Query 002833
Match_columns 875
No_of_seqs 694 out of 3739
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 03:25:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002833.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002833hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fvq_A Fe(3+) IONS import ATP- 100.0 3E-44 1E-48 399.3 22.9 207 183-432 16-227 (359)
2 3tui_C Methionine import ATP-b 100.0 3.1E-44 1E-48 399.5 22.8 222 183-455 40-267 (366)
3 3rlf_A Maltose/maltodextrin im 100.0 4E-44 1.4E-48 400.9 21.9 207 183-432 15-222 (381)
4 1z47_A CYSA, putative ABC-tran 100.0 1.7E-43 5.7E-48 393.4 23.0 207 183-432 27-234 (355)
5 2yyz_A Sugar ABC transporter, 100.0 2.3E-43 7.8E-48 393.2 22.3 207 183-432 15-222 (359)
6 3gfo_A Cobalt import ATP-bindi 100.0 2.9E-43 1E-47 379.7 22.3 208 183-433 20-233 (275)
7 2it1_A 362AA long hypothetical 100.0 2.8E-43 9.7E-48 392.8 21.4 207 183-432 15-222 (362)
8 3tif_A Uncharacterized ABC tra 100.0 3.6E-43 1.2E-47 371.1 20.6 207 184-431 18-232 (235)
9 1g29_1 MALK, maltose transport 100.0 4.6E-43 1.6E-47 393.0 21.5 207 183-432 15-228 (372)
10 3d31_A Sulfate/molybdate ABC t 100.0 5.5E-43 1.9E-47 388.8 21.7 214 186-453 15-229 (348)
11 2pcj_A ABC transporter, lipopr 100.0 8.8E-43 3E-47 365.6 22.1 200 184-428 17-223 (224)
12 4g1u_C Hemin import ATP-bindin 100.0 1.3E-42 4.6E-47 373.1 23.4 205 183-432 23-236 (266)
13 2olj_A Amino acid ABC transpor 100.0 1.7E-42 5.9E-47 371.5 23.6 205 184-432 37-247 (263)
14 1v43_A Sugar-binding transport 100.0 4.6E-43 1.6E-47 392.4 19.7 207 183-432 23-230 (372)
15 1oxx_K GLCV, glucose, ABC tran 100.0 4.7E-43 1.6E-47 390.5 19.5 206 184-432 16-229 (353)
16 1b0u_A Histidine permease; ABC 100.0 1E-42 3.4E-47 373.5 21.2 205 184-432 19-241 (262)
17 1g6h_A High-affinity branched- 100.0 2E-42 6.7E-47 370.3 21.6 214 184-430 20-239 (257)
18 1vpl_A ABC transporter, ATP-bi 100.0 3.1E-42 1E-46 368.3 22.0 207 183-433 27-235 (256)
19 1ji0_A ABC transporter; ATP bi 100.0 5.5E-42 1.9E-46 363.2 21.8 204 184-432 19-227 (240)
20 2onk_A Molybdate/tungstate ABC 100.0 5.2E-42 1.8E-46 363.2 19.9 201 186-432 14-215 (240)
21 3nh6_A ATP-binding cassette SU 100.0 3.7E-41 1.2E-45 368.2 23.7 208 184-433 67-277 (306)
22 2yz2_A Putative ABC transporte 100.0 2.6E-41 9E-46 363.3 21.6 205 184-433 20-227 (266)
23 2ihy_A ABC transporter, ATP-bi 100.0 1.4E-40 4.9E-45 359.7 18.0 208 184-431 34-250 (279)
24 2ff7_A Alpha-hemolysin translo 100.0 4.7E-40 1.6E-44 349.8 21.5 201 183-432 21-231 (247)
25 1mv5_A LMRA, multidrug resista 100.0 2.5E-40 8.6E-45 351.1 17.9 203 183-432 14-225 (243)
26 2nq2_C Hypothetical ABC transp 100.0 1.2E-39 4.1E-44 347.8 23.0 197 184-431 18-215 (253)
27 2qi9_C Vitamin B12 import ATP- 100.0 6.7E-40 2.3E-44 348.8 20.6 197 185-431 14-220 (249)
28 2d2e_A SUFC protein; ABC-ATPas 100.0 3.5E-40 1.2E-44 351.4 18.0 206 184-430 16-230 (250)
29 2ixe_A Antigen peptide transpo 100.0 7.2E-40 2.5E-44 352.9 20.6 208 184-432 32-244 (271)
30 2zu0_C Probable ATP-dependent 100.0 2E-39 6.9E-44 348.7 20.7 222 183-441 32-261 (267)
31 2pjz_A Hypothetical protein ST 100.0 5E-39 1.7E-43 344.6 19.9 194 184-432 18-214 (263)
32 2ghi_A Transport protein; mult 100.0 1.1E-38 3.9E-43 341.7 21.4 199 184-432 33-241 (260)
33 3gd7_A Fusion complex of cysti 100.0 1.2E-39 4.2E-44 366.9 13.0 200 183-432 33-241 (390)
34 4a82_A Cystic fibrosis transme 100.0 4.1E-38 1.4E-42 373.4 26.0 209 183-433 353-564 (578)
35 1sgw_A Putative ABC transporte 100.0 4.2E-39 1.5E-43 335.1 14.8 188 185-422 23-210 (214)
36 3qf4_A ABC transporter, ATP-bi 100.0 7E-38 2.4E-42 371.9 24.8 209 183-433 355-566 (587)
37 2pze_A Cystic fibrosis transme 100.0 7E-38 2.4E-42 329.4 20.5 197 183-432 20-217 (229)
38 3b60_A Lipid A export ATP-bind 100.0 2.2E-37 7.6E-42 367.5 26.6 209 184-433 356-567 (582)
39 3b5x_A Lipid A export ATP-bind 100.0 5E-37 1.7E-41 364.4 28.8 201 184-432 356-566 (582)
40 2yl4_A ATP-binding cassette SU 100.0 4.6E-37 1.6E-41 365.7 27.7 203 184-432 357-569 (595)
41 2cbz_A Multidrug resistance-as 100.0 7.7E-38 2.6E-42 330.7 18.3 195 184-432 18-216 (237)
42 3qf4_B Uncharacterized ABC tra 100.0 1.8E-37 6.1E-42 369.2 23.6 209 183-433 367-578 (598)
43 4f4c_A Multidrug resistance pr 100.0 4E-37 1.4E-41 394.4 22.5 211 183-433 1091-1304(1321)
44 4f4c_A Multidrug resistance pr 100.0 1.1E-36 3.7E-41 390.4 25.5 209 183-433 430-641 (1321)
45 2bbs_A Cystic fibrosis transme 100.0 8.5E-36 2.9E-40 323.8 18.2 195 184-432 51-246 (290)
46 3g5u_A MCG1178, multidrug resi 100.0 1.2E-34 4.2E-39 370.6 24.5 208 184-433 403-613 (1284)
47 3g5u_A MCG1178, multidrug resi 100.0 8.7E-34 3E-38 362.7 24.2 210 184-433 1046-1258(1284)
48 3bk7_A ABC transporter ATP-bin 100.0 2.3E-32 8E-37 324.3 20.2 191 186-433 371-563 (607)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 2.8E-32 9.6E-37 320.2 18.2 191 186-433 301-493 (538)
50 3ozx_A RNAse L inhibitor; ATP 100.0 1.2E-31 4.1E-36 314.3 20.2 192 186-432 283-476 (538)
51 3j16_B RLI1P; ribosome recycli 100.0 1.8E-31 6.1E-36 316.4 20.1 193 184-433 360-559 (608)
52 3ux8_A Excinuclease ABC, A sub 100.0 2.1E-30 7.2E-35 312.5 16.6 215 183-432 30-297 (670)
53 3bk7_A ABC transporter ATP-bin 100.0 1.5E-30 5.1E-35 308.8 12.8 183 185-421 106-305 (607)
54 1yqt_A RNAse L inhibitor; ATP- 100.0 1.5E-30 5.2E-35 305.5 12.6 182 185-420 36-234 (538)
55 2iw3_A Elongation factor 3A; a 100.0 3.5E-29 1.2E-33 307.1 20.6 186 183-433 447-635 (986)
56 3ux8_A Excinuclease ABC, A sub 100.0 4.6E-29 1.6E-33 300.8 19.4 106 319-432 524-639 (670)
57 2iw3_A Elongation factor 3A; a 100.0 1.5E-29 5E-34 310.4 12.0 232 170-427 671-981 (986)
58 3ozx_A RNAse L inhibitor; ATP 99.9 1.7E-28 5.8E-33 287.6 10.4 176 194-423 22-216 (538)
59 3j16_B RLI1P; ribosome recycli 99.9 5E-28 1.7E-32 286.9 10.9 194 179-424 86-301 (608)
60 3pih_A Uvrabc system protein A 99.9 1.2E-25 4E-30 275.8 24.6 108 317-432 784-901 (916)
61 2r6f_A Excinuclease ABC subuni 99.9 1.9E-26 6.4E-31 280.9 16.8 106 319-432 826-941 (972)
62 2vf7_A UVRA2, excinuclease ABC 99.9 5E-26 1.7E-30 276.9 17.0 108 317-432 709-826 (842)
63 2npi_A Protein CLP1; CLP1-PCF1 99.9 1E-28 3.5E-33 284.2 -6.3 184 188-431 129-336 (460)
64 2ygr_A Uvrabc system protein A 99.9 7.6E-26 2.6E-30 276.5 18.5 108 318-433 843-960 (993)
65 4aby_A DNA repair protein RECN 99.9 9E-25 3.1E-29 248.1 17.9 237 183-426 47-381 (415)
66 3b85_A Phosphate starvation-in 99.9 1.5E-24 5E-29 224.6 -5.1 150 179-403 8-158 (208)
67 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 1.2E-21 4E-26 219.7 17.8 83 339-424 276-364 (365)
68 1tq4_A IIGP1, interferon-induc 99.9 3.6E-24 1.2E-28 242.6 -6.5 172 184-415 36-248 (413)
69 1e69_A Chromosome segregation 99.9 6.9E-22 2.4E-26 217.7 11.7 87 340-430 217-310 (322)
70 2v9p_A Replication protein E1; 99.8 2.3E-24 7.9E-29 234.9 -12.2 169 171-438 102-271 (305)
71 1ye8_A Protein THEP1, hypothet 99.8 3.9E-22 1.3E-26 201.4 3.8 144 199-424 2-159 (178)
72 4gp7_A Metallophosphoesterase; 99.8 5.6E-22 1.9E-26 198.6 4.6 60 343-403 84-159 (171)
73 3b9q_A Chloroplast SRP recepto 99.8 8.3E-22 2.8E-26 215.2 -0.2 175 187-422 90-284 (302)
74 3sop_A Neuronal-specific septi 99.8 1.8E-21 6E-26 209.4 -2.1 146 199-402 4-149 (270)
75 2dpy_A FLII, flagellum-specifi 99.8 2.4E-21 8.1E-26 221.7 -4.7 191 171-431 132-342 (438)
76 2og2_A Putative signal recogni 99.8 1.3E-20 4.4E-25 210.0 0.9 174 188-422 148-341 (359)
77 1znw_A Guanylate kinase, GMP k 99.8 1E-22 3.5E-27 209.8 -15.4 185 183-418 8-202 (207)
78 1z6g_A Guanylate kinase; struc 99.8 8.5E-23 2.9E-27 212.6 -17.2 171 184-419 10-193 (218)
79 2o5v_A DNA replication and rep 99.8 2.8E-18 9.5E-23 191.4 16.6 86 337-431 259-354 (359)
80 3aez_A Pantothenate kinase; tr 99.7 2.6E-20 8.8E-25 204.3 -3.9 128 189-375 81-209 (312)
81 1cr0_A DNA primase/helicase; R 99.7 3.4E-19 1.1E-23 193.4 4.0 187 183-422 21-237 (296)
82 2pt7_A CAG-ALFA; ATPase, prote 99.7 4.3E-19 1.5E-23 196.2 1.6 134 185-422 159-292 (330)
83 2jeo_A Uridine-cytidine kinase 99.7 4.4E-19 1.5E-23 187.5 1.7 155 182-402 10-164 (245)
84 3qkt_A DNA double-strand break 99.7 9.7E-17 3.3E-21 177.9 18.7 77 339-418 245-327 (339)
85 4ad8_A DNA repair protein RECN 99.7 1.7E-17 5.7E-22 194.2 12.3 77 340-420 394-473 (517)
86 3pih_A Uvrabc system protein A 99.7 2.2E-17 7.5E-22 202.7 12.0 169 212-433 383-560 (916)
87 1tf7_A KAIC; homohexamer, hexa 99.7 3.3E-17 1.1E-21 192.1 11.2 156 191-421 275-444 (525)
88 2obl_A ESCN; ATPase, hydrolase 99.7 2.4E-18 8.1E-23 191.3 -0.2 192 171-431 46-253 (347)
89 3thx_A DNA mismatch repair pro 99.7 5.8E-17 2E-21 199.8 10.0 89 341-431 720-811 (934)
90 4a74_A DNA repair and recombin 99.6 1.8E-17 6E-22 171.7 2.1 155 192-421 20-201 (231)
91 1tf7_A KAIC; homohexamer, hexa 99.6 1.1E-18 3.8E-23 204.5 -8.5 172 181-421 22-211 (525)
92 2r6f_A Excinuclease ABC subuni 99.6 4.4E-16 1.5E-20 190.2 13.6 104 321-432 487-599 (972)
93 2o8b_B DNA mismatch repair pro 99.6 2.3E-17 7.7E-22 205.7 0.2 160 183-429 768-938 (1022)
94 3asz_A Uridine kinase; cytidin 99.6 3.1E-18 1.1E-22 176.0 -6.5 145 194-402 3-160 (211)
95 2vf7_A UVRA2, excinuclease ABC 99.6 6.6E-16 2.3E-20 188.2 11.3 107 317-432 359-474 (842)
96 2eyu_A Twitching motility prot 99.6 9.6E-17 3.3E-21 171.6 3.2 133 185-419 15-147 (261)
97 2ehv_A Hypothetical protein PH 99.6 5E-17 1.7E-21 170.4 0.2 169 186-418 18-206 (251)
98 1rj9_A FTSY, signal recognitio 99.6 7.3E-17 2.5E-21 176.2 -0.8 149 196-403 101-258 (304)
99 1w1w_A Structural maintenance 99.6 7.3E-15 2.5E-19 167.9 15.6 75 341-418 332-410 (430)
100 2qnr_A Septin-2, protein NEDD5 99.6 4.7E-17 1.6E-21 177.6 -3.0 157 182-403 9-167 (301)
101 2ygr_A Uvrabc system protein A 99.6 5E-15 1.7E-19 181.5 14.5 105 321-433 504-617 (993)
102 3thx_B DNA mismatch repair pro 99.6 6.3E-16 2.1E-20 190.1 6.4 146 183-414 659-805 (918)
103 1pzn_A RAD51, DNA repair and r 99.6 1.1E-16 3.8E-21 178.2 -0.7 169 185-428 118-310 (349)
104 1f2t_B RAD50 ABC-ATPase; DNA d 99.6 4.2E-15 1.4E-19 145.4 10.6 82 338-422 53-142 (148)
105 1ewq_A DNA mismatch repair pro 99.6 4.1E-16 1.4E-20 189.1 3.2 132 184-411 566-704 (765)
106 2w0m_A SSO2452; RECA, SSPF, un 99.6 5.7E-15 2E-19 152.5 11.3 172 184-420 9-192 (235)
107 2i3b_A HCR-ntpase, human cance 99.6 4.1E-17 1.4E-21 166.3 -5.5 158 197-426 1-169 (189)
108 1nlf_A Regulatory protein REPA 99.5 7.4E-15 2.5E-19 158.0 9.0 151 193-403 26-181 (279)
109 3szr_A Interferon-induced GTP- 99.5 8.7E-17 3E-21 191.4 -8.3 167 200-435 48-239 (608)
110 1wb9_A DNA mismatch repair pro 99.5 2.5E-15 8.5E-20 183.2 4.2 157 184-427 595-752 (800)
111 2cvh_A DNA repair and recombin 99.4 3.9E-13 1.3E-17 138.0 10.3 78 343-420 85-185 (220)
112 2qag_C Septin-7; cell cycle, c 99.4 2.8E-14 9.7E-19 162.0 1.4 162 170-402 11-176 (418)
113 1s96_A Guanylate kinase, GMP k 99.4 1.6E-14 5.5E-19 150.5 -0.8 150 191-436 10-163 (219)
114 1zp6_A Hypothetical protein AT 99.4 2E-15 6.8E-20 152.2 -7.5 139 194-388 6-147 (191)
115 3jvv_A Twitching mobility prot 99.4 5.1E-14 1.7E-18 156.9 3.2 133 186-420 114-246 (356)
116 1lw7_A Transcriptional regulat 99.4 1.7E-16 5.9E-21 177.6 -17.8 163 186-417 157-341 (365)
117 2bdt_A BH3686; alpha-beta prot 99.4 4.4E-16 1.5E-20 157.3 -14.3 170 197-431 2-182 (189)
118 3kta_B Chromosome segregation 99.4 3.1E-12 1.1E-16 128.3 13.8 89 340-432 62-157 (173)
119 1pui_A ENGB, probable GTP-bind 99.4 9.2E-15 3.2E-19 149.1 -4.7 66 320-390 131-198 (210)
120 1htw_A HI0065; nucleotide-bind 99.3 3.1E-14 1.1E-18 140.8 -2.6 78 184-268 20-97 (158)
121 2gza_A Type IV secretion syste 99.3 2.8E-13 9.4E-18 151.5 4.6 136 186-421 164-303 (361)
122 2bbw_A Adenylate kinase 4, AK4 99.3 1.3E-14 4.6E-19 153.0 -6.9 160 196-391 26-199 (246)
123 2qag_B Septin-6, protein NEDD5 99.3 3E-13 1E-17 153.3 2.1 172 183-399 27-215 (427)
124 1n0w_A DNA repair protein RAD5 99.3 1.6E-12 5.5E-17 135.5 5.9 61 359-420 118-209 (243)
125 2ewv_A Twitching motility prot 99.3 6.3E-13 2.2E-17 149.1 2.5 132 185-418 126-257 (372)
126 2yhs_A FTSY, cell division pro 99.3 1.9E-13 6.6E-18 156.8 -2.1 81 187-270 283-372 (503)
127 1nij_A Hypothetical protein YJ 99.3 9.7E-15 3.3E-19 160.4 -13.1 156 198-404 5-190 (318)
128 2f1r_A Molybdopterin-guanine d 99.2 5.9E-14 2E-18 140.6 -7.9 138 198-390 3-161 (171)
129 2rcn_A Probable GTPase ENGC; Y 99.2 1.8E-12 6.3E-17 144.0 2.7 122 186-357 205-328 (358)
130 3e70_C DPA, signal recognition 99.2 2.7E-12 9.1E-17 141.5 3.5 164 194-422 126-306 (328)
131 1odf_A YGR205W, hypothetical 3 99.2 1.3E-12 4.4E-17 141.7 0.1 134 195-377 29-169 (290)
132 1udx_A The GTP-binding protein 99.2 8.7E-13 3E-17 149.7 -2.1 170 187-414 147-319 (416)
133 2qm8_A GTPase/ATPase; G protei 99.2 2E-13 6.7E-18 151.3 -7.4 181 184-390 42-260 (337)
134 3ec2_A DNA replication protein 99.2 3.7E-12 1.3E-16 127.4 0.9 48 358-406 98-146 (180)
135 3auy_A DNA double-strand break 99.1 9.7E-11 3.3E-15 131.2 10.5 97 318-418 245-359 (371)
136 2yv5_A YJEQ protein; hydrolase 99.1 7.9E-12 2.7E-16 136.3 1.6 120 195-355 163-300 (302)
137 1p9r_A General secretion pathw 99.1 1.5E-12 5.2E-17 147.9 -6.7 139 183-366 155-315 (418)
138 2oap_1 GSPE-2, type II secreti 99.1 8.3E-13 2.8E-17 153.8 -9.8 85 184-271 247-331 (511)
139 3lda_A DNA repair protein RAD5 99.1 5.4E-11 1.9E-15 134.4 5.3 63 359-421 272-364 (400)
140 3c8u_A Fructokinase; YP_612366 99.0 4.4E-12 1.5E-16 130.3 -7.2 30 194-223 19-48 (208)
141 2kjq_A DNAA-related protein; s 99.0 4.8E-10 1.7E-14 109.5 7.7 47 358-406 81-128 (149)
142 1sxj_E Activator 1 40 kDa subu 99.0 3.5E-10 1.2E-14 124.8 7.5 135 200-404 39-175 (354)
143 1in4_A RUVB, holliday junction 99.0 2E-12 6.8E-17 142.8 -10.7 157 183-393 30-197 (334)
144 1u0l_A Probable GTPase ENGC; p 99.0 1E-10 3.4E-15 127.4 1.6 73 193-269 165-259 (301)
145 1ni3_A YCHF GTPase, YCHF GTP-b 99.0 5.4E-13 1.9E-17 150.1 -17.2 168 193-429 16-209 (392)
146 2x8a_A Nuclear valosin-contain 98.9 5.8E-13 2E-17 143.2 -16.8 141 184-384 33-189 (274)
147 1lvg_A Guanylate kinase, GMP k 98.9 2.4E-13 8.2E-18 139.0 -20.2 57 353-419 116-173 (198)
148 1t9h_A YLOQ, probable GTPase E 98.8 6.4E-10 2.2E-14 121.2 1.1 71 193-267 169-248 (307)
149 2dr3_A UPF0273 protein PH0284; 98.8 1.7E-08 5.7E-13 105.0 11.7 61 359-419 127-196 (247)
150 1sq5_A Pantothenate kinase; P- 98.8 3.5E-10 1.2E-14 123.5 -2.2 74 195-273 78-156 (308)
151 2r6a_A DNAB helicase, replicat 98.8 2.8E-08 9.5E-13 114.2 12.9 184 183-422 189-401 (454)
152 1vma_A Cell division protein F 98.8 4.6E-09 1.6E-13 114.6 6.0 114 190-390 97-213 (306)
153 3euj_A Chromosome partition pr 98.7 2.1E-09 7.3E-14 123.7 2.5 53 184-240 17-69 (483)
154 3k1j_A LON protease, ATP-depen 98.7 8.6E-10 2.9E-14 131.3 -3.0 160 183-387 46-227 (604)
155 3tr0_A Guanylate kinase, GMP k 98.6 1.6E-09 5.3E-14 110.0 -2.1 71 191-268 1-74 (205)
156 2px0_A Flagellar biosynthesis 98.6 3.7E-08 1.3E-12 106.9 8.6 143 195-425 103-247 (296)
157 1ls1_A Signal recognition part 98.6 9.1E-08 3.1E-12 103.8 10.4 118 188-388 91-209 (295)
158 2ius_A DNA translocase FTSK; n 98.6 5.6E-09 1.9E-13 121.0 -0.0 166 189-405 159-344 (512)
159 2zr9_A Protein RECA, recombina 98.5 9E-08 3.1E-12 106.3 7.4 78 350-427 127-237 (349)
160 1oix_A RAS-related protein RAB 98.5 1.7E-08 5.9E-13 101.6 0.5 38 349-388 152-189 (191)
161 1iy2_A ATP-dependent metallopr 98.5 2.3E-10 7.9E-15 122.7 -15.2 78 184-268 62-143 (278)
162 1ixz_A ATP-dependent metallopr 98.5 2.3E-10 7.9E-15 120.7 -15.1 77 184-267 38-118 (254)
163 3lnc_A Guanylate kinase, GMP k 98.4 5.1E-08 1.7E-12 101.4 1.9 40 184-223 14-54 (231)
164 3hr8_A Protein RECA; alpha and 98.4 1.1E-07 3.7E-12 105.7 4.6 32 192-223 56-87 (356)
165 1qhl_A Protein (cell division 98.3 1.5E-08 5.1E-13 105.8 -4.4 59 191-253 22-91 (227)
166 4eun_A Thermoresistant glucoki 98.3 3.5E-08 1.2E-12 100.4 -3.9 71 191-268 23-95 (200)
167 2ce7_A Cell division protein F 98.2 2.4E-06 8.1E-11 98.5 8.8 59 345-403 93-164 (476)
168 4a1f_A DNAB helicase, replicat 98.2 3.9E-06 1.3E-10 92.5 9.4 131 182-399 31-162 (338)
169 2f9l_A RAB11B, member RAS onco 98.1 1.1E-06 3.9E-11 88.5 4.2 37 351-389 130-166 (199)
170 3kta_A Chromosome segregation 98.1 1.3E-06 4.4E-11 86.9 4.5 38 186-224 14-53 (182)
171 2qtf_A Protein HFLX, GTP-bindi 98.1 1.2E-06 4.2E-11 97.7 4.5 158 196-390 177-353 (364)
172 2j41_A Guanylate kinase; GMP, 98.1 1.2E-06 4E-11 88.6 2.7 32 193-224 2-33 (207)
173 1zu4_A FTSY; GTPase, signal re 98.0 8E-07 2.7E-11 97.5 0.6 81 186-269 94-187 (320)
174 3nwj_A ATSK2; P loop, shikimat 98.0 5E-07 1.7E-11 95.7 -1.9 52 171-222 18-73 (250)
175 3a00_A Guanylate kinase, GMP k 98.0 1.5E-06 5.1E-11 87.2 1.4 27 197-223 1-27 (186)
176 4e22_A Cytidylate kinase; P-lo 97.9 7.5E-07 2.6E-11 94.1 -1.6 63 186-254 19-96 (252)
177 3vaa_A Shikimate kinase, SK; s 97.9 3E-06 1E-10 85.9 2.8 39 183-221 11-49 (199)
178 3uie_A Adenylyl-sulfate kinase 97.9 8.5E-07 2.9E-11 90.0 -2.0 53 183-239 11-65 (200)
179 2xau_A PRE-mRNA-splicing facto 97.8 1.4E-05 4.6E-10 97.7 6.8 79 342-421 190-270 (773)
180 1kgd_A CASK, peripheral plasma 97.8 4.7E-06 1.6E-10 83.2 2.2 38 195-234 3-40 (180)
181 2dhr_A FTSH; AAA+ protein, hex 97.8 1.9E-07 6.5E-12 108.3 -9.6 77 184-267 53-133 (499)
182 3bh0_A DNAB-like replicative h 97.7 6.4E-05 2.2E-09 82.0 9.4 130 183-399 54-187 (315)
183 2vp4_A Deoxynucleoside kinase; 97.7 9.4E-06 3.2E-10 84.3 2.5 39 193-238 16-54 (230)
184 1svm_A Large T antigen; AAA+ f 97.7 7.1E-06 2.4E-10 91.9 0.6 44 184-233 156-199 (377)
185 2z4s_A Chromosomal replication 97.7 3.2E-05 1.1E-09 88.3 5.7 96 359-457 193-296 (440)
186 2e87_A Hypothetical protein PH 97.6 8.9E-05 3.1E-09 82.2 8.8 56 342-400 231-287 (357)
187 3b9p_A CG5977-PA, isoform A; A 97.6 0.00024 8.2E-09 76.0 11.6 27 195-221 52-78 (297)
188 3tau_A Guanylate kinase, GMP k 97.6 2.6E-05 9E-10 79.6 3.9 29 195-223 6-34 (208)
189 1knq_A Gluconate kinase; ALFA/ 97.6 1.8E-05 6E-10 78.0 2.4 37 195-238 6-42 (175)
190 1rz3_A Hypothetical protein rb 97.6 1.3E-05 4.3E-10 81.5 1.3 41 194-237 19-59 (201)
191 2qt1_A Nicotinamide riboside k 97.5 4.4E-05 1.5E-09 77.4 4.3 29 193-221 17-45 (207)
192 2z43_A DNA repair and recombin 97.5 0.00044 1.5E-08 75.6 11.9 55 348-403 188-257 (324)
193 3t34_A Dynamin-related protein 97.5 0.00025 8.7E-09 78.5 10.1 44 184-233 24-69 (360)
194 3ney_A 55 kDa erythrocyte memb 97.5 3.7E-05 1.3E-09 78.3 2.6 28 195-222 17-44 (197)
195 1v5w_A DMC1, meiotic recombina 97.5 0.00057 1.9E-08 75.4 12.3 35 186-220 110-145 (343)
196 3tqc_A Pantothenate kinase; bi 97.4 1.2E-05 4.2E-10 88.0 -1.4 58 184-258 73-136 (321)
197 3cr8_A Sulfate adenylyltranfer 97.4 3.1E-05 1.1E-09 90.8 1.1 43 193-238 365-409 (552)
198 2dy1_A Elongation factor G; tr 97.4 1.8E-05 6.2E-10 95.1 -1.0 48 191-240 3-50 (665)
199 1fnn_A CDC6P, cell division co 97.4 0.001 3.4E-08 73.4 13.1 44 359-403 124-169 (389)
200 1kag_A SKI, shikimate kinase I 97.4 5.7E-05 2E-09 74.0 2.7 27 196-222 3-29 (173)
201 1lv7_A FTSH; alpha/beta domain 97.3 0.00069 2.4E-08 71.0 10.1 35 186-222 36-70 (257)
202 1ega_A Protein (GTP-binding pr 97.3 0.00019 6.5E-09 77.7 5.7 45 343-394 101-148 (301)
203 2p67_A LAO/AO transport system 97.3 3.4E-05 1.2E-09 85.1 -0.6 51 184-237 43-93 (341)
204 1f2t_A RAD50 ABC-ATPase; DNA d 97.2 0.00017 5.9E-09 69.9 3.9 31 189-220 16-46 (149)
205 3cf0_A Transitional endoplasmi 97.2 0.00067 2.3E-08 73.2 8.7 29 193-221 45-73 (301)
206 1ypw_A Transitional endoplasmi 97.1 0.00028 9.5E-09 86.6 5.7 32 192-223 233-264 (806)
207 2pez_A Bifunctional 3'-phospho 97.1 0.00013 4.5E-09 72.1 2.0 40 195-238 3-44 (179)
208 2www_A Methylmalonic aciduria 97.1 0.00012 4.1E-09 81.1 1.8 41 195-238 72-112 (349)
209 3kl4_A SRP54, signal recogniti 97.1 0.00098 3.3E-08 75.8 9.3 37 196-235 96-132 (433)
210 1cke_A CK, MSSA, protein (cyti 97.0 5.8E-05 2E-09 77.4 -1.6 37 197-233 5-41 (227)
211 4eaq_A DTMP kinase, thymidylat 97.0 0.00023 7.9E-09 74.0 2.8 38 186-223 12-52 (229)
212 1u94_A RECA protein, recombina 97.0 0.0093 3.2E-07 66.1 16.0 30 192-221 58-87 (356)
213 2gj8_A MNME, tRNA modification 97.0 0.00062 2.1E-08 66.8 5.5 27 195-221 2-28 (172)
214 3m6a_A ATP-dependent protease 97.0 0.00012 4.2E-09 85.8 0.4 48 185-236 97-144 (543)
215 1mky_A Probable GTP-binding pr 96.9 0.00071 2.4E-08 77.1 6.2 71 198-268 181-263 (439)
216 2qby_A CDC6 homolog 1, cell di 96.9 0.00018 6.3E-09 79.0 0.9 29 195-223 43-71 (386)
217 1f6b_A SAR1; gtpases, N-termin 96.9 0.00024 8.2E-09 71.4 1.6 36 184-220 13-48 (198)
218 2i1q_A DNA repair and recombin 96.9 0.0034 1.1E-07 68.2 10.6 28 192-219 93-120 (322)
219 1m2o_B GTP-binding protein SAR 96.9 0.00069 2.4E-08 67.5 4.6 35 185-220 12-46 (190)
220 1m7g_A Adenylylsulfate kinase; 96.9 0.00025 8.5E-09 72.3 1.3 41 194-237 22-64 (211)
221 3llm_A ATP-dependent RNA helic 96.8 0.00026 9E-09 73.4 1.3 67 344-413 162-229 (235)
222 2q6t_A DNAB replication FORK h 96.8 0.0034 1.2E-07 71.6 9.9 131 183-399 186-316 (444)
223 3h4m_A Proteasome-activating n 96.7 0.0022 7.5E-08 67.9 7.7 28 194-221 48-75 (285)
224 1l8q_A Chromosomal replication 96.7 0.0018 6.1E-08 70.3 7.1 46 359-405 97-143 (324)
225 2qor_A Guanylate kinase; phosp 96.7 0.00057 1.9E-08 69.2 2.5 29 194-222 9-37 (204)
226 1y63_A LMAJ004144AAA protein; 96.7 0.00065 2.2E-08 67.7 2.9 32 189-220 2-33 (184)
227 3qks_A DNA double-strand break 96.7 0.00088 3E-08 68.2 3.9 32 189-221 16-47 (203)
228 3ice_A Transcription terminati 96.7 0.00051 1.7E-08 76.5 2.2 50 172-221 135-198 (422)
229 2yvu_A Probable adenylyl-sulfa 96.7 0.00058 2E-08 67.9 2.4 29 195-223 11-39 (186)
230 2b8t_A Thymidine kinase; deoxy 96.7 0.0033 1.1E-07 65.1 8.0 53 360-418 89-150 (223)
231 2qag_A Septin-2, protein NEDD5 96.6 0.00024 8.3E-09 79.0 -0.9 35 183-223 29-63 (361)
232 2zts_A Putative uncharacterize 96.6 0.0072 2.4E-07 62.1 9.9 61 358-418 133-206 (251)
233 1np6_A Molybdopterin-guanine d 96.6 0.00092 3.1E-08 66.6 2.9 40 198-237 7-46 (174)
234 1jjv_A Dephospho-COA kinase; P 96.5 0.0011 3.8E-08 66.9 3.4 69 344-418 61-131 (206)
235 2ffh_A Protein (FFH); SRP54, s 96.5 0.00083 2.8E-08 76.2 2.2 46 188-238 91-136 (425)
236 2ga8_A Hypothetical 39.9 kDa p 96.5 0.0003 1E-08 77.7 -1.4 38 185-222 10-49 (359)
237 2p5t_B PEZT; postsegregational 96.4 0.00082 2.8E-08 70.6 1.6 40 193-237 28-67 (253)
238 2wji_A Ferrous iron transport 96.4 0.0029 9.8E-08 61.2 5.3 23 199-221 5-27 (165)
239 1q57_A DNA primase/helicase; d 96.4 0.033 1.1E-06 64.3 15.2 37 184-220 229-265 (503)
240 2if2_A Dephospho-COA kinase; a 96.4 0.0015 5E-08 65.8 3.1 21 199-219 3-23 (204)
241 3lxx_A GTPase IMAP family memb 96.3 0.012 4.1E-07 60.7 9.9 25 199-223 31-55 (239)
242 2ohf_A Protein OLA1, GTP-bindi 96.3 0.0014 4.9E-08 73.5 2.8 43 191-236 16-69 (396)
243 3cm0_A Adenylate kinase; ATP-b 96.3 0.002 6.7E-08 63.7 3.4 27 195-221 2-28 (186)
244 1sxj_C Activator 1 40 kDa subu 96.3 0.00054 1.9E-08 75.0 -0.8 41 183-223 30-72 (340)
245 1j8m_F SRP54, signal recogniti 96.3 0.00059 2E-08 73.8 -0.6 46 188-237 89-135 (297)
246 1xwi_A SKD1 protein; VPS4B, AA 96.2 0.04 1.4E-06 59.9 14.0 28 194-221 42-69 (322)
247 2wjg_A FEOB, ferrous iron tran 96.2 0.0022 7.5E-08 63.0 3.5 22 199-220 9-30 (188)
248 2qz4_A Paraplegin; AAA+, SPG7, 96.2 0.012 4.1E-07 61.1 9.4 27 195-221 37-63 (262)
249 3t61_A Gluconokinase; PSI-biol 96.2 0.0014 4.7E-08 66.0 2.1 25 197-221 18-42 (202)
250 3d8b_A Fidgetin-like protein 1 96.2 0.018 6E-07 63.6 11.0 27 195-221 115-141 (357)
251 1xp8_A RECA protein, recombina 96.2 0.045 1.5E-06 60.8 14.3 29 192-220 69-97 (366)
252 3kb2_A SPBC2 prophage-derived 96.2 0.0018 6.3E-08 62.7 2.5 24 199-222 3-26 (173)
253 3cmw_A Protein RECA, recombina 96.1 0.0091 3.1E-07 77.8 9.3 30 193-222 728-757 (1706)
254 1qhx_A CPT, protein (chloramph 96.1 0.0024 8.1E-08 62.6 3.0 26 197-222 3-28 (178)
255 3io5_A Recombination and repai 95.9 0.03 1E-06 60.9 10.7 26 192-218 24-49 (333)
256 2rhm_A Putative kinase; P-loop 95.9 0.0034 1.2E-07 62.1 3.1 27 195-221 3-29 (193)
257 1q3t_A Cytidylate kinase; nucl 95.9 0.0029 9.9E-08 65.5 2.6 28 194-221 13-40 (236)
258 1kht_A Adenylate kinase; phosp 95.9 0.004 1.4E-07 61.4 3.5 27 196-222 2-28 (192)
259 3auy_A DNA double-strand break 95.9 0.0038 1.3E-07 69.4 3.5 31 187-218 16-46 (371)
260 4b4t_J 26S protease regulatory 95.8 0.038 1.3E-06 62.0 11.5 28 195-222 180-207 (405)
261 3bgw_A DNAB-like replicative h 95.8 0.023 7.8E-07 64.8 9.8 38 183-220 183-220 (444)
262 3r20_A Cytidylate kinase; stru 95.8 0.0033 1.1E-07 65.6 2.6 24 198-221 10-33 (233)
263 2v54_A DTMP kinase, thymidylat 95.7 0.0051 1.7E-07 61.5 3.6 26 196-221 3-28 (204)
264 2zej_A Dardarin, leucine-rich 95.7 0.0046 1.6E-07 60.9 3.0 23 199-221 4-26 (184)
265 2ze6_A Isopentenyl transferase 95.7 0.0041 1.4E-07 65.4 2.8 25 198-222 2-26 (253)
266 2plr_A DTMP kinase, probable t 95.7 0.0059 2E-07 61.2 3.7 28 196-223 3-30 (213)
267 3lw7_A Adenylate kinase relate 95.7 0.0053 1.8E-07 59.1 3.3 19 199-217 3-21 (179)
268 2jaq_A Deoxyguanosine kinase; 95.7 0.0043 1.5E-07 61.8 2.7 24 199-222 2-25 (205)
269 3trf_A Shikimate kinase, SK; a 95.7 0.0055 1.9E-07 60.4 3.4 26 196-221 4-29 (185)
270 1gvn_B Zeta; postsegregational 95.6 0.0058 2E-07 65.6 3.7 36 195-235 31-66 (287)
271 3cmw_A Protein RECA, recombina 95.6 0.1 3.6E-06 68.1 15.6 36 185-220 369-406 (1706)
272 1ly1_A Polynucleotide kinase; 95.6 0.0063 2.2E-07 59.3 3.5 22 198-219 3-24 (181)
273 3iij_A Coilin-interacting nucl 95.5 0.0055 1.9E-07 60.3 2.9 26 196-221 10-35 (180)
274 1via_A Shikimate kinase; struc 95.5 0.0049 1.7E-07 60.4 2.4 23 199-221 6-28 (175)
275 2wwf_A Thymidilate kinase, put 95.5 0.0068 2.3E-07 61.0 3.5 27 195-221 8-34 (212)
276 4b4t_H 26S protease regulatory 95.5 0.031 1.1E-06 63.7 9.2 29 194-222 240-268 (467)
277 2c95_A Adenylate kinase 1; tra 95.5 0.0064 2.2E-07 60.3 3.2 27 195-221 7-33 (196)
278 1xx6_A Thymidine kinase; NESG, 95.5 0.022 7.4E-07 57.5 7.1 53 360-418 81-142 (191)
279 1vht_A Dephospho-COA kinase; s 95.4 0.0076 2.6E-07 61.2 3.7 24 196-219 3-26 (218)
280 1tev_A UMP-CMP kinase; ploop, 95.4 0.0085 2.9E-07 59.1 3.6 26 196-221 2-27 (196)
281 1nn5_A Similar to deoxythymidy 95.4 0.0077 2.6E-07 60.6 3.4 28 195-222 7-34 (215)
282 3hu3_A Transitional endoplasmi 95.3 0.019 6.4E-07 66.4 6.8 28 194-221 235-262 (489)
283 1aky_A Adenylate kinase; ATP:A 95.3 0.0086 2.9E-07 61.0 3.6 27 195-221 2-28 (220)
284 2bwj_A Adenylate kinase 5; pho 95.3 0.003 1E-07 62.9 0.0 27 195-221 10-36 (199)
285 2j9r_A Thymidine kinase; TK1, 95.3 0.044 1.5E-06 56.2 8.8 53 360-418 101-162 (214)
286 1nks_A Adenylate kinase; therm 95.2 0.0087 3E-07 58.9 3.3 24 199-222 3-26 (194)
287 1uf9_A TT1252 protein; P-loop, 95.1 0.011 3.8E-07 58.9 3.6 23 198-220 9-31 (203)
288 1xjc_A MOBB protein homolog; s 95.1 0.0078 2.7E-07 59.6 2.4 26 198-223 5-30 (169)
289 1gtv_A TMK, thymidylate kinase 95.1 0.0035 1.2E-07 63.2 -0.1 25 199-223 2-26 (214)
290 1ex7_A Guanylate kinase; subst 95.1 0.0085 2.9E-07 60.3 2.8 25 198-222 2-26 (186)
291 3cmu_A Protein RECA, recombina 95.1 0.21 7E-06 66.2 16.0 37 185-221 369-407 (2050)
292 3k53_A Ferrous iron transport 95.0 0.0098 3.3E-07 62.9 3.1 23 199-221 5-27 (271)
293 3ihw_A Centg3; RAS, centaurin, 95.0 0.02 6.9E-07 56.4 5.1 22 199-220 22-43 (184)
294 1jal_A YCHF protein; nucleotid 95.0 0.016 5.6E-07 64.2 4.7 38 198-235 3-48 (363)
295 1zd8_A GTP:AMP phosphotransfer 95.0 0.012 4E-07 60.4 3.3 27 195-221 5-31 (227)
296 2vli_A Antibiotic resistance p 94.9 0.0091 3.1E-07 58.5 2.2 26 196-221 4-29 (183)
297 1z2a_A RAS-related protein RAB 94.9 0.012 4E-07 56.1 2.9 23 199-221 7-29 (168)
298 2cdn_A Adenylate kinase; phosp 94.9 0.014 4.8E-07 58.5 3.6 26 196-221 19-44 (201)
299 4fcw_A Chaperone protein CLPB; 94.9 0.011 3.8E-07 63.1 2.9 28 196-223 46-73 (311)
300 3q72_A GTP-binding protein RAD 94.9 0.011 3.9E-07 56.3 2.7 24 199-222 4-27 (166)
301 2nzj_A GTP-binding protein REM 94.8 0.013 4.6E-07 56.2 3.1 23 199-221 6-28 (175)
302 2erx_A GTP-binding protein DI- 94.8 0.013 4.6E-07 55.8 3.1 22 199-220 5-26 (172)
303 3umf_A Adenylate kinase; rossm 94.8 0.015 5.1E-07 59.9 3.6 27 195-221 27-53 (217)
304 1kao_A RAP2A; GTP-binding prot 94.8 0.013 4.4E-07 55.5 3.0 23 199-221 5-27 (167)
305 2ged_A SR-beta, signal recogni 94.8 0.013 4.3E-07 57.8 3.0 24 198-221 49-72 (193)
306 3ake_A Cytidylate kinase; CMP 94.8 0.012 3.9E-07 59.0 2.6 23 199-221 4-26 (208)
307 1u8z_A RAS-related protein RAL 94.7 0.014 4.7E-07 55.4 2.9 23 199-221 6-28 (168)
308 2ce2_X GTPase HRAS; signaling 94.7 0.013 4.6E-07 55.3 2.8 23 199-221 5-27 (166)
309 2dyk_A GTP-binding protein; GT 94.7 0.014 4.9E-07 55.2 3.0 23 199-221 3-25 (161)
310 2z0h_A DTMP kinase, thymidylat 94.7 0.015 5.3E-07 57.5 3.3 24 199-222 2-25 (197)
311 4ag6_A VIRB4 ATPase, type IV s 94.7 0.011 3.9E-07 65.9 2.5 45 359-404 261-308 (392)
312 3a4m_A L-seryl-tRNA(SEC) kinas 94.7 0.017 5.8E-07 60.8 3.7 27 195-221 2-28 (260)
313 1z0j_A RAB-22, RAS-related pro 94.7 0.015 5.1E-07 55.5 3.0 23 199-221 8-30 (170)
314 3fb4_A Adenylate kinase; psych 94.7 0.016 5.3E-07 58.7 3.3 23 199-221 2-24 (216)
315 3q85_A GTP-binding protein REM 94.7 0.015 5.2E-07 55.5 3.1 22 200-221 5-26 (169)
316 3tw8_B RAS-related protein RAB 94.7 0.014 4.9E-07 56.2 2.9 23 199-221 11-33 (181)
317 1g16_A RAS-related protein SEC 94.6 0.014 4.9E-07 55.6 2.8 23 199-221 5-27 (170)
318 3bos_A Putative DNA replicatio 94.6 0.016 5.5E-07 58.8 3.3 27 196-222 51-77 (242)
319 1z08_A RAS-related protein RAB 94.6 0.016 5.4E-07 55.4 3.0 23 199-221 8-30 (170)
320 1ek0_A Protein (GTP-binding pr 94.6 0.015 5.3E-07 55.3 2.9 23 199-221 5-27 (170)
321 1wms_A RAB-9, RAB9, RAS-relate 94.6 0.016 5.4E-07 55.9 3.0 23 199-221 9-31 (177)
322 1qf9_A UMP/CMP kinase, protein 94.6 0.018 6.2E-07 56.5 3.4 25 197-221 6-30 (194)
323 2pbr_A DTMP kinase, thymidylat 94.6 0.018 6E-07 56.8 3.3 23 199-221 2-24 (195)
324 1ukz_A Uridylate kinase; trans 94.5 0.018 6.3E-07 57.6 3.5 25 197-221 15-39 (203)
325 3dl0_A Adenylate kinase; phosp 94.5 0.017 5.9E-07 58.4 3.3 23 199-221 2-24 (216)
326 1c1y_A RAS-related protein RAP 94.5 0.016 5.6E-07 55.0 2.9 22 199-220 5-26 (167)
327 1zak_A Adenylate kinase; ATP:A 94.5 0.015 5.2E-07 59.3 2.8 26 196-221 4-29 (222)
328 3tlx_A Adenylate kinase 2; str 94.5 0.019 6.6E-07 59.7 3.6 26 196-221 28-53 (243)
329 1zuh_A Shikimate kinase; alpha 94.5 0.019 6.5E-07 55.7 3.3 24 198-221 8-31 (168)
330 2lkc_A Translation initiation 94.5 0.021 7.2E-07 55.1 3.6 25 197-221 8-32 (178)
331 1ky3_A GTP-binding protein YPT 94.5 0.017 5.8E-07 55.7 3.0 23 199-221 10-32 (182)
332 1svi_A GTP-binding protein YSX 94.5 0.016 5.4E-07 57.1 2.7 23 199-221 25-47 (195)
333 2iyv_A Shikimate kinase, SK; t 94.4 0.015 5.3E-07 57.2 2.6 24 198-221 3-26 (184)
334 1e6c_A Shikimate kinase; phosp 94.4 0.016 5.6E-07 56.1 2.8 23 199-221 4-26 (173)
335 2fn4_A P23, RAS-related protei 94.4 0.017 5.9E-07 55.7 2.8 23 199-221 11-33 (181)
336 3clv_A RAB5 protein, putative; 94.4 0.018 6.1E-07 56.5 3.0 23 199-221 9-31 (208)
337 3b1v_A Ferrous iron uptake tra 94.4 0.025 8.6E-07 60.1 4.3 23 199-221 5-27 (272)
338 1r2q_A RAS-related protein RAB 94.4 0.018 6.3E-07 54.7 2.9 22 199-220 8-29 (170)
339 1jbk_A CLPB protein; beta barr 94.4 0.022 7.6E-07 55.2 3.6 27 196-222 42-68 (195)
340 2orv_A Thymidine kinase; TP4A 94.4 0.16 5.5E-06 52.6 10.1 53 359-418 89-150 (234)
341 1fzq_A ADP-ribosylation factor 94.4 0.017 5.8E-07 56.7 2.7 22 199-220 18-39 (181)
342 2pt5_A Shikimate kinase, SK; a 94.3 0.022 7.5E-07 55.0 3.4 23 199-221 2-24 (168)
343 2hxs_A RAB-26, RAS-related pro 94.3 0.021 7.1E-07 55.1 3.2 23 199-221 8-30 (178)
344 4dsu_A GTPase KRAS, isoform 2B 94.3 0.019 6.6E-07 55.8 3.0 23 199-221 6-28 (189)
345 2w58_A DNAI, primosome compone 94.3 0.019 6.4E-07 57.4 3.0 25 198-222 55-79 (202)
346 2cxx_A Probable GTP-binding pr 94.3 0.018 6.3E-07 56.1 2.7 22 200-221 4-25 (190)
347 3pqc_A Probable GTP-binding pr 94.3 0.019 6.3E-07 56.3 2.7 23 199-221 25-47 (195)
348 3t1o_A Gliding protein MGLA; G 94.3 0.021 7.1E-07 55.9 3.1 25 199-223 16-40 (198)
349 1upt_A ARL1, ADP-ribosylation 94.3 0.02 7E-07 54.7 2.9 23 198-220 8-30 (171)
350 3bc1_A RAS-related protein RAB 94.2 0.02 6.9E-07 55.8 2.9 23 199-221 13-35 (195)
351 3lxw_A GTPase IMAP family memb 94.2 0.02 6.9E-07 59.8 3.1 24 199-222 23-46 (247)
352 3be4_A Adenylate kinase; malar 94.2 0.021 7.2E-07 58.2 3.1 25 197-221 5-29 (217)
353 2oil_A CATX-8, RAS-related pro 94.2 0.021 7.1E-07 56.2 2.9 23 199-221 27-49 (193)
354 2y8e_A RAB-protein 6, GH09086P 94.2 0.021 7.1E-07 55.0 2.8 23 199-221 16-38 (179)
355 2qmh_A HPR kinase/phosphorylas 94.2 0.041 1.4E-06 55.9 5.0 37 184-221 22-58 (205)
356 1r8s_A ADP-ribosylation factor 94.1 0.022 7.6E-07 54.1 2.9 21 200-220 3-23 (164)
357 1z0f_A RAB14, member RAS oncog 94.1 0.023 7.7E-07 54.7 2.9 23 199-221 17-39 (179)
358 1ko7_A HPR kinase/phosphatase; 94.1 0.036 1.2E-06 60.2 4.7 36 184-220 132-167 (314)
359 2g6b_A RAS-related protein RAB 94.1 0.023 8E-07 54.9 2.9 23 199-221 12-34 (180)
360 2efe_B Small GTP-binding prote 94.1 0.024 8.2E-07 54.8 3.0 23 199-221 14-36 (181)
361 1moz_A ARL1, ADP-ribosylation 94.1 0.016 5.4E-07 56.3 1.7 22 198-219 19-40 (183)
362 2a9k_A RAS-related protein RAL 94.1 0.023 8E-07 55.0 2.9 23 199-221 20-42 (187)
363 3sr0_A Adenylate kinase; phosp 94.0 0.025 8.7E-07 57.6 3.3 23 199-221 2-24 (206)
364 3iby_A Ferrous iron transport 94.0 0.023 7.9E-07 59.8 2.9 23 199-221 3-25 (256)
365 1nrj_B SR-beta, signal recogni 93.9 0.025 8.4E-07 57.0 2.9 23 199-221 14-36 (218)
366 2bme_A RAB4A, RAS-related prot 93.9 0.024 8.3E-07 55.1 2.8 23 199-221 12-34 (186)
367 2xb4_A Adenylate kinase; ATP-b 93.9 0.028 9.7E-07 57.5 3.4 23 199-221 2-24 (223)
368 1wf3_A GTP-binding protein; GT 93.9 0.027 9.2E-07 60.8 3.3 23 199-221 9-31 (301)
369 3con_A GTPase NRAS; structural 93.9 0.026 8.8E-07 55.3 2.9 23 199-221 23-45 (190)
370 1vg8_A RAS-related protein RAB 93.9 0.027 9.1E-07 55.9 3.0 23 199-221 10-32 (207)
371 1ksh_A ARF-like protein 2; sma 93.8 0.027 9.3E-07 54.9 3.0 26 196-221 17-42 (186)
372 2bov_A RAla, RAS-related prote 93.8 0.027 9.2E-07 55.8 2.9 23 199-221 16-38 (206)
373 3iev_A GTP-binding protein ERA 93.8 0.028 9.7E-07 60.7 3.3 23 199-221 12-34 (308)
374 2gf0_A GTP-binding protein DI- 93.8 0.027 9.1E-07 55.5 2.8 22 199-220 10-31 (199)
375 1ak2_A Adenylate kinase isoenz 93.8 0.032 1.1E-06 57.4 3.5 26 196-221 15-40 (233)
376 2gf9_A RAS-related protein RAB 93.8 0.028 9.5E-07 55.2 2.9 23 199-221 24-46 (189)
377 3tkl_A RAS-related protein RAB 93.8 0.028 9.7E-07 55.1 2.9 23 199-221 18-40 (196)
378 1jwy_B Dynamin A GTPase domain 93.7 0.028 9.4E-07 60.3 3.0 23 199-221 26-48 (315)
379 1njg_A DNA polymerase III subu 93.7 0.0092 3.1E-07 60.1 -0.7 24 199-222 47-70 (250)
380 2fg5_A RAB-22B, RAS-related pr 93.7 0.028 9.6E-07 55.5 2.8 23 199-221 25-47 (192)
381 1m7b_A RND3/RHOE small GTP-bin 93.7 0.028 9.5E-07 55.0 2.8 23 199-221 9-31 (184)
382 1e4v_A Adenylate kinase; trans 93.7 0.03 1E-06 56.7 3.2 23 199-221 2-24 (214)
383 3kkq_A RAS-related protein M-R 93.7 0.03 1E-06 54.4 2.9 23 199-221 20-42 (183)
384 2p65_A Hypothetical protein PF 93.7 0.028 9.5E-07 54.5 2.7 27 196-222 42-68 (187)
385 3t5d_A Septin-7; GTP-binding p 93.6 0.028 9.4E-07 59.5 2.8 23 199-221 10-32 (274)
386 1zbd_A Rabphilin-3A; G protein 93.6 0.032 1.1E-06 55.4 3.1 23 199-221 10-32 (203)
387 3a1s_A Iron(II) transport prot 93.6 0.031 1.1E-06 58.8 3.1 23 199-221 7-29 (258)
388 1mh1_A RAC1; GTP-binding, GTPa 93.6 0.031 1.1E-06 54.2 2.9 22 199-220 7-28 (186)
389 3cbq_A GTP-binding protein REM 93.6 0.025 8.6E-07 56.4 2.3 23 199-221 25-47 (195)
390 2dby_A GTP-binding protein; GD 93.6 0.029 9.8E-07 62.4 2.9 22 200-221 4-25 (368)
391 2xtp_A GTPase IMAP family memb 93.6 0.031 1.1E-06 58.3 3.0 23 199-221 24-46 (260)
392 3oes_A GTPase rhebl1; small GT 93.5 0.031 1.1E-06 55.6 2.8 23 199-221 26-48 (201)
393 2grj_A Dephospho-COA kinase; T 93.5 0.036 1.2E-06 55.8 3.3 24 197-220 12-35 (192)
394 3v9p_A DTMP kinase, thymidylat 93.5 0.03 1E-06 58.1 2.7 30 193-222 21-50 (227)
395 1z06_A RAS-related protein RAB 93.5 0.033 1.1E-06 54.6 3.0 23 199-221 22-44 (189)
396 1uj2_A Uridine-cytidine kinase 93.5 0.035 1.2E-06 57.9 3.3 24 198-221 23-46 (252)
397 3dz8_A RAS-related protein RAB 93.5 0.032 1.1E-06 55.0 2.8 23 199-221 25-47 (191)
398 3i8s_A Ferrous iron transport 93.5 0.032 1.1E-06 59.2 3.0 23 199-221 5-27 (274)
399 3t5g_A GTP-binding protein RHE 93.5 0.032 1.1E-06 54.1 2.8 22 199-220 8-29 (181)
400 2bcg_Y Protein YP2, GTP-bindin 93.5 0.032 1.1E-06 55.6 2.8 23 199-221 10-32 (206)
401 2il1_A RAB12; G-protein, GDP, 93.5 0.033 1.1E-06 55.1 2.8 23 199-221 28-50 (192)
402 2wsm_A Hydrogenase expression/ 93.5 0.035 1.2E-06 56.0 3.1 24 198-221 31-54 (221)
403 1x3s_A RAS-related protein RAB 93.5 0.034 1.2E-06 54.4 2.9 23 199-221 17-39 (195)
404 1ltq_A Polynucleotide kinase; 93.5 0.038 1.3E-06 58.9 3.5 23 198-220 3-25 (301)
405 1zj6_A ADP-ribosylation factor 93.4 0.035 1.2E-06 54.4 2.9 22 199-220 18-39 (187)
406 1zd9_A ADP-ribosylation factor 93.4 0.035 1.2E-06 54.6 2.9 23 199-221 24-46 (188)
407 2h57_A ADP-ribosylation factor 93.4 0.029 9.8E-07 55.2 2.3 23 199-221 23-45 (190)
408 3bwd_D RAC-like GTP-binding pr 93.4 0.036 1.2E-06 53.6 2.9 23 199-221 10-32 (182)
409 2a5j_A RAS-related protein RAB 93.4 0.036 1.2E-06 54.6 2.9 23 199-221 23-45 (191)
410 2cjw_A GTP-binding protein GEM 93.4 0.036 1.2E-06 55.1 2.9 22 199-220 8-29 (192)
411 3cph_A RAS-related protein SEC 93.4 0.035 1.2E-06 55.3 2.9 24 198-221 21-44 (213)
412 2o52_A RAS-related protein RAB 93.4 0.036 1.2E-06 55.2 3.0 23 199-221 27-49 (200)
413 2atv_A RERG, RAS-like estrogen 93.3 0.037 1.3E-06 54.7 3.0 23 199-221 30-52 (196)
414 4bas_A ADP-ribosylation factor 93.3 0.038 1.3E-06 54.4 3.0 23 199-221 19-41 (199)
415 2p5s_A RAS and EF-hand domain 93.3 0.038 1.3E-06 54.9 2.9 24 198-221 29-52 (199)
416 2h17_A ADP-ribosylation factor 93.3 0.033 1.1E-06 54.3 2.5 22 199-220 23-44 (181)
417 2vhj_A Ntpase P4, P4; non- hyd 93.3 0.042 1.4E-06 59.9 3.4 29 192-220 118-146 (331)
418 2aka_B Dynamin-1; fusion prote 93.3 0.035 1.2E-06 58.9 2.8 23 199-221 28-50 (299)
419 2f7s_A C25KG, RAS-related prot 93.2 0.041 1.4E-06 55.3 3.1 23 199-221 27-49 (217)
420 3zvl_A Bifunctional polynucleo 93.2 0.04 1.4E-06 62.2 3.4 28 194-221 255-282 (416)
421 2f6r_A COA synthase, bifunctio 93.2 0.04 1.4E-06 58.7 3.3 21 198-218 76-96 (281)
422 3reg_A RHO-like small GTPase; 93.2 0.039 1.3E-06 54.4 2.9 23 199-221 25-47 (194)
423 3a8t_A Adenylate isopentenyltr 93.2 0.05 1.7E-06 59.6 4.0 26 196-221 39-64 (339)
424 2qu8_A Putative nucleolar GTP- 93.2 0.039 1.3E-06 56.3 3.0 22 199-220 31-52 (228)
425 3cmu_A Protein RECA, recombina 93.2 0.12 4.1E-06 68.5 8.0 38 185-222 718-757 (2050)
426 3llu_A RAS-related GTP-binding 93.2 0.042 1.4E-06 54.4 3.1 25 199-223 22-46 (196)
427 4edh_A DTMP kinase, thymidylat 93.1 0.052 1.8E-06 55.6 3.7 29 195-223 4-32 (213)
428 2fv8_A H6, RHO-related GTP-bin 93.1 0.04 1.4E-06 55.1 2.8 23 199-221 27-49 (207)
429 2iwr_A Centaurin gamma 1; ANK 93.1 0.033 1.1E-06 53.8 2.1 22 199-220 9-30 (178)
430 2ew1_A RAS-related protein RAB 93.1 0.04 1.4E-06 55.3 2.8 23 199-221 28-50 (201)
431 4dhe_A Probable GTP-binding pr 93.0 0.022 7.6E-07 57.5 0.8 23 199-221 31-53 (223)
432 2q3h_A RAS homolog gene family 93.0 0.047 1.6E-06 54.0 3.1 23 199-221 22-44 (201)
433 2fu5_C RAS-related protein RAB 93.0 0.03 1E-06 54.4 1.6 22 199-220 10-31 (183)
434 3c5c_A RAS-like protein 12; GD 93.0 0.046 1.6E-06 53.8 3.0 23 199-221 23-45 (187)
435 1gwn_A RHO-related GTP-binding 93.0 0.043 1.5E-06 55.2 2.8 23 199-221 30-52 (205)
436 2b6h_A ADP-ribosylation factor 92.9 0.042 1.4E-06 54.4 2.7 23 198-220 30-52 (192)
437 2j1l_A RHO-related GTP-binding 92.9 0.047 1.6E-06 55.0 3.0 22 199-220 36-57 (214)
438 1sxj_D Activator 1 41 kDa subu 92.8 0.019 6.4E-07 62.4 -0.1 23 200-222 61-83 (353)
439 1p5z_B DCK, deoxycytidine kina 92.8 0.036 1.2E-06 58.1 2.1 27 195-221 22-48 (263)
440 2gco_A H9, RHO-related GTP-bin 92.8 0.046 1.6E-06 54.4 2.8 23 199-221 27-49 (201)
441 2fh5_B SR-beta, signal recogni 92.8 0.048 1.6E-06 54.6 2.9 23 199-221 9-31 (214)
442 2r62_A Cell division protease 92.8 0.017 5.7E-07 60.6 -0.6 32 188-221 37-68 (268)
443 2h92_A Cytidylate kinase; ross 92.7 0.041 1.4E-06 55.7 2.2 25 197-221 3-27 (219)
444 2orw_A Thymidine kinase; TMTK, 92.7 0.061 2.1E-06 53.6 3.4 53 360-418 76-137 (184)
445 3tmk_A Thymidylate kinase; pho 92.6 0.049 1.7E-06 56.0 2.7 29 195-223 3-31 (216)
446 3lv8_A DTMP kinase, thymidylat 92.6 0.062 2.1E-06 56.0 3.4 28 196-223 26-53 (236)
447 3syl_A Protein CBBX; photosynt 92.6 0.059 2E-06 57.4 3.4 28 195-222 65-92 (309)
448 3t15_A Ribulose bisphosphate c 92.5 0.053 1.8E-06 58.1 2.9 27 195-221 34-60 (293)
449 3tqf_A HPR(Ser) kinase; transf 92.5 0.1 3.4E-06 51.9 4.6 33 186-219 6-38 (181)
450 2atx_A Small GTP binding prote 92.5 0.056 1.9E-06 53.2 2.8 22 199-220 20-41 (194)
451 3crm_A TRNA delta(2)-isopenten 92.5 0.057 1.9E-06 58.9 3.1 25 198-222 6-30 (323)
452 1a7j_A Phosphoribulokinase; tr 92.4 0.035 1.2E-06 59.6 1.2 26 196-221 4-29 (290)
453 3cnl_A YLQF, putative uncharac 92.3 0.064 2.2E-06 56.6 3.3 25 198-222 100-124 (262)
454 4djt_A GTP-binding nuclear pro 92.3 0.03 1E-06 56.3 0.7 22 199-220 13-34 (218)
455 3d3q_A TRNA delta(2)-isopenten 92.3 0.056 1.9E-06 59.4 2.8 25 198-222 8-32 (340)
456 2hup_A RAS-related protein RAB 92.3 0.061 2.1E-06 53.7 2.8 23 199-221 31-53 (201)
457 2ocp_A DGK, deoxyguanosine kin 92.3 0.075 2.6E-06 54.8 3.6 26 197-222 2-27 (241)
458 2g3y_A GTP-binding protein GEM 92.3 0.066 2.3E-06 54.5 3.1 23 199-221 39-61 (211)
459 2x77_A ADP-ribosylation factor 92.2 0.044 1.5E-06 53.7 1.7 21 199-219 24-44 (189)
460 3def_A T7I23.11 protein; chlor 92.2 0.062 2.1E-06 56.4 3.0 23 199-221 38-60 (262)
461 3cpj_B GTP-binding protein YPT 92.2 0.065 2.2E-06 54.3 3.0 23 199-221 15-37 (223)
462 3n70_A Transport activator; si 92.2 0.062 2.1E-06 51.0 2.6 27 196-222 23-49 (145)
463 1ypw_A Transitional endoplasmi 92.2 0.025 8.6E-07 69.3 -0.2 33 190-222 504-536 (806)
464 1qvr_A CLPB protein; coiled co 92.1 0.16 5.5E-06 62.6 6.9 26 198-223 589-614 (854)
465 1h65_A Chloroplast outer envel 92.1 0.065 2.2E-06 56.5 2.9 23 199-221 41-63 (270)
466 2yc2_C IFT27, small RAB-relate 92.1 0.032 1.1E-06 55.2 0.5 22 199-220 22-43 (208)
467 4tmk_A Protein (thymidylate ki 92.1 0.08 2.7E-06 54.2 3.5 28 196-223 2-29 (213)
468 3gmt_A Adenylate kinase; ssgci 92.1 0.072 2.5E-06 55.3 3.2 23 199-221 10-32 (230)
469 2hf9_A Probable hydrogenase ni 92.1 0.07 2.4E-06 54.0 3.0 24 198-221 39-62 (226)
470 3exa_A TRNA delta(2)-isopenten 92.0 0.09 3.1E-06 57.1 4.0 25 197-221 3-27 (322)
471 3eie_A Vacuolar protein sortin 92.0 0.076 2.6E-06 57.5 3.4 27 195-221 49-75 (322)
472 2chg_A Replication factor C sm 91.9 0.076 2.6E-06 52.6 3.0 22 200-221 41-62 (226)
473 4gzl_A RAS-related C3 botulinu 91.9 0.07 2.4E-06 53.3 2.8 22 199-220 32-53 (204)
474 3uk6_A RUVB-like 2; hexameric 91.9 0.078 2.7E-06 58.0 3.4 29 195-223 68-96 (368)
475 1d2n_A N-ethylmaleimide-sensit 91.9 0.08 2.7E-06 55.6 3.3 27 195-221 62-88 (272)
476 2j0v_A RAC-like GTP-binding pr 91.8 0.072 2.5E-06 53.2 2.8 23 199-221 11-33 (212)
477 2v1u_A Cell division control p 91.8 0.062 2.1E-06 58.7 2.4 28 195-222 42-69 (387)
478 4b4t_K 26S protease regulatory 91.8 0.075 2.6E-06 60.2 3.1 29 194-222 203-231 (428)
479 3ld9_A DTMP kinase, thymidylat 91.7 0.097 3.3E-06 54.0 3.7 28 195-222 19-46 (223)
480 4b4t_M 26S protease regulatory 91.7 0.078 2.7E-06 60.2 3.1 29 194-222 212-240 (434)
481 1tue_A Replication protein E1; 91.7 0.057 1.9E-06 55.1 1.8 28 194-221 55-82 (212)
482 3q3j_B RHO-related GTP-binding 91.6 0.082 2.8E-06 53.4 2.9 22 199-220 29-50 (214)
483 4dcu_A GTP-binding protein ENG 91.6 0.076 2.6E-06 60.5 2.9 23 199-221 25-47 (456)
484 4b4t_L 26S protease subunit RP 91.5 0.082 2.8E-06 60.0 3.1 29 194-222 212-240 (437)
485 1sky_E F1-ATPase, F1-ATP synth 91.4 0.11 3.6E-06 59.5 3.9 38 184-222 139-176 (473)
486 1ofh_A ATP-dependent HSL prote 91.3 0.089 3E-06 55.7 3.0 26 197-222 50-75 (310)
487 3p32_A Probable GTPase RV1496/ 91.2 0.11 3.8E-06 57.2 3.6 26 197-222 79-104 (355)
488 2qgz_A Helicase loader, putati 91.1 0.11 3.8E-06 56.1 3.5 27 196-222 151-177 (308)
489 3r7w_A Gtpase1, GTP-binding pr 91.1 0.13 4.3E-06 55.5 3.9 25 197-221 3-27 (307)
490 1puj_A YLQF, conserved hypothe 91.0 0.12 4.2E-06 55.1 3.7 26 197-222 120-145 (282)
491 3foz_A TRNA delta(2)-isopenten 91.0 0.13 4.3E-06 55.8 3.8 25 197-221 10-34 (316)
492 2x2e_A Dynamin-1; nitration, h 90.9 0.072 2.5E-06 58.6 1.8 23 199-221 33-55 (353)
493 1wxq_A GTP-binding protein; st 90.8 0.1 3.5E-06 58.5 3.0 41 317-366 181-221 (397)
494 2qp9_X Vacuolar protein sortin 90.8 0.1 3.4E-06 57.5 2.8 27 195-221 82-108 (355)
495 2qby_B CDC6 homolog 3, cell di 90.7 0.12 4.2E-06 56.5 3.4 26 196-221 44-69 (384)
496 3hws_A ATP-dependent CLP prote 90.7 0.11 3.7E-06 57.2 3.0 26 196-221 50-75 (363)
497 1mky_A Probable GTP-binding pr 90.5 0.2 6.8E-06 56.7 5.0 23 199-221 3-25 (439)
498 1f5n_A Interferon-induced guan 90.5 0.11 3.9E-06 61.1 3.0 24 198-221 39-62 (592)
499 2hjg_A GTP-binding protein ENG 90.5 0.11 3.9E-06 58.7 3.0 23 199-221 5-27 (436)
500 3co5_A Putative two-component 90.4 0.08 2.7E-06 50.2 1.3 24 197-220 27-50 (143)
No 1
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=3e-44 Score=399.28 Aligned_cols=207 Identities=22% Similarity=0.340 Sum_probs=181.4
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeC----CCCcc-CceEEEEecCCCCC
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL----NEFVP-QRTCAYISQHDLHH 257 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~----~~~~~-~~~~~yv~Q~d~~~ 257 (875)
++++|+|||++|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++ ....+ ++.+|||+|+..++
T Consensus 16 ~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~ 92 (359)
T 3fvq_A 16 NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLF 92 (359)
T ss_dssp TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCC
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEECcccccccchhhCCEEEEeCCCcCC
Confidence 457999999999999999999999999999999999999997 99999999987 32222 46799999999999
Q ss_pred CCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccC
Q 002833 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (875)
Q Consensus 258 ~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (875)
|++||+||+.|+.+.++.... +...+++++|+.+||++.+|..+++
T Consensus 93 p~ltV~eni~~~l~~~~~~~~----------------------------------~~~~~v~~~l~~~gL~~~~~r~~~~ 138 (359)
T 3fvq_A 93 PHLTVYRNIAYGLGNGKGRTA----------------------------------QERQRIEAMLELTGISELAGRYPHE 138 (359)
T ss_dssp TTSCHHHHHHTTSTTSSCCSH----------------------------------HHHHHHHHHHHHHTCGGGTTSCGGG
T ss_pred CCCCHHHHHHHHHHHcCCChH----------------------------------HHHHHHHHHHHHcCCchHhcCChhh
Confidence 999999999998765432110 0123467899999999998888765
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEE
Q 002833 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (875)
Q Consensus 338 ~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL 417 (875)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..|.|+|+++|+ ..++..+||+|++|
T Consensus 139 -----LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd-~~ea~~~aDri~vl 212 (359)
T 3fvq_A 139 -----LSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHD-REEALQYADRIAVM 212 (359)
T ss_dssp -----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCC-HHHHHHHCSEEEEE
T ss_pred -----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC-HHHHHHHCCEEEEE
Confidence 999999999999999999999999999999999999999999998877778999988654 56899999999999
Q ss_pred eCCeEEEecChhhHH
Q 002833 418 SEGQIVYQGPRDNVL 432 (875)
Q Consensus 418 ~~G~iv~~Gp~~~~~ 432 (875)
++|+++..|+++++.
