Query 002834
Match_columns 875
No_of_seqs 637 out of 4690
Neff 11.2
Searched_HMMs 46136
Date Thu Mar 28 11:44:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002834.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002834hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 4E-110 8E-115 975.1 83.4 725 106-875 48-773 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 1.6E-89 3.4E-94 801.6 73.9 676 3-728 48-727 (857)
3 PLN03081 pentatricopeptide (PP 100.0 2.1E-80 4.6E-85 706.9 61.5 526 314-875 84-610 (697)
4 PLN03081 pentatricopeptide (PP 100.0 3E-65 6.6E-70 582.4 50.9 475 106-590 84-562 (697)
5 PLN03218 maturation of RBCL 1; 100.0 4.9E-65 1.1E-69 579.4 52.2 475 39-599 366-855 (1060)
6 PLN03218 maturation of RBCL 1; 100.0 9.7E-64 2.1E-68 568.8 53.3 528 142-759 366-915 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 4.8E-42 1E-46 414.8 80.1 791 5-823 21-867 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.7E-41 5.8E-46 408.2 79.9 790 5-820 55-898 (899)
9 PRK11447 cellulose synthase su 100.0 2.1E-25 4.4E-30 267.8 67.3 649 83-824 33-743 (1157)
10 PRK09782 bacteriophage N4 rece 100.0 1.7E-23 3.7E-28 238.5 63.1 668 8-819 44-737 (987)
11 PRK11447 cellulose synthase su 100.0 8.6E-24 1.9E-28 253.9 63.8 666 46-796 31-751 (1157)
12 PRK09782 bacteriophage N4 rece 100.0 9.7E-23 2.1E-27 232.3 60.7 623 91-822 57-706 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 3.2E-22 7E-27 200.2 36.6 441 320-811 51-508 (966)
14 KOG2002 TPR-containing nuclear 99.9 4.1E-18 8.8E-23 180.8 51.5 592 126-823 146-799 (1018)
15 KOG4626 O-linked N-acetylgluco 99.9 2.8E-19 6.1E-24 179.4 35.3 368 319-770 118-501 (966)
16 KOG2002 TPR-containing nuclear 99.9 4.9E-17 1.1E-21 172.8 45.7 553 298-869 176-792 (1018)
17 TIGR00990 3a0801s09 mitochondr 99.8 8.1E-18 1.8E-22 189.9 38.4 417 391-821 129-570 (615)
18 PRK11788 tetratricopeptide rep 99.8 7.3E-18 1.6E-22 181.0 31.0 298 428-829 43-354 (389)
19 PRK10049 pgaA outer membrane p 99.8 9.9E-17 2.1E-21 184.2 37.9 391 392-822 18-456 (765)
20 KOG4318 Bicoid mRNA stability 99.8 7.1E-16 1.5E-20 161.8 38.4 718 26-823 10-809 (1088)
21 TIGR00990 3a0801s09 mitochondr 99.8 6.4E-16 1.4E-20 174.6 40.3 269 539-821 308-596 (615)
22 KOG0495 HAT repeat protein [RN 99.8 1.3E-13 2.8E-18 140.2 51.7 366 462-840 523-896 (913)
23 PRK15174 Vi polysaccharide exp 99.8 3.3E-16 7.2E-21 175.8 36.9 325 423-793 45-386 (656)
24 PRK15174 Vi polysaccharide exp 99.8 2.4E-16 5.2E-21 176.9 33.5 317 499-822 48-381 (656)
25 PRK14574 hmsH outer membrane p 99.8 8.6E-15 1.9E-19 164.2 43.8 188 634-821 301-512 (822)
26 PRK10049 pgaA outer membrane p 99.8 2.6E-15 5.6E-20 172.6 40.9 362 391-796 51-464 (765)
27 PRK11788 tetratricopeptide rep 99.8 1.1E-16 2.5E-21 171.7 27.2 292 397-728 43-354 (389)
28 KOG4422 Uncharacterized conser 99.7 3.4E-14 7.4E-19 137.1 36.4 448 109-623 116-593 (625)
29 KOG4318 Bicoid mRNA stability 99.7 2.8E-14 6E-19 150.1 36.8 160 560-726 463-631 (1088)
30 KOG4422 Uncharacterized conser 99.7 4.1E-14 8.8E-19 136.6 34.4 327 8-386 118-466 (625)
31 KOG0495 HAT repeat protein [RN 99.7 5.5E-12 1.2E-16 128.6 49.4 614 57-800 265-892 (913)
32 PRK14574 hmsH outer membrane p 99.7 4.5E-13 9.9E-18 150.5 46.0 438 292-795 40-520 (822)
33 KOG2076 RNA polymerase III tra 99.7 7.8E-13 1.7E-17 140.5 44.4 536 225-803 152-784 (895)
34 KOG2076 RNA polymerase III tra 99.7 2.9E-12 6.4E-17 136.1 48.2 347 53-419 149-513 (895)
35 KOG2003 TPR repeat-containing 99.7 4.9E-14 1.1E-18 136.7 29.6 475 220-808 209-709 (840)
