG 602 (716)
T KOG0058|consen 557 -SIRENIAYGLD-------------------------NATDEEIEAAAKMANAHEF--------ITNFPDGYNTVVGEKG 602 (716)
T ss_pred -cHHHHHhcCCC-------------------------CCCHHHHHHHHHHhChHHH--------HHhCccccccccCCcc
Confidence 99999999753 1233444445544443322 4578999999999744
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeC
Q 002833 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (875)
Q Consensus 340 ~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~ 419 (875)
-.||||||||++|||||+.+|+||+|||.||+||+.+...+.+.|.++.+ ++|+++.-|.- ++.+.+|+|+|+++
T Consensus 603 -~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~rTVlvIAHRL--STV~~Ad~Ivvi~~ 677 (716)
T KOG0058|consen 603 -SQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ--GRTVLVIAHRL--STVRHADQIVVIDK 677 (716)
T ss_pred -ccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc--CCeEEEEehhh--hHhhhccEEEEEcC
Confidence 35999999999999999999999999999999999999999999999875 58888876654 58899999999999
Q ss_pred CeEEEecChhhHHH
Q 002833 420 GQIVYQGPRDNVLE 433 (875)
Q Consensus 420 G~iv~~Gp~~~~~~ 433 (875)
|++++.|.++++++
T Consensus 678 G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 678 GRVVEMGTHDELLS 691 (716)
T ss_pred CeEEecccHHHHhh
Confidence 99999999998864
No 63
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=6e-39 Score=336.41 Aligned_cols=203 Identities=29% Similarity=0.411 Sum_probs=172.6
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc--cCceEEEEecCCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEMT 261 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lT 261 (875)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|+..+++.+|
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 91 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELT 91 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccchHHHhhhEEEecCcCCccccCC
Confidence 56999999999999999999999999999999999999986 999999999875321 2456999999998899999
Q ss_pred HHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCC
Q 002833 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (875)
Q Consensus 262 V~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (875)
|+||+.+..+..+... .+ ....++++++.+||.+..++.+++
T Consensus 92 v~~~l~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~---- 133 (220)
T cd03263 92 VREHLRFYARLKGLPK----------SE------------------------IKEEVELLLRVLGLTDKANKRART---- 133 (220)
T ss_pred HHHHHHHHHHHcCCCH----------HH------------------------HHHHHHHHHHHcCCHHHHhChhhh----
Confidence 9999988654332110 00 011356688999998888877764
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCe
Q 002833 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (875)
Q Consensus 342 gLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~ 421 (875)
|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++++ +.|+|++.|++. ++.++||++++|++|+
T Consensus 134 -LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~-~~~~~~d~i~~l~~g~ 209 (220)
T cd03263 134 -LSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--GRSIILTTHSMD-EAEALCDRIAIMSDGK 209 (220)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEcCCHH-HHHHhcCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999875 478888877654 6778999999999999
Q ss_pred EEEecChhhH
Q 002833 422 IVYQGPRDNV 431 (875)
Q Consensus 422 iv~~Gp~~~~ 431 (875)
+++.|+++++
T Consensus 210 i~~~~~~~~~ 219 (220)
T cd03263 210 LRCIGSPQEL 219 (220)
T ss_pred EEecCCHHHc
Confidence 9999988764
No 64
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.9e-39 Score=346.57 Aligned_cols=216 Identities=26% Similarity=0.345 Sum_probs=177.9
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCC-CCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDL-HHGE 259 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~-~~~~ 259 (875)
..+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++. .++.
T Consensus 18 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 94 (274)
T PRK13647 18 TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFS 94 (274)
T ss_pred CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHhhEEEEecChhhhhcc
Confidence 45999999999999999999999999999999999999986 9999999998764322 356999999863 4567
Q ss_pred CCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCcc
Q 002833 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (875)
Q Consensus 260 lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (875)
+||.||+.|.....+.. +. +....++++++.+||.+..++.+.+
T Consensus 95 ~tv~e~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~L~~~~~~~~~~-- 138 (274)
T PRK13647 95 STVWDDVAFGPVNMGLD----------KD------------------------EVERRVEEALKAVRMWDFRDKPPYH-- 138 (274)
T ss_pred CcHHHHHHhhHHHcCCC----------HH------------------------HHHHHHHHHHHHCCCHHHhcCChhh--
Confidence 89999998864322110 00 0112356789999998888877764
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeC
Q 002833 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (875)
Q Consensus 340 ~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~ 419 (875)
|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++. +.|+|++.|+. +++.++||++++|++
T Consensus 139 ---LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tili~tH~~-~~~~~~~d~i~~l~~ 213 (274)
T PRK13647 139 ---LSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ-GKTVIVATHDV-DLAAEWADQVIVLKE 213 (274)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCH-HHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999999999999999864 88999987764 467789999999999
Q ss_pred CeEEEecChhhHH--HHHHHcCCCCC
Q 002833 420 GQIVYQGPRDNVL--EFFEHMGFKCP 443 (875)
Q Consensus 420 G~iv~~Gp~~~~~--~~F~~~Gf~~p 443 (875)
|+++++|+++++. +.++..|+.+|
T Consensus 214 G~i~~~g~~~~~~~~~~~~~~~~~~~ 239 (274)
T PRK13647 214 GRVLAEGDKSLLTDEDIVEQAGLRLP 239 (274)
T ss_pred CEEEEECCHHHhcCHHHHHHcCCCCC
Confidence 9999999987542 34445566554
No 65
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.8e-39 Score=339.93 Aligned_cols=205 Identities=28% Similarity=0.393 Sum_probs=173.5
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (875)
+.+|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHM 90 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCeEcCcCChHHhhcceEEEccCccccCCC
Confidence 46999999999999999999999999999999999999986 9999999998764322 35789999999999999
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCc--cccccccCc
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI--CADTMVGDE 338 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~--~~dt~vg~~ 338 (875)
||+||+.+..+..+... . +....+.++++.+||.+ ..++.+.
T Consensus 91 tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~l~l~~~~~~~~~~~-- 134 (242)
T cd03295 91 TVEENIALVPKLLKWPK----------E------------------------KIRERADELLALVGLDPAEFADRYPH-- 134 (242)
T ss_pred cHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCCcHHHHhcChh--
Confidence 99999988644322100 0 01123466889999985 5666554
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEe
Q 002833 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (875)
Q Consensus 339 ~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~ 418 (875)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++.+++|+|++|+
T Consensus 135 ---~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~ 210 (242)
T cd03295 135 ---ELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMK 210 (242)
T ss_pred ---hCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEE
Confidence 599999999999999999999999999999999999999999999998755789998887764 6788999999999
Q ss_pred CCeEEEecChhhH
Q 002833 419 EGQIVYQGPRDNV 431 (875)
Q Consensus 419 ~G~iv~~Gp~~~~ 431 (875)
+|++++.|+++++
T Consensus 211 ~G~i~~~~~~~~~ 223 (242)
T cd03295 211 NGEIVQVGTPDEI 223 (242)
T ss_pred CCEEEEecCHHHH
Confidence 9999999998765
No 66
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-38 Score=348.32 Aligned_cols=224 Identities=25% Similarity=0.363 Sum_probs=183.1
Q ss_pred ccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCC-------ccCceEEEEecCC-CC
Q 002833 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-------VPQRTCAYISQHD-LH 256 (875)
Q Consensus 185 ~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~-------~~~~~~~yv~Q~d-~~ 256 (875)
.+|+|||++|++||+++|+|||||||||||++|+|.++|+ +|+|+++|.++... ..++.++||+|++ ..
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~ 96 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQ 96 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEECccccccccHHHHHhhEEEEecCcchh
Confidence 5999999999999999999999999999999999999987 99999999987521 1246799999986 23
Q ss_pred CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCC-ccccccc
Q 002833 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMV 335 (875)
Q Consensus 257 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~v 335 (875)
+...||.|++.|+....+.. +.+ ....+.++++.+||. +..++.+
T Consensus 97 l~~~tv~~~l~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~~L~~~~~~~~~ 142 (288)
T PRK13643 97 LFEETVLKDVAFGPQNFGIP----------KEK------------------------AEKIAAEKLEMVGLADEFWEKSP 142 (288)
T ss_pred cccchHHHHHHhHHHHcCCC----------HHH------------------------HHHHHHHHHHHcCCChhhccCCc
Confidence 33469999999876433211 000 112356788999996 4566655
Q ss_pred cCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEE
Q 002833 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (875)
Q Consensus 336 g~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vi 415 (875)
. .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|+++|++ .++.++||+|+
T Consensus 143 ~-----~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~vtHd~-~~~~~~~dri~ 215 (288)
T PRK13643 143 F-----ELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-SGQTVVLVTHLM-DDVADYADYVY 215 (288)
T ss_pred c-----cCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEE
Confidence 4 5999999999999999999999999999999999999999999999976 488999987765 57888999999
Q ss_pred EEeCCeEEEecChhhHH---HHHHHcCCCCCCCCCHHHHH
Q 002833 416 LLSEGQIVYQGPRDNVL---EFFEHMGFKCPERKGVADFL 452 (875)
Q Consensus 416 lL~~G~iv~~Gp~~~~~---~~F~~~Gf~~p~~~~~adfl 452 (875)
+|++|+++++|+++++. ++++..|+.+|.....++.+
T Consensus 216 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 255 (288)
T PRK13643 216 LLEKGHIISCGTPSDVFQEVDFLKAHELGVPKATHFADQL 255 (288)
T ss_pred EEECCEEEEECCHHHHHcCHHHHHHcCCCCChHHHHHHHH
Confidence 99999999999998874 45667788887755554444
No 67
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=5.7e-39 Score=336.11 Aligned_cols=195 Identities=26% Similarity=0.381 Sum_probs=165.6
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc-------cCceEEEEecCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-------PQRTCAYISQHDLH 256 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~-------~~~~~~yv~Q~d~~ 256 (875)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 93 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNL 93 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC---ceeEEECCEehhhcchhHHHHHHhhcEEEEeecccc
Confidence 56999999999999999999999999999999999999986 999999999876532 13569999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCcccccccc
Q 002833 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (875)
Q Consensus 257 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (875)
++.+||+||+.+.....+... . +....++.+++.+||++..++.++
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~~~ 139 (218)
T cd03255 94 LPDLTALENVELPLLLAGVPK----------K------------------------ERRERAEELLERVGLGDRLNHYPS 139 (218)
T ss_pred CCCCcHHHHHHHHHhhcCCCH----------H------------------------HHHHHHHHHHHHcCCchhhhcChh
Confidence 999999999998754332100 0 001235678899999887777765
Q ss_pred CccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEE
Q 002833 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (875)
Q Consensus 337 ~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vil 416 (875)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++. +||++++
T Consensus 140 -----~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~-~~d~v~~ 212 (218)
T cd03255 140 -----ELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LAE-YADRIIE 212 (218)
T ss_pred -----hcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHh-hhcEEEE
Confidence 499999999999999999999999999999999999999999999998645889999888765 454 8999999
Q ss_pred EeCCeE
Q 002833 417 LSEGQI 422 (875)
Q Consensus 417 L~~G~i 422 (875)
|++|++
T Consensus 213 l~~G~i 218 (218)
T cd03255 213 LRDGKI 218 (218)
T ss_pred eeCCcC
Confidence 999974
No 68
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=8e-39 Score=340.48 Aligned_cols=214 Identities=25% Similarity=0.327 Sum_probs=173.6
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc------cCceEEEEecCCCC
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLH 256 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~------~~~~~~yv~Q~d~~ 256 (875)
++++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+
T Consensus 14 ~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~ 90 (243)
T TIGR02315 14 GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNL 90 (243)
T ss_pred CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcc
Confidence 356999999999999999999999999999999999999886 999999999875432 14569999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCcccccccc
Q 002833 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (875)
Q Consensus 257 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (875)
++.+||+||+.++....... ...+.. ..+ .+....++++++.+||.+..+..+.
T Consensus 91 ~~~~tv~~~l~~~~~~~~~~-----~~~~~~------~~~---------------~~~~~~~~~~l~~~~l~~~~~~~~~ 144 (243)
T TIGR02315 91 IERLTVLENVLHGRLGYKPT-----WRSLLG------RFS---------------EEDKERALSALERVGLADKAYQRAD 144 (243)
T ss_pred cccccHHHHHhhcccccccc-----hhhhhc------ccc---------------HHHHHHHHHHHHHcCcHhhhcCCcc
Confidence 99999999998753211000 000000 000 0011235668899999877776665
Q ss_pred CccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEE
Q 002833 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (875)
Q Consensus 337 ~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vil 416 (875)
.|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++++..+.|+|++.|++. ++.++||++++
T Consensus 145 -----~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~ 218 (243)
T TIGR02315 145 -----QLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVG 218 (243)
T ss_pred -----cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEE
Confidence 599999999999999999999999999999999999999999999997655788888877654 67789999999
Q ss_pred EeCCeEEEecChhhH
Q 002833 417 LSEGQIVYQGPRDNV 431 (875)
Q Consensus 417 L~~G~iv~~Gp~~~~ 431 (875)
|++|++++.|+++++
T Consensus 219 l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 219 LKAGEIVFDGAPSEL 233 (243)
T ss_pred EECCEEEecCCHHHh
Confidence 999999999988764
No 69
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-38 Score=346.70 Aligned_cols=217 Identities=23% Similarity=0.313 Sum_probs=180.7
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCC-CCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHD-LHHGE 259 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d-~~~~~ 259 (875)
+.+|+|||++|++||+++|+||||||||||+++|+|+++|. +|+|.++|.++..... ++.++|++|++ ..++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (279)
T PRK13650 20 KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVG 96 (279)
T ss_pred CeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHHhhceEEEcChHHhccc
Confidence 45999999999999999999999999999999999999986 9999999998864322 35799999996 46778
Q ss_pred CCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCcc
Q 002833 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (875)
Q Consensus 260 lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (875)
+||+||+.|+.+..+.. +. +....++++++.+||++..+..+++
T Consensus 97 ~tv~eni~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gL~~~~~~~~~~-- 140 (279)
T PRK13650 97 ATVEDDVAFGLENKGIP----------HE------------------------EMKERVNEALELVGMQDFKEREPAR-- 140 (279)
T ss_pred ccHHHHHHhhHHhCCCC----------HH------------------------HHHHHHHHHHHHCCCHhHhhCCccc--
Confidence 89999999875432211 00 0112356789999999888877764
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeC
Q 002833 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (875)
Q Consensus 340 ~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~ 419 (875)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..|.|+|++.|++. ++ ..||++++|++
T Consensus 141 ---LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~ 215 (279)
T PRK13650 141 ---LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKN 215 (279)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999998756899999988764 55 57999999999
Q ss_pred CeEEEecChhhHH---HHHHHcCCCCCC
Q 002833 420 GQIVYQGPRDNVL---EFFEHMGFKCPE 444 (875)
Q Consensus 420 G~iv~~Gp~~~~~---~~F~~~Gf~~p~ 444 (875)
|+++..|+++++. ..++..|+.+|.
T Consensus 216 G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 243 (279)
T PRK13650 216 GQVESTSTPRELFSRGNDLLQLGLDIPF 243 (279)
T ss_pred CEEEEECCHHHHHcChHHHHHcCCCCcH
Confidence 9999999998765 235556666444
No 70
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=1.1e-38 Score=350.46 Aligned_cols=206 Identities=29% Similarity=0.443 Sum_probs=177.9
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc--cCceEEEEecCCCCCCCC
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEM 260 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~l 260 (875)
++.+|+|+|+.|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++|++|++.+++.+
T Consensus 14 ~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~ 90 (301)
T TIGR03522 14 TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDM 90 (301)
T ss_pred CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChHHHHhceEEecCCCCCCCCC
Confidence 356999999999999999999999999999999999999987 999999999875422 246799999999999999
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccC
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (875)
||.||+.|.++..+... . +....++.+++.+||.+..|+.+++
T Consensus 91 tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~gl~~~~~~~~~~--- 133 (301)
T TIGR03522 91 YVREYLQFIAGIYGMKG----------Q------------------------LLKQRVEEMIELVGLRPEQHKKIGQ--- 133 (301)
T ss_pred cHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHCCCchHhcCchhh---
Confidence 99999998765543210 0 0112356789999999988888764
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCC
Q 002833 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (875)
Q Consensus 341 rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G 420 (875)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|++.|++ +++.++||+|++|++|
T Consensus 134 --LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~--~~tiii~sH~l-~~~~~~~d~i~~l~~G 208 (301)
T TIGR03522 134 --LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK--DKTIILSTHIM-QEVEAICDRVIIINKG 208 (301)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC--CCEEEEEcCCH-HHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999864 68888887665 4888999999999999
Q ss_pred eEEEecChhhHHH
Q 002833 421 QIVYQGPRDNVLE 433 (875)
Q Consensus 421 ~iv~~Gp~~~~~~ 433 (875)
++++.|+.+++..
T Consensus 209 ~i~~~g~~~~~~~ 221 (301)
T TIGR03522 209 KIVADKKLDELSA 221 (301)
T ss_pred EEEEeCCHHHHHH
Confidence 9999999998754
No 71
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1.5e-38 Score=333.74 Aligned_cols=203 Identities=25% Similarity=0.387 Sum_probs=170.6
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc----CceEEEEecCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (875)
+++|+|+|+.+++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (222)
T cd03224 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPE 89 (222)
T ss_pred eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCCCCHHHHHhcCeEEeccccccCCC
Confidence 46999999999999999999999999999999999999986 9999999998765332 3569999999999999
Q ss_pred CCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHh-CCCccccccccCc
Q 002833 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL-GLDICADTMVGDE 338 (875)
Q Consensus 260 lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l-gL~~~~dt~vg~~ 338 (875)
+||+||+.+.....+. . +....++.+++.+ ++.+..++.++
T Consensus 90 ~t~~~~l~~~~~~~~~------------~------------------------~~~~~~~~~l~~~~~l~~~~~~~~~-- 131 (222)
T cd03224 90 LTVEENLLLGAYARRR------------A------------------------KRKARLERVYELFPRLKERRKQLAG-- 131 (222)
T ss_pred CcHHHHHHHHhhhcCc------------h------------------------hHHHHHHHHHHHHHhhhhhhhCchh--
Confidence 9999999886432210 0 0011234566676 57766676665
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEe
Q 002833 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (875)
Q Consensus 339 ~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~ 418 (875)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.++||++++|+
T Consensus 132 ---~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~ 206 (222)
T cd03224 132 ---TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-EGVTILLVEQNA-RFALEIADRAYVLE 206 (222)
T ss_pred ---hCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhccEEEEee
Confidence 4999999999999999999999999999999999999999999999976 578988887765 47788999999999
Q ss_pred CCeEEEecChhhHH
Q 002833 419 EGQIVYQGPRDNVL 432 (875)
Q Consensus 419 ~G~iv~~Gp~~~~~ 432 (875)
+|+++..|+++++.
T Consensus 207 ~G~i~~~~~~~~~~ 220 (222)
T cd03224 207 RGRVVLEGTAAELL 220 (222)
T ss_pred CCeEEEeCCHHHHh
Confidence 99999999987653
No 72
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-38 Score=335.90 Aligned_cols=201 Identities=19% Similarity=0.285 Sum_probs=169.4
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc-------CceEEEEecCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHDLH 256 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~-------~~~~~yv~Q~d~~ 256 (875)
+.+|+|+|++|++||+++|+|||||||||||++|+|+++|+ +|+|+++|+++..... ++.++|++|+..+
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~ 98 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT---SGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHL 98 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCCHHHHHHHHhccEEEEecCccc
Confidence 46999999999999999999999999999999999999886 9999999998865432 2569999999989
Q ss_pred CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCcccccccc
Q 002833 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (875)
Q Consensus 257 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (875)
++.+||+||+.+.....+... . +....++++++.+||++..++.++
T Consensus 99 ~~~~tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~gl~~~~~~~~~ 144 (233)
T PRK11629 99 LPDFTALENVAMPLLIGKKKP----------A------------------------EINSRALEMLAAVGLEHRANHRPS 144 (233)
T ss_pred CCCCCHHHHHHHHHHhcCCCH----------H------------------------HHHHHHHHHHHHcCCchhhhCChh
Confidence 999999999998654321100 0 011235678899999887777665
Q ss_pred CccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEE
Q 002833 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (875)
Q Consensus 337 ~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vil 416 (875)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++.. +|++++
T Consensus 145 -----~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~-~~~~-~~~~~~ 217 (233)
T PRK11629 145 -----ELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ-LAKR-MSRQLE 217 (233)
T ss_pred -----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHh-hCEEEE
Confidence 499999999999999999999999999999999999999999999997655889999888764 4544 689999
Q ss_pred EeCCeEEEecCh
Q 002833 417 LSEGQIVYQGPR 428 (875)
Q Consensus 417 L~~G~iv~~Gp~ 428 (875)
|++|++++.|+.
T Consensus 218 l~~G~i~~~~~~ 229 (233)
T PRK11629 218 MRDGRLTAELSL 229 (233)
T ss_pred EECCEEEEEecc
Confidence 999999998864
No 73
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-38 Score=332.36 Aligned_cols=198 Identities=26% Similarity=0.361 Sum_probs=168.6
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHH
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (875)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.. ..++.++|++|+..+++.+||+
T Consensus 13 ~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~ 88 (210)
T cd03269 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVI 88 (210)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHH
Confidence 46999999999999999999999999999999999999886 9999999988754 2356799999999999999999
Q ss_pred HHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCC
Q 002833 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (875)
Q Consensus 264 EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (875)
||+.+....++... . +....++++++.+||++..++.++ .|
T Consensus 89 e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~L 129 (210)
T cd03269 89 DQLVYLAQLKGLKK----------E------------------------EARRRIDEWLERLELSEYANKRVE-----EL 129 (210)
T ss_pred HHHHHHHHHcCCCh----------H------------------------HHHHHHHHHHHHcCChHHHhCcHh-----hC
Confidence 99988654332110 0 011235678899999888877765 49
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCeEE
Q 002833 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIV 423 (875)
Q Consensus 344 SGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~iv 423 (875)
||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.|++. ++.+++|++++|++|+++
T Consensus 130 S~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~ 207 (210)
T cd03269 130 SKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELAR-AGKTVILSTHQME-LVEELCDRVLLLNKGRAV 207 (210)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEECCCHH-HHHHhhhEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999999876 4788888877654 677899999999999998
Q ss_pred Eec
Q 002833 424 YQG 426 (875)
Q Consensus 424 ~~G 426 (875)
+.|
T Consensus 208 ~~~ 210 (210)
T cd03269 208 LYG 210 (210)
T ss_pred ecC
Confidence 764
No 74
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=1.2e-38 Score=331.32 Aligned_cols=195 Identities=29% Similarity=0.419 Sum_probs=167.7
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCC-ccCceEEEEecCCCCCCCCCH
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-VPQRTCAYISQHDLHHGEMTV 262 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~-~~~~~~~yv~Q~d~~~~~lTV 262 (875)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.++|++|++.+++.+||
T Consensus 13 ~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (208)
T cd03268 13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTA 89 (208)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCCcccchHHHHhhEEEecCCCccCccCcH
Confidence 56999999999999999999999999999999999999886 99999999876532 124579999999989999999
Q ss_pred HHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCC
Q 002833 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (875)
Q Consensus 263 ~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (875)
+||+.+.....+. ....++++++.+||.+..++.++.
T Consensus 90 ~e~l~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~~~----- 126 (208)
T cd03268 90 RENLRLLARLLGI--------------------------------------RKKRIDEVLDVVGLKDSAKKKVKG----- 126 (208)
T ss_pred HHHHHHHHHhcCC--------------------------------------cHHHHHHHHHHcCCHHHHhhhHhh-----
Confidence 9999886432110 011246688999998888777664
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCeE
Q 002833 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (875)
Q Consensus 343 LSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~i 422 (875)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.|++. ++.+++|++++|++|++
T Consensus 127 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~-~~~~~~d~v~~l~~g~i 204 (208)
T cd03268 127 FSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD-QGITVLISSHLLS-EIQKVADRIGIINKGKL 204 (208)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHH-HHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999986 5789888877654 67789999999999999
Q ss_pred EEec
Q 002833 423 VYQG 426 (875)
Q Consensus 423 v~~G 426 (875)
++.|
T Consensus 205 ~~~g 208 (208)
T cd03268 205 IEEG 208 (208)
T ss_pred EecC
Confidence 8765
No 75
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-38 Score=356.83 Aligned_cols=207 Identities=22% Similarity=0.295 Sum_probs=178.1
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc-------CceEEEEecCCC
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHDL 255 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~-------~~~~~yv~Q~d~ 255 (875)
...+|+|+|+.|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++|++|+..
T Consensus 40 ~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~---sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~ 116 (400)
T PRK10070 40 LSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFA 116 (400)
T ss_pred CeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCc
Confidence 346899999999999999999999999999999999999996 9999999999865432 247999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccc
Q 002833 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335 (875)
Q Consensus 256 ~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v 335 (875)
+++++||+||+.|.....+... .+ ....++++++.+||.+..++.+
T Consensus 117 l~~~~Tv~enl~~~~~~~~~~~----------~~------------------------~~~~~~e~L~~~gL~~~~~~~~ 162 (400)
T PRK10070 117 LMPHMTVLDNTAFGMELAGINA----------EE------------------------RREKALDALRQVGLENYAHSYP 162 (400)
T ss_pred CCCCCCHHHHHHHHHHhcCCCH----------HH------------------------HHHHHHHHHHHcCCChhhhcCc
Confidence 9999999999998765433210 00 1123567899999998888776
Q ss_pred cCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEE
Q 002833 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (875)
Q Consensus 336 g~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vi 415 (875)
. .|||||||||+||++|+.+|++|||||||+|||+.++.++.+.|+++.+..++|+|+++|++ +++.+++|+|+
T Consensus 163 ~-----~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~-~~~~~~~Dri~ 236 (400)
T PRK10070 163 D-----ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDL-DEAMRIGDRIA 236 (400)
T ss_pred c-----cCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCH-HHHHHhCCEEE
Confidence 5 49999999999999999999999999999999999999999999999865688999887765 57889999999
Q ss_pred EEeCCeEEEecChhhHH
Q 002833 416 LLSEGQIVYQGPRDNVL 432 (875)
Q Consensus 416 lL~~G~iv~~Gp~~~~~ 432 (875)
+|++|+++..|+++++.
T Consensus 237 vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 237 IMQNGEVVQVGTPDEIL 253 (400)
T ss_pred EEECCEEEecCCHHHHH
Confidence 99999999999988763
No 76
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.4e-38 Score=330.20 Aligned_cols=192 Identities=28% Similarity=0.343 Sum_probs=163.3
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCC-CCCCCCH
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDL-HHGEMTV 262 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~-~~~~lTV 262 (875)
+++|+|+|+.+++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++.....++.++|++|++. .+..+||
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv 89 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSV 89 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEhhhHHhhcceEEEecChhhhhhhccH
Confidence 56999999999999999999999999999999999999986 9999999998754333467999999964 3456899
Q ss_pred HHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCC
Q 002833 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (875)
Q Consensus 263 ~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (875)
+||+.+.....+. ....++++++.+||.+..++.++ .
T Consensus 90 ~e~l~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~ 126 (205)
T cd03226 90 REELLLGLKELDA--------------------------------------GNEQAETVLKDLDLYALKERHPL-----S 126 (205)
T ss_pred HHHHhhhhhhcCc--------------------------------------cHHHHHHHHHHcCCchhcCCCch-----h
Confidence 9999875421100 01134668899999988887776 4
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCeE
Q 002833 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (875)
Q Consensus 343 LSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~i 422 (875)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|++. ++.++||++++|++|++
T Consensus 127 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i 204 (205)
T cd03226 127 LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA-QGKAVIVITHDYE-FLAKVCDRVLLLANGAI 204 (205)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999976 4889999887654 67789999999999997
Q ss_pred E
Q 002833 423 V 423 (875)
Q Consensus 423 v 423 (875)
+
T Consensus 205 v 205 (205)
T cd03226 205 V 205 (205)
T ss_pred C
Confidence 5
No 77
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=2.3e-38 Score=342.43 Aligned_cols=206 Identities=23% Similarity=0.360 Sum_probs=174.0
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc------cCceEEEEecCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLHH 257 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~------~~~~~~yv~Q~d~~~ 257 (875)
+.+|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|+..++
T Consensus 20 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 96 (269)
T PRK11831 20 RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALF 96 (269)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccChhhHHHHhhcEEEEecccccC
Confidence 46999999999999999999999999999999999999986 999999999876432 135699999999899
Q ss_pred CCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccC
Q 002833 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (875)
Q Consensus 258 ~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (875)
+.+||.||+.+....... ..+. .....+..+++.+||.+..++.+++
T Consensus 97 ~~~tv~enl~~~~~~~~~---------~~~~------------------------~~~~~~~~~l~~~gl~~~~~~~~~~ 143 (269)
T PRK11831 97 TDMNVFDNVAYPLREHTQ---------LPAP------------------------LLHSTVMMKLEAVGLRGAAKLMPSE 143 (269)
T ss_pred CCCCHHHHHHHHHHHccC---------CCHH------------------------HHHHHHHHHHHHcCChhhhhCChhh
Confidence 999999999886422100 0000 0012345678999999888877764
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEE
Q 002833 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (875)
Q Consensus 338 ~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL 417 (875)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++ +++.++||++++|
T Consensus 144 -----LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~v~~l 217 (269)
T PRK11831 144 -----LSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDV-PEVLSIADHAYIV 217 (269)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhhCEEEEE
Confidence 9999999999999999999999999999999999999999999999865578988887764 4788899999999
Q ss_pred eCCeEEEecChhhH
Q 002833 418 SEGQIVYQGPRDNV 431 (875)
Q Consensus 418 ~~G~iv~~Gp~~~~ 431 (875)
++|++++.|+++++
T Consensus 218 ~~G~i~~~g~~~~~ 231 (269)
T PRK11831 218 ADKKIVAHGSAQAL 231 (269)
T ss_pred ECCEEEEeCCHHHH
Confidence 99999999998876
No 78
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=1.7e-38 Score=334.76 Aligned_cols=204 Identities=23% Similarity=0.340 Sum_probs=169.3
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc-----CCCCCCccEEEECCEeCCCCc-----cCceEEEEecC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL-----GKDLRASGKITYCGHELNEFV-----PQRTCAYISQH 253 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l-----~~~~~~sG~I~~nG~~~~~~~-----~~~~~~yv~Q~ 253 (875)
+.+|+|+|++|++||+++|+|||||||||||++|+|.+ +|. +|+|.++|+++.... .++.++|++|+
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~ 89 (227)
T cd03260 13 KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD---EGEVLLDGKDIYDLDVDVLELRRRVGMVFQK 89 (227)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC---CeEEEECCEEhhhcchHHHHHHhhEEEEecC
Confidence 46999999999999999999999999999999999999 775 999999999875432 24579999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccc
Q 002833 254 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (875)
Q Consensus 254 d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 333 (875)
+.++ .+||+||+.++.+..+... +. +....++++++.+||.+..+.
T Consensus 90 ~~~~-~~tv~e~l~~~~~~~~~~~---------~~------------------------~~~~~~~~~l~~~~l~~~~~~ 135 (227)
T cd03260 90 PNPF-PGSIYDNVAYGLRLHGIKL---------KE------------------------ELDERVEEALRKAALWDEVKD 135 (227)
T ss_pred chhc-cccHHHHHHhHHHhcCCCc---------HH------------------------HHHHHHHHHHHHcCCChHHhc
Confidence 8887 7999999988754322100 00 001235668899999877666
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCe
Q 002833 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (875)
Q Consensus 334 ~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~ 413 (875)
.+. ++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++. .|+|++.|++ +++.++||+
T Consensus 136 ~~~---~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~tii~~sH~~-~~~~~~~d~ 209 (227)
T cd03260 136 RLH---ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE--YTIVIVTHNM-QQAARVADR 209 (227)
T ss_pred cCC---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC--cEEEEEeccH-HHHHHhCCE
Confidence 531 2469999999999999999999999999999999999999999999999763 7888887765 477889999
Q ss_pred EEEEeCCeEEEecChhh
Q 002833 414 IILLSEGQIVYQGPRDN 430 (875)
Q Consensus 414 vilL~~G~iv~~Gp~~~ 430 (875)
+++|++|++++.|++++
T Consensus 210 i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 210 TAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred EEEEeCCEEEEecCccc
Confidence 99999999999998765
No 79
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=6.3e-38 Score=374.43 Aligned_cols=207 Identities=27% Similarity=0.371 Sum_probs=174.1
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (875)
+++|+|+|++|+||+.++|+||||||||||+++|+|++ |. +|+|.+||+++.+... ++.++||+|++.+|..
T Consensus 363 ~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~- 437 (588)
T PRK11174 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDPESWRKHLSWVGQNPQLPHG- 437 (588)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCHHHHHhheEEecCCCcCCCc-
Confidence 46999999999999999999999999999999999999 75 9999999999987654 5789999999888765
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccC
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (875)
|++|||.++. |+.+.+++.+++...+. ++.+ -.|++..||.||+. .
T Consensus 438 TI~eNI~~g~-------------------------~~~~~eei~~al~~a~l------~~~i--~~lp~G~dT~vge~-G 483 (588)
T PRK11174 438 TLRDNVLLGN-------------------------PDASDEQLQQALENAWV------SEFL--PLLPQGLDTPIGDQ-A 483 (588)
T ss_pred CHHHHhhcCC-------------------------CCCCHHHHHHHHHHhCH------HHHH--HhcccccccccccC-C
Confidence 9999998862 12223344444433322 2222 35667889999975 4
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCC
Q 002833 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (875)
Q Consensus 341 rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G 420 (875)
..||||||||++|||||+.+|++|+||||||+||+.++..|.+.|+++. .++|+|+..|++ ++.+.||+|++|++|
T Consensus 484 ~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvIiItHrl--~~i~~aD~Iivl~~G 559 (588)
T PRK11174 484 AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS--RRQTTLMVTHQL--EDLAQWDQIWVMQDG 559 (588)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEecCh--HHHHhCCEEEEEeCC
Confidence 5699999999999999999999999999999999999999999999985 378999988887 467889999999999
Q ss_pred eEEEecChhhHHH
Q 002833 421 QIVYQGPRDNVLE 433 (875)
Q Consensus 421 ~iv~~Gp~~~~~~ 433 (875)
+++..|+++++.+
T Consensus 560 ~i~e~G~~~eL~~ 572 (588)
T PRK11174 560 QIVQQGDYAELSQ 572 (588)
T ss_pred eEeecCCHHHHHh
Confidence 9999999998753
No 80
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=4e-38 Score=331.88 Aligned_cols=203 Identities=35% Similarity=0.525 Sum_probs=170.4
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC---CCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG---KDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEM 260 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~---~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~l 260 (875)
+++|+|+|++|++||+++|+||||||||||+|+|+|.++ |+ +|+|.++|+++.....++.++|++|++.+++.+
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~ 96 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTT---SGQILFNGQPRKPDQFQKCVAYVRQDDILLPGL 96 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCC---ceEEEECCEECChHHhcccEEEeCCCCccCcCC
Confidence 679999999999999999999999999999999999998 65 999999999875433457799999999999999
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHH-HHHHhCCCccccccccCcc
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDY-VLKILGLDICADTMVGDEM 339 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-iL~~lgL~~~~dt~vg~~~ 339 (875)
||+||+.|+......... .+. ......+. .++.+++.+..++.++
T Consensus 97 tv~enl~~~~~~~~~~~~-------~~~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~--- 142 (226)
T cd03234 97 TVRETLTYTAILRLPRKS-------SDA------------------------IRKKRVEDVLLRDLALTRIGGNLVK--- 142 (226)
T ss_pred cHHHHHHHHHHhhccccc-------chH------------------------HHHHHHHHHHHHhhcchhhhccccc---
Confidence 999999987543221100 000 00011233 7888898877766655
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeC
Q 002833 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (875)
Q Consensus 340 ~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~ 419 (875)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+. +.|+|++.|++..++.++||++++|++
T Consensus 143 --~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~-~~tiii~sh~~~~~~~~~~d~i~~l~~ 219 (226)
T cd03234 143 --GISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARR-NRIVILTIHQPRSDLFRLFDRILLLSS 219 (226)
T ss_pred --CcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHhCCEEEEEeC
Confidence 59999999999999999999999999999999999999999999998764 789999988876689999999999999
Q ss_pred CeEEEec
Q 002833 420 GQIVYQG 426 (875)
Q Consensus 420 G~iv~~G 426 (875)
|+++++|
T Consensus 220 G~i~~~g 226 (226)
T cd03234 220 GEIVYSG 226 (226)
T ss_pred CEEEecC
Confidence 9999875
No 81
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=4.1e-38 Score=333.94 Aligned_cols=205 Identities=27% Similarity=0.404 Sum_probs=172.7
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc--CceEEEEecCCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP--QRTCAYISQHDLHHGEMT 261 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~--~~~~~yv~Q~d~~~~~lT 261 (875)
+.+|+|+|+.|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++..... .+.++|++|++.+++.+|
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t 90 (236)
T TIGR03864 14 RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLS 90 (236)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCc
Confidence 46999999999999999999999999999999999999986 9999999998754322 246999999988889999
Q ss_pred HHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCC
Q 002833 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (875)
Q Consensus 262 V~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (875)
|+||+.+.....+.. .. +....++++++.+||.+..++.+++
T Consensus 91 ~~~~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gl~~~~~~~~~~---- 132 (236)
T TIGR03864 91 VRQNLRYHAALHGLS----------RA------------------------EARERIAALLARLGLAERADDKVRE---- 132 (236)
T ss_pred HHHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCChhhhcCChhh----
Confidence 999998764332110 00 0011346688899998888877764
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCe
Q 002833 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (875)
Q Consensus 342 gLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~ 421 (875)
|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++++..+.|+|++.|++. ++. .+|++++|++|+
T Consensus 133 -LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~-~~d~i~~l~~G~ 209 (236)
T TIGR03864 133 -LNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD-EIE-ADDRLVVLHRGR 209 (236)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh-hHh-hCCEEEEEeCCe
Confidence 99999999999999999999999999999999999999999999998655789999887765 454 599999999999
Q ss_pred EEEecChhhHH
Q 002833 422 IVYQGPRDNVL 432 (875)
Q Consensus 422 iv~~Gp~~~~~ 432 (875)
+++.|+++++.
T Consensus 210 i~~~~~~~~~~ 220 (236)
T TIGR03864 210 VLADGAAAELR 220 (236)
T ss_pred EEEeCCHHHHH
Confidence 99999987664
No 82
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=2.4e-38 Score=331.34 Aligned_cols=198 Identities=31% Similarity=0.452 Sum_probs=168.8
Q ss_pred ccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc--cCceEEEEecCCCCCCCCCH
Q 002833 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEMTV 262 (875)
Q Consensus 185 ~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lTV 262 (875)
++|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++|++|++.+++.+||
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 95 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTA 95 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCH
Confidence 6999999999999999999999999999999999999986 999999999875421 24679999999999999999
Q ss_pred HHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCC
Q 002833 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (875)
Q Consensus 263 ~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (875)
+||+.+.....+.. .. +....++++++.+||.+..+..+++
T Consensus 96 ~e~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~----- 136 (218)
T cd03266 96 RENLEYFAGLYGLK----------GD------------------------ELTARLEELADRLGMEELLDRRVGG----- 136 (218)
T ss_pred HHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCCHHHHhhhhhh-----
Confidence 99998764432210 00 0112356788999998888877664
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCeE
Q 002833 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (875)
Q Consensus 343 LSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~i 422 (875)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|++.|++ .++.+++|++++|++|++
T Consensus 137 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~-~~~~~~~d~i~~l~~G~i 214 (218)
T cd03266 137 FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-LGKCILFSTHIM-QEVERLCDRVVVLHRGRV 214 (218)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999975 478999887765 477889999999999999
Q ss_pred EEec
Q 002833 423 VYQG 426 (875)
Q Consensus 423 v~~G 426 (875)
++.|
T Consensus 215 ~~~~ 218 (218)
T cd03266 215 VYEG 218 (218)
T ss_pred eecC
Confidence 8764
No 83
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=3e-36 Score=387.38 Aligned_cols=220 Identities=24% Similarity=0.329 Sum_probs=186.9
Q ss_pred hhhccccCCcc-cccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc--cCceE
Q 002833 171 LGLLHLVPSKK-RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTC 247 (875)
Q Consensus 171 l~~~~~~~~~~-~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~--~~~~~ 247 (875)
+++.++.+.+. +++.+|+|+|+.+++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.+
T Consensus 929 L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~Pt---sG~I~i~G~dI~~~~~~~r~~I 1005 (2272)
T TIGR01257 929 VCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPT---SGTVLVGGKDIETNLDAVRQSL 1005 (2272)
T ss_pred EEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCC---ceEEEECCEECcchHHHHhhcE
Confidence 44455554443 3467999999999999999999999999999999999999997 999999999875321 24679
Q ss_pred EEEecCCCCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCC
Q 002833 248 AYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGL 327 (875)
Q Consensus 248 ~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL 327 (875)
||++|++.+++.+||+|++.|.++.++... . +.+..++++|+.+||
T Consensus 1006 G~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~----------~------------------------~~~~~v~~lL~~vgL 1051 (2272)
T TIGR01257 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSW----------E------------------------EAQLEMEAMLEDTGL 1051 (2272)
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHhcCCCH----------H------------------------HHHHHHHHHHHHcCC
Confidence 999999999999999999999876554310 0 011235678999999
Q ss_pred CccccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhH
Q 002833 328 DICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPET 407 (875)
Q Consensus 328 ~~~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei 407 (875)
++..|..+++ |||||||||+||+||+++|++++|||||+|||+.++..+.+.|+++. .|+|+|+++|+ .+++
T Consensus 1052 ~~~~~~~~~~-----LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~--~g~TIIltTHd-mdea 1123 (2272)
T TIGR01257 1052 HHKRNEEAQD-----LSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR--SGRTIIMSTHH-MDEA 1123 (2272)
T ss_pred chhhcCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh--CCCEEEEEECC-HHHH
Confidence 9988888765 99999999999999999999999999999999999999999999994 38899988766 4578
Q ss_pred HhhcCeEEEEeCCeEEEecChhhHHHHH
Q 002833 408 YDLFDDIILLSEGQIVYQGPRDNVLEFF 435 (875)
Q Consensus 408 ~~lfD~vilL~~G~iv~~Gp~~~~~~~F 435 (875)
..++|+|++|++|+++..|+++.+.+-|
T Consensus 1124 ~~laDrI~iL~~GkL~~~Gs~~~Lk~~~ 1151 (2272)
T TIGR01257 1124 DLLGDRIAIISQGRLYCSGTPLFLKNCF 1151 (2272)
T ss_pred HHhCCEEEEEECCEEEEecCHHHHHHhc
Confidence 8899999999999999999999988665
No 84
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-38 Score=342.11 Aligned_cols=217 Identities=25% Similarity=0.371 Sum_probs=180.4
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCC-CCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHD-LHHGE 259 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d-~~~~~ 259 (875)
+.+|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++ ..++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~ 96 (279)
T PRK13635 20 TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVG 96 (279)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHhhheEEEEeCHHHhccc
Confidence 45999999999999999999999999999999999999996 9999999998865322 45799999997 36777
Q ss_pred CCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCcc
Q 002833 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (875)
Q Consensus 260 lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (875)
+||.||+.+.....+.. .. +....++++++.+||.+..++.++.
T Consensus 97 ~tv~enl~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gL~~~~~~~~~~-- 140 (279)
T PRK13635 97 ATVQDDVAFGLENIGVP----------RE------------------------EMVERVDQALRQVGMEDFLNREPHR-- 140 (279)
T ss_pred ccHHHHHhhhHhhCCCC----------HH------------------------HHHHHHHHHHHHcCChhhhhCCccc--
Confidence 89999998865432110 00 0112357789999999888887764
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeC
Q 002833 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (875)
Q Consensus 340 ~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~ 419 (875)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++. .||++++|++
T Consensus 141 ---LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~~-~~d~i~~l~~ 215 (279)
T PRK13635 141 ---LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EAA-QADRVIVMNK 215 (279)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HHH-cCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999998755889999888765 454 5999999999
Q ss_pred CeEEEecChhhHHH---HHHHcCCCCCC
Q 002833 420 GQIVYQGPRDNVLE---FFEHMGFKCPE 444 (875)
Q Consensus 420 G~iv~~Gp~~~~~~---~F~~~Gf~~p~ 444 (875)
|++++.|+++++.. .+...|+.+|.
T Consensus 216 G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 243 (279)
T PRK13635 216 GEILEEGTPEEIFKSGHMLQEIGLDVPF 243 (279)
T ss_pred CEEEEECCHHHHhcCHHHHHHcCCCCCh
Confidence 99999999987653 45555665543
No 85
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=3.8e-38 Score=349.70 Aligned_cols=208 Identities=21% Similarity=0.277 Sum_probs=174.3
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc------cCceEEEEecCC--C
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHD--L 255 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~------~~~~~~yv~Q~d--~ 255 (875)
..+|+|||++|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|+++.... .++.++||+|++ .
T Consensus 34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~ 110 (331)
T PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKAT---DGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLAS 110 (331)
T ss_pred eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CcEEEECCEECCcCCHHHHHHHhCceEEEecCchhh
Confidence 56999999999999999999999999999999999999986 999999999986543 135799999997 5
Q ss_pred CCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCC-cccccc
Q 002833 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTM 334 (875)
Q Consensus 256 ~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~ 334 (875)
++|.+||.|++.+..+....+ +++.+ ....++++|+.+||. +..++.
T Consensus 111 l~p~~tv~~~i~~~l~~~~~~--------~~~~~------------------------~~~~~~~~l~~vgl~~~~~~~~ 158 (331)
T PRK15079 111 LNPRMTIGEIIAEPLRTYHPK--------LSRQE------------------------VKDRVKAMMLKVGLLPNLINRY 158 (331)
T ss_pred cCCCCCHHHHHHHHHHHhccC--------CCHHH------------------------HHHHHHHHHHHcCCChHHhcCC
Confidence 789999999998865432110 00000 112356789999994 455655
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeE
Q 002833 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (875)
Q Consensus 335 vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~v 414 (875)
++ .|||||||||+||+||+.+|++|++||||+|||..++.++++.|+++.+..+.|+|+++|+ ...+.+++|+|
T Consensus 159 p~-----~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHd-l~~~~~~~dri 232 (331)
T PRK15079 159 PH-----EFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHD-LAVVKHISDRV 232 (331)
T ss_pred cc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC-HHHHHHhCCEE
Confidence 54 5999999999999999999999999999999999999999999999987668888887665 45788899999
Q ss_pred EEEeCCeEEEecChhhHH
Q 002833 415 ILLSEGQIVYQGPRDNVL 432 (875)
Q Consensus 415 ilL~~G~iv~~Gp~~~~~ 432 (875)
++|++|++++.|+.+++.
T Consensus 233 ~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 233 LVMYLGHAVELGTYDEVY 250 (331)
T ss_pred EEEECCEEEEEcCHHHHH
Confidence 999999999999998774
No 86
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-38 Score=343.83 Aligned_cols=218 Identities=28% Similarity=0.374 Sum_probs=178.3
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCC--C---ccCceEEEEecCCC-CC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE--F---VPQRTCAYISQHDL-HH 257 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~--~---~~~~~~~yv~Q~d~-~~ 257 (875)
+.+|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.. . ..++.++|++|++. .+
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 95 (283)
T PRK13636 19 THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQL 95 (283)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCEECCCCcchHHHHHhhEEEEecCcchhh
Confidence 46999999999999999999999999999999999999986 9999999998741 1 12467999999863 34
Q ss_pred CCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccC
Q 002833 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (875)
Q Consensus 258 ~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (875)
...||+||+.+.....+.. ..+ ....++++++.+||.+..++.+++
T Consensus 96 ~~~tv~e~l~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~gL~~~~~~~~~~ 141 (283)
T PRK13636 96 FSASVYQDVSFGAVNLKLP----------EDE------------------------VRKRVDNALKRTGIEHLKDKPTHC 141 (283)
T ss_pred ccccHHHHHHhHHHHcCCC----------HHH------------------------HHHHHHHHHHHCCChhhhhCCccc
Confidence 5679999998864322210 000 112357789999999888777664
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEE
Q 002833 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (875)
Q Consensus 338 ~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL 417 (875)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|+. +++.++||++++|
T Consensus 142 -----LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~-~~~~~~~dri~~l 215 (283)
T PRK13636 142 -----LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDI-DIVPLYCDNVFVM 215 (283)
T ss_pred -----CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999999875588999987665 4677899999999
Q ss_pred eCCeEEEecChhhHHH---HHHHcCCCCCC
Q 002833 418 SEGQIVYQGPRDNVLE---FFEHMGFKCPE 444 (875)
Q Consensus 418 ~~G~iv~~Gp~~~~~~---~F~~~Gf~~p~ 444 (875)
++|++++.|+.+++.. .+...|.++|.
T Consensus 216 ~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 245 (283)
T PRK13636 216 KEGRVILQGNPKEVFAEKEMLRKVNLRLPR 245 (283)
T ss_pred ECCEEEEeCCHHHHhcCHHHHHHcCCCCCc
Confidence 9999999999988653 33445555443
No 87
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=3.2e-38 Score=357.15 Aligned_cols=209 Identities=24% Similarity=0.383 Sum_probs=177.0
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCC
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGE 259 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~ 259 (875)
++++|+|+|+.|++||+++|+||||||||||||+|+|+++|. +|+|.++|+++..... ++.++|++|+..+++.
T Consensus 15 ~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~---sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~ 91 (402)
T PRK09536 15 DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSARAASRRVASVPQDTSLSFE 91 (402)
T ss_pred CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCC
Confidence 357999999999999999999999999999999999999986 9999999998865432 4679999999999899
Q ss_pred CCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCcc
Q 002833 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (875)
Q Consensus 260 lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (875)
+||+||+.++...+... .... ..+....++++++.+||.+..++.+.
T Consensus 92 ~tv~e~v~~~~~~~~~~-----------------~~~~-------------~~~~~~~v~~~le~vgl~~~~~~~~~--- 138 (402)
T PRK09536 92 FDVRQVVEMGRTPHRSR-----------------FDTW-------------TETDRAAVERAMERTGVAQFADRPVT--- 138 (402)
T ss_pred CCHHHHHHhccchhccc-----------------ccCC-------------CHHHHHHHHHHHHHcCCchhhcCChh---
Confidence 99999998864211000 0000 00112346789999999988887765
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeC
Q 002833 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (875)
Q Consensus 340 ~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~ 419 (875)
.|||||||||.||++|+.+|++|+|||||+|||+.++.++.+.|+++++ .+.|+|+++|+ .+++.++||++++|++
T Consensus 139 --~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g~TIIivsHd-l~~~~~~adrii~l~~ 214 (402)
T PRK09536 139 --SLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-DGKTAVAAIHD-LDLAARYCDELVLLAD 214 (402)
T ss_pred --hCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEECC-HHHHHHhCCEEEEEEC
Confidence 4999999999999999999999999999999999999999999999986 58898888765 4588899999999999
Q ss_pred CeEEEecChhhH
Q 002833 420 GQIVYQGPRDNV 431 (875)
Q Consensus 420 G~iv~~Gp~~~~ 431 (875)
|++++.|+++++
T Consensus 215 G~iv~~G~~~ev 226 (402)
T PRK09536 215 GRVRAAGPPADV 226 (402)
T ss_pred CEEEEecCHHHH
Confidence 999999999875
No 88
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=5.1e-38 Score=335.84 Aligned_cols=204 Identities=23% Similarity=0.315 Sum_probs=171.9
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCC-----------ccCceEEEEec
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-----------VPQRTCAYISQ 252 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~-----------~~~~~~~yv~Q 252 (875)
+.+|+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.++|++|
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q 92 (250)
T PRK11264 16 QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE---AGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQ 92 (250)
T ss_pred eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccccccchhhHHHHhhhhEEEEec
Confidence 46999999999999999999999999999999999999886 99999999987532 11357999999
Q ss_pred CCCCCCCCCHHHHHHHhhhh-cCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccc
Q 002833 253 HDLHHGEMTVRETLDFSGRC-LGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICA 331 (875)
Q Consensus 253 ~d~~~~~lTV~EtL~f~a~~-~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~ 331 (875)
++.+++.+||+||+.++... ++.. .. +....+..+++.+||.+..
T Consensus 93 ~~~~~~~~tv~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gl~~~~ 138 (250)
T PRK11264 93 NFNLFPHRTVLENIIEGPVIVKGEP----------KE------------------------EATARARELLAKVGLAGKE 138 (250)
T ss_pred CcccCCCCCHHHHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCCcchh
Confidence 99899999999999875321 1100 00 0112346688899998877
Q ss_pred cccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhc
Q 002833 332 DTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF 411 (875)
Q Consensus 332 dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lf 411 (875)
|+.++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.++|
T Consensus 139 ~~~~~-----~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~tH~~-~~~~~~~ 211 (250)
T PRK11264 139 TSYPR-----RLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ-EKRTMVIVTHEM-SFARDVA 211 (250)
T ss_pred hCChh-----hCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHHhc
Confidence 77665 4999999999999999999999999999999999999999999999976 478888887665 4788899
Q ss_pred CeEEEEeCCeEEEecChhhH
Q 002833 412 DDIILLSEGQIVYQGPRDNV 431 (875)
Q Consensus 412 D~vilL~~G~iv~~Gp~~~~ 431 (875)
|++++|++|++++.|+++++
T Consensus 212 d~i~~l~~G~i~~~~~~~~~ 231 (250)
T PRK11264 212 DRAIFMDQGRIVEQGPAKAL 231 (250)
T ss_pred CEEEEEECCEEEEeCCHHHH
Confidence 99999999999999998776
No 89
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=2.9e-38 Score=329.63 Aligned_cols=195 Identities=25% Similarity=0.360 Sum_probs=165.3
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc------cCceEEEEecCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLHH 257 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~------~~~~~~yv~Q~d~~~ 257 (875)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 90 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLL 90 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHHHheEEEecCchhc
Confidence 46999999999999999999999999999999999999886 999999999876432 235699999999999
Q ss_pred CCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccC
Q 002833 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (875)
Q Consensus 258 ~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (875)
+.+||+||+.+.....+.. .. +....++++++.+||++..++.++
T Consensus 91 ~~~t~~~~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~- 135 (214)
T cd03292 91 PDRNVYENVAFALEVTGVP----------PR------------------------EIRKRVPAALELVGLSHKHRALPA- 135 (214)
T ss_pred cCCcHHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCCHHHhhCChh-
Confidence 9999999998875432210 00 011235678899999888777765
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEE
Q 002833 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (875)
Q Consensus 338 ~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL 417 (875)
.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ .+.|+|++.|++ .++.++||++++|
T Consensus 136 ----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tiiivtH~~-~~~~~~~d~i~~l 209 (214)
T cd03292 136 ----ELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK-AGTTVVVATHAK-ELVDTTRHRVIAL 209 (214)
T ss_pred ----hcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 4999999999999999999999999999999999999999999999875 478888887765 4677889999999
Q ss_pred eCCeE
Q 002833 418 SEGQI 422 (875)
Q Consensus 418 ~~G~i 422 (875)
++|++
T Consensus 210 ~~G~~ 214 (214)
T cd03292 210 ERGKL 214 (214)
T ss_pred eCCcC
Confidence 99974
No 90
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.3e-38 Score=339.52 Aligned_cols=206 Identities=25% Similarity=0.366 Sum_probs=173.5
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc---cCceEEEEecCCC-CCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDL-HHGE 259 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~~~yv~Q~d~-~~~~ 259 (875)
+.+|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++. .+..
T Consensus 17 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 93 (277)
T PRK13652 17 KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFS 93 (277)
T ss_pred CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheEEEecCccccccc
Confidence 45999999999999999999999999999999999999986 999999999875432 1356899999963 3446
Q ss_pred CCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCcc
Q 002833 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (875)
Q Consensus 260 lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (875)
.||.||+.+.....+.. .. +....++++++.+||.+..++.++
T Consensus 94 ~tv~~~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~--- 136 (277)
T PRK13652 94 PTVEQDIAFGPINLGLD----------EE------------------------TVAHRVSSALHMLGLEELRDRVPH--- 136 (277)
T ss_pred ccHHHHHHhHHHHcCCC----------HH------------------------HHHHHHHHHHHHCCChhHhcCCcc---
Confidence 89999998765432110 00 011235678999999988887776
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeC
Q 002833 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (875)
Q Consensus 340 ~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~ 419 (875)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++.++||+|++|++
T Consensus 137 --~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~ 213 (277)
T PRK13652 137 --HLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDK 213 (277)
T ss_pred --cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC
Confidence 499999999999999999999999999999999999999999999998755789988877654 77889999999999
Q ss_pred CeEEEecChhhHH
Q 002833 420 GQIVYQGPRDNVL 432 (875)
Q Consensus 420 G~iv~~Gp~~~~~ 432 (875)
|++++.|+++++.
T Consensus 214 G~i~~~g~~~~~~ 226 (277)
T PRK13652 214 GRIVAYGTVEEIF 226 (277)
T ss_pred CeEEEECCHHHHh
Confidence 9999999998874
No 91
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=3.3e-38 Score=329.41 Aligned_cols=194 Identities=28% Similarity=0.389 Sum_probs=164.7
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc------cCceEEEEecCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLHH 257 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~------~~~~~~yv~Q~d~~~ 257 (875)
+.+|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (214)
T TIGR02673 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLL 91 (214)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEecChhhc
Confidence 46999999999999999999999999999999999999886 999999999876532 135799999999899
Q ss_pred CCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccC
Q 002833 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (875)
Q Consensus 258 ~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (875)
+.+||.||+.+.....+... . .....++++++.+||.+..++.+.
T Consensus 92 ~~~tv~~~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~~~- 136 (214)
T TIGR02673 92 PDRTVYENVALPLEVRGKKE----------R------------------------EIQRRVGAALRQVGLEHKADAFPE- 136 (214)
T ss_pred cCCcHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCChhhhhCChh-
Confidence 99999999988754322100 0 001235678899999877777765
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEE
Q 002833 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (875)
Q Consensus 338 ~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL 417 (875)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .++|+|++.|++ .++.++||++++|
T Consensus 137 ----~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~-~~~~~~~d~i~~l 210 (214)
T TIGR02673 137 ----QLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK-RGTTVIVATHDL-SLVDRVAHRVIIL 210 (214)
T ss_pred ----hCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhcCEEEEe
Confidence 4999999999999999999999999999999999999999999999875 478998887765 4788899999999
Q ss_pred eCCe
Q 002833 418 SEGQ 421 (875)
Q Consensus 418 ~~G~ 421 (875)
++|+
T Consensus 211 ~~G~ 214 (214)
T TIGR02673 211 DDGR 214 (214)
T ss_pred cCCC
Confidence 9985
No 92
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-38 Score=346.89 Aligned_cols=219 Identities=21% Similarity=0.364 Sum_probs=177.6
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCC-------------------ccC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-------------------VPQ 244 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~-------------------~~~ 244 (875)
+.+|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|+++|.++.+. ..+
T Consensus 39 ~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (320)
T PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELR 115 (320)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEcccccccccccccccccccchHHHHH
Confidence 45999999999999999999999999999999999999986 99999999887532 114
Q ss_pred ceEEEEecCC--CCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHH
Q 002833 245 RTCAYISQHD--LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 322 (875)
Q Consensus 245 ~~~~yv~Q~d--~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL 322 (875)
+.++||+|++ .+++ .||+||+.|+....+.. .. +....+++++
T Consensus 116 ~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~----------~~------------------------~~~~~~~~~l 160 (320)
T PRK13631 116 RRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVK----------KS------------------------EAKKLAKFYL 160 (320)
T ss_pred hcEEEEEECchhcccc-chHHHHHHhhHHhcCCC----------HH------------------------HHHHHHHHHH
Confidence 6799999986 3554 59999998864322110 00 0112356788
Q ss_pred HHhCCC-ccccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeec
Q 002833 323 KILGLD-ICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL 401 (875)
Q Consensus 323 ~~lgL~-~~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~ 401 (875)
+.+||+ +..+..+. .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|++.|
T Consensus 161 ~~~gL~~~~~~~~~~-----~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TiiivtH 234 (320)
T PRK13631 161 NKMGLDDSYLERSPF-----GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-NNKTVFVITH 234 (320)
T ss_pred HHcCCChhHhcCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEec
Confidence 999996 45665554 5999999999999999999999999999999999999999999999975 4889988877
Q ss_pred CCchhHHhhcCeEEEEeCCeEEEecChhhHH---HHHHHcCCCCCCCCC
Q 002833 402 QPAPETYDLFDDIILLSEGQIVYQGPRDNVL---EFFEHMGFKCPERKG 447 (875)
Q Consensus 402 q~~~ei~~lfD~vilL~~G~iv~~Gp~~~~~---~~F~~~Gf~~p~~~~ 447 (875)
++ .++.++||+|++|++|++++.|+++++. +.++..|+.+|....
T Consensus 235 d~-~~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~ 282 (320)
T PRK13631 235 TM-EHVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVPRVIQ 282 (320)
T ss_pred CH-HHHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCChHHH
Confidence 65 4677899999999999999999998764 345566777665433
No 93
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=5.5e-38 Score=333.70 Aligned_cols=205 Identities=20% Similarity=0.332 Sum_probs=173.0
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc-----cCceEEEEecCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-----PQRTCAYISQHDLHHG 258 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~-----~~~~~~yv~Q~d~~~~ 258 (875)
+.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++..++
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 90 (240)
T PRK09493 14 TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT---SGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFP 90 (240)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCChhHHHHhhceEEEecccccCC
Confidence 46999999999999999999999999999999999999886 999999999876421 1456999999998999
Q ss_pred CCCHHHHHHHhhh-hcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccC
Q 002833 259 EMTVRETLDFSGR-CLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (875)
Q Consensus 259 ~lTV~EtL~f~a~-~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (875)
.+||+||+.++.. .++.. +. +....++++++.+||++..+..+.
T Consensus 91 ~~tv~~~l~~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gl~~~~~~~~~- 135 (240)
T PRK09493 91 HLTALENVMFGPLRVRGAS----------KE------------------------EAEKQARELLAKVGLAERAHHYPS- 135 (240)
T ss_pred CCcHHHHHHhHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCChHHHhcChh-
Confidence 9999999987632 11110 00 011235678899999877777665
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEE
Q 002833 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (875)
Q Consensus 338 ~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL 417 (875)
.|||||||||+||++|+.+|++++|||||+|||..++..+.+.|+++++ .++|+|++.|++. ++.++||++++|
T Consensus 136 ----~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l 209 (240)
T PRK09493 136 ----ELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE-EGMTMVIVTHEIG-FAEKVASRLIFI 209 (240)
T ss_pred ----hcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 4999999999999999999999999999999999999999999999875 4789888877654 677899999999
Q ss_pred eCCeEEEecChhhHH
Q 002833 418 SEGQIVYQGPRDNVL 432 (875)
Q Consensus 418 ~~G~iv~~Gp~~~~~ 432 (875)
++|++++.|+.+++.
T Consensus 210 ~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 210 DKGRIAEDGDPQVLI 224 (240)
T ss_pred ECCEEEeeCCHHHHh
Confidence 999999999988763
No 94
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=5.7e-38 Score=352.55 Aligned_cols=208 Identities=23% Similarity=0.299 Sum_probs=178.4
Q ss_pred cccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCE----eCCCCcc-------CceEEEE
Q 002833 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGH----ELNEFVP-------QRTCAYI 250 (875)
Q Consensus 182 ~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~----~~~~~~~-------~~~~~yv 250 (875)
+...+|+|+|++|++||+++|+|||||||||||++|+|+++|+ +|+|+++|+ ++..... ++.++|+
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~---~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~v 111 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVS---RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMV 111 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEecccccccCCHHHHHHHhcCCEEEE
Confidence 4567999999999999999999999999999999999999996 999999997 3332211 2579999
Q ss_pred ecCCCCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCcc
Q 002833 251 SQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDIC 330 (875)
Q Consensus 251 ~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~ 330 (875)
+|+..++|.+||+||+.|+...++... .+ ....++++++.+||.+.
T Consensus 112 fQ~~~l~p~~Tv~eNi~~~~~~~g~~~----------~~------------------------~~~~a~e~le~vgL~~~ 157 (382)
T TIGR03415 112 FQKFALMPWLTVEENVAFGLEMQGMPE----------AE------------------------RRKRVDEQLELVGLAQW 157 (382)
T ss_pred ECCCcCCCCCcHHHHHHHHHHhcCCCH----------HH------------------------HHHHHHHHHHHcCCchh
Confidence 999999999999999999865433210 00 11235678999999988
Q ss_pred ccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhh
Q 002833 331 ADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL 410 (875)
Q Consensus 331 ~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~l 410 (875)
.|..+++ |||||||||.||++|+.+|++|||||||+|||+.++.++.+.|+++.+..++|+|+++|+. .++.++
T Consensus 158 ~~~~~~~-----LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl-~e~~~l 231 (382)
T TIGR03415 158 ADKKPGE-----LSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDL-DEALKI 231 (382)
T ss_pred hcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHh
Confidence 8887765 9999999999999999999999999999999999999999999999876688999987664 578899
Q ss_pred cCeEEEEeCCeEEEecChhhHH
Q 002833 411 FDDIILLSEGQIVYQGPRDNVL 432 (875)
Q Consensus 411 fD~vilL~~G~iv~~Gp~~~~~ 432 (875)
+|+|++|++|+++..|+++++.
T Consensus 232 ~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 232 GNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred CCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999998874
No 95
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.8e-38 Score=351.59 Aligned_cols=229 Identities=24% Similarity=0.367 Sum_probs=192.2
Q ss_pred cCCCCCceEEEEeeeeEEEEeecccccccchhHHHHHHHHHHhhhccccCCcccccccccceeEEEeCCeEEEEEcCCCC
Q 002833 129 VGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGA 208 (875)
Q Consensus 129 ~g~~~p~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~IL~~vs~~i~pGe~~~llGpnGS 208 (875)
..+..+.-.++|+|+++.. ..+++||++|||+|++||-+||+|+|||
T Consensus 343 ~~i~~~~~~I~F~dV~f~y---------------------------------~~k~~iL~gvsf~I~kGekVaIvG~nGs 389 (591)
T KOG0057|consen 343 LPIELFGGSIEFDDVHFSY---------------------------------GPKRKVLKGVSFTIPKGEKVAIVGSNGS 389 (591)
T ss_pred CCcccCCCcEEEEeeEEEe---------------------------------CCCCceecceeEEecCCCEEEEECCCCC
Confidence 3556666779999988753 1235599999999999999999999999
Q ss_pred CHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCCCHHHHHHHhhhhcCCcchhHHHHHH
Q 002833 209 GKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAEL 285 (875)
Q Consensus 209 GKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l 285 (875)
||||+||+|-++++ + +|+|.+||+++++... ++.+||||||..+|.+ ||.+|+.|+.
T Consensus 390 GKSTilr~LlrF~d-~---sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn--------------- 449 (591)
T KOG0057|consen 390 GKSTILRLLLRFFD-Y---SGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFND-TILYNIKYGN--------------- 449 (591)
T ss_pred CHHHHHHHHHHHhc-c---CCcEEECCeeHhhhChHHhhhheeEeCCcccccch-hHHHHhhcCC---------------
Confidence 99999999999998 4 9999999999987654 6889999998777765 9999999973
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEE
Q 002833 286 SRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLY 365 (875)
Q Consensus 286 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLl 365 (875)
|+...+++.+++...+.++- +..|++.++|.||+++. -|||||||||++||+++.+|+|++
T Consensus 450 ----------~sas~eeV~e~~k~a~~hd~--------i~~l~~GY~T~VGerG~-~LSGGekQrvslaRa~lKda~Il~ 510 (591)
T KOG0057|consen 450 ----------PSASDEEVVEACKRAGLHDV--------ISRLPDGYQTLVGERGL-MLSGGEKQRVSLARAFLKDAPILL 510 (591)
T ss_pred ----------CCcCHHHHHHHHHHcCcHHH--------HHhccccchhhHhhccc-ccccchHHHHHHHHHHhcCCCeEE
Confidence 23344455555554443331 44688999999998554 499999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCeEEEecChhhHHH
Q 002833 366 MDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLE 433 (875)
Q Consensus 366 LDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~iv~~Gp~~~~~~ 433 (875)
+|||||.||+.|..++++.++... .++|+|+..|.. .+..-||+|++|++|++...|++++++.
T Consensus 511 ~DEaTS~LD~~TE~~i~~~i~~~~--~~rTvI~IvH~l--~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 511 LDEATSALDSETEREILDMIMDVM--SGRTVIMIVHRL--DLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred ecCcccccchhhHHHHHHHHHHhc--CCCeEEEEEecc--hhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 999999999999999999999954 489999988865 4778899999999999999999999875
No 96
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-38 Score=345.44 Aligned_cols=217 Identities=23% Similarity=0.354 Sum_probs=175.6
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCC-----------------------
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE----------------------- 240 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~----------------------- 240 (875)
..+|+|||+.|++||+++|+||||||||||+++|+|.++|+ +|+|+++|.+...
T Consensus 20 ~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (305)
T PRK13651 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKK 96 (305)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceecccccccccccccccccccccccccc
Confidence 35999999999999999999999999999999999999986 8999999876421
Q ss_pred ----CccCceEEEEecCC-CCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhh
Q 002833 241 ----FVPQRTCAYISQHD-LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETS 315 (875)
Q Consensus 241 ----~~~~~~~~yv~Q~d-~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (875)
...++.++||+|++ ..+...||+||+.|+....+.. +. +..
T Consensus 97 ~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~----------~~------------------------~~~ 142 (305)
T PRK13651 97 IKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVS----------KE------------------------EAK 142 (305)
T ss_pred cchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCC----------HH------------------------HHH
Confidence 01145799999985 3455679999999875433211 00 011
Q ss_pred hHHHHHHHHhCCC-ccccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCc
Q 002833 316 LVTDYVLKILGLD-ICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDV 394 (875)
Q Consensus 316 ~~~~~iL~~lgL~-~~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~ 394 (875)
..++++++.+||. +..+..+. .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|.
T Consensus 143 ~~~~~~l~~~gL~~~~~~~~~~-----~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~ 216 (305)
T PRK13651 143 KRAAKYIELVGLDESYLQRSPF-----ELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-QGK 216 (305)
T ss_pred HHHHHHHHHcCCChhhhhCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCC
Confidence 2356789999996 66776665 4999999999999999999999999999999999999999999999975 588
Q ss_pred EEEEeecCCchhHHhhcCeEEEEeCCeEEEecChhhHH---HHHHHcCCCCCC
Q 002833 395 TMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVL---EFFEHMGFKCPE 444 (875)
Q Consensus 395 tviisi~q~~~ei~~lfD~vilL~~G~iv~~Gp~~~~~---~~F~~~Gf~~p~ 444 (875)
|+|++.|+ .+++.++||+|++|++|++++.|+++++. +.+...|...|.
T Consensus 217 tiiivtHd-~~~~~~~adrv~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~ 268 (305)
T PRK13651 217 TIILVTHD-LDNVLEWTKRTIFFKDGKIIKDGDTYDILSDNKFLIENNMEPPK 268 (305)
T ss_pred EEEEEeeC-HHHHHHhCCEEEEEECCEEEEECCHHHHhcCHHHHHHCCCCCCh
Confidence 98888765 45788999999999999999999998864 233444555444
No 97
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.8e-38 Score=341.23 Aligned_cols=205 Identities=20% Similarity=0.297 Sum_probs=171.3
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc-------cCceEEEEecCC--
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-------PQRTCAYISQHD-- 254 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~-------~~~~~~yv~Q~d-- 254 (875)
+++|+|||++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPES 96 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhheEEEecChHh
Confidence 46999999999999999999999999999999999999987 999999999875421 245799999985
Q ss_pred CCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCC-ccccc
Q 002833 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADT 333 (875)
Q Consensus 255 ~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt 333 (875)
.+++ .||.||+.|+....+.. .. +....++++++.+||. +..++
T Consensus 97 ~l~~-~tv~e~i~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gL~~~~~~~ 141 (286)
T PRK13646 97 QLFE-DTVEREIIFGPKNFKMN----------LD------------------------EVKNYAHRLLMDLGFSRDVMSQ 141 (286)
T ss_pred ccch-hhHHHHHHhhHHHcCCC----------HH------------------------HHHHHHHHHHHHcCCChhhhhC
Confidence 3454 59999999864322110 00 0112356788999996 66776
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCe
Q 002833 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (875)
Q Consensus 334 ~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~ 413 (875)
.+. .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|+++|+.. ++.++||+
T Consensus 142 ~~~-----~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dr 215 (286)
T PRK13646 142 SPF-----QMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADE 215 (286)
T ss_pred Ccc-----cCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCE
Confidence 655 499999999999999999999999999999999999999999999998656889999877654 67889999
Q ss_pred EEEEeCCeEEEecChhhHH
Q 002833 414 IILLSEGQIVYQGPRDNVL 432 (875)
Q Consensus 414 vilL~~G~iv~~Gp~~~~~ 432 (875)
|++|++|++++.|+++++.
T Consensus 216 i~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 216 VIVMKEGSIVSQTSPKELF 234 (286)
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999988764
No 98
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.1e-38 Score=338.69 Aligned_cols=204 Identities=25% Similarity=0.359 Sum_probs=172.2
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc----cCceEEEEecCCC-CCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV----PQRTCAYISQHDL-HHG 258 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~----~~~~~~yv~Q~d~-~~~ 258 (875)
+.+|+|||++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .+.
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (274)
T PRK13644 15 TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ---KGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFV 91 (274)
T ss_pred CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEECCccccHHHHHhheEEEEEChhhhcc
Confidence 45999999999999999999999999999999999999986 999999999886432 1356999999965 466
Q ss_pred CCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCc
Q 002833 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (875)
Q Consensus 259 ~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~ 338 (875)
.+||.||+.|.....+.. +. +....++++++.+||.+..++.+++
T Consensus 92 ~~tv~enl~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gl~~~~~~~~~~- 136 (274)
T PRK13644 92 GRTVEEDLAFGPENLCLP----------PI------------------------EIRKRVDRALAEIGLEKYRHRSPKT- 136 (274)
T ss_pred cchHHHHHHhhHHHcCCC----------HH------------------------HHHHHHHHHHHHCCCHHHhcCCccc-
Confidence 789999998865432210 00 0112356788999999888877764
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEe
Q 002833 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (875)
Q Consensus 339 ~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~ 418 (875)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|.|+|++.|++. ++ ..||++++|+
T Consensus 137 ----LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~~tH~~~-~~-~~~d~v~~l~ 209 (274)
T PRK13644 137 ----LSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE-KGKTIVYITHNLE-EL-HDADRIIVMD 209 (274)
T ss_pred ----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHH-HH-hhCCEEEEEE
Confidence 999999999999999999999999999999999999999999999975 4889999887765 55 5699999999
Q ss_pred CCeEEEecChhhHH
Q 002833 419 EGQIVYQGPRDNVL 432 (875)
Q Consensus 419 ~G~iv~~Gp~~~~~ 432 (875)
+|++++.|+.+++.
T Consensus 210 ~G~i~~~g~~~~~~ 223 (274)
T PRK13644 210 RGKIVLEGEPENVL 223 (274)
T ss_pred CCEEEEECCHHHHh
Confidence 99999999988763
No 99
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=5.9e-38 Score=329.09 Aligned_cols=196 Identities=21% Similarity=0.342 Sum_probs=164.9
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc-------CceEEEEecCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHDLH 256 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~-------~~~~~yv~Q~d~~ 256 (875)
+++|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 94 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHL 94 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcCHhHHHHHHHhcEEEEeccccc
Confidence 46999999999999999999999999999999999999986 9999999998765322 2469999999988
Q ss_pred CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCcccccccc
Q 002833 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (875)
Q Consensus 257 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (875)
++.+||+||+.+........ +. +....+.++++.+||++..+..++
T Consensus 95 ~~~~tv~~~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~ 140 (221)
T TIGR02211 95 LPDFTALENVAMPLLIGKKS----------VK------------------------EAKERAYEMLEKVGLEHRINHRPS 140 (221)
T ss_pred CCCCcHHHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCChhhhhCChh
Confidence 99999999998864322110 00 001234568899999887777665
Q ss_pred CccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEE
Q 002833 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (875)
Q Consensus 337 ~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vil 416 (875)
.|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++++..+.|+|++.|++. ++ +.+|++++
T Consensus 141 -----~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~ 213 (221)
T TIGR02211 141 -----ELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLE 213 (221)
T ss_pred -----hCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEE
Confidence 499999999999999999999999999999999999999999999998655789999888764 45 45899999
Q ss_pred EeCCeEE
Q 002833 417 LSEGQIV 423 (875)
Q Consensus 417 L~~G~iv 423 (875)
|++|+++
T Consensus 214 l~~G~i~ 220 (221)
T TIGR02211 214 MKDGQLF 220 (221)
T ss_pred EeCCEec
Confidence 9999985
No 100
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=9.4e-38 Score=328.81 Aligned_cols=201 Identities=27% Similarity=0.353 Sum_probs=165.5
Q ss_pred ccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc------cCceEEEEecCC--CC
Q 002833 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHD--LH 256 (875)
Q Consensus 185 ~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~------~~~~~~yv~Q~d--~~ 256 (875)
.+|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++ .+
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSL 95 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccchhhHHHhhccEEEEecCchhhc
Confidence 6999999999999999999999999999999999999886 999999999876532 245799999997 46
Q ss_pred CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCC-ccccccc
Q 002833 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMV 335 (875)
Q Consensus 257 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~v 335 (875)
++.+||+||+.+.....+.... .+ . .....+++++.+||. +..+..+
T Consensus 96 ~~~~tv~~nl~~~~~~~~~~~~---------~~------------~-----------~~~~~~~~l~~~~l~~~~~~~~~ 143 (228)
T cd03257 96 NPRMTIGEQIAEPLRIHGKLSK---------KE------------A-----------RKEAVLLLLVGVGLPEEVLNRYP 143 (228)
T ss_pred CCcCCHHHHHHHHHHhccCCcH---------HH------------H-----------HHHHHHHHHHHCCCChhHhhCCc
Confidence 6789999999886543221000 00 0 011124578889995 5666666
Q ss_pred cCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEE
Q 002833 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (875)
Q Consensus 336 g~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vi 415 (875)
+ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++.++||+++
T Consensus 144 ~-----~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~ 217 (228)
T cd03257 144 H-----ELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVA 217 (228)
T ss_pred h-----hcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEE
Confidence 5 499999999999999999999999999999999999999999999998755789999887764 6777999999
Q ss_pred EEeCCeEEEec
Q 002833 416 LLSEGQIVYQG 426 (875)
Q Consensus 416 lL~~G~iv~~G 426 (875)
+|++|+++..|
T Consensus 218 ~l~~G~i~~~g 228 (228)
T cd03257 218 VMYAGKIVEEG 228 (228)
T ss_pred EEeCCEEEecC
Confidence 99999998765
No 101
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.2e-38 Score=335.61 Aligned_cols=201 Identities=24% Similarity=0.326 Sum_probs=170.2
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHH
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (875)
+.+|+|+|+.|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++... .+.++|++|+..+++.+||.
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~--~~~~~~v~q~~~~~~~~tv~ 88 (255)
T PRK11248 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGP--GAERGVVFQNEGLLPWRNVQ 88 (255)
T ss_pred eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCC--CCcEEEEeCCCccCCCCcHH
Confidence 46999999999999999999999999999999999999986 99999999987642 34589999999889999999
Q ss_pred HHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCC
Q 002833 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (875)
Q Consensus 264 EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (875)
||+.+.....+.. .. +....++++++.+||.+..++.++ .|
T Consensus 89 e~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gl~~~~~~~~~-----~L 129 (255)
T PRK11248 89 DNVAFGLQLAGVE----------KM------------------------QRLEIAHQMLKKVGLEGAEKRYIW-----QL 129 (255)
T ss_pred HHHHhHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCChhHhhCChh-----hC
Confidence 9998764322210 00 001235678899999887777665 49
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEe--CCe
Q 002833 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS--EGQ 421 (875)
Q Consensus 344 SGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~--~G~ 421 (875)
||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.++||++++|+ +|+
T Consensus 130 SgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l~~~~G~ 208 (255)
T PRK11248 130 SGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDI-EEAVFMATELVLLSPGPGR 208 (255)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCCcE
Confidence 999999999999999999999999999999999999999999998655578988887665 47788999999998 599
Q ss_pred EEEecChh
Q 002833 422 IVYQGPRD 429 (875)
Q Consensus 422 iv~~Gp~~ 429 (875)
++..++.+
T Consensus 209 i~~~~~~~ 216 (255)
T PRK11248 209 VVERLPLN 216 (255)
T ss_pred EEEEecCC
Confidence 99988754
No 102
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=7.9e-38 Score=330.27 Aligned_cols=202 Identities=25% Similarity=0.357 Sum_probs=169.7
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc----CceEEEEecCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (875)
+++|+|+|+.+++||+++|+|||||||||||++|+|.++|. +|+|.++|.++..... ++.++|++|+..+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (230)
T TIGR03410 13 SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPR 89 (230)
T ss_pred eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCC
Confidence 46999999999999999999999999999999999999986 9999999998764322 3569999999999999
Q ss_pred CCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhC-CCccccccccCc
Q 002833 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILG-LDICADTMVGDE 338 (875)
Q Consensus 260 lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lg-L~~~~dt~vg~~ 338 (875)
+||+||+.++....+.. . ....+.+++.++ +.+..++.++
T Consensus 90 ~tv~~~l~~~~~~~~~~----------~---------------------------~~~~~~~l~~~~~l~~~~~~~~~-- 130 (230)
T TIGR03410 90 LTVEENLLTGLAALPRR----------S---------------------------RKIPDEIYELFPVLKEMLGRRGG-- 130 (230)
T ss_pred CcHHHHHHHHHHhcCcc----------h---------------------------HHHHHHHHHHHHhHHHHhhCChh--
Confidence 99999998864322110 0 011244566665 5555566555
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEe
Q 002833 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (875)
Q Consensus 339 ~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~ 418 (875)
.|||||||||+||++|+.+|++++|||||+|||+.++.++.+.|+++++..+.|+|++.|++ +++.++||+|++|+
T Consensus 131 ---~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~ 206 (230)
T TIGR03410 131 ---DLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYL-DFARELADRYYVME 206 (230)
T ss_pred ---hCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCH-HHHHHhCCEEEEEE
Confidence 59999999999999999999999999999999999999999999999865578998887765 47888999999999
Q ss_pred CCeEEEecChhhH
Q 002833 419 EGQIVYQGPRDNV 431 (875)
Q Consensus 419 ~G~iv~~Gp~~~~ 431 (875)
+|++++.|+.+++
T Consensus 207 ~g~i~~~~~~~~~ 219 (230)
T TIGR03410 207 RGRVVASGAGDEL 219 (230)
T ss_pred CCEEEEECCHHHc
Confidence 9999999998776
No 103
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.5e-38 Score=332.44 Aligned_cols=205 Identities=21% Similarity=0.350 Sum_probs=173.2
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc----CceEEEEecCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (875)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|+++|.++..... ++.++|++|++.+++.
T Consensus 16 ~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (241)
T PRK10895 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRR 92 (241)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHHhCeEEeccCCccccc
Confidence 56999999999999999999999999999999999999886 9999999998765332 3569999999999999
Q ss_pred CCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCcc
Q 002833 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (875)
Q Consensus 260 lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (875)
+||.||+.+..+..... ... +....++++++.+||.+..+..++
T Consensus 93 ~tv~enl~~~~~~~~~~---------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~--- 136 (241)
T PRK10895 93 LSVYDNLMAVLQIRDDL---------SAE------------------------QREDRANELMEEFHIEHLRDSMGQ--- 136 (241)
T ss_pred CcHHHHHhhhhhccccc---------CHH------------------------HHHHHHHHHHHHcCCHHHhhcchh---
Confidence 99999998764321100 000 011235678899999877666655
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeC
Q 002833 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (875)
Q Consensus 340 ~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~ 419 (875)
.|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++++ .+.|+|++.|++ .++.++||++++|++
T Consensus 137 --~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~~-~~~~~~~d~v~~l~~ 212 (241)
T PRK10895 137 --SLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD-SGLGVLITDHNV-RETLAVCERAYIVSQ 212 (241)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEEcCH-HHHHHhcCEEEEEeC
Confidence 5999999999999999999999999999999999999999999999875 488999988765 478889999999999
Q ss_pred CeEEEecChhhH
Q 002833 420 GQIVYQGPRDNV 431 (875)
Q Consensus 420 G~iv~~Gp~~~~ 431 (875)
|++++.|+++++
T Consensus 213 G~i~~~~~~~~~ 224 (241)
T PRK10895 213 GHLIAHGTPTEI 224 (241)
T ss_pred CeEEeeCCHHHH
Confidence 999999998765
No 104
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-37 Score=335.76 Aligned_cols=216 Identities=22% Similarity=0.301 Sum_probs=177.4
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc---cCceEEEEecCCC-CCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDL-HHGE 259 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~~~yv~Q~d~-~~~~ 259 (875)
+.+|+|+|++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.++|++|++. +++.
T Consensus 22 ~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (269)
T PRK13648 22 SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK---SGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVG 98 (269)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheeEEEeChHHhccc
Confidence 35999999999999999999999999999999999999986 999999999875432 2457999999974 6788
Q ss_pred CCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCcc
Q 002833 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (875)
Q Consensus 260 lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (875)
.||.+|+.|.....+... . +....++.+++.+||.+..++.++
T Consensus 99 ~~v~~~~~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~~~--- 141 (269)
T PRK13648 99 SIVKYDVAFGLENHAVPY----------D------------------------EMHRRVSEALKQVDMLERADYEPN--- 141 (269)
T ss_pred ccHHHHHHhhHHhcCCCH----------H------------------------HHHHHHHHHHHHcCCchhhhCCcc---
Confidence 899999988643321100 0 001235668899999887777665
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeC
Q 002833 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (875)
Q Consensus 340 ~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~ 419 (875)
.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++.. +|+|++|++
T Consensus 142 --~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~~-~d~i~~l~~ 217 (269)
T PRK13648 142 --ALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAME-ADHVIVMNK 217 (269)
T ss_pred --cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHhc-CCEEEEEEC
Confidence 599999999999999999999999999999999999999999999997655789999888765 5554 999999999
Q ss_pred CeEEEecChhhHH---HHHHHcCCCCC
Q 002833 420 GQIVYQGPRDNVL---EFFEHMGFKCP 443 (875)
Q Consensus 420 G~iv~~Gp~~~~~---~~F~~~Gf~~p 443 (875)
|++++.|+++++. ..+...|+++|
T Consensus 218 G~i~~~g~~~~~~~~~~~~~~~~~~~~ 244 (269)
T PRK13648 218 GTVYKEGTPTEIFDHAEELTRIGLDLP 244 (269)
T ss_pred CEEEEecCHHHHhcCHHHHHhcCCCCC
Confidence 9999999988763 24444555554
No 105
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-37 Score=336.99 Aligned_cols=216 Identities=27% Similarity=0.391 Sum_probs=175.9
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCC--c---cCceEEEEecCCC-CC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF--V---PQRTCAYISQHDL-HH 257 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~--~---~~~~~~yv~Q~d~-~~ 257 (875)
+.+|+|||++|++||+++|+||||||||||+++|+|.++|. +|+|+++|+++... . .++.++|++|++. .+
T Consensus 15 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (275)
T PRK13639 15 TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQL 91 (275)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEECccccchHHHHHhheEEEeeChhhhh
Confidence 45999999999999999999999999999999999999986 99999999987421 1 1357999999863 34
Q ss_pred CCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccC
Q 002833 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (875)
Q Consensus 258 ~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (875)
..+||.||+.+.....+.. +.+ ....+..+++.+||.+..++.+++
T Consensus 92 ~~~tv~e~i~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~~L~~~~~~~~~~ 137 (275)
T PRK13639 92 FAPTVEEDVAFGPLNLGLS----------KEE------------------------VEKRVKEALKAVGMEGFENKPPHH 137 (275)
T ss_pred ccccHHHHHHHHHHHcCCC----------HHH------------------------HHHHHHHHHHHCCCchhhcCChhh
Confidence 4579999998753221110 000 112356688999999888887764
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEE
Q 002833 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (875)
Q Consensus 338 ~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL 417 (875)
||||||||++||++|+.+|++++|||||+|||+.++.++.+.|+++++ .+.|+|++.|++ .++.++||++++|
T Consensus 138 -----LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~~til~vtH~~-~~~~~~~d~i~~l 210 (275)
T PRK13639 138 -----LSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK-EGITIIISTHDV-DLVPVYADKVYVM 210 (275)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999976 488998887764 4777899999999
Q ss_pred eCCeEEEecChhhHH---HHHHHcCCCCC
Q 002833 418 SEGQIVYQGPRDNVL---EFFEHMGFKCP 443 (875)
Q Consensus 418 ~~G~iv~~Gp~~~~~---~~F~~~Gf~~p 443 (875)
++|++++.|+++++. +..+..|+..|
T Consensus 211 ~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 239 (275)
T PRK13639 211 SDGKIIKEGTPKEVFSDIETIRKANLRLP 239 (275)
T ss_pred ECCEEEEeCCHHHHhcChHHHHhcCCCCC
Confidence 999999999998874 33444555433
No 106
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=9.3e-38 Score=335.35 Aligned_cols=195 Identities=21% Similarity=0.274 Sum_probs=168.7
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHH
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (875)
+.+|+|+|+.|++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++... ++.++|++|++.+++.+||+
T Consensus 25 ~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~--~~~i~~v~q~~~l~~~~tv~ 99 (257)
T PRK11247 25 RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS---AGELLAGTAPLAEA--REDTRLMFQDARLLPWKKVI 99 (257)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEHHHh--hCceEEEecCccCCCCCcHH
Confidence 46999999999999999999999999999999999999986 99999999876432 46799999999999999999
Q ss_pred HHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCC
Q 002833 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (875)
Q Consensus 264 EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (875)
||+.+.... . ....++.+++.+||.+..+..++ .|
T Consensus 100 enl~~~~~~-----------~-----------------------------~~~~~~~~l~~~gl~~~~~~~~~-----~L 134 (257)
T PRK11247 100 DNVGLGLKG-----------Q-----------------------------WRDAALQALAAVGLADRANEWPA-----AL 134 (257)
T ss_pred HHHHhcccc-----------h-----------------------------HHHHHHHHHHHcCChhHhcCChh-----hC
Confidence 999875210 0 00124567889999887777665 49
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCeEE
Q 002833 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIV 423 (875)
Q Consensus 344 SGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~iv 423 (875)
||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++.+..+.|+|++.|++. ++.++||+|++|++|+++
T Consensus 135 SgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~G~i~ 213 (257)
T PRK11247 135 SGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEEGKIG 213 (257)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999997656889988877654 677899999999999999
Q ss_pred EecChh
Q 002833 424 YQGPRD 429 (875)
Q Consensus 424 ~~Gp~~ 429 (875)
++|+.+
T Consensus 214 ~~~~~~ 219 (257)
T PRK11247 214 LDLTVD 219 (257)
T ss_pred eecccc
Confidence 988764
No 107
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-37 Score=339.28 Aligned_cols=217 Identities=24% Similarity=0.337 Sum_probs=177.9
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc----cCceEEEEecCCC-CCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV----PQRTCAYISQHDL-HHG 258 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~----~~~~~~yv~Q~d~-~~~ 258 (875)
+.+|+|||++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .+.
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 99 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS---EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIV 99 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeccccccHHHHhhheEEEecChhhhhc
Confidence 46999999999999999999999999999999999999986 999999999875421 2467999999964 233
Q ss_pred CCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCc
Q 002833 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (875)
Q Consensus 259 ~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~ 338 (875)
..||.|++.|.....+.. .. +....++++++.+||.+..++.+++
T Consensus 100 ~~~v~~~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gL~~~~~~~~~~- 144 (280)
T PRK13633 100 ATIVEEDVAFGPENLGIP----------PE------------------------EIRERVDESLKKVGMYEYRRHAPHL- 144 (280)
T ss_pred cccHHHHHHhhHhhcCCC----------HH------------------------HHHHHHHHHHHHCCCHhHhhCCccc-
Confidence 569999999875432210 00 0112357789999999888888764
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEe
Q 002833 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (875)
Q Consensus 339 ~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~ 418 (875)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++.. ||++++|+
T Consensus 145 ----LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~~~-~d~v~~l~ 218 (280)
T PRK13633 145 ----LSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-EAVE-ADRIIVMD 218 (280)
T ss_pred ----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHhc-CCEEEEEE
Confidence 99999999999999999999999999999999999999999999998656889999888776 4544 99999999
Q ss_pred CCeEEEecChhhHHH---HHHHcCCCCCC
Q 002833 419 EGQIVYQGPRDNVLE---FFEHMGFKCPE 444 (875)
Q Consensus 419 ~G~iv~~Gp~~~~~~---~F~~~Gf~~p~ 444 (875)
+|+++++|+++++.. .+...|+..|.
T Consensus 219 ~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 247 (280)
T PRK13633 219 SGKVVMEGTPKEIFKEVEMMKKIGLDVPQ 247 (280)
T ss_pred CCEEEEecCHHHHhcChHHHHhcCCCCCc
Confidence 999999999988742 23344555443
No 108
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.6e-38 Score=331.58 Aligned_cols=203 Identities=25% Similarity=0.388 Sum_probs=168.8
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc----CceEEEEecCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (875)
+.+|+|+|+.|++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|+..+++.
T Consensus 18 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (237)
T PRK11614 18 IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSR 94 (237)
T ss_pred ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEecCCCCHHHHHHhCEEEeccCcccCCC
Confidence 46999999999999999999999999999999999999986 9999999998765432 3569999999999999
Q ss_pred CCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHh-CCCccccccccCc
Q 002833 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL-GLDICADTMVGDE 338 (875)
Q Consensus 260 lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l-gL~~~~dt~vg~~ 338 (875)
+||.||+.++...... .+ ....++.+++.+ ++.+..++.++
T Consensus 95 ~tv~~~l~~~~~~~~~------------~~------------------------~~~~~~~~l~~~~~l~~~~~~~~~-- 136 (237)
T PRK11614 95 MTVEENLAMGGFFAER------------DQ------------------------FQERIKWVYELFPRLHERRIQRAG-- 136 (237)
T ss_pred CcHHHHHHHhhhccCh------------hH------------------------HHHHHHHHHHHHHHHHHHHhCchh--
Confidence 9999999886321100 00 001134455666 46655555554
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEe
Q 002833 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (875)
Q Consensus 339 ~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~ 418 (875)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.++||++++|+
T Consensus 137 ---~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~ 211 (237)
T PRK11614 137 ---TMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE-QGMTIFLVEQNA-NQALKLADRGYVLE 211 (237)
T ss_pred ---hCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcH-HHHHhhCCEEEEEe
Confidence 5999999999999999999999999999999999999999999999976 488998887665 47889999999999
Q ss_pred CCeEEEecChhhHH
Q 002833 419 EGQIVYQGPRDNVL 432 (875)
Q Consensus 419 ~G~iv~~Gp~~~~~ 432 (875)
+|++++.|+++++.
T Consensus 212 ~G~i~~~~~~~~~~ 225 (237)
T PRK11614 212 NGHVVLEDTGDALL 225 (237)
T ss_pred CCEEEeeCCHHHHh
Confidence 99999999988763
No 109
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-37 Score=334.67 Aligned_cols=206 Identities=31% Similarity=0.474 Sum_probs=172.9
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (875)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (258)
T PRK13548 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPF 91 (258)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCC
Confidence 46999999999999999999999999999999999999886 9999999998754322 35689999998888889
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccC
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (875)
||+||+.+.....+.. .. +....++.+++.+||.+..++.+++
T Consensus 92 tv~e~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~--- 134 (258)
T PRK13548 92 TVEEVVAMGRAPHGLS----------RA------------------------EDDALVAAALAQVDLAHLAGRDYPQ--- 134 (258)
T ss_pred CHHHHHHhhhcccCCC----------cH------------------------HHHHHHHHHHHHcCCHhHhcCCccc---
Confidence 9999998864321100 00 0012346788999998877777764
Q ss_pred CCCCHHHHHHHHHHHHHh------cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeE
Q 002833 341 RGISGGQKKRVTTGEMLV------GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (875)
Q Consensus 341 rgLSGGerkRVsIA~aLv------~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~v 414 (875)
|||||||||+||++|+ .+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.++||+|
T Consensus 135 --LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i 211 (258)
T PRK13548 135 --LSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDL-NLAARYADRI 211 (258)
T ss_pred --CCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhcCEE
Confidence 9999999999999999 599999999999999999999999999999844588988887765 4677899999
Q ss_pred EEEeCCeEEEecChhhHH
Q 002833 415 ILLSEGQIVYQGPRDNVL 432 (875)
Q Consensus 415 ilL~~G~iv~~Gp~~~~~ 432 (875)
++|++|++++.|+++++.
T Consensus 212 ~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 212 VLLHQGRLVADGTPAEVL 229 (258)
T ss_pred EEEECCEEEeeCCHHHHh
Confidence 999999999999987653
No 110
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=1.9e-37 Score=344.06 Aligned_cols=213 Identities=21% Similarity=0.253 Sum_probs=175.2
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc-------CceEEEEecCC--
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHD-- 254 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~-------~~~~~yv~Q~d-- 254 (875)
..+|+|||++|++||+++|+|+||||||||+++|+|+++|+...+|+|.|+|+++..... ++.++||+|++
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 108 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMT 108 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchh
Confidence 469999999999999999999999999999999999998742348999999999865432 24799999997
Q ss_pred CCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCcccccc
Q 002833 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTM 334 (875)
Q Consensus 255 ~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 334 (875)
.+.|.+||.+++.+........ .+.+ ....+.++|+.+||.+..+.
T Consensus 109 ~l~p~~~v~~~i~~~~~~~~~~---------~~~~------------------------~~~~~~~~L~~vgL~~~~~~- 154 (330)
T PRK09473 109 SLNPYMRVGEQLMEVLMLHKGM---------SKAE------------------------AFEESVRMLDAVKMPEARKR- 154 (330)
T ss_pred hcCCCCCHHHHHHHHHHHhcCC---------CHHH------------------------HHHHHHHHHHHcCCCChHHH-
Confidence 6889999999997764332110 0000 11235668889999754322
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeE
Q 002833 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (875)
Q Consensus 335 vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~v 414 (875)
. +.+++.|||||||||+||++|+.+|++|++||||+|||..++.++++.|+++.+..+.|+|+++|+. ..+.+++|+|
T Consensus 155 ~-~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl-~~~~~~~Dri 232 (330)
T PRK09473 155 M-KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDL-GVVAGICDKV 232 (330)
T ss_pred h-cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCH-HHHHHhCCEE
Confidence 2 3456779999999999999999999999999999999999999999999999876688988887665 4777899999
Q ss_pred EEEeCCeEEEecChhhHH
Q 002833 415 ILLSEGQIVYQGPRDNVL 432 (875)
Q Consensus 415 ilL~~G~iv~~Gp~~~~~ 432 (875)
++|++|++++.|+++++.
T Consensus 233 ~vm~~G~ive~g~~~~i~ 250 (330)
T PRK09473 233 LVMYAGRTMEYGNARDVF 250 (330)
T ss_pred EEEECCEEEEECCHHHHH
Confidence 999999999999998874
No 111
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=1.1e-37 Score=327.50 Aligned_cols=196 Identities=24% Similarity=0.315 Sum_probs=165.1
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc------cCceEEEEecCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLHH 257 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~------~~~~~~yv~Q~d~~~ 257 (875)
+.+|+|+|+.|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (222)
T PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS---AGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLL 91 (222)
T ss_pred CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCChhHHHHHHhheEEEecCcccc
Confidence 46999999999999999999999999999999999999886 999999999875432 135799999999888
Q ss_pred CCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccC
Q 002833 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (875)
Q Consensus 258 ~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (875)
+.+||+||+.+.....+... . +....++.+++.+||.+..++.++
T Consensus 92 ~~~tv~~~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~~~- 136 (222)
T PRK10908 92 MDRTVYDNVAIPLIIAGASG----------D------------------------DIRRRVSAALDKVGLLDKAKNFPI- 136 (222)
T ss_pred ccccHHHHHHhHHHhcCCCH----------H------------------------HHHHHHHHHHHHcCChhhhhCCch-
Confidence 99999999988654322100 0 001124567889999887777665
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEE
Q 002833 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (875)
Q Consensus 338 ~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL 417 (875)
.|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++++ .+.|+|++.|++ .++.+++|+|++|
T Consensus 137 ----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l 210 (222)
T PRK10908 137 ----QLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR-VGVTVLMATHDI-GLISRRSYRMLTL 210 (222)
T ss_pred ----hCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 4999999999999999999999999999999999999999999999976 478888887765 4677889999999
Q ss_pred eCCeEE
Q 002833 418 SEGQIV 423 (875)
Q Consensus 418 ~~G~iv 423 (875)
++|+++
T Consensus 211 ~~G~i~ 216 (222)
T PRK10908 211 SDGHLH 216 (222)
T ss_pred ECCEEc
Confidence 999985
No 112
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.5e-37 Score=330.64 Aligned_cols=211 Identities=26% Similarity=0.371 Sum_probs=173.0
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc----CceEEEEecCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (875)
+++|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 15 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 91 (242)
T TIGR03411 15 FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFEN 91 (242)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHHHHHhcCeeEeccccccCCC
Confidence 46999999999999999999999999999999999999986 9999999998754321 3469999999999999
Q ss_pred CCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCcc
Q 002833 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (875)
Q Consensus 260 lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (875)
+||+||+.+........ . ..+. .... .+....++++++.+||++..++.+++
T Consensus 92 ~tv~~nl~~~~~~~~~~--~---~~~~--------~~~~-------------~~~~~~~~~~l~~~~l~~~~~~~~~~-- 143 (242)
T TIGR03411 92 LTVFENLELALPRDKSV--F---ASLF--------FRLS-------------AEEKDRIEEVLETIGLADEADRLAGL-- 143 (242)
T ss_pred CCHHHHHHHhhhccccc--c---cccc--------cccH-------------HHHHHHHHHHHHHcCCchhhcCChhh--
Confidence 99999998864311000 0 0000 0000 00122457789999999887777764
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeC
Q 002833 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (875)
Q Consensus 340 ~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~ 419 (875)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|++.|++ +++.++||++++|++
T Consensus 144 ---LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~-~~~~~~~d~i~~l~~ 217 (242)
T TIGR03411 144 ---LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--KHSVVVVEHDM-EFVRSIADKVTVLHQ 217 (242)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--CCEEEEEECCH-HHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999975 57888887765 478889999999999
Q ss_pred CeEEEecChhhH
Q 002833 420 GQIVYQGPRDNV 431 (875)
Q Consensus 420 G~iv~~Gp~~~~ 431 (875)
|+++.+|+.+++
T Consensus 218 g~~~~~~~~~~~ 229 (242)
T TIGR03411 218 GSVLAEGSLDQV 229 (242)
T ss_pred CeEEeeCCHHHH
Confidence 999999988765
No 113
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.8e-38 Score=326.01 Aligned_cols=197 Identities=32% Similarity=0.467 Sum_probs=166.3
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc--cCceEEEEecCCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEMT 261 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lT 261 (875)
+.+|+|+|+.+++| +++|+|||||||||||++|+|+++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 13 ~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 88 (211)
T cd03264 13 KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFT 88 (211)
T ss_pred EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCCccccchHHHHhheEEecCCCcccccCC
Confidence 46999999999999 99999999999999999999999986 999999998875432 2467999999999999999
Q ss_pred HHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCC
Q 002833 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (875)
Q Consensus 262 V~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (875)
|+||+.+.....+.. +. +....++.+++.+||.+..++.+++
T Consensus 89 v~~~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~---- 130 (211)
T cd03264 89 VREFLDYIAWLKGIP----------SK------------------------EVKARVDEVLELVNLGDRAKKKIGS---- 130 (211)
T ss_pred HHHHHHHHHHHhCCC----------HH------------------------HHHHHHHHHHHHCCCHHHHhCchhh----
Confidence 999998865432210 00 0012356788999998888877764
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCe
Q 002833 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (875)
Q Consensus 342 gLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~ 421 (875)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|+|++.|++ .++.+++|++++|++|+
T Consensus 131 -LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~-~~~~~~~d~i~~l~~g~ 206 (211)
T cd03264 131 -LSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--DRIVILSTHIV-EDVESLCNQVAVLNKGK 206 (211)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEcCCH-HHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999975 47888877655 46778999999999999
Q ss_pred EEEec
Q 002833 422 IVYQG 426 (875)
Q Consensus 422 iv~~G 426 (875)
+++.|
T Consensus 207 i~~~g 211 (211)
T cd03264 207 LVFEG 211 (211)
T ss_pred EEecC
Confidence 98765
No 114
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-37 Score=333.32 Aligned_cols=220 Identities=22% Similarity=0.293 Sum_probs=174.7
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc----CceEEEEecCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (875)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... +..++|++|++.+++.
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (255)
T PRK11300 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT---GGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFRE 94 (255)
T ss_pred EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---cceEEECCEECCCCCHHHHHhcCeEEeccCcccCCC
Confidence 46999999999999999999999999999999999999986 9999999998765321 2358999999999999
Q ss_pred CCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCcc
Q 002833 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (875)
Q Consensus 260 lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (875)
+||+||+.++.+..... +....+.... .... .. .+....++.+++.+||.+..++.+++
T Consensus 95 ~tv~enl~~~~~~~~~~---~~~~~~~~~~---~~~~--~~-----------~~~~~~~~~~l~~~gl~~~~~~~~~~-- 153 (255)
T PRK11300 95 MTVIENLLVAQHQQLKT---GLFSGLLKTP---AFRR--AE-----------SEALDRAATWLERVGLLEHANRQAGN-- 153 (255)
T ss_pred CcHHHHHHHhhhccccc---hhhhhhcccc---cccc--ch-----------hHHHHHHHHHHHhCChhhhhhCChhh--
Confidence 99999999864311000 0000000000 0000 00 00112356788999998877777664
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeC
Q 002833 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (875)
Q Consensus 340 ~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~ 419 (875)
|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++++..+.|+|++.|++ .++.++||++++|++
T Consensus 154 ---LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~ 229 (255)
T PRK11300 154 ---LAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDM-KLVMGISDRIYVVNQ 229 (255)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH-HHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999999999999999875578998887765 477899999999999
Q ss_pred CeEEEecChhhH
Q 002833 420 GQIVYQGPRDNV 431 (875)
Q Consensus 420 G~iv~~Gp~~~~ 431 (875)
|++++.|+++++
T Consensus 230 g~i~~~~~~~~~ 241 (255)
T PRK11300 230 GTPLANGTPEEI 241 (255)
T ss_pred CeEEecCCHHHH
Confidence 999999998765
No 115
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-37 Score=347.94 Aligned_cols=207 Identities=24% Similarity=0.367 Sum_probs=177.8
Q ss_pred ceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCC-------ccCceEEEEecCCCCCCCCC
Q 002833 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-------VPQRTCAYISQHDLHHGEMT 261 (875)
Q Consensus 189 ~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~-------~~~~~~~yv~Q~d~~~~~lT 261 (875)
|+|+.|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++... ..++.++|++|+..+++++|
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 92 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYK 92 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCc
Confidence 899999999999999999999999999999999986 99999999987531 12467999999999999999
Q ss_pred HHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCC
Q 002833 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (875)
Q Consensus 262 V~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (875)
|+||+.|+.+.. ....++++++.+||.+..+..++
T Consensus 93 v~enl~~~~~~~----------------------------------------~~~~~~~~l~~~gl~~~~~~~~~----- 127 (352)
T PRK11144 93 VRGNLRYGMAKS----------------------------------------MVAQFDKIVALLGIEPLLDRYPG----- 127 (352)
T ss_pred HHHHHHhhhhhh----------------------------------------hHHHHHHHHHHcCCchhhhCCcc-----
Confidence 999998853200 01135678899999988887776
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCe
Q 002833 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (875)
Q Consensus 342 gLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~ 421 (875)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|+++|++ .++.+++|++++|++|+
T Consensus 128 ~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~-~~~~~~~d~i~~l~~G~ 206 (352)
T PRK11144 128 SLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSL-DEILRLADRVVVLEQGK 206 (352)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH-HHHHHhCCEEEEEeCCE
Confidence 49999999999999999999999999999999999999999999999876688988887765 57889999999999999
Q ss_pred EEEecChhhHHHHHHHcCCCCCCCCCHHHHH
Q 002833 422 IVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452 (875)
Q Consensus 422 iv~~Gp~~~~~~~F~~~Gf~~p~~~~~adfl 452 (875)
++..|+++++. ..|....+|+|+
T Consensus 207 i~~~g~~~~i~--------~~p~~~~~~~~~ 229 (352)
T PRK11144 207 VKAFGPLEEVW--------ASSAMRPWLPKE 229 (352)
T ss_pred EEEecCHHHHH--------hCcchhhhhccc
Confidence 99999998873 345555566654
No 116
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-37 Score=335.76 Aligned_cols=205 Identities=26% Similarity=0.329 Sum_probs=172.2
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc---cCceEEEEecCCC-CCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDL-HHGE 259 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~~~yv~Q~d~-~~~~ 259 (875)
+.+|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++. .++.
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (271)
T PRK13632 22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ---SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIG 98 (271)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCc
Confidence 46999999999999999999999999999999999999986 999999999886432 2457999999964 6778
Q ss_pred CCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCcc
Q 002833 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (875)
Q Consensus 260 lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (875)
+||+||+.+.....+.. .. +....++++++.+||.+..++.++
T Consensus 99 ~tv~enl~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~--- 141 (271)
T PRK13632 99 ATVEDDIAFGLENKKVP----------PK------------------------KMKDIIDDLAKKVGMEDYLDKEPQ--- 141 (271)
T ss_pred ccHHHHHHhHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCCHHHhhCCcc---
Confidence 99999998864321110 00 011235678899999888887765
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeC
Q 002833 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (875)
Q Consensus 340 ~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~ 419 (875)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++ ..||++++|++
T Consensus 142 --~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~v~~l~~ 217 (271)
T PRK13632 142 --NLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD-EA-ILADKVIVFSE 217 (271)
T ss_pred --cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh-HH-hhCCEEEEEEC
Confidence 499999999999999999999999999999999999999999999997644589999888875 44 47999999999
Q ss_pred CeEEEecChhhHH
Q 002833 420 GQIVYQGPRDNVL 432 (875)
Q Consensus 420 G~iv~~Gp~~~~~ 432 (875)
|+++..|+.+++.