T Consensus 213 ~~G~i~~~g~~~el~ 227 (359)
T 3fvq_A 213 KQGRILQTASPHELY 227 (359)
T ss_dssp ETTEEEEEECHHHHH
T ss_pred ECCEEEEEeCHHHHH
Confidence 999999999999874
No 2
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=3.1e-44 Score=399.51 Aligned_cols=222 Identities=24% Similarity=0.324 Sum_probs=189.5
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc------CceEEEEecCCCC
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP------QRTCAYISQHDLH 256 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~------~~~~~yv~Q~d~~ 256 (875)
..++|+|||++|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++..... ++.+|||+|+..+
T Consensus 40 ~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~---~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l 116 (366)
T 3tui_C 40 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNL 116 (366)
T ss_dssp EEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCC
T ss_pred CeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCcc
Confidence 356999999999999999999999999999999999999997 9999999999876532 3579999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCcccccccc
Q 002833 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (875)
Q Consensus 257 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (875)
++.+||+||+.|+.+..+... . +...+++++|+.+||.+.++..++
T Consensus 117 ~~~~TV~env~~~~~~~~~~~----------~------------------------~~~~~v~~lL~~vgL~~~~~~~~~ 162 (366)
T 3tui_C 117 LSSRTVFGNVALPLELDNTPK----------D------------------------EVKRRVTELLSLVGLGDKHDSYPS 162 (366)
T ss_dssp CTTSCHHHHHHHHHHHSCCCH----------H------------------------HHHHHHHHHHHHHTCGGGTTCCTT
T ss_pred CCCCCHHHHHHHHHHhcCCCH----------H------------------------HHHHHHHHHHHHcCCchHhcCChh
Confidence 999999999999876543211 0 012346789999999998887776
Q ss_pred CccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEE
Q 002833 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (875)
Q Consensus 337 ~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vil 416 (875)
+ |||||||||+|||||+.+|++|||||||+|||+.++.+|++.|++++++.|.|+|+++|+ ..++.++||+|++
T Consensus 163 ~-----LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHd-l~~~~~~aDrv~v 236 (366)
T 3tui_C 163 N-----LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHE-MDVVKRICDCVAV 236 (366)
T ss_dssp T-----SCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESC-HHHHHHHCSEEEE
T ss_pred h-----CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecC-HHHHHHhCCEEEE
Confidence 4 999999999999999999999999999999999999999999999988779999998765 5578899999999
Q ss_pred EeCCeEEEecChhhHHHHHHHcCCCCCCCCCHHHHHHHh
Q 002833 417 LSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEV 455 (875)
Q Consensus 417 L~~G~iv~~Gp~~~~~~~F~~~Gf~~p~~~~~adfl~~v 455 (875)
|++|++++.|+++++. ..|.......|+...
T Consensus 237 l~~G~iv~~g~~~ev~--------~~p~~~~~~~~~~~~ 267 (366)
T 3tui_C 237 ISNGELIEQDTVSEVF--------SHPKTPLAQKFIQST 267 (366)
T ss_dssp EETTEEEECCBHHHHH--------SSCCSHHHHHHHHHH
T ss_pred EECCEEEEEcCHHHHH--------hCCCcHHHHHHHhhc
Confidence 9999999999999874 234443445555543
No 3
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=4e-44 Score=400.90 Aligned_cols=207 Identities=25% Similarity=0.358 Sum_probs=183.8
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc-CceEEEEecCCCCCCCCC
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMT 261 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lT 261 (875)
..++|+|||++|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++....+ ++.++||+|+..++|++|
T Consensus 15 ~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~lt 91 (381)
T 3rlf_A 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLS 91 (381)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSC
T ss_pred CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC---CeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCC
Confidence 457999999999999999999999999999999999999997 9999999999876544 467999999999999999
Q ss_pred HHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCC
Q 002833 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (875)
Q Consensus 262 V~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (875)
|+||+.|+.+.++... . +...+++++++.+||.+..+..+++
T Consensus 92 V~eni~~~~~~~~~~~----------~------------------------~~~~~v~~~l~~~~L~~~~~r~p~~---- 133 (381)
T 3rlf_A 92 VAENMSFGLKLAGAKK----------E------------------------VINQRVNQVAEVLQLAHLLDRKPKA---- 133 (381)
T ss_dssp HHHHHTHHHHHTTCCH----------H------------------------HHHHHHHHHHHHTTCGGGTTCCGGG----
T ss_pred HHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCchhhcCChhH----
Confidence 9999999876543211 0 1123467899999999988887764
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCe
Q 002833 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (875)
Q Consensus 342 gLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~ 421 (875)
|||||||||+|||||+.+|++|||||||+|||+..+.++.+.|+++.++.|.|+|+++| ...++..+||+|++|++|+
T Consensus 134 -LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTH-d~~ea~~~aDri~vl~~G~ 211 (381)
T 3rlf_A 134 -LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTH-DQVEAMTLADKIVVLDAGR 211 (381)
T ss_dssp -SCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECS-CHHHHHHHCSEEEEEETTE
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEEC-CHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999998767899998765 5568999999999999999
Q ss_pred EEEecChhhHH
Q 002833 422 IVYQGPRDNVL 432 (875)
Q Consensus 422 iv~~Gp~~~~~ 432 (875)
++..|+++++.
T Consensus 212 i~~~g~~~~l~ 222 (381)
T 3rlf_A 212 VAQVGKPLELY 222 (381)
T ss_dssp EEEEECHHHHH
T ss_pred EEEEeCHHHHH
Confidence 99999999874
No 4
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.7e-43 Score=393.41 Aligned_cols=207 Identities=26% Similarity=0.404 Sum_probs=181.8
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc-CceEEEEecCCCCCCCCC
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMT 261 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lT 261 (875)
++++|+|||++|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++....+ ++.++||+|+..++|++|
T Consensus 27 ~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~lt 103 (355)
T 1z47_A 27 GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMT 103 (355)
T ss_dssp STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSC
T ss_pred CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECCcCChhhCcEEEEecCcccCCCCC
Confidence 456999999999999999999999999999999999999997 9999999999865433 467999999999999999
Q ss_pred HHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCC
Q 002833 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (875)
Q Consensus 262 V~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (875)
|+||+.|+.+.++.. +. +....++++++.+||++..|..+++
T Consensus 104 v~eni~~~l~~~~~~----------~~------------------------~~~~~v~~~l~~~gL~~~~~r~~~~---- 145 (355)
T 1z47_A 104 VYDNVSFGLREKRVP----------KD------------------------EMDARVRELLRFMRLESYANRFPHE---- 145 (355)
T ss_dssp HHHHHHHHHHHTTCC----------HH------------------------HHHHHHHHHHHHTTCGGGTTSCGGG----
T ss_pred HHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCChhHhcCCccc----
Confidence 999999986544321 00 0123467899999999988887764
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCe
Q 002833 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (875)
Q Consensus 342 gLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~ 421 (875)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.++.+.|+|+++|+ ..++..+||+|++|++|+
T Consensus 146 -LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-~~~a~~~adri~vl~~G~ 223 (355)
T 1z47_A 146 -LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHD-QEEALEVADRVLVLHEGN 223 (355)
T ss_dssp -SCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSC-HHHHHHHCSEEEEEETTE
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCC-HHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999987668899988765 568889999999999999
Q ss_pred EEEecChhhHH
Q 002833 422 IVYQGPRDNVL 432 (875)
Q Consensus 422 iv~~Gp~~~~~ 432 (875)
++..|+++++.
T Consensus 224 i~~~g~~~~l~ 234 (355)
T 1z47_A 224 VEQFGTPEEVY 234 (355)
T ss_dssp EEEEECHHHHH
T ss_pred EEEEcCHHHHH
Confidence 99999998874
No 5
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=2.3e-43 Score=393.17 Aligned_cols=207 Identities=29% Similarity=0.373 Sum_probs=182.3
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc-CceEEEEecCCCCCCCCC
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMT 261 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lT 261 (875)
++++|+|||++|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++....+ ++.++||+|+..++|++|
T Consensus 15 ~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~lt 91 (359)
T 2yyz_A 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMT 91 (359)
T ss_dssp TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSC
T ss_pred CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC---ccEEEECCEECCCCChhhCcEEEEecCcccCCCCC
Confidence 356999999999999999999999999999999999999997 9999999999876543 467999999999999999
Q ss_pred HHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCC
Q 002833 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (875)
Q Consensus 262 V~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (875)
|+||+.|+.+.++.. +. +....++++++.+||++..+..+++
T Consensus 92 v~eni~~~~~~~~~~----------~~------------------------~~~~~v~~~l~~~~L~~~~~r~~~~---- 133 (359)
T 2yyz_A 92 VFENIAFPLRARRIS----------KD------------------------EVEKRVVEIARKLLIDNLLDRKPTQ---- 133 (359)
T ss_dssp HHHHHHGGGSSSCSH----------HH------------------------HTTHHHHHHHHHTTCGGGTTSCGGG----
T ss_pred HHHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCCchHhcCChhh----
Confidence 999999986544321 10 0123467899999999988888765
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCe
Q 002833 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (875)
Q Consensus 342 gLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~ 421 (875)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.++.|.|+|+++|+ ..++..+||+|++|++|+
T Consensus 134 -LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-~~~~~~~adri~vl~~G~ 211 (359)
T 2yyz_A 134 -LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHD-QAEAMTMASRIAVFNQGK 211 (359)
T ss_dssp -SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESC-HHHHHHHCSEEEEEETTE
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCC-HHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999987668899988765 557889999999999999
Q ss_pred EEEecChhhHH
Q 002833 422 IVYQGPRDNVL 432 (875)
Q Consensus 422 iv~~Gp~~~~~ 432 (875)
++..|+++++.
T Consensus 212 i~~~g~~~~l~ 222 (359)
T 2yyz_A 212 LVQYGTPDEVY 222 (359)
T ss_dssp EEEEECHHHHH
T ss_pred EEEeCCHHHHH
Confidence 99999999874
No 6
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=2.9e-43 Score=379.73 Aligned_cols=208 Identities=26% Similarity=0.347 Sum_probs=176.7
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCC-----ccCceEEEEecCC-CC
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-----VPQRTCAYISQHD-LH 256 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~-----~~~~~~~yv~Q~d-~~ 256 (875)
...+|+|||++|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++... ..++.++||+|++ ..
T Consensus 20 ~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~ 96 (275)
T 3gfo_A 20 GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQ 96 (275)
T ss_dssp SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGT
T ss_pred CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeEEEECCEECCcccccHHHHhCcEEEEEcCcccc
Confidence 345999999999999999999999999999999999999996 99999999998421 1235799999986 34
Q ss_pred CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCcccccccc
Q 002833 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (875)
Q Consensus 257 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (875)
+..+||+||+.|+....+... . +....++++|+.+||.+..+..++
T Consensus 97 ~~~~tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~L~~~~~~~~~ 142 (275)
T 3gfo_A 97 LFSASVYQDVSFGAVNMKLPE----------D------------------------EIRKRVDNALKRTGIEHLKDKPTH 142 (275)
T ss_dssp CCSSBHHHHHHHHHHTSCCCH----------H------------------------HHHHHHHHHHHHTTCGGGTTSBGG
T ss_pred cccCcHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCchhhcCCcc
Confidence 557899999999876443210 0 012346778999999998888876
Q ss_pred CccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEE
Q 002833 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (875)
Q Consensus 337 ~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vil 416 (875)
+ |||||||||+||+||+.+|++|+|||||+|||+.++.++++.|+++++..|.|+|++.|+. .++.++||+|++
T Consensus 143 ~-----LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl-~~~~~~~drv~~ 216 (275)
T 3gfo_A 143 C-----LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDI-DIVPLYCDNVFV 216 (275)
T ss_dssp G-----SCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCC-SSGGGGCSEEEE
T ss_pred c-----CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCH-HHHHHhCCEEEE
Confidence 5 9999999999999999999999999999999999999999999999833488999987765 477889999999
Q ss_pred EeCCeEEEecChhhHHH
Q 002833 417 LSEGQIVYQGPRDNVLE 433 (875)
Q Consensus 417 L~~G~iv~~Gp~~~~~~ 433 (875)
|++|++++.|+++++..
T Consensus 217 l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 217 MKEGRVILQGNPKEVFA 233 (275)
T ss_dssp EETTEEEEEECHHHHTH
T ss_pred EECCEEEEECCHHHHhc
Confidence 99999999999998743
No 7
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.8e-43 Score=392.81 Aligned_cols=207 Identities=28% Similarity=0.400 Sum_probs=182.0
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc-CceEEEEecCCCCCCCCC
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMT 261 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lT 261 (875)
++++|+|||++|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++....+ ++.++||+|+..++|++|
T Consensus 15 ~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~lt 91 (362)
T 2it1_A 15 NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMT 91 (362)
T ss_dssp SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSC
T ss_pred CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHhHCcEEEEecCcccCCCCC
Confidence 356999999999999999999999999999999999999997 9999999999876543 467999999999999999
Q ss_pred HHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCC
Q 002833 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (875)
Q Consensus 262 V~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (875)
|+||+.|+.+.++.. +. +....++++++.+||.+..+..+++
T Consensus 92 v~eni~~~~~~~~~~----------~~------------------------~~~~~v~~~l~~~~L~~~~~r~~~~---- 133 (362)
T 2it1_A 92 VYKNIAFPLELRKAP----------RE------------------------EIDKKVREVAKMLHIDKLLNRYPWQ---- 133 (362)
T ss_dssp HHHHHHHHHHHTTCC----------HH------------------------HHHHHHHHHHHHTTCTTCTTCCGGG----
T ss_pred HHHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCCchHhhCChhh----
Confidence 999999986543321 00 0123467799999999988887764
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCe
Q 002833 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (875)
Q Consensus 342 gLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~ 421 (875)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..|.|+|+++|+ ..++..+||+|++|++|+
T Consensus 134 -LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-~~~a~~~adri~vl~~G~ 211 (362)
T 2it1_A 134 -LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHD-QAEALAMADRIAVIREGE 211 (362)
T ss_dssp -SCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESC-HHHHHHHCSEEEEEETTE
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCC-HHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999987668899988765 558889999999999999
Q ss_pred EEEecChhhHH
Q 002833 422 IVYQGPRDNVL 432 (875)
Q Consensus 422 iv~~Gp~~~~~ 432 (875)
++..|+++++.
T Consensus 212 i~~~g~~~~~~ 222 (362)
T 2it1_A 212 ILQVGTPDEVY 222 (362)
T ss_dssp EEEEECHHHHH
T ss_pred EEEEcCHHHHH
Confidence 99999999874
No 8
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=3.6e-43 Score=371.10 Aligned_cols=207 Identities=21% Similarity=0.237 Sum_probs=174.1
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc-------CceEEEEecCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHDLH 256 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~-------~~~~~yv~Q~d~~ 256 (875)
+.+|+|||++|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++..... ++.++||+|++.+
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l 94 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNL 94 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCC
T ss_pred eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHhhccEEEEecCCcc
Confidence 46999999999999999999999999999999999999997 9999999999876543 2359999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCcc-ccccc
Q 002833 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDIC-ADTMV 335 (875)
Q Consensus 257 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~-~dt~v 335 (875)
++.+||+||+.++......+.. .+. +....+.++++.+||.+. .+..+
T Consensus 95 ~~~~tv~enl~~~~~~~~~~~~-------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~ 143 (235)
T 3tif_A 95 IPLLTALENVELPLIFKYRGAM-------SGE------------------------ERRKRALECLKMAELEERFANHKP 143 (235)
T ss_dssp CTTSCHHHHHHHHHHTCSSSCC-------CHH------------------------HHHHHHHHHHHHTTCCGGGTTCCG
T ss_pred CCCCcHHHHHHHHHHhhhccCC-------CHH------------------------HHHHHHHHHHHHCCCChhhhhCCh
Confidence 9999999999997654311000 000 012235678999999875 37666
Q ss_pred cCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEE
Q 002833 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (875)
Q Consensus 336 g~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vi 415 (875)
+ .|||||||||+||+||+.+|++|||||||+|||+.++.++++.|+++++..|.|+|+++|++. +.++||+|+
T Consensus 144 ~-----~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~ 216 (235)
T 3tif_A 144 N-----QLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERII 216 (235)
T ss_dssp G-----GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEE
T ss_pred h-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEE
Confidence 5 499999999999999999999999999999999999999999999998756899999988764 458999999
Q ss_pred EEeCCeEEEecChhhH
Q 002833 416 LLSEGQIVYQGPRDNV 431 (875)
Q Consensus 416 lL~~G~iv~~Gp~~~~ 431 (875)
+|++|+++..++.+++
T Consensus 217 ~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 217 YLKDGEVEREEKLRGF 232 (235)
T ss_dssp EEETTEEEEEEECC--
T ss_pred EEECCEEEEEcChhhh
Confidence 9999999999988764
No 9
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=4.6e-43 Score=392.97 Aligned_cols=207 Identities=28% Similarity=0.370 Sum_probs=181.2
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCC------Ccc-CceEEEEecCCC
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE------FVP-QRTCAYISQHDL 255 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~------~~~-~~~~~yv~Q~d~ 255 (875)
++++|+|||++|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++.. ..+ ++.++||+|+..
T Consensus 15 ~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~ 91 (372)
T 1g29_1 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYA 91 (372)
T ss_dssp TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCC
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC---ccEEEECCEECccccccccCCHhHCCEEEEeCCCc
Confidence 356999999999999999999999999999999999999997 9999999998754 322 467999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccc
Q 002833 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335 (875)
Q Consensus 256 ~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v 335 (875)
++|++||+||+.|+.+.++... . +....++++++.+||++..+..+
T Consensus 92 l~~~ltv~eni~~~~~~~~~~~----------~------------------------~~~~~v~~~l~~~~L~~~~~r~~ 137 (372)
T 1g29_1 92 LYPHMTVYDNIAFPLKLRKVPR----------Q------------------------EIDQRVREVAELLGLTELLNRKP 137 (372)
T ss_dssp CCTTSCHHHHHHHHHHHTTCCH----------H------------------------HHHHHHHHHHHHHTCGGGTTCCG
T ss_pred cCCCCCHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHCCCchHhcCCc
Confidence 9999999999999876543210 0 01234677999999999888877
Q ss_pred cCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEE
Q 002833 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (875)
Q Consensus 336 g~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vi 415 (875)
++ |||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..+.|+|+++|+ ..++..+||+|+
T Consensus 138 ~~-----LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-~~~a~~~adri~ 211 (372)
T 1g29_1 138 RE-----LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHD-QVEAMTMGDRIA 211 (372)
T ss_dssp GG-----SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESC-HHHHHHHCSEEE
T ss_pred cc-----CCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCC-HHHHHHhCCEEE
Confidence 65 999999999999999999999999999999999999999999999987668899998765 458889999999
Q ss_pred EEeCCeEEEecChhhHH
Q 002833 416 LLSEGQIVYQGPRDNVL 432 (875)
Q Consensus 416 lL~~G~iv~~Gp~~~~~ 432 (875)
+|++|+++..|+++++.
T Consensus 212 vl~~G~i~~~g~~~~l~ 228 (372)
T 1g29_1 212 VMNRGVLQQVGSPDEVY 228 (372)
T ss_dssp EEETTEEEEEECHHHHH
T ss_pred EEeCCEEEEeCCHHHHH
Confidence 99999999999999874
No 10
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=5.5e-43 Score=388.79 Aligned_cols=214 Identities=24% Similarity=0.354 Sum_probs=186.2
Q ss_pred cccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc-CceEEEEecCCCCCCCCCHHH
Q 002833 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTVRE 264 (875)
Q Consensus 186 IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E 264 (875)
+|+|||++|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++....+ ++.++||+|+..++|++||+|
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~e 91 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKK 91 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC---CcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHH
Confidence 999999999999999999999999999999999999997 9999999999875433 467999999999999999999
Q ss_pred HHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCCC
Q 002833 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (875)
Q Consensus 265 tL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLS 344 (875)
|+.|+.+.++... . ..++++++.+||++..|..+++ ||
T Consensus 92 nl~~~~~~~~~~~------------------------------------~-~~v~~~l~~~~L~~~~~~~~~~-----LS 129 (348)
T 3d31_A 92 NLEFGMRMKKIKD------------------------------------P-KRVLDTARDLKIEHLLDRNPLT-----LS 129 (348)
T ss_dssp HHHHHHHHHCCCC------------------------------------H-HHHHHHHHHTTCTTTTTSCGGG-----SC
T ss_pred HHHHHHHHcCCCH------------------------------------H-HHHHHHHHHcCCchHhcCChhh-----CC
Confidence 9999865432110 0 2356789999999998888764 99
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCeEEE
Q 002833 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVY 424 (875)
Q Consensus 345 GGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~iv~ 424 (875)
|||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.++.|.|+|+++|+ ..++..++|+|++|++|+++.
T Consensus 130 gGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd-~~~~~~~adri~vl~~G~i~~ 208 (348)
T 3d31_A 130 GGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHD-QTEARIMADRIAVVMDGKLIQ 208 (348)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESC-HHHHHHHCSEEEEESSSCEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999987778899998765 457889999999999999999
Q ss_pred ecChhhHHHHHHHcCCCCCCCCCHHHHHH
Q 002833 425 QGPRDNVLEFFEHMGFKCPERKGVADFLQ 453 (875)
Q Consensus 425 ~Gp~~~~~~~F~~~Gf~~p~~~~~adfl~ 453 (875)
.|+++++. ..|....+++|+-
T Consensus 209 ~g~~~~~~--------~~p~~~~~a~~~g 229 (348)
T 3d31_A 209 VGKPEEIF--------EKPVEGRVASFVG 229 (348)
T ss_dssp EECHHHHH--------SSCCTTHHHHHHC
T ss_pred ECCHHHHH--------hCcccHHHHHhcC
Confidence 99998873 3455555666653
No 11
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=8.8e-43 Score=365.55 Aligned_cols=200 Identities=23% Similarity=0.319 Sum_probs=173.0
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc-------CceEEEEecCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHDLH 256 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~-------~~~~~yv~Q~d~~ 256 (875)
+++|+|||++|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++..... ++.++|++|++.+
T Consensus 17 ~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l 93 (224)
T 2pcj_A 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT---EGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYL 93 (224)
T ss_dssp EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS---EEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCC
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHHHHhCcEEEEecCccc
Confidence 56999999999999999999999999999999999999996 9999999999865432 1569999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCcccccccc
Q 002833 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (875)
Q Consensus 257 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (875)
++.+||+||+.++....+.. +. +....++++++.+||.+..+..++
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~ 139 (224)
T 2pcj_A 94 IPELTALENVIVPMLKMGKP----------KK------------------------EAKERGEYLLSELGLGDKLSRKPY 139 (224)
T ss_dssp CTTSCHHHHHHHHHHHTTCC----------HH------------------------HHHHHHHHHHHHTTCTTCTTCCGG
T ss_pred CCCCCHHHHHHhHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCCchhhhCChh
Confidence 99999999999875443211 00 011235678999999998888776
Q ss_pred CccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEE
Q 002833 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (875)
Q Consensus 337 ~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vil 416 (875)
+ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++. |.|+|++.|+.. .+ ++||++++
T Consensus 140 ~-----LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~-~~-~~~d~v~~ 211 (224)
T 2pcj_A 140 E-----LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG-GTSIVMVTHERE-LA-ELTHRTLE 211 (224)
T ss_dssp G-----SCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHH-HH-TTSSEEEE
T ss_pred h-----CCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEcCCHH-HH-HhCCEEEE
Confidence 5 9999999999999999999999999999999999999999999999875 889999887743 45 89999999
Q ss_pred EeCCeEEEecCh
Q 002833 417 LSEGQIVYQGPR 428 (875)
Q Consensus 417 L~~G~iv~~Gp~ 428 (875)
|++|+++++|++
T Consensus 212 l~~G~i~~~g~~ 223 (224)
T 2pcj_A 212 MKDGKVVGEITR 223 (224)
T ss_dssp EETTEEEEEEEC
T ss_pred EECCEEEEEeee
Confidence 999999999864
No 12
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1.3e-42 Score=373.15 Aligned_cols=205 Identities=26% Similarity=0.354 Sum_probs=178.3
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCC
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGE 259 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~ 259 (875)
++++|+|||++|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++..... ++.++|++|++.+++.
T Consensus 23 ~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~ 99 (266)
T 4g1u_C 23 QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQPKALARTRAVMRQYSELAFP 99 (266)
T ss_dssp TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS---SCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSC
T ss_pred CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCCHHHHhheEEEEecCCccCCC
Confidence 356999999999999999999999999999999999999997 9999999999876543 3569999999988889
Q ss_pred CCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCcc
Q 002833 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (875)
Q Consensus 260 lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (875)
+||+||+.++....... +....++++++.+||.+..+..+++
T Consensus 100 ~tv~e~l~~~~~~~~~~------------------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-- 141 (266)
T 4g1u_C 100 FSVSEVIQMGRAPYGGS------------------------------------QDRQALQQVMAQTDCLALAQRDYRV-- 141 (266)
T ss_dssp CBHHHHHHGGGTTSCST------------------------------------THHHHHHHHHHHTTCSTTTTSBGGG--
T ss_pred CCHHHHHHhhhhhcCcH------------------------------------HHHHHHHHHHHHcCChhHhcCCccc--
Confidence 99999999975432110 0122457789999999988887764
Q ss_pred CCCCCHHHHHHHHHHHHHhc------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCe
Q 002833 340 RRGISGGQKKRVTTGEMLVG------TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (875)
Q Consensus 340 ~rgLSGGerkRVsIA~aLv~------~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~ 413 (875)
|||||||||+||+||+. +|++|+|||||+|||+.++.++.+.|+++++..+.|+|+++|+ ..++.++||+
T Consensus 142 ---LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHd-l~~~~~~~d~ 217 (266)
T 4g1u_C 142 ---LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHD-LNLAALYADR 217 (266)
T ss_dssp ---CCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSC-HHHHHHHCSE
T ss_pred ---CCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcC-HHHHHHhCCE
Confidence 99999999999999999 9999999999999999999999999999987656788887654 5678889999
Q ss_pred EEEEeCCeEEEecChhhHH
Q 002833 414 IILLSEGQIVYQGPRDNVL 432 (875)
Q Consensus 414 vilL~~G~iv~~Gp~~~~~ 432 (875)
|++|++|++++.|+++++.
T Consensus 218 v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 218 IMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp EEEEETTEEEEEECHHHHC
T ss_pred EEEEECCEEEEEcCHHHHh
Confidence 9999999999999998863
No 13
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.7e-42 Score=371.55 Aligned_cols=205 Identities=21% Similarity=0.328 Sum_probs=175.7
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCC--CCc---cCceEEEEecCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN--EFV---PQRTCAYISQHDLHHG 258 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~--~~~---~~~~~~yv~Q~d~~~~ 258 (875)
+++|+|||++|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++. ... .++.++||+|++.+++
T Consensus 37 ~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~ 113 (263)
T 2olj_A 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD---EGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFP 113 (263)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCT
T ss_pred EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC---CcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCC
Confidence 46999999999999999999999999999999999999996 999999999874 111 1356999999999999
Q ss_pred CCCHHHHHHHhh-hhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccC
Q 002833 259 EMTVRETLDFSG-RCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (875)
Q Consensus 259 ~lTV~EtL~f~a-~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (875)
.+||+||+.|+. +..+.. +. +....++++++.+||.+..+..+++
T Consensus 114 ~~tv~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~L~~~~~~~~~~ 159 (263)
T 2olj_A 114 HMTVLNNITLAPMKVRKWP----------RE------------------------KAEAKAMELLDKVGLKDKAHAYPDS 159 (263)
T ss_dssp TSCHHHHHHHHHHHTSCCC----------HH------------------------HHHHHHHHHHHHTTCGGGTTSCGGG
T ss_pred CCCHHHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHCCCchHhcCChhh
Confidence 999999999864 322211 00 0112356789999999888887764
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEE
Q 002833 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (875)
Q Consensus 338 ~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL 417 (875)
|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++. |.|+|++.|+ ..++.++||+|++|
T Consensus 160 -----LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd-~~~~~~~~d~v~~l 232 (263)
T 2olj_A 160 -----LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE-GMTMVVVTHE-MGFAREVGDRVLFM 232 (263)
T ss_dssp -----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCEEEEECSC-HHHHHHHCSEEEEE
T ss_pred -----CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEcCC-HHHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999999875 8899988765 45778899999999
Q ss_pred eCCeEEEecChhhHH
Q 002833 418 SEGQIVYQGPRDNVL 432 (875)
Q Consensus 418 ~~G~iv~~Gp~~~~~ 432 (875)
++|++++.|+++++.
T Consensus 233 ~~G~i~~~g~~~~~~ 247 (263)
T 2olj_A 233 DGGYIIEEGKPEDLF 247 (263)
T ss_dssp ETTEEEEEECHHHHH
T ss_pred ECCEEEEECCHHHHH
Confidence 999999999998774
No 14
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=4.6e-43 Score=392.44 Aligned_cols=207 Identities=24% Similarity=0.364 Sum_probs=175.2
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc-CceEEEEecCCCCCCCCC
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMT 261 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~~~yv~Q~d~~~~~lT 261 (875)
++++|+|||++|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++....+ ++.++||+|+..++|++|
T Consensus 23 ~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~lt 99 (372)
T 1v43_A 23 NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMT 99 (372)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCC
T ss_pred CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCCCChhhCcEEEEecCcccCCCCC
Confidence 356999999999999999999999999999999999999997 9999999999876543 467999999999999999
Q ss_pred HHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCC
Q 002833 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (875)
Q Consensus 262 V~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (875)
|+||+.|+.+.++.. +. +....++++++.+||.+..+..+++
T Consensus 100 v~eni~~~~~~~~~~----------~~------------------------~~~~~v~~~l~~~~L~~~~~r~~~~---- 141 (372)
T 1v43_A 100 VYENIAFPLKIKKFP----------KD------------------------EIDKRVRWAAELLQIEELLNRYPAQ---- 141 (372)
T ss_dssp HHHHHHTTCC--CCC----------HH------------------------HHHHHHHHHHHHTTCGGGTTSCTTT----
T ss_pred HHHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCChhHhcCChhh----
Confidence 999999986543321 00 0123467799999999988887764
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCe
Q 002833 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (875)
Q Consensus 342 gLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~ 421 (875)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..+.|+|+++|+ ..++..+||+|++|++|+
T Consensus 142 -LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-~~~a~~~adri~vl~~G~ 219 (372)
T 1v43_A 142 -LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHD-QVEAMTMGDRIAVMNRGQ 219 (372)
T ss_dssp -CCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESC-HHHHHHHCSEEEEEETTE
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC-HHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999987668899988765 558889999999999999
Q ss_pred EEEecChhhHH
Q 002833 422 IVYQGPRDNVL 432 (875)
Q Consensus 422 iv~~Gp~~~~~ 432 (875)
++..|+++++.
T Consensus 220 i~~~g~~~~l~ 230 (372)
T 1v43_A 220 LLQIGSPTEVY 230 (372)
T ss_dssp EEEEECHHHHH
T ss_pred EEEeCCHHHHH
Confidence 99999999874
No 15
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=4.7e-43 Score=390.51 Aligned_cols=206 Identities=23% Similarity=0.315 Sum_probs=180.5
Q ss_pred cc--cccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCC-----Cc-cCceEEEEecCCC
Q 002833 184 VR--ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE-----FV-PQRTCAYISQHDL 255 (875)
Q Consensus 184 ~~--IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~-----~~-~~~~~~yv~Q~d~ 255 (875)
++ +|+|||++|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++.. .. .++.++||+|+..
T Consensus 16 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~ 92 (353)
T 1oxx_K 16 GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWA 92 (353)
T ss_dssp GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSC
T ss_pred EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECcccccccCChhhCCEEEEeCCCc
Confidence 45 999999999999999999999999999999999999997 9999999998754 22 2567999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccc
Q 002833 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335 (875)
Q Consensus 256 ~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v 335 (875)
++|++||+||+.|+.+.++... . +....++++++.+||++..+..+
T Consensus 93 l~~~ltv~eni~~~~~~~~~~~----------~------------------------~~~~~v~~~l~~~~L~~~~~~~~ 138 (353)
T 1oxx_K 93 LYPNLTAFENIAFPLTNMKMSK----------E------------------------EIRKRVEEVAKILDIHHVLNHFP 138 (353)
T ss_dssp CCTTSCHHHHHHGGGTTSSCCH----------H------------------------HHHHHHHHHHHHTTCGGGTTSCG
T ss_pred cCCCCCHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCchHhcCCh
Confidence 9999999999999876543210 0 01224677999999999988887
Q ss_pred cCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEE
Q 002833 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (875)
Q Consensus 336 g~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vi 415 (875)
++ |||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..|.|+|+++|+ ..++..+||+|+
T Consensus 139 ~~-----LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-~~~~~~~adri~ 212 (353)
T 1oxx_K 139 RE-----LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHD-PADIFAIADRVG 212 (353)
T ss_dssp GG-----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESC-HHHHHHHCSEEE
T ss_pred hh-----CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEE
Confidence 64 999999999999999999999999999999999999999999999987668899998765 458889999999
Q ss_pred EEeCCeEEEecChhhHH
Q 002833 416 LLSEGQIVYQGPRDNVL 432 (875)
Q Consensus 416 lL~~G~iv~~Gp~~~~~ 432 (875)
+|++|+++..|+++++.
T Consensus 213 vl~~G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 213 VLVKGKLVQVGKPEDLY 229 (353)
T ss_dssp EEETTEEEEEECHHHHH
T ss_pred EEECCEEEEEcCHHHHH
Confidence 99999999999998874
No 16
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=1e-42 Score=373.48 Aligned_cols=205 Identities=23% Similarity=0.305 Sum_probs=175.8
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCC----------Cc------cCceE
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE----------FV------PQRTC 247 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~----------~~------~~~~~ 247 (875)
+++|+|||++|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++.. .. .++.+
T Consensus 19 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 95 (262)
T 1b0u_A 19 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRL 95 (262)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHE
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEccccccccccccccChhhHHHHhcce
Confidence 56999999999999999999999999999999999999996 9999999998751 11 13569
Q ss_pred EEEecCCCCCCCCCHHHHHHHhh-hhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhC
Q 002833 248 AYISQHDLHHGEMTVRETLDFSG-RCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILG 326 (875)
Q Consensus 248 ~yv~Q~d~~~~~lTV~EtL~f~a-~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lg 326 (875)
+||+|++.+++.+||+||+.|+. +..+.. +. +....++++++.+|
T Consensus 96 ~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~ 141 (262)
T 1b0u_A 96 TMVFQHFNLWSHMTVLENVMEAPIQVLGLS----------KH------------------------DARERALKYLAKVG 141 (262)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTTCCC----------HH------------------------HHHHHHHHHHHHTT
T ss_pred EEEecCcccCCCCcHHHHHHhhHHHhcCCC----------HH------------------------HHHHHHHHHHHHcC
Confidence 99999999999999999999864 322211 00 01123577899999
Q ss_pred CCcc-ccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCch
Q 002833 327 LDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAP 405 (875)
Q Consensus 327 L~~~-~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ 405 (875)
|.+. .+..+++ |||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++. |.|+|+++|+ ..
T Consensus 142 L~~~~~~~~~~~-----LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd-~~ 214 (262)
T 1b0u_A 142 IDERAQGKYPVH-----LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHE-MG 214 (262)
T ss_dssp CCHHHHTSCGGG-----SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSC-HH
T ss_pred CCchhhcCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCC-HH
Confidence 9988 8887765 9999999999999999999999999999999999999999999999875 8899988765 45
Q ss_pred hHHhhcCeEEEEeCCeEEEecChhhHH
Q 002833 406 ETYDLFDDIILLSEGQIVYQGPRDNVL 432 (875)
Q Consensus 406 ei~~lfD~vilL~~G~iv~~Gp~~~~~ 432 (875)
++.++||+|++|++|++++.|+++++.
T Consensus 215 ~~~~~~d~v~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 215 FARHVSSHVIFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 778899999999999999999998764
No 17
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=2e-42 Score=370.25 Aligned_cols=214 Identities=25% Similarity=0.361 Sum_probs=176.0
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc----CceEEEEecCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (875)
+++|+|||++|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++..... ++.++||+|++.+++.
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 96 (257)
T 1g6h_A 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKE 96 (257)
T ss_dssp EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGG
T ss_pred EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCC
Confidence 46999999999999999999999999999999999999996 9999999999865422 3469999999999999
Q ss_pred CCHHHHHHHhhhh--cCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccC
Q 002833 260 MTVRETLDFSGRC--LGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (875)
Q Consensus 260 lTV~EtL~f~a~~--~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (875)
+||+||+.++... .+. .....+ ....... .+....++++++.+||++..++.+++
T Consensus 97 ~tv~enl~~~~~~~~~~~------~~~~~~----~~~~~~~-------------~~~~~~~~~~l~~~~l~~~~~~~~~~ 153 (257)
T 1g6h_A 97 MTVLENLLIGEICPGESP------LNSLFY----KKWIPKE-------------EEMVEKAFKILEFLKLSHLYDRKAGE 153 (257)
T ss_dssp SBHHHHHHGGGTSTTSCH------HHHHHH----CSSCCCC-------------HHHHHHHHHHHHHTTCGGGTTSBGGG
T ss_pred CcHHHHHHHHHhhhccCc------cccccc----ccccCCH-------------HHHHHHHHHHHHHcCCchhhCCCchh
Confidence 9999999987532 110 000000 0000000 00122457789999999988888765
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEE
Q 002833 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (875)
Q Consensus 338 ~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL 417 (875)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++. |.|+|++.|+. .++.++||+|++|
T Consensus 154 -----LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~-~~~~~~~d~v~~l 226 (257)
T 1g6h_A 154 -----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-GITFLIIEHRL-DIVLNYIDHLYVM 226 (257)
T ss_dssp -----SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCC-STTGGGCSEEEEE
T ss_pred -----CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCH-HHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999999864 88999987765 4677899999999
Q ss_pred eCCeEEEecChhh
Q 002833 418 SEGQIVYQGPRDN 430 (875)
Q Consensus 418 ~~G~iv~~Gp~~~ 430 (875)
++|++++.|++++
T Consensus 227 ~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 227 FNGQIIAEGRGEE 239 (257)
T ss_dssp ETTEEEEEEESHH
T ss_pred ECCEEEEEeCHHH
Confidence 9999999999887
No 18
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.1e-42 Score=368.30 Aligned_cols=207 Identities=25% Similarity=0.304 Sum_probs=177.5
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc--cCceEEEEecCCCCCCCC
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEM 260 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~l 260 (875)
++++|+|||++|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++.... .++.++|++|++.+++.+
T Consensus 27 ~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~l 103 (256)
T 1vpl_A 27 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNM 103 (256)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTS
T ss_pred CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCC
Confidence 356999999999999999999999999999999999999997 999999999876421 135799999999999999
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccC
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (875)
||+||+.|.....+.. +. +....++++++.+||.+..++.+++
T Consensus 104 tv~enl~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gL~~~~~~~~~~--- 146 (256)
T 1vpl_A 104 QGIEYLRFVAGFYASS----------SS------------------------EIEEMVERATEIAGLGEKIKDRVST--- 146 (256)
T ss_dssp BHHHHHHHHHHHHCCC----------HH------------------------HHHHHHHHHHHHHCCGGGGGSBGGG---
T ss_pred cHHHHHHHHHHHcCCC----------hH------------------------HHHHHHHHHHHHCCCchHhcCChhh---
Confidence 9999999875432211 00 0112356789999999988887765
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCC
Q 002833 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (875)
Q Consensus 341 rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G 420 (875)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|.|+|+++|++ .++..+||++++|++|
T Consensus 147 --LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~-~~~~~~~d~v~~l~~G 222 (256)
T 1vpl_A 147 --YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLTILVSSHNM-LEVEFLCDRIALIHNG 222 (256)
T ss_dssp --CCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEEECCH-HHHTTTCSEEEEEETT
T ss_pred --CCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh-CCCEEEEEcCCH-HHHHHHCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999976 488999987654 5677889999999999
Q ss_pred eEEEecChhhHHH
Q 002833 421 QIVYQGPRDNVLE 433 (875)
Q Consensus 421 ~iv~~Gp~~~~~~ 433 (875)
++++.|+++++.+
T Consensus 223 ~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 223 TIVETGTVEELKE 235 (256)
T ss_dssp EEEEEEEHHHHHH
T ss_pred EEEEecCHHHHHH
Confidence 9999999988754
No 19
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=5.5e-42 Score=363.18 Aligned_cols=204 Identities=22% Similarity=0.339 Sum_probs=173.4
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc----CceEEEEecCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (875)
+++|+|||+.|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++..... ++.++|++|++.+++.
T Consensus 19 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 95 (240)
T 1ji0_A 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPE 95 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTT
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCHHHHHhCCEEEEecCCccCCC
Confidence 46999999999999999999999999999999999999996 9999999999865432 2459999999999999
Q ss_pred CCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhC-CCccccccccCc
Q 002833 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILG-LDICADTMVGDE 338 (875)
Q Consensus 260 lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lg-L~~~~dt~vg~~ 338 (875)
+||+||+.++.... ... . +....++.+++.++ |.+..+..++
T Consensus 96 ltv~enl~~~~~~~-~~~--------------------~--------------~~~~~~~~~l~~~~~l~~~~~~~~~-- 138 (240)
T 1ji0_A 96 LTVYENLMMGAYNR-KDK--------------------E--------------GIKRDLEWIFSLFPRLKERLKQLGG-- 138 (240)
T ss_dssp SBHHHHHHGGGTTC-CCS--------------------S--------------HHHHHHHHHHHHCHHHHTTTTSBSS--
T ss_pred CcHHHHHHHhhhcC-CCH--------------------H--------------HHHHHHHHHHHHcccHhhHhcCChh--
Confidence 99999999864211 000 0 01123466788884 8887777765
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEe
Q 002833 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (875)
Q Consensus 339 ~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~ 418 (875)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ .|.|+|+++|++ .++.++||+|++|+
T Consensus 139 ---~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~tvi~vtHd~-~~~~~~~d~v~~l~ 213 (240)
T 1ji0_A 139 ---TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTTILLVEQNA-LGALKVAHYGYVLE 213 (240)
T ss_dssp ---SSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCCEEEEESCH-HHHHHHCSEEEEEE
T ss_pred ---hCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEEEEE
Confidence 4999999999999999999999999999999999999999999999976 588999987664 46788999999999
Q ss_pred CCeEEEecChhhHH
Q 002833 419 EGQIVYQGPRDNVL 432 (875)
Q Consensus 419 ~G~iv~~Gp~~~~~ 432 (875)
+|++++.|+++++.
T Consensus 214 ~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 214 TGQIVLEGKASELL 227 (240)
T ss_dssp TTEEEEEEEHHHHH
T ss_pred CCEEEEEcCHHHHh
Confidence 99999999988763
No 20
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=5.2e-42 Score=363.20 Aligned_cols=201 Identities=21% Similarity=0.319 Sum_probs=174.5
Q ss_pred cccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc-cCceEEEEecCCCCCCCCCHHH
Q 002833 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-PQRTCAYISQHDLHHGEMTVRE 264 (875)
Q Consensus 186 IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E 264 (875)
+|+|||+.+++ |+++|+||||||||||||+|+|+++|+ +|+|.++|+++.... .++.++|++|++.+++.+||+|
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e 89 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYR 89 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHH
Confidence 59999999999 999999999999999999999999997 999999999986432 2467999999999999999999
Q ss_pred HHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCCC
Q 002833 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (875)
Q Consensus 265 tL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLS 344 (875)
|+.|+.+..+. .+ ....++++++.+||.+..+..+++ ||
T Consensus 90 nl~~~~~~~~~----------~~--------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS 128 (240)
T 2onk_A 90 NIAYGLRNVER----------VE--------------------------RDRRVREMAEKLGIAHLLDRKPAR-----LS 128 (240)
T ss_dssp HHHTTCTTSCH----------HH--------------------------HHHHHHHHHHTTTCTTTTTCCGGG-----SC
T ss_pred HHHHHHHHcCC----------ch--------------------------HHHHHHHHHHHcCCHHHhcCChhh-----CC
Confidence 99987543210 00 012356789999999888887765 99
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCeEEE
Q 002833 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVY 424 (875)
Q Consensus 345 GGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~iv~ 424 (875)
|||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++..|.|+|++.|+ ..++.++||++++|++|++++
T Consensus 129 gGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd-~~~~~~~~d~i~~l~~G~i~~ 207 (240)
T 2onk_A 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHD-LIEAAMLADEVAVMLNGRIVE 207 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESC-HHHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999976558899988765 457788999999999999999
Q ss_pred ecChhhHH
Q 002833 425 QGPRDNVL 432 (875)
Q Consensus 425 ~Gp~~~~~ 432 (875)
.|+++++.
T Consensus 208 ~g~~~~~~ 215 (240)
T 2onk_A 208 KGKLKELF 215 (240)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99998774
No 21
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=3.7e-41 Score=368.18 Aligned_cols=208 Identities=25% Similarity=0.368 Sum_probs=166.7
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (875)
+.+|+|||+.|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++..... ++.++||+|++.+|+ .
T Consensus 67 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 142 (306)
T 3nh6_A 67 RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFN-D 142 (306)
T ss_dssp CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCS---EEEEEETTEETTSBCHHHHHHTEEEECSSCCCCS-E
T ss_pred CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CcEEEECCEEcccCCHHHHhcceEEEecCCccCc-c
Confidence 46999999999999999999999999999999999999997 9999999999976543 467999999988875 5
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccC
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (875)
||+|||.|+..... .+...+++...+ ....++ .+....+|.+|. ..
T Consensus 143 Tv~eNi~~~~~~~~-------------------------~~~~~~~~~~~~------l~~~i~--~lp~gl~t~~~~-~g 188 (306)
T 3nh6_A 143 TIADNIRYGRVTAG-------------------------NDEVEAAAQAAG------IHDAIM--AFPEGYRTQVGE-RG 188 (306)
T ss_dssp EHHHHHHTTSTTCC-------------------------HHHHHHHHHHHT------CHHHHH--HSTTGGGCEEST-TS
T ss_pred cHHHHHHhhcccCC-------------------------HHHHHHHHHHhC------cHHHHH--hccchhhhHhcC-Cc
Confidence 99999998743110 001111111111 111222 234456777774 45
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCC
Q 002833 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (875)
Q Consensus 341 rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G 420 (875)
..|||||||||+|||||+.+|+||||||||+|||+.+...|.+.|+++.+ ++|+|++.|+.. .+. .||+|++|++|
T Consensus 189 ~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~-~~~-~aD~i~vl~~G 264 (306)
T 3nh6_A 189 LKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA--NRTTIVVAHRLS-TVV-NADQILVIKDG 264 (306)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT--TSEEEEECCSHH-HHH-TCSEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--CCEEEEEEcChH-HHH-cCCEEEEEECC
Confidence 67999999999999999999999999999999999999999999999864 678888776654 444 59999999999
Q ss_pred eEEEecChhhHHH
Q 002833 421 QIVYQGPRDNVLE 433 (875)
Q Consensus 421 ~iv~~Gp~~~~~~ 433 (875)
+|++.|+++++.+
T Consensus 265 ~iv~~G~~~el~~ 277 (306)
T 3nh6_A 265 CIVERGRHEALLS 277 (306)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999998864
No 22
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=2.6e-41 Score=363.26 Aligned_cols=205 Identities=23% Similarity=0.371 Sum_probs=175.1
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCC-CCCCCCCH
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHD-LHHGEMTV 262 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d-~~~~~lTV 262 (875)
+++|+|||+.|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++.....++.++|++|++ ..++.+||
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv 96 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERV 96 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEECchHHhhhhEEEEeccchhhcCCCcH
Confidence 46999999999999999999999999999999999999986 999999999875432246799999985 56778999
Q ss_pred HHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCC--ccccccccCccC
Q 002833 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD--ICADTMVGDEMR 340 (875)
Q Consensus 263 ~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~--~~~dt~vg~~~~ 340 (875)
+||+.|+.... ... .+....++++++.+||. +..+..+++
T Consensus 97 ~enl~~~~~~~-~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~~~~--- 138 (266)
T 2yz2_A 97 FDEVAFAVKNF-YPD----------------------------------RDPVPLVKKAMEFVGLDFDSFKDRVPFF--- 138 (266)
T ss_dssp HHHHHHTTTTT-CTT----------------------------------SCSHHHHHHHHHHTTCCHHHHTTCCGGG---
T ss_pred HHHHHHHHHhc-CCH----------------------------------HHHHHHHHHHHHHcCcCCcccccCChhh---
Confidence 99999864321 100 00112356789999998 888877764
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCC
Q 002833 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (875)
Q Consensus 341 rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G 420 (875)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++. |.|+|++.|++. ++..+||++++|++|
T Consensus 139 --LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tii~vtHd~~-~~~~~~d~v~~l~~G 214 (266)
T 2yz2_A 139 --LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL-GKTVILISHDIE-TVINHVDRVVVLEKG 214 (266)
T ss_dssp --SCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCT-TTGGGCSEEEEEETT
T ss_pred --CCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHH-HHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999999765 889999887654 677889999999999
Q ss_pred eEEEecChhhHHH
Q 002833 421 QIVYQGPRDNVLE 433 (875)
Q Consensus 421 ~iv~~Gp~~~~~~ 433 (875)
++++.|+++++..
T Consensus 215 ~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 215 KKVFDGTRMEFLE 227 (266)
T ss_dssp EEEEEEEHHHHHH
T ss_pred EEEEeCCHHHHhc
Confidence 9999999988754
No 23
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.4e-40 Score=359.71 Aligned_cols=208 Identities=26% Similarity=0.329 Sum_probs=170.4
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCC--CCc---cCceEEEEecCCCC--
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN--EFV---PQRTCAYISQHDLH-- 256 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~--~~~---~~~~~~yv~Q~d~~-- 256 (875)
+++|+|||+.|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++. ... .++.++|++|++.+
T Consensus 34 ~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~ 110 (279)
T 2ihy_A 34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKF 110 (279)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTS
T ss_pred EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CeEEEECCEEcccccCCHHHHcCcEEEEEcCccccc
Confidence 46999999999999999999999999999999999999997 999999999875 322 13569999998653
Q ss_pred CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCcccccccc
Q 002833 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (875)
Q Consensus 257 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (875)
.+.+||+||+.++..... + +.. .+.. +....++++++.+||.+..+..++
T Consensus 111 ~~~ltv~enl~~~~~~~~-~--------~~~-------~~~~--------------~~~~~~~~~l~~~gl~~~~~~~~~ 160 (279)
T 2ihy_A 111 QEGERVIDVVISGAFKSI-G--------VYQ-------DIDD--------------EIRNEAHQLLKLVGMSAKAQQYIG 160 (279)
T ss_dssp CTTSBHHHHHHTTC-------------------------CCH--------------HHHHHHHHHHHHTTCGGGTTSBGG
T ss_pred CCCCCHHHHHHhhhhhcc-c--------ccc-------CCcH--------------HHHHHHHHHHHHcCChhHhcCChh
Confidence 345799999998642110 0 000 0000 011235678999999998888876
Q ss_pred CccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE--EEeecCCchhHHhhcCeE
Q 002833 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTM--IVALLQPAPETYDLFDDI 414 (875)
Q Consensus 337 ~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tv--iisi~q~~~ei~~lfD~v 414 (875)
+ |||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++. |+|+ |+++|+. .++.++||+|
T Consensus 161 ~-----LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~-~~~~~~~d~v 233 (279)
T 2ihy_A 161 Y-----LSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFI-EEITANFSKI 233 (279)
T ss_dssp G-----SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCG-GGCCTTCCEE
T ss_pred h-----CCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCH-HHHHHhCCEE
Confidence 5 9999999999999999999999999999999999999999999999876 8888 8877664 4677899999
Q ss_pred EEEeCCeEEEecChhhH
Q 002833 415 ILLSEGQIVYQGPRDNV 431 (875)
Q Consensus 415 ilL~~G~iv~~Gp~~~~ 431 (875)
++|++|++++.|+++++
T Consensus 234 ~~l~~G~i~~~g~~~~~ 250 (279)
T 2ihy_A 234 LLLKDGQSIQQGAVEDI 250 (279)
T ss_dssp EEEETTEEEEEEEHHHH
T ss_pred EEEECCEEEEECCHHHH
Confidence 99999999999998776
No 24
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=4.7e-40 Score=349.81 Aligned_cols=201 Identities=25% Similarity=0.404 Sum_probs=164.0
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCC
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGE 259 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~ 259 (875)
.+++|+|||+.|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++..... ++.++||+|++.+++
T Consensus 21 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~- 96 (247)
T 2ff7_A 21 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN- 96 (247)
T ss_dssp SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-
T ss_pred CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-
Confidence 356999999999999999999999999999999999999996 9999999999865432 356999999988876
Q ss_pred CCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCcccc-------
Q 002833 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICAD------- 332 (875)
Q Consensus 260 lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~d------- 332 (875)
+||+||+.|+.. ... ...++.+++.+||.+..+
T Consensus 97 ~tv~enl~~~~~--~~~--------------------------------------~~~~~~~l~~~~l~~~~~~~~~gl~ 136 (247)
T 2ff7_A 97 RSIIDNISLANP--GMS--------------------------------------VEKVIYAAKLAGAHDFISELREGYN 136 (247)
T ss_dssp SBHHHHHTTTCT--TCC--------------------------------------HHHHHHHHHHHTCHHHHHTSTTGGG
T ss_pred ccHHHHHhccCC--CCC--------------------------------------HHHHHHHHHHhChHHHHHhCcchhh
Confidence 699999988521 000 001233445555544333
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcC
Q 002833 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (875)
Q Consensus 333 t~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD 412 (875)
+.++ +.+..|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++. .++|+|++.|++. .+ +.||
T Consensus 137 ~~~~-~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~g~tviivtH~~~-~~-~~~d 211 (247)
T 2ff7_A 137 TIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC--KGRTVIIIAHRLS-TV-KNAD 211 (247)
T ss_dssp CBCS-TTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH--TTSEEEEECSSGG-GG-TTSS
T ss_pred hhhh-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEeCCHH-HH-HhCC
Confidence 2232 2356799999999999999999999999999999999999999999999994 3889999888754 44 5699
Q ss_pred eEEEEeCCeEEEecChhhHH
Q 002833 413 DIILLSEGQIVYQGPRDNVL 432 (875)
Q Consensus 413 ~vilL~~G~iv~~Gp~~~~~ 432 (875)
+|++|++|++++.|+++++.
T Consensus 212 ~v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 212 RIIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp EEEEEETTEEEEEECHHHHH
T ss_pred EEEEEECCEEEEECCHHHHH
Confidence 99999999999999998773
No 25
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=2.5e-40 Score=351.07 Aligned_cols=203 Identities=25% Similarity=0.333 Sum_probs=168.9
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc---cCceEEEEecCCCCCCC
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGE 259 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~ 259 (875)
.+++|+|||+.|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++.... .++.++|++|++.+++
T Consensus 14 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~- 89 (243)
T 1mv5_A 14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA- 89 (243)
T ss_dssp SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-
T ss_pred CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-
Confidence 456999999999999999999999999999999999999986 999999999986532 2467999999988877
Q ss_pred CCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCcccccccc---
Q 002833 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG--- 336 (875)
Q Consensus 260 lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg--- 336 (875)
.||+||+.|+... .. ....++.+++.+|+.+..+..+.
T Consensus 90 ~tv~enl~~~~~~-~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~~gl~ 130 (243)
T 1mv5_A 90 GTIRENLTYGLEG-DY--------------------------------------TDEDLWQVLDLAFARSFVENMPDQLN 130 (243)
T ss_dssp EEHHHHTTSCTTS-CS--------------------------------------CHHHHHHHHHHHTCTTTTTSSTTGGG
T ss_pred ccHHHHHhhhccC-CC--------------------------------------CHHHHHHHHHHhChHHHHHhCccchh
Confidence 5999999875311 00 00123456778888776654431
Q ss_pred ---CccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCe
Q 002833 337 ---DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (875)
Q Consensus 337 ---~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~ 413 (875)
++.+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++. .++|+|++.|++. .+ ..||+
T Consensus 131 ~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~-~~-~~~d~ 206 (243)
T 1mv5_A 131 TEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM--KGRTTLVIAHRLS-TI-VDADK 206 (243)
T ss_dssp CEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH--TTSEEEEECCSHH-HH-HHCSE
T ss_pred chhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc--CCCEEEEEeCChH-HH-HhCCE
Confidence 23456799999999999999999999999999999999999999999999986 3889999888754 44 56999
Q ss_pred EEEEeCCeEEEecChhhHH
Q 002833 414 IILLSEGQIVYQGPRDNVL 432 (875)
Q Consensus 414 vilL~~G~iv~~Gp~~~~~ 432 (875)
|++|++|++++.|+++++.
T Consensus 207 v~~l~~G~i~~~g~~~~~~ 225 (243)
T 1mv5_A 207 IYFIEKGQITGSGKHNELV 225 (243)
T ss_dssp EEEEETTEECCCSCHHHHH
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988774
No 26
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.2e-39 Score=347.76 Aligned_cols=197 Identities=19% Similarity=0.259 Sum_probs=167.3
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHH
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (875)
+++|+|||+.|++||+++|+||||||||||||+|+|+++|+ +|+|.+ ++.++|++|++.+++.+||+
T Consensus 18 ~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~----------~~~i~~v~q~~~~~~~~tv~ 84 (253)
T 2nq2_C 18 NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEV----------YQSIGFVPQFFSSPFAYSVL 84 (253)
T ss_dssp TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS---EEEEEE----------CSCEEEECSCCCCSSCCBHH
T ss_pred CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEE----------eccEEEEcCCCccCCCCCHH
Confidence 56999999999999999999999999999999999999996 999982 35699999999999999999
Q ss_pred HHHHHhhhhc-CCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCC
Q 002833 264 ETLDFSGRCL-GVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (875)
Q Consensus 264 EtL~f~a~~~-~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (875)
||+.++.... +... .+.. +....++++++.+||.+..+..+++
T Consensus 85 enl~~~~~~~~~~~~-----------------~~~~--------------~~~~~~~~~l~~~~l~~~~~~~~~~----- 128 (253)
T 2nq2_C 85 DIVLMGRSTHINTFA-----------------KPKS--------------HDYQVAMQALDYLNLTHLAKREFTS----- 128 (253)
T ss_dssp HHHHGGGGGGSCTTC-----------------CCCH--------------HHHHHHHHHHHHTTCGGGTTSBGGG-----
T ss_pred HHHHHhhhhhccccc-----------------CCCH--------------HHHHHHHHHHHHcCChHHhcCChhh-----
Confidence 9999874321 1000 0000 0112356789999999888887764
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCeE
Q 002833 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (875)
Q Consensus 343 LSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~i 422 (875)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..|.|+|++.|+. .++.++||++++|++|+
T Consensus 129 LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~- 206 (253)
T 2nq2_C 129 LSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP-NQVVAIANKTLLLNKQN- 206 (253)
T ss_dssp SCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCH-HHHHHHCSEEEEEETTE-
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCe-
Confidence 9999999999999999999999999999999999999999999999875588999887654 46778999999999999
Q ss_pred EEecChhhH
Q 002833 423 VYQGPRDNV 431 (875)
Q Consensus 423 v~~Gp~~~~ 431 (875)
++.|+++++
T Consensus 207 ~~~g~~~~~ 215 (253)
T 2nq2_C 207 FKFGETRNI 215 (253)
T ss_dssp EEEEEHHHH
T ss_pred EecCCHHHH
Confidence 999998776
No 27
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=6.7e-40 Score=348.80 Aligned_cols=197 Identities=24% Similarity=0.346 Sum_probs=170.9
Q ss_pred ccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCCC
Q 002833 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEMT 261 (875)
Q Consensus 185 ~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~lT 261 (875)
++|+|||+.|++||+++|+||||||||||||+|+|+++| . |+|.++|+++..... ++.++|++|++.+++.+|
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 89 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 89 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCB
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCc
Confidence 589999999999999999999999999999999999987 4 999999998754322 356999999999999999
Q ss_pred HHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCC
Q 002833 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (875)
Q Consensus 262 V~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (875)
|+||+.++... .. . ...++++++.+||.+..+..+++
T Consensus 90 v~e~l~~~~~~-~~----------~----------------------------~~~~~~~l~~~~l~~~~~~~~~~---- 126 (249)
T 2qi9_C 90 VWHYLTLHQHD-KT----------R----------------------------TELLNDVAGALALDDKLGRSTNQ---- 126 (249)
T ss_dssp HHHHHHTTCSS-TT----------C----------------------------HHHHHHHHHHTTCGGGTTSBGGG----
T ss_pred HHHHHHHhhcc-CC----------c----------------------------HHHHHHHHHHcCChhHhcCChhh----
Confidence 99999885211 00 0 11246688999999888877664
Q ss_pred CCCHHHHHHHHHHHHHhcCCc-------EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeE
Q 002833 342 GISGGQKKRVTTGEMLVGTAN-------VLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (875)
Q Consensus 342 gLSGGerkRVsIA~aLv~~p~-------iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~v 414 (875)
|||||||||+||++|+.+|+ +|+|||||+|||+.++..+.+.|+++++. |.|+|++.|+. ..+.++||++
T Consensus 127 -LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tviivtHd~-~~~~~~~d~v 203 (249)
T 2qi9_C 127 -LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ-GLAIVMSSHDL-NHTLRHAHRA 203 (249)
T ss_dssp -CCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCH-HHHHHHCSEE
T ss_pred -CCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCH-HHHHHhCCEE
Confidence 99999999999999999999 99999999999999999999999999765 88999887654 4677899999
Q ss_pred EEEeCCeEEEecChhhH
Q 002833 415 ILLSEGQIVYQGPRDNV 431 (875)
Q Consensus 415 ilL~~G~iv~~Gp~~~~ 431 (875)
++|++|++++.|+++++
T Consensus 204 ~~l~~G~i~~~g~~~~~ 220 (249)
T 2qi9_C 204 WLLKGGKMLASGRREEV 220 (249)
T ss_dssp EEEETTEEEEEEEHHHH
T ss_pred EEEECCEEEEeCCHHHH
Confidence 99999999999998776
No 28
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=3.5e-40 Score=351.40 Aligned_cols=206 Identities=24% Similarity=0.306 Sum_probs=165.7
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcC--cCCCCCCccEEEECCEeCCCCcc----CceEEEEecCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK--LGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHH 257 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~--l~~~~~~sG~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~ 257 (875)
+++|+|||++|++||+++|+||||||||||||+|+|+ ++|+ +|+|.++|+++..... ++.++|++|++.++
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 92 (250)
T 2d2e_A 16 ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVE---RGEILLDGENILELSPDERARKGLFLAFQYPVEV 92 (250)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-C
T ss_pred EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEECCCCCHHHHHhCcEEEeccCCccc
Confidence 5699999999999999999999999999999999998 6675 9999999999865432 23489999999999
Q ss_pred CCCCHHHHHHHhhhh-cCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCC-Cccccccc
Q 002833 258 GEMTVRETLDFSGRC-LGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGL-DICADTMV 335 (875)
Q Consensus 258 ~~lTV~EtL~f~a~~-~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL-~~~~dt~v 335 (875)
+.+||+||+.+.... .+.. ...+ +....++++++.+|| .+..++.+
T Consensus 93 ~~~tv~e~l~~~~~~~~~~~-------------------~~~~-------------~~~~~~~~~l~~~gl~~~~~~~~~ 140 (250)
T 2d2e_A 93 PGVTIANFLRLALQAKLGRE-------------------VGVA-------------EFWTKVKKALELLDWDESYLSRYL 140 (250)
T ss_dssp CSCBHHHHHHHHHHHHHTSC-------------------CCHH-------------HHHHHHHHHHHHHTCCGGGGGSBT
T ss_pred cCCCHHHHHHHHHHhhcccc-------------------CCHH-------------HHHHHHHHHHHHcCCChhHhcCCc
Confidence 999999999886421 1100 0000 011235678999999 57777776
Q ss_pred cCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhh-cCeE
Q 002833 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL-FDDI 414 (875)
Q Consensus 336 g~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~l-fD~v 414 (875)
++ +|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|+++|++. ++..+ ||+|
T Consensus 141 ~~----~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~~-~~~~~~~d~v 214 (250)
T 2d2e_A 141 NE----GFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG-PNFGALVITHYQR-ILNYIQPDKV 214 (250)
T ss_dssp TC----C----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS-TTCEEEEECSSSG-GGGTSCCSEE
T ss_pred cc----CCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhcCCEE
Confidence 52 3999999999999999999999999999999999999999999999965 4889999887754 56667 5999
Q ss_pred EEEeCCeEEEecChhh
Q 002833 415 ILLSEGQIVYQGPRDN 430 (875)
Q Consensus 415 ilL~~G~iv~~Gp~~~ 430 (875)
++|++|++++.|+++.
