BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002834
(875 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AHY|A Chain A, Crystal Structure Of Beta-Glucosidase 2 From Fungus
Trichoderma Reesei In Complex With Tris
pdb|3AHY|B Chain B, Crystal Structure Of Beta-Glucosidase 2 From Fungus
Trichoderma Reesei In Complex With Tris
pdb|3AHY|C Chain C, Crystal Structure Of Beta-Glucosidase 2 From Fungus
Trichoderma Reesei In Complex With Tris
pdb|3AHY|D Chain D, Crystal Structure Of Beta-Glucosidase 2 From Fungus
Trichoderma Reesei In Complex With Tris
Length = 473
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 80/197 (40%), Gaps = 38/197 (19%)
Query: 372 GKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRRDLISWNSML---- 427
G I F P D + G Y + ++ A ++ R ISW+ ++
Sbjct: 34 GPSIWDTFCAQPGKIADGSSGVTACDSYNRTAEDIALLKSLGAKSYRFSISWSRIIPEGG 93
Query: 428 --DAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTG 485
DA +++G + ++ ++ +L GI P +T+ H+ L EG+ + G L +T
Sbjct: 94 RGDAVNQAGID-HYVKFVDDLLDAGITP----FITLFHWD---LPEGLHQRYGGLLNRTE 145
Query: 486 LLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFN-PVISGYANCGSADEA 544
L D E+ YA +F++L + RN +TFN P+ S GS
Sbjct: 146 FPL-DFEN-----------------YARVMFRALPKVRNWITFNEPLCSAIPGYGSG--- 184
Query: 545 FMTFSRIYARDLTPWNL 561
TF+ PW +
Sbjct: 185 --TFAPGRQSTSEPWTV 199
>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|D Chain D, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|F Chain F, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|H Chain H, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
Length = 283
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 245 PNYATILNILPI-CASLD--EDVGYFFGREIHCYVLRRAELIADVS-VCNALVSFYLRFG 300
P+ A LN L + C + E+V Y++ R + Y R +V+ N L S YL+ G
Sbjct: 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQG 183
Query: 301 RTEEAELLFRRMKSR 315
+ ++AE L++ + +R
Sbjct: 184 KYQDAETLYKEILTR 198
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 119 FACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSACAR 158
+ACSH D +MH + PN V A V S C +
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGK 55
>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
pdb|3CEQ|B Chain B, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
Length = 283
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 262 EDVGYFFGREIHCYVLRRAELIADVS-VCNALVSFYLRFGRTEEAELLFRRMKSR 315
E+V Y++ R + Y R +V+ N L S YL+ G+ ++AE L++ + +R
Sbjct: 144 EEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198
>pdb|4AIB|A Chain A, Crystal Structure Of Ornithine Decarboxylase From
Entamoeba Histolytica.
pdb|4AIB|B Chain B, Crystal Structure Of Ornithine Decarboxylase From
Entamoeba Histolytica.
pdb|4AIB|C Chain C, Crystal Structure Of Ornithine Decarboxylase From
Entamoeba Histolytica.
pdb|4AIB|D Chain D, Crystal Structure Of Ornithine Decarboxylase From
Entamoeba Histolytica
Length = 395
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 17/97 (17%)
Query: 649 QCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAV------LSACS 702
+C+P+ +V L +G G A+L ++L+LG NP+ + + L S
Sbjct: 57 KCNPEPHLVKLLGELGC----GFDCASLNEIKEVLDLGFNPEDITYSQTFKPYNQLIEAS 112
Query: 703 HAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLAR 739
H G+ I SI++VQ I +YA + ++ R
Sbjct: 113 HLGI---NHTIVDSIDEVQKIA----KYAPKMGIMIR 142
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,680,516
Number of Sequences: 62578
Number of extensions: 1043179
Number of successful extensions: 2916
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2912
Number of HSP's gapped (non-prelim): 8
length of query: 875
length of database: 14,973,337
effective HSP length: 107
effective length of query: 768
effective length of database: 8,277,491
effective search space: 6357113088
effective search space used: 6357113088
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)