T Consensus 218 G~i~~~g~~~~~~ 230 (271)
T PRK13632 218 GKLIAQGKPKEIL 230 (271)
T ss_pred CEEEEecCHHHHh
Confidence 9999999988764
No 117
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=2.5e-37 Score=331.11 Aligned_cols=205 Identities=24% Similarity=0.354 Sum_probs=173.0
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc----------------cCceE
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV----------------PQRTC 247 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~----------------~~~~~ 247 (875)
+++|+|||++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i 89 (252)
T TIGR03005 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPID---EGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKI 89 (252)
T ss_pred eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccccccchhHHHHHhhCe
Confidence 46999999999999999999999999999999999999986 999999999875321 14579
Q ss_pred EEEecCCCCCCCCCHHHHHHHhhhh-cCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhC
Q 002833 248 AYISQHDLHHGEMTVRETLDFSGRC-LGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILG 326 (875)
Q Consensus 248 ~yv~Q~d~~~~~lTV~EtL~f~a~~-~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lg 326 (875)
+|++|++.+++.+||.||+.++... .+.. .. +....++++++.+|
T Consensus 90 ~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~g 135 (252)
T TIGR03005 90 GMVFQSFNLFPHKTVLDNVTEAPVLVLGMA----------RA------------------------EAEKRAMELLDMVG 135 (252)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcC
Confidence 9999999999999999999875321 1100 00 00113466889999
Q ss_pred CCccccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchh
Q 002833 327 LDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE 406 (875)
Q Consensus 327 L~~~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~e 406 (875)
|.+..+..+. .|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++++..+.|+|++.|++. +
T Consensus 136 l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~ 209 (252)
T TIGR03005 136 LADKADHMPA-----QLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-F 209 (252)
T ss_pred ChhHhhcChh-----hcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-H
Confidence 9887776654 599999999999999999999999999999999999999999999998755889999877654 6
Q ss_pred HHhhcCeEEEEeCCeEEEecChhhH
Q 002833 407 TYDLFDDIILLSEGQIVYQGPRDNV 431 (875)
Q Consensus 407 i~~lfD~vilL~~G~iv~~Gp~~~~ 431 (875)
+.+++|++++|++|++++.|+.+++
T Consensus 210 ~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T TIGR03005 210 AREFADRVCFFDKGRIVEQGKPDEI 234 (252)
T ss_pred HHHhcCEEEEEECCEEEEeCCHHHH
Confidence 7889999999999999999998766
No 118
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=3.2e-37 Score=366.75 Aligned_cols=209 Identities=28% Similarity=0.437 Sum_probs=175.6
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCC
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGE 259 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~ 259 (875)
++++|+|+|+.++|||.+||+||||||||||+++|+|+++|+ +|+|.+||+++++... ++.++||+|+..+|.
T Consensus 341 ~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~---~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~- 416 (567)
T COG1132 341 KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS- 416 (567)
T ss_pred CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCEehhhcCHHHHHHhccEEcccceeec-
Confidence 457999999999999999999999999999999999999996 9999999999987654 578999999988887
Q ss_pred CCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCcc
Q 002833 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (875)
Q Consensus 260 lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (875)
-||+||+.++. |+...+++.+++...+. .+.+ ..|++..||.||+ .
T Consensus 417 ~TI~~NI~~g~-------------------------~~at~eei~~a~k~a~~------~d~I--~~lp~g~dt~vge-~ 462 (567)
T COG1132 417 GTIRENIALGR-------------------------PDATDEEIEEALKLANA------HEFI--ANLPDGYDTIVGE-R 462 (567)
T ss_pred ccHHHHHhcCC-------------------------CCCCHHHHHHHHHHhCh------HHHH--HhCcccccceecC-C
Confidence 69999999873 22223444444443321 2222 3457789999994 4
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeC
Q 002833 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (875)
Q Consensus 340 ~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~ 419 (875)
...||||||||++||||++.+|++|+||||||+||+.+...|.+.++++.+ ++|+++..|+++ +...+|+|++|++
T Consensus 463 G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~--~rT~iiIaHRls--ti~~aD~IiVl~~ 538 (567)
T COG1132 463 GVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLK--GRTTLIIAHRLS--TIKNADRIIVLDN 538 (567)
T ss_pred CccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhc--CCEEEEEeccHh--HHHhCCEEEEEEC
Confidence 556999999999999999999999999999999999999999999998874 568888777763 4555999999999
Q ss_pred CeEEEecChhhHHH
Q 002833 420 GQIVYQGPRDNVLE 433 (875)
Q Consensus 420 G~iv~~Gp~~~~~~ 433 (875)
|+++++|+++++..
T Consensus 539 G~i~e~G~h~eLl~ 552 (567)
T COG1132 539 GRIVERGTHEELLA 552 (567)
T ss_pred CEEEEecCHHHHHH
Confidence 99999999999865
No 119
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-37 Score=338.68 Aligned_cols=205 Identities=22% Similarity=0.328 Sum_probs=170.5
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCC-------ccCceEEEEecCCC-
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-------VPQRTCAYISQHDL- 255 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~-------~~~~~~~yv~Q~d~- 255 (875)
+.+|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.++|++|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEA 96 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhceEEEEeChhh
Confidence 46999999999999999999999999999999999999996 99999999987532 11356999999862
Q ss_pred CCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCC-cccccc
Q 002833 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTM 334 (875)
Q Consensus 256 ~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~ 334 (875)
.+..+||.||+.|+....+.. +. +....++++++.+||+ +..++.
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gL~~~~~~~~ 142 (287)
T PRK13641 97 QLFENTVLKDVEFGPKNFGFS----------ED------------------------EAKEKALKWLKKVGLSEDLISKS 142 (287)
T ss_pred hhccchHHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCCChhHhhCC
Confidence 344689999998864322110 00 0112356789999997 567777
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeE
Q 002833 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (875)
Q Consensus 335 vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~v 414 (875)
+++ |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|+ .+++.++||+|
T Consensus 143 ~~~-----LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tvlivsH~-~~~~~~~~d~v 215 (287)
T PRK13641 143 PFE-----LSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK-AGHTVILVTHN-MDDVAEYADDV 215 (287)
T ss_pred ccc-----CCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCC-HHHHHHhCCEE
Confidence 664 999999999999999999999999999999999999999999999975 48888887665 45788999999
Q ss_pred EEEeCCeEEEecChhhHH
Q 002833 415 ILLSEGQIVYQGPRDNVL 432 (875)
Q Consensus 415 ilL~~G~iv~~Gp~~~~~ 432 (875)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 216 LVLEHGKLIKHASPKEIF 233 (287)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
No 120
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=2e-37 Score=334.40 Aligned_cols=207 Identities=23% Similarity=0.323 Sum_probs=172.1
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc------cCceEEEEecCC--
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHD-- 254 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~------~~~~~~yv~Q~d-- 254 (875)
.+.+|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|+++|.++.... .++.++|++|++
T Consensus 23 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~ 99 (265)
T TIGR02769 23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPS 99 (265)
T ss_pred ceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEccccCHHHHHHHhhceEEEecChhh
Confidence 356999999999999999999999999999999999999986 999999999876432 135699999986
Q ss_pred CCCCCCCHHHHHHHhhhhc-CCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCC-cccc
Q 002833 255 LHHGEMTVRETLDFSGRCL-GVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICAD 332 (875)
Q Consensus 255 ~~~~~lTV~EtL~f~a~~~-~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~d 332 (875)
.+++.+||+||+.+..... ... .. +....++++++.+||. +..+
T Consensus 100 ~~~~~~tv~~~l~~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gl~~~~~~ 145 (265)
T TIGR02769 100 AVNPRMTVRQIIGEPLRHLTSLD----------ES------------------------EQKARIAELLDMVGLRSEDAD 145 (265)
T ss_pred hcCCCCCHHHHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCCChhhhh
Confidence 4667899999998754211 000 00 0112356788999996 5666
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcC
Q 002833 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (875)
Q Consensus 333 t~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD 412 (875)
..++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|++.|++ ..+.+++|
T Consensus 146 ~~~~-----~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d 219 (265)
T TIGR02769 146 KLPR-----QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDL-RLVQSFCQ 219 (265)
T ss_pred CChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHHhc
Confidence 6655 59999999999999999999999999999999999999999999999875578988887665 46778999
Q ss_pred eEEEEeCCeEEEecChhhHH
Q 002833 413 DIILLSEGQIVYQGPRDNVL 432 (875)
Q Consensus 413 ~vilL~~G~iv~~Gp~~~~~ 432 (875)
++++|++|++++.|+++++.
T Consensus 220 ~i~~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 220 RVAVMDKGQIVEECDVAQLL 239 (265)
T ss_pred EEEEEeCCEEEEECCHHHHc
Confidence 99999999999999988764
No 121
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.8e-37 Score=326.77 Aligned_cols=205 Identities=27% Similarity=0.357 Sum_probs=175.6
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc-CceEEEEecCCCCCCCCCH
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 262 (875)
+.+|+|+|++|+||++++|+|||||||||||++|+|.++|+ +|+|+++|+++..... ++.++|++|+...++.+||
T Consensus 13 ~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 89 (232)
T cd03300 13 FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTV 89 (232)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcceEEEecccccCCCCcH
Confidence 46999999999999999999999999999999999999986 9999999998765322 4679999999999999999
Q ss_pred HHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCC
Q 002833 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (875)
Q Consensus 263 ~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (875)
+||+.+.....+... . .....++.+++.+||.+..++.+. .
T Consensus 90 ~~nl~~~~~~~~~~~---------------------~-------------~~~~~~~~~l~~~~l~~~~~~~~~-----~ 130 (232)
T cd03300 90 FENIAFGLRLKKLPK---------------------A-------------EIKERVAEALDLVQLEGYANRKPS-----Q 130 (232)
T ss_pred HHHHHHHHHhcCCCH---------------------H-------------HHHHHHHHHHHHcCCchhhcCChh-----h
Confidence 999988654322100 0 001235678899999988887765 4
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCeE
Q 002833 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (875)
Q Consensus 343 LSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~i 422 (875)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++.++||++++|++|++
T Consensus 131 lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~G~~ 209 (232)
T cd03300 131 LSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNKGKI 209 (232)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999998655889999887764 67889999999999999
Q ss_pred EEecChhhH
Q 002833 423 VYQGPRDNV 431 (875)
Q Consensus 423 v~~Gp~~~~ 431 (875)
++.|+.+++
T Consensus 210 ~~~~~~~~~ 218 (232)
T cd03300 210 QQIGTPEEI 218 (232)
T ss_pred EecCCHHHH
Confidence 999987765
No 122
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=2.5e-37 Score=325.04 Aligned_cols=197 Identities=27% Similarity=0.365 Sum_probs=170.5
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHH
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (875)
+.+|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .+.++|++|++.+++.+||+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~ 88 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTAR 88 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEeccccc-cccEEEEcCCCCccccCCHH
Confidence 46999999999999999999999999999999999999886 999999999875422 35799999999899999999
Q ss_pred HHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCC
Q 002833 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (875)
Q Consensus 264 EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (875)
||+.+.....+. ....+..+++.+||++..|..+++ |
T Consensus 89 ~~~~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----L 125 (223)
T TIGR03740 89 ENLKVHTTLLGL--------------------------------------PDSRIDEVLNIVDLTNTGKKKAKQ-----F 125 (223)
T ss_pred HHHHHHHHHcCC--------------------------------------CHHHHHHHHHHcCCcHHHhhhHhh-----C
Confidence 999876432210 001245678899999887777654 9
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCeEE
Q 002833 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIV 423 (875)
Q Consensus 344 SGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~iv 423 (875)
||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|++. ++.++||++++|++|+++
T Consensus 126 S~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~ 203 (223)
T TIGR03740 126 SLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE-QGITVILSSHILS-EVQQLADHIGIISEGVLG 203 (223)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHH-HHHHhcCEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999999975 4789999887764 677899999999999999
Q ss_pred EecChh
Q 002833 424 YQGPRD 429 (875)
Q Consensus 424 ~~Gp~~ 429 (875)
+.|++.
T Consensus 204 ~~~~~~ 209 (223)
T TIGR03740 204 YQGKIN 209 (223)
T ss_pred EecChh
Confidence 999865
No 123
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=2.5e-37 Score=328.12 Aligned_cols=202 Identities=24% Similarity=0.323 Sum_probs=169.4
Q ss_pred cccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCC--ccCceEEEEe-cCCCCCC
Q 002833 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF--VPQRTCAYIS-QHDLHHG 258 (875)
Q Consensus 182 ~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~--~~~~~~~yv~-Q~d~~~~ 258 (875)
+.+++|+|+|+.|++||+++|+|||||||||||++|+|.++|+ +|+|.++|++.... ..++.++|++ |++.+++
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWW 108 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEccccchhhcccEEEEcCCccccCC
Confidence 4567999999999999999999999999999999999999986 99999999875432 1245789998 5567788
Q ss_pred CCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCc
Q 002833 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (875)
Q Consensus 259 ~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~ 338 (875)
.+||+|++.+.....+... . +....++.+++.+||.+..|+.+++
T Consensus 109 ~~tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~gl~~~~~~~~~~- 153 (236)
T cd03267 109 DLPVIDSFYLLAAIYDLPP----------A------------------------RFKKRLDELSELLDLEELLDTPVRQ- 153 (236)
T ss_pred CCcHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCChhHhcCChhh-
Confidence 9999999988654322110 0 0012346688899999888888764
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEe
Q 002833 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (875)
Q Consensus 339 ~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~ 418 (875)
||||||||+.||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++.++||++++|+
T Consensus 154 ----LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~ 228 (236)
T cd03267 154 ----LSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVID 228 (236)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEe
Confidence 99999999999999999999999999999999999999999999998755789999877764 7788999999999
Q ss_pred CCeEEEec
Q 002833 419 EGQIVYQG 426 (875)
Q Consensus 419 ~G~iv~~G 426 (875)
+|++++.|
T Consensus 229 ~G~i~~~g 236 (236)
T cd03267 229 KGRLLYDG 236 (236)
T ss_pred CCEEEecC
Confidence 99998765
No 124
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=2.5e-37 Score=330.10 Aligned_cols=206 Identities=22% Similarity=0.367 Sum_probs=169.8
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC--CCCccEEEECCEeCCCC-----ccCceEEEEecCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~--~~~sG~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~ 256 (875)
..+|+|+|++|++||+++|+|||||||||||++|+|.++|+ ...+|+|+++|+++... ..++.++|++|+..+
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 93 (247)
T TIGR00972 14 KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNP 93 (247)
T ss_pred eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCccc
Confidence 45999999999999999999999999999999999999862 12389999999987542 124679999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCC----cccc
Q 002833 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICAD 332 (875)
Q Consensus 257 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~----~~~d 332 (875)
++ +||+||+.+....++... .. +....++.+++.+||. +..+
T Consensus 94 ~~-~tv~e~l~~~~~~~~~~~---------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~ 139 (247)
T TIGR00972 94 FP-MSIYDNIAYGPRLHGIKD---------KK------------------------ELDEIVEESLKKAALWDEVKDRLH 139 (247)
T ss_pred CC-CCHHHHHHhHHHhcCCCC---------HH------------------------HHHHHHHHHHHHcCCCcchhhHhh
Confidence 88 999999988654322100 00 0112356688999997 5666
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcC
Q 002833 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (875)
Q Consensus 333 t~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD 412 (875)
+.++ .|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++++ +.|+|++.|++. ++.+++|
T Consensus 140 ~~~~-----~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~~-~~~~~~d 211 (247)
T TIGR00972 140 DSAL-----GLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--KYTIVIVTHNMQ-QAARISD 211 (247)
T ss_pred CCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCeEEEEecCHH-HHHHhCC
Confidence 6554 5999999999999999999999999999999999999999999999976 478888877654 7788999
Q ss_pred eEEEEeCCeEEEecChhhH
Q 002833 413 DIILLSEGQIVYQGPRDNV 431 (875)
Q Consensus 413 ~vilL~~G~iv~~Gp~~~~ 431 (875)
++++|++|+++++|+++++
T Consensus 212 ~i~~l~~G~i~~~~~~~~~ 230 (247)
T TIGR00972 212 RTAFFYDGELVEYGPTEQI 230 (247)
T ss_pred EEEEEECCEEEEeCCHHHH
Confidence 9999999999999998776
No 125
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.7e-35 Score=358.59 Aligned_cols=209 Identities=30% Similarity=0.442 Sum_probs=178.9
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCC
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGE 259 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~ 259 (875)
+..||+|+|+.|++|+.++|+|||||||||++++|.++++|+ +|+|.++|.++.++.. +..+|.|+|+|.+|.
T Consensus 365 dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~---~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~- 440 (1228)
T KOG0055|consen 365 DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPT---SGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFA- 440 (1228)
T ss_pred cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CceEEEcCccchhcchHHHHhhcCeeeechhhhc-
Confidence 457999999999999999999999999999999999999997 9999999999987654 578999999997775
Q ss_pred CCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCcc
Q 002833 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (875)
Q Consensus 260 lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (875)
.||+||+.|+- |+...+++.+++..+..+. -+..|.+..||.||+..
T Consensus 441 ~tI~eNI~~G~-------------------------~dat~~~i~~a~k~ana~~--------fi~~lp~g~~T~vge~g 487 (1228)
T KOG0055|consen 441 TTIRENIRYGK-------------------------PDATREEIEEAAKAANAHD--------FILKLPDGYDTLVGERG 487 (1228)
T ss_pred ccHHHHHhcCC-------------------------CcccHHHHHHHHHHccHHH--------HHHhhHHhhcccccCCC
Confidence 59999999862 3444455555554433222 24567888999999865
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeC
Q 002833 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (875)
Q Consensus 340 ~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~ 419 (875)
+. ||||||||++|||||+.+|+|||||||||+||+.+...+.+.|.+..+ |+|+|+..|..+ +.+.+|+|++|++
T Consensus 488 ~q-LSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~--grTTivVaHRLS--tIrnaD~I~v~~~ 562 (1228)
T KOG0055|consen 488 VQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASK--GRTTIVVAHRLS--TIRNADKIAVMEE 562 (1228)
T ss_pred CC-CChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhc--CCeEEEEeeehh--hhhccCEEEEEEC
Confidence 55 999999999999999999999999999999999999999999999875 678877777654 5666999999999
Q ss_pred CeEEEecChhhHHH
Q 002833 420 GQIVYQGPRDNVLE 433 (875)
Q Consensus 420 G~iv~~Gp~~~~~~ 433 (875)
|+||+.|.++++..
T Consensus 563 G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 563 GKIVEQGTHDELIA 576 (1228)
T ss_pred CEEEEecCHHHHHh
Confidence 99999999999875
No 126
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=2.3e-37 Score=326.25 Aligned_cols=197 Identities=25% Similarity=0.353 Sum_probs=166.5
Q ss_pred ccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc-------CceEEEEecCCCCC
Q 002833 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHDLHH 257 (875)
Q Consensus 185 ~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~-------~~~~~yv~Q~d~~~ 257 (875)
.+|+|+|++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++|++|+..++
T Consensus 24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~ 100 (228)
T PRK10584 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLI 100 (228)
T ss_pred EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccC
Confidence 5999999999999999999999999999999999999986 9999999998765422 24699999999899
Q ss_pred CCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccC
Q 002833 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (875)
Q Consensus 258 ~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (875)
+.+||.||+.+.....+.. .. +....++++++.+||.+..+..++
T Consensus 101 ~~~tv~~~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~- 145 (228)
T PRK10584 101 PTLNALENVELPALLRGES----------SR------------------------QSRNGAKALLEQLGLGKRLDHLPA- 145 (228)
T ss_pred CCcCHHHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCCHhHhhCChh-
Confidence 9999999998864322110 00 011235678899999887777766
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEE
Q 002833 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (875)
Q Consensus 338 ~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL 417 (875)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++ +.+|++++|
T Consensus 146 ----~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l 219 (228)
T PRK10584 146 ----QLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRL 219 (228)
T ss_pred ----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEE
Confidence 499999999999999999999999999999999999999999999997655889999888765 45 569999999
Q ss_pred eCCeEEEe
Q 002833 418 SEGQIVYQ 425 (875)
Q Consensus 418 ~~G~iv~~ 425 (875)
++|++++.
T Consensus 220 ~~g~i~~~ 227 (228)
T PRK10584 220 VNGQLQEE 227 (228)
T ss_pred ECCEEEec
Confidence 99999753
No 127
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-37 Score=341.70 Aligned_cols=207 Identities=20% Similarity=0.255 Sum_probs=174.1
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc------cCceEEEEecCC--C
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHD--L 255 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~------~~~~~~yv~Q~d--~ 255 (875)
..+|+|||++|++||+++|+|+||||||||+++|+|+++|. +|+|.++|+++.... .++.++||+|++ .
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~---~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~ 104 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPT---GGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGS 104 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhh
Confidence 56999999999999999999999999999999999999886 999999999986542 245799999997 5
Q ss_pred CCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCC-cccccc
Q 002833 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTM 334 (875)
Q Consensus 256 ~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~ 334 (875)
+.|.+||.+++.+..+.... +.+.+ ....+.++|+.+||. ...++.
T Consensus 105 l~p~~~v~~~l~~~~~~~~~---------~~~~~------------------------~~~~~~~~l~~~gL~~~~~~~~ 151 (327)
T PRK11308 105 LNPRKKVGQILEEPLLINTS---------LSAAE------------------------RREKALAMMAKVGLRPEHYDRY 151 (327)
T ss_pred cCCccCHHHHHHHHHHHccC---------CCHHH------------------------HHHHHHHHHHHCCCChHHhcCC
Confidence 88999999999876543210 00000 122456789999996 355665
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeE
Q 002833 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (875)
Q Consensus 335 vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~v 414 (875)
++ .|||||||||+||+||+.+|++|++||||+|||..++.+|++.|+++.+..+.|+|+++|+ ...+.+++|+|
T Consensus 152 p~-----~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHd-l~~~~~~adrv 225 (327)
T PRK11308 152 PH-----MFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHD-LSVVEHIADEV 225 (327)
T ss_pred Cc-----cCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC-HHHHHHhCCEE
Confidence 54 5999999999999999999999999999999999999999999999987668888887655 55777899999
Q ss_pred EEEeCCeEEEecChhhHH
Q 002833 415 ILLSEGQIVYQGPRDNVL 432 (875)
Q Consensus 415 ilL~~G~iv~~Gp~~~~~ 432 (875)
++|++|++++.|+.+++.
T Consensus 226 ~vm~~G~ive~g~~~~~~ 243 (327)
T PRK11308 226 MVMYLGRCVEKGTKEQIF 243 (327)
T ss_pred EEEECCEEEEECCHHHHh
Confidence 999999999999998874
No 128
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-37 Score=322.73 Aligned_cols=195 Identities=23% Similarity=0.354 Sum_probs=165.1
Q ss_pred ceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc-CceEEEEecCCCCCCCCCHHHHHH
Q 002833 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTVRETLD 267 (875)
Q Consensus 189 ~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~EtL~ 267 (875)
|+|+.|++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++|++|+..+++.+||+||+.
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~ 92 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVG 92 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHh
Confidence 999999999999999999999999999999999986 9999999998765432 457999999999999999999998
Q ss_pred HhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCCCHHH
Q 002833 268 FSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQ 347 (875)
Q Consensus 268 f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGe 347 (875)
+........ .+ +....++++++.+||.+..++.+. .|||||
T Consensus 93 ~~~~~~~~~---------~~-------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~ 133 (211)
T cd03298 93 LGLSPGLKL---------TA-------------------------EDRQAIEVALARVGLAGLEKRLPG-----ELSGGE 133 (211)
T ss_pred cccccccCc---------cH-------------------------HHHHHHHHHHHHcCCHHHHhCCcc-----cCCHHH
Confidence 764311000 00 011235678999999888777765 599999
Q ss_pred HHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCeEEEec
Q 002833 348 KKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQG 426 (875)
Q Consensus 348 rkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~iv~~G 426 (875)
||||+||++|+.+|++++|||||+|||..++..+.+.|+++++..+.|+|++.|++ .++.++||++++|++|+++..|
T Consensus 134 ~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 134 RQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQP-EDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999999999999999999999865588988887654 4777899999999999998764
No 129
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-37 Score=336.56 Aligned_cols=208 Identities=25% Similarity=0.322 Sum_probs=173.4
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc---cCceEEEEecCCC-CCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDL-HHGE 259 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~~~yv~Q~d~-~~~~ 259 (875)
+++|+|||++|++||+++|+||||||||||+++|+|.++|+...+|+|+++|.++.... .++.++|++|++. .++.
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 99 (282)
T PRK13640 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVG 99 (282)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhcc
Confidence 45999999999999999999999999999999999999886212399999999886432 2457999999974 6778
Q ss_pred CCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCcc
Q 002833 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (875)
Q Consensus 260 lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (875)
+||.||+.|..+..+.. +. +....++.+++.+||.+..++.+.
T Consensus 100 ~tv~enl~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~L~~~~~~~~~--- 142 (282)
T PRK13640 100 ATVGDDVAFGLENRAVP----------RP------------------------EMIKIVRDVLADVGMLDYIDSEPA--- 142 (282)
T ss_pred CCHHHHHHhhHHhCCCC----------HH------------------------HHHHHHHHHHHHCCChhHhcCCcc---
Confidence 99999998864322110 00 011235678899999887777765
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeC
Q 002833 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (875)
Q Consensus 340 ~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~ 419 (875)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++ ..||++++|++
T Consensus 143 --~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~-~~~d~i~~l~~ 218 (282)
T PRK13640 143 --NLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID-EA-NMADQVLVLDD 218 (282)
T ss_pred --cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC
Confidence 599999999999999999999999999999999999999999999998755889999888765 45 57999999999
Q ss_pred CeEEEecChhhHH
Q 002833 420 GQIVYQGPRDNVL 432 (875)
Q Consensus 420 G~iv~~Gp~~~~~ 432 (875)
|++++.|+++++.
T Consensus 219 G~i~~~g~~~~~~ 231 (282)
T PRK13640 219 GKLLAQGSPVEIF 231 (282)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999998874
No 130
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-37 Score=334.67 Aligned_cols=205 Identities=21% Similarity=0.322 Sum_probs=168.6
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc-------cCceEEEEecCCC-
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-------PQRTCAYISQHDL- 255 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~-------~~~~~~yv~Q~d~- 255 (875)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|+..
T Consensus 20 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (280)
T PRK13649 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT---QGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPES 96 (280)
T ss_pred cceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccCHHHHHhheEEEeeChhh
Confidence 45999999999999999999999999999999999999986 999999999875421 1356999999862
Q ss_pred CCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCC-cccccc
Q 002833 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTM 334 (875)
Q Consensus 256 ~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~ 334 (875)
.+...||+||+.|.....+.. .. +....++++++.+||. ...+..
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~ 142 (280)
T PRK13649 97 QLFEETVLKDVAFGPQNFGVS----------QE------------------------EAEALAREKLALVGISESLFEKN 142 (280)
T ss_pred hhccccHHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCCChhhhhCC
Confidence 333469999998864322110 00 0012346688899997 355666
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeE
Q 002833 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (875)
Q Consensus 335 vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~v 414 (875)
++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.+++|++
T Consensus 143 ~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivsH~~-~~~~~~~d~i 215 (280)
T PRK13649 143 PF-----ELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ-SGMTIVLVTHLM-DDVANYADFV 215 (280)
T ss_pred cc-----cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeccH-HHHHHhCCEE
Confidence 55 5999999999999999999999999999999999999999999999976 478999988765 4777899999
Q ss_pred EEEeCCeEEEecChhhHH
Q 002833 415 ILLSEGQIVYQGPRDNVL 432 (875)
Q Consensus 415 ilL~~G~iv~~Gp~~~~~ 432 (875)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 216 YVLEKGKLVLSGKPKDIF 233 (280)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988763
No 131
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=6e-37 Score=372.13 Aligned_cols=204 Identities=27% Similarity=0.400 Sum_probs=170.8
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (875)
+++|+|+|++|+|||.++|+||||||||||+|+|+|+++|+ +|+|.+||+++.+..+ ++.++||+|++.+|+.
T Consensus 466 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g- 541 (686)
T TIGR03797 466 PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE---SGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSG- 541 (686)
T ss_pred ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcCcCCHHHHHhccEEEccCCccCcc-
Confidence 46999999999999999999999999999999999999997 9999999999987654 5789999999888865
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccC
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (875)
|++|||.++.. .+.+++.+++...+. ++. .-.|++..||.+|+. .
T Consensus 542 TI~eNi~~~~~--------------------------~~~e~i~~al~~a~l------~~~--i~~lp~G~dt~ige~-G 586 (686)
T TIGR03797 542 SIFENIAGGAP--------------------------LTLDEAWEAARMAGL------AED--IRAMPMGMHTVISEG-G 586 (686)
T ss_pred cHHHHHhcCCC--------------------------CCHHHHHHHHHHcCc------HHH--HHhccccccccccCC-C
Confidence 99999988521 111222333332221 111 224567789999964 5
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCC
Q 002833 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (875)
Q Consensus 341 rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G 420 (875)
..||||||||++|||||+.+|++|+|||||++||+.++.++.+.|+++ ++|+|++.|++ ++.+.+|+|++|++|
T Consensus 587 ~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr~--~~i~~~D~Iivl~~G 660 (686)
T TIGR03797 587 GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIVIAHRL--STIRNADRIYVLDAG 660 (686)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEEEecCh--HHHHcCCEEEEEECC
Confidence 679999999999999999999999999999999999999999999885 46888888876 567889999999999
Q ss_pred eEEEecChhhHH
Q 002833 421 QIVYQGPRDNVL 432 (875)
Q Consensus 421 ~iv~~Gp~~~~~ 432 (875)
+++++|+++++.
T Consensus 661 ~iv~~G~~~~Ll 672 (686)
T TIGR03797 661 RVVQQGTYDELM 672 (686)
T ss_pred EEEEECCHHHHH
Confidence 999999999875
No 132
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=3.2e-37 Score=325.87 Aligned_cols=204 Identities=23% Similarity=0.299 Sum_probs=169.2
Q ss_pred cccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCC----CCCCccEEEECCEeCCCCcc-CceEEEEecCCC--CCC
Q 002833 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGK----DLRASGKITYCGHELNEFVP-QRTCAYISQHDL--HHG 258 (875)
Q Consensus 186 IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~----~~~~sG~I~~nG~~~~~~~~-~~~~~yv~Q~d~--~~~ 258 (875)
+|+|+|++|++|++++|+|||||||||||++|+|.++| + +|+|.++|+++..... ++.++|++|++. +.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 77 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQT---SGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNP 77 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCcc---ccEEEECCEechhhhhhhheeEEEecCchhhcCc
Confidence 58999999999999999999999999999999999987 5 9999999998765422 357999999974 567
Q ss_pred CCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCC---ccccccc
Q 002833 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD---ICADTMV 335 (875)
Q Consensus 259 ~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~---~~~dt~v 335 (875)
.+|+.|++.+.....+.. .. +....++++++.+||. +..+..+
T Consensus 78 ~~t~~~~~~~~~~~~~~~---------~~-------------------------~~~~~~~~~l~~~~l~~~~~~~~~~~ 123 (230)
T TIGR02770 78 LFTMGNHAIETLRSLGKL---------SK-------------------------QARALILEALEAVGLPDPEEVLKKYP 123 (230)
T ss_pred ccCHHHHHHHHHHHcCcc---------HH-------------------------HHHHHHHHHHHHcCCCchHHHHhCCh
Confidence 789999997754322110 00 0112356789999997 3455555
Q ss_pred cCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEE
Q 002833 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (875)
Q Consensus 336 g~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vi 415 (875)
+ .|||||||||+||++|+.+|++|+|||||+|||..+...+.+.|+++++..+.|+|++.|++. ++..++|+++
T Consensus 124 ~-----~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~ 197 (230)
T TIGR02770 124 F-----QLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVA 197 (230)
T ss_pred h-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 4 599999999999999999999999999999999999999999999998655788888877654 7888999999
Q ss_pred EEeCCeEEEecChhhHH
Q 002833 416 LLSEGQIVYQGPRDNVL 432 (875)
Q Consensus 416 lL~~G~iv~~Gp~~~~~ 432 (875)
+|++|+++..|+++++.
T Consensus 198 ~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 198 VMDDGRIVERGTVKEIF 214 (230)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988763
No 133
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-37 Score=333.47 Aligned_cols=205 Identities=27% Similarity=0.354 Sum_probs=169.9
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCC--C---ccCceEEEEecCCC-CC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE--F---VPQRTCAYISQHDL-HH 257 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~--~---~~~~~~~yv~Q~d~-~~ 257 (875)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.. . ..++.++|++|++. .+
T Consensus 14 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (271)
T PRK13638 14 EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQI 90 (271)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ccEEEECCEEcccccCCHHHHHhheEEEeeChhhcc
Confidence 46999999999999999999999999999999999999986 9999999998742 1 11356999999865 34
Q ss_pred CCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccC
Q 002833 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (875)
Q Consensus 258 ~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (875)
...||.||+.+.....+.. ..+ ....++.+++.+||.+..++.++
T Consensus 91 ~~~~~~~~l~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~- 135 (271)
T PRK13638 91 FYTDIDSDIAFSLRNLGVP----------EAE------------------------ITRRVDEALTLVDAQHFRHQPIQ- 135 (271)
T ss_pred ccccHHHHHHHHHHHcCCC----------HHH------------------------HHHHHHHHHHHcCCHhHhcCCch-
Confidence 5568999998864322210 000 01234668889999888777765
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEE
Q 002833 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (875)
Q Consensus 338 ~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL 417 (875)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.+++|++++|
T Consensus 136 ----~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~-~~~~~~~d~i~~l 209 (271)
T PRK13638 136 ----CLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA-QGNHVIISSHDI-DLIYEISDAVYVL 209 (271)
T ss_pred ----hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 4999999999999999999999999999999999999999999999975 478888887655 4777899999999
Q ss_pred eCCeEEEecChhhHH
Q 002833 418 SEGQIVYQGPRDNVL 432 (875)
Q Consensus 418 ~~G~iv~~Gp~~~~~ 432 (875)
++|++++.|+++++.
T Consensus 210 ~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 210 RQGQILTHGAPGEVF 224 (271)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999988763
No 134
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-37 Score=350.32 Aligned_cols=210 Identities=28% Similarity=0.419 Sum_probs=174.8
Q ss_pred cccccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc---cCceEEEEecCCCC
Q 002833 180 KKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLH 256 (875)
Q Consensus 180 ~~~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~~~yv~Q~d~~ 256 (875)
+.+++++++|+|++++||+.++|+|+||||||||+++|+|+++|+ +|+|.+||++..+.. .+++++||+|++.+
T Consensus 330 y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~---~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~l 406 (559)
T COG4988 330 YPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWRKQISWVSQNPYL 406 (559)
T ss_pred cCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCccccccCHHHHHhHeeeeCCCCcc
Confidence 333447999999999999999999999999999999999999996 999999999987765 36899999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCcccccccc
Q 002833 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (875)
Q Consensus 257 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (875)
++. |++||+.++. ++.+.+++.+++... .+.+.+.-+...||.+|
T Consensus 407 f~g-TireNi~l~~-------------------------~~~s~e~i~~al~~a---------~l~~~v~~p~GLdt~ig 451 (559)
T COG4988 407 FAG-TIRENILLAR-------------------------PDASDEEIIAALDQA---------GLLEFVPKPDGLDTVIG 451 (559)
T ss_pred ccc-cHHHHhhccC-------------------------CcCCHHHHHHHHHHh---------cHHHhhcCCCcccchhc
Confidence 875 9999999863 112222222222211 12233333567899999
Q ss_pred CccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEE
Q 002833 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (875)
Q Consensus 337 ~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vil 416 (875)
+ ..++|||||+|||++||||+.+++++++||||++||..|+..|.+.|.++++ ++|++++.|++ ....-+|+|++
T Consensus 452 e-~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~itHrl--~~~~~~D~I~v 526 (559)
T COG4988 452 E-GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLVITHRL--EDAADADRIVV 526 (559)
T ss_pred c-CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEEEEcCh--HHHhcCCEEEE
Confidence 5 5778999999999999999999999999999999999999999999999986 58999988876 45677999999
Q ss_pred EeCCeEEEecChhhHH
Q 002833 417 LSEGQIVYQGPRDNVL 432 (875)
Q Consensus 417 L~~G~iv~~Gp~~~~~ 432 (875)
|++|+++..|.++++.
T Consensus 527 ld~G~l~~~g~~~~L~ 542 (559)
T COG4988 527 LDNGRLVEQGTHEELS 542 (559)
T ss_pred ecCCceeccCCHHHHh
Confidence 9999999999999884
No 135
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.6e-37 Score=340.66 Aligned_cols=210 Identities=20% Similarity=0.260 Sum_probs=172.2
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCC-CCccEEEECCEeCCCCcc-------CceEEEEecCC-
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL-RASGKITYCGHELNEFVP-------QRTCAYISQHD- 254 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~-~~sG~I~~nG~~~~~~~~-------~~~~~yv~Q~d- 254 (875)
..+|+|||++|++||+++|+|+||||||||+++|+|++++.. ..+|+|.++|+++..... ++.++||+|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 469999999999999999999999999999999999987422 148999999999865432 24699999997
Q ss_pred -CCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCc---c
Q 002833 255 -LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI---C 330 (875)
Q Consensus 255 -~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~---~ 330 (875)
.+.|.+||.+++....+..... .+. +....++++|+.+||.+ .
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~~~~---------~~~------------------------~~~~~~~~~L~~~gL~~~~~~ 146 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVHQGG---------NKK------------------------TRRQRAIDLLNQVGIPDPASR 146 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHhcCC---------CHH------------------------HHHHHHHHHHHHCCCCChHHH
Confidence 4789999999887654322100 000 01224567899999975 2
Q ss_pred ccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhh
Q 002833 331 ADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL 410 (875)
Q Consensus 331 ~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~l 410 (875)
.+.. ++.|||||||||+||+||+.+|++|++||||+|||..++.++++.|+++.++.+.|+|+++|+. ..+.++
T Consensus 147 l~~~-----p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl-~~~~~~ 220 (326)
T PRK11022 147 LDVY-----PHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDL-ALVAEA 220 (326)
T ss_pred HhCC-----chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHh
Confidence 3444 4569999999999999999999999999999999999999999999999876788998887665 467789
Q ss_pred cCeEEEEeCCeEEEecChhhHH
Q 002833 411 FDDIILLSEGQIVYQGPRDNVL 432 (875)
Q Consensus 411 fD~vilL~~G~iv~~Gp~~~~~ 432 (875)
+|+|++|++|++++.|+++++.
T Consensus 221 adri~vm~~G~ive~g~~~~~~ 242 (326)
T PRK11022 221 AHKIIVMYAGQVVETGKAHDIF 242 (326)
T ss_pred CCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999998874
No 136
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=3e-37 Score=326.28 Aligned_cols=202 Identities=27% Similarity=0.319 Sum_probs=168.5
Q ss_pred ccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHHHHH
Q 002833 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETL 266 (875)
Q Consensus 187 L~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~EtL 266 (875)
|+|+|+.|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ..+|++|++.+++.+||.||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHH
Confidence 58999999999999999999999999999999999986 9999999998765432 248999999999999999999
Q ss_pred HHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCCCHH
Q 002833 267 DFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGG 346 (875)
Q Consensus 267 ~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGG 346 (875)
.+.......+ ..+. +....++++++.+||++..++.++ .||||
T Consensus 76 ~~~~~~~~~~--------~~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG 118 (230)
T TIGR01184 76 ALAVDRVLPD--------LSKS------------------------ERRAIVEEHIALVGLTEAADKRPG-----QLSGG 118 (230)
T ss_pred HHHHHhcccC--------CCHH------------------------HHHHHHHHHHHHcCCHHHHcCChh-----hCCHH
Confidence 8863210000 0000 011235678899999888787766 49999
Q ss_pred HHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCeEEEec
Q 002833 347 QKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQG 426 (875)
Q Consensus 347 erkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~iv~~G 426 (875)
|||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..++|+|++.|++. ++.++||+|++|++|+++..|
T Consensus 119 ~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~~ 197 (230)
T TIGR01184 119 MKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTNGPAANIG 197 (230)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCcEeccc
Confidence 9999999999999999999999999999999999999999998755889998877654 778899999999999999988
Q ss_pred ChhhH
Q 002833 427 PRDNV 431 (875)
Q Consensus 427 p~~~~ 431 (875)
+..++
T Consensus 198 ~~~~~ 202 (230)
T TIGR01184 198 QILEV 202 (230)
T ss_pred Cceec
Confidence 65443
No 137
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-37 Score=331.32 Aligned_cols=205 Identities=20% Similarity=0.308 Sum_probs=166.9
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC--CCCccEEEECCEeCCCC-----ccCceEEEEecCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~--~~~sG~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~ 256 (875)
+.+|+|+|++|++||+++|+|||||||||||++|+|++++. ...+|+|.++|+++... ..++.++|++|+..+
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 104 (258)
T PRK14268 25 KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNP 104 (258)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCcc
Confidence 46999999999999999999999999999999999998751 01399999999987432 124569999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCC----cccc
Q 002833 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICAD 332 (875)
Q Consensus 257 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~----~~~d 332 (875)
++ +||+||+.|..+..+.. .++ ....++++++.+|+. +..+
T Consensus 105 ~~-~tv~enl~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~ 149 (258)
T PRK14268 105 FP-MSIYDNVAYGPRIHGAN----------KKD------------------------LDGVVENALRSAALWDETSDRLK 149 (258)
T ss_pred Cc-ccHHHHHHHHHHHcCCC----------HHH------------------------HHHHHHHHHHHcCCCcchhhhhc
Confidence 87 89999999865432210 000 011346678888884 3345
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcC
Q 002833 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (875)
Q Consensus 333 t~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD 412 (875)
+.++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|++.|++ +++.++||
T Consensus 150 ~~~~-----~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~--~~tiiivsH~~-~~~~~~~d 221 (258)
T PRK14268 150 SPAL-----SLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK--DYTIVIVTHNM-QQAARISD 221 (258)
T ss_pred CChh-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh--CCEEEEEECCH-HHHHHhCC
Confidence 5544 5999999999999999999999999999999999999999999999864 68888887765 46778999
Q ss_pred eEEEEeCCeEEEecChhhH
Q 002833 413 DIILLSEGQIVYQGPRDNV 431 (875)
Q Consensus 413 ~vilL~~G~iv~~Gp~~~~ 431 (875)
++++|++|++++.|+++++
T Consensus 222 ~i~~l~~G~i~~~~~~~~~ 240 (258)
T PRK14268 222 YTGFFLMGELIEFGQTRQI 240 (258)
T ss_pred EEEEEECCEEEEeCCHHHH
Confidence 9999999999999998876
No 138
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-37 Score=325.62 Aligned_cols=201 Identities=23% Similarity=0.393 Sum_probs=170.9
Q ss_pred ceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc-CceEEEEecCCCCCCCCCHHHHHH
Q 002833 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTVRETLD 267 (875)
Q Consensus 189 ~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~EtL~ 267 (875)
|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+||.||+.
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 93 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIG 93 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHh
Confidence 899999999999999999999999999999999986 9999999998764322 457999999999999999999998
Q ss_pred HhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCCCHHH
Q 002833 268 FSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQ 347 (875)
Q Consensus 268 f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGe 347 (875)
+.... ..... + .....++++++.+||++..++.+.. |||||
T Consensus 94 ~~~~~-~~~~~--------~-------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~ 134 (232)
T PRK10771 94 LGLNP-GLKLN--------A-------------------------AQREKLHAIARQMGIEDLLARLPGQ-----LSGGQ 134 (232)
T ss_pred ccccc-ccCCC--------H-------------------------HHHHHHHHHHHHcCcHHHHhCCccc-----CCHHH
Confidence 75321 00000 0 0112356788999999888887764 99999
Q ss_pred HHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCeEEEecC
Q 002833 348 KKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGP 427 (875)
Q Consensus 348 rkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~iv~~Gp 427 (875)
||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++.+++|++++|++|++++.|+
T Consensus 135 ~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~g~ 213 (232)
T PRK10771 135 RQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVADGRIAWDGP 213 (232)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999999997755789999877654 6778999999999999999999
Q ss_pred hhhHH
Q 002833 428 RDNVL 432 (875)
Q Consensus 428 ~~~~~ 432 (875)
.+++.
T Consensus 214 ~~~~~ 218 (232)
T PRK10771 214 TDELL 218 (232)
T ss_pred HHHHH
Confidence 87664
No 139
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.1e-37 Score=317.18 Aligned_cols=182 Identities=45% Similarity=0.750 Sum_probs=156.8
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc--cCceEEEEecCCCCCCCC
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEM 260 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~l 260 (875)
++.+|+|+|+.|++||+++|+|||||||||||++|+|+++|....+|+|.++|+++.... .++.++|++|++.+++.+
T Consensus 19 ~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 98 (202)
T cd03233 19 KIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTL 98 (202)
T ss_pred CceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCC
Confidence 457999999999999999999999999999999999999831123999999999876532 246799999999999999
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccC
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (875)
||+||+.++.+.. .+. .+
T Consensus 99 tv~~~l~~~~~~~---------------------------------------------------------~~~-----~~ 116 (202)
T cd03233 99 TVRETLDFALRCK---------------------------------------------------------GNE-----FV 116 (202)
T ss_pred cHHHHHhhhhhhc---------------------------------------------------------ccc-----ch
Confidence 9999998753210 122 23
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCC
Q 002833 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (875)
Q Consensus 341 rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G 420 (875)
..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|+++||+.+++.+++|++++|++|
T Consensus 117 ~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G 196 (202)
T cd03233 117 RGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEG 196 (202)
T ss_pred hhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECC
Confidence 45999999999999999999999999999999999999999999999986546788888888878899999999999999
Q ss_pred eEEEec
Q 002833 421 QIVYQG 426 (875)
Q Consensus 421 ~iv~~G 426 (875)
++++.|
T Consensus 197 ~i~~~g 202 (202)
T cd03233 197 RQIYYG 202 (202)
T ss_pred EEEecC
Confidence 998765
No 140
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-37 Score=330.91 Aligned_cols=207 Identities=20% Similarity=0.302 Sum_probs=166.5
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCC--CCccEEEECCEeCCCC-----ccCceEEEEecCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL--RASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~--~~sG~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~ 256 (875)
+.+|+|+|+.|++||+++|+|||||||||||++|+|.++|.. ..+|+|.++|+++... ..++.++|++|++..
T Consensus 20 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 99 (254)
T PRK14273 20 FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNP 99 (254)
T ss_pred ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecccc
Confidence 459999999999999999999999999999999999998621 1389999999986421 124679999999877
Q ss_pred CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCC----Ccccc
Q 002833 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGL----DICAD 332 (875)
Q Consensus 257 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL----~~~~d 332 (875)
++ +||+||+.+.....+.... . +....++.+++.+|+ .+..+
T Consensus 100 ~~-~tv~eni~~~~~~~~~~~~---------~------------------------~~~~~~~~~l~~~~l~~~l~~~~~ 145 (254)
T PRK14273 100 FL-MSIYDNISYGPKIHGTKDK---------K------------------------KLDEIVEQSLKKSALWNEVKDKLN 145 (254)
T ss_pred cc-CcHHHHHHHHHHhcCCCCH---------H------------------------HHHHHHHHHHHHhCCchhhHHHHh
Confidence 75 8999999886433211000 0 001234556777777 33455
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcC
Q 002833 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (875)
Q Consensus 333 t~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD 412 (875)
+.++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|++.|++. ++.+++|
T Consensus 146 ~~~~-----~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tvii~sH~~~-~~~~~~d 217 (254)
T PRK14273 146 TNAL-----SLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE--SYTIIIVTHNMQ-QAGRISD 217 (254)
T ss_pred CCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc--CCEEEEEeCCHH-HHHHhCC
Confidence 5544 5999999999999999999999999999999999999999999999963 678888777654 6788999
Q ss_pred eEEEEeCCeEEEecChhhHH
Q 002833 413 DIILLSEGQIVYQGPRDNVL 432 (875)
Q Consensus 413 ~vilL~~G~iv~~Gp~~~~~ 432 (875)
++++|++|+++..|+++++.
T Consensus 218 ~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 218 RTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988763
No 141
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2.6e-37 Score=321.99 Aligned_cols=194 Identities=29% Similarity=0.428 Sum_probs=162.0
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc---cCceEEEEecCCC-CCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDL-HHGE 259 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~~~yv~Q~d~-~~~~ 259 (875)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++. .++.
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFG 90 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccCCHHHHHhhceEEecChhhhcCC
Confidence 56999999999999999999999999999999999999986 999999999876432 1357899999864 4678
Q ss_pred CCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCcc
Q 002833 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (875)
Q Consensus 260 lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (875)
+||+||+.+.....+.. .. +....++++++.+||.+..++.++
T Consensus 91 ~t~~~~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~--- 133 (211)
T cd03225 91 PTVEEEVAFGLENLGLP----------EE------------------------EIEERVEEALELVGLEGLRDRSPF--- 133 (211)
T ss_pred CcHHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCcHhhhcCCcc---
Confidence 99999998764322110 00 001234668889999877777665
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeC
Q 002833 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (875)
Q Consensus 340 ~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~ 419 (875)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++. +.|+|++.|++ .++.++||++++|++
T Consensus 134 --~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tvi~~sH~~-~~~~~~~d~i~~l~~ 209 (211)
T cd03225 134 --TLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE-GKTIIIVTHDL-DLLLELADRVIVLED 209 (211)
T ss_pred --cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCH-HHHHHhCCEEEEEeC
Confidence 49999999999999999999999999999999999999999999999864 88988887765 477888999999999
Q ss_pred Ce
Q 002833 420 GQ 421 (875)
Q Consensus 420 G~ 421 (875)
|+
T Consensus 210 G~ 211 (211)
T cd03225 210 GK 211 (211)
T ss_pred CC
Confidence 85
No 142
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=4.6e-37 Score=344.63 Aligned_cols=199 Identities=26% Similarity=0.438 Sum_probs=171.9
Q ss_pred ceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCC-------ccCceEEEEecCCCCCCCCC
Q 002833 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-------VPQRTCAYISQHDLHHGEMT 261 (875)
Q Consensus 189 ~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~-------~~~~~~~yv~Q~d~~~~~lT 261 (875)
|+|+.|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++... ..++.++|++|++.+++.+|
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 91 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLS 91 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCc
Confidence 999999999999999999999999999999999986 99999999987532 12467999999999999999
Q ss_pred HHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCC
Q 002833 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (875)
Q Consensus 262 V~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (875)
|+||+.|+.+.... . +....++++++.+||.+..++.+++
T Consensus 92 v~enl~~~~~~~~~------------~------------------------~~~~~~~~~l~~~gL~~~~~~~~~~---- 131 (354)
T TIGR02142 92 VRGNLRYGMKRARP------------S------------------------ERRISFERVIELLGIGHLLGRLPGR---- 131 (354)
T ss_pred HHHHHHHHhhccCh------------h------------------------HHHHHHHHHHHHcCChhHhcCChhh----
Confidence 99999986432100 0 0012356789999999888877764
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCe
Q 002833 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (875)
Q Consensus 342 gLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~ 421 (875)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|+++|++ +++.+++|++++|++|+
T Consensus 132 -LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~-~~~~~~~d~i~~l~~G~ 209 (354)
T TIGR02142 132 -LSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSL-QEVLRLADRVVVLEDGR 209 (354)
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCE
Confidence 9999999999999999999999999999999999999999999999876688988887765 47888999999999999
Q ss_pred EEEecChhhHH
Q 002833 422 IVYQGPRDNVL 432 (875)
Q Consensus 422 iv~~Gp~~~~~ 432 (875)
++..|+++++.
T Consensus 210 i~~~g~~~~~~ 220 (354)
T TIGR02142 210 VAAAGPIAEVW 220 (354)
T ss_pred EEEECCHHHHh
Confidence 99999988764
No 143
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-37 Score=327.86 Aligned_cols=200 Identities=24% Similarity=0.360 Sum_probs=168.6
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (875)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++ .
T Consensus 16 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~ 91 (241)
T PRK14250 16 KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-G 91 (241)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcChHHhhhcEEEEecCchhch-h
Confidence 45999999999999999999999999999999999999986 9999999998754322 457999999987776 6
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCC-ccccccccCcc
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVGDEM 339 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~~~ 339 (875)
||+||+.+.....+. ....++.+++.+||+ +..++.+.
T Consensus 92 tv~e~l~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~~~--- 130 (241)
T PRK14250 92 TVKDNIEYGPMLKGE--------------------------------------KNVDVEYYLSIVGLNKEYATRDVK--- 130 (241)
T ss_pred hHHHHHhcchhhcCc--------------------------------------HHHHHHHHHHHcCCCHHHhhCCcc---
Confidence 999999875321100 001245678889996 45565554
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeC
Q 002833 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (875)
Q Consensus 340 ~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~ 419 (875)
.|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++++..+.|+|++.|++. ++.++||+|++|++
T Consensus 131 --~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~ 207 (241)
T PRK14250 131 --NLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNK 207 (241)
T ss_pred --cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeC
Confidence 599999999999999999999999999999999999999999999997655889888877654 67889999999999
Q ss_pred CeEEEecChhhH
Q 002833 420 GQIVYQGPRDNV 431 (875)
Q Consensus 420 G~iv~~Gp~~~~ 431 (875)
|+++..|+++++
T Consensus 208 G~i~~~~~~~~~ 219 (241)
T PRK14250 208 GILVEYAKTYDF 219 (241)
T ss_pred CEEEEeCCHHHH
Confidence 999999998876
No 144
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.6e-37 Score=325.18 Aligned_cols=204 Identities=27% Similarity=0.422 Sum_probs=174.3
Q ss_pred cccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc-CceEEEEecCCCCCCCCCHHH
Q 002833 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTVRE 264 (875)
Q Consensus 186 IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E 264 (875)
+|+|+|++|+|||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||.|
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~---~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 90 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYK 90 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHH
Confidence 899999999999999999999999999999999999986 9999999998765332 457999999999999999999
Q ss_pred HHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCCC
Q 002833 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (875)
Q Consensus 265 tL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLS 344 (875)
|+.++....+... . +....+.++++.+||.+..++.+.+ ||
T Consensus 91 ~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LS 131 (235)
T cd03299 91 NIAYGLKKRKVDK----------K------------------------EIERKVLEIAEMLGIDHLLNRKPET-----LS 131 (235)
T ss_pred HHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCChhHHhcCccc-----CC
Confidence 9987643221100 0 0011345688899998888877754 99
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCeEEE
Q 002833 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVY 424 (875)
Q Consensus 345 GGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~iv~ 424 (875)
|||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++ +++.++||++++|++|++++
T Consensus 132 ~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~-~~~~~~~d~i~~l~~G~i~~ 210 (235)
T cd03299 132 GGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDF-EEAWALADKVAIMLNGKLIQ 210 (235)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999775588999988776 46788999999999999999
Q ss_pred ecChhhHH
Q 002833 425 QGPRDNVL 432 (875)
Q Consensus 425 ~Gp~~~~~ 432 (875)
.|+.+++.
T Consensus 211 ~~~~~~~~ 218 (235)
T cd03299 211 VGKPEEVF 218 (235)
T ss_pred ecCHHHHH
Confidence 99987653
No 145
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=3.5e-37 Score=331.01 Aligned_cols=204 Identities=24% Similarity=0.307 Sum_probs=170.5
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCC----------------ccCceE
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF----------------VPQRTC 247 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~----------------~~~~~~ 247 (875)
+++|+|+|+.|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.+
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (257)
T PRK10619 18 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRL 94 (257)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccccccccccccccchHHHHHhhce
Confidence 56999999999999999999999999999999999999886 99999999887421 113579
Q ss_pred EEEecCCCCCCCCCHHHHHHHhhh-hcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhC
Q 002833 248 AYISQHDLHHGEMTVRETLDFSGR-CLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILG 326 (875)
Q Consensus 248 ~yv~Q~d~~~~~lTV~EtL~f~a~-~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lg 326 (875)
+|++|++.+++.+||+||+.++.. ..+.. +. +....+.++++.+|
T Consensus 95 ~~v~q~~~l~~~~sv~enl~~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~g 140 (257)
T PRK10619 95 TMVFQHFNLWSHMTVLENVMEAPIQVLGLS----------KQ------------------------EARERAVKYLAKVG 140 (257)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHHhCCCC----------HH------------------------HHHHHHHHHHHHcC
Confidence 999999999999999999987532 11110 00 01123566889999
Q ss_pred CCccc-cccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCch
Q 002833 327 LDICA-DTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAP 405 (875)
Q Consensus 327 L~~~~-dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ 405 (875)
|.+.. +..+ +.|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++++ .++|+|++.|++ .
T Consensus 141 l~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsH~~-~ 213 (257)
T PRK10619 141 IDERAQGKYP-----VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHEM-G 213 (257)
T ss_pred CChhhhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-H
Confidence 97653 5444 45999999999999999999999999999999999999999999999976 488998887765 4
Q ss_pred hHHhhcCeEEEEeCCeEEEecChhhH
Q 002833 406 ETYDLFDDIILLSEGQIVYQGPRDNV 431 (875)
Q Consensus 406 ei~~lfD~vilL~~G~iv~~Gp~~~~ 431 (875)
++.++||+|++|++|++++.|+++++
T Consensus 214 ~~~~~~d~i~~l~~G~i~~~~~~~~~ 239 (257)
T PRK10619 214 FARHVSSHVIFLHQGKIEEEGAPEQL 239 (257)
T ss_pred HHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 77789999999999999999998876
No 146
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-37 Score=328.08 Aligned_cols=209 Identities=23% Similarity=0.322 Sum_probs=170.0
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC--CCCccEEEECCEeCCCCc---cCceEEEEecCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEFV---PQRTCAYISQHDLHHG 258 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~--~~~sG~I~~nG~~~~~~~---~~~~~~yv~Q~d~~~~ 258 (875)
+.+|+|+|++|++||+++|+|||||||||||++|+|.++|. ...+|+|.++|.++.... .++.++|++|++.+++
T Consensus 16 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~ 95 (250)
T PRK14247 16 VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIP 95 (250)
T ss_pred eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCC
Confidence 46999999999999999999999999999999999998741 124999999999875432 2457999999998899
Q ss_pred CCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCc----ccccc
Q 002833 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CADTM 334 (875)
Q Consensus 259 ~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~----~~dt~ 334 (875)
.+||.||+.+..+..+.... +. +....+.++++.+||.+ ..++.
T Consensus 96 ~~tv~enl~~~~~~~~~~~~--------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~~ 143 (250)
T PRK14247 96 NLSIFENVALGLKLNRLVKS--------KK------------------------ELQERVRWALEKAQLWDEVKDRLDAP 143 (250)
T ss_pred CCcHHHHHHHHHHhccccCC--------HH------------------------HHHHHHHHHHHHcCCCcchhhhhcCC
Confidence 99999999886532211000 00 01123566888899854 34544
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeE
Q 002833 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (875)
Q Consensus 335 vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~v 414 (875)
+ ..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ +.|+|++.|++. ++.++||++
T Consensus 144 ~-----~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~-~~~~~~d~i 215 (250)
T PRK14247 144 A-----GKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK--DMTIVLVTHFPQ-QAARISDYV 215 (250)
T ss_pred c-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHH-HHHHhcCEE
Confidence 4 45999999999999999999999999999999999999999999999863 688888877654 677899999
Q ss_pred EEEeCCeEEEecChhhHH
Q 002833 415 ILLSEGQIVYQGPRDNVL 432 (875)
Q Consensus 415 ilL~~G~iv~~Gp~~~~~ 432 (875)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 216 AFLYKGQIVEWGPTREVF 233 (250)
T ss_pred EEEECCeEEEECCHHHHH
Confidence 999999999999988763
No 147
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=6.1e-37 Score=325.88 Aligned_cols=213 Identities=24% Similarity=0.286 Sum_probs=170.4
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc--CCCCCCccEEEECCEeCCCCcc----CceEEEEecCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL--GKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHH 257 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l--~~~~~~sG~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~ 257 (875)
+.+|+|+|+.|++||+++|+|||||||||||++|+|++ +|+ +|+|.++|+++..... +..++|++|++.++
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (243)
T TIGR01978 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT---SGTILFKGQDLLELEPDERARAGLFLAFQYPEEI 89 (243)
T ss_pred EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---cceEEECCEecCCCCHHHhhccceEeeecccccc
Confidence 46999999999999999999999999999999999995 565 9999999998765332 23489999999999
Q ss_pred CCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCC-cccccccc
Q 002833 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVG 336 (875)
Q Consensus 258 ~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg 336 (875)
+.+||+|++.+......... .. ...+.+ +....++.+++.+||. ...++.++
T Consensus 90 ~~~t~~~~~~~~~~~~~~~~----------~~------~~~~~~-----------~~~~~~~~~l~~~~l~~~~~~~~~~ 142 (243)
T TIGR01978 90 PGVSNLEFLRSALNARRSAR----------GE------EPLDLL-----------DFLKLLKAKLALLGMDEEFLNRSVN 142 (243)
T ss_pred CCcCHHHHHHHHHHHhhccc----------cc------ccccHH-----------HHHHHHHHHHHHcCCchhhcccccc
Confidence 99999999988643211000 00 000000 0112356788999997 45665554
Q ss_pred CccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhh-cCeEE
Q 002833 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL-FDDII 415 (875)
Q Consensus 337 ~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~l-fD~vi 415 (875)
..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|++. ++... ||+++
T Consensus 143 ----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~vsH~~~-~~~~~~~d~i~ 216 (243)
T TIGR01978 143 ----EGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE-PDRSFLIITHYQR-LLNYIKPDYVH 216 (243)
T ss_pred ----cCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCcEEEEEEecHH-HHHhhcCCeEE
Confidence 14999999999999999999999999999999999999999999999975 5789998877764 66677 89999
Q ss_pred EEeCCeEEEecChhhHH
Q 002833 416 LLSEGQIVYQGPRDNVL 432 (875)
Q Consensus 416 lL~~G~iv~~Gp~~~~~ 432 (875)
+|++|++++.|+++++.
T Consensus 217 ~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 217 VLLDGRIVKSGDVELAK 233 (243)
T ss_pred EEeCCEEEEecCHHHhc
Confidence 99999999999987554
No 148
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-37 Score=332.17 Aligned_cols=209 Identities=22% Similarity=0.344 Sum_probs=173.8
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (875)
+.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++..++.+
T Consensus 20 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (265)
T PRK10253 20 YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA---HGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDI 96 (265)
T ss_pred EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCC
Confidence 46999999999999999999999999999999999999886 9999999998754322 35699999999999999
Q ss_pred CHHHHHHHhhhhc-CCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCcc
Q 002833 261 TVRETLDFSGRCL-GVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (875)
Q Consensus 261 TV~EtL~f~a~~~-~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (875)
||+||+.+..... ..... . .+ .....++++++.+||.+..++.+.
T Consensus 97 tv~~~~~~~~~~~~~~~~~-----------------~-~~-------------~~~~~~~~~l~~~~l~~~~~~~~~--- 142 (265)
T PRK10253 97 TVQELVARGRYPHQPLFTR-----------------W-RK-------------EDEEAVTKAMQATGITHLADQSVD--- 142 (265)
T ss_pred cHHHHHHhCcccccccccC-----------------C-CH-------------HHHHHHHHHHHHcCCHHHhcCCcc---
Confidence 9999998753110 00000 0 00 011235678899999877777665
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeC
Q 002833 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (875)
Q Consensus 340 ~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~ 419 (875)
.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++.++||++++|++
T Consensus 143 --~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~ 219 (265)
T PRK10253 143 --TLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALRE 219 (265)
T ss_pred --cCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence 599999999999999999999999999999999999999999999998655788888877654 78899999999999
Q ss_pred CeEEEecChhhHH
Q 002833 420 GQIVYQGPRDNVL 432 (875)
Q Consensus 420 G~iv~~Gp~~~~~ 432 (875)
|++++.|+++++.
T Consensus 220 G~i~~~g~~~~~~ 232 (265)
T PRK10253 220 GKIVAQGAPKEIV 232 (265)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999987764
No 149
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-37 Score=327.80 Aligned_cols=204 Identities=25% Similarity=0.328 Sum_probs=170.4
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCC------C---ccCceEEEEecCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE------F---VPQRTCAYISQHD 254 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~------~---~~~~~~~yv~Q~d 254 (875)
+.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.. . ..++.++|++|++
T Consensus 15 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~ 91 (242)
T PRK11124 15 HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQY 91 (242)
T ss_pred eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecccccccchhhHHHHHhheEEEecCc
Confidence 46999999999999999999999999999999999999886 9999999997631 1 1135699999999
Q ss_pred CCCCCCCHHHHHHHhh-hhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccc
Q 002833 255 LHHGEMTVRETLDFSG-RCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (875)
Q Consensus 255 ~~~~~lTV~EtL~f~a-~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 333 (875)
.+++.+||.||+.+.. ...+.. .. +....++.+++.+||++..++
T Consensus 92 ~~~~~~tv~e~i~~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gl~~~~~~ 137 (242)
T PRK11124 92 NLWPHLTVQQNLIEAPCRVLGLS----------KD------------------------QALARAEKLLERLRLKPYADR 137 (242)
T ss_pred cccCCCcHHHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCChhhhhC
Confidence 9999999999997532 111110 00 001235678899999887777
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCe
Q 002833 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (875)
Q Consensus 334 ~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~ 413 (875)
.++ .|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++.+ .+.|+|++.|++. ++.+++|+
T Consensus 138 ~~~-----~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~-~~~~~~d~ 210 (242)
T PRK11124 138 FPL-----HLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE-TGITQVIVTHEVE-VARKTASR 210 (242)
T ss_pred Chh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHH-HHHHhcCE
Confidence 765 4999999999999999999999999999999999999999999999875 4889888877664 67788999
Q ss_pred EEEEeCCeEEEecChhhH
Q 002833 414 IILLSEGQIVYQGPRDNV 431 (875)
Q Consensus 414 vilL~~G~iv~~Gp~~~~ 431 (875)
+++|.+|++++.|+.+++
T Consensus 211 i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 211 VVYMENGHIVEQGDASCF 228 (242)
T ss_pred EEEEECCEEEEeCCHHHh
Confidence 999999999999987754
No 150
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=2.9e-37 Score=322.22 Aligned_cols=200 Identities=30% Similarity=0.434 Sum_probs=162.6
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCC--CCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHH--GEMT 261 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~--~~lT 261 (875)
+++|+|+|+.|++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.. .++.++|++|++.+. +.+|
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~~~t 86 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLEK--ERKRIGYVPQRRSIDRDFPIS 86 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCccHHH--HHhheEEeccccccccCCCCc
Confidence 46999999999999999999999999999999999999986 9999999987642 346799999997653 3489
Q ss_pred HHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCC
Q 002833 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (875)
Q Consensus 262 V~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (875)
|+||+.+.......... .... +....++.+++.+||++..++.+++
T Consensus 87 v~e~l~~~~~~~~~~~~----------------~~~~--------------~~~~~~~~~l~~~~l~~~~~~~~~~---- 132 (213)
T cd03235 87 VRDVVLMGLYGHKGLFR----------------RLSK--------------ADKAKVDEALERVGLSELADRQIGE---- 132 (213)
T ss_pred HHHHHHhcccccccccc----------------CCCH--------------HHHHHHHHHHHHcCCHHHHhCCccc----
Confidence 99999886432100000 0000 0112356788999998877777664
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCe
Q 002833 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (875)
Q Consensus 342 gLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~ 421 (875)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|++. ++.++||++++|++|
T Consensus 133 -LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sH~~~-~~~~~~d~i~~l~~~- 208 (213)
T cd03235 133 -LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR-EGMTILVVTHDLG-LVLEYFDRVLLLNRT- 208 (213)
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhcCEEEEEcCc-
Confidence 999999999999999999999999999999999999999999999986 5889888877654 778899999999886
Q ss_pred EEEec
Q 002833 422 IVYQG 426 (875)
Q Consensus 422 iv~~G 426 (875)
+++.|
T Consensus 209 ~~~~g 213 (213)
T cd03235 209 VVASG 213 (213)
T ss_pred EeecC
Confidence 55554
No 151
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.6e-37 Score=331.63 Aligned_cols=209 Identities=22% Similarity=0.318 Sum_probs=173.1
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (875)
+++|+|+|+.|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|+..+++.+
T Consensus 24 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (265)
T PRK10575 24 RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGM 100 (265)
T ss_pred EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCc
Confidence 46999999999999999999999999999999999999886 9999999998754321 35699999998888999
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccC
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (875)
||.||+.+....... . . +. ... .....++.+++.+||.+..++.+++
T Consensus 101 tv~e~l~~~~~~~~~-~-~-------------~~-~~~--------------~~~~~~~~~l~~~~l~~~~~~~~~~--- 147 (265)
T PRK10575 101 TVRELVAIGRYPWHG-A-L-------------GR-FGA--------------ADREKVEEAISLVGLKPLAHRLVDS--- 147 (265)
T ss_pred cHHHHHHhCcccccc-c-c-------------cC-CCH--------------HHHHHHHHHHHHcCCHHHhcCCccc---
Confidence 999999875321000 0 0 00 000 0012356788999998877777764
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCC
Q 002833 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (875)
Q Consensus 341 rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G 420 (875)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++.++||+|++|++|
T Consensus 148 --LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~G 224 (265)
T PRK10575 148 --LSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRGG 224 (265)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999998655789888877654 778899999999999
Q ss_pred eEEEecChhhH
Q 002833 421 QIVYQGPRDNV 431 (875)
Q Consensus 421 ~iv~~Gp~~~~ 431 (875)
++++.|+.+++
T Consensus 225 ~i~~~~~~~~~ 235 (265)
T PRK10575 225 EMIAQGTPAEL 235 (265)
T ss_pred eEEEecCHHHh
Confidence 99999988765
No 152
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-37 Score=328.07 Aligned_cols=210 Identities=22% Similarity=0.314 Sum_probs=165.1
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC--CCCCCccEEEECCEeCCCC-----ccCceEEEEecCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~--~~~~~sG~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~ 256 (875)
+.+|+|+|+.|++||+++|+|||||||||||++|+|+.+ +....+|+|.++|+++... ..++.++|++|++.+
T Consensus 19 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 98 (253)
T PRK14242 19 FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNP 98 (253)
T ss_pred eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCC
Confidence 459999999999999999999999999999999999864 1001389999999987531 114579999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCcccccccc
Q 002833 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (875)
Q Consensus 257 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (875)
++ .||+||+.++....+.... . +....++.+++.+||.+......
T Consensus 99 ~~-~tv~enl~~~~~~~~~~~~---------~------------------------~~~~~~~~~l~~~~l~~~~~~~~- 143 (253)
T PRK14242 99 FP-KSIFENVAYGLRVNGVKDK---------A------------------------YLAERVERSLRHAALWDEVKDRL- 143 (253)
T ss_pred Cc-CcHHHHHHHHHHHcCCCCH---------H------------------------HHHHHHHHHHHHcCCchhhhHHh-
Confidence 87 5999999887543221000 0 00122456778888854221111
Q ss_pred CccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEE
Q 002833 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (875)
Q Consensus 337 ~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vil 416 (875)
+..++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|+|++.|++ .++.++||+|++
T Consensus 144 ~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tvii~tH~~-~~~~~~~d~v~~ 220 (253)
T PRK14242 144 HESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA--RYTIIIVTHNM-QQAARVSDVTAF 220 (253)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCeEEEEEecH-HHHHHhCCEEEE
Confidence 223456999999999999999999999999999999999999999999999953 67888887765 467789999999
Q ss_pred EeCCeEEEecChhhH
Q 002833 417 LSEGQIVYQGPRDNV 431 (875)
Q Consensus 417 L~~G~iv~~Gp~~~~ 431 (875)
|++|+++..|+++++
T Consensus 221 l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 221 FYMGKLIEVGPTEQI 235 (253)
T ss_pred EECCEEEEeCCHHHH
Confidence 999999999998765
No 153
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=8.9e-37 Score=318.76 Aligned_cols=199 Identities=22% Similarity=0.280 Sum_probs=167.6
Q ss_pred cccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc-cCceEEEEecCCCCCCCCCHHH
Q 002833 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-PQRTCAYISQHDLHHGEMTVRE 264 (875)
Q Consensus 186 IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E 264 (875)
+++|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+||.|
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~e 89 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQ 89 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChhccceEEEeccCccCCCCcHHH
Confidence 568999999999999999999999999999999999986 999999999875432 2467999999999999999999
Q ss_pred HHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCCC
Q 002833 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (875)
Q Consensus 265 tL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLS 344 (875)
|+.+...... ... . +....++++++.+||++..++.+. .||
T Consensus 90 n~~~~~~~~~-~~~--------~-------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS 130 (213)
T TIGR01277 90 NIGLGLHPGL-KLN--------A-------------------------EQQEKVVDAAQQVGIADYLDRLPE-----QLS 130 (213)
T ss_pred HHHhHhhccC-Ccc--------H-------------------------HHHHHHHHHHHHcCcHHHhhCCcc-----cCC
Confidence 9987532110 000 0 011234668899999887777765 499
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCeEEE
Q 002833 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVY 424 (875)
Q Consensus 345 GGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~iv~ 424 (875)
|||||||+||++|+.+|++++|||||+|||..++..+.+.|+++.+..+.|+|++.|++ .++.+++|++++|++|+++.
T Consensus 131 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~-~~~~~~~d~v~~l~~g~i~~ 209 (213)
T TIGR01277 131 GGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHL-SDARAIASQIAVVSQGKIKV 209 (213)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHhhcCeEEEEECCeEEE
Confidence 99999999999999999999999999999999999999999999865578888887765 46778999999999999998
Q ss_pred ecC
Q 002833 425 QGP 427 (875)
Q Consensus 425 ~Gp 427 (875)
.|.
T Consensus 210 ~~~ 212 (213)
T TIGR01277 210 VSD 212 (213)
T ss_pred ecC
Confidence 875
No 154
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=4e-37 Score=331.42 Aligned_cols=216 Identities=24% Similarity=0.304 Sum_probs=174.0
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc--------cCceEEEEecCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--------PQRTCAYISQHDL 255 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~--------~~~~~~yv~Q~d~ 255 (875)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|+...+|+|.++|+++.... .++.++|++|++.
T Consensus 17 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 96 (262)
T PRK09984 17 HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFN 96 (262)
T ss_pred eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccc
Confidence 56999999999999999999999999999999999999875223699999999875321 1356899999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccc
Q 002833 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335 (875)
Q Consensus 256 ~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v 335 (875)
+++.+||.||+.+......+ ...+. ..... .+....++++++.+||.+..|..+
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~---------~~~~~----~~~~~-------------~~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 97 LVNRLSVLENVLIGALGSTP---------FWRTC----FSWFT-------------REQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccCCcHHHHHHhhhccccc---------chhhh----ccccc-------------HHHHHHHHHHHHHcCCHHHHhCCc
Confidence 99999999999876421100 00000 00000 001224567899999988888777
Q ss_pred cCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEE
Q 002833 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (875)
Q Consensus 336 g~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vi 415 (875)
++ |||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++++..+.|+|+++|++. ++.++||+++
T Consensus 151 ~~-----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~ 224 (262)
T PRK09984 151 ST-----LSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIV 224 (262)
T ss_pred cc-----cCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 64 99999999999999999999999999999999999999999999998655789999877654 6788999999
Q ss_pred EEeCCeEEEecChhhH
Q 002833 416 LLSEGQIVYQGPRDNV 431 (875)
Q Consensus 416 lL~~G~iv~~Gp~~~~ 431 (875)
+|++|++++.|+++++
T Consensus 225 ~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 225 ALRQGHVFYDGSSQQF 240 (262)
T ss_pred EEECCEEEEeCCHHHh
Confidence 9999999999998753
No 155
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=5.3e-37 Score=331.52 Aligned_cols=207 Identities=22% Similarity=0.243 Sum_probs=171.1
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCC--CCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDL--HHG 258 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~--~~~ 258 (875)
+++|+|+|++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++|++|++. +++
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 102 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNP 102 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCchhhHhccEEEEecCchhhcCc
Confidence 46999999999999999999999999999999999999986 9999999998753211 246999999864 578
Q ss_pred CCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCC-ccccccccC
Q 002833 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVGD 337 (875)
Q Consensus 259 ~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~ 337 (875)
.+||.|++.+..+..... ... +....++.+++.+||. +..++.+.
T Consensus 103 ~~tv~~~l~~~~~~~~~~---------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~- 148 (267)
T PRK15112 103 RQRISQILDFPLRLNTDL---------EPE------------------------QREKQIIETLRQVGLLPDHASYYPH- 148 (267)
T ss_pred chhHHHHHHHHHHhccCC---------CHH------------------------HHHHHHHHHHHHcCCChHHHhcCch-
Confidence 889999998865432100 000 0112356789999994 55666554
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEE
Q 002833 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (875)
Q Consensus 338 ~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL 417 (875)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.++||++++|
T Consensus 149 ----~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l 223 (267)
T PRK15112 149 ----MLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHL-GMMKHISDQVLVM 223 (267)
T ss_pred ----hcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH-HHHHHhcCEEEEE
Confidence 59999999999999999999999999999999999999999999999875578888887765 4778899999999
Q ss_pred eCCeEEEecChhhHH
Q 002833 418 SEGQIVYQGPRDNVL 432 (875)
Q Consensus 418 ~~G~iv~~Gp~~~~~ 432 (875)
++|++++.|+.+++.
T Consensus 224 ~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 224 HQGEVVERGSTADVL 238 (267)
T ss_pred ECCEEEecCCHHHHh
Confidence 999999999887663
No 156
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.2e-37 Score=334.14 Aligned_cols=205 Identities=20% Similarity=0.309 Sum_probs=168.4
Q ss_pred ccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCC----C----ccCceEEEEecCCC-
Q 002833 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE----F----VPQRTCAYISQHDL- 255 (875)
Q Consensus 185 ~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~----~----~~~~~~~yv~Q~d~- 255 (875)
.+|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.. . ..++.++|++|++.
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~ 101 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE---TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEY 101 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEccccccccccHHHHhccEEEEEeCcch
Confidence 5999999999999999999999999999999999999886 9999999998642 1 12457999999863
Q ss_pred CCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCC-cccccc
Q 002833 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTM 334 (875)
Q Consensus 256 ~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~ 334 (875)
.+...||+||+.|.....+.. .. +....++.+++.++|. +..++.
T Consensus 102 ~~~~~tv~enl~~~~~~~~~~----------~~------------------------~~~~~~~~ll~~~~L~~~~~~~~ 147 (289)
T PRK13645 102 QLFQETIEKDIAFGPVNLGEN----------KQ------------------------EAYKKVPELLKLVQLPEDYVKRS 147 (289)
T ss_pred hhhhhHHHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCCChhHhcCC
Confidence 233469999998864322110 00 0011346688899994 566766
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeE
Q 002833 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (875)
Q Consensus 335 vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~v 414 (875)
++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..++|+|++.|++ +++.++||++
T Consensus 148 ~~-----~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~-~~~~~~~d~i 221 (289)
T PRK13645 148 PF-----ELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNM-DQVLRIADEV 221 (289)
T ss_pred hh-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEE
Confidence 65 49999999999999999999999999999999999999999999999865588999887765 4778899999
Q ss_pred EEEeCCeEEEecChhhHH
Q 002833 415 ILLSEGQIVYQGPRDNVL 432 (875)
Q Consensus 415 ilL~~G~iv~~Gp~~~~~ 432 (875)
++|++|++++.|+.+++.
T Consensus 222 ~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 222 IVMHEGKVISIGSPFEIF 239 (289)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
No 157
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=8.4e-37 Score=324.23 Aligned_cols=206 Identities=27% Similarity=0.407 Sum_probs=175.6
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc-CceEEEEecCCCCCCCCCH
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 262 (875)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+|+
T Consensus 13 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 89 (237)
T TIGR00968 13 FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTV 89 (237)
T ss_pred eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcCEEEEecChhhccCCcH
Confidence 46999999999999999999999999999999999999886 9999999998765333 3679999999999999999
Q ss_pred HHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCC
Q 002833 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (875)
Q Consensus 263 ~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (875)
.||+.+....++... . .....++++++.++|....++.++ .
T Consensus 90 ~enl~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~ 130 (237)
T TIGR00968 90 RDNIAFGLEIRKHPK----------A------------------------KIKARVEELLELVQLEGLGDRYPN-----Q 130 (237)
T ss_pred HHHHHhHHHhcCCCH----------H------------------------HHHHHHHHHHHHcCCHhHhhCChh-----h
Confidence 999988654321100 0 001134668889999877777765 4
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCeE
Q 002833 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (875)
Q Consensus 343 LSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~i 422 (875)
|||||+||++||++|+.+|++++|||||+|||..+...+.+.|+++++..++|+|+++|++. ++.++||++++|++|++
T Consensus 131 lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~g~i 209 (237)
T TIGR00968 131 LSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSNGKI 209 (237)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999987655789999888764 67889999999999999
Q ss_pred EEecChhhHH
Q 002833 423 VYQGPRDNVL 432 (875)
Q Consensus 423 v~~Gp~~~~~ 432 (875)
++.|+.+++.
T Consensus 210 ~~~~~~~~~~ 219 (237)
T TIGR00968 210 EQIGSPDEVY 219 (237)
T ss_pred EEecCHHHHH
Confidence 9999988763
No 158
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-37 Score=329.03 Aligned_cols=209 Identities=22% Similarity=0.348 Sum_probs=168.7
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC--CCCccEEEECCEeCC--CCc---cCceEEEEecCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELN--EFV---PQRTCAYISQHDLH 256 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~--~~~sG~I~~nG~~~~--~~~---~~~~~~yv~Q~d~~ 256 (875)
+++|+|+|++|++||+++|+|||||||||||++|+|.++|+ ...+|+|+++|+++. ... .++.++|++|++.+
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (253)
T PRK14267 17 NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNP 96 (253)
T ss_pred eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCcc
Confidence 46999999999999999999999999999999999998762 123899999999875 211 24579999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCc----ccc
Q 002833 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CAD 332 (875)
Q Consensus 257 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~----~~d 332 (875)
++.+||.||+.++...++.... .. +....++++++.+||.. ..+
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~~--------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~ 144 (253)
T PRK14267 97 FPHLTIYDNVAIGVKLNGLVKS--------KK------------------------ELDERVEWALKKAALWDEVKDRLN 144 (253)
T ss_pred CCCCcHHHHHHHHHHhcCccCC--------HH------------------------HHHHHHHHHHHHcCCccchhhhhc
Confidence 9999999999886532211000 00 00112456788888743 334
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcC
Q 002833 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (875)
Q Consensus 333 t~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD 412 (875)
+.+ +.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++.|++. ++.++||
T Consensus 145 ~~~-----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~-~~~~~~d 216 (253)
T PRK14267 145 DYP-----SNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--EYTIVLVTHSPA-QAARVSD 216 (253)
T ss_pred cCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--CCEEEEEECCHH-HHHhhCC
Confidence 444 46999999999999999999999999999999999999999999999964 578888877654 6788999
Q ss_pred eEEEEeCCeEEEecChhhHH
Q 002833 413 DIILLSEGQIVYQGPRDNVL 432 (875)
Q Consensus 413 ~vilL~~G~iv~~Gp~~~~~ 432 (875)
+|++|++|++++.|+++++.
T Consensus 217 ~i~~l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 217 YVAFLYLGKLIEVGPTRKVF 236 (253)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999987763
No 159
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-37 Score=326.54 Aligned_cols=221 Identities=25% Similarity=0.339 Sum_probs=196.3
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc-------CceEEEEecCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHDLH 256 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~-------~~~~~yv~Q~d~~ 256 (875)
.--++|+|+.|+.||+..|||-||||||||+++|.++.+|+ +|+|.++|.++..... ++.+++|+|+..+
T Consensus 41 vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept---~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaL 117 (386)
T COG4175 41 VVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIAKLSAAELRELRRKKISMVFQSFAL 117 (386)
T ss_pred EEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCC---CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhcc
Confidence 34689999999999999999999999999999999999997 9999999999865532 4679999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCcccccccc
Q 002833 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (875)
Q Consensus 257 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (875)
+|+.||.||..|+...+|.... | .+.+..+.|+..||+...+.++.
T Consensus 118 lPhrtVl~Nv~fGLev~Gv~~~----------e------------------------r~~~a~~~l~~VgL~~~~~~yp~ 163 (386)
T COG4175 118 LPHRTVLENVAFGLEVQGVPKA----------E------------------------REERALEALELVGLEGYADKYPN 163 (386)
T ss_pred ccchhHhhhhhcceeecCCCHH----------H------------------------HHHHHHHHHHHcCchhhhhcCcc
Confidence 9999999999999999887421 1 22346778999999999988776
Q ss_pred CccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEE
Q 002833 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (875)
Q Consensus 337 ~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vil 416 (875)
.||||+||||.+||||+.+|+||+||||+|.|||--+.++.+-|.++.+..++|+|+.+ |..+|.+++.|||.+
T Consensus 164 -----eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFit-HDLdEAlriG~rIai 237 (386)
T COG4175 164 -----ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFIT-HDLDEALRIGDRIAI 237 (386)
T ss_pred -----cccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEe-cCHHHHHhccceEEE
Confidence 49999999999999999999999999999999999999999999999998999999975 567799999999999
Q ss_pred EeCCeEEEecChhhHHHHHHHcCCCCCCCCCHHHHHHHh
Q 002833 417 LSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEV 455 (875)
Q Consensus 417 L~~G~iv~~Gp~~~~~~~F~~~Gf~~p~~~~~adfl~~v 455 (875)
|.+|+||..|++++++ ..|...-++||..++
T Consensus 238 mkdG~ivQ~Gtp~eIl--------~~PAndYV~~Fv~~v 268 (386)
T COG4175 238 MKDGEIVQVGTPEEIL--------LNPANDYVRDFVRNV 268 (386)
T ss_pred ecCCeEEEeCCHHHHH--------cCccHHHHHHHHhcC
Confidence 9999999999999996 356666677777665
No 160
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=1.5e-36 Score=362.29 Aligned_cols=208 Identities=23% Similarity=0.377 Sum_probs=172.4
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (875)
+++|+|+|++|+|||.++|+||||||||||+++|+|+++|+ +|+|.+||.++++... ++.++||+|++.+|+ .
T Consensus 356 ~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~-~ 431 (582)
T PRK11176 356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTLASLRNQVALVSQNVHLFN-D 431 (582)
T ss_pred CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCC---CceEEECCEEhhhcCHHHHHhhceEEccCceeec-c
Confidence 46999999999999999999999999999999999999997 9999999999877543 477999999988886 5
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccC
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (875)
|++|||.++.. ++.+.+++.+++...+. ++.++ .|++..||.+|+. .
T Consensus 432 Ti~~Ni~~~~~------------------------~~~~~~~i~~al~~~~l------~~~i~--~lp~Gldt~ig~~-g 478 (582)
T PRK11176 432 TIANNIAYART------------------------EQYSREQIEEAARMAYA------MDFIN--KMDNGLDTVIGEN-G 478 (582)
T ss_pred hHHHHHhcCCC------------------------CCCCHHHHHHHHHHhCc------HHHHH--hcccccCceeCCC-C
Confidence 99999987521 01122223333322221 22222 3667789999975 4
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCC
Q 002833 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (875)
Q Consensus 341 rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G 420 (875)
+.||||||||++|||+|+.+|++|+|||||++||+.++..+.+.|+++.+ ++|+|++.|++ +..+.||+|++|++|
T Consensus 479 ~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~--~~tvI~VtHr~--~~~~~~D~Ii~l~~g 554 (582)
T PRK11176 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRL--STIEKADEILVVEDG 554 (582)
T ss_pred CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC--CCEEEEEecch--HHHHhCCEEEEEECC
Confidence 67999999999999999999999999999999999999999999999853 68999988877 567889999999999
Q ss_pred eEEEecChhhHH
Q 002833 421 QIVYQGPRDNVL 432 (875)
Q Consensus 421 ~iv~~Gp~~~~~ 432 (875)
+++..|+++++.
T Consensus 555 ~i~e~g~~~~l~ 566 (582)
T PRK11176 555 EIVERGTHAELL 566 (582)
T ss_pred EEEEeCCHHHHH
Confidence 999999998875
No 161
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=3.9e-37 Score=320.96 Aligned_cols=195 Identities=25% Similarity=0.355 Sum_probs=163.6
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCC-----ccCceEEEEecCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLHHG 258 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~~~ 258 (875)
+.+|+++|+.++||++++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.++|++|+..+++
T Consensus 13 ~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (213)
T cd03262 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD---SGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFP 89 (213)
T ss_pred eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccchhHHHHHhcceEEecccccCC
Confidence 46999999999999999999999999999999999999886 99999999987421 12467999999999999
Q ss_pred CCCHHHHHHHhhh-hcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccC
Q 002833 259 EMTVRETLDFSGR-CLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (875)
Q Consensus 259 ~lTV~EtL~f~a~-~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (875)
.+||+||+.+... .++.. .. +....++.+++.+||++..++.+.
T Consensus 90 ~~t~~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~- 134 (213)
T cd03262 90 HLTVLENITLAPIKVKGMS----------KA------------------------EAEERALELLEKVGLADKADAYPA- 134 (213)
T ss_pred CCcHHHHHHhHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCCHhHhhhCcc-
Confidence 9999999988642 11100 00 011234668889999887777765
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEE
Q 002833 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (875)
Q Consensus 338 ~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL 417 (875)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.++||++++|
T Consensus 135 ----~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sh~~-~~~~~~~d~i~~l 208 (213)
T cd03262 135 ----QLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMVVVTHEM-GFAREVADRVIFM 208 (213)
T ss_pred ----ccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 4999999999999999999999999999999999999999999999986 478888877655 4778899999999
Q ss_pred eCCeE
Q 002833 418 SEGQI 422 (875)
Q Consensus 418 ~~G~i 422 (875)
++|++
T Consensus 209 ~~g~i 213 (213)
T cd03262 209 DDGRI 213 (213)
T ss_pred eCCcC
Confidence 99974
No 162
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-37 Score=329.56 Aligned_cols=208 Identities=25% Similarity=0.396 Sum_probs=172.4
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc---cCceEEEEecCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~l 260 (875)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|+...++.+
T Consensus 15 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (255)
T PRK11231 15 KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ---SGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGI 91 (255)
T ss_pred EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCc
Confidence 56999999999999999999999999999999999999886 999999999875432 135699999998888899
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccC
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (875)
||.||+.++...... .. +..+ ......++++++.+||.+..++.+++
T Consensus 92 tv~~~i~~~~~~~~~-----~~----------~~~~---------------~~~~~~~~~~l~~~~l~~~~~~~~~~--- 138 (255)
T PRK11231 92 TVRELVAYGRSPWLS-----LW----------GRLS---------------AEDNARVNQAMEQTRINHLADRRLTD--- 138 (255)
T ss_pred cHHHHHHhccchhhh-----hc----------cCCC---------------HHHHHHHHHHHHHcCCHHHHcCCccc---
Confidence 999999886321000 00 0000 00112356788899998888877654
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCC
Q 002833 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (875)
Q Consensus 341 rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G 420 (875)
|||||||||+||+||+.+|++|+|||||+|||+.+...+.+.|+++++ .+.|+|++.|++. ++.++||++++|++|
T Consensus 139 --LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~-~~~tiii~tH~~~-~~~~~~d~i~~l~~G 214 (255)
T PRK11231 139 --LSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT-QGKTVVTVLHDLN-QASRYCDHLVVLANG 214 (255)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEECCHH-HHHHhcCEEEEEECC
Confidence 999999999999999999999999999999999999999999999875 4789888877654 788999999999999
Q ss_pred eEEEecChhhH
Q 002833 421 QIVYQGPRDNV 431 (875)
Q Consensus 421 ~iv~~Gp~~~~ 431 (875)
+++..|+.+++
T Consensus 215 ~i~~~~~~~~~ 225 (255)
T PRK11231 215 HVMAQGTPEEV 225 (255)
T ss_pred eEEEEcCHHHh
Confidence 99999988765
No 163
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=1.8e-36 Score=325.06 Aligned_cols=207 Identities=23% Similarity=0.276 Sum_probs=168.6
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCC-CCccEEEECCEeCCCCcc-CceEEEEecCCC--CCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL-RASGKITYCGHELNEFVP-QRTCAYISQHDL--HHGE 259 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~-~~sG~I~~nG~~~~~~~~-~~~~~yv~Q~d~--~~~~ 259 (875)
+.+|+|+|++|++||+++|+|||||||||||++|+|+++|.. ..+|+|.++|+++..... ++.++|++|++. +.+.
T Consensus 16 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~ 95 (254)
T PRK10418 16 QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPL 95 (254)
T ss_pred cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCcc
Confidence 459999999999999999999999999999999999998711 139999999998754322 356999999974 4567
Q ss_pred CCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCc---ccccccc
Q 002833 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI---CADTMVG 336 (875)
Q Consensus 260 lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~---~~dt~vg 336 (875)
+|+.+++.+.++..+.. . ....+..+++.+||.+ ..++.++
T Consensus 96 ~~~~~~~~~~~~~~~~~----------~--------------------------~~~~~~~~l~~~~l~~~~~~~~~~~~ 139 (254)
T PRK10418 96 HTMHTHARETCLALGKP----------A--------------------------DDATLTAALEAVGLENAARVLKLYPF 139 (254)
T ss_pred ccHHHHHHHHHHHcCCC----------h--------------------------HHHHHHHHHHHcCCCChhhhhhcCCc
Confidence 89999886643322110 0 0123466888999976 3455554
Q ss_pred CccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEE
Q 002833 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (875)
Q Consensus 337 ~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vil 416 (875)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++.+++|++++
T Consensus 140 -----~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~ 213 (254)
T PRK10418 140 -----EMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAV 213 (254)
T ss_pred -----ccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEE
Confidence 599999999999999999999999999999999999999999999998755789988877654 67789999999
Q ss_pred EeCCeEEEecChhhHH
Q 002833 417 LSEGQIVYQGPRDNVL 432 (875)
Q Consensus 417 L~~G~iv~~Gp~~~~~ 432 (875)
|++|++++.|+.+++.
T Consensus 214 l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 214 MSHGRIVEQGDVETLF 229 (254)
T ss_pred EECCEEEEecCHHHHh
Confidence 9999999999988763
No 164
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1.3e-36 Score=370.66 Aligned_cols=206 Identities=25% Similarity=0.340 Sum_probs=171.4
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (875)
+++|+|+|++|+|||.++|+||||||||||+|+|+|+++|+ +|+|.+||.++.++.. ++.++||+|++.+|+ .
T Consensus 492 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-g 567 (710)
T TIGR03796 492 PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREVLANSVAMVDQDIFLFE-G 567 (710)
T ss_pred CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEeHHHCCHHHHHhheeEEecCChhhh-c
Confidence 46999999999999999999999999999999999999997 9999999999877643 578999999988885 5
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccC
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (875)
|++|||.++. |+.+.+++.+++...+. ++.+ -.++...||.+|+. .
T Consensus 568 Ti~eNi~l~~-------------------------~~~~~~~i~~al~~~~l------~~~i--~~lp~gl~t~i~e~-G 613 (710)
T TIGR03796 568 TVRDNLTLWD-------------------------PTIPDADLVRACKDAAI------HDVI--TSRPGGYDAELAEG-G 613 (710)
T ss_pred cHHHHhhCCC-------------------------CCCCHHHHHHHHHHhCC------HHHH--HhCcCcccceeccC-C
Confidence 9999998752 11222233333332221 1122 24666789999864 5
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCC
Q 002833 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (875)
Q Consensus 341 rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G 420 (875)
..||||||||++|||||+.+|++|+|||||++||+.++.+|.+.|++ .++|+|++.|++ ++...||+|++|++|
T Consensus 614 ~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~----~~~T~IiitHrl--~~i~~~D~Iivl~~G 687 (710)
T TIGR03796 614 ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----RGCTCIIVAHRL--STIRDCDEIIVLERG 687 (710)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh----cCCEEEEEecCH--HHHHhCCEEEEEeCC
Confidence 67999999999999999999999999999999999999999999986 378999988886 466789999999999
Q ss_pred eEEEecChhhHHH
Q 002833 421 QIVYQGPRDNVLE 433 (875)
Q Consensus 421 ~iv~~Gp~~~~~~ 433 (875)
+++..|+++++.+
T Consensus 688 ~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 688 KVVQRGTHEELWA 700 (710)
T ss_pred EEEEecCHHHHHH
Confidence 9999999998864
No 165
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-36 Score=329.25 Aligned_cols=216 Identities=20% Similarity=0.286 Sum_probs=176.5
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc---cCceEEEEecCCC-CCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDL-HHGE 259 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~~~yv~Q~d~-~~~~ 259 (875)
..+|+|||++|++||+++|+|+||||||||+++|+|.++|+ +|+|+++|+++.... .++.++|++|++. .++.
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (277)
T PRK13642 20 VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF---EGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVG 96 (277)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEECCcCCHHHHhcceEEEEECHHHhhcc
Confidence 35999999999999999999999999999999999999986 999999999875422 2467999999964 6778
Q ss_pred CCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCcc
Q 002833 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (875)
Q Consensus 260 lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (875)
.||.||+.+.....+.. +++ ....++++++.+||.+..++.++
T Consensus 97 ~tv~eni~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~--- 139 (277)
T PRK13642 97 ATVEDDVAFGMENQGIP----------REE------------------------MIKRVDEALLAVNMLDFKTREPA--- 139 (277)
T ss_pred CCHHHHHHhhHHHcCCC----------HHH------------------------HHHHHHHHHHHCCCHhHhhCCcc---
Confidence 89999998764322110 000 01235678899999887777665
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeC
Q 002833 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (875)
Q Consensus 340 ~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~ 419 (875)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|+.. ++. .+|++++|++
T Consensus 140 --~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~-~~~-~~d~i~~l~~ 215 (277)
T PRK13642 140 --RLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD-EAA-SSDRILVMKA 215 (277)
T ss_pred --cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHH-hCCEEEEEEC
Confidence 499999999999999999999999999999999999999999999998755889999887765 454 6999999999
Q ss_pred CeEEEecChhhHHH---HHHHcCCCCC
Q 002833 420 GQIVYQGPRDNVLE---FFEHMGFKCP 443 (875)
Q Consensus 420 G~iv~~Gp~~~~~~---~F~~~Gf~~p 443 (875)
|+++..|+++++.. .+...+..+|
T Consensus 216 G~i~~~g~~~~~~~~~~~~~~~~~~~~ 242 (277)
T PRK13642 216 GEIIKEAAPSELFATSEDMVEIGLDVP 242 (277)
T ss_pred CEEEEeCCHHHHhcCHHHHHHCCCCCC
Confidence 99999999887642 2333455544
No 166
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=2.5e-36 Score=367.17 Aligned_cols=208 Identities=26% Similarity=0.454 Sum_probs=174.9
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (875)
+++|+|+|++|+|||.++|+||||||||||+|+|+|+++|+ +|+|.+||+++.+... ++.++||+|++.+|+.
T Consensus 478 ~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~- 553 (694)
T TIGR03375 478 TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYG- 553 (694)
T ss_pred ccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhccEEECCChhhhhh-
Confidence 45999999999999999999999999999999999999997 9999999999887654 5789999999888874
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccC
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (875)
|++|||.++. |+.+.+++.+++...+. ++.+ -.|++..||.+|+. .
T Consensus 554 TI~eNi~~~~-------------------------~~~~~~~i~~a~~~~~l------~~~i--~~lp~gl~T~i~e~-G 599 (694)
T TIGR03375 554 TLRDNIALGA-------------------------PYADDEEILRAAELAGV------TEFV--RRHPDGLDMQIGER-G 599 (694)
T ss_pred hHHHHHhCCC-------------------------CCCCHHHHHHHHHHcCh------HHHH--HhCcccccceecCC-C
Confidence 9999998752 11222333344333221 1222 24677889999964 5
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCC
Q 002833 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (875)
Q Consensus 341 rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G 420 (875)
..||||||||++|||||+.+|++++|||||++||+.+..+|.+.|+++.+ ++|+|++.|++ ++.+.||+|++|++|
T Consensus 600 ~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~iiItHrl--~~~~~~D~iivl~~G 675 (694)
T TIGR03375 600 RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA--GKTLVLVTHRT--SLLDLVDRIIVMDNG 675 (694)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCH--HHHHhCCEEEEEeCC
Confidence 66999999999999999999999999999999999999999999999864 78999988887 467889999999999
Q ss_pred eEEEecChhhHHH
Q 002833 421 QIVYQGPRDNVLE 433 (875)
Q Consensus 421 ~iv~~Gp~~~~~~ 433 (875)
+++++|+++++.+
T Consensus 676 ~i~e~G~~~eLl~ 688 (694)
T TIGR03375 676 RIVADGPKDQVLE 688 (694)
T ss_pred EEEeeCCHHHHHH
Confidence 9999999998864
No 167
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=1.3e-36 Score=326.31 Aligned_cols=208 Identities=27% Similarity=0.417 Sum_probs=172.2
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (875)
+.+|+|+|+.|++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|+..+++.+
T Consensus 14 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (256)
T TIGR03873 14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPL 90 (256)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEEcccCCHHHHhhheEEecccCccCCCC
Confidence 46999999999999999999999999999999999999986 9999999998765422 34689999998778889
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccC
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (875)
||+||+.+...... ... . .+.. +....++++++.+||.+..++.+++
T Consensus 91 tv~e~l~~~~~~~~---------~~~------~-~~~~--------------~~~~~~~~~l~~~~l~~~~~~~~~~--- 137 (256)
T TIGR03873 91 TVRDVVALGRIPHR---------SLW------A-GDSP--------------HDAAVVDRALARTELSHLADRDMST--- 137 (256)
T ss_pred CHHHHHHhcchhhh---------hhc------c-CCCH--------------HHHHHHHHHHHHcCcHhhhcCCccc---
Confidence 99999987521000 000 0 0000 0112356788999998877777664
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCC
Q 002833 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (875)
Q Consensus 341 rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G 420 (875)
|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++.+ .+.|+|++.|++. ++.++||+|++|++|
T Consensus 138 --LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l~~G 213 (256)
T TIGR03873 138 --LSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA-TGVTVVAALHDLN-LAASYCDHVVVLDGG 213 (256)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999999999975 4788888877765 777899999999999
Q ss_pred eEEEecChhhH
Q 002833 421 QIVYQGPRDNV 431 (875)
Q Consensus 421 ~iv~~Gp~~~~ 431 (875)
+++..|+.+++
T Consensus 214 ~i~~~g~~~~~ 224 (256)
T TIGR03873 214 RVVAAGPPREV 224 (256)
T ss_pred CEEEecCHHHh
Confidence 99999998765
No 168
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-36 Score=324.21 Aligned_cols=206 Identities=18% Similarity=0.318 Sum_probs=166.9
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC--CCCccEEEECCEeCCCCc-----cCceEEEEecCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEFV-----PQRTCAYISQHDLH 256 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~--~~~sG~I~~nG~~~~~~~-----~~~~~~yv~Q~d~~ 256 (875)
+.+|+|+|++|++||+++|+|||||||||||++|+|..+|. ...+|+|.++|+++.... .++.++|++|++.+
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (251)
T PRK14270 17 KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNP 96 (251)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCc
Confidence 46999999999999999999999999999999999998751 124899999999875321 14569999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCC----cccc
Q 002833 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICAD 332 (875)
Q Consensus 257 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~----~~~d 332 (875)
++ +||+||+.|.....+.... . +....++.+++.+||. +..+
T Consensus 97 ~~-~tv~enl~~~~~~~~~~~~---------~------------------------~~~~~~~~~l~~~~l~~~~~~~~~ 142 (251)
T PRK14270 97 FP-MSIYDNVAYGPRIHGIKDK---------K------------------------ELDKIVEWALKKAALWDEVKDDLK 142 (251)
T ss_pred CC-CcHHHHHHhHHHhcCCCcH---------H------------------------HHHHHHHHHHHHcCCchhhhhHhh
Confidence 87 8999999886543221000 0 0011245577888874 2344
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcC
Q 002833 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (875)
Q Consensus 333 t~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD 412 (875)
..+ +.|||||||||+||++|+.+|++++|||||+|||+.++.++.+.|+++.+ +.|+|++.|++ .++.++||
T Consensus 143 ~~~-----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~-~~~~~~~d 214 (251)
T PRK14270 143 KSA-----LKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--EYTIVIVTHNM-QQASRVSD 214 (251)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEEcCH-HHHHHhcC
Confidence 444 46999999999999999999999999999999999999999999999875 47888887765 47788999
Q ss_pred eEEEEeCCeEEEecChhhH
Q 002833 413 DIILLSEGQIVYQGPRDNV 431 (875)
Q Consensus 413 ~vilL~~G~iv~~Gp~~~~ 431 (875)
++++|++|++++.|+.+++
T Consensus 215 ~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 215 YTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred EEEEEECCeEEEeCCHHHH
Confidence 9999999999999999876
No 169
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=2.3e-36 Score=368.19 Aligned_cols=208 Identities=27% Similarity=0.388 Sum_probs=172.5
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (875)
+++|+|+|++|+||+.++|+||||||||||+|+|+|+++|+ +|+|++||.++.+... ++.++||+|++.+|+.
T Consensus 487 ~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g- 562 (708)
T TIGR01193 487 SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSG- 562 (708)
T ss_pred CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCC---CcEEEECCEEHHHcCHHHHHHheEEEecCceehhH-
Confidence 46999999999999999999999999999999999999997 9999999999877653 5789999999888765
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccC
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (875)
||+|||.++.+ ++.+.+++.+++...+. ++.+ -.|+...||.+|+ ..
T Consensus 563 TI~eNi~l~~~------------------------~~~~~~~i~~a~~~a~l------~~~i--~~lp~gldt~i~e-~G 609 (708)
T TIGR01193 563 SILENLLLGAK------------------------ENVSQDEIWAACEIAEI------KDDI--ENMPLGYQTELSE-EG 609 (708)
T ss_pred HHHHHHhccCC------------------------CCCCHHHHHHHHHHhCC------HHHH--HhcccccCcEecC-CC
Confidence 99999988631 11122233333332221 1222 2466778999986 45
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCC
Q 002833 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (875)
Q Consensus 341 rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G 420 (875)
..||||||||++|||||+.+|++|+|||||++||+.+...+.+.|+++ .++|+|++.|+++ +.+.||+|++|++|
T Consensus 610 ~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~---~~~T~IiitHr~~--~~~~~D~i~~l~~G 684 (708)
T TIGR01193 610 SSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL---QDKTIIFVAHRLS--VAKQSDKIIVLDHG 684 (708)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh---cCCEEEEEecchH--HHHcCCEEEEEECC
Confidence 679999999999999999999999999999999999999999999985 3689988888774 67889999999999
Q ss_pred eEEEecChhhHHH
Q 002833 421 QIVYQGPRDNVLE 433 (875)
Q Consensus 421 ~iv~~Gp~~~~~~ 433 (875)
+++..|+++++.+
T Consensus 685 ~i~~~G~~~~L~~ 697 (708)
T TIGR01193 685 KIIEQGSHDELLD 697 (708)
T ss_pred EEEEECCHHHHHh
Confidence 9999999998754
No 170
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-36 Score=323.41 Aligned_cols=207 Identities=21% Similarity=0.286 Sum_probs=167.7
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC--CCCCCccEEEECCEeCCCC-----ccCceEEEEecCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~--~~~~~sG~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~ 256 (875)
+.+|+|+|+.|++||+++|+|||||||||||++|+|+++ |....+|+|.++|+++... ..++.++|++|+..+
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14256 17 NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNP 96 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCC
Confidence 469999999999999999999999999999999999986 3112389999999987532 124679999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCc----ccc
Q 002833 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CAD 332 (875)
Q Consensus 257 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~----~~d 332 (875)
++.+||+||+.+..+..+... .. +....++++++.+||.. ..+
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~---------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~ 143 (252)
T PRK14256 97 FPAMSIYDNVIAGYKLNGRVN---------RS------------------------EADEIVESSLKRVALWDEVKDRLK 143 (252)
T ss_pred CCcCcHHHHHHhHHHhcCCCC---------HH------------------------HHHHHHHHHHHHcCCchhhhHHhh
Confidence 999999999987643221000 00 00113466788888854 233
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcC
Q 002833 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (875)
Q Consensus 333 t~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD 412 (875)
+. ++.|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|+++++ +.|+|++.|++ .++.++||
T Consensus 144 ~~-----~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tiiivsH~~-~~~~~~~d 215 (252)
T PRK14256 144 SN-----AMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE--KYTIIIVTHNM-QQAARVSD 215 (252)
T ss_pred CC-----cCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCcEEEEECCH-HHHHhhCC
Confidence 33 446999999999999999999999999999999999999999999999975 57888887765 47788999
Q ss_pred eEEEEeCCeEEEecChhhH
Q 002833 413 DIILLSEGQIVYQGPRDNV 431 (875)
Q Consensus 413 ~vilL~~G~iv~~Gp~~~~ 431 (875)
++++|++|+++..|+++++
T Consensus 216 ~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14256 216 YTAFFYMGDLVECGETKKI 234 (252)
T ss_pred EEEEEECCEEEEeCCHHHH
Confidence 9999999999999998876
No 171
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-36 Score=323.38 Aligned_cols=206 Identities=21% Similarity=0.309 Sum_probs=165.2
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC--CCCCCccEEEECCEeCCCC-----ccCceEEEEecCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~--~~~~~sG~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~ 256 (875)
+.+|+|+|++|++||+++|+|||||||||||++|+|..+ |+...+|+|.++|+++... ..++.++|++|+..+
T Consensus 18 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 97 (252)
T PRK14239 18 KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNP 97 (252)
T ss_pred eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCcc
Confidence 469999999999999999999999999999999999854 4222389999999987431 124579999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCc----ccc
Q 002833 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CAD 332 (875)
Q Consensus 257 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~----~~d 332 (875)
++ +||+||+.+.....+.... . .....++++++.+|+.. ..+
T Consensus 98 ~~-~tv~enl~~~~~~~~~~~~-------------------~--------------~~~~~~~~~l~~~~l~~~~~~~~~ 143 (252)
T PRK14239 98 FP-MSIYENVVYGLRLKGIKDK-------------------Q--------------VLDEAVEKSLKGASIWDEVKDRLH 143 (252)
T ss_pred Cc-CcHHHHHHHHHHHcCCCcH-------------------H--------------HHHHHHHHHHHHcCCchhHHHHHh
Confidence 87 8999999886433221000 0 00112455777887743 233
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcC
Q 002833 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (875)
Q Consensus 333 t~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD 412 (875)
.. ++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|+|++.|++ +++.++||
T Consensus 144 ~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~-~~~~~~~d 215 (252)
T PRK14239 144 DS-----ALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD--DYTMLLVTRSM-QQASRISD 215 (252)
T ss_pred cC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh--CCeEEEEECCH-HHHHHhCC
Confidence 33 446999999999999999999999999999999999999999999999864 57888887765 47888999
Q ss_pred eEEEEeCCeEEEecChhhH
Q 002833 413 DIILLSEGQIVYQGPRDNV 431 (875)
Q Consensus 413 ~vilL~~G~iv~~Gp~~~~ 431 (875)
++++|++|++++.|+.+++
T Consensus 216 ~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 216 RTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred EEEEEECCEEEEeCCHHHH
Confidence 9999999999999998876
No 172
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-36 Score=337.58 Aligned_cols=215 Identities=17% Similarity=0.192 Sum_probs=170.8
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCC-CCccEEEECCEeCCCCcc-------CceEEEEecCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL-RASGKITYCGHELNEFVP-------QRTCAYISQHDL 255 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~-~~sG~I~~nG~~~~~~~~-------~~~~~yv~Q~d~ 255 (875)
..+|+|||+.|++||+++|+|+||||||||+++|+|++++.. ..+|+|.|+|+++..... ++.++||+|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~ 99 (330)
T PRK15093 20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcc
Confidence 569999999999999999999999999999999999987421 248999999998865432 246999999975
Q ss_pred --CCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCcc---
Q 002833 256 --HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDIC--- 330 (875)
Q Consensus 256 --~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~--- 330 (875)
+.|.+||.+++.+.......... . .... .+....+.++|+.+||.+.