T Consensus 215 ~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 215 HVMMDGRVVATGGPEL 230 (250)
T ss_dssp EEEETTEEEEEESHHH
T ss_pred EEEECCEEEEEeCHHH
Confidence 9999999999999873
No 29
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=7.2e-40 Score=352.94 Aligned_cols=208 Identities=22% Similarity=0.348 Sum_probs=168.8
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (875)
+++|+|||+.|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++..... ++.++||+|++.+++ .
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-R 107 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-S
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEcccCCHHHHhccEEEEecCCcccc-c
Confidence 56999999999999999999999999999999999999996 9999999999865322 356999999988877 5
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHh--CCCccccccccCc
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL--GLDICADTMVGDE 338 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l--gL~~~~dt~vg~~ 338 (875)
||+||+.|+..... .. .++. ++. ....++.+++.+ ||.+..+..++
T Consensus 108 tv~enl~~~~~~~~--~~----~~~~------------------~~~------~~~~~~~~l~~l~~gl~~~~~~~~~-- 155 (271)
T 2ixe_A 108 SFRENIAYGLTRTP--TM----EEIT------------------AVA------MESGAHDFISGFPQGYDTEVGETGN-- 155 (271)
T ss_dssp BHHHHHHTTCSSCC--CH----HHHH------------------HHH------HHHTCHHHHHHSTTGGGSBCCGGGT--
T ss_pred cHHHHHhhhcccCC--hH----HHHH------------------HHH------HHHhHHHHHHhhhcchhhhhcCCcC--
Confidence 99999998642110 00 0000 000 011234567777 77766666554
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEe
Q 002833 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (875)
Q Consensus 339 ~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~ 418 (875)
.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+..++|+|++.|++. .+ ..||+|++|+
T Consensus 156 ---~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~-~~-~~~d~v~~l~ 230 (271)
T 2ixe_A 156 ---QLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS-LA-ERAHHILFLK 230 (271)
T ss_dssp ---TSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH-HH-TTCSEEEEEE
T ss_pred ---CCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HH-HhCCEEEEEE
Confidence 599999999999999999999999999999999999999999999987545889999887653 44 4599999999
Q ss_pred CCeEEEecChhhHH
Q 002833 419 EGQIVYQGPRDNVL 432 (875)
Q Consensus 419 ~G~iv~~Gp~~~~~ 432 (875)
+|+++..|+++++.
T Consensus 231 ~G~i~~~g~~~~l~ 244 (271)
T 2ixe_A 231 EGSVCEQGTHLQLM 244 (271)
T ss_dssp TTEEEEEECHHHHH
T ss_pred CCEEEEECCHHHHH
Confidence 99999999998874
No 30
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=2e-39 Score=348.73 Aligned_cols=222 Identities=22% Similarity=0.256 Sum_probs=174.8
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc--CCCCCCccEEEECCEeCCCCcc----CceEEEEecCCCC
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL--GKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLH 256 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l--~~~~~~sG~I~~nG~~~~~~~~----~~~~~yv~Q~d~~ 256 (875)
++++|+|||++|++||+++|+||||||||||||+|+|+. +|+ +|+|.++|+++..... ++.++|++|++.+
T Consensus 32 ~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l 108 (267)
T 2zu0_C 32 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVT---GGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVE 108 (267)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEEGGGSCHHHHHHHTEEEECSSCCC
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCcCCHHHHhhCCEEEEccCccc
Confidence 356999999999999999999999999999999999984 454 8999999998765432 2348999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCC-ccccccc
Q 002833 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMV 335 (875)
Q Consensus 257 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~v 335 (875)
++.+||.|++.+..... . ... +. +....+ +....++++++.+||. +..+..+
T Consensus 109 ~~~~tv~e~~~~~~~~~------------~-~~~--~~-~~~~~~-----------~~~~~~~~~l~~~gl~~~~~~~~~ 161 (267)
T 2zu0_C 109 IPGVSNQFFLQTALNAV------------R-SYR--GQ-ETLDRF-----------DFQDLMEEKIALLKMPEDLLTRSV 161 (267)
T ss_dssp CTTCBHHHHHHHHHHHH------------H-HGG--GC-CCCCHH-----------HHHHHHHHHHHHTTCCTTTTTSBT
T ss_pred cccccHHHHHHHHHHhh------------h-hhh--cc-ccCCHH-----------HHHHHHHHHHHHcCCChhHhcCCc
Confidence 99999999998753110 0 000 00 000000 0112457789999996 5667665
Q ss_pred cCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhh-cCeE
Q 002833 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL-FDDI 414 (875)
Q Consensus 336 g~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~l-fD~v 414 (875)
+. .|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++ .++|+|++.|++ .++..+ ||++
T Consensus 162 ~~----~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~-~g~tviivtHd~-~~~~~~~~d~v 235 (267)
T 2zu0_C 162 NV----GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD-GKRSFIIVTHYQ-RILDYIKPDYV 235 (267)
T ss_dssp TT----TCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC-SSCEEEEECSSG-GGGGTSCCSEE
T ss_pred cc----CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeeCH-HHHHhhcCCEE
Confidence 41 4999999999999999999999999999999999999999999999865 488999987765 455565 8999
Q ss_pred EEEeCCeEEEecChhhHHHHHHHcCCC
Q 002833 415 ILLSEGQIVYQGPRDNVLEFFEHMGFK 441 (875)
Q Consensus 415 ilL~~G~iv~~Gp~~~~~~~F~~~Gf~ 441 (875)
++|++|++++.|+++++.. ++..||.
T Consensus 236 ~~l~~G~i~~~g~~~~~~~-~~~~~~~ 261 (267)
T 2zu0_C 236 HVLYQGRIVKSGDFTLVKQ-LEEQGYG 261 (267)
T ss_dssp EEEETTEEEEEECTTHHHH-HHTTTCT
T ss_pred EEEECCEEEEEcCHHHHhh-hhhcchh
Confidence 9999999999999988753 4555554
No 31
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=5e-39 Score=344.64 Aligned_cols=194 Identities=21% Similarity=0.211 Sum_probs=166.4
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEE-EEecCCCCCCCCCH
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCA-YISQHDLHHGEMTV 262 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~-yv~Q~d~~~~~lTV 262 (875)
+.+|+|+|+.|+ |++++|+||||||||||||+|+|++ |+ +|+|.++|+++.....++.++ |++|++.+ .+||
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~---~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv 90 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY---SGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTV 90 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC---EEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC---CcEEEECCEECcchHHhhheEEEeCCCCcc--CCcH
Confidence 569999999999 9999999999999999999999999 86 999999999875321245799 99999876 8999
Q ss_pred HHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCC-ccccccccCccCC
Q 002833 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVGDEMRR 341 (875)
Q Consensus 263 ~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~~~~r 341 (875)
+||+.+....... ....++++++.+||. +..+..+++
T Consensus 91 ~enl~~~~~~~~~--------------------------------------~~~~~~~~l~~~gl~~~~~~~~~~~---- 128 (263)
T 2pjz_A 91 NDIVYLYEELKGL--------------------------------------DRDLFLEMLKALKLGEEILRRKLYK---- 128 (263)
T ss_dssp HHHHHHHHHHTCC--------------------------------------CHHHHHHHHHHTTCCGGGGGSBGGG----
T ss_pred HHHHHHhhhhcch--------------------------------------HHHHHHHHHHHcCCChhHhcCChhh----
Confidence 9999986432100 012356788999998 888877764
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcC-eEEEEeCC
Q 002833 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD-DIILLSEG 420 (875)
Q Consensus 342 gLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD-~vilL~~G 420 (875)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ |+|++.|++ .++.++|| ++++|++|
T Consensus 129 -LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~----tviivtHd~-~~~~~~~d~~i~~l~~G 202 (263)
T 2pjz_A 129 -LSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK----EGILVTHEL-DMLNLYKEYKAYFLVGN 202 (263)
T ss_dssp -SCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS----EEEEEESCG-GGGGGCTTSEEEEEETT
T ss_pred -CCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC----cEEEEEcCH-HHHHHhcCceEEEEECC
Confidence 999999999999999999999999999999999999999999998742 888887665 46778999 99999999
Q ss_pred eEEEecChhhHH
Q 002833 421 QIVYQGPRDNVL 432 (875)
Q Consensus 421 ~iv~~Gp~~~~~ 432 (875)
++++.|+++++.
T Consensus 203 ~i~~~g~~~~l~ 214 (263)
T 2pjz_A 203 RLQGPISVSELL 214 (263)
T ss_dssp EEEEEEEHHHHH
T ss_pred EEEEecCHHHHH
Confidence 999999998874
No 32
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=1.1e-38 Score=341.65 Aligned_cols=199 Identities=23% Similarity=0.360 Sum_probs=162.7
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (875)
+++|+|||+.|++||+++|+||||||||||||+|+|++++ +|+|.++|+++..... ++.++||+|++.+++ .
T Consensus 33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (260)
T 2ghi_A 33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-E 107 (260)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC----EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-E
T ss_pred CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC----CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-c
Confidence 4699999999999999999999999999999999999864 7999999998865322 357999999988876 6
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHh-------CCCccccc
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL-------GLDICADT 333 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l-------gL~~~~dt 333 (875)
||+||+.|+... . .. + .+.++++.+ ++.+..|+
T Consensus 108 tv~enl~~~~~~--~-~~----------------------~---------------~~~~~l~~~~l~~~~~~l~~~~~~ 147 (260)
T 2ghi_A 108 TIKYNILYGKLD--A-TD----------------------E---------------EVIKATKSAQLYDFIEALPKKWDT 147 (260)
T ss_dssp EHHHHHHTTCTT--C-CH----------------------H---------------HHHHHHHHTTCHHHHHTSTTGGGC
T ss_pred CHHHHHhccCCC--C-CH----------------------H---------------HHHHHHHHhCCHHHHHhccccccc
Confidence 999999885310 0 00 0 011223333 34555666
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCe
Q 002833 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (875)
Q Consensus 334 ~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~ 413 (875)
.++. .+..|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|+|++.|++. .+ +.||+
T Consensus 148 ~~~~-~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~--~~tviivtH~~~-~~-~~~d~ 222 (260)
T 2ghi_A 148 IVGN-KGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK--NRTLIIIAHRLS-TI-SSAES 222 (260)
T ss_dssp EESS-SSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT--TSEEEEECSSGG-GS-TTCSE
T ss_pred cccC-CcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC--CCEEEEEcCCHH-HH-HhCCE
Confidence 6653 4567999999999999999999999999999999999999999999999853 789999888765 33 56999
Q ss_pred EEEEeCCeEEEecChhhHH
Q 002833 414 IILLSEGQIVYQGPRDNVL 432 (875)
Q Consensus 414 vilL~~G~iv~~Gp~~~~~ 432 (875)
|++|++|+++..|+++++.
T Consensus 223 i~~l~~G~i~~~g~~~~l~ 241 (260)
T 2ghi_A 223 IILLNKGKIVEKGTHKDLL 241 (260)
T ss_dssp EEEEETTEEEEEECHHHHH
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999998874
No 33
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-39 Score=366.89 Aligned_cols=200 Identities=24% Similarity=0.277 Sum_probs=167.6
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCC
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGE 259 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~ 259 (875)
...+|+|||++|++||+++|+|||||||||||++|+|+++ + +|+|.++|+++....+ ++.++||+|+..+|+
T Consensus 33 ~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~---~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~- 107 (390)
T 3gd7_A 33 GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS- 107 (390)
T ss_dssp SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E---EEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-
T ss_pred CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C---CeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-
Confidence 3569999999999999999999999999999999999986 5 8999999999876543 367999999998887
Q ss_pred CCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccC--
Q 002833 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD-- 337 (875)
Q Consensus 260 lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~-- 337 (875)
+||+||+.+.... ....++++++.+||.+..+..+..
T Consensus 108 ~tv~enl~~~~~~-----------------------------------------~~~~v~~~l~~~~L~~~~~~~p~~l~ 146 (390)
T 3gd7_A 108 GTFRKNLDPNAAH-----------------------------------------SDQEIWKVADEVGLRSVIEQFPGKLD 146 (390)
T ss_dssp EEHHHHHCTTCCS-----------------------------------------CHHHHHHHHHHTTCHHHHTTSTTGGG
T ss_pred cCHHHHhhhcccc-----------------------------------------CHHHHHHHHHHhCCHHHHhhcccccc
Confidence 6999999643110 011245577888888776665542
Q ss_pred ----ccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCe
Q 002833 338 ----EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (875)
Q Consensus 338 ----~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~ 413 (875)
+....|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++. .+.|+|++.|+. +....||+
T Consensus 147 ~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~--~~~tvi~vtHd~--e~~~~aDr 222 (390)
T 3gd7_A 147 FVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF--ADCTVILCEARI--EAMLECDQ 222 (390)
T ss_dssp CEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT--TTSCEEEECSSS--GGGTTCSE
T ss_pred cccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcCH--HHHHhCCE
Confidence 2233499999999999999999999999999999999999999999999864 367888887764 45677999
Q ss_pred EEEEeCCeEEEecChhhHH
Q 002833 414 IILLSEGQIVYQGPRDNVL 432 (875)
Q Consensus 414 vilL~~G~iv~~Gp~~~~~ 432 (875)
|++|++|+++..|+++++.
T Consensus 223 i~vl~~G~i~~~g~~~el~ 241 (390)
T 3gd7_A 223 FLVIEENKVRQYDSILELY 241 (390)
T ss_dssp EEEEETTEEEEESSHHHHH
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999999884
No 34
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=4.1e-38 Score=373.39 Aligned_cols=209 Identities=23% Similarity=0.394 Sum_probs=170.1
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCC
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGE 259 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~ 259 (875)
+.++|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.+... ++.++||+|++.+++.
T Consensus 353 ~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ 429 (578)
T 4a82_A 353 EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD 429 (578)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS
T ss_pred CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc
Confidence 356999999999999999999999999999999999999997 9999999999876543 4679999999988876
Q ss_pred CCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCcc
Q 002833 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (875)
Q Consensus 260 lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (875)
||+||+.++... .+.++..+++...+. ++. .-.+.+..||.+|+ .
T Consensus 430 -tv~eni~~~~~~-------------------------~~~~~~~~~~~~~~~------~~~--~~~lp~g~~t~~~~-~ 474 (578)
T 4a82_A 430 -TVKENILLGRPT-------------------------ATDEEVVEAAKMANA------HDF--IMNLPQGYDTEVGE-R 474 (578)
T ss_dssp -BHHHHHGGGCSS-------------------------CCHHHHHHHHHHTTC------HHH--HHTSTTGGGCBCCG-G
T ss_pred -cHHHHHhcCCCC-------------------------CCHHHHHHHHHHhCc------HHH--HHhCcchhhhhhcc-C
Confidence 999999886311 011112222221111 111 23566678899985 4
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeC
Q 002833 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (875)
Q Consensus 340 ~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~ 419 (875)
...|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|+|++.|++. . .+.||+|++|++
T Consensus 475 g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~-~-~~~~d~i~~l~~ 550 (578)
T 4a82_A 475 GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK--DRTTLIVAHRLS-T-ITHADKIVVIEN 550 (578)
T ss_dssp GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSSGG-G-TTTCSEEEEEET
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC--CCEEEEEecCHH-H-HHcCCEEEEEEC
Confidence 567999999999999999999999999999999999999999999999853 689998887765 3 456999999999
Q ss_pred CeEEEecChhhHHH
Q 002833 420 GQIVYQGPRDNVLE 433 (875)
Q Consensus 420 G~iv~~Gp~~~~~~ 433 (875)
|+++++|+++++.+
T Consensus 551 G~i~~~g~~~el~~ 564 (578)
T 4a82_A 551 GHIVETGTHRELIA 564 (578)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999998853
No 35
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=4.2e-39 Score=335.06 Aligned_cols=188 Identities=17% Similarity=0.261 Sum_probs=158.3
Q ss_pred ccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHHH
Q 002833 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRE 264 (875)
Q Consensus 185 ~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 264 (875)
++|+|||+.|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++. ..++.++|++|++.+++.+||+|
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~e 97 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPIT--KVKGKIFFLPEEIIVPRKISVED 97 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGG--GGGGGEEEECSSCCCCTTSBHHH
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEhh--hhcCcEEEEeCCCcCCCCCCHHH
Confidence 7999999999999999999999999999999999999996 999999999875 23567999999999999999999
Q ss_pred HHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCCC
Q 002833 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (875)
Q Consensus 265 tL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLS 344 (875)
|+.++....+. . . ....++++++.+||++. +..++ .||
T Consensus 98 nl~~~~~~~~~-~------------------~-----------------~~~~~~~~l~~~gl~~~-~~~~~-----~LS 135 (214)
T 1sgw_A 98 YLKAVASLYGV-K------------------V-----------------NKNEIMDALESVEVLDL-KKKLG-----ELS 135 (214)
T ss_dssp HHHHHHHHTTC-C------------------C-----------------CHHHHHHHHHHTTCCCT-TSBGG-----GSC
T ss_pred HHHHHHHhcCC-c------------------h-----------------HHHHHHHHHHHcCCCcC-CCChh-----hCC
Confidence 99987543210 0 0 01235678899999877 66655 599
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCeE
Q 002833 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (875)
Q Consensus 345 GGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~i 422 (875)
|||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+. +.|+|++.|++. ++..++|+|+++ .|+|
T Consensus 136 gGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~-g~tiiivtHd~~-~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 136 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSREEL-SYCDVNENLHKY-STKI 210 (214)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSCC-TTSSEEEEGGGG-BC--
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH-HHHHhCCEEEEe-CCcc
Confidence 99999999999999999999999999999999999999999999764 789999887764 667778887654 4443
No 36
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=7e-38 Score=371.87 Aligned_cols=209 Identities=25% Similarity=0.348 Sum_probs=170.2
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCC
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGE 259 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~ 259 (875)
.+++|+|+|++|++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++.+... ++.++||+|++.+++.
T Consensus 355 ~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ 431 (587)
T 3qf4_A 355 TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE---RGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSG 431 (587)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCS---EEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSE
T ss_pred CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEECCEEcccCCHHHHHhheEEECCCCcCcCc
Confidence 356999999999999999999999999999999999999997 9999999999876543 4679999999988865
Q ss_pred CCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCcc
Q 002833 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (875)
Q Consensus 260 lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (875)
||+||+.++.... +.++..+++...+ ..+. .-.+++..||.+|+ .
T Consensus 432 -tv~eni~~~~~~~-------------------------~~~~~~~~~~~~~------~~~~--i~~l~~g~~~~~~~-~ 476 (587)
T 3qf4_A 432 -TIKENLKWGREDA-------------------------TDDEIVEAAKIAQ------IHDF--IISLPEGYDSRVER-G 476 (587)
T ss_dssp -EHHHHHTTTCSSC-------------------------CHHHHHHHHHHTT------CHHH--HHTSSSGGGCEECS-S
T ss_pred -cHHHHHhccCCCC-------------------------CHHHHHHHHHHhC------cHHH--HHhcccchhhHhcC-C
Confidence 9999998763210 0111111211111 1111 22456677888875 4
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeC
Q 002833 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (875)
Q Consensus 340 ~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~ 419 (875)
...|||||||||+|||||+.+|++|+|||||++||+.++.++.+.|+++. .++|+|++.|++. ....||+|++|++
T Consensus 477 ~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~--~~~~~d~i~vl~~ 552 (587)
T 3qf4_A 477 GRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT--KGCTTFIITQKIP--TALLADKILVLHE 552 (587)
T ss_dssp SCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS--TTCEEEEEESCHH--HHTTSSEEEEEET
T ss_pred CCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC--CCCEEEEEecChH--HHHhCCEEEEEEC
Confidence 56799999999999999999999999999999999999999999999985 3789999888764 4468999999999
Q ss_pred CeEEEecChhhHHH
Q 002833 420 GQIVYQGPRDNVLE 433 (875)
Q Consensus 420 G~iv~~Gp~~~~~~ 433 (875)
|+++++|+++++.+
T Consensus 553 G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 553 GKVAGFGTHKELLE 566 (587)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999998864
No 37
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=7e-38 Score=329.41 Aligned_cols=197 Identities=23% Similarity=0.338 Sum_probs=153.4
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCH
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 262 (875)
.+++|+|||++|++||+++|+||||||||||||+|+|+++|+ +|+|.++| .++|++|++.+++. ||
T Consensus 20 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g----------~i~~v~q~~~~~~~-tv 85 (229)
T 2pze_A 20 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQFSWIMPG-TI 85 (229)
T ss_dssp SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEECS----------CEEEECSSCCCCSB-CH
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---ccEEEECC----------EEEEEecCCcccCC-CH
Confidence 457999999999999999999999999999999999999996 99999998 38999999988875 99
Q ss_pred HHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCC
Q 002833 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (875)
Q Consensus 263 ~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (875)
+||+.|+.... .. + .+..++. . .....++. +....++.++. ....
T Consensus 86 ~enl~~~~~~~----~~-------~------------~~~~~~~---~------~l~~~~~~--~~~~~~~~~~~-~~~~ 130 (229)
T 2pze_A 86 KENIIFGVSYD----EY-------R------------YRSVIKA---C------QLEEDISK--FAEKDNIVLGE-GGIT 130 (229)
T ss_dssp HHHHHTTSCCC----HH-------H------------HHHHHHH---T------TCHHHHTT--STTGGGSCBCT-TCTT
T ss_pred HHHhhccCCcC----hH-------H------------HHHHHHH---h------CcHHHHHh--CcccccccccC-CCCc
Confidence 99999863210 00 0 0000000 0 01112222 22233444542 3567
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHH-HHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCe
Q 002833 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKF-LKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (875)
Q Consensus 343 LSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~-L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~ 421 (875)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+. ++++. .+.|+|++.|++. .+ ..||++++|++|+
T Consensus 131 LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~--~~~tvi~vtH~~~-~~-~~~d~v~~l~~G~ 206 (229)
T 2pze_A 131 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVTSKME-HL-KKADKILILHEGS 206 (229)
T ss_dssp SCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT--TTSEEEEECCCHH-HH-HHCSEEEEEETTE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh--CCCEEEEEcCChH-HH-HhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999997 45554 3789999887753 44 4699999999999
Q ss_pred EEEecChhhHH
Q 002833 422 IVYQGPRDNVL 432 (875)
Q Consensus 422 iv~~Gp~~~~~ 432 (875)
+++.|+++++.
T Consensus 207 i~~~g~~~~~~ 217 (229)
T 2pze_A 207 SYFYGTFSELQ 217 (229)
T ss_dssp EEEEECHHHHH
T ss_pred EEEECCHHHHH
Confidence 99999998774
No 38
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=2.2e-37 Score=367.50 Aligned_cols=209 Identities=23% Similarity=0.378 Sum_probs=168.0
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (875)
+++|+|+|++|++||+++|+||||||||||+|+|+|+++|+ +|+|.+||+++.+... ++.++||+|++.+++.
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~- 431 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHLFND- 431 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSS-
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC---CCeEEECCEEccccCHHHHHhhCeEEccCCcCCCC-
Confidence 56999999999999999999999999999999999999997 9999999999876532 3579999999988874
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccC
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (875)
||+||+.++.. ... +.+++.+++...+ .++.++ .+.+..||.+|+ ..
T Consensus 432 tv~eni~~~~~-~~~-----------------------~~~~~~~~l~~~~------l~~~~~--~~p~g~~~~~~~-~~ 478 (582)
T 3b60_A 432 TVANNIAYART-EEY-----------------------SREQIEEAARMAY------AMDFIN--KMDNGLDTIIGE-NG 478 (582)
T ss_dssp BHHHHHHTTTT-SCC-----------------------CHHHHHHHHHTTT------CHHHHH--HSTTGGGSBCCT-TS
T ss_pred CHHHHHhccCC-CCC-----------------------CHHHHHHHHHHcC------CHHHHH--hccccccccccC-CC
Confidence 99999998631 000 0011111111111 111222 233456788875 45
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCC
Q 002833 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (875)
Q Consensus 341 rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G 420 (875)
..|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+ ++|+|++.|++. ..+.||+|++|++|
T Consensus 479 ~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~--~~~~~d~i~~l~~G 554 (582)
T 3b60_A 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLS--TIEQADEIVVVEDG 554 (582)
T ss_dssp CSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSEEEEECSCGG--GTTTCSEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC--CCEEEEEeccHH--HHHhCCEEEEEECC
Confidence 67999999999999999999999999999999999999999999999864 789999888765 34679999999999
Q ss_pred eEEEecChhhHHH
Q 002833 421 QIVYQGPRDNVLE 433 (875)
Q Consensus 421 ~iv~~Gp~~~~~~ 433 (875)
++++.|+++++.+
T Consensus 555 ~i~~~g~~~~l~~ 567 (582)
T 3b60_A 555 IIVERGTHSELLA 567 (582)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEecCHHHHHH
Confidence 9999999998753
No 39
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=5e-37 Score=364.44 Aligned_cols=201 Identities=24% Similarity=0.390 Sum_probs=166.8
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (875)
+++|+|+|+++++||+++|+||||||||||+|+|+|+++|+ +|+|.+||+++.+... ++.++||+|++.+++.
T Consensus 356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~- 431 (582)
T 3b5x_A 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFND- 431 (582)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccc-
Confidence 46999999999999999999999999999999999999997 9999999999865432 4679999999988874
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhC-------CCccccc
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILG-------LDICADT 333 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lg-------L~~~~dt 333 (875)
||+||+.++.. +. .+.++ ++++++.+| +.+..||
T Consensus 432 tv~eni~~~~~---~~---------------------~~~~~---------------~~~~~~~~~l~~~~~~~p~g~~t 472 (582)
T 3b5x_A 432 TIANNIAYAAE---GE---------------------YTREQ---------------IEQAARQAHAMEFIENMPQGLDT 472 (582)
T ss_pred cHHHHHhccCC---CC---------------------CCHHH---------------HHHHHHHCCCHHHHHhCcccccc
Confidence 99999998631 00 00011 122233333 3345678
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCe
Q 002833 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (875)
Q Consensus 334 ~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~ 413 (875)
.+|+ ....|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|+|++.|++. ..+.||+
T Consensus 473 ~~~~-~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~--~~~~~d~ 547 (582)
T 3b5x_A 473 VIGE-NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK--NKTVLVIAHRLS--TIEQADE 547 (582)
T ss_pred hhcC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC--CCEEEEEecCHH--HHHhCCE
Confidence 8875 4567999999999999999999999999999999999999999999999863 789999888764 3467999
Q ss_pred EEEEeCCeEEEecChhhHH
Q 002833 414 IILLSEGQIVYQGPRDNVL 432 (875)
Q Consensus 414 vilL~~G~iv~~Gp~~~~~ 432 (875)
|++|++|++++.|+++++.
T Consensus 548 i~~l~~G~i~~~g~~~~l~ 566 (582)
T 3b5x_A 548 ILVVDEGEIIERGRHADLL 566 (582)
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999998875
No 40
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=4.6e-37 Score=365.72 Aligned_cols=203 Identities=23% Similarity=0.395 Sum_probs=167.7
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (875)
+++|+|+|+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++.+... ++.++||+|++.+++ .
T Consensus 357 ~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 432 (595)
T 2yl4_A 357 VPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPA---SGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFS-C 432 (595)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCS---EEEEEETTEETTTBCHHHHHHSEEEECSSCCCCS-S
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CcEEEECCEEhhhCCHHHHHhceEEEccCCcccC-C
Confidence 46999999999999999999999999999999999999997 9999999999876543 357999999998886 5
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhC-------CCccccc
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILG-------LDICADT 333 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lg-------L~~~~dt 333 (875)
||+||+.++...... .+.+ .++++++.+| +++..||
T Consensus 433 tv~eni~~~~~~~~~----------------------~~~~---------------~~~~~~~~~~l~~~~~~l~~g~~~ 475 (595)
T 2yl4_A 433 SIAENIAYGADDPSS----------------------VTAE---------------EIQRVAEVANAVAFIRNFPQGFNT 475 (595)
T ss_dssp BHHHHHHTTSSSTTT----------------------SCHH---------------HHHHHHHHTTCHHHHHTSSSGGGC
T ss_pred CHHHHHhhcCCCccc----------------------cCHH---------------HHHHHHHHcCCHHHHHhCcccccc
Confidence 999999986421000 0011 1223334443 4566788
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCe
Q 002833 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (875)
Q Consensus 334 ~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~ 413 (875)
.+|+ ....|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|+|++.|++. . .+.||+
T Consensus 476 ~~~~-~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~-~-~~~~d~ 550 (595)
T 2yl4_A 476 VVGE-KGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD--GRTVLVIAHRLS-T-IKNANM 550 (595)
T ss_dssp BCSS-SSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT--TSEEEEECCCHH-H-HHHSSE
T ss_pred cccC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc--CCEEEEEecCHH-H-HHcCCE
Confidence 8875 3567999999999999999999999999999999999999999999999875 789999888754 3 467999
Q ss_pred EEEEeCCeEEEecChhhHH
Q 002833 414 IILLSEGQIVYQGPRDNVL 432 (875)
Q Consensus 414 vilL~~G~iv~~Gp~~~~~ 432 (875)
|++|++|++++.|+++++.
T Consensus 551 i~~l~~G~i~~~g~~~~l~ 569 (595)
T 2yl4_A 551 VAVLDQGKITEYGKHEELL 569 (595)
T ss_dssp EEEEETTEEEEEECSCC--
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999998874
No 41
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=7.7e-38 Score=330.74 Aligned_cols=195 Identities=23% Similarity=0.310 Sum_probs=153.5
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHH
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (875)
+++|+|||+.|++||+++|+||||||||||||+|+|+++|+ +|+|.++| .++|++|++. ++.+||+
T Consensus 18 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~-~~~~tv~ 83 (237)
T 2cbz_A 18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVAIKG----------SVAYVPQQAW-IQNDSLR 83 (237)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEE---EEEEEECS----------CEEEECSSCC-CCSEEHH
T ss_pred CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECC----------EEEEEcCCCc-CCCcCHH
Confidence 56999999999999999999999999999999999999986 99999998 3899999975 5688999
Q ss_pred HHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCc-cccccccCccCCC
Q 002833 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI-CADTMVGDEMRRG 342 (875)
Q Consensus 264 EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~~dt~vg~~~~rg 342 (875)
||+.|+.... .. ..+...+ ...+++.+++.+ ..++.++ ..+..
T Consensus 84 enl~~~~~~~--~~---------------------~~~~~~~------------~~~l~~~~~~~~~~~~~~~~-~~~~~ 127 (237)
T 2cbz_A 84 ENILFGCQLE--EP---------------------YYRSVIQ------------ACALLPDLEILPSGDRTEIG-EKGVN 127 (237)
T ss_dssp HHHHTTSCCC--TT---------------------HHHHHHH------------HTTCHHHHTTSTTGGGSEES-TTSBC
T ss_pred HHhhCccccC--HH---------------------HHHHHHH------------HHhhHHHHHhcccccccccc-CCCCC
Confidence 9999864211 00 0000000 001122333322 2233333 34567
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHH---HHHHhCCcEEEEeecCCchhHHhhcCeEEEEeC
Q 002833 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLK---QMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (875)
Q Consensus 343 LSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~---~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~ 419 (875)
|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|+ ++. .++|+|++.|++. .+ +.||+|++|++
T Consensus 128 LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~--~~~tviivtH~~~-~~-~~~d~v~~l~~ 203 (237)
T 2cbz_A 128 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML--KNKTRILVTHSMS-YL-PQVDVIIVMSG 203 (237)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT--TTSEEEEECSCST-TG-GGSSEEEEEET
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc--CCCEEEEEecChH-HH-HhCCEEEEEeC
Confidence 99999999999999999999999999999999999999999995 343 3789999988765 33 57999999999
Q ss_pred CeEEEecChhhHH
Q 002833 420 GQIVYQGPRDNVL 432 (875)
Q Consensus 420 G~iv~~Gp~~~~~ 432 (875)
|++++.|+++++.
T Consensus 204 G~i~~~g~~~~~~ 216 (237)
T 2cbz_A 204 GKISEMGSYQELL 216 (237)
T ss_dssp TEEEEEECHHHHH
T ss_pred CEEEEeCCHHHHh
Confidence 9999999998764
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.8e-37 Score=369.24 Aligned_cols=209 Identities=23% Similarity=0.358 Sum_probs=168.9
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCC
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGE 259 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~ 259 (875)
++++|+|+|+++++||+++|+||||||||||+|+|+|+++|+ +|+|.+||+++.+... ++.++||+|++.+++
T Consensus 367 ~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~- 442 (598)
T 3qf4_B 367 KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFS- 442 (598)
T ss_dssp SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCS-
T ss_pred CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CeEEEECCEEhhhCCHHHHHhceEEEeCCCcccc-
Confidence 456999999999999999999999999999999999999997 9999999999876543 467999999988875
Q ss_pred CCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCcc
Q 002833 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (875)
Q Consensus 260 lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (875)
.||+||+.++.... .+ ++..+++...+ .++.+ -.+.+..||.+|+ .
T Consensus 443 ~tv~eni~~~~~~~----------------------~~---~~~~~~~~~~~------~~~~~--~~~~~g~~t~~~~-~ 488 (598)
T 3qf4_B 443 TTVKENLKYGNPGA----------------------TD---EEIKEAAKLTH------SDHFI--KHLPEGYETVLTD-N 488 (598)
T ss_dssp SBHHHHHHSSSTTC----------------------CT---THHHHHTTTTT------CHHHH--HTSTTGGGCBCHH-H
T ss_pred ccHHHHHhcCCCCC----------------------CH---HHHHHHHHHhC------CHHHH--HhccccccchhcC-C
Confidence 59999998863110 00 01111111000 11122 2455667888874 4
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeC
Q 002833 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (875)
Q Consensus 340 ~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~ 419 (875)
...|||||||||+|||||+.+|++|+|||||+|||+.+..++.+.|+++. .++|+|++.|++. . .+.||+|++|++
T Consensus 489 g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~-~-~~~~d~i~~l~~ 564 (598)
T 3qf4_B 489 GEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM--EGKTSIIIAHRLN-T-IKNADLIIVLRD 564 (598)
T ss_dssp HTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH--TTSEEEEESCCTT-H-HHHCSEEEEECS
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc--CCCEEEEEecCHH-H-HHcCCEEEEEEC
Confidence 56799999999999999999999999999999999999999999999985 3889999888875 3 456999999999
Q ss_pred CeEEEecChhhHHH
Q 002833 420 GQIVYQGPRDNVLE 433 (875)
Q Consensus 420 G~iv~~Gp~~~~~~ 433 (875)
|+++++|+++++.+
T Consensus 565 G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 565 GEIVEMGKHDELIQ 578 (598)
T ss_dssp SSEEECSCHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999998753
No 43
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=4e-37 Score=394.41 Aligned_cols=211 Identities=26% Similarity=0.342 Sum_probs=178.6
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCC
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGE 259 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~ 259 (875)
+.++|+|||++|+|||.+||+||||||||||+++|.|+++|. +|+|.+||.++.+... ++.++||+|++.+|..
T Consensus 1091 ~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~---~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~g 1167 (1321)
T 4f4c_A 1091 EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL---GGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDC 1167 (1321)
T ss_dssp SSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCS---SSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSE
T ss_pred CCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCC---CCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCc
Confidence 356999999999999999999999999999999999999997 9999999999988754 5789999999988865
Q ss_pred CCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCcc
Q 002833 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (875)
Q Consensus 260 lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (875)
||+|||.|+..- ++.+.+++.+++...+.+.. +-.|++..||.||+.
T Consensus 1168 -TIreNI~~gld~-----------------------~~~sd~ei~~Al~~a~l~~~--------I~~Lp~GldT~vge~- 1214 (1321)
T 4f4c_A 1168 -SIAENIIYGLDP-----------------------SSVTMAQVEEAARLANIHNF--------IAELPEGFETRVGDR- 1214 (1321)
T ss_dssp -EHHHHHSSSSCT-----------------------TTSCHHHHHHHHHHTTCHHH--------HHTSTTTTCSEETTT-
T ss_pred -cHHHHHhccCCC-----------------------CCCCHHHHHHHHHHhCChHH--------HHcCcCCCCCEecCC-
Confidence 999999886321 12233445555544433221 236788899999964
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeC
Q 002833 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (875)
Q Consensus 340 ~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~ 419 (875)
...||||||||++|||||+.+|+||+||||||+||+.|...|.+.|+++. .++|+|+..|..+ +...||+|+||++
T Consensus 1215 G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~--~~~TvI~IAHRLs--Ti~~aD~I~Vld~ 1290 (1321)
T 4f4c_A 1215 GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR--EGRTCIVIAHRLN--TVMNADCIAVVSN 1290 (1321)
T ss_dssp SCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS--SSSEEEEECSSSS--TTTTCSEEEEESS
T ss_pred CcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc--CCCEEEEeccCHH--HHHhCCEEEEEEC
Confidence 45699999999999999999999999999999999999999999999875 3789999888764 6678999999999
Q ss_pred CeEEEecChhhHHH
Q 002833 420 GQIVYQGPRDNVLE 433 (875)
Q Consensus 420 G~iv~~Gp~~~~~~ 433 (875)
|+|+++|+++++++
T Consensus 1291 G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1291 GTIIEKGTHTQLMS 1304 (1321)
T ss_dssp SSEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999999874
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.1e-36 Score=390.42 Aligned_cols=209 Identities=26% Similarity=0.342 Sum_probs=179.6
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCC
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGE 259 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~ 259 (875)
+.++|+|+|++|+||++++|+||+|||||||+++|.|.++|. +|+|.+||+++.+... ++.++||+|++.+|..
T Consensus 430 ~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~---~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~ 506 (1321)
T 4f4c_A 430 DVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVL---KGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNC 506 (1321)
T ss_dssp TSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSE
T ss_pred CCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccc---cCcccCCCccchhccHHHHhhcccccCCcceeeCC
Confidence 457999999999999999999999999999999999999997 9999999999988754 4679999999887764
Q ss_pred CCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCcc
Q 002833 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (875)
Q Consensus 260 lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (875)
||+||+.|+. |+.+.+++.+++...+.+. . +-.|++..||.||+..
T Consensus 507 -TI~eNI~~g~-------------------------~~~~~~~v~~a~~~a~l~~------~--i~~lp~G~~T~vGe~G 552 (1321)
T 4f4c_A 507 -TIEENISLGK-------------------------EGITREEMVAACKMANAEK------F--IKTLPNGYNTLVGDRG 552 (1321)
T ss_dssp -EHHHHHHTTC-------------------------TTCCHHHHHHHHHHTTCHH------H--HHHSTTTTSSEESSSS
T ss_pred -chhHHHhhhc-------------------------ccchHHHHHHHHHHccchh------H--HHcCCCCCccEecCCC
Confidence 9999999872 2233445555655443322 1 2357888999999754
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeC
Q 002833 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (875)
Q Consensus 340 ~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~ 419 (875)
..||||||||++||||++.+|+||+||||||+||+.+...+.+.|+++.+ ++|+|++.|+.+ +.+.||+|++|++
T Consensus 553 -~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~iiiaHrls--~i~~aD~Iivl~~ 627 (1321)
T 4f4c_A 553 -TQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK--GRTTIIIAHRLS--TIRNADLIISCKN 627 (1321)
T ss_dssp -CCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT--TSEEEEECSCTT--TTTTCSEEEEEET
T ss_pred -CCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhC--CCEEEEEcccHH--HHHhCCEEEEeeC
Confidence 45999999999999999999999999999999999999999999999874 789999888875 6788999999999
Q ss_pred CeEEEecChhhHHH
Q 002833 420 GQIVYQGPRDNVLE 433 (875)
Q Consensus 420 G~iv~~Gp~~~~~~ 433 (875)
|+|+++|+++++.+
T Consensus 628 G~ive~Gth~eL~~ 641 (1321)
T 4f4c_A 628 GQVVEVGDHRALMA 641 (1321)
T ss_dssp TEEEEEECHHHHHT
T ss_pred CeeeccCCHHHHHH
Confidence 99999999999863
No 45
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=8.5e-36 Score=323.84 Aligned_cols=195 Identities=22% Similarity=0.325 Sum_probs=149.5
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHH
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (875)
+++|+|||+.|++|++++|+||||||||||||+|+|+++|+ +|+|.++| .++|++|++.+++. ||+
T Consensus 51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~l~~~-tv~ 116 (290)
T 2bbs_A 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQNSWIMPG-TIK 116 (290)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEE---EEEEECCS----------CEEEECSSCCCCSS-BHH
T ss_pred ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECC----------EEEEEeCCCccCcc-cHH
Confidence 46999999999999999999999999999999999999986 99999998 38999999888875 999
Q ss_pred HHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCC
Q 002833 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (875)
Q Consensus 264 EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (875)
||+. +... . .. . .+..++. . ..+..++.+ ....++.++. .+..|
T Consensus 117 enl~-~~~~---~-~~----~---------------~~~~~~~---~------~l~~~l~~~--~~~~~~~~~~-~~~~L 160 (290)
T 2bbs_A 117 ENII-GVSY---D-EY----R---------------YRSVIKA---C------QLEEDISKF--AEKDNIVLGE-GGITL 160 (290)
T ss_dssp HHHH-TTCC---C-HH----H---------------HHHHHHH---T------TCHHHHHTS--TTGGGCBC-----CCC
T ss_pred HHhh-Cccc---c-hH----H---------------HHHHHHH---h------ChHHHHHhc--cccccchhcC-ccCcC
Confidence 9997 4211 0 00 0 0000000 0 011122222 2233444442 35679
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHH-HHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCeE
Q 002833 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFL-KQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (875)
Q Consensus 344 SGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L-~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~i 422 (875)
||||||||+||++|+.+|++|+|||||+|||+.++..+.+.+ +++. .++|+|++.|++ ..+ ..||++++|++|++
T Consensus 161 SgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~--~~~tviivtHd~-~~~-~~~d~i~~l~~G~i 236 (290)
T 2bbs_A 161 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVTSKM-EHL-KKADKILILHEGSS 236 (290)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT--TTSEEEEECCCH-HHH-HHSSEEEEEETTEE
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh--CCCEEEEEecCH-HHH-HcCCEEEEEECCeE
Confidence 999999999999999999999999999999999999999974 5553 378999988775 344 56999999999999
Q ss_pred EEecChhhHH
Q 002833 423 VYQGPRDNVL 432 (875)
Q Consensus 423 v~~Gp~~~~~ 432 (875)
++.|+++++.
T Consensus 237 ~~~g~~~~l~ 246 (290)
T 2bbs_A 237 YFYGTFSELQ 246 (290)
T ss_dssp EEEECHHHHH
T ss_pred EEeCCHHHHh
Confidence 9999998874
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.2e-34 Score=370.56 Aligned_cols=208 Identities=25% Similarity=0.333 Sum_probs=170.4
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (875)
.++|+|||++|+|||+++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++||+|++.+++.
T Consensus 403 ~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~- 478 (1284)
T 3g5u_A 403 VQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL---DGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT- 478 (1284)
T ss_dssp CCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSS-
T ss_pred CcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCc-
Confidence 46999999999999999999999999999999999999997 9999999999876643 4679999999988875
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccC
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (875)
||+||+.|+... .+.+++.+++...+. ++.++ .|.+..||.+|+ ..
T Consensus 479 ti~eNi~~g~~~-------------------------~~~~~~~~~~~~~~~------~~~i~--~l~~g~~t~~~~-~g 524 (1284)
T 3g5u_A 479 TIAENIRYGRED-------------------------VTMDEIEKAVKEANA------YDFIM--KLPHQFDTLVGE-RG 524 (1284)
T ss_dssp CHHHHHHHHCSS-------------------------CCHHHHHHHHHHTTC------HHHHH--HSTTGGGCCCSS-SS
T ss_pred cHHHHHhcCCCC-------------------------CCHHHHHHHHHHhCc------HHHHH--hccccccccccC-CC
Confidence 999999987321 011122222222111 11222 466778999986 45
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCC
Q 002833 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (875)
Q Consensus 341 rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G 420 (875)
..|||||||||+|||||+.+|+||+|||||++||+.+...+.+.|+.+.+ |+|+|++.|+.. . ...||+|++|++|
T Consensus 525 ~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~-~-i~~~d~i~vl~~G 600 (1284)
T 3g5u_A 525 AQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKARE--GRTTIVIAHRLS-T-VRNADVIAGFDGG 600 (1284)
T ss_dssp CSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHT--TSEEEEECSCHH-H-HTTCSEEEECSSS
T ss_pred CccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcC--CCEEEEEecCHH-H-HHcCCEEEEEECC
Confidence 57999999999999999999999999999999999999999999998753 789998877654 3 4569999999999
Q ss_pred eEEEecChhhHHH
Q 002833 421 QIVYQGPRDNVLE 433 (875)
Q Consensus 421 ~iv~~Gp~~~~~~ 433 (875)
+++++|+++++.+
T Consensus 601 ~i~~~g~~~~l~~ 613 (1284)
T 3g5u_A 601 VIVEQGNHDELMR 613 (1284)
T ss_dssp CCCCEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999998864
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=8.7e-34 Score=362.71 Aligned_cols=210 Identities=23% Similarity=0.333 Sum_probs=170.0
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (875)
.++|+|||++|+|||+++|+||||||||||+++|+|+++|+ +|+|.++|+++..... ++.++||+|++.++ ..
T Consensus 1046 ~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~ 1121 (1284)
T 3g5u_A 1046 IPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPM---AGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILF-DC 1121 (1284)
T ss_dssp CCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCS---EEEEESSSSCTTSSCHHHHTTSCEEEESSCCCC-SS
T ss_pred CeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEcccCCHHHHHhceEEECCCCccc-cc
Confidence 46999999999999999999999999999999999999997 9999999999876543 56799999998766 56
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccC
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (875)
||+||+.++...... +.++..+++...+ .+.. +-.+.+..||.||+ ..
T Consensus 1122 ti~eNi~~~~~~~~~-----------------------~~~~i~~~~~~~~------~~~~--i~~l~~gldt~vge-~G 1169 (1284)
T 3g5u_A 1122 SIAENIAYGDNSRVV-----------------------SYEEIVRAAKEAN------IHQF--IDSLPDKYNTRVGD-KG 1169 (1284)
T ss_dssp BHHHHHTCCCSSCCC-----------------------CHHHHHHHHHHHT------CHHH--HSSTTTGGGCBCST-TS
T ss_pred cHHHHHhccCCCCCC-----------------------CHHHHHHHHHHhC------cHHH--HHhCccccccccCC-CC
Confidence 999999886421111 0111111111111 1111 23567788999996 45
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCC
Q 002833 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (875)
Q Consensus 341 rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G 420 (875)
..|||||||||+|||+|+.+|++|+|||||+|||+.+...|.+.|++.. .|+|+|++.|... .+ ..||+|++|++|
T Consensus 1170 ~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~--~~~tvi~isH~l~-~i-~~~dri~vl~~G 1245 (1284)
T 3g5u_A 1170 TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR--EGRTCIVIAHRLS-TI-QNADLIVVIQNG 1245 (1284)
T ss_dssp CSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS--SSSCEEEECSCTT-GG-GSCSEEEEEETB
T ss_pred CccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC--CCCEEEEEecCHH-HH-HcCCEEEEEECC
Confidence 6799999999999999999999999999999999999999999999864 4789998887765 44 669999999999
Q ss_pred eEEEecChhhHHH
Q 002833 421 QIVYQGPRDNVLE 433 (875)
Q Consensus 421 ~iv~~Gp~~~~~~ 433 (875)
+++++|+++++.+
T Consensus 1246 ~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1246 KVKEHGTHQQLLA 1258 (1284)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999998864
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.98 E-value=2.3e-32 Score=324.31 Aligned_cols=191 Identities=26% Similarity=0.311 Sum_probs=163.0
Q ss_pred cccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHHHH
Q 002833 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRET 265 (875)
Q Consensus 186 IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~Et 265 (875)
.|+++|+.|++||+++|+||||||||||||+|+|+++|+ +|+|.+ .+.++|++|+....+.+||.|+
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~----------~~~i~~v~Q~~~~~~~~tv~e~ 437 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEW----------DLTVAYKPQYIKAEYEGTVYEL 437 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BSCCCC----------CCCEEEECSSCCCCCSSBHHHH
T ss_pred EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEE----------eeEEEEEecCccCCCCCcHHHH
Confidence 578888889999999999999999999999999999986 899876 2459999999877788999998
Q ss_pred HHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCCCH
Q 002833 266 LDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISG 345 (875)
Q Consensus 266 L~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSG 345 (875)
+...... ... ....++++|+.+||.+.++..+++ |||
T Consensus 438 ~~~~~~~-----------~~~---------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LSG 474 (607)
T 3bk7_A 438 LSKIDSS-----------KLN---------------------------SNFYKTELLKPLGIIDLYDRNVED-----LSG 474 (607)
T ss_dssp HHHHHHH-----------HHH---------------------------CHHHHHHTHHHHTCTTTTTSBGGG-----CCH
T ss_pred HHhhhcc-----------CCC---------------------------HHHHHHHHHHHcCCchHhcCChhh-----CCH
Confidence 8653100 000 012356688999999888888775 999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeC--CeEE
Q 002833 346 GQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE--GQIV 423 (875)
Q Consensus 346 GerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~--G~iv 423 (875)
||||||+||++|+.+|++|+|||||+|||+.++.++.+.|+++++..+.|+|++.|+ ..++..+||+|++|++ |+++
T Consensus 475 Ge~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd-~~~~~~~adrv~vl~~~~g~~~ 553 (607)
T 3bk7_A 475 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD-VLMIDYVSDRLIVFEGEPGRHG 553 (607)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSC-HHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC-HHHHHHhCCEEEEEcCCcceEE
Confidence 999999999999999999999999999999999999999999986668899887654 5678889999999986 8889
Q ss_pred EecChhhHHH
Q 002833 424 YQGPRDNVLE 433 (875)
Q Consensus 424 ~~Gp~~~~~~ 433 (875)
..|+++++..
T Consensus 554 ~~g~p~~~~~ 563 (607)
T 3bk7_A 554 RALPPMGMRE 563 (607)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999988765
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.98 E-value=2.8e-32 Score=320.16 Aligned_cols=191 Identities=26% Similarity=0.309 Sum_probs=161.3
Q ss_pred cccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHHHH
Q 002833 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRET 265 (875)
Q Consensus 186 IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~Et 265 (875)
.|+++|+.|++||+++|+||||||||||||+|+|.++|+ +|+|.+ ...++|++|+....+.+||.|+
T Consensus 301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~~ 367 (538)
T 1yqt_A 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEW----------DLTVAYKPQYIKADYEGTVYEL 367 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BCCCCC----------CCCEEEECSSCCCCCSSBHHHH
T ss_pred EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEE----------CceEEEEecCCcCCCCCcHHHH
Confidence 577888889999999999999999999999999999986 899875 2359999999877788999888
Q ss_pred HHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCCCH
Q 002833 266 LDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISG 345 (875)
Q Consensus 266 L~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSG 345 (875)
+...... ... ....++.+++.+||.+..+..+++ |||
T Consensus 368 ~~~~~~~-----------~~~---------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LSG 404 (538)
T 1yqt_A 368 LSKIDAS-----------KLN---------------------------SNFYKTELLKPLGIIDLYDREVNE-----LSG 404 (538)
T ss_dssp HHHHHHH-----------HHT---------------------------CHHHHHHTTTTTTCGGGTTSBGGG-----CCH
T ss_pred HHhhhcc-----------CCC---------------------------HHHHHHHHHHHcCChhhhcCChhh-----CCH
Confidence 7542100 000 011346678899998888887765 999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeC--CeEE
Q 002833 346 GQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE--GQIV 423 (875)
Q Consensus 346 GerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~--G~iv 423 (875)
||||||+||++|+.+|++|+|||||+|||..++.++.+.|+++++..|.|+|+++| ...++..+||+|++|++ |+++
T Consensus 405 Ge~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsH-d~~~~~~~~drv~vl~~~~~~~~ 483 (538)
T 1yqt_A 405 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH-DVLMIDYVSDRLMVFEGEPGKYG 483 (538)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECS-CHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeC-CHHHHHHhCCEEEEEeCCcceEe
Confidence 99999999999999999999999999999999999999999997655888888765 45688899999999986 8899
Q ss_pred EecChhhHHH
Q 002833 424 YQGPRDNVLE 433 (875)
Q Consensus 424 ~~Gp~~~~~~ 433 (875)
..|+++++..
T Consensus 484 ~~g~~~~~~~ 493 (538)
T 1yqt_A 484 RALPPMGMRE 493 (538)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999988765
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=1.2e-31 Score=314.27 Aligned_cols=192 Identities=22% Similarity=0.258 Sum_probs=159.9
Q ss_pred cccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHHHH
Q 002833 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRET 265 (875)
Q Consensus 186 IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~Et 265 (875)
.|+++|+.|++||+++|+||||||||||||+|+|+++|+ +|+|.++| +.++|++|+....+.+||+|+
T Consensus 283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~~---------~~i~~~~q~~~~~~~~tv~~~ 350 (538)
T 3ozx_A 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEK---------QILSYKPQRIFPNYDGTVQQY 350 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---BCCEESSC---------CCEEEECSSCCCCCSSBHHHH
T ss_pred EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECC---------eeeEeechhcccccCCCHHHH
Confidence 467778889999999999999999999999999999997 99998764 358999998776778999999
Q ss_pred HHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCCCH
Q 002833 266 LDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISG 345 (875)
Q Consensus 266 L~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSG 345 (875)
+.+..... . .. ....++++++.+||.+..+..+++ |||
T Consensus 351 l~~~~~~~-~-------------------~~-----------------~~~~~~~~l~~~~l~~~~~~~~~~-----LSG 388 (538)
T 3ozx_A 351 LENASKDA-L-------------------ST-----------------SSWFFEEVTKRLNLHRLLESNVND-----LSG 388 (538)
T ss_dssp HHHHCSST-T-------------------CT-----------------TSHHHHHTTTTTTGGGCTTSBGGG-----CCH
T ss_pred HHHhhhhc-c-------------------ch-----------------hHHHHHHHHHHcCCHHHhcCChhh-----CCH
Confidence 98742100 0 00 011246678889999888888775 999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeC--CeEE
Q 002833 346 GQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE--GQIV 423 (875)
Q Consensus 346 GerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~--G~iv 423 (875)
||||||+||++|+.+|++|+|||||+|||+.++.++.+.|+++++..+.|+|++.| ...++..+||+|++|++ |.+.
T Consensus 389 Gq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsH-dl~~~~~~aDri~vl~~~~~~~~ 467 (538)
T 3ozx_A 389 GELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDH-DLSIHDYIADRIIVFKGEPEKAG 467 (538)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECS-CHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeC-CHHHHHHhCCEEEEEeCCcceec
Confidence 99999999999999999999999999999999999999999998777888888765 55688899999999986 6667
Q ss_pred EecChhhHH
Q 002833 424 YQGPRDNVL 432 (875)
Q Consensus 424 ~~Gp~~~~~ 432 (875)
..+++.++.
T Consensus 468 ~~~~~~~~~ 476 (538)
T 3ozx_A 468 LATSPVTLK 476 (538)
T ss_dssp EECCCEEHH
T ss_pred cCCChHHHH
Confidence 777765543
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.8e-31 Score=316.35 Aligned_cols=193 Identities=24% Similarity=0.234 Sum_probs=161.1
Q ss_pred cccccceeEEEeCC-----eEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCC
Q 002833 184 VRILKDVSGIVKPS-----RMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHG 258 (875)
Q Consensus 184 ~~IL~~vs~~i~pG-----e~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~ 258 (875)
..+++|+|+.+++| |+++|+|||||||||||++|+|+++|+ +|+. + .+..++|++|+.....
T Consensus 360 ~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~---~G~~------~----~~~~i~~~~q~~~~~~ 426 (608)
T 3j16_B 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQD------I----PKLNVSMKPQKIAPKF 426 (608)
T ss_dssp EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS---BCCC------C----CSCCEEEECSSCCCCC
T ss_pred ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC---CCcC------c----cCCcEEEecccccccC
Confidence 45799999999999 789999999999999999999999996 7752 1 2346899999877666
Q ss_pred CCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCc
Q 002833 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (875)
Q Consensus 259 ~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~ 338 (875)
..||+|++....+ +.. . ....++.+++.+||.+.++..+++
T Consensus 427 ~~tv~e~~~~~~~--~~~-------------------~-----------------~~~~~~~~l~~l~l~~~~~~~~~~- 467 (608)
T 3j16_B 427 PGTVRQLFFKKIR--GQF-------------------L-----------------NPQFQTDVVKPLRIDDIIDQEVQH- 467 (608)
T ss_dssp CSBHHHHHHHHCS--STT-------------------T-----------------SHHHHHHTHHHHTSTTTSSSBSSS-
T ss_pred CccHHHHHHHHhh--ccc-------------------c-----------------cHHHHHHHHHHcCChhhhcCChhh-
Confidence 7899998753221 100 0 011245688999999988887765
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEe
Q 002833 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (875)
Q Consensus 339 ~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~ 418 (875)
|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|+++++..|.|+|+++| ...++..+||+|++|+
T Consensus 468 ----LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtH-dl~~~~~~aDrvivl~ 542 (608)
T 3j16_B 468 ----LSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEH-DFIMATYLADKVIVFE 542 (608)
T ss_dssp ----CCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECS-CHHHHHHHCSEEEECE
T ss_pred ----CCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeC-CHHHHHHhCCEEEEEe
Confidence 99999999999999999999999999999999999999999999997656889988765 4568889999999999
Q ss_pred C--CeEEEecChhhHHH
Q 002833 419 E--GQIVYQGPRDNVLE 433 (875)
Q Consensus 419 ~--G~iv~~Gp~~~~~~ 433 (875)
+ |+++..|+++++..
T Consensus 543 ~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 543 GIPSKNAHARAPESLLT 559 (608)
T ss_dssp EETTTEEECCCCEEHHH
T ss_pred CCCCeEEecCChHHHhh
Confidence 6 99999999988764
No 52
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.97 E-value=2.1e-30 Score=312.46 Aligned_cols=215 Identities=23% Similarity=0.271 Sum_probs=140.1
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHH---------------------HHHhcCcCCCCC----CccEEEECCEe
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLM---------------------LALAGKLGKDLR----ASGKITYCGHE 237 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLL---------------------k~LaG~l~~~~~----~sG~I~~nG~~ 237 (875)
..++|+|||++|++||+++|+||||||||||| ++++|+..|+.. ..|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 45699999999999999999999999999998 888888777521 25677787766
Q ss_pred CCCCccCceEEEEecCCC-------------------CCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCCh
Q 002833 238 LNEFVPQRTCAYISQHDL-------------------HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298 (875)
Q Consensus 238 ~~~~~~~~~~~yv~Q~d~-------------------~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~ 298 (875)
.... +++.++|++|... .++.+||.||+.+....... ..+...
T Consensus 110 ~~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~-----------~~~~~~------ 171 (670)
T 3ux8_A 110 TSRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELT-----------EKEAQI------ 171 (670)
T ss_dssp ------CCBHHHHTTCC-------------------------CC------------------------------------
T ss_pred hhcc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccc-----------hhhhHH------
Confidence 5432 2344555555432 24678999999874321100 000000
Q ss_pred hHHHHHHHHHHhcchhhhHHHHHHHHhCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHhcCCc--EEEEeCCCCCCCH
Q 002833 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN--VLYMDEISTGLDS 375 (875)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~-~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~--iLlLDEPTsGLDs 375 (875)
.+... .+.... -.+|+.+||.+. .|..+++ |||||||||+||+||+.+|+ +|||||||+|||+
T Consensus 172 -~~~~~-------~~~~~~-~~~l~~~gL~~~~~~~~~~~-----LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~ 237 (670)
T 3ux8_A 172 -ARLIL-------REIRDR-LGFLQNVGLDYLTLSRSAGT-----LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQ 237 (670)
T ss_dssp ---------------CHHH-HHHHHHTTCTTCCTTCBGGG-----SCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCG
T ss_pred -HHHHH-------HHHHHH-HHHHHHcCCchhhhcCCccc-----CCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCH
Confidence 00000 000111 236889999865 5777765 99999999999999999998 9999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEE------eCCeEEEecChhhHH
Q 002833 376 STTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL------SEGQIVYQGPRDNVL 432 (875)
Q Consensus 376 ~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL------~~G~iv~~Gp~~~~~ 432 (875)
.++.++++.|+++.+ .|.|+|++.|+.. ....||+|++| ++|++++.|+++++.
T Consensus 238 ~~~~~l~~~l~~l~~-~g~tvi~vtHd~~--~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 238 RDNDRLIATLKSMRD-LGNTLIVVEHDED--TMLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp GGHHHHHHHHHHHHH-TTCEEEEECCCHH--HHHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHHH-cCCEEEEEeCCHH--HHhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 999999999999976 5889999877643 45679999999 899999999998874
No 53
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.96 E-value=1.5e-30 Score=308.85 Aligned_cols=183 Identities=24% Similarity=0.264 Sum_probs=148.9
Q ss_pred ccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEE---------EECCEeCCCC-----ccCceEEEE
Q 002833 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKI---------TYCGHELNEF-----VPQRTCAYI 250 (875)
Q Consensus 185 ~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I---------~~nG~~~~~~-----~~~~~~~yv 250 (875)
.+|+|+| .|++||+++|+||||||||||||+|+|+++|+ +|++ .++|.++... ..+..++++
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~---~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~ 181 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN---LCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVK 181 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC---TTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEE
T ss_pred eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCC---CCccccccchhhheeCCEehhhhhhhhhhhhcceEEe
Confidence 4899999 99999999999999999999999999999987 7885 4566554221 112357888
Q ss_pred ecCCCCCC---CCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCC
Q 002833 251 SQHDLHHG---EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGL 327 (875)
Q Consensus 251 ~Q~d~~~~---~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL 327 (875)
+|.....+ ..||.|++.... ....++++|+.+||
T Consensus 182 ~q~~~~~~~~~~~tv~e~l~~~~-------------------------------------------~~~~~~~~L~~lgL 218 (607)
T 3bk7_A 182 PQYVDLLPKAVKGKVRELLKKVD-------------------------------------------EVGKFEEVVKELEL 218 (607)
T ss_dssp CSCGGGGGGTCCSBHHHHHHHTC-------------------------------------------CSSCHHHHHHHTTC
T ss_pred echhhhchhhccccHHHHhhhhH-------------------------------------------HHHHHHHHHHHcCC
Confidence 88643322 238998885310 01235678999999
Q ss_pred CccccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhH
Q 002833 328 DICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPET 407 (875)
Q Consensus 328 ~~~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei 407 (875)
++..|..+++ |||||||||+||+||+.+|++|||||||+|||+.++.++.+.|+++.+ .|.|+|++.|+ ...+
T Consensus 219 ~~~~~~~~~~-----LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvIivsHd-l~~~ 291 (607)
T 3bk7_A 219 ENVLDRELHQ-----LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-EGKAVLVVEHD-LAVL 291 (607)
T ss_dssp TTGGGSBGGG-----CCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSC-HHHH
T ss_pred CchhCCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEecC-hHHH
Confidence 9988888775 999999999999999999999999999999999999999999999986 48899888765 5577
Q ss_pred HhhcCeEEEEeCCe
Q 002833 408 YDLFDDIILLSEGQ 421 (875)
Q Consensus 408 ~~lfD~vilL~~G~ 421 (875)
..++|+|++|++|.
T Consensus 292 ~~~adri~vl~~~~ 305 (607)
T 3bk7_A 292 DYLSDVIHVVYGEP 305 (607)
T ss_dssp HHHCSEEEEEESCT
T ss_pred HhhCCEEEEECCCc
Confidence 88999999998653
No 54
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.96 E-value=1.5e-30 Score=305.46 Aligned_cols=182 Identities=22% Similarity=0.241 Sum_probs=147.8
Q ss_pred ccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEE---------EECCEeCCCC-----ccCceEEEE
Q 002833 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKI---------TYCGHELNEF-----VPQRTCAYI 250 (875)
Q Consensus 185 ~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I---------~~nG~~~~~~-----~~~~~~~yv 250 (875)
.+|+||| .|++||+++|+||||||||||||+|+|.++|+ +|++ .++|.++... ..+..++++
T Consensus 36 ~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~---~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 111 (538)
T 1yqt_A 36 FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN---LCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVK 111 (538)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEE
T ss_pred ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhh
Confidence 4899999 99999999999999999999999999999986 7885 4566544211 112357888
Q ss_pred ecCCCCCCC---CCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCC
Q 002833 251 SQHDLHHGE---MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGL 327 (875)
Q Consensus 251 ~Q~d~~~~~---lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL 327 (875)
+|....++. .||.|++.... ....++++|+.+||
T Consensus 112 ~q~~~~~~~~~~~~v~e~~~~~~-------------------------------------------~~~~~~~~l~~lgl 148 (538)
T 1yqt_A 112 PQYVDLIPKAVKGKVIELLKKAD-------------------------------------------ETGKLEEVVKALEL 148 (538)
T ss_dssp CSCGGGSGGGCCSBHHHHHHHHC-------------------------------------------SSSCHHHHHHHTTC
T ss_pred hhhhhhcchhhhccHHHHHhhhh-------------------------------------------HHHHHHHHHHHcCC
Confidence 887443332 37888764210 01235678999999
Q ss_pred CccccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhH
Q 002833 328 DICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPET 407 (875)
Q Consensus 328 ~~~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei 407 (875)
.+..+..+++ |||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|+++.+ .|+|+|++.|+ ..++
T Consensus 149 ~~~~~~~~~~-----LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvi~vsHd-~~~~ 221 (538)
T 1yqt_A 149 ENVLEREIQH-----LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE-EGKSVLVVEHD-LAVL 221 (538)
T ss_dssp TTTTTSBGGG-----CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSC-HHHH
T ss_pred ChhhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCC-HHHH
Confidence 9888887765 999999999999999999999999999999999999999999999986 58898887765 5688
Q ss_pred HhhcCeEEEEeCC
Q 002833 408 YDLFDDIILLSEG 420 (875)
Q Consensus 408 ~~lfD~vilL~~G 420 (875)
.++||+|++|++|
T Consensus 222 ~~~~dri~vl~~~ 234 (538)
T 1yqt_A 222 DYLSDIIHVVYGE 234 (538)
T ss_dssp HHHCSEEEEEEEE
T ss_pred HHhCCEEEEEcCc
Confidence 8899999999865
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.96 E-value=3.5e-29 Score=307.06 Aligned_cols=186 Identities=21% Similarity=0.285 Sum_probs=151.9
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCC-CCCCCCC
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHD-LHHGEMT 261 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d-~~~~~lT 261 (875)
++.+|+|+|+.|++|++++|+||||||||||||+|+| |+| +|.+... ...++|++|+. ..++.+|
T Consensus 447 ~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~---~~~~~~v~q~~~~~~~~lt 512 (986)
T 2iw3_A 447 AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQE---ECRTVYVEHDIDGTHSDTS 512 (986)
T ss_dssp TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTT---TSCEEETTCCCCCCCTTSB
T ss_pred CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CCCcccc---ceeEEEEcccccccccCCc
Confidence 3569999999999999999999999999999999995 222 3433211 12368999874 6788999
Q ss_pred HHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCC-ccccccccCccC
Q 002833 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVGDEMR 340 (875)
Q Consensus 262 V~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~~~~ 340 (875)
|.|++.+ ...+. ...++.+|+.+||. +..+..+++
T Consensus 513 v~e~l~~--~~~~~---------------------------------------~~~v~~~L~~lgL~~~~~~~~~~~--- 548 (986)
T 2iw3_A 513 VLDFVFE--SGVGT---------------------------------------KEAIKDKLIEFGFTDEMIAMPISA--- 548 (986)
T ss_dssp HHHHHHT--TCSSC---------------------------------------HHHHHHHHHHTTCCHHHHHSBGGG---
T ss_pred HHHHHHH--hhcCH---------------------------------------HHHHHHHHHHcCCChhhhcCCccc---
Confidence 9999975 11100 01246688999995 677777765
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCC
Q 002833 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (875)
Q Consensus 341 rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G 420 (875)
|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++ .|+|+|++.|+ ..++.++||+|++|++|
T Consensus 549 --LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g~tvIivSHd-l~~l~~~adrii~L~~G 621 (986)
T 2iw3_A 549 --LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----CGITSITISHD-SVFLDNVCEYIINYEGL 621 (986)
T ss_dssp --CCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----SCSEEEEECSC-HHHHHHHCSEEEEEETT
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh----CCCEEEEEECC-HHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999988 37888887654 56788899999999999
Q ss_pred eEE-EecChhhHHH
Q 002833 421 QIV-YQGPRDNVLE 433 (875)
Q Consensus 421 ~iv-~~Gp~~~~~~ 433 (875)
+++ +.|+.+++..
T Consensus 622 ~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 622 KLRKYKGNFTEFVK 635 (986)
T ss_dssp EEEEEESCHHHHHH
T ss_pred eeecCCCCHHHHHh
Confidence 997 7899987654
No 56
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.96 E-value=4.6e-29 Score=300.84 Aligned_cols=106 Identities=26% Similarity=0.271 Sum_probs=91.0
Q ss_pred HHHHHHhCCCc-cccccccCccCCCCCHHHHHHHHHHHHHhcCC---cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCc
Q 002833 319 DYVLKILGLDI-CADTMVGDEMRRGISGGQKKRVTTGEMLVGTA---NVLYMDEISTGLDSSTTFQICKFLKQMVHILDV 394 (875)
Q Consensus 319 ~~iL~~lgL~~-~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p---~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~ 394 (875)
.+.++.+||.. ..+..++ .|||||||||+|||+|+.+| ++|+|||||+|||+.++.++++.|+++++ .|.
T Consensus 524 ~~~l~~~~l~~~~~~~~~~-----~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~-~g~ 597 (670)
T 3ux8_A 524 LETLYDVGLGYMKLGQPAT-----TLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGD 597 (670)
T ss_dssp HHHHHHTTCTTSBTTCCGG-----GCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTC
T ss_pred HHHHHHcCCchhhccCCch-----hCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCC
Confidence 45677889864 3455555 59999999999999999886 59999999999999999999999999986 489
Q ss_pred EEEEeecCCchhHHhhcCeEEEE------eCCeEEEecChhhHH
Q 002833 395 TMIVALLQPAPETYDLFDDIILL------SEGQIVYQGPRDNVL 432 (875)
Q Consensus 395 tviisi~q~~~ei~~lfD~vilL------~~G~iv~~Gp~~~~~ 432 (875)
|+|++.|+.. . ...||+|++| ++|++++.|+++++.
T Consensus 598 tvi~vtHd~~-~-~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~ 639 (670)
T 3ux8_A 598 TVLVIEHNLD-V-IKTADYIIDLGPEGGDRGGQIVAVGTPEEVA 639 (670)
T ss_dssp EEEEECCCHH-H-HTTCSEEEEEESSSGGGCCEEEEEECHHHHH
T ss_pred EEEEEeCCHH-H-HHhCCEEEEecCCcCCCCCEEEEecCHHHHH
Confidence 9999877653 4 4679999999 899999999999884
No 57
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.96 E-value=1.5e-29 Score=310.43 Aligned_cols=232 Identities=24% Similarity=0.296 Sum_probs=160.3
Q ss_pred HhhhccccCCccc-ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEE
Q 002833 170 ALGLLHLVPSKKR-SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCA 248 (875)
Q Consensus 170 ~l~~~~~~~~~~~-~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~ 248 (875)
++.+.++...+.+ .+++|+|||+.|++|++++|+||||||||||||+|+|+++|+ +|+|.++|. ..++
T Consensus 671 mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~---sG~I~~~~~--------~~I~ 739 (986)
T 2iw3_A 671 IVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT---SGEVYTHEN--------CRIA 739 (986)
T ss_dssp EEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCS---EEEEEECTT--------CCEE
T ss_pred eEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEEcCc--------cceE
Confidence 3455555555533 367999999999999999999999999999999999999997 999999862 2489
Q ss_pred EEecCCCC----CCCCCHHHHHHHhhhhcCCcchhHHH------------------------------------------
Q 002833 249 YISQHDLH----HGEMTVRETLDFSGRCLGVGTRYELL------------------------------------------ 282 (875)
Q Consensus 249 yv~Q~d~~----~~~lTV~EtL~f~a~~~~~~~~~~~~------------------------------------------ 282 (875)
|++|+..+ ..+.|++|++.+.... + .....+.
T Consensus 740 yv~Q~~~~~l~~~~~~t~~e~i~~~~q~-g-~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~ 817 (986)
T 2iw3_A 740 YIKQHAFAHIESHLDKTPSEYIQWRFQT-G-EDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEY 817 (986)
T ss_dssp EECHHHHHHGGGCTTSCHHHHHHHHTTT-S-SCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEE
T ss_pred eeccchhhhhhcccccCHHHHHHHHhhc-c-chhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchh
Confidence 99998532 2357999998764211 0 0000000
Q ss_pred -----------------HHHHHHHHhcCC-CCChhH-HHHHH---------HHHH--hcchhhhHHHHHHHHhCCCcc--
Q 002833 283 -----------------AELSRREKQAGI-KPDPEI-DAFMK---------AVAV--AGQETSLVTDYVLKILGLDIC-- 330 (875)
Q Consensus 283 -----------------~~l~~~e~~~~~-~~~~~~-~~~~~---------~~~~--~~~~~~~~~~~iL~~lgL~~~-- 330 (875)
..++..+ ++ .+..+. ..+.+ +... ........++++|+.+||...
T Consensus 818 e~~~sv~ENi~l~~~~~~~lt~~e---n~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~ 894 (986)
T 2iw3_A 818 ECSFLLGENIGMKSERWVPMMSVD---NAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIV 894 (986)
T ss_dssp EEEEEEEESTTSTTCEEEECCGGG---CEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHH
T ss_pred hhhhhhhhhhhcccccccccchhh---hhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhh
Confidence 0000000 00 000000 00000 0000 011123457889999999753
Q ss_pred ccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhh
Q 002833 331 ADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL 410 (875)
Q Consensus 331 ~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~l 410 (875)
.+..++ +|||||||||+||++|+.+|++|+|||||+|||..+...+.+.|+++ +.|+|++.|+ ...+.++
T Consensus 895 ~~~~~~-----~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~----g~tVIiISHD-~e~v~~l 964 (986)
T 2iw3_A 895 SHSRIR-----GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF----EGGVIIITHS-AEFTKNL 964 (986)
T ss_dssp HHSCGG-----GCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC----SSEEEEECSC-HHHHTTT
T ss_pred cCCCcc-----ccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh----CCEEEEEECC-HHHHHHh
Confidence 466665 49999999999999999999999999999999999999999988764 5688887655 5577889
Q ss_pred cCeEEEEeCCeEEEecC
Q 002833 411 FDDIILLSEGQIVYQGP 427 (875)
Q Consensus 411 fD~vilL~~G~iv~~Gp 427 (875)
||++++|.+|+++..|+
T Consensus 965 ~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 965 TEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp CCEEECCBTTBCCC---
T ss_pred CCEEEEEECCEEEEeCC
Confidence 99999999999987774
No 58
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.95 E-value=1.7e-28 Score=287.62 Aligned_cols=176 Identities=23% Similarity=0.219 Sum_probs=136.5
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEE-----------EECCEeCCCCc-----cCceEEEEecCCCCC
Q 002833 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKI-----------TYCGHELNEFV-----PQRTCAYISQHDLHH 257 (875)
Q Consensus 194 i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I-----------~~nG~~~~~~~-----~~~~~~yv~Q~d~~~ 257 (875)
+++||+++|+||||||||||||+|+|.++|+ +|+| .++|.++.... ....+....|.....
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~---~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~ 98 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPN---FGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYA 98 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCC---TTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGG
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhh
Confidence 4699999999999999999999999999997 8988 57776553210 112234444432221
Q ss_pred ---CCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCcccccc
Q 002833 258 ---GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTM 334 (875)
Q Consensus 258 ---~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 334 (875)
...||+|++... +....++++++.+||.+..|+.
T Consensus 99 ~~~~~~~v~~~l~~~-------------------------------------------~~~~~~~~~l~~l~l~~~~~~~ 135 (538)
T 3ozx_A 99 SKFLKGTVNEILTKI-------------------------------------------DERGKKDEVKELLNMTNLWNKD 135 (538)
T ss_dssp GTTCCSBHHHHHHHH-------------------------------------------CCSSCHHHHHHHTTCGGGTTSB
T ss_pred hhhccCcHHHHhhcc-------------------------------------------hhHHHHHHHHHHcCCchhhcCC
Confidence 223676654311 0112356789999999988888
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeE
Q 002833 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (875)
Q Consensus 335 vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~v 414 (875)
+++ |||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++.+ ++|+|++.|+ ..++..+||+|
T Consensus 136 ~~~-----LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~--g~tii~vsHd-l~~~~~~~d~i 207 (538)
T 3ozx_A 136 ANI-----LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK--NKYVIVVDHD-LIVLDYLTDLI 207 (538)
T ss_dssp GGG-----CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT--TSEEEEECSC-HHHHHHHCSEE
T ss_pred hhh-----CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC--CCEEEEEEeC-hHHHHhhCCEE
Confidence 775 999999999999999999999999999999999999999999999964 7888887655 56888999999
Q ss_pred EEEeCCeEE
Q 002833 415 ILLSEGQIV 423 (875)
Q Consensus 415 ilL~~G~iv 423 (875)
++|++|..+
T Consensus 208 ~vl~~~~~~ 216 (538)
T 3ozx_A 208 HIIYGESSV 216 (538)
T ss_dssp EEEEEETTT
T ss_pred EEecCCccc
Confidence 999876543
No 59
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.94 E-value=5e-28 Score=286.86 Aligned_cols=194 Identities=22% Similarity=0.259 Sum_probs=139.2
Q ss_pred CcccccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEE-----------ECCEeCCCCcc---C
Q 002833 179 SKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKIT-----------YCGHELNEFVP---Q 244 (875)
Q Consensus 179 ~~~~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~-----------~nG~~~~~~~~---~ 244 (875)
.+......|++++ .+++||+++|+||||||||||||+|+|+++|+ +|+|. +.|.++..+.. .
T Consensus 86 ~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~---~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~ 161 (608)
T 3j16_B 86 RYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPN---LGRFDDPPEWQEIIKYFRGSELQNYFTKMLE 161 (608)
T ss_dssp ECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSSCHHHHHHHTTTSTHHHHHHHHHH
T ss_pred EECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCC---CceEecccchhhhhheecChhhhhhhhHHHH
Confidence 3333334677777 58999999999999999999999999999997 88872 22222111000 0
Q ss_pred c--eEEEEecCCCCC------CCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhh
Q 002833 245 R--TCAYISQHDLHH------GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSL 316 (875)
Q Consensus 245 ~--~~~yv~Q~d~~~------~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (875)
+ ...+.+|....+ +..+|.+.+.. .......
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~-----------------------------------------~~~~~~~ 200 (608)
T 3j16_B 162 DDIKAIIKPQYVDNIPRAIKGPVQKVGELLKL-----------------------------------------RMEKSPE 200 (608)
T ss_dssp TSCCCEEECCCTTTHHHHCSSSSSHHHHHHHH-----------------------------------------HCCSCHH
T ss_pred HhhhhhhchhhhhhhhhhhcchhhHHHHHHhh-----------------------------------------hhhhHHH
Confidence 0 112222221100 01122222211 0111223
Q ss_pred HHHHHHHHhCCCccccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q 002833 317 VTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTM 396 (875)
Q Consensus 317 ~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tv 396 (875)
.++++++.+||.+..|+.+++ |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|.|+
T Consensus 201 ~~~~~l~~~gl~~~~~~~~~~-----LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~-~g~tv 274 (608)
T 3j16_B 201 DVKRYIKILQLENVLKRDIEK-----LSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLA-PTKYV 274 (608)
T ss_dssp HHHHHHHHHTCTGGGGSCTTT-----CCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGT-TTCEE
T ss_pred HHHHHHHHcCCcchhCCChHH-----CCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHh-CCCEE
Confidence 467899999999998888775 999999999999999999999999999999999999999999999976 47888
Q ss_pred EEeecCCchhHHhhcCeEEEEeCCeEEE
Q 002833 397 IVALLQPAPETYDLFDDIILLSEGQIVY 424 (875)
Q Consensus 397 iisi~q~~~ei~~lfD~vilL~~G~iv~ 424 (875)
|++.| ...++..++|+|++|++|..+|
T Consensus 275 i~vtH-dl~~~~~~~drv~vl~~~~~~~ 301 (608)
T 3j16_B 275 ICVEH-DLSVLDYLSDFVCIIYGVPSVY 301 (608)
T ss_dssp EEECS-CHHHHHHHCSEEEEEESCTTTE
T ss_pred EEEeC-CHHHHHHhCCEEEEEeCCcccc
Confidence 88754 5668889999999999876544
No 60
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.94 E-value=1.2e-25 Score=275.77 Aligned_cols=108 Identities=25% Similarity=0.295 Sum_probs=91.6
Q ss_pred HHHHHHHHhCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHhcCC---cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhC
Q 002833 317 VTDYVLKILGLDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLVGTA---NVLYMDEISTGLDSSTTFQICKFLKQMVHIL 392 (875)
Q Consensus 317 ~~~~iL~~lgL~~~-~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p---~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~ 392 (875)
.+.++|+.+||... .+. ....|||||||||.||++|+.+| ++|+|||||+|||+.+..++++.|+++++ .
T Consensus 784 ~~~~~L~~vGL~~~~lgq-----~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~-~ 857 (916)
T 3pih_A 784 RTLQVLHDVGLGYVKLGQ-----PATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVD-R 857 (916)
T ss_dssp HHHHHHHHTTGGGSBTTC-----CSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHcCCchhhccC-----CccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-c
Confidence 34668899999653 233 34469999999999999999865 79999999999999999999999999986 4
Q ss_pred CcEEEEeecCCchhHHhhcCeEEEE------eCCeEEEecChhhHH
Q 002833 393 DVTMIVALLQPAPETYDLFDDIILL------SEGQIVYQGPRDNVL 432 (875)
Q Consensus 393 ~~tviisi~q~~~ei~~lfD~vilL------~~G~iv~~Gp~~~~~ 432 (875)
|.|+|++.|+. . +...||+|++| ++|+|+++|+++++.
T Consensus 858 G~TVIvI~HdL-~-~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 858 GNTVIVIEHNL-D-VIKNADHIIDLGPEGGKEGGYIVATGTPEEIA 901 (916)
T ss_dssp TCEEEEECCCH-H-HHTTCSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred CCEEEEEeCCH-H-HHHhCCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence 88999887665 3 44669999999 899999999999985
No 61
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.94 E-value=1.9e-26 Score=280.90 Aligned_cols=106 Identities=26% Similarity=0.271 Sum_probs=92.7
Q ss_pred HHHHHHhCCCc-cccccccCccCCCCCHHHHHHHHHHHHHhcCC---cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCc
Q 002833 319 DYVLKILGLDI-CADTMVGDEMRRGISGGQKKRVTTGEMLVGTA---NVLYMDEISTGLDSSTTFQICKFLKQMVHILDV 394 (875)
Q Consensus 319 ~~iL~~lgL~~-~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p---~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~ 394 (875)
.++|+.+||.. ..+..++ .|||||||||+||++|+.+| ++|+|||||+|||+.+..++++.|+++++ .|.
T Consensus 826 ~~~L~~~gL~~~~l~~~~~-----~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~ 899 (972)
T 2r6f_A 826 LETLYDVGLGYMKLGQPAT-----TLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGD 899 (972)
T ss_dssp HHHHHHTTCSSSBTTCCGG-----GCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTC
T ss_pred HHHHHHcCCCcccccCchh-----hCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCC
Confidence 56889999987 5666665 49999999999999999764 99999999999999999999999999986 588
Q ss_pred EEEEeecCCchhHHhhcCeEEEE------eCCeEEEecChhhHH
Q 002833 395 TMIVALLQPAPETYDLFDDIILL------SEGQIVYQGPRDNVL 432 (875)
Q Consensus 395 tviisi~q~~~ei~~lfD~vilL------~~G~iv~~Gp~~~~~ 432 (875)
|+|++.|+. .++ ..||+|++| ++|++++.|+++++.
T Consensus 900 TVIvisHdl-~~i-~~aDrIivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 900 TVLVIEHNL-DVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp EEEEECCCH-HHH-TTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred EEEEEcCCH-HHH-HhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence 999887664 344 789999999 789999999998874
No 62
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.93 E-value=5e-26 Score=276.89 Aligned_cols=108 Identities=22% Similarity=0.274 Sum_probs=93.8
Q ss_pred HHHHHHHHhCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHhcC---CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhC
Q 002833 317 VTDYVLKILGLDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLVGT---ANVLYMDEISTGLDSSTTFQICKFLKQMVHIL 392 (875)
Q Consensus 317 ~~~~iL~~lgL~~~-~dt~vg~~~~rgLSGGerkRVsIA~aLv~~---p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~ 392 (875)
.+..+|+.+||... .+..++ .|||||||||.||++|+.+ |++|+|||||+|||..+..+|.+.|+++++ .
T Consensus 709 ~~~~~L~~~gL~~~~l~~~~~-----~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~ 782 (842)
T 2vf7_A 709 RALDTLREVGLGYLRLGQPAT-----ELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD-A 782 (842)
T ss_dssp HHHHHHHHTTCTTSBTTCCGG-----GCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHcCCCcccccCCcc-----cCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-C
Confidence 35678999999873 465555 5999999999999999996 799999999999999999999999999986 4
Q ss_pred CcEEEEeecCCchhHHhhcCeEEEE------eCCeEEEecChhhHH
Q 002833 393 DVTMIVALLQPAPETYDLFDDIILL------SEGQIVYQGPRDNVL 432 (875)
Q Consensus 393 ~~tviisi~q~~~ei~~lfD~vilL------~~G~iv~~Gp~~~~~ 432 (875)
|.|+|++.|+ .+++ +.||+|++| ++|++++.|+++++.
T Consensus 783 G~tVIvisHd-l~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 783 GNTVIAVEHK-MQVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp TCEEEEECCC-HHHH-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred CCEEEEEcCC-HHHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 8899887765 4456 889999999 799999999998873
No 63
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1e-28 Score=284.18 Aligned_cols=184 Identities=12% Similarity=0.066 Sum_probs=145.6
Q ss_pred cceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCcc-E-EEECCEeCCCCccCceEEEEecCCC---CCCCCCH
Q 002833 188 KDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASG-K-ITYCGHELNEFVPQRTCAYISQHDL---HHGEMTV 262 (875)
Q Consensus 188 ~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG-~-I~~nG~~~~~~~~~~~~~yv~Q~d~---~~~~lTV 262 (875)
.++|+.+++|++++|+||||||||||+|+|+|+..|+ +| + |.++|. +++.++|++|+.. +.+.+||
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~---~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv 199 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKF---NAYQPLYINLD------PQQPIFTVPGCISATPISDILDA 199 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHH---HCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccccc---CCceeEEEcCC------ccCCeeeeccchhhcccccccch
Confidence 3799999999999999999999999999999999886 89 9 999982 3567899999874 4566899
Q ss_pred HHHHHHhhhhc-CCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCC
Q 002833 263 RETLDFSGRCL-GVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (875)
Q Consensus 263 ~EtL~f~a~~~-~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (875)
+||+ |+.... +.. ....+..+++.+||.+..+ + +
T Consensus 200 ~eni-~~~~~~~~~~-------------------------------------~~~~~~~ll~~~gl~~~~~--~-----~ 234 (460)
T 2npi_A 200 QLPT-WGQSLTSGAT-------------------------------------LLHNKQPMVKNFGLERINE--N-----K 234 (460)
T ss_dssp TCTT-CSCBCBSSCC-------------------------------------SSCCBCCEECCCCSSSGGG--C-----H
T ss_pred hhhh-cccccccCcc-------------------------------------hHHHHHHHHHHhCCCcccc--h-----h
Confidence 9998 764321 100 0001223566788887665 3 3
Q ss_pred CCCHHHHHHHHHHHH--HhcCCcE----EEEeC-CCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCch-----hHHh
Q 002833 342 GISGGQKKRVTTGEM--LVGTANV----LYMDE-ISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAP-----ETYD 409 (875)
Q Consensus 342 gLSGGerkRVsIA~a--Lv~~p~i----LlLDE-PTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~-----ei~~ 409 (875)
.|||||||||+||++ |+.+|++ |+||| ||+|||+. ...+.+.++ ..+.|+|+++|++.+ ++.+
T Consensus 235 ~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~----~~~~tviiVth~~~~~l~~~~~~~ 309 (460)
T 2npi_A 235 DLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIE----KLNVNIMLVLCSETDPLWEKVKKT 309 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHH----HTTCCEEEEECCSSCTHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHH----HhCCCEEEEEccCchhhhHHHHHH
Confidence 599999999999999 9999999 99999 99999999 444444443 347788888887662 5558
Q ss_pred hcCe-----EEEEe-CCeEEEecChhhH
Q 002833 410 LFDD-----IILLS-EGQIVYQGPRDNV 431 (875)
Q Consensus 410 lfD~-----vilL~-~G~iv~~Gp~~~~ 431 (875)
++|+ |++|+ +|+++ .|+++++
T Consensus 310 ~~dr~~~~~vi~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 310 FGPELGNNNIFFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp HHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred hcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence 9999 99999 99999 9998765
No 64
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.93 E-value=7.6e-26 Score=276.54 Aligned_cols=108 Identities=26% Similarity=0.260 Sum_probs=93.1
Q ss_pred HHHHHHHhCCCc-cccccccCccCCCCCHHHHHHHHHHHHHhcCC---cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCC
Q 002833 318 TDYVLKILGLDI-CADTMVGDEMRRGISGGQKKRVTTGEMLVGTA---NVLYMDEISTGLDSSTTFQICKFLKQMVHILD 393 (875)
Q Consensus 318 ~~~iL~~lgL~~-~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p---~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~ 393 (875)
...+|+.+||.. ..+..++ .|||||||||+||++|+.+| ++|+|||||+|||+.+..++.+.|+++++ .|
T Consensus 843 ~~~~L~~lgL~~~~l~~~~~-----~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G 916 (993)
T 2ygr_A 843 YLRTLVDVGLGYVRLGQPAP-----TLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVD-KG 916 (993)
T ss_dssp HHHHHHHTTGGGSBTTCCGG-----GSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHcCCCcccccCccc-----cCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CC
Confidence 356889999986 5566655 49999999999999999864 99999999999999999999999999986 48
Q ss_pred cEEEEeecCCchhHHhhcCeEEEE------eCCeEEEecChhhHHH
Q 002833 394 VTMIVALLQPAPETYDLFDDIILL------SEGQIVYQGPRDNVLE 433 (875)
Q Consensus 394 ~tviisi~q~~~ei~~lfD~vilL------~~G~iv~~Gp~~~~~~ 433 (875)
.|+|++.|+. .++ +.||+|++| ++|++++.|+++++..
T Consensus 917 ~TVIvisHdl-~~i-~~aDrIivL~p~gg~~~G~Iv~~G~~~el~~ 960 (993)
T 2ygr_A 917 NTVIVIEHNL-DVI-KTSDWIIDLGPEGGAGGGTVVAQGTPEDVAA 960 (993)
T ss_dssp CEEEEECCCH-HHH-TTCSEEEEEESSSTTSCSEEEEEECHHHHHH
T ss_pred CEEEEEcCCH-HHH-HhCCEEEEECCCcCCCCCEEEEecCHHHHHh
Confidence 8999887664 344 789999999 7899999999998753
No 65
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.92 E-value=9e-25 Score=248.15 Aligned_cols=237 Identities=15% Similarity=0.127 Sum_probs=150.4
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC-----------------------------------CCC
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD-----------------------------------LRA 227 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~-----------------------------------~~~ 227 (875)
+..+|+++++.+.+| +++|+|||||||||||++|+++..+. ..-
T Consensus 47 nf~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~ 125 (415)
T 4aby_A 47 NLATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAG 125 (415)
T ss_dssp EETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTS
T ss_pred cccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCC
Confidence 346899999999999 99999999999999999997776420 012
Q ss_pred ccEEEECCEeCCCCcc----CceEEEEecCCCCCCCCCHHHHHHHhhhhcCCc-c----hhHHHHHHHHHHHhcCCCCCh
Q 002833 228 SGKITYCGHELNEFVP----QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVG-T----RYELLAELSRREKQAGIKPDP 298 (875)
Q Consensus 228 sG~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~-~----~~~~~~~l~~~e~~~~~~~~~ 298 (875)
+|+|.+||++++.... ...+++++|++.++.. +..+...|--...... . .+.......+. ...-.+...
T Consensus 126 ~~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~-~~~l~~~~~ 203 (415)
T 4aby_A 126 RGAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSR-LERLQASES 203 (415)
T ss_dssp CEEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH-HHHC-----
T ss_pred ceEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH-HHHHHhhhh
Confidence 7889999999764211 2348999998765543 5555444432211000 0 00000000000 000000000
Q ss_pred -----------hHHHHHHHHH-----------HhcchhhhHHHHHHHHhCCCccc----------------cc---cccC
Q 002833 299 -----------EIDAFMKAVA-----------VAGQETSLVTDYVLKILGLDICA----------------DT---MVGD 337 (875)
Q Consensus 299 -----------~~~~~~~~~~-----------~~~~~~~~~~~~iL~~lgL~~~~----------------dt---~vg~ 337 (875)
..+.+.+... .....-...+...++.+++.... +. .+..
T Consensus 204 ~~~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 283 (415)
T 4aby_A 204 SKHPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSA 283 (415)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEES
T ss_pred hhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEc
Confidence 0000000000 00011123345566777765411 00 1110
Q ss_pred ------ccCCC-CCHHHHHHHHHHHHHhcCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHH
Q 002833 338 ------EMRRG-ISGGQKKRVTTGEMLVGTA--NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETY 408 (875)
Q Consensus 338 ------~~~rg-LSGGerkRVsIA~aLv~~p--~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~ 408 (875)
..++. +||||||||+||++|+.+| ++|+|||||+|||+.+...+.+.|+++++ +.|+|++.|++ ++.
T Consensus 284 ~~~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~--~~~vi~itH~~--~~~ 359 (415)
T 4aby_A 284 NPGEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHLA--QIA 359 (415)
T ss_dssp SSSCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSCH--HHH
T ss_pred CCCCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhC--CCEEEEEeCcH--HHH
Confidence 11222 6999999999999999999 99999999999999999999999999973 78999988875 567
Q ss_pred hhcCeEEEE----eCCeEEEec
Q 002833 409 DLFDDIILL----SEGQIVYQG 426 (875)
Q Consensus 409 ~lfD~vilL----~~G~iv~~G 426 (875)
+.||++++| .+|+++...
T Consensus 360 ~~~d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 360 ARAHHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp TTCSEEEEEEEEEETTEEEEEE
T ss_pred hhcCeEEEEEEeccCCceEEEE
Confidence 899999999 999987653
No 66
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.87 E-value=1.5e-24 Score=224.64 Aligned_cols=150 Identities=15% Similarity=0.160 Sum_probs=100.8
Q ss_pred CcccccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCC
Q 002833 179 SKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHG 258 (875)
Q Consensus 179 ~~~~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~ 258 (875)
+..+++.+|+|| ++|++++|+|||||||||||++|+|+ +|+ +|+|............++.++|++|++
T Consensus 8 k~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~---~G~I~~~~~~~~~~~~~~~ig~v~q~~---- 75 (208)
T 3b85_A 8 KTLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQ---SKQVSRIILTRPAVEAGEKLGFLPGTL---- 75 (208)
T ss_dssp CSHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHH---TTSCSEEEEEECSCCTTCCCCSSCC------
T ss_pred CCHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCc---CCeeeeEEecCCchhhhcceEEecCCH----
Confidence 334456799996 89999999999999999999999999 875 788842111111112246799999974
Q ss_pred CCCHHHHH-HHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccC
Q 002833 259 EMTVRETL-DFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (875)
Q Consensus 259 ~lTV~EtL-~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (875)
+||+ .+..... ..+. .. .....++++++. |
T Consensus 76 ----~enl~~~~~~~~---------~~~~------~~------------------~~~~~~~~~l~~-g----------- 106 (208)
T 3b85_A 76 ----NEKIDPYLRPLH---------DALR------DM------------------VEPEVIPKLMEA-G----------- 106 (208)
T ss_dssp --------CTTTHHHH---------HHHT------TT------------------SCTTHHHHHHHT-T-----------
T ss_pred ----HHHHHHHHHHHH---------HHHH------Hh------------------ccHHHHHHHHHh-C-----------
Confidence 6666 3421000 0000 00 001123444443 3
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCC
Q 002833 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQP 403 (875)
Q Consensus 338 ~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~ 403 (875)
+ ||||||+||++|+.+|++|+|||||+| ++..+.+.|+++ + .+.|+| ++|+.
T Consensus 107 -----l--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~-~g~tii-vtHd~ 158 (208)
T 3b85_A 107 -----I--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-G-FGSKMV-VTGDI 158 (208)
T ss_dssp -----S--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-C-TTCEEE-EEEC-
T ss_pred -----C--chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-c-CCCEEE-EECCH
Confidence 2 999999999999999999999999999 888999999988 4 478888 77764
No 67
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.87 E-value=1.2e-21 Score=219.67 Aligned_cols=83 Identities=22% Similarity=0.410 Sum_probs=74.3
Q ss_pred cCCCCCHHHHHHHHHHHHHh------cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcC
Q 002833 339 MRRGISGGQKKRVTTGEMLV------GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (875)
Q Consensus 339 ~~rgLSGGerkRVsIA~aLv------~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD 412 (875)
.+..|||||||||+||++|+ .+|++|||||||+|||+.+...+++.|+++.+ .|.|+|++.|++. ..+.+|
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~tvi~itH~~~--~~~~~d 352 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNKVIVFITHDRE--FSEAFD 352 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSSEEEEEESCHH--HHTTCS
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCC
Confidence 45569999999999999999 79999999999999999999999999999975 5899999887753 478899
Q ss_pred eEEEEeCCeEEE
Q 002833 413 DIILLSEGQIVY 424 (875)
Q Consensus 413 ~vilL~~G~iv~ 424 (875)
++++|++|+++.
T Consensus 353 ~~~~l~~G~i~~ 364 (365)
T 3qf7_A 353 RKLRITGGVVVN 364 (365)
T ss_dssp CEEEEETTEEC-
T ss_pred EEEEEECCEEEe
Confidence 999999999974
No 68
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.86 E-value=3.6e-24 Score=242.56 Aligned_cols=172 Identities=12% Similarity=0.093 Sum_probs=134.4
Q ss_pred cccccceeEEEeCCe--------------------EEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc
Q 002833 184 VRILKDVSGIVKPSR--------------------MTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP 243 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe--------------------~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~ 243 (875)
+.+|++||+.+++|+ +++|+||||||||||+|+|+|+.+|+ +|+|.++|.+..
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~---~GsI~~~g~~~t---- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE---EGAAKTGVVEVT---- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS---TTSCCCCC--------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc---CceEEECCeecc----
Confidence 469999999999999 99999999999999999999999986 999999997653
Q ss_pred CceEEEEecCCCCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHH
Q 002833 244 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK 323 (875)
Q Consensus 244 ~~~~~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~ 323 (875)
+ .+|++|++ .++.+||.||+.++.. +..++++++
T Consensus 109 ~--~~~v~q~~-~~~~ltv~D~~g~~~~-------------------------------------------~~~~~~~L~ 142 (413)
T 1tq4_A 109 M--ERHPYKHP-NIPNVVFWDLPGIGST-------------------------------------------NFPPDTYLE 142 (413)
T ss_dssp C--CCEEEECS-SCTTEEEEECCCGGGS-------------------------------------------SCCHHHHHH
T ss_pred e--eEEecccc-ccCCeeehHhhcccch-------------------------------------------HHHHHHHHH
Confidence 1 27899974 5788999998755310 012456788
Q ss_pred HhCCCccccccccCccCCCCCHH--HHHHHHHHHHHhc----------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-
Q 002833 324 ILGLDICADTMVGDEMRRGISGG--QKKRVTTGEMLVG----------TANVLYMDEISTGLDSSTTFQICKFLKQMVH- 390 (875)
Q Consensus 324 ~lgL~~~~dt~vg~~~~rgLSGG--erkRVsIA~aLv~----------~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~- 390 (875)
.++|.+... .+ . +||| ||||+.||++|+. +|++++|||||+|||+.++.++.+.|+++.+
T Consensus 143 ~~~L~~~~~-~~-----~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~ 215 (413)
T 1tq4_A 143 KMKFYEYDF-FI-----I-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVN 215 (413)
T ss_dssp HTTGGGCSE-EE-----E-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHH
T ss_pred HcCCCccCC-eE-----E-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHH
Confidence 888876532 22 2 9999 9999999999999 9999999999999999999999999999852
Q ss_pred ---hC----CcEEEEeecCCch-hHHhhcCeEE
Q 002833 391 ---IL----DVTMIVALLQPAP-ETYDLFDDII 415 (875)
Q Consensus 391 ---~~----~~tviisi~q~~~-ei~~lfD~vi 415 (875)
.. ..+++++.|.... .+-+++|+|.
T Consensus 216 ~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 216 TFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 22 2456677665442 3666677664
No 69
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.86 E-value=6.9e-22 Score=217.74 Aligned_cols=87 Identities=17% Similarity=0.213 Sum_probs=71.4
Q ss_pred CCCCCHHHHHHHHHHHHHh----cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeE-
Q 002833 340 RRGISGGQKKRVTTGEMLV----GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI- 414 (875)
Q Consensus 340 ~rgLSGGerkRVsIA~aLv----~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~v- 414 (875)
+..|||||||||+||++|+ .+|++|+|||||++||+.....+.+.|+++. .+.++|++.|++ ++.+.||++
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~~~vi~~tH~~--~~~~~~d~~~ 292 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS--KHTQFIVITHNK--IVMEAADLLH 292 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT--TTSEEEEECCCT--TGGGGCSEEE
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEECCH--HHHhhCceEE
Confidence 3469999999999999997 6899999999999999999999999999985 367888888774 578899987
Q ss_pred -EEEeCCeE-EEecChhh
Q 002833 415 -ILLSEGQI-VYQGPRDN 430 (875)
Q Consensus 415 -ilL~~G~i-v~~Gp~~~ 430 (875)
++|.+|.. +.....++
T Consensus 293 ~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 293 GVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEEESSSCEEEEECCC--
T ss_pred EEEEeCCEEEEEEEEcch
Confidence 88888754 44444444
No 70
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.84 E-value=2.3e-24 Score=234.94 Aligned_cols=169 Identities=13% Similarity=0.170 Sum_probs=122.6
Q ss_pred hhhccccCCcccccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEE
Q 002833 171 LGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYI 250 (875)
Q Consensus 171 l~~~~~~~~~~~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv 250 (875)
+...++...+. ..+|++||+.|++|++++|+||||||||||+++|+|++ +|+|. +|+
T Consensus 102 i~~~~vs~~y~--~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I~---------------~~v 158 (305)
T 2v9p_A 102 FNYQNIELITF--INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL------GGSVL---------------SFA 158 (305)
T ss_dssp HHHTTCCHHHH--HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH------TCEEE---------------CGG
T ss_pred EEEEEEEEEcC--hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc------CceEE---------------EEe
Confidence 44555554443 56999999999999999999999999999999999998 58873 456
Q ss_pred ecCCCCCCCCCHHH-HHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCc
Q 002833 251 SQHDLHHGEMTVRE-TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI 329 (875)
Q Consensus 251 ~Q~d~~~~~lTV~E-tL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~ 329 (875)
+|++.++. .|++| |+.|..... . .+...++.+ |.+
T Consensus 159 ~q~~~lf~-~ti~~~ni~~~~~~~-------------~-----------------------------~~~~~i~~~-L~~ 194 (305)
T 2v9p_A 159 NHKSHFWL-ASLADTRAALVDDAT-------------H-----------------------------ACWRYFDTY-LRN 194 (305)
T ss_dssp GTTSGGGG-GGGTTCSCEEEEEEC-------------H-----------------------------HHHHHHHHT-TTG
T ss_pred cCcccccc-ccHHHHhhccCcccc-------------H-----------------------------HHHHHHHHH-hHc
Confidence 77766655 47876 776531100 0 012233332 444
Q ss_pred cccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHh
Q 002833 330 CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD 409 (875)
Q Consensus 330 ~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~ 409 (875)
..| | ..|||||||| ||+|+.+|+||+ |++||+.+...|.. + .|. .++.+
T Consensus 195 gld---g----~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~----l-----------tH~--~~~~~ 243 (305)
T 2v9p_A 195 ALD---G----YPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY----L-----------HSR--VQTFR 243 (305)
T ss_dssp GGG---T----CCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG----G-----------TTT--EEEEE
T ss_pred cCC---c----cCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH----H-----------hCC--HHHHH
Confidence 444 3 3699999999 999999999999 99999999988852 1 122 23456
Q ss_pred hcCeEEEEeCCeEEEecChhhHHHHHHHc
Q 002833 410 LFDDIILLSEGQIVYQGPRDNVLEFFEHM 438 (875)
Q Consensus 410 lfD~vilL~~G~iv~~Gp~~~~~~~F~~~ 438 (875)
.+|+| +|++|++++.|+++++..+|.++
T Consensus 244 ~aD~i-vl~~G~iv~~g~~~el~~~y~~l 271 (305)
T 2v9p_A 244 FEQPC-TDESGEQPFNITDADWKSFFVRL 271 (305)
T ss_dssp CCCCC-CCC---CCCCCCHHHHHHHHHHS
T ss_pred hCCEE-EEeCCEEEEeCCHHHHHHHHHHH
Confidence 79999 99999999999999997777654
No 71
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.84 E-value=3.9e-22 Score=201.44 Aligned_cols=144 Identities=14% Similarity=0.164 Sum_probs=102.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCC---ccCceEEEEecCCCCCCCCCHHHHHHHhhhhcCC
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF---VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGV 275 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~---~~~~~~~yv~Q~d~~~~~lTV~EtL~f~a~~~~~ 275 (875)
.++|+||||||||||+++|+|.+. |.++|.+..+. ..++.++|++|+. ++.+++ ++ +.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~--------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~~-~~--- 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG--------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-FS-SK--- 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG--------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-EE-ET---
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-HH-hh---
Confidence 589999999999999999999984 23444332211 1246789999974 232322 10 00
Q ss_pred cchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCC--ccccccccCccCCCCCHHHHHHHHH
Q 002833 276 GTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD--ICADTMVGDEMRRGISGGQKKRVTT 353 (875)
Q Consensus 276 ~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~--~~~dt~vg~~~~rgLSGGerkRVsI 353 (875)
+.. +..+.. +..||||||||++|
T Consensus 63 --------------------------------------------------~~~~~~~~~~~-----~~~lSgG~~qr~~l 87 (178)
T 1ye8_A 63 --------------------------------------------------FFTSKKLVGSY-----GVNVQYFEELAIPI 87 (178)
T ss_dssp --------------------------------------------------TCCCSSEETTE-----EECHHHHHHHHHHH
T ss_pred --------------------------------------------------cCCcccccccc-----ccCcCHHHHHHHHH
Confidence 000 112223 34599999999999
Q ss_pred HHH-----HhcCCcEEEEeC--CCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeec--CCchhHHhhcCeEEEEeCCeEEE
Q 002833 354 GEM-----LVGTANVLYMDE--ISTGLDSSTTFQICKFLKQMVHILDVTMIVALL--QPAPETYDLFDDIILLSEGQIVY 424 (875)
Q Consensus 354 A~a-----Lv~~p~iLlLDE--PTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~--q~~~ei~~lfD~vilL~~G~iv~ 424 (875)
|++ |+.+|++++||| ||++||+.....+.+.|++ .+.|+|+++| |+.+.+..++|+ .+|+++.
T Consensus 88 a~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 88 LERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred HhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 996 999999999999 9999999999999888875 3677888887 677778888887 5566655
No 72
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.84 E-value=5.6e-22 Score=198.55 Aligned_cols=60 Identities=12% Similarity=0.036 Sum_probs=54.8
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHH----------------HHHHHHHHHHHHHHhCCcEEEEeecCC
Q 002833 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSS----------------TTFQICKFLKQMVHILDVTMIVALLQP 403 (875)
Q Consensus 343 LSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~----------------t~~~i~~~L~~l~~~~~~tviisi~q~ 403 (875)
.||||||||+||++++.+|++|+|||||+|||+. ...++.+.|+++.++ |.|+|+++|++
T Consensus 84 ~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH~~ 159 (171)
T 4gp7_A 84 QESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-GFRYVYILNSP 159 (171)
T ss_dssp SHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEECSH
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEeCCH
Confidence 6999999999999999999999999999999999 668999999988776 89999988764
No 73
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.82 E-value=8.3e-22 Score=215.20 Aligned_cols=175 Identities=14% Similarity=0.205 Sum_probs=133.9
Q ss_pred ccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc---------cCceEEEEecCCC-C
Q 002833 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---------PQRTCAYISQHDL-H 256 (875)
Q Consensus 187 L~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~---------~~~~~~yv~Q~d~-~ 256 (875)
++++|+.+++|++++|+||||||||||++.|+|++++. +|+|.++|.+..... .++.++|++|++. .
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 166 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 166 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCcc
Confidence 45789999999999999999999999999999999886 899999998865421 1235899999988 8
Q ss_pred CCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCcccccccc
Q 002833 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (875)
Q Consensus 257 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (875)
+|.+||+|++.++... +. . ..+++.+|+.+..+..++
T Consensus 167 ~~~~~v~e~l~~~~~~-~~--------------------------------------d----~~lldt~gl~~~~~~~~~ 203 (302)
T 3b9q_A 167 KAATVLSKAVKRGKEE-GY--------------------------------------D----VVLCDTSGRLHTNYSLME 203 (302)
T ss_dssp CHHHHHHHHHHHHHHT-TC--------------------------------------S----EEEECCCCCSSCCHHHHH
T ss_pred CHHHHHHHHHHHHHHc-CC--------------------------------------c----chHHhcCCCCcchhHHHH
Confidence 8999999999875321 00 0 013456788777766665
Q ss_pred CccCCCCCHHHHHHHHHHHHHhcCCc--EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCc--------hh
Q 002833 337 DEMRRGISGGQKKRVTTGEMLVGTAN--VLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPA--------PE 406 (875)
Q Consensus 337 ~~~~rgLSGGerkRVsIA~aLv~~p~--iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~--------~e 406 (875)
+ || |||++||++|+.+|+ +|+|| ||+|||+.+. ++++.+..+.|+|+.+|-+. ..
T Consensus 204 e-----LS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~ 268 (302)
T 3b9q_A 204 E-----LI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSV 268 (302)
T ss_dssp H-----HH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHH
T ss_pred H-----HH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheeh
Confidence 4 99 999999999999999 99999 9999999854 34555456888888876322 22
Q ss_pred HHhhcCeEEEEeCCeE
Q 002833 407 TYDLFDDIILLSEGQI 422 (875)
Q Consensus 407 i~~lfD~vilL~~G~i 422 (875)
+....+.|.++..|+.
T Consensus 269 ~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 269 VEELGIPVKFIGVGEA 284 (302)
T ss_dssp HHHHCCCEEEEECSSS
T ss_pred HHHHCCCEEEEeCCCC
Confidence 3345678888888865
No 74
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.80 E-value=1.8e-21 Score=209.40 Aligned_cols=146 Identities=14% Similarity=0.201 Sum_probs=92.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHHHHHHHhhhhcCCcch
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTR 278 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~ 278 (875)
.++|+||||||||||+|+|+|...|+ +|+|.++|+++.....++.++|++|++.+++.+||.||+.|+........
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~---~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~- 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR---KASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENC- 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHH-
Confidence 47999999999999999999999986 99999999987654445789999999999999999999988754321100
Q ss_pred hHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCCCHHHHHHHHHHHHHh
Q 002833 279 YELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358 (875)
Q Consensus 279 ~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGerkRVsIA~aLv 358 (875)
...+.. .++ .+..+..++ .|||||||||.+||+++
T Consensus 80 ------------------~~~i~~------------------~~~----~~~~~~~~~-----~LS~G~~qrv~iaRal~ 114 (270)
T 3sop_A 80 ------------------WEPIEK------------------YIN----EQYEKFLKE-----EVNIARKKRIPDTRVHC 114 (270)
T ss_dssp ------------------SHHHHH------------------HHH----HHHHHHHHH-----HSCTTCCSSCCCCSCCE
T ss_pred ------------------HHHHHH------------------HHH----HHHHhhhHH-----hcCcccchhhhhheeee
Confidence 000111 111 122233333 49999999999999987
Q ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecC
Q 002833 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQ 402 (875)
Q Consensus 359 ~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q 402 (875)
. ++|+|||+.|||+.. .+.++.+.+. .++|+.++.
T Consensus 115 ~---lllldep~~gL~~lD----~~~l~~L~~~--~~vI~Vi~K 149 (270)
T 3sop_A 115 C---LYFISPTGHSLRPLD----LEFMKHLSKV--VNIIPVIAK 149 (270)
T ss_dssp E---EEEECCCSSSCCHHH----HHHHHHHHTT--SEEEEEETT
T ss_pred e---eEEEecCCCcCCHHH----HHHHHHHHhc--CcEEEEEec
Confidence 6 999999999999987 4556666543 677777654
No 75
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.78 E-value=2.4e-21 Score=221.74 Aligned_cols=191 Identities=15% Similarity=0.127 Sum_probs=145.4
Q ss_pred hhhccccCCcccccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCE---eCCCC------
Q 002833 171 LGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGH---ELNEF------ 241 (875)
Q Consensus 171 l~~~~~~~~~~~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~---~~~~~------ 241 (875)
++..++...+.....+|+++ +.|.+|++++|+|||||||||||++|+|..+++ +|.|.++|+ ++.++
T Consensus 132 l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~---~G~i~~~G~r~~ev~~~~~~~~~ 207 (438)
T 2dpy_A 132 LQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD---VIVVGLIGERGREVKDFIENILG 207 (438)
T ss_dssp TTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHHTTTH
T ss_pred eEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEeceecHHHHHHHHhhcc
Confidence 44455555554356799999 999999999999999999999999999999986 999999998 44332
Q ss_pred --ccCceEEEEecC-CCCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHH
Q 002833 242 --VPQRTCAYISQH-DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVT 318 (875)
Q Consensus 242 --~~~~~~~yv~Q~-d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (875)
..++.++|++|+ +..++.+||.+|+.+.++... +.. .+
T Consensus 208 ~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~--------------~~~--------------------~~----- 248 (438)
T 2dpy_A 208 PDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFR--------------DRG--------------------QH----- 248 (438)
T ss_dssp HHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHH--------------TTT--------------------CE-----
T ss_pred ccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHH--------------hCC--------------------CC-----
Confidence 124679999995 566788899999988653210 000 00
Q ss_pred HHHHHHhCCCccccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH---hCCc-
Q 002833 319 DYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVH---ILDV- 394 (875)
Q Consensus 319 ~~iL~~lgL~~~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~---~~~~- 394 (875)
++ ...|. +..+|||| |||+|| +.+|++ |+|||+.+...+.+.|+++.+ ..|.
T Consensus 249 --v~------~~ld~------l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~Gsi 304 (438)
T 2dpy_A 249 --VL------LIMDS------LTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSI 304 (438)
T ss_dssp --EE------EEEEC------HHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEE
T ss_pred --HH------HHHHh------HHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcc
Confidence 00 00111 23499999 999999 888887 999999999999999999875 2353
Q ss_pred ----EEEEeecCCchhHHhhcCeEEEEeCCeEEEecChhhH
Q 002833 395 ----TMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNV 431 (875)
Q Consensus 395 ----tviisi~q~~~ei~~lfD~vilL~~G~iv~~Gp~~~~ 431 (875)
|+++..|+.. ..++|++++|.+|+++..|++.++
T Consensus 305 T~~~tVlv~tHdl~---~~iad~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 305 TAFYTVLTEGDDQQ---DPIADSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp EEEEEEECSSSCSC---CHHHHHHHHHSSEEEEECHHHHHT
T ss_pred cceeEEEEeCCCcc---chhhceEEEEeCcEEEEeCCHHHc
Confidence 7777666654 467999999999999999987765
No 76
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.78 E-value=1.3e-20 Score=209.95 Aligned_cols=174 Identities=14% Similarity=0.203 Sum_probs=134.2
Q ss_pred cceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc---------cCceEEEEecCCC-CC
Q 002833 188 KDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---------PQRTCAYISQHDL-HH 257 (875)
Q Consensus 188 ~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~---------~~~~~~yv~Q~d~-~~ 257 (875)
+++|+.+++|++++|+||||||||||++.|+|++++. +|+|.++|.+..... .++.++|++|++. .+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc---CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 4688899999999999999999999999999999885 899999998865421 1245899999988 88
Q ss_pred CCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccC
Q 002833 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (875)
Q Consensus 258 ~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (875)
|.+||+|++.++... +. . ..+++.+|+.+..+..++
T Consensus 225 p~~tv~e~l~~~~~~-~~--------------------------------------d----~~lldt~Gl~~~~~~~~~- 260 (359)
T 2og2_A 225 AATVLSKAVKRGKEE-GY--------------------------------------D----VVLCDTSGRLHTNYSLME- 260 (359)
T ss_dssp HHHHHHHHHHHHHHT-TC--------------------------------------S----EEEEECCCCSSCCHHHHH-
T ss_pred hhhhHHHHHHHHHhC-CC--------------------------------------H----HHHHHhcCCChhhhhHHH-
Confidence 999999999876321 00 0 013456788777666655
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCc--EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCc--------hhH
Q 002833 338 EMRRGISGGQKKRVTTGEMLVGTAN--VLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPA--------PET 407 (875)
Q Consensus 338 ~~~rgLSGGerkRVsIA~aLv~~p~--iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~--------~ei 407 (875)
.|| |||+.||++|+.+|+ +|+|| ||+|||+.+. ++++.+..+.|+|+.+|-+. ...
T Consensus 261 ----eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~------~~~~~~~~g~t~iiiThlD~~~~gG~~lsi~ 326 (359)
T 2og2_A 261 ----ELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVV 326 (359)
T ss_dssp ----HHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHH------HHHHHHHTCCCEEEEESCTTCSCTHHHHHHH
T ss_pred ----HHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHH------HHHHHHhcCCeEEEEecCcccccccHHHHHH
Confidence 489 999999999999999 99999 9999999865 34455456888888877321 223
Q ss_pred HhhcCeEEEEeCCeE
Q 002833 408 YDLFDDIILLSEGQI 422 (875)
Q Consensus 408 ~~lfD~vilL~~G~i 422 (875)
....+.|..+..|+.
T Consensus 327 ~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 327 EELGIPVKFIGVGEA 341 (359)
T ss_dssp HHHCCCEEEEECSSS
T ss_pred HHhCCCEEEEeCCCC
Confidence 355678888888864
No 77
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.78 E-value=1e-22 Score=209.83 Aligned_cols=185 Identities=10% Similarity=0.038 Sum_probs=114.9
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCH
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 262 (875)
...+|+| ..|++||+++|+||||||||||+|+|+|+++. +.+.+.+.+.+... ..++.++|++|+...++.+||
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~---i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~ 81 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN---LHFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLID 81 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHSTT---CEECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHH
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc---eEEcccccccCCcc-cccCCCeeEecCHHHHHHHHh
Confidence 3457888 68999999999999999999999999999852 23332222222211 123568999999888888888
Q ss_pred HHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHH------HHHhCCCcccccccc
Q 002833 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYV------LKILGLDICADTMVG 336 (875)
Q Consensus 263 ~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i------L~~lgL~~~~dt~vg 336 (875)
.|++.+.....+....+. ..+.+. ...+++. ++.+|+.+.++..++
T Consensus 82 ~~~l~~~~~~~~n~~~~g----~~~~~~------------------------~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 133 (207)
T 1znw_A 82 QGELLEWAEIHGGLHRSG----TLAQPV------------------------RAAAATGVPVLIEVDLAGARAIKKTMPE 133 (207)
T ss_dssp TTCEEEEEEEGGGTEEEE----EEHHHH------------------------HHHHHHTCCEEEECCHHHHHHHHHHCTT
T ss_pred cCCceeehhhcCchhhcC----CcHHHH------------------------HHHHHcCCeEEEEeCHHHHHHHHHhcCC
Confidence 887643321111000000 000000 0011111 334445444444443
Q ss_pred CccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCC----CHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcC
Q 002833 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGL----DSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (875)
Q Consensus 337 ~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGL----Ds~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD 412 (875)
.|| +|+.+|++++|||||+|| |+..+.++.+.++++.+..+.|+|++.| ..+++.++||
T Consensus 134 -----~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtH-dl~~~~~~~d 196 (207)
T 1znw_A 134 -----AVT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNR-RLESACAELV 196 (207)
T ss_dssp -----SEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECS-SHHHHHHHHH
T ss_pred -----cEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECC-CHHHHHHHHH
Confidence 366 899999999999999998 7889999999999998666888888765 5678999999
Q ss_pred eEEEEe
Q 002833 413 DIILLS 418 (875)
Q Consensus 413 ~vilL~ 418 (875)
+|++|.
T Consensus 197 ~i~~l~ 202 (207)
T 1znw_A 197 SLLVGT 202 (207)
T ss_dssp HHHC--
T ss_pred HHHHhc
Confidence 999984
No 78
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.77 E-value=8.5e-23 Score=212.64 Aligned_cols=171 Identities=13% Similarity=0.072 Sum_probs=107.0
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc----CceEEEEecCCCCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (875)
..-|+|||+.|++|++++|+||||||||||+++|+|++ | |+|.+ |.+.....+ ++.++|++|++..++.
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFED 82 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHH
Confidence 45799999999999999999999999999999999987 3 88999 776543222 3568899998665544
Q ss_pred CCH-HHHHHH---hhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccc
Q 002833 260 MTV-RETLDF---SGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335 (875)
Q Consensus 260 lTV-~EtL~f---~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v 335 (875)
++. .+++.+ ...+.+.. ...++++++...+ ..+
T Consensus 83 ~~~~~~~l~~~~~~~~~~g~~--------------------------------------~~~i~~~l~~~~~-----~il 119 (218)
T 1z6g_A 83 KLKNEDFLEYDNYANNFYGTL--------------------------------------KSEYDKAKEQNKI-----CLF 119 (218)
T ss_dssp HHHTTCEEEEEEETTEEEEEE--------------------------------------HHHHHHHHHTTCE-----EEE
T ss_pred hhhccchhhhhhcccccCCCc--------------------------------------HHHHHHHHhCCCc-----EEE
Confidence 331 111111 11111100 0012333333221 111
Q ss_pred cCccCCCCCHHHHHHHHH-----HHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhh
Q 002833 336 GDEMRRGISGGQKKRVTT-----GEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL 410 (875)
Q Consensus 336 g~~~~rgLSGGerkRVsI-----A~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~l 410 (875)
. ..+|||||||+++ +++++.+|++++|||||+++|..+...|.+.|.+..+. .+ + .| ...
T Consensus 120 ~----~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~--~~--~-~h------~~~ 184 (218)
T 1z6g_A 120 E----MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIE--LH--E-AN------LLN 184 (218)
T ss_dssp E----ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHH--HH--H-HT------TSC
T ss_pred E----ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH--HH--h-hc------ccC
Confidence 1 3599999999999 88999999999999999999999999999999887653 23 1 12 145
Q ss_pred cCeEEEEeC
Q 002833 411 FDDIILLSE 419 (875)
Q Consensus 411 fD~vilL~~ 419 (875)
||.|+++++
T Consensus 185 ~d~iiv~~~ 193 (218)
T 1z6g_A 185 FNLSIINDD 193 (218)
T ss_dssp CSEEEECSS
T ss_pred CCEEEECCC
Confidence 787777653
No 79
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.77 E-value=2.8e-18 Score=191.36 Aligned_cols=86 Identities=14% Similarity=0.096 Sum_probs=74.7
Q ss_pred CccCC-CCCHHHHHHHHHHHHHh---------cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchh
Q 002833 337 DEMRR-GISGGQKKRVTTGEMLV---------GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE 406 (875)
Q Consensus 337 ~~~~r-gLSGGerkRVsIA~aLv---------~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~e 406 (875)
+..++ .+||||||||+||++|+ ++|+||+|||||++||+.....+++.|+++. .|+|+++| +. +
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~----qt~i~~th-~~-~ 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP----QAIVTGTE-LA-P 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS----EEEEEESS-CC-T
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC----cEEEEEEe-cc-c
Confidence 44455 69999999999999999 8999999999999999999999999998763 56666655 43 3
Q ss_pred HHhhcCeEEEEeCCeEEEecChhhH
Q 002833 407 TYDLFDDIILLSEGQIVYQGPRDNV 431 (875)
Q Consensus 407 i~~lfD~vilL~~G~iv~~Gp~~~~ 431 (875)
.+|++++|++|+++..|+++++
T Consensus 333 ---~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 ---GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp ---TCSEEEEEETTEEEECCCTTTS
T ss_pred ---cCCEEEEEECCEEEecCCHHHH
Confidence 7999999999999999998765
No 80
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.75 E-value=2.6e-20 Score=204.33 Aligned_cols=128 Identities=9% Similarity=0.009 Sum_probs=97.9
Q ss_pred ceeE-EEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHHHHHH
Q 002833 189 DVSG-IVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLD 267 (875)
Q Consensus 189 ~vs~-~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~EtL~ 267 (875)
|+|. .+++|++++|+||||||||||+++|+|++++. .|. +.++||+|++.+++. |++|++.
T Consensus 81 ~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~---~G~--------------~~v~~v~qd~~~~~~-t~~e~~~ 142 (312)
T 3aez_A 81 PQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARW---DHH--------------PRVDLVTTDGFLYPN-AELQRRN 142 (312)
T ss_dssp CCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTS---TTC--------------CCEEEEEGGGGBCCH-HHHHHTT
T ss_pred cccccCCCCCEEEEEECCCCchHHHHHHHHHhhcccc---CCC--------------CeEEEEecCccCCcc-cHHHHHH
Confidence 4444 37899999999999999999999999999874 342 458999999999988 9999986
Q ss_pred HhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCCCHHH
Q 002833 268 FSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQ 347 (875)
Q Consensus 268 f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGe 347 (875)
+... ++.... .....+.++|+.++ .+..+..+. .+||||
T Consensus 143 ~~~~-~g~~~~----------------------------------~d~~~~~~~L~~l~-~~~~~~~~~-----~lS~G~ 181 (312)
T 3aez_A 143 LMHR-KGFPES----------------------------------YNRRALMRFVTSVK-SGSDYACAP-----VYSHLH 181 (312)
T ss_dssp CTTC-TTSGGG----------------------------------BCHHHHHHHHHHHH-TTCSCEEEE-----EEETTT
T ss_pred HHHh-cCCChH----------------------------------HHHHHHHHHHHHhC-CCcccCCcc-----cCChhh
Confidence 5321 111000 01112445677777 444455554 499999
Q ss_pred HHHHHHHHHHhcCCcEEEEeCCCCCCCH
Q 002833 348 KKRVTTGEMLVGTANVLYMDEISTGLDS 375 (875)
Q Consensus 348 rkRVsIA~aLv~~p~iLlLDEPTsGLDs 375 (875)
+|||++|++++.+|+|||+|||+..+|+
T Consensus 182 ~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 182 YDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp TEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred hhhhhhHHHhccCCCEEEECCccccCCc
Confidence 9999999999999999999999999987
No 81
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.74 E-value=3.4e-19 Score=193.36 Aligned_cols=187 Identities=15% Similarity=0.076 Sum_probs=115.9
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCcc-EEEECCEeCCCCccCceEEEEecCCCCCCCCC
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASG-KITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG-~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lT 261 (875)
...+|+++++.+++|++++|+||||||||||++.|+|...+. +| .|.|.+.+.......+.+.++.|... ++
T Consensus 21 g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~---~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~ 93 (296)
T 1cr0_A 21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA---MGKKVGLAMLEESVEETAEDLIGLHNRVR----LR 93 (296)
T ss_dssp SCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT---SCCCEEEEESSSCHHHHHHHHHHHHTTCC----GG
T ss_pred CHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH---cCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hh
Confidence 456899999999999999999999999999999999998764 56 66554432211000011111111110 11
Q ss_pred HHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCC
Q 002833 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (875)
Q Consensus 262 V~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (875)
+.+++... .+... +....++.+++..++. ..+ ...
T Consensus 94 ~~~~l~~~--------------~~~~~------------------------~~~~~~~~~l~~~~l~-i~~------~~~ 128 (296)
T 1cr0_A 94 QSDSLKRE--------------IIENG------------------------KFDQWFDELFGNDTFH-LYD------SFA 128 (296)
T ss_dssp GCHHHHHH--------------HHHHT------------------------HHHHHHHHHHSSSCEE-EEC------CCC
T ss_pred hccccccC--------------CCCHH------------------------HHHHHHHHHhccCCEE-EEC------CCC
Confidence 11222110 00000 0111223333322221 111 113
Q ss_pred CCCHHH-HHHHHHHHHHhcCCcEEEEeCCCC---C---CCH-HHHHHHHHHHHHHHHhCCcEEEEeecCC-ch-------
Q 002833 342 GISGGQ-KKRVTTGEMLVGTANVLYMDEIST---G---LDS-STTFQICKFLKQMVHILDVTMIVALLQP-AP------- 405 (875)
Q Consensus 342 gLSGGe-rkRVsIA~aLv~~p~iLlLDEPTs---G---LDs-~t~~~i~~~L~~l~~~~~~tviisi~q~-~~------- 405 (875)
.+|.+| +||+. |+++..+|+++++||||+ + +|. ....++++.|+++++..++|+|++.|.. ..
T Consensus 129 ~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~ 207 (296)
T 1cr0_A 129 EAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEE 207 (296)
T ss_dssp SCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC----------
T ss_pred CCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCcccccccccc
Confidence 489999 66676 999999999999999999 5 555 6778899999999987789999987764 23
Q ss_pred -------------hHHhhcCeEEEEeCCeE
Q 002833 406 -------------ETYDLFDDIILLSEGQI 422 (875)
Q Consensus 406 -------------ei~~lfD~vilL~~G~i 422 (875)
.+.++||+|++|++|+.
T Consensus 208 ~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 208 GRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp -------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 67789999999998874
No 82
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.73 E-value=4.3e-19 Score=196.18 Aligned_cols=134 Identities=16% Similarity=0.202 Sum_probs=104.2
Q ss_pred ccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHHH
Q 002833 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRE 264 (875)
Q Consensus 185 ~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 264 (875)
++++++|+.+++|++++|+|||||||||||++|+|+++|+ +|.|+++|.+ +.... + +
T Consensus 159 ~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~--e~~~~-------~---~-------- 215 (330)
T 2pt7_A 159 QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTE--EIVFK-------H---H-------- 215 (330)
T ss_dssp HHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSC--CCCCS-------S---C--------
T ss_pred HHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCee--ccccc-------c---c--------
Confidence 3899999999999999999999999999999999999986 9999999864 11100 0 0
Q ss_pred HHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCCC
Q 002833 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (875)
Q Consensus 265 tL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLS 344 (875)
+ +. .++ + .|
T Consensus 216 ------~-~~--------------------------------------------------i~~-------~-----~g-- 224 (330)
T 2pt7_A 216 ------K-NY--------------------------------------------------TQL-------F-----FG-- 224 (330)
T ss_dssp ------S-SE--------------------------------------------------EEE-------E-----CB--
T ss_pred ------h-hE--------------------------------------------------EEE-------E-----eC--
Confidence 0 00 000 0 01
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCeE
Q 002833 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (875)
Q Consensus 345 GGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~i 422 (875)
|||+||++||++|..+|+++++||||+. ++.+.|+.+.. .+.|+++++|.++ +.+.+|++++|.+|+.