T Consensus 100 ~~l~p~~tv~~~l~~~~~~~~~~~~------~---------~~~~-------------~~~~~~~~~~L~~~gL~~~~~~ 151 (330)
T PRK15093 100 SCLDPSERVGRQLMQNIPGWTYKGR------W---------WQRF-------------GWRKRRAIELLHRVGIKDHKDA 151 (330)
T ss_pred hhcCccccHHHHHHHHHHhhhcccc------c---------cccH-------------HHHHHHHHHHHHHCCCCChHHH
Confidence 67889999999764321100000 0 0000 0011235678999999753
Q ss_pred ccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhh
Q 002833 331 ADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL 410 (875)
Q Consensus 331 ~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~l 410 (875)
.+.. +..|||||||||+||+||+.+|++|++||||+|||+.++.++.+.|+++.++.+.|+|+++|+ ...+.++
T Consensus 152 ~~~~-----p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHd-l~~v~~~ 225 (330)
T PRK15093 152 MRSF-----PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHD-LQMLSQW 225 (330)
T ss_pred HhCC-----chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECC-HHHHHHh
Confidence 3444 456999999999999999999999999999999999999999999999987668898887665 4578899
Q ss_pred cCeEEEEeCCeEEEecChhhHH
Q 002833 411 FDDIILLSEGQIVYQGPRDNVL 432 (875)
Q Consensus 411 fD~vilL~~G~iv~~Gp~~~~~ 432 (875)
+|+|++|++|+|++.|+.+++.
T Consensus 226 ~dri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 226 ADKINVLYCGQTVETAPSKELV 247 (330)
T ss_pred CCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999988763
No 173
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=2.2e-36 Score=325.04 Aligned_cols=206 Identities=22% Similarity=0.353 Sum_probs=168.6
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEe-----CCCCcc-------CceEEEEe
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE-----LNEFVP-------QRTCAYIS 251 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~-----~~~~~~-------~~~~~yv~ 251 (875)
+.+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.+ +..... ++.++|++
T Consensus 19 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~ 95 (258)
T PRK11701 19 RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVH 95 (258)
T ss_pred ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCccccccccccCCHHHHHHHhhcceEEEe
Confidence 46999999999999999999999999999999999999986 9999999987 554321 34699999
Q ss_pred cCCC--CCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCc
Q 002833 252 QHDL--HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI 329 (875)
Q Consensus 252 Q~d~--~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~ 329 (875)
|+.. +++.+|+.||+.+.....+... .. +....++++++.+|+.+
T Consensus 96 q~~~~~~~~~~~~~~~i~~~~~~~~~~~---------~~------------------------~~~~~~~~~l~~~~l~~ 142 (258)
T PRK11701 96 QHPRDGLRMQVSAGGNIGERLMAVGARH---------YG------------------------DIRATAGDWLERVEIDA 142 (258)
T ss_pred eCcccccCccccHHHHHHHHHHHhccCc---------HH------------------------HHHHHHHHHHHHcCCCh
Confidence 9963 5778899999976432111000 00 00123467889999974
Q ss_pred -cccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHH
Q 002833 330 -CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETY 408 (875)
Q Consensus 330 -~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~ 408 (875)
..++.++ .|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++++..+.|+|++.|++ .++.
T Consensus 143 ~~~~~~~~-----~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~-~~~~ 216 (258)
T PRK11701 143 ARIDDLPT-----TFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL-AVAR 216 (258)
T ss_pred hHHhCCCc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHH
Confidence 5666655 49999999999999999999999999999999999999999999998875578888887665 4677
Q ss_pred hhcCeEEEEeCCeEEEecChhhH
Q 002833 409 DLFDDIILLSEGQIVYQGPRDNV 431 (875)
Q Consensus 409 ~lfD~vilL~~G~iv~~Gp~~~~ 431 (875)
+++|++++|++|++++.|+++++
T Consensus 217 ~~~d~i~~l~~g~i~~~~~~~~~ 239 (258)
T PRK11701 217 LLAHRLLVMKQGRVVESGLTDQV 239 (258)
T ss_pred HhcCEEEEEECCEEEEeCCHHHH
Confidence 88999999999999999998876
No 174
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-36 Score=324.28 Aligned_cols=210 Identities=19% Similarity=0.268 Sum_probs=166.4
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc---CCCCCCccEEEECCEeCCCCc-----cCceEEEEecCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL---GKDLRASGKITYCGHELNEFV-----PQRTCAYISQHDL 255 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l---~~~~~~sG~I~~nG~~~~~~~-----~~~~~~yv~Q~d~ 255 (875)
+++|+|+|+.|++||+++|+|||||||||||++|+|+. ++. ..+|+|.++|+++.... .++.++|++|++.
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 94 (250)
T PRK14245 16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT-RLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPN 94 (250)
T ss_pred EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCC-CCceEEEECCEecccccccHHHHhhheEEEecCCc
Confidence 46999999999999999999999999999999999973 331 13899999999875421 1356999999988
Q ss_pred CCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccc
Q 002833 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335 (875)
Q Consensus 256 ~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v 335 (875)
+++ .||.||+.++.+.++.... + .....++++++.+||.+......
T Consensus 95 ~~~-~tv~~nl~~~~~~~~~~~~----------~-----------------------~~~~~~~~~l~~~~l~~~~~~~~ 140 (250)
T PRK14245 95 PFP-KSIFENVAYGLRVNGVKDN----------A-----------------------FIRQRVEETLKGAALWDEVKDKL 140 (250)
T ss_pred cCc-ccHHHHHHHHHHHcCCCcH----------H-----------------------HHHHHHHHHHHHcCCCcchhhhh
Confidence 887 6999999886543221000 0 00123466788899864321111
Q ss_pred cCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEE
Q 002833 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (875)
Q Consensus 336 g~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vi 415 (875)
+..++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|+|++.|++. ++.++||+++
T Consensus 141 -~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivtH~~~-~~~~~~d~v~ 216 (250)
T PRK14245 141 -KESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKK--DYTIVIVTHNMQ-QAARVSDKTA 216 (250)
T ss_pred -hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCHH-HHHhhCCEEE
Confidence 123446999999999999999999999999999999999999999999999853 688888877654 6778999999
Q ss_pred EEeCCeEEEecChhhHH
Q 002833 416 LLSEGQIVYQGPRDNVL 432 (875)
Q Consensus 416 lL~~G~iv~~Gp~~~~~ 432 (875)
+|++|++++.|+++++.
T Consensus 217 ~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 217 FFYMGEMVEYDDTKKIF 233 (250)
T ss_pred EEECCEEEEECCHHHHh
Confidence 99999999999998874
No 175
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-36 Score=326.65 Aligned_cols=207 Identities=21% Similarity=0.320 Sum_probs=166.6
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC--CCCccEEEECCEeCCCC-----ccCceEEEEecCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~--~~~sG~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~ 256 (875)
+.+|+|+|+.|+||++++|+|||||||||||++|+|.++|. ...+|+|+++|+++... ..++.++|++|++..
T Consensus 32 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 111 (267)
T PRK14235 32 KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNP 111 (267)
T ss_pred EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCC
Confidence 45999999999999999999999999999999999998741 01389999999987531 124579999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCc----ccc
Q 002833 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CAD 332 (875)
Q Consensus 257 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~----~~d 332 (875)
++. ||.||+.++.+.++... .+. +....++++++.+||.+ ..+
T Consensus 112 ~~~-tv~enl~~~~~~~~~~~--------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~ 158 (267)
T PRK14235 112 FPK-SIYENVAYGPRIHGLAR--------SKA------------------------ELDEIVETSLRKAGLWEEVKDRLH 158 (267)
T ss_pred CCC-cHHHHHHHHHHhccccc--------chH------------------------HHHHHHHHHHHHcCCchhhhHHhh
Confidence 875 99999998754322100 000 00123466788889864 233
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcC
Q 002833 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (875)
Q Consensus 333 t~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD 412 (875)
+. ++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|++.|++ .++.++||
T Consensus 159 ~~-----~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~--~~tiiivtH~~-~~~~~~~d 230 (267)
T PRK14235 159 EP-----GTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ--NYTIVIVTHSM-QQAARVSQ 230 (267)
T ss_pred CC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc--CCeEEEEEcCH-HHHHhhCC
Confidence 33 446999999999999999999999999999999999999999999999964 57888887765 47778999
Q ss_pred eEEEEeCCeEEEecChhhH
Q 002833 413 DIILLSEGQIVYQGPRDNV 431 (875)
Q Consensus 413 ~vilL~~G~iv~~Gp~~~~ 431 (875)
++++|++|+++.+|+.+++
T Consensus 231 ~v~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14235 231 RTAFFHLGNLVEVGDTEKM 249 (267)
T ss_pred EEEEEECCEEEEeCCHHHH
Confidence 9999999999999998776
No 176
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=5.9e-36 Score=357.76 Aligned_cols=206 Identities=24% Similarity=0.320 Sum_probs=171.3
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (875)
+++|+|+|++|+|||.++|+|+||||||||+|+|+|+++|+ +|+|.+||+++++..+ ++.++||+|++.+|+.
T Consensus 354 ~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~- 429 (592)
T PRK10790 354 NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD- 429 (592)
T ss_pred CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEhhhCCHHHHHhheEEEccCCccccc-
Confidence 35999999999999999999999999999999999999997 9999999999887644 5789999999998886
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccC
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (875)
|++|||.++.. . +.+++.+++...+ .++.++ .|+...||.+|+. .
T Consensus 430 Ti~~NI~~~~~---~-----------------------~d~~i~~a~~~~g------l~~~i~--~lp~Gldt~i~e~-g 474 (592)
T PRK10790 430 TFLANVTLGRD---I-----------------------SEEQVWQALETVQ------LAELAR--SLPDGLYTPLGEQ-G 474 (592)
T ss_pred hHHHHHHhCCC---C-----------------------CHHHHHHHHHHcC------cHHHHH--hccccccccccCC-C
Confidence 99999988621 0 0111222222111 112222 2566789999873 4
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCC
Q 002833 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (875)
Q Consensus 341 rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G 420 (875)
..||||||||++|||||+.+|++|+|||||++||+.++.+|.+.|+++.+ ++|+|+..|++ +....||+|++|++|
T Consensus 475 ~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~--~~tvIivtHr~--~~l~~~D~ii~l~~G 550 (592)
T PRK10790 475 NNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE--HTTLVVIAHRL--STIVEADTILVLHRG 550 (592)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEecch--HHHHhCCEEEEEECC
Confidence 56999999999999999999999999999999999999999999999864 68999988887 467789999999999
Q ss_pred eEEEecChhhHH
Q 002833 421 QIVYQGPRDNVL 432 (875)
Q Consensus 421 ~iv~~Gp~~~~~ 432 (875)
+++..|+++++.
T Consensus 551 ~i~~~G~~~~L~ 562 (592)
T PRK10790 551 QAVEQGTHQQLL 562 (592)
T ss_pred EEEEEcCHHHHH
Confidence 999999999885
No 177
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-36 Score=322.77 Aligned_cols=233 Identities=24% Similarity=0.311 Sum_probs=188.0
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC-C-CCCCccEEEECCEeCCCCcc-------CceEEEEecC
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG-K-DLRASGKITYCGHELNEFVP-------QRTCAYISQH 253 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~-~-~~~~sG~I~~nG~~~~~~~~-------~~~~~yv~Q~ 253 (875)
...+++||||.|++||+++|+|.|||||||+.++|.|+++ + ....+|+|.|+|+++-.+.. .+.++||+|+
T Consensus 17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96 (316)
T ss_pred cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence 4579999999999999999999999999999999999997 4 33467999999998754432 3579999999
Q ss_pred C--CCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccc
Q 002833 254 D--LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICA 331 (875)
Q Consensus 254 d--~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~ 331 (875)
+ .+.|.+||.+.+.-..+.+.... ++ .+....+.++|+.+||++-.
T Consensus 97 p~~sLnPv~~Ig~Qi~E~l~~h~~~~--------~~------------------------~ea~~~a~~~L~~Vgi~~~~ 144 (316)
T COG0444 97 PMTSLNPVMTIGDQIAEVLRLHGKGL--------SK------------------------KEAKERAIELLELVGIPDPE 144 (316)
T ss_pred chhhcCChhhHHHHHHHHHHHhhcch--------hh------------------------HHHHHHHHHHHHHcCCCCHH
Confidence 5 67899999988876654332100 01 11233466789999998643
Q ss_pred cccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhc
Q 002833 332 DTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF 411 (875)
Q Consensus 332 dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lf 411 (875)
. +-+.++..|||||||||.||.||+.+|++|+.|||||+||...+.+|+++|+++.++.|.++|+.+| +..-+.++|
T Consensus 145 ~--~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITH-Dl~vva~~a 221 (316)
T COG0444 145 R--RLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITH-DLGVVAEIA 221 (316)
T ss_pred H--HHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeC-CHHHHHHhc
Confidence 2 3345677899999999999999999999999999999999999999999999999988888888655 556789999
Q ss_pred CeEEEEeCCeEEEecChhhHHHHHHHcCCCCCCCCCHHHHHHHhccc
Q 002833 412 DDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSK 458 (875)
Q Consensus 412 D~vilL~~G~iv~~Gp~~~~~~~F~~~Gf~~p~~~~~adfl~~v~s~ 458 (875)
|+|+||+.|+||+.|+.+++ |..|.+.-+-..+..+...
T Consensus 222 Dri~VMYaG~iVE~g~~~~i--------~~~P~HPYT~~Ll~s~P~~ 260 (316)
T COG0444 222 DRVAVMYAGRIVEEGPVEEI--------FKNPKHPYTRGLLNSLPRL 260 (316)
T ss_pred ceEEEEECcEEEEeCCHHHH--------hcCCCChHHHHHHHhCccc
Confidence 99999999999999999987 4567766565555555443
No 178
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-36 Score=325.35 Aligned_cols=208 Identities=22% Similarity=0.332 Sum_probs=167.7
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCC--CCccEEEECCEeCCCC-----ccCceEEEEecCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL--RASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~--~~sG~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~ 256 (875)
+++|+|+|+.|++||+++|+|||||||||||++|+|.++|.- ..+|+|.++|+++... ..++.++|++|+..+
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (258)
T PRK14241 17 FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNP 96 (258)
T ss_pred EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEcccccc
Confidence 469999999999999999999999999999999999987410 1399999999987421 124579999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCC----cccc
Q 002833 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICAD 332 (875)
Q Consensus 257 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~----~~~d 332 (875)
++.+||+||+.++....+... +. .....++.+++.+||. +..+
T Consensus 97 ~~~~tv~~nl~~~~~~~~~~~---------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~ 143 (258)
T PRK14241 97 FPTMSIRDNVVAGLKLNGVRN---------KK------------------------DLDELVEKSLRGANLWNEVKDRLD 143 (258)
T ss_pred CCCCcHHHHHHHHHHhcCCCC---------HH------------------------HHHHHHHHHHHHcCCchhhhhHhh
Confidence 999999999988654321100 00 0012346678888884 3344
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcC
Q 002833 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (875)
Q Consensus 333 t~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD 412 (875)
+.+ +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|++.|++ .++.+++|
T Consensus 144 ~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tviivsH~~-~~~~~~~d 215 (258)
T PRK14241 144 KPG-----GGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ--DYTIVIVTHNM-QQAARVSD 215 (258)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecCH-HHHHHhCC
Confidence 444 45999999999999999999999999999999999999999999999964 57888877665 46788999
Q ss_pred eEEEEe------CCeEEEecChhhHH
Q 002833 413 DIILLS------EGQIVYQGPRDNVL 432 (875)
Q Consensus 413 ~vilL~------~G~iv~~Gp~~~~~ 432 (875)
++++|+ +|++++.|+++++.
T Consensus 216 ~i~~l~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 216 QTAFFNLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred EEEEEecccCCCCceEEecCCHHHHH
Confidence 999997 79999999988763
No 179
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-36 Score=322.05 Aligned_cols=211 Identities=18% Similarity=0.285 Sum_probs=167.2
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc---cCceEEEEecCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~l 260 (875)
+.+|+|+|+++++||+++|+||||||||||+++|+|.+++....+|+|.++|+++.... .++.++|++|+..+++ .
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~ 93 (246)
T PRK14269 15 KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-K 93 (246)
T ss_pred EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-c
Confidence 46999999999999999999999999999999999997531123999999999886532 2457999999988887 6
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccC
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (875)
||+||+.++...++.... .. .....++.+++.+||........ +...
T Consensus 94 tv~eni~~~~~~~~~~~~--------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~-~~~~ 140 (246)
T PRK14269 94 SIYENISYAPKLHGMIKN--------KD------------------------EEEALVVDCLQKVGLFEEVKDKL-KQNA 140 (246)
T ss_pred cHHHHhhhHHhhcCcccC--------hH------------------------HHHHHHHHHHHHcCCChhhhHHh-cCCc
Confidence 999999886433221000 00 01123456888899853211111 2234
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCC
Q 002833 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (875)
Q Consensus 341 rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G 420 (875)
+.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ +.|+|+++|++ .++.+++|++++|++|
T Consensus 141 ~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~-~~~~~~~d~i~~l~~G 217 (246)
T PRK14269 141 LALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH--NLSMIMVTHNM-QQGKRVADYTAFFHLG 217 (246)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEecCH-HHHHhhCcEEEEEECC
Confidence 56999999999999999999999999999999999999999999999864 78888887765 4678899999999999
Q ss_pred eEEEecChhhH
Q 002833 421 QIVYQGPRDNV 431 (875)
Q Consensus 421 ~iv~~Gp~~~~ 431 (875)
++++.|+.+++
T Consensus 218 ~i~~~g~~~~~ 228 (246)
T PRK14269 218 ELIEFGESKEF 228 (246)
T ss_pred EEEEECCHHHH
Confidence 99999998875
No 180
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-36 Score=324.73 Aligned_cols=206 Identities=19% Similarity=0.321 Sum_probs=166.2
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC--CCCCCccEEEECCEeCCCC-----ccCceEEEEecCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~--~~~~~sG~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~ 256 (875)
+.+|+|+|++|++||+++|+|||||||||||++|+|.++ |....+|+|+++|+++... ..++.++|++|+..+
T Consensus 25 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 104 (259)
T PRK14274 25 HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNP 104 (259)
T ss_pred eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCcc
Confidence 469999999999999999999999999999999999987 3222489999999987521 124579999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCc----ccc
Q 002833 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CAD 332 (875)
Q Consensus 257 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~----~~d 332 (875)
++. ||+||+.|..+..+... +.+ ....++.+++.+||.+ ..+
T Consensus 105 ~~~-tv~enl~~~~~~~~~~~---------~~~------------------------~~~~~~~~l~~~~l~~~~~~~l~ 150 (259)
T PRK14274 105 FPQ-SIFDNVAYGPRIHGTKN---------KKK------------------------LQEIVEKSLKDVALWDEVKDRLH 150 (259)
T ss_pred ccc-CHHHHHHhHHHhcCCCC---------HHH------------------------HHHHHHHHHHHcCCchhhhhhhh
Confidence 875 99999988643321100 000 0112456778888753 234
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcC
Q 002833 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (875)
Q Consensus 333 t~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD 412 (875)
+. .+.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ +.|+|++.|++. ++.++||
T Consensus 151 ~~-----~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivtH~~~-~~~~~~d 222 (259)
T PRK14274 151 TQ-----ALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE--KYTIVIVTHNMQ-QAARVSD 222 (259)
T ss_pred CC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCHH-HHHHhCC
Confidence 43 446999999999999999999999999999999999999999999999864 678888877654 7788999
Q ss_pred eEEEEeCCeEEEecChhhH
Q 002833 413 DIILLSEGQIVYQGPRDNV 431 (875)
Q Consensus 413 ~vilL~~G~iv~~Gp~~~~ 431 (875)
++++|++|+++.+|+++++
T Consensus 223 ~i~~l~~G~i~~~g~~~~~ 241 (259)
T PRK14274 223 QTAFFYMGELVECNDTNKM 241 (259)
T ss_pred EEEEEECCEEEEECCHHHH
Confidence 9999999999999998876
No 181
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-36 Score=340.39 Aligned_cols=217 Identities=25% Similarity=0.382 Sum_probs=176.3
Q ss_pred cccCCccc-ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEE
Q 002833 175 HLVPSKKR-SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYI 250 (875)
Q Consensus 175 ~~~~~~~~-~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv 250 (875)
++..++.+ +.++|+|+|+++++||.+||+|++|||||||+++|+|-++|+ +|+|+.||.++..... ++.++++
T Consensus 341 ~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~---~G~i~~~g~~~~~l~~~~~~e~i~vl 417 (573)
T COG4987 341 NVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQALRETISVL 417 (573)
T ss_pred cceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC---CCeeeECCcChhhCChhhHHHHHhhh
Confidence 34444443 346999999999999999999999999999999999999997 9999999999887655 3578999
Q ss_pred ecCCCCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCcc
Q 002833 251 SQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDIC 330 (875)
Q Consensus 251 ~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~ 330 (875)
+|...+|. -|+|+||.++. |+...+++.++....+.++ .+ .+.++.
T Consensus 418 ~Qr~hlF~-~Tlr~NL~lA~-------------------------~~AsDEel~~aL~qvgL~~------l~--~~~p~g 463 (573)
T COG4987 418 TQRVHLFS-GTLRDNLRLAN-------------------------PDASDEELWAALQQVGLEK------LL--ESAPDG 463 (573)
T ss_pred ccchHHHH-HHHHHHHhhcC-------------------------CCCCHHHHHHHHHHcCHHH------HH--HhChhh
Confidence 99755554 59999998862 3444444444433322211 11 233456
Q ss_pred ccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhh
Q 002833 331 ADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL 410 (875)
Q Consensus 331 ~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~l 410 (875)
.||.+|+ ..+.||||||||++|||+|+.+.++++|||||.|||+.|..++++.|.+-++ ++|+++++|+-. -.+.
T Consensus 464 l~t~lge-~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~--~kTll~vTHrL~--~le~ 538 (573)
T COG4987 464 LNTWLGE-GGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE--GKTLLMVTHRLR--GLER 538 (573)
T ss_pred hhchhcc-CCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc--CCeEEEEecccc--cHhh
Confidence 7888985 5677999999999999999999999999999999999999999999998764 899999988765 3477
Q ss_pred cCeEEEEeCCeEEEecChhhHHH
Q 002833 411 FDDIILLSEGQIVYQGPRDNVLE 433 (875)
Q Consensus 411 fD~vilL~~G~iv~~Gp~~~~~~ 433 (875)
||+|++|++|+++++|.++++..
T Consensus 539 ~drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 539 MDRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred cCEEEEEECCeeeecCCHHhhhc
Confidence 99999999999999999998864
No 182
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=6.6e-36 Score=355.73 Aligned_cols=207 Identities=26% Similarity=0.429 Sum_probs=169.8
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (875)
+++|+|+|++++|||.++|+||||||||||+++|+|.++|+ +|+|++||.++.+... ++.++||+|++.+|+ .
T Consensus 353 ~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 428 (574)
T PRK11160 353 QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYSEAALRQAISVVSQRVHLFS-A 428 (574)
T ss_pred CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhheeEEcccchhhc-c
Confidence 46999999999999999999999999999999999999997 9999999999887653 567999999988776 5
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccC
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (875)
|++||+.++.. +.+.+++.+++...+. ++.+ -. ++..||.+|+. .
T Consensus 429 ti~~Ni~~~~~-------------------------~~~~~~i~~al~~~~l------~~~i--~~-p~GldT~vge~-g 473 (574)
T PRK11160 429 TLRDNLLLAAP-------------------------NASDEALIEVLQQVGL------EKLL--ED-DKGLNAWLGEG-G 473 (574)
T ss_pred cHHHHhhcCCC-------------------------ccCHHHHHHHHHHcCC------HHHH--cC-ccccCchhcCC-C
Confidence 99999988631 1111122222221111 1111 13 56789999964 5
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCC
Q 002833 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (875)
Q Consensus 341 rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G 420 (875)
+.||||||||++|||+|+.+|++|+|||||++||+.++..|.+.|+++.+ ++|+|++.|+++ ....||+|++|++|
T Consensus 474 ~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~--~~tviiitHr~~--~~~~~d~i~~l~~G 549 (574)
T PRK11160 474 RQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQ--NKTVLMITHRLT--GLEQFDRICVMDNG 549 (574)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC--CCEEEEEecChh--HHHhCCEEEEEeCC
Confidence 67999999999999999999999999999999999999999999999863 789999888874 45679999999999
Q ss_pred eEEEecChhhHHH
Q 002833 421 QIVYQGPRDNVLE 433 (875)
Q Consensus 421 ~iv~~Gp~~~~~~ 433 (875)
++++.|+++++.+
T Consensus 550 ~i~~~g~~~~l~~ 562 (574)
T PRK11160 550 QIIEQGTHQELLA 562 (574)
T ss_pred eEEEeCCHHHHHh
Confidence 9999999988753
No 183
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-35 Score=320.82 Aligned_cols=210 Identities=20% Similarity=0.289 Sum_probs=167.6
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC--CCCccEEEECCEeCCCC-----ccCceEEEEecCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~--~~~sG~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~ 256 (875)
+++|+|||+++++||+++|+|||||||||||++|+|+++|. ...+|+|.++|+++... ..++.++|++|++.+
T Consensus 33 ~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 112 (267)
T PRK14237 33 KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNP 112 (267)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcc
Confidence 46999999999999999999999999999999999998641 12499999999987531 124579999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCcccccccc
Q 002833 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (875)
Q Consensus 257 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (875)
++ .||+||+.++....+... +. +....+.++++.++|.+..+...
T Consensus 113 ~~-~tv~eni~~~~~~~~~~~---------~~------------------------~~~~~~~~~l~~~~l~~~i~~~~- 157 (267)
T PRK14237 113 FA-KSIYENITFALERAGVKD---------KK------------------------VLDEIVETSLKQAALWDQVKDDL- 157 (267)
T ss_pred cc-ccHHHHHHhHHHhcCCCC---------HH------------------------HHHHHHHHHHHHcCCCchhhhhh-
Confidence 87 599999988643221100 00 01123456788888854322222
Q ss_pred CccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEE
Q 002833 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (875)
Q Consensus 337 ~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vil 416 (875)
+..++.|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++.+ +.|+|++.|++. ++.++||++++
T Consensus 158 ~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~-~~~~~~d~i~~ 234 (267)
T PRK14237 158 HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK--NYTIIIVTHNMQ-QAARASDYTAF 234 (267)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEecCHH-HHHHhcCEEEE
Confidence 234556999999999999999999999999999999999999999999999953 678888877654 78899999999
Q ss_pred EeCCeEEEecChhhH
Q 002833 417 LSEGQIVYQGPRDNV 431 (875)
Q Consensus 417 L~~G~iv~~Gp~~~~ 431 (875)
|++|++++.|+++++
T Consensus 235 l~~G~i~~~g~~~~~ 249 (267)
T PRK14237 235 FYLGDLIEYDKTRNI 249 (267)
T ss_pred EECCEEEEeCCHHHH
Confidence 999999999998876
No 184
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.8e-36 Score=314.09 Aligned_cols=192 Identities=29% Similarity=0.418 Sum_probs=162.2
Q ss_pred ceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc-------cCceEEEEecCCCCCCCCC
Q 002833 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-------PQRTCAYISQHDLHHGEMT 261 (875)
Q Consensus 189 ~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~-------~~~~~~yv~Q~d~~~~~lT 261 (875)
|||++|++ |+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|+..+++.+|
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLN 91 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCC
Confidence 99999999 999999999999999999999999986 999999998864211 1357999999999999999
Q ss_pred HHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCC
Q 002833 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (875)
Q Consensus 262 V~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (875)
|+||+.+...... .. .....++++++.+||.+..+..++
T Consensus 92 ~~~~l~~~~~~~~------------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~----- 130 (214)
T cd03297 92 VRENLAFGLKRKR------------NR------------------------EDRISVDELLDLLGLDHLLNRYPA----- 130 (214)
T ss_pred HHHHHHHHHhhCC------------HH------------------------HHHHHHHHHHHHcCCHhHhhcCcc-----
Confidence 9999987642110 00 001234668899999877776665
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCe
Q 002833 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (875)
Q Consensus 342 gLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~ 421 (875)
.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++ +++.+++|++++|++|+
T Consensus 131 ~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~ 209 (214)
T cd03297 131 QLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDL-SEAEYLADRIVVMEDGR 209 (214)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCH-HHHHHhcCEEEEEECCE
Confidence 49999999999999999999999999999999999999999999999875578888887665 46778999999999999
Q ss_pred EEEec
Q 002833 422 IVYQG 426 (875)
Q Consensus 422 iv~~G 426 (875)
++.+|
T Consensus 210 i~~~g 214 (214)
T cd03297 210 LQYIG 214 (214)
T ss_pred EEecC
Confidence 98775
No 185
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-36 Score=303.85 Aligned_cols=208 Identities=29% Similarity=0.447 Sum_probs=173.8
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCC
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGE 259 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~ 259 (875)
.+.+|++||++++||||++|+||||||||||||+|+|.+.|+ +|++.|||.+++.+.+ .+.-+.++|+..+-..
T Consensus 13 Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFp 89 (259)
T COG4559 13 GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFP 89 (259)
T ss_pred cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCHHHHHHHhhhcccCcccccc
Confidence 456999999999999999999999999999999999999997 9999999999988765 2566899999887666
Q ss_pred CCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCcc
Q 002833 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (875)
Q Consensus 260 lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (875)
.||+|-+.++..-++.+.. | . ++..+++..|...++.+.+..-.
T Consensus 90 Ftv~eVV~mGr~p~~~g~~-----------------~--~-------------e~~~i~~~ala~~d~~~la~R~y---- 133 (259)
T COG4559 90 FTVQEVVQMGRIPHRSGRE-----------------P--E-------------EDERIAAQALAATDLSGLAGRDY---- 133 (259)
T ss_pred eEHHHHHHhcccccccCCC-----------------c--h-------------hhHHHHHHHHHHcChhhhhccch----
Confidence 7999999998654432211 0 0 12234667888888888776543
Q ss_pred CCCCCHHHHHHHHHHHHHhc------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCe
Q 002833 340 RRGISGGQKKRVTTGEMLVG------TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (875)
Q Consensus 340 ~rgLSGGerkRVsIA~aLv~------~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~ 413 (875)
+.|||||||||.+||.|+. ++++||||||||.||......+++..|++++. |..|++. +|+..-+..+||+
T Consensus 134 -~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~-g~~V~~V-LHDLNLAA~YaDr 210 (259)
T COG4559 134 -RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE-GGAVLAV-LHDLNLAAQYADR 210 (259)
T ss_pred -hhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc-CCcEEEE-EccchHHHHhhhe
Confidence 5699999999999999974 34599999999999999999999999999985 6666665 4566778899999
Q ss_pred EEEEeCCeEEEecChhhHH
Q 002833 414 IILLSEGQIVYQGPRDNVL 432 (875)
Q Consensus 414 vilL~~G~iv~~Gp~~~~~ 432 (875)
|++|++||++..|++++++
T Consensus 211 ivll~~Grv~a~g~p~~vl 229 (259)
T COG4559 211 IVLLHQGRVIASGSPQDVL 229 (259)
T ss_pred eeeeeCCeEeecCCHHHhc
Confidence 9999999999999999875
No 186
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-36 Score=321.47 Aligned_cols=207 Identities=20% Similarity=0.292 Sum_probs=165.9
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC--CCCCCccEEEECCEeCCCC-----ccCceEEEEecCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~--~~~~~sG~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~ 256 (875)
..+|+|+|+.|++||+++|+|||||||||||++|+|.++ |....+|+|.++|+++... ..++.++|++|+..+
T Consensus 26 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 105 (260)
T PRK10744 26 FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTP 105 (260)
T ss_pred eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCcc
Confidence 359999999999999999999999999999999999986 2112389999999987421 114579999999887
Q ss_pred CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCC----cccc
Q 002833 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICAD 332 (875)
Q Consensus 257 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~----~~~d 332 (875)
++ +||+||+.+......... .. +....++++++.+||. +..+
T Consensus 106 ~~-~tv~~nl~~~~~~~~~~~---------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~ 151 (260)
T PRK10744 106 FP-MSIYDNIAFGVRLFEKLS---------RA------------------------EMDERVEWALTKAALWNEVKDKLH 151 (260)
T ss_pred Cc-CcHHHHHhhhHhhcCCCC---------HH------------------------HHHHHHHHHHHHcCCChhhHHHHh
Confidence 87 899999988643221000 00 0012356678888874 2334
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcC
Q 002833 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (875)
Q Consensus 333 t~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD 412 (875)
..+ +.|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++.+ +.|+|++.|++ .++.+++|
T Consensus 152 ~~~-----~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiii~sH~~-~~~~~~~d 223 (260)
T PRK10744 152 QSG-----YSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ--DYTVVIVTHNM-QQAARCSD 223 (260)
T ss_pred cCC-----CCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCH-HHHHHhCC
Confidence 444 45999999999999999999999999999999999999999999999953 67888887765 46778999
Q ss_pred eEEEEeCCeEEEecChhhHH
Q 002833 413 DIILLSEGQIVYQGPRDNVL 432 (875)
Q Consensus 413 ~vilL~~G~iv~~Gp~~~~~ 432 (875)
++++|++|+++..|+.+++.
T Consensus 224 ~i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 224 YTAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988763
No 187
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-36 Score=326.89 Aligned_cols=212 Identities=26% Similarity=0.350 Sum_probs=171.5
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC-----CCCccEEEECCEeCCCCcc---CceEEEEecCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD-----LRASGKITYCGHELNEFVP---QRTCAYISQHDL 255 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~-----~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~ 255 (875)
+.+|+|+|+.|++||+++|+||||||||||||+|+|.++|+ ...+|+|.++|.++..... ++.++|++|++.
T Consensus 14 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~ 93 (272)
T PRK13547 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQ 93 (272)
T ss_pred EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCC
Confidence 46999999999999999999999999999999999999874 1128999999998764322 346899999987
Q ss_pred CCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccc
Q 002833 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335 (875)
Q Consensus 256 ~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v 335 (875)
.++.+||+||+.+......... +... . +....++.+++.+||.+..++.+
T Consensus 94 ~~~~~tv~e~l~~~~~~~~~~~---------------~~~~-~--------------~~~~~~~~~l~~~~l~~~~~~~~ 143 (272)
T PRK13547 94 PAFAFSAREIVLLGRYPHARRA---------------GALT-H--------------RDGEIAWQALALAGATALVGRDV 143 (272)
T ss_pred CCCCCcHHHHHhhccccccccc---------------ccCC-H--------------HHHHHHHHHHHHcCcHhhhcCCc
Confidence 6677999999987532110000 0000 0 01123567889999987777666
Q ss_pred cCccCCCCCHHHHHHHHHHHHHh---------cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchh
Q 002833 336 GDEMRRGISGGQKKRVTTGEMLV---------GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE 406 (875)
Q Consensus 336 g~~~~rgLSGGerkRVsIA~aLv---------~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~e 406 (875)
+ .|||||||||+||++|+ .+|++|+|||||+|||+.+...+.+.|+++.+..+.|+|++.|++. +
T Consensus 144 ~-----~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~ 217 (272)
T PRK13547 144 T-----TLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-L 217 (272)
T ss_pred c-----cCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-H
Confidence 5 49999999999999999 5999999999999999999999999999998655789998877754 6
Q ss_pred HHhhcCeEEEEeCCeEEEecChhhH
Q 002833 407 TYDLFDDIILLSEGQIVYQGPRDNV 431 (875)
Q Consensus 407 i~~lfD~vilL~~G~iv~~Gp~~~~ 431 (875)
+.++||++++|++|++++.|+++++
T Consensus 218 ~~~~~d~i~~l~~G~i~~~g~~~~~ 242 (272)
T PRK13547 218 AARHADRIAMLADGAIVAHGAPADV 242 (272)
T ss_pred HHHhCCEEEEEECCeEEEecCHHHH
Confidence 7789999999999999999998776
No 188
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-36 Score=321.01 Aligned_cols=206 Identities=21% Similarity=0.352 Sum_probs=165.1
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCC--CCCCccEEEECCEeCCCC-----ccCceEEEEecCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGK--DLRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~--~~~~sG~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~ 256 (875)
+++|+|+|++|++||+++|+|||||||||||++|+|.+++ ....+|+|.++|+++... ..++.++|++|+..+
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 95 (250)
T PRK14240 16 FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNP 95 (250)
T ss_pred ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCcc
Confidence 4699999999999999999999999999999999998763 212489999999987531 124569999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCc----ccc
Q 002833 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CAD 332 (875)
Q Consensus 257 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~----~~d 332 (875)
++ +||+||+.+.....+.... . .....++++++.+++.+ ..+
T Consensus 96 ~~-~t~~~ni~~~~~~~~~~~~---------~------------------------~~~~~~~~~l~~~~l~~~l~~~~~ 141 (250)
T PRK14240 96 FP-MSIYDNVAYGPRTHGIKDK---------K------------------------KLDEIVEKSLKGAALWDEVKDRLK 141 (250)
T ss_pred Cc-ccHHHHHHHHHHhcCCCCH---------H------------------------HHHHHHHHHHHHcCCchhhHHHHh
Confidence 87 8999999986543221000 0 00112455677777642 334
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcC
Q 002833 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (875)
Q Consensus 333 t~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD 412 (875)
..+ +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|+|++.|++ .++.+++|
T Consensus 142 ~~~-----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~-~~~~~~~d 213 (250)
T PRK14240 142 KSA-----LGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK--DYTIVIVTHNM-QQASRISD 213 (250)
T ss_pred cCC-----CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEEeCH-HHHHhhCC
Confidence 444 46999999999999999999999999999999999999999999999853 67888887764 47888999
Q ss_pred eEEEEeCCeEEEecChhhH
Q 002833 413 DIILLSEGQIVYQGPRDNV 431 (875)
Q Consensus 413 ~vilL~~G~iv~~Gp~~~~ 431 (875)
++++|++|+++..|+++++
T Consensus 214 ~v~~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 214 KTAFFLNGEIVEFGDTVDL 232 (250)
T ss_pred EEEEEECCEEEEeCCHHHH
Confidence 9999999999999998876
No 189
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=8.3e-36 Score=362.81 Aligned_cols=206 Identities=25% Similarity=0.393 Sum_probs=168.0
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (875)
+++|+|+|++|+|||.++|+||||||||||+|+|+|.++|+ +|+|.+||+++.++.. ++.++||+|++.+|+ .
T Consensus 494 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~-g 569 (711)
T TIGR00958 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT---GGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFS-G 569 (711)
T ss_pred CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHhhceEEecCccccc-c
Confidence 46999999999999999999999999999999999999997 9999999999887643 578999999988776 5
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccC
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (875)
||+|||.++.. +.+.+++.+++...+. ++.++ .|++..||.+|+. .
T Consensus 570 TIreNI~~g~~-------------------------~~~~e~i~~al~~a~l------~~~i~--~lp~GldT~ige~-G 615 (711)
T TIGR00958 570 SVRENIAYGLT-------------------------DTPDEEIMAAAKAANA------HDFIM--EFPNGYDTEVGEK-G 615 (711)
T ss_pred CHHHHHhcCCC-------------------------CCCHHHHHHHHHHcCC------HHHHH--hCCCccCCcccCC-C
Confidence 99999988631 1111222333322221 11222 3566789999864 5
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCC
Q 002833 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (875)
Q Consensus 341 rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G 420 (875)
..||||||||++|||+|+.+|+||+|||||++||+.+...+.+ ... ..++|+|++.|++ ++.+.+|+|++|++|
T Consensus 616 ~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~~---~~~~TvIiItHrl--~~i~~aD~IivL~~G 689 (711)
T TIGR00958 616 SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SRS---RASRTVLLIAHRL--STVERADQILVLKKG 689 (711)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hhc---cCCCeEEEEeccH--HHHHhCCEEEEEECC
Confidence 6799999999999999999999999999999999999999988 222 2478999988887 466789999999999
Q ss_pred eEEEecChhhHHH
Q 002833 421 QIVYQGPRDNVLE 433 (875)
Q Consensus 421 ~iv~~Gp~~~~~~ 433 (875)
+++++|+++++.+
T Consensus 690 ~ive~Gt~~eL~~ 702 (711)
T TIGR00958 690 SVVEMGTHKQLME 702 (711)
T ss_pred EEEEeeCHHHHHh
Confidence 9999999998764
No 190
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.6e-37 Score=335.36 Aligned_cols=256 Identities=23% Similarity=0.391 Sum_probs=203.7
Q ss_pred HhHHHHHHHHHHhhccChHHHHHHHhhhccccCCCCCceEEEEeeeeEEEEeecccccccchhHHHHHHHHHHhhhcccc
Q 002833 98 QDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLV 177 (875)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~ 177 (875)
|....=||+...+..+.+| +++.........++-.+.|+|+++.
T Consensus 503 Q~nfiDmEnmfdllkee~e-----Vvd~P~a~pl~~~~G~i~fsnvtF~------------------------------- 546 (790)
T KOG0056|consen 503 QKNFIDMENMFDLLKEEPE-----VVDLPGAPPLKVTQGKIEFSNVTFA------------------------------- 546 (790)
T ss_pred HHhhhhHHHHHHHhhcCch-----hhcCCCCCCccccCCeEEEEEeEEe-------------------------------
Confidence 3344445666666666665 3333334445567778889888765
Q ss_pred CCcccccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc---cCceEEEEecCC
Q 002833 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHD 254 (875)
Q Consensus 178 ~~~~~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~~~yv~Q~d 254 (875)
+..++++|+||||++.||+.+||+||||+||||+|++|-.+++-+ +|.|+++|+++.... .++.||.||||.
T Consensus 547 --Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~---sGsI~iDgqdIrnvt~~SLRs~IGVVPQDt 621 (790)
T KOG0056|consen 547 --YDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVN---SGSITIDGQDIRNVTQSSLRSSIGVVPQDT 621 (790)
T ss_pred --cCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhcc---CceEEEcCchHHHHHHHHHHHhcCcccCcc
Confidence 334578999999999999999999999999999999999999876 999999999986542 357899999998
Q ss_pred CCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCcccccc
Q 002833 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTM 334 (875)
Q Consensus 255 ~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 334 (875)
.+|.+ |+..|+.|+ +|+...+++.+|+..++.++ +++++++.++|.
T Consensus 622 vLFNd-TI~yNIrya-------------------------k~~AsneevyaAAkAA~IHd--------rIl~fPegY~t~ 667 (790)
T KOG0056|consen 622 VLFND-TILYNIRYA-------------------------KPSASNEEVYAAAKAAQIHD--------RILQFPEGYNTR 667 (790)
T ss_pred eeecc-eeeeheeec-------------------------CCCCChHHHHHHHHHhhHHH--------HHhcCchhhhhh
Confidence 88876 999999886 23333334444443332222 478999999999
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeE
Q 002833 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (875)
Q Consensus 335 vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~v 414 (875)
||++..+ |||||||||+|||+++..|.+++|||.||+||..|..+|..+|.+++. ++|.|+.-|..+ +.-.+|.|
T Consensus 668 VGERGLk-LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIVvAHRLS--TivnAD~I 742 (790)
T KOG0056|consen 668 VGERGLK-LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA--NRTTIVVAHRLS--TIVNADLI 742 (790)
T ss_pred hhhcccc-cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEEEeeeeh--heecccEE
Confidence 9987666 999999999999999999999999999999999999999999999996 556666556554 55569999
Q ss_pred EEEeCCeEEEecChhhHHH
Q 002833 415 ILLSEGQIVYQGPRDNVLE 433 (875)
Q Consensus 415 ilL~~G~iv~~Gp~~~~~~ 433 (875)
+++++|+|++.|.++++..
T Consensus 743 Lvi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 743 LVISNGRIVERGRHEELLK 761 (790)
T ss_pred EEEeCCeEeecCcHHHHHh
Confidence 9999999999999999864
No 191
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-36 Score=298.59 Aligned_cols=206 Identities=23% Similarity=0.334 Sum_probs=179.4
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHH
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (875)
+.+|+|||+.|.+||.++++||||||||||||++||+.+|. .|+|.+||++++.- ...-|.|+|++.++|.+||.
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r~i~gP--gaergvVFQ~~~LlPWl~~~ 92 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEGP--GAERGVVFQNEALLPWLNVI 92 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCEeccCC--CccceeEeccCccchhhHHH
Confidence 55999999999999999999999999999999999999997 99999999998753 34458999999999999999
Q ss_pred HHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCC
Q 002833 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (875)
Q Consensus 264 EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (875)
+|++|+.+++|.... .| ..++.+.+...||+...+..+- .|
T Consensus 93 dNvafgL~l~Gi~k~-------~R---------------------------~~~a~q~l~~VgL~~~~~~~i~-----qL 133 (259)
T COG4525 93 DNVAFGLQLRGIEKA-------QR---------------------------REIAHQMLALVGLEGAEHKYIW-----QL 133 (259)
T ss_pred HHHHHHHHhcCCCHH-------HH---------------------------HHHHHHHHHHhCcccccccceE-----ee
Confidence 999999999887532 11 2245678889999988776654 59
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeC--Ce
Q 002833 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE--GQ 421 (875)
Q Consensus 344 SGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~--G~ 421 (875)
||||||||.|||||+.+|++|+||||+..||.-|+.++..+|-++.+..|+.+++++ |..+|..-++++++||+. |+
T Consensus 134 SGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliT-H~ieEAlflatrLvvlsp~pgR 212 (259)
T COG4525 134 SGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLIT-HDIEEALFLATRLVVLSPGPGR 212 (259)
T ss_pred cchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEe-ccHHHHHhhhheeEEecCCCce
Confidence 999999999999999999999999999999999999999999999998888888865 556788889999999985 89
Q ss_pred EEEecChhhHHHH
Q 002833 422 IVYQGPRDNVLEF 434 (875)
Q Consensus 422 iv~~Gp~~~~~~~ 434 (875)
|+..-|++=...|
T Consensus 213 vv~~~~~df~rR~ 225 (259)
T COG4525 213 VVERLPLDFARRY 225 (259)
T ss_pred eeEecCCCHHHHh
Confidence 9988776633333
No 192
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=3.6e-36 Score=325.19 Aligned_cols=206 Identities=24% Similarity=0.331 Sum_probs=170.9
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc------CceEEEEecCC--C
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP------QRTCAYISQHD--L 255 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~------~~~~~yv~Q~d--~ 255 (875)
+.+|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++....+ ++.++|++|+. .
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 101 (268)
T PRK10419 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPS---QGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISA 101 (268)
T ss_pred eeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEeccccChhHHHHHHhcEEEEEcChhhc
Confidence 56999999999999999999999999999999999999886 9999999998764322 45799999997 3
Q ss_pred CCCCCCHHHHHHHhhhhc-CCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCC-ccccc
Q 002833 256 HHGEMTVRETLDFSGRCL-GVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADT 333 (875)
Q Consensus 256 ~~~~lTV~EtL~f~a~~~-~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt 333 (875)
+++..|+.|++.+..... .. ... +....++++++.+||. +..++
T Consensus 102 ~~~~~t~~~~l~~~~~~~~~~----------~~~------------------------~~~~~~~~~l~~~gl~~~~~~~ 147 (268)
T PRK10419 102 VNPRKTVREIIREPLRHLLSL----------DKA------------------------ERLARASEMLRAVDLDDSVLDK 147 (268)
T ss_pred cCCCCCHHHHHHHHHHhhccC----------CHH------------------------HHHHHHHHHHHHcCCChhHhhC
Confidence 667899999987643210 00 000 0112356788999996 46666
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCe
Q 002833 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (875)
Q Consensus 334 ~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~ 413 (875)
.++ .|||||||||+||++|+.+|++|+|||||+|||..+...+.+.|+++++..+.|+|++.|++ .++.++||+
T Consensus 148 ~~~-----~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~-~~i~~~~d~ 221 (268)
T PRK10419 148 RPP-----QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDL-RLVERFCQR 221 (268)
T ss_pred CCc-----cCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCH-HHHHHhCCE
Confidence 554 59999999999999999999999999999999999999999999999875578888887765 477789999
Q ss_pred EEEEeCCeEEEecChhhHH
Q 002833 414 IILLSEGQIVYQGPRDNVL 432 (875)
Q Consensus 414 vilL~~G~iv~~Gp~~~~~ 432 (875)
+++|++|++++.|+++++.
T Consensus 222 i~~l~~G~i~~~g~~~~~~ 240 (268)
T PRK10419 222 VMVMDNGQIVETQPVGDKL 240 (268)
T ss_pred EEEEECCEEeeeCChhhcc
Confidence 9999999999999988753
No 193
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=5.3e-36 Score=317.75 Aligned_cols=205 Identities=23% Similarity=0.391 Sum_probs=162.3
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc---cCceEEEEecCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~l 260 (875)
+.+|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++.... .++.++|++|++.+++ .
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 90 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE---NGRVLVDGHDLALADPAWLRRQVGVVLQENVLFN-R 90 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCeehHhcCHHHHhhcEEEEcCCchhcc-c
Confidence 46999999999999999999999999999999999999986 999999999875432 1456999999987664 6
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHh--CCCccccccccCc
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL--GLDICADTMVGDE 338 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l--gL~~~~dt~vg~~ 338 (875)
||.||+.+... ... .. .+ .+... ......+++.+ |++...+..+
T Consensus 91 tv~~nl~~~~~--~~~-~~----~~------------------~~~~~------~~~~~~~l~~l~~~~~~~~~~~~--- 136 (237)
T cd03252 91 SIRDNIALADP--GMS-ME----RV------------------IEAAK------LAGAHDFISELPEGYDTIVGEQG--- 136 (237)
T ss_pred hHHHHhhccCC--CCC-HH----HH------------------HHHHH------HcCcHHHHHhCcccccchhhcCC---
Confidence 99999987532 100 00 00 00000 00123345555 5555445444
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEe
Q 002833 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (875)
Q Consensus 339 ~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~ 418 (875)
+.|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++++ +.|+|++.|++. ++ +.||++++|+
T Consensus 137 --~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~-~~-~~~d~v~~l~ 210 (237)
T cd03252 137 --AGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA--GRTVIIIAHRLS-TV-KNADRIIVME 210 (237)
T ss_pred --CcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHH-HH-HhCCEEEEEE
Confidence 45999999999999999999999999999999999999999999999863 789999888775 45 5699999999
Q ss_pred CCeEEEecChhhHH
Q 002833 419 EGQIVYQGPRDNVL 432 (875)
Q Consensus 419 ~G~iv~~Gp~~~~~ 432 (875)
+|++++.|+++++.
T Consensus 211 ~G~i~~~~~~~~~~ 224 (237)
T cd03252 211 KGRIVEQGSHDELL 224 (237)
T ss_pred CCEEEEEcCHHHHH
Confidence 99999999988764
No 194
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-36 Score=319.60 Aligned_cols=208 Identities=24% Similarity=0.324 Sum_probs=165.9
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCC--CCccEEEECCEeCCCC-----ccCceEEEEecCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL--RASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~--~~sG~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~ 256 (875)
+.+|+|+|+.|++||+++|+||||||||||||+|+|.++|.. ..+|+|.++|+++... ..++.++|++|++.+
T Consensus 17 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14272 17 KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNP 96 (252)
T ss_pred EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCcc
Confidence 469999999999999999999999999999999999987631 1379999999987531 124569999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCC----cccc
Q 002833 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICAD 332 (875)
Q Consensus 257 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~----~~~d 332 (875)
++.+||.||+.++....+...+ . + ....++.+++.+++. +..+
T Consensus 97 ~~~~t~~enl~~~~~~~~~~~~---------~----------~--------------~~~~~~~~l~~~~l~~~l~~~~~ 143 (252)
T PRK14272 97 FPTMSVFDNVVAGLKLAGIRDR---------D----------H--------------LMEVAERSLRGAALWDEVKDRLK 143 (252)
T ss_pred CcCCCHHHHHHHHHHhcCCCCH---------H----------H--------------HHHHHHHHHHHcCcchhhhhhhc
Confidence 9999999999876432211000 0 0 011233445555543 3345
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcC
Q 002833 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (875)
Q Consensus 333 t~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD 412 (875)
+.+ +.|||||||||+||++|+.+|++|+|||||+|||..+...+.+.|+++++ +.|+|++.|++. ++.++||
T Consensus 144 ~~~-----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~-~~~~~~d 215 (252)
T PRK14272 144 TPA-----TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK--VTTIIIVTHNMH-QAARVSD 215 (252)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCHH-HHHHhCC
Confidence 544 45999999999999999999999999999999999999999999999864 588888877654 7788999
Q ss_pred eEEEEeCCeEEEecChhhHH
Q 002833 413 DIILLSEGQIVYQGPRDNVL 432 (875)
Q Consensus 413 ~vilL~~G~iv~~Gp~~~~~ 432 (875)
++++|++|++++.|+++++.
T Consensus 216 ~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 216 TTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988763
No 195
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-36 Score=329.64 Aligned_cols=207 Identities=18% Similarity=0.339 Sum_probs=164.3
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC--CCCCCccEEEECCEeCCCC-----ccCceEEEEecCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~--~~~~~sG~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~ 256 (875)
+.+|+|+|+.|++||+++|+|||||||||||++|+|+.+ |....+|+|.++|+++... ..++.++|++|++.+
T Consensus 52 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l 131 (286)
T PRK14275 52 FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNP 131 (286)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCC
Confidence 459999999999999999999999999999999999864 3001399999999987532 124579999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCC----cccc
Q 002833 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICAD 332 (875)
Q Consensus 257 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~----~~~d 332 (875)
++. ||.||+.+.....+.... . .....+.++++.+|+. +..+
T Consensus 132 ~~~-tv~enl~~~~~~~~~~~~---------~------------------------~~~~~~~~~l~~~~l~~~l~~~~~ 177 (286)
T PRK14275 132 FPK-SIFDNIAYGPRLHGINDK---------K------------------------QLEEIVEKSLRKAALWDEVSDRLD 177 (286)
T ss_pred Ccc-CHHHHHHhHHHhcCCCcH---------H------------------------HHHHHHHHHHHHhCCccchhhHhh
Confidence 875 999999986433211000 0 0011244567777763 3344
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcC
Q 002833 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (875)
Q Consensus 333 t~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD 412 (875)
+.+ ..|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++++ +.|+|++.|++ .++.++||
T Consensus 178 ~~~-----~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tvIivsH~~-~~~~~~~d 249 (286)
T PRK14275 178 KNA-----LGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG--SYTIMIVTHNM-QQASRVSD 249 (286)
T ss_pred CCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCH-HHHHHhCC
Confidence 444 46999999999999999999999999999999999999999999999864 57888887765 46788999
Q ss_pred eEEEEeCCeEEEecChhhHH
Q 002833 413 DIILLSEGQIVYQGPRDNVL 432 (875)
Q Consensus 413 ~vilL~~G~iv~~Gp~~~~~ 432 (875)
++++|++|+++..|+++++.
T Consensus 250 ~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 250 YTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988763
No 196
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-36 Score=324.97 Aligned_cols=205 Identities=19% Similarity=0.283 Sum_probs=163.7
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCC--CCccEEEECCEeCCCC-----ccCceEEEEecCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL--RASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~--~~sG~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~ 256 (875)
+.+|+|+|++|++||+++|+|||||||||||++|+|++++.. ..+|+|.++|+++... ..++.++|++|++.+
T Consensus 26 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l 105 (269)
T PRK14259 26 FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNP 105 (269)
T ss_pred EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCcc
Confidence 459999999999999999999999999999999999987310 1399999999986421 123569999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCC----cccc
Q 002833 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICAD 332 (875)
Q Consensus 257 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~----~~~d 332 (875)
++ .||+||+.+.+...+... . ....++.+++.+++. +..+
T Consensus 106 ~~-~tv~enl~~~~~~~~~~~------~-----------------------------~~~~~~~~l~~~~l~~~l~~~~~ 149 (269)
T PRK14259 106 FP-KSIYENIAFGARINGYTG------D-----------------------------MDELVERSLRKAAVWDECKDKLN 149 (269)
T ss_pred ch-hhHHHHHhhhhhhcCCcH------H-----------------------------HHHHHHHHHHHhCCcchhhhhhC
Confidence 87 499999998754322100 0 001234466677663 3334
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcC
Q 002833 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (875)
Q Consensus 333 t~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD 412 (875)
+. ++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|++.|++ .++.++||
T Consensus 150 ~~-----~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~--~~tiiivtH~~-~~~~~~~d 221 (269)
T PRK14259 150 ES-----GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK--NFTIVIVTHNM-QQAVRVSD 221 (269)
T ss_pred CC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhcC
Confidence 44 346999999999999999999999999999999999999999999999854 57888877665 47889999
Q ss_pred eEEEEeC-----------CeEEEecChhhHH
Q 002833 413 DIILLSE-----------GQIVYQGPRDNVL 432 (875)
Q Consensus 413 ~vilL~~-----------G~iv~~Gp~~~~~ 432 (875)
++++|++ |++++.|+++++.
T Consensus 222 ~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~ 252 (269)
T PRK14259 222 MTAFFNAEEVEGGSGGKVGYLVEFNETKKIF 252 (269)
T ss_pred EEEEEeccccccccccccceEEEeCCHHHHH
Confidence 9999996 6789999998874
No 197
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.1e-36 Score=322.85 Aligned_cols=206 Identities=18% Similarity=0.289 Sum_probs=163.2
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC--CCCCCccEEEECCEeCCCC-----ccCceEEEEecCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~--~~~~~sG~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~ 256 (875)
+.+|+|+|+.|++||+++|+|||||||||||++|+|+.+ +....+|+|.++|+++... ..++.++|++|++.+
T Consensus 34 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 113 (268)
T PRK14248 34 KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNP 113 (268)
T ss_pred ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCcc
Confidence 459999999999999999999999999999999999864 1111389999999987532 124569999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCc----ccc
Q 002833 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CAD 332 (875)
Q Consensus 257 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~----~~d 332 (875)
++. ||.||+.+.....+.... . . ....+..+++.+++.+ ..+
T Consensus 114 ~~~-tv~enl~~~~~~~~~~~~---------~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~ 159 (268)
T PRK14248 114 FPK-SIYNNITHALKYAGERRK---------S----------V--------------LDEIVEESLTKAALWDEVKDRLH 159 (268)
T ss_pred Ccc-cHHHHHHHHHHhcCCCcH---------H----------H--------------HHHHHHHHHHHcCCCcchHHHHh
Confidence 875 999999876432111000 0 0 0112345677777742 234
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcC
Q 002833 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (875)
Q Consensus 333 t~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD 412 (875)
..+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|++.|++ .++.++||
T Consensus 160 ~~~-----~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~-~~~~~~~d 231 (268)
T PRK14248 160 SSA-----LSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE--EYSIIIVTHNM-QQALRVSD 231 (268)
T ss_pred cCc-----ccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCEEEEEEeCH-HHHHHhCC
Confidence 444 45999999999999999999999999999999999999999999999964 57888887765 46788999
Q ss_pred eEEEEeCCeEEEecChhhH
Q 002833 413 DIILLSEGQIVYQGPRDNV 431 (875)
Q Consensus 413 ~vilL~~G~iv~~Gp~~~~ 431 (875)
++++|++|++++.|+.+++
T Consensus 232 ~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 232 RTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred EEEEEECCEEEEeCCHHHH
Confidence 9999999999999998776
No 198
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-36 Score=319.96 Aligned_cols=211 Identities=22% Similarity=0.371 Sum_probs=166.8
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCC--CCCCccEEEECCEeCCCC-----ccCceEEEEecCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGK--DLRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~--~~~~sG~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~ 256 (875)
+.+|+|+|++|++||+++|+|||||||||||++|+|++++ ....+|+|.++|.++... ..++.++|++|++.+
T Consensus 16 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 95 (250)
T PRK14262 16 KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTP 95 (250)
T ss_pred ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCcc
Confidence 4699999999999999999999999999999999999874 112389999999987531 124579999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCcccccccc
Q 002833 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (875)
Q Consensus 257 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (875)
++ +||+||+.+.....+.... . .....++++++.+|+....+.. .
T Consensus 96 ~~-~tv~e~l~~~~~~~~~~~~---------~------------------------~~~~~~~~~l~~~~l~~~~~~~-~ 140 (250)
T PRK14262 96 FP-MSIYDNVAFGPRIHGVKSK---------H------------------------KLDRIVEESLKKAALWDEVKSE-L 140 (250)
T ss_pred Cc-ccHHHHHHHHHHHcCCCcH---------H------------------------HHHHHHHHHHHHcCCCchhHHH-H
Confidence 87 8999999886432211000 0 0011245577788875321111 1
Q ss_pred CccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEE
Q 002833 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (875)
Q Consensus 337 ~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vil 416 (875)
+..++.||||||||++||++|+.+|++|+|||||+|||..+...+.+.|+++++ +.|+|+++|++. ++.+++|++++
T Consensus 141 ~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tili~sH~~~-~~~~~~d~i~~ 217 (250)
T PRK14262 141 NKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE--NYTIVIVTHNIG-QAIRIADYIAF 217 (250)
T ss_pred hCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc--CcEEEEEeCCHH-HHHHhCCEEEE
Confidence 233456999999999999999999999999999999999999999999999864 578888877654 67889999999
Q ss_pred EeCCeEEEecChhhHH
Q 002833 417 LSEGQIVYQGPRDNVL 432 (875)
Q Consensus 417 L~~G~iv~~Gp~~~~~ 432 (875)
|++|+++..|+++++.
T Consensus 218 l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 218 MYRGELIEYGPTREIV 233 (250)
T ss_pred EECCEEEEecCHHHHH
Confidence 9999999999988764
No 199
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=3.4e-36 Score=352.86 Aligned_cols=208 Identities=24% Similarity=0.368 Sum_probs=174.0
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc----CceEEEEecCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (875)
+++|+|+|++|++||+++|+||||||||||||+|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (501)
T PRK10762 17 VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD---AGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQ 93 (501)
T ss_pred eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCC
Confidence 56999999999999999999999999999999999999986 9999999998754321 3569999999989999
Q ss_pred CCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCcc
Q 002833 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (875)
Q Consensus 260 lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (875)
+||+||+.|+......... .... +....++++++.+||.+..|..+++
T Consensus 94 ~tv~e~l~~~~~~~~~~~~------~~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-- 141 (501)
T PRK10762 94 LTIAENIFLGREFVNRFGR------IDWK------------------------KMYAEADKLLARLNLRFSSDKLVGE-- 141 (501)
T ss_pred CcHHHHhhhccccccccCc------cCHH------------------------HHHHHHHHHHHHcCCCCCccCchhh--
Confidence 9999999986432110000 0000 0112356789999999888887775
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeC
Q 002833 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (875)
Q Consensus 340 ~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~ 419 (875)
|||||||||+||++|+.+|++|||||||+|||+.++.++.+.|+++++ .+.|+|++.|++ +++.++||+|++|++
T Consensus 142 ---LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvii~sHd~-~~~~~~~d~i~~l~~ 216 (501)
T PRK10762 142 ---LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKS-QGRGIVYISHRL-KEIFEICDDVTVFRD 216 (501)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEeC
Confidence 999999999999999999999999999999999999999999999976 488888887654 578889999999999
Q ss_pred CeEEEecChhhH
Q 002833 420 GQIVYQGPRDNV 431 (875)
Q Consensus 420 G~iv~~Gp~~~~ 431 (875)
|+++..|+++++
T Consensus 217 G~i~~~~~~~~~ 228 (501)
T PRK10762 217 GQFIAEREVADL 228 (501)
T ss_pred CEEEEecCcCcC
Confidence 999999987754
No 200
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.4e-36 Score=319.12 Aligned_cols=210 Identities=20% Similarity=0.265 Sum_probs=165.2
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCC--CCccEEEECCEeCCCC-----ccCceEEEEecCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL--RASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~--~~sG~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~ 256 (875)
+.+|+|+|+.|++|++++|+|||||||||||++|+|+++|+. ..+|+|.++|.++... ..++.++|++|++.+
T Consensus 17 ~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 96 (251)
T PRK14249 17 HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNP 96 (251)
T ss_pred eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCcc
Confidence 469999999999999999999999999999999999998741 1269999999987431 124679999999988
Q ss_pred CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCcccccccc
Q 002833 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (875)
Q Consensus 257 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (875)
++. ||+||+.+....++.... + + ....++++++.+||.+..... .
T Consensus 97 ~~~-tv~enl~~~~~~~~~~~~----------~---------~--------------~~~~~~~~l~~~~l~~~l~~~-~ 141 (251)
T PRK14249 97 FPK-SIFDNVAFGPRMLGTTAQ----------S---------R--------------LDEVVEKSLRQAALWDEVKDN-L 141 (251)
T ss_pred CcC-cHHHHHhhHHHhcCCChh----------h---------H--------------HHHHHHHHHHHhCCchhhhhH-h
Confidence 875 999999887543221000 0 0 011234456666764321111 1
Q ss_pred CccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEE
Q 002833 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (875)
Q Consensus 337 ~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vil 416 (875)
+..+..|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++. .+.|+|++.|++ .++.++||++++
T Consensus 142 ~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~~tilivsh~~-~~~~~~~d~i~~ 218 (251)
T PRK14249 142 HKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK--QNYTIAIVTHNM-QQAARASDWTGF 218 (251)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cCCEEEEEeCCH-HHHHhhCCEEEE
Confidence 23345699999999999999999999999999999999999999999999984 378888887665 477789999999
Q ss_pred EeCCeEEEecChhhH
Q 002833 417 LSEGQIVYQGPRDNV 431 (875)
Q Consensus 417 L~~G~iv~~Gp~~~~ 431 (875)
|++|++++.|+++++
T Consensus 219 l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 219 LLTGDLVEYGRTGEI 233 (251)
T ss_pred EeCCeEEEeCCHHHH
Confidence 999999999998876
No 201
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-36 Score=319.54 Aligned_cols=206 Identities=21% Similarity=0.340 Sum_probs=165.0
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC--CCCCCccEEEECCEeCCCC-----ccCceEEEEecCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~--~~~~~sG~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~ 256 (875)
+++|+|+|+.|++||+++|+|||||||||||++|+|.++ |....+|+|.++|+++... ..++.++|++|++.+
T Consensus 17 ~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (251)
T PRK14251 17 YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTP 96 (251)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCcc
Confidence 469999999999999999999999999999999999986 2112489999999987431 124569999999887
Q ss_pred CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCc----ccc
Q 002833 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CAD 332 (875)
Q Consensus 257 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~----~~d 332 (875)
++ .||+||+.+.....+.... + .....++++++.+||.. ..+
T Consensus 97 ~~-~tv~enl~~~~~~~~~~~~--------------------~-------------~~~~~~~~~l~~~~l~~~~~~~~~ 142 (251)
T PRK14251 97 FP-FSVYDNVAYGLKIAGVKDK--------------------E-------------LIDQRVEESLKQAAIWKETKDNLD 142 (251)
T ss_pred CC-CcHHHHHHHHHHHcCCCCH--------------------H-------------HHHHHHHHHHHHcCCCcchHHHhc
Confidence 76 7999999876432211000 0 00112456778888842 234
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcC
Q 002833 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (875)
Q Consensus 333 t~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD 412 (875)
.. .+.||||||||++||++|+.+|++++|||||+|||+.+...+.+.|+++.+ +.|+|++.|++. ++.+++|
T Consensus 143 ~~-----~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiiiisH~~~-~~~~~~d 214 (251)
T PRK14251 143 RN-----AQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH--QYTFIMVTHNLQ-QAGRISD 214 (251)
T ss_pred cC-----hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc--CCeEEEEECCHH-HHHhhcC
Confidence 43 346999999999999999999999999999999999999999999999854 578888877654 6788899
Q ss_pred eEEEEeCCeEEEecChhhH
Q 002833 413 DIILLSEGQIVYQGPRDNV 431 (875)
Q Consensus 413 ~vilL~~G~iv~~Gp~~~~ 431 (875)
+|++|++|+++..|+.+++
T Consensus 215 ~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 215 QTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred EEEEEECCEEEEeCCHHHH
Confidence 9999999999999998876
No 202
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7.1e-36 Score=361.86 Aligned_cols=210 Identities=26% Similarity=0.414 Sum_probs=183.3
Q ss_pred cccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCC
Q 002833 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHG 258 (875)
Q Consensus 182 ~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~ 258 (875)
++.+||+|+|+.|++|+.+||+|||||||||.+.+|-..++|. +|+|.++|++++.+.. |+++|.|.|+|.+|.
T Consensus 1001 P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~---~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~ 1077 (1228)
T KOG0055|consen 1001 PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPD---AGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFN 1077 (1228)
T ss_pred CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCcccccCCHHHHHHhcceeccCchhhc
Confidence 3567999999999999999999999999999999999999997 9999999999988765 588999999999997
Q ss_pred CCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCc
Q 002833 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (875)
Q Consensus 259 ~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~ 338 (875)
. |++||+.|+.. +...+++++|+..+..+.. +.+|++.+||.||+.
T Consensus 1078 ~-TIrENI~YG~~-------------------------~vs~~eIi~Aak~ANaH~F--------I~sLP~GyDT~vGer 1123 (1228)
T KOG0055|consen 1078 G-TIRENIAYGSE-------------------------EVSEEEIIEAAKLANAHNF--------ISSLPQGYDTRVGER 1123 (1228)
T ss_pred c-cHHHHHhccCC-------------------------CCCHHHHHHHHHHhhhHHH--------HhcCcCcccCccCcc
Confidence 6 99999999821 0234455666665554443 568999999999975
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEe
Q 002833 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (875)
Q Consensus 339 ~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~ 418 (875)
. ..||||||||++|||||+++|+||||||.||+||+.+...+.+.|.+... |+|.|+..|.. .+.+.+|.|.|++
T Consensus 1124 G-~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~--gRT~IvIAHRL--STIqnaD~I~Vi~ 1198 (1228)
T KOG0055|consen 1124 G-VQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAME--GRTTIVIAHRL--STIQNADVIAVLK 1198 (1228)
T ss_pred c-CcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhc--CCcEEEEecch--hhhhcCCEEEEEE
Confidence 4 45999999999999999999999999999999999999999999999864 67877777776 4889999999999
Q ss_pred CCeEEEecChhhHHH
Q 002833 419 EGQIVYQGPRDNVLE 433 (875)
Q Consensus 419 ~G~iv~~Gp~~~~~~ 433 (875)
+|+|+++|++++++.
T Consensus 1199 ~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1199 NGKVVEQGTHDELLA 1213 (1228)
T ss_pred CCEEEecccHHHHHh
Confidence 999999999999875
No 203
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-36 Score=352.92 Aligned_cols=210 Identities=26% Similarity=0.314 Sum_probs=174.1
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc----CceEEEEecCCCCCC
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHG 258 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~ 258 (875)
++.+|+|||++|++||+++|+||||||||||||+|+|+++|+ ..+|+|.++|+++..... ++.++|++|++.+++
T Consensus 17 ~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 95 (506)
T PRK13549 17 GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHG-TYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVK 95 (506)
T ss_pred CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCC
Confidence 356999999999999999999999999999999999999861 139999999998864322 356999999998999
Q ss_pred CCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCc
Q 002833 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (875)
Q Consensus 259 ~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~ 338 (875)
.+||+||+.+....+..+. ...+ +....++++++.+||.+..+..+++
T Consensus 96 ~~tv~e~l~~~~~~~~~~~-------~~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~- 143 (506)
T PRK13549 96 ELSVLENIFLGNEITPGGI-------MDYD------------------------AMYLRAQKLLAQLKLDINPATPVGN- 143 (506)
T ss_pred CCcHHHHhhhcccccccCC-------cCHH------------------------HHHHHHHHHHHHcCCCCCcccchhh-
Confidence 9999999998753221000 0000 0112356789999998888877764
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEe
Q 002833 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (875)
Q Consensus 339 ~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~ 418 (875)
|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.++||+|++|+
T Consensus 144 ----LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvi~~tH~~-~~~~~~~d~v~~l~ 217 (506)
T PRK13549 144 ----LGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKA-HGIACIYISHKL-NEVKAISDTICVIR 217 (506)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcH-HHHHHhcCEEEEEE
Confidence 999999999999999999999999999999999999999999999975 588888887654 57788999999999
Q ss_pred CCeEEEecChhhH
Q 002833 419 EGQIVYQGPRDNV 431 (875)
Q Consensus 419 ~G~iv~~Gp~~~~ 431 (875)
+|++++.|+++++
T Consensus 218 ~G~i~~~~~~~~~ 230 (506)
T PRK13549 218 DGRHIGTRPAAGM 230 (506)
T ss_pred CCEEeeecccccC
Confidence 9999999987764
No 204
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1e-35 Score=339.32 Aligned_cols=213 Identities=29% Similarity=0.385 Sum_probs=181.6
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC-CCCccEEEECCEeCCCCcc-------CceEEEEecCC-
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD-LRASGKITYCGHELNEFVP-------QRTCAYISQHD- 254 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~-~~~sG~I~~nG~~~~~~~~-------~~~~~yv~Q~d- 254 (875)
..+++||||+|.|||+++|+|.|||||||+.++|.|++++. ...+|+|.|+|.++..... .+.++||+|++
T Consensus 22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~ 101 (539)
T COG1123 22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM 101 (539)
T ss_pred eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCch
Confidence 56999999999999999999999999999999999999876 4568999999997654332 36799999996
Q ss_pred -CCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccc
Q 002833 255 -LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (875)
Q Consensus 255 -~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 333 (875)
.+.|-+||.+-+.-..+.++... + .+....+.++|+..||++-...
T Consensus 102 ~slnP~~tIg~Qi~E~~~~h~~~~---------~------------------------~ea~~~a~elL~~Vgl~~~~~~ 148 (539)
T COG1123 102 TSLNPVMTIGDQIREALRLHGKGS---------R------------------------AEARKRAVELLEQVGLPDPERR 148 (539)
T ss_pred hhcCchhhHHHHHHHHHHHhcccc---------H------------------------HHHHHHHHHHHHHcCCCChhhh
Confidence 45677899988876665543221 1 1123356779999999987665
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCe
Q 002833 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (875)
Q Consensus 334 ~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~ 413 (875)
+.+++.|||||||||.||+||+.+|++|++|||||+||..++.+|++.|+++.++.|+++|+++|. ..-+.++||+
T Consensus 149 ---~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHD-l~Vva~~aDr 224 (539)
T COG1123 149 ---DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHD-LGVVAELADR 224 (539)
T ss_pred ---ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCC-HHHHHHhcCe
Confidence 568889999999999999999999999999999999999999999999999999889999887655 4578899999
Q ss_pred EEEEeCCeEEEecChhhHHH
Q 002833 414 IILLSEGQIVYQGPRDNVLE 433 (875)
Q Consensus 414 vilL~~G~iv~~Gp~~~~~~ 433 (875)
|+||++|++|+.|+++++.+
T Consensus 225 v~Vm~~G~iVE~G~~~~i~~ 244 (539)
T COG1123 225 VVVMYKGEIVETGPTEEILS 244 (539)
T ss_pred EEEEECCEEEEecCHHHHHh
Confidence 99999999999999999954
No 205
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-35 Score=319.11 Aligned_cols=222 Identities=20% Similarity=0.363 Sum_probs=172.7
Q ss_pred HHhhhccccCCcccccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCC---CCccEEEECCEeCCCCc---
Q 002833 169 SALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL---RASGKITYCGHELNEFV--- 242 (875)
Q Consensus 169 ~~l~~~~~~~~~~~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~---~~sG~I~~nG~~~~~~~--- 242 (875)
+++.+.++...+ +++.+|+|||+.+++||+++|+|||||||||||++|+|.++|+. .+.|+|.++|+++....
T Consensus 9 ~~i~~~~~~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~ 87 (257)
T PRK14246 9 DVFNISRLYLYI-NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIK 87 (257)
T ss_pred hheeeeeEEEec-CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHH
Confidence 345555555444 34679999999999999999999999999999999999998851 12245555555543322
Q ss_pred cCceEEEEecCCCCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHH
Q 002833 243 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 322 (875)
Q Consensus 243 ~~~~~~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL 322 (875)
.++.++|++|++.+++.+||+||+.+.....+... +. +....+++++
T Consensus 88 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~---------~~------------------------~~~~~~~~~~ 134 (257)
T PRK14246 88 LRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKE---------KR------------------------EIKKIVEECL 134 (257)
T ss_pred HhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCC---------HH------------------------HHHHHHHHHH
Confidence 24679999999999999999999988643221100 00 0112356678
Q ss_pred HHhCCCc----cccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEE
Q 002833 323 KILGLDI----CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIV 398 (875)
Q Consensus 323 ~~lgL~~----~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tvii 398 (875)
+.+||.+ ..+.. ++.||||||||++||++|+.+|++++|||||+|||..+...+.+.|+++.+ +.|+|+
T Consensus 135 ~~~~l~~~~~~~~~~~-----~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiil 207 (257)
T PRK14246 135 RKVGLWKEVYDRLNSP-----ASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN--EIAIVI 207 (257)
T ss_pred HHcCCCccchhhhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CcEEEE
Confidence 8889863 34444 446999999999999999999999999999999999999999999999864 588888
Q ss_pred eecCCchhHHhhcCeEEEEeCCeEEEecChhhHH
Q 002833 399 ALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVL 432 (875)
Q Consensus 399 si~q~~~ei~~lfD~vilL~~G~iv~~Gp~~~~~ 432 (875)
++|++. .+.++||++++|++|+++.+|+.+++.
T Consensus 208 vsh~~~-~~~~~~d~v~~l~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 208 VSHNPQ-QVARVADYVAFLYNGELVEWGSSNEIF 240 (257)
T ss_pred EECCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 887754 677899999999999999999988764
No 206
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.3e-36 Score=318.28 Aligned_cols=206 Identities=20% Similarity=0.315 Sum_probs=165.0
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC--CCCccEEEECCEeCCC-C---ccCceEEEEecCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNE-F---VPQRTCAYISQHDLHH 257 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~--~~~sG~I~~nG~~~~~-~---~~~~~~~yv~Q~d~~~ 257 (875)
+.+|+|+|+.|++||+++|+|||||||||||++|+|..+|. ...+|+|.++|.++.. . ..++.++|++|++.++
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~ 95 (249)
T PRK14253 16 NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPF 95 (249)
T ss_pred eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcC
Confidence 56999999999999999999999999999999999998752 0138999999998742 1 1245699999998888
Q ss_pred CCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCc----cccc
Q 002833 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CADT 333 (875)
Q Consensus 258 ~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~----~~dt 333 (875)
+ .||.||+.++....+...+ .+ ....+++.++.+|+.+ ..++
T Consensus 96 ~-~tv~~~l~~~~~~~~~~~~---------~~------------------------~~~~~~~~~~~~~l~~~~~~~~~~ 141 (249)
T PRK14253 96 P-MSIYENVAYGLRAQGIKDK---------KV------------------------LDEVVERSLRGAALWDEVKDRLKS 141 (249)
T ss_pred c-ccHHHHHHhHHHhcCCCch---------HH------------------------HHHHHHHHHHHcCCchhhhHHhhc
Confidence 7 8999999886432211000 00 0112345667777643 2333
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCe
Q 002833 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (875)
Q Consensus 334 ~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~ 413 (875)
. ...|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|+|++.|++ .++.++||+
T Consensus 142 ~-----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~-~~~~~~~d~ 213 (249)
T PRK14253 142 H-----AFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK--NYTIVIVTHSM-QQARRISDR 213 (249)
T ss_pred C-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEecCH-HHHHHhCCE
Confidence 3 346999999999999999999999999999999999999999999999975 47888887776 478889999
Q ss_pred EEEEeCCeEEEecChhhH
Q 002833 414 IILLSEGQIVYQGPRDNV 431 (875)
Q Consensus 414 vilL~~G~iv~~Gp~~~~ 431 (875)
+++|++|+++..|+.+++
T Consensus 214 i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 214 TAFFLMGELVEHDDTQVI 231 (249)
T ss_pred EEEEECCEEEEeCCHHHH
Confidence 999999999999998765
No 207
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.3e-36 Score=357.47 Aligned_cols=207 Identities=24% Similarity=0.292 Sum_probs=174.8
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc------cCceEEEEecCC--C
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHD--L 255 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~------~~~~~~yv~Q~d--~ 255 (875)
+.+|+|||+.|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.++||+|++ .
T Consensus 337 ~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~ 413 (623)
T PRK10261 337 VHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQ---GGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYAS 413 (623)
T ss_pred eEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhh
Confidence 46999999999999999999999999999999999999986 999999999875432 135799999986 5
Q ss_pred CCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCC-cccccc
Q 002833 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTM 334 (875)
Q Consensus 256 ~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~ 334 (875)
+++.+||.|++.+.....+... +. +....++++|+.+||. ...++.
T Consensus 414 l~~~~tv~~~l~~~~~~~~~~~---------~~------------------------~~~~~~~~~L~~~gL~~~~~~~~ 460 (623)
T PRK10261 414 LDPRQTVGDSIMEPLRVHGLLP---------GK------------------------AAAARVAWLLERVGLLPEHAWRY 460 (623)
T ss_pred cCCCCCHHHHHHHHHHHcCCCC---------HH------------------------HHHHHHHHHHHHcCCCHHHhhCC
Confidence 8899999999988654322100 00 0112356789999996 566776
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeE
Q 002833 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (875)
Q Consensus 335 vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~v 414 (875)
++ .|||||||||+||++|+.+|++|||||||+|||..++.++.+.|+++++..+.|+|+++|+ ...+.++||+|
T Consensus 461 ~~-----~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHd-l~~v~~~~dri 534 (623)
T PRK10261 461 PH-----EFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHD-MAVVERISHRV 534 (623)
T ss_pred cc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEE
Confidence 65 4999999999999999999999999999999999999999999999987668888888765 45788999999
Q ss_pred EEEeCCeEEEecChhhHH
Q 002833 415 ILLSEGQIVYQGPRDNVL 432 (875)
Q Consensus 415 ilL~~G~iv~~Gp~~~~~ 432 (875)
++|++|++++.|+++++.
T Consensus 535 ~vl~~G~iv~~g~~~~i~ 552 (623)
T PRK10261 535 AVMYLGQIVEIGPRRAVF 552 (623)
T ss_pred EEEECCEEEEecCHHHHh
Confidence 999999999999998873
No 208
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-35 Score=318.19 Aligned_cols=211 Identities=18% Similarity=0.298 Sum_probs=167.0
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC--CCCCCccEEEECCEeCCCCc-----cCceEEEEecCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEFV-----PQRTCAYISQHDLH 256 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~--~~~~~sG~I~~nG~~~~~~~-----~~~~~~yv~Q~d~~ 256 (875)
+++|+|+|+.|++||+++|+||||||||||+++|+|..+ |....+|+|+++|+++.... .++.++|++|++.+
T Consensus 18 ~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 97 (251)
T PRK14244 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNP 97 (251)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccc
Confidence 469999999999999999999999999999999999976 21124899999999875321 24579999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCcccccccc
Q 002833 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (875)
Q Consensus 257 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (875)
++. ||+||+.+....++.... .. +....++.+++.+||.+...+.+
T Consensus 98 ~~~-tv~~ni~~~~~~~~~~~~--------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~- 143 (251)
T PRK14244 98 FPK-SIYDNVAYGPKLHGLAKN--------KK------------------------KLDEIVEKSLTSVGLWEELGDRL- 143 (251)
T ss_pred ccC-CHHHHHHHHHHhcCCCCC--------HH------------------------HHHHHHHHHHHHcCCCchhhhHh-
Confidence 876 999999886432211000 00 00113456788999865322221
Q ss_pred CccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEE
Q 002833 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (875)
Q Consensus 337 ~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vil 416 (875)
+..++.|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++.+ +.|+|++.|++. ++.++||++++
T Consensus 144 ~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiiisH~~~-~~~~~~d~i~~ 220 (251)
T PRK14244 144 KDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK--NFTIIVVTHSMK-QAKKVSDRVAF 220 (251)
T ss_pred hcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCHH-HHHhhcCEEEE
Confidence 123456999999999999999999999999999999999999999999999853 789999887654 77789999999
Q ss_pred EeCCeEEEecChhhH
Q 002833 417 LSEGQIVYQGPRDNV 431 (875)
Q Consensus 417 L~~G~iv~~Gp~~~~ 431 (875)
|++|++++.|+++++
T Consensus 221 l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 221 FQSGRIVEYNTTQEI 235 (251)
T ss_pred EECCEEEEeCCHHHH
Confidence 999999999998766
No 209
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-35 Score=329.80 Aligned_cols=211 Identities=20% Similarity=0.303 Sum_probs=168.9
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC--CCCccEEEECCEeCCCC-----ccCceEEEEecCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~--~~~sG~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~ 256 (875)
..+|+|+|++|++||+++|+|||||||||||++|+|..++. ...+|+|.++|+++... ..++.++|++|++.+
T Consensus 95 ~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~ 174 (329)
T PRK14257 95 KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTP 174 (329)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCcc
Confidence 45999999999999999999999999999999999998631 12389999999998531 225679999999887
Q ss_pred CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCcccccccc
Q 002833 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (875)
Q Consensus 257 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (875)
++ .||+||+.|+....+.. .++. ....+..+++.++|.+..++.++
T Consensus 175 ~~-~ti~eNi~~~~~~~~~~----------~~~~-----------------------~~~~~~~~l~~~~L~~~l~~~~~ 220 (329)
T PRK14257 175 FE-MSIFDNVAYGPRNNGIN----------DRKI-----------------------LEKIVEKSLKSAALWDEVKDDLD 220 (329)
T ss_pred CC-CcHHHHHHhHHHhcCCC----------hHHH-----------------------HHHHHHHHHHHcCCcchhhhhhh
Confidence 75 79999999864322110 0000 01123456777777554444454
Q ss_pred CccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEE
Q 002833 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (875)
Q Consensus 337 ~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vil 416 (875)
+....|||||||||+|||||+.+|+||+|||||+|||+.+...+.++|+++.+ ++|+|++.|++. .+.++||+|++
T Consensus 221 -~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~~Tii~iTH~l~-~i~~~~Driiv 296 (329)
T PRK14257 221 -KAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK--KYSIIIVTHSMA-QAQRISDETVF 296 (329)
T ss_pred -CCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHH-HHHHhCCEEEE
Confidence 34567999999999999999999999999999999999999999999999875 588888877654 67788999999
Q ss_pred EeCCeEEEecChhhHH
Q 002833 417 LSEGQIVYQGPRDNVL 432 (875)
Q Consensus 417 L~~G~iv~~Gp~~~~~ 432 (875)
|++|+++..|+++++.
T Consensus 297 l~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 297 FYQGWIEEAGETKTIF 312 (329)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999999883
No 210
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=5.2e-36 Score=351.88 Aligned_cols=200 Identities=24% Similarity=0.356 Sum_probs=172.8
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc----CceEEEEecCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (875)
+.+|+|+|+.|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++|++|++.+++.
T Consensus 24 ~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 100 (510)
T PRK15439 24 VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPN 100 (510)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCC
Confidence 46999999999999999999999999999999999999986 9999999998764322 2469999999999999
Q ss_pred CCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCcc
Q 002833 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (875)
Q Consensus 260 lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (875)
+||+||+.|..... + +....++++++.+||.+..+..+++
T Consensus 101 ~tv~e~l~~~~~~~-------------~-------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-- 140 (510)
T PRK15439 101 LSVKENILFGLPKR-------------Q-------------------------ASMQKMKQLLAALGCQLDLDSSAGS-- 140 (510)
T ss_pred CcHHHHhhcccccc-------------h-------------------------HHHHHHHHHHHHcCCCccccCChhh--
Confidence 99999998853210 0 0012356788999999888877765
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeC
Q 002833 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (875)
Q Consensus 340 ~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~ 419 (875)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|.|+|++.|++ .++.++||+|++|++
T Consensus 141 ---LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiiivtHd~-~~~~~~~d~i~~l~~ 215 (510)
T PRK15439 141 ---LEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLA-QGVGIVFISHKL-PEIRQLADRISVMRD 215 (510)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999976 488888887654 477889999999999
Q ss_pred CeEEEecChhhH
Q 002833 420 GQIVYQGPRDNV 431 (875)
Q Consensus 420 G~iv~~Gp~~~~ 431 (875)
|++++.|+++++
T Consensus 216 G~i~~~g~~~~~ 227 (510)
T PRK15439 216 GTIALSGKTADL 227 (510)
T ss_pred CEEEEecChHHc
Confidence 999999998765
No 211
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=6.9e-36 Score=313.56 Aligned_cols=196 Identities=25% Similarity=0.381 Sum_probs=166.2
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc------cCceEEEEecCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLHH 257 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~------~~~~~~yv~Q~d~~~ 257 (875)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 94 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ---EGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLL 94 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhc
Confidence 56999999999999999999999999999999999999886 999999999875432 135799999999999
Q ss_pred CCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccC
Q 002833 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (875)
Q Consensus 258 ~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (875)
+++|+.||+.++....... ..+ +....++++++.+||.+..++.+.
T Consensus 95 ~~~t~~~n~~~~~~~~~~~---------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~- 140 (220)
T TIGR02982 95 GFLTARQNVQMALELQPNL---------SYQ------------------------EARERARAMLEAVGLGDHLDYYPH- 140 (220)
T ss_pred CCCCHHHHHHHHHHhccCC---------CHH------------------------HHHHHHHHHHHHcCChhhhhcChh-
Confidence 9999999999864322100 000 011235678899999887777665
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEE
Q 002833 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (875)
Q Consensus 338 ~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL 417 (875)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+..++|+|+++|++. +.++||+|++|
T Consensus 141 ----~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l 214 (220)
T TIGR02982 141 ----NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHM 214 (220)
T ss_pred ----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEE
Confidence 599999999999999999999999999999999999999999999998656899999988874 56899999999
Q ss_pred eCCeE
Q 002833 418 SEGQI 422 (875)
Q Consensus 418 ~~G~i 422 (875)
++|++
T Consensus 215 ~~g~~ 219 (220)
T TIGR02982 215 EDGKL 219 (220)
T ss_pred ECCEE
Confidence 99986
No 212
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=8e-36 Score=319.54 Aligned_cols=207 Identities=23% Similarity=0.347 Sum_probs=167.2
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEe-----CCCCcc-------CceEEEEe
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE-----LNEFVP-------QRTCAYIS 251 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~-----~~~~~~-------~~~~~yv~ 251 (875)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.+ +..... ++.++|++
T Consensus 16 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 92 (253)
T TIGR02323 16 GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD---HGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVH 92 (253)
T ss_pred ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEEecccccccccccCCHHHHHHhhhcceEEEE
Confidence 45899999999999999999999999999999999999986 9999999976 443221 24589999
Q ss_pred cCCC--CCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCC-
Q 002833 252 QHDL--HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD- 328 (875)
Q Consensus 252 Q~d~--~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~- 328 (875)
|++. ..+.+|+.||+.+......... .. +....++++++.+|+.
T Consensus 93 q~~~~~~~~~~~~~~~i~~~~~~~~~~~---------~~------------------------~~~~~~~~~l~~l~l~~ 139 (253)
T TIGR02323 93 QNPRDGLRMRVSAGANIGERLMAIGARH---------YG------------------------NIRAAAHDWLEEVEIDP 139 (253)
T ss_pred eCcccccCccccHHHHHHHHHHHhcccc---------hH------------------------HHHHHHHHHHHHcCCCh
Confidence 9864 4566799999875421110000 00 0012356788999997
Q ss_pred ccccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHH
Q 002833 329 ICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETY 408 (875)
Q Consensus 329 ~~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~ 408 (875)
...++.+. .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++ +++.
T Consensus 140 ~~~~~~~~-----~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~-~~~~ 213 (253)
T TIGR02323 140 TRIDDLPR-----AFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDL-GVAR 213 (253)
T ss_pred hhhhcCch-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHH
Confidence 35666655 59999999999999999999999999999999999999999999998765588999887654 4777
Q ss_pred hhcCeEEEEeCCeEEEecChhhHH
Q 002833 409 DLFDDIILLSEGQIVYQGPRDNVL 432 (875)
Q Consensus 409 ~lfD~vilL~~G~iv~~Gp~~~~~ 432 (875)
+++|++++|++|++++.|+.+++.
T Consensus 214 ~~~d~~~~l~~G~i~~~~~~~~~~ 237 (253)
T TIGR02323 214 LLAQRLLVMQQGRVVESGLTDQVL 237 (253)
T ss_pred HhcCEEEEEECCEEEEECCHHHHh
Confidence 899999999999999999987663
No 213
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-35 Score=319.54 Aligned_cols=213 Identities=22% Similarity=0.333 Sum_probs=169.2
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC--CCCccEEEECCEeCCCC-----ccCceEEEEecCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~--~~~sG~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~ 256 (875)
..+|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +..+|+|.++|+++... ..++.++|++|+..+
T Consensus 20 ~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l 99 (261)
T PRK14258 20 QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNL 99 (261)
T ss_pred eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCcc
Confidence 35999999999999999999999999999999999999873 12479999999986421 124569999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCcccccccc
Q 002833 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (875)
Q Consensus 257 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (875)
++ +||.||+.+.....+.. +..+ ....+..+++.+||.+..+...
T Consensus 100 ~~-~tv~enl~~~~~~~~~~-------------------~~~~--------------~~~~~~~~l~~~~l~~~~~~~~- 144 (261)
T PRK14258 100 FP-MSVYDNVAYGVKIVGWR-------------------PKLE--------------IDDIVESALKDADLWDEIKHKI- 144 (261)
T ss_pred Cc-ccHHHHHHHHHHhcCCC-------------------cHHH--------------HHHHHHHHHHHcCCcchhhhHh-
Confidence 87 89999998764322110 0000 0113456778888754221111
Q ss_pred CccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEE
Q 002833 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (875)
Q Consensus 337 ~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vil 416 (875)
+..+..|||||||||+||++|+.+|++|+|||||+|||..+...+.+.|+++++..+.|+|++.|++ .++.++||+|++
T Consensus 145 ~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~-~~i~~~~d~i~~ 223 (261)
T PRK14258 145 HKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNL-HQVSRLSDFTAF 223 (261)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhcCEEEE
Confidence 2234569999999999999999999999999999999999999999999998765578988887765 578899999999
Q ss_pred EeC-----CeEEEecChhhHH
Q 002833 417 LSE-----GQIVYQGPRDNVL 432 (875)
Q Consensus 417 L~~-----G~iv~~Gp~~~~~ 432 (875)
|++ |+++++|+++++.
T Consensus 224 l~~~~~~~G~i~~~~~~~~~~ 244 (261)
T PRK14258 224 FKGNENRIGQLVEFGLTKKIF 244 (261)
T ss_pred EccCCCcCceEEEeCCHHHHH
Confidence 999 9999999999873
No 214
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=5.4e-36 Score=290.80 Aligned_cols=200 Identities=25% Similarity=0.361 Sum_probs=175.7
Q ss_pred ccccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc-------cCceEEEEecC
Q 002833 181 KRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-------PQRTCAYISQH 253 (875)
Q Consensus 181 ~~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~-------~~~~~~yv~Q~ 253 (875)
....+||++|++.|++||-++|+|||||||||||-+|+|+..|+ +|+|.+.|+++.... ..+.+|+|+|.
T Consensus 20 ~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s---sGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQS 96 (228)
T COG4181 20 EGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQPLHKLDEDARAALRARHVGFVFQS 96 (228)
T ss_pred CcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCC---CceEEEcCcchhhcCHHHHHHhhccceeEEEEe
Confidence 45678999999999999999999999999999999999999997 999999999986543 23789999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccc
Q 002833 254 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (875)
Q Consensus 254 d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 333 (875)
..++|+||..||+...+.++|-..+ +........|+.+||.+-.+-
T Consensus 97 F~Lip~ltAlENV~lPleL~ge~~~----------------------------------~~~~~A~~lL~~vGLg~Rl~H 142 (228)
T COG4181 97 FHLIPNLTALENVALPLELRGESSA----------------------------------DSRAGAKALLEAVGLGKRLTH 142 (228)
T ss_pred eeccccchhhhhccchhhhcCCccc----------------------------------cHHHHHHHHHHHhCccccccc
Confidence 9999999999999998877653211 011234568999999988776
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCe
Q 002833 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (875)
Q Consensus 334 ~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~ 413 (875)
.++ .|||||+|||+||||++..|+|||.||||-+||..|..+|.++|-.+.++.|.|.|+.+|+|. ...-|||
T Consensus 143 yP~-----qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R 215 (228)
T COG4181 143 YPA-----QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDR 215 (228)
T ss_pred Ccc-----ccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhh
Confidence 665 599999999999999999999999999999999999999999999999999999999988764 6678999
Q ss_pred EEEEeCCeEEE
Q 002833 414 IILLSEGQIVY 424 (875)
Q Consensus 414 vilL~~G~iv~ 424 (875)
++-|.+|+++.
T Consensus 216 ~~r~~~G~l~~ 226 (228)
T COG4181 216 QLRLRSGRLVE 226 (228)
T ss_pred eeeeecceecc
Confidence 99999999974
No 215
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-35 Score=316.95 Aligned_cols=206 Identities=19% Similarity=0.279 Sum_probs=163.2
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC--CCCCCccEEEECCEeCCCC-----ccCceEEEEecCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~--~~~~~sG~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~ 256 (875)
+.+|+|+|++|++||+++|+|||||||||||++|+|..+ |+...+|+|.++|+++... ..++.++|++|++.+
T Consensus 18 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 97 (252)
T PRK14255 18 FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNP 97 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCcc
Confidence 469999999999999999999999999999999999875 3212389999999987421 124579999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCC----cccc
Q 002833 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICAD 332 (875)
Q Consensus 257 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~----~~~d 332 (875)
++ .||+||+.+.....+.... + . ....+.+.++.+++. +..+
T Consensus 98 ~~-~tv~~nl~~~~~~~~~~~~--------------------~--~-----------~~~~~~~~l~~~~l~~~i~~~~~ 143 (252)
T PRK14255 98 FP-FSIYENVIYGLRLAGVKDK--------------------A--V-----------LDEAVETSLKQAAIWDEVKDHLH 143 (252)
T ss_pred CC-CcHHHHHHHHHHHcCCCCH--------------------H--H-----------HHHHHHHHHHHcCCccchhhHHh
Confidence 87 6999999886543221000 0 0 001123455666653 2334
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcC
Q 002833 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (875)
Q Consensus 333 t~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD 412 (875)
..+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|+|++.|++ .++.+++|
T Consensus 144 ~~~-----~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~-~~~~~~~d 215 (252)
T PRK14255 144 ESA-----LSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD--QYTIILVTHSM-HQASRISD 215 (252)
T ss_pred cCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEECCH-HHHHHhCC
Confidence 444 45999999999999999999999999999999999999999999999965 47888877765 47788999
Q ss_pred eEEEEeCCeEEEecChhhH
Q 002833 413 DIILLSEGQIVYQGPRDNV 431 (875)
Q Consensus 413 ~vilL~~G~iv~~Gp~~~~ 431 (875)
+|++|++|+++.+|++.++
T Consensus 216 ~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 216 KTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred EEEEEECCEEEEeCCHHHH
Confidence 9999999999999998876
No 216
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=1.6e-35 Score=316.55 Aligned_cols=200 Identities=27% Similarity=0.404 Sum_probs=167.9
Q ss_pred cccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCCCH
Q 002833 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEMTV 262 (875)
Q Consensus 186 IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lTV 262 (875)
+|+|||+.|++|++++|+||||||||||+++|+|.++ . +|+|.++|+++..... ++.++|++|++.+++.+||
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv 86 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-G---SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPV 86 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-C---CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccH
Confidence 7999999999999999999999999999999999984 3 8999999998765332 3468999999888889999
Q ss_pred HHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCC
Q 002833 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (875)
Q Consensus 263 ~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (875)
+||+.+..... .. .. +....++++++.+||.+..++.++ .
T Consensus 87 ~~nl~~~~~~~-~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~ 126 (248)
T PRK03695 87 FQYLTLHQPDK-TR----------TE------------------------AVASALNEVAEALGLDDKLGRSVN-----Q 126 (248)
T ss_pred HHHHHhcCccC-CC----------cH------------------------HHHHHHHHHHHHcCCHhHhcCCcc-----c
Confidence 99998753210 00 00 001235678899999887777665 4
Q ss_pred CCHHHHHHHHHHHHHhc-------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEE
Q 002833 343 ISGGQKKRVTTGEMLVG-------TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (875)
Q Consensus 343 LSGGerkRVsIA~aLv~-------~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vi 415 (875)
|||||||||+||++|+. +|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|+. .++.++||+++
T Consensus 127 LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~~~tvi~~sH~~-~~~~~~~d~i~ 204 (248)
T PRK03695 127 LSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQ-QGIAVVMSSHDL-NHTLRHADRVW 204 (248)
T ss_pred CCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCH-HHHHHhCCEEE
Confidence 99999999999999997 6799999999999999999999999999975 478988887765 46889999999
Q ss_pred EEeCCeEEEecChhhH
Q 002833 416 LLSEGQIVYQGPRDNV 431 (875)
Q Consensus 416 lL~~G~iv~~Gp~~~~ 431 (875)
+|++|++++.|+.+++
T Consensus 205 ~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 205 LLKQGKLLASGRRDEV 220 (248)
T ss_pred EEECCEEEEECCHHHH
Confidence 9999999999998765
No 217
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-35 Score=321.06 Aligned_cols=210 Identities=22% Similarity=0.312 Sum_probs=165.9
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC--CCCccEEEECCEeCCCC-----ccCceEEEEecCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~--~~~sG~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~ 256 (875)
+.+|+|+|+.|++||+++|+||||||||||+++|+|++++. ...+|+|.++|.++... ..++.++|++|+..+
T Consensus 38 ~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l 117 (272)
T PRK14236 38 KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNP 117 (272)
T ss_pred eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCcc
Confidence 46999999999999999999999999999999999998741 01489999999987531 124679999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCcccccccc
Q 002833 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (875)
Q Consensus 257 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (875)
++. ||+||+.+.....+...+ .+ ....++++++.+++.....+..
T Consensus 118 ~~~-tv~enl~~~~~~~~~~~~---------~~------------------------~~~~~~~~l~~~~l~~~~~~~~- 162 (272)
T PRK14236 118 FPK-SIYENVVYGLRLQGINNR---------RV------------------------LDEAVERSLRGAALWDEVKDRL- 162 (272)
T ss_pred Ccc-cHHHHHHHHHHhcCCCcH---------HH------------------------HHHHHHHHHHHcCCChhHHHHh-
Confidence 886 999999886543221000 00 0112455677778753211111
Q ss_pred CccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEE
Q 002833 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (875)
Q Consensus 337 ~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vil 416 (875)
+...+.|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++++ +.|+|++.|++ .++.++||++++
T Consensus 163 ~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tiiivtH~~-~~~~~~~d~i~~ 239 (272)
T PRK14236 163 HENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS--KYTIVIVTHNM-QQAARVSDYTAF 239 (272)
T ss_pred hCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEeCCH-HHHHhhCCEEEE
Confidence 223456999999999999999999999999999999999999999999999974 57888877765 467889999999
Q ss_pred EeCCeEEEecChhhH
Q 002833 417 LSEGQIVYQGPRDNV 431 (875)
Q Consensus 417 L~~G~iv~~Gp~~~~ 431 (875)
|++|+++..|+++++
T Consensus 240 l~~G~i~~~g~~~~~ 254 (272)
T PRK14236 240 MYMGKLVEYGDTDTL 254 (272)
T ss_pred EECCEEEecCCHHHH
Confidence 999999999998766
No 218
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=2.7e-35 Score=350.62 Aligned_cols=208 Identities=25% Similarity=0.426 Sum_probs=171.1
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (875)
+.+|+|+|+.++|||.++|+|+||||||||+++|+|+++|+ +|+|.+||.++++... ++.++|++|++.+|+.
T Consensus 345 ~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~- 420 (571)
T TIGR02203 345 RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTLASLRRQVALVSQDVVLFND- 420 (571)
T ss_pred CccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEeHHhcCHHHHHhhceEEccCcccccc-
Confidence 46999999999999999999999999999999999999997 9999999999876543 4679999999877754
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccC
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (875)
|++|||.++.. ++.+.+++.+++...+ .++.++ .|++..||.+|+. .
T Consensus 421 Ti~~Ni~~~~~------------------------~~~~~~~i~~~l~~~~------l~~~i~--~lp~gldt~i~~~-g 467 (571)
T TIGR02203 421 TIANNIAYGRT------------------------EQADRAEIERALAAAY------AQDFVD--KLPLGLDTPIGEN-G 467 (571)
T ss_pred cHHHHHhcCCC------------------------CCCCHHHHHHHHHHcC------hHHHHH--hCcCcccceecCC-C
Confidence 99999987521 0112222222222211 122222 3566789999975 5
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCC
Q 002833 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (875)
Q Consensus 341 rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G 420 (875)
+.||||||||++|||+++.+|++++|||||++||+.++..|.+.|+++.+ ++|+|++.|++ +..+.||+|++|++|
T Consensus 468 ~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~--~~tiIiitH~~--~~~~~~D~ii~l~~g 543 (571)
T TIGR02203 468 VLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQ--GRTTLVIAHRL--STIEKADRIVVMDDG 543 (571)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhC--CCEEEEEehhh--HHHHhCCEEEEEeCC
Confidence 67999999999999999999999999999999999999999999998853 68999988887 567889999999999
Q ss_pred eEEEecChhhHH
Q 002833 421 QIVYQGPRDNVL 432 (875)
Q Consensus 421 ~iv~~Gp~~~~~ 432 (875)
+++..|+++++.
T Consensus 544 ~i~~~g~~~~l~ 555 (571)
T TIGR02203 544 RIVERGTHNELL 555 (571)
T ss_pred EEEeeCCHHHHH
Confidence 999999999874
No 219
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=3.5e-35 Score=350.79 Aligned_cols=207 Identities=24% Similarity=0.373 Sum_probs=170.2
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (875)
+.+|+|+|++++||+.++|+|+||||||||+|+|+|+++|+ +|+|.+||.++.+... ++.++||+|++.+|+ .
T Consensus 348 ~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 423 (588)
T PRK13657 348 RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQ---SGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFN-R 423 (588)
T ss_pred CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEhhhCCHHHHHhheEEEecCccccc-c
Confidence 35999999999999999999999999999999999999996 9999999999887643 478999999988776 5
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccC
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (875)
|++||+.++. |+.+.+++.+++...+ .+..++ .++...||.+|+. .
T Consensus 424 Ti~~Ni~~~~-------------------------~~~~d~~i~~al~~~~------l~~~i~--~lp~gldt~i~~~-g 469 (588)
T PRK13657 424 SIEDNIRVGR-------------------------PDATDEEMRAAAERAQ------AHDFIE--RKPDGYDTVVGER-G 469 (588)
T ss_pred cHHHHHhcCC-------------------------CCCCHHHHHHHHHHhC------HHHHHH--hCcccccchhcCC-C
Confidence 9999998752 1111122222222111 112222 3566788999864 5
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCC
Q 002833 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (875)
Q Consensus 341 rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G 420 (875)
+.||||||||++|||+|+.+|++++|||||++||+.++..|.+.|+++.+ ++|+|++.|++ +..+.+|+|++|++|
T Consensus 470 ~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~--~~tvIiitHr~--~~~~~~D~ii~l~~G 545 (588)
T PRK13657 470 RQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMK--GRTTFIIAHRL--STVRNADRILVFDNG 545 (588)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhc--CCEEEEEEecH--HHHHhCCEEEEEECC
Confidence 56999999999999999999999999999999999999999999998753 78999988887 467889999999999
Q ss_pred eEEEecChhhHH
Q 002833 421 QIVYQGPRDNVL 432 (875)
Q Consensus 421 ~iv~~Gp~~~~~ 432 (875)
+++..|+++++.
T Consensus 546 ~i~~~g~~~~l~ 557 (588)
T PRK13657 546 RVVESGSFDELV 557 (588)
T ss_pred EEEEeCCHHHHH
Confidence 999999998875
No 220
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=1.2e-35 Score=308.26 Aligned_cols=189 Identities=22% Similarity=0.314 Sum_probs=158.9
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc-------cCceEEEEecCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-------PQRTCAYISQHDLH 256 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~-------~~~~~~yv~Q~d~~ 256 (875)
+++|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+
T Consensus 11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 87 (206)
T TIGR03608 11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFD---SGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFAL 87 (206)
T ss_pred EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccchhhHHHHHHhCeeEEecchhh
Confidence 56999999999999999999999999999999999999986 999999999854221 24579999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCcccccccc
Q 002833 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (875)
Q Consensus 257 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (875)
++.+||+||+.+.....+.. +. +....++++++.+||++..++.+.