T Consensus 225 gg~~~r~~la~aL~~~p~ilildE~~~~-------e~~~~l~~~~~-g~~tvi~t~H~~~--~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 225 GNITSADCLKSCLRMRPDRIILGELRSS-------EAYDFYNVLCS-GHKGTLTTLHAGS--SEEAFIRLANMSSSNS 292 (330)
T ss_dssp TTBCHHHHHHHHTTSCCSEEEECCCCST-------HHHHHHHHHHT-TCCCEEEEEECSS--HHHHHHHHHHHHHTSG
T ss_pred CChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHHHHHHHhc-CCCEEEEEEcccH--HHHHhhhheehhcCCc
Confidence 8999999999999999999999999982 35667777654 2457888888765 7788999999988753
No 83
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.73 E-value=4.4e-19 Score=187.48 Aligned_cols=155 Identities=14% Similarity=0.065 Sum_probs=96.4
Q ss_pred cccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCC
Q 002833 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261 (875)
Q Consensus 182 ~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lT 261 (875)
+.+++|+|||+.+++|++++|+||||||||||+++|+|++ |.+.++ ..++.++|++|++ +++.+|
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-------G~~~~~-------~~~~~i~~v~~d~-~~~~l~ 74 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-------GQNEVE-------QRQRKVVILSQDR-FYKVLT 74 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH-------TGGGSC-------GGGCSEEEEEGGG-GBCCCC
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-------chhccc-------ccCCceEEEeCCc-CccccC
Confidence 3567999999999999999999999999999999999976 333333 1346789999985 778899
Q ss_pred HHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCC
Q 002833 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (875)
Q Consensus 262 V~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (875)
+.|++.+.......... + ..+.+ .+...|+. |.+..+..+.
T Consensus 75 ~~~~~~~~~~~~~~~~~----------~-------~~~~~---------------~~~~~L~~--l~~~~~~~~~----- 115 (245)
T 2jeo_A 75 AEQKAKALKGQYNFDHP----------D-------AFDND---------------LMHRTLKN--IVEGKTVEVP----- 115 (245)
T ss_dssp HHHHHHHHTTCCCTTSG----------G-------GBCHH---------------HHHHHHHH--HHTTCCEEEC-----
T ss_pred HhHhhhhhccCCCCCCc----------c-------cccHH---------------HHHHHHHH--HHCCCCeecc-----
Confidence 99998775432211000 0 00000 11222332 2344444443
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecC
Q 002833 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQ 402 (875)
Q Consensus 342 gLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q 402 (875)
.+|+||+||+.+ ++++.+|+++++|||...+|.. +.++ .+.+++++.|.
T Consensus 116 ~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~---~~~~i~v~th~ 164 (245)
T 2jeo_A 116 TYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDM---FHLRLFVDTDS 164 (245)
T ss_dssp CEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTT---CSEEEEEECCH
T ss_pred cccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHh---cCeEEEEECCH
Confidence 599999999988 5788899999999998888753 2222 36788887664
No 84
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.72 E-value=9.7e-17 Score=177.89 Aligned_cols=77 Identities=22% Similarity=0.289 Sum_probs=67.4
Q ss_pred cCCCCCHHHHH------HHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcC
Q 002833 339 MRRGISGGQKK------RVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (875)
Q Consensus 339 ~~rgLSGGerk------RVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD 412 (875)
.+..||||||| |+++|++|+.+|++|+|||||+|||+.....+.+.|+++.+. +.|+|++.|+ +++.+.||
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~-~~~vi~~sH~--~~~~~~~d 321 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHD--EELKDAAD 321 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGG-SSEEEEEESC--GGGGGGCS
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEECh--HHHHHhCC
Confidence 34569999999 667788888999999999999999999999999999998764 7788888876 36789999
Q ss_pred eEEEEe
Q 002833 413 DIILLS 418 (875)
Q Consensus 413 ~vilL~ 418 (875)
++++|.
T Consensus 322 ~~~~l~ 327 (339)
T 3qkt_A 322 HVIRIS 327 (339)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999995
No 85
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.71 E-value=1.7e-17 Score=194.20 Aligned_cols=77 Identities=16% Similarity=0.213 Sum_probs=69.3
Q ss_pred CCCC-CHHHHHHHHHHHHHhcCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEE
Q 002833 340 RRGI-SGGQKKRVTTGEMLVGTA--NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (875)
Q Consensus 340 ~rgL-SGGerkRVsIA~aLv~~p--~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vil 416 (875)
+..| ||||||||+||++|+.+| ++|+|||||+|||+.++..|.+.|+++++ +.|+|+++|++ ++...||++++
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~itH~~--~~~~~~d~~~~ 469 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHLA--QIAARAHHHYK 469 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEEECCCH--HHHHHSSEEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCH--HHHHhCCEEEE
Confidence 4567 999999999999999999 99999999999999999999999999986 68999988874 45678999999
Q ss_pred EeCC
Q 002833 417 LSEG 420 (875)
Q Consensus 417 L~~G 420 (875)
|++|
T Consensus 470 ~~~~ 473 (517)
T 4ad8_A 470 VEKQ 473 (517)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9654
No 86
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.70 E-value=2.2e-17 Score=202.72 Aligned_cols=169 Identities=24% Similarity=0.333 Sum_probs=123.6
Q ss_pred HHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHh
Q 002833 212 TLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQ 291 (875)
Q Consensus 212 TLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~ 291 (875)
|...|..+++++. .|+|+++|+++.+ +..+||.|++.|.....-.......
T Consensus 383 ~C~~C~g~rl~~~---~~~V~i~G~~i~~----------------~~~~~v~~~l~~~~~~~l~~~~~~~---------- 433 (916)
T 3pih_A 383 TCSVCGGRRLNRE---ALSVKINGLNIHE----------------FTELSISEELEFLKNLNLTEREREI---------- 433 (916)
T ss_dssp ECTTTCSCCBCTT---GGGEEETTEEHHH----------------HHHSBHHHHHHHHHSCCCCTTTTTT----------
T ss_pred cchhcccccCChH---hcCcEECCccHHH----------------hhhCCHHHHHHHHHhccCcHHHHHH----------
Confidence 3445556677775 8999999998754 2346899999884332110000000
Q ss_pred cCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHhcCCc--EEEEeC
Q 002833 292 AGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN--VLYMDE 368 (875)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~-~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~--iLlLDE 368 (875)
.....+ +. ......|..+||... .+..++ .|||||||||.||++|+.+|+ +|+|||
T Consensus 434 --------~~~~~~-------~~-~~~~~~L~~vgL~~l~l~r~~~-----~LSGGe~QRv~LAraL~~~p~~~lllLDE 492 (916)
T 3pih_A 434 --------VGELLK-------EI-EKRLEFLVDVGLEYLTLSRSAT-----TLSGGESQRIRLATQIGSGLTGVIYVLDE 492 (916)
T ss_dssp --------HHHHHH-------HH-HHHHHHHHTTTCTTCBTTSBGG-----GCCHHHHHHHHHHHHHHTTCCSCEEEEEC
T ss_pred --------HHhhHH-------HH-HHHHHHHHHcCCccccccCCcc-----cCCHHHHHHHHHHHHHhhCCCCcEEEEEC
Confidence 000000 00 112346788999764 566665 499999999999999999877 999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEE------eCCeEEEecChhhHHH
Q 002833 369 ISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL------SEGQIVYQGPRDNVLE 433 (875)
Q Consensus 369 PTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL------~~G~iv~~Gp~~~~~~ 433 (875)
||+|||+.....+++.|+++.+ .|.|+|++.|+. +....+|+|++| ++|+++++|+++++..
T Consensus 493 PT~gLD~~~~~~l~~~L~~L~~-~G~TvivVtHd~--~~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 493 PTIGLHPRDTERLIKTLKKLRD-LGNTVIVVEHDE--EVIRNADHIIDIGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp TTTTCCGGGHHHHHHHHHHTTT-TTCEEEEECCCH--HHHHTCSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred CccCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH--HHHHhCCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence 9999999999999999999975 588999987764 345669999999 8999999999998753
No 87
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.69 E-value=3.3e-17 Score=192.07 Aligned_cols=156 Identities=13% Similarity=0.083 Sum_probs=116.6
Q ss_pred eEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHHHHHHHhh
Q 002833 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSG 270 (875)
Q Consensus 191 s~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~EtL~f~a 270 (875)
++.+++|++++|+||||||||||++.++|...+ +|+ +.+.|++|++. .++.++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~----~G~--------------~vi~~~~ee~~----~~l~~~~~--- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA----NKE--------------RAILFAYEESR----AQLLRNAY--- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT----TTC--------------CEEEEESSSCH----HHHHHHHH---
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh----CCC--------------CEEEEEEeCCH----HHHHHHHH---
Confidence 569999999999999999999999999998765 242 12455566521 01221110
Q ss_pred hhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCCCHHHHHH
Q 002833 271 RCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKR 350 (875)
Q Consensus 271 ~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGerkR 350 (875)
+ . ++ + .+. +...|+....+..+. .|||||+||
T Consensus 330 ~-~-------------------g~----~------------------~~~-~~~~g~~~~~~~~p~-----~LS~g~~q~ 361 (525)
T 1tf7_A 330 S-W-------------------GM----D------------------FEE-MERQNLLKIVCAYPE-----SAGLEDHLQ 361 (525)
T ss_dssp T-T-------------------SC----C------------------HHH-HHHTTSEEECCCCGG-----GSCHHHHHH
T ss_pred H-c-------------------CC----C------------------HHH-HHhCCCEEEEEeccc-----cCCHHHHHH
Confidence 0 0 00 0 011 223566555555443 599999999
Q ss_pred HHHHHHHhcCCcEEEEeCCCCCCCHH-----HHHHHHHHHHHHHHhCCcEEEEeecCCc---------hhHHhhcCeEEE
Q 002833 351 VTTGEMLVGTANVLYMDEISTGLDSS-----TTFQICKFLKQMVHILDVTMIVALLQPA---------PETYDLFDDIIL 416 (875)
Q Consensus 351 VsIA~aLv~~p~iLlLDEPTsGLDs~-----t~~~i~~~L~~l~~~~~~tviisi~q~~---------~ei~~lfD~vil 416 (875)
+.+|+++..+|++|++| ||+|||.. .+..+.++++.+.+ .|.|+|++.|+.. ..+..++|+|++
T Consensus 362 ~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~-~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~ 439 (525)
T 1tf7_A 362 IIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQ-EEITGLFTNTSDQFMGAHSITDSHISTITDTIIL 439 (525)
T ss_dssp HHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHH-TTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEE
T ss_pred HHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHh-CCCEEEEEECcccccCcccccCcccceeeeEEEE
Confidence 99999999999999999 99999999 99999999998875 5899999888762 456778999999
Q ss_pred EeCCe
Q 002833 417 LSEGQ 421 (875)
Q Consensus 417 L~~G~ 421 (875)
|.+|+
T Consensus 440 L~~ge 444 (525)
T 1tf7_A 440 LQYVE 444 (525)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99886
No 88
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.68 E-value=2.4e-18 Score=191.31 Aligned_cols=192 Identities=14% Similarity=0.102 Sum_probs=130.8
Q ss_pred hhhccccCCcccccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCC---------
Q 002833 171 LGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF--------- 241 (875)
Q Consensus 171 l~~~~~~~~~~~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~--------- 241 (875)
++..++.+.+.....+|+++ +.|.+|++++|+|||||||||||++|+|..+++ .|.|.+.|++..+.
T Consensus 46 i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~---~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 46 LLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD---IIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp TTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHTTSCH
T ss_pred eeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC---EEEEEEecccHHHHHHHHHhhhh
Confidence 34444544444356799999 999999999999999999999999999999986 89999998652111
Q ss_pred -ccCceEEEEecCCCCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHH
Q 002833 242 -VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDY 320 (875)
Q Consensus 242 -~~~~~~~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (875)
..++.+.++.|.+. ...+.+.-.... +. ..+
T Consensus 122 ~~~~~~v~~~~~~~~-----~~~~r~~~~~~~------------~~-------------------------------~ae 153 (347)
T 2obl_A 122 STLSKCVLVVTTSDR-----PALERMKAAFTA------------TT-------------------------------IAE 153 (347)
T ss_dssp HHHTTEEEEEECTTS-----CHHHHHHHHHHH------------HH-------------------------------HHH
T ss_pred hhhhceEEEEECCCC-----CHHHHHHHHHHH------------HH-------------------------------HHH
Confidence 12356778887542 222222111000 00 000
Q ss_pred HHHHhCCCccccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-hCCc-----
Q 002833 321 VLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVH-ILDV----- 394 (875)
Q Consensus 321 iL~~lgL~~~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~-~~~~----- 394 (875)
.+...| .|..+--+.+..+|+|| |||++| +++|++ |+|||+....++.+.++++.+ ..|.
T Consensus 154 ~~~~~~----~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~ 219 (347)
T 2obl_A 154 YFRDQG----KNVLLMMDSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIY 219 (347)
T ss_dssp HHHTTT----CEEEEEEETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEE
T ss_pred HHHhcc----ccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEE
Confidence 000001 11000001234599999 899999 577777 999999999999999999875 3465
Q ss_pred EEEEeecCCchhHHhhcCeEEEEeCCeEEEecChhhH
Q 002833 395 TMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNV 431 (875)
Q Consensus 395 tviisi~q~~~ei~~lfD~vilL~~G~iv~~Gp~~~~ 431 (875)
|+++..|+.. ..+||++++|.+|+++..|+.++.
T Consensus 220 tVl~~thdl~---~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 220 TVLLESDNVN---DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp EEECCSSCCC---CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred EEEEeCCCCC---ChhhhheEEeeCcEEEEeCCHHHc
Confidence 6666665544 456999999999999999987765
No 89
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.67 E-value=5.8e-17 Score=199.84 Aligned_cols=89 Identities=13% Similarity=0.199 Sum_probs=74.9
Q ss_pred CCCCHHHHHHHHHHHHH--hcCCcEEEEeCCCCCCCHHHHHHH-HHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEE
Q 002833 341 RGISGGQKKRVTTGEML--VGTANVLYMDEISTGLDSSTTFQI-CKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (875)
Q Consensus 341 rgLSGGerkRVsIA~aL--v~~p~iLlLDEPTsGLDs~t~~~i-~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL 417 (875)
+++|+|+++++.+|++| +++|+++||||||+|||+.....+ ...++.+.+..|.++++++|. .++.+++|++..+
T Consensus 720 ~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~--~el~~lad~~~~v 797 (934)
T 3thx_A 720 KGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHF--HELTALANQIPTV 797 (934)
T ss_dssp ---CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESC--GGGGGGGGTCTTE
T ss_pred HhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCc--HHHHHHhccccee
Confidence 46899999999999988 999999999999999999999888 566777776568899998887 3677899999999
Q ss_pred eCCeEEEecChhhH
Q 002833 418 SEGQIVYQGPRDNV 431 (875)
Q Consensus 418 ~~G~iv~~Gp~~~~ 431 (875)
.+|++...++.+++
T Consensus 798 ~ng~v~~~~~~~~l 811 (934)
T 3thx_A 798 NNLHVTALTTEETL 811 (934)
T ss_dssp EEEEEEEEEETTEE
T ss_pred EeeEEEEEecCCcE
Confidence 99999988877654
No 90
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.65 E-value=1.8e-17 Score=171.71 Aligned_cols=155 Identities=17% Similarity=0.139 Sum_probs=94.7
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCC----CCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHHHHHH
Q 002833 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL----RASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLD 267 (875)
Q Consensus 192 ~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~----~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~EtL~ 267 (875)
+-|++|++++|+||||||||||+++|+|...+.. ...|.|++++.... ..+.++++.|...+.+. ||.||+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~---~~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC---CHHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC---CHHHHHHHHHHcCCCHH-HHhhcEE
Confidence 5799999999999999999999999999554310 01335555554210 01122333333222222 3333322
Q ss_pred HhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCCCHHH
Q 002833 268 FSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQ 347 (875)
Q Consensus 268 f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGe 347 (875)
+. +..++++
T Consensus 96 ~~-----------------------------------------------------------------------~~~~~~~ 104 (231)
T 4a74_A 96 VA-----------------------------------------------------------------------RAFNSNH 104 (231)
T ss_dssp EE-----------------------------------------------------------------------ECCSHHH
T ss_pred EE-----------------------------------------------------------------------ecCChHH
Confidence 21 1123333
Q ss_pred -HHHHHHHHHHhc-------CCcEEEEeCCCCCCCHHH------------HHHHHHHHHHHHHhCCcEEEEeecCCc---
Q 002833 348 -KKRVTTGEMLVG-------TANVLYMDEISTGLDSST------------TFQICKFLKQMVHILDVTMIVALLQPA--- 404 (875)
Q Consensus 348 -rkRVsIA~aLv~-------~p~iLlLDEPTsGLDs~t------------~~~i~~~L~~l~~~~~~tviisi~q~~--- 404 (875)
++.+..++.++. +|+++++||||++||+.. ..++++.|+++++..+.|+|++.|...
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g 184 (231)
T 4a74_A 105 QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGG 184 (231)
T ss_dssp HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC----
T ss_pred HHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcc
Confidence 233444444444 899999999999999841 237888888888777899999876332
Q ss_pred hhHHhhcCeEEEEeCCe
Q 002833 405 PETYDLFDDIILLSEGQ 421 (875)
Q Consensus 405 ~ei~~lfD~vilL~~G~ 421 (875)
..+...+|.+++|++|+
T Consensus 185 ~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 185 HILAHSATLRVYLRKGK 201 (231)
T ss_dssp -----CCSEEEEEEECT
T ss_pred hhhHhhceEEEEEEecC
Confidence 23677899999998753
No 91
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.65 E-value=1.1e-18 Score=204.54 Aligned_cols=172 Identities=17% Similarity=0.211 Sum_probs=117.0
Q ss_pred ccccccccceeE-EEeCCeEEEEEcCCCCCHHHHHHH--HhcCcCCCCCCccEEEECCEeCCCCc--cCceEEEEecCCC
Q 002833 181 KRSVRILKDVSG-IVKPSRMTLLLGPPGAGKTTLMLA--LAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDL 255 (875)
Q Consensus 181 ~~~~~IL~~vs~-~i~pGe~~~llGpnGSGKSTLLk~--LaG~l~~~~~~sG~I~~nG~~~~~~~--~~~~~~yv~Q~d~ 255 (875)
....++|++||+ .|++|++++|+||||||||||+++ ++|.++|+ +|.|+++|.+..... ..+.+||++|+..
T Consensus 22 ~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~---~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~ 98 (525)
T 1tf7_A 22 RTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD---EPGVFVTFEETPQDIIKNARSFGWDLAKLV 98 (525)
T ss_dssp CCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSSCHHHHHHHHGGGTCCHHHHH
T ss_pred cCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC---CCEEEEEEeCCHHHHHHHHHHcCCChHHhh
Confidence 345779999999 999999999999999999999999 78999876 899999998732111 1245788888632
Q ss_pred CCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccc
Q 002833 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335 (875)
Q Consensus 256 ~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v 335 (875)
..+ ++.+ .. .. +..+ ..++++.++|.+..+..+
T Consensus 99 ~~~------~l~~-~~---~~-------------------~~~~------------------~~~~l~~~~l~~~~~~~~ 131 (525)
T 1tf7_A 99 DEG------KLFI-LD---AS-------------------PDPE------------------GQEVVGGFDLSALIERIN 131 (525)
T ss_dssp HTT------SEEE-EE---CC-------------------CCSS------------------CCSCCSSHHHHHHHHHHH
T ss_pred ccC------cEEE-Ee---cC-------------------cccc------------------hhhhhcccCHHHHHHHHH
Confidence 111 1100 00 00 0000 000112222322223222
Q ss_pred cCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCC-----CCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchh----
Q 002833 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEIST-----GLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE---- 406 (875)
Q Consensus 336 g~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTs-----GLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~e---- 406 (875)
. .||||| |+++++||||+ +||+..+.++.+.++.+++ .|+|+|++.|.....
T Consensus 132 ~-----~LS~g~-------------~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~-~g~tvl~itH~~~~~~~~~ 192 (525)
T 1tf7_A 132 Y-----AIQKYR-------------ARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQ-IGATTVMTTERIEEYGPIA 192 (525)
T ss_dssp H-----HHHHHT-------------CSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHH-HTCEEEEEEECSSSSSCSS
T ss_pred H-----HHHHcC-------------CCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHH-CCCEEEEEecCCCCccccc
Confidence 2 266664 67899999998 5699999999999999987 489999988876542
Q ss_pred ----HHhhcCeEEEEeCCe
Q 002833 407 ----TYDLFDDIILLSEGQ 421 (875)
Q Consensus 407 ----i~~lfD~vilL~~G~ 421 (875)
...+||+|++|++|+
T Consensus 193 ~~~i~~~laD~vi~L~~~~ 211 (525)
T 1tf7_A 193 RYGVEEFVSDNVVILRNVL 211 (525)
T ss_dssp TTSCHHHHCSEEEEEEEEC
T ss_pred cccceeeeeeEEEEEEEEc
Confidence 345699999999844
No 92
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.64 E-value=4.4e-16 Score=190.15 Aligned_cols=104 Identities=27% Similarity=0.373 Sum_probs=91.6
Q ss_pred HHHHhCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHhcCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEE
Q 002833 321 VLKILGLDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLVGTA--NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMI 397 (875)
Q Consensus 321 iL~~lgL~~~-~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p--~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tvi 397 (875)
.|+.+||... .|..++. |||||||||.||++|..+| ++|+|||||+|||+.....+.+.|+++.+ .|.|+|
T Consensus 487 ~L~~vGL~~l~ldR~~~t-----LSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~-~G~TVI 560 (972)
T 2r6f_A 487 FLQNVGLDYLTLSRSAGT-----LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD-LGNTLI 560 (972)
T ss_dssp HHHHHTCTTSBSSSBGGG-----CCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHT-TTCEEE
T ss_pred HhhhCCCCccccCCcccc-----CCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHh-CCCEEE
Confidence 5889999864 6777764 9999999999999999984 99999999999999999999999999975 689999
Q ss_pred EeecCCchhHHhhcCeEEEE------eCCeEEEecChhhHH
Q 002833 398 VALLQPAPETYDLFDDIILL------SEGQIVYQGPRDNVL 432 (875)
Q Consensus 398 isi~q~~~ei~~lfD~vilL------~~G~iv~~Gp~~~~~ 432 (875)
++.|.. +..+.+|+|++| .+|++++.|+++++.
T Consensus 561 vVeHdl--~~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 561 VVEHDE--DTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp EECCCH--HHHHSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred EEecCH--HHHHhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 987764 345789999999 799999999998763
No 93
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.63 E-value=2.3e-17 Score=205.74 Aligned_cols=160 Identities=15% Similarity=0.130 Sum_probs=111.5
Q ss_pred ccccccceeEEEeC-------CeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEE-EEecCC
Q 002833 183 SVRILKDVSGIVKP-------SRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCA-YISQHD 254 (875)
Q Consensus 183 ~~~IL~~vs~~i~p-------Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~-yv~Q~d 254 (875)
...|++|+++.+++ |++++|+||||||||||||+| |++.+ ...+| ||||+.
T Consensus 768 ~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~--------------------~aqiG~~Vpq~~ 826 (1022)
T 2o8b_B 768 DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV--------------------MAQMGCYVPAEV 826 (1022)
T ss_dssp CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH--------------------HHTTTCCEESSE
T ss_pred CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH--------------------HhheeEEeccCc
Confidence 35699999999987 999999999999999999999 88753 11234 888874
Q ss_pred CCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCcccccc
Q 002833 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTM 334 (875)
Q Consensus 255 ~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 334 (875)
. .+||.|++.. + +|+.+..+.
T Consensus 827 ~---~l~v~d~I~~--r-----------------------------------------------------ig~~d~~~~- 847 (1022)
T 2o8b_B 827 C---RLTPIDRVFT--R-----------------------------------------------------LGASDRIMS- 847 (1022)
T ss_dssp E---EECCCSBEEE--E-----------------------------------------------------CC--------
T ss_pred C---CCCHHHHHHH--H-----------------------------------------------------cCCHHHHhh-
Confidence 2 4456554411 0 011110000
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHH-HHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCe
Q 002833 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTT-FQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (875)
Q Consensus 335 vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~-~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~ 413 (875)
....+|++++ ++++|++++++|+++|||||++|+|+... ..+...|+.+++..+.++|+++|.+ +.+..++|+
T Consensus 848 ----~~stf~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~-el~~~~~d~ 921 (1022)
T 2o8b_B 848 ----GESTFFVELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYH-SLVEDYSQN 921 (1022)
T ss_dssp ------CHHHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCH-HHHHHTSSC
T ss_pred ----chhhhHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHhCCc
Confidence 0113566555 59999999999999999999999999985 4467888888765588898887664 466678999
Q ss_pred EEEEeCCeEE--EecChh
Q 002833 414 IILLSEGQIV--YQGPRD 429 (875)
Q Consensus 414 vilL~~G~iv--~~Gp~~ 429 (875)
+.++ +|++. +.|+++
T Consensus 922 ~~v~-~g~~~~~~~~~~~ 938 (1022)
T 2o8b_B 922 VAVR-LGHMACMVENECE 938 (1022)
T ss_dssp SSEE-EEEEEEC------
T ss_pred ceee-cCeEEEEEecCcc
Confidence 9887 58887 556544
No 94
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.63 E-value=3.1e-18 Score=176.03 Aligned_cols=145 Identities=16% Similarity=0.102 Sum_probs=109.9
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCC--CCCCHHHHHHHhhh
Q 002833 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHH--GEMTVRETLDFSGR 271 (875)
Q Consensus 194 i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~--~~lTV~EtL~f~a~ 271 (875)
.++|++++|+||||||||||+++|+|++.+ .++|++|++.++ ..+|+.+++.+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 579999999999999999999999998743 478999998776 67899988765421
Q ss_pred hcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCCCHHH----
Q 002833 272 CLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQ---- 347 (875)
Q Consensus 272 ~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGe---- 347 (875)
. ++. .....+..+++.+++.+..+.++. .+|+||
T Consensus 61 ~--~~~-----------------------------------~~~~~~~~~l~~~~~~~~~~~~~~-----~~s~g~~~~~ 98 (211)
T 3asz_A 61 H--PDA-----------------------------------FDLALYLEHAQALLRGLPVEMPVY-----DFRAYTRSPR 98 (211)
T ss_dssp S--GGG-----------------------------------BCHHHHHHHHHHHHTTCCEEECCE-----ETTTTEECSS
T ss_pred C--hhh-----------------------------------hhHHHHHHHHHHHHcCCCcCCCcc-----cCcccCCCCC
Confidence 1 000 001123445677777766555443 488886
Q ss_pred HHHHHHHHHHhcCCcEEEEeCCCCC-------CCHHHHHHHHHHHHHHHHhCCcEEEEeecC
Q 002833 348 KKRVTTGEMLVGTANVLYMDEISTG-------LDSSTTFQICKFLKQMVHILDVTMIVALLQ 402 (875)
Q Consensus 348 rkRVsIA~aLv~~p~iLlLDEPTsG-------LDs~t~~~i~~~L~~l~~~~~~tviisi~q 402 (875)
+||++++++++.+|.++++||||++ ||+.+..++.+.+++..+..|.|++.+.|+
T Consensus 99 ~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~ 160 (211)
T 3asz_A 99 RTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQ 160 (211)
T ss_dssp CEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred eEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 4788999999999999999999999 999999999999988655557787766665
No 95
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.62 E-value=6.6e-16 Score=188.23 Aligned_cols=107 Identities=24% Similarity=0.305 Sum_probs=93.1
Q ss_pred HHHHHHHHhCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHhcCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCC
Q 002833 317 VTDYVLKILGLDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLVGTA--NVLYMDEISTGLDSSTTFQICKFLKQMVHILD 393 (875)
Q Consensus 317 ~~~~iL~~lgL~~~-~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p--~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~ 393 (875)
+++ .|+.+||.+. .+..+. .|||||||||.||++|..+| ++|+|||||+|||+.....+.+.|+++.+ .|
T Consensus 359 rl~-~L~~vGL~~l~l~r~~~-----tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~-~G 431 (842)
T 2vf7_A 359 RLD-VLLHLGLGYLGLDRSTP-----TLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKR-GG 431 (842)
T ss_dssp HHH-HHHHTTCTTSBTTCBGG-----GSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHT-TT
T ss_pred HHH-HHHhCCCCcCCccCCcC-----cCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHH-cC
Confidence 444 5789999865 676665 49999999999999999999 59999999999999999999999999975 58
Q ss_pred cEEEEeecCCchhHHhhcCeEEEE------eCCeEEEecChhhHH
Q 002833 394 VTMIVALLQPAPETYDLFDDIILL------SEGQIVYQGPRDNVL 432 (875)
Q Consensus 394 ~tviisi~q~~~ei~~lfD~vilL------~~G~iv~~Gp~~~~~ 432 (875)
.|+|++.|.. ++.+.+|+|++| .+|++++.|+++++.
T Consensus 432 ~TVIvVeHdl--~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~ 474 (842)
T 2vf7_A 432 NSLFVVEHDL--DVIRRADWLVDVGPEAGEKGGEILYSGPPEGLK 474 (842)
T ss_dssp CEEEEECCCH--HHHTTCSEEEEECSSSGGGCCSEEEEECGGGGG
T ss_pred CEEEEEcCCH--HHHHhCCEEEEeCCCcccCCCEEEEecCHHHHH
Confidence 8999987665 366789999999 799999999998763
No 96
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.61 E-value=9.6e-17 Score=171.63 Aligned_cols=133 Identities=15% Similarity=0.213 Sum_probs=98.4
Q ss_pred ccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHHH
Q 002833 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRE 264 (875)
Q Consensus 185 ~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 264 (875)
++|+++| +++|++++|+|||||||||||++|+|.++|. .+|+|.++|.++... .+...+++.|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~~~-~~~~~~~v~q~----------- 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYV-FKHKKSIVNQR----------- 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCCSC-CCCSSSEEEEE-----------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcceee-cCCcceeeeHH-----------
Confidence 5899999 8999999999999999999999999998762 279999998765321 12212222221
Q ss_pred HHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCCC
Q 002833 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (875)
Q Consensus 265 tL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLS 344 (875)
.+|++. ..+
T Consensus 79 -----------------------------------------------------------~~gl~~-----------~~l- 87 (261)
T 2eyu_A 79 -----------------------------------------------------------EVGEDT-----------KSF- 87 (261)
T ss_dssp -----------------------------------------------------------EBTTTB-----------SCH-
T ss_pred -----------------------------------------------------------HhCCCH-----------HHH-
Confidence 112211 012
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeC
Q 002833 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (875)
Q Consensus 345 GGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~ 419 (875)
|++||++|..+|+++++|||| |..+...++ +. +. .|.++++++|... +.+.+|++++|..
T Consensus 88 -----~~~la~aL~~~p~illlDEp~---D~~~~~~~l---~~-~~-~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 88 -----ADALRAALREDPDVIFVGEMR---DLETVETAL---RA-AE-TGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp -----HHHHHHHHHHCCSEEEESCCC---SHHHHHHHH---HH-HH-TTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred -----HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHH---HH-Hc-cCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 899999999999999999999 998876544 33 33 4889988888754 6788999888754
No 97
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.61 E-value=5e-17 Score=170.44 Aligned_cols=169 Identities=14% Similarity=0.117 Sum_probs=100.0
Q ss_pred cccce-eEEEeCCeEEEEEcCCCCCHHHHHHHHh--cCcCCCCCCccEEEECCEeCCCCcc--CceEEEEecCCCCCCCC
Q 002833 186 ILKDV-SGIVKPSRMTLLLGPPGAGKTTLMLALA--GKLGKDLRASGKITYCGHELNEFVP--QRTCAYISQHDLHHGEM 260 (875)
Q Consensus 186 IL~~v-s~~i~pGe~~~llGpnGSGKSTLLk~La--G~l~~~~~~sG~I~~nG~~~~~~~~--~~~~~yv~Q~d~~~~~l 260 (875)
.|+++ .+-|++|++++|+||||||||||+++|+ |...+. +|.+.+++........ .+.++|++|+....+.+
T Consensus 18 ~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 94 (251)
T 2ehv_A 18 GFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG---EPGVFVTLEERARDLRREMASFGWDFEKYEKEGKI 94 (251)
T ss_dssp TTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSE
T ss_pred hHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC---CeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCE
Confidence 34443 3489999999999999999999999999 663443 5667766643211100 12234444433222333
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccC
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (875)
++.+......... .. +. ... .
T Consensus 95 ~~~~~~~~~~~~~--------------------------------------------~~---~~-------~~~-----~ 115 (251)
T 2ehv_A 95 AIVDGVSSVVGLP--------------------------------------------SE---EK-------FVL-----E 115 (251)
T ss_dssp EEEC----------------------------------------------------------------------------
T ss_pred EEEEccccccccc--------------------------------------------cc---cc-------eec-----c
Confidence 3332221100000 00 00 000 0
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCC-----HHHHHHHHHHHHHHHHhCCcEEEEeecCCchhH--------
Q 002833 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLD-----SSTTFQICKFLKQMVHILDVTMIVALLQPAPET-------- 407 (875)
Q Consensus 341 rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLD-----s~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei-------- 407 (875)
...+.++..+......-..+|+++++||||++|| ......+.+.++.+.+ .|+|+|++.|... ++
T Consensus 116 ~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~-~g~tii~vtH~~~-~~~~~~~~~~ 193 (251)
T 2ehv_A 116 DRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLE-MGVTTILTTEAPD-PQHGKLSRYG 193 (251)
T ss_dssp --CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHH-HCCEEEEEECCC-----CCSSSSS
T ss_pred CcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHH-CCCeEEEEECCCC-CCcccccccC
Confidence 1133444444444444568999999999999998 6777778888888865 4899999877654 44
Q ss_pred -Hhhc-CeEEEEe
Q 002833 408 -YDLF-DDIILLS 418 (875)
Q Consensus 408 -~~lf-D~vilL~ 418 (875)
..+| |+|++|+
T Consensus 194 i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 194 IEEFIARGVIVLD 206 (251)
T ss_dssp CGGGGCSEEEEEE
T ss_pred hhhEeeeEEEEEe
Confidence 5788 9999995
No 98
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.59 E-value=7.3e-17 Score=176.22 Aligned_cols=149 Identities=14% Similarity=0.142 Sum_probs=108.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---------CceEEEEecCCCCCCCCCHHHHH
Q 002833 196 PSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---------QRTCAYISQHDLHHGEMTVRETL 266 (875)
Q Consensus 196 pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---------~~~~~yv~Q~d~~~~~lTV~EtL 266 (875)
+|++++|+||||||||||+++|+|+++|. +|+|.++|.+...... ++.++|++|+...+|.+||+|++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~---~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL---GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 79999999999999999999999999986 8999999998754321 23589999999888999999999
Q ss_pred HHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCCCHH
Q 002833 267 DFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGG 346 (875)
Q Consensus 267 ~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGG 346 (875)
.++.. .+. + . .+++..|+.+..+.. ++..
T Consensus 178 ~~~~~-~~~---------------------d-----------------~----~llDt~G~~~~~~~~--------~~eL 206 (304)
T 1rj9_A 178 QAMKA-RGY---------------------D-----------------L----LFVDTAGRLHTKHNL--------MEEL 206 (304)
T ss_dssp HHHHH-HTC---------------------S-----------------E----EEECCCCCCTTCHHH--------HHHH
T ss_pred HHHHh-CCC---------------------C-----------------E----EEecCCCCCCchHHH--------HHHH
Confidence 76521 000 0 0 012233443322222 4556
Q ss_pred HHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCC
Q 002833 347 QKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQP 403 (875)
Q Consensus 347 erkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~ 403 (875)
++||++|||+++.+|+.++| +||+.+..++++.++++.+..+.|+|+.+|.+
T Consensus 207 s~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 207 KKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp HHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEEEEECTT
T ss_pred HHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEEEEECCc
Confidence 69999999999999995444 56666666677777877765688888887754
No 99
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.59 E-value=7.3e-15 Score=167.91 Aligned_cols=75 Identities=19% Similarity=0.359 Sum_probs=66.5
Q ss_pred CCCCHHHHHHHHHHHHHh----cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEE
Q 002833 341 RGISGGQKKRVTTGEMLV----GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (875)
Q Consensus 341 rgLSGGerkRVsIA~aLv----~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vil 416 (875)
..||||||||++||++|+ .+|++++|||||++||+.....+.+.|+++.+ .+.++|++.|+ .+..+.||++++
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~~ii~th~--~~~~~~~d~~~~ 408 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLK--NTMFEKSDALVG 408 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSC--HHHHTTCSEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc-CCCEEEEEECC--HHHHHhCCEEEE
Confidence 349999999999999999 68999999999999999999999999999864 36788888776 467889999999
Q ss_pred Ee
Q 002833 417 LS 418 (875)
Q Consensus 417 L~ 418 (875)
|.
T Consensus 409 ~~ 410 (430)
T 1w1w_A 409 VY 410 (430)
T ss_dssp EE
T ss_pred EE
Confidence 96
No 100
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.58 E-value=4.7e-17 Score=177.63 Aligned_cols=157 Identities=15% Similarity=0.192 Sum_probs=83.1
Q ss_pred cccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcC-cCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCC
Q 002833 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK-LGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEM 260 (875)
Q Consensus 182 ~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~-l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~l 260 (875)
+++.+++++++.| +|+||||+|||||++.|+|. +.+. +| |.++|.++..-...+.++|++|.+.....+
T Consensus 9 ~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~---~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~l 78 (301)
T 2qnr_A 9 HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPE---RV-ISGAAEKIERTVQIEASTVEIEERGVKLRL 78 (301)
T ss_dssp ---------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEEC---CCEEE
T ss_pred CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCC---CC-cccCCcccCCcceEeeEEEEecCCCcccCc
Confidence 3467999999998 99999999999999999997 6664 78 888887764322235578999998888889
Q ss_pred CHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccC
Q 002833 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (875)
Q Consensus 261 TV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (875)
||.||+.++.... ..+. .....+++.+. .+. +.
T Consensus 79 tv~Dt~g~~~~~~-------------~~e~-----------------------~~~l~~~l~~~------~~~-----~~ 111 (301)
T 2qnr_A 79 TVVDTPGYGDAIN-------------CRDC-----------------------FKTIISYIDEQ------FER-----YL 111 (301)
T ss_dssp EEEEEC-----------------------------------------------CTTHHHHHHHH------HHH-----HH
T ss_pred chhhhhhhhhhcC-------------cHHH-----------------------HHHHHHHHHHH------HHH-----HH
Confidence 9999987753210 0000 00111211111 122 23
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHHhCCcEEEEeecCC
Q 002833 341 RGISGGQKKRVTTGEMLVGTANVLYMDEIST-GLDSSTTFQICKFLKQMVHILDVTMIVALLQP 403 (875)
Q Consensus 341 rgLSGGerkRVsIA~aLv~~p~iLlLDEPTs-GLDs~t~~~i~~~L~~l~~~~~~tviisi~q~ 403 (875)
+++|||||||+.+|++++ ++++||||+ |||+... +.++++.+..+.++|++-|+.
T Consensus 112 ~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl 167 (301)
T 2qnr_A 112 HDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADT 167 (301)
T ss_dssp HHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGG
T ss_pred HHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCC
Confidence 459999999999988875 999999998 5999873 566666554466677765543
No 101
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.58 E-value=5e-15 Score=181.49 Aligned_cols=105 Identities=26% Similarity=0.374 Sum_probs=92.1
Q ss_pred HHHHhCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHhcC--CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEE
Q 002833 321 VLKILGLDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLVGT--ANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMI 397 (875)
Q Consensus 321 iL~~lgL~~~-~dt~vg~~~~rgLSGGerkRVsIA~aLv~~--p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tvi 397 (875)
.|+.+||... .|..++. |||||||||.||++|..+ |++|+|||||+|||+.....+.+.|+++.+ .|.|+|
T Consensus 504 ~L~~vGL~~l~l~r~~~t-----LSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~-~G~TVI 577 (993)
T 2ygr_A 504 FLLDVGLEYLSLSRAAAT-----LSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRD-LGNTLI 577 (993)
T ss_dssp HHHHHTGGGSCTTCBGGG-----CCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEE
T ss_pred HHhhCCCCccccCCCccc-----CCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHH-cCCEEE
Confidence 4788999864 6776664 999999999999999998 589999999999999999999999999975 689999
Q ss_pred EeecCCchhHHhhcCeEEEE------eCCeEEEecChhhHHH
Q 002833 398 VALLQPAPETYDLFDDIILL------SEGQIVYQGPRDNVLE 433 (875)
Q Consensus 398 isi~q~~~ei~~lfD~vilL------~~G~iv~~Gp~~~~~~ 433 (875)
++.|.. +..+.+|+|++| .+|++++.|+++++.+
T Consensus 578 vVeHdl--~~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~ 617 (993)
T 2ygr_A 578 VVEHDE--DTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLR 617 (993)
T ss_dssp EECCCH--HHHHTCSEEEEECSSSGGGCCSCCEEECHHHHHH
T ss_pred EECCCH--HHHHhCCEEEEecCccccCCCEEEEeeCHHHhhh
Confidence 987764 346789999999 7999999999988754
No 102
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.58 E-value=6.3e-16 Score=190.13 Aligned_cols=146 Identities=14% Similarity=0.172 Sum_probs=99.8
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCH
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 262 (875)
...|++|||+.+++|++++|+||||||||||||++++..-.. ..|. +.+... +.+..-+..+..+.+
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a--q~g~----------~vpa~~-~~i~~~d~i~~~ig~ 725 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA--QIGS----------YVPAEE-ATIGIVDGIFTRMGA 725 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH--HHTC----------CBSSSE-EEEECCSEEEEEC--
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh--hcCc----------cccchh-hhhhHHHHHHHhCCh
Confidence 356899999999999999999999999999999998753210 0110 111111 112211222222222
Q ss_pred HHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCC
Q 002833 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (875)
Q Consensus 263 ~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (875)
.+++ .. ....
T Consensus 726 ~d~l-----------------------------------------------------------------~~-----~~st 735 (918)
T 3thx_B 726 ADNI-----------------------------------------------------------------YK-----GRST 735 (918)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred HHHH-----------------------------------------------------------------HH-----hHHH
Confidence 2211 11 1234
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHH-HHHHHHHHhCCcEEEEeecCCchhHHhhcCeE
Q 002833 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQIC-KFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (875)
Q Consensus 343 LSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~-~~L~~l~~~~~~tviisi~q~~~ei~~lfD~v 414 (875)
+|+|++|++.|+++ +.+|+++||||||+|||+.....+. ..++.+++..|.|+|+++|.+ ++.+++|+.
T Consensus 736 fs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~--el~~l~~~~ 805 (918)
T 3thx_B 736 FMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYP--PVCELEKNY 805 (918)
T ss_dssp HHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHT
T ss_pred hhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcH--HHHHHHhhc
Confidence 89999999999998 8999999999999999999999998 777888765689999998874 455666654
No 103
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.58 E-value=1.1e-16 Score=178.22 Aligned_cols=169 Identities=18% Similarity=0.185 Sum_probs=103.7
Q ss_pred ccccce-eEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc--CCCC-CCccE-EEECCEeCCCCccCceEEEEecCCCCCCC
Q 002833 185 RILKDV-SGIVKPSRMTLLLGPPGAGKTTLMLALAGKL--GKDL-RASGK-ITYCGHELNEFVPQRTCAYISQHDLHHGE 259 (875)
Q Consensus 185 ~IL~~v-s~~i~pGe~~~llGpnGSGKSTLLk~LaG~l--~~~~-~~sG~-I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~ 259 (875)
..|+++ +|.|++|++++|+||||||||||++.|++.. +|+. ...|+ |++++.+. + ..+.+++++|...+++.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~--~-~~~~i~~i~q~~~~~~~ 194 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--F-RPERIREIAQNRGLDPD 194 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC--C-CHHHHHHHHHTTTCCHH
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC--C-CHHHHHHHHHHcCCCHH
Confidence 356665 6899999999999999999999999999987 4430 11367 78877643 1 12345555665433332
Q ss_pred CCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCcc
Q 002833 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (875)
Q Consensus 260 lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (875)
++.||+.+...
T Consensus 195 -~v~~ni~~~~~-------------------------------------------------------------------- 205 (349)
T 1pzn_A 195 -EVLKHIYVARA-------------------------------------------------------------------- 205 (349)
T ss_dssp -HHGGGEEEEEC--------------------------------------------------------------------
T ss_pred -HHhhCEEEEec--------------------------------------------------------------------
Confidence 44444332210
Q ss_pred CCCCCHHHHHHHHHHHHHh-------cCCcEEEEeCCCCCCCHHH------------HHHHHHHHHHHHHhCCcEEEEee
Q 002833 340 RRGISGGQKKRVTTGEMLV-------GTANVLYMDEISTGLDSST------------TFQICKFLKQMVHILDVTMIVAL 400 (875)
Q Consensus 340 ~rgLSGGerkRVsIA~aLv-------~~p~iLlLDEPTsGLDs~t------------~~~i~~~L~~l~~~~~~tviisi 400 (875)
--|++|+|++.++++++ .+|+++++||||++||+.. ..++++.|+++++..+.|+|++.
T Consensus 206 --~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~ 283 (349)
T 1pzn_A 206 --FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTN 283 (349)
T ss_dssp --CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred --CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEc
Confidence 01345555555555555 7899999999999999852 46777888888887788998876
Q ss_pred cCCchhHHhhcCeEEEEeCCeEEEecCh
Q 002833 401 LQPAPETYDLFDDIILLSEGQIVYQGPR 428 (875)
Q Consensus 401 ~q~~~ei~~lfD~vilL~~G~iv~~Gp~ 428 (875)
|.. ...-..|++...+..|+++.++..
T Consensus 284 h~~-~~~~~~~~~~~~~~~G~~l~~~~~ 310 (349)
T 1pzn_A 284 QVQ-ARPDAFFGDPTRPIGGHILAHSAT 310 (349)
T ss_dssp ECC----------------CCCCCTTCS
T ss_pred ccc-cccccccCCccccCCcceEeecCc
Confidence 543 344345566677777877666553
No 104
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.58 E-value=4.2e-15 Score=145.44 Aligned_cols=82 Identities=20% Similarity=0.258 Sum_probs=71.2
Q ss_pred ccCCCCCHHHHHHHHHH------HHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhc
Q 002833 338 EMRRGISGGQKKRVTTG------EMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF 411 (875)
Q Consensus 338 ~~~rgLSGGerkRVsIA------~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lf 411 (875)
..+..|||||||||+|| ++|+.+|++++|||||+|||+.+...+.+.|+++.+. +.|+|++.|++ ++.++|
T Consensus 53 ~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiiivsH~~--~~~~~~ 129 (148)
T 1f2t_B 53 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDE--ELKDAA 129 (148)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGG-SSEEEEEESCG--GGGGGC
T ss_pred CChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHcc-CCEEEEEEChH--HHHHhC
Confidence 34556999999999876 8999999999999999999999999999999998754 78999988875 567899
Q ss_pred CeEEEE--eCCeE
Q 002833 412 DDIILL--SEGQI 422 (875)
Q Consensus 412 D~vilL--~~G~i 422 (875)
|++++| .+|..
T Consensus 130 d~ii~l~~~~g~s 142 (148)
T 1f2t_B 130 DHVIRISLENGSS 142 (148)
T ss_dssp SEEEEEEEETTEE
T ss_pred CEEEEEEcCCCeE
Confidence 999999 45643
No 105
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.57 E-value=4.1e-16 Score=189.09 Aligned_cols=132 Identities=17% Similarity=0.147 Sum_probs=97.8
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC-CCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCH
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG-KDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~-~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 262 (875)
..+++|+|+. |++++|+||||||||||||+|+|... +. .|.+. .. .+..+++++| +++.+|+
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~---~G~~v------pa--~~~~i~~v~~---i~~~~~~ 628 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQ---VGSFV------PA--EEAHLPLFDG---IYTRIGA 628 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHT---TTCCB------SS--SEEEECCCSE---EEEECCC
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcc---cCcee------eh--hccceeeHHH---hhccCCH
Confidence 4688999998 99999999999999999999999863 32 45431 11 1234666665 4555555
Q ss_pred HHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCC
Q 002833 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (875)
Q Consensus 263 ~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (875)
.|++. .+
T Consensus 629 ~d~l~-------------------------------------------------------------------------~g 635 (765)
T 1ewq_A 629 SDDLA-------------------------------------------------------------------------GG 635 (765)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHH-------------------------------------------------------------------------hc
Confidence 55442 14
Q ss_pred CCHHHHHHHHHHHHH--hcCCcEEEEeCC---CCCCCHHHH-HHHHHHHHHHHHhCCcEEEEeecCCchhHHhhc
Q 002833 343 ISGGQKKRVTTGEML--VGTANVLYMDEI---STGLDSSTT-FQICKFLKQMVHILDVTMIVALLQPAPETYDLF 411 (875)
Q Consensus 343 LSGGerkRVsIA~aL--v~~p~iLlLDEP---TsGLDs~t~-~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lf 411 (875)
+|+|+++++.+++++ +.+|++++|||| |++||..+. ..+++.|++ .+.|+|+++|.+ +..+++
T Consensus 636 ~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~----~g~~vl~~TH~~--~l~~~~ 704 (765)
T 1ewq_A 636 KSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE----RRAYTLFATHYF--ELTALG 704 (765)
T ss_dssp CSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH----HTCEEEEECCCH--HHHTCC
T ss_pred ccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh----CCCEEEEEeCCH--HHHHhh
Confidence 899999999999999 999999999999 999998875 578888876 378999988764 344454
No 106
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.57 E-value=5.7e-15 Score=152.54 Aligned_cols=172 Identities=15% Similarity=0.126 Sum_probs=109.8
Q ss_pred cccccceeE-EEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCH
Q 002833 184 VRILKDVSG-IVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (875)
Q Consensus 184 ~~IL~~vs~-~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 262 (875)
.+.|+++.+ .+++|++++|+||||||||||++.|++...+. .|.|.|.+.+. +.
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~~v~~~~~~~----------------------~~ 63 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRD---GDPCIYVTTEE----------------------SR 63 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHH---TCCEEEEESSS----------------------CH
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHC---CCeEEEEEccc----------------------CH
Confidence 457888885 89999999999999999999999999887543 55665543221 11
Q ss_pred HHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCC
Q 002833 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (875)
Q Consensus 263 ~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (875)
.+........ +.. +.. . . .......+...+.++ ...+ ...
T Consensus 64 ~~~~~~~~~~-~~~-------------------~~~-~---------~-~~~~~~~~~~~~~~~-----~~~~----~~~ 103 (235)
T 2w0m_A 64 DSIIRQAKQF-NWD-------------------FEE-Y---------I-EKKLIIIDALMKEKE-----DQWS----LVN 103 (235)
T ss_dssp HHHHHHHHHT-TCC-------------------CGG-G---------B-TTTEEEEECCC---------CTTB----CSS
T ss_pred HHHHHHHHHh-cch-------------------HHH-H---------h-hCCEEEEeccccccC-----ceee----ecC
Confidence 1111100000 000 000 0 0 000000000000111 0001 123
Q ss_pred CCHHHHHHHHHHHHHhcCCc--EEEEeCCCCCC--CHHHHHHHHHHHHHHHHhCCcEEEEeecCCc-------hhHHhhc
Q 002833 343 ISGGQKKRVTTGEMLVGTAN--VLYMDEISTGL--DSSTTFQICKFLKQMVHILDVTMIVALLQPA-------PETYDLF 411 (875)
Q Consensus 343 LSGGerkRVsIA~aLv~~p~--iLlLDEPTsGL--Ds~t~~~i~~~L~~l~~~~~~tviisi~q~~-------~ei~~lf 411 (875)
.|.+|.++...+.+...+|+ ++++||||+++ |+....++++.|+++++..+.|++++.|... +.+.++|
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~ 183 (235)
T 2w0m_A 104 LTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVA 183 (235)
T ss_dssp CCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHC
T ss_pred CCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheee
Confidence 59999988888877778999 99999999887 9999999999999998877889999877652 4588899
Q ss_pred CeEEEEeCC
Q 002833 412 DDIILLSEG 420 (875)
Q Consensus 412 D~vilL~~G 420 (875)
|+|++|+..
T Consensus 184 d~vi~l~~~ 192 (235)
T 2w0m_A 184 DGIIRFRRM 192 (235)
T ss_dssp SEEEEEEEE
T ss_pred eEEEEEEEE
Confidence 999999864
No 107
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.56 E-value=4.1e-17 Score=166.26 Aligned_cols=158 Identities=21% Similarity=0.206 Sum_probs=103.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc-cCceEEEEecCCCCCCCCCHHHHHHHhhhhcCC
Q 002833 197 SRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGV 275 (875)
Q Consensus 197 Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~EtL~f~a~~~~~ 275 (875)
|++++|+||||||||||+++|+|.++ + +| |.++|....+.. .++.++|++|+. ... ++++ ++..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~---~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~---~~~l---~~~~-- 65 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S---SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGT---RGPL---SRVG-- 65 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H---TT-CCCEEEECCEEETTSSEEEEEEEET--TSC---EEEE---EECC--
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c---CC-EEEcCEecchhHhhhceEEEEEEec--ccc---eehh---hccc--
Confidence 78999999999999999999999987 5 79 999998775432 257789999974 111 1111 0000
Q ss_pred cchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCc-cccccccCccCCCCCHHHHHHHHH-
Q 002833 276 GTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI-CADTMVGDEMRRGISGGQKKRVTT- 353 (875)
Q Consensus 276 ~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~~dt~vg~~~~rgLSGGerkRVsI- 353 (875)
++.+. ..+..+|. +...+|||||+++..
T Consensus 66 -------------------------------------------------~~~~~~~~~~~v~~-~~~~ls~~er~~~~~l 95 (189)
T 2i3b_A 66 -------------------------------------------------LEPPPGKRECRVGQ-YVVDLTSFEQLALPVL 95 (189)
T ss_dssp -------------------------------------------------CCCCSSSCCEESSS-SEECHHHHHTTTTTTT
T ss_pred -------------------------------------------------ccCCccccccccce-EEEcchHHHHHHHHHH
Confidence 00000 01123332 234599999998844
Q ss_pred HH---HHhcCCcEEEEeC--CCCCCCHHHHHHHHHHHHHHHHhCCcEEEE---eecCCchhHHhhcCeEEEEeCCeEEEe
Q 002833 354 GE---MLVGTANVLYMDE--ISTGLDSSTTFQICKFLKQMVHILDVTMIV---ALLQPAPETYDLFDDIILLSEGQIVYQ 425 (875)
Q Consensus 354 A~---aLv~~p~iLlLDE--PTsGLDs~t~~~i~~~L~~l~~~~~~tvii---si~q~~~ei~~lfD~vilL~~G~iv~~ 425 (875)
++ |+..+|++|++|| |+..+|......+.+.|+ . ..++|+ ++.|..+ ..+.|+|..+.+|+++.-
T Consensus 96 ~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~----~-~~~~ilgti~vsh~~~--~~~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 96 RNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS----T-PGTIILGTIPVPKGKP--LALVEEIRNRKDVKVFNV 168 (189)
T ss_dssp CCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH----C-SSCCEEEECCCCCSSC--CTTHHHHHTTCCSEEEEC
T ss_pred hhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh----C-CCcEEEEEeecCCCCc--hHHHHHHeecCCcEEEEe
Confidence 44 5789999999999 898899876555544443 2 334443 3324332 346788888888888764
Q ss_pred c
Q 002833 426 G 426 (875)
Q Consensus 426 G 426 (875)
.
T Consensus 169 ~ 169 (189)
T 2i3b_A 169 T 169 (189)
T ss_dssp C
T ss_pred C
Confidence 3
No 108
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.54 E-value=7.4e-15 Score=157.98 Aligned_cols=151 Identities=13% Similarity=0.142 Sum_probs=102.9
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHHHHHHHhhhh
Q 002833 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRC 272 (875)
Q Consensus 193 ~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~EtL~f~a~~ 272 (875)
-+++|++++|+||||||||||++.|++... .|++ +.|.+.. ....+.|+..++. .. .+. .++
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----~g~~-~~g~~~~---~~~~v~~~~~e~~------~~-~~~--~r~ 87 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-----GGPD-LLEVGEL---PTGPVIYLPAEDP------PT-AIH--HRL 87 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-----TCCC-TTCCCCC---CCCCEEEEESSSC------HH-HHH--HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----cCCC-cCCCccC---CCccEEEEECCCC------HH-HHH--HHH
Confidence 489999999999999999999999998654 4555 3354322 1346788876542 21 110 000
Q ss_pred cCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCCCHHHHHHHH
Q 002833 273 LGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVT 352 (875)
Q Consensus 273 ~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGerkRVs 352 (875)
...+ .. ......+.+++.+++.+..+..+ ..+|+||++++
T Consensus 88 ~~~g-----------------~~-----------------~~~~~~~~~~~~l~l~~~~~~~~-----~~ls~g~~~~i- 127 (279)
T 1nlf_A 88 HALG-----------------AH-----------------LSAEERQAVADGLLIQPLIGSLP-----NIMAPEWFDGL- 127 (279)
T ss_dssp HHHH-----------------TT-----------------SCHHHHHHHHHHEEECCCTTSCC-----CTTSHHHHHHH-
T ss_pred HHHH-----------------hh-----------------cChhhhhhccCceEEeecCCCCc-----ccCCHHHHHHH-
Confidence 0000 00 00112345677888877665544 45999998876
Q ss_pred HHHHHhcCCcEEEEeCCCC--CCCHHHH---HHHHHHHHHHHHhCCcEEEEeecCC
Q 002833 353 TGEMLVGTANVLYMDEIST--GLDSSTT---FQICKFLKQMVHILDVTMIVALLQP 403 (875)
Q Consensus 353 IA~aLv~~p~iLlLDEPTs--GLDs~t~---~~i~~~L~~l~~~~~~tviisi~q~ 403 (875)
++++.+|+++++||||+ ++|.... .++++.|+++++..++|+|++.|..
T Consensus 128 --~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~ 181 (279)
T 1nlf_A 128 --KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHAS 181 (279)
T ss_dssp --HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred --HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCC
Confidence 57888999999999999 9998544 8889999999876788998876654
No 109
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.52 E-value=8.7e-17 Score=191.45 Aligned_cols=167 Identities=17% Similarity=0.205 Sum_probs=108.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcCcCC-CCCCccEEEECCEeCCC------CccCceEEEEecCCCCCCCCCHHHHHHHhhhh
Q 002833 200 TLLLGPPGAGKTTLMLALAGKLGK-DLRASGKITYCGHELNE------FVPQRTCAYISQHDLHHGEMTVRETLDFSGRC 272 (875)
Q Consensus 200 ~~llGpnGSGKSTLLk~LaG~l~~-~~~~sG~I~~nG~~~~~------~~~~~~~~yv~Q~d~~~~~lTV~EtL~f~a~~ 272 (875)
++|+|||||||||||++|+|+..| + +|.|+++|.++.. ...++.++|++|+..+++.+||+|++.++...
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~~---sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~ 124 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPRG---SGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNA 124 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC----------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCCCC---CCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999877 4 9999999988521 12346789999999999999999999876432
Q ss_pred cCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCCCHHHHHHHH
Q 002833 273 LGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVT 352 (875)
Q Consensus 273 ~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGerkRVs 352 (875)
.+.. + .++| ++++.
T Consensus 125 ~~~~-------------------------------------------------~--------------~~~s---~~~i~ 138 (608)
T 3szr_A 125 IAGE-------------------------------------------------G--------------MGIS---HELIT 138 (608)
T ss_dssp HHCS-------------------------------------------------S--------------SCCC---SCCEE
T ss_pred hcCC-------------------------------------------------c--------------cccc---hHHHH
Confidence 1100 0 0011 01111
Q ss_pred HHHHHhcCCcEEEEeCC------CCCCCHHHHHHHHHHHHHHHHh-CCcEEEEeecCCc------hhHHhh-----cCeE
Q 002833 353 TGEMLVGTANVLYMDEI------STGLDSSTTFQICKFLKQMVHI-LDVTMIVALLQPA------PETYDL-----FDDI 414 (875)
Q Consensus 353 IA~aLv~~p~iLlLDEP------TsGLDs~t~~~i~~~L~~l~~~-~~~tviisi~q~~------~ei~~l-----fD~v 414 (875)
++......|+++++||| |+|||+....++.+.++++.+. .+.+++++.|... ..+.+. ...|
T Consensus 139 l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI 218 (608)
T 3szr_A 139 LEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTI 218 (608)
T ss_dssp EEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEE
T ss_pred HHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceE
Confidence 12222347999999999 9999999999999999997543 3455555544322 112222 2458
Q ss_pred EEEeCCeEEEecChhhHHHHH
Q 002833 415 ILLSEGQIVYQGPRDNVLEFF 435 (875)
Q Consensus 415 ilL~~G~iv~~Gp~~~~~~~F 435 (875)
+|+.++.++..|+.+++.+..
T Consensus 219 ~VlTK~Dlv~~g~~~~~~~~l 239 (608)
T 3szr_A 219 GILTKPDLVDKGTEDKVVDVV 239 (608)
T ss_dssp EEEECGGGSSSSSTTCCCCCC
T ss_pred EEecchhhcCcccHHHHHHHH
Confidence 899999998888776554433
No 110
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.52 E-value=2.5e-15 Score=183.20 Aligned_cols=157 Identities=13% Similarity=0.056 Sum_probs=105.7
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHH
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (875)
..+++|+|+. ++|++++|+||||||||||||+|+|..... ..| ..+.. ....++++.| +++.+++.
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~--q~G------~~vpa--~~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA--YIG------SYVPA--QKVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH--TTT------CCBSS--SEEEECCCCE---EEEEEC--
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH--hcC------cccch--hcccceeHHH---HHhhCCHH
Confidence 4689999999 999999999999999999999999974321 122 11111 0123455544 45555555
Q ss_pred HHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCC
Q 002833 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (875)
Q Consensus 264 EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (875)
|++..+ + ..+
T Consensus 661 d~l~~~---------------------------------------------------------~-------------stf 670 (800)
T 1wb9_A 661 DDLASG---------------------------------------------------------R-------------STF 670 (800)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHhh---------------------------------------------------------h-------------hhh
Confidence 554321 0 125
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHH-HHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCeE
Q 002833 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQI-CKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (875)
Q Consensus 344 SGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i-~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~i 422 (875)
|+|+++ +..+..++.+|++++||||++|+|+.....+ ...++.+.+..+.++|+++|.+ +..+++|++..+.+|++
T Consensus 671 ~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~--el~~l~d~~~~v~n~~~ 747 (800)
T 1wb9_A 671 MVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF--ELTQLPEKMEGVANVHL 747 (800)
T ss_dssp HHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHSTTEEEEEE
T ss_pred hHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCH--HHHHHhhhhhceEEEEE
Confidence 556554 4444456899999999999999999887776 6788888764588999998875 44568888877788877
Q ss_pred EEecC
Q 002833 423 VYQGP 427 (875)
Q Consensus 423 v~~Gp 427 (875)
.+...
T Consensus 748 ~~~~~ 752 (800)
T 1wb9_A 748 DALEH 752 (800)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 66543
No 111
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.41 E-value=3.9e-13 Score=138.01 Aligned_cols=78 Identities=13% Similarity=0.051 Sum_probs=60.3
Q ss_pred CCHHH--HHHHHHHHHHhcC-CcEEEEeCCCCCCCHH--------HHHHHHHHHHHHHHhCCcEEEEeecCCch------
Q 002833 343 ISGGQ--KKRVTTGEMLVGT-ANVLYMDEISTGLDSS--------TTFQICKFLKQMVHILDVTMIVALLQPAP------ 405 (875)
Q Consensus 343 LSGGe--rkRVsIA~aLv~~-p~iLlLDEPTsGLDs~--------t~~~i~~~L~~l~~~~~~tviisi~q~~~------ 405 (875)
.|+++ ++++..+++++.+ |+++++||||+++|.. ...++++.|+++++..+.|+|++.|....
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~ 164 (220)
T 2cvh_A 85 PSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMT 164 (220)
T ss_dssp CTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSC
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCcc
Confidence 44553 5688888899886 9999999999999973 33567777888888778888887665431
Q ss_pred ------hHHhhcCeEEEEeCC
Q 002833 406 ------ETYDLFDDIILLSEG 420 (875)
Q Consensus 406 ------ei~~lfD~vilL~~G 420 (875)
.+...+|.|++|+..
T Consensus 165 ~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 165 KPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CSCCCHHHHHTSSEEEEEEEC
T ss_pred ccCCCcceeecCcEEEEEEEe
Confidence 467899999999754
No 112
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.41 E-value=2.8e-14 Score=162.03 Aligned_cols=162 Identities=15% Similarity=0.141 Sum_probs=91.5
Q ss_pred HhhhccccCCcccccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEE
Q 002833 170 ALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAY 249 (875)
Q Consensus 170 ~l~~~~~~~~~~~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~y 249 (875)
.+.+.++...+ +.+.+++|+|+.| +|+||||||||||+++|+|...+... .|.+.+++.+ . ...+.++|
T Consensus 11 ~l~~~~l~~~y-~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~-~~~~~~~~~~--t-~~~~~i~~ 79 (418)
T 2qag_C 11 YVGFANLPNQV-YRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE-YPGPSHRIKK--T-VQVEQSKV 79 (418)
T ss_dssp ----CCCCCCT-TTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC-CCSCC-------C-CEEEEEEC
T ss_pred cEEEEecceeE-CCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC-CCCcccCCcc--c-eeeeeEEE
Confidence 34445554444 3467999999998 99999999999999999999764311 2222222111 0 11245789
Q ss_pred EecCCCCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCc
Q 002833 250 ISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI 329 (875)
Q Consensus 250 v~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~ 329 (875)
++|++..++.+||.||+.++..... .+ .. ....+++ +
T Consensus 80 v~q~~~~~~~Ltv~Dt~g~~~~~~~-------------~~---------~~--------------~~i~~~i-~------ 116 (418)
T 2qag_C 80 LIKEGGVQLLLTIVDTPGFGDAVDN-------------SN---------CW--------------QPVIDYI-D------ 116 (418)
T ss_dssp C------CEEEEEEECC---------------------------------C--------------HHHHHHH-H------
T ss_pred EEecCCcccceeeeechhhhhhccc-------------hh---------hH--------------HHHHHHH-H------
Confidence 9999888889999999877532110 00 00 0011111 1
Q ss_pred cccccccCccCCCCCHHHHHHHHHHHHHhcCCc---EEEEeCCC-CCCCHHHHHHHHHHHHHHHHhCCcEEEEeecC
Q 002833 330 CADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN---VLYMDEIS-TGLDSSTTFQICKFLKQMVHILDVTMIVALLQ 402 (875)
Q Consensus 330 ~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~---iLlLDEPT-sGLDs~t~~~i~~~L~~l~~~~~~tviisi~q 402 (875)
..++.+.+||+.||++++.+|+ +|++|||| .|||+... +.++.+.. +.++|++++.
T Consensus 117 -----------~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~--~v~iIlVinK 176 (418)
T 2qag_C 117 -----------SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE--KVNIIPLIAK 176 (418)
T ss_dssp -----------HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT--TSEEEEEEES
T ss_pred -----------HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc--cCcEEEEEEc
Confidence 0255677889999999999999 99999999 69998873 34455543 5677776654
No 113
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.40 E-value=1.6e-14 Score=150.46 Aligned_cols=150 Identities=16% Similarity=0.166 Sum_probs=97.2
Q ss_pred eEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCH----HHHH
Q 002833 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV----RETL 266 (875)
Q Consensus 191 s~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV----~EtL 266 (875)
.-..++|++++|+||||||||||+++|+|.++|+ ..+|.|.++|.+.... .++.++|++|++..|+.+|+ .|++
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-~~~g~v~~ttr~~~~~-e~~gi~y~fq~~~~f~~~~~~~~f~E~~ 87 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-DTQVSVSHTTRQPRPG-EVHGEHYFFVNHDEFKEMISRDAFLEHA 87 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTT-TEEECCCEECSCCCTT-CCBTTTBEECCHHHHHHHHHTTCEEEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-ceEEEEEecCCCCCcc-cccCceEEECCHHHHHHHHhcCHHHHHH
Confidence 3457999999999999999999999999998752 3589999998765432 23457899997554444444 2322
Q ss_pred HHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCCCHH
Q 002833 267 DFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGG 346 (875)
Q Consensus 267 ~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGG 346 (875)
.+..... |.|
T Consensus 88 ~~~~~~y--------------------------------------------------------------------g~~-- 97 (219)
T 1s96_A 88 EVFGNYY--------------------------------------------------------------------GTS-- 97 (219)
T ss_dssp EETTEEE--------------------------------------------------------------------EEE--
T ss_pred HHHhccC--------------------------------------------------------------------CCC--
Confidence 2211110 111
Q ss_pred HHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCeEEEec
Q 002833 347 QKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQG 426 (875)
Q Consensus 347 erkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~iv~~G 426 (875)
+++ .+.++..+++++|| ||+.++.++.+.+. .+.|++++.|++. ++.+ |+ +.+| .+
T Consensus 98 -~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~-----~~~tI~i~th~~~-~l~~---Rl--~~rG----~~ 153 (219)
T 1s96_A 98 -REA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP-----HARSIFILPPSKI-ELDR---RL--RGRG----QD 153 (219)
T ss_dssp -HHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-----TCEEEEEECSSHH-HHHH---HH--HTTS----CS
T ss_pred -HHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-----CCEEEEEECCCHH-HHHH---HH--HHcC----CC
Confidence 111 23344457999999 99999999998876 3678888765433 3333 42 6677 57
Q ss_pred ChhhHHHHHH
Q 002833 427 PRDNVLEFFE 436 (875)
Q Consensus 427 p~~~~~~~F~ 436 (875)
+.+++..-+.
T Consensus 154 ~~e~i~~rl~ 163 (219)
T 1s96_A 154 SEEVIAKRMA 163 (219)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 7777765543
No 114
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.40 E-value=2e-15 Score=152.24 Aligned_cols=139 Identities=16% Similarity=0.131 Sum_probs=88.9
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc-cCceEEEEecCCCCCCCCCHHHHHHHhhhh
Q 002833 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-PQRTCAYISQHDLHHGEMTVRETLDFSGRC 272 (875)
Q Consensus 194 i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~EtL~f~a~~ 272 (875)
+++|++++|+||||||||||+++|+|. ++ .|.|.++|.++.... ..+.++|++|+.. +.+||.|++.+.+..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~--~~---~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL--PG---VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGR 78 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC--SS---SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc--cC---CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHH
Confidence 679999999999999999999999998 33 799999997653221 1234567777533 456888888765321
Q ss_pred cCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccc--cccccCccCCCCCHHHHHH
Q 002833 273 LGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICA--DTMVGDEMRRGISGGQKKR 350 (875)
Q Consensus 273 ~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~--dt~vg~~~~rgLSGGerkR 350 (875)
.. ..... ..++.+++.+++.... +.. +..+|+|++||
T Consensus 79 ~~------------~~~~~------------------------~~~~~~~~~~~l~~~~~~~~~-----~~~ls~~~~~~ 117 (191)
T 1zp6_A 79 YA------------KEGYF------------------------VILDGVVRPDWLPAFTALARP-----LHYIVLRTTAA 117 (191)
T ss_dssp HH------------HTSCE------------------------EEECSCCCTTTTHHHHTTCSC-----EEEEEEECCHH
T ss_pred Hh------------ccCCe------------------------EEEeccCcHHHHHHHHhcCCC-----eEEEEecCCHH
Confidence 10 00000 0000001111111111 111 23499999999
Q ss_pred HHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 002833 351 VTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQM 388 (875)
Q Consensus 351 VsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l 388 (875)
+.++|++..+|+++ +|+.....+.+.++.+
T Consensus 118 v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l 147 (191)
T 1zp6_A 118 EAIERCLDRGGDSL--------SDPLVVADLHSQFADL 147 (191)
T ss_dssp HHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCC
T ss_pred HHHHHHHhcCCCcc--------CCHHHHHHHHHHHhcc
Confidence 99999999999876 6887777666666554
No 115
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.40 E-value=5.1e-14 Score=156.92 Aligned_cols=133 Identities=18% Similarity=0.266 Sum_probs=89.1
Q ss_pred cccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHHHH
Q 002833 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRET 265 (875)
Q Consensus 186 IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~Et 265 (875)
+|+++ .+.+|++++|+|||||||||||++|+|.+++. ..|.|...+.++ ++..+...+++.|......
T Consensus 114 ~l~~l--~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~--~~~~i~t~ed~~-e~~~~~~~~~v~q~~~~~~------- 181 (356)
T 3jvv_A 114 VFKRV--SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT--KYHHILTIEDPI-EFVHESKKCLVNQREVHRD------- 181 (356)
T ss_dssp HHHHH--HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH--CCCEEEEEESSC-CSCCCCSSSEEEEEEBTTT-------
T ss_pred HHHHH--HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC--CCcEEEEccCcH-Hhhhhccccceeeeeeccc-------
Confidence 45544 57899999999999999999999999998763 145664433332 2222222344444311000
Q ss_pred HHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCCCH
Q 002833 266 LDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISG 345 (875)
Q Consensus 266 L~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSG 345 (875)
.++-
T Consensus 182 ----------------------------------------------------------------------------~~~~ 185 (356)
T 3jvv_A 182 ----------------------------------------------------------------------------TLGF 185 (356)
T ss_dssp ----------------------------------------------------------------------------BSCH
T ss_pred ----------------------------------------------------------------------------cCCH
Confidence 0122
Q ss_pred HHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCC
Q 002833 346 GQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (875)
Q Consensus 346 GerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G 420 (875)
.+ +||++|..+|++|++|||| |..+...+. +.+. .|.++++++|... ..+.+||++.|..|
T Consensus 186 ~~----~La~aL~~~PdvillDEp~---d~e~~~~~~----~~~~-~G~~vl~t~H~~~--~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 186 SE----ALRSALREDPDIILVGEMR---DLETIRLAL----TAAE-TGHLVFGTLHTTS--AAKTIDRVVDVFPA 246 (356)
T ss_dssp HH----HHHHHTTSCCSEEEESCCC---SHHHHHHHH----HHHH-TTCEEEEEESCSS--HHHHHHHHHHTSCH
T ss_pred HH----HHHHHhhhCcCEEecCCCC---CHHHHHHHH----HHHh-cCCEEEEEEccCh--HHHHHHHHhhhcCc
Confidence 22 8999999999999999999 666544433 3343 5889888887765 33789999988654
No 116
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.39 E-value=1.7e-16 Score=177.55 Aligned_cols=163 Identities=17% Similarity=0.092 Sum_probs=97.8
Q ss_pred cccceeEEEeC--CeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCc----cEEEEC----CEeCCCCccC--ceEEEEecC
Q 002833 186 ILKDVSGIVKP--SRMTLLLGPPGAGKTTLMLALAGKLGKDLRAS----GKITYC----GHELNEFVPQ--RTCAYISQH 253 (875)
Q Consensus 186 IL~~vs~~i~p--Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~s----G~I~~n----G~~~~~~~~~--~~~~yv~Q~ 253 (875)
+.+.|+..|++ |+.++|+||||||||||+++|+|++++. + |+|.++ |.+. ..... +.++|++|+
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~---~~~e~G~i~i~~~~~~~~~-~~~~~~~~~I~~~~q~ 232 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT---SAWEYGREFVFEKLGGDEQ-AMQYSDYPQMALGHQR 232 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE---EECCTTHHHHHHSSSSCTT-SSCTTTHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC---cchhhHHHHHHhhcCCCcc-cCChhHHHHHHHHHHH
Confidence 56789999999 9999999999999999999999999885 6 777663 2221 10000 012222221
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccc
Q 002833 254 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (875)
Q Consensus 254 d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 333 (875)
...+ ..|+.||+.| +..+..++
T Consensus 233 ~~~~-~~t~~~nl~~---------------------------------------------------------~~~~~~~~ 254 (365)
T 1lw7_A 233 YIDY-AVRHSHKIAF---------------------------------------------------------IDTDFITT 254 (365)
T ss_dssp HHHH-HHHHCSSEEE---------------------------------------------------------ESSCHHHH
T ss_pred HHHH-HHhccCCEEE---------------------------------------------------------EeCCchHH
Confidence 0000 0011111100 00000111
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHh-cCCcEEEEeC---CC------CCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCC
Q 002833 334 MVGDEMRRGISGGQKKRVTTGEMLV-GTANVLYMDE---IS------TGLDSSTTFQICKFLKQMVHILDVTMIVALLQP 403 (875)
Q Consensus 334 ~vg~~~~rgLSGGerkRVsIA~aLv-~~p~iLlLDE---PT------sGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~ 403 (875)
. ...+|+|+++|..+++++. .+|++++||| |+ .++|...+..+.+.|+++.+..+.++++.. +|
T Consensus 255 ~-----~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ilild-e~ 328 (365)
T 1lw7_A 255 Q-----AFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIE-SP 328 (365)
T ss_dssp H-----HHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEE-CS
T ss_pred H-----HHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeC-CC
Confidence 1 1125677788888888775 5999999999 65 589999999999999988765567777765 44
Q ss_pred chhHHhhcCeEEEE
Q 002833 404 APETYDLFDDIILL 417 (875)
Q Consensus 404 ~~ei~~lfD~vilL 417 (875)
. +..+++|.+.+|
T Consensus 329 ~-~~~r~~~~i~~i 341 (365)
T 1lw7_A 329 S-YLDRYNQVKAVI 341 (365)
T ss_dssp S-HHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHH
Confidence 3 455556555444
No 117
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.38 E-value=4.4e-16 Score=157.27 Aligned_cols=170 Identities=11% Similarity=0.049 Sum_probs=108.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHHHHHHHhhhhcCCc
Q 002833 197 SRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVG 276 (875)
Q Consensus 197 Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~ 276 (875)
|++++|+||||||||||+++|++ +. +|.|.++|.++... ...++++|.....+.+|+++++.+.++...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~---~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 70 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QL---DNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFL-- 70 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HS---SSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHH--
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---cc---CCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHH--
Confidence 78999999999999999999997 22 78999998765432 234567776545556688888876543210
Q ss_pred chhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccC---ccCCCC--CHHHHHHH
Q 002833 277 TRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD---EMRRGI--SGGQKKRV 351 (875)
Q Consensus 277 ~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~---~~~rgL--SGGerkRV 351 (875)
.. +-....+...+. +..+.+ |+|++|++
T Consensus 71 ----------~~-------------------------------------~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~ 103 (189)
T 2bdt_A 71 ----------LA-------------------------------------QNDVVLDYIAFPDEAEALAQTVQAKVDDVEI 103 (189)
T ss_dssp ----------HT-------------------------------------TCEEEEESCCCHHHHHHHHHHHHHHCSSEEE
T ss_pred ----------hc-------------------------------------CCcEEEeeccCHHHHHHHHHHHHhcccCCCe
Confidence 00 000000000000 001124 88888888
Q ss_pred HHHH------HHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCeEEEe
Q 002833 352 TTGE------MLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQ 425 (875)
Q Consensus 352 sIA~------aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~iv~~ 425 (875)
.++. +++.+|+...+|+ |||+..... .+.++.+.. .+.++|.+.|....++.++||+|+ ++|+++.+
T Consensus 104 ~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~-~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~ 176 (189)
T 2bdt_A 104 RFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGI-DERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFC 176 (189)
T ss_dssp EEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTC-CTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC
T ss_pred EEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCC-CccEEEeCCCCChhhHHHHHHHHh--hCCcEEEe
Confidence 7777 8889998888884 899988777 777877743 467888876652457788899999 99999999
Q ss_pred cChhhH
Q 002833 426 GPRDNV 431 (875)
Q Consensus 426 Gp~~~~ 431 (875)
|+++-+
T Consensus 177 ~~~~~~ 182 (189)
T 2bdt_A 177 MAGDPL 182 (189)
T ss_dssp ------
T ss_pred ecCCch
Confidence 987654
No 118
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.38 E-value=3.1e-12 Score=128.27 Aligned_cols=89 Identities=22% Similarity=0.302 Sum_probs=70.0
Q ss_pred CCCCCHHHHHHHHHHHHHh----cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEE
Q 002833 340 RRGISGGQKKRVTTGEMLV----GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (875)
Q Consensus 340 ~rgLSGGerkRVsIA~aLv----~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vi 415 (875)
+..||||||||++||++|+ .+|++++|||||+|||+.+...+.+.|+++.+ +.++|++.|++ .+.+.+|+++
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~~ivith~~--~~~~~ad~i~ 137 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQFIVITLRD--VMMANADKII 137 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSCH--HHHTTCSEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCEEEEEEecH--HHHHhCCEEE
Confidence 4569999999999999997 45799999999999999999999999999864 45666666663 5788999999
Q ss_pred EEe--CCeE-EEecChhhHH
Q 002833 416 LLS--EGQI-VYQGPRDNVL 432 (875)
Q Consensus 416 lL~--~G~i-v~~Gp~~~~~ 432 (875)
.+. +|.. +.....++..
T Consensus 138 ~v~~~~g~s~~~~~~~~~~~ 157 (173)
T 3kta_B 138 GVSMRDGVSKVVSLSLEKAM 157 (173)
T ss_dssp EEEEETTEEEEEECCHHHHH
T ss_pred EEEecCCEEEEEEEEcHHHH
Confidence 664 5643 3334444433
No 119
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.38 E-value=9.2e-15 Score=149.08 Aligned_cols=66 Identities=12% Similarity=-0.046 Sum_probs=53.3
Q ss_pred HHHHHhCCCcc-ccccccCccCCCCCHHHHHH-HHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 002833 320 YVLKILGLDIC-ADTMVGDEMRRGISGGQKKR-VTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVH 390 (875)
Q Consensus 320 ~iL~~lgL~~~-~dt~vg~~~~rgLSGGerkR-VsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~ 390 (875)
..++..++... ..+++ ..+|+||||| +..+++++.+|.++++|||||++|.....++.+.|.++.+
T Consensus 131 ~~~~~~~~~~~~v~nK~-----D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 131 EWAVDSNIAVLVLLTKA-----DKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp HHHHHTTCCEEEEEECG-----GGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred HHHHHcCCCeEEEEecc-----cCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 34555666543 13333 3489999999 8999999999999999999999999999999999998865
No 120
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.35 E-value=3.1e-14 Score=140.78 Aligned_cols=78 Identities=22% Similarity=0.102 Sum_probs=66.1
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHH
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (875)
+.++++||+.+++|++++|+||||||||||+|+|+|.+ |. +|+|.++|.++......+ .|++|+..++ .+||.
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~---~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv~ 92 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GH---QGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLADP 92 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TC---CSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSCT
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CC---CCeEEECCEeeeeeccCC--Ccceeccccc-cCCcH
Confidence 46899999999999999999999999999999999999 75 899999998764211111 2789988777 89999
Q ss_pred HHHHH
Q 002833 264 ETLDF 268 (875)
Q Consensus 264 EtL~f 268 (875)
|++.+
T Consensus 93 e~l~~ 97 (158)
T 1htw_A 93 EELEF 97 (158)
T ss_dssp THHHH
T ss_pred HHHHH
Confidence 99965
No 121
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.35 E-value=2.8e-13 Score=151.48 Aligned_cols=136 Identities=16% Similarity=0.111 Sum_probs=95.3
Q ss_pred cccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc-cCceEEEEe-cCCCC--CCCCC
Q 002833 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-PQRTCAYIS-QHDLH--HGEMT 261 (875)
Q Consensus 186 IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~-~~~~~~yv~-Q~d~~--~~~lT 261 (875)
+++++|+.+++|++++|+||||||||||+++|+|.++++ +|.|+++|..--... .++.++|++ |++.. ++..|
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~---~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t 240 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD---QRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVT 240 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT---SCEEEEESSSCCCCTTCSSEEEEECC----------CC
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC---ceEEEECCccccCccccCCEEEEeecCccccccccccC
Confidence 449999999999999999999999999999999999986 999999985311111 246688888 65332 13334
Q ss_pred HHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCC
Q 002833 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (875)
Q Consensus 262 V~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (875)
++
T Consensus 241 ~~------------------------------------------------------------------------------ 242 (361)
T 2gza_A 241 AA------------------------------------------------------------------------------ 242 (361)
T ss_dssp HH------------------------------------------------------------------------------
T ss_pred HH------------------------------------------------------------------------------
Confidence 44
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeCCe
Q 002833 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (875)
Q Consensus 342 gLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~G~ 421 (875)
..|+.++..+|+.+++||+.. .++.+.|+.+... ..|++.++|... ....+||+..|..|.
T Consensus 243 ---------~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~~g-~~~~l~t~H~~~--~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 243 ---------TLLRSCLRMKPTRILLAELRG-------GEAYDFINVAASG-HGGSITSCHAGS--CELTFERLALMVLQN 303 (361)
T ss_dssp ---------HHHHHHTTSCCSEEEESCCCS-------THHHHHHHHHHTT-CCSCEEEEECSS--HHHHHHHHHHHHTTS
T ss_pred ---------HHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHhcC-CCeEEEEECCCC--HHHHHHHHHHHHhcc
Confidence 444445556788999999985 2345566666543 346677777653 667789998887764
No 122
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.33 E-value=1.3e-14 Score=152.98 Aligned_cols=160 Identities=18% Similarity=0.182 Sum_probs=97.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHh---cCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHHHHHHHhhhh
Q 002833 196 PSRMTLLLGPPGAGKTTLMLALA---GKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRC 272 (875)
Q Consensus 196 pGe~~~llGpnGSGKSTLLk~La---G~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~EtL~f~a~~ 272 (875)
++++++|+||||||||||+++|+ |...++ +|+|.++|.+... .....+.+++|+...++..|+.+++......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~---~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS---SGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE---HHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec---HHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999999 998775 8999888764321 1122345567777778888999999764321
Q ss_pred -cCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHH-Hhcch----hhhHHHHHHHHhCCCccccccccCccCCCCCHH
Q 002833 273 -LGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVA-VAGQE----TSLVTDYVLKILGLDICADTMVGDEMRRGISGG 346 (875)
Q Consensus 273 -~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGG 346 (875)
.+.+... .+. +.. .+.. +... ..... -....+.+ +....+..+ ..+||
T Consensus 102 ~~~~~~il------------~g~-~~~-~~~~-~~l~~~~~~~~vi~L~~~~~~~-----l~r~~~r~~-----~~lSg- 155 (246)
T 2bbw_A 102 RRGQHWLL------------DGF-PRT-LGQA-EALDKICEVDLVISLNIPFETL-----KDRLSRRWI-----HPPSG- 155 (246)
T ss_dssp CTTSCEEE------------ESC-CCS-HHHH-HHHHTTCCCCEEEEEECCHHHH-----HHHHHTEEE-----ETTTT-
T ss_pred cCCCeEEE------------ECC-CCC-HHHH-HHHHhhcCCCEEEEEECCHHHH-----HHHHHcCCC-----cCCCC-
Confidence 0000000 000 000 0000 0000 00000 00000001 111223333 34898
Q ss_pred HHHHHHHHHHH-hcCCcEEEEe----CCCCCCCHHHHHHHHHHHHHHHHh
Q 002833 347 QKKRVTTGEML-VGTANVLYMD----EISTGLDSSTTFQICKFLKQMVHI 391 (875)
Q Consensus 347 erkRVsIA~aL-v~~p~iLlLD----EPTsGLDs~t~~~i~~~L~~l~~~ 391 (875)
|| ++| +.+|++++|| |||+|||..+...+.+.|+.+.+.
T Consensus 156 ---rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~ 199 (246)
T 2bbw_A 156 ---RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDV 199 (246)
T ss_dssp ---EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred ---Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHHh
Confidence 66 677 9999999999 999999999999999999988653
No 123
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.31 E-value=3e-13 Score=153.26 Aligned_cols=172 Identities=17% Similarity=0.123 Sum_probs=105.7
Q ss_pred ccccccceeEEEeCCeE--EEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCC---ccCceEEEEecCCCCC
Q 002833 183 SVRILKDVSGIVKPSRM--TLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF---VPQRTCAYISQHDLHH 257 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~--~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~---~~~~~~~yv~Q~d~~~ 257 (875)
..+ |++||+.+++|++ ++|+||||||||||||+|+|..- .| .++... ...+.++|++|++.++
T Consensus 27 ~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-----~g------~~~~~~~~~~~~~~i~~v~Q~~~l~ 94 (427)
T 2qag_B 27 SLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-----EG------EPATHTQPGVQLQSNTYDLQESNVR 94 (427)
T ss_dssp --C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------------CCSSCEEEEEEEEEEC--CE
T ss_pred Cee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-----cC------CcCCCCCccceEeeEEEEeecCccc
Confidence 345 9999999999999 99999999999999999999841 22 222111 1235689999999888
Q ss_pred CCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHh-CCCc----ccc
Q 002833 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL-GLDI----CAD 332 (875)
Q Consensus 258 ~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l-gL~~----~~d 332 (875)
+.+||.||+.|+.... ....... +..++ ....+..|... ++.. ..|
T Consensus 95 ~~ltv~D~~~~g~~~~----~~~~~~~---------------i~~~i----------~~q~~~~L~e~~~i~r~l~~~~d 145 (427)
T 2qag_B 95 LKLTIVSTVGFGDQIN----KEDSYKP---------------IVEFI----------DAQFEAYLQEELKIRRVLHTYHD 145 (427)
T ss_dssp EEEEEEEEECCCC-CC----HHHHSHH---------------HHHHH----------HHHHHHHHHHC--CCCCCCCSCC
T ss_pred cccchhhhhhhhhccc----cchhhhH---------------HHHHH----------HHHHHHHHHHHHhhhhhhccccc
Confidence 8999999997764211 0000000 00011 11123333333 4432 123
Q ss_pred cc----cc--CccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHH-HHHhCCcEEEEe
Q 002833 333 TM----VG--DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQ-MVHILDVTMIVA 399 (875)
Q Consensus 333 t~----vg--~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~-l~~~~~~tviis 399 (875)
+. +. .+...+++-.+ +.|+++|..+++++++|||+..|.+.....+.+.+++ +.. .|..++..
T Consensus 146 ~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~-~gi~I~~i 215 (427)
T 2qag_B 146 SRIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVS-NGVQIYQF 215 (427)
T ss_dssp --CCEEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBT-TBCCCCCC
T ss_pred ccccEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHH-cCCcEEec
Confidence 22 11 11124577776 7899999999999999999999999999999888887 543 56665543
No 124
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.29 E-value=1.6e-12 Score=135.47 Aligned_cols=61 Identities=10% Similarity=0.162 Sum_probs=43.3
Q ss_pred cCCcEEEEeCCCCCCCHH-------H-----HHHHHHHHHHHHHhCCcEEEEeecCCchh-------------------H
Q 002833 359 GTANVLYMDEISTGLDSS-------T-----TFQICKFLKQMVHILDVTMIVALLQPAPE-------------------T 407 (875)
Q Consensus 359 ~~p~iLlLDEPTsGLDs~-------t-----~~~i~~~L~~l~~~~~~tviisi~q~~~e-------------------i 407 (875)
.+|+++++|||++.+|+. . ..++++.|+++++..+.|+|++.|.. .+ +
T Consensus 118 ~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~-~~~~~~~~~~~~~~~~~g~~~~ 196 (243)
T 1n0w_A 118 SRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVV-AQVDGAAMFAADPKKPIGGNII 196 (243)
T ss_dssp SCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC--------------------------
T ss_pred CCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeee-ecCCCccccCCCcccCCccChh
Confidence 589999999999999975 3 45677778888877788988876532 22 2
Q ss_pred HhhcCeEEEEeCC
Q 002833 408 YDLFDDIILLSEG 420 (875)
Q Consensus 408 ~~lfD~vilL~~G 420 (875)
..++|.+++|+.|
T Consensus 197 ~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 197 AHASTTRLYLRKG 209 (243)
T ss_dssp CCTTCEEEEEEEC
T ss_pred hhcCcEEEEEEEc
Confidence 2379999999865
No 125
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.28 E-value=6.3e-13 Score=149.13 Aligned_cols=132 Identities=17% Similarity=0.256 Sum_probs=94.9
Q ss_pred ccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHHH
Q 002833 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRE 264 (875)
Q Consensus 185 ~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 264 (875)
.+|++++ +++|++++|+|||||||||||++|+|.+++. .+|+|.+.|.++. +..++.++|++|..
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~~e~~~e-~~~~~~~~~v~Q~~---------- 190 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIE-YVFKHKKSIVNQRE---------- 190 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEEEESSCC-SCCCCSSSEEEEEE----------
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEEecccHh-hhhccCceEEEeee----------
Confidence 3678776 7999999999999999999999999998762 2699988776653 33345567777741
Q ss_pred HHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCCC
Q 002833 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (875)
Q Consensus 265 tL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLS 344 (875)
+|++. ..+
T Consensus 191 ------------------------------------------------------------~g~~~-----------~~~- 198 (372)
T 2ewv_A 191 ------------------------------------------------------------VGEDT-----------KSF- 198 (372)
T ss_dssp ------------------------------------------------------------BTTTB-----------SCS-
T ss_pred ------------------------------------------------------------cCCCH-----------HHH-
Confidence 01100 013
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEe
Q 002833 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (875)
Q Consensus 345 GGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~ 418 (875)
+.+|+++|..+|+++++|||+ |..+... .++.. ..|.++++++|.. ++.+.+|+++.|.
T Consensus 199 -----~~~l~~~L~~~pd~illdE~~---d~e~~~~---~l~~~--~~g~~vi~t~H~~--~~~~~~~rl~~l~ 257 (372)
T 2ewv_A 199 -----ADALRAALREDPDVIFVGEMR---DLETVET---ALRAA--ETGHLVFGTLHTN--TAIDTIHRIVDIF 257 (372)
T ss_dssp -----HHHHHHHTTSCCSEEEESCCC---SHHHHHH---HHHHH--TTTCEEEECCCCC--SHHHHHHHHHHTS
T ss_pred -----HHHHHHHhhhCcCEEEECCCC---CHHHHHH---HHHHH--hcCCEEEEEECcc--hHHHHHHHHHHhc
Confidence 468999999999999999999 7766444 34432 3477887777653 3677788876663
No 126
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.28 E-value=1.9e-13 Score=156.81 Aligned_cols=81 Identities=16% Similarity=0.180 Sum_probs=69.1
Q ss_pred ccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc---------cCceEEEEecCCCCC
Q 002833 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---------PQRTCAYISQHDLHH 257 (875)
Q Consensus 187 L~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~---------~~~~~~yv~Q~d~~~ 257 (875)
-+++|+.+++|++++|+||||||||||+++|+|++++. +|+|.++|.+..... .++.++|++|+...+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 46899999999999999999999999999999999875 899999887654320 134689999998888
Q ss_pred CCCCHHHHHHHhh
Q 002833 258 GEMTVRETLDFSG 270 (875)
Q Consensus 258 ~~lTV~EtL~f~a 270 (875)
+.+||++++.++.
T Consensus 360 p~~tV~e~l~~a~ 372 (503)
T 2yhs_A 360 SASVIFDAIQAAK 372 (503)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8899999998864
No 127
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.27 E-value=9.7e-15 Score=160.44 Aligned_cols=156 Identities=15% Similarity=0.135 Sum_probs=100.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCc--------CCCCCCccEEEECCEeCCCCcc------------------CceEEEE-
Q 002833 198 RMTLLLGPPGAGKTTLMLALAGKL--------GKDLRASGKITYCGHELNEFVP------------------QRTCAYI- 250 (875)
Q Consensus 198 e~~~llGpnGSGKSTLLk~LaG~l--------~~~~~~sG~I~~nG~~~~~~~~------------------~~~~~yv- 250 (875)
++++|+|+||||||||||.|.|.. .++ .|+|.++|.++..... .+.++++
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d---~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~ 81 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENE---FGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLL 81 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSS---CCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEec---CcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHH
Confidence 689999999999999999999986 444 8999999988754321 1234555
Q ss_pred --ecCCCCCCCCCHHHHHHHhhhhcCCcchhHHHHHH-HHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCC
Q 002833 251 --SQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAEL-SRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGL 327 (875)
Q Consensus 251 --~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL 327 (875)
+|+...+++.+|.||..++... .+...+ ...+. .....++.++..+++
T Consensus 82 ~~~q~~~~~~~~~v~E~~~l~~p~-------~~~~~~~~~~~~----------------------~~~~~l~~~l~~vd~ 132 (318)
T 1nij_A 82 DNLDKGNIQFDRLVIECTGMADPG-------PIIQTFFSHEVL----------------------CQRYLLDGVIALVDA 132 (318)
T ss_dssp HHHHHTSCCCSEEEEEEETTCCHH-------HHHHHHHHSHHH----------------------HHHEEEEEEEEEEET
T ss_pred hHHhcCCCCCCEEEEeCCCCCCHH-------HHHHHHhcCccc----------------------cCeEEECCEEEEEEH
Confidence 4665556677777776553110 000000 00000 000011223334455
Q ss_pred CccccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCc
Q 002833 328 DICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPA 404 (875)
Q Consensus 328 ~~~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~ 404 (875)
.+..+... .+|+||+||+..+++++.+|+++ ||| .++.+.|+++. .+.+++++.|.+.
T Consensus 133 ~~~~~~~~------~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~--~~~~ii~~sh~~~ 190 (318)
T 1nij_A 133 VHADEQMN------QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN--ARAPVYTVTHGDI 190 (318)
T ss_dssp TTHHHHHH------HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC--SSSCEEECCSSCC
T ss_pred HHHHHHHh------hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC--CCCeEEEecccCC
Confidence 44444433 38999999998888888888887 888 67888888875 4788888877654
No 128
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.24 E-value=5.9e-14 Score=140.61 Aligned_cols=138 Identities=18% Similarity=0.179 Sum_probs=84.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc------cC-ceEE----EEecCCCCCCCCCHHHHH
Q 002833 198 RMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQ-RTCA----YISQHDLHHGEMTVRETL 266 (875)
Q Consensus 198 e~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~------~~-~~~~----yv~Q~d~~~~~lTV~EtL 266 (875)
++++|+|+||||||||+++|+|.+++.....|.|.++|.++.+.. .+ +.++ +++|+..++ +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 579999999999999999999999874333799999998854432 11 2345 777765544 110
Q ss_pred HHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCCCHH
Q 002833 267 DFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGG 346 (875)
Q Consensus 267 ~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGG 346 (875)
+ .. +. . ...+++++. .|. ..||.+++ ++|||
T Consensus 77 -------~--~~-----~~-----~------------------------a~l~~~i~~-~l~-g~dt~i~E----glSgG 107 (171)
T 2f1r_A 77 -------V--SE-----EE-----G------------------------NDLDWIYER-YLS-DYDLVITE----GFSKA 107 (171)
T ss_dssp -------C--CH-----HH-----H------------------------TCHHHHHHH-HTT-TCSEEEEE----SCGGG
T ss_pred -------C--Ch-----hh-----h------------------------hCHHHHHHh-hCC-CCCEEEEC----CcCCC
Confidence 0 00 00 0 012334443 023 47899987 59999
Q ss_pred HHHHHHHHHHHhcCCcEE-------EEeCCCCC---CCHHHHHHHHHHHHHHHH
Q 002833 347 QKKRVTTGEMLVGTANVL-------YMDEISTG---LDSSTTFQICKFLKQMVH 390 (875)
Q Consensus 347 erkRVsIA~aLv~~p~iL-------lLDEPTsG---LDs~t~~~i~~~L~~l~~ 390 (875)
||||++|||+++.+|++. .-|.|..+ +|......+.+.+.+...
T Consensus 108 q~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~~i~~~~~ 161 (171)
T 2f1r_A 108 GKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAEFILSLLR 161 (171)
T ss_dssp CCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHHHHHHHHT
T ss_pred CCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHHHHHHHHHHh
Confidence 999999999999998773 23444322 334455677777766554
No 129
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.23 E-value=1.8e-12 Score=143.98 Aligned_cols=122 Identities=16% Similarity=0.085 Sum_probs=82.3
Q ss_pred cccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC-CCCCCccEEEEC-CEeCCCCccCceEEEEecCCCCCCCCCHH
Q 002833 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG-KDLRASGKITYC-GHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (875)
Q Consensus 186 IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~-~~~~~sG~I~~n-G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (875)
-+++++.. .+|++++|+||||||||||+|+|+|... +. +|+|.++ |.+... ...+.++|++|+..++++.||+
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~---~G~I~~~~G~g~~t-t~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEIL---TNDVSNVSGLGQHT-TTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCC---CC--------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccc---cCCccccCCCCccc-eEEEEEEEECCCCEecCcccHH
Confidence 45666664 4899999999999999999999999998 75 9999987 765432 2346789999998889999999
Q ss_pred HHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCC
Q 002833 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (875)
Q Consensus 264 EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (875)
|+ .. .+.. +.+ ......++++.+|+.+..|..+. ++
T Consensus 280 e~---~l--~~l~----------~~e------------------------~~~~~~e~l~~~gl~~f~~~~~~-----~l 315 (358)
T 2rcn_A 280 EF---GL--WHLE----------PEQ------------------------ITQGFVEFHDYLGHCKYRDCKHD-----AD 315 (358)
T ss_dssp TC---CC--CCCC----------HHH------------------------HHHTSGGGGGGTTCSSSTTCCSS-----SC
T ss_pred Hh---hh--cCCC----------HHH------------------------HHHHHHHHHHHcCCchhcCCCcc-----cC
Confidence 83 21 1110 000 01123456778899887777665 49
Q ss_pred CHHHHHHHHHHHHH
Q 002833 344 SGGQKKRVTTGEML 357 (875)
Q Consensus 344 SGGerkRVsIA~aL 357 (875)
| ||+||++||+++
T Consensus 316 S-G~~~r~ala~gl 328 (358)
T 2rcn_A 316 P-GCAIREAVENGA 328 (358)
T ss_dssp T-TCHHHHHHHHTS
T ss_pred C-HHHHHHHHHhcC
Confidence 9 999999999764
No 130
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.22 E-value=2.7e-12 Score=141.53 Aligned_cols=164 Identities=13% Similarity=0.136 Sum_probs=106.4
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---------CceEEEEecCCCCCCCCCHHH
Q 002833 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---------QRTCAYISQHDLHHGEMTVRE 264 (875)
Q Consensus 194 i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---------~~~~~yv~Q~d~~~~~lTV~E 264 (875)
.++|++++|+||||||||||++.|+|.+++. +|+|.++|.+...... +..+.+++|.....|.+||+|
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~---~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e 202 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNH---GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYD 202 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhc---CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHH
Confidence 3789999999999999999999999999886 8999999998754321 123569999999999999999
Q ss_pred HHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCCC
Q 002833 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (875)
Q Consensus 265 tL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLS 344 (875)
++.++.... .. .. +++..|+.+..+..+ +.||
T Consensus 203 ~l~~~~~~~-~d--------------------------------------~v----liDtaG~~~~~~~l~-----~eL~ 234 (328)
T 3e70_C 203 AIQHAKARG-ID--------------------------------------VV----LIDTAGRSETNRNLM-----DEMK 234 (328)
T ss_dssp HHHHHHHHT-CS--------------------------------------EE----EEEECCSCCTTTCHH-----HHHH
T ss_pred HHHHHHhcc-ch--------------------------------------hh----HHhhccchhHHHHHH-----HHHH
Confidence 998753210 00 00 011123322221111 1233
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCch--------hHHhhcCeEEE
Q 002833 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAP--------ETYDLFDDIIL 416 (875)
Q Consensus 345 GGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~--------ei~~lfD~vil 416 (875)
.+++++..++.+++||.+| | .++++.++.+.+..+.|.|+.++-+.. -.....--|..
T Consensus 235 -------~i~ral~~de~llvLDa~t-~------~~~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~ 300 (328)
T 3e70_C 235 -------KIARVTKPNLVIFVGDALA-G------NAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILF 300 (328)
T ss_dssp -------HHHHHHCCSEEEEEEEGGG-T------THHHHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEE
T ss_pred -------HHHHHhcCCCCEEEEecHH-H------HHHHHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEE
Confidence 3778887777777777444 3 466677777776678888887664321 12233345666
Q ss_pred EeCCeE
Q 002833 417 LSEGQI 422 (875)
Q Consensus 417 L~~G~i 422 (875)
+..|+-
T Consensus 301 i~~Ge~ 306 (328)
T 3e70_C 301 VGVGQG 306 (328)
T ss_dssp EECSSS
T ss_pred EeCCCC
Confidence 666654
No 131
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.21 E-value=1.3e-12 Score=141.71 Aligned_cols=134 Identities=16% Similarity=0.199 Sum_probs=85.1
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHHHHHHHhhhhcC
Q 002833 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLG 274 (875)
Q Consensus 195 ~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~EtL~f~a~~~~ 274 (875)
+++.+++|.||+|||||||.+.|++.+.+ .|. ..+.+.+|+|++.+++. ++++++.++..-.+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~----~g~------------~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~ 91 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME----KYG------------GEKSIGYASIDDFYLTH-EDQLKLNEQFKNNK 91 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH----HHG------------GGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh----cCC------------CCceEEEeccccccCCh-HHHHHHhccccccc
Confidence 46889999999999999999999999865 230 13445666999988865 88999887531000
Q ss_pred CcchhHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHhcchhhhHHHHHHHHhCCC--c--cccccccCccCCCCCHHHHH
Q 002833 275 VGTRYELLAELSRREKQAGIKPD-PEIDAFMKAVAVAGQETSLVTDYVLKILGLD--I--CADTMVGDEMRRGISGGQKK 349 (875)
Q Consensus 275 ~~~~~~~~~~l~~~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~--~--~~dt~vg~~~~rgLSGGerk 349 (875)
.- .. .+ .|+ .+.+ .....++.+.-. . .....+. .+-..+||||+|
T Consensus 92 l~---------~~----~g-~p~a~d~~---------------~l~~~l~~l~~g~~t~~~~~v~~p-~y~~~~sgGq~~ 141 (290)
T 1odf_A 92 LL---------QG----RG-LPGTHDMK---------------LLQEVLNTIFNNNEHPDQDTVVLP-KYDKSQFKGEGD 141 (290)
T ss_dssp GG---------SS----SC-STTSBCHH---------------HHHHHHHHHTC------CCEEEEC-CEETTHHHHTCE
T ss_pred hh---------hh----cc-CcchhHHH---------------HHHHHHHHhhccCccccCcceeec-cCccccCCcccc
Confidence 00 00 00 011 1111 122344444321 0 0111111 233679999999
Q ss_pred HHHHH--HHHhcCCcEEEEeCCCCCCCHHH
Q 002833 350 RVTTG--EMLVGTANVLYMDEISTGLDSST 377 (875)
Q Consensus 350 RVsIA--~aLv~~p~iLlLDEPTsGLDs~t 377 (875)
|+.+| +++ +|+|+|+||+++|||+..
T Consensus 142 R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 142 RCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp ECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred ccccccceEc--CCCEEEEeCccccCCccc
Confidence 99997 555 999999999999999864
No 132
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.20 E-value=8.7e-13 Score=149.71 Aligned_cols=170 Identities=13% Similarity=0.136 Sum_probs=102.6
Q ss_pred ccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHHHHH
Q 002833 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETL 266 (875)
Q Consensus 187 L~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~EtL 266 (875)
-+++++.+++|+.++|+|+|||||||||++|+|..+ .+.+.+.... ...++++.+++. ..+++.++.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~---------~i~~~~ftTl--~p~~G~V~~~~~--~~~~l~Dtp 213 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP---------KIAPYPFTTL--SPNLGVVEVSEE--ERFTLADIP 213 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC---------EECCCTTCSS--CCEEEEEECSSS--CEEEEEECC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc---------cccCccccee--cceeeEEEecCc--ceEEEEecc
Confidence 479999999999999999999999999999999742 2333333322 234566665541 112222221
Q ss_pred HH---hhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCC
Q 002833 267 DF---SGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (875)
Q Consensus 267 ~f---~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (875)
-+ +....+.+.. +.+ +...++.++..+++. +.. ...+
T Consensus 214 Gli~~a~~~~~L~~~------------------------fl~--------~~era~~lL~vvDls---~~~-----~~~l 253 (416)
T 1udx_A 214 GIIEGASEGKGLGLE------------------------FLR--------HIARTRVLLYVLDAA---DEP-----LKTL 253 (416)
T ss_dssp CCCCCGGGSCCSCHH------------------------HHH--------HHTSSSEEEEEEETT---SCH-----HHHH
T ss_pred ccccchhhhhhhhHH------------------------HHH--------HHHHHHhhhEEeCCc---cCC-----HHHH
Confidence 11 0000111000 000 000112233344443 222 3359
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeE
Q 002833 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (875)
Q Consensus 344 SGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~v 414 (875)
|+|++|++.++++|+..|.++++ +++|.... ..++.+++..+..+.+++.+.......+.++++.+
T Consensus 254 s~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 254 ETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp HHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 99999999999999999999999 99999877 55566655555456677766555455565555543
No 133
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.19 E-value=2e-13 Score=151.26 Aligned_cols=181 Identities=15% Similarity=0.103 Sum_probs=110.0
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc-------cCceEEEEecCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-------PQRTCAYISQHDLH 256 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~-------~~~~~~yv~Q~d~~ 256 (875)
..+|+++|+.+++|++++|+||||||||||+++|+|.+.+. +|+|.+.|.++.... .++.++|++|++..
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~---~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~ 118 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA---GHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNA 118 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTE
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC---CCEEEEEEEcCcccccccchHHHhhhheeeccCccc
Confidence 46999999999999999999999999999999999999886 899999998874321 23568999998877
Q ss_pred CCCC------------CHHHHHHHhhhhc--------CCcchhHHHHHHHHHHHhcCC-----CCChhHHHHHHHHHHhc
Q 002833 257 HGEM------------TVRETLDFSGRCL--------GVGTRYELLAELSRREKQAGI-----KPDPEIDAFMKAVAVAG 311 (875)
Q Consensus 257 ~~~l------------TV~EtL~f~a~~~--------~~~~~~~~~~~l~~~e~~~~~-----~~~~~~~~~~~~~~~~~ 311 (875)
++.. +++|.+... ... .+|.+.. +..- +....+ .+.. .+.. + .
T Consensus 119 ~~~~~~~~~~l~G~tr~~~e~~~~~-~~~~~~~iliDT~Gi~~~---~~~v-~~~~d~vl~v~d~~~-~~~~-~-----~ 186 (337)
T 2qm8_A 119 FIRPSPSSGTLGGVAAKTRETMLLC-EAAGFDVILVETVGVGQS---ETAV-ADLTDFFLVLMLPGA-GDEL-Q-----G 186 (337)
T ss_dssp EEECCCCCSSHHHHHHHHHHHHHHH-HHTTCCEEEEEECSSSSC---HHHH-HTTSSEEEEEECSCC-------------
T ss_pred ccccCcccccccchHHHHHHHHHHH-hcCCCCEEEEECCCCCcc---hhhH-HhhCCEEEEEEcCCC-cccH-H-----H
Confidence 6532 233333110 000 0110000 0000 000000 0000 0000 0 0
Q ss_pred chhhhHHHHHHHHhCCCccccccccCccCCCCCHHHHHHHHHHHHHhc------CCcEEEEeCCCCCCCHHHHHHHHHHH
Q 002833 312 QETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG------TANVLYMDEISTGLDSSTTFQICKFL 385 (875)
Q Consensus 312 ~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGerkRVsIA~aLv~------~p~iLlLDEPTsGLDs~t~~~i~~~L 385 (875)
......++...+.+ +..|.. ..+.+|+|++|++..+.+++. .|++++ +|++|.....++.+.|
T Consensus 187 --i~~~i~~~~~ivvl-NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I 255 (337)
T 2qm8_A 187 --IKKGIFELADMIAV-NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRI 255 (337)
T ss_dssp --CCTTHHHHCSEEEE-ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHH
T ss_pred --HHHHHhccccEEEE-Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHH
Confidence 00011111222222 122211 013479999999999998887 588887 9999999999999999
Q ss_pred HHHHH
Q 002833 386 KQMVH 390 (875)
Q Consensus 386 ~~l~~ 390 (875)
.++..
T Consensus 256 ~~~~~ 260 (337)
T 2qm8_A 256 EDHRS 260 (337)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88654
No 134
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.16 E-value=3.7e-12 Score=127.42 Aligned_cols=48 Identities=15% Similarity=0.084 Sum_probs=40.6
Q ss_pred hcCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchh
Q 002833 358 VGTANVLYMDEIST-GLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE 406 (875)
Q Consensus 358 v~~p~iLlLDEPTs-GLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~e 406 (875)
+.+|++|++|||++ ++|+.....+.+.+....+ .++++|++.+++..+
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~-~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYN-NLKSTIITTNYSLQR 146 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHH-TTCEEEEECCCCSCC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHH-cCCCEEEEcCCChhH
Confidence 34899999999986 9999999999999988764 478999988887655
No 135
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.13 E-value=9.7e-11 Score=131.22 Aligned_cols=97 Identities=20% Similarity=0.269 Sum_probs=75.0
Q ss_pred HHHHHHHhCCCcc-------ccccccC----ccCCCCCHHHHHHH------HHHHHHhcC-CcEEEEeCCCCCCCHHHHH
Q 002833 318 TDYVLKILGLDIC-------ADTMVGD----EMRRGISGGQKKRV------TTGEMLVGT-ANVLYMDEISTGLDSSTTF 379 (875)
Q Consensus 318 ~~~iL~~lgL~~~-------~dt~vg~----~~~rgLSGGerkRV------sIA~aLv~~-p~iLlLDEPTsGLDs~t~~ 379 (875)
++..++.+++.+. .+..+.+ ..+..+|||||||| ++|++|+.+ |++|+|||||+|||+.++.
T Consensus 245 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~ 324 (371)
T 3auy_A 245 LNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRA 324 (371)
T ss_dssp HHHHHHHTTCSCSCEEECTTCCEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHH
T ss_pred HHHHHHHhcCcceEEEEccceeEEEEcCCCccchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHH
Confidence 3456777777651 1112211 33457999999998 557889999 9999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEe
Q 002833 380 QICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (875)
Q Consensus 380 ~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~ 418 (875)
.+.+.|+++.+ +.+++++.|++ ++..++|++++|+
T Consensus 325 ~l~~~l~~~~~--~~~vi~~th~~--~~~~~~d~~~~l~ 359 (371)
T 3auy_A 325 KLAEIFRKVKS--IPQMIIITHHR--ELEDVADVIINVK 359 (371)
T ss_dssp HHHHHHHHCCS--CSEEEEEESCG--GGGGGCSEEEEEE
T ss_pred HHHHHHHHhcc--CCeEEEEEChH--HHHhhCCEEEEEE
Confidence 99999998743 45788888875 4678999999997
No 136
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.13 E-value=7.9e-12 Score=136.28 Aligned_cols=120 Identities=12% Similarity=0.074 Sum_probs=80.0
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEE---CCEeCCCCcc---CceEEEEecCCCCC-----CCCCHH
Q 002833 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITY---CGHELNEFVP---QRTCAYISQHDLHH-----GEMTVR 263 (875)
Q Consensus 195 ~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~---nG~~~~~~~~---~~~~~yv~Q~d~~~-----~~lTV~ 263 (875)
.+|++++|+||||||||||+|+|+ ..++. +|+|.+ +|++.+.... .+.++|++|++.+. +.+|+
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~~~---~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEELR---TQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCCCC---CSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-HhhCc---ccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 469999999999999999999999 88886 999999 9987754321 12579999998553 78999
Q ss_pred HHH--HHhh----hhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCc-ccccccc
Q 002833 264 ETL--DFSG----RCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI-CADTMVG 336 (875)
Q Consensus 264 EtL--~f~a----~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~~dt~vg 336 (875)
|++ .|+. .|+-. +..+ ..+....++++++.+||.+ .++..+.
T Consensus 238 e~l~~~f~~~~~~~c~~~-----------------~~~~--------------~~e~~~~v~~~l~~~~L~~~~~~~~~~ 286 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYP-----------------DCTH--------------TNEPGCAVKEAVKNGEISCERYKSYLK 286 (302)
T ss_dssp GGGGGGCGGGHHHHHHST-----------------TCCS--------------SSCTTCHHHHHHHTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCC-----------------CCCC--------------CCCCCCHHHHHHHcCCCCHHHHHHHHH
Confidence 888 4431 01100 0000 0011234677899999986 6666655
Q ss_pred CccCCCCCHHHHHHHHHHH
Q 002833 337 DEMRRGISGGQKKRVTTGE 355 (875)
Q Consensus 337 ~~~~rgLSGGerkRVsIA~ 355 (875)
.|||.++|++.||+
T Consensus 287 -----~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 287 -----IIKVYLEEIKELCR 300 (302)
T ss_dssp -----HTTCCCTTHHHHSS
T ss_pred -----HHHHHHHHHHHHhc
Confidence 49999999999986
No 137
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.09 E-value=1.5e-12 Score=147.88 Aligned_cols=139 Identities=17% Similarity=0.146 Sum_probs=91.9
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc-------CceEEEEe----
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYIS---- 251 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~-------~~~~~yv~---- 251 (875)
...+|+++ + .++|++++|+|||||||||||++|+|.+++. +|+|.+.|.++....+ .+.+++.+
T Consensus 155 ~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~---~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~l 229 (418)
T 1p9r_A 155 NHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSS---ERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGL 229 (418)
T ss_dssp HHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT---TSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHH
T ss_pred HHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEEecccchhccCCcceEEEccccCcCHHHHH
Confidence 35588888 4 4899999999999999999999999999886 8999999987642111 12334544
Q ss_pred -----cCCCC--CCC----CCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHH
Q 002833 252 -----QHDLH--HGE----MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDY 320 (875)
Q Consensus 252 -----Q~d~~--~~~----lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (875)
|++.. +++ .|+.+++.++..-+..-.. +... + ....+ .
T Consensus 230 r~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~t---------------lh~~-~--------------~~~~i-~ 278 (418)
T 1p9r_A 230 RAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMST---------------LHTN-T--------------AVGAV-T 278 (418)
T ss_dssp HHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEE---------------ECCS-S--------------SHHHH-H
T ss_pred HHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccc---------------cchh-h--------------HHHHH-H
Confidence 77554 354 5788888765321100000 0000 0 00111 2
Q ss_pred HHHHhCCCccccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEE
Q 002833 321 VLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYM 366 (875)
Q Consensus 321 iL~~lgL~~~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlL 366 (875)
.|..+|+.+.. .. ..|||||+|| ||++|+.+|++..-
T Consensus 279 rL~~lgl~~~~--~~-----~~LSgg~~QR--LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 279 RLRDMGIEPFL--IS-----SSLLGVLAQR--LVRTLCPDCKEPYE 315 (418)
T ss_dssp HHHHHTCCHHH--HH-----HHEEEEEEEE--EEEEECTTTCEEEE
T ss_pred HHHHcCCcHHH--HH-----HHHHHHHHHH--hhhhhcCCCCccCC
Confidence 45667876542 22 3599999999 99999999998763
No 138
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.07 E-value=8.3e-13 Score=153.80 Aligned_cols=85 Identities=15% Similarity=0.164 Sum_probs=66.7
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHH
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (875)
..+++++++.+++|+.++|+|||||||||||++|+|.++|+ +|.|+++|.+--.....+.+.++.|........|..
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~---~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~ 323 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD---AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT---CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC---CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHH
Confidence 45889999999999999999999999999999999999886 899999986522222234567777765534456888
Q ss_pred HHHHHhhh
Q 002833 264 ETLDFSGR 271 (875)
Q Consensus 264 EtL~f~a~ 271 (875)
+.+..+.+
T Consensus 324 ~~l~~~LR 331 (511)
T 2oap_1 324 DLLRAALR 331 (511)
T ss_dssp HHHHTTGG
T ss_pred HHHHHhhc
Confidence 88876655
No 139
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.07 E-value=5.4e-11 Score=134.40 Aligned_cols=63 Identities=10% Similarity=0.099 Sum_probs=47.4
Q ss_pred cCCcEEEEeCCCCCCCHHHH------------HHHHHHHHHHHHhCCcEEEEeecCCc------------------hhHH
Q 002833 359 GTANVLYMDEISTGLDSSTT------------FQICKFLKQMVHILDVTMIVALLQPA------------------PETY 408 (875)
Q Consensus 359 ~~p~iLlLDEPTsGLDs~t~------------~~i~~~L~~l~~~~~~tviisi~q~~------------------~ei~ 408 (875)
.+|+++++|||++.+|+... .++++.|+++++..+.|+|++.|... ..+.
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~ 351 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA 351 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence 47999999999999997543 67889999999888999999877511 2245
Q ss_pred hhcCeEEEEeCCe
Q 002833 409 DLFDDIILLSEGQ 421 (875)
Q Consensus 409 ~lfD~vilL~~G~ 421 (875)
..+|.++.|..|+
T Consensus 352 ~~ad~vl~L~~~~ 364 (400)
T 3lda_A 352 YSSTTRLGFKKGK 364 (400)
T ss_dssp HHCSEEEEEEECS
T ss_pred HhcceEEEEEecC
Confidence 6789999998763
No 140
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.00 E-value=4.4e-12 Score=130.30 Aligned_cols=30 Identities=37% Similarity=0.529 Sum_probs=28.3
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 002833 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (875)
Q Consensus 194 i~pGe~~~llGpnGSGKSTLLk~LaG~l~~ 223 (875)
.++|++++|+||||||||||+++|+|++++
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 479999999999999999999999999875
No 141
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.99 E-value=4.8e-10 Score=109.46 Aligned_cols=47 Identities=9% Similarity=0.132 Sum_probs=34.8
Q ss_pred hcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcE-EEEeecCCchh
Q 002833 358 VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVT-MIVALLQPAPE 406 (875)
Q Consensus 358 v~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~t-viisi~q~~~e 406 (875)
+.+|++|++|||++ +|......+.+.+..+.+. +++ +|++.+.+..+
T Consensus 81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~-g~~~iiits~~~p~~ 128 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNS-GKGFLLLGSEYTPQQ 128 (149)
T ss_dssp GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHH-TCCEEEEEESSCTTT
T ss_pred HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHc-CCcEEEEECCCCHHH
Confidence 45689999999998 6655588888998887764 566 77776655433
No 142
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.99 E-value=3.5e-10 Score=124.80 Aligned_cols=135 Identities=17% Similarity=0.191 Sum_probs=70.6
Q ss_pred EEEEcCCCCCHHHHHHHHhc-CcCCCCCCccEEEECCEeCCCCc-cCceEEEEecCCCCCCCCCHHHHHHHhhhhcCCcc
Q 002833 200 TLLLGPPGAGKTTLMLALAG-KLGKDLRASGKITYCGHELNEFV-PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGT 277 (875)
Q Consensus 200 ~~llGpnGSGKSTLLk~LaG-~l~~~~~~sG~I~~nG~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~ 277 (875)
++|.||||+|||||+++|+| ++.+. .|+|.++|.+..... .+..+++++|.+.+.-..+ + .+..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~---~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------~~~~- 104 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPG---VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D--------MGNN- 104 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTT---CCC------------------CCEECSSEEEECCC--------------C-
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC---CCeEEecceeecccccccceeeeecccceEEecHh--h--------cCCc-
Confidence 89999999999999999999 56665 899999997754321 1355778887653211100 0 0000
Q ss_pred hhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCCCHHHHHHHHHHHHH
Q 002833 278 RYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEML 357 (875)
Q Consensus 278 ~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGerkRVsIA~aL 357 (875)
+ ...+...++.+......+..+ .+|| +
T Consensus 105 -------------------~-----------------~~~~~~~i~~~~~~~~~~~~~------~ls~-----------l 131 (354)
T 1sxj_E 105 -------------------D-----------------RIVIQELLKEVAQMEQVDFQD------SKDG-----------L 131 (354)
T ss_dssp -------------------C-----------------HHHHHHHHHHHTTTTC---------------------------
T ss_pred -------------------c-----------------hHHHHHHHHHHHHhccccccc------cccc-----------c
Confidence 0 000111222221111011111 2566 7
Q ss_pred hcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCc
Q 002833 358 VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPA 404 (875)
Q Consensus 358 v~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~ 404 (875)
..+|+++++|||++ ||..+...+.+.|.+.. .+.++|++.|++.
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~--~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRRTMEKYS--KNIRLIMVCDSMS 175 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHST--TTEEEEEEESCSC
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc--CCCEEEEEeCCHH
Confidence 88999999999999 99999999999998864 3677888877765
No 143
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.99 E-value=2e-12 Score=142.81 Aligned_cols=157 Identities=20% Similarity=0.252 Sum_probs=99.9
Q ss_pred ccccccceeEEEeCC-------eEEEEEcCCCCCHHHHHHHHhcCcCCCC-CCccEEEECCEeCCCC---ccCceEEEEe
Q 002833 183 SVRILKDVSGIVKPS-------RMTLLLGPPGAGKTTLMLALAGKLGKDL-RASGKITYCGHELNEF---VPQRTCAYIS 251 (875)
Q Consensus 183 ~~~IL~~vs~~i~pG-------e~~~llGpnGSGKSTLLk~LaG~l~~~~-~~sG~I~~nG~~~~~~---~~~~~~~yv~ 251 (875)
...++++++..+++| +.++|.||||+|||||+++|+|.+.... ..+|.+..+|.++... ..++.+.|+.
T Consensus 30 ~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iD 109 (334)
T 1in4_A 30 QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFID 109 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEE
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEc
Confidence 345788888888776 8899999999999999999999873211 1367666666544221 1245689999
Q ss_pred cCCCCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccc
Q 002833 252 QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICA 331 (875)
Q Consensus 252 Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~ 331 (875)
|.+.+.+ ++.|+|.......+..- . .... .....++..+..++|.. +
T Consensus 110 E~~~l~~--~~~e~L~~~~~~~~~~i----~--~~~~------------------------~~~~~i~~~l~~~~li~-a 156 (334)
T 1in4_A 110 EIHRLNK--AVEELLYSAIEDFQIDI----M--IGKG------------------------PSAKSIRIDIQPFTLVG-A 156 (334)
T ss_dssp TGGGCCH--HHHHHHHHHHHTSCCCC---------------------------------------------CCCEEEE-E
T ss_pred chhhcCH--HHHHHHHHHHHhcccce----e--eccC------------------------cccccccccCCCeEEEE-e
Confidence 9876665 78888854322111000 0 0000 00011233344556644 5
Q ss_pred cccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCC
Q 002833 332 DTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILD 393 (875)
Q Consensus 332 dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~ 393 (875)
++.++ .||+|+|||+.++ .+||+.+..++.+.|++.++..+
T Consensus 157 t~~~~-----~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~~ 197 (334)
T 1in4_A 157 TTRSG-----LLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASLMD 197 (334)
T ss_dssp ESCGG-----GSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHHTT
T ss_pred cCCcc-----cCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHHcC
Confidence 66665 4999999998654 78899999999999999887544
No 144
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.96 E-value=1e-10 Score=127.44 Aligned_cols=73 Identities=16% Similarity=0.172 Sum_probs=51.3
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEE---CCEeCCCCcc---CceEEEEecCCC-----------
Q 002833 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITY---CGHELNEFVP---QRTCAYISQHDL----------- 255 (875)
Q Consensus 193 ~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~---nG~~~~~~~~---~~~~~yv~Q~d~----------- 255 (875)
.+.+|++++|+||||||||||||+|+|+.+|. +|+|.+ +|+++..... .+.++|++|++.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~---~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~ 241 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEP 241 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccccccc---ccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCH
Confidence 34579999999999999999999999999986 999999 8988754321 135799999874
Q ss_pred -----CCCCCCHHHHHHHh
Q 002833 256 -----HHGEMTVRETLDFS 269 (875)
Q Consensus 256 -----~~~~lTV~EtL~f~ 269 (875)
++|++|| ||+.|.
T Consensus 242 ~~~~~l~~~~~~-~n~~~~ 259 (301)
T 1u0l_A 242 EELKHYFKEFGD-KQCFFS 259 (301)
T ss_dssp HHHGGGSTTSSS-CCCSST
T ss_pred HHHHHHHHhccc-ccCcCC
Confidence 5889999 988875
No 145
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.96 E-value=5.4e-13 Score=150.14 Aligned_cols=168 Identities=14% Similarity=0.136 Sum_probs=113.9
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcC------------cCCCCCCccEEEECCEeCCC----CccCceE---EEEecC
Q 002833 193 IVKPSRMTLLLGPPGAGKTTLMLALAGK------------LGKDLRASGKITYCGHELNE----FVPQRTC---AYISQH 253 (875)
Q Consensus 193 ~i~pGe~~~llGpnGSGKSTLLk~LaG~------------l~~~~~~sG~I~~nG~~~~~----~~~~~~~---~yv~Q~ 253 (875)
.+++|..++|+|+||||||||+|+|+|. ..| .+|.|.++|..+.. +.+++.+ .++.+.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p---~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~ 92 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDP---EEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDI 92 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCT---TEEEEEECCHHHHHHHHHHCCSEEECEEEEEECT
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecc---eeeeeeeCCcchhhhhhhcccccccCcceEEEec
Confidence 4578999999999999999999999993 234 38999998854321 1233333 467777
Q ss_pred CCCCCCCCHHHHH--HHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccc
Q 002833 254 DLHHGEMTVRETL--DFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICA 331 (875)
Q Consensus 254 d~~~~~lTV~EtL--~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~ 331 (875)
+.+...++..|.| .|-..++.. +.++..+....
T Consensus 93 pGl~~~~s~~e~L~~~fl~~ir~~-------------------------------------------d~il~Vvd~~~-- 127 (392)
T 1ni3_A 93 AGLTKGASTGVGLGNAFLSHVRAV-------------------------------------------DAIYQVVRAFD-- 127 (392)
T ss_dssp GGGCCCCCSSSSSCHHHHHHHTTC-------------------------------------------SEEEEEEECCC--
T ss_pred cccccCCcHHHHHHHHHHHHHHHH-------------------------------------------HHHHHHHhccc--
Confidence 7777777766655 332221110 00111111111
Q ss_pred cccccCccCCCCCHHHHHHHHHHHHHhcCC--cEEEEeCCCCCCCHHHHHHHHHHHHHH-HHhCCcEEEEeecCCchhHH
Q 002833 332 DTMVGDEMRRGISGGQKKRVTTGEMLVGTA--NVLYMDEISTGLDSSTTFQICKFLKQM-VHILDVTMIVALLQPAPETY 408 (875)
Q Consensus 332 dt~vg~~~~rgLSGGerkRVsIA~aLv~~p--~iLlLDEPTsGLDs~t~~~i~~~L~~l-~~~~~~tviisi~q~~~ei~ 408 (875)
+..+..+||+. +| +++++|||+.++|........+.++.+ .+ .|.|++ .|-..++.
T Consensus 128 -----d~~i~~v~~~~------------dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~-~g~ti~---sh~~~~~~ 186 (392)
T 1ni3_A 128 -----DAEIIHVEGDV------------DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSR-GANTLE---MKAKKEEQ 186 (392)
T ss_dssp -----TTCSSCCSSSS------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-SSCSSS---HHHHHHHH
T ss_pred -----cceeeeecccc------------CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHh-cCCccc---cccHHHHH
Confidence 22223366653 88 999999999999999999999999887 54 455643 34456788
Q ss_pred hhcCeEE-EEeCC-eEEEecChh
Q 002833 409 DLFDDII-LLSEG-QIVYQGPRD 429 (875)
Q Consensus 409 ~lfD~vi-lL~~G-~iv~~Gp~~ 429 (875)
++||++. +|.+| ++++.|+.+
T Consensus 187 ~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 187 AIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHTTCSCGGGSCCC
T ss_pred HHHHHHHHHhccCCceeecCCCC
Confidence 9999999 99999 988877643
No 146
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.94 E-value=5.8e-13 Score=143.25 Aligned_cols=141 Identities=18% Similarity=0.176 Sum_probs=93.2
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCC-CCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHD-LHHGE 259 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d-~~~~~ 259 (875)
..+++++++.+++| ++|+||||||||||+++|+|.+.+ |.|.++|.++..... .+.+++++|.. ...|.
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 45899999999999 999999999999999999998753 789999977643211 23456666653 34555
Q ss_pred CCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCcc
Q 002833 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (875)
Q Consensus 260 lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (875)
+++.|++++.+..++. .. .+ .+....+..+
T Consensus 106 i~~~Deid~~~~~r~~--------------~~--------------------------~~------~~~~~~~~~l---- 135 (274)
T 2x8a_A 106 VIFFDEVDALCPRRSD--------------RE--------------------------TG------ASVRVVNQLL---- 135 (274)
T ss_dssp EEEEETCTTTCC-------------------------------------------------------CTTHHHHHH----
T ss_pred eEeeehhhhhhcccCC--------------Cc--------------------------ch------HHHHHHHHHH----
Confidence 6666666543211100 00 00 0111112222
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCC------------CCCHHHHHHHHHH
Q 002833 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEIST------------GLDSSTTFQICKF 384 (875)
Q Consensus 340 ~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTs------------GLDs~t~~~i~~~ 384 (875)
..|||||+||+.+++++..+|++| ||+.. -.|...+.+|++.
T Consensus 136 -~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~ 189 (274)
T 2x8a_A 136 -TEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKT 189 (274)
T ss_dssp -HHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHH
T ss_pred -HhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHH
Confidence 249999999999999999999986 98864 2355666665544
No 147
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.91 E-value=2.4e-13 Score=139.02 Aligned_cols=57 Identities=14% Similarity=0.109 Sum_probs=42.9
Q ss_pred HHH-HHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEEeC
Q 002833 353 TGE-MLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (875)
Q Consensus 353 IA~-aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL~~ 419 (875)
.++ +++.+|++++|||+|+++|..+...|.+.|.+..+.. ...| . . ..||.|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~~-----~~a~--~--~-~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDM-----ESSK--E--P-GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHT-----TGGG--S--T-TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-----HHhh--c--c-CCceEEEECCC
Confidence 445 6788888999999999999999999999998876542 1112 1 1 56999988764
No 148
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.81 E-value=6.4e-10 Score=121.24 Aligned_cols=71 Identities=21% Similarity=0.320 Sum_probs=43.6
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEE---CCEeCCCCcc-Cce-EEEEecCCCCCC----CCCHH
Q 002833 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITY---CGHELNEFVP-QRT-CAYISQHDLHHG----EMTVR 263 (875)
Q Consensus 193 ~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~---nG~~~~~~~~-~~~-~~yv~Q~d~~~~----~lTV~ 263 (875)
.+.+|++++|+||||||||||+|+|+|...+. +|+|.+ +|+..+.... .+. .+|+.|.+.+.+ .+|+
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~---~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~- 244 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE- 244 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhccccccc---ccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-
Confidence 34689999999999999999999999999885 899999 8877654221 112 699999987665 7899
Q ss_pred HHHH
Q 002833 264 ETLD 267 (875)
Q Consensus 264 EtL~ 267 (875)
|+|.