T Consensus 88 ~~~~t~~e~~~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~ 133 (206)
T TIGR03608 88 IENETVEENLDLGLKYKKLS----------KK------------------------EKREKKKEALEKVGLNLKLKQKIY 133 (206)
T ss_pred ccCCcHHHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCchhhhcCChh
Confidence 99999999999865432110 00 011235678899999888777765
Q ss_pred CccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEE
Q 002833 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (875)
Q Consensus 337 ~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vil 416 (875)
.||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++.+ .+.|+|++.|++. ..++||++++
T Consensus 134 -----~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~--~~~~~d~i~~ 205 (206)
T TIGR03608 134 -----ELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELND-EGKTIIIVTHDPE--VAKQADRVIE 205 (206)
T ss_pred -----hCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH--HHhhcCEEEe
Confidence 4999999999999999999999999999999999999999999999976 4889999888874 3478999987
Q ss_pred E
Q 002833 417 L 417 (875)
Q Consensus 417 L 417 (875)
|
T Consensus 206 l 206 (206)
T TIGR03608 206 L 206 (206)
T ss_pred C
Confidence 5
No 221
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-35 Score=321.44 Aligned_cols=226 Identities=23% Similarity=0.337 Sum_probs=174.7
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC--CCCccEEEECCEeCCCCc----cCceEEEEecCCCC
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEFV----PQRTCAYISQHDLH 256 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~--~~~sG~I~~nG~~~~~~~----~~~~~~yv~Q~d~~ 256 (875)
.+.+|+|+|+.|++||+++|+|||||||||||++|+|+++|. ...+|+|.++|.++.... .++.++|++|+..+
T Consensus 33 ~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l 112 (276)
T PRK14271 33 GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNP 112 (276)
T ss_pred CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCcc
Confidence 356999999999999999999999999999999999998751 013899999999875431 24679999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCcccccccc
Q 002833 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (875)
Q Consensus 257 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (875)
++ +||+||+.+......... .. +....+..+++.+||.+..++..
T Consensus 113 ~~-~tv~eni~~~~~~~~~~~---------~~------------------------~~~~~~~~~l~~~~l~~~~~~~l- 157 (276)
T PRK14271 113 FP-MSIMDNVLAGVRAHKLVP---------RK------------------------EFRGVAQARLTEVGLWDAVKDRL- 157 (276)
T ss_pred CC-ccHHHHHHHHHHhccCCC---------HH------------------------HHHHHHHHHHHHcCCCchhhhHh-
Confidence 87 899999987643211000 00 00112355778888875332221
Q ss_pred CccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEE
Q 002833 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (875)
Q Consensus 337 ~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vil 416 (875)
+..++.|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++.+ +.|+|++.|++ +++.+++|++++
T Consensus 158 ~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~-~~~~~~~dri~~ 234 (276)
T PRK14271 158 SDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--RLTVIIVTHNL-AQAARISDRAAL 234 (276)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhCCEEEE
Confidence 123456999999999999999999999999999999999999999999999875 47888887665 478889999999
Q ss_pred EeCCeEEEecChhhHHHHHHHcCCCCCCCCCHHHHHHH
Q 002833 417 LSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQE 454 (875)
Q Consensus 417 L~~G~iv~~Gp~~~~~~~F~~~Gf~~p~~~~~adfl~~ 454 (875)
|++|++++.|+++++.+ .|.....++|+-+
T Consensus 235 l~~G~i~~~g~~~~~~~--------~~~~~~~~~~~~~ 264 (276)
T PRK14271 235 FFDGRLVEEGPTEQLFS--------SPKHAETARYVAG 264 (276)
T ss_pred EECCEEEEeCCHHHHHh--------CcCcHHHHHHHhh
Confidence 99999999999887732 3444445555544
No 222
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=1.3e-35 Score=329.05 Aligned_cols=237 Identities=25% Similarity=0.390 Sum_probs=200.7
Q ss_pred cccCCCCCceEEEEeeeeEEEEeecccccccchhHHHHHHHHHHhhhccccCCcccccccccceeEEEeCCeEEEEEcCC
Q 002833 127 DRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPP 206 (875)
Q Consensus 127 ~~~g~~~p~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~IL~~vs~~i~pGe~~~llGpn 206 (875)
..+.++-|+-.+..+++++- . ...++++|+|+||.+.|||-++|+|||
T Consensus 324 ~~m~LP~P~g~L~Ve~l~~~---P-----------------------------Pg~~~pil~~isF~l~~G~~lgIIGPS 371 (580)
T COG4618 324 ERMPLPAPQGALSVERLTAA---P-----------------------------PGQKKPILKGISFALQAGEALGIIGPS 371 (580)
T ss_pred CCCCCCCCCceeeEeeeeec---C-----------------------------CCCCCcceecceeEecCCceEEEECCC
Confidence 34567777777888877652 0 112467999999999999999999999
Q ss_pred CCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCCCHHHHHHHhhhhcCCcchhHHHH
Q 002833 207 GAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLA 283 (875)
Q Consensus 207 GSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~ 283 (875)
|||||||.|+|.|..+|. +|.|.+||-+++.+.+ .+.+||.||+-.+|+. ||.||+. |+
T Consensus 372 gSGKSTLaR~lvG~w~p~---~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G-TIaeNIa---Rf----------- 433 (580)
T COG4618 372 GSGKSTLARLLVGIWPPT---SGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDG-TIAENIA---RF----------- 433 (580)
T ss_pred CccHHHHHHHHHcccccC---CCcEEecchhhhcCCHHHhccccCcCcccceecCC-cHHHHHH---hc-----------
Confidence 999999999999999996 9999999999987765 3789999998777765 9999994 21
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCCCHHHHHHHHHHHHHhcCCcE
Q 002833 284 ELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANV 363 (875)
Q Consensus 284 ~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~i 363 (875)
.++.+.+.+++++..++.++- ++.|.+.+||.||+. ..+||||||||+++||||.++|.+
T Consensus 434 -----------~~~~d~~kIieAA~lAgvHel--------Il~lP~GYdT~iG~~-G~~LSgGQRQRIaLARAlYG~P~l 493 (580)
T COG4618 434 -----------GEEADPEKVIEAARLAGVHEL--------ILRLPQGYDTRIGEG-GATLSGGQRQRIALARALYGDPFL 493 (580)
T ss_pred -----------cccCCHHHHHHHHHHcChHHH--------HHhCcCCccCccCCC-CCCCCchHHHHHHHHHHHcCCCcE
Confidence 234566677777776664432 578999999999964 567999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCeEEEecChhhHHHHHH
Q 002833 364 LYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFE 436 (875)
Q Consensus 364 LlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~iv~~Gp~~~~~~~F~ 436 (875)
++||||-++||+.-...+.+.|.++.. .|+|+|+..|.| .+...+|+|++|++|++-.+||+++++.-..
T Consensus 494 vVLDEPNsNLD~~GE~AL~~Ai~~~k~-rG~~vvviaHRP--s~L~~~Dkilvl~~G~~~~FG~r~eVLa~~~ 563 (580)
T COG4618 494 VVLDEPNSNLDSEGEAALAAAILAAKA-RGGTVVVIAHRP--SALASVDKILVLQDGRIAAFGPREEVLAKVL 563 (580)
T ss_pred EEecCCCCCcchhHHHHHHHHHHHHHH-cCCEEEEEecCH--HHHhhcceeeeecCChHHhcCCHHHHHHHhc
Confidence 999999999999999999999999875 588888888876 5889999999999999999999999987553
No 223
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=5.7e-36 Score=313.84 Aligned_cols=195 Identities=26% Similarity=0.422 Sum_probs=157.4
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (875)
+.+|+|+|+.|++|++++|+|||||||||||++|+|..+|+ +|+|.++|.++..... ++.++|++|++..++ .
T Consensus 17 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 92 (220)
T cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT---SGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFY-G 92 (220)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCeEEECCEEhHHCCHHHHHhhEEEeCCCCcccc-c
Confidence 46999999999999999999999999999999999999886 9999999998754322 357999999987776 6
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCcccccccc----
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG---- 336 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg---- 336 (875)
||.||+.+..... . ...+.++++.++|.+..+..+.
T Consensus 93 tv~e~l~~~~~~~---~-------------------------------------~~~~~~~l~~~~l~~~~~~~~~~~~~ 132 (220)
T cd03245 93 TLRDNITLGAPLA---D-------------------------------------DERILRAAELAGVTDFVNKHPNGLDL 132 (220)
T ss_pred hHHHHhhcCCCCC---C-------------------------------------HHHHHHHHHHcCcHHHHHhccccccc
Confidence 9999997742110 0 0012234555666554444321
Q ss_pred --CccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeE
Q 002833 337 --DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (875)
Q Consensus 337 --~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~v 414 (875)
......|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|++.|++. .. ++||++
T Consensus 133 ~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~-~~-~~~d~v 208 (220)
T cd03245 133 QIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG--DKTLIIITHRPS-LL-DLVDRI 208 (220)
T ss_pred eecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHH-HH-HhCCEE
Confidence 123456999999999999999999999999999999999999999999999875 378888888775 44 799999
Q ss_pred EEEeCCeEEEec
Q 002833 415 ILLSEGQIVYQG 426 (875)
Q Consensus 415 ilL~~G~iv~~G 426 (875)
++|++|++++.|
T Consensus 209 ~~l~~g~i~~~~ 220 (220)
T cd03245 209 IVMDSGRIVADG 220 (220)
T ss_pred EEEeCCeEeecC
Confidence 999999998764
No 224
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-36 Score=351.41 Aligned_cols=211 Identities=25% Similarity=0.282 Sum_probs=174.1
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc----CceEEEEecCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (875)
+++|+|||+.|++||+++|+||||||||||||+|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.
T Consensus 18 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 94 (510)
T PRK09700 18 VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDE 94 (510)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC---ccEEEECCEECCCCCHHHHHHCCeEEEeecccccCC
Confidence 46999999999999999999999999999999999999986 9999999998865432 2469999999999999
Q ss_pred CCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCcc
Q 002833 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (875)
Q Consensus 260 lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (875)
+||+||+.++....... ... ...... +....++++++.+||.+..++.+++
T Consensus 95 ~tv~e~l~~~~~~~~~~--~~~-~~~~~~------------------------~~~~~~~~~l~~~gl~~~~~~~~~~-- 145 (510)
T PRK09700 95 LTVLENLYIGRHLTKKV--CGV-NIIDWR------------------------EMRVRAAMMLLRVGLKVDLDEKVAN-- 145 (510)
T ss_pred CcHHHHhhhcccccccc--ccc-cccCHH------------------------HHHHHHHHHHHHcCCCCCcccchhh--
Confidence 99999998754210000 000 000000 0112356789999999888887765
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeC
Q 002833 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (875)
Q Consensus 340 ~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~ 419 (875)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|+ ..++.++||++++|++
T Consensus 146 ---LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsHd-~~~~~~~~d~v~~l~~ 220 (510)
T PRK09700 146 ---LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK-EGTAIVYISHK-LAEIRRICDRYTVMKD 220 (510)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCC-HHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999986 48888887765 4578889999999999
Q ss_pred CeEEEecChhhH
Q 002833 420 GQIVYQGPRDNV 431 (875)
Q Consensus 420 G~iv~~Gp~~~~ 431 (875)
|++++.|+++++
T Consensus 221 G~i~~~g~~~~~ 232 (510)
T PRK09700 221 GSSVCSGMVSDV 232 (510)
T ss_pred CEEeeecchhhC
Confidence 999999998765
No 225
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-35 Score=318.38 Aligned_cols=206 Identities=20% Similarity=0.300 Sum_probs=165.4
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCC--CccEEEECCEeCCCC-----ccCceEEEEecCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLR--ASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~--~sG~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~ 256 (875)
+.+|+|+|++|++||+++|+|+||||||||||+|+|.++++.. .+|+|.++|+++... ..++.++|++|++.+
T Consensus 20 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l 99 (259)
T PRK14260 20 SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNP 99 (259)
T ss_pred eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEeccccc
Confidence 4599999999999999999999999999999999999875311 389999999987431 123569999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCC----cccc
Q 002833 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICAD 332 (875)
Q Consensus 257 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~----~~~d 332 (875)
++ +||+||+.++...++.. ++.+ ....++.+++.+|+. +..+
T Consensus 100 ~~-~tv~enl~~~~~~~~~~-------------------~~~~--------------~~~~~~~~l~~~~l~~~l~~~~~ 145 (259)
T PRK14260 100 FP-MSIYENVAYGVRISAKL-------------------PQAD--------------LDEIVESALKGAALWQEVKDKLN 145 (259)
T ss_pred CC-ccHHHHHHHHHHHhcCC-------------------CHHH--------------HHHHHHHHHHHcCCcchhhhHhc
Confidence 87 89999998865432110 0000 011244567777773 3344
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcC
Q 002833 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (875)
Q Consensus 333 t~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD 412 (875)
+. ++.|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++++ +.|+|++.|++ +++.++||
T Consensus 146 ~~-----~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~-~~i~~~~d 217 (259)
T PRK14260 146 KS-----ALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS--ELTIAIVTHNM-QQATRVSD 217 (259)
T ss_pred CC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhcC
Confidence 44 446999999999999999999999999999999999999999999999864 57888887665 47889999
Q ss_pred eEEEEe-----CCeEEEecChhhH
Q 002833 413 DIILLS-----EGQIVYQGPRDNV 431 (875)
Q Consensus 413 ~vilL~-----~G~iv~~Gp~~~~ 431 (875)
++++|+ +|+++++|+++++
T Consensus 218 ~i~~l~~~~~~~G~i~~~~~~~~~ 241 (259)
T PRK14260 218 FTAFFSTDESRIGQMVEFGVTTQI 241 (259)
T ss_pred eEEEEeccCCCCceEEEeCCHHHH
Confidence 999998 5999999999886
No 226
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=4e-35 Score=347.15 Aligned_cols=208 Identities=25% Similarity=0.393 Sum_probs=169.8
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (875)
+++|+|+|++++||+.++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+++.
T Consensus 331 ~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~- 406 (544)
T TIGR01842 331 KPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPT---SGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPG- 406 (544)
T ss_pred ccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEehhhCCHHHHhhheEEecCCcccccc-
Confidence 46899999999999999999999999999999999999997 9999999999876543 5689999999888875
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccC
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (875)
|++||+.+... +.+.+++.+++... ..++.++. |++..||.+|+ ..
T Consensus 407 ti~~Ni~~~~~-------------------------~~~~~~~~~~~~~~------~~~~~i~~--l~~gl~t~~~~-~g 452 (544)
T TIGR01842 407 TVAENIARFGE-------------------------NADPEKIIEAAKLA------GVHELILR--LPDGYDTVIGP-GG 452 (544)
T ss_pred cHHHHHhccCC-------------------------CCCHHHHHHHHHHh------ChHHHHHh--CccccccccCC-Cc
Confidence 99999975321 01111222222211 12334443 34556788875 45
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCC
Q 002833 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (875)
Q Consensus 341 rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G 420 (875)
+.||||||||++|||+|+.+|++|+|||||+|||+.++.++.+.|+++.. .++|+|++.|++. ..+.||+|++|++|
T Consensus 453 ~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~ith~~~--~~~~~d~i~~l~~G 529 (544)
T TIGR01842 453 ATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKA-RGITVVVITHRPS--LLGCVDKILVLQDG 529 (544)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhh-CCCEEEEEeCCHH--HHHhCCEEEEEECC
Confidence 67999999999999999999999999999999999999999999999863 4789999988874 56789999999999
Q ss_pred eEEEecChhhHH
Q 002833 421 QIVYQGPRDNVL 432 (875)
Q Consensus 421 ~iv~~Gp~~~~~ 432 (875)
++++.|+++++.
T Consensus 530 ~i~~~g~~~~l~ 541 (544)
T TIGR01842 530 RIARFGERDEVL 541 (544)
T ss_pred EEEeeCCHHHHh
Confidence 999999988764
No 227
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-35 Score=318.10 Aligned_cols=205 Identities=19% Similarity=0.288 Sum_probs=162.6
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCC--CCccEEEECCEeCCCC-----ccCceEEEEecCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL--RASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~--~~sG~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~ 256 (875)
+.+|+|+|+.|++||+++|+|||||||||||++|+|++++.. ..+|+|.++|+++... ..++.++|++|+..+
T Consensus 33 ~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l 112 (274)
T PRK14265 33 FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNP 112 (274)
T ss_pred eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCcc
Confidence 359999999999999999999999999999999999986411 1389999999987421 124679999999887
Q ss_pred CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCC----cccc
Q 002833 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICAD 332 (875)
Q Consensus 257 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~----~~~d 332 (875)
++. ||.||+.+.....+.. . +. ...++..++.+++. +..+
T Consensus 113 ~~~-tv~~nl~~~~~~~~~~----------~-----------~~--------------~~~~~~~l~~~~l~~~l~~~~~ 156 (274)
T PRK14265 113 FPK-SIYENIAFAPRANGYK----------G-----------NL--------------DELVEDSLRRAAIWEEVKDKLK 156 (274)
T ss_pred ccc-cHHHHHHhHHHhcCch----------H-----------HH--------------HHHHHHHHHHcccchhhHHHhc
Confidence 875 9999998764322100 0 00 01123455666653 2334
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcC
Q 002833 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (875)
Q Consensus 333 t~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD 412 (875)
+. +..|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++++ +.|+|++.|++ +++.++||
T Consensus 157 ~~-----~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiii~sH~~-~~~~~~~d 228 (274)
T PRK14265 157 EK-----GTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE--QYTIIMVTHNM-QQASRVAD 228 (274)
T ss_pred CC-----cccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhCC
Confidence 43 346999999999999999999999999999999999999999999999964 57888877665 47889999
Q ss_pred eEEEEe---------CCeEEEecChhhHH
Q 002833 413 DIILLS---------EGQIVYQGPRDNVL 432 (875)
Q Consensus 413 ~vilL~---------~G~iv~~Gp~~~~~ 432 (875)
++++|+ +|++++.|+++++.
T Consensus 229 ~i~~l~~~~~~~~~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 229 WTAFFNTEIDEYGKRRGKLVEFSPTEQMF 257 (274)
T ss_pred EEEEEecccccccccCceEEEeCCHHHHH
Confidence 999998 89999999998873
No 228
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-35 Score=316.69 Aligned_cols=210 Identities=20% Similarity=0.294 Sum_probs=164.8
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC--CCCccEEEECCEeCCCC-----ccCceEEEEecCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~--~~~sG~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~ 256 (875)
+.+|+|+|++|++||+++|+|||||||||||++|+|..++. ...+|+|.++|+++... ..++.++|++|++.+
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 98 (253)
T PRK14261 19 KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNP 98 (253)
T ss_pred eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCcc
Confidence 46999999999999999999999999999999999987531 11389999999987542 124569999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCcccccccc
Q 002833 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (875)
Q Consensus 257 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (875)
++. ||+||+.|..+..+.... . + ....+..+++.++|.+...+..
T Consensus 99 ~~~-tv~eni~~~~~~~~~~~~---------~----------~--------------~~~~~~~~l~~~~l~~~l~~~~- 143 (253)
T PRK14261 99 FPK-SIYENVAYGPRIHGEKNK---------K----------T--------------LDTIVEKSLKGAALWDEVKDRL- 143 (253)
T ss_pred Ccc-cHHHHHHhhHHhcCCCCH---------H----------H--------------HHHHHHHHHHHhcCchhhHHHh-
Confidence 875 999999987543221000 0 0 0112445667777743211111
Q ss_pred CccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEE
Q 002833 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (875)
Q Consensus 337 ~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vil 416 (875)
+...+.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|+|++.|++ +++.+++|++++
T Consensus 144 ~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~--~~tvii~sh~~-~~~~~~~d~v~~ 220 (253)
T PRK14261 144 HDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK--EYTVIIVTHNM-QQAARVSDYTGF 220 (253)
T ss_pred hcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh--CceEEEEEcCH-HHHHhhCCEEEE
Confidence 223456999999999999999999999999999999999999999999999975 47888887765 467789999999
Q ss_pred EeCCeEEEecChhhH
Q 002833 417 LSEGQIVYQGPRDNV 431 (875)
Q Consensus 417 L~~G~iv~~Gp~~~~ 431 (875)
|++|+++..|+.+++
T Consensus 221 l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 221 MYLGKLIEFDKTTQI 235 (253)
T ss_pred EECCEEEEcCCHHHH
Confidence 999999999998876
No 229
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-35 Score=313.18 Aligned_cols=205 Identities=25% Similarity=0.401 Sum_probs=163.9
Q ss_pred ccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCCC
Q 002833 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEMT 261 (875)
Q Consensus 185 ~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 261 (875)
.+|+|+|+.+++|++++|+|||||||||||++|+|+++|+ +|+|+++|.++..... ++.++|++|+..+++ .|
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 91 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVD---SGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DT 91 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCC---CCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-cc
Confidence 6999999999999999999999999999999999999986 9999999998754321 456999999987776 69
Q ss_pred HHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHh--CCCccccccccCcc
Q 002833 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL--GLDICADTMVGDEM 339 (875)
Q Consensus 262 V~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l--gL~~~~dt~vg~~~ 339 (875)
|+||+.+...... . ..+ +. .. .....+..++.+ |+.+..+..+
T Consensus 92 v~enl~~~~~~~~---~----~~~---------------~~---~~------~~~~~~~~~~~l~~~l~~~~~~~~---- 136 (234)
T cd03251 92 VAENIAYGRPGAT---R----EEV---------------EE---AA------RAANAHEFIMELPEGYDTVIGERG---- 136 (234)
T ss_pred HHHHhhccCCCCC---H----HHH---------------HH---HH------HHcCcHHHHHhcccCcceeeccCC----
Confidence 9999987542110 0 000 00 00 001124455555 6665555544
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeC
Q 002833 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (875)
Q Consensus 340 ~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~ 419 (875)
..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ +.|+|++.|++. ++. .||++++|++
T Consensus 137 -~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~-~~~-~~d~v~~l~~ 211 (234)
T cd03251 137 -VKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK--NRTTFVIAHRLS-TIE-NADRIVVLED 211 (234)
T ss_pred -CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEecCHH-HHh-hCCEEEEecC
Confidence 45999999999999999999999999999999999999999999999863 789999888774 554 4999999999
Q ss_pred CeEEEecChhhHHH
Q 002833 420 GQIVYQGPRDNVLE 433 (875)
Q Consensus 420 G~iv~~Gp~~~~~~ 433 (875)
|++++.|+.+++.+
T Consensus 212 G~i~~~~~~~~~~~ 225 (234)
T cd03251 212 GKIVERGTHEELLA 225 (234)
T ss_pred CeEeeeCCHHHHHH
Confidence 99999999877643
No 230
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=1.2e-35 Score=306.14 Aligned_cols=171 Identities=40% Similarity=0.713 Sum_probs=153.0
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc--CCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL--GKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l--~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lT 261 (875)
+.+|+|+|+++++||+++|+||||||||||+++|+|.+ +|. +|+|.++|+++.....++.++|++|++.+++.+|
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGV---SGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLT 98 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEeCchHhhhheEEEccCcccCCCCCc
Confidence 46999999999999999999999999999999999999 876 9999999998764333567999999998999999
Q ss_pred HHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCC
Q 002833 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (875)
Q Consensus 262 V~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (875)
|+||+.+..++ .
T Consensus 99 ~~~~i~~~~~~-----------------------------------------------------~--------------- 110 (194)
T cd03213 99 VRETLMFAAKL-----------------------------------------------------R--------------- 110 (194)
T ss_pred HHHHHHHHHHh-----------------------------------------------------c---------------
Confidence 99999763210 0
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCe
Q 002833 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (875)
Q Consensus 342 gLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~ 421 (875)
.|||||||||+||++|+.+|++++|||||+|||..++..+.+.|+++.+ .+.|+|++.|++..++.++||++++|++|+
T Consensus 111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~v~~l~~G~ 189 (194)
T cd03213 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD-TGRTIICSIHQPSSEIFELFDKLLLLSQGR 189 (194)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCchHHHHHhcCEEEEEeCCE
Confidence 3999999999999999999999999999999999999999999999875 488999998887667888999999999999
Q ss_pred EEEec
Q 002833 422 IVYQG 426 (875)
Q Consensus 422 iv~~G 426 (875)
+++.|
T Consensus 190 i~~~~ 194 (194)
T cd03213 190 VIYFG 194 (194)
T ss_pred EEecC
Confidence 98765
No 231
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=3.6e-35 Score=356.88 Aligned_cols=208 Identities=25% Similarity=0.434 Sum_probs=172.0
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (875)
+.+|+|+|+.|+||+.++|+|+||||||||+|+|+|+++|+ +|+|++||++++++.. ++.++||+|++.+|+ .
T Consensus 470 ~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~---~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~-~ 545 (694)
T TIGR01846 470 PEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ---HGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFS-R 545 (694)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEehhhCCHHHHHHhCeEEccCCeehh-h
Confidence 45999999999999999999999999999999999999997 9999999999887643 467999999987776 5
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccC
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (875)
|++|||.++. |+.+.+++.+++...+ .++.++ .|+...||.+|+. .
T Consensus 546 ti~eNi~~~~-------------------------~~~~~~~i~~a~~~~~------l~~~i~--~lp~gl~t~i~~~-g 591 (694)
T TIGR01846 546 SIRDNIALCN-------------------------PGAPFEHVIHAAKLAG------AHDFIS--ELPQGYNTEVGEK-G 591 (694)
T ss_pred hHHHHHhcCC-------------------------CCCCHHHHHHHHHHcC------hHHHHH--hCcCccCcEecCC-C
Confidence 9999998742 1112223333332222 122222 3566778999864 5
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCC
Q 002833 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (875)
Q Consensus 341 rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G 420 (875)
..||||||||++|||+|+.+|++|+|||||+|||+.++.++.+.|+++. .++|+|++.|++. ..+.||+|++|++|
T Consensus 592 ~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~--~~~~~d~ii~l~~G 667 (694)
T TIGR01846 592 ANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC--RGRTVIIIAHRLS--TVRACDRIIVLEKG 667 (694)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh--CCCEEEEEeCChH--HHHhCCEEEEEeCC
Confidence 6799999999999999999999999999999999999999999999985 4789999988874 55779999999999
Q ss_pred eEEEecChhhHHH
Q 002833 421 QIVYQGPRDNVLE 433 (875)
Q Consensus 421 ~iv~~Gp~~~~~~ 433 (875)
+++++|+++++.+
T Consensus 668 ~i~~~g~~~~l~~ 680 (694)
T TIGR01846 668 QIAESGRHEELLA 680 (694)
T ss_pred EEEEeCCHHHHHH
Confidence 9999999988753
No 232
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-35 Score=317.64 Aligned_cols=211 Identities=19% Similarity=0.275 Sum_probs=168.1
Q ss_pred cccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC--CCCccEEEECCEeCCCC-----ccCceEEEEecCC
Q 002833 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEF-----VPQRTCAYISQHD 254 (875)
Q Consensus 182 ~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~--~~~sG~I~~nG~~~~~~-----~~~~~~~yv~Q~d 254 (875)
+++.+|+|+|+.|+|||+++|+||||||||||+++|+|+++|. ...+|+|+++|+++... ..++.++|++|++
T Consensus 19 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 98 (261)
T PRK14263 19 GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQP 98 (261)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCC
Confidence 3457999999999999999999999999999999999999761 11489999999987531 1245699999998
Q ss_pred CCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCcccccc
Q 002833 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTM 334 (875)
Q Consensus 255 ~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 334 (875)
.++ .+||.||+.++....+.. .. ....++++++.+||.+..+..
T Consensus 99 ~~~-~~tv~enl~~~~~~~~~~------~~-----------------------------~~~~~~~~l~~~~l~~~i~~~ 142 (261)
T PRK14263 99 NPF-SMSIFDNVAFGLRLNRYK------GD-----------------------------LGDRVKHALQGAALWDEVKDK 142 (261)
T ss_pred ccc-cccHHHHHHHHHhhcCch------HH-----------------------------HHHHHHHHHHHcCCchhhhhh
Confidence 777 599999999875432110 00 011345677888885433222
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeE
Q 002833 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (875)
Q Consensus 335 vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~v 414 (875)
.+ ...+.||||||||++||++|+.+|++|+|||||+|||+.+..++.+.|+++.+ +.|+|++.|++ .++.++||+|
T Consensus 143 ~~-~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~--~~tii~isH~~-~~i~~~~d~v 218 (261)
T PRK14263 143 LK-VSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK--DYTIALVTHNM-QQAIRVADTT 218 (261)
T ss_pred hh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCH-HHHHHhCCEE
Confidence 21 34567999999999999999999999999999999999999999999999953 67888877665 4688999999
Q ss_pred EEEe--------CCeEEEecChhhHH
Q 002833 415 ILLS--------EGQIVYQGPRDNVL 432 (875)
Q Consensus 415 ilL~--------~G~iv~~Gp~~~~~ 432 (875)
++|+ +|++++.|+.+++.
T Consensus 219 ~~l~~~~~~~~~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 219 AFFSVDISQGTRTGYLVEMGPTAQIF 244 (261)
T ss_pred EEEecccccccCCceEEEeCCHHHHH
Confidence 9996 89999999988763
No 233
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=4.8e-35 Score=348.10 Aligned_cols=207 Identities=25% Similarity=0.368 Sum_probs=169.7
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (875)
..+|+|+|++++||+.++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++|++|++.+|+.
T Consensus 328 ~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~- 403 (569)
T PRK10789 328 HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVS---EGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSD- 403 (569)
T ss_pred CccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCEEEECCEEHhhCCHHHHHhheEEEccCCeeccc-
Confidence 46999999999999999999999999999999999999997 9999999999876543 4679999999888864
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccC
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (875)
|++||+.++.. +.+.+++.+++...+. ++ ....|++..||.+|+. .
T Consensus 404 ti~~Ni~~~~~-------------------------~~~~~~~~~~~~~~~l------~~--~i~~lp~gl~t~~~~~-g 449 (569)
T PRK10789 404 TVANNIALGRP-------------------------DATQQEIEHVARLASV------HD--DILRLPQGYDTEVGER-G 449 (569)
T ss_pred cHHHHHhcCCC-------------------------CCCHHHHHHHHHHcCC------HH--HHHhCcCcccceecCC-C
Confidence 99999987521 0111111122211111 11 1235667789999864 5
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCC
Q 002833 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (875)
Q Consensus 341 rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G 420 (875)
..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++. .++|+|++.|++. ..+.+|+|++|++|
T Consensus 450 ~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tii~itH~~~--~~~~~d~i~~l~~G 525 (569)
T PRK10789 450 VMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG--EGRTVIISAHRLS--ALTEASEILVMQHG 525 (569)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecchh--HHHcCCEEEEEeCC
Confidence 6799999999999999999999999999999999999999999999975 4789999988873 56779999999999
Q ss_pred eEEEecChhhHH
Q 002833 421 QIVYQGPRDNVL 432 (875)
Q Consensus 421 ~iv~~Gp~~~~~ 432 (875)
+++.+|+++++.
T Consensus 526 ~i~~~g~~~~l~ 537 (569)
T PRK10789 526 HIAQRGNHDQLA 537 (569)
T ss_pred EEEEecCHHHHH
Confidence 999999998775
No 234
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=9.5e-36 Score=316.01 Aligned_cols=206 Identities=25% Similarity=0.353 Sum_probs=161.3
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (875)
+.+|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++ .
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 91 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPT---SGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-G 91 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCC---CCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-h
Confidence 46999999999999999999999999999999999999886 9999999988754321 356999999987776 6
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHh--CCCccccccccCc
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL--GLDICADTMVGDE 338 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l--gL~~~~dt~vg~~ 338 (875)
||+||+.+...... . ..+ + +... .......++.+ |+....+..+
T Consensus 92 tv~e~l~~~~~~~~---~----~~~---------------~---~~~~------~~~~~~~~~~l~~~~~~~~~~~~--- 137 (238)
T cd03249 92 TIAENIRYGKPDAT---D----EEV---------------E---EAAK------KANIHDFIMSLPDGYDTLVGERG--- 137 (238)
T ss_pred hHHHHhhccCCCCC---H----HHH---------------H---HHHH------HcChHHHHHhhccccceeeccCC---
Confidence 99999987532110 0 000 0 0000 00112233333 4544444443
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEe
Q 002833 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (875)
Q Consensus 339 ~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~ 418 (875)
+.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++. .+.|+|++.|++. ++ +.||++++|+
T Consensus 138 --~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~--~g~~vi~~sh~~~-~~-~~~d~v~~l~ 211 (238)
T cd03249 138 --SQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM--KGRTTIVIAHRLS-TI-RNADLIAVLQ 211 (238)
T ss_pred --ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCHH-HH-hhCCEEEEEE
Confidence 4699999999999999999999999999999999999999999999985 4789999887764 55 4899999999
Q ss_pred CCeEEEecChhhHHH
Q 002833 419 EGQIVYQGPRDNVLE 433 (875)
Q Consensus 419 ~G~iv~~Gp~~~~~~ 433 (875)
+|++++.|+.+++.+
T Consensus 212 ~G~i~~~~~~~~~~~ 226 (238)
T cd03249 212 NGQVVEQGTHDELMA 226 (238)
T ss_pred CCEEEEeCCHHHHhh
Confidence 999999999877654
No 235
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6e-36 Score=305.49 Aligned_cols=211 Identities=22% Similarity=0.312 Sum_probs=188.9
Q ss_pred cccccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCC
Q 002833 180 KKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGE 259 (875)
Q Consensus 180 ~~~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~ 259 (875)
+.+++++++|+||.++||+|.+++|||||||||.+++|.|+++|+ +|+|+++|.+++... ...|||.|++..++|.
T Consensus 11 ~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~---~G~I~~~g~~~~~~~-~~rIGyLPEERGLy~k 86 (300)
T COG4152 11 SFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEI-KNRIGYLPEERGLYPK 86 (300)
T ss_pred ccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCcc---CceEEEcCcchhhhh-hhhcccChhhhccCcc
Confidence 345678999999999999999999999999999999999999997 999999999987643 4679999999999999
Q ss_pred CCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCcc
Q 002833 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (875)
Q Consensus 260 lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (875)
+||.|.|.|-++++|+... +.....+++|+.+++......+|-
T Consensus 87 ~tv~dql~yla~LkGm~~~----------------------------------e~~~~~~~wLer~~i~~~~~~kIk--- 129 (300)
T COG4152 87 MTVEDQLKYLAELKGMPKA----------------------------------EIQKKLQAWLERLEIVGKKTKKIK--- 129 (300)
T ss_pred CcHHHHHHHHHHhcCCcHH----------------------------------HHHHHHHHHHHhccccccccchHH---
Confidence 9999999999999886421 122346789999999888877765
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeC
Q 002833 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (875)
Q Consensus 340 ~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~ 419 (875)
.||-|.+|++.+-.+++.+|++++||||+|||||.++..+-+.+.++.. .|.|||.|.|. ...+.++||++++|++
T Consensus 130 --~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~-~GatIifSsH~-Me~vEeLCD~llmL~k 205 (300)
T COG4152 130 --ELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKE-EGATIIFSSHR-MEHVEELCDRLLMLKK 205 (300)
T ss_pred --HhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHh-cCCEEEEecch-HHHHHHHhhhhheecC
Confidence 4999999999999999999999999999999999999999999999986 59999998754 6689999999999999
Q ss_pred CeEEEecChhhHHHHH
Q 002833 420 GQIVYQGPRDNVLEFF 435 (875)
Q Consensus 420 G~iv~~Gp~~~~~~~F 435 (875)
|+.|.+|+.+++..-|
T Consensus 206 G~~V~~G~v~~ir~~~ 221 (300)
T COG4152 206 GQTVLYGTVEDIRRSF 221 (300)
T ss_pred CceEEeccHHHHHHhc
Confidence 9999999999998754
No 236
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=1.3e-35 Score=312.66 Aligned_cols=199 Identities=22% Similarity=0.354 Sum_probs=163.3
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (875)
+++|+|+|+.|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++....+ ++.++|++|++.+++ .
T Consensus 20 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~ 95 (225)
T PRK10247 20 AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFG-D 95 (225)
T ss_pred ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCeEEECCEEcCcCCHHHHHhccEEEeccccccc-c
Confidence 46999999999999999999999999999999999999886 9999999998764332 357899999988887 4
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCC-ccccccccCcc
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVGDEM 339 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~~~ 339 (875)
||+||+.+.....+.. . ....++.+++.+||. ...++.++
T Consensus 96 tv~enl~~~~~~~~~~----------------------~--------------~~~~~~~~l~~~~l~~~~~~~~~~--- 136 (225)
T PRK10247 96 TVYDNLIFPWQIRNQQ----------------------P--------------DPAIFLDDLERFALPDTILTKNIA--- 136 (225)
T ss_pred cHHHHHHhHHhhcCCC----------------------h--------------HHHHHHHHHHHcCCChHHhcCCcc---
Confidence 9999998754322100 0 011245688999995 45666665
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEe-
Q 002833 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS- 418 (875)
Q Consensus 340 ~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~- 418 (875)
.|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++++..+.|+|++.|++. ++ +.||++++|+
T Consensus 137 --~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~-~~-~~~d~i~~l~~ 212 (225)
T PRK10247 137 --ELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD-EI-NHADKVITLQP 212 (225)
T ss_pred --cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH-HH-HhCCEEEEEec
Confidence 499999999999999999999999999999999999999999999998756889999887764 45 5699999994
Q ss_pred CCeEEEecChh
Q 002833 419 EGQIVYQGPRD 429 (875)
Q Consensus 419 ~G~iv~~Gp~~ 429 (875)
++..+.+|..+
T Consensus 213 ~~~~~~~~~~~ 223 (225)
T PRK10247 213 HAGEMQEARYE 223 (225)
T ss_pred ccchHhhhhhc
Confidence 56666776653
No 237
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-35 Score=311.33 Aligned_cols=205 Identities=22% Similarity=0.335 Sum_probs=160.3
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc---cCceEEEEecCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~l 260 (875)
+.+|+|+|+++++|++++|+|||||||||||++|+|+++|. +|+|.++|.++.... .++.++|++|+..+++.
T Consensus 16 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~- 91 (229)
T cd03254 16 KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ---KGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSG- 91 (229)
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhh-
Confidence 35999999999999999999999999999999999999886 999999999875432 14569999999877775
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHh--CCCccccccccCc
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL--GLDICADTMVGDE 338 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l--gL~~~~dt~vg~~ 338 (875)
||+||+.+...... .. +.+..++ ....+..++.+ |++...+..
T Consensus 92 tv~~~~~~~~~~~~---~~-------------------~~~~~~~---------~~~l~~~~~~~~~~~~~~~~~~---- 136 (229)
T cd03254 92 TIMENIRLGRPNAT---DE-------------------EVIEAAK---------EAGAHDFIMKLPNGYDTVLGEN---- 136 (229)
T ss_pred HHHHHHhccCCCCC---HH-------------------HHHHHHH---------HhChHHHHHhCcccccCHhhcC----
Confidence 99999987532100 00 0000000 00112333443 444433333
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEe
Q 002833 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (875)
Q Consensus 339 ~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~ 418 (875)
++.|||||||||.||++|+.+|++++|||||+|||+.+...+.+.|+++. .+.|+|+++|++. ++ ..||++++|+
T Consensus 137 -~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tii~~sh~~~-~~-~~~d~i~~l~ 211 (229)
T cd03254 137 -GGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM--KGRTSIIIAHRLS-TI-KNADKILVLD 211 (229)
T ss_pred -CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc--CCCEEEEEecCHH-HH-hhCCEEEEEe
Confidence 45699999999999999999999999999999999999999999999985 3789999888765 44 4699999999
Q ss_pred CCeEEEecChhhHH
Q 002833 419 EGQIVYQGPRDNVL 432 (875)
Q Consensus 419 ~G~iv~~Gp~~~~~ 432 (875)
+|++++.|+.+++.
T Consensus 212 ~g~~~~~~~~~~~~ 225 (229)
T cd03254 212 DGKIIEEGTHDELL 225 (229)
T ss_pred CCeEEEeCCHHHHH
Confidence 99999999887654
No 238
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-36 Score=312.46 Aligned_cols=195 Identities=28% Similarity=0.455 Sum_probs=171.8
Q ss_pred ceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCC-----cc--CceEEEEecCCCCCCCCC
Q 002833 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-----VP--QRTCAYISQHDLHHGEMT 261 (875)
Q Consensus 189 ~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~-----~~--~~~~~yv~Q~d~~~~~lT 261 (875)
++++.++.-.+|||-|+||||||||+|+|+|+.+|+ +|.|.+||..+.+. .+ +|.+|||+||-.+||++|
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd---eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc---ccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 567777665799999999999999999999999998 99999999876432 12 588999999999999999
Q ss_pred HHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCC
Q 002833 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (875)
Q Consensus 262 V~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (875)
|+.||.|+.... .....|++.+.||++|..+..+..
T Consensus 93 VrgNL~YG~~~~----------------------------------------~~~~fd~iv~lLGI~hLL~R~P~~---- 128 (352)
T COG4148 93 VRGNLRYGMWKS----------------------------------------MRAQFDQLVALLGIEHLLDRYPGT---- 128 (352)
T ss_pred Eecchhhhhccc----------------------------------------chHhHHHHHHHhCcHHHHhhCCCc----
Confidence 999999985421 011246788999999999987764
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCe
Q 002833 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (875)
Q Consensus 342 gLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~ 421 (875)
|||||||||+|||||++.|++|+||||.+.||-..+.+|+-.|.++.++.+..|+...| -..|+.+++|+|++|++|+
T Consensus 129 -LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSH-S~~Ev~RLAd~vV~le~Gk 206 (352)
T COG4148 129 -LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSH-SLDEVLRLADRVVVLENGK 206 (352)
T ss_pred -cCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEec-CHHHHHhhhheEEEecCCe
Confidence 99999999999999999999999999999999999999999999999988888888765 4569999999999999999
Q ss_pred EEEecChhhHH
Q 002833 422 IVYQGPRDNVL 432 (875)
Q Consensus 422 iv~~Gp~~~~~ 432 (875)
+...|+.+++.
T Consensus 207 V~A~g~~e~v~ 217 (352)
T COG4148 207 VKASGPLEEVW 217 (352)
T ss_pred EEecCcHHHHh
Confidence 99999999884
No 239
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-35 Score=319.37 Aligned_cols=206 Identities=17% Similarity=0.323 Sum_probs=161.7
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC--CCCCCccEEEECCEeCCCC-----ccCceEEEEecCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~--~~~~~sG~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~ 256 (875)
+.+|+|+|++|++||+++|+|+|||||||||++|+|.++ |....+|+|.++|+++... ..++.++|++|++.+
T Consensus 37 ~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 116 (271)
T PRK14238 37 DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNP 116 (271)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCcc
Confidence 459999999999999999999999999999999999987 2112399999999987421 124679999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCC----Ccccc
Q 002833 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGL----DICAD 332 (875)
Q Consensus 257 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL----~~~~d 332 (875)
++ .||+||+.++.+..+.... . . ....+..+++.+++ .+..+
T Consensus 117 ~~-~tv~eni~~~~~~~~~~~~---------~----------~--------------~~~~~~~~l~~~~~~~~l~~~~~ 162 (271)
T PRK14238 117 FP-KSIYDNVTYGPKIHGIKDK---------K----------T--------------LDEIVEKSLRGAAIWDELKDRLH 162 (271)
T ss_pred cc-ccHHHHHHHHHHhcCCCcH---------H----------H--------------HHHHHHHHHHHcCCcchHHHHHh
Confidence 87 4999999886432211000 0 0 00112344555543 22333
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcC
Q 002833 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (875)
Q Consensus 333 t~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD 412 (875)
.. ++.|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++.+ +.|+|++.|++ .++.++||
T Consensus 163 ~~-----~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~-~~i~~~~d 234 (271)
T PRK14238 163 DN-----AYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK--DYSIIIVTHNM-QQAARISD 234 (271)
T ss_pred cC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc--CCEEEEEEcCH-HHHHHhCC
Confidence 33 456999999999999999999999999999999999999999999999864 57888877664 46788999
Q ss_pred eEEEEeCCeEEEecChhhH
Q 002833 413 DIILLSEGQIVYQGPRDNV 431 (875)
Q Consensus 413 ~vilL~~G~iv~~Gp~~~~ 431 (875)
++++|++|++++.|+.+++
T Consensus 235 ~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 235 KTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred EEEEEECCEEEEeCCHHHH
Confidence 9999999999999998776
No 240
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-35 Score=320.99 Aligned_cols=206 Identities=24% Similarity=0.351 Sum_probs=166.2
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCC--CCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHH--GEMT 261 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~--~~lT 261 (875)
+.+|+|+|++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.....++.++|++|++.+. ...+
T Consensus 20 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~ 96 (272)
T PRK15056 20 HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLA---SGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVL 96 (272)
T ss_pred cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEhHHhhccceEEEeccccccccCCCcc
Confidence 46999999999999999999999999999999999999986 999999999875432234699999987542 2347
Q ss_pred HHHHHHHhhhhc-CCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccC
Q 002833 262 VRETLDFSGRCL-GVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (875)
Q Consensus 262 V~EtL~f~a~~~-~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (875)
++|++.++.... +... .+.. .....++++++.+||.+..++.+++
T Consensus 97 ~~~~i~~~~~~~~~~~~-----------------~~~~--------------~~~~~~~~~l~~~gl~~~~~~~~~~--- 142 (272)
T PRK15056 97 VEDVVMMGRYGHMGWLR-----------------RAKK--------------RDRQIVTAALARVDMVEFRHRQIGE--- 142 (272)
T ss_pred hhhheeccccccccccc-----------------CCCH--------------HHHHHHHHHHHHcCChhHhcCCccc---
Confidence 899886542100 0000 0000 0112346688999999888887765
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCC
Q 002833 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (875)
Q Consensus 341 rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G 420 (875)
|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++++ .+.|+|++.|++ .++.++||+++++ +|
T Consensus 143 --LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~g~tviivsH~~-~~~~~~~d~v~~~-~G 217 (272)
T PRK15056 143 --LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRD-EGKTMLVSTHNL-GSVTEFCDYTVMV-KG 217 (272)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHhCCEEEEE-CC
Confidence 999999999999999999999999999999999999999999999976 478888887665 4778899999877 89
Q ss_pred eEEEecChhhH
Q 002833 421 QIVYQGPRDNV 431 (875)
Q Consensus 421 ~iv~~Gp~~~~ 431 (875)
++++.|+++++
T Consensus 218 ~i~~~g~~~~~ 228 (272)
T PRK15056 218 TVLASGPTETT 228 (272)
T ss_pred EEEeecCHHhc
Confidence 99999998765
No 241
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2.2e-35 Score=348.19 Aligned_cols=207 Identities=23% Similarity=0.331 Sum_probs=171.4
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc------CceEEEEecCC--C
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP------QRTCAYISQHD--L 255 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~------~~~~~yv~Q~d--~ 255 (875)
+.+|+|||++|++||+++|+||||||||||||+|+|+++ + +|+|+++|+++..... ++.++|++|+. .
T Consensus 299 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 374 (529)
T PRK15134 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-S---QGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSS 374 (529)
T ss_pred ceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-C---CcEEEECCEEccccchhhHHHhhhceEEEEeCchhh
Confidence 579999999999999999999999999999999999984 4 8999999998754321 34689999986 4
Q ss_pred CCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCC-cccccc
Q 002833 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTM 334 (875)
Q Consensus 256 ~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~ 334 (875)
+++.+||.||+.++....+.. ..+. +....++++|+.+||. ...+..
T Consensus 375 l~~~~tv~e~l~~~~~~~~~~--------~~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~ 422 (529)
T PRK15134 375 LNPRLNVLQIIEEGLRVHQPT--------LSAA------------------------QREQQVIAVMEEVGLDPETRHRY 422 (529)
T ss_pred cCCcccHHHHHHHHHHhcccc--------CChH------------------------HHHHHHHHHHHHcCCCHHHHhcC
Confidence 788899999998864322100 0000 0112356789999997 467777
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeE
Q 002833 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (875)
Q Consensus 335 vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~v 414 (875)
+++ |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|+ ..++.++||++
T Consensus 423 ~~~-----LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd-~~~~~~~~d~i 496 (529)
T PRK15134 423 PAE-----FSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHD-LHVVRALCHQV 496 (529)
T ss_pred Ccc-----CCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCC-HHHHHHhcCeE
Confidence 664 999999999999999999999999999999999999999999999987557888887665 45788899999
Q ss_pred EEEeCCeEEEecChhhHH
Q 002833 415 ILLSEGQIVYQGPRDNVL 432 (875)
Q Consensus 415 ilL~~G~iv~~Gp~~~~~ 432 (875)
++|++|+++..|+++++.
T Consensus 497 ~~l~~G~i~~~~~~~~~~ 514 (529)
T PRK15134 497 IVLRQGEVVEQGDCERVF 514 (529)
T ss_pred EEEECCEEEEEcCHHHHh
Confidence 999999999999988773
No 242
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=1.2e-34 Score=345.49 Aligned_cols=208 Identities=23% Similarity=0.339 Sum_probs=168.0
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (875)
+++|+|+|+.+++|+.++|+||||||||||+++|+|.++|+ +|+|.+||.++.+... ++.++||+|++.+++ .
T Consensus 348 ~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~-~ 423 (585)
T TIGR01192 348 SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPT---VGQILIDGIDINTVTRESLRKSIATVFQDAGLFN-R 423 (585)
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCC---CCEEEECCEEhhhCCHHHHHhheEEEccCCccCc-c
Confidence 45899999999999999999999999999999999999996 9999999999876542 467999999987775 6
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccC
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (875)
|++||+.++.. +.+.+++.+++...+ .++. ...+....||.+|+. .
T Consensus 424 ti~~Ni~~~~~-------------------------~~~~~~~~~a~~~~~------~~~~--i~~l~~g~~t~~~~~-~ 469 (585)
T TIGR01192 424 SIRENIRLGRE-------------------------GATDEEVYEAAKAAA------AHDF--ILKRSNGYDTLVGER-G 469 (585)
T ss_pred cHHHHHhcCCC-------------------------CCCHHHHHHHHHHhC------cHHH--HHhccccccchhcCC-C
Confidence 99999987521 111112222221111 1111 123455667888763 5
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCC
Q 002833 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (875)
Q Consensus 341 rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G 420 (875)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. .++|+|++.|++. ..+.||+|++|++|
T Consensus 470 ~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~--~~~tvI~isH~~~--~~~~~d~i~~l~~G 545 (585)
T TIGR01192 470 NRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR--KNRTTFIIAHRLS--TVRNADLVLFLDQG 545 (585)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcChH--HHHcCCEEEEEECC
Confidence 6799999999999999999999999999999999999999999999874 3789999988873 45779999999999
Q ss_pred eEEEecChhhHHH
Q 002833 421 QIVYQGPRDNVLE 433 (875)
Q Consensus 421 ~iv~~Gp~~~~~~ 433 (875)
+++..|+++++.+
T Consensus 546 ~i~~~g~~~~l~~ 558 (585)
T TIGR01192 546 RLIEKGSFQELIQ 558 (585)
T ss_pred EEEEECCHHHHHH
Confidence 9999999987753
No 243
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=4.8e-35 Score=376.07 Aligned_cols=212 Identities=26% Similarity=0.392 Sum_probs=175.3
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC---------------------------------------
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--------------------------------------- 224 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~--------------------------------------- 224 (875)
.+||+|+|++|+||+.+||+||||||||||+++|.|+++|.
T Consensus 1181 ~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1260 (1466)
T PTZ00265 1181 VPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSL 1260 (1466)
T ss_pred CccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccc
Confidence 46999999999999999999999999999999999999982
Q ss_pred ------------CCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHH
Q 002833 225 ------------LRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRRE 289 (875)
Q Consensus 225 ------------~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e 289 (875)
...+|+|++||+++.++.. ++.++||+|++.+|+ .||+|||.|+.
T Consensus 1261 ~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIreNI~~g~------------------- 1320 (1466)
T PTZ00265 1261 TKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIYENIKFGK------------------- 1320 (1466)
T ss_pred ccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHHHHHhcCC-------------------
Confidence 0148999999999987653 578999999988875 69999999862
Q ss_pred HhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCC
Q 002833 290 KQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEI 369 (875)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEP 369 (875)
++.+.+++.+|+..++.+. . +-.|++..||.||+ ....||||||||++|||||+.+|+||+||||
T Consensus 1321 ------~~at~eeI~~A~k~A~l~~------f--I~~LP~GydT~VGe-~G~~LSGGQkQRIaIARALlr~p~ILLLDEa 1385 (1466)
T PTZ00265 1321 ------EDATREDVKRACKFAAIDE------F--IESLPNKYDTNVGP-YGKSLSGGQKQRIAIARALLREPKILLLDEA 1385 (1466)
T ss_pred ------CCCCHHHHHHHHHHcCCHH------H--HHhCccccCCccCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 1122233444444333222 1 23688899999996 4556999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeC----CeEE-EecChhhHH
Q 002833 370 STGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE----GQIV-YQGPRDNVL 432 (875)
Q Consensus 370 TsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~----G~iv-~~Gp~~~~~ 432 (875)
||+||+.++..|.+.|+++.+..++|+|++.|++ ++.+.||+|++|++ |+++ ++|++++++
T Consensus 1386 TSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRl--sti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1386 TSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRI--ASIKRSDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred ccccCHHHHHHHHHHHHHHhccCCCEEEEEechH--HHHHhCCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence 9999999999999999998533478999988876 56788999999999 9955 899999885
No 244
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.5e-35 Score=380.93 Aligned_cols=222 Identities=25% Similarity=0.352 Sum_probs=189.6
Q ss_pred hhhccccCCccc-ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCC--ccCceE
Q 002833 171 LGLLHLVPSKKR-SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF--VPQRTC 247 (875)
Q Consensus 171 l~~~~~~~~~~~-~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~--~~~~~~ 247 (875)
+.+.++.+.+.+ .+.+|+|||+.|++||+++|+||||||||||+|+|+|.++|+ +|+|.++|+++... ..++.+
T Consensus 1938 L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~pt---sG~I~i~G~~i~~~~~~~r~~I 2014 (2272)
T TIGR01257 1938 LRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVT---SGDATVAGKSILTNISDVHQNM 2014 (2272)
T ss_pred EEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECcchHHHHhhhE
Confidence 445555554443 367999999999999999999999999999999999999997 99999999987531 124679
Q ss_pred EEEecCCCCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCC
Q 002833 248 AYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGL 327 (875)
Q Consensus 248 ~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL 327 (875)
||++|++.+++.+||+|+|.+.++.++.... +.+..++++|+.+||
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~----------------------------------~~~~~v~~lLe~lgL 2060 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAE----------------------------------EIEKVANWSIQSLGL 2060 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHHhcCCCHH----------------------------------HHHHHHHHHHHHcCC
Confidence 9999999999999999999987766543110 011235678999999
Q ss_pred CccccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhH
Q 002833 328 DICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPET 407 (875)
Q Consensus 328 ~~~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei 407 (875)
.+.+|+.++. |||||||||+||+||+++|++|||||||+|||+.++..+.+.|++++++ |+|+|++.|+ .+++
T Consensus 2061 ~~~~dk~~~~-----LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~-g~TIILtTH~-mee~ 2133 (2272)
T TIGR01257 2061 SLYADRLAGT-----YSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIRE-GRAVVLTSHS-MEEC 2133 (2272)
T ss_pred HHHhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCC-HHHH
Confidence 9998888875 9999999999999999999999999999999999999999999999764 8898888755 5689
Q ss_pred HhhcCeEEEEeCCeEEEecChhhHHHHHH
Q 002833 408 YDLFDDIILLSEGQIVYQGPRDNVLEFFE 436 (875)
Q Consensus 408 ~~lfD~vilL~~G~iv~~Gp~~~~~~~F~ 436 (875)
..+||+|++|.+|++++.|+++++..-|.
T Consensus 2134 e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~g 2162 (2272)
T TIGR01257 2134 EALCTRLAIMVKGAFQCLGTIQHLKSKFG 2162 (2272)
T ss_pred HHhCCEEEEEECCEEEEECCHHHHHHHhC
Confidence 99999999999999999999999987774
No 245
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=4.4e-35 Score=308.58 Aligned_cols=192 Identities=28% Similarity=0.343 Sum_probs=158.0
Q ss_pred cccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCC
Q 002833 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261 (875)
Q Consensus 182 ~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lT 261 (875)
+.+++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|++.... .+...+.+.+|
T Consensus 33 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~---------~~~~~~~~~~t 100 (224)
T cd03220 33 GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPD---SGTVTVRGRVSSLL---------GLGGGFNPELT 100 (224)
T ss_pred CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEchhh---------cccccCCCCCc
Confidence 4567999999999999999999999999999999999999986 99999999875321 11223456789
Q ss_pred HHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCC
Q 002833 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (875)
Q Consensus 262 V~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (875)
|+||+.+.....+.. .. +....++++++.+||++..++.+++
T Consensus 101 v~enl~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~---- 142 (224)
T cd03220 101 GRENIYLNGRLLGLS----------RK------------------------EIDEKIDEIIEFSELGDFIDLPVKT---- 142 (224)
T ss_pred HHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCChhhhhCChhh----
Confidence 999998764322110 00 0011346678899999888887764
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCe
Q 002833 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (875)
Q Consensus 342 gLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~ 421 (875)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++. +.|+|++.|++ .++.+++|++++|++|+
T Consensus 143 -LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~ 219 (224)
T cd03220 143 -YSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ-GKTVILVSHDP-SSIKRLCDRALVLEKGK 219 (224)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCH-HHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999999764 78888887765 46778999999999999
Q ss_pred EEEec
Q 002833 422 IVYQG 426 (875)
Q Consensus 422 iv~~G 426 (875)
+++.|
T Consensus 220 i~~~g 224 (224)
T cd03220 220 IRFDG 224 (224)
T ss_pred EEecC
Confidence 98765
No 246
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-35 Score=319.60 Aligned_cols=204 Identities=20% Similarity=0.310 Sum_probs=164.1
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCC--CCccEEEECCEeCCCC-----ccCceEEEEecCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL--RASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~--~~sG~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~ 256 (875)
+.+|+|+|+.|++||+++|+|||||||||||++|+|++++.. ..+|+|.++|.++... ..++.++|++|+..+
T Consensus 52 ~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l 131 (285)
T PRK14254 52 EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNP 131 (285)
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCcc
Confidence 469999999999999999999999999999999999986310 1389999999987431 124679999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCc----ccc
Q 002833 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CAD 332 (875)
Q Consensus 257 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~----~~d 332 (875)
++. ||.||+.+.....+... + ....++++++.+||.+ ..+
T Consensus 132 ~~~-tv~enl~~~~~~~~~~~---------------------~--------------~~~~~~~~l~~~~l~~~i~~~~~ 175 (285)
T PRK14254 132 FPK-SIYDNVAYGLKIQGYDG---------------------D--------------IDERVEESLRRAALWDEVKDQLD 175 (285)
T ss_pred CcC-CHHHHHHHHHHHcCCcH---------------------H--------------HHHHHHHHHHHcCCCchhHHHHh
Confidence 875 99999988654322100 0 0112456788888853 344
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcC
Q 002833 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (875)
Q Consensus 333 t~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD 412 (875)
..+ ..|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++++ +.|+|++.|++ .++.+++|
T Consensus 176 ~~~-----~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~--~~tiii~tH~~-~~i~~~~d 247 (285)
T PRK14254 176 SSG-----LDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE--EYTVVIVTHNM-QQAARISD 247 (285)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHhhcC
Confidence 444 45999999999999999999999999999999999999999999999975 36888877665 47788999
Q ss_pred eEE-EEeCCeEEEecChhhH
Q 002833 413 DII-LLSEGQIVYQGPRDNV 431 (875)
Q Consensus 413 ~vi-lL~~G~iv~~Gp~~~~ 431 (875)
+++ +|++|+++..|+.+++
T Consensus 248 ri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 248 KTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred EEEEEeeCCEEEEeCCHHHH
Confidence 975 6799999999998765
No 247
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-35 Score=316.66 Aligned_cols=205 Identities=19% Similarity=0.303 Sum_probs=162.0
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCC--CCCCccEEEECCEeCCC--C---ccCceEEEEecCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGK--DLRASGKITYCGHELNE--F---VPQRTCAYISQHDLH 256 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~--~~~~sG~I~~nG~~~~~--~---~~~~~~~yv~Q~d~~ 256 (875)
+++|+|+|++|++||+++|+|||||||||||++|+|++++ ....+|+|.++|+++.. . ..++.++|++|+..+
T Consensus 23 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 102 (264)
T PRK14243 23 FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNP 102 (264)
T ss_pred EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCcc
Confidence 4699999999999999999999999999999999998763 11138999999998742 1 114569999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCc----ccc
Q 002833 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CAD 332 (875)
Q Consensus 257 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~----~~d 332 (875)
++ .||.||+.+..+..+... . ....++.+++.+++.+ ..+
T Consensus 103 ~~-~tv~enl~~~~~~~~~~~------~-----------------------------~~~~~~~~l~~~~l~~~l~~~~~ 146 (264)
T PRK14243 103 FP-KSIYDNIAYGARINGYKG------D-----------------------------MDELVERSLRQAALWDEVKDKLK 146 (264)
T ss_pred cc-ccHHHHHHhhhhhcCcch------H-----------------------------HHHHHHHHHHHhCchhhHHHHhc
Confidence 87 499999988654321100 0 0011233455555532 233
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcC
Q 002833 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (875)
Q Consensus 333 t~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD 412 (875)
.. ++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|++.|+ .+++.++||
T Consensus 147 ~~-----~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tvi~vtH~-~~~~~~~~d 218 (264)
T PRK14243 147 QS-----GLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE--QYTIIIVTHN-MQQAARVSD 218 (264)
T ss_pred CC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecC-HHHHHHhCC
Confidence 33 445999999999999999999999999999999999999999999999975 4788887765 457889999
Q ss_pred eEEEEe---------CCeEEEecChhhHH
Q 002833 413 DIILLS---------EGQIVYQGPRDNVL 432 (875)
Q Consensus 413 ~vilL~---------~G~iv~~Gp~~~~~ 432 (875)
+|++|+ +|++++.|+++++.
T Consensus 219 ~v~~l~~~~~~~~~~~g~i~~~~~~~~~~ 247 (264)
T PRK14243 219 MTAFFNVELTEGGGRYGYLVEFDRTEKIF 247 (264)
T ss_pred EEEEEecccccccccCceEEEeCCHHHHH
Confidence 999998 89999999998873
No 248
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3e-35 Score=302.61 Aligned_cols=170 Identities=39% Similarity=0.679 Sum_probs=150.3
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC--CCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~--~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lT 261 (875)
+++|+|+|+++++||+++|+|||||||||||++|+|.+. ++ +|+|.++|+++. ...++.++|++|++.+++.+|
T Consensus 20 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~---~G~i~~~g~~~~-~~~~~~i~~~~q~~~~~~~~t 95 (192)
T cd03232 20 RQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVI---TGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLT 95 (192)
T ss_pred eEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCc---ceEEEECCEehH-HHhhhceEEecccCccccCCc
Confidence 469999999999999999999999999999999999863 44 999999999875 223467999999999999999
Q ss_pred HHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCC
Q 002833 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (875)
Q Consensus 262 V~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (875)
|+||+.++.. ++
T Consensus 96 v~~~l~~~~~--------------------------------------------------~~------------------ 107 (192)
T cd03232 96 VREALRFSAL--------------------------------------------------LR------------------ 107 (192)
T ss_pred HHHHHHHHHH--------------------------------------------------Hh------------------
Confidence 9999976410 00
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeC-C
Q 002833 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE-G 420 (875)
Q Consensus 342 gLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~-G 420 (875)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|+++|++..++.+.||++++|++ |
T Consensus 108 ~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiiivtH~~~~~~~~~~d~i~~l~~~g 186 (192)
T cd03232 108 GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLAD-SGQAILCTIHQPSASIFEKFDRLLLLKRGG 186 (192)
T ss_pred cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHH-cCCEEEEEEcCChHHHHhhCCEEEEEcCCC
Confidence 3999999999999999999999999999999999999999999999876 4889999988876557889999999999 9
Q ss_pred eEEEec
Q 002833 421 QIVYQG 426 (875)
Q Consensus 421 ~iv~~G 426 (875)
++++.|
T Consensus 187 ~i~~~g 192 (192)
T cd03232 187 KTVYFG 192 (192)
T ss_pred eEEeCC
Confidence 999876
No 249
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=2.8e-35 Score=335.72 Aligned_cols=208 Identities=28% Similarity=0.371 Sum_probs=176.2
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCC-----ccCceEEEEecCC--C
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-----VPQRTCAYISQHD--L 255 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~-----~~~~~~~yv~Q~d--~ 255 (875)
...+++||||.+++||+++|+|+||||||||.++|+|+++|+ +|+|.++|.+.+-. ..++.+-+|+|++ .
T Consensus 303 ~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~---~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~S 379 (539)
T COG1123 303 EVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS---SGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSS 379 (539)
T ss_pred ceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEEeCcccccccchhhhhhhheEEEEeCcccc
Confidence 457899999999999999999999999999999999999996 99999999872111 1135678888885 6
Q ss_pred CCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccc
Q 002833 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335 (875)
Q Consensus 256 ~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v 335 (875)
+.|.+||+++|.-....++.... .+.+.+++++|+..||..- .
T Consensus 380 LnPr~tV~~~i~epL~~~~~~~~---------------------------------~~~~~rv~~ll~~VgL~~~----~ 422 (539)
T COG1123 380 LNPRMTVGDILAEPLRIHGGGSG---------------------------------AERRARVAELLELVGLPPE----F 422 (539)
T ss_pred cCccccHHHHHHhHHhhhcccch---------------------------------HHHHHHHHHHHHHcCCCHH----H
Confidence 78999999999887765443210 0122357889999999842 3
Q ss_pred cCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEE
Q 002833 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (875)
Q Consensus 336 g~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vi 415 (875)
.+.++..|||||||||+|||||+.+|++|++|||||.||++++.+++++|+++.++.|.|.++.. |+..-+..+||+|+
T Consensus 423 l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfIS-HDl~vV~~i~drv~ 501 (539)
T COG1123 423 LDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFIS-HDLAVVRYIADRVA 501 (539)
T ss_pred HhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEe-CCHHHHHhhCceEE
Confidence 34555679999999999999999999999999999999999999999999999999999998865 56678889999999
Q ss_pred EEeCCeEEEecChhhH
Q 002833 416 LLSEGQIVYQGPRDNV 431 (875)
Q Consensus 416 lL~~G~iv~~Gp~~~~ 431 (875)
||++|+||+.||.+++
T Consensus 502 vm~~G~iVE~G~~~~v 517 (539)
T COG1123 502 VMYDGRIVEEGPTEKV 517 (539)
T ss_pred EEECCeEEEeCCHHHH
Confidence 9999999999999988
No 250
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=7e-35 Score=311.97 Aligned_cols=212 Identities=21% Similarity=0.299 Sum_probs=167.3
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcC--cCCCCCCccEEEECCEeCCCCcc---Cc-eEEEEecCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK--LGKDLRASGKITYCGHELNEFVP---QR-TCAYISQHDLHH 257 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~--l~~~~~~sG~I~~nG~~~~~~~~---~~-~~~yv~Q~d~~~ 257 (875)
+.+|+|||++|+|||+++|+|||||||||||++|+|+ ++|. +|+|.++|.++....+ ++ .++|++|++.++
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~ 96 (252)
T CHL00131 20 NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKIL---EGDILFKGESILDLEPEERAHLGIFLAFQYPIEI 96 (252)
T ss_pred EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCC---CceEEECCEEcccCChhhhheeeEEEEecccccc
Confidence 4599999999999999999999999999999999998 4565 9999999998765432 12 478999999999
Q ss_pred CCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCC-cccccccc
Q 002833 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVG 336 (875)
Q Consensus 258 ~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg 336 (875)
+.+|+.+++.+........ ... ++.+.. +....++++++.+||. +..++.++
T Consensus 97 ~~~~~~~~l~~~~~~~~~~---------------~~~-~~~~~~-----------~~~~~~~~~l~~~~l~~~~~~~~~~ 149 (252)
T CHL00131 97 PGVSNADFLRLAYNSKRKF---------------QGL-PELDPL-----------EFLEIINEKLKLVGMDPSFLSRNVN 149 (252)
T ss_pred ccccHHHHHHHhhhhhhcc---------------ccc-ccccHH-----------HHHHHHHHHHHHcCCchhhhccccc
Confidence 9999999998754311000 000 000000 0112356688999997 35565554
Q ss_pred CccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhh-cCeEE
Q 002833 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL-FDDII 415 (875)
Q Consensus 337 ~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~l-fD~vi 415 (875)
. .|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++++ .+.|+|++.|++. .+..+ +|+++
T Consensus 150 ~----~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~~tH~~~-~~~~~~~d~i~ 223 (252)
T CHL00131 150 E----GFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMT-SENSIILITHYQR-LLDYIKPDYVH 223 (252)
T ss_pred c----CCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHH-HHHhhhCCEEE
Confidence 1 4999999999999999999999999999999999999999999999875 4889999887754 45555 89999
Q ss_pred EEeCCeEEEecChhhH
Q 002833 416 LLSEGQIVYQGPRDNV 431 (875)
Q Consensus 416 lL~~G~iv~~Gp~~~~ 431 (875)
+|++|++++.|+++.+
T Consensus 224 ~l~~G~i~~~~~~~~~ 239 (252)
T CHL00131 224 VMQNGKIIKTGDAELA 239 (252)
T ss_pred EEeCCEEEEecChhhh
Confidence 9999999999998843
No 251
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.9e-35 Score=308.91 Aligned_cols=205 Identities=24% Similarity=0.349 Sum_probs=159.4
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (875)
+.+|+|+|+.|++|++++|+|||||||||||++|+|+++|. +|+|.++|.++..... ++.++|++|+..+++ .
T Consensus 14 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 89 (236)
T cd03253 14 RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVS---SGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFN-D 89 (236)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCEEEECCEEhhhCCHHHHHhhEEEECCCChhhc-c
Confidence 45999999999999999999999999999999999999886 9999999998754321 356999999987775 6
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHh--CCCccccccccCc
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL--GLDICADTMVGDE 338 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l--gL~~~~dt~vg~~ 338 (875)
||+||+.+..... . .. . .+. ... .......++.+ |++...+..
T Consensus 90 tv~~nl~~~~~~~-~--~~----~---------------~~~---~~~------~~~l~~~~~~l~~~~~~~~~~~---- 134 (236)
T cd03253 90 TIGYNIRYGRPDA-T--DE----E---------------VIE---AAK------AAQIHDKIMRFPDGYDTIVGER---- 134 (236)
T ss_pred hHHHHHhhcCCCC-C--HH----H---------------HHH---HHH------HcCcHHHHHhccccccchhhcC----
Confidence 9999998753210 0 00 0 000 000 00112233333 444333333
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEe
Q 002833 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (875)
Q Consensus 339 ~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~ 418 (875)
.+.|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++.+ +.|+|++.|++. ++ ..||++++|+
T Consensus 135 -~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sh~~~-~~-~~~d~~~~l~ 209 (236)
T cd03253 135 -GLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK--GRTTIVIAHRLS-TI-VNADKIIVLK 209 (236)
T ss_pred -CCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC--CCEEEEEcCCHH-HH-HhCCEEEEEE
Confidence 456999999999999999999999999999999999999999999999864 789998887765 45 4599999999
Q ss_pred CCeEEEecChhhHH
Q 002833 419 EGQIVYQGPRDNVL 432 (875)
Q Consensus 419 ~G~iv~~Gp~~~~~ 432 (875)
+|++++.|+.+++.
T Consensus 210 ~g~i~~~~~~~~~~ 223 (236)
T cd03253 210 DGRIVERGTHEELL 223 (236)
T ss_pred CCEEEeeCCHHHHh
Confidence 99999999877653
No 252
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=4e-35 Score=345.98 Aligned_cols=209 Identities=22% Similarity=0.271 Sum_probs=170.6
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC--CCCccEEEECCEeCCCCcc-------CceEEEEecCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEFVP-------QRTCAYISQHD 254 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~--~~~sG~I~~nG~~~~~~~~-------~~~~~yv~Q~d 254 (875)
+.+|+|+|+.|++||+++|+|||||||||||++|+|.++|. ...+|+|.++|+++..... ++.++|++|+.
T Consensus 22 ~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~ 101 (529)
T PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP 101 (529)
T ss_pred eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCc
Confidence 46999999999999999999999999999999999999862 1138999999998754321 24699999986
Q ss_pred C--CCCCCCHHHHHHHhhhhc-CCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCc--
Q 002833 255 L--HHGEMTVRETLDFSGRCL-GVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI-- 329 (875)
Q Consensus 255 ~--~~~~lTV~EtL~f~a~~~-~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-- 329 (875)
. +++.+||.|++.+..... +.. +. +....++++++.+||.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gl~~~~ 147 (529)
T PRK15134 102 MVSLNPLHTLEKQLYEVLSLHRGMR----------RE------------------------AARGEILNCLDRVGIRQAA 147 (529)
T ss_pred hhhcCchhhHHHHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHCCCCChH
Confidence 4 567789999987643211 110 00 01224577899999976
Q ss_pred -cccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHH
Q 002833 330 -CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETY 408 (875)
Q Consensus 330 -~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~ 408 (875)
..+..++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|+++|++ ..+.
T Consensus 148 ~~~~~~~~-----~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~ 221 (529)
T PRK15134 148 KRLTDYPH-----QLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNL-SIVR 221 (529)
T ss_pred HHHhhCCc-----ccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcH-HHHH
Confidence 3466665 49999999999999999999999999999999999999999999999875588988887664 4677
Q ss_pred hhcCeEEEEeCCeEEEecChhhHH
Q 002833 409 DLFDDIILLSEGQIVYQGPRDNVL 432 (875)
Q Consensus 409 ~lfD~vilL~~G~iv~~Gp~~~~~ 432 (875)
++||+|++|++|++++.|+++++.
T Consensus 222 ~~~dri~~l~~G~i~~~g~~~~~~ 245 (529)
T PRK15134 222 KLADRVAVMQNGRCVEQNRAATLF 245 (529)
T ss_pred HhcCEEEEEECCEEEEeCCHHHHh
Confidence 899999999999999999988763
No 253
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-35 Score=342.14 Aligned_cols=207 Identities=22% Similarity=0.309 Sum_probs=173.1
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc----CceEEEEecCCCCCC
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHG 258 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~ 258 (875)
++++|+|||+.+++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++|++|+..+++
T Consensus 10 ~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 86 (491)
T PRK10982 10 GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEALENGISMVHQELNLVL 86 (491)
T ss_pred CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEeccccccc
Confidence 356999999999999999999999999999999999999986 9999999998754321 356999999998899
Q ss_pred CCCHHHHHHHhhh-hcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccC
Q 002833 259 EMTVRETLDFSGR-CLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (875)
Q Consensus 259 ~lTV~EtL~f~a~-~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (875)
.+||+||+.++.. ..+... ... +....++++++.+||.+..++.+++
T Consensus 87 ~~tv~~~l~~~~~~~~~~~~--------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~ 134 (491)
T PRK10982 87 QRSVMDNMWLGRYPTKGMFV--------DQD------------------------KMYRDTKAIFDELDIDIDPRAKVAT 134 (491)
T ss_pred CCCHHHHhhccccccccccc--------CHH------------------------HHHHHHHHHHHHcCCCCCccCchhh
Confidence 9999999987532 111000 000 0012356788999998888877764
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEE
Q 002833 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (875)
Q Consensus 338 ~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL 417 (875)
|||||||||+||++|+.+|++|+|||||+|||+.+..++.+.|+++++ .+.|+|++.|++ +++.++||+|++|
T Consensus 135 -----LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvii~tH~~-~~~~~~~d~i~~l 207 (491)
T PRK10982 135 -----LSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE-RGCGIVYISHKM-EEIFQLCDEITIL 207 (491)
T ss_pred -----CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCH-HHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999975 488888887654 5788899999999
Q ss_pred eCCeEEEecChhhH
Q 002833 418 SEGQIVYQGPRDNV 431 (875)
Q Consensus 418 ~~G~iv~~Gp~~~~ 431 (875)
++|+++..|+++++
T Consensus 208 ~~G~i~~~~~~~~~ 221 (491)
T PRK10982 208 RDGQWIATQPLAGL 221 (491)
T ss_pred ECCEEEeecChhhC
Confidence 99999999987664
No 254
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-35 Score=352.91 Aligned_cols=205 Identities=21% Similarity=0.262 Sum_probs=170.2
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCC----------Cc-------cCce
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE----------FV-------PQRT 246 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~----------~~-------~~~~ 246 (875)
.++|+|||+.|++||+++|+|||||||||||++|+|+++|+ +|+|.++|..+.. .. .++.
T Consensus 29 ~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 105 (623)
T PRK10261 29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA---GGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGAD 105 (623)
T ss_pred eeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CeEEEECCEEeccccccccccccCCHHHHHHHhCCC
Confidence 46999999999999999999999999999999999999986 9999999974411 00 1246
Q ss_pred EEEEecCC--CCCCCCCHHHHHHHhhhhc-CCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHH
Q 002833 247 CAYISQHD--LHHGEMTVRETLDFSGRCL-GVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK 323 (875)
Q Consensus 247 ~~yv~Q~d--~~~~~lTV~EtL~f~a~~~-~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~ 323 (875)
++||+|++ .+++.+||.||+.++.+.+ +.. +. +....++++|+
T Consensus 106 ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~~l~ 151 (623)
T PRK10261 106 MAMIFQEPMTSLNPVFTVGEQIAESIRLHQGAS----------RE------------------------EAMVEAKRMLD 151 (623)
T ss_pred EEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHH
Confidence 99999997 6788999999999876532 110 00 01224567899
Q ss_pred HhCCCc---cccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEee
Q 002833 324 ILGLDI---CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVAL 400 (875)
Q Consensus 324 ~lgL~~---~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi 400 (875)
.+||.+ ..+..+. .|||||||||+||+||+.+|++|||||||+|||+.++.++.+.|+++++..|+|+|++.
T Consensus 152 ~~gL~~~~~~~~~~~~-----~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~it 226 (623)
T PRK10261 152 QVRIPEAQTILSRYPH-----QLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFIT 226 (623)
T ss_pred HCCCCChhhHHhCCCc-----cCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEc
Confidence 999963 3555554 59999999999999999999999999999999999999999999999876688888876
Q ss_pred cCCchhHHhhcCeEEEEeCCeEEEecChhhH
Q 002833 401 LQPAPETYDLFDDIILLSEGQIVYQGPRDNV 431 (875)
Q Consensus 401 ~q~~~ei~~lfD~vilL~~G~iv~~Gp~~~~ 431 (875)
|+ ..++.++||+|++|++|++++.|+++++
T Consensus 227 Hd-l~~~~~~adri~vl~~G~i~~~g~~~~~ 256 (623)
T PRK10261 227 HD-MGVVAEIADRVLVMYQGEAVETGSVEQI 256 (623)
T ss_pred CC-HHHHHHhCCEEEEeeCCeecccCCHHHh
Confidence 54 5578899999999999999999998876
No 255
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=6.5e-35 Score=305.06 Aligned_cols=189 Identities=24% Similarity=0.281 Sum_probs=160.8
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHH
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (875)
+++|+++|+.|++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.....++.++|++|++.+++.+|+.
T Consensus 24 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~ 100 (214)
T PRK13543 24 EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVE---SGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTL 100 (214)
T ss_pred ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CeeEEECCEEccchhhhhceEEeecCcccccCCcHH
Confidence 46999999999999999999999999999999999999986 999999999876433345699999999899999999
Q ss_pred HHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCC
Q 002833 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (875)
Q Consensus 264 EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (875)
||+.+.....+.. ....++.+++.+||.+..++.+++ |
T Consensus 101 e~l~~~~~~~~~~-------------------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----L 138 (214)
T PRK13543 101 ENLHFLCGLHGRR-------------------------------------AKQMPGSALAIVGLAGYEDTLVRQ-----L 138 (214)
T ss_pred HHHHHHHHhcCCc-------------------------------------HHHHHHHHHHHcCChhhccCChhh-----C
Confidence 9998764321100 011245678889998878877764 9
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeC
Q 002833 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (875)
Q Consensus 344 SGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~ 419 (875)
||||||||+||++++.+|++++|||||+|||+.+...+.+.|+++.+ .+.|+|++.|++ .++.+++|++++|+.
T Consensus 139 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 139 SAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLR-GGGAALVTTHGA-YAAPPVRTRMLTLEA 212 (214)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCh-hhhhhhcceEEEEee
Confidence 99999999999999999999999999999999999999999999876 478888877665 478899999999864
No 256
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=1.7e-34 Score=344.02 Aligned_cols=207 Identities=25% Similarity=0.393 Sum_probs=168.3
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (875)
+.+|+|+|++++|||.++|+||||||||||+|+|+|.++|. +|+|.+||.++++..+ ++.++|++|++.+|+ .
T Consensus 353 ~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~-~ 428 (576)
T TIGR02204 353 QPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ---SGRILLDGVDLRQLDPAELRARMALVPQDPVLFA-A 428 (576)
T ss_pred CccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHHhceEEccCCcccc-c
Confidence 46999999999999999999999999999999999999996 9999999999876544 467999999887775 5
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccC
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (875)
|++|||.++.. +.+.+++.+++...+ ..+.++ .+++..||.+|+. .
T Consensus 429 Ti~~Ni~~~~~-------------------------~~~~~~~~~~l~~~~------l~~~i~--~l~~gl~t~i~~~-g 474 (576)
T TIGR02204 429 SVMENIRYGRP-------------------------DATDEEVEAAARAAH------AHEFIS--ALPEGYDTYLGER-G 474 (576)
T ss_pred cHHHHHhcCCC-------------------------CCCHHHHHHHHHHcC------cHHHHH--hCCCCCCceeCCC-C
Confidence 99999987521 111112222222111 112222 2455678888864 5
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCC
Q 002833 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (875)
Q Consensus 341 rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G 420 (875)
+.||||||||+++||+++.+|++|+|||||++||+.++..+.+.|+++.+ ++|+|++.|++ +....+|+|++|++|
T Consensus 475 ~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~--~~t~IiitH~~--~~~~~~d~vi~l~~g 550 (576)
T TIGR02204 475 VTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMK--GRTTLIIAHRL--ATVLKADRIVVMDQG 550 (576)
T ss_pred CcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhC--CCEEEEEecch--HHHHhCCEEEEEECC
Confidence 66999999999999999999999999999999999999999999999853 78999988887 456789999999999
Q ss_pred eEEEecChhhHH
Q 002833 421 QIVYQGPRDNVL 432 (875)
Q Consensus 421 ~iv~~Gp~~~~~ 432 (875)
+++..|++++..
T Consensus 551 ~~~~~g~~~~l~ 562 (576)
T TIGR02204 551 RIVAQGTHAELI 562 (576)
T ss_pred EEEeeecHHHHH
Confidence 999999988764
No 257
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-34 Score=310.23 Aligned_cols=210 Identities=21% Similarity=0.305 Sum_probs=165.4
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC--CCCCCccEEEECCEeCCCC-----ccCceEEEEecCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~--~~~~~sG~I~~nG~~~~~~-----~~~~~~~yv~Q~d~~ 256 (875)
+.+|+|+|++|++||+++|+|||||||||||++|+|+.+ |....+|+|.++|+++... ..++.++|++|++.+
T Consensus 16 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 95 (250)
T PRK14266 16 AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNP 95 (250)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCcc
Confidence 459999999999999999999999999999999999864 2111389999999987531 124679999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCcccccccc
Q 002833 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (875)
Q Consensus 257 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (875)
++. ||.||+.+.....+...+ . .....+.++++.+||........
T Consensus 96 ~~~-t~~~nl~~~~~~~~~~~~---------~------------------------~~~~~~~~~l~~~~l~~~l~~~~- 140 (250)
T PRK14266 96 FPK-SIFDNVAYGLRIHGEDDE---------D------------------------FIEERVEESLKAAALWDEVKDKL- 140 (250)
T ss_pred Ccc-hHHHHHHhHHhhcCCCCH---------H------------------------HHHHHHHHHHHHcCCchhHHHHH-
Confidence 875 999999876432211000 0 00123456677777743211111
Q ss_pred CccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEE
Q 002833 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (875)
Q Consensus 337 ~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vil 416 (875)
+...+.|||||||||+||++|+.+|++|+|||||+|||..+...+.+.|+++++ +.|+|++.|++ .++.+.+|++++
T Consensus 141 ~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tiii~sh~~-~~~~~~~~~i~~ 217 (250)
T PRK14266 141 DKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE--DYTIVIVTHNM-QQATRVSKYTSF 217 (250)
T ss_pred hCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEECCH-HHHHhhcCEEEE
Confidence 233456999999999999999999999999999999999999999999999953 67888887765 478889999999
Q ss_pred EeCCeEEEecChhhH
Q 002833 417 LSEGQIVYQGPRDNV 431 (875)
Q Consensus 417 L~~G~iv~~Gp~~~~ 431 (875)
|++|+++++|+++++
T Consensus 218 l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 218 FLNGEIIESGLTDQI 232 (250)
T ss_pred EECCeEEEeCCHHHH
Confidence 999999999998876
No 258
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=5.1e-35 Score=342.91 Aligned_cols=209 Identities=25% Similarity=0.290 Sum_probs=170.2
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc----CceEEEEecCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (875)
+++|+|||+.+++|++++|+|||||||||||++|+|.++|. ..+|+|.++|+++..... ++.++|++|++.+++.
T Consensus 14 ~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (500)
T TIGR02633 14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHG-TWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPE 92 (500)
T ss_pred eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCC
Confidence 56999999999999999999999999999999999998761 128999999998765322 3569999999989999
Q ss_pred CCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccc-cccccCc
Q 002833 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICA-DTMVGDE 338 (875)
Q Consensus 260 lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~-dt~vg~~ 338 (875)
+||.||+.++......+.. .... +....++++++.+||.+.. +..++
T Consensus 93 ~tv~~~l~~~~~~~~~~~~------~~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-- 140 (500)
T TIGR02633 93 LSVAENIFLGNEITLPGGR------MAYN------------------------AMYLRAKNLLRELQLDADNVTRPVG-- 140 (500)
T ss_pred CcHHHHHHhhccccccccc------cCHH------------------------HHHHHHHHHHHHcCCCCCcccCchh--
Confidence 9999999886432100000 0000 0112356789999998754 45555
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEe
Q 002833 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (875)
Q Consensus 339 ~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~ 418 (875)
.|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++++ .|.|+|++.|+ ..++.++||+|++|+
T Consensus 141 ---~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviiitHd-~~~~~~~~d~i~~l~ 215 (500)
T TIGR02633 141 ---DYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA-HGVACVYISHK-LNEVKAVCDTICVIR 215 (500)
T ss_pred ---hCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCc-HHHHHHhCCEEEEEe
Confidence 4999999999999999999999999999999999999999999999975 58888887665 457888999999999
Q ss_pred CCeEEEecChhh
Q 002833 419 EGQIVYQGPRDN 430 (875)
Q Consensus 419 ~G~iv~~Gp~~~ 430 (875)
+|++++.|++++
T Consensus 216 ~G~i~~~~~~~~ 227 (500)
T TIGR02633 216 DGQHVATKDMST 227 (500)
T ss_pred CCeEeeecCccc
Confidence 999999988764
No 259
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=6.8e-35 Score=323.46 Aligned_cols=188 Identities=30% Similarity=0.393 Sum_probs=161.0
Q ss_pred EEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc-CceEEEEecCCCCCCCCCHHHHHHHhhhhcCCcchhH
Q 002833 202 LLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYE 280 (875)
Q Consensus 202 llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~ 280 (875)
|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++|++|+..+++++||+||+.|+.+.++..
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~---- 73 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPD---SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVP---- 73 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCC----
Confidence 68999999999999999999986 9999999998865433 467999999999999999999999975432211
Q ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCCCHHHHHHHHHHHHHhcC
Q 002833 281 LLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGT 360 (875)
Q Consensus 281 ~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~ 360 (875)
+.+ ....++++++.+||.+..++.+. .|||||||||+||++|+.+
T Consensus 74 ------~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qRvalaraL~~~ 118 (325)
T TIGR01187 74 ------RAE------------------------IKPRVLEALRLVQLEEFADRKPH-----QLSGGQQQRVALARALVFK 118 (325)
T ss_pred ------HHH------------------------HHHHHHHHHHHcCCcchhcCChh-----hCCHHHHHHHHHHHHHHhC
Confidence 000 11235678999999988887765 4999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCeEEEecChhhHH
Q 002833 361 ANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVL 432 (875)
Q Consensus 361 p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~iv~~Gp~~~~~ 432 (875)
|++|+|||||+|||+.++.++.+.|+++.+..+.|+|+++|++ .++.++||+|++|++|+++..|+++++.
T Consensus 119 p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~-~e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 119 PKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQ-EEAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999876688999987765 5788999999999999999999998874
No 260
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=6.6e-35 Score=343.53 Aligned_cols=219 Identities=22% Similarity=0.286 Sum_probs=175.7
Q ss_pred HhhhccccCCcc----cccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEEC-CEe---CCCC
Q 002833 170 ALGLLHLVPSKK----RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYC-GHE---LNEF 241 (875)
Q Consensus 170 ~l~~~~~~~~~~----~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~n-G~~---~~~~ 241 (875)
++++.++...+. +.+.+|+|+|+.|++||+++|+|||||||||||++|+|.++|+ +|+|.++ |.+ +...
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~~g~~~~~~~~~ 355 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPT---SGEVNVRVGDEWVDMTKP 355 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEEecCCcccccccc
Confidence 355555554442 2356999999999999999999999999999999999999886 9999996 642 2211
Q ss_pred c------cCceEEEEecCCCCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhh
Q 002833 242 V------PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETS 315 (875)
Q Consensus 242 ~------~~~~~~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (875)
. .++.++|++|++.+++.+||.||+.+...+ ... +.+ ..
T Consensus 356 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~-~~~----------~~~------------------------~~ 400 (520)
T TIGR03269 356 GPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGL-ELP----------DEL------------------------AR 400 (520)
T ss_pred chhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHc-CCC----------HHH------------------------HH
Confidence 1 134689999998889999999999875322 100 000 01
Q ss_pred hHHHHHHHHhCCCc-----cccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 002833 316 LVTDYVLKILGLDI-----CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVH 390 (875)
Q Consensus 316 ~~~~~iL~~lgL~~-----~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~ 390 (875)
..++.+++.+||.+ ..++.++ .|||||||||+||+||+.+|++|+|||||+|||+.+...+.+.|+++++
T Consensus 401 ~~~~~~l~~~~l~~~~~~~~~~~~~~-----~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~ 475 (520)
T TIGR03269 401 MKAVITLKMVGFDEEKAEEILDKYPD-----ELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKARE 475 (520)
T ss_pred HHHHHHHHhCCCCCccchhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 23566889999975 3566665 4999999999999999999999999999999999999999999999987
Q ss_pred hCCcEEEEeecCCchhHHhhcCeEEEEeCCeEEEecChhhHH
Q 002833 391 ILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVL 432 (875)
Q Consensus 391 ~~~~tviisi~q~~~ei~~lfD~vilL~~G~iv~~Gp~~~~~ 432 (875)
..+.|+|++.|++ .++.++||++++|++|+++..|+++++.
T Consensus 476 ~~g~tvi~vsHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 516 (520)
T TIGR03269 476 EMEQTFIIVSHDM-DFVLDVCDRAALMRDGKIVKIGDPEEIV 516 (520)
T ss_pred HcCcEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 6688888887665 5788999999999999999999988764
No 261
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=6.4e-35 Score=343.64 Aligned_cols=208 Identities=25% Similarity=0.319 Sum_probs=170.6
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc--CCCCCCccEEEECC-----------------------EeC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL--GKDLRASGKITYCG-----------------------HEL 238 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l--~~~~~~sG~I~~nG-----------------------~~~ 238 (875)
+.+|+|+|+.+.+|++++|+|||||||||||++|+|.+ +|+ +|+|.++| .++
T Consensus 13 ~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~---~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~ 89 (520)
T TIGR03269 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPT---SGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTL 89 (520)
T ss_pred eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCC---ceEEEEeccccccccccccccccccccccccccc
Confidence 56999999999999999999999999999999999996 575 89999972 221
Q ss_pred C-------CC------ccCceEEEEecC-CCCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHH
Q 002833 239 N-------EF------VPQRTCAYISQH-DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304 (875)
Q Consensus 239 ~-------~~------~~~~~~~yv~Q~-d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~ 304 (875)
. .. ..++.++|++|+ +.+++.+||+|++.|.....+.. ..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~----------~~---------------- 143 (520)
T TIGR03269 90 EPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYE----------GK---------------- 143 (520)
T ss_pred cccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCC----------HH----------------
Confidence 0 00 013568999997 67888999999999865432210 00
Q ss_pred HHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHH
Q 002833 305 KAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKF 384 (875)
Q Consensus 305 ~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~ 384 (875)
+....++++++.+||++..+..+++ |||||||||+||++|+.+|++|||||||+|||+.++..+.+.
T Consensus 144 --------~~~~~~~~~l~~~gl~~~~~~~~~~-----LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 210 (520)
T TIGR03269 144 --------EAVGRAVDLIEMVQLSHRITHIARD-----LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNA 210 (520)
T ss_pred --------HHHHHHHHHHHHcCChhhhhcCccc-----CCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHH
Confidence 0112456789999998887777654 999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCeEEEecChhhHHHH
Q 002833 385 LKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEF 434 (875)
Q Consensus 385 L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~iv~~Gp~~~~~~~ 434 (875)
|+++++..+.|+|++.|++ ..+.++||+|++|++|++++.|+++++.+.
T Consensus 211 l~~l~~~~g~tviivtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 259 (520)
T TIGR03269 211 LEEAVKASGISMVLTSHWP-EVIEDLSDKAIWLENGEIKEEGTPDEVVAV 259 (520)
T ss_pred HHHHHHhcCcEEEEEeCCH-HHHHHhcCEEEEEeCCEEeeecCHHHHHHH
Confidence 9999775688988887665 467789999999999999999998877543
No 262
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=1.5e-34 Score=308.63 Aligned_cols=220 Identities=22% Similarity=0.274 Sum_probs=168.7
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc--CCCCCCccEEEECCEeCCCCcc----CceEEEEecCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL--GKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHH 257 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l--~~~~~~sG~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~ 257 (875)
+++|+|+|+.|++|++++|+|||||||||||++|+|++ +|+ +|+|.++|.++....+ ++.++|++|++.++
T Consensus 14 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~ 90 (248)
T PRK09580 14 KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVT---GGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEI 90 (248)
T ss_pred eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCC---ceEEEECCCccccCCHHHHhhcceEEEecCchhc
Confidence 46999999999999999999999999999999999995 465 9999999988754332 24589999999888
Q ss_pred CCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCC-cccccccc
Q 002833 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVG 336 (875)
Q Consensus 258 ~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg 336 (875)
+.+|+.+++.+..... .+ .. .....+ ..+....++.+++.++|. +..++.+.
T Consensus 91 ~~~~~~~~~~~~~~~~------------~~-~~-----~~~~~~---------~~~~~~~~~~~l~~~~l~~~~~~~~~~ 143 (248)
T PRK09580 91 PGVSNQFFLQTALNAV------------RS-YR-----GQEPLD---------RFDFQDLMEEKIALLKMPEDLLTRSVN 143 (248)
T ss_pred cchhHHHHHHHhhhhh------------hc-cc-----ccccch---------HHHHHHHHHHHHHHcCCChhhcccCCC
Confidence 8888877765432100 00 00 000000 000122456788899995 44555442
Q ss_pred CccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhh-cCeEE
Q 002833 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL-FDDII 415 (875)
Q Consensus 337 ~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~l-fD~vi 415 (875)
+.|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++++ .++|+|++.|++. .+... +|+++
T Consensus 144 ----~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tiii~sH~~~-~~~~~~~d~i~ 217 (248)
T PRK09580 144 ----VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRD-GKRSFIIVTHYQR-ILDYIKPDYVH 217 (248)
T ss_pred ----CCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-HHHhhhCCEEE
Confidence 25999999999999999999999999999999999999999999999875 4789999888754 45555 89999
Q ss_pred EEeCCeEEEecChhhHHHHHHHcCC
Q 002833 416 LLSEGQIVYQGPRDNVLEFFEHMGF 440 (875)
Q Consensus 416 lL~~G~iv~~Gp~~~~~~~F~~~Gf 440 (875)
+|++|++++.|+.+.+ +.++..++
T Consensus 218 ~l~~g~i~~~g~~~~~-~~~~~~~~ 241 (248)
T PRK09580 218 VLYQGRIVKSGDFTLV-KQLEEQGY 241 (248)
T ss_pred EEECCeEEEeCCHHHH-HHHHhcCC
Confidence 9999999999998855 44454444
No 263
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=6.1e-34 Score=306.91 Aligned_cols=198 Identities=19% Similarity=0.241 Sum_probs=165.7
Q ss_pred cccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCC
Q 002833 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261 (875)
Q Consensus 182 ~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lT 261 (875)
..+.+|+|+|++|+||++++|+|||||||||||++|+|.++|+ +|+|.++|+ ++++.|+..+.+.+|
T Consensus 35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~---~G~I~~~g~----------~~~~~~~~~~~~~~t 101 (264)
T PRK13546 35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPT---VGKVDRNGE----------VSVIAISAGLSGQLT 101 (264)
T ss_pred CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCE----------EeEEecccCCCCCCc
Confidence 4567999999999999999999999999999999999999986 999999985 356677777778899
Q ss_pred HHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCC
Q 002833 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (875)
Q Consensus 262 V~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (875)
|.||+.+.....+... +. ....++.+++.++|.+..+..++
T Consensus 102 v~enl~~~~~~~~~~~-----------------------~~-----------~~~~~~~~l~~~~l~~~~~~~~~----- 142 (264)
T PRK13546 102 GIENIEFKMLCMGFKR-----------------------KE-----------IKAMTPKIIEFSELGEFIYQPVK----- 142 (264)
T ss_pred HHHHHHHHHHHcCCCH-----------------------HH-----------HHHHHHHHHHHcCCchhhcCCcc-----
Confidence 9999987543322100 00 01124567788899887777665
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCe
Q 002833 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (875)
Q Consensus 342 gLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~ 421 (875)
.|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++++ .+.|+|++.|++ .++.+++|+|++|++|+
T Consensus 143 ~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~-~g~tiIiisH~~-~~i~~~~d~i~~l~~G~ 220 (264)
T PRK13546 143 KYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKE-QNKTIFFVSHNL-GQVRQFCTKIAWIEGGK 220 (264)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCH-HHHHHHcCEEEEEECCE
Confidence 4999999999999999999999999999999999999999999999865 588998887764 47778999999999999
Q ss_pred EEEecChhhHHH
Q 002833 422 IVYQGPRDNVLE 433 (875)
Q Consensus 422 iv~~Gp~~~~~~ 433 (875)
+++.|+.+++.+
T Consensus 221 i~~~g~~~~~~~ 232 (264)
T PRK13546 221 LKDYGELDDVLP 232 (264)
T ss_pred EEEeCCHHHHHH
Confidence 999999887754
No 264
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=8.3e-35 Score=311.59 Aligned_cols=189 Identities=26% Similarity=0.367 Sum_probs=159.2
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCC--C
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEM--T 261 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~l--T 261 (875)
+.+|+|+|+.|++||+++|+|||||||||||++|+|+++|+ +|+|.++| +..++|++|+..+++.+ |
T Consensus 17 ~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~~--------~~~i~~v~q~~~~~~~l~~~ 85 (251)
T PRK09544 17 RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPD---EGVIKRNG--------KLRIGYVPQKLYLDTTLPLT 85 (251)
T ss_pred ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECC--------ccCEEEeccccccccccChh
Confidence 46999999999999999999999999999999999999986 99999987 23599999998777654 7
Q ss_pred HHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCC
Q 002833 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (875)
Q Consensus 262 V~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (875)
+.+++.+... . ....+.++++.+||.+..++.+.
T Consensus 86 ~~~~~~~~~~---~--------------------------------------~~~~~~~~l~~~gl~~~~~~~~~----- 119 (251)
T PRK09544 86 VNRFLRLRPG---T--------------------------------------KKEDILPALKRVQAGHLIDAPMQ----- 119 (251)
T ss_pred HHHHHhcccc---c--------------------------------------cHHHHHHHHHHcCChHHHhCChh-----
Confidence 7776643210 0 00123557889999888777665
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCe
Q 002833 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (875)
Q Consensus 342 gLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~ 421 (875)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.++||+|++|+ |+
T Consensus 120 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~-~~i~~~~d~i~~l~-~~ 197 (251)
T PRK09544 120 KLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDL-HLVMAKTDEVLCLN-HH 197 (251)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEC-Cc
Confidence 49999999999999999999999999999999999999999999999765578888887665 47788999999996 57
Q ss_pred EEEecChhhH
Q 002833 422 IVYQGPRDNV 431 (875)
Q Consensus 422 iv~~Gp~~~~ 431 (875)
+++.|+++++
T Consensus 198 i~~~g~~~~~ 207 (251)
T PRK09544 198 ICCSGTPEVV 207 (251)
T ss_pred eEeeCCHHHH
Confidence 9999998776
No 265
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=7.2e-35 Score=302.43 Aligned_cols=187 Identities=23% Similarity=0.260 Sum_probs=156.9
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc--cCceEEEEecCCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEMT 261 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lT 261 (875)
+++|+|||+.|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 14 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~t 90 (204)
T PRK13538 14 RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPD---AGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELT 90 (204)
T ss_pred EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEcccchHHhhhheEEeCCccccCcCCc
Confidence 46999999999999999999999999999999999999986 999999999875322 2457899999998999999
Q ss_pred HHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCC
Q 002833 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (875)
Q Consensus 262 V~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (875)
|.||+.+.....+. +....++.+++.+||.+..|+.++
T Consensus 91 v~e~l~~~~~~~~~-------------------------------------~~~~~~~~~l~~~gl~~~~~~~~~----- 128 (204)
T PRK13538 91 ALENLRFYQRLHGP-------------------------------------GDDEALWEALAQVGLAGFEDVPVR----- 128 (204)
T ss_pred HHHHHHHHHHhcCc-------------------------------------cHHHHHHHHHHHcCCHHHhhCChh-----
Confidence 99999886432210 001235678899999887777765
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEE
Q 002833 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (875)
Q Consensus 342 gLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL 417 (875)
.|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++++ .+.|+|++.|++. ++-.+-++++++
T Consensus 129 ~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~-~i~~~~~~~~~~ 202 (204)
T PRK13538 129 QLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAE-QGGMVILTTHQDL-PVASDKVRKLRL 202 (204)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEecChh-hhccCCceEEec
Confidence 4999999999999999999999999999999999999999999999875 4789998887754 555566677666
No 266
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=6.3e-35 Score=315.99 Aligned_cols=199 Identities=25% Similarity=0.273 Sum_probs=161.8
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (875)
..+|+|||+.|++||+++|+|||||||||||++|+|+++ . +|+|.++|.++..... ++.++|++|++.+++ .
T Consensus 17 ~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~---~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~-~ 91 (275)
T cd03289 17 NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFS-G 91 (275)
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C---CcEEEECCEEhhhCCHHHHhhhEEEECCCcccch-h
Confidence 359999999999999999999999999999999999986 4 8999999998865432 467999999998887 4
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCc-------cccc
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI-------CADT 333 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-------~~dt 333 (875)
||+||+...... . .+ .+.+.++.+||.+ ..++
T Consensus 92 tv~~nl~~~~~~----~----------------------~~---------------~~~~~l~~~gL~~~~~~~p~~l~~ 130 (275)
T cd03289 92 TFRKNLDPYGKW----S----------------------DE---------------EIWKVAEEVGLKSVIEQFPGQLDF 130 (275)
T ss_pred hHHHHhhhccCC----C----------------------HH---------------HHHHHHHHcCCHHHHHhCcccccc
Confidence 999999632110 0 00 0122344455543 3445
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCe
Q 002833 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (875)
Q Consensus 334 ~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~ 413 (875)
.+++ ....|||||||||++||||+.+|++|+|||||+|||+.+...+.+.|+++. .++|+|++.|++ ..+ ..||+
T Consensus 131 ~~~~-~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~--~~~tii~isH~~-~~i-~~~dr 205 (275)
T cd03289 131 VLVD-GGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF--ADCTVILSEHRI-EAM-LECQR 205 (275)
T ss_pred eecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc--CCCEEEEEECCH-HHH-HhCCE
Confidence 5544 456799999999999999999999999999999999999999999999874 378998888776 445 45999
Q ss_pred EEEEeCCeEEEecChhhHHH
Q 002833 414 IILLSEGQIVYQGPRDNVLE 433 (875)
Q Consensus 414 vilL~~G~iv~~Gp~~~~~~ 433 (875)
|++|++|++++.|+++++..
T Consensus 206 i~vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 206 FLVIEENKVRQYDSIQKLLN 225 (275)
T ss_pred EEEecCCeEeecCCHHHHhh
Confidence 99999999999999998864
No 267
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=1.2e-34 Score=300.09 Aligned_cols=184 Identities=21% Similarity=0.228 Sum_probs=157.6
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc--cCceEEEEecCCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEMT 261 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lT 261 (875)
+.+|+|+|++|++||+++|+|+|||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (201)
T cd03231 13 RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL---AGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLS 89 (201)
T ss_pred ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccccHHhhhheEEeccccccCCCcC
Confidence 46999999999999999999999999999999999999986 999999998864321 2467999999988889999
Q ss_pred HHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCC
Q 002833 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (875)
Q Consensus 262 V~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (875)
|+||+.+..... ....++.+++.+||.+..++.+.
T Consensus 90 v~e~l~~~~~~~----------------------------------------~~~~~~~~l~~~~l~~~~~~~~~----- 124 (201)
T cd03231 90 VLENLRFWHADH----------------------------------------SDEQVEEALARVGLNGFEDRPVA----- 124 (201)
T ss_pred HHHHHHhhcccc----------------------------------------cHHHHHHHHHHcCChhhhcCchh-----
Confidence 999998752110 01124668889999887777765
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEE
Q 002833 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (875)
Q Consensus 342 gLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL 417 (875)
.||||||||++||++|+.+|++++|||||+|||+.+..++.+.|+++.+ .+.|+|++.|++. +..+.+|+++++
T Consensus 125 ~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 125 QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCA-RGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCch-hhhhccceeEec
Confidence 4999999999999999999999999999999999999999999999875 4789999887765 566789999887
No 268
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=1.1e-34 Score=297.63 Aligned_cols=179 Identities=25% Similarity=0.318 Sum_probs=147.2
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCC-----ccCceEEEEecCCC-C
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-----VPQRTCAYISQHDL-H 256 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~-----~~~~~~~yv~Q~d~-~ 256 (875)
++.+|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.++|++|++. .
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 80 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ---SGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQ 80 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceeEEECCEEccccccchHHHHhhEEEEecChhhc
Confidence 356999999999999999999999999999999999999986 99999999987421 11356899999963 3
Q ss_pred CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCcccccccc
Q 002833 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (875)
Q Consensus 257 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (875)
+..+||+||+.+.....+.. .. +....++++++.+||.+..++.++
T Consensus 81 ~~~~tv~~nl~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~ 126 (190)
T TIGR01166 81 LFAADVDQDVAFGPLNLGLS----------EA------------------------EVERRVREALTAVGASGLRERPTH 126 (190)
T ss_pred cccccHHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCchhhhhCChh
Confidence 44579999998864322110 00 001235678899999887787765
Q ss_pred CccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCc
Q 002833 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPA 404 (875)
Q Consensus 337 ~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~ 404 (875)
+ |||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.|++.
T Consensus 127 ~-----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tili~sH~~~ 188 (190)
T TIGR01166 127 C-----LSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRA-EGMTVVISTHDVD 188 (190)
T ss_pred h-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeeccc
Confidence 4 999999999999999999999999999999999999999999999976 4889999888753
No 269
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-34 Score=340.23 Aligned_cols=203 Identities=27% Similarity=0.314 Sum_probs=168.7
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc----cCceEEEEecCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV----PQRTCAYISQHDLHHGE 259 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~----~~~~~~yv~Q~d~~~~~ 259 (875)
+++|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++|++|++.+++.
T Consensus 17 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (501)
T PRK11288 17 VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD---AGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPE 93 (501)
T ss_pred EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHhCCEEEEEechhccCC
Confidence 46999999999999999999999999999999999999886 999999999875322 14579999999989999
Q ss_pred CCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCcc
Q 002833 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (875)
Q Consensus 260 lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (875)
+||.||+.++......+. .... +....++++++.+||.+..+..++
T Consensus 94 ~tv~~~l~~~~~~~~~~~-------~~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~--- 139 (501)
T PRK11288 94 MTVAENLYLGQLPHKGGI-------VNRR------------------------LLNYEAREQLEHLGVDIDPDTPLK--- 139 (501)
T ss_pred CCHHHHHHhcccccccCC-------CCHH------------------------HHHHHHHHHHHHcCCCCCcCCchh---
Confidence 999999998632110000 0000 011235678999999877777666
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeC
Q 002833 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (875)
Q Consensus 340 ~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~ 419 (875)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|.|+|++.|++ .++.++||+|++|++
T Consensus 140 --~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiiiitHd~-~~~~~~~d~i~~l~~ 215 (501)
T PRK11288 140 --YLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA-EGRVILYVSHRM-EEIFALCDAITVFKD 215 (501)
T ss_pred --hCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHhCCEEEEEEC
Confidence 4999999999999999999999999999999999999999999999976 488988887665 477889999999999
Q ss_pred CeEEEecC
Q 002833 420 GQIVYQGP 427 (875)
Q Consensus 420 G~iv~~Gp 427 (875)
|+++..++
T Consensus 216 G~i~~~~~ 223 (501)
T PRK11288 216 GRYVATFD 223 (501)
T ss_pred CEEEeecC
Confidence 99987664
No 270
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-34 Score=339.89 Aligned_cols=221 Identities=20% Similarity=0.301 Sum_probs=177.0
Q ss_pred HhhhccccCCcc--cccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC-CCCCCccEEEECCEeCCCCcc---
Q 002833 170 ALGLLHLVPSKK--RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG-KDLRASGKITYCGHELNEFVP--- 243 (875)
Q Consensus 170 ~l~~~~~~~~~~--~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~-~~~~~sG~I~~nG~~~~~~~~--- 243 (875)
++++.++...+. +++.+|+|||++|++||+++|+||||||||||||+|+|.++ |+ +|+|.++|+++.....
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~---~G~i~~~g~~~~~~~~~~~ 335 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRW---EGEIFIDGKPVKIRNPQQA 335 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCC---CcEEEECCEECCCCCHHHH
Confidence 355556655442 23569999999999999999999999999999999999998 45 9999999998753221
Q ss_pred -CceEEEEecCC---CCCCCCCHHHHHHHhhh--hcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhH
Q 002833 244 -QRTCAYISQHD---LHHGEMTVRETLDFSGR--CLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLV 317 (875)
Q Consensus 244 -~~~~~yv~Q~d---~~~~~lTV~EtL~f~a~--~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (875)
++.++|++|+. .+++.+||.||+.+... ....+. ..+. +....
T Consensus 336 ~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~-------~~~~------------------------~~~~~ 384 (506)
T PRK13549 336 IAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSR-------IDDA------------------------AELKT 384 (506)
T ss_pred HHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcc-------cChH------------------------HHHHH
Confidence 34689999985 47889999999987532 100000 0000 01123
Q ss_pred HHHHHHHhCCC-ccccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q 002833 318 TDYVLKILGLD-ICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTM 396 (875)
Q Consensus 318 ~~~iL~~lgL~-~~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tv 396 (875)
++.+++.+||. +..|..+++ |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|.|+
T Consensus 385 ~~~~l~~~~l~~~~~~~~~~~-----LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tv 458 (506)
T PRK13549 385 ILESIQRLKVKTASPELAIAR-----LSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQ-QGVAI 458 (506)
T ss_pred HHHHHHhcCccCCCccccccc-----CCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHH-CCCEE
Confidence 57789999996 577877765 999999999999999999999999999999999999999999999986 48898
Q ss_pred EEeecCCchhHHhhcCeEEEEeCCeEEEecChhhH
Q 002833 397 IVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNV 431 (875)
Q Consensus 397 iisi~q~~~ei~~lfD~vilL~~G~iv~~Gp~~~~ 431 (875)
|++.|+. .++.++||++++|++|+++..|+++++
T Consensus 459 i~~sHd~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 459 IVISSEL-PEVLGLSDRVLVMHEGKLKGDLINHNL 492 (506)
T ss_pred EEECCCH-HHHHHhCCEEEEEECCEEEEEeccccC
Confidence 8887654 578899999999999999999987654
No 271
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-34 Score=311.17 Aligned_cols=206 Identities=20% Similarity=0.286 Sum_probs=162.6
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCC--CCccEEEECCEeCCC----C---ccCceEEEEecCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL--RASGKITYCGHELNE----F---VPQRTCAYISQHD 254 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~--~~sG~I~~nG~~~~~----~---~~~~~~~yv~Q~d 254 (875)
+++|+|+|+.|++||+++|+|+|||||||||++|+|..+|.. ..+|+|.++|.++.. . ..++.++|++|++
T Consensus 29 ~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~ 108 (265)
T PRK14252 29 YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKP 108 (265)
T ss_pred eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCC
Confidence 369999999999999999999999999999999999987521 148999999987531 1 1245689999998
Q ss_pred CCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCC----cc
Q 002833 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----IC 330 (875)
Q Consensus 255 ~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~----~~ 330 (875)
.+++. ||+||+.++....+...+ +. .+..++.+++.+++. +.
T Consensus 109 ~~~~~-tv~eni~~~~~~~~~~~~----------~~-----------------------~~~~~~~~l~~~~l~~~l~~~ 154 (265)
T PRK14252 109 NPFPK-SIFENVAYGLRIRGVKRR----------SI-----------------------LEERVENALRNAALWDEVKDR 154 (265)
T ss_pred cCCcc-hHHHHHHhHHHHcCCChH----------HH-----------------------HHHHHHHHHHHcCCchhhhHH
Confidence 88886 999999886432221100 00 011234455666653 22
Q ss_pred ccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhh
Q 002833 331 ADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL 410 (875)
Q Consensus 331 ~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~l 410 (875)
.+.. ...|||||||||+||++|+.+|++++|||||+|||..+...+.+.|+++++ +.|+|++.|+ .+++.++
T Consensus 155 ~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~--~~tiiivth~-~~~~~~~ 226 (265)
T PRK14252 155 LGDL-----AFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN--KVTILIVTHN-MQQAARV 226 (265)
T ss_pred HhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEecC-HHHHHHh
Confidence 3333 345999999999999999999999999999999999999999999999975 5788887665 4578889
Q ss_pred cCeEEEEeCCeEEEecChhhH
Q 002833 411 FDDIILLSEGQIVYQGPRDNV 431 (875)
Q Consensus 411 fD~vilL~~G~iv~~Gp~~~~ 431 (875)
||++++|++|+++..|+.+++
T Consensus 227 ~d~i~~l~~G~i~~~g~~~~~ 247 (265)
T PRK14252 227 SDYTAYMYMGELIEFGATDTI 247 (265)
T ss_pred CCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999998776
No 272
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-34 Score=339.89 Aligned_cols=220 Identities=19% Similarity=0.323 Sum_probs=173.5
Q ss_pred hhhccccCCcccccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc----Cce
Q 002833 171 LGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRT 246 (875)
Q Consensus 171 l~~~~~~~~~~~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~ 246 (875)
+.+.++...+ ..+|+|+|+.|++|++++|+||||||||||||+|+|.++|+ +|+|.++|+++..... ++.
T Consensus 266 l~~~~l~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~ 339 (510)
T PRK09700 266 FEVRNVTSRD---RKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRA---GGEIRLNGKDISPRSPLDAVKKG 339 (510)
T ss_pred EEEeCccccC---CCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---CCeEEECCEECCCCCHHHHHHCC
Confidence 4455554332 24899999999999999999999999999999999999986 9999999998754221 356
Q ss_pred EEEEecC---CCCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHH
Q 002833 247 CAYISQH---DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK 323 (875)
Q Consensus 247 ~~yv~Q~---d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~ 323 (875)
++|++|+ ..+++.+||.||+.+....+..+... . .+..... +....++++|+
T Consensus 340 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~-~----------~~~~~~~--------------~~~~~~~~~l~ 394 (510)
T PRK09700 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKG-A----------MGLFHEV--------------DEQRTAENQRE 394 (510)
T ss_pred cEEccCccccCCCcCCCcHHHHhccccccccccccc-c----------ccccChH--------------HHHHHHHHHHH
Confidence 8999998 46788999999998763221000000 0 0000000 00123567899
Q ss_pred HhCCC-ccccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecC
Q 002833 324 ILGLD-ICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQ 402 (875)
Q Consensus 324 ~lgL~-~~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q 402 (875)
.+||. +..++.+++ |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|.|+|++.|+
T Consensus 395 ~~~l~~~~~~~~~~~-----LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvi~vsHd 468 (510)
T PRK09700 395 LLALKCHSVNQNITE-----LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLAD-DGKVILMVSSE 468 (510)
T ss_pred hcCCCCCCccCcccc-----CChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHH-CCCEEEEEcCC
Confidence 99997 778888775 999999999999999999999999999999999999999999999986 48898888766
Q ss_pred CchhHHhhcCeEEEEeCCeEEEecCh
Q 002833 403 PAPETYDLFDDIILLSEGQIVYQGPR 428 (875)
Q Consensus 403 ~~~ei~~lfD~vilL~~G~iv~~Gp~ 428 (875)
+ .++.++||++++|++|+++..++.
T Consensus 469 ~-~~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 469 L-PEIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred H-HHHHhhCCEEEEEECCEEEEEecC
Confidence 4 578899999999999999998866
No 273
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-34 Score=327.46 Aligned_cols=197 Identities=18% Similarity=0.211 Sum_probs=163.6
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHH
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (875)
+.+|+|+|+.|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.+. ++.+...+.+.+||+
T Consensus 37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~---sGeI~I~G~~~----------~i~~~~~l~~~lTV~ 103 (549)
T PRK13545 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPN---KGTVDIKGSAA----------LIAISSGLNGQLTGI 103 (549)
T ss_pred ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---ceEEEECCEee----------eEEeccccCCCCcHH
Confidence 46999999999999999999999999999999999999986 99999999752 122334556778999
Q ss_pred HHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCC
Q 002833 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (875)
Q Consensus 264 EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (875)
|++.+.....+.. ..+ ....++.+++.+||.+..+..++ .|
T Consensus 104 EnL~l~~~~~~~~----------~~e------------------------~~e~i~elLe~lgL~~~ld~~~~-----~L 144 (549)
T PRK13545 104 ENIELKGLMMGLT----------KEK------------------------IKEIIPEIIEFADIGKFIYQPVK-----TY 144 (549)
T ss_pred HHHHhhhhhcCCC----------HHH------------------------HHHHHHHHHHHcCChhHhhCCcc-----cC
Confidence 9998754322210 000 01134668889999888887765 49
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCeEE
Q 002833 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIV 423 (875)
Q Consensus 344 SGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~iv 423 (875)
||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.++||++++|++|+++
T Consensus 145 SGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~-~G~TIIIVSHdl-~~i~~l~DrIivL~~GkIv 222 (549)
T PRK13545 145 SSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKE-QGKTIFFISHSL-SQVKSFCTKALWLHYGQVK 222 (549)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEECCH-HHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999865 488998887765 4788899999999999999
Q ss_pred EecChhhHHHH
Q 002833 424 YQGPRDNVLEF 434 (875)
Q Consensus 424 ~~Gp~~~~~~~ 434 (875)
+.|+++++..-
T Consensus 223 ~~G~~~el~~~ 233 (549)
T PRK13545 223 EYGDIKEVVDH 233 (549)
T ss_pred EECCHHHHHhh
Confidence 99999887643
No 274
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=1.9e-34 Score=298.44 Aligned_cols=180 Identities=23% Similarity=0.345 Sum_probs=152.8
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc--CCCCCCccEEEECCEeCCCCcc----CceEEEEecCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL--GKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHH 257 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l--~~~~~~sG~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~ 257 (875)
+.+|+|+|+.+++||+++|+|||||||||||++|+|.. +|+ +|+|.++|+++..... ++.++|++|+..++
T Consensus 13 ~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (200)
T cd03217 13 KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVT---EGEILFKGEDITDLPPEERARLGIFLAFQYPPEI 89 (200)
T ss_pred EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCC---ccEEEECCEECCcCCHHHHhhCcEEEeecChhhc
Confidence 46999999999999999999999999999999999994 565 9999999999865432 23599999998888
Q ss_pred CCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccC
Q 002833 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (875)
Q Consensus 258 ~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (875)
+.+|+++++.-
T Consensus 90 ~~~~~~~~l~~--------------------------------------------------------------------- 100 (200)
T cd03217 90 PGVKNADFLRY--------------------------------------------------------------------- 100 (200)
T ss_pred cCccHHHHHhh---------------------------------------------------------------------
Confidence 88887766510
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHh-hcCeEEE
Q 002833 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD-LFDDIIL 416 (875)
Q Consensus 338 ~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~-lfD~vil 416 (875)
..+.|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++++ .+.|+|++.|++. .+.+ ++|++++
T Consensus 101 -~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~-~~~tiii~sh~~~-~~~~~~~d~i~~ 177 (200)
T cd03217 101 -VNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLRE-EGKSVLIITHYQR-LLDYIKPDRVHV 177 (200)
T ss_pred -ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHH-HHHHhhCCEEEE
Confidence 0124999999999999999999999999999999999999999999999975 4789999888765 5666 7999999
Q ss_pred EeCCeEEEecChhhHHHHHHHcC
Q 002833 417 LSEGQIVYQGPRDNVLEFFEHMG 439 (875)
Q Consensus 417 L~~G~iv~~Gp~~~~~~~F~~~G 439 (875)
|++|+++..|+.+ +.++|.+.|
T Consensus 178 l~~G~i~~~~~~~-~~~~~~~~~ 199 (200)
T cd03217 178 LYDGRIVKSGDKE-LALEIEKKG 199 (200)
T ss_pred EECCEEEEEccHH-HHhhhcccc
Confidence 9999999999655 555665444
No 275
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1e-34 Score=304.51 Aligned_cols=199 Identities=24% Similarity=0.331 Sum_probs=153.0
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc---cCceEEEEecCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~l 260 (875)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++ .
T Consensus 17 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~ 92 (221)
T cd03244 17 PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELS---SGSILIDGVDISKIGLHDLRSRISIIPQDPVLFS-G 92 (221)
T ss_pred cccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CCEEEECCEEhHhCCHHHHhhhEEEECCCCcccc-c
Confidence 46999999999999999999999999999999999999886 999999999875432 2467999999988665 6
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHH--hCCCccccccccCc
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKI--LGLDICADTMVGDE 338 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~--lgL~~~~dt~vg~~ 338 (875)
||+||+.+.... ... +....++.. + ....++. .|+....+.
T Consensus 93 tv~enl~~~~~~----~~~-------------------~~~~~~~~~---~------l~~~~~~l~~~l~~~~~~----- 135 (221)
T cd03244 93 TIRSNLDPFGEY----SDE-------------------ELWQALERV---G------LKEFVESLPGGLDTVVEE----- 135 (221)
T ss_pred hHHHHhCcCCCC----CHH-------------------HHHHHHHHh---C------cHHHHHhccccccccccc-----
Confidence 999999653210 000 000000000 0 1111221 233333222
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEe
Q 002833 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (875)
Q Consensus 339 ~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~ 418 (875)
.++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ +.|+|++.|++. ++. .||++++|+
T Consensus 136 ~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~-~~~-~~d~i~~l~ 211 (221)
T cd03244 136 GGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK--DCTVLTIAHRLD-TII-DSDRILVLD 211 (221)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHH-HHh-hCCEEEEEE
Confidence 4457999999999999999999999999999999999999999999999853 578888877764 454 599999999
Q ss_pred CCeEEEecC
Q 002833 419 EGQIVYQGP 427 (875)
Q Consensus 419 ~G~iv~~Gp 427 (875)
+|+++++|+
T Consensus 212 ~g~~~~~~~ 220 (221)
T cd03244 212 KGRVVEFDS 220 (221)
T ss_pred CCeEEecCC
Confidence 999998876
No 276
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.2e-34 Score=295.47 Aligned_cols=161 Identities=26% Similarity=0.398 Sum_probs=144.1
Q ss_pred cccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc----CceEEEEecCC---CCCC
Q 002833 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHD---LHHG 258 (875)
Q Consensus 186 IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~~~yv~Q~d---~~~~ 258 (875)
+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|+++|+++....+ ++.++|++|+. .+++
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPA---SGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVL 91 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccCHHHHHhCCeEEecCCcccCcccC
Confidence 899999999999999999999999999999999999986 9999999998865432 45799999984 5788
Q ss_pred CCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCc
Q 002833 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (875)
Q Consensus 259 ~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~ 338 (875)
.+||+||+.+..
T Consensus 92 ~~t~~e~l~~~~-------------------------------------------------------------------- 103 (182)
T cd03215 92 DLSVAENIALSS-------------------------------------------------------------------- 103 (182)
T ss_pred CCcHHHHHHHHh--------------------------------------------------------------------
Confidence 899999986520
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEe
Q 002833 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (875)
Q Consensus 339 ~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~ 418 (875)
.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ .+.|+|++.|++ +++.++||++++|+
T Consensus 104 ---~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~-~~~~~~~d~v~~l~ 178 (182)
T cd03215 104 ---LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELAD-AGKAVLLISSEL-DELLGLCDRILVMY 178 (182)
T ss_pred ---hcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEec
Confidence 0999999999999999999999999999999999999999999999975 478998887765 47888999999999
Q ss_pred CCeE
Q 002833 419 EGQI 422 (875)
Q Consensus 419 ~G~i 422 (875)
+|++
T Consensus 179 ~G~i 182 (182)
T cd03215 179 EGRI 182 (182)
T ss_pred CCcC
Confidence 9974
No 277
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-34 Score=292.30 Aligned_cols=159 Identities=31% Similarity=0.488 Sum_probs=142.5
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCC--ccCceEEEEecCCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF--VPQRTCAYISQHDLHHGEMT 261 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~--~~~~~~~yv~Q~d~~~~~lT 261 (875)
.++|+|+|+++++||+++|+|||||||||||++|+|.++|. +|+|.++|+++... ..++.++|++|++.+++.+|
T Consensus 13 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (173)
T cd03230 13 KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLT 89 (173)
T ss_pred eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccchHhhhccEEEEecCCccccCCc
Confidence 35999999999999999999999999999999999999886 99999999987543 22467999999988888889
Q ss_pred HHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCC
Q 002833 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (875)
Q Consensus 262 V~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (875)
|.||+.
T Consensus 90 v~~~~~-------------------------------------------------------------------------- 95 (173)
T cd03230 90 VRENLK-------------------------------------------------------------------------- 95 (173)
T ss_pred HHHHhh--------------------------------------------------------------------------
Confidence 887650
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCe
Q 002833 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (875)
Q Consensus 342 gLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~ 421 (875)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++. +.|+|++.|++. ++.+++|++++|++|+
T Consensus 96 -LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiii~th~~~-~~~~~~d~i~~l~~g~ 172 (173)
T cd03230 96 -LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKE-GKTILLSSHILE-EAERLCDRVAILNNGR 172 (173)
T ss_pred -cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEECCCHH-HHHHhCCEEEEEeCCC
Confidence 8999999999999999999999999999999999999999999999875 788888877654 7778999999999997
Q ss_pred E
Q 002833 422 I 422 (875)
Q Consensus 422 i 422 (875)
+
T Consensus 173 i 173 (173)
T cd03230 173 I 173 (173)
T ss_pred C
Confidence 4
No 278
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=2e-34 Score=297.61 Aligned_cols=183 Identities=23% Similarity=0.316 Sum_probs=153.8
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc--cCceEEEEecCCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEMT 261 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lT 261 (875)
+.+|+|+|+.|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (198)
T TIGR01189 13 RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPD---SGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELS 89 (198)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEEcccchHHhhhheEEeccCcccccCCc
Confidence 56999999999999999999999999999999999999886 999999999875432 2357899999988888899
Q ss_pred HHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCC
Q 002833 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (875)
Q Consensus 262 V~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (875)
|.||+.+.....+. ....++++++.+||.+..++.+++
T Consensus 90 v~~~l~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~~~---- 127 (198)
T TIGR01189 90 ALENLHFWAAIHGG--------------------------------------AQRTIEDALAAVGLTGFEDLPAAQ---- 127 (198)
T ss_pred HHHHHHHHHHHcCC--------------------------------------cHHHHHHHHHHcCCHHHhcCChhh----
Confidence 99999875322110 011245678899998888877764
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEE
Q 002833 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (875)
Q Consensus 342 gLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vil 416 (875)
|||||||||+||++|+.+|++++|||||+|||..+...+.+.|+++++ .+.|+|++.|++.+. .+++++.
T Consensus 128 -LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sH~~~~~---~~~~~~~ 197 (198)
T TIGR01189 128 -LSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLA-RGGIVLLTTHQDLGL---VEARELR 197 (198)
T ss_pred -cCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEEcccccc---cceEEee
Confidence 999999999999999999999999999999999999999999999875 488999999987532 3566654
No 279
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=2.7e-34 Score=339.10 Aligned_cols=178 Identities=26% Similarity=0.396 Sum_probs=147.9
Q ss_pred ccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCCC
Q 002833 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEMT 261 (875)
Q Consensus 185 ~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 261 (875)
++|+|+|++|+|||.++|+||||||||||+|+|+|.++|+ +|+|.+||.++.+. . ++.++||+|++.+|+. |
T Consensus 349 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~---~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~-T 423 (529)
T TIGR02868 349 PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPL---QGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDT-T 423 (529)
T ss_pred ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhH-HHHHHhheEEEccCcccccc-c
Confidence 5999999999999999999999999999999999999997 99999999998876 4 4689999999888866 9
Q ss_pred HHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCC
Q 002833 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (875)
Q Consensus 262 V~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (875)
|+|||.++. |+.+.+++.+++...+.+ +. +-.|++..||.+|+. ..
T Consensus 424 I~eNI~~g~-------------------------~~~~~e~i~~al~~a~l~------~~--i~~lp~GldT~ige~-G~ 469 (529)
T TIGR02868 424 VRDNLRLGR-------------------------PDATDEELWAALERVGLA------DW--LRSLPDGLDTVLGEG-GA 469 (529)
T ss_pred HHHHHhccC-------------------------CCCCHHHHHHHHHHcCCH------HH--HHhCcccccchhccc-cC
Confidence 999998862 112223333343333221 11 224677889999974 45
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCC
Q 002833 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQP 403 (875)
Q Consensus 342 gLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~ 403 (875)
.||||||||++|||||+.+|++|+||||||+||+.++..|.+.|+++. .++|+|+..|++
T Consensus 470 ~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~--~~~TvIiItHrl 529 (529)
T TIGR02868 470 RLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL--SGKTVVVITHHL 529 (529)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEecCC
Confidence 699999999999999999999999999999999999999999999874 478999988864
No 280
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.9e-34 Score=300.10 Aligned_cols=186 Identities=25% Similarity=0.365 Sum_probs=155.6
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHH
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (875)
+.+|+|+|+.|++||+++|+||||||||||+++|+|.++|+ +|+|+++|.++.....++.++|++|++.+++.+||+
T Consensus 15 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~ 91 (207)
T PRK13539 15 RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPA---AGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVA 91 (207)
T ss_pred eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHH
Confidence 46999999999999999999999999999999999999886 999999998764211345789999998888999999
Q ss_pred HHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCC
Q 002833 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (875)
Q Consensus 264 EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (875)
||+.+..+..+. ....++++++.+||.+..+..+++ |
T Consensus 92 ~~l~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----L 128 (207)
T PRK13539 92 ENLEFWAAFLGG--------------------------------------EELDIAAALEAVGLAPLAHLPFGY-----L 128 (207)
T ss_pred HHHHHHHHhcCC--------------------------------------cHHHHHHHHHHcCCHHHHcCChhh-----c
Confidence 999875432110 001246688999998777777664 9
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeC
Q 002833 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (875)
Q Consensus 344 SGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~ 419 (875)
|||||||++||++|+.+|++++|||||+|||+.+..++.+.|+++++ .+.|+|++.|++. ++.+ |+++.+..
T Consensus 129 S~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~-~~~~--~~~~~~~~ 200 (207)
T PRK13539 129 SAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLA-QGGIVIAATHIPL-GLPG--ARELDLGP 200 (207)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCch-hhcc--CcEEeecC
Confidence 99999999999999999999999999999999999999999999876 4889999887764 4544 88887744
No 281
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=2.2e-34 Score=309.43 Aligned_cols=204 Identities=24% Similarity=0.308 Sum_probs=159.3
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (875)
+.+|+|+|+.|+|||+++|+|+|||||||||++|+|+++|. +|+|.++|+++..... ++.++|++|++.+++ .
T Consensus 34 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~-~ 109 (257)
T cd03288 34 KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIF---DGKIVIDGIDISKLPLHTLRSRLSIILQDPILFS-G 109 (257)
T ss_pred CcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCC---CCeEEECCEEhhhCCHHHHhhhEEEECCCCcccc-c
Confidence 45999999999999999999999999999999999999886 9999999998765322 467999999987776 5
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHh--CCCccccccccCc
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL--GLDICADTMVGDE 338 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l--gL~~~~dt~vg~~ 338 (875)
||+||+...... ... ... ++.. ....+..++.+ |++...+.
T Consensus 110 tv~~nl~~~~~~----~~~-------------------~~~---~~l~------~~~l~~~~~~~~~~l~~~~~~----- 152 (257)
T cd03288 110 SIRFNLDPECKC----TDD-------------------RLW---EALE------IAQLKNMVKSLPGGLDAVVTE----- 152 (257)
T ss_pred HHHHhcCcCCCC----CHH-------------------HHH---HHHH------HhCcHHHHhhcccccCcEecc-----
Confidence 999998542110 000 000 0000 00122344444 55443332
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEe
Q 002833 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (875)
Q Consensus 339 ~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~ 418 (875)
..+.||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++. .+.|+|++.|++. ++. .+|+|++|+
T Consensus 153 ~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~--~~~tiii~sh~~~-~~~-~~dri~~l~ 228 (257)
T cd03288 153 GGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF--ADRTVVTIAHRVS-TIL-DADLVLVLS 228 (257)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc--CCCEEEEEecChH-HHH-hCCEEEEEE
Confidence 345699999999999999999999999999999999999999999999874 3789998888775 444 499999999
Q ss_pred CCeEEEecChhhHH
Q 002833 419 EGQIVYQGPRDNVL 432 (875)
Q Consensus 419 ~G~iv~~Gp~~~~~ 432 (875)
+|+++..|+++++.
T Consensus 229 ~G~i~~~g~~~~~~ 242 (257)
T cd03288 229 RGILVECDTPENLL 242 (257)
T ss_pred CCEEEEeCCHHHHH
Confidence 99999999988764
No 282
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-34 Score=315.48 Aligned_cols=222 Identities=23% Similarity=0.336 Sum_probs=166.2
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC--CCCccEEEECCEeCCCCc-----cCceEEEEecCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEFV-----PQRTCAYISQHDLH 256 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~--~~~sG~I~~nG~~~~~~~-----~~~~~~yv~Q~d~~ 256 (875)
+.+|+++|+.|++||+++|+|||||||||||++|+|++++. ...+|+|.++|.++.... .++.++|++|+..+
T Consensus 58 ~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l 137 (305)
T PRK14264 58 DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNP 137 (305)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCcc
Confidence 35999999999999999999999999999999999998621 013999999999875321 13579999999887
Q ss_pred CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCcccccccc
Q 002833 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (875)
Q Consensus 257 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (875)
++ .||+||+.++.+.++.... .....+ .+. ... ......++.+++.++|.+..++..
T Consensus 138 ~~-~tv~enl~~~~~~~~~~~~-~~~~~~------~~~-~~~-------------~~~~~~~~~~l~~~~l~~~~~~~~- 194 (305)
T PRK14264 138 FP-KSIRENISYGPRKHGDINT-GLLARL------LGR-DDK-------------DAEDELVERSLRQAALWDEVNDRL- 194 (305)
T ss_pred cc-ccHHHHHHhHHhhcccccc-cccccc------ccc-Cch-------------HHHHHHHHHHHHHcCCchhhhHHh-
Confidence 77 5999999987542210000 000000 000 000 001223566788888854332222
Q ss_pred CccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeE-E
Q 002833 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI-I 415 (875)
Q Consensus 337 ~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~v-i 415 (875)
+..++.|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++++ +.|+|++.|++ ..+.++||++ +
T Consensus 195 ~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~--~~tiiivtH~~-~~i~~~~d~i~~ 271 (305)
T PRK14264 195 DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE--EYTVVVVTHNM-QQAARISDQTAV 271 (305)
T ss_pred cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCH-HHHHHhcCEEEE
Confidence 234567999999999999999999999999999999999999999999999975 47888887765 4677899997 5
Q ss_pred EEeCCeEEEecChhhH
Q 002833 416 LLSEGQIVYQGPRDNV 431 (875)
Q Consensus 416 lL~~G~iv~~Gp~~~~ 431 (875)
+|++|+++++|+++++
T Consensus 272 ~l~~G~i~~~g~~~~~ 287 (305)
T PRK14264 272 FLTGGELVEYDDTDKI 287 (305)
T ss_pred EecCCEEEEeCCHHHH
Confidence 7899999999998766
No 283
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=2.4e-34 Score=302.58 Aligned_cols=191 Identities=23% Similarity=0.277 Sum_probs=154.7
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEEC--CE--eCCCCcc-------CceEEEEec
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYC--GH--ELNEFVP-------QRTCAYISQ 252 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~n--G~--~~~~~~~-------~~~~~yv~Q 252 (875)
+.+|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++ |. ++..... ++.++|++|
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q 97 (224)
T TIGR02324 21 LPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPD---SGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQ 97 (224)
T ss_pred eEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEEecCCCccchhhcCHHHHHHHHhcceEEEec
Confidence 46999999999999999999999999999999999999986 9999998 42 4332211 246899999
Q ss_pred CCCCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCc-cc
Q 002833 253 HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI-CA 331 (875)
Q Consensus 253 ~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~~ 331 (875)
+..+++.+||+|++.+.....+... . +....+..+++.+||.+ ..
T Consensus 98 ~~~~~~~~tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~ 143 (224)
T TIGR02324 98 FLRVIPRVSALEVVAEPLLERGVPR----------E------------------------AARARARELLARLNIPERLW 143 (224)
T ss_pred ccccCCCccHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCchhhh
Confidence 9999999999999988643221100 0 00113456788999976 34
Q ss_pred cccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhc
Q 002833 332 DTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF 411 (875)
Q Consensus 332 dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lf 411 (875)
+..++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+ .+.|+|++.|+ ...+.++|
T Consensus 144 ~~~~~-----~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vsH~-~~~~~~~~ 216 (224)
T TIGR02324 144 HLPPA-----TFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKA-RGAALIGIFHD-EEVRELVA 216 (224)
T ss_pred hCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCC-HHHHHHhc
Confidence 55554 5999999999999999999999999999999999999999999999975 48899998877 44666799
Q ss_pred CeEEEEe
Q 002833 412 DDIILLS 418 (875)
Q Consensus 412 D~vilL~ 418 (875)
|+++.+.
T Consensus 217 d~i~~~~ 223 (224)
T TIGR02324 217 DRVMDVT 223 (224)
T ss_pred ceeEecC
Confidence 9998763
No 284
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=3.8e-34 Score=301.22 Aligned_cols=197 Identities=27% Similarity=0.387 Sum_probs=160.3
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCC--CCCCHHHHHHHh
Q 002833 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHH--GEMTVRETLDFS 269 (875)
Q Consensus 192 ~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~--~~lTV~EtL~f~ 269 (875)
+.|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++... ++.++|++|++..+ ..+||.||+.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~--~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPA---KGTVKVAGASPGKG--WRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCccchHh--hCcEEEecccccccCCCCccHHHHHHhc
Confidence 468999999999999999999999999999986 99999999876432 45799999997653 347999999875
Q ss_pred hhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCCCHHHHH
Q 002833 270 GRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKK 349 (875)
Q Consensus 270 a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGerk 349 (875)
.... .+. . . .+.. .....++++++.+||++..++.+++ |||||||
T Consensus 76 ~~~~-~~~----~----~-------~~~~--------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~q 120 (223)
T TIGR03771 76 RTGH-IGW----L----R-------RPCV--------------ADFAAVRDALRRVGLTELADRPVGE-----LSGGQRQ 120 (223)
T ss_pred cccc-ccc----c----c-------CCcH--------------HHHHHHHHHHHHhCCchhhcCChhh-----CCHHHHH
Confidence 3211 000 0 0 0000 0112356788999998877777664 9999999
Q ss_pred HHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCeEEEecChh
Q 002833 350 RVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRD 429 (875)
Q Consensus 350 RVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~iv~~Gp~~ 429 (875)
||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.|++. ++.++||+++++ +|++++.|+.+
T Consensus 121 rv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~-~~~tvii~sH~~~-~~~~~~d~i~~l-~G~i~~~~~~~ 197 (223)
T TIGR03771 121 RVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAG-AGTAILMTTHDLA-QAMATCDRVVLL-NGRVIADGTPQ 197 (223)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHH
Confidence 99999999999999999999999999999999999999875 4889999887654 688999999999 89999999987
Q ss_pred hH
Q 002833 430 NV 431 (875)
Q Consensus 430 ~~ 431 (875)
++
T Consensus 198 ~~ 199 (223)
T TIGR03771 198 QL 199 (223)
T ss_pred Hh
Confidence 65
No 285
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-34 Score=291.48 Aligned_cols=161 Identities=31% Similarity=0.479 Sum_probs=143.4
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc-----cCceEEEEecCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-----PQRTCAYISQHDLHHG 258 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~-----~~~~~~yv~Q~d~~~~ 258 (875)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++..++
T Consensus 13 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (178)
T cd03229 13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPD---SGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFP 89 (178)
T ss_pred eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccchhHHHHhhcEEEEecCCccCC
Confidence 46999999999999999999999999999999999999886 999999999876532 2467999999988888
Q ss_pred CCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCc
Q 002833 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (875)
Q Consensus 259 ~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~ 338 (875)
.+|++||+.+
T Consensus 90 ~~t~~~~l~~---------------------------------------------------------------------- 99 (178)
T cd03229 90 HLTVLENIAL---------------------------------------------------------------------- 99 (178)
T ss_pred CCCHHHheee----------------------------------------------------------------------
Confidence 8999888632
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEe
Q 002833 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (875)
Q Consensus 339 ~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~ 418 (875)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|++++.|++ .++.+++|++++|+
T Consensus 100 ---~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~ 175 (178)
T cd03229 100 ---GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDL-DEAARLADRVVVLR 175 (178)
T ss_pred ---cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEe
Confidence 09999999999999999999999999999999999999999999999875478888887765 46777999999999
Q ss_pred CCe
Q 002833 419 EGQ 421 (875)
Q Consensus 419 ~G~ 421 (875)
+|+
T Consensus 176 ~g~ 178 (178)
T cd03229 176 DGK 178 (178)
T ss_pred CCC
Confidence 985
No 286
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.1e-33 Score=366.75 Aligned_cols=207 Identities=23% Similarity=0.291 Sum_probs=172.5
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (875)
.++|+|||++|+|||.+||+|++|||||||+++|.|+++|+ +|+|.+||.++.+... ++.++||+|++.+|..
T Consensus 1252 ~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~---~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~G- 1327 (1622)
T PLN03130 1252 PPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELE---RGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSG- 1327 (1622)
T ss_pred CceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCEecccCCHHHHHhccEEECCCCccccc-
Confidence 35999999999999999999999999999999999999997 9999999999987653 5789999999998875
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccC
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (875)
||||||++... .+.+++++++...+.+ +.+ -.|+...||.||+ ..
T Consensus 1328 TIreNLd~~~~--------------------------~tdeei~~Al~~a~l~------~~I--~~lp~GLdt~Vge-~G 1372 (1622)
T PLN03130 1328 TVRFNLDPFNE--------------------------HNDADLWESLERAHLK------DVI--RRNSLGLDAEVSE-AG 1372 (1622)
T ss_pred cHHHHhCcCCC--------------------------CCHHHHHHHHHHcCcH------HHH--HhCccccCccccC-CC
Confidence 99999976421 1122334444333221 122 2456778999986 34
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCC
Q 002833 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (875)
Q Consensus 341 rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G 420 (875)
..||||||||++|||||+.+|+||+|||||++||+.|...|.+.|++.. .++|+|++.|... +...||+|++|++|
T Consensus 1373 ~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~--~~~TvI~IAHRL~--tI~~~DrIlVLd~G 1448 (1622)
T PLN03130 1373 ENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLN--TIIDCDRILVLDAG 1448 (1622)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEeCChH--HHHhCCEEEEEECC
Confidence 5699999999999999999999999999999999999999999999975 3789988887764 56679999999999
Q ss_pred eEEEecChhhHHH
Q 002833 421 QIVYQGPRDNVLE 433 (875)
Q Consensus 421 ~iv~~Gp~~~~~~ 433 (875)
+|+++|+++++++
T Consensus 1449 ~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1449 RVVEFDTPENLLS 1461 (1622)
T ss_pred EEEEeCCHHHHHh
Confidence 9999999999863
No 287
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=7.3e-34 Score=297.05 Aligned_cols=195 Identities=18% Similarity=0.211 Sum_probs=158.0
Q ss_pred ccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEE-ECCEeCCCCccCceEEEEecCCCCCCCCCHH
Q 002833 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKIT-YCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (875)
Q Consensus 185 ~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~-~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (875)
.+|+|||+.|++|++++|+||||||||||||+|+|.++|+ +|+|. ++|... .+.++..+++.+||+
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~---sG~i~~~~~~~~----------~~~~~~~l~~~ltv~ 67 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPD---EGDFIGLRGDAL----------PLGANSFILPGLTGE 67 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CCCEEEecCcee----------ccccccccCCcCcHH
Confidence 3799999999999999999999999999999999999886 99997 777532 123456678899999
Q ss_pred HHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCC
Q 002833 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (875)
Q Consensus 264 EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (875)
||+.+.+...+... . ...+.+++.++|+...|+.+++ +
T Consensus 68 enl~~~~~~~~~~~----------~---------------------------~~~~~~~~~~~l~~~~~~~~~~-----l 105 (213)
T PRK15177 68 ENARMMASLYGLDG----------D---------------------------EFSHFCYQLTQLEQCYTDRVSE-----Y 105 (213)
T ss_pred HHHHHHHHHcCCCH----------H---------------------------HHHHHHHHHhChhHHhhchHhh-----c
Confidence 99998655432110 0 0012234567788777877765 9
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCeEE
Q 002833 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIV 423 (875)
Q Consensus 344 SGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~iv 423 (875)
|||||||+++|++|+.+|++++|||||++||+.++..+.+.|.+..+ +.++|++.|.+ .++.++||++++|++|+++
T Consensus 106 S~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~--~~~ii~vsH~~-~~~~~~~d~i~~l~~G~i~ 182 (213)
T PRK15177 106 SVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ--QKGLIVLTHNP-RLIKEHCHAFGVLLHGKIT 182 (213)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh--CCcEEEEECCH-HHHHHhcCeeEEEECCeEE
Confidence 99999999999999999999999999999999999999998866543 35677766554 4777899999999999999
Q ss_pred EecChhhHHHHHHH
Q 002833 424 YQGPRDNVLEFFEH 437 (875)
Q Consensus 424 ~~Gp~~~~~~~F~~ 437 (875)
+.|+.++..++++.
T Consensus 183 ~~~~~~~~~~~~~~ 196 (213)
T PRK15177 183 MCEDLAQATALFEQ 196 (213)
T ss_pred EeCCHHHHHHHHHH
Confidence 99999998877653
No 288
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-34 Score=281.77 Aligned_cols=221 Identities=26% Similarity=0.362 Sum_probs=181.5
Q ss_pred cccccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCC-------Ccc---------
Q 002833 180 KKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE-------FVP--------- 243 (875)
Q Consensus 180 ~~~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~-------~~~--------- 243 (875)
+.+...+|++||+..+.|+.+.|+|.|||||||+|+||.=+..|. .|.|.+||..+.- ..+
T Consensus 15 ~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~---~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~ 91 (256)
T COG4598 15 RYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---AGSIRVNGEEIRLKRDKDGQLKPADKRQLQRL 91 (256)
T ss_pred hcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCC---CceEEECCeEEEeeeCCCCCeeeCCHHHHHHH
Confidence 345678999999999999999999999999999999999888887 9999999987631 111
Q ss_pred CceEEEEecCCCCCCCCCHHHHHHHhhh-hcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHH
Q 002833 244 QRTCAYISQHDLHHGEMTVRETLDFSGR-CLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 322 (875)
Q Consensus 244 ~~~~~yv~Q~d~~~~~lTV~EtL~f~a~-~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL 322 (875)
+...++|+|+.++.++|||.||+.-+.. ..|. ++. +...+.+..|
T Consensus 92 Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~----------~k~------------------------ea~e~Ae~~L 137 (256)
T COG4598 92 RTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGV----------SKA------------------------EAIERAEKYL 137 (256)
T ss_pred HHHhhHhhhhcchhHHHHHHHHHHhcchHhhcC----------CHH------------------------HHHHHHHHHH
Confidence 1246999999999999999999865421 1111 111 1223457789
Q ss_pred HHhCCCccccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecC
Q 002833 323 KILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQ 402 (875)
Q Consensus 323 ~~lgL~~~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q 402 (875)
...||.+.+|..+.. |||||+||++|||||+.+|+++++|||||.|||.-.-++++.++++++ .|+|+++.+|.
T Consensus 138 ~kVGi~ek~~~YP~~-----LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAe-EgrTMv~VTHE 211 (256)
T COG4598 138 AKVGIAEKADAYPAH-----LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAE-EGRTMVVVTHE 211 (256)
T ss_pred HHhCchhhhhcCccc-----cCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHH-hCCeEEEEeee
Confidence 999999998877664 999999999999999999999999999999999999999999999997 49999998764
Q ss_pred CchhHHhhcCeEEEEeCCeEEEecChhhHHHHHHHcCCCCCCCCCHHHHH
Q 002833 403 PAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452 (875)
Q Consensus 403 ~~~ei~~lfD~vilL~~G~iv~~Gp~~~~~~~F~~~Gf~~p~~~~~adfl 452 (875)
..-.-+...+|+.|++|.|-++||++++ |..|...-...|+
T Consensus 212 -M~FAR~Vss~v~fLh~G~iEE~G~P~qv--------f~nP~S~RlkqFl 252 (256)
T COG4598 212 -MGFARDVSSHVIFLHQGKIEEEGPPEQV--------FGNPQSPRLKQFL 252 (256)
T ss_pred -hhHHHhhhhheEEeecceecccCChHHH--------hcCCCCHHHHHHH
Confidence 4456678999999999999999999988 4556554444444
No 289
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=2.4e-34 Score=336.43 Aligned_cols=197 Identities=20% Similarity=0.237 Sum_probs=164.6
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCC--C-
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLH--H- 257 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~--~- 257 (875)
+.+|+|+|++|++|++++|+||||||||||||+|+|.++|+ +|+|.++|.++..... ++.++|++|++.. +
T Consensus 16 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~---~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 92 (490)
T PRK10938 16 TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLL---SGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLS 92 (490)
T ss_pred eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CceEEECCcccccCCHHHHHHHhceeccCcchhhcc
Confidence 45999999999999999999999999999999999999986 9999999977643221 2458999997542 1
Q ss_pred -----CCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCcccc
Q 002833 258 -----GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICAD 332 (875)
Q Consensus 258 -----~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~d 332 (875)
..+||+|++.+... ....++.+++.+||++..+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~l~~~~l~~~~~ 130 (490)
T PRK10938 93 PGEDDTGRTTAEIIQDEVK------------------------------------------DPARCEQLAQQFGITALLD 130 (490)
T ss_pred cchhhccccHHHhcccchh------------------------------------------HHHHHHHHHHHcCCHhhhh
Confidence 14677777643100 0123566889999998888
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcC
Q 002833 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (875)
Q Consensus 333 t~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD 412 (875)
..+++ |||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|+++++ .|.|+|++.|++ .++.++||
T Consensus 131 ~~~~~-----LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tvii~tH~~-~~~~~~~d 203 (490)
T PRK10938 131 RRFKY-----LSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQ-SGITLVLVLNRF-DEIPDFVQ 203 (490)
T ss_pred CCccc-----CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCCH-HHHHhhCC
Confidence 87765 999999999999999999999999999999999999999999999976 488988887664 57889999
Q ss_pred eEEEEeCCeEEEecChhhHH
Q 002833 413 DIILLSEGQIVYQGPRDNVL 432 (875)
Q Consensus 413 ~vilL~~G~iv~~Gp~~~~~ 432 (875)
+|++|++|+++.+|+++++.
T Consensus 204 ~v~~l~~G~i~~~~~~~~~~ 223 (490)
T PRK10938 204 FAGVLADCTLAETGEREEIL 223 (490)
T ss_pred EEEEEECCEEEEeCCHHHHh
Confidence 99999999999999987753
No 290
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3e-34 Score=275.84 Aligned_cols=206 Identities=26% Similarity=0.347 Sum_probs=171.5
Q ss_pred cccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCC--CCc-------cCceEEEEec
Q 002833 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN--EFV-------PQRTCAYISQ 252 (875)
Q Consensus 182 ~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~--~~~-------~~~~~~yv~Q 252 (875)
+..++|.||++..+.||.+.++||||+||||||+.|.=+.-|. +|+..+.|...+ ... .++.+|+|+|
T Consensus 13 g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~---sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfq 89 (242)
T COG4161 13 GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQ 89 (242)
T ss_pred ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCC---CCeEEecccccccccCccHHHHHHHHHhhhhhhh
Confidence 4567999999999999999999999999999999998776675 999999886543 111 1467999999
Q ss_pred CCCCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCcccc
Q 002833 253 HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICAD 332 (875)
Q Consensus 253 ~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~d 332 (875)
+-.+.|+|||.|||.-+. |+-.+ +++ .+......++|+.|.|.+.+|
T Consensus 90 qy~lwphltv~enlieap-~kv~g--------l~~------------------------~qa~~~a~ellkrlrl~~~ad 136 (242)
T COG4161 90 QYNLWPHLTVQENLIEAP-CRVLG--------LSK------------------------DQALARAEKLLKRLRLKPYAD 136 (242)
T ss_pred hhccCchhHHHHHHHhhh-HHHhC--------CCH------------------------HHHHHHHHHHHHHhccccccc
Confidence 999999999999996542 22111 111 122334677999999999999
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcC
Q 002833 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (875)
Q Consensus 333 t~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD 412 (875)
..+-. |||||+|||+|||||+..|++|++||||+.||+.-+.++++.+++++. .|.|-++..|.- .-.-+.+.
T Consensus 137 r~plh-----lsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~-tgitqvivthev-~va~k~as 209 (242)
T COG4161 137 RYPLH-----LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAE-TGITQVIVTHEV-EVARKTAS 209 (242)
T ss_pred cCcee-----cccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHh-cCceEEEEEeeh-hHHHhhhh
Confidence 87654 999999999999999999999999999999999999999999999986 699988887653 45667899
Q ss_pred eEEEEeCCeEEEecChhh
Q 002833 413 DIILLSEGQIVYQGPRDN 430 (875)
Q Consensus 413 ~vilL~~G~iv~~Gp~~~ 430 (875)
+|+.|.+|+||++|..+.
T Consensus 210 ~vvyme~g~ive~g~a~~ 227 (242)
T COG4161 210 RVVYMENGHIVEQGDASC 227 (242)
T ss_pred heEeeecCeeEeecchhh
Confidence 999999999999998753
No 291
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=1.6e-34 Score=304.18 Aligned_cols=195 Identities=22% Similarity=0.377 Sum_probs=156.0
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc---cCceEEEEecCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~l 260 (875)
..+|+|+|+.|++|++++|+||||||||||+++|+|.++|. +|+|.++|+++.... .++.++|++|+..+++ .
T Consensus 27 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~ 102 (226)
T cd03248 27 TLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ---GGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFA-R 102 (226)
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CcEEEECCCchHHcCHHHHHhhEEEEecccHHHh-h
Confidence 35999999999999999999999999999999999999886 999999998765432 1356999999987775 6
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHh--CCCccccccccCc
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL--GLDICADTMVGDE 338 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l--gL~~~~dt~vg~~ 338 (875)
||+||+.++..... . .+..+.. ....++.+++.+ |+++..+..+.
T Consensus 103 tv~~nl~~~~~~~~----~---~~~~~~~------------------------~~~~~~~~l~~l~~gl~~~~~~~~~-- 149 (226)
T cd03248 103 SLQDNIAYGLQSCS----F---ECVKEAA------------------------QKAHAHSFISELASGYDTEVGEKGS-- 149 (226)
T ss_pred hHHHHhccccCCCC----H---HHHHHHH------------------------HHcCcHHHHHhccccccchhhcCCC--
Confidence 99999987543110 0 0000000 011234567777 77766665554
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEe
Q 002833 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (875)
Q Consensus 339 ~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~ 418 (875)
.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|+|++.|++. ++ ..||+|++|+
T Consensus 150 ---~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~-~~-~~~d~i~~l~ 222 (226)
T cd03248 150 ---QLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE--RRTVLVIAHRLS-TV-ERADQILVLD 222 (226)
T ss_pred ---cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC--CCEEEEEECCHH-HH-HhCCEEEEec
Confidence 5999999999999999999999999999999999999999999999864 578888888765 55 4599999999
Q ss_pred CCeE
Q 002833 419 EGQI 422 (875)
Q Consensus 419 ~G~i 422 (875)
+|++
T Consensus 223 ~g~i 226 (226)
T cd03248 223 GGRI 226 (226)
T ss_pred CCcC
Confidence 9974
No 292
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=9e-34 Score=367.11 Aligned_cols=206 Identities=23% Similarity=0.276 Sum_probs=171.4
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (875)
.++|+|+|++|+|||.+||+||+|||||||+++|.|+++|+ +|+|.+||.++.+... ++.++||+|++.+|+.
T Consensus 1249 ~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~---~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~g- 1324 (1495)
T PLN03232 1249 PPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELE---KGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSG- 1324 (1495)
T ss_pred CcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCc-
Confidence 45999999999999999999999999999999999999997 9999999999987653 5789999999988875
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccC
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (875)
||||||++... .+.+++++++...+.+ +.+ -.++...||.||+ ..
T Consensus 1325 TIr~NL~~~~~--------------------------~sdeei~~al~~a~l~------~~I--~~lp~GLdt~v~e-~G 1369 (1495)
T PLN03232 1325 TVRFNIDPFSE--------------------------HNDADLWEALERAHIK------DVI--DRNPFGLDAEVSE-GG 1369 (1495)
T ss_pred cHHHHcCCCCC--------------------------CCHHHHHHHHHHcCCH------HHH--HhCcCCCCceecC-CC
Confidence 99999976421 1112233333322221 112 2456678999986 34
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCC
Q 002833 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (875)
Q Consensus 341 rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G 420 (875)
..||||||||++|||||+.+|+||+|||||++||+.|...|.+.|++.. .++|+|++.|+. ++...||+|++|++|
T Consensus 1370 ~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~--~~~TvI~IAHRl--~ti~~~DrIlVL~~G 1445 (1495)
T PLN03232 1370 ENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF--KSCTMLVIAHRL--NTIIDCDKILVLSSG 1445 (1495)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEeCCH--HHHHhCCEEEEEECC
Confidence 5699999999999999999999999999999999999999999999875 378999888876 456679999999999
Q ss_pred eEEEecChhhHH
Q 002833 421 QIVYQGPRDNVL 432 (875)
Q Consensus 421 ~iv~~Gp~~~~~ 432 (875)
+++++|+++++.
T Consensus 1446 ~ivE~Gt~~eLl 1457 (1495)
T PLN03232 1446 QVLEYDSPQELL 1457 (1495)
T ss_pred EEEEECCHHHHH
Confidence 999999999886
No 293
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=7.8e-34 Score=332.94 Aligned_cols=209 Identities=24% Similarity=0.351 Sum_probs=170.6
Q ss_pred ccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc----CceEEEEecCC---CCC
Q 002833 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHD---LHH 257 (875)
Q Consensus 185 ~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~~~yv~Q~d---~~~ 257 (875)
.+|+|+|+.|++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++....+ ++.++|++|+. .++
T Consensus 266 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~ 342 (501)
T PRK10762 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRT---SGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLV 342 (501)
T ss_pred CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCc
Confidence 4799999999999999999999999999999999999986 9999999998754322 34699999995 578
Q ss_pred CCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCC-cccccccc
Q 002833 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVG 336 (875)
Q Consensus 258 ~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg 336 (875)
+.+||.||+.+........ ... ..... +....++++++.+||. +..++.++
T Consensus 343 ~~~tv~e~l~~~~~~~~~~-~~~---~~~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~ 394 (501)
T PRK10762 343 LGMSVKENMSLTALRYFSR-AGG---SLKHA------------------------DEQQAVSDFIRLFNIKTPSMEQAIG 394 (501)
T ss_pred CCCcHHHHhhhhhhhhhcc-ccc---ccCHH------------------------HHHHHHHHHHHhcCCCCCCccCchh
Confidence 8999999998753110000 000 00000 0112356789999995 67787776
Q ss_pred CccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEE
Q 002833 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (875)
Q Consensus 337 ~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vil 416 (875)
+ |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|.|+|++.|++ .++.++||+|++
T Consensus 395 ~-----LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tviivtHd~-~~~~~~~d~v~~ 467 (501)
T PRK10762 395 L-----LSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKA-EGLSIILVSSEM-PEVLGMSDRILV 467 (501)
T ss_pred h-----CCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHH-CCCEEEEEcCCH-HHHHhhCCEEEE
Confidence 5 999999999999999999999999999999999999999999999976 488988887654 588899999999
Q ss_pred EeCCeEEEecChhhH
Q 002833 417 LSEGQIVYQGPRDNV 431 (875)
Q Consensus 417 L~~G~iv~~Gp~~~~ 431 (875)
|++|+++..|+++++
T Consensus 468 l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 468 MHEGRISGEFTREQA 482 (501)
T ss_pred EECCEEEEEeccccC
Confidence 999999999988765
No 294
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=7.4e-34 Score=295.37 Aligned_cols=184 Identities=25% Similarity=0.311 Sum_probs=149.9
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc---cCceEEEEecCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~l 260 (875)
+.+|+|+|+.|++|++++|+|||||||||||++|+|+++|. +|+|.++|.++.... .++.++|++|++.+++ .
T Consensus 21 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~-~ 96 (207)
T cd03369 21 PPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAE---EGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFS-G 96 (207)
T ss_pred cccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCeEEECCEEhHHCCHHHHHhhEEEEecCCcccC-c
Confidence 35999999999999999999999999999999999999886 999999999875432 2467999999987776 5
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccC
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (875)
||+||+.+... .. .+ .+.+.++ + + ...
T Consensus 97 tv~~~l~~~~~---~~-----------------------~~---------------~~~~~l~---~----~-----~~~ 123 (207)
T cd03369 97 TIRSNLDPFDE---YS-----------------------DE---------------EIYGALR---V----S-----EGG 123 (207)
T ss_pred cHHHHhcccCC---CC-----------------------HH---------------HHHHHhh---c----c-----CCC
Confidence 99999965310 00 00 0111222 1 2 234
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCC
Q 002833 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (875)
Q Consensus 341 rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G 420 (875)
+.|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++. .+.|+|++.|++. ++.. +|++++|++|
T Consensus 124 ~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tiii~th~~~-~~~~-~d~v~~l~~g 199 (207)
T cd03369 124 LNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF--TNSTILTIAHRLR-TIID-YDKILVMDAG 199 (207)
T ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCHH-HHhh-CCEEEEEECC
Confidence 5699999999999999999999999999999999999999999999984 3788888887765 4544 9999999999
Q ss_pred eEEEecCh
Q 002833 421 QIVYQGPR 428 (875)
Q Consensus 421 ~iv~~Gp~ 428 (875)
+++.+|++
T Consensus 200 ~i~~~g~~ 207 (207)
T cd03369 200 EVKEYDHP 207 (207)
T ss_pred EEEecCCC
Confidence 99988763
No 295
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=7e-34 Score=333.31 Aligned_cols=221 Identities=20% Similarity=0.260 Sum_probs=174.3
Q ss_pred HhhhccccCCcc--cccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCC-CCCCccEEEECCEeCCCCcc---
Q 002833 170 ALGLLHLVPSKK--RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGK-DLRASGKITYCGHELNEFVP--- 243 (875)
Q Consensus 170 ~l~~~~~~~~~~--~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~-~~~~sG~I~~nG~~~~~~~~--- 243 (875)
++++.++...+. +++.+|+|+|+.|++||+++|+||||||||||||+|+|.++| . +|+|.++|+++.....
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~---~G~i~~~g~~~~~~~~~~~ 333 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKF---EGNVFINGKPVDIRNPAQA 333 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCC---CeEEEECCEECCCCCHHHH
Confidence 345555554431 235699999999999999999999999999999999999985 5 8999999998753221
Q ss_pred -CceEEEEecCC---CCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHH
Q 002833 244 -QRTCAYISQHD---LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTD 319 (875)
Q Consensus 244 -~~~~~yv~Q~d---~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (875)
++.++|++|+. .+++.+||+||+.++..-. ..... ...+ .+.+..++
T Consensus 334 ~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~-~~~~~----~~~~------------------------~~~~~~~~ 384 (500)
T TIGR02633 334 IRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKS-FCFKM----RIDA------------------------AAELQIIG 384 (500)
T ss_pred HhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhh-hccCC----cCCH------------------------HHHHHHHH
Confidence 35689999995 5789999999998753100 00000 0000 00112356
Q ss_pred HHHHHhCCCc-cccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEE
Q 002833 320 YVLKILGLDI-CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIV 398 (875)
Q Consensus 320 ~iL~~lgL~~-~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tvii 398 (875)
.+++.+||.+ ..++.++. |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|+
T Consensus 385 ~~l~~~~l~~~~~~~~~~~-----LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvii 458 (500)
T TIGR02633 385 SAIQRLKVKTASPFLPIGR-----LSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQ-EGVAIIV 458 (500)
T ss_pred HHHHhcCccCCCccCcccc-----CCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHh-CCCEEEE
Confidence 7899999974 56777765 999999999999999999999999999999999999999999999986 4888888
Q ss_pred eecCCchhHHhhcCeEEEEeCCeEEEecChh
Q 002833 399 ALLQPAPETYDLFDDIILLSEGQIVYQGPRD 429 (875)
Q Consensus 399 si~q~~~ei~~lfD~vilL~~G~iv~~Gp~~ 429 (875)
++|++ .++.++||++++|++|+++..++.+
T Consensus 459 vsHd~-~~~~~~~d~v~~l~~G~i~~~~~~~ 488 (500)
T TIGR02633 459 VSSEL-AEVLGLSDRVLVIGEGKLKGDFVNH 488 (500)
T ss_pred ECCCH-HHHHHhCCEEEEEECCEEEEEEccc
Confidence 87655 5788999999999999999877654
No 296
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.5e-35 Score=288.93 Aligned_cols=210 Identities=28% Similarity=0.408 Sum_probs=181.9
Q ss_pred cccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCC
Q 002833 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHG 258 (875)
Q Consensus 182 ~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~ 258 (875)
+++.||+|+|..|++|.+|+++|||||||||||.+++.+++.+ +|+|+++|.++..... .+.++..-|+.....
T Consensus 12 ~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d---~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~ 88 (252)
T COG4604 12 GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD---SGEITIDGLELTSTPSKELAKKLSILKQENHINS 88 (252)
T ss_pred CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcccc---CceEEEeeeecccCChHHHHHHHHHHHhhchhhh
Confidence 4678999999999999999999999999999999999999987 9999999999987643 256778888888888
Q ss_pred CCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCc
Q 002833 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (875)
Q Consensus 259 ~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~ 338 (875)
.+||+|-+.|+---...|. + ..+++..+++.++.|+|++..|..+-
T Consensus 89 rlTV~dLv~FGRfPYSqGR------------------l--------------t~eD~~~I~~aieyl~L~~l~dryLd-- 134 (252)
T COG4604 89 RLTVRDLVGFGRFPYSQGR------------------L--------------TKEDRRIINEAIEYLHLEDLSDRYLD-- 134 (252)
T ss_pred eeEHHHHhhcCCCcccCCC------------------C--------------chHHHHHHHHHHHHhcccchHHHhHH--
Confidence 9999999999843222111 0 01234467889999999998887665
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEe
Q 002833 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (875)
Q Consensus 339 ~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~ 418 (875)
.||||||||.-||..|+.+.+.++||||.++||-..+.++++.||+++++.++|+|+.+|. ..-+-.++|.|+-|.
T Consensus 135 ---~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHD-INfAS~YsD~IVAlK 210 (252)
T COG4604 135 ---ELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHD-INFASCYSDHIVALK 210 (252)
T ss_pred ---hcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEec-ccHHHhhhhheeeec
Confidence 5999999999999999999999999999999999999999999999999999999998765 446677899999999
Q ss_pred CCeEEEecChhhHH
Q 002833 419 EGQIVYQGPRDNVL 432 (875)
Q Consensus 419 ~G~iv~~Gp~~~~~ 432 (875)
+|+++.+|+++++.
T Consensus 211 ~G~vv~~G~~~eii 224 (252)
T COG4604 211 NGKVVKQGSPDEII 224 (252)
T ss_pred CCEEEecCCHHHhc
Confidence 99999999999885
No 297
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.1e-34 Score=333.86 Aligned_cols=209 Identities=20% Similarity=0.331 Sum_probs=170.6
Q ss_pred ccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc----CceEEEEecCC---CCC
Q 002833 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHD---LHH 257 (875)
Q Consensus 185 ~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~~~yv~Q~d---~~~ 257 (875)
.+++|+|+.|++||+++|+||||||||||||+|+|.++|+ +|+|.++|+++....+ ++.++|++|++ .++
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 343 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRT---AGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGII 343 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCC---CceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCc
Confidence 4899999999999999999999999999999999999886 9999999998753211 35689999985 488
Q ss_pred CCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCC-cccccccc
Q 002833 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVG 336 (875)
Q Consensus 258 ~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg 336 (875)
+.+||.||+.++.......... . .... +.+..++.+|+.+||. +..++.++
T Consensus 344 ~~~tv~e~l~~~~~~~~~~~~~--~--~~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~ 395 (501)
T PRK11288 344 PVHSVADNINISARRHHLRAGC--L--INNR------------------------WEAENADRFIRSLNIKTPSREQLIM 395 (501)
T ss_pred CCCCHHHHhccccchhhccccc--c--cChH------------------------HHHHHHHHHHHhcCcccCCccCccc
Confidence 9999999998753211000000 0 0000 0012356789999994 67888887
Q ss_pred CccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEE
Q 002833 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (875)
Q Consensus 337 ~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vil 416 (875)
+ |||||||||+||++|+.+|++|||||||+|||..++.++.+.|+++++ .|.|+|++.|+. .++.++||++++
T Consensus 396 ~-----LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviivsHd~-~~~~~~~d~i~~ 468 (501)
T PRK11288 396 N-----LSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAA-QGVAVLFVSSDL-PEVLGVADRIVV 468 (501)
T ss_pred c-----CCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHhhCCEEEE
Confidence 6 999999999999999999999999999999999999999999999986 488988887654 578899999999
Q ss_pred EeCCeEEEecChhhH
Q 002833 417 LSEGQIVYQGPRDNV 431 (875)
Q Consensus 417 L~~G~iv~~Gp~~~~ 431 (875)
|++|++++.|.++++
T Consensus 469 l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 469 MREGRIAGELAREQA 483 (501)
T ss_pred EECCEEEEEEccccC
Confidence 999999999987653
No 298
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=7.1e-33 Score=301.05 Aligned_cols=195 Identities=23% Similarity=0.325 Sum_probs=150.2
Q ss_pred ccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHHH
Q 002833 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRE 264 (875)
Q Consensus 185 ~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 264 (875)
.+|+|+|+.|++||+++|+|||||||||||++|+|+++|. +|+|.++| .++|++|++.+++. ||+|
T Consensus 51 ~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~---~G~I~i~g----------~i~yv~q~~~l~~~-tv~e 116 (282)
T cd03291 51 PVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPS---EGKIKHSG----------RISFSSQFSWIMPG-TIKE 116 (282)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECC----------EEEEEeCccccccc-CHHH
Confidence 5999999999999999999999999999999999999986 99999988 38999999877774 9999
Q ss_pred HHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCCC
Q 002833 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (875)
Q Consensus 265 tL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLS 344 (875)
|+.+..... .. . .....++. ..+..++.+ ....++.++. ..+.||
T Consensus 117 nl~~~~~~~----~~----~---------------~~~~l~~~---------~l~~~l~~~--~~~~~~~~~~-~~~~LS 161 (282)
T cd03291 117 NIIFGVSYD----EY----R---------------YKSVVKAC---------QLEEDITKF--PEKDNTVLGE-GGITLS 161 (282)
T ss_pred HhhcccccC----HH----H---------------HHHHHHHh---------CCHHHHHhc--cccccceecC-CCCcCC
Confidence 998753210 00 0 00000000 011222222 2222344432 345799
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHH-HHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCeEE
Q 002833 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFL-KQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIV 423 (875)
Q Consensus 345 GGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L-~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~iv 423 (875)
|||||||+||++|+.+|++|+|||||+|||+.+...+.+.+ +.+. .+.|+|++.|++. ++ ..||++++|++|+++
T Consensus 162 gGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~--~~~tIiiisH~~~-~~-~~~d~i~~l~~G~i~ 237 (282)
T cd03291 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM--ANKTRILVTSKME-HL-KKADKILILHEGSSY 237 (282)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh--CCCEEEEEeCChH-HH-HhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999864 5554 3688888887765 44 579999999999999
Q ss_pred EecChhhHH
Q 002833 424 YQGPRDNVL 432 (875)
Q Consensus 424 ~~Gp~~~~~ 432 (875)
+.|+++++.
T Consensus 238 ~~g~~~~~~ 246 (282)
T cd03291 238 FYGTFSELQ 246 (282)
T ss_pred EECCHHHHH
Confidence 999988764
No 299
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=3.3e-33 Score=298.32 Aligned_cols=191 Identities=26% Similarity=0.288 Sum_probs=155.4
Q ss_pred ccccceeEEEe-----CCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCC
Q 002833 185 RILKDVSGIVK-----PSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGE 259 (875)
Q Consensus 185 ~IL~~vs~~i~-----pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~ 259 (875)
..|+|+++.++ +||+++|+|||||||||||++|+|.++|+ +|+|.++|. .++|++|+....+.
T Consensus 8 ~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~---~G~i~~~g~---------~i~~~~q~~~~~~~ 75 (246)
T cd03237 8 KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPD---EGDIEIELD---------TVSYKPQYIKADYE 75 (246)
T ss_pred cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CCeEEECCc---------eEEEecccccCCCC
Confidence 36677777776 79999999999999999999999999986 999999984 58999999877788
Q ss_pred CCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCcc
Q 002833 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (875)
Q Consensus 260 lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (875)
+||+|++.+.....+. .....+++++.+||.+..++.+++
T Consensus 76 ~tv~e~l~~~~~~~~~--------------------------------------~~~~~~~~l~~l~l~~~~~~~~~~-- 115 (246)
T cd03237 76 GTVRDLLSSITKDFYT--------------------------------------HPYFKTEIAKPLQIEQILDREVPE-- 115 (246)
T ss_pred CCHHHHHHHHhhhccc--------------------------------------cHHHHHHHHHHcCCHHHhhCChhh--
Confidence 9999999764221100 001135578889998887777764
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeC
Q 002833 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (875)
Q Consensus 340 ~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~ 419 (875)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..++|+|++.|+. .++..+||+|++|++
T Consensus 116 ---LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~-~~~~~~~d~i~~l~~ 191 (246)
T cd03237 116 ---LSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDI-IMIDYLADRLIVFEG 191 (246)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEcC
Confidence 9999999999999999999999999999999999999999999999876688988887664 477789999999976
Q ss_pred CeEE--EecChhhH
Q 002833 420 GQIV--YQGPRDNV 431 (875)
Q Consensus 420 G~iv--~~Gp~~~~ 431 (875)
+..+ ..++++.+
T Consensus 192 ~~~~~~~~~~~~~~ 205 (246)
T cd03237 192 EPSVNGVANPPQSL 205 (246)
T ss_pred CCeeEEEeCCchHH
Confidence 5443 33444443
No 300
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=9.7e-34 Score=286.55 Aligned_cols=156 Identities=26% Similarity=0.476 Sum_probs=138.0
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (875)
+.+++|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 15 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~- 90 (173)
T cd03246 15 PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT---SGRVRLDGADISQWDPNELGDHVGYLPQDDELFSG- 90 (173)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEEcccCCHHHHHhheEEECCCCccccC-
Confidence 45999999999999999999999999999999999999986 9999999998765332 4679999999766653
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccC
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (875)
||+||+
T Consensus 91 tv~~~l-------------------------------------------------------------------------- 96 (173)
T cd03246 91 SIAENI-------------------------------------------------------------------------- 96 (173)
T ss_pred cHHHHC--------------------------------------------------------------------------
Confidence 766542
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCC
Q 002833 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (875)
Q Consensus 341 rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G 420 (875)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.|++. .+ +.||++++|++|
T Consensus 97 --LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~-~~-~~~d~v~~l~~G 171 (173)
T cd03246 97 --LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKA-AGATRIVIAHRPE-TL-ASADRILVLEDG 171 (173)
T ss_pred --cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-HH-HhCCEEEEEECC
Confidence 899999999999999999999999999999999999999999999975 4889999888764 44 689999999999
Q ss_pred eE
Q 002833 421 QI 422 (875)
Q Consensus 421 ~i 422 (875)
++
T Consensus 172 ~i 173 (173)
T cd03246 172 RV 173 (173)
T ss_pred CC
Confidence 74
No 301
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.9e-33 Score=294.64 Aligned_cols=194 Identities=22% Similarity=0.339 Sum_probs=148.5
Q ss_pred CcccccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc-------cCceEEEEe
Q 002833 179 SKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-------PQRTCAYIS 251 (875)
Q Consensus 179 ~~~~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~-------~~~~~~yv~ 251 (875)
.+.+.+++|+|+|+.|++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++
T Consensus 9 ~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~ 85 (218)
T cd03290 9 SWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTL---EGKVHWSNKNESEPSFEATRSRNRYSVAYAA 85 (218)
T ss_pred ecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCcccccccccccchhhcceEEEEc
Confidence 3433467999999999999999999999999999999999999886 999999998765321 135699999
Q ss_pred cCCCCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCcc-
Q 002833 252 QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDIC- 330 (875)
Q Consensus 252 Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~- 330 (875)
|++.++ ..||+||+.+..... . . + .+.+++.++|.+.
T Consensus 86 q~~~~~-~~t~~~nl~~~~~~~----~---------~----------~------------------~~~~~~~~~l~~~~ 123 (218)
T cd03290 86 QKPWLL-NATVEENITFGSPFN----K---------Q----------R------------------YKAVTDACSLQPDI 123 (218)
T ss_pred CCCccc-cccHHHHHhhcCcCC----H---------H----------H------------------HHHHHHHhCcHHHH
Confidence 998777 579999998753210 0 0 0 0112222232221
Q ss_pred ------ccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHH--HHHHHHHhCCcEEEEeecC
Q 002833 331 ------ADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICK--FLKQMVHILDVTMIVALLQ 402 (875)
Q Consensus 331 ------~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~--~L~~l~~~~~~tviisi~q 402 (875)
.++..+ ..+..|||||||||+||++|+.+|++|+|||||+|||+.+...+.+ .++.+.+ .+.|+|++.|+
T Consensus 124 ~~~~~~~~~~~~-~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~-~~~tii~~sH~ 201 (218)
T cd03290 124 DLLPFGDQTEIG-ERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQD-DKRTLVLVTHK 201 (218)
T ss_pred HhCcCccccCcc-cCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhc-CCCEEEEEeCC
Confidence 122222 2345699999999999999999999999999999999999999998 5666543 57899999888
Q ss_pred CchhHHhhcCeEEEEeCCe
Q 002833 403 PAPETYDLFDDIILLSEGQ 421 (875)
Q Consensus 403 ~~~ei~~lfD~vilL~~G~ 421 (875)
+. .+ ..+|++++|++|.
T Consensus 202 ~~-~~-~~~d~i~~l~~G~ 218 (218)
T cd03290 202 LQ-YL-PHADWIIAMKDGS 218 (218)
T ss_pred hH-HH-hhCCEEEEecCCC
Confidence 75 44 5799999999884
No 302
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=3.4e-33 Score=329.76 Aligned_cols=192 Identities=27% Similarity=0.381 Sum_probs=155.2
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (875)
+++|+|+|++|+||+.++|+||||||||||+|+|+|+++|+ +|+|.+||.++.+... ++.++||+|++.+|+ .
T Consensus 335 ~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~ 410 (529)
T TIGR02857 335 APALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPLADADADSWRDQIAWVPQHPFLFA-G 410 (529)
T ss_pred cccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEehhhCCHHHHHhheEEEcCCCcccC-c
Confidence 36999999999999999999999999999999999999997 9999999999877643 467999999988886 5
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccC
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (875)
|++||+.++... .+.+++.+++...+ .++.++ .|++..||.+|+ ..
T Consensus 411 ti~~Ni~~~~~~-------------------------~~~~~i~~a~~~~~------l~~~i~--~lp~Gldt~v~e-~g 456 (529)
T TIGR02857 411 TIAENIRLARPD-------------------------ASDAEIRRALERAG------LDEFVA--ALPQGLDTLIGE-GG 456 (529)
T ss_pred CHHHHHhccCCC-------------------------CCHHHHHHHHHHcC------cHHHHH--hCcccccchhcc-cc
Confidence 999999875311 01111222222111 111222 345677999986 44
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEE
Q 002833 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (875)
Q Consensus 341 rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL 417 (875)
..||||||||++|||+|+.+|++++|||||++||+.++..+.+.|+++. .++|+|+..|++ +..+.||+|++|
T Consensus 457 ~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~--~~~~~~d~i~~l 529 (529)
T TIGR02857 457 AGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA--QGRTVLLVTHRL--ALAERADRIVVL 529 (529)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc--CCCEEEEEecCH--HHHHhCCEEEeC
Confidence 5699999999999999999999999999999999999999999999975 478999988886 456789999985
No 303
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.1e-33 Score=292.60 Aligned_cols=181 Identities=20% Similarity=0.244 Sum_probs=151.6
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCC--ccCceEEEEecCCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF--VPQRTCAYISQHDLHHGEMT 261 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~--~~~~~~~yv~Q~d~~~~~lT 261 (875)
+++|+|+|++|++||+++|+||||||||||+++|+|+++|+ +|+|+++|+++... ..++.++|++|+..+++.+|
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 90 (200)
T PRK13540 14 QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE---KGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLT 90 (200)
T ss_pred eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeeEEECCCccccCHHHHHhheEEeccccccCcCCC
Confidence 46999999999999999999999999999999999999986 99999999887532 12467999999988889999
Q ss_pred HHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCC
Q 002833 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (875)
Q Consensus 262 V~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (875)
|+||+.+...... ....++++++.+++.+..+..+++
T Consensus 91 v~~~~~~~~~~~~---------------------------------------~~~~~~~~l~~~~l~~~~~~~~~~---- 127 (200)
T PRK13540 91 LRENCLYDIHFSP---------------------------------------GAVGITELCRLFSLEHLIDYPCGL---- 127 (200)
T ss_pred HHHHHHHHHhcCc---------------------------------------chHHHHHHHHHcCCchhhhCChhh----
Confidence 9999987532100 001246688899998777776664
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeE
Q 002833 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (875)
Q Consensus 342 gLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~v 414 (875)
|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++++ .+.|+|++.|++. ..+.+|..
T Consensus 128 -LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~--~~~~~d~~ 196 (200)
T PRK13540 128 -LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRA-KGGAVLLTSHQDL--PLNKADYE 196 (200)
T ss_pred -cCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHH-cCCEEEEEeCCch--hccccchh
Confidence 999999999999999999999999999999999999999999999865 4889999888754 44556654
No 304
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.1e-33 Score=318.56 Aligned_cols=216 Identities=29% Similarity=0.361 Sum_probs=180.8
Q ss_pred hhhccccCCcccccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc----Cce
Q 002833 171 LGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRT 246 (875)
Q Consensus 171 l~~~~~~~~~~~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~ 246 (875)
+++.++.+++ +..++|+|||+.++|||+++|+|.||||||||+|+|+|.++|+ +|+|.++|++.....+ +.-
T Consensus 9 l~~~~i~K~F-ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~---~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 9 LELRGISKSF-GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred eeeecceEEc-CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC---CceEEECCEEccCCCHHHHHhCC
Confidence 3444454433 4578999999999999999999999999999999999999997 9999999999865444 245
Q ss_pred EEEEecCCCCCCCCCHHHHHHHhhhhcCC-cchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHh
Q 002833 247 CAYISQHDLHHGEMTVRETLDFSGRCLGV-GTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL 325 (875)
Q Consensus 247 ~~yv~Q~d~~~~~lTV~EtL~f~a~~~~~-~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l 325 (875)
|+.|.|+..+.|+|||.||+.++...... +. + +.. ..+..+..+|+.+
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~-------i-------------d~~-----------~m~~~A~~~l~~l 133 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGL-------I-------------DRK-----------AMRRRARELLARL 133 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCc-------c-------------CHH-----------HHHHHHHHHHHHc
Confidence 89999999999999999999876543221 10 0 000 1123457789999
Q ss_pred CCCccccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCch
Q 002833 326 GLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAP 405 (875)
Q Consensus 326 gL~~~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ 405 (875)
|+....+++|++ ||+||||.|.||+||..++++|+|||||+.|+...+..+.+.++++.. .|.++|...| -.+
T Consensus 134 g~~~~~~~~v~~-----LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~-~Gv~ii~ISH-rl~ 206 (500)
T COG1129 134 GLDIDPDTLVGD-----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKA-QGVAIIYISH-RLD 206 (500)
T ss_pred CCCCChhhhhhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEcC-cHH
Confidence 996558889887 999999999999999999999999999999999999999999999986 5888888655 678
Q ss_pred hHHhhcCeEEEEeCCeEEEecCh
Q 002833 406 ETYDLFDDIILLSEGQIVYQGPR 428 (875)
Q Consensus 406 ei~~lfD~vilL~~G~iv~~Gp~ 428 (875)
|++++||+|.||.||+++..++.
T Consensus 207 Ei~~i~DritVlRDG~~v~~~~~ 229 (500)
T COG1129 207 EVFEIADRITVLRDGRVVGTRPT 229 (500)
T ss_pred HHHHhcCEEEEEeCCEEeeeccc
Confidence 99999999999999999988873
No 305
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=1e-33 Score=287.59 Aligned_cols=161 Identities=29% Similarity=0.479 Sum_probs=141.0
Q ss_pred ccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCC--ccCceEEEEecCCCCCCCCCH
Q 002833 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF--VPQRTCAYISQHDLHHGEMTV 262 (875)
Q Consensus 185 ~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~--~~~~~~~yv~Q~d~~~~~lTV 262 (875)
.+|+|+|++|++||+++|+|||||||||||++|+|..+|. +|+|.++|.++... ..++.++|++|++.+++ .||
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~-~tv 91 (178)
T cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ---QGEITLDGVPVSDLEKALSSLISVLNQRPYLFD-TTL 91 (178)
T ss_pred cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCEEHHHHHHHHHhhEEEEccCCeeec-ccH
Confidence 5999999999999999999999999999999999999886 99999999976532 12467999999887665 588
Q ss_pred HHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCC
Q 002833 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (875)
Q Consensus 263 ~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (875)
+||+ ...
T Consensus 92 ~~~i-------------------------------------------------------------------------~~~ 98 (178)
T cd03247 92 RNNL-------------------------------------------------------------------------GRR 98 (178)
T ss_pred HHhh-------------------------------------------------------------------------ccc
Confidence 7765 013
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCeE
Q 002833 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (875)
Q Consensus 343 LSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~i 422 (875)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++. .+.|+|++.|++. ++ +.+|++++|++|++
T Consensus 99 LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~--~~~tii~~sh~~~-~~-~~~d~~~~l~~g~i 174 (178)
T cd03247 99 FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL--KDKTLIWITHHLT-GI-EHMDKILFLENGKI 174 (178)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHH-HH-HhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999985 3788988887765 45 57999999999999
Q ss_pred EEec
Q 002833 423 VYQG 426 (875)
Q Consensus 423 v~~G 426 (875)
+++|
T Consensus 175 ~~~~ 178 (178)
T cd03247 175 IMQG 178 (178)
T ss_pred EecC
Confidence 8765
No 306
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=4.8e-33 Score=360.79 Aligned_cols=206 Identities=20% Similarity=0.248 Sum_probs=170.5
Q ss_pred ccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCCC
Q 002833 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEMT 261 (875)
Q Consensus 185 ~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 261 (875)
.+|+|||++|+|||.+||+|++|||||||+++|.|+++|+ +|+|.+||.++.+... ++.++||+|++.+|+. |
T Consensus 1300 ~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~---~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~g-T 1375 (1522)
T TIGR00957 1300 LVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESA---EGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSG-S 1375 (1522)
T ss_pred ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCC---CCeEEECCEEccccCHHHHHhcCeEECCCCcccCc-c
Confidence 5999999999999999999999999999999999999996 9999999999987654 5789999999999976 9
Q ss_pred HHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCC
Q 002833 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (875)
Q Consensus 262 V~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (875)
|||||+.... .+.+++++++...+.+ +.++ .|++..||.||+ ...
T Consensus 1376 Ir~NLdp~~~--------------------------~sdeei~~al~~a~l~------~~I~--~lp~GLdt~v~e-~G~ 1420 (1522)
T TIGR00957 1376 LRMNLDPFSQ--------------------------YSDEEVWWALELAHLK------TFVS--ALPDKLDHECAE-GGE 1420 (1522)
T ss_pred HHHHcCcccC--------------------------CCHHHHHHHHHHcCcH------HHHh--hCccCCCceecC-CCC
Confidence 9999973211 1112233333322211 1122 355678999986 345
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCe
Q 002833 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (875)
Q Consensus 342 gLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~ 421 (875)
.||||||||++|||||+.+|+||+|||||++||+.|...|.+.|++.. .++|+|+..|+. ++...+|+|++|++|+
T Consensus 1421 ~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~--~~~TvI~IAHRl--~ti~~~DrIlVld~G~ 1496 (1522)
T TIGR00957 1421 NLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF--EDCTVLTIAHRL--NTIMDYTRVIVLDKGE 1496 (1522)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCH--HHHHhCCEEEEEECCE
Confidence 699999999999999999999999999999999999999999999875 378998888876 4667799999999999
Q ss_pred EEEecChhhHHH
Q 002833 422 IVYQGPRDNVLE 433 (875)
Q Consensus 422 iv~~Gp~~~~~~ 433 (875)
|+++|+++++++
T Consensus 1497 IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1497 VAEFGAPSNLLQ 1508 (1522)
T ss_pred EEEECCHHHHHh
Confidence 999999998864
No 307
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=9.9e-34 Score=288.29 Aligned_cols=166 Identities=33% Similarity=0.532 Sum_probs=139.3
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (875)
+.+|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++....+ ++.++|++|
T Consensus 12 ~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~~~~~i~~~~q-------- 80 (180)
T cd03214 12 RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDGKDLASLSPKELARKIAYVPQ-------- 80 (180)
T ss_pred eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCcCCHHHHHHHHhHHHH--------
Confidence 46999999999999999999999999999999999999986 9999999998754321 123455554
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccC
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (875)
+++.+||.+..++.+.
T Consensus 81 ------------------------------------------------------------~l~~~gl~~~~~~~~~---- 96 (180)
T cd03214 81 ------------------------------------------------------------ALELLGLAHLADRPFN---- 96 (180)
T ss_pred ------------------------------------------------------------HHHHcCCHhHhcCCcc----
Confidence 2345566555454444
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCC
Q 002833 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (875)
Q Consensus 341 rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G 420 (875)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.+.|+|++.|++. ++.+++|++++|++|
T Consensus 97 -~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g 174 (180)
T cd03214 97 -ELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILLKDG 174 (180)
T ss_pred -cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECC
Confidence 599999999999999999999999999999999999999999999997644788888877654 677899999999999
Q ss_pred eEEEec
Q 002833 421 QIVYQG 426 (875)
Q Consensus 421 ~iv~~G 426 (875)
++++.|
T Consensus 175 ~i~~~~ 180 (180)
T cd03214 175 RIVAQG 180 (180)
T ss_pred EEEecC
Confidence 998754
No 308
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=2.6e-33 Score=329.04 Aligned_cols=205 Identities=19% Similarity=0.252 Sum_probs=167.9
Q ss_pred cccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc----CceEEEEecCC---CCCC
Q 002833 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHD---LHHG 258 (875)
Q Consensus 186 IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~~~yv~Q~d---~~~~ 258 (875)
+|+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++....+ ++.++|++|+. .+++
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~ 354 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPAR---GGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYL 354 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccC
Confidence 699999999999999999999999999999999999886 9999999998764322 34689999974 4788
Q ss_pred CCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCC-ccccccccC
Q 002833 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVGD 337 (875)
Q Consensus 259 ~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~ 337 (875)
.+||.|++......... .. .... +.+..++++|+.+||. +..++.+++
T Consensus 355 ~~t~~~~l~~~~~~~~~-~~------~~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~~ 403 (510)
T PRK15439 355 DAPLAWNVCALTHNRRG-FW------IKPA------------------------RENAVLERYRRALNIKFNHAEQAART 403 (510)
T ss_pred CCcHHHHHHhhhhhhhc-cc------cChH------------------------HHHHHHHHHHHHcCCCCCCccCcccc
Confidence 89999999642110000 00 0000 0112356789999997 677887765
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEE
Q 002833 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (875)
Q Consensus 338 ~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL 417 (875)
|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++++ .+.|+|++.|++ .++.++||++++|
T Consensus 404 -----LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tiIivsHd~-~~i~~~~d~i~~l 476 (510)
T PRK15439 404 -----LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAA-QNVAVLFISSDL-EEIEQMADRVLVM 476 (510)
T ss_pred -----CCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999987 488888877654 5788999999999
Q ss_pred eCCeEEEecChhhH
Q 002833 418 SEGQIVYQGPRDNV 431 (875)
Q Consensus 418 ~~G~iv~~Gp~~~~ 431 (875)
++|++++.|.++++
T Consensus 477 ~~G~i~~~~~~~~~ 490 (510)
T PRK15439 477 HQGEISGALTGAAI 490 (510)
T ss_pred ECCEEEEEEccccC
Confidence 99999998877643
No 309
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.3e-33 Score=290.98 Aligned_cols=185 Identities=27% Similarity=0.376 Sum_probs=141.1
Q ss_pred ccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHHH
Q 002833 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRE 264 (875)
Q Consensus 185 ~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 264 (875)
.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++| .++|++|++.++ .+||+|
T Consensus 19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~---~G~i~~~g----------~i~~~~q~~~l~-~~t~~e 84 (204)
T cd03250 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKL---SGSVSVPG----------SIAYVSQEPWIQ-NGTIRE 84 (204)
T ss_pred ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCC---CCeEEEcC----------EEEEEecCchhc-cCcHHH
Confidence 6999999999999999999999999999999999999986 99999998 599999998777 569999
Q ss_pred HHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCCC
Q 002833 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (875)
Q Consensus 265 tL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLS 344 (875)
|+.+..... . + ...++.... .....++.+ ....++.+. ...+.||
T Consensus 85 nl~~~~~~~---~---------~--------------~~~~~~~~~------~l~~~~~~~--~~~~~~~~~-~~~~~lS 129 (204)
T cd03250 85 NILFGKPFD---E---------E--------------RYEKVIKAC------ALEPDLEIL--PDGDLTEIG-EKGINLS 129 (204)
T ss_pred HhccCCCcC---H---------H--------------HHHHHHHHc------CcHHHHHhc--cCcccceec-CCCCcCC
Confidence 998753210 0 0 000000000 011112222 111223332 2345699
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCe
Q 002833 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICK-FLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (875)
Q Consensus 345 GGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~-~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~ 421 (875)
|||||||+||++|+.+|++++|||||+|||+.+...+.+ .++++.+ .+.|+|++.|++. .+.. +|++++|++|+
T Consensus 130 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~-~~~tvi~~sh~~~-~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 130 GGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLL-NNKTRILVTHQLQ-LLPH-ADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcc-CCCEEEEEeCCHH-HHhh-CCEEEEEeCCC
Confidence 999999999999999999999999999999999999998 4666655 3789999888864 4545 99999999985
No 310
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.2e-32 Score=353.92 Aligned_cols=230 Identities=20% Similarity=0.287 Sum_probs=160.7
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEE-CCEeCCCCcc---CceEEEEecCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITY-CGHELNEFVP---QRTCAYISQHDLHHGE 259 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~-nG~~~~~~~~---~~~~~yv~Q~d~~~~~ 259 (875)
.++|+|+|+.|+|||+++|+||||||||||+++|+|+++|+ +|+|++ +|+++.+... ++.++||+|++.+|+
T Consensus 398 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~- 473 (1466)
T PTZ00265 398 VEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPT---EGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFS- 473 (1466)
T ss_pred CceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCC---CCeEEEeCCcchhhCCHHHHHHhccEecccccchh-
Confidence 46999999999999999999999999999999999999997 999999 4687765432 467999999998887
Q ss_pred CCHHHHHHHhhhhc-CCcc---hhHH---H-HHH-----HHHHH----hcCCCCChhHHHHHHHHHHhcchhhhHHHHHH
Q 002833 260 MTVRETLDFSGRCL-GVGT---RYEL---L-AEL-----SRREK----QAGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 322 (875)
Q Consensus 260 lTV~EtL~f~a~~~-~~~~---~~~~---~-~~l-----~~~e~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL 322 (875)
.||+||+.++.... +... .+.. . .+. ..+++ ...+....+.+++++............+.+++
T Consensus 474 ~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~ 553 (1466)
T PTZ00265 474 NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVS 553 (1466)
T ss_pred ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHH
Confidence 49999999974210 0000 0000 0 000 00000 00000000000000000000000011223333
Q ss_pred HHh-------CCCccccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcE
Q 002833 323 KIL-------GLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVT 395 (875)
Q Consensus 323 ~~l-------gL~~~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~t 395 (875)
+.+ +|++..||.+|.. ...|||||||||+|||||+.+|+||+|||||++||+.++..|.+.|+++.+..++|
T Consensus 554 ~~~~l~~~i~~lp~g~dT~vg~~-g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~T 632 (1466)
T PTZ00265 554 KKVLIHDFVSALPDKYETLVGSN-ASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRI 632 (1466)
T ss_pred HHhCcHHHHHhCccccCceeCCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCE
Confidence 333 4566789999864 66799999999999999999999999999999999999999999999987545789
Q ss_pred EEEeecCCchhHHhhcCeEEEEeCC
Q 002833 396 MIVALLQPAPETYDLFDDIILLSEG 420 (875)
Q Consensus 396 viisi~q~~~ei~~lfD~vilL~~G 420 (875)
+|++.|++. ..+.||+|++|++|
T Consensus 633 vIiIsHrls--~i~~aD~Iivl~~g 655 (1466)
T PTZ00265 633 TIIIAHRLS--TIRYANTIFVLSNR 655 (1466)
T ss_pred EEEEeCCHH--HHHhCCEEEEEeCC
Confidence 999888764 45789999999986
No 311
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.6e-33 Score=272.77 Aligned_cols=195 Identities=24% Similarity=0.382 Sum_probs=166.2
Q ss_pred cccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCC
Q 002833 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHG 258 (875)
Q Consensus 182 ~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~ 258 (875)
.+..||+++|+.+++||..+|.||||||||||||++|.+..|+ +|++++.|++++...+ +..++|+.|.+.+|+
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~---~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg 90 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFG 90 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCC---CceEEEcCccccccChHHHHHHHHHHHcCccccc
Confidence 4567999999999999999999999999999999999999997 9999999999988765 578999999999999
Q ss_pred CCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccc-cccccC
Q 002833 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICA-DTMVGD 337 (875)
Q Consensus 259 ~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~-dt~vg~ 337 (875)
+ ||.+||-|..+.+.. +||++ .....|+.++|.+.. +..
T Consensus 91 ~-tVeDNlifP~~~r~r-------------------r~dr~-----------------aa~~llar~~l~~~~L~k~--- 130 (223)
T COG4619 91 D-TVEDNLIFPWQIRNR-------------------RPDRA-----------------AALDLLARFALPDSILTKN--- 130 (223)
T ss_pred c-chhhccccchHHhcc-------------------CCChH-----------------HHHHHHHHcCCchhhhcch---
Confidence 8 999999998765422 12221 123467888887643 333
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEE
Q 002833 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (875)
Q Consensus 338 ~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL 417 (875)
+..||||||||++++|-|..-|+||+|||||+.||.+++..|-+.|.++.+..+..++..+|.+ .+..+.||+++-+
T Consensus 131 --it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~-dqa~rha~k~itl 207 (223)
T COG4619 131 --ITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDK-DQAIRHADKVITL 207 (223)
T ss_pred --hhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecCh-HHHhhhhheEEEe
Confidence 3459999999999999999999999999999999999999999999999976677777766655 4677899999999
Q ss_pred eCCeE
Q 002833 418 SEGQI 422 (875)
Q Consensus 418 ~~G~i 422 (875)
..|++
T Consensus 208 ~~G~~ 212 (223)
T COG4619 208 QPGHA 212 (223)
T ss_pred ccCcc
Confidence 99976
No 312
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=2.5e-32 Score=323.43 Aligned_cols=190 Identities=18% Similarity=0.218 Sum_probs=154.7
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (875)
.++|+|+|++|+||+.++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+|+ .
T Consensus 336 ~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~-~ 411 (547)
T PRK10522 336 GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQ---SGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFD-Q 411 (547)
T ss_pred CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEECCCCCHHHHhhheEEEecChhHHH-H
Confidence 35999999999999999999999999999999999999997 9999999999876543 468999999877665 4
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCc--
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE-- 338 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~-- 338 (875)
|++|| . .. .+ ...+++.++.+++....+ .++.
T Consensus 412 ti~~n---~-----~~---------------------~~---------------~~~~~~~~~~~~l~~~~~--~~~~~~ 445 (547)
T PRK10522 412 LLGPE---G-----KP---------------------AN---------------PALVEKWLERLKMAHKLE--LEDGRI 445 (547)
T ss_pred hhccc---c-----Cc---------------------hH---------------HHHHHHHHHHcCCchhhh--ccccCC
Confidence 77776 1 00 00 011344666777765433 2221
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEe
Q 002833 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (875)
Q Consensus 339 ~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~ 418 (875)
....||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|.+..+..++|+|++.|++ +....||+|++|+
T Consensus 446 ~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~--~~~~~~d~i~~l~ 523 (547)
T PRK10522 446 SNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDD--HYFIHADRLLEMR 523 (547)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEech--HHHHhCCEEEEEE
Confidence 13469999999999999999999999999999999999999999999876543578999988886 5678899999999
Q ss_pred CCeEEEe
Q 002833 419 EGQIVYQ 425 (875)
Q Consensus 419 ~G~iv~~ 425 (875)
+|+++..
T Consensus 524 ~G~i~e~ 530 (547)
T PRK10522 524 NGQLSEL 530 (547)
T ss_pred CCEEEEe
Confidence 9999866
No 313
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=6.9e-33 Score=358.77 Aligned_cols=207 Identities=21% Similarity=0.277 Sum_probs=171.8
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (875)
..+|+|||++|+|||.++|+|++|||||||+++|.|+++|. +|+|.+||.++.+... ++.++||+|++.+|..
T Consensus 1323 ~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~---~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~g- 1398 (1560)
T PTZ00243 1323 PLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVC---GGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDG- 1398 (1560)
T ss_pred CceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEcccCCHHHHHhcceEECCCCccccc-
Confidence 35999999999999999999999999999999999999996 9999999999987643 5789999999988875
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccC
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (875)
||||||+.... .+.+++++++...+.+. . +-.|++..||.||+ ..
T Consensus 1399 TIreNIdp~~~--------------------------~sdeeI~~Al~~a~l~~------~--I~~lp~Gldt~vge-~G 1443 (1560)
T PTZ00243 1399 TVRQNVDPFLE--------------------------ASSAEVWAALELVGLRE------R--VASESEGIDSRVLE-GG 1443 (1560)
T ss_pred cHHHHhCcccC--------------------------CCHHHHHHHHHHCCChH------H--HhhCcccccccccC-Cc
Confidence 99999964210 11233344443333211 1 12456778999986 44
Q ss_pred CCCCHHHHHHHHHHHHHhcC-CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeC
Q 002833 341 RGISGGQKKRVTTGEMLVGT-ANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (875)
Q Consensus 341 rgLSGGerkRVsIA~aLv~~-p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~ 419 (875)
..||||||||++|||||+.+ |+||+|||||++||+.+...|.+.|++.. .++|+|++.|+. ++...||+|++|++
T Consensus 1444 ~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~--~~~TvI~IAHRl--~ti~~~DrIlVLd~ 1519 (1560)
T PTZ00243 1444 SNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF--SAYTVITIAHRL--HTVAQYDKIIVMDH 1519 (1560)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC--CCCEEEEEeccH--HHHHhCCEEEEEEC
Confidence 56999999999999999995 89999999999999999999999999864 368998888876 57788999999999
Q ss_pred CeEEEecChhhHHH
Q 002833 420 GQIVYQGPRDNVLE 433 (875)
Q Consensus 420 G~iv~~Gp~~~~~~ 433 (875)
|+|++.|+++++++
T Consensus 1520 G~VvE~Gt~~eLl~ 1533 (1560)
T PTZ00243 1520 GAVAEMGSPRELVM 1533 (1560)
T ss_pred CEEEEECCHHHHHh
Confidence 99999999999863
No 314
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.7e-32 Score=323.61 Aligned_cols=221 Identities=23% Similarity=0.285 Sum_probs=165.1
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCH
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 262 (875)
.+++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.+++. ..++|++|++.+++.+||
T Consensus 19 ~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~---~G~i~~~~~--------~~i~~v~Q~~~~~~~~tv 87 (556)
T PRK11819 19 KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF---EGEARPAPG--------IKVGYLPQEPQLDPEKTV 87 (556)
T ss_pred CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC--------CEEEEEecCCCCCCCCcH
Confidence 356999999999999999999999999999999999999986 999999752 469999999999999999
Q ss_pred HHHHHHhhhh-cCCcchhHHHHHHHHHHHhcCCCCChhHH-------HHHHHHHHh-cchhhhHHHHHHHHhCCCccccc
Q 002833 263 RETLDFSGRC-LGVGTRYELLAELSRREKQAGIKPDPEID-------AFMKAVAVA-GQETSLVTDYVLKILGLDICADT 333 (875)
Q Consensus 263 ~EtL~f~a~~-~~~~~~~~~~~~l~~~e~~~~~~~~~~~~-------~~~~~~~~~-~~~~~~~~~~iL~~lgL~~~~dt 333 (875)
.||+.++... .+. .....+...... .+..+.+ .+.+..... ..+....++.+++.+||.. .+.
T Consensus 88 ~e~l~~~~~~~~~~------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~ 159 (556)
T PRK11819 88 RENVEEGVAEVKAA------LDRFNEIYAAYA-EPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-WDA 159 (556)
T ss_pred HHHHHHhhHHHHHH------HHHHHHHHHHhc-cCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-ccC
Confidence 9999886321 000 000000000000 0000110 111111110 1112345778999999964 666
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCe
Q 002833 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (875)
Q Consensus 334 ~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~ 413 (875)
.+++ |||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|+|++.|+ ..++.++||+
T Consensus 160 ~~~~-----LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~----~~tviiisHd-~~~~~~~~d~ 229 (556)
T PRK11819 160 KVTK-----LSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY----PGTVVAVTHD-RYFLDNVAGW 229 (556)
T ss_pred chhh-----cCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC----CCeEEEEeCC-HHHHHhhcCe
Confidence 6654 9999999999999999999999999999999999999999999986 2477777655 4578889999
Q ss_pred EEEEeCCeEE-EecChhhHH
Q 002833 414 IILLSEGQIV-YQGPRDNVL 432 (875)
Q Consensus 414 vilL~~G~iv-~~Gp~~~~~ 432 (875)
|++|++|+++ |.|+.++..
T Consensus 230 i~~l~~g~i~~~~g~~~~~~ 249 (556)
T PRK11819 230 ILELDRGRGIPWEGNYSSWL 249 (556)
T ss_pred EEEEeCCEEEEecCCHHHHH
Confidence 9999999986 889877643
No 315
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=1.8e-32 Score=329.90 Aligned_cols=204 Identities=24% Similarity=0.364 Sum_probs=174.3
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc-------CceEEEEecCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHDLH 256 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~-------~~~~~yv~Q~d~~ 256 (875)
+.+|+|+|++++|||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|+..+
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l 97 (648)
T PRK10535 21 VEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPT---SGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHL 97 (648)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCccc
Confidence 46999999999999999999999999999999999999986 9999999998865431 3579999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCcccccccc
Q 002833 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (875)
Q Consensus 257 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (875)
++.+|+.||+.+.....+.. .. +....+.++++.+||.+..|+.++
T Consensus 98 ~~~~tv~enl~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~lgl~~~~~~~~~ 143 (648)
T PRK10535 98 LSHLTAAQNVEVPAVYAGLE----------RK------------------------QRLLRAQELLQRLGLEDRVEYQPS 143 (648)
T ss_pred CCCCCHHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHCCChhhhcCCcc
Confidence 99999999998864322210 00 011235678899999988888776
Q ss_pred CccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEE
Q 002833 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (875)
Q Consensus 337 ~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vil 416 (875)
. |||||+||+.||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|++++.|++. ..+.||++++
T Consensus 144 ~-----LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~-~g~tilivsH~~~--~~~~~d~i~~ 215 (648)
T PRK10535 144 Q-----LSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRD-RGHTVIIVTHDPQ--VAAQAERVIE 215 (648)
T ss_pred c-----CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEECCCHH--HHHhCCEEEE
Confidence 4 999999999999999999999999999999999999999999999875 4889999888765 3467999999
Q ss_pred EeCCeEEEecChhhHH
Q 002833 417 LSEGQIVYQGPRDNVL 432 (875)
Q Consensus 417 L~~G~iv~~Gp~~~~~ 432 (875)
|++|+++++|+.++..
T Consensus 216 l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 216 IRDGEIVRNPPAQEKV 231 (648)
T ss_pred EECCEEEeecCccccc
Confidence 9999999999988663
No 316
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-32 Score=278.57 Aligned_cols=153 Identities=32% Similarity=0.516 Sum_probs=133.0
Q ss_pred ccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCCC
Q 002833 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEMT 261 (875)
Q Consensus 185 ~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 261 (875)
.+|+|+|+.+++|++++|+|||||||||||++|+|.++|. +|+|.++|+++..... ++.++|++|+..+++ .|
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t 91 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GT 91 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-ch
Confidence 6999999999999999999999999999999999999986 9999999998754322 356899999875544 35
Q ss_pred HHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCC
Q 002833 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (875)
Q Consensus 262 V~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (875)
|.||+
T Consensus 92 ~~e~l--------------------------------------------------------------------------- 96 (171)
T cd03228 92 IRENI--------------------------------------------------------------------------- 96 (171)
T ss_pred HHHHh---------------------------------------------------------------------------
Confidence 54432
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCe
Q 002833 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (875)
Q Consensus 342 gLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~ 421 (875)
|||||||||+||++|+.+|++++|||||+|||+.++.++.+.|+++.+ +.|+|++.|++. ++.. ||++++|++|+
T Consensus 97 -LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tii~~sh~~~-~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 97 -LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK--GKTVIVIAHRLS-TIRD-ADRIIVLDDGR 171 (171)
T ss_pred -hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC--CCEEEEEecCHH-HHHh-CCEEEEEcCCC
Confidence 899999999999999999999999999999999999999999999853 688888877764 5555 99999999985
No 317
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-33 Score=301.99 Aligned_cols=212 Identities=25% Similarity=0.370 Sum_probs=173.6
Q ss_pred cccccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc---cCceEEEEecCCCC
Q 002833 180 KKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLH 256 (875)
Q Consensus 180 ~~~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~~~yv~Q~d~~ 256 (875)
+.+.++||+++|+.+++|+.++++||+|+||||++++|-.+++++ +|.|.++|+++.+.. .++.+|.||||..+
T Consensus 272 y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~---sG~I~id~qdir~vtq~slR~aIg~VPQDtvL 348 (497)
T COG5265 272 YDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN---SGSITIDGQDIRDVTQQSLRRAIGIVPQDTVL 348 (497)
T ss_pred ccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCc---CceEEEcchhHHHhHHHHHHHHhCcCccccee
Confidence 445678999999999999999999999999999999999999997 999999999987543 25789999998887
Q ss_pred CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCcccccccc
Q 002833 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (875)
Q Consensus 257 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (875)
|.+ |...|+.|+- |+...++...++..... ... +-.|++..||.||
T Consensus 349 FND-ti~yni~ygr-------------------------~~at~eev~aaa~~aqi------~~f--i~~lP~gy~t~Vg 394 (497)
T COG5265 349 FND-TIAYNIKYGR-------------------------PDATAEEVGAAAEAAQI------HDF--IQSLPEGYDTGVG 394 (497)
T ss_pred hhh-hHHHHHhccC-------------------------ccccHHHHHHHHHHhhh------hHH--HHhCchhhhcccc
Confidence 765 9999998862 22222222223222111 111 3357889999999
Q ss_pred CccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEE
Q 002833 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (875)
Q Consensus 337 ~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vil 416 (875)
+...+ |||||||||+|||+++.+|+||++||.||.||+.|..+|...|++.+. +.|.++.-|..+ +.--+|.|+|
T Consensus 395 erglk-lSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~--~rttlviahrls--ti~~adeiiv 469 (497)
T COG5265 395 ERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSA--GRTTLVIAHRLS--TIIDADEIIV 469 (497)
T ss_pred hheee-ccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhC--CCeEEEEeehhh--hccCCceEEE
Confidence 86665 999999999999999999999999999999999999999999999985 566666656554 5556999999
Q ss_pred EeCCeEEEecChhhHHH
Q 002833 417 LSEGQIVYQGPRDNVLE 433 (875)
Q Consensus 417 L~~G~iv~~Gp~~~~~~ 433 (875)
|++|+|++.|.+++++.
T Consensus 470 l~~g~i~erg~h~~ll~ 486 (497)
T COG5265 470 LDNGRIVERGTHEELLA 486 (497)
T ss_pred eeCCEEEecCcHHHHHH
Confidence 99999999999999875
No 318
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.5e-32 Score=283.01 Aligned_cols=178 Identities=20% Similarity=0.284 Sum_probs=146.6
Q ss_pred ccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHHH
Q 002833 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRE 264 (875)
Q Consensus 185 ~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 264 (875)
.+++ +|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... ++.++|++|+...++.+||+|
T Consensus 15 ~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~-~~~~~~~~~~~~~~~~~tv~~ 89 (195)
T PRK13541 15 NLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPS---SGNIYYKNCNINNIA-KPYCTYIGHNLGLKLEMTVFE 89 (195)
T ss_pred EEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCcccChhh-hhhEEeccCCcCCCccCCHHH
Confidence 3554 99999999999999999999999999999999986 999999999875432 356899999988888899999
Q ss_pred HHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCCC
Q 002833 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (875)
Q Consensus 265 tL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLS 344 (875)
|+.+.....+ ....++.+++.+||.+..++.++ .||
T Consensus 90 ~l~~~~~~~~---------------------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LS 125 (195)
T PRK13541 90 NLKFWSEIYN---------------------------------------SAETLYAAIHYFKLHDLLDEKCY-----SLS 125 (195)
T ss_pred HHHHHHHhcc---------------------------------------cHHHHHHHHHHcCCHhhhccChh-----hCC
Confidence 9987532110 01124567888999877777665 499
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeE
Q 002833 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (875)
Q Consensus 345 GGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~v 414 (875)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|++..+ .+.|+|++.|++. + .+.+|-|
T Consensus 126 ~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~-~-i~~~~~~ 192 (195)
T PRK13541 126 SGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKAN-SGGIVLLSSHLES-S-IKSAQIL 192 (195)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCcc-c-cchhhee
Confidence 9999999999999999999999999999999999999999987654 5889999888764 2 3335544
No 319
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=4.6e-32 Score=292.97 Aligned_cols=210 Identities=24% Similarity=0.366 Sum_probs=180.0
Q ss_pred cccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc------CceEEEEecCC-
Q 002833 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP------QRTCAYISQHD- 254 (875)
Q Consensus 182 ~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~------~~~~~yv~Q~d- 254 (875)
....++++||+++++||.++|+|.||||||||=.+|.+++++ +|+|.++|++++.... ++.+-.|+||+
T Consensus 298 ~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s----~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPy 373 (534)
T COG4172 298 DHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS----QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPY 373 (534)
T ss_pred hheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc----CceEEECCccccccChhhhhhhhhhceEEEeCCC
Confidence 346699999999999999999999999999999999999886 7999999999875432 46789999997
Q ss_pred -CCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccc
Q 002833 255 -LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (875)
Q Consensus 255 -~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 333 (875)
.+.|.|||.|-+.-+.+.+.+. +++.| ...++.+.|+..||+...
T Consensus 374 gSLsPRmtV~qII~EGL~vh~~~--------ls~~e------------------------R~~rv~~aL~EVGLDp~~-- 419 (534)
T COG4172 374 GSLSPRMTVGQIIEEGLRVHEPK--------LSAAE------------------------RDQRVIEALEEVGLDPAT-- 419 (534)
T ss_pred CCCCcccCHHHHhhhhhhhcCCC--------CCHHH------------------------HHHHHHHHHHHcCCChhH--
Confidence 5789999999999988876543 12222 223466789999997532
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCe
Q 002833 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (875)
Q Consensus 334 ~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~ 413 (875)
-+.++...|||||||++|||||+.+|++++||||||.||-+-..+|+++|+.+.++.+.+-++.. |+..-+-.+||+
T Consensus 420 --r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFIS-HDL~VvrAl~~~ 496 (534)
T COG4172 420 --RNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFIS-HDLAVVRALCHR 496 (534)
T ss_pred --hhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEe-ccHHHHHHhhce
Confidence 24556679999999999999999999999999999999999999999999999999999988865 456678889999
Q ss_pred EEEEeCCeEEEecChhhHH
Q 002833 414 IILLSEGQIVYQGPRDNVL 432 (875)
Q Consensus 414 vilL~~G~iv~~Gp~~~~~ 432 (875)
|+||.+|+||++||.+++.
T Consensus 497 viVm~~GkiVE~G~~~~if 515 (534)
T COG4172 497 VIVMRDGKIVEQGPTEAVF 515 (534)
T ss_pred EEEEeCCEEeeeCCHHHHh
Confidence 9999999999999999883
No 320
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-32 Score=319.78 Aligned_cols=207 Identities=21% Similarity=0.326 Sum_probs=163.9
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc----CceEEEEecCC---CC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHD---LH 256 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~~~yv~Q~d---~~ 256 (875)
+.+|+|||+.|++||+++|+|||||||||||++|+|..+|+ +|+|.++|.++....+ ++.++|++|+. .+
T Consensus 261 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~ 337 (491)
T PRK10982 261 QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKS---AGTITLHGKKINNHNANEAINHGFALVTEERRSTGI 337 (491)
T ss_pred CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCC---ccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCc
Confidence 35999999999999999999999999999999999999986 9999999998764322 34589999985 36
Q ss_pred CCCCCHHHHHHHhh-hhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCC-cccccc
Q 002833 257 HGEMTVRETLDFSG-RCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTM 334 (875)
Q Consensus 257 ~~~lTV~EtL~f~a-~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~ 334 (875)
++++|+.+|..+.. +..... .++.+.. .....++.+++.+++. ...++.