T Consensus 245 e~l~ 248 (307)
T 1t9h_A 245 EELG 248 (307)
T ss_dssp HHHG
T ss_pred HHHH
Confidence 8883
No 149
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.81 E-value=1.7e-08 Score=105.04 Aligned_cols=61 Identities=20% Similarity=0.078 Sum_probs=46.9
Q ss_pred cCCcEEEEeCCCCCC--CHHHHHHHHHHHHHHHHhCCcEEEEeecCCch-------hHHhhcCeEEEEeC
Q 002833 359 GTANVLYMDEISTGL--DSSTTFQICKFLKQMVHILDVTMIVALLQPAP-------ETYDLFDDIILLSE 419 (875)
Q Consensus 359 ~~p~iLlLDEPTsGL--Ds~t~~~i~~~L~~l~~~~~~tviisi~q~~~-------ei~~lfD~vilL~~ 419 (875)
.+|+++++|+|++.+ |.....+++..|.++++..+.|++++.|.... .+.+.+|.|+.|..
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 579999999999988 66556777777888877778899887665442 14678899999964
No 150
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.78 E-value=3.5e-10 Score=123.48 Aligned_cols=74 Identities=11% Similarity=0.124 Sum_probs=60.7
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcC--CCCCCccEEEE---CCEeCCCCccCceEEEEecCCCCCCCCCHHHHHHHh
Q 002833 195 KPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITY---CGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFS 269 (875)
Q Consensus 195 ~pGe~~~llGpnGSGKSTLLk~LaG~l~--~~~~~sG~I~~---nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~EtL~f~ 269 (875)
++|++++|+||||||||||+++|+|++. |+ +|+|.+ +|...... ..+.++++ |+..+++.+|+.+++.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~---~G~i~vi~~d~~~~~~~-~~~~~~~v-q~~~~~~~~~~~~~~~~~ 152 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPE---HRRVELITTDGFLHPNQ-VLKERGLM-KKKGFPESYDMHRLVKFV 152 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT---CCCEEEEEGGGGBCCHH-HHHHHTCT-TCTTSGGGBCHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC---CCeEEEEecCCccCcHH-HHHhCCEe-ecCCCCCCccHHHHHHHH
Confidence 8999999999999999999999999987 75 899999 88764321 12446788 877788899999999887
Q ss_pred hhhc
Q 002833 270 GRCL 273 (875)
Q Consensus 270 a~~~ 273 (875)
..+.
T Consensus 153 ~~l~ 156 (308)
T 1sq5_A 153 SDLK 156 (308)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 5543
No 151
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.77 E-value=2.8e-08 Score=114.23 Aligned_cols=184 Identities=15% Similarity=0.150 Sum_probs=111.3
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCH
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 262 (875)
+...|+++.+-+++|++++|.|+||+|||||+..|++...+. .| ..+.|+.-+ ++.
T Consensus 189 G~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~---~g---------------~~Vl~~s~E------~s~ 244 (454)
T 2r6a_A 189 GFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK---TN---------------ENVAIFSLE------MSA 244 (454)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH---SS---------------CCEEEEESS------SCH
T ss_pred CcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh---CC---------------CcEEEEECC------CCH
Confidence 456899999899999999999999999999999999865431 22 134455432 233
Q ss_pred HHHHHHh-hhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCC
Q 002833 263 RETLDFS-GRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (875)
Q Consensus 263 ~EtL~f~-a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (875)
.+...-. +...+... ..+ ....+ .+.+. ..+...++.++..+.. +-+ ..
T Consensus 245 ~~l~~r~~~~~~~~~~-----~~l----~~g~l-~~~~~---------------~~~~~a~~~l~~~~l~---i~d--~~ 294 (454)
T 2r6a_A 245 QQLVMRMLCAEGNINA-----QNL----RTGKL-TPEDW---------------GKLTMAMGSLSNAGIY---IDD--TP 294 (454)
T ss_dssp HHHHHHHHHHHHTCCH-----HHH----HTSCC-CHHHH---------------HHHHHHHHHHHSSCEE---EEC--CT
T ss_pred HHHHHHHHHHHcCCCH-----HHH----hcCCC-CHHHH---------------HHHHHHHHHHhcCCEE---EEC--CC
Confidence 3322110 00011110 000 00000 00011 1122233444332221 111 23
Q ss_pred CCCHHHHHHHHHHHHHh--cCCcEEEEeCCCCCCCH--------HHHHHHHHHHHHHHHhCCcEEEEeec---------C
Q 002833 342 GISGGQKKRVTTGEMLV--GTANVLYMDEISTGLDS--------STTFQICKFLKQMVHILDVTMIVALL---------Q 402 (875)
Q Consensus 342 gLSGGerkRVsIA~aLv--~~p~iLlLDEPTsGLDs--------~t~~~i~~~L~~l~~~~~~tviisi~---------q 402 (875)
++|++|.+ +.++.++ .+|+++++|+++...++ ....++.+.|+.+++..++++|++.| .
T Consensus 295 ~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~ 372 (454)
T 2r6a_A 295 SIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQD 372 (454)
T ss_dssp TCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC--
T ss_pred CCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCC
Confidence 58999987 5666666 68999999999998743 34467888899999888888888765 1
Q ss_pred --Cc-------hhHHhhcCeEEEEeCCeE
Q 002833 403 --PA-------PETYDLFDDIILLSEGQI 422 (875)
Q Consensus 403 --~~-------~ei~~lfD~vilL~~G~i 422 (875)
|. ..+...+|.|++|+.++.
T Consensus 373 ~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 373 KRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp -CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 32 146778999999987654
No 152
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.77 E-value=4.6e-09 Score=114.61 Aligned_cols=114 Identities=18% Similarity=0.232 Sum_probs=80.0
Q ss_pred eeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHHHHHHHh
Q 002833 190 VSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFS 269 (875)
Q Consensus 190 vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~EtL~f~ 269 (875)
+++..++|++++|+|||||||||++..|++.+.+. .|+|.+.+.+.. +. ...|.+
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~~D~~-----r~--------------~a~eqL--- 151 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAAADTF-----RA--------------AAIEQL--- 151 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECTT-----CH--------------HHHHHH---
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEccccc-----cH--------------HHHHHH---
Confidence 34556899999999999999999999999998764 677877665421 10 001111
Q ss_pred hhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCCCHHHHH
Q 002833 270 GRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKK 349 (875)
Q Consensus 270 a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGerk 349 (875)
..+++.+|++. + ...|||+.+
T Consensus 152 -------------------------------------------------~~~~~~~gl~~-----~-----~~~s~~~~~ 172 (306)
T 1vma_A 152 -------------------------------------------------KIWGERVGATV-----I-----SHSEGADPA 172 (306)
T ss_dssp -------------------------------------------------HHHHHHHTCEE-----E-----CCSTTCCHH
T ss_pred -------------------------------------------------HHHHHHcCCcE-----E-----ecCCccCHH
Confidence 11234456542 1 236899999
Q ss_pred HH---HHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 002833 350 RV---TTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVH 390 (875)
Q Consensus 350 RV---sIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~ 390 (875)
++ ++++++..+|+++++|||.. ......+++.|+.+.+
T Consensus 173 ~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l~~ 213 (306)
T 1vma_A 173 AVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKVHR 213 (306)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHHHH
Confidence 99 89999999999999999974 3445566666666544
No 153
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.74 E-value=2.1e-09 Score=123.67 Aligned_cols=53 Identities=21% Similarity=0.097 Sum_probs=49.5
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE 240 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~ 240 (875)
..+|+|+|+.|++ ++++|+|||||||||||++|+|+++|+ +|+|.++|+++..
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~ 69 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD---LTLLNFRNTTEAG 69 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC---TTTCCCCCTTSCS
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEEccc
Confidence 4589999999999 999999999999999999999999997 9999999988754
No 154
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.69 E-value=8.6e-10 Score=131.31 Aligned_cols=160 Identities=20% Similarity=0.243 Sum_probs=100.7
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCC--------
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHD-------- 254 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d-------- 254 (875)
...++++++..+++|+.++|+||||+|||||+++|+|.+++. .-|.+.+++.+.+... ..++|+++..
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~~~~~~~~~~~~~~~~--p~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE--TLEDILVFPNPEDENM--PRIKTVPACQGRRIVEKY 121 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS--SCEEEEEECCTTCTTS--CEEEEEETTHHHHHHHHH
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc--cCCeEEEeCCcccccC--CcEEEEecchHHHHHHHH
Confidence 456889999999999999999999999999999999999874 3489999888776543 4588888752
Q ss_pred --------------CCCCCCCHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHH
Q 002833 255 --------------LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDY 320 (875)
Q Consensus 255 --------------~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (875)
..+..+++.+|+... .|... +.+-+ .... ..
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~-~~~~~--------------------~~~~v-----------~~~~---~~ 166 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVD-NCGRT--------------------KAPFI-----------DATG---AH 166 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEEC-CTTCS--------------------SCCEE-----------ECTT---CC
T ss_pred HHhhccchhhhhhcccccccccccceeec-cccCC--------------------CCCEE-----------EcCC---CC
Confidence 011111111111000 00000 00000 0000 00
Q ss_pred HHHHhCCCccccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 002833 321 VLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQ 387 (875)
Q Consensus 321 iL~~lgL~~~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~ 387 (875)
..+.+|.-..... ...++|+|++|++..+.....++.+||+||+.. |++.....+.+.|.+
T Consensus 167 ~~~L~G~~~~~~~-----~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 167 AGALLGDVRHDPF-----QSGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHHHCEECCCCC---------CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred HHhcCceEEechh-----hcCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 1123332211111 124699999999999999999999999999998 898888777777764
No 155
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.65 E-value=1.6e-09 Score=109.98 Aligned_cols=71 Identities=21% Similarity=0.242 Sum_probs=50.2
Q ss_pred eEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc---cCceEEEEecCCCCCCCCCHHHHHH
Q 002833 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEMTVRETLD 267 (875)
Q Consensus 191 s~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~lTV~EtL~ 267 (875)
|+.+++|++++|+||||||||||+++|+|+++ .+.++|....... ..+.++|++|+...++.+++.+++.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 56778999999999999999999999999863 3666665544322 1345789999877777666666554
Q ss_pred H
Q 002833 268 F 268 (875)
Q Consensus 268 f 268 (875)
+
T Consensus 74 ~ 74 (205)
T 3tr0_A 74 E 74 (205)
T ss_dssp E
T ss_pred e
Confidence 3
No 156
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.65 E-value=3.7e-08 Score=106.93 Aligned_cols=143 Identities=15% Similarity=0.214 Sum_probs=86.2
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHHHHHHHhhhhcC
Q 002833 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLG 274 (875)
Q Consensus 195 ~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~EtL~f~a~~~~ 274 (875)
++|++++|+|||||||||+++.|++.+.+. +| +.+.++.++.. ..++.|.+...++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~---~G---------------~~V~lv~~D~~---r~~a~eqL~~~~~--- 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE---KH---------------KKIAFITTDTY---RIAAVEQLKTYAE--- 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT---TC---------------CCEEEEECCCS---STTHHHHHHHHHT---
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh---cC---------------CEEEEEecCcc---cchHHHHHHHHHH---
Confidence 579999999999999999999999998753 45 24566666532 2345555443211
Q ss_pred CcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCCCHHHHHHHHHH
Q 002833 275 VGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTG 354 (875)
Q Consensus 275 ~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGerkRVsIA 354 (875)
.+|+... + ..+. +.-+.+++
T Consensus 159 -------------------------------------------------~~gl~~~----~------~~~~-~~l~~al~ 178 (296)
T 2px0_A 159 -------------------------------------------------LLQAPLE----V------CYTK-EEFQQAKE 178 (296)
T ss_dssp -------------------------------------------------TTTCCCC----B------CSSH-HHHHHHHH
T ss_pred -------------------------------------------------hcCCCeE----e------cCCH-HHHHHHHH
Confidence 1232211 0 0122 33355555
Q ss_pred HHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH--hCCcEEEEeecCCchhHHhhcCeEEEEeCCeEEEe
Q 002833 355 EMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVH--ILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQ 425 (875)
Q Consensus 355 ~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~--~~~~tviisi~q~~~ei~~lfD~vilL~~G~iv~~ 425 (875)
+ +.+|+++++| |+|+|+.....+.++.+-+.. ..+.++|+...+...++.+.+|++..+..|.++..
T Consensus 179 ~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 179 L--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp H--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred H--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 4 4899999999 999998766544443332221 11334444233444567777777666667777753
No 157
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.61 E-value=9.1e-08 Score=103.80 Aligned_cols=118 Identities=14% Similarity=0.147 Sum_probs=82.8
Q ss_pred cceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHHHHHH
Q 002833 188 KDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLD 267 (875)
Q Consensus 188 ~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~EtL~ 267 (875)
+++++. +|++++|+|+||+||||++..|+|.+.+. .|+|.+.+.+... .. ++ +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~~d~~~-----~~-------------~~-~ql- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADTQR-----PA-------------AR-EQL- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEECCSSC-----HH-------------HH-HHH-
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEecCCccc-----Hh-------------HH-HHH-
Confidence 678887 99999999999999999999999998764 6888887665321 00 00 000
Q ss_pred HhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCCCCHHH
Q 002833 268 FSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQ 347 (875)
Q Consensus 268 f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGe 347 (875)
..+.+..|+..... + .+-...+
T Consensus 146 ---------------------------------------------------~~~~~~~~l~~~~~---~----~~~~p~~ 167 (295)
T 1ls1_A 146 ---------------------------------------------------RLLGEKVGVPVLEV---M----DGESPES 167 (295)
T ss_dssp ---------------------------------------------------HHHHHHHTCCEEEC---C----TTCCHHH
T ss_pred ---------------------------------------------------HHhcccCCeEEEEc---C----CCCCHHH
Confidence 00112344433211 0 0123456
Q ss_pred HHHHHHHHHHhcCCcEEEEeCC-CCCCCHHHHHHHHHHHHHH
Q 002833 348 KKRVTTGEMLVGTANVLYMDEI-STGLDSSTTFQICKFLKQM 388 (875)
Q Consensus 348 rkRVsIA~aLv~~p~iLlLDEP-TsGLDs~t~~~i~~~L~~l 388 (875)
.+|.+++++...+++++++||| +.|+|.....++.+..+.+
T Consensus 168 l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 168 IRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhc
Confidence 6788999988899999999999 9999998888887777665
No 158
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.59 E-value=5.6e-09 Score=120.99 Aligned_cols=166 Identities=11% Similarity=0.091 Sum_probs=96.5
Q ss_pred ceeEEEeCCeEEEEEcCCCCCHHHHHHHHhc--CcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCC--CHHH
Q 002833 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAG--KLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEM--TVRE 264 (875)
Q Consensus 189 ~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG--~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~l--TV~E 264 (875)
.+++.+.++..++|.|++||||||+|++|.. ..... .|+|.+.+.+.+.... +.-..+|++ +|.+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~---p~~v~l~liDpK~~el--------~~~~~lPhl~~~Vvt 227 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQ---PEDVRFIMIDPKMLEL--------SVYEGIPHLLTEVVT 227 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCC---TTTEEEEEECCSSSGG--------GGGTTCTTBSSSCBC
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCC---CceEEEEEECCchhhh--------hhhccCCcccceeec
Confidence 4778888999999999999999999999875 23332 5777777766543211 111112222 2323
Q ss_pred HHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccc--cccCccCCC
Q 002833 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT--MVGDEMRRG 342 (875)
Q Consensus 265 tL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt--~vg~~~~rg 342 (875)
+...+.+... .+..++.+ + ..+++..|+.+..+- .+. ..
T Consensus 228 d~~~a~~~L~-----~~~~Emer-----------------------------R-~~ll~~~Gv~~i~~yn~~~~----~~ 268 (512)
T 2ius_A 228 DMKDAANALR-----WCVNEMER-----------------------------R-YKLMSALGVRNLAGYNEKIA----EA 268 (512)
T ss_dssp SHHHHHHHHH-----HHHHHHHH-----------------------------H-HHHHHHTTCSSHHHHHHHHH----HH
T ss_pred CHHHHHHHHH-----HHHHHHHH-----------------------------H-HHHHHHcCCccHHHHHHHHH----HH
Confidence 3322221100 00111111 1 235666776654321 111 13
Q ss_pred CCHHHHHHH----------HHHHHHhcCCc-EEEEeCCCCCCCHHHHHHHHHHHHHHH---HhCCcEEEEeecCCch
Q 002833 343 ISGGQKKRV----------TTGEMLVGTAN-VLYMDEISTGLDSSTTFQICKFLKQMV---HILDVTMIVALLQPAP 405 (875)
Q Consensus 343 LSGGerkRV----------sIA~aLv~~p~-iLlLDEPTsGLDs~t~~~i~~~L~~l~---~~~~~tviisi~q~~~ 405 (875)
+||||+||. .+++++...|. ++++||++.-+|.. ...+.+.|.+++ +..|.++|++.+.|..
T Consensus 269 ~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~ 344 (512)
T 2ius_A 269 DRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSV 344 (512)
T ss_dssp HHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCT
T ss_pred hhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCcc
Confidence 788887753 34556677887 89999999988843 344555555554 4458899999888873
No 159
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.52 E-value=9e-08 Score=106.31 Aligned_cols=78 Identities=14% Similarity=0.132 Sum_probs=50.6
Q ss_pred HHHHHHHHhcC--CcEEEEeCCCCCC----------CH---HHHHHHHHHHHHH---HHhCCcEEEEeecCCch------
Q 002833 350 RVTTGEMLVGT--ANVLYMDEISTGL----------DS---STTFQICKFLKQM---VHILDVTMIVALLQPAP------ 405 (875)
Q Consensus 350 RVsIA~aLv~~--p~iLlLDEPTsGL----------Ds---~t~~~i~~~L~~l---~~~~~~tviisi~q~~~------ 405 (875)
-+.++++++.. |+++++||+++.+ |+ ..+..+.+.|+++ ++..++|+|++.|-...
T Consensus 127 ~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~ 206 (349)
T 2zr9_A 127 ALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFG 206 (349)
T ss_dssp HHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC--------
T ss_pred HHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccC
Confidence 45677777754 9999999999998 33 2222344444444 46678888887553221
Q ss_pred ---------hHHhhcCeEEEEeCCeEEEecC
Q 002833 406 ---------ETYDLFDDIILLSEGQIVYQGP 427 (875)
Q Consensus 406 ---------ei~~lfD~vilL~~G~iv~~Gp 427 (875)
.+..++|.++.|..++++..|+
T Consensus 207 ~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 207 SPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp ---CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred CCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 1456799999998877665554
No 160
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.49 E-value=1.7e-08 Score=101.62 Aligned_cols=38 Identities=8% Similarity=0.157 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 002833 349 KRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQM 388 (875)
Q Consensus 349 kRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l 388 (875)
+.+.+|++++.+|+++++| ||+||.....++.+.|.+.
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 4477899999999999999 9999999999999888753
No 161
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.46 E-value=2.3e-10 Score=122.66 Aligned_cols=78 Identities=24% Similarity=0.347 Sum_probs=56.9
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCC-CCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDL-HHGE 259 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~-~~~~ 259 (875)
..+++++++.+++| ++|+||||||||||+++|++... .|.|.++|.++..... .+.+++++|... ..|.
T Consensus 62 ~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 134 (278)
T 1iy2_A 62 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 134 (278)
T ss_dssp HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCc
Confidence 45899999999999 99999999999999999999874 6889998876532211 123455666532 4455
Q ss_pred CCHHHHHHH
Q 002833 260 MTVRETLDF 268 (875)
Q Consensus 260 lTV~EtL~f 268 (875)
+++.|++..
T Consensus 135 i~~iDeid~ 143 (278)
T 1iy2_A 135 IVFIDEIDA 143 (278)
T ss_dssp EEEEETHHH
T ss_pred EEehhhhHh
Confidence 666666643
No 162
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.45 E-value=2.3e-10 Score=120.70 Aligned_cols=77 Identities=25% Similarity=0.361 Sum_probs=55.6
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCC-CCCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHD-LHHGE 259 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d-~~~~~ 259 (875)
..+++++++.+++| ++|+||||+|||||+++|+|... .|.|.++|.++..... .+.+++++|.. ...+.
T Consensus 38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 110 (254)
T 1ixz_A 38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 110 (254)
T ss_dssp HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCe
Confidence 45899999999999 99999999999999999999864 6889998866432111 12344555552 24455
Q ss_pred CCHHHHHH
Q 002833 260 MTVRETLD 267 (875)
Q Consensus 260 lTV~EtL~ 267 (875)
+++.|++.
T Consensus 111 i~~~Deid 118 (254)
T 1ixz_A 111 IVFIDEID 118 (254)
T ss_dssp EEEEETHH
T ss_pred EEEehhhh
Confidence 66666664
No 163
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.42 E-value=5.1e-08 Score=101.37 Aligned_cols=40 Identities=23% Similarity=0.219 Sum_probs=23.3
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHh-cCcCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALA-GKLGK 223 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~La-G~l~~ 223 (875)
.+..+++|+.+++|++++|+||||||||||+++|+ |.+++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 45789999999999999999999999999999999 98753
No 164
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.42 E-value=1.1e-07 Score=105.73 Aligned_cols=32 Identities=31% Similarity=0.402 Sum_probs=28.9
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 002833 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (875)
Q Consensus 192 ~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~ 223 (875)
|=+++|+++.|.||||||||||+..+++...+
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~ 87 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQK 87 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45899999999999999999999999987654
No 165
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.34 E-value=1.5e-08 Score=105.84 Aligned_cols=59 Identities=22% Similarity=0.157 Sum_probs=40.3
Q ss_pred eEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc-----------cCceEEEEecC
Q 002833 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-----------PQRTCAYISQH 253 (875)
Q Consensus 191 s~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~-----------~~~~~~yv~Q~ 253 (875)
++.+.+ ++++|+|||||||||||++|+|.+.|+ +|+|.++|.++.... .+..++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPD---LTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCC---TTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccC---CCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 455566 899999999999999999999999986 899999998763211 13457888874
No 166
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.26 E-value=3.5e-08 Score=100.39 Aligned_cols=71 Identities=14% Similarity=0.061 Sum_probs=48.9
Q ss_pred eEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc--cCceEEEEecCCCCCCCCCHHHHHHH
Q 002833 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEMTVRETLDF 268 (875)
Q Consensus 191 s~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~--~~~~~~yv~Q~d~~~~~lTV~EtL~f 268 (875)
.+..++|++++|+||||||||||+++|+|.+ |.+.++|.++.... .+...++++|+....+.+++.+++..
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 95 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMD 95 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHH
Confidence 3556799999999999999999999999975 77889887654211 11235777877555555666666544
No 167
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.18 E-value=2.4e-06 Score=98.51 Aligned_cols=59 Identities=17% Similarity=0.251 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEeCC----------CCCCCHHHHHHHHHHHHHHH---HhCCcEEEEeecCC
Q 002833 345 GGQKKRVTTGEMLVGTANVLYMDEI----------STGLDSSTTFQICKFLKQMV---HILDVTMIVALLQP 403 (875)
Q Consensus 345 GGerkRVsIA~aLv~~p~iLlLDEP----------TsGLDs~t~~~i~~~L~~l~---~~~~~tviisi~q~ 403 (875)
|++++|..++++....|.+||+||+ +.|.|......+.++|..+- ...+..+|.+.+.|
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~ 164 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRP 164 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCCh
Confidence 5778888899999999999999999 34677766666666666653 22355666666655
No 168
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.15 E-value=3.9e-06 Score=92.55 Aligned_cols=131 Identities=16% Similarity=0.177 Sum_probs=86.0
Q ss_pred cccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCC
Q 002833 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261 (875)
Q Consensus 182 ~~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lT 261 (875)
....-|+.+.+-++||+++.|.|+||+|||||+.-++..... . ...+.|+.- +++
T Consensus 31 TG~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~----------~---------g~~Vl~fSl------Ems 85 (338)
T 4a1f_A 31 TGFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN----------D---------DRGVAVFSL------EMS 85 (338)
T ss_dssp CSCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH----------T---------TCEEEEEES------SSC
T ss_pred CCChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----------c---------CCeEEEEeC------CCC
Confidence 345678888888999999999999999999999988865321 1 123555543 244
Q ss_pred HHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCC
Q 002833 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (875)
Q Consensus 262 V~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (875)
..+... |+ .. ....+.+.+..+ |
T Consensus 86 ~~ql~~---Rl---------ls-------------------------------------~~~~v~~~~l~~---g----- 108 (338)
T 4a1f_A 86 AEQLAL---RA---------LS-------------------------------------DLTSINMHDLES---G----- 108 (338)
T ss_dssp HHHHHH---HH---------HH-------------------------------------HHHCCCHHHHHH---T-----
T ss_pred HHHHHH---HH---------HH-------------------------------------HhhCCCHHHHhc---C-----
Confidence 443221 00 00 000001111111 2
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhC-CcEEEEe
Q 002833 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHIL-DVTMIVA 399 (875)
Q Consensus 342 gLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~-~~tviis 399 (875)
.||++|.+|++.|...+.++++++.|+|+.. ..+|...++++.+.. +..+|+.
T Consensus 109 ~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~~~ir~l~~~~gg~~lIVI 162 (338)
T 4a1f_A 109 RLDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIRLQLRKLKSQHKELGIAFI 162 (338)
T ss_dssp CCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHHHHHHHHHHHCTTEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHHHHHHHHHHhcCCCCEEEE
Confidence 3999999999999999999999999998643 346777778777666 6666664
No 169
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.13 E-value=1.1e-06 Score=88.47 Aligned_cols=37 Identities=14% Similarity=0.267 Sum_probs=32.3
Q ss_pred HHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 002833 351 VTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMV 389 (875)
Q Consensus 351 VsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~ 389 (875)
...|++++.+|+++++| ||++|.....++.+.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45688999999999999 99999999999998887654
No 170
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.13 E-value=1.3e-06 Score=86.89 Aligned_cols=38 Identities=26% Similarity=0.248 Sum_probs=34.3
Q ss_pred cc--cceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC
Q 002833 186 IL--KDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD 224 (875)
Q Consensus 186 IL--~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~ 224 (875)
.+ +++++.+.+| +++|+||||||||||+++|++.+.+.
T Consensus 14 ~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~ 53 (182)
T 3kta_A 14 SYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGL 53 (182)
T ss_dssp GGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred eecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 55 7899999999 99999999999999999999987653
No 171
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.12 E-value=1.2e-06 Score=97.72 Aligned_cols=158 Identities=16% Similarity=0.060 Sum_probs=86.8
Q ss_pred CCeE-EEEEcCCCCCHHHHHHHHhcCcCCC-------C-CCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCHH---
Q 002833 196 PSRM-TLLLGPPGAGKTTLMLALAGKLGKD-------L-RASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR--- 263 (875)
Q Consensus 196 pGe~-~~llGpnGSGKSTLLk~LaG~l~~~-------~-~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV~--- 263 (875)
+|-. ++|+|+||||||||++.|+|..... . ..+|.|.++|.++.- -.+.|++.+.+ ...|.
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l---~DT~G~i~~lp----~~lve~f~ 249 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIML---VDTVGFIRGIP----PQIVDAFF 249 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEE---EECCCBCSSCC----GGGHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEE---EeCCCchhcCC----HHHHHHHH
Confidence 3444 9999999999999999999986420 0 247899999865421 12345544322 11221
Q ss_pred HHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChh--HHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCC
Q 002833 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE--IDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (875)
Q Consensus 264 EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (875)
.++.........-.-.+ . .++. .+. ....+..+|+.+++.+..--.|+|. ..
T Consensus 250 ~tl~~~~~aD~il~VvD-------------~-s~~~~~~~~-----------~~~~~~~~L~~l~~~~~p~ilV~NK-~D 303 (364)
T 2qtf_A 250 VTLSEAKYSDALILVID-------------S-TFSENLLIE-----------TLQSSFEILREIGVSGKPILVTLNK-ID 303 (364)
T ss_dssp HHHHGGGGSSEEEEEEE-------------T-TSCHHHHHH-----------HHHHHHHHHHHHTCCSCCEEEEEEC-GG
T ss_pred HHHHHHHhCCEEEEEEE-------------C-CCCcchHHH-----------HHHHHHHHHHHhCcCCCCEEEEEEC-CC
Confidence 12221110000000000 0 0000 010 0112455777888765543334442 33
Q ss_pred CCCHHHHHHHHHH----HHH-hcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 002833 342 GISGGQKKRVTTG----EML-VGTANVLYMDEISTGLDSSTTFQICKFLKQMVH 390 (875)
Q Consensus 342 gLSGGerkRVsIA----~aL-v~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~ 390 (875)
-+|+|+++|+.++ +.+ ..+|++ +|+|++|.....++.+.|.++..
T Consensus 304 l~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 304 KINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp GCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHhc
Confidence 4788888988887 444 333344 89999999999999999988754
No 172
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.06 E-value=1.2e-06 Score=88.63 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=28.0
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCC
Q 002833 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD 224 (875)
Q Consensus 193 ~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~ 224 (875)
.+++|++++|+||||||||||+++|++.+.|+
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~ 33 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTS 33 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTCC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 57899999999999999999999999998553
No 173
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.02 E-value=8e-07 Score=97.49 Aligned_cols=81 Identities=12% Similarity=0.064 Sum_probs=61.7
Q ss_pred cccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCc---------c---CceEEEE-ec
Q 002833 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---------P---QRTCAYI-SQ 252 (875)
Q Consensus 186 IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~---------~---~~~~~yv-~Q 252 (875)
+++++++.+++|++++|+|+||+||||++..|++.+.+. .|+|.+.+.+..... . +..+.++ +|
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~---g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~ 170 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL---GYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKAN 170 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCS
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCC
Confidence 457899999999999999999999999999999998764 789999887653211 1 3457888 77
Q ss_pred CCCCCCCCCHHHHHHHh
Q 002833 253 HDLHHGEMTVRETLDFS 269 (875)
Q Consensus 253 ~d~~~~~lTV~EtL~f~ 269 (875)
.....|..++.+++..+
T Consensus 171 ~~~~~p~~~~~~~l~~~ 187 (320)
T 1zu4_A 171 KLNADPASVVFDAIKKA 187 (320)
T ss_dssp STTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 65555555677776554
No 174
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.98 E-value=5e-07 Score=95.70 Aligned_cols=52 Identities=37% Similarity=0.406 Sum_probs=36.8
Q ss_pred hhhccc-cCCcccccccccceeEEEeC---CeEEEEEcCCCCCHHHHHHHHhcCcC
Q 002833 171 LGLLHL-VPSKKRSVRILKDVSGIVKP---SRMTLLLGPPGAGKTTLMLALAGKLG 222 (875)
Q Consensus 171 l~~~~~-~~~~~~~~~IL~~vs~~i~p---Ge~~~llGpnGSGKSTLLk~LaG~l~ 222 (875)
+...++ .+.+....++|+|+|+.|++ |+.++|+|+|||||||+.++|++.+.
T Consensus 18 l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 18 LETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp --------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred eEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 344444 44443456799999999999 99999999999999999999998764
No 175
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.97 E-value=1.5e-06 Score=87.23 Aligned_cols=27 Identities=37% Similarity=0.600 Sum_probs=25.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 002833 197 SRMTLLLGPPGAGKTTLMLALAGKLGK 223 (875)
Q Consensus 197 Ge~~~llGpnGSGKSTLLk~LaG~l~~ 223 (875)
|++++|+||||||||||+++|+|++++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 678999999999999999999999864
No 176
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.94 E-value=7.5e-07 Score=94.15 Aligned_cols=63 Identities=24% Similarity=0.121 Sum_probs=46.9
Q ss_pred cccceeEEEeCCeEEEEEcCCCCCHHHHHHHHh---cCcCCCCCCccEEE--------ECCEeCCCCc----cCceEEEE
Q 002833 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALA---GKLGKDLRASGKIT--------YCGHELNEFV----PQRTCAYI 250 (875)
Q Consensus 186 IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~La---G~l~~~~~~sG~I~--------~nG~~~~~~~----~~~~~~yv 250 (875)
++++.+ ++|++++|+|||||||||++++|+ |...++ +|.|. .+|.++.... ..+.++++
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d---~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 92 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLD---SGAIYRVLALAALHHQVDISTEEALVPLAAHLDVR 92 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE---HHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC---CCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEE
Confidence 444443 789999999999999999999999 888776 89998 8998774321 12457788
Q ss_pred ecCC
Q 002833 251 SQHD 254 (875)
Q Consensus 251 ~Q~d 254 (875)
+|.+
T Consensus 93 ~~~~ 96 (252)
T 4e22_A 93 FVSQ 96 (252)
T ss_dssp EEEE
T ss_pred EecC
Confidence 8753
No 177
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.93 E-value=3e-06 Score=85.90 Aligned_cols=39 Identities=33% Similarity=0.170 Sum_probs=25.1
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l 221 (875)
...+++|||+.+++|++++|+|||||||||+.+.|++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 356899999999999999999999999999999999876
No 178
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.89 E-value=8.5e-07 Score=90.01 Aligned_cols=53 Identities=26% Similarity=0.323 Sum_probs=43.5
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEE--EECCEeCC
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKI--TYCGHELN 239 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I--~~nG~~~~ 239 (875)
..+..+.++...++|++++|+||||||||||+++|++.+. . .|.+ .++|.++.
T Consensus 11 ~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~---~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 11 SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-Q---KGKLCYILDGDNVR 65 (200)
T ss_dssp CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-H---TTCCEEEEEHHHHT
T ss_pred ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-h---cCceEEEecCchhh
Confidence 3446667777778999999999999999999999999986 3 6777 88876654
No 179
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.84 E-value=1.4e-05 Score=97.74 Aligned_cols=79 Identities=16% Similarity=0.145 Sum_probs=60.0
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEEE-eC
Q 002833 342 GISGGQKKRVTTGEMLVGTANVLYMDEIST-GLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL-SE 419 (875)
Q Consensus 342 gLSGGerkRVsIA~aLv~~p~iLlLDEPTs-GLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vilL-~~ 419 (875)
-+|+|+.+|..++..++.+++++++|||.. +||......+++.+..... ...+++++..++...+.+++++..++ ..
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~-~~~iIl~SAT~~~~~l~~~~~~~~vi~v~ 268 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRP-DLKIIIMSATLDAEKFQRYFNDAPLLAVP 268 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCT-TCEEEEEESCSCCHHHHHHTTSCCEEECC
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCC-CceEEEEeccccHHHHHHHhcCCCccccc
Confidence 479999999999999999999999999995 9998887777777665543 35677776555666777788754333 34
Q ss_pred Ce
Q 002833 420 GQ 421 (875)
Q Consensus 420 G~ 421 (875)
|+
T Consensus 269 gr 270 (773)
T 2xau_A 269 GR 270 (773)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 180
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.83 E-value=4.7e-06 Score=83.17 Aligned_cols=38 Identities=21% Similarity=0.234 Sum_probs=30.7
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEEC
Q 002833 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYC 234 (875)
Q Consensus 195 ~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~n 234 (875)
.+|++++|+||||||||||+++|++.+++. ..|.|.+.
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~--~~~~i~~t 40 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDR--FAYPIPHT 40 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTT--EECCCCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCcc--EEEeeecc
Confidence 378999999999999999999999987642 35666543
No 181
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.81 E-value=1.9e-07 Score=108.28 Aligned_cols=77 Identities=25% Similarity=0.362 Sum_probs=53.8
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCcc---CceEEEEecCCC-CCCC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDL-HHGE 259 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~~~yv~Q~d~-~~~~ 259 (875)
..+++++++.+++| ++|.||||+|||||+++|+|... .|.|.++|.++.+... .+.+.+++|.-. ..|.
T Consensus 53 ~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~ 125 (499)
T 2dhr_A 53 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 125 (499)
T ss_dssp GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSC
T ss_pred hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCC
Confidence 35789999999999 99999999999999999999864 6789999877643211 122344555432 3344
Q ss_pred CCHHHHHH
Q 002833 260 MTVRETLD 267 (875)
Q Consensus 260 lTV~EtL~ 267 (875)
+.+.|+++
T Consensus 126 il~IDEId 133 (499)
T 2dhr_A 126 IVFIDEID 133 (499)
T ss_dssp EEEEECGG
T ss_pred EEEEehHH
Confidence 45555553
No 182
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.73 E-value=6.4e-05 Score=82.01 Aligned_cols=130 Identities=13% Similarity=0.104 Sum_probs=83.8
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCH
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 262 (875)
...-|+++.+-+++|+++.|.|+||+|||||+.-++...-. .| ..+.|+.-+ ++.
T Consensus 54 G~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~----~g---------------~~vl~~slE------~s~ 108 (315)
T 3bh0_A 54 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD----ND---------------DVVNLHSLE------MGK 108 (315)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT----TT---------------CEEEEEESS------SCH
T ss_pred ChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----cC---------------CeEEEEECC------CCH
Confidence 45678888888999999999999999999999888753311 11 245666533 344
Q ss_pred HHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCC--ccccccccCccC
Q 002833 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD--ICADTMVGDEMR 340 (875)
Q Consensus 263 ~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~--~~~dt~vg~~~~ 340 (875)
.+...=... ...|++ +..+ |.
T Consensus 109 ~~l~~R~~~---------------------------------------------------~~~~i~~~~l~~---~~--- 131 (315)
T 3bh0_A 109 KENIKRLIV---------------------------------------------------TAGSINAQKIKA---AR--- 131 (315)
T ss_dssp HHHHHHHHH---------------------------------------------------HHTTCCHHHHHS---CH---
T ss_pred HHHHHHHHH---------------------------------------------------HHcCCCHHHHhc---CC---
Confidence 443211000 000111 0000 00
Q ss_pred CCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcE--EEEe
Q 002833 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVT--MIVA 399 (875)
Q Consensus 341 rgLSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~t--viis 399 (875)
..||++|++|+..|...+.++++++.|+|... ..++...++++.+..+.. +|+.
T Consensus 132 ~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-----~~~i~~~i~~l~~~~~~~~~lVVI 187 (315)
T 3bh0_A 132 RDFASEDWGKLSMAIGEISNSNINIFDKAGQS-----VNYIWSKTRQTKRKNPGKRVIVMI 187 (315)
T ss_dssp HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----HHHHHHHHHHHHHTSSSCCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----HHHHHHHHHHHHHhcCCCCeEEEE
Confidence 12899999999999888888999999998643 455677777776655655 6654
No 183
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.73 E-value=9.4e-06 Score=84.32 Aligned_cols=39 Identities=21% Similarity=0.186 Sum_probs=34.3
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeC
Q 002833 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL 238 (875)
Q Consensus 193 ~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~ 238 (875)
..++|++++|.|+||||||||+++|+|. .|+|.+.|.+.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~-------~g~v~~~~~~~ 54 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY-------KNDICLLTEPV 54 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG-------TTTEEEECCTH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc-------cCCeEEEecCH
Confidence 4479999999999999999999999987 57888888764
No 184
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.67 E-value=7.1e-06 Score=91.86 Aligned_cols=44 Identities=34% Similarity=0.316 Sum_probs=39.3
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEE
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITY 233 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~ 233 (875)
..+|+++++.+++|++++|+||||||||||+++|+|.+ +|++..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~------~g~~~~ 199 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------GGKALN 199 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH------CCEEEC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc------CCcEEE
Confidence 46899999999999999999999999999999999864 566654
No 185
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.65 E-value=3.2e-05 Score=88.35 Aligned_cols=96 Identities=13% Similarity=0.235 Sum_probs=61.7
Q ss_pred cCCcEEEEeCCCCCCCH-HHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCeEEE-EeCCeEEEecChh--hHH--
Q 002833 359 GTANVLYMDEISTGLDS-STTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL-LSEGQIVYQGPRD--NVL-- 432 (875)
Q Consensus 359 ~~p~iLlLDEPTsGLDs-~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~vil-L~~G~iv~~Gp~~--~~~-- 432 (875)
.+|++||+||+..-.+. .+...+.+.+..+.. .+..+|++.+.|..++..+.+++.- +..|.++..++++ +..
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~-~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~i 271 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHD-SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSI 271 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT-TTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHH
Confidence 37899999999887764 677778888888764 4778888877765543333333332 4567777766653 222
Q ss_pred --HHHHHcCCCCCCCCCHHHHHHHhcc
Q 002833 433 --EFFEHMGFKCPERKGVADFLQEVTS 457 (875)
Q Consensus 433 --~~F~~~Gf~~p~~~~~adfl~~v~s 457 (875)
...+..|...|+ +..+++...+.
T Consensus 272 L~~~~~~~~~~i~~--e~l~~la~~~~ 296 (440)
T 2z4s_A 272 ARKMLEIEHGELPE--EVLNFVAENVD 296 (440)
T ss_dssp HHHHHHHHTCCCCT--THHHHHHHHCC
T ss_pred HHHHHHHcCCCCCH--HHHHHHHHhcC
Confidence 333445665554 56777766554
No 186
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.63 E-value=8.9e-05 Score=82.21 Aligned_cols=56 Identities=11% Similarity=0.188 Sum_probs=43.3
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEe-CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEee
Q 002833 342 GISGGQKKRVTTGEMLVGTANVLYMD-EISTGLDSSTTFQICKFLKQMVHILDVTMIVAL 400 (875)
Q Consensus 342 gLSGGerkRVsIA~aLv~~p~iLlLD-EPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi 400 (875)
.+|+||+|++. +.+...++-++++| ++..|+|......+++.++.... +..++++.
T Consensus 231 ~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~ 287 (357)
T 2e87_A 231 ERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVI 287 (357)
T ss_dssp TSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEE
T ss_pred hhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEE
Confidence 48999998876 55556777889999 99999999988888887777543 55565554
No 187
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.62 E-value=0.00024 Score=76.02 Aligned_cols=27 Identities=48% Similarity=0.760 Sum_probs=24.1
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 195 ~pGe~~~llGpnGSGKSTLLk~LaG~l 221 (875)
.++..++|.||||+|||||+++|++..
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 467789999999999999999999854
No 188
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.62 E-value=2.6e-05 Score=79.62 Aligned_cols=29 Identities=28% Similarity=0.375 Sum_probs=27.3
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 002833 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (875)
Q Consensus 195 ~pGe~~~llGpnGSGKSTLLk~LaG~l~~ 223 (875)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999875
No 189
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.61 E-value=1.8e-05 Score=78.04 Aligned_cols=37 Identities=24% Similarity=0.368 Sum_probs=30.8
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeC
Q 002833 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL 238 (875)
Q Consensus 195 ~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~ 238 (875)
.+|++++|+||||||||||+++|++.+ |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-------g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-------HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-------TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-------CcEEEeCccc
Confidence 468999999999999999999999864 5667766443
No 190
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.61 E-value=1.3e-05 Score=81.53 Aligned_cols=41 Identities=20% Similarity=0.132 Sum_probs=34.7
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEe
Q 002833 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237 (875)
Q Consensus 194 i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~ 237 (875)
.++|++++|+|+||||||||++.|++.+++. .|+|.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~---~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ---GISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc---CCeEEEeccC
Confidence 4689999999999999999999999998764 6777776544
No 191
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.54 E-value=4.4e-05 Score=77.44 Aligned_cols=29 Identities=28% Similarity=0.228 Sum_probs=26.5
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 193 ~i~pGe~~~llGpnGSGKSTLLk~LaG~l 221 (875)
.+++|++++|+|+||||||||++.|++.+
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999999999875
No 192
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.50 E-value=0.00044 Score=75.61 Aligned_cols=55 Identities=15% Similarity=0.237 Sum_probs=39.0
Q ss_pred HHHHHHHHHHh---cCCcEEEEeCCCCCCCH--------H----HHHHHHHHHHHHHHhCCcEEEEeecCC
Q 002833 348 KKRVTTGEMLV---GTANVLYMDEISTGLDS--------S----TTFQICKFLKQMVHILDVTMIVALLQP 403 (875)
Q Consensus 348 rkRVsIA~aLv---~~p~iLlLDEPTsGLDs--------~----t~~~i~~~L~~l~~~~~~tviisi~q~ 403 (875)
.+.+..++.++ .+++++++|+.++-.+. . ...+++..|+.+++..+.++|++ .|.
T Consensus 188 ~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~-nq~ 257 (324)
T 2z43_A 188 IAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIIT-NQV 257 (324)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEE-EEC
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEE-cce
Confidence 35666777777 67999999999976532 1 23566777788888778888886 443
No 193
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.50 E-value=0.00025 Score=78.54 Aligned_cols=44 Identities=23% Similarity=0.387 Sum_probs=32.1
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcC--cCCCCCCccEEEE
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK--LGKDLRASGKITY 233 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~--l~~~~~~sG~I~~ 233 (875)
..+|+++++.++ .++|+|++||||||||++|+|. ++.+ +|.++-
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~---~~~vT~ 69 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRG---SGIVTR 69 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCC---SSSCCC
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCC---CCcccC
Confidence 458999999998 8999999999999999999994 4443 555443
No 194
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.47 E-value=3.7e-05 Score=78.33 Aligned_cols=28 Identities=21% Similarity=0.412 Sum_probs=26.0
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 002833 195 KPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (875)
Q Consensus 195 ~pGe~~~llGpnGSGKSTLLk~LaG~l~ 222 (875)
.+|++++|+||||||||||++.|++.++
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4899999999999999999999999865
No 195
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.46 E-value=0.00057 Score=75.39 Aligned_cols=35 Identities=23% Similarity=0.236 Sum_probs=29.2
Q ss_pred ccccee-EEEeCCeEEEEEcCCCCCHHHHHHHHhcC
Q 002833 186 ILKDVS-GIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (875)
Q Consensus 186 IL~~vs-~~i~pGe~~~llGpnGSGKSTLLk~LaG~ 220 (875)
-|+.+- |-+++|+++.|.||||||||||+..|+..
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344433 57899999999999999999999998874
No 196
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.44 E-value=1.2e-05 Score=87.98 Aligned_cols=58 Identities=14% Similarity=0.094 Sum_probs=40.7
Q ss_pred cccccceeEEEeCCe------EEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCC
Q 002833 184 VRILKDVSGIVKPSR------MTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHH 257 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe------~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~ 257 (875)
.+.|++++..+..++ +++|+||||||||||+++|++++... .....++++.+++.+.
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~-----------------~~~~~v~~i~~D~f~~ 135 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRW-----------------PDHPNVEVITTDGFLY 135 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTS-----------------TTCCCEEEEEGGGGBC
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhccc-----------------CCCCeEEEEeeccccc
Confidence 345555555555554 99999999999999999999998631 0013466777776655
Q ss_pred C
Q 002833 258 G 258 (875)
Q Consensus 258 ~ 258 (875)
+
T Consensus 136 ~ 136 (321)
T 3tqc_A 136 S 136 (321)
T ss_dssp C
T ss_pred c
Confidence 4
No 197
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.40 E-value=3.1e-05 Score=90.82 Aligned_cols=43 Identities=33% Similarity=0.385 Sum_probs=36.7
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCcc-EEE-ECCEeC
Q 002833 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASG-KIT-YCGHEL 238 (875)
Q Consensus 193 ~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG-~I~-~nG~~~ 238 (875)
.+++|++++|+|+||||||||+++|+|++.+. +| +|. ++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~---~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEM---GGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT---CSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhccc---CCceEEEECCcHH
Confidence 47899999999999999999999999999875 54 675 777543
No 198
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.39 E-value=1.8e-05 Score=95.09 Aligned_cols=48 Identities=31% Similarity=0.331 Sum_probs=35.1
Q ss_pred eEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCC
Q 002833 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE 240 (875)
Q Consensus 191 s~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~ 240 (875)
|+.+++|+.++|+|++|+|||||++.|++...+ ....|+| .+|..+..
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~-~~~~G~V-~~g~~~~d 50 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGA-KERRGRV-EEGTTTTD 50 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTS-SSSCCCG-GGTCCSSC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCC-CCcccee-cCCccccc
Confidence 345688999999999999999999999976543 1236777 56655443
No 199
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.39 E-value=0.001 Score=73.44 Aligned_cols=44 Identities=5% Similarity=0.058 Sum_probs=31.5
Q ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh--CCcEEEEeecCC
Q 002833 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHI--LDVTMIVALLQP 403 (875)
Q Consensus 359 ~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~--~~~tviisi~q~ 403 (875)
..|.++++||+... |......+.+.+.+.... .+.++|++.+.+
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 45889999999876 888777777777665431 356677666655
No 200
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.38 E-value=5.7e-05 Score=73.98 Aligned_cols=27 Identities=44% Similarity=0.643 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 002833 196 PSRMTLLLGPPGAGKTTLMLALAGKLG 222 (875)
Q Consensus 196 pGe~~~llGpnGSGKSTLLk~LaG~l~ 222 (875)
.|++++|+||||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999764
No 201
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.31 E-value=0.00069 Score=70.96 Aligned_cols=35 Identities=37% Similarity=0.700 Sum_probs=25.2
Q ss_pred cccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 002833 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (875)
Q Consensus 186 IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~ 222 (875)
.++++++.+++| ++|.||||+|||||+++|++.+.
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 455555555555 89999999999999999999764
No 202
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.29 E-value=0.00019 Score=77.72 Aligned_cols=45 Identities=9% Similarity=0.112 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHHHh--cCCcEEEEeCCCCCCCHHH-HHHHHHHHHHHHHhCCc
Q 002833 343 ISGGQKKRVTTGEMLV--GTANVLYMDEISTGLDSST-TFQICKFLKQMVHILDV 394 (875)
Q Consensus 343 LSGGerkRVsIA~aLv--~~p~iLlLDEPTsGLDs~t-~~~i~~~L~~l~~~~~~ 394 (875)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.+.++++..+.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~ 148 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNF 148 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCC
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCc
Confidence 888886 5667776 78999999 7888876 66777888888764443
No 203
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.26 E-value=3.4e-05 Score=85.15 Aligned_cols=51 Identities=22% Similarity=0.286 Sum_probs=42.7
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEe
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~ 237 (875)
..+++++++.+++|.+++|+|+||+|||||++.|+|.+.+. .|+|.+-+.+
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~---~~~v~v~~~d 93 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE---GLKVAVIAVD 93 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEEEC
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEEeec
Confidence 45788888889999999999999999999999999988653 5666665544
No 204
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.21 E-value=0.00017 Score=69.87 Aligned_cols=31 Identities=29% Similarity=0.452 Sum_probs=25.1
Q ss_pred ceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcC
Q 002833 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (875)
Q Consensus 189 ~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~ 220 (875)
+.++.+.+| +++|+|||||||||+|++|.-.
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 444555555 9999999999999999999743
No 205
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.19 E-value=0.00067 Score=73.23 Aligned_cols=29 Identities=45% Similarity=0.701 Sum_probs=26.1
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 193 ~i~pGe~~~llGpnGSGKSTLLk~LaG~l 221 (875)
.++++..++|.||||+|||||+++|++.+
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 35788899999999999999999999865
No 206
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.15 E-value=0.00028 Score=86.59 Aligned_cols=32 Identities=50% Similarity=0.700 Sum_probs=28.7
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 002833 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (875)
Q Consensus 192 ~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~ 223 (875)
+.+++|+.++|.||||+|||||+++|+|.+..
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 35789999999999999999999999998743
No 207
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.12 E-value=0.00013 Score=72.15 Aligned_cols=40 Identities=35% Similarity=0.362 Sum_probs=31.3
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCcc--EEEECCEeC
Q 002833 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASG--KITYCGHEL 238 (875)
Q Consensus 195 ~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG--~I~~nG~~~ 238 (875)
++|++++|+|++||||||+++.|++.+.+ .| .|.++|..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~----~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC----HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH----TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh----CCCcEEEECChHH
Confidence 57999999999999999999999998754 34 555555443
No 208
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.12 E-value=0.00012 Score=81.09 Aligned_cols=41 Identities=27% Similarity=0.339 Sum_probs=34.5
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeC
Q 002833 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL 238 (875)
Q Consensus 195 ~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~ 238 (875)
+++..++|+|+||||||||++.|+|.+.+. .|+|.+.+.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~---~~~v~V~~~dp 112 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTER---GHKLSVLAVDP 112 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEECCC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhc---CCeEEEEeecC
Confidence 467899999999999999999999988764 67777766554
No 209
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.11 E-value=0.00098 Score=75.78 Aligned_cols=37 Identities=30% Similarity=0.260 Sum_probs=30.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECC
Q 002833 196 PSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCG 235 (875)
Q Consensus 196 pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG 235 (875)
++.+++++|||||||||++..|++.+.+. .++|.+-+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~---G~kVllv~ 132 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR---GYKVGLVA 132 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEe
Confidence 68999999999999999999999988653 45555533
No 210
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.03 E-value=5.8e-05 Score=77.39 Aligned_cols=37 Identities=41% Similarity=0.460 Sum_probs=28.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEE
Q 002833 197 SRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITY 233 (875)
Q Consensus 197 Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~ 233 (875)
+.+++|+|||||||||++++|++.+.-....+|+|..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999999876321112677776
No 211
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.03 E-value=0.00023 Score=74.01 Aligned_cols=38 Identities=29% Similarity=0.308 Sum_probs=27.7
Q ss_pred cccceeEEEe---CCeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 002833 186 ILKDVSGIVK---PSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (875)
Q Consensus 186 IL~~vs~~i~---pGe~~~llGpnGSGKSTLLk~LaG~l~~ 223 (875)
=|.++|+.+. +|.+++|.|+|||||||+++.|+..+..
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3667777776 9999999999999999999999998753
No 212
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.02 E-value=0.0093 Score=66.08 Aligned_cols=30 Identities=33% Similarity=0.507 Sum_probs=26.2
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 192 ~~i~pGe~~~llGpnGSGKSTLLk~LaG~l 221 (875)
+-+++|+++.|.|+||+|||||...++...
T Consensus 58 GGl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 58 GGLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999998887643
No 213
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.99 E-value=0.00062 Score=66.76 Aligned_cols=27 Identities=37% Similarity=0.589 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 195 ~pGe~~~llGpnGSGKSTLLk~LaG~l 221 (875)
++|..++|+|+||+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 478899999999999999999999864
No 214
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.99 E-value=0.00012 Score=85.79 Aligned_cols=48 Identities=29% Similarity=0.499 Sum_probs=39.4
Q ss_pred ccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCE
Q 002833 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGH 236 (875)
Q Consensus 185 ~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~ 236 (875)
.+++++++.+ +|+.++|+||||+|||||+++|++.+.+. .|+|.++|.
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~---~~~i~~~~~ 144 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRK---FVRISLGGV 144 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCE---EEEECCCC-
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCC---eEEEEeccc
Confidence 3566777776 89999999999999999999999998764 677776653
No 215
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.94 E-value=0.00071 Score=77.11 Aligned_cols=71 Identities=15% Similarity=0.141 Sum_probs=40.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcCC------C---CCCccEEEECCEeCCCCc---cCceEEEEecCCCCCCCCCHHHH
Q 002833 198 RMTLLLGPPGAGKTTLMLALAGKLGK------D---LRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEMTVRET 265 (875)
Q Consensus 198 e~~~llGpnGSGKSTLLk~LaG~l~~------~---~~~sG~I~~nG~~~~~~~---~~~~~~yv~Q~d~~~~~lTV~Et 265 (875)
-.++|+|+||+|||||++.|+|.... . ....|.+.++|+++.-.. .++...+.+|....+..+++.++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 46999999999999999999998531 0 024799999998653111 12223333344334444445555
Q ss_pred HHH
Q 002833 266 LDF 268 (875)
Q Consensus 266 L~f 268 (875)
+..
T Consensus 261 i~~ 263 (439)
T 1mky_A 261 IEK 263 (439)
T ss_dssp HHH
T ss_pred Hhh
Confidence 543
No 216
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.91 E-value=0.00018 Score=78.97 Aligned_cols=29 Identities=28% Similarity=0.424 Sum_probs=25.6
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 002833 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (875)
Q Consensus 195 ~pGe~~~llGpnGSGKSTLLk~LaG~l~~ 223 (875)
.+++.++|.||+|+|||||++.+++.+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999987653
No 217
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.90 E-value=0.00024 Score=71.43 Aligned_cols=36 Identities=31% Similarity=0.379 Sum_probs=31.3
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~ 220 (875)
..+++++|+..++++ ++|+|++|+|||||++.+.+.
T Consensus 13 ~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 13 SSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 458888888888875 689999999999999999874
No 218
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.87 E-value=0.0034 Score=68.24 Aligned_cols=28 Identities=29% Similarity=0.343 Sum_probs=25.8
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhc
Q 002833 192 GIVKPSRMTLLLGPPGAGKTTLMLALAG 219 (875)
Q Consensus 192 ~~i~pGe~~~llGpnGSGKSTLLk~LaG 219 (875)
+-+++|+++.|.||||+|||||...++.
T Consensus 93 GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 93 GGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999999988875
No 219
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.86 E-value=0.00069 Score=67.49 Aligned_cols=35 Identities=34% Similarity=0.386 Sum_probs=21.0
Q ss_pred ccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcC
Q 002833 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (875)
Q Consensus 185 ~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~ 220 (875)
.+|+++++..++. .++|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999998887 5689999999999999999974
No 220
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.86 E-value=0.00025 Score=72.28 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=33.9
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCcc--EEEECCEe
Q 002833 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASG--KITYCGHE 237 (875)
Q Consensus 194 i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG--~I~~nG~~ 237 (875)
+++|.+++|.|++||||||+.+.|++.+.+. .| .+.++|..
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~---~g~~~~~~~~d~ 64 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRD---RRVHAYRLDGDN 64 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHH---HCCCEEEECHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccc---cCCcEEEECChH
Confidence 4689999999999999999999999988643 56 67776543
No 221
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.83 E-value=0.00026 Score=73.43 Aligned_cols=67 Identities=12% Similarity=0.073 Sum_probs=41.3
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchhHHhhcCe
Q 002833 344 SGGQKKRVTTGEMLVGTANVLYMDEIST-GLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (875)
Q Consensus 344 SGGerkRVsIA~aLv~~p~iLlLDEPTs-GLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ei~~lfD~ 413 (875)
+.|.-.+.. ...+.+-+++++||.-. ++|.......++.+..... .-.++++|-.-+.+...++|++
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~-~~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYP-EVRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCCHHHHHHTTS
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCC-CCeEEEEecCCCHHHHHHHcCC
Confidence 345554442 33578889999999966 7887776555555554432 2346666666565555555554
No 222
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.76 E-value=0.0034 Score=71.60 Aligned_cols=131 Identities=17% Similarity=0.250 Sum_probs=80.6
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeCCCCccCceEEEEecCCCCCCCCCH
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~~~yv~Q~d~~~~~lTV 262 (875)
+..-|+.+.+-+++|+++.|.|+||+|||||+.-++...... .| ..+.|+.-+ ++.
T Consensus 186 G~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~---~g---------------~~vl~~slE------~~~ 241 (444)
T 2q6t_A 186 GFKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALK---EG---------------VGVGIYSLE------MPA 241 (444)
T ss_dssp SCHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT---TC---------------CCEEEEESS------SCH
T ss_pred CCHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh---CC---------------CeEEEEECC------CCH
Confidence 345677777779999999999999999999999888654211 11 235555432 333
Q ss_pred HHHHHHhhhhcCCcchhHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcchhhhHHHHHHHHhCCCccccccccCccCCC
Q 002833 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (875)
Q Consensus 263 ~EtL~f~a~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (875)
.+-.. ++ +....|++... -.-| .
T Consensus 242 ~~l~~---R~------------------------------------------------~~~~~~i~~~~-l~~g-----~ 264 (444)
T 2q6t_A 242 AQLTL---RM------------------------------------------------MCSEARIDMNR-VRLG-----Q 264 (444)
T ss_dssp HHHHH---HH------------------------------------------------HHHHTTCCTTT-CCGG-----G
T ss_pred HHHHH---HH------------------------------------------------HHHHcCCCHHH-HhCC-----C
Confidence 32110 00 00112222100 0012 3
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEe
Q 002833 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVA 399 (875)
Q Consensus 343 LSGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviis 399 (875)
|+..+.+|+.-|...+...++.+.|+|. ++ ..++...++++.+..+..+|+.
T Consensus 265 l~~~~~~~~~~a~~~l~~~~l~i~d~~~--~s---~~~l~~~~~~l~~~~~~~lIvI 316 (444)
T 2q6t_A 265 LTDRDFSRLVDVASRLSEAPIYIDDTPD--LT---LMEVRARARRLVSQNQVGLIII 316 (444)
T ss_dssp CCHHHHHHHHHHHHHHHTSCEEEECCTT--CB---HHHHHHHHHHHHHHSCCCEEEE
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEECCCC--CC---HHHHHHHHHHHHHHcCCCEEEE
Confidence 9999999999887777777888888763 33 3455666777765556666664
No 223
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.75 E-value=0.0022 Score=67.92 Aligned_cols=28 Identities=46% Similarity=0.780 Sum_probs=24.4
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 194 VKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 194 i~pGe~~~llGpnGSGKSTLLk~LaG~l 221 (875)
+.++.-++|.||||+|||||+++|++.+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3566779999999999999999999865
No 224
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.74 E-value=0.0018 Score=70.25 Aligned_cols=46 Identities=13% Similarity=0.228 Sum_probs=32.0
Q ss_pred cCCcEEEEeCCCCC-CCHHHHHHHHHHHHHHHHhCCcEEEEeecCCch
Q 002833 359 GTANVLYMDEISTG-LDSSTTFQICKFLKQMVHILDVTMIVALLQPAP 405 (875)
Q Consensus 359 ~~p~iLlLDEPTsG-LDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~ 405 (875)
.++.+||+||+-.- .+..+...+...+..+.. .+..+|++...+..
T Consensus 97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~-~~~~iii~~~~~~~ 143 (324)
T 1l8q_A 97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL-LEKQIILASDRHPQ 143 (324)
T ss_dssp HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHH-TTCEEEEEESSCGG
T ss_pred cCCCEEEEcCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEecCChH
Confidence 46899999998662 344677788888887765 35666666665543
No 225
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.69 E-value=0.00057 Score=69.21 Aligned_cols=29 Identities=24% Similarity=0.405 Sum_probs=26.1
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 002833 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (875)
Q Consensus 194 i~pGe~~~llGpnGSGKSTLLk~LaG~l~ 222 (875)
..+|.+++|+||||||||||.+.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46899999999999999999999998763
No 226
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.69 E-value=0.00065 Score=67.67 Aligned_cols=32 Identities=28% Similarity=0.322 Sum_probs=26.3
Q ss_pred ceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcC
Q 002833 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (875)
Q Consensus 189 ~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~ 220 (875)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 56777888999999999999999999999975
No 227
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.69 E-value=0.00088 Score=68.20 Aligned_cols=32 Identities=31% Similarity=0.479 Sum_probs=25.1
Q ss_pred ceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 189 ~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l 221 (875)
+.++.+.+| +++|+|||||||||+|.+|.-.+
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHHHHh
Confidence 344555554 99999999999999999986443
No 228
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.68 E-value=0.00051 Score=76.54 Aligned_cols=50 Identities=26% Similarity=0.405 Sum_probs=42.2
Q ss_pred hhccccCCccccccccc--------------ceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 172 GLLHLVPSKKRSVRILK--------------DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 172 ~~~~~~~~~~~~~~IL~--------------~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l 221 (875)
...++.+.+...+..|+ |+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 135 ~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 135 LFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 33445555666677888 899999999999999999999999999999865
No 229
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.67 E-value=0.00058 Score=67.86 Aligned_cols=29 Identities=41% Similarity=0.546 Sum_probs=26.5
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 002833 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (875)
Q Consensus 195 ~pGe~~~llGpnGSGKSTLLk~LaG~l~~ 223 (875)
++|.+++|.|+|||||||+.+.|++.+..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999999998764
No 230
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.65 E-value=0.0033 Score=65.13 Aligned_cols=53 Identities=23% Similarity=0.437 Sum_probs=42.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeec---------CCchhHHhhcCeEEEEe
Q 002833 360 TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL---------QPAPETYDLFDDIILLS 418 (875)
Q Consensus 360 ~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~---------q~~~ei~~lfD~vilL~ 418 (875)
+++++++||.-. |+. ++++.++.+++ .+.++|++=+ .+++++..++|.|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~-~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAE-NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHh-CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 654 35566777776 4889999877 67788999999999875
No 231
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.62 E-value=0.00024 Score=78.95 Aligned_cols=35 Identities=23% Similarity=0.212 Sum_probs=29.1
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~ 223 (875)
.+.+++++++.| +|+|++|+|||||++.|.|....
T Consensus 29 ~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~ 63 (361)
T 2qag_A 29 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY 63 (361)
T ss_dssp THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-
T ss_pred CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCC
Confidence 345788888877 99999999999999999886443
No 232
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.56 E-value=0.0072 Score=62.15 Aligned_cols=61 Identities=20% Similarity=0.226 Sum_probs=42.4
Q ss_pred hcCCcEEEEeCCCC----CCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchh---------HHhhcCeEEEEe
Q 002833 358 VGTANVLYMDEIST----GLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE---------TYDLFDDIILLS 418 (875)
Q Consensus 358 v~~p~iLlLDEPTs----GLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~e---------i~~lfD~vilL~ 418 (875)
-.+++++++|-.+. .-|.....+++..|+.++++.+.+++++.+...+. ...++|-|+.|.
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 35788999996542 12555667888899999998899998886543222 234689888885
No 233
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.56 E-value=0.00092 Score=66.63 Aligned_cols=40 Identities=28% Similarity=0.261 Sum_probs=30.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEe
Q 002833 198 RMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237 (875)
Q Consensus 198 e~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~ 237 (875)
.+++|+|++|||||||++.|.+.+.+....-|.|..++++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 5789999999999999999999865422234777776654
No 234
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.53 E-value=0.0011 Score=66.87 Aligned_cols=69 Identities=13% Similarity=0.077 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecCCchh--HHhhcCeEEEEe
Q 002833 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE--TYDLFDDIILLS 418 (875)
Q Consensus 344 SGGerkRVsIA~aLv~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q~~~e--i~~lfD~vilL~ 418 (875)
+.|+.+|..+++.+..+|..+.++ ++.+++.....+.+.++.. .+.++|+..+- ..+ ....||.+++|+
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~---~~~~vv~~~~~-l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ---TAPYTLFVVPL-LIENKLTALCDRILVVD 131 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC---CSSEEEEECTT-TTTTTCGGGCSEEEEEE
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc---CCCEEEEEech-hhhcCcHhhCCEEEEEE
Confidence 678889999998888887654433 2344555555444444322 24566665432 222 356789888774
No 235
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.47 E-value=0.00083 Score=76.19 Aligned_cols=46 Identities=20% Similarity=0.121 Sum_probs=39.1
Q ss_pred cceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEeC
Q 002833 188 KDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL 238 (875)
Q Consensus 188 ~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~~ 238 (875)
+++++. +|++++++|++||||||++..|++.+.+. .|+|.+.+.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd~D~ 136 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADT 136 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEECCS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEeeccc
Confidence 567777 89999999999999999999999999764 67888766543
No 236
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.47 E-value=0.0003 Score=77.74 Aligned_cols=38 Identities=24% Similarity=0.476 Sum_probs=33.0
Q ss_pred ccccceeEEEeCCeE--EEEEcCCCCCHHHHHHHHhcCcC
Q 002833 185 RILKDVSGIVKPSRM--TLLLGPPGAGKTTLMLALAGKLG 222 (875)
Q Consensus 185 ~IL~~vs~~i~pGe~--~~llGpnGSGKSTLLk~LaG~l~ 222 (875)
.+|+.++..+++|+. ++|+|+|||||||+.++|++.+.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 367777777888888 99999999999999999999764
No 237
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.41 E-value=0.00082 Score=70.64 Aligned_cols=40 Identities=28% Similarity=0.276 Sum_probs=31.7
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEe
Q 002833 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237 (875)
Q Consensus 193 ~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~ 237 (875)
..+++.++.|+|+|||||||+.+.|+..+. .|.+.++|..