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~--------------~~~~~~~~~l~~~~l~~~~~~~~ 388 (491)
T PRK10982 338 YAYLDIGFNSLISNIRNYKNK---------------VGLLDNS--------------RMKSDTQWVIDSMRVKTPGHRTQ 388 (491)
T ss_pred ccCCcHHHheehhhhhhhccc---------------ccccCcH--------------HHHHHHHHHHHhcCccCCCcccc
Confidence 88899888743321 000000 0000000 0112356688899995 456777
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeE
Q 002833 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (875)
Q Consensus 335 vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~v 414 (875)
+++ |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|++.|+. +++.++||++
T Consensus 389 ~~~-----LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~-~~~tvi~vsHd~-~~~~~~~d~v 461 (491)
T PRK10982 389 IGS-----LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAK-KDKGIIIISSEM-PELLGITDRI 461 (491)
T ss_pred ccc-----CCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHH-CCCEEEEECCCh-HHHHhhCCEE
Confidence 765 999999999999999999999999999999999999999999999976 488998887665 5788999999
Q ss_pred EEEeCCeEEEecChh
Q 002833 415 ILLSEGQIVYQGPRD 429 (875)
Q Consensus 415 ilL~~G~iv~~Gp~~ 429 (875)
++|++|+++..++.+
T Consensus 462 ~~l~~g~i~~~~~~~ 476 (491)
T PRK10982 462 LVMSNGLVAGIVDTK 476 (491)
T ss_pred EEEECCEEEEEEccc
Confidence 999999999877553
No 321
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-32 Score=276.35 Aligned_cols=219 Identities=23% Similarity=0.315 Sum_probs=182.8
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccC----ceEEEEecCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ----RTCAYISQHDLHHGE 259 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~----~~~~yv~Q~d~~~~~ 259 (875)
+.||++||++|++||+.+||||||||||||.++|+|.-.. ..++|+|.++|+++.+..+. .-+...+|.+.-+|.
T Consensus 17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y-~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~G 95 (251)
T COG0396 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKY-EVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPG 95 (251)
T ss_pred hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCc-eEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCC
Confidence 4799999999999999999999999999999999998532 23589999999999887652 346778999999999
Q ss_pred CCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCc-cccccccCc
Q 002833 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI-CADTMVGDE 338 (875)
Q Consensus 260 lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~~dt~vg~~ 338 (875)
.|+.+-|..+.+.+.... . . ..+ ....+++.++.++++. .++..|..
T Consensus 96 V~~~~fLr~a~n~~~~~~---------------~----~-~~~-----------~~~~~~e~~~~l~~~~~~l~R~vN~- 143 (251)
T COG0396 96 VTNSDFLRAAMNARRGAR---------------G----I-LPE-----------FIKELKEKAELLGLDEEFLERYVNE- 143 (251)
T ss_pred eeHHHHHHHHHHhhhccc---------------c----c-cHH-----------HHHHHHHHHHHcCCCHHHhhcccCC-
Confidence 999999987765321100 0 0 001 1234567888999987 67777765
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhc--CeEEE
Q 002833 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF--DDIIL 416 (875)
Q Consensus 339 ~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lf--D~vil 416 (875)
|+|||||||..|+.+++.+|++.+||||-||||..+-..+.+.+.++... +.++++.+|.. ++.++. |+|.|
T Consensus 144 ---GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~-~~~~liITHy~--rll~~i~pD~vhv 217 (251)
T COG0396 144 ---GFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREE-GRGVLIITHYQ--RLLDYIKPDKVHV 217 (251)
T ss_pred ---CcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcC-CCeEEEEecHH--HHHhhcCCCEEEE
Confidence 89999999999999999999999999999999999999999999999864 77777777654 577777 99999
Q ss_pred EeCCeEEEecChhhHHHHHHHcCCCC
Q 002833 417 LSEGQIVYQGPRDNVLEFFEHMGFKC 442 (875)
Q Consensus 417 L~~G~iv~~Gp~~~~~~~F~~~Gf~~ 442 (875)
|.+|+||..|.+ ++.++++.-||.|
T Consensus 218 l~~GrIv~sG~~-el~~~le~~gy~~ 242 (251)
T COG0396 218 LYDGRIVKSGDP-ELAEELEEKGYDW 242 (251)
T ss_pred EECCEEEecCCH-HHHHHHHHhchHH
Confidence 999999999999 8889999999976
No 322
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=7.5e-32 Score=319.64 Aligned_cols=222 Identities=22% Similarity=0.277 Sum_probs=164.8
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHH
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (875)
+++|+|+|+.|++|++++|+|||||||||||++|+|..+|+ +|+|.+++ ...++|++|++.+++++||+
T Consensus 18 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~---~G~i~~~~--------~~~i~~v~Q~~~~~~~~tv~ 86 (552)
T TIGR03719 18 KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF---NGEARPAP--------GIKVGYLPQEPQLDPTKTVR 86 (552)
T ss_pred CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecC--------CCEEEEEeccCCCCCCCcHH
Confidence 46999999999999999999999999999999999999986 99999975 24699999999899999999
Q ss_pred HHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChh-------HHHHHHHHHHhcc-hhhhHHHHHHHHhCCCccccccc
Q 002833 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE-------IDAFMKAVAVAGQ-ETSLVTDYVLKILGLDICADTMV 335 (875)
Q Consensus 264 EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~iL~~lgL~~~~dt~v 335 (875)
||+.++..... .....+.+...... .+..+ ...+.+.....+. +....++++++.+||.. .++.+
T Consensus 87 e~i~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~ 159 (552)
T TIGR03719 87 ENVEEGVAEIK-----DALDRFNEISAKFA-EPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP-WDADV 159 (552)
T ss_pred HHHHHhhHHHH-----HHHHHHHHHHHHhc-cCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-ccCch
Confidence 99988642100 00000000000000 00000 0111111111111 12235677899999964 56666
Q ss_pred cCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEE
Q 002833 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (875)
Q Consensus 336 g~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vi 415 (875)
+ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++ +.|+|++.|+ ...+..+||+++
T Consensus 160 ~-----~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~----~~tvIiisHd-~~~~~~~~d~v~ 229 (552)
T TIGR03719 160 T-----KLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY----PGTVVAVTHD-RYFLDNVAGWIL 229 (552)
T ss_pred h-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC----CCeEEEEeCC-HHHHHhhcCeEE
Confidence 5 49999999999999999999999999999999999999999999875 3477776654 557888999999
Q ss_pred EEeCCeEE-EecChhhHHH
Q 002833 416 LLSEGQIV-YQGPRDNVLE 433 (875)
Q Consensus 416 lL~~G~iv-~~Gp~~~~~~ 433 (875)
+|++|+++ +.|+.+++.+
T Consensus 230 ~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 230 ELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred EEECCEEEEecCCHHHHHH
Confidence 99999976 7898876544
No 323
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=3e-32 Score=274.02 Aligned_cols=151 Identities=27% Similarity=0.445 Sum_probs=133.1
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHH
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (875)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|. +.++|++|+..++ .+||+
T Consensus 14 ~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~--------~~i~~~~q~~~~~-~~tv~ 81 (166)
T cd03223 14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWG---SGRIGMPEG--------EDLLFLPQRPYLP-LGTLR 81 (166)
T ss_pred CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCC--------ceEEEECCCCccc-cccHH
Confidence 46999999999999999999999999999999999999986 999999873 5799999987654 67999
Q ss_pred HHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCC
Q 002833 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (875)
Q Consensus 264 EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (875)
||+.+. ..+.|
T Consensus 82 ~nl~~~---------------------------------------------------------------------~~~~L 92 (166)
T cd03223 82 EQLIYP---------------------------------------------------------------------WDDVL 92 (166)
T ss_pred HHhhcc---------------------------------------------------------------------CCCCC
Confidence 998541 01359
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCe
Q 002833 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (875)
Q Consensus 344 SGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~ 421 (875)
|||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++ +.|+|++.|++. ..+.+|++++|++|-
T Consensus 93 S~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsh~~~--~~~~~d~i~~l~~~~ 164 (166)
T cd03223 93 SGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL----GITVISVGHRPS--LWKFHDRVLDLDGEG 164 (166)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh----CCEEEEEeCChh--HHhhCCEEEEEcCCC
Confidence 999999999999999999999999999999999999999999875 578999888864 457999999998753
No 324
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-32 Score=321.37 Aligned_cols=225 Identities=19% Similarity=0.236 Sum_probs=165.0
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHH
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (875)
+++|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|. +.++|++|+...++.+||+
T Consensus 14 ~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~~~--------~~i~~~~q~~~~~~~~tv~ 82 (530)
T PRK15064 14 KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPS---AGNVSLDPN--------ERLGKLRQDQFAFEEFTVL 82 (530)
T ss_pred cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC--------CEEEEEeccCCcCCCCcHH
Confidence 46999999999999999999999999999999999999986 999999873 3589999999889999999
Q ss_pred HHHHHhhh-hcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHH-HHHhcchhhhHHHHHHHHhCCCccc-cccccCccC
Q 002833 264 ETLDFSGR-CLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKA-VAVAGQETSLVTDYVLKILGLDICA-DTMVGDEMR 340 (875)
Q Consensus 264 EtL~f~a~-~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~iL~~lgL~~~~-dt~vg~~~~ 340 (875)
|++.++.. ........ ..+.. .......+....+..... ....+.+....++.+|+.+||.+.. +..++
T Consensus 83 e~l~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---- 154 (530)
T PRK15064 83 DTVIMGHTELWEVKQER---DRIYA-LPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMS---- 154 (530)
T ss_pred HHHHHhhHHHHHHHHHH---HHHhc-ccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchh----
Confidence 99987531 00000000 00000 000000000000000000 0011112234577899999997643 34454
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCC
Q 002833 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (875)
Q Consensus 341 rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G 420 (875)
.|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|++ .+.|+|++.|+. ..+.++||+|++|++|
T Consensus 155 -~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~-~~~~~~~d~i~~l~~g 228 (530)
T PRK15064 155 -EVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE----RNSTMIIISHDR-HFLNSVCTHMADLDYG 228 (530)
T ss_pred -hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh----CCCeEEEEeCCH-HHHHhhcceEEEEeCC
Confidence 4999999999999999999999999999999999999999999874 478888877654 4778899999999999
Q ss_pred eE-EEecChhhHHH
Q 002833 421 QI-VYQGPRDNVLE 433 (875)
Q Consensus 421 ~i-v~~Gp~~~~~~ 433 (875)
++ ++.|+.++..+
T Consensus 229 ~i~~~~g~~~~~~~ 242 (530)
T PRK15064 229 ELRVYPGNYDEYMT 242 (530)
T ss_pred EEEEecCCHHHHHH
Confidence 99 58999887653
No 325
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=8e-33 Score=286.81 Aligned_cols=215 Identities=26% Similarity=0.351 Sum_probs=174.3
Q ss_pred CcccccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc--cCceEEEEe-cCCC
Q 002833 179 SKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYIS-QHDL 255 (875)
Q Consensus 179 ~~~~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~--~~~~~~yv~-Q~d~ 255 (875)
.++....+.+|+||.|+||++++++|||||||||+||+|+|++.|+ +|.|.+||...-.-. .-+.+++|+ |.-.
T Consensus 32 ~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~---~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~q 108 (325)
T COG4586 32 RKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPT---SGKVRVNGKDPFRRREEYLRSIGLVMGQKLQ 108 (325)
T ss_pred chhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccC---CCeEEecCcCcchhHHHHHHHHHHHhhhhhe
Confidence 3344566999999999999999999999999999999999999997 999999998643211 013455554 4445
Q ss_pred CCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccc
Q 002833 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335 (875)
Q Consensus 256 ~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v 335 (875)
+.-.+-+.|++.........+ + .+-.++.+.+.++|+|+...+++|
T Consensus 109 l~Wdlp~~ds~~v~~~Iy~Ip--------------------d--------------~~F~~r~~~l~eiLdl~~~lk~~v 154 (325)
T COG4586 109 LWWDLPALDSLEVLKLIYEIP--------------------D--------------DEFAERLDFLTEILDLEGFLKWPV 154 (325)
T ss_pred eeeechhhhhHHHHHHHHhCC--------------------H--------------HHHHHHHHHHHHHhcchhhhhhhh
Confidence 555566777776543322111 1 112345677889999998887776
Q ss_pred cCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEE
Q 002833 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (875)
Q Consensus 336 g~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vi 415 (875)
|.||-|||.|+.+|.+|+.+|+||||||||-|||..++..|.+.|++.++..+.||+.++| ....+..+||+|+
T Consensus 155 -----r~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH-~~~di~~lc~rv~ 228 (325)
T COG4586 155 -----RKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTH-IFDDIATLCDRVL 228 (325)
T ss_pred -----hhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEec-chhhHHHhhhheE
Confidence 5699999999999999999999999999999999999999999999999998999999875 4568999999999
Q ss_pred EEeCCeEEEecChhhHHHHHH
Q 002833 416 LLSEGQIVYQGPRDNVLEFFE 436 (875)
Q Consensus 416 lL~~G~iv~~Gp~~~~~~~F~ 436 (875)
+|+.|+++|.|+.+++.+-|.
T Consensus 229 ~I~~Gqlv~dg~l~~l~~~f~ 249 (325)
T COG4586 229 LIDQGQLVFDGTLAQLQEQFG 249 (325)
T ss_pred EeeCCcEeecccHHHHHHHhC
Confidence 999999999999999887654
No 326
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=4.6e-32 Score=271.84 Aligned_cols=146 Identities=29% Similarity=0.433 Sum_probs=125.8
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc----CceEEEEecCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (875)
+++|+|+|++++|||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|
T Consensus 13 ~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~~~~~~i~~~~q------- 82 (163)
T cd03216 13 VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD---SGEILVDGKEVSFASPRDARRAGIAMVYQ------- 82 (163)
T ss_pred eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEECCcCCHHHHHhcCeEEEEe-------
Confidence 46999999999999999999999999999999999999986 9999999987653211 011222211
Q ss_pred CCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCcc
Q 002833 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (875)
Q Consensus 260 lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (875)
T Consensus 83 -------------------------------------------------------------------------------- 82 (163)
T cd03216 83 -------------------------------------------------------------------------------- 82 (163)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeC
Q 002833 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (875)
Q Consensus 340 ~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~ 419 (875)
||||||||+++|++|+.+|++++|||||+|||..++..+.+.|+++++ .+.|+|++.|++ +++.+++|++++|++
T Consensus 83 ---LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~-~~~~~~~d~~~~l~~ 157 (163)
T cd03216 83 ---LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRA-QGVAVIFISHRL-DEVFEIADRVTVLRD 157 (163)
T ss_pred ---cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEEC
Confidence 899999999999999999999999999999999999999999999975 478888887664 467788999999999
Q ss_pred CeEEE
Q 002833 420 GQIVY 424 (875)
Q Consensus 420 G~iv~ 424 (875)
|++++
T Consensus 158 g~i~~ 162 (163)
T cd03216 158 GRVVG 162 (163)
T ss_pred CEEEe
Confidence 99975
No 327
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-32 Score=320.67 Aligned_cols=200 Identities=22% Similarity=0.318 Sum_probs=163.3
Q ss_pred hhhccccCCcccccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEE
Q 002833 171 LGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYI 250 (875)
Q Consensus 171 l~~~~~~~~~~~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv 250 (875)
+++.++...+. ++.+|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|. +.++|+
T Consensus 320 l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~--------~~i~~~ 387 (530)
T PRK15064 320 LEVENLTKGFD-NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPD---SGTVKWSEN--------ANIGYY 387 (530)
T ss_pred EEEEeeEEeeC-CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCc--------eEEEEE
Confidence 44445544443 356999999999999999999999999999999999999986 999999873 469999
Q ss_pred ecCCC--CCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCC
Q 002833 251 SQHDL--HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD 328 (875)
Q Consensus 251 ~Q~d~--~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~ 328 (875)
+|+.. +++.+||+|++.+... .. .....++.+|+.+|+.
T Consensus 388 ~q~~~~~~~~~~t~~~~~~~~~~---~~------------------------------------~~~~~~~~~l~~~~l~ 428 (530)
T PRK15064 388 AQDHAYDFENDLTLFDWMSQWRQ---EG------------------------------------DDEQAVRGTLGRLLFS 428 (530)
T ss_pred cccccccCCCCCcHHHHHHHhcc---CC------------------------------------ccHHHHHHHHHHcCCC
Confidence 99863 4567999999864210 00 0012346688999994
Q ss_pred -ccccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhH
Q 002833 329 -ICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPET 407 (875)
Q Consensus 329 -~~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei 407 (875)
+..+..+++ |||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++ +.|+|+++|++ .++
T Consensus 429 ~~~~~~~~~~-----LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~-~~~ 498 (530)
T PRK15064 429 QDDIKKSVKV-----LSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY----EGTLIFVSHDR-EFV 498 (530)
T ss_pred hhHhcCcccc-----cCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC----CCEEEEEeCCH-HHH
Confidence 667777765 9999999999999999999999999999999999999999999875 35888877654 578
Q ss_pred HhhcCeEEEEeCCeEE-EecChhhH
Q 002833 408 YDLFDDIILLSEGQIV-YQGPRDNV 431 (875)
Q Consensus 408 ~~lfD~vilL~~G~iv-~~Gp~~~~ 431 (875)
.++||++++|++|+++ +.|+.+++
T Consensus 499 ~~~~d~i~~l~~g~i~~~~g~~~~~ 523 (530)
T PRK15064 499 SSLATRIIEITPDGVVDFSGTYEEY 523 (530)
T ss_pred HHhCCEEEEEECCeEEEcCCCHHHH
Confidence 8899999999999998 88887765
No 328
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.98 E-value=1.2e-31 Score=346.87 Aligned_cols=205 Identities=24% Similarity=0.252 Sum_probs=168.3
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (875)
..+|+|||++|+|||.++|+|++|||||||+++|.|+++ . +|+|.+||.++..... ++.++||+|++.+|+.
T Consensus 1232 ~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~---~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~G- 1306 (1490)
T TIGR01271 1232 RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-T---EGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSG- 1306 (1490)
T ss_pred cceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C---CcEEEECCEEcccCCHHHHHhceEEEeCCCccCcc-
Confidence 469999999999999999999999999999999999986 3 8999999999987653 5789999999999975
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccC
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (875)
||||||+.... .+.+++++++...+.. +.+ -.+++..||.||+ ..
T Consensus 1307 TIR~NLdp~~~--------------------------~tdeei~~aL~~~~L~------~~i--~~lp~GLdt~v~e-~G 1351 (1490)
T TIGR01271 1307 TFRKNLDPYEQ--------------------------WSDEEIWKVAEEVGLK------SVI--EQFPDKLDFVLVD-GG 1351 (1490)
T ss_pred CHHHHhCcccC--------------------------CCHHHHHHHHHHCCCH------HHH--HhCcccccccccc-CC
Confidence 99999964211 0112223333222211 111 2345678999986 45
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCC
Q 002833 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (875)
Q Consensus 341 rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G 420 (875)
..||||||||++|||||+.+|+||+|||||++||..|...|.+.|++.. .++|+|++.|.+ ++...||+|++|++|
T Consensus 1352 ~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~--~~~TvI~IaHRl--~ti~~~DrIlvL~~G 1427 (1490)
T TIGR01271 1352 YVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF--SNCTVILSEHRV--EALLECQQFLVIEGS 1427 (1490)
T ss_pred CcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCH--HHHHhCCEEEEEECC
Confidence 5699999999999999999999999999999999999999999999875 378999888875 466779999999999
Q ss_pred eEEEecChhhHH
Q 002833 421 QIVYQGPRDNVL 432 (875)
Q Consensus 421 ~iv~~Gp~~~~~ 432 (875)
+|+..|++++++
T Consensus 1428 ~ivE~g~p~~Ll 1439 (1490)
T TIGR01271 1428 SVKQYDSIQKLL 1439 (1490)
T ss_pred EEEEeCCHHHHH
Confidence 999999999886
No 329
>PRK13409 putative ATPase RIL; Provisional
Probab=99.98 E-value=5.1e-32 Score=321.36 Aligned_cols=184 Identities=26% Similarity=0.299 Sum_probs=158.2
Q ss_pred cccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHHHH
Q 002833 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRET 265 (875)
Q Consensus 186 IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~Et 265 (875)
.|+++|+.|++||+++|+|||||||||||++|+|.++|+ +|+|.++ ..++|++|+..+.+++||+|+
T Consensus 354 ~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~---~G~I~~~----------~~i~y~~Q~~~~~~~~tv~e~ 420 (590)
T PRK13409 354 SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPD---EGEVDPE----------LKISYKPQYIKPDYDGTVEDL 420 (590)
T ss_pred EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEEe----------eeEEEecccccCCCCCcHHHH
Confidence 589999999999999999999999999999999999986 9999986 148999999888899999999
Q ss_pred HHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCCCH
Q 002833 266 LDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISG 345 (875)
Q Consensus 266 L~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSG 345 (875)
+.+...... ....++++|+.+||.+..|+.+++ |||
T Consensus 421 l~~~~~~~~---------------------------------------~~~~~~~~L~~l~l~~~~~~~~~~-----LSG 456 (590)
T PRK13409 421 LRSITDDLG---------------------------------------SSYYKSEIIKPLQLERLLDKNVKD-----LSG 456 (590)
T ss_pred HHHHhhhcC---------------------------------------hHHHHHHHHHHCCCHHHHhCCccc-----CCH
Confidence 987421000 001235688999999888888775 999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCeEEEe
Q 002833 346 GQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQ 425 (875)
Q Consensus 346 GerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~iv~~ 425 (875)
||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++..++|++++|+ |++..+
T Consensus 457 Ge~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~-~~~~~~aDrvivl~-~~~~~~ 534 (590)
T PRK13409 457 GELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDI-YMIDYISDRLMVFE-GEPGKH 534 (590)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEc-Ccceee
Confidence 9999999999999999999999999999999999999999999876688998887654 57788999999995 588777
Q ss_pred cCh
Q 002833 426 GPR 428 (875)
Q Consensus 426 Gp~ 428 (875)
|..
T Consensus 535 g~~ 537 (590)
T PRK13409 535 GHA 537 (590)
T ss_pred eec
Confidence 664
No 330
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.98 E-value=3e-32 Score=270.02 Aligned_cols=213 Identities=27% Similarity=0.393 Sum_probs=179.3
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECC-EeCCCCcc----CceEEEEecCCCCC
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCG-HELNEFVP----QRTCAYISQHDLHH 257 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG-~~~~~~~~----~~~~~yv~Q~d~~~ 257 (875)
...+|+|+|+++.|||+-+|+|||||||||+|++|+|+.+|. +|+|.++| .++..... +.-||--+|.+..|
T Consensus 17 GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~---~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVf 93 (249)
T COG4674 17 GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQ---EGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVF 93 (249)
T ss_pred ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCC---cceEEEcCchhhccCCHHHHHHhccCccccCCeeh
Confidence 356999999999999999999999999999999999999996 99999999 77765432 34578889999999
Q ss_pred CCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccC
Q 002833 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (875)
Q Consensus 258 ~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (875)
..+||+|||+.+.+.... .+..+..+- ..+.+.+++++|...||.+.+|..-+.
T Consensus 94 e~ltV~eNLelA~~~~k~-----v~a~L~~r~---------------------~~~e~~ride~La~igL~~~~~~~A~~ 147 (249)
T COG4674 94 ENLTVRENLELALNRDKS-----VFASLFARL---------------------RAEERRRIDELLATIGLGDERDRLAAL 147 (249)
T ss_pred hhccHHHHHHHHhcCCcc-----hHHHhhhhc---------------------ChhHHHHHHHHHHHcccchhhhhhhhh
Confidence 999999999998653211 122221111 112344689999999999999988876
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEE
Q 002833 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (875)
Q Consensus 338 ~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL 417 (875)
||.||||++.||..++.+|++|++|||++|+-...+.+..++|+.++. +.++++ +-|+..-+-+++|+|.||
T Consensus 148 -----LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~--~hsilV-VEHDM~Fvr~~A~~VTVl 219 (249)
T COG4674 148 -----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG--KHSILV-VEHDMGFVREIADKVTVL 219 (249)
T ss_pred -----hccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc--CceEEE-EeccHHHHHHhhheeEEE
Confidence 999999999999999999999999999999999999999999999985 344444 467788888999999999
Q ss_pred eCCeEEEecChhhHH
Q 002833 418 SEGQIVYQGPRDNVL 432 (875)
Q Consensus 418 ~~G~iv~~Gp~~~~~ 432 (875)
++|++...|+.+++.
T Consensus 220 h~G~VL~EGsld~v~ 234 (249)
T COG4674 220 HEGSVLAEGSLDEVQ 234 (249)
T ss_pred eccceeecccHHHhh
Confidence 999999999998874
No 331
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.98 E-value=9.5e-32 Score=299.20 Aligned_cols=212 Identities=26% Similarity=0.293 Sum_probs=179.1
Q ss_pred ccccCCcccccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc----CceEEE
Q 002833 174 LHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAY 249 (875)
Q Consensus 174 ~~~~~~~~~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~~~y 249 (875)
.++.+.+. ...+++|||++|++||+.+|+|.||||||||+++|.|.++|+ +|+|.++|+++.-..| +.-||+
T Consensus 8 ~~itK~f~-~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~---~GeI~v~G~~v~~~sP~dA~~~GIGM 83 (501)
T COG3845 8 RGITKRFP-GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVRIKSPRDAIRLGIGM 83 (501)
T ss_pred eccEEEcC-CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC---cceEEECCEEeccCCHHHHHHcCCcE
Confidence 34444343 677999999999999999999999999999999999999998 9999999999865444 245899
Q ss_pred EecCCCCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCc
Q 002833 250 ISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI 329 (875)
Q Consensus 250 v~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~ 329 (875)
|+|+..+++++||.||+..+..-.... + +.++ +....++++.+.+||+-
T Consensus 84 VhQHF~Lv~~lTV~ENiiLg~e~~~~~-~------~~~~------------------------~~~~~i~~l~~~yGl~v 132 (501)
T COG3845 84 VHQHFMLVPTLTVAENIILGLEPSKGG-L------IDRR------------------------QARARIKELSERYGLPV 132 (501)
T ss_pred EeeccccccccchhhhhhhcCcccccc-c------cCHH------------------------HHHHHHHHHHHHhCCCC
Confidence 999999999999999999886431100 0 0011 12335677899999999
Q ss_pred cccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHh
Q 002833 330 CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD 409 (875)
Q Consensus 330 ~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~ 409 (875)
-.|.+|++ ||-||||||.|-++|..+|++|+|||||+-|-|....++.+.|+++++ .|+|||+.+| -..|+.+
T Consensus 133 dp~~~V~d-----LsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~-~G~tIi~ITH-KL~Ev~~ 205 (501)
T COG3845 133 DPDAKVAD-----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAA-EGKTIIFITH-KLKEVMA 205 (501)
T ss_pred Cccceeec-----CCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEec-cHHHHHH
Confidence 99999987 999999999999999999999999999999999999999999999987 5999998764 5679999
Q ss_pred hcCeEEEEeCCeEEEecC
Q 002833 410 LFDDIILLSEGQIVYQGP 427 (875)
Q Consensus 410 lfD~vilL~~G~iv~~Gp 427 (875)
+||++.||..|+++-..+
T Consensus 206 iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 206 IADRVTVLRRGKVVGTVD 223 (501)
T ss_pred hhCeeEEEeCCeEEeeec
Confidence 999999999999875543
No 332
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.98 E-value=6.7e-32 Score=315.83 Aligned_cols=217 Identities=21% Similarity=0.238 Sum_probs=163.3
Q ss_pred HhhhccccCCcccccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCC----ccCc
Q 002833 170 ALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF----VPQR 245 (875)
Q Consensus 170 ~l~~~~~~~~~~~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~----~~~~ 245 (875)
++++.++...+. ++.+|+|+|+.|++||+++|+|||||||||||++|+|..++. .+|+|+++|++.... ..++
T Consensus 260 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~--~~G~i~~~g~~~~~~~~~~~~~~ 336 (490)
T PRK10938 260 RIVLNNGVVSYN-DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQG--YSNDLTLFGRRRGSGETIWDIKK 336 (490)
T ss_pred eEEEeceEEEEC-CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcc--cCCeEEEecccCCCCCCHHHHHh
Confidence 345555544443 356999999999999999999999999999999999987541 289999999875321 1235
Q ss_pred eEEEEecCCCCCC--CCCHHHHHHHhhhhc-CCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHH
Q 002833 246 TCAYISQHDLHHG--EMTVRETLDFSGRCL-GVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 322 (875)
Q Consensus 246 ~~~yv~Q~d~~~~--~lTV~EtL~f~a~~~-~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL 322 (875)
.++|++|++.+++ ..|+++++.++.... +.... ... +....+++++
T Consensus 337 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~--------------~~~~~~~~~l 385 (490)
T PRK10938 337 HIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQA-----------------VSD--------------RQQKLAQQWL 385 (490)
T ss_pred hceEECHHHHhhcccCCcHHHHHHhccccccccccC-----------------CCH--------------HHHHHHHHHH
Confidence 6999999865543 357777765432100 00000 000 0112356789
Q ss_pred HHhCCCc-cccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeec
Q 002833 323 KILGLDI-CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL 401 (875)
Q Consensus 323 ~~lgL~~-~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~ 401 (875)
+.+||.+ ..++.+++ |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|
T Consensus 386 ~~~~l~~~~~~~~~~~-----LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsH 460 (490)
T PRK10938 386 DILGIDKRTADAPFHS-----LSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSH 460 (490)
T ss_pred HHcCCchhhccCchhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Confidence 9999987 77877765 99999999999999999999999999999999999999999999998753346777766
Q ss_pred CCchhHHh-hcCeEEEEeCCeEEEec
Q 002833 402 QPAPETYD-LFDDIILLSEGQIVYQG 426 (875)
Q Consensus 402 q~~~ei~~-lfD~vilL~~G~iv~~G 426 (875)
++ .++.+ ++|++++|++|++++.-
T Consensus 461 d~-~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 461 HA-EDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred ch-hhhhhhhheeEEEecCCceEEee
Confidence 64 46666 58999999999988653
No 333
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.97 E-value=1.3e-31 Score=317.73 Aligned_cols=192 Identities=18% Similarity=0.171 Sum_probs=152.0
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (875)
+++|+|+|+++++|+.++|+||||||||||+++|+|.++|+ +|+|.+||.++.+... ++.++||+|++.+|..
T Consensus 355 ~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~- 430 (555)
T TIGR01194 355 GFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ---EGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDD- 430 (555)
T ss_pred CceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhhCcEEccChhhhhh-
Confidence 35999999999999999999999999999999999999997 9999999999876543 4679999998777754
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccc-cCcc
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV-GDEM 339 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v-g~~~ 339 (875)
|+++|+. + +.+. ..++++++.+++.+..+... |.+.
T Consensus 431 ti~~n~~-------~---------------------~~~~---------------~~~~~~~~~~~l~~~~~~lp~g~~t 467 (555)
T TIGR01194 431 LIGPDEG-------E---------------------HASL---------------DNAQQYLQRLEIADKVKIEDGGFST 467 (555)
T ss_pred hhhcccc-------c---------------------chhH---------------HHHHHHHHHcCCchhhcccccccCC
Confidence 7887731 0 0000 11234556666654332221 1122
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHH-HHHHhCCcEEEEeecCCchhHHhhcCeEEEEe
Q 002833 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLK-QMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (875)
Q Consensus 340 ~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~-~l~~~~~~tviisi~q~~~ei~~lfD~vilL~ 418 (875)
...||||||||++|||+|+.+|++|+|||||++||+.++..+.+.+. .+.. .++|+|++.|++ ++.+.||+|++|+
T Consensus 468 ~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~-~~~tiiiisH~~--~~~~~~d~i~~l~ 544 (555)
T TIGR01194 468 TTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKR-QGKTIIIISHDD--QYFELADQIIKLA 544 (555)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh-CCCEEEEEeccH--HHHHhCCEEEEEE
Confidence 35699999999999999999999999999999999999999998764 4433 478999988876 4678999999999
Q ss_pred CCeEEEe
Q 002833 419 EGQIVYQ 425 (875)
Q Consensus 419 ~G~iv~~ 425 (875)
+|+++..
T Consensus 545 ~G~i~~~ 551 (555)
T TIGR01194 545 AGCIVKD 551 (555)
T ss_pred CCEEEEe
Confidence 9999854
No 334
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=1.4e-31 Score=287.03 Aligned_cols=191 Identities=23% Similarity=0.272 Sum_probs=154.8
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEE-----------ECCEeCCCCcc-----CceE
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKIT-----------YCGHELNEFVP-----QRTC 247 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~-----------~nG~~~~~~~~-----~~~~ 247 (875)
..+|+|+| .+++|++++|+||||||||||||+|+|+++|+ +|+|. ++|+++..... ...+
T Consensus 14 ~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~---~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i 89 (255)
T cd03236 14 SFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPN---LGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKV 89 (255)
T ss_pred chhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEeeccccchhhhhccCchhhhhhHHhhhcccce
Confidence 46999999 59999999999999999999999999999997 99996 78887643211 1236
Q ss_pred EEEecCCCCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCC
Q 002833 248 AYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGL 327 (875)
Q Consensus 248 ~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL 327 (875)
+|++|+...++. ++.+++.+.... . +....+.++++.+||
T Consensus 90 ~~~~~~~~~~~~-~~~~~i~~~l~~---------------~------------------------~~~~~~~~~l~~~gl 129 (255)
T cd03236 90 IVKPQYVDLIPK-AVKGKVGELLKK---------------K------------------------DERGKLDELVDQLEL 129 (255)
T ss_pred eeecchhccCch-HHHHHHHHHhch---------------h------------------------HHHHHHHHHHHHcCC
Confidence 899998777774 888888653210 0 001234668899999
Q ss_pred CccccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhH
Q 002833 328 DICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPET 407 (875)
Q Consensus 328 ~~~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei 407 (875)
++..+..++ .|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++++ .+.|+|++.|++ .++
T Consensus 130 ~~~~~~~~~-----~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-~~~tIIiiSHd~-~~~ 202 (255)
T cd03236 130 RHVLDRNID-----QLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAE-DDNYVLVVEHDL-AVL 202 (255)
T ss_pred chhhcCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEECCH-HHH
Confidence 887776665 4999999999999999999999999999999999999999999999976 478888877664 577
Q ss_pred HhhcCeEEEEeCCeEEEec
Q 002833 408 YDLFDDIILLSEGQIVYQG 426 (875)
Q Consensus 408 ~~lfD~vilL~~G~iv~~G 426 (875)
.++||+|++| +|+++++|
T Consensus 203 ~~~ad~i~~l-~~~~~~~~ 220 (255)
T cd03236 203 DYLSDYIHCL-YGEPGAYG 220 (255)
T ss_pred HHhCCEEEEE-CCCCCcce
Confidence 7899999999 56676554
No 335
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.97 E-value=2.8e-31 Score=314.84 Aligned_cols=202 Identities=23% Similarity=0.273 Sum_probs=160.1
Q ss_pred hhhccccCCcccccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEE
Q 002833 171 LGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYI 250 (875)
Q Consensus 171 l~~~~~~~~~~~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv 250 (875)
+.+.++...+ +++.+|+|||+.|++||+++|+|||||||||||++|+|.++|+ +|+|.+++. ..++|+
T Consensus 325 l~~~~l~~~~-~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~--------~~i~~v 392 (556)
T PRK11819 325 IEAENLSKSF-GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPD---SGTIKIGET--------VKLAYV 392 (556)
T ss_pred EEEEeEEEEE-CCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCc--------eEEEEE
Confidence 3444444333 2356999999999999999999999999999999999999986 999999542 158999
Q ss_pred ecCC-CCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCc
Q 002833 251 SQHD-LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI 329 (875)
Q Consensus 251 ~Q~d-~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~ 329 (875)
+|+. .+++.+||+|++.+.....+... . ......+++.+||.+
T Consensus 393 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~---------------------~---------------~~~~~~~l~~~~l~~ 436 (556)
T PRK11819 393 DQSRDALDPNKTVWEEISGGLDIIKVGN---------------------R---------------EIPSRAYVGRFNFKG 436 (556)
T ss_pred eCchhhcCCCCCHHHHHHhhcccccccc---------------------c---------------HHHHHHHHHhCCCCh
Confidence 9986 67889999999988643211100 0 001234788999964
Q ss_pred -cccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHH
Q 002833 330 -CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETY 408 (875)
Q Consensus 330 -~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~ 408 (875)
..+..+++ |||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++. .|+|++.|+ ..++.
T Consensus 437 ~~~~~~~~~-----LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~tvi~vtHd-~~~~~ 506 (556)
T PRK11819 437 GDQQKKVGV-----LSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP----GCAVVISHD-RWFLD 506 (556)
T ss_pred hHhcCchhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC----CeEEEEECC-HHHHH
Confidence 56777664 99999999999999999999999999999999999999999999862 377776554 55788
Q ss_pred hhcCeEEEEeC-CeEE-EecChhh
Q 002833 409 DLFDDIILLSE-GQIV-YQGPRDN 430 (875)
Q Consensus 409 ~lfD~vilL~~-G~iv-~~Gp~~~ 430 (875)
++||+|++|++ |+++ +.|+.++
T Consensus 507 ~~~d~i~~l~~~g~~~~~~g~~~~ 530 (556)
T PRK11819 507 RIATHILAFEGDSQVEWFEGNFQE 530 (556)
T ss_pred HhCCEEEEEECCCeEEEecCCHHH
Confidence 89999999986 7876 5676543
No 336
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.3e-31 Score=275.99 Aligned_cols=209 Identities=28% Similarity=0.402 Sum_probs=166.0
Q ss_pred cccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCC----CccCceEEEEecC--CC
Q 002833 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE----FVPQRTCAYISQH--DL 255 (875)
Q Consensus 182 ~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~----~~~~~~~~yv~Q~--d~ 255 (875)
++++||+|+|++|+|||-.+|+|||||||||||++|+|..+|+ +|.+.+.|+.... +..++.||||+-. ..
T Consensus 42 ~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps---sg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~ 118 (257)
T COG1119 42 NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS---SGDVTLLGRRFGKGETIFELRKRIGLVSSELHER 118 (257)
T ss_pred CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC---CCceeeeeeeccCCcchHHHHHHhCccCHHHHhh
Confidence 3567999999999999999999999999999999999999986 9999999998743 2336889999743 33
Q ss_pred CCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccc
Q 002833 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335 (875)
Q Consensus 256 ~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v 335 (875)
+.+..+|+|-+.-+ .....+..+ .+.+. +....+..+|+.+|+.+.+|...
T Consensus 119 ~~~~~~v~dvVlSg-~~~siG~y~----------------~~~~~------------~~~~~a~~lle~~g~~~la~r~~ 169 (257)
T COG1119 119 FRVRETVRDVVLSG-FFASIGIYQ----------------EDLTA------------EDLAAAQWLLELLGAKHLADRPF 169 (257)
T ss_pred cccccccceeeeec-ccccccccc----------------cCCCH------------HHHHHHHHHHHHcchhhhccCch
Confidence 44566788766433 222221100 01111 11234577899999999999888
Q ss_pred cCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEE
Q 002833 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (875)
Q Consensus 336 g~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vi 415 (875)
+. ||-||||||-|||||+.+|.+|+||||++|||...+.++++.|.+++...+.+.++.+.|+.+|+-..|++++
T Consensus 170 ~~-----LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~l 244 (257)
T COG1119 170 GS-----LSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRL 244 (257)
T ss_pred hh-----cCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEE
Confidence 76 9999999999999999999999999999999999999999999999874444444444455679999999999
Q ss_pred EEeCCeEEEecC
Q 002833 416 LLSEGQIVYQGP 427 (875)
Q Consensus 416 lL~~G~iv~~Gp 427 (875)
+|++|+++++|-
T Consensus 245 ll~~g~v~~~g~ 256 (257)
T COG1119 245 LLKEGEVVAQGK 256 (257)
T ss_pred EeeCCceeeccc
Confidence 999999999884
No 337
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=2.2e-31 Score=267.77 Aligned_cols=208 Identities=25% Similarity=0.345 Sum_probs=170.4
Q ss_pred ccccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccC---ceEEEEecCC--C
Q 002833 181 KRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ---RTCAYISQHD--L 255 (875)
Q Consensus 181 ~~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~---~~~~yv~Q~d--~ 255 (875)
...++||+++|+.|..|+++-|+|.|||||||||++|+|.+.++ +|+|.++|.+++..... ..++-|+|++ .
T Consensus 16 ~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t---~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~g 92 (263)
T COG1101 16 PLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPT---SGQILIDGVDVTKKSVAKRANLLARVFQDPLAG 92 (263)
T ss_pred hhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccC---CceEEECceecccCCHHHHhhHHHHHhcchhhC
Confidence 34678999999999999999999999999999999999999997 99999999999887653 3467789996 4
Q ss_pred CCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHH--hCCCccccc
Q 002833 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKI--LGLDICADT 333 (875)
Q Consensus 256 ~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~--lgL~~~~dt 333 (875)
.+|+|||.||+..+. ++|...- +...+..+.+ +.+ .+-++. +||++..++
T Consensus 93 t~~~lTieENl~la~-~Rg~~rg--l~~~ln~~~~----------~~f---------------~~~l~~l~lgLenrL~~ 144 (263)
T COG1101 93 TAPELTIEENLALAE-SRGKKRG--LSSALNERRR----------SSF---------------RERLARLGLGLENRLSD 144 (263)
T ss_pred CcccccHHHHHHHHH-hcCcccc--cchhhhHHHH----------HHH---------------HHHHhhcccchhhhhcC
Confidence 689999999999874 3332110 0011111000 001 112333 578899999
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCe
Q 002833 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (875)
Q Consensus 334 ~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~ 413 (875)
.+|- |||||||-|+++.|.+.+|+||||||-|++|||.++..+++.-.++..+.+.|.++.+| ......++.+|
T Consensus 145 ~igl-----LSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTH-nm~~Al~yG~R 218 (263)
T COG1101 145 RIGL-----LSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTH-NMEDALDYGNR 218 (263)
T ss_pred hhhh-----ccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEec-cHHHHHhhCCe
Confidence 9986 99999999999999999999999999999999999999999999999988999999765 56788999999
Q ss_pred EEEEeCCeEEEe
Q 002833 414 IILLSEGQIVYQ 425 (875)
Q Consensus 414 vilL~~G~iv~~ 425 (875)
.|+|++|+||.+
T Consensus 219 lImLh~G~IvlD 230 (263)
T COG1101 219 LIMLHSGKIVLD 230 (263)
T ss_pred EEEEeCCeEEEE
Confidence 999999999976
No 338
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.97 E-value=4.2e-31 Score=313.23 Aligned_cols=202 Identities=22% Similarity=0.276 Sum_probs=159.6
Q ss_pred hhhccccCCcccccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEE
Q 002833 171 LGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYI 250 (875)
Q Consensus 171 l~~~~~~~~~~~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv 250 (875)
+.+.++...+ +++.+|+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.+++. ..++|+
T Consensus 323 l~~~~l~~~~-~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~~~--------~~i~~v 390 (552)
T TIGR03719 323 IEAENLSKGF-GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPD---SGTIKIGET--------VKLAYV 390 (552)
T ss_pred EEEeeEEEEE-CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CeEEEECCc--------eEEEEE
Confidence 3344443333 2357999999999999999999999999999999999999886 999999542 158999
Q ss_pred ecCC-CCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCc
Q 002833 251 SQHD-LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI 329 (875)
Q Consensus 251 ~Q~d-~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~ 329 (875)
+|+. .+++.+||.|++.++....+... .......+++.+||.+
T Consensus 391 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~------------------------------------~~~~~~~~l~~~~l~~ 434 (552)
T TIGR03719 391 DQSRDALDPNKTVWEEISGGLDIIQLGK------------------------------------REVPSRAYVGRFNFKG 434 (552)
T ss_pred eCCccccCCCCcHHHHHHhhccccccCc------------------------------------chHHHHHHHHhCCCCh
Confidence 9986 47888999999988643211100 0001235788999964
Q ss_pred -cccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHH
Q 002833 330 -CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETY 408 (875)
Q Consensus 330 -~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~ 408 (875)
..+..++. |||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++. .|+|++.|+ ...+.
T Consensus 435 ~~~~~~~~~-----LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~~viivsHd-~~~~~ 504 (552)
T TIGR03719 435 SDQQKKVGQ-----LSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA----GCAVVISHD-RWFLD 504 (552)
T ss_pred hHhcCchhh-----CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC----CeEEEEeCC-HHHHH
Confidence 56777664 99999999999999999999999999999999999999999999872 377776655 55788
Q ss_pred hhcCeEEEEeC-CeEE-EecChhh
Q 002833 409 DLFDDIILLSE-GQIV-YQGPRDN 430 (875)
Q Consensus 409 ~lfD~vilL~~-G~iv-~~Gp~~~ 430 (875)
++||+|++|++ |+++ +.|+.++
T Consensus 505 ~~~d~i~~l~~~~~~~~~~g~~~~ 528 (552)
T TIGR03719 505 RIATHILAFEGDSHVEWFEGNYSE 528 (552)
T ss_pred HhCCEEEEEECCCeEEEeCCCHHH
Confidence 89999999987 5876 5666543
No 339
>PLN03232 ABC transporter C family member; Provisional
Probab=99.97 E-value=1.8e-30 Score=336.47 Aligned_cols=197 Identities=25% Similarity=0.314 Sum_probs=158.5
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHH
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (875)
+++|+|+|+.|++|+.++|+||+|||||||+++|.|.++|. +|.+. ..++.++||+|++.++. .||+
T Consensus 630 ~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~---~G~i~---------~~~~~Iayv~Q~p~Lf~-gTIr 696 (1495)
T PLN03232 630 KPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHA---ETSSV---------VIRGSVAYVPQVSWIFN-ATVR 696 (1495)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCccc---CCCEE---------EecCcEEEEcCcccccc-ccHH
Confidence 46999999999999999999999999999999999999986 77653 12567999999988886 4999
Q ss_pred HHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCC
Q 002833 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (875)
Q Consensus 264 EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (875)
|||.|+.... +.+.++.+++++ .+ + +.-.|++..+|.||+. ...|
T Consensus 697 eNI~fg~~~~-----------------------~e~~~~vl~~~~---L~-----~---di~~Lp~Gd~T~IGe~-G~~L 741 (1495)
T PLN03232 697 ENILFGSDFE-----------------------SERYWRAIDVTA---LQ-----H---DLDLLPGRDLTEIGER-GVNI 741 (1495)
T ss_pred HHhhcCCccC-----------------------HHHHHHHHHHhC---CH-----H---HHHhCCCCCCceecCC-Cccc
Confidence 9999973210 011122222221 11 1 1235778889999975 4469
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHH-HHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCeE
Q 002833 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKF-LKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (875)
Q Consensus 344 SGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~-L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~i 422 (875)
|||||||++||||+..+|+|++||||||+||+.++.+|++. ++... .++|+|++.|++. ....+|+|++|++|++
T Consensus 742 SGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l--~~kT~IlvTH~~~--~l~~aD~Ii~L~~G~i 817 (1495)
T PLN03232 742 SGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL--KGKTRVLVTNQLH--FLPLMDRIILVSEGMI 817 (1495)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh--cCCEEEEEECChh--hHHhCCEEEEEeCCEE
Confidence 99999999999999999999999999999999999999764 55543 4789999988874 5788999999999999
Q ss_pred EEecChhhHH
Q 002833 423 VYQGPRDNVL 432 (875)
Q Consensus 423 v~~Gp~~~~~ 432 (875)
+++|+.+++.
T Consensus 818 ~~~Gt~~eL~ 827 (1495)
T PLN03232 818 KEEGTFAELS 827 (1495)
T ss_pred EEecCHHHHH
Confidence 9999998875
No 340
>PLN03130 ABC transporter C family member; Provisional
Probab=99.97 E-value=2.6e-30 Score=335.44 Aligned_cols=196 Identities=26% Similarity=0.348 Sum_probs=160.0
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCc-cEEEECCEeCCCCccCceEEEEecCCCCCCCCCH
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRAS-GKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~s-G~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 262 (875)
+++|+|+|+.|++|+.++|+||+||||||||++|.|.+++. + |+|.+ ++.++||+|++.++. .||
T Consensus 630 ~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~---~GG~I~l----------~~~Iayv~Q~p~Lfn-gTI 695 (1622)
T PLN03130 630 RPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPR---SDASVVI----------RGTVAYVPQVSWIFN-ATV 695 (1622)
T ss_pred CceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccC---CCceEEE----------cCeEEEEcCccccCC-CCH
Confidence 45899999999999999999999999999999999999986 8 89985 346999999988876 599
Q ss_pred HHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCC
Q 002833 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (875)
Q Consensus 263 ~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (875)
||||.|+... +.+.+.+++...+. +. ..-.|++..+|.||+. ...
T Consensus 696 reNI~fg~~~--------------------------d~e~y~~vl~a~~L------~~--di~~LP~Gd~T~IGe~-G~~ 740 (1622)
T PLN03130 696 RDNILFGSPF--------------------------DPERYERAIDVTAL------QH--DLDLLPGGDLTEIGER-GVN 740 (1622)
T ss_pred HHHHhCCCcc--------------------------cHHHHHHHHHHhCc------HH--HHHhCCCcccccccCC-CCC
Confidence 9999997321 01112222221111 11 1235677889999975 456
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHH-HHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCe
Q 002833 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQIC-KFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (875)
Q Consensus 343 LSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~-~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~ 421 (875)
|||||||||+||||+..+|+|++||||||+||+.++.+|. ++++... .++|+|++.|++ +....+|+|++|++|+
T Consensus 741 LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l--~~kTvIlVTH~l--~~l~~aD~Ii~L~~G~ 816 (1622)
T PLN03130 741 ISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL--RGKTRVLVTNQL--HFLSQVDRIILVHEGM 816 (1622)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh--cCCEEEEEECCH--hHHHhCCEEEEEeCCE
Confidence 9999999999999999999999999999999999999886 4666553 478999999987 4678899999999999
Q ss_pred EEEecChhhHH
Q 002833 422 IVYQGPRDNVL 432 (875)
Q Consensus 422 iv~~Gp~~~~~ 432 (875)
++++|+.+++.
T Consensus 817 i~e~Gt~~eL~ 827 (1622)
T PLN03130 817 IKEEGTYEELS 827 (1622)
T ss_pred EEEeCCHHHHH
Confidence 99999999875
No 341
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=1.1e-30 Score=274.49 Aligned_cols=172 Identities=27% Similarity=0.353 Sum_probs=150.0
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHH
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (875)
..+++||||.|++||.++|+|.||||||||-++|.|+.+|+ +|+|.++|+++..+. +
T Consensus 26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt---~G~i~f~g~~i~~~~--------------------~ 82 (268)
T COG4608 26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPT---SGEILFEGKDITKLS--------------------K 82 (268)
T ss_pred eEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCC---CceEEEcCcchhhcc--------------------h
Confidence 57999999999999999999999999999999999999997 999999999866542 0
Q ss_pred HHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCc-cccccccCccCCC
Q 002833 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI-CADTMVGDEMRRG 342 (875)
Q Consensus 264 EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~~dt~vg~~~~rg 342 (875)
+ +....+.++|+.+||.. .++ .+.+.
T Consensus 83 ~------------------------------------------------~~~~~v~elL~~Vgl~~~~~~-----ryPhe 109 (268)
T COG4608 83 E------------------------------------------------ERRERVLELLEKVGLPEEFLY-----RYPHE 109 (268)
T ss_pred h------------------------------------------------HHHHHHHHHHHHhCCCHHHhh-----cCCcc
Confidence 0 00123567888899754 344 44567
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCeE
Q 002833 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (875)
Q Consensus 343 LSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~i 422 (875)
+|||||||+.|||||+.+|+++++|||+|.||.+.+.+|+++|+++.++.+.|.+...|+ ...+..++|+|.+|+.|+|
T Consensus 110 lSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHD-L~vv~~isdri~VMy~G~i 188 (268)
T COG4608 110 LSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHD-LSVVRYISDRIAVMYLGKI 188 (268)
T ss_pred cCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEE-HHhhhhhcccEEEEecCce
Confidence 999999999999999999999999999999999999999999999999989999997654 5578889999999999999
Q ss_pred EEecChhhHH
Q 002833 423 VYQGPRDNVL 432 (875)
Q Consensus 423 v~~Gp~~~~~ 432 (875)
|+.|+.+++.
T Consensus 189 VE~g~~~~~~ 198 (268)
T COG4608 189 VEIGPTEEVF 198 (268)
T ss_pred eEecCHHHHh
Confidence 9999999883
No 342
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.5e-30 Score=312.56 Aligned_cols=201 Identities=22% Similarity=0.275 Sum_probs=160.6
Q ss_pred hhhccccCCcccccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEE
Q 002833 171 LGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYI 250 (875)
Q Consensus 171 l~~~~~~~~~~~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv 250 (875)
+.+.++...+ +++.+|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.+++. ..++|+
T Consensus 313 l~~~~l~~~y-~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~---~G~i~~~~~--------~~igy~ 380 (638)
T PRK10636 313 LKMEKVSAGY-GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPV---SGEIGLAKG--------IKLGYF 380 (638)
T ss_pred EEEEeeEEEe-CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCC--------EEEEEe
Confidence 4445554444 3457999999999999999999999999999999999999986 999999741 258999
Q ss_pred ecCC--CCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCC
Q 002833 251 SQHD--LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD 328 (875)
Q Consensus 251 ~Q~d--~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~ 328 (875)
+|+. .+.+..||.+++.-. . .. .....+..+|+.+|+.
T Consensus 381 ~Q~~~~~l~~~~~~~~~~~~~---~-~~------------------------------------~~~~~~~~~L~~~~l~ 420 (638)
T PRK10636 381 AQHQLEFLRADESPLQHLARL---A-PQ------------------------------------ELEQKLRDYLGGFGFQ 420 (638)
T ss_pred cCcchhhCCccchHHHHHHHh---C-ch------------------------------------hhHHHHHHHHHHcCCC
Confidence 9974 344566777665210 0 00 0011346688999996
Q ss_pred -ccccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhH
Q 002833 329 -ICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPET 407 (875)
Q Consensus 329 -~~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei 407 (875)
+..++.++. |||||||||+||++|+.+|++|+|||||+|||..+...+.+.|+++ +.|+|++.|+ ...+
T Consensus 421 ~~~~~~~~~~-----LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~----~gtvi~vSHd-~~~~ 490 (638)
T PRK10636 421 GDKVTEETRR-----FSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF----EGALVVVSHD-RHLL 490 (638)
T ss_pred hhHhcCchhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc----CCeEEEEeCC-HHHH
Confidence 467777765 9999999999999999999999999999999999999999999986 3488877654 5578
Q ss_pred HhhcCeEEEEeCCeEE-EecChhhHHH
Q 002833 408 YDLFDDIILLSEGQIV-YQGPRDNVLE 433 (875)
Q Consensus 408 ~~lfD~vilL~~G~iv-~~Gp~~~~~~ 433 (875)
.++||+|++|++|+++ +.|+.++..+
T Consensus 491 ~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 491 RSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred HHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 8899999999999997 8899887643
No 343
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.97 E-value=4.1e-30 Score=277.94 Aligned_cols=214 Identities=23% Similarity=0.301 Sum_probs=178.9
Q ss_pred cccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCC--CCCCccEEEECCEeCCCCcc-------CceEEEEec
Q 002833 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGK--DLRASGKITYCGHELNEFVP-------QRTCAYISQ 252 (875)
Q Consensus 182 ~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~--~~~~sG~I~~nG~~~~~~~~-------~~~~~yv~Q 252 (875)
+...++++|||.|++||.+||+|.||||||-..+.+.|+++. ....+|+|.|+|.++-.... ...|++|+|
T Consensus 21 ~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQ 100 (534)
T COG4172 21 GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQ 100 (534)
T ss_pred cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEec
Confidence 456799999999999999999999999999999999999975 23468999999998754432 257999999
Q ss_pred CC--CCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCcc
Q 002833 253 HD--LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDIC 330 (875)
Q Consensus 253 ~d--~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~ 330 (875)
++ .+.|-.|+..-+.-..+++.. +++++ .+.++-++|+..|+.+-
T Consensus 101 EPMtSLNPl~tIg~Qi~E~l~~Hrg---------~~~~~------------------------Ar~r~lelL~~VgI~~p 147 (534)
T COG4172 101 EPMTSLNPLHTIGKQLAEVLRLHRG---------LSRAA------------------------ARARALELLELVGIPEP 147 (534)
T ss_pred ccccccCcHhHHHHHHHHHHHHHhc---------ccHHH------------------------HHHHHHHHHHHcCCCch
Confidence 97 467777888877766665421 22221 23346678899999876
Q ss_pred ccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhh
Q 002833 331 ADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL 410 (875)
Q Consensus 331 ~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~l 410 (875)
...+ +.++..|||||||||.||.||+.+|++|+.||||++||.....+|.++|+++.++.|+.+++.+| +..-+-++
T Consensus 148 ~~rl--~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITH-DL~iVr~~ 224 (534)
T COG4172 148 EKRL--DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITH-DLGIVRKF 224 (534)
T ss_pred hhhh--hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEec-cHHHHHHh
Confidence 5543 56788899999999999999999999999999999999999999999999999999999988765 45578889
Q ss_pred cCeEEEEeCCeEEEecChhhH
Q 002833 411 FDDIILLSEGQIVYQGPRDNV 431 (875)
Q Consensus 411 fD~vilL~~G~iv~~Gp~~~~ 431 (875)
+|+|+||.+|++|++|+++++
T Consensus 225 ADrV~VM~~G~ivE~~~t~~l 245 (534)
T COG4172 225 ADRVYVMQHGEIVETGTTETL 245 (534)
T ss_pred hhhEEEEeccEEeecCcHHHH
Confidence 999999999999999999887
No 344
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.97 E-value=9.7e-31 Score=323.47 Aligned_cols=207 Identities=27% Similarity=0.394 Sum_probs=186.0
Q ss_pred cccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc----cCceEEEEecCCCCCCCCC
Q 002833 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV----PQRTCAYISQHDLHHGEMT 261 (875)
Q Consensus 186 IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~----~~~~~~yv~Q~d~~~~~lT 261 (875)
+.+++|+.|++||+.+++|||||||||++|+|.|..+|+ +|++.++|+++.... .++.+||+||.|.+.+.||
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t---~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT 656 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPT---SGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELT 656 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCC---cceEEEecCccccccchhhhhhhcccCCchhhhhhhcc
Confidence 999999999999999999999999999999999999997 999999999986421 3577999999999999999
Q ss_pred HHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCC
Q 002833 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (875)
Q Consensus 262 V~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (875)
.||+|.+.++++|.... + .+..++.+++.+||.+.+|+.++.
T Consensus 657 ~rEhL~~~arlrG~~~~--------------------d--------------i~~~v~~ll~~~~L~~~~~~~~~~---- 698 (885)
T KOG0059|consen 657 GREHLEFYARLRGLPRS--------------------D--------------IGSAIEKLLRLVGLGPYANKQVRT---- 698 (885)
T ss_pred HHHHHHHHHHHcCCChh--------------------H--------------HHHHHHHHHHHcCChhhhccchhh----
Confidence 99999999999986321 0 122467899999999999999886
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCe
Q 002833 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (875)
Q Consensus 342 gLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~ 421 (875)
+|||+|||+++|.+|+++|++++|||||+|+||.++..+.+.++++.+. ++.+|.+ .|..+|...+|||+.+|.+|+
T Consensus 699 -ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~-g~aiiLT-SHsMeE~EaLCtR~aImv~G~ 775 (885)
T KOG0059|consen 699 -YSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKN-GKAIILT-SHSMEEAEALCTRTAIMVIGQ 775 (885)
T ss_pred -CCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEE-cCCHHHHHHHhhhhheeecCe
Confidence 9999999999999999999999999999999999999999999999873 5566665 577889999999999999999
Q ss_pred EEEecChhhHHHHHH
Q 002833 422 IVYQGPRDNVLEFFE 436 (875)
Q Consensus 422 iv~~Gp~~~~~~~F~ 436 (875)
+..-|+++++...|-
T Consensus 776 l~ciGs~q~LKsrfG 790 (885)
T KOG0059|consen 776 LRCIGSPQELKSRYG 790 (885)
T ss_pred eEEecChHHHHhhcC
Confidence 999999999987764
No 345
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.97 E-value=3.7e-30 Score=309.56 Aligned_cols=204 Identities=25% Similarity=0.315 Sum_probs=161.7
Q ss_pred HhhhccccCCcccccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEE
Q 002833 170 ALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAY 249 (875)
Q Consensus 170 ~l~~~~~~~~~~~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~y 249 (875)
++.+.++...+. ++++|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.+ |.+ -.++|
T Consensus 319 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~---~G~i~~-~~~-------~~i~y 386 (635)
T PRK11147 319 VFEMENVNYQID-GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQAD---SGRIHC-GTK-------LEVAY 386 (635)
T ss_pred eEEEeeeEEEEC-CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEE-CCC-------cEEEE
Confidence 344555544443 457999999999999999999999999999999999999986 999998 432 15899
Q ss_pred EecCC-CCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCC
Q 002833 250 ISQHD-LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD 328 (875)
Q Consensus 250 v~Q~d-~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~ 328 (875)
++|+. .+++.+||.|++.++....... . ....+..+|+.+++.
T Consensus 387 ~~q~~~~l~~~~tv~e~l~~~~~~~~~~----------~--------------------------~~~~~~~~l~~~~l~ 430 (635)
T PRK11147 387 FDQHRAELDPEKTVMDNLAEGKQEVMVN----------G--------------------------RPRHVLGYLQDFLFH 430 (635)
T ss_pred EeCcccccCCCCCHHHHHHhhccccccc----------c--------------------------hHHHHHHHHHhcCCC
Confidence 99975 5789999999998753210000 0 001245678888985
Q ss_pred -ccccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhH
Q 002833 329 -ICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPET 407 (875)
Q Consensus 329 -~~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei 407 (875)
+..++.++. |||||||||+||++|+.+|++|||||||+|||..+...+.+.|+++ +.|+|++.|+ ...+
T Consensus 431 ~~~~~~~~~~-----LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vSHd-~~~~ 500 (635)
T PRK11147 431 PKRAMTPVKA-----LSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY----QGTVLLVSHD-RQFV 500 (635)
T ss_pred HHHHhChhhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC----CCeEEEEECC-HHHH
Confidence 467777765 9999999999999999999999999999999999999999999875 4588877655 5577
Q ss_pred HhhcCeEEEEe-CCeEE-EecChhhH
Q 002833 408 YDLFDDIILLS-EGQIV-YQGPRDNV 431 (875)
Q Consensus 408 ~~lfD~vilL~-~G~iv-~~Gp~~~~ 431 (875)
..+||++++|. +|+++ |.|+.++.
T Consensus 501 ~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 501 DNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred HHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 88999999998 89986 45666543
No 346
>PLN03073 ABC transporter F family; Provisional
Probab=99.97 E-value=7.2e-30 Score=308.30 Aligned_cols=205 Identities=18% Similarity=0.192 Sum_probs=158.4
Q ss_pred hhhccccCCcccccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEE
Q 002833 171 LGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYI 250 (875)
Q Consensus 171 l~~~~~~~~~~~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv 250 (875)
+.+.++...+.+.+.+|+|+|+.|++|++++|+||||||||||||+|+|.++|+ +|+|.+++. ..++|+
T Consensus 509 L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~---~G~I~~~~~--------~~igyv 577 (718)
T PLN03073 509 ISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPS---SGTVFRSAK--------VRMAVF 577 (718)
T ss_pred EEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CceEEECCc--------eeEEEE
Confidence 445555544433446999999999999999999999999999999999999986 999998752 468999
Q ss_pred ecCCCCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCc-
Q 002833 251 SQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI- 329 (875)
Q Consensus 251 ~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~- 329 (875)
+|+. ...+++.++..+....... .. ....+..+|+.+||.+
T Consensus 578 ~Q~~--~~~l~~~~~~~~~~~~~~~---------------------~~---------------~~~~i~~~L~~~gl~~~ 619 (718)
T PLN03073 578 SQHH--VDGLDLSSNPLLYMMRCFP---------------------GV---------------PEQKLRAHLGSFGVTGN 619 (718)
T ss_pred eccc--cccCCcchhHHHHHHHhcC---------------------CC---------------CHHHHHHHHHHCCCChH
Confidence 9974 3456666664322100000 00 0112456889999974
Q ss_pred cccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHh
Q 002833 330 CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD 409 (875)
Q Consensus 330 ~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~ 409 (875)
..+..++ .|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|++. +.|+|++.|+ ...+..
T Consensus 620 ~~~~~~~-----~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~----~gtvIivSHd-~~~i~~ 689 (718)
T PLN03073 620 LALQPMY-----TLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF----QGGVLMVSHD-EHLISG 689 (718)
T ss_pred HhcCCcc-----ccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc----CCEEEEEECC-HHHHHH
Confidence 5666665 49999999999999999999999999999999999999998888764 3488887665 457888
Q ss_pred hcCeEEEEeCCeEE-EecChhhHHHH
Q 002833 410 LFDDIILLSEGQIV-YQGPRDNVLEF 434 (875)
Q Consensus 410 lfD~vilL~~G~iv-~~Gp~~~~~~~ 434 (875)
+||++++|.+|+++ +.|+.++..++
T Consensus 690 ~~drv~~l~~G~i~~~~g~~~~~~~~ 715 (718)
T PLN03073 690 SVDELWVVSEGKVTPFHGTFHDYKKT 715 (718)
T ss_pred hCCEEEEEECCEEEEeCCCHHHHHHH
Confidence 99999999999998 78887765443
No 347
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.97 E-value=7.9e-30 Score=307.42 Aligned_cols=186 Identities=15% Similarity=0.251 Sum_probs=146.6
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCH
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 262 (875)
++++|+|+|++|++||.++|+||||||||||+++|+|+++++ +|+|.+++ ++.++||+|++.+++. ||
T Consensus 464 ~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~---~G~i~~~~--------~~~i~~v~Q~~~l~~~-tv 531 (659)
T TIGR00954 464 GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVY---GGRLTKPA--------KGKLFYVPQRPYMTLG-TL 531 (659)
T ss_pred CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEeecC--------CCcEEEECCCCCCCCc-CH
Confidence 346999999999999999999999999999999999999886 89998864 4579999999987776 99
Q ss_pred HHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCcccccccc----Cc
Q 002833 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG----DE 338 (875)
Q Consensus 263 ~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg----~~ 338 (875)
+||+.++...... . .++.. ...++++++.+||.+..+...| .+
T Consensus 532 ~eni~~~~~~~~~----------~--------~~~~~---------------~~~i~~~l~~~~l~~~~~~~~g~~~~~~ 578 (659)
T TIGR00954 532 RDQIIYPDSSEDM----------K--------RRGLS---------------DKDLEQILDNVQLTHILEREGGWSAVQD 578 (659)
T ss_pred HHHHhcCCChhhh----------h--------ccCCC---------------HHHHHHHHHHcCCHHHHhhcCCcccccc
Confidence 9999886432110 0 00000 1123456677777654433221 01
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEe
Q 002833 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (875)
Q Consensus 339 ~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~ 418 (875)
....||||||||++|||+|+.+|++++|||||+|||+.+...+.+.+++ .+.|+|++.|++. ..+.+|++++|+
T Consensus 579 ~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~----~~~tvI~isH~~~--~~~~~d~il~l~ 652 (659)
T TIGR00954 579 WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE----FGITLFSVSHRKS--LWKYHEYLLYMD 652 (659)
T ss_pred cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH----cCCEEEEEeCchH--HHHhCCEEEEEe
Confidence 2457999999999999999999999999999999999999999998876 3789999888865 458899999996
Q ss_pred C
Q 002833 419 E 419 (875)
Q Consensus 419 ~ 419 (875)
.
T Consensus 653 ~ 653 (659)
T TIGR00954 653 G 653 (659)
T ss_pred C
Confidence 3
No 348
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.7e-30 Score=253.48 Aligned_cols=179 Identities=26% Similarity=0.366 Sum_probs=157.2
Q ss_pred cccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc--cCceEEEEecCCCCCCC
Q 002833 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGE 259 (875)
Q Consensus 182 ~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~ 259 (875)
....++.++||++.|||++-|.|||||||||||++|+|+++|+ +|+|.|+|.+++... .++.+-|+.-++.+=++
T Consensus 13 ~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~---~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~e 89 (209)
T COG4133 13 GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD---AGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTE 89 (209)
T ss_pred CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCC---CCeEEecCCCCccchhhHHHHHHHhhccccccch
Confidence 4568999999999999999999999999999999999999997 999999999887643 23667899988999999
Q ss_pred CCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCcc
Q 002833 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (875)
Q Consensus 260 lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (875)
|||.|||.|-.+..+.. ....+.+.++.+||....|.+++.
T Consensus 90 LTa~ENL~F~~~~~~~~-------------------------------------~~~~i~~Al~~vgL~g~~dlp~~~-- 130 (209)
T COG4133 90 LTALENLHFWQRFHGSG-------------------------------------NAATIWEALAQVGLAGLEDLPVGQ-- 130 (209)
T ss_pred hhHHHHHHHHHHHhCCC-------------------------------------chhhHHHHHHHcCcccccccchhh--
Confidence 99999999976654321 011245678899999999999986
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchh
Q 002833 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE 406 (875)
Q Consensus 340 ~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~e 406 (875)
||-||||||+|||.+++++++-+||||+++||......+-..+..-++ .|..|+.++|||.+.
T Consensus 131 ---LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~-~GGiVllttHq~l~~ 193 (209)
T COG4133 131 ---LSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAA-QGGIVLLTTHQPLPI 193 (209)
T ss_pred ---cchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhc-CCCEEEEecCCccCC
Confidence 999999999999999999999999999999999999999999998776 588899999999754
No 349
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3e-29 Score=301.36 Aligned_cols=216 Identities=21% Similarity=0.295 Sum_probs=157.1
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCH
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 262 (875)
.+.+|+|||+.|++|++++|+||||||||||||+|+|.++|+ +|+|.++|. ..++|++|+...+ ..|+
T Consensus 13 ~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd---~G~I~~~~~--------~~i~~~~q~~~~~-~~~~ 80 (638)
T PRK10636 13 VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISAD---GGSYTFPGN--------WQLAWVNQETPAL-PQPA 80 (638)
T ss_pred CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC--------CEEEEEecCCCCC-CCCH
Confidence 456999999999999999999999999999999999999887 999999874 2489999975433 3577
Q ss_pred HHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHH----HhcchhhhHHHHHHHHhCCC-ccccccccC
Q 002833 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVA----VAGQETSLVTDYVLKILGLD-ICADTMVGD 337 (875)
Q Consensus 263 ~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~ 337 (875)
.+.+.-.... ...+........... ....+..... ..+.+....++.+|+.+||. +..+..+++
T Consensus 81 ~~~v~~~~~~---------~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~ 149 (638)
T PRK10636 81 LEYVIDGDRE---------YRQLEAQLHDANERN--DGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSD 149 (638)
T ss_pred HHHHHHhhHH---------HHHHHHHHHHHhccC--CHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhh
Confidence 6655422110 011111000000000 0000100000 01112234678899999997 567777775
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEE
Q 002833 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (875)
Q Consensus 338 ~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL 417 (875)
|||||||||+||++|+.+|++|||||||+|||..+...+.+.|+++ +.|+|++.| ....+.++||+|++|
T Consensus 150 -----LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~----~~tviivsH-d~~~l~~~~d~i~~L 219 (638)
T PRK10636 150 -----FSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY----QGTLILISH-DRDFLDPIVDKIIHI 219 (638)
T ss_pred -----cCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC----CCeEEEEeC-CHHHHHHhcCEEEEE
Confidence 9999999999999999999999999999999999999999999874 467777665 455778899999999
Q ss_pred eCCeEE-EecChhhH
Q 002833 418 SEGQIV-YQGPRDNV 431 (875)
Q Consensus 418 ~~G~iv-~~Gp~~~~ 431 (875)
++|+++ |.|+.+..
T Consensus 220 ~~G~i~~~~g~~~~~ 234 (638)
T PRK10636 220 EQQSLFEYTGNYSSF 234 (638)
T ss_pred eCCEEEEecCCHHHH
Confidence 999996 67876644
No 350
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=2.1e-29 Score=255.24 Aligned_cols=157 Identities=24% Similarity=0.300 Sum_probs=127.6
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCH
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 262 (875)
.+++|+|+|+++++|++++|+||||||||||||+|.+ . +|+|.++|... .. .++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~---~G~v~~~~~~~-~~-~~~~~~~~~q---------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----A---SGKARLISFLP-KF-SRNKLIFIDQ---------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----c---CCcEEECCccc-cc-ccccEEEEhH----------
Confidence 4569999999999999999999999999999999963 2 89999988732 22 2334678776
Q ss_pred HHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCc-cccccccCccCC
Q 002833 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI-CADTMVGDEMRR 341 (875)
Q Consensus 263 ~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~~dt~vg~~~~r 341 (875)
.| .++.+||.. ..+..+ +
T Consensus 68 ~~--------------------------------------------------------~l~~~~L~~~~~~~~~-----~ 86 (176)
T cd03238 68 LQ--------------------------------------------------------FLIDVGLGYLTLGQKL-----S 86 (176)
T ss_pred HH--------------------------------------------------------HHHHcCCCccccCCCc-----C
Confidence 11 234566654 345544 4
Q ss_pred CCCHHHHHHHHHHHHHhcC--CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeC
Q 002833 342 GISGGQKKRVTTGEMLVGT--ANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (875)
Q Consensus 342 gLSGGerkRVsIA~aLv~~--p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~ 419 (875)
.||||||||++||++|+.+ |++++|||||+|||+.++..+.+.|+++++ .+.|+|++.|++. + .+.+|++++|.+
T Consensus 87 ~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tvIivSH~~~-~-~~~~d~i~~l~~ 163 (176)
T cd03238 87 TLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLID-LGNTVILIEHNLD-V-LSSADWIIDFGP 163 (176)
T ss_pred cCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-H-HHhCCEEEEECC
Confidence 5999999999999999999 999999999999999999999999999975 5899999888764 4 478999999966
Q ss_pred CeE
Q 002833 420 GQI 422 (875)
Q Consensus 420 G~i 422 (875)
|+.
T Consensus 164 g~~ 166 (176)
T cd03238 164 GSG 166 (176)
T ss_pred CCC
Confidence 543
No 351
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=1.4e-29 Score=256.84 Aligned_cols=148 Identities=25% Similarity=0.306 Sum_probs=127.5
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCH
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 262 (875)
++.+++++ +.+++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.+ ++|++|+.
T Consensus 12 ~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~---------i~~~~q~~-------- 70 (177)
T cd03222 12 VFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPN---GDNDEWDGIT---------PVYKPQYI-------- 70 (177)
T ss_pred CEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CcEEEECCEE---------EEEEcccC--------
Confidence 45688885 899999999999999999999999999999987 9999999863 56766520
Q ss_pred HHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCC
Q 002833 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (875)
Q Consensus 263 ~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (875)
.
T Consensus 71 -------------------------------------------------------------------------------~ 71 (177)
T cd03222 71 -------------------------------------------------------------------------------D 71 (177)
T ss_pred -------------------------------------------------------------------------------C
Confidence 0
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCeE
Q 002833 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (875)
Q Consensus 343 LSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~i 422 (875)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.++||++++|+++-.
T Consensus 72 LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~~~~ 150 (177)
T cd03222 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDL-AVLDYLSDRIHVFEGEPG 150 (177)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCH-HHHHHhCCEEEEEcCCCc
Confidence 8999999999999999999999999999999999999999999998764347888877664 567789999999999877
Q ss_pred EEe--cChhhH
Q 002833 423 VYQ--GPRDNV 431 (875)
Q Consensus 423 v~~--Gp~~~~ 431 (875)
+++ |++...
T Consensus 151 ~~~~~~~~~~~ 161 (177)
T cd03222 151 VYGIASQPKGT 161 (177)
T ss_pred cceeccCCcch
Confidence 766 665543
No 352
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.97 E-value=1.1e-29 Score=249.53 Aligned_cols=132 Identities=31% Similarity=0.441 Sum_probs=118.4
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHH
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (875)
.++|+++|+.+++||+++|+||||||||||+++|+|.++|+ +|+|+++|. +.++|++|
T Consensus 13 ~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~~~--------~~i~~~~~----------- 70 (144)
T cd03221 13 KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPD---EGIVTWGST--------VKIGYFEQ----------- 70 (144)
T ss_pred ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCe--------EEEEEEcc-----------
Confidence 36999999999999999999999999999999999999986 999999984 34566554
Q ss_pred HHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCC
Q 002833 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (875)
Q Consensus 264 EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (875)
|
T Consensus 71 -------------------------------------------------------------------------------l 71 (144)
T cd03221 71 -------------------------------------------------------------------------------L 71 (144)
T ss_pred -------------------------------------------------------------------------------C
Confidence 7
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCe
Q 002833 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (875)
Q Consensus 344 SGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~ 421 (875)
|+||+||++||++|+.+|++++|||||+|||+.+...+.+.|+++ +.|++++.|++ +++.+++|++++|++|+
T Consensus 72 S~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~----~~til~~th~~-~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 72 SGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY----PGTVILVSHDR-YFLDQVATKIIELEDGK 144 (144)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc----CCEEEEEECCH-HHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999999999999999999986 35888876654 57778999999999985
No 353
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.97 E-value=3.4e-29 Score=245.54 Aligned_cols=208 Identities=24% Similarity=0.302 Sum_probs=174.6
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCC--Ccc-CceEEEEecCCC--CC
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE--FVP-QRTCAYISQHDL--HH 257 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~--~~~-~~~~~yv~Q~d~--~~ 257 (875)
...+.+.|||+++.|+.++|+|.||||||||.|+|+|..+|+ +|+|.+||+++.- +.. .+.+-+++||+. +.
T Consensus 25 ~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PT---sG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~N 101 (267)
T COG4167 25 TVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLN 101 (267)
T ss_pred hhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCC---CceEEECCccccccchHhhhhheeeeecCCccccC
Confidence 456899999999999999999999999999999999999997 9999999998753 222 367899999974 67
Q ss_pred CCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCC-cccccccc
Q 002833 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVG 336 (875)
Q Consensus 258 ~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg 336 (875)
|.+.+.+-|++..++...-. . ...+..+-+.|+.+||- +.+|-.
T Consensus 102 PRl~iGqiLd~PL~l~T~~~---------~------------------------~~R~~~i~~TL~~VGL~Pdhan~~-- 146 (267)
T COG4167 102 PRLRIGQILDFPLRLNTDLE---------P------------------------EQRRKQIFETLRMVGLLPDHANYY-- 146 (267)
T ss_pred hhhhhhhHhcchhhhcccCC---------h------------------------HHHHHHHHHHHHHhccCccccccc--
Confidence 88888888888766532110 0 01223456678999984 445544
Q ss_pred CccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEE
Q 002833 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (875)
Q Consensus 337 ~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vil 416 (875)
+.-||-||||||++||||+.+|+|++.||...+||.+.+.++.+++-++.++.|.+-|.. .|+..-+..+.|+|+|
T Consensus 147 ---~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV-~QhlG~iKHi~D~viV 222 (267)
T COG4167 147 ---PHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYV-TQHIGMIKHISDQVLV 222 (267)
T ss_pred ---hhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEE-echhhHhhhhcccEEE
Confidence 446999999999999999999999999999999999999999999999999989888886 5777788899999999
Q ss_pred EeCCeEEEecChhhHH
Q 002833 417 LSEGQIVYQGPRDNVL 432 (875)
Q Consensus 417 L~~G~iv~~Gp~~~~~ 432 (875)
|++|++|+.|.+.++.
T Consensus 223 M~EG~vvE~G~t~~v~ 238 (267)
T COG4167 223 MHEGEVVERGSTADVL 238 (267)
T ss_pred EecCceeecCChhhhh
Confidence 9999999999999883
No 354
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=5.1e-30 Score=244.23 Aligned_cols=181 Identities=22% Similarity=0.285 Sum_probs=154.8
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc-CceEEEEecCCCCCCCCC
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMT 261 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lT 261 (875)
..-.|-+||++|.+||++-|||||||||||||..+.|.+.+....+|++++|++.++.... +|++|..+||+.+||+++
T Consensus 14 g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphls 93 (213)
T COG4136 14 GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLS 93 (213)
T ss_pred CceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccc
Confidence 4568999999999999999999999999999999999999988899999999999987643 689999999999999999
Q ss_pred HHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCC
Q 002833 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (875)
Q Consensus 262 V~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (875)
|.+||.|+.-..-.+ + ..+..++..|+..||+...+.-+.
T Consensus 94 Vg~Nl~fAlp~~~KG-----------~------------------------aRr~~a~aAL~~~gL~g~f~~dP~----- 133 (213)
T COG4136 94 VGQNLLFALPATLKG-----------N------------------------ARRNAANAALERSGLDGAFHQDPA----- 133 (213)
T ss_pred cccceEEecCccccc-----------H------------------------HHHhhHHHHHHHhccchhhhcChh-----
Confidence 999999985321111 0 112235668899999988876654
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCC
Q 002833 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQP 403 (875)
Q Consensus 342 gLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~ 403 (875)
.||||||-||++-|+|+..|+.++||||+|.||..-+.++.+..-.-.+..|..+|..+|+.
T Consensus 134 tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~ 195 (213)
T COG4136 134 TLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDL 195 (213)
T ss_pred hcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEeccc
Confidence 59999999999999999999999999999999999999999887776666788888776654
No 355
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=1.3e-28 Score=254.19 Aligned_cols=206 Identities=24% Similarity=0.275 Sum_probs=175.1
Q ss_pred cccccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCC
Q 002833 180 KKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGE 259 (875)
Q Consensus 180 ~~~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~ 259 (875)
+.....+|+||||++++||.++|+|+||||||||||+|||.++|+ +|+|.++|+-..-+. -.-.+.|+
T Consensus 36 ~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt---~G~v~v~G~v~~li~---------lg~Gf~pe 103 (249)
T COG1134 36 KVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT---SGKVKVTGKVAPLIE---------LGAGFDPE 103 (249)
T ss_pred CcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCC---CceEEEcceEehhhh---------cccCCCcc
Confidence 445678999999999999999999999999999999999999997 999999997532211 11234567
Q ss_pred CCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCcc
Q 002833 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (875)
Q Consensus 260 lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (875)
+|.+||+.+-+.+.|.. ++| .+...+++++.-+|.+..|.+|.
T Consensus 104 lTGreNi~l~~~~~G~~----------~~e------------------------i~~~~~eIieFaELG~fi~~Pvk--- 146 (249)
T COG1134 104 LTGRENIYLRGLILGLT----------RKE------------------------IDEKVDEIIEFAELGDFIDQPVK--- 146 (249)
T ss_pred cchHHHHHHHHHHhCcc----------HHH------------------------HHHHHHHHHHHHHHHHHhhCchh---
Confidence 89999999988776542 222 23356788888899999998876
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeC
Q 002833 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (875)
Q Consensus 340 ~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~ 419 (875)
..|-|++-|++.+.+...+|+||++||-.+-.|+.-...-.+.++++.++ +.|+|++.|+ ...+.++||++++|++
T Consensus 147 --tYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~-~~tiv~VSHd-~~~I~~~Cd~~i~l~~ 222 (249)
T COG1134 147 --TYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEK-NKTIVLVSHD-LGAIKQYCDRAIWLEH 222 (249)
T ss_pred --hccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHc-CCEEEEEECC-HHHHHHhcCeeEEEeC
Confidence 49999999999999999999999999999999999999999999999764 5788887665 4589999999999999
Q ss_pred CeEEEecChhhHHHHHHHc
Q 002833 420 GQIVYQGPRDNVLEFFEHM 438 (875)
Q Consensus 420 G~iv~~Gp~~~~~~~F~~~ 438 (875)
|++.+.|.++++.++|+..
T Consensus 223 G~i~~~G~~~~vi~~Y~~~ 241 (249)
T COG1134 223 GQIRMEGSPEEVIPAYEED 241 (249)
T ss_pred CEEEEcCCHHHHHHHHHHh
Confidence 9999999999999988764
No 356
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.96 E-value=7.3e-29 Score=298.39 Aligned_cols=222 Identities=26% Similarity=0.313 Sum_probs=156.2
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCH
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 262 (875)
.+++|+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|. ..++|++|.+......||
T Consensus 15 ~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~---~G~I~~~~~--------~~~~~l~q~~~~~~~~~v 83 (635)
T PRK11147 15 DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLD---DGRIIYEQD--------LIVARLQQDPPRNVEGTV 83 (635)
T ss_pred CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CeEEEeCCC--------CEEEEeccCCCCCCCCCH
Confidence 356999999999999999999999999999999999999987 999999863 136888887554445688
Q ss_pred HHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCCh-hHHHHHHH---HH-HhcchhhhHHHHHHHHhCCCccccccccC
Q 002833 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP-EIDAFMKA---VA-VAGQETSLVTDYVLKILGLDICADTMVGD 337 (875)
Q Consensus 263 ~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~-~~~~~~~~---~~-~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (875)
.+++..+.... .........-.......+.. ....+... .. ..+.+....++.+++.+||.. +..++
T Consensus 84 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~--~~~~~- 155 (635)
T PRK11147 84 YDFVAEGIEEQ-----AEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDP--DAALS- 155 (635)
T ss_pred HHHHHHhhHHH-----HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCC--CCchh-
Confidence 88764332100 00000000000000000000 00000000 00 011122345788999999963 55555
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEE
Q 002833 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (875)
Q Consensus 338 ~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL 417 (875)
.|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|+|++.|+ ...+.++||+|++|
T Consensus 156 ----~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~----~~tvlivsHd-~~~l~~~~d~i~~L 226 (635)
T PRK11147 156 ----SLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF----QGSIIFISHD-RSFIRNMATRIVDL 226 (635)
T ss_pred ----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC----CCEEEEEeCC-HHHHHHhcCeEEEE
Confidence 59999999999999999999999999999999999999999999986 2477777654 55777899999999
Q ss_pred eCCeEE-EecChhhHH
Q 002833 418 SEGQIV-YQGPRDNVL 432 (875)
Q Consensus 418 ~~G~iv-~~Gp~~~~~ 432 (875)
++|+++ |.|+.++..
T Consensus 227 ~~G~i~~~~g~~~~~~ 242 (635)
T PRK11147 227 DRGKLVSYPGNYDQYL 242 (635)
T ss_pred ECCEEEEecCCHHHHH
Confidence 999997 568776543
No 357
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.96 E-value=3.3e-29 Score=324.28 Aligned_cols=196 Identities=22% Similarity=0.331 Sum_probs=159.0
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHH
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (875)
+++|+|+|+.|++|++++|+|||||||||||++|+|.++|. +|+|.++| .++||+|++.+++. ||+
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~---~G~i~~~g----------~iayv~Q~~~l~~~-Ti~ 504 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPS---EGKIKHSG----------RISFSPQTSWIMPG-TIK 504 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECC----------EEEEEeCCCccCCc-cHH
Confidence 46999999999999999999999999999999999999986 99999988 38999999988874 999
Q ss_pred HHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCC
Q 002833 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (875)
Q Consensus 264 EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (875)
||+.|+..... ...++..+++. .+..++. +.+..+|.+|+. ...|
T Consensus 505 eNI~~g~~~~~-----------------------~~~~~~~~~~~---------L~~~l~~--l~~g~~t~vg~~-g~~L 549 (1490)
T TIGR01271 505 DNIIFGLSYDE-----------------------YRYTSVIKACQ---------LEEDIAL--FPEKDKTVLGEG-GITL 549 (1490)
T ss_pred HHHHhccccch-----------------------HHHHHHHHHHh---------HHHHHHh--ccccccccccCc-CCCc
Confidence 99998742110 00111112111 1222333 334457888864 5679
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCeE
Q 002833 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICK-FLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (875)
Q Consensus 344 SGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~-~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~i 422 (875)
||||||||+||||++.+|++++|||||+|||+.++.++.+ +++.+. .++|+|++.|++. ....||+|++|++|++
T Consensus 550 SgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~--~~~tvilvtH~~~--~~~~ad~ii~l~~g~i 625 (1490)
T TIGR01271 550 SGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM--SNKTRILVTSKLE--HLKKADKILLLHEGVC 625 (1490)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCCeEEEEeCChH--HHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999997 567764 3789999988875 3456999999999999
Q ss_pred EEecChhhHH
Q 002833 423 VYQGPRDNVL 432 (875)
Q Consensus 423 v~~Gp~~~~~ 432 (875)
+..|+.+++.
T Consensus 626 ~~~g~~~~l~ 635 (1490)
T TIGR01271 626 YFYGTFSELQ 635 (1490)
T ss_pred EEEcCHHHHH
Confidence 9999998875
No 358
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.96 E-value=3.4e-29 Score=325.03 Aligned_cols=197 Identities=23% Similarity=0.326 Sum_probs=158.5
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHH
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (875)
+++|+|+|+.|++|++++|+|||||||||||++|+|.++|. +|+|.++| .++||+|++.++ +.||+
T Consensus 651 ~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~---~G~i~~~g----------~i~yv~Q~~~l~-~~Ti~ 716 (1522)
T TIGR00957 651 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVHMKG----------SVAYVPQQAWIQ-NDSLR 716 (1522)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccC---CcEEEECC----------EEEEEcCCcccc-CCcHH
Confidence 46999999999999999999999999999999999999986 99999987 489999998765 57999
Q ss_pred HHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhC-CCccccccccCccCCC
Q 002833 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILG-LDICADTMVGDEMRRG 342 (875)
Q Consensus 264 EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lg-L~~~~dt~vg~~~~rg 342 (875)
||+.|+.... . .+.++..+++. +.+.++ +++..+|.+|+. ...
T Consensus 717 eNI~~g~~~~-------------~----------~~~~~~~~~~~------------l~~~l~~~~~g~~t~ig~~-g~~ 760 (1522)
T TIGR00957 717 ENILFGKALN-------------E----------KYYQQVLEACA------------LLPDLEILPSGDRTEIGEK-GVN 760 (1522)
T ss_pred HHhhcCCccC-------------H----------HHHHHHHHHhC------------CHHHHHhcCCCCCceecCC-CCC
Confidence 9999863210 0 00111111111 112222 345667888864 567
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HhCCcEEEEeecCCchhHHhhcCeEEEEeCCe
Q 002833 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMV-HILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (875)
Q Consensus 343 LSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~-~~~~~tviisi~q~~~ei~~lfD~vilL~~G~ 421 (875)
|||||||||+||||++.+|++++|||||++||+.++..+.+.+.+.. ...++|+|++.|++. ....+|+|++|++|+
T Consensus 761 LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~--~l~~~D~ii~l~~G~ 838 (1522)
T TIGR00957 761 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGIS--YLPQVDVIIVMSGGK 838 (1522)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChh--hhhhCCEEEEecCCe
Confidence 99999999999999999999999999999999999999999987532 124789999988874 456699999999999
Q ss_pred EEEecChhhHH
Q 002833 422 IVYQGPRDNVL 432 (875)
Q Consensus 422 iv~~Gp~~~~~ 432 (875)
++.+|+.+++.
T Consensus 839 i~~~g~~~~l~ 849 (1522)
T TIGR00957 839 ISEMGSYQELL 849 (1522)
T ss_pred EEeeCCHHHHH
Confidence 99999998875
No 359
>PRK13409 putative ATPase RIL; Provisional
Probab=99.96 E-value=1.1e-29 Score=301.41 Aligned_cols=187 Identities=24% Similarity=0.290 Sum_probs=151.9
Q ss_pred CcccccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEE-----------ECCEeCCCCc-----
Q 002833 179 SKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKIT-----------YCGHELNEFV----- 242 (875)
Q Consensus 179 ~~~~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~-----------~nG~~~~~~~----- 242 (875)
.+.+...+|++++ .+++|++++|+||||||||||||+|+|.++|+ +|+|. ++|+++....
T Consensus 82 ~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~---~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~ 157 (590)
T PRK13409 82 RYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPN---LGDYEEEPSWDEVLKRFRGTELQNYFKKLYN 157 (590)
T ss_pred EecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCC---CccccCCCcHHHHHHHhCChHHHHHHHHHhc
Confidence 3433346999999 99999999999999999999999999999997 99997 9998864321
Q ss_pred cCceEEEEecCCCCCCC---CCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHH
Q 002833 243 PQRTCAYISQHDLHHGE---MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTD 319 (875)
Q Consensus 243 ~~~~~~yv~Q~d~~~~~---lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (875)
.+..++|.+|....+|. .||+|++.+.. ....++
T Consensus 158 ~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~-------------------------------------------~~~~~~ 194 (590)
T PRK13409 158 GEIKVVHKPQYVDLIPKVFKGKVRELLKKVD-------------------------------------------ERGKLD 194 (590)
T ss_pred cCcceeecccchhhhhhhhcchHHHHHHhhh-------------------------------------------HHHHHH
Confidence 12235666665444333 39998885310 011356
Q ss_pred HHHHHhCCCccccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEe
Q 002833 320 YVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVA 399 (875)
Q Consensus 320 ~iL~~lgL~~~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviis 399 (875)
++++.+||.+..|+.+++ |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|++
T Consensus 195 ~~l~~l~l~~~~~~~~~~-----LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~--g~tvIiv 267 (590)
T PRK13409 195 EVVERLGLENILDRDISE-----LSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE--GKYVLVV 267 (590)
T ss_pred HHHHHcCCchhhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCEEEEE
Confidence 788999999888888875 999999999999999999999999999999999999999999999975 7888887
Q ss_pred ecCCchhHHhhcCeEEEEeCC
Q 002833 400 LLQPAPETYDLFDDIILLSEG 420 (875)
Q Consensus 400 i~q~~~ei~~lfD~vilL~~G 420 (875)
.|+ ..++..++|+|++|++|
T Consensus 268 sHd-~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 268 EHD-LAVLDYLADNVHIAYGE 287 (590)
T ss_pred eCC-HHHHHHhCCEEEEEeCC
Confidence 665 45788899999999864
No 360
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.1e-28 Score=240.15 Aligned_cols=205 Identities=26% Similarity=0.416 Sum_probs=156.1
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEe---CC-----CCc----cCceEEEE
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE---LN-----EFV----PQRTCAYI 250 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~---~~-----~~~----~~~~~~yv 250 (875)
...-.+||||.+.|||.++|+|.|||||||||++|++++.|+ +|+|.|.-.+ .+ +.. .+..-|+|
T Consensus 18 ~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~---~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~V 94 (258)
T COG4107 18 PGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD---AGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFV 94 (258)
T ss_pred CCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCC---CCeEEEEcCCCCchhHhhhchHHHHHHhhhcccee
Confidence 345789999999999999999999999999999999999997 9999996532 21 111 12346999
Q ss_pred ecCCCCCCCCCH------HHHHH-HhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHH
Q 002833 251 SQHDLHHGEMTV------RETLD-FSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK 323 (875)
Q Consensus 251 ~Q~d~~~~~lTV------~EtL~-f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~ 323 (875)
.|++.-=-.++| .|-+. .+++-.| + .+.....+|+
T Consensus 95 hQnP~DGLRm~VSAG~NiGERlma~G~RHYG------------------------~--------------iR~~a~~WL~ 136 (258)
T COG4107 95 HQNPRDGLRMQVSAGGNIGERLMAIGARHYG------------------------N--------------IRAEAQDWLE 136 (258)
T ss_pred ecCccccceeeeccCCccchhHHhhhhhhhh------------------------h--------------HHHHHHHHHH
Confidence 998653323333 22221 1111000 0 1112345677
Q ss_pred HhCCCccccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCC
Q 002833 324 ILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQP 403 (875)
Q Consensus 324 ~lgL~~~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~ 403 (875)
...++... + |+.++..|||++||+.|||-|++.|+++||||||-|||.+-...+.++++.+.++.+..+||.+|.-
T Consensus 137 ~VEI~~~R---i-DD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl 212 (258)
T COG4107 137 EVEIDLDR---I-DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL 212 (258)
T ss_pred hcccCccc---c-cCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechh
Confidence 77665322 2 4567889999999999999999999999999999999999999999999999999999998887654
Q ss_pred chhHHhhcCeEEEEeCCeEEEecChhhHHH
Q 002833 404 APETYDLFDDIILLSEGQIVYQGPRDNVLE 433 (875)
Q Consensus 404 ~~ei~~lfD~vilL~~G~iv~~Gp~~~~~~ 433 (875)
.-+--++|+.++|.+|++++.|-.+.+++
T Consensus 213 -~VarLla~rlmvmk~g~vve~GLTDrvLD 241 (258)
T COG4107 213 -AVARLLADRLMVMKQGQVVESGLTDRVLD 241 (258)
T ss_pred -HHHHHhhhcceeecCCCEecccccccccc
Confidence 34556899999999999999998887753
No 361
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=3.9e-28 Score=241.55 Aligned_cols=143 Identities=31% Similarity=0.524 Sum_probs=122.3
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (875)
+.+|+++|+.+++|++++|+||||||||||+++|+|.++++ +|+|+++|.++..... ++.++|++|
T Consensus 12 ~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~---~G~i~~~~~~~~~~~~~~~~~~i~~~~q-------- 80 (157)
T cd00267 12 RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT---SGEILIDGKDIAKLPLEELRRRIGYVPQ-------- 80 (157)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEEcccCCHHHHHhceEEEee--------
Confidence 36999999999999999999999999999999999999886 9999999987653210 111222222
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccC
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (875)
T Consensus 81 -------------------------------------------------------------------------------- 80 (157)
T cd00267 81 -------------------------------------------------------------------------------- 80 (157)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCC
Q 002833 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (875)
Q Consensus 341 rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G 420 (875)
|||||+||++||++++.+|++++|||||+|||..+...+.+.|+++.+. +.|++++.|++ .++..+||++++|++|
T Consensus 81 --lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~-~~tii~~sh~~-~~~~~~~d~i~~l~~g 156 (157)
T cd00267 81 --LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEE-GRTVIIVTHDP-ELAELAADRVIVLKDG 156 (157)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCH-HHHHHhCCEEEEEeCc
Confidence 8999999999999999999999999999999999999999999998764 67888877664 4677789999999987
Q ss_pred e
Q 002833 421 Q 421 (875)
Q Consensus 421 ~ 421 (875)
+
T Consensus 157 ~ 157 (157)
T cd00267 157 K 157 (157)
T ss_pred C
Confidence 5
No 362
>PTZ00243 ABC transporter; Provisional
Probab=99.95 E-value=1e-27 Score=310.85 Aligned_cols=197 Identities=23% Similarity=0.335 Sum_probs=153.0
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCH
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 262 (875)
++.+|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++ +.++|++|++.++ ..||
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~---~G~i~~~----------~~i~yv~Q~~~l~-~~Tv 737 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEIS---EGRVWAE----------RSIAYVPQQAWIM-NATV 737 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEEC----------CeEEEEeCCCccC-CCcH
Confidence 456999999999999999999999999999999999999986 9999863 4699999998766 5799
Q ss_pred HHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCC
Q 002833 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (875)
Q Consensus 263 ~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (875)
+||+.|+... + . + ..+..++++ ..+..++.+ .+..+|.+|+ ....
T Consensus 738 ~enI~~~~~~-------~------~-~---------~~~~~~~~~---------~l~~~l~~l--~~g~~t~i~~-~g~~ 782 (1560)
T PTZ00243 738 RGNILFFDEE-------D------A-A---------RLADAVRVS---------QLEADLAQL--GGGLETEIGE-KGVN 782 (1560)
T ss_pred HHHHHcCChh-------h------H-H---------HHHHHHHHh---------hhHHHHHHh--hccchHHhcC-CCCC
Confidence 9999985210 0 0 0 001111111 122334444 1223455654 3567
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHH-HHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCe
Q 002833 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFL-KQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (875)
Q Consensus 343 LSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L-~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~ 421 (875)
|||||||||+|||||+.+|++++|||||++||+.++..+++.+ .... .++|+|+++|++. ..+.+|+|++|++|+
T Consensus 783 LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~--~~~TvIlvTH~~~--~~~~ad~ii~l~~G~ 858 (1560)
T PTZ00243 783 LSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGAL--AGKTRVLATHQVH--VVPRADYVVALGDGR 858 (1560)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhh--CCCEEEEEeCCHH--HHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999998754 3322 4789999988764 447899999999999
Q ss_pred EEEecChhhHH
Q 002833 422 IVYQGPRDNVL 432 (875)
Q Consensus 422 iv~~Gp~~~~~ 432 (875)
++++|+.+++.
T Consensus 859 i~~~G~~~~l~ 869 (1560)
T PTZ00243 859 VEFSGSSADFM 869 (1560)
T ss_pred EEEecCHHHHH
Confidence 99999998864
No 363
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.95 E-value=3.8e-27 Score=292.54 Aligned_cols=196 Identities=27% Similarity=0.411 Sum_probs=162.1
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHH
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (875)
.+.|+|||++|++|++++|+||-|||||+||.+|.|.++.. +|+|.++|. ++||+|++-.+. .|||
T Consensus 534 ~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~---sG~v~v~gs----------iaYv~Q~pWI~n-gTvr 599 (1381)
T KOG0054|consen 534 EPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKL---SGSVAVNGS----------VAYVPQQPWIQN-GTVR 599 (1381)
T ss_pred cccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccc---cceEEEcCe----------EEEeccccHhhC-CcHH
Confidence 34899999999999999999999999999999999999874 999999885 899999988775 4999
Q ss_pred HHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCC
Q 002833 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (875)
Q Consensus 264 EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (875)
||+.|+..+. + ...+..++++++.. +.--|..+-.|.||++.+ .|
T Consensus 600 eNILFG~~~d-------------~----------~rY~~Vi~aC~L~~-----------Dle~Lp~GD~TeIGErGi-nL 644 (1381)
T KOG0054|consen 600 ENILFGSPYD-------------E----------ERYDKVIKACALKK-----------DLEILPFGDLTEIGERGI-NL 644 (1381)
T ss_pred HhhhcCcccc-------------H----------HHHHHHHHHccCHh-----------HHhhcCCCCcceecCCcc-CC
Confidence 9999985321 0 01233444444321 122345677899997554 49
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCeE
Q 002833 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICK-FLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (875)
Q Consensus 344 SGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~-~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~i 422 (875)
|||||||+++|||+-.+++|++||.|.|++|+.+..+|.+ +++.+- .++|+|.++||- +....+|.|++|++|+|
T Consensus 645 SGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L--~~KT~ILVTHql--~~L~~ad~Iivl~~G~I 720 (1381)
T KOG0054|consen 645 SGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLL--RGKTVILVTHQL--QFLPHADQIIVLKDGKI 720 (1381)
T ss_pred cHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhh--cCCEEEEEeCch--hhhhhCCEEEEecCCeE
Confidence 9999999999999999999999999999999999999985 554443 478999998864 67888999999999999
Q ss_pred EEecChhhHH
Q 002833 423 VYQGPRDNVL 432 (875)
Q Consensus 423 v~~Gp~~~~~ 432 (875)
+..|+.+++.
T Consensus 721 ~~~Gty~el~ 730 (1381)
T KOG0054|consen 721 VESGTYEELL 730 (1381)
T ss_pred ecccCHHHHH
Confidence 9999999987
No 364
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.95 E-value=3e-28 Score=235.95 Aligned_cols=134 Identities=35% Similarity=0.547 Sum_probs=118.1
Q ss_pred ccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCC---ccCceEEEEecCCCCCCCCCHH
Q 002833 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF---VPQRTCAYISQHDLHHGEMTVR 263 (875)
Q Consensus 187 L~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~---~~~~~~~yv~Q~d~~~~~lTV~ 263 (875)
|+|||+.|++|++++|+|+|||||||||++|+|..++. +|+|.++|.++... ..++.++|++|++.+++.+||+
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~---~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~ 77 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPD---SGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVR 77 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHES---EEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccc---ccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999999999999999999999999999886 99999999998772 2357899999999999999999
Q ss_pred HHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCC
Q 002833 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (875)
Q Consensus 264 EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (875)
|+.. ...++++++.+++.+..++.++... ..|
T Consensus 78 ~~~~-----------------------------------------------~~~~~~~l~~l~~~~~~~~~~~~~~-~~L 109 (137)
T PF00005_consen 78 ENES-----------------------------------------------DERIEEVLKKLGLEDLLDRKIGQRA-SSL 109 (137)
T ss_dssp HHHH-----------------------------------------------HHHHHHHHHHTTHGGGTGSBGTSCG-GGS
T ss_pred cccc-----------------------------------------------ccccccccccccccccccccccccc-chh
Confidence 9910 1124668889999998888886543 679
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEeCCCC
Q 002833 344 SGGQKKRVTTGEMLVGTANVLYMDEIST 371 (875)
Q Consensus 344 SGGerkRVsIA~aLv~~p~iLlLDEPTs 371 (875)
||||||||+||++|+.+|++++|||||+
T Consensus 110 S~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 110 SGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp CHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred hHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 9999999999999999999999999996
No 365
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.95 E-value=4.6e-27 Score=273.13 Aligned_cols=220 Identities=28% Similarity=0.330 Sum_probs=166.8
Q ss_pred cccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCC
Q 002833 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261 (875)
Q Consensus 182 ~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lT 261 (875)
+.+.+|+|+|+.+.+|+.++|+|+||||||||||+|+|...|+ +|+|...+ .-.++|++|+....+..|
T Consensus 14 g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~---~G~i~~~~--------~~~v~~l~Q~~~~~~~~t 82 (530)
T COG0488 14 GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPK--------GLRVGYLSQEPPLDPEKT 82 (530)
T ss_pred CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC---CCeEeecC--------CceEEEeCCCCCcCCCcc
Confidence 5678999999999999999999999999999999999999997 99998753 236899999999999999
Q ss_pred HHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCCh---hHHHHHHH-HHHhcchhhhHHHHHHHHhCCCccccccccC
Q 002833 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP---EIDAFMKA-VAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (875)
Q Consensus 262 V~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (875)
|.+.+.-+.... .++..++..... ..+++ ..+.+... ....+.+.+..+..+|.-||+... ++.+++
T Consensus 83 v~~~v~~~~~~~-----~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~ 153 (530)
T COG0488 83 VLDYVIEGFGEL-----RELLAELEEAYA---LLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSS 153 (530)
T ss_pred HHHHHHhhhHHH-----HHHHHHHHHHHH---hcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhh
Confidence 999987664321 111111111110 01111 11111111 111223445677889999999887 778775
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEE
Q 002833 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (875)
Q Consensus 338 ~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL 417 (875)
||||||.||++|++|+.+|++|+|||||++||..+...+-+.|++. .| |+|++ .|+..-.-+.|++|+-|
T Consensus 154 -----LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~---~g-tviiV-SHDR~FLd~V~t~I~~l 223 (530)
T COG0488 154 -----LSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY---PG-TVIVV-SHDRYFLDNVATHILEL 223 (530)
T ss_pred -----cCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC---CC-cEEEE-eCCHHHHHHHhhheEEe
Confidence 9999999999999999999999999999999999999999999864 35 66665 46676777899999999
Q ss_pred eCCeEE-EecChhhH
Q 002833 418 SEGQIV-YQGPRDNV 431 (875)
Q Consensus 418 ~~G~iv-~~Gp~~~~ 431 (875)
+.|++. |.|..+..
T Consensus 224 d~g~l~~y~Gny~~~ 238 (530)
T COG0488 224 DRGKLTPYKGNYSSY 238 (530)
T ss_pred cCCceeEecCCHHHH
Confidence 999875 66766543
No 366
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.95 E-value=6.1e-27 Score=290.69 Aligned_cols=259 Identities=22% Similarity=0.267 Sum_probs=195.1
Q ss_pred HhHHHHHHHHHHhhccChHHHHHHHhhhccccCCCCCceEEEEeeeeEEEEeecccccccchhHHHHHHHHHHhhhcccc
Q 002833 98 QDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLV 177 (875)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~ 177 (875)
+.....+||+.+-.+..+|.... ..... ...-.+.+-+|.|+|+++....
T Consensus 1101 En~m~SVERv~eY~~~~~E~p~~-~~~~~-pp~~WP~~G~I~f~~~~~RYrp---------------------------- 1150 (1381)
T KOG0054|consen 1101 ENNMVSVERVLEYTDIPSEAPLE-IEESR-PPPSWPSKGEIEFEDLSLRYRP---------------------------- 1150 (1381)
T ss_pred HhcchhhhHHHHHhcCCCCCCCC-CcCCC-CCCCCCCCCeEEEEEeEEEeCC----------------------------
Confidence 44556667777766644441110 00000 1112234568999999876421
Q ss_pred CCcccccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCC
Q 002833 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHD 254 (875)
Q Consensus 178 ~~~~~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d 254 (875)
+...+|||||++|+|||.++|+|+.|||||||+++|-.+..|. +|+|.+||.++.++.. |+.++.+|||+
T Consensus 1151 ----~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~---~G~I~IDgvdI~~igL~dLRsrlsIIPQdP 1223 (1381)
T KOG0054|consen 1151 ----NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPA---EGEILIDGVDISKIGLHDLRSRLSIIPQDP 1223 (1381)
T ss_pred ----CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCcc---CCeEEEcCeecccccHHHHHhcCeeeCCCC
Confidence 1235999999999999999999999999999999999999986 9999999999987643 67899999999
Q ss_pred CCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCcccccc
Q 002833 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTM 334 (875)
Q Consensus 255 ~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 334 (875)
.+|.. |||.||+=-. ....+++++|......+. ..+ .++...|+.
T Consensus 1224 vLFsG-TvR~NLDPf~--------------------------e~sD~~IW~ALe~~~Lk~------~v~--~~p~~Ld~~ 1268 (1381)
T KOG0054|consen 1224 VLFSG-TVRFNLDPFD--------------------------EYSDDEIWEALERCQLKD------VVS--SLPGGLDSE 1268 (1381)
T ss_pred ceecC-ccccccCccc--------------------------ccCHHHHHHHHHHhChHH------HHh--hCCcCCCce
Confidence 99875 9999996221 112345566554433222 222 455567888
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeE
Q 002833 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (875)
Q Consensus 335 vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~v 414 (875)
|.+ ....+|-||||-|++||||+++.+||+|||+|+..|+.|-..|.+.||+--+ ++||+..-|.-. .+. -+|||
T Consensus 1269 v~e-gG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~--dcTVltIAHRl~-TVm-d~DrV 1343 (1381)
T KOG0054|consen 1269 VSE-GGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFK--DCTVLTIAHRLN-TVM-DSDRV 1343 (1381)
T ss_pred ecC-CCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhc--CCeEEEEeeccc-hhh-hcCeE
Confidence 864 4566999999999999999999999999999999999999999999999653 788887765443 344 48999
Q ss_pred EEEeCCeEEEecChhhHHH
Q 002833 415 ILLSEGQIVYQGPRDNVLE 433 (875)
Q Consensus 415 ilL~~G~iv~~Gp~~~~~~ 433 (875)
+||++|+++++|+|+++++
T Consensus 1344 lVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1344 LVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred EEeeCCeEeecCChHHHHh
Confidence 9999999999999999864
No 367
>PLN03073 ABC transporter F family; Provisional
Probab=99.95 E-value=2e-27 Score=287.23 Aligned_cols=232 Identities=19% Similarity=0.205 Sum_probs=148.5
Q ss_pred hhccccCCcccccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEe
Q 002833 172 GLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYIS 251 (875)
Q Consensus 172 ~~~~~~~~~~~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~ 251 (875)
.+.++...+. .+.+|+|+|+.|++|+.++|+|||||||||||++|+|........+|+ ++|+.