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~-----~~~~~~~~D~ 67 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ-----GNIVIIDGDS 67 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT-----TCCEEECGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC-----CCcEEEecHH
Confidence 456788999999999999999999998764 2446666644
No 238
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.40 E-value=0.0029 Score=61.23 Aligned_cols=23 Identities=39% Similarity=0.635 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
.++|+|+||+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 239
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.39 E-value=0.033 Score=64.31 Aligned_cols=37 Identities=11% Similarity=0.041 Sum_probs=30.8
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~ 220 (875)
..-|+.+-+-+.+|+++.|.|+||+|||||+.-++-.
T Consensus 229 ~~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~ 265 (503)
T 1q57_A 229 CTGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQ 265 (503)
T ss_dssp CTTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHH
T ss_pred hhhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHH
Confidence 4456666666999999999999999999998877644
No 240
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.37 E-value=0.0015 Score=65.79 Aligned_cols=21 Identities=29% Similarity=0.309 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 002833 199 MTLLLGPPGAGKTTLMLALAG 219 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG 219 (875)
.++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
No 241
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.33 E-value=0.012 Score=60.71 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=22.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCC
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKLGK 223 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l~~ 223 (875)
.++|+|++|+|||||++.|+|....
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~ 55 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVF 55 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcC
Confidence 4799999999999999999997653
No 242
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.29 E-value=0.0014 Score=73.48 Aligned_cols=43 Identities=19% Similarity=0.304 Sum_probs=32.6
Q ss_pred eEEEeCCeEEEEEcCCCCCHHHHHHHHhcC-----------cCCCCCCccEEEECCE
Q 002833 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGK-----------LGKDLRASGKITYCGH 236 (875)
Q Consensus 191 s~~i~pGe~~~llGpnGSGKSTLLk~LaG~-----------l~~~~~~sG~I~~nG~ 236 (875)
-+.++.|..++|+|+||+|||||+++|+|. ..|. .|.|.+.|.
T Consensus 16 ~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~---~g~v~v~~~ 69 (396)
T 2ohf_A 16 IGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPN---ESRVPVPDE 69 (396)
T ss_dssp CCCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCS---EEEEECCCH
T ss_pred HhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCce---eEEEEECCc
Confidence 345577888999999999999999999997 2332 577776654
No 243
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.28 E-value=0.002 Score=63.67 Aligned_cols=27 Identities=44% Similarity=0.695 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 195 ~pGe~~~llGpnGSGKSTLLk~LaG~l 221 (875)
.+|..++|+|+|||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998654
No 244
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.27 E-value=0.00054 Score=75.04 Aligned_cols=41 Identities=32% Similarity=0.602 Sum_probs=35.9
Q ss_pred ccccccceeEEEeCCeE--EEEEcCCCCCHHHHHHHHhcCcCC
Q 002833 183 SVRILKDVSGIVKPSRM--TLLLGPPGAGKTTLMLALAGKLGK 223 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~--~~llGpnGSGKSTLLk~LaG~l~~ 223 (875)
...+++.++..++.|++ +++.||||+||||+++++++.+.+
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 34578888888889998 999999999999999999998754
No 245
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.26 E-value=0.00059 Score=73.84 Aligned_cols=46 Identities=28% Similarity=0.230 Sum_probs=37.2
Q ss_pred cc-eeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECCEe
Q 002833 188 KD-VSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237 (875)
Q Consensus 188 ~~-vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG~~ 237 (875)
++ +++..+ |++++++|+||+||||++..|++.+.+. .|+|.+.+.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~---g~~v~l~~~D 135 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKK---GFKVGLVGAD 135 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHT---TCCEEEEECC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEecC
Confidence 45 677766 9999999999999999999999998753 5677765544
No 246
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.25 E-value=0.04 Score=59.89 Aligned_cols=28 Identities=46% Similarity=0.692 Sum_probs=24.7
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 194 VKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 194 i~pGe~~~llGpnGSGKSTLLk~LaG~l 221 (875)
.+|..-++|.||||+|||||.++++...
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 3567789999999999999999999865
No 247
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.25 E-value=0.0022 Score=62.96 Aligned_cols=22 Identities=41% Similarity=0.709 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 002833 199 MTLLLGPPGAGKTTLMLALAGK 220 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~ 220 (875)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 248
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.23 E-value=0.012 Score=61.12 Aligned_cols=27 Identities=52% Similarity=0.743 Sum_probs=23.4
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 195 ~pGe~~~llGpnGSGKSTLLk~LaG~l 221 (875)
++..-++|.||||+|||||.++|+..+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 455668999999999999999999865
No 249
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.23 E-value=0.0014 Score=65.99 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 197 SRMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 197 Ge~~~llGpnGSGKSTLLk~LaG~l 221 (875)
..+++|+|+||||||||.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999875
No 250
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.21 E-value=0.018 Score=63.61 Aligned_cols=27 Identities=41% Similarity=0.719 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 195 ~pGe~~~llGpnGSGKSTLLk~LaG~l 221 (875)
++..-++|.||+|+|||||.++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456679999999999999999999764
No 251
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.21 E-value=0.045 Score=60.82 Aligned_cols=29 Identities=41% Similarity=0.665 Sum_probs=25.3
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhcC
Q 002833 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (875)
Q Consensus 192 ~~i~pGe~~~llGpnGSGKSTLLk~LaG~ 220 (875)
+-+++|+++.|.||||+|||||...++-.
T Consensus 69 GGl~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 69 GGIPRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 35799999999999999999999877643
No 252
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.18 E-value=0.0018 Score=62.71 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcC
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKLG 222 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l~ 222 (875)
+++|.|++||||||+.+.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999997753
No 253
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.14 E-value=0.0091 Score=77.83 Aligned_cols=30 Identities=30% Similarity=0.423 Sum_probs=27.2
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 002833 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (875)
Q Consensus 193 ~i~pGe~~~llGpnGSGKSTLLk~LaG~l~ 222 (875)
=+++|+++.|.||||+|||||+..++....
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa 757 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 757 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHH
Confidence 599999999999999999999999987643
No 254
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.12 E-value=0.0024 Score=62.59 Aligned_cols=26 Identities=35% Similarity=0.510 Sum_probs=23.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCcC
Q 002833 197 SRMTLLLGPPGAGKTTLMLALAGKLG 222 (875)
Q Consensus 197 Ge~~~llGpnGSGKSTLLk~LaG~l~ 222 (875)
|.++.|.|+|||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998764
No 255
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.91 E-value=0.03 Score=60.92 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=21.4
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHh
Q 002833 192 GIVKPSRMTLLLGPPGAGKTTLMLALA 218 (875)
Q Consensus 192 ~~i~pGe~~~llGpnGSGKSTLLk~La 218 (875)
|=+.+| ++.|-||||+|||||+.-++
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~ 49 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMV 49 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHH
Confidence 457889 89999999999999954443
No 256
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.91 E-value=0.0034 Score=62.09 Aligned_cols=27 Identities=41% Similarity=0.587 Sum_probs=23.9
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 195 ~pGe~~~llGpnGSGKSTLLk~LaG~l 221 (875)
+++.++.|.|+|||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998654
No 257
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.90 E-value=0.0029 Score=65.51 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=24.9
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 194 VKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 194 i~pGe~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-.+|.+++|+|++||||||+.+.|++.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4678899999999999999999999865
No 258
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.89 E-value=0.004 Score=61.39 Aligned_cols=27 Identities=26% Similarity=0.414 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 002833 196 PSRMTLLLGPPGAGKTTLMLALAGKLG 222 (875)
Q Consensus 196 pGe~~~llGpnGSGKSTLLk~LaG~l~ 222 (875)
+|.+++|.|++||||||+.+.|+-.+.
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999997653
No 259
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=95.86 E-value=0.0038 Score=69.43 Aligned_cols=31 Identities=16% Similarity=0.303 Sum_probs=26.6
Q ss_pred ccceeEEEeCCeEEEEEcCCCCCHHHHHHHHh
Q 002833 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALA 218 (875)
Q Consensus 187 L~~vs~~i~pGe~~~llGpnGSGKSTLLk~La 218 (875)
+++..+.+.|| +++|.|||||||||+|.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 35667777775 99999999999999999987
No 260
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.85 E-value=0.038 Score=62.04 Aligned_cols=28 Identities=39% Similarity=0.614 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 002833 195 KPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (875)
Q Consensus 195 ~pGe~~~llGpnGSGKSTLLk~LaG~l~ 222 (875)
+|-.=++|-||||+|||+|.++||+...
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e~~ 207 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHHTD 207 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHHHT
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHhhC
Confidence 3444588999999999999999998764
No 261
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.82 E-value=0.023 Score=64.82 Aligned_cols=38 Identities=24% Similarity=0.266 Sum_probs=32.2
Q ss_pred ccccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcC
Q 002833 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (875)
Q Consensus 183 ~~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~ 220 (875)
+..-|+.+.+-+++|+++.|.|+||+|||||+.-++..
T Consensus 183 G~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 183 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp SCHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHH
T ss_pred CcHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Confidence 44567777777999999999999999999998887754
No 262
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.81 E-value=0.0033 Score=65.56 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 198 e~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-+++|.|||||||||+.+.|+..+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999765
No 263
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.74 E-value=0.0051 Score=61.49 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 196 pGe~~~llGpnGSGKSTLLk~LaG~l 221 (875)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999876
No 264
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.70 E-value=0.0046 Score=60.94 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
.++|+|+||+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999864
No 265
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.69 E-value=0.0041 Score=65.37 Aligned_cols=25 Identities=32% Similarity=0.643 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcC
Q 002833 198 RMTLLLGPPGAGKTTLMLALAGKLG 222 (875)
Q Consensus 198 e~~~llGpnGSGKSTLLk~LaG~l~ 222 (875)
.+++|+||||||||||.+.|++.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 3689999999999999999998753
No 266
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.67 E-value=0.0059 Score=61.22 Aligned_cols=28 Identities=18% Similarity=0.206 Sum_probs=25.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 002833 196 PSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (875)
Q Consensus 196 pGe~~~llGpnGSGKSTLLk~LaG~l~~ 223 (875)
+|.+++|.|++||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 5778999999999999999999987753
No 267
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.67 E-value=0.0053 Score=59.13 Aligned_cols=19 Identities=37% Similarity=0.688 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 002833 199 MTLLLGPPGAGKTTLMLAL 217 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~L 217 (875)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 268
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.67 E-value=0.0043 Score=61.83 Aligned_cols=24 Identities=38% Similarity=0.641 Sum_probs=21.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcC
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKLG 222 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l~ 222 (875)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998763
No 269
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.65 E-value=0.0055 Score=60.40 Aligned_cols=26 Identities=35% Similarity=0.301 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 196 pGe~~~llGpnGSGKSTLLk~LaG~l 221 (875)
++..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999765
No 270
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.63 E-value=0.0058 Score=65.56 Aligned_cols=36 Identities=31% Similarity=0.361 Sum_probs=28.1
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcCCCCCCccEEEECC
Q 002833 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCG 235 (875)
Q Consensus 195 ~pGe~~~llGpnGSGKSTLLk~LaG~l~~~~~~sG~I~~nG 235 (875)
..|.++.|.|||||||||+.+.|+..++ .|-+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~-----~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ-----GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT-----TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEec
Confidence 4578999999999999999999987553 24455554
No 271
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.59 E-value=0.1 Score=68.08 Aligned_cols=36 Identities=31% Similarity=0.385 Sum_probs=29.6
Q ss_pred cccccee--EEEeCCeEEEEEcCCCCCHHHHHHHHhcC
Q 002833 185 RILKDVS--GIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (875)
Q Consensus 185 ~IL~~vs--~~i~pGe~~~llGpnGSGKSTLLk~LaG~ 220 (875)
.-|+.+- |=+++|+++.|.||||+|||||...++..
T Consensus 369 ~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~ 406 (1706)
T 3cmw_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 406 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 3466654 36999999999999999999998877654
No 272
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.58 E-value=0.0063 Score=59.30 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 002833 198 RMTLLLGPPGAGKTTLMLALAG 219 (875)
Q Consensus 198 e~~~llGpnGSGKSTLLk~LaG 219 (875)
.++.|.|+|||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 273
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.55 E-value=0.0055 Score=60.29 Aligned_cols=26 Identities=50% Similarity=0.523 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 196 pGe~~~llGpnGSGKSTLLk~LaG~l 221 (875)
.+..++|.|+|||||||+.+.|+-.+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999998554
No 274
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.52 E-value=0.0049 Score=60.44 Aligned_cols=23 Identities=43% Similarity=0.566 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
.++|+|+|||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48899999999999999999765
No 275
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.50 E-value=0.0068 Score=60.95 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=24.3
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 195 ~pGe~~~llGpnGSGKSTLLk~LaG~l 221 (875)
++|.+++|.|++||||||+.+.|+-.+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999765
No 276
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.50 E-value=0.031 Score=63.66 Aligned_cols=29 Identities=41% Similarity=0.716 Sum_probs=24.7
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 002833 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (875)
Q Consensus 194 i~pGe~~~llGpnGSGKSTLLk~LaG~l~ 222 (875)
++|-+=++|-||||+|||+|.++||+...
T Consensus 240 i~pprGILLyGPPGTGKTlLAkAiA~e~~ 268 (467)
T 4b4t_H 240 IDPPKGILLYGPPGTGKTLCARAVANRTD 268 (467)
T ss_dssp CCCCSEEEECSCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhccC
Confidence 35566688999999999999999998764
No 277
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.49 E-value=0.0064 Score=60.26 Aligned_cols=27 Identities=30% Similarity=0.529 Sum_probs=23.8
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 195 ~pGe~~~llGpnGSGKSTLLk~LaG~l 221 (875)
+++.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998654
No 278
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.49 E-value=0.022 Score=57.49 Aligned_cols=53 Identities=21% Similarity=0.353 Sum_probs=41.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeec---------CCchhHHhhcCeEEEEe
Q 002833 360 TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL---------QPAPETYDLFDDIILLS 418 (875)
Q Consensus 360 ~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~---------q~~~ei~~lfD~vilL~ 418 (875)
+.+++++||.-- +|+. +++.++.++.. +..+|++-+ .+++++.+++|.|.-|.
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~-~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAES-GRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHT-TCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhC-CCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 468999999654 6543 36677777764 889999876 77889999999998775
No 279
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.44 E-value=0.0076 Score=61.24 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhc
Q 002833 196 PSRMTLLLGPPGAGKTTLMLALAG 219 (875)
Q Consensus 196 pGe~~~llGpnGSGKSTLLk~LaG 219 (875)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 280
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.37 E-value=0.0085 Score=59.09 Aligned_cols=26 Identities=35% Similarity=0.524 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 196 pGe~~~llGpnGSGKSTLLk~LaG~l 221 (875)
++.+++|.|++||||||+.+.|+-.+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998654
No 281
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.37 E-value=0.0077 Score=60.62 Aligned_cols=28 Identities=29% Similarity=0.304 Sum_probs=24.9
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 002833 195 KPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (875)
Q Consensus 195 ~pGe~~~llGpnGSGKSTLLk~LaG~l~ 222 (875)
++|.+++|.|++||||||+.+.|+-.+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5688999999999999999999997653
No 282
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.32 E-value=0.019 Score=66.37 Aligned_cols=28 Identities=54% Similarity=0.833 Sum_probs=23.8
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 194 VKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 194 i~pGe~~~llGpnGSGKSTLLk~LaG~l 221 (875)
+++..-++|.||||+|||+|.++|+...
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 3455679999999999999999998754
No 283
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.32 E-value=0.0086 Score=61.02 Aligned_cols=27 Identities=41% Similarity=0.624 Sum_probs=23.4
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 195 ~pGe~~~llGpnGSGKSTLLk~LaG~l 221 (875)
++|..++|+|++||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 467789999999999999999998754
No 284
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.31 E-value=0.003 Score=62.91 Aligned_cols=27 Identities=30% Similarity=0.577 Sum_probs=23.7
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 195 ~pGe~~~llGpnGSGKSTLLk~LaG~l 221 (875)
+++.+++|.|++||||||+.+.|+..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998754
No 285
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.30 E-value=0.044 Score=56.19 Aligned_cols=53 Identities=21% Similarity=0.368 Sum_probs=42.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeec---------CCchhHHhhcCeEEEEe
Q 002833 360 TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL---------QPAPETYDLFDDIILLS 418 (875)
Q Consensus 360 ~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~---------q~~~ei~~lfD~vilL~ 418 (875)
+.+++++||.-- +|.. +++.|+.++. .++.+|++=+ .+++++..++|.|.-|.
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~-~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLAN-RGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHH-TTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhh-CCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 578999999976 6543 3467777776 4889999988 88999999999999875
No 286
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.25 E-value=0.0087 Score=58.89 Aligned_cols=24 Identities=29% Similarity=0.589 Sum_probs=21.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcC
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKLG 222 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l~ 222 (875)
+++|.|++||||||+.+.|+-.+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999997664
No 287
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.14 E-value=0.011 Score=58.86 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 002833 198 RMTLLLGPPGAGKTTLMLALAGK 220 (875)
Q Consensus 198 e~~~llGpnGSGKSTLLk~LaG~ 220 (875)
.+++|.|++||||||+.+.|+..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 57999999999999999999975
No 288
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.13 E-value=0.0078 Score=59.63 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcCC
Q 002833 198 RMTLLLGPPGAGKTTLMLALAGKLGK 223 (875)
Q Consensus 198 e~~~llGpnGSGKSTLLk~LaG~l~~ 223 (875)
.+++|.|++|||||||++.|++.+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 37899999999999999999987653
No 289
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.13 E-value=0.0035 Score=63.17 Aligned_cols=25 Identities=36% Similarity=0.541 Sum_probs=22.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCC
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKLGK 223 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l~~ 223 (875)
+++|.|++||||||+++.|+..+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999988753
No 290
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.13 E-value=0.0085 Score=60.25 Aligned_cols=25 Identities=36% Similarity=0.612 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcC
Q 002833 198 RMTLLLGPPGAGKTTLMLALAGKLG 222 (875)
Q Consensus 198 e~~~llGpnGSGKSTLLk~LaG~l~ 222 (875)
+.+.|+||||||||||++.|....+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 3478999999999999999976543
No 291
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.06 E-value=0.21 Score=66.24 Aligned_cols=37 Identities=30% Similarity=0.364 Sum_probs=30.0
Q ss_pred cccccee--EEEeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 185 RILKDVS--GIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 185 ~IL~~vs--~~i~pGe~~~llGpnGSGKSTLLk~LaG~l 221 (875)
.-|+.+- +=+++|+++.|.||||+|||||...++...
T Consensus 369 ~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~ 407 (2050)
T 3cmu_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 407 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3455554 369999999999999999999988887544
No 292
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.04 E-value=0.0098 Score=62.88 Aligned_cols=23 Identities=43% Similarity=0.628 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
.++|+|+||||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999974
No 293
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.00 E-value=0.02 Score=56.42 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 002833 199 MTLLLGPPGAGKTTLMLALAGK 220 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~ 220 (875)
-++|+|++|+|||||++.+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999876654
No 294
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=94.98 E-value=0.016 Score=64.25 Aligned_cols=38 Identities=24% Similarity=0.197 Sum_probs=27.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcC-----C--C-CCCccEEEECC
Q 002833 198 RMTLLLGPPGAGKTTLMLALAGKLG-----K--D-LRASGKITYCG 235 (875)
Q Consensus 198 e~~~llGpnGSGKSTLLk~LaG~l~-----~--~-~~~sG~I~~nG 235 (875)
-.++|+|.||+|||||+++|+|... | + ....|.+.+++
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 4589999999999999999999431 0 1 11357777766
No 295
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.95 E-value=0.012 Score=60.35 Aligned_cols=27 Identities=22% Similarity=0.454 Sum_probs=22.3
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 195 ~pGe~~~llGpnGSGKSTLLk~LaG~l 221 (875)
.++.+++|.|++||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345789999999999999999998654
No 296
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.91 E-value=0.0091 Score=58.54 Aligned_cols=26 Identities=35% Similarity=0.466 Sum_probs=18.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 196 pGe~~~llGpnGSGKSTLLk~LaG~l 221 (875)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998654
No 297
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.89 E-value=0.012 Score=56.09 Aligned_cols=23 Identities=13% Similarity=0.365 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
.++|+|++|+|||||++.|.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
No 298
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.88 E-value=0.014 Score=58.47 Aligned_cols=26 Identities=58% Similarity=0.804 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 196 pGe~~~llGpnGSGKSTLLk~LaG~l 221 (875)
.+.+++|.|++||||||+.+.|+..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999998654
No 299
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.86 E-value=0.011 Score=63.14 Aligned_cols=28 Identities=46% Similarity=0.625 Sum_probs=24.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 002833 196 PSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (875)
Q Consensus 196 pGe~~~llGpnGSGKSTLLk~LaG~l~~ 223 (875)
|...++|.||||+|||||.++|++.+..
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 4568999999999999999999998754
No 300
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.85 E-value=0.011 Score=56.31 Aligned_cols=24 Identities=42% Similarity=0.677 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcC
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKLG 222 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l~ 222 (875)
-++|+|++|+|||||++.+.|...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 378999999999999999987643
No 301
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.82 E-value=0.013 Score=56.21 Aligned_cols=23 Identities=52% Similarity=0.793 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-++|+|++|+|||||++.|.|..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 47999999999999999999864
No 302
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.82 E-value=0.013 Score=55.82 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 002833 199 MTLLLGPPGAGKTTLMLALAGK 220 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~ 220 (875)
.++|+|++|+|||||++.|.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 303
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.81 E-value=0.015 Score=59.89 Aligned_cols=27 Identities=33% Similarity=0.565 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 195 ~pGe~~~llGpnGSGKSTLLk~LaG~l 221 (875)
+...++.|+|||||||+|..+.|+-.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999655
No 304
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.81 E-value=0.013 Score=55.52 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998653
No 305
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.81 E-value=0.013 Score=57.75 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 198 e~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-.++|+|++|+|||||++.|++..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999999864
No 306
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.75 E-value=0.012 Score=58.97 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 78999999999999999999865
No 307
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.73 E-value=0.014 Score=55.41 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-++|+|++|+|||||++.|.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999998753
No 308
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.72 E-value=0.013 Score=55.28 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
.++|+|++|+|||||++.|.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37999999999999999998764
No 309
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.72 E-value=0.014 Score=55.20 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
.++|+|++|+|||||++.|.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
No 310
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.69 E-value=0.015 Score=57.50 Aligned_cols=24 Identities=33% Similarity=0.394 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcC
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKLG 222 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l~ 222 (875)
+++|.|++||||||+.+.|+-.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 579999999999999999998763
No 311
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.68 E-value=0.011 Score=65.85 Aligned_cols=45 Identities=18% Similarity=0.112 Sum_probs=33.4
Q ss_pred cCCcEEEEeCCCCCCC---HHHHHHHHHHHHHHHHhCCcEEEEeecCCc
Q 002833 359 GTANVLYMDEISTGLD---SSTTFQICKFLKQMVHILDVTMIVALLQPA 404 (875)
Q Consensus 359 ~~p~iLlLDEPTsGLD---s~t~~~i~~~L~~l~~~~~~tviisi~q~~ 404 (875)
..|.++++||.=.=++ +.....+.+.+++..+ .|..++++++.|.
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk-~g~~~~~~tQ~~~ 308 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRK-YNGSLIVISQNVI 308 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGG-GTCEEEEEESCGG
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhh-hCeEEEEEcCCHH
Confidence 4688999999988884 5666777777777654 6777777766554
No 312
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.67 E-value=0.017 Score=60.75 Aligned_cols=27 Identities=37% Similarity=0.497 Sum_probs=23.3
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 195 ~pGe~~~llGpnGSGKSTLLk~LaG~l 221 (875)
.++.++.|.|+|||||||+.+.|+..+
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 346789999999999999999999764
No 313
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.66 E-value=0.015 Score=55.51 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-++|+|++|+|||||++.|.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999999865
No 314
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.66 E-value=0.016 Score=58.68 Aligned_cols=23 Identities=39% Similarity=0.537 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
.++|.||+||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998654
No 315
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.66 E-value=0.015 Score=55.54 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcCc
Q 002833 200 TLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 200 ~~llGpnGSGKSTLLk~LaG~l 221 (875)
++|+|++|+|||||++.+.|..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 7899999999999999998754
No 316
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.66 E-value=0.014 Score=56.22 Aligned_cols=23 Identities=35% Similarity=0.680 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-++|+|++|+|||||++.|.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 317
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.63 E-value=0.014 Score=55.61 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-++|+|++|+|||||++.|.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37899999999999999998754
No 318
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.63 E-value=0.016 Score=58.81 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 002833 196 PSRMTLLLGPPGAGKTTLMLALAGKLG 222 (875)
Q Consensus 196 pGe~~~llGpnGSGKSTLLk~LaG~l~ 222 (875)
++..++|.||+|+|||||++.++..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999997654
No 319
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.60 E-value=0.016 Score=55.40 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999999753
No 320
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.60 E-value=0.015 Score=55.27 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-++|+|++|+|||||++.|.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998764
No 321
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.57 E-value=0.016 Score=55.89 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-++|+|++|+|||||++.|.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
No 322
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.56 E-value=0.018 Score=56.55 Aligned_cols=25 Identities=28% Similarity=0.561 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 197 SRMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 197 Ge~~~llGpnGSGKSTLLk~LaG~l 221 (875)
..+++|.|++||||||+.+.|+..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998654
No 323
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.56 E-value=0.018 Score=56.80 Aligned_cols=23 Identities=35% Similarity=0.351 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57999999999999999999766
No 324
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.55 E-value=0.018 Score=57.55 Aligned_cols=25 Identities=36% Similarity=0.510 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 197 SRMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 197 Ge~~~llGpnGSGKSTLLk~LaG~l 221 (875)
..+++|.|++||||||+.+.|+..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3578999999999999999998543
No 325
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.53 E-value=0.017 Score=58.40 Aligned_cols=23 Identities=39% Similarity=0.494 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
.++|+||+||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998654
No 326
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.53 E-value=0.016 Score=55.02 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 002833 199 MTLLLGPPGAGKTTLMLALAGK 220 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~ 220 (875)
-++|+|++|+|||||++.|.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999875
No 327
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.52 E-value=0.015 Score=59.26 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 196 pGe~~~llGpnGSGKSTLLk~LaG~l 221 (875)
.+..+.|+|++||||||+.+.|+-.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999998665
No 328
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.50 E-value=0.019 Score=59.73 Aligned_cols=26 Identities=38% Similarity=0.604 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 196 pGe~~~llGpnGSGKSTLLk~LaG~l 221 (875)
++-.++|+|||||||||+.+.|+-.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998654
No 329
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.50 E-value=0.019 Score=55.68 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 198 e~~~llGpnGSGKSTLLk~LaG~l 221 (875)
+.++|.|++||||||+.+.|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999999765
No 330
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.49 E-value=0.021 Score=55.08 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 197 SRMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 197 Ge~~~llGpnGSGKSTLLk~LaG~l 221 (875)
.-.++|+|++|+|||||++.|.+..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4468999999999999999998753
No 331
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.48 E-value=0.017 Score=55.74 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-++|+|++|+|||||++.|.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998754
No 332
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.47 E-value=0.016 Score=57.06 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
.++|+|++|+|||||++.|.|..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999863
No 333
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.45 E-value=0.015 Score=57.15 Aligned_cols=24 Identities=42% Similarity=0.621 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 198 e~~~llGpnGSGKSTLLk~LaG~l 221 (875)
.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998754
No 334
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.45 E-value=0.016 Score=56.10 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998754
No 335
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.43 E-value=0.017 Score=55.66 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-++|+|++|+|||||++.|.+..
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999998863
No 336
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.41 E-value=0.018 Score=56.47 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-++|+|++|+|||||++.|.|..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999864
No 337
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=94.40 E-value=0.025 Score=60.15 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
.++|+|+||+|||||++.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
No 338
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.39 E-value=0.018 Score=54.74 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 002833 199 MTLLLGPPGAGKTTLMLALAGK 220 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~ 220 (875)
-++|+|++|+|||||++.|.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 339
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.39 E-value=0.022 Score=55.18 Aligned_cols=27 Identities=33% Similarity=0.603 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 002833 196 PSRMTLLLGPPGAGKTTLMLALAGKLG 222 (875)
Q Consensus 196 pGe~~~llGpnGSGKSTLLk~LaG~l~ 222 (875)
.+..++|.||+|+|||||++.++..+.
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 456789999999999999999998753
No 340
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.38 E-value=0.16 Score=52.63 Aligned_cols=53 Identities=26% Similarity=0.251 Sum_probs=42.7
Q ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeecC---------CchhHHhhcCeEEEEe
Q 002833 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQ---------PAPETYDLFDDIILLS 418 (875)
Q Consensus 359 ~~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~q---------~~~ei~~lfD~vilL~ 418 (875)
.+.+++++||.---.| +.+.++.+++ .|+.+|++-+. +++++..++|.|.-|.
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~-~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMAN-AGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHh-CCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6779999999987654 5555555554 68999999888 8999999999999875
No 341
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.37 E-value=0.017 Score=56.68 Aligned_cols=22 Identities=55% Similarity=0.658 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 002833 199 MTLLLGPPGAGKTTLMLALAGK 220 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~ 220 (875)
.++|+|++|+|||||++.|.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
No 342
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.35 E-value=0.022 Score=55.00 Aligned_cols=23 Identities=30% Similarity=0.306 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998754
No 343
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.33 E-value=0.021 Score=55.11 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-++|+|++|+|||||++.|.+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 47999999999999999998754
No 344
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.33 E-value=0.019 Score=55.83 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-++|+|++|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999999754
No 345
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.33 E-value=0.019 Score=57.42 Aligned_cols=25 Identities=40% Similarity=0.529 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcC
Q 002833 198 RMTLLLGPPGAGKTTLMLALAGKLG 222 (875)
Q Consensus 198 e~~~llGpnGSGKSTLLk~LaG~l~ 222 (875)
..+.|.||+|+|||||+++|+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6789999999999999999998764
No 346
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.29 E-value=0.018 Score=56.14 Aligned_cols=22 Identities=36% Similarity=0.631 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCc
Q 002833 200 TLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 200 ~~llGpnGSGKSTLLk~LaG~l 221 (875)
++|+|++|+|||||++.|.|..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 6899999999999999999864
No 347
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.27 E-value=0.019 Score=56.26 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
.++|+|++|+|||||++.|.|..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58999999999999999999864
No 348
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.26 E-value=0.021 Score=55.94 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=22.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCC
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKLGK 223 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l~~ 223 (875)
-++|+|++|+|||||++.|.|....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 4789999999999999999997654
No 349
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.26 E-value=0.02 Score=54.68 Aligned_cols=23 Identities=43% Similarity=0.560 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 002833 198 RMTLLLGPPGAGKTTLMLALAGK 220 (875)
Q Consensus 198 e~~~llGpnGSGKSTLLk~LaG~ 220 (875)
-.++|+|++|+|||||++.|.+.
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999764
No 350
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.25 E-value=0.02 Score=55.79 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
.++|+|++|+|||||++.|.+..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999753
No 351
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.25 E-value=0.02 Score=59.77 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcC
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKLG 222 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l~ 222 (875)
.++|+|++|+|||||++.|.|...
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 579999999999999999998643
No 352
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.23 E-value=0.021 Score=58.15 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 197 SRMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 197 Ge~~~llGpnGSGKSTLLk~LaG~l 221 (875)
|-.++|+|++||||||+.+.|+..+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998765
No 353
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.19 E-value=0.021 Score=56.24 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-++|+|++|+|||||++.|.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999854
No 354
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.17 E-value=0.021 Score=54.97 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-++|+|++|+|||||++.|.+..
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998653
No 355
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.15 E-value=0.041 Score=55.91 Aligned_cols=37 Identities=24% Similarity=0.258 Sum_probs=29.4
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l 221 (875)
...++..- ....|..++|+||+|||||||...|+.+.
T Consensus 22 ~~~lHa~~-v~~~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 22 RRSMHGVL-VDIYGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CCCEESEE-EEETTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred ceeeeEEE-EEECCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 34566644 44578999999999999999999998654
No 356
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.14 E-value=0.022 Score=54.08 Aligned_cols=21 Identities=38% Similarity=0.518 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 002833 200 TLLLGPPGAGKTTLMLALAGK 220 (875)
Q Consensus 200 ~~llGpnGSGKSTLLk~LaG~ 220 (875)
++|+|++|+|||||++.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999763
No 357
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.11 E-value=0.023 Score=54.70 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-++|+|++|+|||||++.|.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999999764
No 358
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=94.07 E-value=0.036 Score=60.22 Aligned_cols=36 Identities=28% Similarity=0.258 Sum_probs=31.8
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~ 220 (875)
...+|+....+ .|.-++|+|+||+|||||...|.++
T Consensus 132 ~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 132 TTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred ceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 45888977777 8999999999999999999999874
No 359
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.06 E-value=0.023 Score=54.85 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-++|+|++|+|||||++.|.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998754
No 360
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.06 E-value=0.024 Score=54.80 Aligned_cols=23 Identities=39% Similarity=0.608 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-++|+|++|+|||||++.|.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998764
No 361
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.05 E-value=0.016 Score=56.32 Aligned_cols=22 Identities=45% Similarity=0.576 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 002833 198 RMTLLLGPPGAGKTTLMLALAG 219 (875)
Q Consensus 198 e~~~llGpnGSGKSTLLk~LaG 219 (875)
-.++|+|++|+|||||++.|.+
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999874
No 362
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.05 E-value=0.023 Score=55.01 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
.++|+|++|+|||||++.|.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 48999999999999999999753
No 363
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.05 E-value=0.025 Score=57.62 Aligned_cols=23 Identities=48% Similarity=0.730 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
++.|+|||||||+|.-+.|+-.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999655
No 364
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.00 E-value=0.023 Score=59.79 Aligned_cols=23 Identities=48% Similarity=0.663 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
.++|+|++|||||||++.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999873
No 365
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.94 E-value=0.025 Score=56.97 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999865
No 366
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.94 E-value=0.024 Score=55.14 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-++|+|++|+|||||++.|.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998764
No 367
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.93 E-value=0.028 Score=57.54 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
.++|.|++||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998654
No 368
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=93.91 E-value=0.027 Score=60.79 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
.++|+|+||+|||||++.|.|..
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999999863
No 369
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.90 E-value=0.026 Score=55.33 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
.++|+|++|+|||||++.|++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999999764
No 370
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.86 E-value=0.027 Score=55.95 Aligned_cols=23 Identities=39% Similarity=0.605 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998864
No 371
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=93.84 E-value=0.027 Score=54.94 Aligned_cols=26 Identities=35% Similarity=0.446 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 196 pGe~~~llGpnGSGKSTLLk~LaG~l 221 (875)
+.--++|+|++|+|||||++.+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999998754
No 372
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.83 E-value=0.027 Score=55.80 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-++|+|++|+|||||++.|.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47999999999999999998754
No 373
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=93.82 E-value=0.028 Score=60.69 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
.++|+|++|+|||||++.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999999864
No 374
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.81 E-value=0.027 Score=55.50 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 002833 199 MTLLLGPPGAGKTTLMLALAGK 220 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~ 220 (875)
-++|+|++|+|||||++.|.+.
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999999874
No 375
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.79 E-value=0.032 Score=57.39 Aligned_cols=26 Identities=46% Similarity=0.662 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 196 pGe~~~llGpnGSGKSTLLk~LaG~l 221 (875)
.+..+.|+|++||||||+.+.|+-.+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999998765
No 376
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.79 E-value=0.028 Score=55.21 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-++|+|++|+|||||++.|.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998764
No 377
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.76 E-value=0.028 Score=55.14 Aligned_cols=23 Identities=39% Similarity=0.664 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-++|+|++|+|||||++.|.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 38999999999999999999854
No 378
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=93.75 E-value=0.028 Score=60.35 Aligned_cols=23 Identities=17% Similarity=0.502 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
.++|+|++|||||||++.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999974
No 379
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.75 E-value=0.0092 Score=60.12 Aligned_cols=24 Identities=38% Similarity=0.486 Sum_probs=21.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcC
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKLG 222 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l~ 222 (875)
.++|.||+|+|||||++.++..+.
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 789999999999999999987654
No 380
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.73 E-value=0.028 Score=55.50 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-++|+|++|+|||||++.|.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998764
No 381
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.73 E-value=0.028 Score=55.04 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-++|+|++|+|||||++.|.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 382
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.73 E-value=0.03 Score=56.69 Aligned_cols=23 Identities=39% Similarity=0.459 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
.++|.|++||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36899999999999999998654
No 383
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.70 E-value=0.03 Score=54.44 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-++|+|++|+|||||++.|.+..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998763
No 384
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.66 E-value=0.028 Score=54.46 Aligned_cols=27 Identities=41% Similarity=0.605 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 002833 196 PSRMTLLLGPPGAGKTTLMLALAGKLG 222 (875)
Q Consensus 196 pGe~~~llGpnGSGKSTLLk~LaG~l~ 222 (875)
.+..++|.||+|+|||||++.++..+.
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 355679999999999999999998764
No 385
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=93.64 E-value=0.028 Score=59.53 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-++|+|++|+|||||++.|.|.-
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37999999999999999998753
No 386
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.64 E-value=0.032 Score=55.39 Aligned_cols=23 Identities=26% Similarity=0.509 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998764
No 387
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=93.64 E-value=0.031 Score=58.83 Aligned_cols=23 Identities=43% Similarity=0.577 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
.++|+|++|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999853
No 388
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.64 E-value=0.031 Score=54.17 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 002833 199 MTLLLGPPGAGKTTLMLALAGK 220 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~ 220 (875)
-++|+|++|+|||||++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 389
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.63 E-value=0.025 Score=56.36 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
.++|+|++|+|||||++.++|..
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~~ 47 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGLQ 47 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999998653
No 390
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=93.61 E-value=0.029 Score=62.43 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=20.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcCc
Q 002833 200 TLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 200 ~~llGpnGSGKSTLLk~LaG~l 221 (875)
++|+|+||+|||||+++|+|..
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999999864
No 391
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.60 E-value=0.031 Score=58.31 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
.++|+|++|+|||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 392
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.55 E-value=0.031 Score=55.63 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-++|+|++|+|||||++.|.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 58999999999999999999864
No 393
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.55 E-value=0.036 Score=55.83 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcC
Q 002833 197 SRMTLLLGPPGAGKTTLMLALAGK 220 (875)
Q Consensus 197 Ge~~~llGpnGSGKSTLLk~LaG~ 220 (875)
..+++|.|++||||||+.+.|+..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 357899999999999999999864
No 394
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.54 E-value=0.03 Score=58.08 Aligned_cols=30 Identities=27% Similarity=0.353 Sum_probs=22.7
Q ss_pred EEeCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 002833 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (875)
Q Consensus 193 ~i~pGe~~~llGpnGSGKSTLLk~LaG~l~ 222 (875)
...+|.++.|.|++||||||+.+.|+..+.
T Consensus 21 ~m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 21 SMARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp --CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346789999999999999999999998764
No 395
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.53 E-value=0.033 Score=54.63 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-++|+|++|+|||||++.|.+..
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998643
No 396
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.53 E-value=0.035 Score=57.91 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 198 e~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998754
No 397
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.51 E-value=0.032 Score=54.96 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-++|+|++|+|||||++.|.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 398
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=93.51 E-value=0.032 Score=59.19 Aligned_cols=23 Identities=43% Similarity=0.613 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
.++|+|.+|||||||++.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
No 399
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.50 E-value=0.032 Score=54.05 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 002833 199 MTLLLGPPGAGKTTLMLALAGK 220 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~ 220 (875)
.++|+|++|+|||||++.|.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999853
No 400
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.48 E-value=0.032 Score=55.57 Aligned_cols=23 Identities=35% Similarity=0.642 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 401
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=93.47 E-value=0.033 Score=55.08 Aligned_cols=23 Identities=30% Similarity=0.592 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-++|+|++|+|||||++.|.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 402
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.47 E-value=0.035 Score=55.99 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 198 e~~~llGpnGSGKSTLLk~LaG~l 221 (875)
..++|+|++|+|||||++.|++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999765
No 403
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.47 E-value=0.034 Score=54.42 Aligned_cols=23 Identities=30% Similarity=0.663 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-++|+|++|+|||||++.|.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998764
No 404
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.46 E-value=0.038 Score=58.89 Aligned_cols=23 Identities=35% Similarity=0.638 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 002833 198 RMTLLLGPPGAGKTTLMLALAGK 220 (875)
Q Consensus 198 e~~~llGpnGSGKSTLLk~LaG~ 220 (875)
.++.|.|+|||||||+.+.|+-.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999863
No 405
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.43 E-value=0.035 Score=54.38 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 002833 199 MTLLLGPPGAGKTTLMLALAGK 220 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~ 220 (875)
.++|+|++|+|||||++.|.+.
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999864
No 406
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.43 E-value=0.035 Score=54.60 Aligned_cols=23 Identities=30% Similarity=0.303 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-++|+|++|+|||||++.|.+..
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
No 407
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=93.40 E-value=0.029 Score=55.16 Aligned_cols=23 Identities=35% Similarity=0.379 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
.++|+|++|+|||||++.|.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998865
No 408
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.39 E-value=0.036 Score=53.59 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998653
No 409
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.39 E-value=0.036 Score=54.60 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-++|+|++|+|||||++.|.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 410
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=93.39 E-value=0.036 Score=55.09 Aligned_cols=22 Identities=41% Similarity=0.638 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 002833 199 MTLLLGPPGAGKTTLMLALAGK 220 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~ 220 (875)
-++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999974
No 411
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.38 E-value=0.035 Score=55.31 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 198 e~~~llGpnGSGKSTLLk~LaG~l 221 (875)
--++|+|++|+|||||++.|.+..
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999998753
No 412
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.35 E-value=0.036 Score=55.19 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-++|+|++|+|||||++.|.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998653
No 413
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.34 E-value=0.037 Score=54.72 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-++|+|++|+|||||++.|.+..
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998753
No 414
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.30 E-value=0.038 Score=54.37 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
.++|+|++|+|||||++.|.+..
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998754
No 415
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.28 E-value=0.038 Score=54.89 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 198 e~~~llGpnGSGKSTLLk~LaG~l 221 (875)
--++|+|++|+|||||++.|.+..
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 367999999999999999998754
No 416
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.27 E-value=0.033 Score=54.29 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 002833 199 MTLLLGPPGAGKTTLMLALAGK 220 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~ 220 (875)
-++|+|++|+|||||++.|.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999875
No 417
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=93.26 E-value=0.042 Score=59.90 Aligned_cols=29 Identities=34% Similarity=0.428 Sum_probs=26.3
Q ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhcC
Q 002833 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (875)
Q Consensus 192 ~~i~pGe~~~llGpnGSGKSTLLk~LaG~ 220 (875)
+-+.+|..++|.||||+|||||...++..
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 67899999999999999999999999853
No 418
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.25 E-value=0.035 Score=58.92 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
.++|+|.+|+|||||++.|.|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999874
No 419
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.24 E-value=0.041 Score=55.29 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-++|+|++|+|||||++.|.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 420
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.24 E-value=0.04 Score=62.21 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=24.0
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 194 VKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 194 i~pGe~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-.+.+++.|+|+|||||||+.+.|+..+
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 3457899999999999999999998644
No 421
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.24 E-value=0.04 Score=58.69 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 002833 198 RMTLLLGPPGAGKTTLMLALA 218 (875)
Q Consensus 198 e~~~llGpnGSGKSTLLk~La 218 (875)
.+++|.|++||||||+.+.|+
T Consensus 76 ~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999998
No 422
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.24 E-value=0.039 Score=54.39 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998864
No 423
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.23 E-value=0.05 Score=59.62 Aligned_cols=26 Identities=31% Similarity=0.671 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 196 pGe~~~llGpnGSGKSTLLk~LaG~l 221 (875)
++.++.|+||+|||||||...|+..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 56689999999999999999999775
No 424
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.22 E-value=0.039 Score=56.28 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 002833 199 MTLLLGPPGAGKTTLMLALAGK 220 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~ 220 (875)
.++|+|++|+|||||++.|.|.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
No 425
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.18 E-value=0.12 Score=68.45 Aligned_cols=38 Identities=29% Similarity=0.346 Sum_probs=32.4
Q ss_pred ccccceeE--EEeCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 002833 185 RILKDVSG--IVKPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (875)
Q Consensus 185 ~IL~~vs~--~i~pGe~~~llGpnGSGKSTLLk~LaG~l~ 222 (875)
.-|+.+-+ =++||+++.|-|+||+|||||+..++....
T Consensus 718 ~eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a 757 (2050)
T 3cmu_A 718 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 757 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred hHHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34677765 799999999999999999999999987653
No 426
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.18 E-value=0.042 Score=54.45 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=21.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCcCC
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKLGK 223 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l~~ 223 (875)
-++|+|++|+|||||++.+.|...+
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~~ 46 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMSP 46 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCCG
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4899999999999999999986543
No 427
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.11 E-value=0.052 Score=55.60 Aligned_cols=29 Identities=38% Similarity=0.421 Sum_probs=25.5
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 002833 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (875)
Q Consensus 195 ~pGe~~~llGpnGSGKSTLLk~LaG~l~~ 223 (875)
.+|.++.|.|++||||||+.+.|+..+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999987754
No 428
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.10 E-value=0.04 Score=55.11 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-++|+|++|+|||||++.|.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999854
No 429
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.09 E-value=0.033 Score=53.82 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 002833 199 MTLLLGPPGAGKTTLMLALAGK 220 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~ 220 (875)
-++|+|++|+|||||++.+.+.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999874
No 430
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.07 E-value=0.04 Score=55.29 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-++|+|++|+|||||++.|.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999988653
No 431
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=93.04 E-value=0.022 Score=57.45 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
.++|+|++|+|||||++.|.|..
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999874
No 432
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=92.97 E-value=0.047 Score=54.02 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-++|+|++|+|||||++.+.+..
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998753
No 433
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=92.96 E-value=0.03 Score=54.37 Aligned_cols=22 Identities=32% Similarity=0.632 Sum_probs=9.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 002833 199 MTLLLGPPGAGKTTLMLALAGK 220 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~ 220 (875)
-++|+|++|+|||||++.|.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999864
No 434
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.96 E-value=0.046 Score=53.81 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 57999999999999999998753
No 435
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=92.95 E-value=0.043 Score=55.21 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-++|+|++|+|||||++.|.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999864
No 436
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=92.93 E-value=0.042 Score=54.39 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 002833 198 RMTLLLGPPGAGKTTLMLALAGK 220 (875)
Q Consensus 198 e~~~llGpnGSGKSTLLk~LaG~ 220 (875)
--++|+|++|+|||||++.+.+.
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCSS
T ss_pred cEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999753
No 437
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=92.88 E-value=0.047 Score=55.03 Aligned_cols=22 Identities=36% Similarity=0.674 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 002833 199 MTLLLGPPGAGKTTLMLALAGK 220 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~ 220 (875)
-++|+|++|+|||||++.|.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
No 438
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.82 E-value=0.019 Score=62.36 Aligned_cols=23 Identities=52% Similarity=0.876 Sum_probs=21.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcCcC
Q 002833 200 TLLLGPPGAGKTTLMLALAGKLG 222 (875)
Q Consensus 200 ~~llGpnGSGKSTLLk~LaG~l~ 222 (875)
++|.||||+|||||+++|++.+.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999998763
No 439
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.82 E-value=0.036 Score=58.10 Aligned_cols=27 Identities=22% Similarity=0.182 Sum_probs=24.0
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 195 ~pGe~~~llGpnGSGKSTLLk~LaG~l 221 (875)
+++.+++|.|++||||||+.+.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 577899999999999999999998765
No 440
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=92.82 E-value=0.046 Score=54.39 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999999754
No 441
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=92.81 E-value=0.048 Score=54.62 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
.++|+|++|+|||||++.|.+..
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
No 442
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=92.79 E-value=0.017 Score=60.56 Aligned_cols=32 Identities=41% Similarity=0.718 Sum_probs=24.4
Q ss_pred cceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 188 KDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 188 ~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l 221 (875)
.++......| ++|.||||+|||||+++|++..
T Consensus 37 ~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 37 ANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp HHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHHH
T ss_pred HHCCCCCCce--EEEECCCCCcHHHHHHHHHHHh
Confidence 3333334444 7899999999999999999865
No 443
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=92.69 E-value=0.041 Score=55.66 Aligned_cols=25 Identities=36% Similarity=0.469 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 197 SRMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 197 Ge~~~llGpnGSGKSTLLk~LaG~l 221 (875)
+.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578999999999999999999764
No 444
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.66 E-value=0.061 Score=53.64 Aligned_cols=53 Identities=15% Similarity=0.311 Sum_probs=35.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeec---------CCchhHHhhcCeEEEEe
Q 002833 360 TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL---------QPAPETYDLFDDIILLS 418 (875)
Q Consensus 360 ~p~iLlLDEPTsGLDs~t~~~i~~~L~~l~~~~~~tviisi~---------q~~~ei~~lfD~vilL~ 418 (875)
+++++++||.=. +|+ ++++.|+.+++. +..++++-+ .+.+....++|.|.-|.
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~-~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDR-GIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHT-TCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHC-CCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 568999999854 543 366677777765 778877655 22345566788776554
No 445
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=92.59 E-value=0.049 Score=55.96 Aligned_cols=29 Identities=31% Similarity=0.292 Sum_probs=26.1
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 002833 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (875)
Q Consensus 195 ~pGe~~~llGpnGSGKSTLLk~LaG~l~~ 223 (875)
++|.++.+.|++||||||+.+.|+..+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46899999999999999999999988754
No 446
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.58 E-value=0.062 Score=55.99 Aligned_cols=28 Identities=25% Similarity=0.451 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 002833 196 PSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (875)
Q Consensus 196 pGe~~~llGpnGSGKSTLLk~LaG~l~~ 223 (875)
+|.++.|.|++||||||+.+.|+..+..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6889999999999999999999987753
No 447
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.57 E-value=0.059 Score=57.38 Aligned_cols=28 Identities=43% Similarity=0.667 Sum_probs=24.2
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 002833 195 KPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (875)
Q Consensus 195 ~pGe~~~llGpnGSGKSTLLk~LaG~l~ 222 (875)
+++.-++|.||||+|||||.++++..+.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 4566799999999999999999998764
No 448
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=92.53 E-value=0.053 Score=58.10 Aligned_cols=27 Identities=22% Similarity=0.204 Sum_probs=22.9
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 195 ~pGe~~~llGpnGSGKSTLLk~LaG~l 221 (875)
++...++|.||||+|||+|.++|+..+
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 344578888999999999999999876
No 449
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.50 E-value=0.1 Score=51.86 Aligned_cols=33 Identities=27% Similarity=0.284 Sum_probs=26.8
Q ss_pred cccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhc
Q 002833 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAG 219 (875)
Q Consensus 186 IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG 219 (875)
.||. +.....|.-++|.|+||+|||||...|..
T Consensus 6 ~lHa-s~v~v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 6 TWHA-NFLVIDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEES-EEEEETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEE-EEEEECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 4444 44556899999999999999999998875
No 450
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.49 E-value=0.056 Score=53.16 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 002833 199 MTLLLGPPGAGKTTLMLALAGK 220 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~ 220 (875)
-++|+|++|+|||||++.|.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999875
No 451
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.45 E-value=0.057 Score=58.90 Aligned_cols=25 Identities=48% Similarity=0.708 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcC
Q 002833 198 RMTLLLGPPGAGKTTLMLALAGKLG 222 (875)
Q Consensus 198 e~~~llGpnGSGKSTLLk~LaG~l~ 222 (875)
.+++|+||+|||||||-+.|+..+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999998653
No 452
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.36 E-value=0.035 Score=59.58 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=19.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 196 pGe~~~llGpnGSGKSTLLk~LaG~l 221 (875)
++-+++|.||+||||||+.+.|+..+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998754
No 453
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=92.35 E-value=0.064 Score=56.64 Aligned_cols=25 Identities=36% Similarity=0.628 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcC
Q 002833 198 RMTLLLGPPGAGKTTLMLALAGKLG 222 (875)
Q Consensus 198 e~~~llGpnGSGKSTLLk~LaG~l~ 222 (875)
-.++|+|.||+|||||+|.|.|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 4689999999999999999998764
No 454
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=92.31 E-value=0.03 Score=56.28 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 002833 199 MTLLLGPPGAGKTTLMLALAGK 220 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~ 220 (875)
-++|+|++|+|||||++.|.|.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
No 455
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.30 E-value=0.056 Score=59.37 Aligned_cols=25 Identities=32% Similarity=0.635 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcC
Q 002833 198 RMTLLLGPPGAGKTTLMLALAGKLG 222 (875)
Q Consensus 198 e~~~llGpnGSGKSTLLk~LaG~l~ 222 (875)
.+++|.||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4789999999999999999998653
No 456
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=92.29 E-value=0.061 Score=53.66 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-++|+|++|+|||||++.|.+..
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 47999999999999999998653
No 457
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.27 E-value=0.075 Score=54.85 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=23.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCcC
Q 002833 197 SRMTLLLGPPGAGKTTLMLALAGKLG 222 (875)
Q Consensus 197 Ge~~~llGpnGSGKSTLLk~LaG~l~ 222 (875)
|.+++|-|++||||||+.+.|+..+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 67899999999999999999998763
No 458
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=92.26 E-value=0.066 Score=54.50 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
.++|+|++|+|||||++.+.|..
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGVH 61 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999999753
No 459
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=92.25 E-value=0.044 Score=53.69 Aligned_cols=21 Identities=38% Similarity=0.526 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 002833 199 MTLLLGPPGAGKTTLMLALAG 219 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG 219 (875)
-++|+|++|+|||||++.|.+
T Consensus 24 ~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999964
No 460
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.25 E-value=0.062 Score=56.37 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
.++|+|++|+|||||++.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999864
No 461
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=92.19 E-value=0.065 Score=54.31 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-++|+|++|+|||||++.|.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999764
No 462
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=92.16 E-value=0.062 Score=51.03 Aligned_cols=27 Identities=26% Similarity=0.220 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 002833 196 PSRMTLLLGPPGAGKTTLMLALAGKLG 222 (875)
Q Consensus 196 pGe~~~llGpnGSGKSTLLk~LaG~l~ 222 (875)
.+.-++|.||+|+|||+|.++|+....
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 344589999999999999999987653
No 463
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=92.15 E-value=0.025 Score=69.31 Aligned_cols=33 Identities=39% Similarity=0.573 Sum_probs=29.4
Q ss_pred eeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 002833 190 VSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (875)
Q Consensus 190 vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~ 222 (875)
.++.+.+|+.++|.||||+|||||.++|++.+.
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 355678999999999999999999999999874
No 464
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=92.13 E-value=0.16 Score=62.56 Aligned_cols=26 Identities=46% Similarity=0.599 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCcCC
Q 002833 198 RMTLLLGPPGAGKTTLMLALAGKLGK 223 (875)
Q Consensus 198 e~~~llGpnGSGKSTLLk~LaG~l~~ 223 (875)
..++|.||||+|||+|.++|+..+..
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 57899999999999999999987643
No 465
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=92.12 E-value=0.065 Score=56.46 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
.++|+|++|+|||||++.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999864
No 466
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=92.10 E-value=0.032 Score=55.22 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=4.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 002833 199 MTLLLGPPGAGKTTLMLALAGK 220 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~ 220 (875)
-++|+|++|+|||||++.|.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 467
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.09 E-value=0.08 Score=54.22 Aligned_cols=28 Identities=32% Similarity=0.391 Sum_probs=25.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 002833 196 PSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (875)
Q Consensus 196 pGe~~~llGpnGSGKSTLLk~LaG~l~~ 223 (875)
+|.++.+-|++||||||+.+.|+..+..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4889999999999999999999987754
No 468
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.07 E-value=0.072 Score=55.27 Aligned_cols=23 Identities=43% Similarity=0.605 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
.++|+|+|||||||+.+.|+-.+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999998655
No 469
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.06 E-value=0.07 Score=53.97 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 198 e~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-.++|+|++|+|||||++.|++..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 368899999999999999998754
No 470
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.04 E-value=0.09 Score=57.06 Aligned_cols=25 Identities=32% Similarity=0.624 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 197 SRMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 197 Ge~~~llGpnGSGKSTLLk~LaG~l 221 (875)
+.+++|+||+|||||||...|+-.+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4588999999999999999999765
No 471
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=91.99 E-value=0.076 Score=57.50 Aligned_cols=27 Identities=48% Similarity=0.754 Sum_probs=23.7
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 195 ~pGe~~~llGpnGSGKSTLLk~LaG~l 221 (875)
+|..-++|.||||+|||+|.++|+...
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 466679999999999999999999764
No 472
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=91.91 E-value=0.076 Score=52.63 Aligned_cols=22 Identities=55% Similarity=0.872 Sum_probs=20.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcCc
Q 002833 200 TLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 200 ~~llGpnGSGKSTLLk~LaG~l 221 (875)
++|.||+|+|||||++.++..+
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999998765
No 473
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=91.91 E-value=0.07 Score=53.32 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 002833 199 MTLLLGPPGAGKTTLMLALAGK 220 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~ 220 (875)
-++|+|++|+|||||++.+.+.
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 474
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=91.90 E-value=0.078 Score=57.98 Aligned_cols=29 Identities=38% Similarity=0.707 Sum_probs=25.4
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcCC
Q 002833 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (875)
Q Consensus 195 ~pGe~~~llGpnGSGKSTLLk~LaG~l~~ 223 (875)
.+|..++|.||||+|||||.++++..+..
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 35779999999999999999999987753
No 475
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=91.87 E-value=0.08 Score=55.57 Aligned_cols=27 Identities=41% Similarity=0.581 Sum_probs=23.0
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 195 ~pGe~~~llGpnGSGKSTLLk~LaG~l 221 (875)
++..-++|.||+|+|||||.++|+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 344578999999999999999999764
No 476
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=91.83 E-value=0.072 Score=53.20 Aligned_cols=23 Identities=17% Similarity=0.374 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-++|+|++|+|||||++.+.+..
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998653
No 477
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=91.79 E-value=0.062 Score=58.67 Aligned_cols=28 Identities=29% Similarity=0.417 Sum_probs=24.4
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 002833 195 KPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (875)
Q Consensus 195 ~pGe~~~llGpnGSGKSTLLk~LaG~l~ 222 (875)
..+..++|.||+|+|||||++.++..+.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999998763
No 478
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.78 E-value=0.075 Score=60.19 Aligned_cols=29 Identities=48% Similarity=0.801 Sum_probs=24.7
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 002833 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (875)
Q Consensus 194 i~pGe~~~llGpnGSGKSTLLk~LaG~l~ 222 (875)
++|-+=+++-||||+|||+|.++||+.+.
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 35556689999999999999999998764
No 479
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=91.74 E-value=0.097 Score=54.04 Aligned_cols=28 Identities=36% Similarity=0.297 Sum_probs=25.0
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 002833 195 KPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (875)
Q Consensus 195 ~pGe~~~llGpnGSGKSTLLk~LaG~l~ 222 (875)
.+|.++.|.|++||||||+.+.|+..+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3688999999999999999999998764
No 480
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.65 E-value=0.078 Score=60.16 Aligned_cols=29 Identities=38% Similarity=0.674 Sum_probs=24.6
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 002833 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (875)
Q Consensus 194 i~pGe~~~llGpnGSGKSTLLk~LaG~l~ 222 (875)
++|-.=++|-||||+|||+|.++||+...
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~e~~ 240 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAAQTN 240 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHHHhC
Confidence 34556688999999999999999998764
No 481
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=91.65 E-value=0.057 Score=55.12 Aligned_cols=28 Identities=14% Similarity=0.310 Sum_probs=23.7
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 194 VKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 194 i~pGe~~~llGpnGSGKSTLLk~LaG~l 221 (875)
+++...+++.||||+||||+..+|+..+
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 4445578999999999999999999865
No 482
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=91.61 E-value=0.082 Score=53.39 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 002833 199 MTLLLGPPGAGKTTLMLALAGK 220 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~ 220 (875)
-++|+|++|+|||||++.|.+.
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5789999999999999999875
No 483
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=91.56 E-value=0.076 Score=60.53 Aligned_cols=23 Identities=30% Similarity=0.641 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
.++|+|+||+|||||++.|+|..
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~~ 47 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGER 47 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68999999999999999998853
No 484
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.50 E-value=0.082 Score=60.00 Aligned_cols=29 Identities=52% Similarity=0.911 Sum_probs=24.9
Q ss_pred EeCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 002833 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (875)
Q Consensus 194 i~pGe~~~llGpnGSGKSTLLk~LaG~l~ 222 (875)
++|-.=++|-||||+|||+|.++||+...
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 45666789999999999999999998764
No 485
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=91.45 E-value=0.11 Score=59.53 Aligned_cols=38 Identities=21% Similarity=0.328 Sum_probs=30.1
Q ss_pred cccccceeEEEeCCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 002833 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (875)
Q Consensus 184 ~~IL~~vs~~i~pGe~~~llGpnGSGKSTLLk~LaG~l~ 222 (875)
..+++.+ ..+-.|+.++|+||||+|||||++.|++...
T Consensus 139 ir~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 139 IKVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp CHHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred chHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 3456666 4455788999999999999999999987643
No 486
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=91.31 E-value=0.089 Score=55.74 Aligned_cols=26 Identities=35% Similarity=0.575 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCcC
Q 002833 197 SRMTLLLGPPGAGKTTLMLALAGKLG 222 (875)
Q Consensus 197 Ge~~~llGpnGSGKSTLLk~LaG~l~ 222 (875)
+.-++|.||||+|||||.++|+..+.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45688999999999999999998763
No 487
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.16 E-value=0.11 Score=57.17 Aligned_cols=26 Identities=35% Similarity=0.411 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCcC
Q 002833 197 SRMTLLLGPPGAGKTTLMLALAGKLG 222 (875)
Q Consensus 197 Ge~~~llGpnGSGKSTLLk~LaG~l~ 222 (875)
...++|+|++|+|||||++.|++.+.
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999998764
No 488
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=91.14 E-value=0.11 Score=56.08 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCcC
Q 002833 196 PSRMTLLLGPPGAGKTTLMLALAGKLG 222 (875)
Q Consensus 196 pGe~~~llGpnGSGKSTLLk~LaG~l~ 222 (875)
++.-+.|.||+|+|||+|+++|+..+.
T Consensus 151 ~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 151 EQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp SCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999997653
No 489
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=91.07 E-value=0.13 Score=55.52 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 197 SRMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 197 Ge~~~llGpnGSGKSTLLk~LaG~l 221 (875)
+--++|+|++|+|||||++.+.+..
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3468999999999999999988764
No 490
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=91.01 E-value=0.12 Score=55.10 Aligned_cols=26 Identities=38% Similarity=0.475 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCcC
Q 002833 197 SRMTLLLGPPGAGKTTLMLALAGKLG 222 (875)
Q Consensus 197 Ge~~~llGpnGSGKSTLLk~LaG~l~ 222 (875)
+-.++|+|.||+|||||+|.|.|...
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CceEEEEecCCCchHHHHHHHhcCce
Confidence 34689999999999999999998753
No 491
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.01 E-value=0.13 Score=55.80 Aligned_cols=25 Identities=36% Similarity=0.663 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 197 SRMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 197 Ge~~~llGpnGSGKSTLLk~LaG~l 221 (875)
..+++|+||+|||||||...|+..+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 3578999999999999999999765
No 492
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=90.92 E-value=0.072 Score=58.56 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
.++|+|.+|+|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999964
No 493
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=90.85 E-value=0.1 Score=58.53 Aligned_cols=41 Identities=12% Similarity=-0.119 Sum_probs=29.9
Q ss_pred HHHHHHHHhCCCccccccccCccCCCCCHHHHHHHHHHHHHhcCCcEEEE
Q 002833 317 VTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYM 366 (875)
Q Consensus 317 ~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGerkRVsIA~aLv~~p~iLlL 366 (875)
.+..+++.++.... . ..+|.+|.+++.-...+...|-++++
T Consensus 181 ~~~~~l~~l~~~~~----~-----~~~~~~e~~~l~~~~~~~~kP~i~v~ 221 (397)
T 1wxq_A 181 DVWEAMHKLNLPED----P-----TKWSQDDLLAFASEIRRVNKPMVIAA 221 (397)
T ss_dssp HHHHHHHHTTCCSC----G-----GGCCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred HHHHHHHHhccCCc----c-----ccCCHHHHHHHHHhhhccCCCEEEEE
Confidence 45667777776543 1 24899998888777777778888887
No 494
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=90.83 E-value=0.1 Score=57.55 Aligned_cols=27 Identities=48% Similarity=0.754 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 195 ~pGe~~~llGpnGSGKSTLLk~LaG~l 221 (875)
++..-++|.||||+|||||.++|+..+
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 455668999999999999999999865
No 495
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=90.70 E-value=0.12 Score=56.55 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 196 pGe~~~llGpnGSGKSTLLk~LaG~l 221 (875)
++..++|.||+|+|||||++.++..+
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999765
No 496
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=90.67 E-value=0.11 Score=57.15 Aligned_cols=26 Identities=46% Similarity=0.612 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 196 pGe~~~llGpnGSGKSTLLk~LaG~l 221 (875)
++.-++|.||||+||||+.++|+..+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45578999999999999999999765
No 497
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=90.49 E-value=0.2 Score=56.75 Aligned_cols=23 Identities=39% Similarity=0.608 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
.++|+|.|++|||||++.|+|..
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~ 25 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKK 25 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 498
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=90.46 E-value=0.11 Score=61.07 Aligned_cols=24 Identities=38% Similarity=0.448 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCc
Q 002833 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 198 e~~~llGpnGSGKSTLLk~LaG~l 221 (875)
-.++|+|+||+|||||+|.|.|..
T Consensus 39 ~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 39 VVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred cEEEEECCCCCCHHHHHHhHcCCC
Confidence 478999999999999999999974
No 499
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=90.46 E-value=0.11 Score=58.70 Aligned_cols=23 Identities=30% Similarity=0.641 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCc
Q 002833 199 MTLLLGPPGAGKTTLMLALAGKL 221 (875)
Q Consensus 199 ~~~llGpnGSGKSTLLk~LaG~l 221 (875)
.++|+|+||+|||||++.|+|..
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 500
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=90.36 E-value=0.08 Score=50.18 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHhcC
Q 002833 197 SRMTLLLGPPGAGKTTLMLALAGK 220 (875)
Q Consensus 197 Ge~~~llGpnGSGKSTLLk~LaG~ 220 (875)
+.-++|.||+|+|||++.++|+..
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCcEEEECCCCccHHHHHHHHHHh
Confidence 445889999999999999998754
Done!