T Consensus 179 ~i~nls~~y~-~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~----------------I~~~~ 241 (718)
T PLN03073 179 HMENFSISVG-GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQ----------------ILHVE 241 (718)
T ss_pred EEceEEEEeC-CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCE----------------EEEEe
Confidence 3334444443 356999999999999999999999999999999999974100111344 55555
Q ss_pred cCCCCCCCCCHHHHHHHhhhhcC--CcchhHHHHHHHHHHHh-----------cCCCCCh---hHHHHHHHHHH-hcchh
Q 002833 252 QHDLHHGEMTVRETLDFSGRCLG--VGTRYELLAELSRREKQ-----------AGIKPDP---EIDAFMKAVAV-AGQET 314 (875)
Q Consensus 252 Q~d~~~~~lTV~EtL~f~a~~~~--~~~~~~~~~~l~~~e~~-----------~~~~~~~---~~~~~~~~~~~-~~~~~ 314 (875)
|+.. ....|+.|.+.-+..-.. ......+.......+.. .+..++. ..+...+.... .+...
T Consensus 242 Q~~~-g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 320 (718)
T PLN03073 242 QEVV-GDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTA 320 (718)
T ss_pred ccCC-CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchH
Confidence 5422 234455544321100000 00000000000000000 0000000 11111111111 11234
Q ss_pred hhHHHHHHHHhCCC-ccccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCC
Q 002833 315 SLVTDYVLKILGLD-ICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILD 393 (875)
Q Consensus 315 ~~~~~~iL~~lgL~-~~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~ 393 (875)
..+++.+|+.+||. +..++.+++ |||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++ +
T Consensus 321 ~~r~~~~L~~lgl~~~~~~~~~~~-----LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~----~ 391 (718)
T PLN03073 321 EARAASILAGLSFTPEMQVKATKT-----FSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW----P 391 (718)
T ss_pred HHHHHHHHHHCCCChHHHhCchhh-----CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc----C
Confidence 45678899999996 456666654 9999999999999999999999999999999999999999999885 5
Q ss_pred cEEEEeecCCchhHHhhcCeEEEEeCCeEE-EecChhhH
Q 002833 394 VTMIVALLQPAPETYDLFDDIILLSEGQIV-YQGPRDNV 431 (875)
Q Consensus 394 ~tviisi~q~~~ei~~lfD~vilL~~G~iv-~~Gp~~~~ 431 (875)
.|+|++.|+ ...+.++||+|++|++|+++ |.|+.++.
T Consensus 392 ~tviivsHd-~~~l~~~~d~i~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 392 KTFIVVSHA-REFLNTVVTDILHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred CEEEEEECC-HHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 688887765 55677889999999999996 77876654
No 368
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.94 E-value=2.7e-26 Score=242.16 Aligned_cols=99 Identities=24% Similarity=0.302 Sum_probs=87.0
Q ss_pred HHHHHhCCCc-cccccccCccCCCCCHHHHHHHHHHHHHhcCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q 002833 320 YVLKILGLDI-CADTMVGDEMRRGISGGQKKRVTTGEMLVGTA--NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTM 396 (875)
Q Consensus 320 ~iL~~lgL~~-~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p--~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tv 396 (875)
+.|+.+||.+ ..+..+. .|||||||||+||++|+.+| ++++|||||+|||+.+..++.+.|+++++ .+.|+
T Consensus 119 ~~l~~~~l~~~~~~~~~~-----~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~-~g~ti 192 (226)
T cd03270 119 GFLVDVGLGYLTLSRSAP-----TLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRD-LGNTV 192 (226)
T ss_pred HHHHHCCCCcccccCccC-----cCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHh-CCCEE
Confidence 4688999976 4666655 59999999999999999998 59999999999999999999999999975 58899
Q ss_pred EEeecCCchhHHhhcCeEEEE------eCCeEEEec
Q 002833 397 IVALLQPAPETYDLFDDIILL------SEGQIVYQG 426 (875)
Q Consensus 397 iisi~q~~~ei~~lfD~vilL------~~G~iv~~G 426 (875)
|++.|++. ++ ++||++++| ++|+|+++|
T Consensus 193 i~itH~~~-~~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 193 LVVEHDED-TI-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred EEEEeCHH-HH-HhCCEEEEeCCCccccCCEEEecC
Confidence 99888764 44 799999999 999999987
No 369
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.93 E-value=1.3e-25 Score=240.63 Aligned_cols=103 Identities=24% Similarity=0.264 Sum_probs=89.1
Q ss_pred HHHHHHHhCCCc-cccccccCccCCCCCHHHHHHHHHHHHHhcC---CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCC
Q 002833 318 TDYVLKILGLDI-CADTMVGDEMRRGISGGQKKRVTTGEMLVGT---ANVLYMDEISTGLDSSTTFQICKFLKQMVHILD 393 (875)
Q Consensus 318 ~~~iL~~lgL~~-~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~---p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~ 393 (875)
...+|+.+||.+ ..+..+ +.||||||||+.||++|+.+ |++++|||||+|||+.....+.+.|+++.+ .|
T Consensus 149 ~~~~L~~vgL~~l~l~~~~-----~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~-~g 222 (261)
T cd03271 149 KLQTLCDVGLGYIKLGQPA-----TTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVD-KG 222 (261)
T ss_pred HHHHHHHcCCchhhhcCcc-----ccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHh-CC
Confidence 456888999986 355554 45999999999999999996 799999999999999999999999999976 48
Q ss_pred cEEEEeecCCchhHHhhcCeEEEE------eCCeEEEecCh
Q 002833 394 VTMIVALLQPAPETYDLFDDIILL------SEGQIVYQGPR 428 (875)
Q Consensus 394 ~tviisi~q~~~ei~~lfD~vilL------~~G~iv~~Gp~ 428 (875)
.|+|++.|++. . .+.+|+++.| ++|+++++|++
T Consensus 223 ~tvIiitH~~~-~-i~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 223 NTVVVIEHNLD-V-IKCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred CEEEEEeCCHH-H-HHhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 89999888764 3 4679999999 89999999974
No 370
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.93 E-value=1.1e-25 Score=232.65 Aligned_cols=167 Identities=16% Similarity=0.227 Sum_probs=128.8
Q ss_pred cceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC------CCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCC
Q 002833 188 KDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD------LRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261 (875)
Q Consensus 188 ~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~------~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lT 261 (875)
+++++.+++| +++|+|||||||||||++|+|.+++. ....|++.++|++.......+.++|++|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6789999999 99999999999999999999997653 123467888888765433347899999987655
Q ss_pred HHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCC
Q 002833 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (875)
Q Consensus 262 V~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (875)
|... . ...++++++. .+..++.++
T Consensus 89 ------~~~~---~---------------------------------------~~~~~~~l~~---~~~~~~~~~----- 112 (197)
T cd03278 89 ------YSII---S---------------------------------------QGDVSEIIEA---PGKKVQRLS----- 112 (197)
T ss_pred ------eeEE---e---------------------------------------hhhHHHHHhC---CCccccchh-----
Confidence 2110 0 0012334444 344455554
Q ss_pred CCCHHHHHHHHHHHHHh----cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEE
Q 002833 342 GISGGQKKRVTTGEMLV----GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (875)
Q Consensus 342 gLSGGerkRVsIA~aLv----~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL 417 (875)
.||||||||++||++|+ .+|++++|||||+|||+.....+.+.|+++++ +.|+|++.|++. ..+.+|+++.+
T Consensus 113 ~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~--~~tiIiitH~~~--~~~~~d~v~~~ 188 (197)
T cd03278 113 LLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSK--ETQFIVITHRKG--TMEAADRLYGV 188 (197)
T ss_pred hcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhcc--CCEEEEEECCHH--HHhhcceEEEE
Confidence 59999999999999987 57799999999999999999999999999864 578888877754 35789999999
Q ss_pred eC
Q 002833 418 SE 419 (875)
Q Consensus 418 ~~ 419 (875)
..
T Consensus 189 ~~ 190 (197)
T cd03278 189 TM 190 (197)
T ss_pred Ee
Confidence 64
No 371
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.92 E-value=3.5e-24 Score=243.63 Aligned_cols=205 Identities=24% Similarity=0.398 Sum_probs=163.9
Q ss_pred cccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccC----ceEEEEecC---CCCCC
Q 002833 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ----RTCAYISQH---DLHHG 258 (875)
Q Consensus 186 IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~----~~~~yv~Q~---d~~~~ 258 (875)
-++||||++++||+++|-|--|||+|=|+++|.|..++. +|+|.+||+++.-..++ .-++||+.| +.++.
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~---~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l 350 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPAS---SGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVL 350 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCC---CceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcC
Confidence 478999999999999999999999999999999977665 99999999998755442 458999987 56899
Q ss_pred CCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCc-cccccccC
Q 002833 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI-CADTMVGD 337 (875)
Q Consensus 259 ~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~~dt~vg~ 337 (875)
.++|++|+.++. +....... . +.++ .....++...+.|++.. ..+..++
T Consensus 351 ~~sI~~Ni~l~~-l~~~~~~~-~---i~~~------------------------~e~~~~~~~~~~l~Ik~~s~~~~v~- 400 (500)
T COG1129 351 DMSIAENITLAS-LRRFSRRG-L---IDRR------------------------KERALAERYIRRLRIKTPSPEQPIG- 400 (500)
T ss_pred CCcHHHheehHh-hhhhcccc-c---cChH------------------------HHHHHHHHHHHhcCcccCCccchhh-
Confidence 999999998872 21100000 0 0000 01223566777888742 3345555
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEE
Q 002833 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (875)
Q Consensus 338 ~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL 417 (875)
.||||.+|+|.||+.|..+|++|+|||||.|.|..+..+|.+.|++++++ |+++|+.. ...+|+..+||||+||
T Consensus 401 ----~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~-G~ail~iS-SElpEll~~~DRIlVm 474 (500)
T COG1129 401 ----TLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAE-GKAILMIS-SELPELLGLSDRILVM 474 (500)
T ss_pred ----cCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHC-CCEEEEEe-CChHHHHhhCCEEEEE
Confidence 59999999999999999999999999999999999999999999999984 88888865 5577999999999999
Q ss_pred eCCeEEEecChh
Q 002833 418 SEGQIVYQGPRD 429 (875)
Q Consensus 418 ~~G~iv~~Gp~~ 429 (875)
++|+++..-+.+
T Consensus 475 ~~Gri~~e~~~~ 486 (500)
T COG1129 475 REGRIVGELDRE 486 (500)
T ss_pred ECCEEEEEeccc
Confidence 999998754443
No 372
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.92 E-value=3.9e-24 Score=248.73 Aligned_cols=201 Identities=25% Similarity=0.310 Sum_probs=157.4
Q ss_pred HhhhccccCCcccccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEE
Q 002833 170 ALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAY 249 (875)
Q Consensus 170 ~l~~~~~~~~~~~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~y 249 (875)
++...++...+.+.+.+++++|+.|.+|+.++|+||||+|||||||+|+|...|. +|+|.+.- .-.+||
T Consensus 321 vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~---~G~v~~g~--------~v~igy 389 (530)
T COG0488 321 VLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL---SGTVKVGE--------TVKIGY 389 (530)
T ss_pred eEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccC---CceEEeCC--------ceEEEE
Confidence 3455566666655578999999999999999999999999999999999999886 99998742 235899
Q ss_pred EecCC-CCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCC
Q 002833 250 ISQHD-LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD 328 (875)
Q Consensus 250 v~Q~d-~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~ 328 (875)
..|+. .+.++.|+.|++.-... +.. ...+...|..+++.
T Consensus 390 f~Q~~~~l~~~~t~~d~l~~~~~-------------------------~~~---------------e~~~r~~L~~f~F~ 429 (530)
T COG0488 390 FDQHRDELDPDKTVLEELSEGFP-------------------------DGD---------------EQEVRAYLGRFGFT 429 (530)
T ss_pred EEehhhhcCccCcHHHHHHhhCc-------------------------ccc---------------HHHHHHHHHHcCCC
Confidence 99985 33578899998853210 000 11244577888886
Q ss_pred c-cccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhH
Q 002833 329 I-CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPET 407 (875)
Q Consensus 329 ~-~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei 407 (875)
. ...++|+ .||||||.||.+|..++.+|.+|+|||||+.||..+...+.+.|... ..|+|++.| ...-+
T Consensus 430 ~~~~~~~v~-----~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f----~Gtvl~VSH-Dr~Fl 499 (530)
T COG0488 430 GEDQEKPVG-----VLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF----EGTVLLVSH-DRYFL 499 (530)
T ss_pred hHHHhCchh-----hcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC----CCeEEEEeC-CHHHH
Confidence 4 3355655 49999999999999999999999999999999999999999999885 567777655 45577
Q ss_pred HhhcCeEEEEeCCeEE-EecChhhHH
Q 002833 408 YDLFDDIILLSEGQIV-YQGPRDNVL 432 (875)
Q Consensus 408 ~~lfD~vilL~~G~iv-~~Gp~~~~~ 432 (875)
-.++++++++.+ ++. +.|..++..
T Consensus 500 ~~va~~i~~~~~-~~~~~~g~y~~y~ 524 (530)
T COG0488 500 DRVATRIWLVED-KVEEFEGGYEDYL 524 (530)
T ss_pred HhhcceEEEEcC-ceeEcCCCHHHHH
Confidence 789999999998 554 447665544
No 373
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=1.2e-24 Score=211.62 Aligned_cols=194 Identities=20% Similarity=0.256 Sum_probs=146.6
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEe--CC--CCc-------cCceEEEEe
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE--LN--EFV-------PQRTCAYIS 251 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~--~~--~~~-------~~~~~~yv~ 251 (875)
..++|+|||+.++.||++++=|||||||||||++|-|-+.|+ +|+|.+.-.. ++ ... .++++|||+
T Consensus 23 ~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d---~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVS 99 (235)
T COG4778 23 RLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPD---EGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVS 99 (235)
T ss_pred EeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCC---CceEEEEeCcchhhhhccChHHHHHHHHhhhHHHH
Confidence 467999999999999999999999999999999999999997 9999885432 11 111 246799999
Q ss_pred cCCCCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccc
Q 002833 252 QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICA 331 (875)
Q Consensus 252 Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~ 331 (875)
|--..+|...-.|-++-.+..+|... ......+..+|..|+|..-.
T Consensus 100 QFLRviPRV~aLdVvaePll~~gv~~----------------------------------~~a~~~a~~Ll~rLnlperL 145 (235)
T COG4778 100 QFLRVIPRVSALDVVAEPLLARGVPR----------------------------------EVARAKAADLLTRLNLPERL 145 (235)
T ss_pred HHHHhccCcchHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCCHHH
Confidence 98777777666555544433333211 01123345688888886543
Q ss_pred cccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhc
Q 002833 332 DTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF 411 (875)
Q Consensus 332 dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lf 411 (875)
=.. .+...||||+|||.|||.++.+-+||+|||||+.||+.++.-++++|++-.. ..+.++-|.|+.+--...+
T Consensus 146 W~L----aPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka--~GaAlvGIFHDeevre~va 219 (235)
T COG4778 146 WSL----APATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKA--RGAALVGIFHDEEVREAVA 219 (235)
T ss_pred hcC----CCcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHh--cCceEEEeeccHHHHHHHh
Confidence 222 1346999999999999999999999999999999999999999999998543 4466666667665555689
Q ss_pred CeEEEEeC
Q 002833 412 DDIILLSE 419 (875)
Q Consensus 412 D~vilL~~ 419 (875)
||++-+..
T Consensus 220 dR~~~~~~ 227 (235)
T COG4778 220 DRLLDVSA 227 (235)
T ss_pred hheeeccc
Confidence 99987753
No 374
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.91 E-value=5.5e-24 Score=226.56 Aligned_cols=186 Identities=17% Similarity=0.270 Sum_probs=125.8
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc----------------CCCCCCcc--------EEEECCEeC
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL----------------GKDLRASG--------KITYCGHEL 238 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l----------------~~~~~~sG--------~I~~nG~~~ 238 (875)
...++++++ |++++|+|||||||||||++|++.+ .++ +| +|.+++.+.
T Consensus 14 ~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~---~~~~~~~~~v~i~~~~~~~ 85 (243)
T cd03272 14 DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEG---SGPSVMSAYVEIIFDNSDN 85 (243)
T ss_pred cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCC---CCCCCceEEEEEEEEcCCC
Confidence 456888887 7899999999999999999998443 222 33 555555321
Q ss_pred ------CCCccCceEEEEecCCCCCC-CCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhc
Q 002833 239 ------NEFVPQRTCAYISQHDLHHG-EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAG 311 (875)
Q Consensus 239 ------~~~~~~~~~~yv~Q~d~~~~-~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~ 311 (875)
.+...++.++|++|+..+++ ..|..|...+...+ +.... ..
T Consensus 86 ~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~-gl~~~-------------------~~------------ 133 (243)
T cd03272 86 RFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESA-GFSRS-------------------NP------------ 133 (243)
T ss_pred ccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHc-CCCCC-------------------CC------------
Confidence 11122456788888766666 35776655554332 21100 00
Q ss_pred chhhhHHHHHHHHhCCCccccccccCccCCCCCHHHHHHHHHHHHHhc----CCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 002833 312 QETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG----TANVLYMDEISTGLDSSTTFQICKFLKQ 387 (875)
Q Consensus 312 ~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGerkRVsIA~aLv~----~p~iLlLDEPTsGLDs~t~~~i~~~L~~ 387 (875)
........+.+.+++....+..+ +.||||||||++||++|+. +|+++++||||+|||+.++..+.+.|++
T Consensus 134 -~~~~~qg~i~~l~~l~~~~~~~~-----~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~ 207 (243)
T cd03272 134 -YYIVPQGKINSLTNMKQDEQQEM-----QQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKE 207 (243)
T ss_pred -cEEEEcCchHHhhhccccccccc-----cccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence 00000112334555654444444 4599999999999999973 6899999999999999999999999999
Q ss_pred HHHhCCcEEEEeecCCchhHHhhcCeEEEEe
Q 002833 388 MVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (875)
Q Consensus 388 l~~~~~~tviisi~q~~~ei~~lfD~vilL~ 418 (875)
+++ +.++|++ ||. +++.++||++++|.
T Consensus 208 ~~~--~~~ii~~-~h~-~~~~~~~d~i~~l~ 234 (243)
T cd03272 208 LSD--GAQFITT-TFR-PELLEVADKFYGVK 234 (243)
T ss_pred HhC--CCEEEEE-ecC-HHHHhhCCEEEEEE
Confidence 864 5566655 443 57889999999985
No 375
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.90 E-value=1.7e-24 Score=211.36 Aligned_cols=197 Identities=27% Similarity=0.409 Sum_probs=163.6
Q ss_pred cccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCCCH
Q 002833 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEMTV 262 (875)
Q Consensus 186 IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lTV 262 (875)
-|-.+|+.+..||+.-++|||||||||||-.++|+.+. +|+|.+.|.++..... .|.-+|..|+..-...|.|
T Consensus 14 RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~----sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV 89 (248)
T COG4138 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----SGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPV 89 (248)
T ss_pred cccccccccccceEEEEECCCCccHHHHHHHHhCCCCC----CceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhh
Confidence 46678999999999999999999999999999999875 8999999999875432 3566899998877778899
Q ss_pred HHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCC
Q 002833 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (875)
Q Consensus 263 ~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (875)
...|...- |+.+ ....++++...|+|++.....+ ..
T Consensus 90 ~~YL~L~q-------------------------P~~~--------------~a~~i~~i~~~L~l~DKL~Rs~-----~q 125 (248)
T COG4138 90 WHYLTLHQ-------------------------PDKT--------------RTELLNDVAGALALDDKLGRST-----NQ 125 (248)
T ss_pred hhhhhhcC-------------------------chHH--------------HHHHHHHHHhhhcccchhhhhh-----hh
Confidence 99886541 1110 1123677888999987776555 45
Q ss_pred CCHHHHHHHHHHHHHhc-----CC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEE
Q 002833 343 ISGGQKKRVTTGEMLVG-----TA--NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (875)
Q Consensus 343 LSGGerkRVsIA~aLv~-----~p--~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vi 415 (875)
|||||=|||-+|-..+. || ++|+||||.++||......+-..|.++++ .|.+||++-| +...+.+.+|++.
T Consensus 126 LSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~-~G~~vims~H-DLNhTLrhA~~~w 203 (248)
T COG4138 126 LSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQ-QGLAIVMSSH-DLNHTLRHAHRAW 203 (248)
T ss_pred cCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHh-CCcEEEEecc-chhhHHHHHHHHH
Confidence 99999999999965542 33 69999999999999999999999999997 5999999865 5568899999999
Q ss_pred EEeCCeEEEecChhhHH
Q 002833 416 LLSEGQIVYQGPRDNVL 432 (875)
Q Consensus 416 lL~~G~iv~~Gp~~~~~ 432 (875)
+|+.|++...|.+++++
T Consensus 204 LL~rG~l~~~G~~~eVl 220 (248)
T COG4138 204 LLKRGKLLASGRREEVL 220 (248)
T ss_pred HHhcCeEEeecchhhhc
Confidence 99999999999999885
No 376
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.89 E-value=2e-24 Score=225.73 Aligned_cols=186 Identities=16% Similarity=0.250 Sum_probs=133.8
Q ss_pred cccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCC
Q 002833 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261 (875)
Q Consensus 182 ~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lT 261 (875)
+..++|+++++ ++++|+||||||||||+++|+-. +|.+.... ..+.++|++|+...++.+|
T Consensus 15 ~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~-------------~G~~~~~~-~~~~i~~~~~~~~~~~~~~ 75 (212)
T cd03274 15 AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFV-------------FGFRASKM-RQKKLSDLIHNSAGHPNLD 75 (212)
T ss_pred CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHH-------------hccCHHHh-hhhhHHHHhcCCCCCCCCc
Confidence 35668999887 89999999999999999999722 23222211 1246889999888889999
Q ss_pred HHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCC
Q 002833 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (875)
Q Consensus 262 V~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (875)
++|.+.+..+..+.. .+. ..++..... ......+++++.++|.+..++.++
T Consensus 76 ~~~~~~~~~~~~~~~-------~l~----~~g~~~~~~-------------~~~v~~~~~~~~~~L~~~~~~~~~----- 126 (212)
T cd03274 76 SCSVEVHFQEIIDKP-------LLK----SKGIDLDHN-------------RFLILQGEVEQIAQMPKKSWKNIS----- 126 (212)
T ss_pred eEEEEEEEEeCCCHH-------HHH----HCCcCCCCC-------------ceEEcCCcEEEeeccccccccchh-----
Confidence 999877665432210 000 000100000 000012446678888888887766
Q ss_pred CCCHHHHHHHHHHHHHhc----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEE
Q 002833 342 GISGGQKKRVTTGEMLVG----TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (875)
Q Consensus 342 gLSGGerkRVsIA~aLv~----~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL 417 (875)
.+|+|||||++||++++. +|+++++||||+|||+.+...+.+.|+++++ +.|+|+..|+ +++.++||++++|
T Consensus 127 ~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~--~~~~iivs~~--~~~~~~~d~v~~~ 202 (212)
T cd03274 127 NLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTK--NAQFIVISLR--NNMFELADRLVGI 202 (212)
T ss_pred hcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcC--CCEEEEEECc--HHHHHhCCEEEEE
Confidence 499999999999999963 6899999999999999999999999999864 4566666666 4788999999999
Q ss_pred eC
Q 002833 418 SE 419 (875)
Q Consensus 418 ~~ 419 (875)
+.
T Consensus 203 ~~ 204 (212)
T cd03274 203 YK 204 (212)
T ss_pred Ee
Confidence 74
No 377
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.89 E-value=2.3e-23 Score=223.25 Aligned_cols=178 Identities=17% Similarity=0.231 Sum_probs=129.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCE-eCCCC-----ccCceEEEEecCC---------CCCCCCC
Q 002833 197 SRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGH-ELNEF-----VPQRTCAYISQHD---------LHHGEMT 261 (875)
Q Consensus 197 Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~-~~~~~-----~~~~~~~yv~Q~d---------~~~~~lT 261 (875)
..+++|+|||||||||||++|++.+.+. ..|++.+.|. ++... .....+.+++|++ ...|.+|
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~--~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~lt 102 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGIT--NLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEIT 102 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhccc--ccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEE
Confidence 4499999999999999999999998763 2467777765 32111 1124789999985 3456889
Q ss_pred HHHHHHHhhhhcC-CcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCC------------
Q 002833 262 VRETLDFSGRCLG-VGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD------------ 328 (875)
Q Consensus 262 V~EtL~f~a~~~~-~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~------------ 328 (875)
|.+++.+...... ...+ ......++.+|+.+||.
T Consensus 103 V~r~I~~~~~~~~~in~~---------------------------------~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~ 149 (251)
T cd03273 103 VTRQIVLGGTNKYLINGH---------------------------------RAQQQRVQDLFQSVQLNVNNPHFLIMQGR 149 (251)
T ss_pred EEEEEEcCCceEEEECCE---------------------------------EeeHHHHHHHHHHcCCCCCCceEEEeehH
Confidence 9988865432111 0000 00112345566666764
Q ss_pred --------ccccccccCccCCCCCHHHHHHHHHHHHHh----cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q 002833 329 --------ICADTMVGDEMRRGISGGQKKRVTTGEMLV----GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTM 396 (875)
Q Consensus 329 --------~~~dt~vg~~~~rgLSGGerkRVsIA~aLv----~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tv 396 (875)
+..+.. ++.||||||||++||++|+ .+|+++++||||+|||+.+...+.+.|+++.+ +.++
T Consensus 150 v~~~~~~~~~~~~~-----~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~--g~~i 222 (251)
T cd03273 150 ITKVLNMGGVWKES-----LTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFK--GSQF 222 (251)
T ss_pred HHHHHHhHHhhccc-----ccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcC--CCEE
Confidence 223344 4469999999999999997 58899999999999999999999999999853 7788
Q ss_pred EEeecCCchhHHhhcCeEEEEe
Q 002833 397 IVALLQPAPETYDLFDDIILLS 418 (875)
Q Consensus 397 iisi~q~~~ei~~lfD~vilL~ 418 (875)
|++.|. +++.+.+|+++-+.
T Consensus 223 i~iSH~--~~~~~~~d~v~~~~ 242 (251)
T cd03273 223 IVVSLK--EGMFNNANVLFRTR 242 (251)
T ss_pred EEEECC--HHHHHhCCEEEEEE
Confidence 888887 57889999998775
No 378
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.89 E-value=8.8e-23 Score=212.14 Aligned_cols=167 Identities=22% Similarity=0.247 Sum_probs=122.2
Q ss_pred ceeEEEeCCeEEEEEcCCCCCHHHHHHHHh----cCcCCCCCCccEEEECCEeCCCCccCceEEEEecCC-----CCCCC
Q 002833 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALA----GKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHD-----LHHGE 259 (875)
Q Consensus 189 ~vs~~i~pGe~~~llGpnGSGKSTLLk~La----G~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d-----~~~~~ 259 (875)
..++.+.+| +++|+|||||||||||++|. |...++ +|.+..+...+.....+..+++++|++ .....
T Consensus 15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~---~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~ 90 (204)
T cd03240 15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPN---SKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRS 90 (204)
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcc---cccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEE
Confidence 345567788 99999999999999999995 887664 555542222222222345789999987 33444
Q ss_pred CCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCcc
Q 002833 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (875)
Q Consensus 260 lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (875)
+||.|++.+... . .++..+ + ..
T Consensus 91 ~~~~~~~~~~~~----------------~----------------------------~~~~~~---------~-----~~ 112 (204)
T cd03240 91 LAILENVIFCHQ----------------G----------------------------ESNWPL---------L-----DM 112 (204)
T ss_pred hhHhhceeeech----------------H----------------------------HHHHHH---------h-----cC
Confidence 577777755310 0 001111 2 33
Q ss_pred CCCCCHHHHHH------HHHHHHHhcCCcEEEEeCCCCCCCHHHHH-HHHHHHHHHHHhCCcEEEEeecCCchhHHhhcC
Q 002833 340 RRGISGGQKKR------VTTGEMLVGTANVLYMDEISTGLDSSTTF-QICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (875)
Q Consensus 340 ~rgLSGGerkR------VsIA~aLv~~p~iLlLDEPTsGLDs~t~~-~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD 412 (875)
++.||+||||| +++|++++.+|+++++||||+|||+.++. .+.+.|+++.+..+.++|++.|++. ..+.+|
T Consensus 113 ~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~~d 190 (204)
T cd03240 113 RGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE--LVDAAD 190 (204)
T ss_pred ccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhhCC
Confidence 45699999996 78999999999999999999999999999 9999999997644788999888753 457899
Q ss_pred eEEEEeC
Q 002833 413 DIILLSE 419 (875)
Q Consensus 413 ~vilL~~ 419 (875)
+++.|.+
T Consensus 191 ~i~~l~~ 197 (204)
T cd03240 191 HIYRVEK 197 (204)
T ss_pred EEEEEee
Confidence 9999954
No 379
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.88 E-value=2.7e-22 Score=209.78 Aligned_cols=180 Identities=16% Similarity=0.094 Sum_probs=118.8
Q ss_pred cceeEEEe-CCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEEC--CEeCCCCccCceEEEEecCCCCCCCCCHHH
Q 002833 188 KDVSGIVK-PSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYC--GHELNEFVPQRTCAYISQHDLHHGEMTVRE 264 (875)
Q Consensus 188 ~~vs~~i~-pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~n--G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 264 (875)
++++|... +|++++|+|||||||||||++|++.+... ..+....+ ...+........+++++|++.... +|..
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~--~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~--~~~r 93 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGK--TPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY--RVER 93 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecC--ccccccchhHHHHhcCCCccEEEEEEEEECCeEE--EEEE
Confidence 45565533 58999999999999999999999654211 12333322 111111122456889998863311 1111
Q ss_pred HHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCCC
Q 002833 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (875)
Q Consensus 265 tL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLS 344 (875)
.. +.. .+.+.+. ..++..++.+..+..+ +.||
T Consensus 94 ~~-------gl~-----------------------~~~~~~~-------------~~l~~g~l~~~l~~~~-----~~lS 125 (213)
T cd03279 94 SR-------GLD-----------------------YDQFTRI-------------VLLPQGEFDRFLARPV-----STLS 125 (213)
T ss_pred ec-------CCC-----------------------HHHHHHh-------------hhhhhcchHHHhcCCc-----cccC
Confidence 11 110 0000000 0122233444444444 4599
Q ss_pred HHHHHHHHHHHHHhc----------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeE
Q 002833 345 GGQKKRVTTGEMLVG----------TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (875)
Q Consensus 345 GGerkRVsIA~aLv~----------~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~v 414 (875)
||||||+++|++|+. +|+++++||||+|||+.+...+.+.|+++++ .+.|+|++.|++ ..+...+|++
T Consensus 126 ~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~-~~~tii~itH~~-~~~~~~~~~i 203 (213)
T cd03279 126 GGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRT-ENRMVGVISHVE-ELKERIPQRL 203 (213)
T ss_pred HHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEECch-HHHHhhCcEE
Confidence 999999999999985 5789999999999999999999999999975 378888887765 4677889999
Q ss_pred EEEeCCe
Q 002833 415 ILLSEGQ 421 (875)
Q Consensus 415 ilL~~G~ 421 (875)
+++++|.
T Consensus 204 ~~~~~~~ 210 (213)
T cd03279 204 EVIKTPG 210 (213)
T ss_pred EEEecCC
Confidence 9999875
No 380
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.87 E-value=2.4e-21 Score=238.11 Aligned_cols=120 Identities=23% Similarity=0.265 Sum_probs=99.3
Q ss_pred HHHHHHHhCCCc-cccccccCccCCCCCHHHHHHHHHHHHHhcCC---cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCC
Q 002833 318 TDYVLKILGLDI-CADTMVGDEMRRGISGGQKKRVTTGEMLVGTA---NVLYMDEISTGLDSSTTFQICKFLKQMVHILD 393 (875)
Q Consensus 318 ~~~iL~~lgL~~-~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p---~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~ 393 (875)
....|+.+||.+ ..+..+. .||||||||+.||++|+.+| ++++|||||+|||+.+...+.+.|+++.+ .|
T Consensus 810 ~l~~L~~vgL~~l~l~~~~~-----tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~-~G 883 (943)
T PRK00349 810 KLQTLVDVGLGYIKLGQPAT-----TLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVD-KG 883 (943)
T ss_pred HHHHHHHCCCCcccccCCcc-----cCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHh-CC
Confidence 356788999976 4565554 59999999999999999999 99999999999999999999999999975 58
Q ss_pred cEEEEeecCCchhHHhhcCeEEEE------eCCeEEEecChhhHHHHHHHcCCCCCCCCCHHHHHHH
Q 002833 394 VTMIVALLQPAPETYDLFDDIILL------SEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQE 454 (875)
Q Consensus 394 ~tviisi~q~~~ei~~lfD~vilL------~~G~iv~~Gp~~~~~~~F~~~Gf~~p~~~~~adfl~~ 454 (875)
.|+|++.|++. . .+.+|+|+.| .+|++++.|+++++.. +|. .-++.||..
T Consensus 884 ~TVIiitH~~~-~-i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~--------~~~-s~t~~~l~~ 939 (943)
T PRK00349 884 NTVVVIEHNLD-V-IKTADWIIDLGPEGGDGGGEIVATGTPEEVAK--------VEA-SYTGRYLKP 939 (943)
T ss_pred CEEEEEecCHH-H-HHhCCEEEEecCCcCCCCCEEEEeCCHHHHHh--------Ccc-cHHHHHHHH
Confidence 89999888764 3 4689999999 7999999999988743 333 335666643
No 381
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.87 E-value=1.9e-21 Score=225.28 Aligned_cols=181 Identities=26% Similarity=0.385 Sum_probs=139.7
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHH
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (875)
...|++.++.++||+.+.|.||||||||||+|+|+|+-+-. +|+|.+- ....+-|+||.+.+..- |.|
T Consensus 406 ~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g---~G~I~~P--------~~~~~lflpQ~PY~p~G-tLr 473 (604)
T COG4178 406 QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWG---SGRISMP--------ADSALLFLPQRPYLPQG-TLR 473 (604)
T ss_pred CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccC---CCceecC--------CCCceEEecCCCCCCCc-cHH
Confidence 36899999999999999999999999999999999999875 7887652 23457899998876554 999
Q ss_pred HHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccC-ccCCC
Q 002833 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD-EMRRG 342 (875)
Q Consensus 264 EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~-~~~rg 342 (875)
|-|.+...... .+| ....++|..+||.+..+..=+. +.-+-
T Consensus 474 e~l~YP~~~~~--------------------~~d------------------~~l~~vL~~vgL~~L~~rl~~~~~W~~v 515 (604)
T COG4178 474 EALCYPNAAPD--------------------FSD------------------AELVAVLHKVGLGDLAERLDEEDRWDRV 515 (604)
T ss_pred HHHhCCCCCCC--------------------CCh------------------HHHHHHHHHcCcHHHHHHHhccCcHhhh
Confidence 99987532100 011 1234567777887776654322 23467
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEe
Q 002833 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (875)
Q Consensus 343 LSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~ 418 (875)
||+||||||++||.|+.+|+++||||.|++||..+...+.+.|++-. .+.|+|-+-|+|. ...+.++.+-+.
T Consensus 516 LS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l--p~~tvISV~Hr~t--l~~~h~~~l~l~ 587 (604)
T COG4178 516 LSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL--PDATVISVGHRPT--LWNFHSRQLELL 587 (604)
T ss_pred cChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC--CCCEEEEeccchh--hHHHHhhheeec
Confidence 99999999999999999999999999999999999999999999843 4667776666654 555666655553
No 382
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.87 E-value=5.3e-21 Score=243.89 Aligned_cols=105 Identities=20% Similarity=0.299 Sum_probs=91.9
Q ss_pred HHHHHhCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHh---cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcE
Q 002833 320 YVLKILGLDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLV---GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVT 395 (875)
Q Consensus 320 ~iL~~lgL~~~-~dt~vg~~~~rgLSGGerkRVsIA~aLv---~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~t 395 (875)
.+|+.+||.+. .+..+. .|||||||||.||++|+ .+|++++|||||+|||..+..++++.|+++++ .|.|
T Consensus 791 ~~L~~vGL~~l~l~q~~~-----tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~-~G~T 864 (1809)
T PRK00635 791 HALCSLGLDYLPLGRPLS-----SLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTH-QGHT 864 (1809)
T ss_pred HHHHHcCCcchhhcCccc-----cCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCE
Confidence 37788999875 566655 49999999999999998 69999999999999999999999999999986 4889
Q ss_pred EEEeecCCchhHHhhcCeEEEEe------CCeEEEecChhhHH
Q 002833 396 MIVALLQPAPETYDLFDDIILLS------EGQIVYQGPRDNVL 432 (875)
Q Consensus 396 viisi~q~~~ei~~lfD~vilL~------~G~iv~~Gp~~~~~ 432 (875)
+|++.|++. .+ +.+|++++|. +|+++..|+++++.
T Consensus 865 VIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~ 905 (1809)
T PRK00635 865 VVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSPEELI 905 (1809)
T ss_pred EEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHH
Confidence 888877664 45 8999999996 79999999998875
No 383
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.86 E-value=2.8e-21 Score=215.98 Aligned_cols=223 Identities=22% Similarity=0.283 Sum_probs=171.9
Q ss_pred hhhccccCCcccccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeC-CCCcc----Cc
Q 002833 171 LGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL-NEFVP----QR 245 (875)
Q Consensus 171 l~~~~~~~~~~~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~-~~~~~----~~ 245 (875)
+++.++.-......+.+++|||.|+.||+++|.|-.|-|-+-|+.+|+|+.++. +|+|.++|+++ ....+ +.
T Consensus 258 L~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~---~G~I~l~G~~v~~~~~~~~~r~~ 334 (501)
T COG3845 258 LEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPA---SGRILLNGKDVLGRLSPRERRRL 334 (501)
T ss_pred EEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccC---CceEEECCEeccccCCHHHHHhc
Confidence 344444333333356899999999999999999999999999999999999875 79999999997 33333 24
Q ss_pred eEEEEecCC---CCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHH
Q 002833 246 TCAYISQHD---LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 322 (875)
Q Consensus 246 ~~~yv~Q~d---~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL 322 (875)
-++|||+|. .+.+.+|+.||+.+...-..+-.+. + -.+.++ ....+..++
T Consensus 335 G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~-------------g---~l~~~~-----------i~~~a~~li 387 (501)
T COG3845 335 GLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRG-------------G---FLDRRA-----------IRKFARELI 387 (501)
T ss_pred CCccCChhhccCccccCccHHHHhhhhhccccccccc-------------c---ccCHHH-----------HHHHHHHHH
Confidence 589999985 4578999999998764322111100 0 011111 123456788
Q ss_pred HHhCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeec
Q 002833 323 KILGLDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL 401 (875)
Q Consensus 323 ~~lgL~~~-~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~ 401 (875)
+.+++..+ .+++ .+.||||.+||+-+||.|..+|++|+..+||.|||..++..|.+.|.+.++ .|+.+++. .
T Consensus 388 ~~fdVr~~~~~~~-----a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~-~G~AVLLi-S 460 (501)
T COG3845 388 EEFDVRAPSPDAP-----ARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRD-AGKAVLLI-S 460 (501)
T ss_pred HHcCccCCCCCcc-----hhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHh-cCCEEEEE-e
Confidence 88888633 2333 456999999999999999999999999999999999999999999999986 46666654 5
Q ss_pred CCchhHHhhcCeEEEEeCCeEEEecChhh
Q 002833 402 QPAPETYDLFDDIILLSEGQIVYQGPRDN 430 (875)
Q Consensus 402 q~~~ei~~lfD~vilL~~G~iv~~Gp~~~ 430 (875)
...+|++.++|+|.||++|+++...++++
T Consensus 461 ~dLDEil~lsDrIaVi~~Gri~~~~~~~~ 489 (501)
T COG3845 461 EDLDEILELSDRIAVIYEGRIVGIVPPEE 489 (501)
T ss_pred hhHHHHHHhhheeeeeeCCceeccccccc
Confidence 67789999999999999999998888765
No 384
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.85 E-value=9.9e-22 Score=212.47 Aligned_cols=191 Identities=19% Similarity=0.210 Sum_probs=145.2
Q ss_pred cccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCCCH
Q 002833 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEMTV 262 (875)
Q Consensus 186 IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lTV 262 (875)
=+..||++|+.||++-|+|.||||||||+++|.|+++|+ +|+|.+||++++.... ++..+-|+-|-.+|+.+--
T Consensus 338 hvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~Pq---sG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~ 414 (546)
T COG4615 338 HVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQ---SGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLG 414 (546)
T ss_pred eecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCC---CCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhC
Confidence 467899999999999999999999999999999999997 9999999999876433 2223333433333322100
Q ss_pred HHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCC
Q 002833 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (875)
Q Consensus 263 ~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (875)
.|+ ++ ....++..|+.|.|.|.-.-.=|+--.-.
T Consensus 415 ~e~-----------------------------~a-----------------s~q~i~~~LqrLel~~ktsl~d~~fs~~k 448 (546)
T COG4615 415 PEG-----------------------------KA-----------------SPQLIEKWLQRLELAHKTSLNDGRFSNLK 448 (546)
T ss_pred Ccc-----------------------------CC-----------------ChHHHHHHHHHHHHhhhhcccCCcccccc
Confidence 000 00 11124556666666654333223222345
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCeE
Q 002833 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (875)
Q Consensus 343 LSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~i 422 (875)
||-|||||++.--||+-+.+|+++||=-+--||.-+..+.+.+--+-++.|+||+...|+. ..|..+||++.+.+|++
T Consensus 449 LStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd--~YF~~ADrll~~~~G~~ 526 (546)
T COG4615 449 LSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDD--HYFIHADRLLEMRNGQL 526 (546)
T ss_pred cccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCc--hhhhhHHHHHHHhcCce
Confidence 9999999999999999999999999999999999999999988887778899999987765 47899999999999999
Q ss_pred EEecC
Q 002833 423 VYQGP 427 (875)
Q Consensus 423 v~~Gp 427 (875)
++.-+
T Consensus 527 ~e~tg 531 (546)
T COG4615 527 SELTG 531 (546)
T ss_pred eeccc
Confidence 97654
No 385
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.84 E-value=2.7e-20 Score=208.73 Aligned_cols=215 Identities=21% Similarity=0.295 Sum_probs=137.2
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCC-C
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEM-T 261 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~l-T 261 (875)
++.+++|+++.+.+||-++|+|+|||||||+|++|+|...|. ..+=.++. ..++ ...... +
T Consensus 87 g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~-p~~~d~y~----------------ls~e-~~ps~~~a 148 (614)
T KOG0927|consen 87 GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPI-PEHIDFYL----------------LSRE-IEPSEKQA 148 (614)
T ss_pred CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCC-Ccccchhh----------------hccc-CCCchHHH
Confidence 456999999999999999999999999999999999998873 11111111 1111 111111 2
Q ss_pred HHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHH----HHHHHHHhcchhhhHHHHHHHHhCC-Ccccccccc
Q 002833 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDA----FMKAVAVAGQETSLVTDYVLKILGL-DICADTMVG 336 (875)
Q Consensus 262 V~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~iL~~lgL-~~~~dt~vg 336 (875)
|..-+.+...-+ .+++. ...+-.. ..++.+.+. +...........+..+-.+|..+|. ++.++..+-
T Consensus 149 v~~v~~~~~~e~---~rle~--~~E~l~~---~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~ 220 (614)
T KOG0927|consen 149 VQAVVMETDHER---KRLEY--LAEDLAQ---ACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVK 220 (614)
T ss_pred HHHHhhhhHHHH---HHHHH--HHHHHHh---hccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhh
Confidence 232222222111 00000 0000000 001111111 1222223333344455566666664 455665554
Q ss_pred CccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEE
Q 002833 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (875)
Q Consensus 337 ~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vil 416 (875)
++|||+|.|+++||+|+.+|++|+|||||+|||..+...+-+.|.+.-+ .++|++ .|+.+-+=..|.+|+-
T Consensus 221 -----~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~---~~lVi~-sh~QDfln~vCT~Ii~ 291 (614)
T KOG0927|consen 221 -----DLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR---IILVIV-SHSQDFLNGVCTNIIH 291 (614)
T ss_pred -----ccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC---ceEEEE-ecchhhhhhHhhhhhe
Confidence 5999999999999999999999999999999999999999999987532 155554 4566667789999999
Q ss_pred EeCCe-EEEecChhhHH
Q 002833 417 LSEGQ-IVYQGPRDNVL 432 (875)
Q Consensus 417 L~~G~-iv~~Gp~~~~~ 432 (875)
|.+++ +.|.||.++..
T Consensus 292 l~~kkl~~y~Gnydqy~ 308 (614)
T KOG0927|consen 292 LDNKKLIYYEGNYDQYV 308 (614)
T ss_pred ecccceeeecCCHHHHh
Confidence 99999 56778877653
No 386
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.83 E-value=5.9e-22 Score=203.66 Aligned_cols=208 Identities=23% Similarity=0.309 Sum_probs=187.1
Q ss_pred HHHHHHHHHHHHHHhhchhHH-HHHHHHHHHHHHHHHhhhccccCCCCCcccchhHHHHHHHHHHHHHHHHHHHH-HHHh
Q 002833 522 ELFRACFAREWLLMKRNSFVY-IFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAEN-AMTV 599 (875)
Q Consensus 522 ~q~~~~~~R~~~~~~Rd~~~~-~~r~~~~ii~ali~gt~F~~~~~~~~~~~~~~~~~g~lFf~~~~~~~~~~~el-~~~~ 599 (875)
+|++++++|+++..+||+... ...++..+++++++|.+|.+++... +...+.|++++.++..++...... ....
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQ----DGFNRPGLIFGSIIFSFFSSISGSSISFE 76 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhcccccc----cccccceeeehhhHHhhhhhcccchhhhh
Confidence 489999999999999999877 8999999999999999999887211 223457777777777765554444 5566
Q ss_pred hhhhHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCcchHHHHHHHHHHHHHHHhHHHHHHHHhhc
Q 002833 600 LRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAV 679 (875)
Q Consensus 600 ~~rpvf~kqr~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Y~m~Gl~~~~~~Ff~f~l~l~l~~~~~~~lf~~iaa~ 679 (875)
.++..+.|++....|++++|.+++.+.+++..++.++++.++.|++.|++.+ +|+.+++.++++..++.+++.+++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~ 154 (210)
T PF01061_consen 77 RERGTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAAL 154 (210)
T ss_pred hhccccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccc
Confidence 7889999999999999999999999999999999999999999999999988 78888899999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhhCHHHHHHHHHHHHhh
Q 002833 680 GRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEF 735 (875)
Q Consensus 680 ~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~w~~W~~~isP~~Ya~~al~~NEf 735 (875)
+++...|..+.+++..+++++||.++|.+.+|+|++|+.|+||++|+.|++..++|
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 155 FPSFRDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999886
No 387
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.83 E-value=5.3e-20 Score=225.91 Aligned_cols=106 Identities=25% Similarity=0.280 Sum_probs=90.6
Q ss_pred HHHHHHHhCCCc-cccccccCccCCCCCHHHHHHHHHHHHHhc---CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCC
Q 002833 318 TDYVLKILGLDI-CADTMVGDEMRRGISGGQKKRVTTGEMLVG---TANVLYMDEISTGLDSSTTFQICKFLKQMVHILD 393 (875)
Q Consensus 318 ~~~iL~~lgL~~-~~dt~vg~~~~rgLSGGerkRVsIA~aLv~---~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~ 393 (875)
...+|+.+||.. ..+..+ +.|||||+|||.||++|+. +|++++|||||+|||+.+...+.+.|+++.+ .|
T Consensus 808 ~l~~L~~~gL~~l~l~~~~-----~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~-~G 881 (924)
T TIGR00630 808 KLQTLCDVGLGYIKLGQPA-----TTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVD-QG 881 (924)
T ss_pred HHHHHHHcCCCchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CC
Confidence 356788899975 345444 4599999999999999997 5999999999999999999999999999975 48
Q ss_pred cEEEEeecCCchhHHhhcCeEEEE------eCCeEEEecChhhH
Q 002833 394 VTMIVALLQPAPETYDLFDDIILL------SEGQIVYQGPRDNV 431 (875)
Q Consensus 394 ~tviisi~q~~~ei~~lfD~vilL------~~G~iv~~Gp~~~~ 431 (875)
.|+|++.|++. .+ +.+|+|++| .+|++++.|+++++
T Consensus 882 ~TVIvi~H~~~-~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 882 NTVVVIEHNLD-VI-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred CEEEEEeCCHH-HH-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 89999877764 34 679999999 79999999998765
No 388
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.83 E-value=4.3e-20 Score=203.14 Aligned_cols=171 Identities=25% Similarity=0.289 Sum_probs=133.7
Q ss_pred eeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHHHHHHHh
Q 002833 190 VSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFS 269 (875)
Q Consensus 190 vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~EtL~f~ 269 (875)
=.|.|..||+++++||||-|||||.++|||.++|+ +|. . ..-.++|=||.-.--...||++-|.-.
T Consensus 360 ~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPd---eg~----~-------~~~~vSyKPQyI~~~~~gtV~~~l~~~ 425 (591)
T COG1245 360 EEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPD---EGS----E-------EDLKVSYKPQYISPDYDGTVEDLLRSA 425 (591)
T ss_pred cCCeeecceEEEEECCCCcchHHHHHHHhccccCC---CCC----C-------ccceEeecceeecCCCCCcHHHHHHHh
Confidence 34556677899999999999999999999999997 775 1 122467777765555678999988644
Q ss_pred hhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCCCHHHHH
Q 002833 270 GRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKK 349 (875)
Q Consensus 270 a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGerk 349 (875)
.+-.- .......++++-|+|+...+..|.+ |||||.|
T Consensus 426 ~~~~~--------------------------------------~~s~~~~ei~~pl~l~~i~e~~v~~-----LSGGELQ 462 (591)
T COG1245 426 IRSAF--------------------------------------GSSYFKTEIVKPLNLEDLLERPVDE-----LSGGELQ 462 (591)
T ss_pred hhhhc--------------------------------------ccchhHHhhcCccchHHHHhccccc-----CCchhHH
Confidence 32110 0112234577888999888888765 9999999
Q ss_pred HHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEe
Q 002833 350 RVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (875)
Q Consensus 350 RVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~ 418 (875)
||+||.+|..++++++||||++.||+..+..+.+.+|+++...++|.++.-|+-. -+--+.|+++|..
T Consensus 463 RvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~-~~dyvsDr~ivF~ 530 (591)
T COG1245 463 RVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIY-MIDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEeccee-hhhhhhceEEEEe
Confidence 9999999999999999999999999999999999999999988889888766543 2323578887764
No 389
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.82 E-value=9.9e-20 Score=188.42 Aligned_cols=172 Identities=17% Similarity=0.153 Sum_probs=115.2
Q ss_pred cccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCC----ccCceEEEEecCCCCCCCCC
Q 002833 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF----VPQRTCAYISQHDLHHGEMT 261 (875)
Q Consensus 186 IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~----~~~~~~~yv~Q~d~~~~~lT 261 (875)
-++++++.+.+| +++|+|||||||||||.+|...+..... ....|....++ .....+.+.+|+....+
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~----~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~--- 82 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS----DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA--- 82 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc----cccccccHHHHhhCCCCeEEEEEEEEcCCccC---
Confidence 346778888887 8899999999999999999854432100 01112211111 11244667777654333
Q ss_pred HHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCC
Q 002833 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (875)
Q Consensus 262 V~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (875)
+ ... ..+ ...++++|+. .+..++.++
T Consensus 83 ---~-----~~~----------~~~----------------------------~~~~~~~l~~---~~~~~~~~~----- 108 (198)
T cd03276 83 ---N-----PLC----------VLS----------------------------QDMARSFLTS---NKAAVRDVK----- 108 (198)
T ss_pred ---C-----cCC----------HHH----------------------------HHHHHHHhcc---ccccCCccc-----
Confidence 0 000 000 0123344444 555666655
Q ss_pred CCCHHHHHHHHHHHHH----hcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh--CCcEEEEeecCCchhHHhhcCeEE
Q 002833 342 GISGGQKKRVTTGEML----VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHI--LDVTMIVALLQPAPETYDLFDDII 415 (875)
Q Consensus 342 gLSGGerkRVsIA~aL----v~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~--~~~tviisi~q~~~ei~~lfD~vi 415 (875)
.||||||||++||++| +.+|++++|||||+|||..+...+.+.|+++++. .+.|++++.| ...++.++ |+|.
T Consensus 109 ~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th-~~~~i~~~-d~v~ 186 (198)
T cd03276 109 TLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQ-DISGLASS-DDVK 186 (198)
T ss_pred ccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECC-cccccccc-ccee
Confidence 5999999999999999 5899999999999999999999999999998654 2346666654 44566664 9999
Q ss_pred EEeCCe
Q 002833 416 LLSEGQ 421 (875)
Q Consensus 416 lL~~G~ 421 (875)
+|..|+
T Consensus 187 ~~~~~~ 192 (198)
T cd03276 187 VFRMKD 192 (198)
T ss_pred EEEecC
Confidence 998764
No 390
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.81 E-value=2.3e-20 Score=209.34 Aligned_cols=198 Identities=20% Similarity=0.244 Sum_probs=139.7
Q ss_pred hhccccCCcccccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEe
Q 002833 172 GLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYIS 251 (875)
Q Consensus 172 ~~~~~~~~~~~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~ 251 (875)
...++.+.+..+..++++++|-|.+++.++++||||+|||||||++.|.+.|. .|.|.-.-+. .+++..
T Consensus 391 ~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~---~G~vs~~~H~--------~~~~y~ 459 (614)
T KOG0927|consen 391 MVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPT---IGMVSRHSHN--------KLPRYN 459 (614)
T ss_pred EEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccc---cccccccccc--------cchhhh
Confidence 33445555655557999999999999999999999999999999999999996 8887654332 233444
Q ss_pred cC--CCCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCc
Q 002833 252 QH--DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI 329 (875)
Q Consensus 252 Q~--d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~ 329 (875)
|+ +.+.-+.++-|++.=.. ++ ......+..+|..+||..
T Consensus 460 Qh~~e~ldl~~s~le~~~~~~-------------------------~~--------------~~~~e~~r~ilgrfgLtg 500 (614)
T KOG0927|consen 460 QHLAEQLDLDKSSLEFMMPKF-------------------------PD--------------EKELEEMRSILGRFGLTG 500 (614)
T ss_pred hhhHhhcCcchhHHHHHHHhc-------------------------cc--------------cchHHHHHHHHHHhCCCc
Confidence 43 22233345555543111 10 001123466899999985
Q ss_pred cccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHh
Q 002833 330 CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD 409 (875)
Q Consensus 330 ~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~ 409 (875)
-.++.. ++.||+|||+||..|+.++.+|.+|+|||||+|||..+...+.+.|.++ .+++|.+. |..--+-+
T Consensus 501 d~q~~p----~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~----~Ggvv~vS-HDfrlI~q 571 (614)
T KOG0927|consen 501 DAQVVP----MSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF----PGGVVLVS-HDFRLISQ 571 (614)
T ss_pred cccccc----hhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc----CCceeeee-chhhHHHH
Confidence 544332 3469999999999999999999999999999999999999999998875 34555544 34445666
Q ss_pred hcCeEEEEeCCeE-EEecCh
Q 002833 410 LFDDIILLSEGQI-VYQGPR 428 (875)
Q Consensus 410 lfD~vilL~~G~i-v~~Gp~ 428 (875)
.+++|.+..+|.+ .+.|..
T Consensus 572 VaeEi~~c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 572 VAEEIWVCENGTVTKWDGDI 591 (614)
T ss_pred HHHHhHhhccCceeecCccH
Confidence 7777777766655 345543
No 391
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.81 E-value=1.2e-19 Score=194.22 Aligned_cols=76 Identities=18% Similarity=0.348 Sum_probs=68.0
Q ss_pred CCCCHHHHHHHHHHHHHhc----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEE
Q 002833 341 RGISGGQKKRVTTGEMLVG----TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (875)
Q Consensus 341 rgLSGGerkRVsIA~aLv~----~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vil 416 (875)
..||||||||++||++++. +|++++|||||+|||..+...+.+.|+++++ .+.++|++.|+ .++.+.+|++++
T Consensus 154 ~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~-~g~~vi~isH~--~~~~~~~d~i~~ 230 (247)
T cd03275 154 DNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAG-PNFQFIVISLK--EEFFSKADALVG 230 (247)
T ss_pred HHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhcc-CCcEEEEEECC--HHHHhhCCeEEE
Confidence 5699999999999999986 4899999999999999999999999999975 37888888876 467899999999
Q ss_pred EeC
Q 002833 417 LSE 419 (875)
Q Consensus 417 L~~ 419 (875)
|..
T Consensus 231 ~~~ 233 (247)
T cd03275 231 VYR 233 (247)
T ss_pred EEe
Confidence 964
No 392
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.80 E-value=5.4e-19 Score=176.99 Aligned_cols=208 Identities=23% Similarity=0.296 Sum_probs=151.3
Q ss_pred cccCCcccccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCC---CccCceEEEEe
Q 002833 175 HLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE---FVPQRTCAYIS 251 (875)
Q Consensus 175 ~~~~~~~~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~---~~~~~~~~yv~ 251 (875)
++..+++..-+++-|+|+.++.|..++++|.||||||||||+|+|..--. .|.|.++|.+.-. ........|..
T Consensus 18 gl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~---~~~v~VlgrsaFhDt~l~~Sgdl~YLG 94 (291)
T KOG2355|consen 18 GLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVG---GGVVQVLGRSAFHDTSLESSGDLSYLG 94 (291)
T ss_pred ccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccccc---CCeEEEcCcCccccccccccCceeEec
Confidence 34445555568999999999999999999999999999999999986543 5889999976421 11112233433
Q ss_pred cC----------CCCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHH
Q 002833 252 QH----------DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYV 321 (875)
Q Consensus 252 Q~----------d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 321 (875)
-+ -.+-.++++.+-| |+. .+.+. .+-+.+
T Consensus 95 geW~~~~~~agevplq~D~sae~mi-fgV---------------------------------------~g~dp-~Rre~L 133 (291)
T KOG2355|consen 95 GEWSKTVGIAGEVPLQGDISAEHMI-FGV---------------------------------------GGDDP-ERREKL 133 (291)
T ss_pred ccccccccccccccccccccHHHHH-hhc---------------------------------------cCCCh-hHhhhh
Confidence 21 1111233333222 221 11111 334667
Q ss_pred HHHhCCCccccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeec
Q 002833 322 LKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL 401 (875)
Q Consensus 322 L~~lgL~~~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~ 401 (875)
+++|.++-.- ....+|-|||+||.|+..|+.+-++|+|||.|--||..++.++.+.|+.-++..|.|+|.++|
T Consensus 134 I~iLDIdl~W-------RmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATH 206 (291)
T KOG2355|consen 134 IDILDIDLRW-------RMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATH 206 (291)
T ss_pred hhheeccceE-------EEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEee
Confidence 7787765322 223599999999999999999999999999999999999999999999999999999999876
Q ss_pred CCchhHHhhcCeEEEEeCCeEEEecChhhHHHH
Q 002833 402 QPAPETYDLFDDIILLSEGQIVYQGPRDNVLEF 434 (875)
Q Consensus 402 q~~~ei~~lfD~vilL~~G~iv~~Gp~~~~~~~ 434 (875)
- -+-......+++.++.|+++-.-+.+.+.++
T Consensus 207 I-FDGLe~Wpthl~yi~~Gkl~~~l~~~~i~e~ 238 (291)
T KOG2355|consen 207 I-FDGLETWPTHLVYIKSGKLVDNLKYQKIKEF 238 (291)
T ss_pred e-ccchhhcchhEEEecCCeeeeccccchhhhh
Confidence 3 3355667889999999999987666666554
No 393
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.80 E-value=1.8e-19 Score=180.65 Aligned_cols=221 Identities=18% Similarity=0.233 Sum_probs=162.8
Q ss_pred cccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCC-ccEEEECCEeCCCCccC-------ceEEEEecC
Q 002833 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRA-SGKITYCGHELNEFVPQ-------RTCAYISQH 253 (875)
Q Consensus 182 ~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~-sG~I~~nG~~~~~~~~~-------~~~~yv~Q~ 253 (875)
+...+.++||+++..||+.+++|.||||||-..|+|+|..+.+..+ .-+..+++.++-...++ +.+++++|+
T Consensus 18 G~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQe 97 (330)
T COG4170 18 GWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQE 97 (330)
T ss_pred CceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcC
Confidence 3456899999999999999999999999999999999998764332 23455666665544442 457899998
Q ss_pred CCC--CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccc
Q 002833 254 DLH--HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICA 331 (875)
Q Consensus 254 d~~--~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~ 331 (875)
+.- -|.-+|...|--..-...-.. .+++.. + -.+.+.-++|..+|+.+..
T Consensus 98 P~sCLDPS~~iG~QlIq~IP~wTfkg------------------------rWWq~F---~-WrKrrAIeLLHrVGIKdHk 149 (330)
T COG4170 98 PQSCLDPSERVGRQLIQNIPAWTYKG------------------------RWWQRF---G-WRKRRAIELLHRVGIKDHK 149 (330)
T ss_pred chhhcChHHHHHHHHHhhCccccccc------------------------hHhhhh---c-hhHHHHHHHHHHhccccHH
Confidence 753 333334322221110000000 000000 0 0122345688899998877
Q ss_pred cccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhc
Q 002833 332 DTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF 411 (875)
Q Consensus 332 dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lf 411 (875)
|-+- .+...|.-||-|+|.||.|++..|++|+.||||+.+|+.|+.+|.++|.++.+..+.|++.+ .|+...+-+.|
T Consensus 150 DIM~--SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~-s~Dl~~is~W~ 226 (330)
T COG4170 150 DIMR--SYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLI-SHDLQMISQWA 226 (330)
T ss_pred HHHH--hCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEE-cccHHHHHHHh
Confidence 7553 45677999999999999999999999999999999999999999999999998766666665 56677888999
Q ss_pred CeEEEEeCCeEEEecChhhHHH
Q 002833 412 DDIILLSEGQIVYQGPRDNVLE 433 (875)
Q Consensus 412 D~vilL~~G~iv~~Gp~~~~~~ 433 (875)
|++-||+-|+-++.+|.+++++
T Consensus 227 d~i~VlYCGQ~~ESa~~e~l~~ 248 (330)
T COG4170 227 DKINVLYCGQTVESAPSEELVT 248 (330)
T ss_pred hheEEEEecccccccchhHHhc
Confidence 9999999999999999998864
No 394
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.78 E-value=6.2e-19 Score=182.72 Aligned_cols=81 Identities=11% Similarity=0.112 Sum_probs=70.8
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCC
Q 002833 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICK-FLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (875)
Q Consensus 342 gLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~-~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G 420 (875)
.+|+|+||++.+++++ .+|+++++|||++|||+.+...+.. .++.+.+ .+.+++++.|+ .++.+++|++++|.+|
T Consensus 91 ~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~-~~~~vi~~tH~--~~l~~~~d~~~~l~~g 166 (200)
T cd03280 91 TFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILEELLE-RGALVIATTHY--GELKAYAYKREGVENA 166 (200)
T ss_pred hHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECCH--HHHHHHHhcCCCeEEE
Confidence 4999999999999885 8999999999999999999999974 6777764 47888888875 4778999999999999
Q ss_pred eEEEec
Q 002833 421 QIVYQG 426 (875)
Q Consensus 421 ~iv~~G 426 (875)
++++++
T Consensus 167 ~l~~~~ 172 (200)
T cd03280 167 SMEFDP 172 (200)
T ss_pred EEEEec
Confidence 999874
No 395
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=7.3e-18 Score=183.68 Aligned_cols=189 Identities=24% Similarity=0.316 Sum_probs=137.6
Q ss_pred HhhhccccCCcccccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEE
Q 002833 170 ALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAY 249 (875)
Q Consensus 170 ~l~~~~~~~~~~~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~y 249 (875)
++.+.++...+.+.++++++++|-|.=-..++|+||||.||||||++|.|.+.|. .|+..-|- +-.||+
T Consensus 586 vLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~---~GE~RKnh--------rL~iG~ 654 (807)
T KOG0066|consen 586 VLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPN---DGELRKNH--------RLRIGW 654 (807)
T ss_pred eeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCC---cchhhccc--------eeeeec
Confidence 4455566677878889999999999999999999999999999999999999997 77654331 235788
Q ss_pred EecCC--CCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCC
Q 002833 250 ISQHD--LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGL 327 (875)
Q Consensus 250 v~Q~d--~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL 327 (875)
..|+. .+-.+-|.-|.|.-... . | .......|-.+||
T Consensus 655 FdQh~~E~L~~Eetp~EyLqr~FN---l--------------------p------------------yq~ARK~LG~fGL 693 (807)
T KOG0066|consen 655 FDQHANEALNGEETPVEYLQRKFN---L--------------------P------------------YQEARKQLGTFGL 693 (807)
T ss_pred hhhhhHHhhccccCHHHHHHHhcC---C--------------------C------------------hHHHHHHhhhhhh
Confidence 88763 33344455555531110 0 0 0012345778999
Q ss_pred CccccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhH
Q 002833 328 DICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPET 407 (875)
Q Consensus 328 ~~~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei 407 (875)
...++|+- +..||||||-||++|+.-++.|+||+|||||++||..+...+.+.|++. ...||+..|... -+
T Consensus 694 ~sHAHTik----ikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney----~GgVi~VsHDeR-Li 764 (807)
T KOG0066|consen 694 ASHAHTIK----IKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY----NGGVIMVSHDER-LI 764 (807)
T ss_pred hhccceEe----eeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc----cCcEEEEecccc-ee
Confidence 98888863 4569999999999999999999999999999999999999999888875 345555555433 23
Q ss_pred HhhcCeEEEEeC
Q 002833 408 YDLFDDIILLSE 419 (875)
Q Consensus 408 ~~lfD~vilL~~ 419 (875)
.+---.+.|+.+
T Consensus 765 ~eT~C~LwVvE~ 776 (807)
T KOG0066|consen 765 VETDCNLWVVEN 776 (807)
T ss_pred eecCceEEEEcc
Confidence 232334444443
No 396
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.74 E-value=5.2e-17 Score=183.76 Aligned_cols=189 Identities=17% Similarity=0.251 Sum_probs=134.9
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCH
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 262 (875)
+..+++|+|+.|..|+-++|.||||||||+||++|+|+-+.. +|+|+--...- .+.+-|+||.+..- .-|.
T Consensus 447 g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~---~G~l~k~~~~~-----~~~lfflPQrPYmt-~GTL 517 (659)
T KOG0060|consen 447 GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPST---GGKLTKPTDGG-----PKDLFFLPQRPYMT-LGTL 517 (659)
T ss_pred CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccC---CCeEEecccCC-----CCceEEecCCCCcc-ccch
Confidence 445889999999999999999999999999999999998764 89887543221 14588999987643 3488
Q ss_pred HHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccc------ccccc
Q 002833 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICA------DTMVG 336 (875)
Q Consensus 263 ~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~------dt~vg 336 (875)
||-+-|..+.-.+. .....|.++ ..+|+.++|.|.. |+.+-
T Consensus 518 RdQvIYP~~~~~~~---------------~~~~~d~~i------------------~r~Le~v~L~hl~~r~ggld~~~~ 564 (659)
T KOG0060|consen 518 RDQVIYPLKAEDMD---------------SKSASDEDI------------------LRILENVQLGHLLEREGGLDQQVD 564 (659)
T ss_pred hheeeccCcccccc---------------ccCCCHHHH------------------HHHHHHhhhhhHHHHhCCCCchhh
Confidence 99888763211000 000112222 2233333333322 22222
Q ss_pred CccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEE
Q 002833 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (875)
Q Consensus 337 ~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vil 416 (875)
-+....||+||+||++.||.+..+|++-+|||.||++|......+.+.+|+ .|+|.|-+-|.++ ..+.=|.++-
T Consensus 565 ~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~----~giT~iSVgHRkS--L~kfHd~~L~ 638 (659)
T KOG0060|consen 565 WDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE----MGITFISVGHRKS--LWKFHDYVLR 638 (659)
T ss_pred ccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH----cCCeEEEeccHHH--HHhhhhEEEE
Confidence 234456999999999999999999999999999999999999888888876 4778777766554 5555677777
Q ss_pred EeC
Q 002833 417 LSE 419 (875)
Q Consensus 417 L~~ 419 (875)
|+.
T Consensus 639 ~~g 641 (659)
T KOG0060|consen 639 MDG 641 (659)
T ss_pred ecC
Confidence 764
No 397
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.74 E-value=1.9e-17 Score=173.26 Aligned_cols=81 Identities=15% Similarity=0.220 Sum_probs=65.3
Q ss_pred CCCCCHHHHHHHHHHHHH----hcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCC-cEEEEeecCCchhHHhhcC--
Q 002833 340 RRGISGGQKKRVTTGEML----VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILD-VTMIVALLQPAPETYDLFD-- 412 (875)
Q Consensus 340 ~rgLSGGerkRVsIA~aL----v~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~-~tviisi~q~~~ei~~lfD-- 412 (875)
+..||||||||+.++.+| +.+|+++++||||+|||+.++..+.+.|+++++..+ .++|++.|+.. +..+.+|
T Consensus 124 ~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~-~~~~~~~~~ 202 (213)
T cd03277 124 PHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLL-PGLNYHEKM 202 (213)
T ss_pred hhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhc-cCCcccCce
Confidence 346999999998887654 589999999999999999999999999999876424 46777776643 4456665
Q ss_pred eEEEEeCCe
Q 002833 413 DIILLSEGQ 421 (875)
Q Consensus 413 ~vilL~~G~ 421 (875)
+|++|++|+
T Consensus 203 ~v~~l~~g~ 211 (213)
T cd03277 203 TVLCVYNGP 211 (213)
T ss_pred EEEEEecCc
Confidence 788888886
No 398
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=1.5e-17 Score=186.02 Aligned_cols=191 Identities=21% Similarity=0.266 Sum_probs=125.5
Q ss_pred cccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecC-CCCCCCC
Q 002833 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQH-DLHHGEM 260 (875)
Q Consensus 182 ~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~-d~~~~~l 260 (875)
+.+.+|++-++.+..|+.++|+||||+||||||++|+. |.|.. -+..+. ..-.|++-. +.+..+
T Consensus 91 G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~---------~~v~~--f~veqE---~~g~~t~~~~~~l~~D- 155 (582)
T KOG0062|consen 91 GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN---------GQVSG--FHVEQE---VRGDDTEALQSVLESD- 155 (582)
T ss_pred cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh---------cCcCc--cCchhh---eeccchHHHhhhhhcc-
Confidence 35679999999999999999999999999999999985 22221 111110 001122211 111122
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccC
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (875)
|.++.+... +++-. .+.+...+.+.+|.-+|.+.-.-. ...
T Consensus 156 ~~~~dfl~~-------------------e~~l~----------------~~~~l~ei~~~~L~glGFt~emq~----~pt 196 (582)
T KOG0062|consen 156 TERLDFLAE-------------------EKELL----------------AGLTLEEIYDKILAGLGFTPEMQL----QPT 196 (582)
T ss_pred HHHHHHHHh-------------------hhhhh----------------ccchHHHHHHHHHHhCCCCHHHHh----ccc
Confidence 223322211 00000 000112233447888888654322 224
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCC
Q 002833 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (875)
Q Consensus 341 rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G 420 (875)
+.+|||-|-|+++||||..+|++|+|||||+.||..+...+.+.|..+ ..|++++. |++.-.=..|.+||.+++-
T Consensus 197 ~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~----~~T~liVS-HDr~FLn~V~tdIIH~~~~ 271 (582)
T KOG0062|consen 197 KSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW----KITSLIVS-HDRNFLNTVCTDIIHLENL 271 (582)
T ss_pred cccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC----CceEEEEe-ccHHHHHHHHHHHHHHhhh
Confidence 569999999999999999999999999999999999999999999874 45777664 5565666678888888776
Q ss_pred eE-EEecChhhH
Q 002833 421 QI-VYQGPRDNV 431 (875)
Q Consensus 421 ~i-v~~Gp~~~~ 431 (875)
++ .|.|+.++.
T Consensus 272 kL~~YkGN~~~F 283 (582)
T KOG0062|consen 272 KLDYYKGNYSQF 283 (582)
T ss_pred hhhhhcCcHHHH
Confidence 66 366765544
No 399
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=3.5e-17 Score=183.06 Aligned_cols=194 Identities=21% Similarity=0.258 Sum_probs=143.9
Q ss_pred hccccCCccccc-ccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEe
Q 002833 173 LLHLVPSKKRSV-RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYIS 251 (875)
Q Consensus 173 ~~~~~~~~~~~~-~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~ 251 (875)
+..+...|.... +++.+++..++.-.-.+++|+||+||||+||++.|.+.|. +|-+.++ ++..++|..
T Consensus 365 i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~---rgi~~~~--------~r~ri~~f~ 433 (582)
T KOG0062|consen 365 ISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPT---RGIVGRH--------PRLRIKYFA 433 (582)
T ss_pred EEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcc---cceeeec--------ccceecchh
Confidence 333434454444 7999999999999999999999999999999999998875 7777654 356799999
Q ss_pred cCCCCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccc
Q 002833 252 QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICA 331 (875)
Q Consensus 252 Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~ 331 (875)
|+..-+-.+.|-+- ++..++.. | . ..+....-+..+||+.-.
T Consensus 434 Qhhvd~l~~~v~~v-d~~~~~~p-G-----------------------------------~-~~ee~r~hl~~~Gl~g~l 475 (582)
T KOG0062|consen 434 QHHVDFLDKNVNAV-DFMEKSFP-G-----------------------------------K-TEEEIRRHLGSFGLSGEL 475 (582)
T ss_pred HhhhhHHHHHhHHH-HHHHHhCC-C-----------------------------------C-CHHHHHHHHHhcCCCchh
Confidence 98554444444432 22222221 0 0 111234457789987432
Q ss_pred cccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhc
Q 002833 332 DTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF 411 (875)
Q Consensus 332 dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lf 411 (875)
....+.+||||||-||++|.+...+|.+|+|||||+.||-.+-..+.+.|+.+. | .||++. |...-+-.+|
T Consensus 476 ----a~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~---G-GVv~VS-Hd~~fi~~~c 546 (582)
T KOG0062|consen 476 ----ALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFN---G-GVVLVS-HDEEFISSLC 546 (582)
T ss_pred ----hhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcC---C-cEEEEE-CcHHHHhhcC
Confidence 222356799999999999999999999999999999999999999999999862 4 444443 5566778899
Q ss_pred CeEEEEeCCeEEE
Q 002833 412 DDIILLSEGQIVY 424 (875)
Q Consensus 412 D~vilL~~G~iv~ 424 (875)
+.+.+..+|++.-
T Consensus 547 ~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 547 KELWVVEDGKVTP 559 (582)
T ss_pred ceeEEEcCCcEEe
Confidence 9999999999963
No 400
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.71 E-value=2.8e-17 Score=181.22 Aligned_cols=95 Identities=27% Similarity=0.368 Sum_probs=82.5
Q ss_pred HHHHHHHHhCCCccccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q 002833 317 VTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTM 396 (875)
Q Consensus 317 ~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tv 396 (875)
..+++.+.|+|+...|.-|.+ |||||-|||+||.+++.+++++++|||||-||...+....+.+|++++. +++|
T Consensus 193 ~~devve~l~L~nvl~r~v~~-----LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~-~k~V 266 (591)
T COG1245 193 KFDEVVERLGLENVLDRDVSE-----LSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAED-GKYV 266 (591)
T ss_pred cHHHHHHHhcchhhhhhhhhh-----cCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhcc-CCeE
Confidence 568899999999999888775 9999999999999999999999999999999999999999999999974 7888
Q ss_pred EEeecCCchhHHh-hcCeEEEEeC
Q 002833 397 IVALLQPAPETYD-LFDDIILLSE 419 (875)
Q Consensus 397 iisi~q~~~ei~~-lfD~vilL~~ 419 (875)
++.-|+. .+.+ ++|-|.++..
T Consensus 267 iVVEHDL--avLD~lsD~vhI~YG 288 (591)
T COG1245 267 IVVEHDL--AVLDYLSDFVHILYG 288 (591)
T ss_pred EEEechH--HHHHHhhheeEEEec
Confidence 8876543 3555 5777777653
No 401
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.69 E-value=3.7e-16 Score=159.07 Aligned_cols=74 Identities=23% Similarity=0.367 Sum_probs=66.5
Q ss_pred CCHHHHHHHHHHHHHh----cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEe
Q 002833 343 ISGGQKKRVTTGEMLV----GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (875)
Q Consensus 343 LSGGerkRVsIA~aLv----~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~ 418 (875)
||||||||+++|++|+ .+|+++++|||++|||+.....+.+.|+++++. +.++|++.|.+ +....+|+++.+.
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~-g~tiIiiSH~~--~~~~~adrvi~i~ 171 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKH-TSQFIVITLKK--EMFENADKLIGVL 171 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEECCH--HHHhhCCeEEEEE
Confidence 9999999999999996 699999999999999999999999999998764 78888888765 4567899999997
Q ss_pred C
Q 002833 419 E 419 (875)
Q Consensus 419 ~ 419 (875)
.
T Consensus 172 ~ 172 (178)
T cd03239 172 F 172 (178)
T ss_pred E
Confidence 5
No 402
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.69 E-value=3.2e-16 Score=170.89 Aligned_cols=189 Identities=26% Similarity=0.371 Sum_probs=137.8
Q ss_pred cccccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC-----CCCccEEEECCEeCCCCccCceEEEEecC-
Q 002833 180 KKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD-----LRASGKITYCGHELNEFVPQRTCAYISQH- 253 (875)
Q Consensus 180 ~~~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~-----~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~- 253 (875)
+.....+|+|||+.|+||++++|+|+|||||||||++|+|..... -..+|.|.+--.. ..+.++-.
T Consensus 392 r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt--------~~a~iPge~ 463 (593)
T COG2401 392 RVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT--------VSALIPGEY 463 (593)
T ss_pred eeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc--------hhhccCccc
Confidence 344567999999999999999999999999999999999975321 1136666552211 23444433
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccc
Q 002833 254 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (875)
Q Consensus 254 d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 333 (875)
+.-|..-|+.|.+.-- . .|. ....++|+..||.+-.
T Consensus 464 Ep~f~~~tilehl~s~-----t--------------------GD~-----------------~~AveILnraGlsDAv-- 499 (593)
T COG2401 464 EPEFGEVTILEHLRSK-----T--------------------GDL-----------------NAAVEILNRAGLSDAV-- 499 (593)
T ss_pred ccccCchhHHHHHhhc-----c--------------------Cch-----------------hHHHHHHHhhccchhh--
Confidence 2334445666655210 0 111 1234578888886432
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHh-h-c
Q 002833 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD-L-F 411 (875)
Q Consensus 334 ~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~-l-f 411 (875)
.--...+.||-|||.|+.||.++...|.+++.||--+.||..|+..+.+.|.+++++.+.|.+++.|+| ++.+ | =
T Consensus 500 -lyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrp--Ev~~AL~P 576 (593)
T COG2401 500 -LYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRP--EVGNALRP 576 (593)
T ss_pred -hhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCH--HHHhccCC
Confidence 222334569999999999999999999999999999999999999999999999999999999998876 4444 4 5
Q ss_pred CeEEEEeCCeEE
Q 002833 412 DDIILLSEGQIV 423 (875)
Q Consensus 412 D~vilL~~G~iv 423 (875)
|+++++.=|.+.
T Consensus 577 D~li~vgYg~v~ 588 (593)
T COG2401 577 DTLILVGYGKVP 588 (593)
T ss_pred ceeEEeeccccc
Confidence 888888766553
No 403
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.66 E-value=2.5e-16 Score=175.89 Aligned_cols=172 Identities=20% Similarity=0.337 Sum_probs=121.2
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHH
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (875)
..+...+++.|+||--++|+||||||||+|.++|+|+.+- |+|+-.. ++...+-|+||.+..- --|.|
T Consensus 495 ~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPv---------y~g~L~~--P~~~~mFYIPQRPYms-~gtlR 562 (728)
T KOG0064|consen 495 DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPV---------YNGLLSI--PRPNNIFYIPQRPYMS-GGTLR 562 (728)
T ss_pred ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcc---------cCCeeec--CCCcceEeccCCCccC-cCccc
Confidence 3478999999999999999999999999999999999864 4554322 2345589999987654 44777
Q ss_pred HHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCc----c
Q 002833 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE----M 339 (875)
Q Consensus 264 EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~----~ 339 (875)
|-+-|.- +.. ++.++ + -+|.|. ..+|+++.|+|.+..-.|=+ .
T Consensus 563 DQIIYPd------S~e----~~~~k----g-~~d~dL------------------~~iL~~v~L~~i~qr~~g~da~~dW 609 (728)
T KOG0064|consen 563 DQIIYPD------SSE----QMKRK----G-YTDQDL------------------EAILDIVHLEHILQREGGWDAVRDW 609 (728)
T ss_pred ceeecCC------cHH----HHHhc----C-CCHHHH------------------HHHHHHhhHHHHHHhccChhhhccH
Confidence 7665531 111 11111 1 122222 33444444444433333211 1
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCc
Q 002833 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPA 404 (875)
Q Consensus 340 ~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~ 404 (875)
..-||||||||+.+||++..+|+.-+|||-|++.-......|.+..+. .|.+.+-..|+|+
T Consensus 610 kd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~----~gi~llsithrps 670 (728)
T KOG0064|consen 610 KDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD----AGISLLSITHRPS 670 (728)
T ss_pred HhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh----cCceEEEeecCcc
Confidence 234999999999999999999999999999999988888777776665 5888888888886
No 404
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.65 E-value=1.8e-16 Score=166.88 Aligned_cols=154 Identities=16% Similarity=0.177 Sum_probs=112.5
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEE-EEecCCCCCCCCC
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCA-YISQHDLHHGEMT 261 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~-yv~Q~d~~~~~lT 261 (875)
...+.+|+++.+.+|++++|.|||||||||||+.++=.. + -.++| ||+.+...++
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~-----------~----------la~~g~~vpa~~~~~~--- 71 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIV-----------L----------MAQIGCFVPCDSADIP--- 71 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHH-----------H----------HHHhCCCcCcccEEEe---
Confidence 346899999999999999999999999999999987210 0 00111 3333211110
Q ss_pred HHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCC
Q 002833 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (875)
Q Consensus 262 V~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (875)
..+.+++.+|+.+.. .+
T Consensus 72 -------------------------------------------------------~~~~il~~~~l~d~~--------~~ 88 (222)
T cd03285 72 -------------------------------------------------------IVDCILARVGASDSQ--------LK 88 (222)
T ss_pred -------------------------------------------------------ccceeEeeeccccch--------hc
Confidence 122344455554322 34
Q ss_pred CCCHHHHHHHHHHHHH--hcCCcEEEEeCC---CCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEE
Q 002833 342 GISGGQKKRVTTGEML--VGTANVLYMDEI---STGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (875)
Q Consensus 342 gLSGGerkRVsIA~aL--v~~p~iLlLDEP---TsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vil 416 (875)
++|.|+++++.+++++ +.+|++++|||| |++||....... .++.+.+..+.++++++|. .++.+++|++..
T Consensus 89 ~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~--il~~l~~~~~~~vlisTH~--~el~~~~~~~~~ 164 (222)
T cd03285 89 GVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWA--IAEYIATQIKCFCLFATHF--HELTALADEVPN 164 (222)
T ss_pred CcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHH--HHHHHHhcCCCeEEEEech--HHHHHHhhcCCC
Confidence 6999999999999999 899999999999 899999887543 3344444347889888874 688999999999
Q ss_pred EeCCeEEEecC
Q 002833 417 LSEGQIVYQGP 427 (875)
Q Consensus 417 L~~G~iv~~Gp 427 (875)
+.+|++.+.+.
T Consensus 165 i~~g~~~~~~~ 175 (222)
T cd03285 165 VKNLHVTALTD 175 (222)
T ss_pred eEEEEEEEEEe
Confidence 99999987764
No 405
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.64 E-value=2.3e-15 Score=163.77 Aligned_cols=76 Identities=21% Similarity=0.274 Sum_probs=67.1
Q ss_pred CCCHHHHHHHHHHHHHhc----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEE
Q 002833 342 GISGGQKKRVTTGEMLVG----TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (875)
Q Consensus 342 gLSGGerkRVsIA~aLv~----~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL 417 (875)
.|||||+||+++|++++. +|+++++||||+|||+.+...+.+.|+++.+ +.|+|++.|+|. +.+.+|++++|
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~--~~tii~isH~~~--~~~~~d~~~~l 245 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR--SHQVLCITHLPQ--VAAMADNHFLV 245 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEechHH--HHHhcCcEEEE
Confidence 499999999999987654 9999999999999999999999999999864 678888888764 56899999999
Q ss_pred eCCe
Q 002833 418 SEGQ 421 (875)
Q Consensus 418 ~~G~ 421 (875)
.+|.
T Consensus 246 ~~~~ 249 (276)
T cd03241 246 EKEV 249 (276)
T ss_pred EEec
Confidence 8763
No 406
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.64 E-value=7e-16 Score=154.64 Aligned_cols=74 Identities=24% Similarity=0.352 Sum_probs=65.8
Q ss_pred CCHHHHHHHHHHHHHhc----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEe
Q 002833 343 ISGGQKKRVTTGEMLVG----TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (875)
Q Consensus 343 LSGGerkRVsIA~aLv~----~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~ 418 (875)
+|+||+||++++++|+. +|+++++|||++|+|+.....+.+.+.+..+. +.+++++.|.+ +..+.+|+++.|.
T Consensus 78 lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~vii~TH~~--~~~~~~d~~~~l~ 154 (162)
T cd03227 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITHLP--ELAELADKLIHIK 154 (162)
T ss_pred ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCH--HHHHhhhhEEEEE
Confidence 99999999999999986 78999999999999999999999999998765 78888887765 4567899999986
Q ss_pred C
Q 002833 419 E 419 (875)
Q Consensus 419 ~ 419 (875)
.
T Consensus 155 ~ 155 (162)
T cd03227 155 K 155 (162)
T ss_pred E
Confidence 4
No 407
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.63 E-value=7.6e-16 Score=159.59 Aligned_cols=147 Identities=14% Similarity=0.099 Sum_probs=101.9
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHH
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (875)
..+++|+++.. |++++|+||||||||||||+|+|... +...|.++.. + .+++|.+.+++.+||.
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~--------l~~~G~~v~a----~--~~~~q~~~l~~~~~~~ 77 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI--------LAQAGAPVCA----S--SFELPPVKIFTSIRVS 77 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH--------HHHcCCEEec----C--ccCcccceEEEeccch
Confidence 45888887664 79999999999999999999998542 1224444321 1 3566778889999999
Q ss_pred HHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCC
Q 002833 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (875)
Q Consensus 264 EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (875)
|++.++.... +.+ ..++..+|+.+++
T Consensus 78 d~l~~~~s~~-------------~~e-------------------------~~~~~~iL~~~~~---------------- 103 (199)
T cd03283 78 DDLRDGISYF-------------YAE-------------------------LRRLKEIVEKAKK---------------- 103 (199)
T ss_pred hccccccChH-------------HHH-------------------------HHHHHHHHHhccC----------------
Confidence 9997753210 000 0123455665552
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHHhCCcEEEEeecCCchhHHhh--cCeEEEE
Q 002833 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICK-FLKQMVHILDVTMIVALLQPAPETYDL--FDDIILL 417 (875)
Q Consensus 344 SGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~-~L~~l~~~~~~tviisi~q~~~ei~~l--fD~vilL 417 (875)
.+|+++++|||++|||+.....+.. .++.+.+ .+.++|++.|++. .+..+ .++|-.+
T Consensus 104 ---------------~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~-~~~tiiivTH~~~-~~~~~~~~~~v~~~ 163 (199)
T cd03283 104 ---------------GEPVLFLLDEIFKGTNSRERQAASAAVLKFLKN-KNTIGIISTHDLE-LADLLDLDSAVRNY 163 (199)
T ss_pred ---------------CCCeEEEEecccCCCCHHHHHHHHHHHHHHHHH-CCCEEEEEcCcHH-HHHhhhcCCCeEEE
Confidence 6899999999999999999988764 6788765 4888888887764 33332 4455443
No 408
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.62 E-value=1.7e-14 Score=168.91 Aligned_cols=120 Identities=25% Similarity=0.330 Sum_probs=96.2
Q ss_pred HHHHHhCCCccccccccCccCCCCCHHHHHHHHHHHHHhcCC---cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q 002833 320 YVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA---NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTM 396 (875)
Q Consensus 320 ~iL~~lgL~~~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p---~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tv 396 (875)
+.|..+||.-. .+| +..-.|||||.|||-+|..|..+. .+++|||||+||-.....++++.|.++.+ .|-||
T Consensus 804 qtL~dVGLgYi---~LG-QpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd-~GnTV 878 (935)
T COG0178 804 QTLVDVGLGYI---KLG-QPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVD-KGNTV 878 (935)
T ss_pred HHHHHcCcceE---ecC-CccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHh-CCCEE
Confidence 35666777532 244 344579999999999999998877 89999999999999999999999999998 58888
Q ss_pred EEeecCCchhHHhhcCeEEEEe------CCeEEEecChhhHHHHHHHcCCCCCCCCCHHHHHHHh
Q 002833 397 IVALLQPAPETYDLFDDIILLS------EGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEV 455 (875)
Q Consensus 397 iisi~q~~~ei~~lfD~vilL~------~G~iv~~Gp~~~~~~~F~~~Gf~~p~~~~~adfl~~v 455 (875)
|+.-|. . ++.+.+|.|+=|- .|+||..|.|+++.+ +| ..-++.||..+
T Consensus 879 iVIEHN-L-dVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~--------~~-~S~Tg~yLk~~ 932 (935)
T COG0178 879 IVIEHN-L-DVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK--------VK-ASYTGKYLKKY 932 (935)
T ss_pred EEEecc-c-ceEeecCEEEEcCCCCCCCCceEEEecCHHHHHh--------Cc-cchhHHHHHHH
Confidence 886554 3 6888999999983 589999999999964 44 44566676543
No 409
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.59 E-value=1.3e-14 Score=179.04 Aligned_cols=104 Identities=24% Similarity=0.354 Sum_probs=92.4
Q ss_pred HHHHhCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHhcCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEE
Q 002833 321 VLKILGLDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLVGTA--NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMI 397 (875)
Q Consensus 321 iL~~lgL~~~-~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p--~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tvi 397 (875)
.|+.+||.+. .|+.+++ |||||||||.||++|..+| ++++|||||+|||+..+.++.+.|+++.+ .|.|+|
T Consensus 472 ~L~~vGL~~l~l~r~~~~-----LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~-~G~TVI 545 (943)
T PRK00349 472 FLVDVGLDYLTLSRSAGT-----LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRD-LGNTLI 545 (943)
T ss_pred HhhccccCCCCCCCchhh-----CCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHh-CCCEEE
Confidence 6888999865 6777764 9999999999999999987 99999999999999999999999999975 588999
Q ss_pred EeecCCchhHHhhcCeEEEE------eCCeEEEecChhhHH
Q 002833 398 VALLQPAPETYDLFDDIILL------SEGQIVYQGPRDNVL 432 (875)
Q Consensus 398 isi~q~~~ei~~lfD~vilL------~~G~iv~~Gp~~~~~ 432 (875)
++.|++. ++ ..+|+|++| .+|++++.|+++++.
T Consensus 546 vVeH~~~-~i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~ 584 (943)
T PRK00349 546 VVEHDED-TI-RAADYIVDIGPGAGVHGGEVVASGTPEEIM 584 (943)
T ss_pred EEeCCHH-HH-HhCCEEEEeccccCCCCCEEeeccCHHHHh
Confidence 9887754 44 569999999 999999999998874
No 410
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.58 E-value=2e-14 Score=177.14 Aligned_cols=104 Identities=25% Similarity=0.354 Sum_probs=90.2
Q ss_pred HHHHhCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHhcCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEE
Q 002833 321 VLKILGLDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLVGTA--NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMI 397 (875)
Q Consensus 321 iL~~lgL~~~-~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p--~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tvi 397 (875)
.|..+||... .+..+. .|||||+|||.||++|+.+| ++++|||||+|||+.....+.+.|+++.+ .|.|+|
T Consensus 470 ~L~~vgL~~l~l~r~~~-----tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~-~G~TVI 543 (924)
T TIGR00630 470 FLIDVGLDYLTLSRAAG-----TLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRD-LGNTVI 543 (924)
T ss_pred hHhhccccccccCCCcC-----cCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHh-CCCEEE
Confidence 4677898754 565554 59999999999999999986 89999999999999999999999999976 488999
Q ss_pred EeecCCchhHHhhcCeEEEE------eCCeEEEecChhhHH
Q 002833 398 VALLQPAPETYDLFDDIILL------SEGQIVYQGPRDNVL 432 (875)
Q Consensus 398 isi~q~~~ei~~lfD~vilL------~~G~iv~~Gp~~~~~ 432 (875)
++.|++. . ...||+|++| ++|+|++.|+++++.
T Consensus 544 vVeHd~~-~-i~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 544 VVEHDEE-T-IRAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred EEECCHH-H-HhhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 9887753 4 4689999999 899999999998763
No 411
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.57 E-value=5.5e-15 Score=153.44 Aligned_cols=84 Identities=12% Similarity=0.092 Sum_probs=66.5
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHH-HHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCe
Q 002833 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKF-LKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (875)
Q Consensus 343 LSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~-L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~ 421 (875)
++++++ |+..+.+++.+|+++++|||++|||+.....+... ++.+.+ .+.++|++.|. .++.+.+|++..+..|+
T Consensus 92 ~~~e~~-~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~-~~~~vi~~tH~--~~~~~~~~~~~~l~~~~ 167 (202)
T cd03243 92 FMAELL-ELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLE-KGCRTLFATHF--HELADLPEQVPGVKNLH 167 (202)
T ss_pred HHHHHH-HHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCeEEEECCh--HHHHHHhhcCCCeEEEE
Confidence 555555 56666778899999999999999999988888654 565554 57888888775 46788899999999999
Q ss_pred EEEecChhh
Q 002833 422 IVYQGPRDN 430 (875)
Q Consensus 422 iv~~Gp~~~ 430 (875)
+..++...+
T Consensus 168 ~~~~~~~~~ 176 (202)
T cd03243 168 MEELITTGG 176 (202)
T ss_pred EEEEecCCe
Confidence 998886533
No 412
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.56 E-value=6.9e-14 Score=151.75 Aligned_cols=77 Identities=21% Similarity=0.253 Sum_probs=62.1
Q ss_pred CCCCCHHHHHHHHHHHHHh---------cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhh
Q 002833 340 RRGISGGQKKRVTTGEMLV---------GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL 410 (875)
Q Consensus 340 ~rgLSGGerkRVsIA~aLv---------~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~l 410 (875)
..-+|+||||++++|++|+ .+|+++++||||++||+.....+.+.|+++. .+ +++.|+. +++.++
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~----q~-ii~~~~~-~~~~~~ 254 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV----QT-FVTTTDL-ADFDAL 254 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC----CE-EEEeCCc-hhccch
Confidence 4458999999999999875 7999999999999999999999999998742 34 4444443 355566
Q ss_pred c---CeEEEEeCCeE
Q 002833 411 F---DDIILLSEGQI 422 (875)
Q Consensus 411 f---D~vilL~~G~i 422 (875)
+ ++++.|++|++
T Consensus 255 ~~~~~~i~~l~~g~i 269 (270)
T cd03242 255 WLRRAQIFRVDAGTL 269 (270)
T ss_pred hccCccEEEEeCcEE
Confidence 6 78999999986
No 413
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=2.7e-14 Score=156.14 Aligned_cols=216 Identities=21% Similarity=0.231 Sum_probs=139.1
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCH
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 262 (875)
.+.++.|-|+.|-.|+.++|+||||-||||||+.|+.+--. +.+.-.+-|+.|+-..- .-|.
T Consensus 276 Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~Rala-----------------IPpnIDvLlCEQEvvad-~t~A 337 (807)
T KOG0066|consen 276 GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALA-----------------IPPNIDVLLCEQEVVAD-STSA 337 (807)
T ss_pred cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhcc-----------------CCCCCceEeeeeeeeec-CcHH
Confidence 45688999999999999999999999999999999986321 01112244555542211 1133
Q ss_pred HHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHH-----HHHHhcchhhhHHHHHHHHhCCCccccccccC
Q 002833 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMK-----AVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (875)
Q Consensus 263 ~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (875)
-+++.-+- ..|..++.+-.+-+.+. ...+....+-++ ..+......+.+...+|.-||.+.-....+
T Consensus 338 i~tvl~aD-----~kRl~lLeee~~L~~q~-e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rP-- 409 (807)
T KOG0066|consen 338 IDTVLKAD-----KKRLALLEEEAKLMSQI-EEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERP-- 409 (807)
T ss_pred HHHHHHhh-----HHHHHHHHHHHHHHHHH-HcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCC--
Confidence 33332221 11223333322211110 011222221111 122223334456777899999876443322
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEE
Q 002833 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (875)
Q Consensus 338 ~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL 417 (875)
....|||-|-||++||||...|.+|.|||||+.||-.....+-+.|+.+. +|.+|..|... -.-..|.+||.|
T Consensus 410 --t~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk----KTLLIVSHDQg-FLD~VCtdIIHL 482 (807)
T KOG0066|consen 410 --TTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK----KTLLIVSHDQG-FLDSVCTDIIHL 482 (807)
T ss_pred --ccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh----heeEEEecccc-hHHHHHHHHhhh
Confidence 23599999999999999999999999999999999999999999999874 47777666543 556789999999
Q ss_pred eCCeEE-EecChhhH
Q 002833 418 SEGQIV-YQGPRDNV 431 (875)
Q Consensus 418 ~~G~iv-~~Gp~~~~ 431 (875)
++-++- |.|...-.
T Consensus 483 D~qkLhyYrGNY~~F 497 (807)
T KOG0066|consen 483 DNQKLHYYRGNYTLF 497 (807)
T ss_pred hhhhhhhhcchHHHH
Confidence 988775 44655433
No 414
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.50 E-value=1.7e-13 Score=175.95 Aligned_cols=103 Identities=22% Similarity=0.372 Sum_probs=91.4
Q ss_pred HHHHhCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHhcCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEE
Q 002833 321 VLKILGLDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLVGTA--NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMI 397 (875)
Q Consensus 321 iL~~lgL~~~-~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p--~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tvi 397 (875)
.|..+||.+. .|+.++ .|||||+|||.||++|..+| ++++|||||+|||+.++..+.+.|+++++ .|.|+|
T Consensus 459 ~L~~vGL~~L~ldR~~~-----tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~-~G~TVI 532 (1809)
T PRK00635 459 ILIDLGLPYLTPERALA-----TLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRD-QGNTVL 532 (1809)
T ss_pred HHHhccccCCCCCCchh-----hCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHh-CCCEEE
Confidence 4567899876 577665 49999999999999999999 89999999999999999999999999986 488999
Q ss_pred EeecCCchhHHhhcCeEEEEe------CCeEEEecChhhH
Q 002833 398 VALLQPAPETYDLFDDIILLS------EGQIVYQGPRDNV 431 (875)
Q Consensus 398 isi~q~~~ei~~lfD~vilL~------~G~iv~~Gp~~~~ 431 (875)
++.|++. +.+.||+|++|. +|++++.|+++++
T Consensus 533 vVeHd~~--vi~~aDrVi~L~pGag~~gG~Iv~~G~~~ei 570 (1809)
T PRK00635 533 LVEHDEQ--MISLADRIIDIGPGAGIFGGEVLFNGSPREF 570 (1809)
T ss_pred EEeCcHH--HHHhCCEEEEEcCCcccCCCEEEEecCHHHH
Confidence 9888754 779999999996 7899999998876
No 415
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.49 E-value=1.7e-13 Score=150.43 Aligned_cols=182 Identities=30% Similarity=0.374 Sum_probs=132.5
Q ss_pred cccccccccceeEEEeCC-----eEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCC
Q 002833 180 KKRSVRILKDVSGIVKPS-----RMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHD 254 (875)
Q Consensus 180 ~~~~~~IL~~vs~~i~pG-----e~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d 254 (875)
|.+.+.-+.++.+.|+.| |++..||.||.|||||++.|||+++|+ ..|+|- .-.++|=+|.-
T Consensus 345 Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd--~~~e~p-----------~lnVSykpqki 411 (592)
T KOG0063|consen 345 YPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPD--EGGEIP-----------VLNVSYKPQKI 411 (592)
T ss_pred cCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCC--ccCccc-----------ccceecccccc
Confidence 344555678888888877 578999999999999999999999987 233332 22356666654
Q ss_pred CCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCcccccc
Q 002833 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTM 334 (875)
Q Consensus 255 ~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 334 (875)
.-=.+-|||+.+.--. +. +++ +...+..+++-|-+++..|.-
T Consensus 412 spK~~~tvR~ll~~kI----------------r~-------------ay~---------~pqF~~dvmkpL~ie~i~dqe 453 (592)
T KOG0063|consen 412 SPKREGTVRQLLHTKI----------------RD-------------AYM---------HPQFVNDVMKPLQIENIIDQE 453 (592)
T ss_pred CccccchHHHHHHHHh----------------Hh-------------hhc---------CHHHHHhhhhhhhHHHHHhHH
Confidence 4344558888774211 11 111 122345577777777777766
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeE
Q 002833 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (875)
Q Consensus 335 vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~v 414 (875)
|- +|||||.|||++|-.|-.++++++.|||++-||+..+...-+.++++.-..++|..+.-|.-.-.+| ++|||
T Consensus 454 vq-----~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTY-ladrv 527 (592)
T KOG0063|consen 454 VQ-----GLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATY-LADRV 527 (592)
T ss_pred hh-----cCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHh-hccee
Confidence 54 5999999999999999999999999999999999999999898888765457787777665443333 68998
Q ss_pred EEEe
Q 002833 415 ILLS 418 (875)
Q Consensus 415 ilL~ 418 (875)
++..
T Consensus 528 ivf~ 531 (592)
T KOG0063|consen 528 IVFE 531 (592)
T ss_pred EEEe
Confidence 8653
No 416
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.48 E-value=4.7e-12 Score=134.31 Aligned_cols=229 Identities=14% Similarity=0.037 Sum_probs=162.1
Q ss_pred HHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccccCCCCCcccchhH-----HHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 002833 530 REWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRY-----FGALFFSLLNIMFNGFAENAMTVLRLPI 604 (875)
Q Consensus 530 R~~~~~~Rd~~~~~~r~~~~ii~ali~gt~F~~~~~~~~~~~~~~~~-----~g~lFf~~~~~~~~~~~el~~~~~~rpv 604 (875)
||++...||+..+..-+++-+++.++.+.+|-..-.++. ..++..+ .|.+.++++..+.... .....+++.-
T Consensus 1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~-~~~g~~y~~fl~~G~~~~~~~~~~~~~~--~~~~~~~~~g 77 (236)
T TIGR01247 1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPM-IFGGVDYMTYLVPGIVAMTVFNMSFFSG--ISVIWDRQFG 77 (236)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccccccc-ccCCCcHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHhC
Confidence 788899999999999899988888888888754311110 0111122 3444444443332211 1111111111
Q ss_pred HHHHhhcCccchHHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCcchHHHHHHHHHHHHHHHhHHHHHHHHhhcCCcHH
Q 002833 605 FYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEV 684 (875)
Q Consensus 605 f~kqr~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Y~m~Gl~~~~~~Ff~f~l~l~l~~~~~~~lf~~iaa~~~~~~ 684 (875)
+.++-...=.+++.|.+++.+..++..+++.+++.++.|++.++++ ..++..+++.++...+..+++.++++..++..
T Consensus 78 ~~~~~~~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~ 155 (236)
T TIGR01247 78 FLKEILVAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSME 155 (236)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 1222112223578999999999999999999999999998877654 34666666667777788999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhhCHHHHHHHHHHHHhhcCCccccCCCCCCCccccccceeecccCc
Q 002833 685 ISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGF 764 (875)
Q Consensus 685 ~A~~~~~~~~~~~~lf~Gf~i~~~~ip~w~~W~~~isP~~Ya~~al~~NEf~~~~~~~~~~~~~~~~~~~G~~~L~~~g~ 764 (875)
.++.+.+++..+++.+||.+.|.+.+|+|++|+.|++|++|+.+++-..-. +.. +.
T Consensus 156 ~~~~i~~~~~~~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~~~~~~r~~~~-~~~-----------------------~~ 211 (236)
T TIGR01247 156 GFQIIMSMLMLPMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDGARYYLA-GVS-----------------------PT 211 (236)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHhCHHHHHHHHHHCcHHHHHHHHHHHHh-CCC-----------------------cc
Confidence 999999999999999999999999999999999999999999998543211 110 00
Q ss_pred cccCcchhhhHHHHHHHHHHHHHHHHH
Q 002833 765 STESNWYWIGVGALTGYSFLFNFLFIA 791 (875)
Q Consensus 765 ~~~~~~~w~~~giL~g~~~~f~~l~~l 791 (875)
..+|.++++|+.+.+++.++...
T Consensus 212 ----~~~~~~~~~l~~~~~~~~~l~~~ 234 (236)
T TIGR01247 212 ----FPLEQDLLVLTLLAVIFVGIAAV 234 (236)
T ss_pred ----cchHHHHHHHHHHHHHHHHHHHH
Confidence 12477889999999888877654
No 417
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.47 E-value=8.6e-14 Score=144.72 Aligned_cols=136 Identities=15% Similarity=0.141 Sum_probs=94.3
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCH
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 262 (875)
+..+.+|+++.+++|++++|+||||+||||||+++++..-- ++ .-.|| +...+.+++
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l-----a~---------------~G~~v---pa~~~~l~~ 71 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIM-----AQ---------------IGCFV---PAEYATLPI 71 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHH-----HH---------------cCCCc---chhhcCccC
Confidence 45699999999999999999999999999999999886411 11 01122 233455566
Q ss_pred HHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCC
Q 002833 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (875)
Q Consensus 263 ~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (875)
.|+|.... +..+..+.. ...
T Consensus 72 ~d~I~~~~-------------------------------------------------------~~~d~~~~~-----~S~ 91 (204)
T cd03282 72 FNRLLSRL-------------------------------------------------------SNDDSMERN-----LST 91 (204)
T ss_pred hhheeEec-------------------------------------------------------CCccccchh-----hhH
Confidence 66663321 111111111 224
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHH-HHHHHHHHhCCcEEEEeecCC
Q 002833 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQIC-KFLKQMVHILDVTMIVALLQP 403 (875)
Q Consensus 343 LSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~-~~L~~l~~~~~~tviisi~q~ 403 (875)
+|+|++|+ ..+-.++.+|++++||||++|+|+.....+. ..++.+.+ .+.++++++|..
T Consensus 92 fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~-~~~~~i~~TH~~ 151 (204)
T cd03282 92 FASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIK-KESTVFFATHFR 151 (204)
T ss_pred HHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECChH
Confidence 88888865 5556678999999999999999998866664 45666665 488999987754
No 418
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.46 E-value=1.7e-13 Score=143.87 Aligned_cols=159 Identities=12% Similarity=0.077 Sum_probs=105.1
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHH
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (875)
..+.+|+++..++ ++++|+||||||||||||.+++..-. |+ .|..+.. .+..++|+.| .++.+++.
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l-----~~---~g~~vp~--~~~~i~~~~~---i~~~~~~~ 83 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL-----AQ---IGSFVPA--SKAEIGVVDR---IFTRIGAS 83 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH-----hc---cCCeecc--ccceecceee---EeccCCch
Confidence 4589999999988 99999999999999999999875321 11 1211111 1345677755 46777887
Q ss_pred HHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCC
Q 002833 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (875)
Q Consensus 264 EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (875)
|++..+... .
T Consensus 84 ~~ls~g~s~----------------------------------------------------------------------f 93 (216)
T cd03284 84 DDLAGGRST----------------------------------------------------------------------F 93 (216)
T ss_pred hhhccCcch----------------------------------------------------------------------H
Confidence 777543100 0
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEeCC---CCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCC
Q 002833 344 SGGQKKRVTTGEMLVGTANVLYMDEI---STGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (875)
Q Consensus 344 SGGerkRVsIA~aLv~~p~iLlLDEP---TsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G 420 (875)
..|+++++-+...+.+|++++|||| |++||.... ....++.+.+..+.++|+++|.+ ++.+++|++.-+.+|
T Consensus 94 -~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~~~ 168 (216)
T cd03284 94 -MVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKLPRVKNF 168 (216)
T ss_pred -HHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcCCCeEEE
Confidence 0122233333333579999999999 888887652 12234444433378888888764 778899998888889
Q ss_pred eEEEecChhhH
Q 002833 421 QIVYQGPRDNV 431 (875)
Q Consensus 421 ~iv~~Gp~~~~ 431 (875)
++...+..+++
T Consensus 169 ~~~~~~~~~~l 179 (216)
T cd03284 169 HVAVKEKGGGV 179 (216)
T ss_pred EEEEEeeCCeE
Confidence 98877765554
No 419
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.45 E-value=2.8e-13 Score=146.31 Aligned_cols=140 Identities=22% Similarity=0.264 Sum_probs=94.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc----CceEEEEecCCCCCCCCCHHHHHHHhhhhc
Q 002833 198 RMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGEMTVRETLDFSGRCL 273 (875)
Q Consensus 198 e~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~lTV~EtL~f~a~~~ 273 (875)
.-++|+||||||||||+++|+|.++++ +|+|.++|+++..... .+.+++++|++ +.+.++|.++..-+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~---~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~k~---- 183 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTG---ISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCPKA---- 183 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCC---CceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccchHH----
Confidence 578999999999999999999999987 9999999998753321 13456777754 33444554432100
Q ss_pred CCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCCCHHHHHHHHH
Q 002833 274 GVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTT 353 (875)
Q Consensus 274 ~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGerkRVsI 353 (875)
.| -.
T Consensus 184 -----------------------------------------------------------------------~~-----~~ 187 (270)
T TIGR02858 184 -----------------------------------------------------------------------EG-----MM 187 (270)
T ss_pred -----------------------------------------------------------------------HH-----HH
Confidence 00 01
Q ss_pred HHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchh-H-----------HhhcCeEEEEeCCe
Q 002833 354 GEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE-T-----------YDLFDDIILLSEGQ 421 (875)
Q Consensus 354 A~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~e-i-----------~~lfD~vilL~~G~ 421 (875)
..++..+|+++++|||++ ...+...++.+. .|.++++++|.+..+ + ..+||++++|++|+
T Consensus 188 ~~i~~~~P~villDE~~~------~e~~~~l~~~~~--~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~ 259 (270)
T TIGR02858 188 MLIRSMSPDVIVVDEIGR------EEDVEALLEALH--AGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK 259 (270)
T ss_pred HHHHhCCCCEEEEeCCCc------HHHHHHHHHHHh--CCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC
Confidence 222235899999999974 233444445543 488999999865432 2 26799999999887
Q ss_pred EEEecChhhH
Q 002833 422 IVYQGPRDNV 431 (875)
Q Consensus 422 iv~~Gp~~~~ 431 (875)
..|.++++
T Consensus 260 --~~g~~~~i 267 (270)
T TIGR02858 260 --GPGTVEAV 267 (270)
T ss_pred --CCCceeec
Confidence 56665544
No 420
>PF08370 PDR_assoc: Plant PDR ABC transporter associated; InterPro: IPR013581 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This domain is found on the C terminus of ABC-2 type transporter domains (IPR013525 from INTERPRO). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents [] (see also IPR010929 from INTERPRO). The PDR family is characterised by a configuration in which the ABC domain is nearer the N terminus of the protein than the transmembrane domain [].
Probab=99.37 E-value=4e-13 Score=112.38 Aligned_cols=57 Identities=56% Similarity=1.038 Sum_probs=54.4
Q ss_pred cccccceeecccCccccCcchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccee
Q 002833 751 QPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVI 807 (875)
Q Consensus 751 ~~~~G~~~L~~~g~~~~~~~~w~~~giL~g~~~~f~~l~~l~L~~~~~~~~~~~~~~ 807 (875)
+.+.|+++|+++|++++.+|||+++|+|+||+++||+++++||+|++|+++++++++
T Consensus 9 ~~tlG~~vL~~rG~~~~~~WyWIgvgaL~G~~vlFNil~~laL~yL~p~~k~~aiis 65 (65)
T PF08370_consen 9 NSTLGVAVLKSRGLFTESYWYWIGVGALLGFIVLFNILFTLALTYLNPLGKSQAIIS 65 (65)
T ss_pred CCcHHHHHHHHcCCCCCCcEEeehHHHHHHHHHHHHHHHHHHHHhcCCcCCCCCcCC
Confidence 578999999999999999999999999999999999999999999999999998864
No 421
>PRK00064 recF recombination protein F; Reviewed
Probab=99.31 E-value=1.1e-10 Score=131.96 Aligned_cols=79 Identities=23% Similarity=0.330 Sum_probs=63.9
Q ss_pred cCCCCCHHHHHHHHHHHHHh---------cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHh
Q 002833 339 MRRGISGGQKKRVTTGEMLV---------GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD 409 (875)
Q Consensus 339 ~~rgLSGGerkRVsIA~aLv---------~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~ 409 (875)
...-+|+||+|++.+|..|+ ++|+|++||||+++||+..+..+++.|.++ +..++++.|++. .+..
T Consensus 270 ~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~----~~qv~it~~~~~-~~~~ 344 (361)
T PRK00064 270 AADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL----GAQVFITTTDLE-DLAD 344 (361)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc----CCEEEEEcCChh-hhhh
Confidence 34569999999999999885 799999999999999999999999988764 346777766643 3444
Q ss_pred hc--CeEEEEeCCeE
Q 002833 410 LF--DDIILLSEGQI 422 (875)
Q Consensus 410 lf--D~vilL~~G~i 422 (875)
++ ++++.+.+|++
T Consensus 345 ~~~~~~i~~v~~G~i 359 (361)
T PRK00064 345 LLENAKIFHVEQGKI 359 (361)
T ss_pred hhccCcEEEEeCCEE
Confidence 43 57899999987
No 422
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.31 E-value=3e-12 Score=131.27 Aligned_cols=81 Identities=12% Similarity=0.101 Sum_probs=55.8
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHH-HHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCC
Q 002833 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQIC-KFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (875)
Q Consensus 342 gLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~-~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G 420 (875)
.+|+|++|...+.. .+.+|+++++|||++|+|+.....+. ..++.+.+..+.++++++|.+ ++.+++|+.--+..+
T Consensus 61 ~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~~~~v~~~ 137 (185)
T smart00534 61 TFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADEHPGVRNL 137 (185)
T ss_pred HHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhcCccceEE
Confidence 47777776433332 24599999999999999999888875 455666653478888888876 577778754444444
Q ss_pred eEEEe
Q 002833 421 QIVYQ 425 (875)
Q Consensus 421 ~iv~~ 425 (875)
++.+.
T Consensus 138 ~~~~~ 142 (185)
T smart00534 138 HMSAD 142 (185)
T ss_pred EEEEE
Confidence 44433
No 423
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.27 E-value=4.6e-12 Score=117.54 Aligned_cols=74 Identities=23% Similarity=0.163 Sum_probs=61.5
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (875)
..+|+++++.+++|++++|+||||||||||+++|. +|+|.++|.++..+.. .+..+|++|+ ....
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~---------~G~i~~~g~di~~~~~~~~~~~~~~~~q~---lf~~ 69 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI---------KRKHRLVGDDNVEIREDSKDELIGRNPEL---GLEI 69 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh---------CCeEEEeeEeHHHhhhhhcCCEEEEechh---cchh
Confidence 45899999999999999999999999999999985 6889999998865432 3556777776 3445
Q ss_pred CHHHHHHHh
Q 002833 261 TVRETLDFS 269 (875)
Q Consensus 261 TV~EtL~f~ 269 (875)
||+|||.++
T Consensus 70 ti~~Ni~~~ 78 (107)
T cd00820 70 RLRLNIFLI 78 (107)
T ss_pred hHHhhceee
Confidence 999999874
No 424
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=99.26 E-value=1.4e-10 Score=120.80 Aligned_cols=148 Identities=19% Similarity=0.156 Sum_probs=121.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCcchHHHHHHHHHHHHHHHhHHHHHHHHhhcCCcHHHHHHHHHHHH
Q 002833 615 PSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFIL 694 (875)
Q Consensus 615 ~~~ay~la~~l~~iP~~~~~~~if~~i~Y~m~Gl~~~~~~Ff~f~l~l~l~~~~~~~lf~~iaa~~~~~~~A~~~~~~~~ 694 (875)
+++.+.+++.+..+++.++++++...+.|++.|+++. +++.+++.+++...+..+++.+++++.++... .++.+.+
T Consensus 58 ~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~--~~~~~~~ 133 (208)
T TIGR03062 58 RSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGR--FLALVLL 133 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchH--HHHHHHH
Confidence 4567899999999999999999999999999999874 57778888888999999999999999987644 3444455
Q ss_pred HHHHHhcccccCCCCccchhhhhhhhCHHHHHHHHHHHHhhcCCccccCCCCCCCccccccceeecccCccccCcchhhh
Q 002833 695 LIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIG 774 (875)
Q Consensus 695 ~~~~lf~Gf~i~~~~ip~w~~W~~~isP~~Ya~~al~~NEf~~~~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~ 774 (875)
.+.++++|.+.|.+.+|.|++|+.|++|++|+.+++-.+.+.+. + ...|.+
T Consensus 134 ~~~~~~sG~~~P~~~~P~~~~~i~~~~P~t~~~~~~r~~~~~~~-~----------------------------~~~~~~ 184 (208)
T TIGR03062 134 VLQLGSSGGTFPIELLPAFFQAIHPFLPMTYSVNGLRQLISGGN-D----------------------------GTLWQA 184 (208)
T ss_pred HHHHccCCCccchhhCHHHHHHhhhhCcHHHHHHHHHHHHhCCc-H----------------------------HHHHHH
Confidence 56667899899999999999999999999999999865544221 0 124888
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 002833 775 VGALTGYSFLFNFLFIAALAY 795 (875)
Q Consensus 775 ~giL~g~~~~f~~l~~l~L~~ 795 (875)
+++|++|.+++.++++...+.
T Consensus 185 ~~~L~~~~~v~~~la~~~~~~ 205 (208)
T TIGR03062 185 VAVLLLILVVFLALSLLSARR 205 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 999999999888887776654
No 425
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=99.23 E-value=2.5e-09 Score=115.14 Aligned_cols=228 Identities=17% Similarity=0.087 Sum_probs=156.6
Q ss_pred HHHHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHHHhhhccccCCCCCcccchhHH-----HHHHHHHHHHHHHHHHHHHH
Q 002833 524 FRACFAREWLLMKRN-SFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYF-----GALFFSLLNIMFNGFAENAM 597 (875)
Q Consensus 524 ~~~~~~R~~~~~~Rd-~~~~~~r~~~~ii~ali~gt~F~~~~~~~~~~~~~~~~~-----g~lFf~~~~~~~~~~~el~~ 597 (875)
....++|+++..+|+ +......+++-++.-++.|.+|=... + .. ++..|. |.+-+++++. ++.+.
T Consensus 7 ~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~-~--~~-~g~~y~~f~~pg~l~~~~~~~---~~~~~-- 77 (253)
T TIGR01291 7 WAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMV-G--SV-DGVSYAAFLAAGMVATSAMTA---STFET-- 77 (253)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhc-c--cc-CCCCHHHHHHHHHHHHHHHHH---HHHHH--
Confidence 455669999999999 88888888888888888888765321 1 11 122233 3333333222 21110
Q ss_pred HhhhhhHHHHHhhcCcc--------chHHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCcchHHHHHHHHHHHHHHHhH
Q 002833 598 TVLRLPIFYKQRDHLFY--------PSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMS 669 (875)
Q Consensus 598 ~~~~rpvf~kqr~~~~Y--------~~~ay~la~~l~~iP~~~~~~~if~~i~Y~m~Gl~~~~~~Ff~f~l~l~l~~~~~ 669 (875)
--.++.++|..+.+ +++.+.+++++.+.-..++..++...+.+ ..|..+. ...+..++++++...+.
T Consensus 78 ---~~~~~~~~r~~g~~~~l~~~Pv~~~~~~~g~~~~~~~~~~~~~~ii~~~~~-~~g~~~~-~~~l~~~~~~ll~~l~~ 152 (253)
T TIGR01291 78 ---IYATFARMRVTRTWEAMLYTPITVGDIVLGEVAWAATKASLAGTIIGVVTA-TLGYIEW-WSLIYILPVIALTGLAF 152 (253)
T ss_pred ---HHHHHHHHHHcccHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhchh-hhHHHHHHHHHHHHHHH
Confidence 01345666665542 67899999999887777777666555443 4455443 33444556666677778
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhhCHHHHHHHHHHHHhhcCCccccCCCCCCC
Q 002833 670 LPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSI 749 (875)
Q Consensus 670 ~~lf~~iaa~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~w~~W~~~isP~~Ya~~al~~NEf~~~~~~~~~~~~~~ 749 (875)
.+++.++|++.++...+..+..+++.+++.+||.+.|.+.||.|++|+.++||+.|+.|++=.- +.+..
T Consensus 153 ~~lg~~~a~~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~R~~-~~g~~---------- 221 (253)
T TIGR01291 153 ASLSMLVAALAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDIRPV-MLGGP---------- 221 (253)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHHHHH-HhCCC----------
Confidence 8999999999999999999999999999999999999999999999999999999999985322 21100
Q ss_pred ccccccceeecccCccccCcchhhhHHHHHHHHHHHHHHHHHHHH
Q 002833 750 NQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALA 794 (875)
Q Consensus 750 ~~~~~G~~~L~~~g~~~~~~~~w~~~giL~g~~~~f~~l~~l~L~ 794 (875)
. ...|.++++++++.+++..++....+
T Consensus 222 --------------~----~~~~~~~~~l~~~~vv~~~la~~~fr 248 (253)
T TIGR01291 222 --------------G----TQVGLHLGALCLYAVVPFFISAALLR 248 (253)
T ss_pred --------------c----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 11356778888888777766554443
No 426
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=99.22 E-value=1.6e-09 Score=114.94 Aligned_cols=216 Identities=13% Similarity=0.122 Sum_probs=139.9
Q ss_pred hhchhHHHHHHHHHHHHHHHHHhhhccccCCCCCcccchh-HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhcCc-
Q 002833 536 KRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSR-YFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLF- 613 (875)
Q Consensus 536 ~Rd~~~~~~r~~~~ii~ali~gt~F~~~~~~~~~~~~~~~-~~g~lFf~~~~~~~~~~~el~~~~~~rpvf~kqr~~~~- 613 (875)
+|||...++-+.+-+++-++.+.+|=+. ...+ +.+. ..|.+-+..++.+..+ .+. .+.+||+.+.
T Consensus 2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~---~~~------~i~~er~~G~l 68 (232)
T TIGR00025 2 LRVGAQIILTMFIPITFMVGLNLLPGGS-VTHN---RGATFIPVLMALAAISTAFTG---QAI------AVARDRRYGAL 68 (232)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCc-cCCc---chhHhhHHHHHHHHHHHHHHH---HHH------HHHHHHHhCHH
Confidence 6899999999998888877777766542 1111 1111 2232222222211111 111 1234444443
Q ss_pred -------cchHHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCcchHHHHHHHHHHHHHHHhHHHHHHHHhhcCC---cH
Q 002833 614 -------YPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGR---TE 683 (875)
Q Consensus 614 -------Y~~~ay~la~~l~~iP~~~~~~~if~~i~Y~m~Gl~~~~~~Ff~f~l~l~l~~~~~~~lf~~iaa~~~---~~ 683 (875)
.+++.|.+++.+..++..++..+++. +++++.|++...+.+ ..++.+++...++.+++.+++++++ +.
T Consensus 69 ~rl~~~P~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 146 (232)
T TIGR00025 69 KRLGATPLPRLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGGAL-TALTLGAVIIALGTALFAALGLVAGGTLQA 146 (232)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCchH-HHHHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence 36789999999988888887766555 557788998765433 3334444444555666666666664 45
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhhCHHHHHHHHHHHHhhcCCccccCCCCCCCccccccceeecccC
Q 002833 684 VISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRG 763 (875)
Q Consensus 684 ~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~w~~W~~~isP~~Ya~~al~~NEf~~~~~~~~~~~~~~~~~~~G~~~L~~~g 763 (875)
+.+..++.+..++++++||++.|.+.||.|++|+.+++|++|+.+++-.--..+.
T Consensus 147 ~~~~~i~~~~~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~r~~~~~~~------------------------- 201 (232)
T TIGR00025 147 EIVLAVANLVWFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALRQAATVSV------------------------- 201 (232)
T ss_pred HHHHHHHHHHHHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHHHHHHcCCC-------------------------
Confidence 5558888888999999999999999999999999999999999998643211100
Q ss_pred ccccCcchhhhHHHHHHHHHHHHHHHHHHHH
Q 002833 764 FSTESNWYWIGVGALTGYSFLFNFLFIAALA 794 (875)
Q Consensus 764 ~~~~~~~~w~~~giL~g~~~~f~~l~~l~L~ 794 (875)
+....|.++++++++.+++..+.....+
T Consensus 202 ---~~~~~~~~~~~l~~~~~v~~~la~~~~~ 229 (232)
T TIGR00025 202 ---DTFGAVRDLVVVLAFWVALAALAAIRLR 229 (232)
T ss_pred ---ChhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0112477888888888887776665543
No 427
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=99.21 E-value=8.4e-10 Score=118.53 Aligned_cols=206 Identities=14% Similarity=0.079 Sum_probs=140.7
Q ss_pred HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccc-cCCC----CCccc--chhHHHHHHHHHHHHHHHHHH
Q 002833 521 WELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRT-EMSV----GDMNG--GSRYFGALFFSLLNIMFNGFA 593 (875)
Q Consensus 521 ~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~gt~F~~~-~~~~----~~~~~--~~~~~g~lFf~~~~~~~~~~~ 593 (875)
|..+.++++|+++..+||+..+..-+++-+++-++.|.+|-.. +.+. ++..+ .....|.+-+++++.++.+-
T Consensus 1 ~~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~~~- 79 (253)
T TIGR03861 1 LICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQSS- 79 (253)
T ss_pred ChHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHhh-
Confidence 3578899999999999999999999999999999999888432 1100 01001 11123444444333332211
Q ss_pred HHHHHhhh-hhHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCcchHHHHHHHHHHHHHHHhHHHH
Q 002833 594 ENAMTVLR-LPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPL 672 (875)
Q Consensus 594 el~~~~~~-rpvf~kqr~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Y~m~Gl~~~~~~Ff~f~l~l~l~~~~~~~l 672 (875)
.....++ +..+.+-+. .-.+.+.+.+++++...-..+++.++..++.+ ..|.++....++...+.+++...+..++
T Consensus 80 -~~~~~~r~~g~~~~l~~-~p~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~-~~g~~~~~~~~l~~~~~~~l~~~~~~~l 156 (253)
T TIGR03861 80 -LSMVYDREMGSMRVLLT-SPLPRPFLLFCKLLASALISLLQVYAFLAIAA-LVGVQPPVWGYVSVLPALVLVAFMLGAL 156 (253)
T ss_pred -hHhHHhHhcCHHHHHhh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 0111111 111111111 12467889999999998888887666555443 3377666444554455556677778899
Q ss_pred HHHHhhcCCcHHHHHHHHHHHHHHHHHhcccccCCCCc---cchhhhhhhhCHHHHHHHHH
Q 002833 673 YRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDI---EPFLRWGYYISPMMYGQTSL 730 (875)
Q Consensus 673 f~~iaa~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~i---p~w~~W~~~isP~~Ya~~al 730 (875)
+.++|+++++...+..+.++++.+++.+||.+.|.+.+ |.|++|+.++||+.|..|++
T Consensus 157 gl~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~ 217 (253)
T TIGR03861 157 GLALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELV 217 (253)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHH
Confidence 99999999999989999999999999999999998666 88999999999999999885
No 428
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.20 E-value=1.2e-10 Score=122.06 Aligned_cols=58 Identities=14% Similarity=0.139 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHH-HHHHHHHHHh-C-CcEEEEeecCC
Q 002833 346 GQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQI-CKFLKQMVHI-L-DVTMIVALLQP 403 (875)
Q Consensus 346 GerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i-~~~L~~l~~~-~-~~tviisi~q~ 403 (875)
-|-||++++.+++.+|+++++|||++|+|+.....+ ...++++.+. . +.++|++.|.+
T Consensus 94 ~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~ 154 (213)
T cd03281 94 IDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFH 154 (213)
T ss_pred HHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChH
Confidence 477899999999999999999999999999875555 4678887653 1 34778777754
No 429
>PRK14079 recF recombination protein F; Provisional
Probab=99.18 E-value=4.9e-10 Score=126.06 Aligned_cols=77 Identities=17% Similarity=0.215 Sum_probs=62.3
Q ss_pred CCCHHHHHHHHHHHHHh---------cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcC
Q 002833 342 GISGGQKKRVTTGEMLV---------GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (875)
Q Consensus 342 gLSGGerkRVsIA~aLv---------~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD 412 (875)
-+|+||+|++.+|..|+ ++|++++||||+++||......+.+.|.... .++|.++ + .-+.+|
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~----q~~it~t-~----~~~~~~ 333 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP----QAIVAGT-E----APPGAA 333 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC----cEEEEcC-C----CCCCCc
Confidence 47999999999999998 8999999999999999999999998886532 2444433 2 235699
Q ss_pred eEEEEeCCeEEEecC
Q 002833 413 DIILLSEGQIVYQGP 427 (875)
Q Consensus 413 ~vilL~~G~iv~~Gp 427 (875)
+++.+.+|++.-..|
T Consensus 334 ~~~~~~~~~~~~~~~ 348 (349)
T PRK14079 334 LTLRIEAGVFTPEAP 348 (349)
T ss_pred eEEEEeccEecCCCC
Confidence 999999998764443
No 430
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.16 E-value=3.3e-11 Score=126.52 Aligned_cols=73 Identities=25% Similarity=0.433 Sum_probs=55.2
Q ss_pred CCCHHHHHHHHHHHHH----hcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEE
Q 002833 342 GISGGQKKRVTTGEML----VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (875)
Q Consensus 342 gLSGGerkRVsIA~aL----v~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL 417 (875)
.+|||||.+++||-.| ..+.++++||||.++||...+..+.+.|+++.+ +.-+|++.|+ +++++.+|+.+.+
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~--~~Q~ii~Th~--~~~~~~a~~~~~v 211 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK--QSQFIITTHN--PEMFEDADKLIGV 211 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT--TSEEEEE-S---HHHHTT-SEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccccc--ccccccccccccc
Confidence 4999999999999554 367899999999999999999999999999874 3455665565 4689999998876
Q ss_pred e
Q 002833 418 S 418 (875)
Q Consensus 418 ~ 418 (875)
.
T Consensus 212 ~ 212 (220)
T PF02463_consen 212 T 212 (220)
T ss_dssp E
T ss_pred c
Confidence 4
No 431
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.12 E-value=1.2e-10 Score=142.38 Aligned_cols=62 Identities=13% Similarity=0.203 Sum_probs=53.0
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHH-HHHHHHHHhCCcEEEEeecCCch
Q 002833 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQIC-KFLKQMVHILDVTMIVALLQPAP 405 (875)
Q Consensus 342 gLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~-~~L~~l~~~~~~tviisi~q~~~ 405 (875)
.+|+|+++++.|++.+ .+|+++++|||++|+|+.....+. ..|+.+.+ .+.++|+++|.+.-
T Consensus 385 tfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~-~g~~viitTH~~eL 447 (771)
T TIGR01069 385 TFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLK-QNAQVLITTHYKEL 447 (771)
T ss_pred HHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECChHHH
Confidence 4999999999998876 889999999999999999999994 67777765 58888888887643
No 432
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.12 E-value=1e-09 Score=126.03 Aligned_cols=173 Identities=21% Similarity=0.288 Sum_probs=109.5
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeC---CCC--------ccCceEEEEe
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL---NEF--------VPQRTCAYIS 251 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~---~~~--------~~~~~~~yv~ 251 (875)
...+++++ +.+.+|+.++|+|+||+|||||+++|+|..+++ .|.|.+.|+.- .++ ..++.+.++.
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~---~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~ 220 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSAD---LNVIALIGERGREVREFIERDLGPEGLKRSIVVVA 220 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEE
Confidence 45689999 999999999999999999999999999999886 89999965443 322 1246788887
Q ss_pred cCCCCCCCCCHHHHH--HHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCc
Q 002833 252 QHDLHHGEMTVRETL--DFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI 329 (875)
Q Consensus 252 Q~d~~~~~lTV~EtL--~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~ 329 (875)
+-|. ++-+-+ .+.+ ++ ..++ ++.-|-
T Consensus 221 ~~~~-----~~~~r~~~~~~a--------------~~------------------------------iAEy-fr~~g~-- 248 (438)
T PRK07721 221 TSDQ-----PALMRIKGAYTA--------------TA------------------------------IAEY-FRDQGL-- 248 (438)
T ss_pred CCCC-----CHHHHHHHHHHH--------------HH------------------------------HHHH-HHHCCC--
Confidence 6432 111111 1110 00 0111 111121
Q ss_pred cccccc-cCccCCCCCHHHHHHHHHH-HHHhcCCcEEEEeC--CCCCCCHHHHHHHHHHHHHHHH-hCCc-----EEEEe
Q 002833 330 CADTMV-GDEMRRGISGGQKKRVTTG-EMLVGTANVLYMDE--ISTGLDSSTTFQICKFLKQMVH-ILDV-----TMIVA 399 (875)
Q Consensus 330 ~~dt~v-g~~~~rgLSGGerkRVsIA-~aLv~~p~iLlLDE--PTsGLDs~t~~~i~~~L~~l~~-~~~~-----tviis 399 (875)
|..+ -| .++ |.+=| |.+. +.+.| .|+|+|+.....+.+.++++.. ..|. |+++.
T Consensus 249 --~Vll~~D----slt-----r~A~A~rEis-----l~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~ 312 (438)
T PRK07721 249 --NVMLMMD----SVT-----RVAMAQREIG-----LAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVD 312 (438)
T ss_pred --cEEEEEe----ChH-----HHHHHHHHHH-----HhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEE
Confidence 1111 01 111 11111 1111 11234 3679999999999999999874 2454 66666
Q ss_pred ecCCchhHHhhcCeEEEEeCCeEEEecChhh
Q 002833 400 LLQPAPETYDLFDDIILLSEGQIVYQGPRDN 430 (875)
Q Consensus 400 i~q~~~ei~~lfD~vilL~~G~iv~~Gp~~~ 430 (875)
.|+-. + .+||++..+.+|+++..+...+
T Consensus 313 ~hdm~-e--~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 313 GDDMN-E--PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred CCCCC-c--hhhhhEEEecCEEEEEeccHHH
Confidence 55443 3 6799999999999999998764
No 433
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.10 E-value=2.9e-10 Score=118.98 Aligned_cols=45 Identities=16% Similarity=0.124 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhcCCcEEEEeCCC-----CCCCHHHHHHHHHHHHHHHH
Q 002833 346 GQKKRVTTGEMLVGTANVLYMDEIS-----TGLDSSTTFQICKFLKQMVH 390 (875)
Q Consensus 346 GerkRVsIA~aLv~~p~iLlLDEPT-----sGLDs~t~~~i~~~L~~l~~ 390 (875)
-|++++.||++++.+|+++++|||| +|||+.+...+.+.++++++
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 3999999999999999999999999 99999999999999999875
No 434
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.07 E-value=2.4e-10 Score=125.93 Aligned_cols=95 Identities=26% Similarity=0.285 Sum_probs=78.4
Q ss_pred HHHHHHHHhCCCccccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q 002833 317 VTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTM 396 (875)
Q Consensus 317 ~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tv 396 (875)
..+++++.+.|.+..|.-+.. |||||-||.+||.+.+..+++.++|||++-||...+..-...+|.+.. .+.-+
T Consensus 193 ~~~~~~~~~~L~~~~~re~~~-----lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~-p~~Yi 266 (592)
T KOG0063|consen 193 NKEEVCDQLDLNNLLDREVEQ-----LSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLIN-PDRYI 266 (592)
T ss_pred cHHHHHHHHHHhhHHHhhhhh-----cccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhC-CCCeE
Confidence 456778888888888877765 999999999999999999999999999999999999999999999986 35566
Q ss_pred EEeecCCchhHHh-hcCeEEEEeC
Q 002833 397 IVALLQPAPETYD-LFDDIILLSE 419 (875)
Q Consensus 397 iisi~q~~~ei~~-lfD~vilL~~ 419 (875)
|+.-|+.+ +.+ +.|-+.+|..
T Consensus 267 IVVEHDLs--VLDylSDFiCcLYG 288 (592)
T KOG0063|consen 267 IVVEHDLS--VLDYLSDFICCLYG 288 (592)
T ss_pred EEEEeech--HHHhhhcceeEEec
Confidence 66555543 444 5677777764
No 435
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.06 E-value=1.2e-09 Score=115.14 Aligned_cols=134 Identities=13% Similarity=0.169 Sum_probs=85.6
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhc-CcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCH
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAG-KLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG-~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 262 (875)
..+.+|+++.+++|++++|+||||+||||||+++++ .+.+. .|.....- . -.++|..|- +..+..
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~---~G~~v~a~-~-------~~~~~~~~i---~~~~~~ 83 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQ---IGSFVPAS-S-------ATLSIFDSV---LTRMGA 83 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHh---CCCEEEcC-c-------eEEeccceE---EEEecC
Confidence 468999999999999999999999999999999999 44443 56543321 1 112332221 100011
Q ss_pred HHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCC
Q 002833 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (875)
Q Consensus 263 ~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (875)
.|++. .+
T Consensus 84 ~d~~~-------------------------------------------------------------------------~~ 90 (222)
T cd03287 84 SDSIQ-------------------------------------------------------------------------HG 90 (222)
T ss_pred ccccc-------------------------------------------------------------------------cc
Confidence 11110 01
Q ss_pred CC--HHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHH-HHHHHHHHHhCCcEEEEeecCCc
Q 002833 343 IS--GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQI-CKFLKQMVHILDVTMIVALLQPA 404 (875)
Q Consensus 343 LS--GGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i-~~~L~~l~~~~~~tviisi~q~~ 404 (875)
+| ..|-+|++-.-.-+++++++++|||.+|.|+.....+ ...++.+.+..+.++|+++|.+.
T Consensus 91 ~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~ 155 (222)
T cd03287 91 MSTFMVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPS 155 (222)
T ss_pred cchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHH
Confidence 12 1234444444444568899999999999987777765 45666766544788888887654
No 436
>PRK15066 inner membrane transport permease; Provisional
Probab=99.05 E-value=8.2e-08 Score=103.51 Aligned_cols=238 Identities=14% Similarity=0.141 Sum_probs=146.2
Q ss_pred HHHHHHHHHHHHHHHHhhchhH-HHHHHHHHHHHHHHHHhhhccccCCC-CCcccc--hhHHHHHHHHHHHHHHHHHHHH
Q 002833 520 KWELFRACFAREWLLMKRNSFV-YIFKTFQLTFMSLICMTVYFRTEMSV-GDMNGG--SRYFGALFFSLLNIMFNGFAEN 595 (875)
Q Consensus 520 ~~~q~~~~~~R~~~~~~Rd~~~-~~~r~~~~ii~ali~gt~F~~~~~~~-~~~~~~--~~~~g~lFf~~~~~~~~~~~el 595 (875)
+|.-++++++|+++...||+.. ...-+++.++..++.|.++- ...+. ++. +- ....|.+-+..+..+.+ ..
T Consensus 6 ~~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~-~~~~~~~~~-~y~~fl~pGll~~~~~~~~~~---~~ 80 (257)
T PRK15066 6 YWIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIG-SRIGEMGGF-SYMQFIVPGLIMMSVITNSYS---NV 80 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc-cccCCCCCC-cHHHHHHHHHHHHHHHHHHHH---HH
Confidence 4678899999999999999854 33444555566666666542 11110 111 11 11124443333322222 12
Q ss_pred HHHhhhhhHHHHH---hhcCccchHHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCcchHHHHHHHHHHHHHHHhHHHH
Q 002833 596 AMTVLRLPIFYKQ---RDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPL 672 (875)
Q Consensus 596 ~~~~~~rpvf~kq---r~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Y~m~Gl~~~~~~Ff~f~l~l~l~~~~~~~l 672 (875)
+..+.+.. +.|. -...=.+++.+.+++++...=..++.+++..++.+...|..+. ....++..+++...+....
T Consensus 81 ~~~i~~~~-~~~~~~~l~vtp~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~ 157 (257)
T PRK15066 81 ASSFFSAK-FQRNIEELLVSPVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLG 157 (257)
T ss_pred HHHHHHHH-HhhhHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHH
Confidence 22222111 1111 1112347788888888887766666665555555554466643 2223333333333434445
Q ss_pred HHHHhhcCCcHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhhCHHHHHHHHHHHHhhcCCccccCCCCCCCccc
Q 002833 673 YRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQP 752 (875)
Q Consensus 673 f~~iaa~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~w~~W~~~isP~~Ya~~al~~NEf~~~~~~~~~~~~~~~~~ 752 (875)
+.+++++.++...+..+.++++.+++..||.+.|.+++|.|++|+.++||+.|..|++=.. +.
T Consensus 158 gl~~a~~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~R~~-~~---------------- 220 (257)
T PRK15066 158 GLINAVFAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAFRYG-FL---------------- 220 (257)
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHHHHH-Hc----------------
Confidence 7788888888888888999999999999999999999999999999999999999986321 10
Q ss_pred cccceeecccCccccCcchhhhHHHHHHHHHHHHHHHHHHHH
Q 002833 753 TIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALA 794 (875)
Q Consensus 753 ~~G~~~L~~~g~~~~~~~~w~~~giL~g~~~~f~~l~~l~L~ 794 (875)
| .. ....|.++++++++.+++.+++....+
T Consensus 221 --g--------~~--~~~~~~~l~~l~~~~~v~~~la~~~~~ 250 (257)
T PRK15066 221 --G--------IS--DVPLWLAFAVLLVFIVVLYLLAWYLLE 250 (257)
T ss_pred --C--------CC--CccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00 011377888999988887777666554
No 437
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.01 E-value=4.8e-09 Score=118.62 Aligned_cols=59 Identities=19% Similarity=0.300 Sum_probs=52.7
Q ss_pred CCCCHHHHHHHHHHHHHhc---------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCC
Q 002833 341 RGISGGQKKRVTTGEMLVG---------TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQP 403 (875)
Q Consensus 341 rgLSGGerkRVsIA~aLv~---------~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~ 403 (875)
.-+|.||+|++.+|..|+. .|+||+||||+++||......+++.|+.. +..++++.|++
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~----~~qv~it~~~~ 341 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL----GVQVFVTAISL 341 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc----CCEEEEEecCh
Confidence 3589999999999999999 99999999999999999999999999763 56788887765
No 438
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.99 E-value=3.7e-09 Score=112.20 Aligned_cols=75 Identities=16% Similarity=0.229 Sum_probs=52.8
Q ss_pred CCHHHHHHHHHHHHHh----cCCcEEEEeCCCCCC----CHHHHHHHHHHHHHHHHhCCcEEEEeecCCch------hHH
Q 002833 343 ISGGQKKRVTTGEMLV----GTANVLYMDEISTGL----DSSTTFQICKFLKQMVHILDVTMIVALLQPAP------ETY 408 (875)
Q Consensus 343 LSGGerkRVsIA~aLv----~~p~iLlLDEPTsGL----Ds~t~~~i~~~L~~l~~~~~~tviisi~q~~~------ei~ 408 (875)
+|+++.++..+.+.+- .+|+++++||||+++ |+....++.+.++.+++. +.|++++.++... .+.
T Consensus 96 ~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~-g~tvi~t~~~~~~~~~~~~~~~ 174 (230)
T PRK08533 96 LSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSL-NKVIILTANPKELDESVLTILR 174 (230)
T ss_pred ccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhC-CCEEEEEecccccccccceeEE
Confidence 6777666655554433 369999999999999 778888899999998764 7777776543321 123
Q ss_pred hhcCeEEEEe
Q 002833 409 DLFDDIILLS 418 (875)
Q Consensus 409 ~lfD~vilL~ 418 (875)
.++|-|+.|+
T Consensus 175 ~~~DgvI~L~ 184 (230)
T PRK08533 175 TAATMLIRLE 184 (230)
T ss_pred EeeeEEEEEE
Confidence 4568888776
No 439
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.95 E-value=7.2e-09 Score=105.48 Aligned_cols=77 Identities=19% Similarity=0.195 Sum_probs=60.3
Q ss_pred CCCCHHHHH------HHHHHHHHhcCCcEEEEeCCCCCCC---HHHHHHHHHHHHHHHHhCCcEEEEeecCCch------
Q 002833 341 RGISGGQKK------RVTTGEMLVGTANVLYMDEISTGLD---SSTTFQICKFLKQMVHILDVTMIVALLQPAP------ 405 (875)
Q Consensus 341 rgLSGGerk------RVsIA~aLv~~p~iLlLDEPTsGLD---s~t~~~i~~~L~~l~~~~~~tviisi~q~~~------ 405 (875)
..+|+||+| ......+...+|+++++|||++.+| ......+.+.++.+.+ .|.|++++.|....
T Consensus 70 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~-~g~tvi~v~~~~~~~~~~~~ 148 (187)
T cd01124 70 DEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKR-FGVTTLLTSEQSGLEGTGFG 148 (187)
T ss_pred cccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHH-CCCEEEEEeccccCCCcccC
Confidence 348999998 4444455667999999999999999 7778888888888876 48888888765543
Q ss_pred --hHHhhcCeEEEEe
Q 002833 406 --ETYDLFDDIILLS 418 (875)
Q Consensus 406 --ei~~lfD~vilL~ 418 (875)
.+..++|.|+.|+
T Consensus 149 ~~~~~~~aD~ii~l~ 163 (187)
T cd01124 149 GGDVEYLVDGVIRLR 163 (187)
T ss_pred cCceeEeeeEEEEEE
Confidence 2567899999986
No 440
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=98.95 E-value=1.6e-09 Score=129.44 Aligned_cols=77 Identities=22% Similarity=0.266 Sum_probs=68.6
Q ss_pred CCCCHHHHHHHHHHHHHhcC----CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEE
Q 002833 341 RGISGGQKKRVTTGEMLVGT----ANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (875)
Q Consensus 341 rgLSGGerkRVsIA~aLv~~----p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vil 416 (875)
+.+||||+|||+||++++.. |+++++||||+|||+.++..+.+.|+++++ +.++|+++|+| .+...||++++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~--~~~vi~iTH~~--~~~~~ad~~~~ 514 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE--RHQVLCVTHLP--QVAAHADAHFK 514 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEEChH--HHHHhcCeEEE
Confidence 46899999999999999875 699999999999999999999999999974 68999988886 35578999999
Q ss_pred EeCCe
Q 002833 417 LSEGQ 421 (875)
Q Consensus 417 L~~G~ 421 (875)
|++|.
T Consensus 515 l~k~~ 519 (563)
T TIGR00634 515 VEKEG 519 (563)
T ss_pred EEEcc
Confidence 98864
No 441
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.93 E-value=3.2e-09 Score=117.59 Aligned_cols=144 Identities=15% Similarity=0.148 Sum_probs=95.1
Q ss_pred ccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccC--ceEEEEecCC-CCCCCCCHH
Q 002833 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ--RTCAYISQHD-LHHGEMTVR 263 (875)
Q Consensus 187 L~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~--~~~~yv~Q~d-~~~~~lTV~ 263 (875)
.+=+++.+++|+.++|.||+||||||||++|++.+++. .|.|.+.. ..++... ..+.++.+.. .-....|..
T Consensus 134 ~~~l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~---~~iv~ied--~~El~~~~~~~~~l~~~~~~~~~~~~~~~ 208 (308)
T TIGR02788 134 KEFLRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKD---ERIITIED--TREIFLPHPNYVHLFYSKGGQGLAKVTPK 208 (308)
T ss_pred HHHHHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCcc---ccEEEEcC--ccccCCCCCCEEEEEecCCCCCcCccCHH
Confidence 34467889999999999999999999999999999875 67777742 2222211 2222222210 000001111
Q ss_pred HHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCC
Q 002833 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (875)
Q Consensus 264 EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (875)
T Consensus 209 -------------------------------------------------------------------------------- 208 (308)
T TIGR02788 209 -------------------------------------------------------------------------------- 208 (308)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCeEE
Q 002833 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIV 423 (875)
Q Consensus 344 SGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~iv 423 (875)
-.+..+|-.+|+++++|||.+ .+..+.++.+... +.+++.++|..+ ..+..||+..|..|++.
T Consensus 209 -------~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~a~~~g-~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~ 271 (308)
T TIGR02788 209 -------DLLQSCLRMRPDRIILGELRG-------DEAFDFIRAVNTG-HPGSITTLHAGS--PEEAFEQLALMVKSSQA 271 (308)
T ss_pred -------HHHHHHhcCCCCeEEEeccCC-------HHHHHHHHHHhcC-CCeEEEEEeCCC--HHHHHHHHHHHhhcccc
Confidence 123445667899999999996 3445666666532 335577777665 56669999999999998
Q ss_pred EecChhhHH
Q 002833 424 YQGPRDNVL 432 (875)
Q Consensus 424 ~~Gp~~~~~ 432 (875)
..|.+.+..
T Consensus 272 ~~g~~~~~~ 280 (308)
T TIGR02788 272 GLGLDFAYI 280 (308)
T ss_pred ccCCCHHHH
Confidence 888877664
No 442
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.93 E-value=3e-09 Score=111.85 Aligned_cols=134 Identities=17% Similarity=0.198 Sum_probs=86.6
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHH
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (875)
..+-+|+++.+++|++++|.||||+|||||++.+++..--. .. |.. .|.+. +-++--|..+..+...
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la--~~------G~~----vpa~~-~~i~~~~~i~~~~~~~ 83 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMA--QM------GMD----VPAKS-MRLSLVDRIFTRIGAR 83 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHH--Hc------CCc----cCccc-cEeccccEEEEecCcc
Confidence 46899999999999999999999999999999999863210 01 111 11111 1111112222222333
Q ss_pred HHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCC
Q 002833 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (875)
Q Consensus 264 EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (875)
|++..+ +
T Consensus 84 d~~~~~-------------------------------------------------------------------------~ 90 (218)
T cd03286 84 DDIMKG-------------------------------------------------------------------------E 90 (218)
T ss_pred cccccC-------------------------------------------------------------------------c
Confidence 333211 1
Q ss_pred CH--HHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHH-HHHHHHhCCcEEEEeecCC
Q 002833 344 SG--GQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKF-LKQMVHILDVTMIVALLQP 403 (875)
Q Consensus 344 SG--GerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~-L~~l~~~~~~tviisi~q~ 403 (875)
|- .|-+|++-.-..+++|+++++|||.+|+|+.....+... ++.+.+..+.+++++.|.+
T Consensus 91 StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~ 153 (218)
T cd03286 91 STFMVELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYH 153 (218)
T ss_pred chHHHHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 11 233444444344578999999999999999999999888 7777764478888887765
No 443
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.92 E-value=6.7e-10 Score=118.92 Aligned_cols=86 Identities=15% Similarity=0.182 Sum_probs=63.8
Q ss_pred ccccccccCccCCCCCHHH--------HHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHH-HHHHHHHHHHhCCcEEEEe
Q 002833 329 ICADTMVGDEMRRGISGGQ--------KKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQ-ICKFLKQMVHILDVTMIVA 399 (875)
Q Consensus 329 ~~~dt~vg~~~~rgLSGGe--------rkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~-i~~~L~~l~~~~~~tviis 399 (875)
...++.+|. ..+.+|||| +||+++|+++..+++|.++ ||+.+|+.+..+ ++ +..+.. .+.|.|+.
T Consensus 117 ~a~~ev~~~-~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~-~~~~~ivl 190 (249)
T cd01128 117 RAYNTVVPP-SGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKG-TGNMELVL 190 (249)
T ss_pred hhhhhcccc-CCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHhc-CCCcEEEE
Confidence 334555543 344589999 9999999999999999999 999999755544 54 444432 35677776
Q ss_pred ecCCchhHHhhcCeEEEEeCCeE
Q 002833 400 LLQPAPETYDLFDDIILLSEGQI 422 (875)
Q Consensus 400 i~q~~~ei~~lfD~vilL~~G~i 422 (875)
.|... ....+|.|.+|..|.+
T Consensus 191 s~~la--~~~~~paI~vl~s~sr 211 (249)
T cd01128 191 DRRLA--ERRIFPAIDILKSGTR 211 (249)
T ss_pred chHHh--hCCCCCeEEEcCCCCc
Confidence 66543 4578999999999987
No 444
>PRK10869 recombination and repair protein; Provisional
Probab=98.92 E-value=3e-09 Score=126.34 Aligned_cols=77 Identities=18% Similarity=0.298 Sum_probs=68.3
Q ss_pred CCCCHHHHHHHHHHHHHhc----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEE
Q 002833 341 RGISGGQKKRVTTGEMLVG----TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (875)
Q Consensus 341 rgLSGGerkRVsIA~aLv~----~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vil 416 (875)
+.+||||+|||+||++++. +|+++++|||++|||..++..+.+.|+++++ +.++||++|+|. +..++|+.++
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~--~~qvi~iTH~~~--~~~~ad~~~~ 504 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE--STQVMCVTHLPQ--VAGCGHQHFF 504 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEecCHH--HHHhCCEEEE
Confidence 4589999999999999996 5899999999999999999999999999974 578888888774 5689999999
Q ss_pred EeCCe
Q 002833 417 LSEGQ 421 (875)
Q Consensus 417 L~~G~ 421 (875)
+.++.
T Consensus 505 v~k~~ 509 (553)
T PRK10869 505 VSKET 509 (553)
T ss_pred Eeccc
Confidence 98753
No 445
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.90 E-value=3e-09 Score=130.74 Aligned_cols=80 Identities=13% Similarity=0.159 Sum_probs=60.0
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCC
Q 002833 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICK-FLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (875)
Q Consensus 342 gLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~-~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G 420 (875)
.+|+|+++++.|++++ ++|+++++|||++|+|+.....+.. .+..+.+ .+.++|+++|++. .....+|+..++ ++
T Consensus 390 tfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~-~~~~vIitTH~~e-l~~~~~~~~~v~-~~ 465 (782)
T PRK00409 390 TFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRK-RGAKIIATTHYKE-LKALMYNREGVE-NA 465 (782)
T ss_pred HHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECChHH-HHHHHhcCCCeE-EE
Confidence 4999999999999988 8999999999999999999988865 5666655 5788888887743 222334444433 45
Q ss_pred eEEEe
Q 002833 421 QIVYQ 425 (875)
Q Consensus 421 ~iv~~ 425 (875)
.+.+.
T Consensus 466 ~~~~d 470 (782)
T PRK00409 466 SVEFD 470 (782)
T ss_pred EEEEe
Confidence 55553
No 446
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.89 E-value=3.3e-09 Score=126.73 Aligned_cols=78 Identities=22% Similarity=0.353 Sum_probs=67.6
Q ss_pred CCCCCHHHHHHHHHHHHHh----------cCCcEEEEeCCC-CCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHH
Q 002833 340 RRGISGGQKKRVTTGEMLV----------GTANVLYMDEIS-TGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETY 408 (875)
Q Consensus 340 ~rgLSGGerkRVsIA~aLv----------~~p~iLlLDEPT-sGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~ 408 (875)
...||||||||++||++|+ .+|+++|||||| ++||+.+...+.+.|+++ + +.++|++.|++ +..
T Consensus 466 ~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~-~--~~~iiiish~~--~~~ 540 (562)
T PHA02562 466 YASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL-K--DTNVFVISHKD--HDP 540 (562)
T ss_pred hhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC-C--CCeEEEEECch--hch
Confidence 3579999999999999887 599999999998 689999999999999998 3 67888888885 456
Q ss_pred hhcCeEEEEeC-CeE
Q 002833 409 DLFDDIILLSE-GQI 422 (875)
Q Consensus 409 ~lfD~vilL~~-G~i 422 (875)
+.||++++|.+ |+.
T Consensus 541 ~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 541 QKFDRHLKMEKVGRF 555 (562)
T ss_pred hhhhcEEEEEEECCe
Confidence 78999999986 554
No 447
>PRK13695 putative NTPase; Provisional
Probab=98.83 E-value=3.9e-09 Score=106.93 Aligned_cols=78 Identities=14% Similarity=0.172 Sum_probs=61.4
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEeCC--CCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeC
Q 002833 342 GISGGQKKRVTTGEMLVGTANVLYMDEI--STGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (875)
Q Consensus 342 gLSGGerkRVsIA~aLv~~p~iLlLDEP--TsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~ 419 (875)
.+||+++.++.+.+..+.+|+++++||| +.++| ..+.+.+.++.+ .+.++|+++|.. .+....|++..+.+
T Consensus 78 ~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~----~~~~~~l~~~~~-~~~~~i~v~h~~--~~~~~~~~i~~~~~ 150 (174)
T PRK13695 78 NLEDLERIGIPALERALEEADVIIIDEIGKMELKS----PKFVKAVEEVLD-SEKPVIATLHRR--SVHPFVQEIKSRPG 150 (174)
T ss_pred ehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh----HHHHHHHHHHHh-CCCeEEEEECch--hhHHHHHHHhccCC
Confidence 3999999999999999999999999995 33444 445566666653 578999988753 45678999999999
Q ss_pred CeEEEec
Q 002833 420 GQIVYQG 426 (875)
Q Consensus 420 G~iv~~G 426 (875)
|++++--
T Consensus 151 ~~i~~~~ 157 (174)
T PRK13695 151 GRVYELT 157 (174)
T ss_pred cEEEEEc
Confidence 9997653
No 448
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.82 E-value=1.2e-08 Score=106.34 Aligned_cols=63 Identities=21% Similarity=0.387 Sum_probs=52.0
Q ss_pred CCCCHHHHHHHHHHHHHhcCC---cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCc
Q 002833 341 RGISGGQKKRVTTGEMLVGTA---NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPA 404 (875)
Q Consensus 341 rgLSGGerkRVsIA~aLv~~p---~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~ 404 (875)
..+|.|+||.+.+...|...+ .++++|||-++|+|.....+++.|+..++ .+.-+|+++|.|.
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~-~~~QviitTHSp~ 300 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSK-KNIQVIITTHSPF 300 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGG-GSSEEEEEES-GG
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCc-cCCEEEEeCccch
Confidence 457999999999998887766 89999999999999999999999988876 4678899888763
No 449
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.82 E-value=1.1e-08 Score=130.61 Aligned_cols=80 Identities=15% Similarity=0.100 Sum_probs=69.7
Q ss_pred cCCCCCHHHHHHHHHHHHHhc----------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHH
Q 002833 339 MRRGISGGQKKRVTTGEMLVG----------TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETY 408 (875)
Q Consensus 339 ~~rgLSGGerkRVsIA~aLv~----------~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~ 408 (875)
.++.|||||++||++|.+|+. +|++||+||||+|||+.+...+++.|+.+.. .|.+|+|+.|.+ ....
T Consensus 947 ~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~-~g~~i~iisH~~-~~~~ 1024 (1042)
T TIGR00618 947 PSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIRE-GSKMIGIISHVP-EFRE 1024 (1042)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCcH-HHHH
Confidence 456799999999999999985 7999999999999999999999999999976 688887776654 4677
Q ss_pred hhcCeEEEEeCC
Q 002833 409 DLFDDIILLSEG 420 (875)
Q Consensus 409 ~lfD~vilL~~G 420 (875)
.++|+|.|+..|
T Consensus 1025 ~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1025 RIPHRILVKKTN 1036 (1042)
T ss_pred hhCCEEEEEECC
Confidence 889999999754
No 450
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.82 E-value=1.5e-08 Score=115.87 Aligned_cols=157 Identities=15% Similarity=0.109 Sum_probs=107.1
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCH
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 262 (875)
...+++++ +.+.+|+.++|+|+||+|||||++.|+|..+++ .|.|.+.|+.. .+|
T Consensus 143 GiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~---~gvI~~iGerg---------------------~ev 197 (432)
T PRK06793 143 GIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKAD---INVISLVGERG---------------------REV 197 (432)
T ss_pred CCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCC---eEEEEeCCCCc---------------------ccH
Confidence 45688885 999999999999999999999999999998875 67666655431 256
Q ss_pred HHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCC
Q 002833 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (875)
Q Consensus 263 ~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (875)
+|.+..-.. .-|+.+. ..| .....
T Consensus 198 ~e~~~~~l~----------------------------------------------------~~gl~~t--vvv--~~tsd 221 (432)
T PRK06793 198 KDFIRKELG----------------------------------------------------EEGMRKS--VVV--VATSD 221 (432)
T ss_pred HHHHHHHhh----------------------------------------------------hccccee--EEE--EECCC
Confidence 665542111 1111110 011 11234
Q ss_pred CCHHHHHHHHHHHHHh-------cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEE
Q 002833 343 ISGGQKKRVTTGEMLV-------GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (875)
Q Consensus 343 LSGGerkRVsIA~aLv-------~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vi 415 (875)
-|.|+|+|+..+.+.+ +++-++++|+||++.|+. .+|-..+.+.-. .|.+..+..|+ +.+ ++|.-
T Consensus 222 ~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~-~G~~~~~~s~l--~~L---~ERag 293 (432)
T PRK06793 222 ESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPI-GGKTLLMESYM--KKL---LERSG 293 (432)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCC-CCeeeeeeccc--hhH---HHHhc
Confidence 8999999999988877 899999999999999996 555555555543 36666665543 344 44444
Q ss_pred EEeCCeEEEecCh
Q 002833 416 LLSEGQIVYQGPR 428 (875)
Q Consensus 416 lL~~G~iv~~Gp~ 428 (875)
...+|.|...+..
T Consensus 294 ~~~~GSiT~~~tv 306 (432)
T PRK06793 294 KTQKGSITGIYTV 306 (432)
T ss_pred cCCCcceEEEEEE
Confidence 4578888665543
No 451
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.78 E-value=1.5e-07 Score=116.85 Aligned_cols=79 Identities=24% Similarity=0.363 Sum_probs=63.0
Q ss_pred HhcCCcEEEEeCCCCCC-CHHHHHHHHHHHHHHHHhCCcEEEEeecCCchh--------HHhhcCeEEEEeCCeEEEecC
Q 002833 357 LVGTANVLYMDEISTGL-DSSTTFQICKFLKQMVHILDVTMIVALLQPAPE--------TYDLFDDIILLSEGQIVYQGP 427 (875)
Q Consensus 357 Lv~~p~iLlLDEPTsGL-Ds~t~~~i~~~L~~l~~~~~~tviisi~q~~~e--------i~~lfD~vilL~~G~iv~~Gp 427 (875)
+.++|+++++|||+.+| |+..+..+.+.++++.+ .+.++++++|++..- +.+.||.+++|.+|++...|.
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK-~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~ 727 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRK-ANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGT 727 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccch
Confidence 36899999999999999 79999999999999876 578888887776532 237899999999999877764
Q ss_pred hhhHHHHHHHcCC
Q 002833 428 RDNVLEFFEHMGF 440 (875)
Q Consensus 428 ~~~~~~~F~~~Gf 440 (875)
. ++++.+|+
T Consensus 728 ~----~~~~~~gl 736 (818)
T PRK13830 728 R----EFYERIGF 736 (818)
T ss_pred H----HHHHHcCC
Confidence 3 34555553
No 452
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.69 E-value=7.9e-08 Score=94.47 Aligned_cols=63 Identities=14% Similarity=0.168 Sum_probs=44.9
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEeCCCCC----------CCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchh
Q 002833 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTG----------LDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE 406 (875)
Q Consensus 343 LSGGerkRVsIA~aLv~~p~iLlLDEPTsG----------LDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~e 406 (875)
.+.++.++...+.+...+|+++++||+++- +|......+.+++.. ++..+.|+|++.|.+..+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 68 PAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLER-ARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HhcCCceEEEEEecCCcc
Confidence 445566677888888999999999999954 444444555444444 455689999998877544
No 453
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=98.68 E-value=2.3e-06 Score=91.72 Aligned_cols=151 Identities=17% Similarity=0.208 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCcchHHHHHHHHHHHHHHHhHHHHHHHHh-hcCCcHHHHHHHHHHHHH
Q 002833 617 WAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVA-AVGRTEVISNTLGTFILL 695 (875)
Q Consensus 617 ~ay~la~~l~~iP~~~~~~~if~~i~Y~m~Gl~~~~~~Ff~f~l~l~l~~~~~~~lf~~ia-a~~~~~~~A~~~~~~~~~ 695 (875)
..+.++..+...-+..+...+...++.+..| ....+.++....++.+...+..+++.+++ .+.++...+..++.++..
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~ 209 (286)
T COG0842 131 LFILLGKIVPYLVVASLIAGLVLLVIAFLLG-VPFLGSLLLLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLIL 209 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5677777787777777777777777777777 33444556666666666667777777555 366778889999999999
Q ss_pred HHHHhcccccCCCCccchhhhhhhhCHHHHHHHHHHHHhhcCCccccCCCCCCCccccccceeecccCccccCcchhhhH
Q 002833 696 IMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGV 775 (875)
Q Consensus 696 ~~~lf~Gf~i~~~~ip~w~~W~~~isP~~Ya~~al~~NEf~~~~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~ 775 (875)
++..++|.+.|.+.+|.|++|+.+++|..|+.+++-..-..+..+ ..+|.++
T Consensus 210 ~~~~l~g~~~p~~~~p~~~~~i~~~~P~t~~~~~~~~~~~~~~~~----------------------------~~~~~~~ 261 (286)
T COG0842 210 PLGFLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVYLGGWRN----------------------------DGIWISL 261 (286)
T ss_pred HHHHHccccCchhhhHHHHHHHHHHccHHHHHHHHHHHHhCCCch----------------------------hhHHHHH
Confidence 999999999999999999999999999999999975443222111 0157888
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 002833 776 GALTGYSFLFNFLFIAALAYL 796 (875)
Q Consensus 776 giL~g~~~~f~~l~~l~L~~~ 796 (875)
++++++.+++.++..+.++..
T Consensus 262 ~~l~~~~~v~~~~~~~~~~~~ 282 (286)
T COG0842 262 LILLLFAVVFLLLGLLLLRRR 282 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999998888877654
No 454
>PRK03918 chromosome segregation protein; Provisional
Probab=98.67 E-value=3.1e-08 Score=124.71 Aligned_cols=78 Identities=21% Similarity=0.232 Sum_probs=66.0
Q ss_pred cCCCCCHHHHHH------HHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcC
Q 002833 339 MRRGISGGQKKR------VTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (875)
Q Consensus 339 ~~rgLSGGerkR------VsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD 412 (875)
.+..|||||+++ +++|++++.+|++++|||||+|||+.....+.+.|+.++. .+.++|+++|++ ++.+.||
T Consensus 785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~-~~~~iiiith~~--~~~~~~d 861 (880)
T PRK03918 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLR-KIPQVIIVSHDE--ELKDAAD 861 (880)
T ss_pred ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHh-cCCEEEEEECCH--HHHHhCC
Confidence 346799999994 5556678899999999999999999999999999999865 356888887775 4778999
Q ss_pred eEEEEeC
Q 002833 413 DIILLSE 419 (875)
Q Consensus 413 ~vilL~~ 419 (875)
++++|..
T Consensus 862 ~~~~l~~ 868 (880)
T PRK03918 862 YVIRVSL 868 (880)
T ss_pred eEEEEEe
Confidence 9999973
No 455
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.66 E-value=2e-08 Score=114.58 Aligned_cols=52 Identities=21% Similarity=0.273 Sum_probs=46.6
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCcc-EEEECCEeCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASG-KITYCGHELNE 240 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG-~I~~nG~~~~~ 240 (875)
..+|++||+.+++||+++|+|||||||||||+ +|+..|. +| +|.++|.++..
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~---sGg~I~ldg~~~~~ 71 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFS---EGYEFFLDATHSFS 71 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCC---CCCEEEECCEECCC
Confidence 45899999999999999999999999999999 7777775 56 89999998865
No 456
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.65 E-value=1.2e-07 Score=98.35 Aligned_cols=57 Identities=16% Similarity=0.118 Sum_probs=40.2
Q ss_pred HHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEe
Q 002833 352 TTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (875)
Q Consensus 352 sIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~ 418 (875)
++.++|..+|+++++|||. |..+...+++ .+. .|..++.++|.++ ..+..||++.|.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l~----~a~-~G~~v~~t~Ha~~--~~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLALT----AAE-TGHLVMSTLHTNS--AAKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHHH----HHH-cCCEEEEEecCCc--HHHHHhHHHhhc
Confidence 4678888899999999996 6655444333 333 5788888888765 346678877663
No 457
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.62 E-value=3e-07 Score=109.12 Aligned_cols=92 Identities=26% Similarity=0.363 Sum_probs=79.3
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEE
Q 002833 339 MRRGISGGQKKRVTTGEMLVGTA--NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (875)
Q Consensus 339 ~~rgLSGGerkRVsIA~aLv~~p--~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vil 416 (875)
....|||||.||+-+|..|=+.= =+++||||+-||-+.....+++.|+++.+ .|-|+|+.-|. +++...+|+|+=
T Consensus 478 ~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRD-lGNTviVVEHD--edti~~AD~iID 554 (935)
T COG0178 478 SAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRD-LGNTVIVVEHD--EDTIRAADHIID 554 (935)
T ss_pred cCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHh-cCCeEEEEecC--HHHHhhcCEEEe
Confidence 34569999999999999885532 47899999999999999999999999987 58899987654 579999999998
Q ss_pred E------eCCeEEEecChhhHHH
Q 002833 417 L------SEGQIVYQGPRDNVLE 433 (875)
Q Consensus 417 L------~~G~iv~~Gp~~~~~~ 433 (875)
| ..|+||++|+++++++
T Consensus 555 iGPgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 555 IGPGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred eCCCCCcCCCEEEEccCHHHHHh
Confidence 7 4689999999999864
No 458
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.62 E-value=2.5e-07 Score=92.90 Aligned_cols=63 Identities=17% Similarity=0.289 Sum_probs=51.1
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCc
Q 002833 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPA 404 (875)
Q Consensus 340 ~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~ 404 (875)
....|-||-=---+.+.+.+ .-+++||||-++|-+.-+..+...|+++++ .|.-+||++|.|.
T Consensus 127 Lh~~SHGEsf~~i~~~rf~~-~GiYiLDEPEa~LSp~RQlella~l~~la~-sGaQ~IiATHSPi 189 (233)
T COG3910 127 LHHMSHGESFLAIFHNRFNG-QGIYILDEPEAALSPSRQLELLAILRDLAD-SGAQIIIATHSPI 189 (233)
T ss_pred hhhhccchHHHHHHHHHhcc-CceEEecCccccCCHHHHHHHHHHHHHHHh-cCCeEEEEecChh
Confidence 34578888755555555544 489999999999999999999999999997 4788888888774
No 459
>PRK01156 chromosome segregation protein; Provisional
Probab=98.59 E-value=1.4e-07 Score=119.00 Aligned_cols=78 Identities=18% Similarity=0.186 Sum_probs=64.9
Q ss_pred cCCCCCHHHHHHHHH------HHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCC--cEEEEeecCCchhHHhh
Q 002833 339 MRRGISGGQKKRVTT------GEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILD--VTMIVALLQPAPETYDL 410 (875)
Q Consensus 339 ~~rgLSGGerkRVsI------A~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~--~tviisi~q~~~ei~~l 410 (875)
.+..||||||+|++| |++++.+|++++|||||+|||+.....+.+.|+...+..+ .++|+++|++. ....
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~--~~~~ 875 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRE--LLSV 875 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchH--HHHh
Confidence 356799999999975 4899999999999999999999999999999986544332 37777777653 5578
Q ss_pred cCeEEEEe
Q 002833 411 FDDIILLS 418 (875)
Q Consensus 411 fD~vilL~ 418 (875)
||+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999997
No 460
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.58 E-value=6.6e-07 Score=95.10 Aligned_cols=76 Identities=16% Similarity=0.137 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHHHHHhc--CCcEEEEeCCCCC---CCHHHHHHHHHHHHHHHHhCCcEEEEeecCCch------hHHhhc
Q 002833 343 ISGGQKKRVTTGEMLVG--TANVLYMDEISTG---LDSSTTFQICKFLKQMVHILDVTMIVALLQPAP------ETYDLF 411 (875)
Q Consensus 343 LSGGerkRVsIA~aLv~--~p~iLlLDEPTsG---LDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~------ei~~lf 411 (875)
.|.++++.+.....++. +|+++++||||+. +|.....++++.++.+++ .+.|++++.|++.. .+..++
T Consensus 101 ~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~-~g~tvllt~~~~~~~~~~~~~~~~l~ 179 (234)
T PRK06067 101 NSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVD-LGKTILITLHPYAFSEELLSRIRSIC 179 (234)
T ss_pred CcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcCCHHHHHHHHhhe
Confidence 46788899999988887 9999999999965 445555555556666665 47888888776542 145667
Q ss_pred CeEEEEeC
Q 002833 412 DDIILLSE 419 (875)
Q Consensus 412 D~vilL~~ 419 (875)
|-++.|+.
T Consensus 180 DgvI~L~~ 187 (234)
T PRK06067 180 DVYLKLRA 187 (234)
T ss_pred EEEEEEEe
Confidence 87877763
No 461
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.55 E-value=1.3e-07 Score=120.57 Aligned_cols=78 Identities=22% Similarity=0.115 Sum_probs=63.4
Q ss_pred ccCCCCCHHHHHHHHHHHHHhc--------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHh
Q 002833 338 EMRRGISGGQKKRVTTGEMLVG--------TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD 409 (875)
Q Consensus 338 ~~~rgLSGGerkRVsIA~aLv~--------~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~ 409 (875)
..++.|||||+++|+||++|+. +|++||+||||+|||+.+...+++.|+.+.+ .|++|+|+.|. +++.+
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~-~g~~v~iisH~--~~l~~ 1021 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNA-SGKTIGVISHV--EAMKE 1021 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEecH--HHHHH
Confidence 3456799999999999999995 8999999999999999999999999999976 58898888773 23333
Q ss_pred -hcCeEEEEe
Q 002833 410 -LFDDIILLS 418 (875)
Q Consensus 410 -lfD~vilL~ 418 (875)
+-.+|.|-.
T Consensus 1022 ~i~~qi~V~k 1031 (1047)
T PRK10246 1022 RIPVQIKVKK 1031 (1047)
T ss_pred hccceEEEEE
Confidence 344444544
No 462
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=98.54 E-value=4e-07 Score=90.55 Aligned_cols=114 Identities=7% Similarity=-0.102 Sum_probs=85.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCcchH--HHHHHHHHHHHHHHhHHHHHHHHhhcCCcHHHHHHHHHH
Q 002833 615 PSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAAS--RFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTF 692 (875)
Q Consensus 615 ~~~ay~la~~l~~iP~~~~~~~if~~i~Y~m~Gl~~~~~--~Ff~f~l~l~l~~~~~~~lf~~iaa~~~~~~~A~~~~~~ 692 (875)
+.+.|.+++++...-..+++.++..++.++ .|++...+ ..+.++++..+...+...++..++...++... .....+
T Consensus 30 ~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~~a~~~~~~~~-~~~~~~ 107 (152)
T TIGR01248 30 HRASALLARIIAETIRAFIGTILILAIALA-LGFRFRNGVAAALLFLLIPSIFGIAFAALVMAMALRKEGRFA-MEALEL 107 (152)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHH
Confidence 678999999999999999998877777754 48887642 23333333444455555666666555555543 334567
Q ss_pred HHHHHHHhcccccCCCCccchhhhhhhhCHHHHHHHHH
Q 002833 693 ILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSL 730 (875)
Q Consensus 693 ~~~~~~lf~Gf~i~~~~ip~w~~W~~~isP~~Ya~~al 730 (875)
+.+++..++|.+.|.++||+|++|+-+++|++|+.+++
T Consensus 108 v~~pl~flsg~~~P~~~mP~wlq~ia~~~Plt~~~~~~ 145 (152)
T TIGR01248 108 AQAAAAFLNPGATPIKLFPDWAQPLIAHQPISPAIEAC 145 (152)
T ss_pred HHHHHHHHhhhhcCHHhCcHHHHHHHhhCCccHHHHHH
Confidence 77788888899999999999999999999999999986
No 463
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.52 E-value=2.7e-07 Score=94.77 Aligned_cols=84 Identities=23% Similarity=0.180 Sum_probs=62.3
Q ss_pred cccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCC--CCCCCCCHH
Q 002833 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHD--LHHGEMTVR 263 (875)
Q Consensus 186 IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d--~~~~~lTV~ 263 (875)
+.+=+.+.+++|+.++|+||||||||||+++|+|.++++ .|.|.+.+..-........++++.|.+ ...+..|+.
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~---~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPD---ERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMA 90 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHH
Confidence 344455668899999999999999999999999999875 899999774322222234566666544 346778999
Q ss_pred HHHHHhhhh
Q 002833 264 ETLDFSGRC 272 (875)
Q Consensus 264 EtL~f~a~~ 272 (875)
+.+..+.+.
T Consensus 91 ~~l~~~lR~ 99 (186)
T cd01130 91 DLLRSALRM 99 (186)
T ss_pred HHHHHHhcc
Confidence 999887654
No 464
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.50 E-value=8.8e-08 Score=109.62 Aligned_cols=90 Identities=16% Similarity=0.183 Sum_probs=73.8
Q ss_pred cccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc---------cCceEEEEec
Q 002833 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---------PQRTCAYISQ 252 (875)
Q Consensus 182 ~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~---------~~~~~~yv~Q 252 (875)
....+|+++ +.+.+|+.++|+|+||+|||||+++|+|..+++..+-|.|-.+|.++.++. .+..++|++|
T Consensus 141 TGi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~ 219 (434)
T PRK07196 141 VGVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPA 219 (434)
T ss_pred cceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecC
Confidence 346799999 999999999999999999999999999998876433466767776654321 2346899999
Q ss_pred CCCCCCCCCHHHHHHHhhhh
Q 002833 253 HDLHHGEMTVRETLDFSGRC 272 (875)
Q Consensus 253 ~d~~~~~lTV~EtL~f~a~~ 272 (875)
++..+..+++.|++.+.+..
T Consensus 220 d~s~~~rl~a~e~a~~iAEy 239 (434)
T PRK07196 220 DESPLMRIKATELCHAIATY 239 (434)
T ss_pred CCChhhhHHHHHHHHHHHHH
Confidence 99999999999999887654
No 465
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.47 E-value=7.3e-07 Score=103.46 Aligned_cols=71 Identities=27% Similarity=0.412 Sum_probs=55.3
Q ss_pred ccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHHH
Q 002833 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRE 264 (875)
Q Consensus 185 ~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 264 (875)
.++++.+..++.|++++++||||+||||++..|++.+... .|. +.++++.+|. ...++.|
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~---~G~--------------~kV~LI~~Dt---~RigA~E 303 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMR---HGA--------------SKVALLTTDS---YRIGGHE 303 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHh---cCC--------------CeEEEEeCCc---cchhHHH
Confidence 3566777778899999999999999999999999987542 232 2567888764 4468999
Q ss_pred HHHHhhhhcCC
Q 002833 265 TLDFSGRCLGV 275 (875)
Q Consensus 265 tL~f~a~~~~~ 275 (875)
+|.+.++..+.
T Consensus 304 QLr~~AeilGV 314 (484)
T PRK06995 304 QLRIYGKILGV 314 (484)
T ss_pred HHHHHHHHhCC
Confidence 99987776554
No 466
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.43 E-value=1.5e-06 Score=92.66 Aligned_cols=46 Identities=11% Similarity=0.156 Sum_probs=38.4
Q ss_pred HhcCCcEEEEeCCCC------CCCHHHHHHHHHHHHHHHHhCCcEEEEeecCC
Q 002833 357 LVGTANVLYMDEIST------GLDSSTTFQICKFLKQMVHILDVTMIVALLQP 403 (875)
Q Consensus 357 Lv~~p~iLlLDEPTs------GLDs~t~~~i~~~L~~l~~~~~~tviisi~q~ 403 (875)
...+|+++++| |.+ .+|+....++++.|+++++..+.+++++.|..
T Consensus 108 ~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 108 LIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred HhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 35799999999 665 47999999999999999987788888875544
No 467
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.43 E-value=2.8e-07 Score=119.06 Aligned_cols=76 Identities=20% Similarity=0.296 Sum_probs=65.1
Q ss_pred cCCCCCHHHHHHHHHHHHHh----cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeE
Q 002833 339 MRRGISGGQKKRVTTGEMLV----GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (875)
Q Consensus 339 ~~rgLSGGerkRVsIA~aLv----~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~v 414 (875)
.+..||||||+|++||++++ .+|+++||||||+|||+.+...+.++|+.+++ +.++|++.|++. ....||++
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~--~~~~i~~sh~~~--~~~~~d~~ 1161 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK--NTQFIVITHNKG--TMEVADQL 1161 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc--CCEEEEEEcChh--HHHHhhhH
Confidence 45579999999999999984 78899999999999999999999999999875 467888777754 45789999
Q ss_pred EEEe
Q 002833 415 ILLS 418 (875)
Q Consensus 415 ilL~ 418 (875)
+.+.
T Consensus 1162 ~~~~ 1165 (1179)
T TIGR02168 1162 YGVT 1165 (1179)
T ss_pred eeee
Confidence 8664
No 468
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.42 E-value=3.9e-07 Score=118.93 Aligned_cols=77 Identities=23% Similarity=0.264 Sum_probs=61.9
Q ss_pred cccccCccCCCCCHHHHH------HHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH----hCCcEEEEeec
Q 002833 332 DTMVGDEMRRGISGGQKK------RVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVH----ILDVTMIVALL 401 (875)
Q Consensus 332 dt~vg~~~~rgLSGGerk------RVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~----~~~~tviisi~ 401 (875)
||.++ +...||||||| |++||++++.+|++|+|||||+|||+.+...+.+.|..+.. ..+.++|++.|
T Consensus 1191 ~~~~~--~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitH 1268 (1311)
T TIGR00606 1191 DTALD--MRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITH 1268 (1311)
T ss_pred CeecC--CCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEec
Confidence 55554 23469999999 99999999999999999999999999999999999988742 23678888765
Q ss_pred CCchhHHhhc
Q 002833 402 QPAPETYDLF 411 (875)
Q Consensus 402 q~~~ei~~lf 411 (875)
.+ ..+..+|
T Consensus 1269 d~-~~~~~~~ 1277 (1311)
T TIGR00606 1269 DE-DFVELLG 1277 (1311)
T ss_pred CH-HHHHHHh
Confidence 54 4555554
No 469
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.38 E-value=5.2e-07 Score=116.75 Aligned_cols=77 Identities=18% Similarity=0.252 Sum_probs=66.5
Q ss_pred cCCCCCHHHHHHHHHHHHHhc----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeE
Q 002833 339 MRRGISGGQKKRVTTGEMLVG----TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (875)
Q Consensus 339 ~~rgLSGGerkRVsIA~aLv~----~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~v 414 (875)
.+..||||||++++||.+++. +|++++||||++|||+.....+.+.|+.+++ +..+|+++|++ .++..||++
T Consensus 1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~--~~~~i~~t~~~--~~~~~~d~~ 1146 (1164)
T TIGR02169 1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG--EAQFIVVSLRS--PMIEYADRA 1146 (1164)
T ss_pred cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC--CCeEEEEECcH--HHHHhccee
Confidence 356799999999999999984 7899999999999999999999999999864 45677777776 477999999
Q ss_pred EEEeC
Q 002833 415 ILLSE 419 (875)
Q Consensus 415 ilL~~ 419 (875)
+.+..
T Consensus 1147 ~~~~~ 1151 (1164)
T TIGR02169 1147 IGVTM 1151 (1164)
T ss_pred EeEEE
Confidence 98764
No 470
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.35 E-value=1.3e-05 Score=75.51 Aligned_cols=59 Identities=22% Similarity=0.193 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHH-----HHHHHHHhCCcEEEEeec
Q 002833 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICK-----FLKQMVHILDVTMIVALL 401 (875)
Q Consensus 343 LSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~-----~L~~l~~~~~~tviisi~ 401 (875)
..+++..+..+..+--.+|.++++||+..-.+......... .........+..+|++.+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 61 GSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTN 124 (148)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeC
Confidence 66777777777777777789999999999999998887765 223333334666777655
No 471
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=98.35 E-value=4.2e-07 Score=84.38 Aligned_cols=62 Identities=18% Similarity=0.315 Sum_probs=55.0
Q ss_pred cccccceeec-ccCccccCcchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcceeeccchhh
Q 002833 751 QPTIGKVLLK-IRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGEKQ 814 (875)
Q Consensus 751 ~~~~G~~~L~-~~g~~~~~~~~w~~~giL~g~~~~f~~l~~l~L~~~~~~~~~~~~~~~~~~~~~ 814 (875)
..+.|++||+ ++|+..++ .|||+|||++|+++|.++.+++++++++...+..++++++++.+
T Consensus 29 ~~V~G~~YL~~~y~y~~sh--~WRN~GIli~f~i~f~~~~~~~~e~~~~~~~~~~~l~f~r~~~~ 91 (103)
T PF06422_consen 29 TYVSGDDYLEESYGYSYSH--RWRNFGILIAFWIFFIVLTLLATEFIKFEKSGGEVLVFKRGKAP 91 (103)
T ss_pred cEEeHHHHHhhhccccccc--hhhhHHHHHHHHHHHHHHHHHHHHHhcccCCCccEEEEeCCccc
Confidence 4567999997 78998755 69999999999999999999999999999999999999987653
No 472
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.25 E-value=6.9e-06 Score=92.47 Aligned_cols=55 Identities=15% Similarity=0.081 Sum_probs=38.2
Q ss_pred HHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEE
Q 002833 353 TGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (875)
Q Consensus 353 IA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL 417 (875)
+..+|-.+|+++++||+. |..++...++. + ..|.+++.++|..+ .....+|++-|
T Consensus 188 l~~~lr~~pd~i~vgEir---d~~~~~~~l~a----a-~tGh~v~~T~Ha~~--~~~~~~Rl~~~ 242 (343)
T TIGR01420 188 LRAALREDPDVILIGEMR---DLETVELALTA----A-ETGHLVFGTLHTNS--AAQTIERIIDV 242 (343)
T ss_pred HHHhhccCCCEEEEeCCC---CHHHHHHHHHH----H-HcCCcEEEEEcCCC--HHHHHHHHHHh
Confidence 556777899999999997 88888665553 2 25778888877654 33445555443
No 473
>PRK02224 chromosome segregation protein; Provisional
Probab=98.25 E-value=2.1e-06 Score=108.37 Aligned_cols=77 Identities=25% Similarity=0.349 Sum_probs=63.7
Q ss_pred CCCCCHHHHH------HHHHHHHHhcC------CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCc-EEEEeecCCchh
Q 002833 340 RRGISGGQKK------RVTTGEMLVGT------ANVLYMDEISTGLDSSTTFQICKFLKQMVHILDV-TMIVALLQPAPE 406 (875)
Q Consensus 340 ~rgLSGGerk------RVsIA~aLv~~------p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~-tviisi~q~~~e 406 (875)
+..||||||+ |++++++++.+ ++++++||||+|||+.....+++.|+.+.+ .+. ++|++.|++ +
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~-~~~~qviiish~~--~ 855 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRR-LGVEQIVVVSHDD--E 855 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHh-cCCCeEEEEECCh--H
Confidence 4579999999 89999888853 267999999999999999999999999875 344 677777775 4
Q ss_pred HHhhcCeEEEEeC
Q 002833 407 TYDLFDDIILLSE 419 (875)
Q Consensus 407 i~~lfD~vilL~~ 419 (875)
....+|+++.|..
T Consensus 856 ~~~~ad~~~~~~~ 868 (880)
T PRK02224 856 LVGAADDLVRVEK 868 (880)
T ss_pred HHHhcCeeEEeec
Confidence 4578999999964
No 474
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.24 E-value=2.8e-05 Score=97.41 Aligned_cols=70 Identities=19% Similarity=0.257 Sum_probs=51.8
Q ss_pred HHHHHhcCCcEEEEeCCCCCC-CHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHh--hcCeEEEEeCCeEEE
Q 002833 353 TGEMLVGTANVLYMDEISTGL-DSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD--LFDDIILLSEGQIVY 424 (875)
Q Consensus 353 IA~aLv~~p~iLlLDEPTsGL-Ds~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~--lfD~vilL~~G~iv~ 424 (875)
|++++.++|+++++|||+.+| |+..+..+.+.++.+.+ .+.++++++|++. ++.+ .++.++-..+.+|..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK-~g~~vil~TQs~~-d~~~s~i~~~ilen~~t~I~L 752 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRK-ANCLVLMATQSLS-DAANSGILDVIVESTATKIFL 752 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHhhCchHHHHHHcCCcceec
Confidence 567888999999999999999 79999999999999876 5778888776654 4433 344444444455543
No 475
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.20 E-value=5.7e-07 Score=105.73 Aligned_cols=80 Identities=14% Similarity=0.171 Sum_probs=56.0
Q ss_pred HHhCCCccccccccCccCCCCCHHHHHHHHHH--HHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEee
Q 002833 323 KILGLDICADTMVGDEMRRGISGGQKKRVTTG--EMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVAL 400 (875)
Q Consensus 323 ~~lgL~~~~dt~vg~~~~rgLSGGerkRVsIA--~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi 400 (875)
+.+++++..+.+.. .+|+|++|||.|+ .+|...|+.. ...+.++.++++.+.+ .+.|++++.
T Consensus 101 ~~~~l~~~l~~i~~-----~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~~-~g~TvLLts 164 (484)
T TIGR02655 101 GGFDLSALIERINY-----AIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLKQ-IGVTTVMTT 164 (484)
T ss_pred ccCCHHHHHHHHHH-----HHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHHH-CCCEEEEEe
Confidence 34555555554443 4999999999999 5555554333 4677788888888865 689999998
Q ss_pred cCCchh-------H-HhhcCeEEEEe
Q 002833 401 LQPAPE-------T-YDLFDDIILLS 418 (875)
Q Consensus 401 ~q~~~e-------i-~~lfD~vilL~ 418 (875)
|+.... + ..++|.|+.|+
T Consensus 165 h~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 165 ERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred cCcccccccccCCceeEeeeeEEEEE
Confidence 875421 1 44789999997
No 476
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.20 E-value=5.9e-06 Score=95.41 Aligned_cols=52 Identities=23% Similarity=0.295 Sum_probs=44.4
Q ss_pred cccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEe
Q 002833 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237 (875)
Q Consensus 182 ~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~ 237 (875)
....+++++ +.+.+|+.++|+|+||+|||||+++|+|..+++ .|.+...|..
T Consensus 149 TGi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~---~~vi~~iG~r 200 (440)
T TIGR01026 149 TGVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEAD---VNVIALIGER 200 (440)
T ss_pred ceeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC---EEEEEEEeec
Confidence 456799999 999999999999999999999999999998876 5666555543
No 477
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.17 E-value=1.5e-06 Score=99.63 Aligned_cols=72 Identities=24% Similarity=0.342 Sum_probs=57.7
Q ss_pred cccccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECC---EeCCCCc-------cCceEEE
Q 002833 180 KKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCG---HELNEFV-------PQRTCAY 249 (875)
Q Consensus 180 ~~~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG---~~~~~~~-------~~~~~~y 249 (875)
......+++.++ .|.+|+.++|+|||||||||||++|++..+++ .|.|.+.| .++.++. .++.+++
T Consensus 149 l~TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd---~gvv~liGergrev~e~~~~~l~~~r~rtI~v 224 (450)
T PRK06002 149 LRTGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFD---TVVIALVGERGREVREFLEDTLADNLKKAVAV 224 (450)
T ss_pred cCCCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---eeeeeecccCCccHHHHhHHHHHHhhCCeEEE
Confidence 334567888886 89999999999999999999999999998886 78888864 5543321 2367999
Q ss_pred EecCCC
Q 002833 250 ISQHDL 255 (875)
Q Consensus 250 v~Q~d~ 255 (875)
|+|.|.
T Consensus 225 V~qsd~ 230 (450)
T PRK06002 225 VATSDE 230 (450)
T ss_pred EEcCCC
Confidence 999864
No 478
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.11 E-value=3.9e-06 Score=86.75 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
+++|.||||||||||.++|++.+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999999987
No 479
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.07 E-value=1.8e-06 Score=87.94 Aligned_cols=68 Identities=13% Similarity=0.108 Sum_probs=49.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc--CceEEEEecCCCCCCCCCHHHHHHHhh
Q 002833 196 PSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP--QRTCAYISQHDLHHGEMTVRETLDFSG 270 (875)
Q Consensus 196 pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~--~~~~~yv~Q~d~~~~~lTV~EtL~f~a 270 (875)
+||+++|+|+||||||||+++|+|++.+ +.++|.++..... +...++.+|+...++..++.+++.+..
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~-------~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 71 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA-------KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYSL 71 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC-------EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHHH
Confidence 6999999999999999999999998765 4777776543211 123466666655566677777776543
No 480
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.05 E-value=0.00029 Score=75.45 Aligned_cols=193 Identities=10% Similarity=0.079 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccc-cCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 002833 525 RACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRT-EMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLP 603 (875)
Q Consensus 525 ~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~gt~F~~~-~~~~~~~~~~~~~~g~lFf~~~~~~~~~~~el~~~~~~rp 603 (875)
++..+||++...|.|..|+.-.+-.++.|+.. ..|... +....+..+...+.+...+ ++...... + .-.
T Consensus 2 ~~i~~kEl~~~f~sp~~yv~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~f~~~~~--~~~~~~p~--l-----~~~ 71 (240)
T TIGR03518 2 KAIFKKEFNSFFSSPIGYLVIAVFLLANGLFL-WVFPGDFNILDYGYADLTPFFSLAPW--VFLFLIPA--I-----TMR 71 (240)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HHHhhhhhHHhcCcchHHHHHHHHHH--HHHHHHHH--H-----HHH
Confidence 57889999999999999988777777777442 222110 1001111122222222111 11111110 1 124
Q ss_pred HHHHHhhcCcc--------chHHHHHHHHHHHHHHHHHHH---hhhheeeeeccC--CCcchHHHHHHHHHHHHHHHhHH
Q 002833 604 IFYKQRDHLFY--------PSWAFALPIWLLRIPISILDS---TIWVALTYYTIG--YDPAASRFFKQFLAFFSIHNMSL 670 (875)
Q Consensus 604 vf~kqr~~~~Y--------~~~ay~la~~l~~iP~~~~~~---~if~~i~Y~m~G--l~~~~~~Ff~f~l~l~l~~~~~~ 670 (875)
.+-+||+.+.. +.+.+.++|++.-.-+.++.. +++....++... -..+.+.++..++.+++...+..
T Consensus 72 ~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 151 (240)
T TIGR03518 72 SFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQLGNPVGNLDIGSTFGSYIGLLLLGSVYT 151 (240)
T ss_pred HHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHH
Confidence 67788887764 467889999888765443322 112222111111 12356677767777777778888
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhhCHHHHHHH
Q 002833 671 PLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQT 728 (875)
Q Consensus 671 ~lf~~iaa~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~w~~W~~~isP~~Ya~~ 728 (875)
+++.++++++++..+|..++.....++.+..+++.+. ..|+|..|+.|+||..|-.+
T Consensus 152 aig~~iSsl~~~q~~a~~~~~~~~~~l~~~~~~l~~~-~~~~~~~~l~~~sp~~~~~~ 208 (240)
T TIGR03518 152 AIGLFASSLTENQIVAFIIAVFLCFLFYFGFDGLASL-LWGGSAYTISELGLSYHYES 208 (240)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhh-cchhHHHHHHHcCHHHHHHH
Confidence 9999999999999988766544333222211222111 24889999999999776433
No 481
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.97 E-value=2.2e-05 Score=83.04 Aligned_cols=33 Identities=30% Similarity=0.462 Sum_probs=27.5
Q ss_pred cccce-eEEEeCCeEEEEEcCCCCCHHHHHHHHh
Q 002833 186 ILKDV-SGIVKPSRMTLLLGPPGAGKTTLMLALA 218 (875)
Q Consensus 186 IL~~v-s~~i~pGe~~~llGpnGSGKSTLLk~La 218 (875)
-|+.+ .+=+++|++++|.||||+|||||...++
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~ 41 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFA 41 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHH
Confidence 45553 5678999999999999999999988665
No 482
>PRK01889 GTPase RsgA; Reviewed
Probab=97.94 E-value=9.2e-06 Score=91.84 Aligned_cols=78 Identities=21% Similarity=0.245 Sum_probs=57.7
Q ss_pred ccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHHHHH
Q 002833 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETL 266 (875)
Q Consensus 187 L~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~EtL 266 (875)
++.+.-.+++|++++|+|+||+|||||+++|+|...+. +|+|.+++.........+.+.+++|...++.+ ....++
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~---~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~Dt-pG~~~~ 260 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQK---TGAVREDDSKGRHTTTHRELHPLPSGGLLIDT-PGMREL 260 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccc---eeeEEECCCCCcchhhhccEEEecCCCeecCC-Cchhhh
Confidence 45555567899999999999999999999999998875 89999987543222334678889887665543 333344
Q ss_pred HH
Q 002833 267 DF 268 (875)
Q Consensus 267 ~f 268 (875)
.+
T Consensus 261 ~l 262 (356)
T PRK01889 261 QL 262 (356)
T ss_pred cc
Confidence 33
No 483
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.91 E-value=1.3e-05 Score=67.28 Aligned_cols=37 Identities=32% Similarity=0.456 Sum_probs=29.9
Q ss_pred ccceeEEEeC-CeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 002833 187 LKDVSGIVKP-SRMTLLLGPPGAGKTTLMLALAGKLGK 223 (875)
Q Consensus 187 L~~vs~~i~p-Ge~~~llGpnGSGKSTLLk~LaG~l~~ 223 (875)
.++.++.+.+ |.+++|.|||||||||||++|.=.+-+
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3445677775 569999999999999999999876654
No 484
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=97.91 E-value=3.5e-05 Score=96.27 Aligned_cols=69 Identities=16% Similarity=0.150 Sum_probs=46.3
Q ss_pred CCCCHHHHHHHHHHHHHh--cCCcEEEEeCC---CCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCe
Q 002833 341 RGISGGQKKRVTTGEMLV--GTANVLYMDEI---STGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (875)
Q Consensus 341 rgLSGGerkRVsIA~aLv--~~p~iLlLDEP---TsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~ 413 (875)
+|.|-=+.-...++.+|- ++++++++||| |+.+|... .....++.+.+..+.++++++|. .++.+++++
T Consensus 665 ~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~a--ia~aile~l~~~~~~~~l~aTH~--~el~~l~~~ 738 (854)
T PRK05399 665 SGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLS--IAWAVAEYLHDKIGAKTLFATHY--HELTELEEK 738 (854)
T ss_pred cCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHH--HHHHHHHHHHhcCCceEEEEech--HHHHHHhhh
Confidence 456665555666666654 58999999999 88888544 23344555554445788888776 467777765
No 485
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=97.88 E-value=0.00047 Score=86.20 Aligned_cols=47 Identities=26% Similarity=0.282 Sum_probs=39.6
Q ss_pred HHhcCCcEEEEeCCCCCCC-HHHHHHHHHHHHHHHHhCCcEEEEeecCC
Q 002833 356 MLVGTANVLYMDEISTGLD-SSTTFQICKFLKQMVHILDVTMIVALLQP 403 (875)
Q Consensus 356 aLv~~p~iLlLDEPTsGLD-s~t~~~i~~~L~~l~~~~~~tviisi~q~ 403 (875)
.+.++|.++++|||..+|| +..+..+.+.++++.+ .+..+++++|.|
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK-~~~~~i~~TQ~~ 685 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRK-LNTFVIFATQSV 685 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH
Confidence 4568999999999999999 8888899999999865 577777776665
No 486
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.83 E-value=3.1e-05 Score=90.18 Aligned_cols=63 Identities=10% Similarity=0.107 Sum_probs=44.9
Q ss_pred cCCcEEEEeCCCCCC----C-----HHHHHHHHHHHHHHHHhCCcEEEEeecCCch-------hHHhhcCeEEEEeCCe
Q 002833 359 GTANVLYMDEISTGL----D-----SSTTFQICKFLKQMVHILDVTMIVALLQPAP-------ETYDLFDDIILLSEGQ 421 (875)
Q Consensus 359 ~~p~iLlLDEPTsGL----D-----s~t~~~i~~~L~~l~~~~~~tviisi~q~~~-------ei~~lfD~vilL~~G~ 421 (875)
.+|+++++|..++=. + .....+++..|.++++..+.|++++.|...+ .+..++|.|+.|+.++
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 478999999987621 1 2234566777888888889999998664322 1456899999998654
No 487
>PRK08149 ATP synthase SpaL; Validated
Probab=97.80 E-value=1.4e-05 Score=91.72 Aligned_cols=70 Identities=26% Similarity=0.365 Sum_probs=56.8
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc-------CceEEEEecC
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQH 253 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~-------~~~~~yv~Q~ 253 (875)
...+|+++ +.+.+|+.++|+|+||+||||||++|++..+++..+-|.|-.+|+++.++.. .+.+++|...
T Consensus 138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~ 214 (428)
T PRK08149 138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYAT 214 (428)
T ss_pred CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEEC
Confidence 45799999 9999999999999999999999999999988874455999999998754321 2456666554
No 488
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.76 E-value=0.00069 Score=73.47 Aligned_cols=39 Identities=23% Similarity=0.375 Sum_probs=34.5
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l 221 (875)
..+.|+++.+-+++|++++|.|+||+|||||+..++-..
T Consensus 16 g~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~ 54 (271)
T cd01122 16 PFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDL 54 (271)
T ss_pred CcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 456899998999999999999999999999999887543
No 489
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.74 E-value=8.1e-05 Score=94.25 Aligned_cols=86 Identities=20% Similarity=0.232 Sum_probs=69.9
Q ss_pred ccccccCc--cCCCCCHHHHHHHHHHHHH------hcC--CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEee
Q 002833 331 ADTMVGDE--MRRGISGGQKKRVTTGEML------VGT--ANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVAL 400 (875)
Q Consensus 331 ~dt~vg~~--~~rgLSGGerkRVsIA~aL------v~~--p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi 400 (875)
.++..|+. .+..|||||+=.++||-+| .++ -++|||||||..||+.+...+++.|..+... +.+|+|++
T Consensus 802 ~~~~~~~~~r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~-~~qiiIIS 880 (908)
T COG0419 802 VVVYDGGEVRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSD-GRQIIIIS 880 (908)
T ss_pred EEEecCCCccccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhc-CCeEEEEe
Confidence 34444444 6778999999988887554 355 6999999999999999999999999999874 77888877
Q ss_pred cCCchhHHhhcCeEEEEeC
Q 002833 401 LQPAPETYDLFDDIILLSE 419 (875)
Q Consensus 401 ~q~~~ei~~lfD~vilL~~ 419 (875)
|++ +..+.+|.++.+..
T Consensus 881 H~e--el~e~~~~~i~V~k 897 (908)
T COG0419 881 HVE--ELKERADVRIRVKK 897 (908)
T ss_pred ChH--HHHHhCCeEEEEEe
Confidence 764 67789999999865
No 490
>PF12679 ABC2_membrane_2: ABC-2 family transporter protein
Probab=97.74 E-value=0.0036 Score=67.53 Aligned_cols=163 Identities=17% Similarity=0.141 Sum_probs=92.8
Q ss_pred hhHHHHHhhcCc--------cchHHHHHHHHHHHHHHHHH--HHhhhh--e-eeeec-cCCCcchHHHHHHHHHHHHHHH
Q 002833 602 LPIFYKQRDHLF--------YPSWAFALPIWLLRIPISIL--DSTIWV--A-LTYYT-IGYDPAASRFFKQFLAFFSIHN 667 (875)
Q Consensus 602 rpvf~kqr~~~~--------Y~~~ay~la~~l~~iP~~~~--~~~if~--~-i~Y~m-~Gl~~~~~~Ff~f~l~l~l~~~ 667 (875)
-..+-+||+.+- ++-+.+.++|++.-+...++ -+.+.+ + +.++. .|.+.+...++...+...+..+
T Consensus 87 ~~~ia~E~e~gTi~~lls~PisR~~i~~gK~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (277)
T PF12679_consen 87 SDLIAGERERGTIELLLSKPISRSEILLGKFLAAILFSLLLLIALLVGYLLTLVLIAISGIPIDLSSFLLLLLLFVLLLL 166 (277)
T ss_pred HHHHHhccccCEeeHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHH
Confidence 356778887653 34578999999998877432 111111 1 11222 4556666666655544443333
Q ss_pred ---hHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhccccc-CCCCccchh-----hhhhhhCHHHHHHHHHHHHhhcCC
Q 002833 668 ---MSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVM-AKDDIEPFL-----RWGYYISPMMYGQTSLLVNEFLGG 738 (875)
Q Consensus 668 ---~~~~lf~~iaa~~~~~~~A~~~~~~~~~~~~lf~Gf~i-~~~~ip~w~-----~W~~~isP~~Ya~~al~~NEf~~~ 738 (875)
+..+++.++++++++...|...+..+............ ..++ +.|. ..+.|++|..+ ++.+..+...+.
T Consensus 167 ~~~~~~sl~~~~S~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~ 244 (277)
T PF12679_consen 167 AVLVFISLGLLISSLFRSSASAILASLGLLFLLFFLYPIIVFSIAN-SEALPWVISPNLSFLSPFSP-FNLLIGSILGGG 244 (277)
T ss_pred HHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhhhHhHHHHcChHHH-HHHHHHHhhccc
Confidence 45889999999999988888877765555433333222 1111 1232 23467777653 222221111100
Q ss_pred ccccCCCCCCCccccccceeecccCccccCcchhhhHHHHHHHHHHHHHHHHHHH
Q 002833 739 RWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAAL 793 (875)
Q Consensus 739 ~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~giL~g~~~~f~~l~~l~L 793 (875)
. . . .+.|.++++++++.++|.++++...
T Consensus 245 ~-----------~-----~-----------~~~~~~~~~~~~~~~v~l~la~~~F 272 (277)
T PF12679_consen 245 F-----------V-----W-----------LSTWPSLLILLAYTLVFLALAYYRF 272 (277)
T ss_pred c-----------c-----h-----------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 0 3458899999999999988888544
No 491
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.74 E-value=1.2e-05 Score=84.00 Aligned_cols=29 Identities=31% Similarity=0.394 Sum_probs=26.9
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 002833 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (875)
Q Consensus 195 ~pGe~~~llGpnGSGKSTLLk~LaG~l~~ 223 (875)
++|++++|.||||||||||+++|++.+++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 68999999999999999999999998763
No 492
>PRK13764 ATPase; Provisional
Probab=97.73 E-value=0.00019 Score=85.64 Aligned_cols=64 Identities=22% Similarity=0.324 Sum_probs=43.7
Q ss_pred HhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecC--------------CchhHHhhcCeEEEEeCCeE
Q 002833 357 LVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQ--------------PAPETYDLFDDIILLSEGQI 422 (875)
Q Consensus 357 Lv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q--------------~~~ei~~lfD~vilL~~G~i 422 (875)
|..+|+++++||.-..-| . +.+..++. .|..++.++|- ....+...+|.|+.+.+|++
T Consensus 321 LR~rPD~IivGEiRd~Et----~---~~~~~l~~-ag~GvigTlHA~sa~~Ai~Rl~~~v~lg~i~~iID~IV~I~~G~I 392 (602)
T PRK13764 321 LLVRPDYTIYDEMRKTED----F---KIFADMRL-AGVGMVGVVHATRPIDAIQRFIGRVELGMIPQIVDTVIFIEDGEV 392 (602)
T ss_pred HhhCCCEEEECCCCCHHH----H---HHHHHHHH-cCCeEEEEECCCCHHHHHHHHHhhhhhchHHHhhcEEEEEeCCEE
Confidence 677899999999985332 2 22222322 25557777762 34456678999999999999
Q ss_pred --EEecCh
Q 002833 423 --VYQGPR 428 (875)
Q Consensus 423 --v~~Gp~ 428 (875)
+|.+..
T Consensus 393 ~~v~~~~~ 400 (602)
T PRK13764 393 SKVYDLEF 400 (602)
T ss_pred EEEEeeee
Confidence 777763
No 493
>PRK15176 Vi polysaccharide export inner membrane protein VexB; Provisional
Probab=97.73 E-value=0.0046 Score=67.24 Aligned_cols=55 Identities=7% Similarity=-0.001 Sum_probs=42.0
Q ss_pred HHHhhcCCcHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhhCHHHHHHHHHH
Q 002833 674 RLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLL 731 (875)
Q Consensus 674 ~~iaa~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~w~~W~~~isP~~Ya~~al~ 731 (875)
-.++...||... +-++++.+++..+|-+-+.+.+|++++|+.+.||+.+..|+.=
T Consensus 170 s~l~v~~rDi~~---i~~~~l~~lf~~SpI~y~~~~vp~~~~~il~~NPl~~~ie~~R 224 (264)
T PRK15176 170 DALSERFPLVYK---AVPVMLRPMFLISAVFYTANELPYSLLSIFSWNPLLHANEIVR 224 (264)
T ss_pred HHHHHhCccHHH---HHHHHHHHHHHHhhHhhhHHhCcHHHHHHHHHCcHHHHHHHHH
Confidence 344555666544 3446667777788988888999999999999999999998753
No 494
>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.73 E-value=0.0093 Score=64.76 Aligned_cols=202 Identities=17% Similarity=0.168 Sum_probs=112.5
Q ss_pred cHHHHHHHHHHHHHHHHhhchhH-HHHHHHHHHHHHHHHHhhhccccCCCCCcccchhHHHHHHHHHHHHHH--HHHHHH
Q 002833 519 SKWELFRACFAREWLLMKRNSFV-YIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMF--NGFAEN 595 (875)
Q Consensus 519 s~~~q~~~~~~R~~~~~~Rd~~~-~~~r~~~~ii~ali~gt~F~~~~~~~~~~~~~~~~~g~lFf~~~~~~~--~~~~el 595 (875)
..++.+.++.+|+.+...|++.+ +..-++.-+++.++.+.+|-..-..+ +-++.-.++.+++...| .+..+.
T Consensus 15 ~~~~li~~L~~~eik~Ryr~s~LG~~W~~l~P~~~~~~~~~vf~~l~~~~-----~~~~~~~l~~G~~~w~f~~~~i~~~ 89 (263)
T COG1682 15 KYRRLIGALVKREIKTRYRRSVLGYLWSLLNPLLMILVYTLVFGALLRSP-----GLNFLAYLLAGLILWFFFSEAISEG 89 (263)
T ss_pred HHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhCC-----CcchHHHHHHHHHHHHHHHHHHHhH
Confidence 45778889999999888877643 33344444444444444443321111 11222233333322222 122333
Q ss_pred HHHhhhhhHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCcchHHHHHHHHHHHHHHHhHHHHHHH
Q 002833 596 AMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRL 675 (875)
Q Consensus 596 ~~~~~~rpvf~kqr~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Y~m~Gl~~~~~~Ff~f~l~l~l~~~~~~~lf~~ 675 (875)
...+.+..=..|+.. .|+..+.++.++.++--.++..++....+=+.-+.. ..........+++..+.+.+++.+
T Consensus 90 ~~s~~~n~~li~k~~---~p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~~~--s~~~l~~~~~l~~l~l~~~g~~l~ 164 (263)
T COG1682 90 AGSVVANAALIKKIN---FPPLILPVARTLSRLFNFLIHLIIILIFLIILGVEP--SWHWLLLLPALLLLILFSVGLGLI 164 (263)
T ss_pred HHHhhhhHHHHhCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333222 478888888888887655555544433333333333 233333334444444555555555
Q ss_pred HhhcCCcHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhhCHHHHHHHHH
Q 002833 676 VAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSL 730 (875)
Q Consensus 676 iaa~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~w~~W~~~isP~~Ya~~al 730 (875)
+|+++--..--..+-+.++-+++..+|-+-+.+.+|.-++|+..+||+.+-.|.+
T Consensus 165 ~a~l~v~fRD~~~i~~~v~~~~f~~sPIi~~~~~~p~~~~~~~~~NP~~~iie~~ 219 (263)
T COG1682 165 LASLGVRFRDLGQILGVVLQLLFFLSPIIYPVSNLPEQLRELVLLNPLTHIIESF 219 (263)
T ss_pred HHhHhhhcccHHHHHHHHHHHHHHhCceeeehhhccHHHHHHHHHCcHHHHHHHH
Confidence 5554433322233445666677778999999999999999999999999988875
No 495
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.72 E-value=2.5e-05 Score=86.87 Aligned_cols=72 Identities=19% Similarity=0.177 Sum_probs=55.7
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCC---------ccCceEEEEecCCCCCCCCCHHHH
Q 002833 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF---------VPQRTCAYISQHDLHHGEMTVRET 265 (875)
Q Consensus 195 ~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~---------~~~~~~~yv~Q~d~~~~~lTV~Et 265 (875)
++|++++++|||||||||++..||+.+.+. .|+|.+.+.+.... ..++.+.+++|.....|..++.++
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~---g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~ 188 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQ---GKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDA 188 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHH
Confidence 579999999999999999999999998764 67999887765221 123457888887666666677888
Q ss_pred HHHh
Q 002833 266 LDFS 269 (875)
Q Consensus 266 L~f~ 269 (875)
+..+
T Consensus 189 l~~~ 192 (318)
T PRK10416 189 IQAA 192 (318)
T ss_pred HHHH
Confidence 7654
No 496
>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A.
Probab=97.71 E-value=7.6e-06 Score=89.72 Aligned_cols=112 Identities=17% Similarity=0.325 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhheeeeeccC---CCcchHHHHHHHHHHHHHHHhHHHHHHHHhhcCCcHHHHHHHH
Q 002833 614 YPSWAFALPIWLLRIPISILDSTIWVALTYYTIG---YDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLG 690 (875)
Q Consensus 614 Y~~~ay~la~~l~~iP~~~~~~~if~~i~Y~m~G---l~~~~~~Ff~f~l~l~l~~~~~~~lf~~iaa~~~~~~~A~~~~ 690 (875)
-+++.|.+++++..+.+.++.++++.++ +.| +... .++..++++++..++..+++.++++++++...|+.++
T Consensus 199 ~~~~~~~~~~~l~~~~~~~i~~~i~~~i---~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~is~~~~~~~~~~~~~ 273 (344)
T PF12698_consen 199 VSPWSYWLSKFLAYFLVSLIQSLIIIII---IFGISGIPFG--NFLLLLLLLLLFSLAFISFGFLISSFFKNSSTAISVA 273 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHhhHHHHHHHHHHHH---HhccccCccc--chHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4778999999999999999988877764 334 4443 5566667788888889999999999999999999888
Q ss_pred HHHHHHHHHhcccccCCCCccchhhhhhhhCHHHHHHHHH
Q 002833 691 TFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSL 730 (875)
Q Consensus 691 ~~~~~~~~lf~Gf~i~~~~ip~w~~W~~~isP~~Ya~~al 730 (875)
+++.++++.++|.+.+.+++|.|++|+.++.|..|..+++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~P~~~~~~~~ 313 (344)
T PF12698_consen 274 SIIILLLSFLSGGFFPLSSLPSFLQWISSFLPFYWFIQGL 313 (344)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHHHHHHHHHhHHhhHHHHHHHHHHhhHHHHHHHH
Confidence 8888866677777788999999999999999999977775
No 497
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=97.70 E-value=0.00062 Score=77.40 Aligned_cols=94 Identities=20% Similarity=0.239 Sum_probs=69.7
Q ss_pred CCCccccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCC-----CHHHHHHH----------HHHHHHHHH
Q 002833 326 GLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGL-----DSSTTFQI----------CKFLKQMVH 390 (875)
Q Consensus 326 gL~~~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGL-----Ds~t~~~i----------~~~L~~l~~ 390 (875)
+|....||. +--...=||-.-|=..|.|||-..+++||+||=|++- |.....-+ ++.++++.+
T Consensus 308 ~LP~g~dT~--~FsT~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~ 385 (448)
T PF09818_consen 308 NLPGGKDTT--CFSTENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYE 385 (448)
T ss_pred hCCCCCCCC--cccccCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHH
Confidence 445555544 1112347999999999999999999999999999864 44444333 566777777
Q ss_pred hCCcEEEEeecCCchhHHhhcCeEEEEeCCeE
Q 002833 391 ILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (875)
Q Consensus 391 ~~~~tviisi~q~~~ei~~lfD~vilL~~G~i 422 (875)
+.|.++|+.. --+...++.+|+||+|++=+.
T Consensus 386 ~~GvStIlV~-Ggsgdy~~vAD~Vi~Md~Y~~ 416 (448)
T PF09818_consen 386 KLGVSTILVV-GGSGDYFDVADRVIMMDEYRP 416 (448)
T ss_pred HcCceEEEEe-ccchhhHhhCCEEEEecCccc
Confidence 7888888876 556788999999999987543
No 498
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.70 E-value=9.7e-05 Score=83.90 Aligned_cols=62 Identities=13% Similarity=0.162 Sum_probs=42.0
Q ss_pred cCCcEEEEeCCCC----CCCH-----HHHHHHHHHHHHHHHhCCcEEEEeecCCc-------hhHHhhcCeEEEEeCC
Q 002833 359 GTANVLYMDEIST----GLDS-----STTFQICKFLKQMVHILDVTMIVALLQPA-------PETYDLFDDIILLSEG 420 (875)
Q Consensus 359 ~~p~iLlLDEPTs----GLDs-----~t~~~i~~~L~~l~~~~~~tviisi~q~~-------~ei~~lfD~vilL~~G 420 (875)
.+|+++++|+..+ .+|+ ....+++..|.++++..+.|++++-|-.. ..+..++|-|+.+..+
T Consensus 157 ~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghvtk~g~~aG~~~leh~vD~Vi~le~~ 234 (372)
T cd01121 157 LKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGD 234 (372)
T ss_pred cCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCcccCcccchhhceEEEEEEcC
Confidence 4799999999754 3331 33455667788888888888888744211 1256788999988643
No 499
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.69 E-value=4.3e-05 Score=78.38 Aligned_cols=38 Identities=24% Similarity=0.501 Sum_probs=31.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCC
Q 002833 197 SRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE 240 (875)
Q Consensus 197 Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~ 240 (875)
|++++|+||||||||||+++|++.+.+ .+.+++..+..
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~------~~~~~~~~~~~ 39 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT------QLLVAHRYITR 39 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC------eEEEcCEECCC
Confidence 789999999999999999999998654 46677765543
No 500
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=97.68 E-value=5.7e-05 Score=98.77 Aligned_cols=58 Identities=16% Similarity=0.301 Sum_probs=49.2
Q ss_pred CCCCCHHHHHHHH----HHHH--------HhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeec
Q 002833 340 RRGISGGQKKRVT----TGEM--------LVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL 401 (875)
Q Consensus 340 ~rgLSGGerkRVs----IA~a--------Lv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~ 401 (875)
..+||||||||+. +|.+ +..+|++++||||++|||+.+...+++.+.++ +.++|++.+
T Consensus 1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l----~~~~i~~s~ 1314 (1353)
T TIGR02680 1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL----DLDFVMTSE 1314 (1353)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh----CCCEEEEcc
Confidence 4679999999996 4644 55899999999999999999999999999886 567777653
Done!