36 PF13429 TPR_15: Tetratricopep 99.6 2.5E-15 5.4E-20 152.1 10.6 254 563-820 15-275 (280)
37 KOG0547 Translocase of outer m 99.6 2.9E-12 6.2E-17 126.4 29.6 212 604-820 339-564 (606)
38 KOG2003 TPR repeat-containing 99.5 1.2E-11 2.7E-16 120.3 26.6 462 183-742 203-709 (840)
39 KOG1126 DNA-binding cell divis 99.5 1.5E-12 3.3E-17 134.1 21.0 162 655-821 420-585 (638)
40 KOG1155 Anaphase-promoting com 99.5 1.6E-10 3.5E-15 113.6 31.6 312 396-718 171-493 (559)
41 KOG1126 DNA-binding cell divis 99.5 4E-12 8.6E-17 131.0 20.6 202 616-822 412-620 (638)
42 KOG2047 mRNA splicing factor [ 99.5 1.6E-08 3.5E-13 103.8 45.3 210 495-719 389-614 (835)
43 PRK10747 putative protoheme IX 99.5 2.8E-11 6E-16 128.2 27.4 252 504-789 129-391 (398)
44 PRK10747 putative protoheme IX 99.5 2.4E-11 5.2E-16 128.7 26.5 244 567-819 129-387 (398)
45 KOG1915 Cell cycle control pro 99.4 1.5E-08 3.3E-13 100.1 40.5 439 286-767 73-548 (677)
46 TIGR00540 hemY_coli hemY prote 99.4 8.7E-11 1.9E-15 125.2 27.8 215 601-819 163-396 (409)
47 COG2956 Predicted N-acetylgluc 99.4 3.1E-10 6.6E-15 106.5 26.5 261 433-737 48-325 (389)
48 KOG1155 Anaphase-promoting com 99.4 3.9E-10 8.5E-15 110.9 28.2 325 490-820 161-493 (559)
49 KOG1173 Anaphase-promoting com 99.4 2.3E-09 5.1E-14 108.5 33.6 269 462-769 251-532 (611)
50 KOG1173 Anaphase-promoting com 99.4 1.1E-09 2.4E-14 110.8 30.5 256 559-819 247-515 (611)
51 TIGR00540 hemY_coli hemY prote 99.4 6.2E-10 1.3E-14 118.8 30.7 259 501-788 126-399 (409)
52 KOG0547 Translocase of outer m 99.4 8.7E-10 1.9E-14 109.3 27.5 218 567-790 337-568 (606)
53 KOG1915 Cell cycle control pro 99.3 9.2E-08 2E-12 94.7 40.0 459 184-720 76-585 (677)
54 KOG0985 Vesicle coat protein c 99.3 2.8E-06 6.2E-11 92.0 54.3 439 319-805 840-1325(1666)
55 KOG0985 Vesicle coat protein c 99.3 2.9E-06 6.2E-11 92.0 56.5 614 151-819 486-1246(1666)
56 KOG1174 Anaphase-promoting com 99.3 1.6E-08 3.5E-13 98.2 33.2 137 655-795 367-507 (564)
57 KOG3616 Selective LIM binding 99.3 2.4E-06 5.2E-11 89.2 50.7 556 152-814 738-1383(1636)
58 KOG3616 Selective LIM binding 99.3 5.3E-08 1.1E-12 101.2 38.7 475 92-654 545-1024(1636)
59 PF13429 TPR_15: Tetratricopep 99.3 7.7E-12 1.7E-16 126.6 10.9 91 659-752 183-273 (280)
60 KOG3785 Uncharacterized conser 99.3 2E-08 4.4E-13 95.4 32.4 468 292-857 63-544 (557)
61 TIGR02521 type_IV_pilW type IV 99.3 2.8E-10 6.1E-15 112.7 20.4 196 625-821 31-231 (234)
62 KOG2047 mRNA splicing factor [ 99.3 7E-07 1.5E-11 92.1 44.2 423 79-590 103-583 (835)
63 COG3071 HemY Uncharacterized e 99.3 2.5E-09 5.4E-14 104.0 24.4 271 506-820 97-388 (400)
64 KOG4162 Predicted calmodulin-b 99.2 3E-07 6.6E-12 97.1 40.3 421 384-821 319-782 (799)
65 COG3071 HemY Uncharacterized e 99.2 1.3E-08 2.9E-13 99.0 27.8 123 330-455 97-222 (400)
66 COG2956 Predicted N-acetylgluc 99.2 5E-09 1.1E-13 98.6 21.9 306 505-842 47-367 (389)
67 COG3063 PilF Tfp pilus assembl 99.2 1.7E-09 3.6E-14 97.1 17.6 162 658-824 37-204 (250)
68 KOG1156 N-terminal acetyltrans 99.2 2.7E-06 5.9E-11 88.3 42.4 233 160-465 21-262 (700)
69 PF13041 PPR_2: PPR repeat fam 99.2 7.1E-11 1.5E-15 82.4 6.6 50 654-703 1-50 (50)
70 KOG2376 Signal recognition par 99.2 8.2E-07 1.8E-11 91.0 37.7 443 325-818 20-516 (652)
71 PRK12370 invasion protein regu 99.2 4.1E-09 9E-14 117.0 23.6 211 605-822 318-535 (553)
72 PF13041 PPR_2: PPR repeat fam 99.1 9.3E-11 2E-15 81.8 5.9 50 315-365 1-50 (50)
73 PRK12370 invasion protein regu 99.1 4.4E-09 9.6E-14 116.7 21.6 177 638-821 317-501 (553)
74 KOG1840 Kinesin light chain [C 99.1 1.5E-08 3.2E-13 106.5 23.4 192 629-820 245-477 (508)
75 KOG4162 Predicted calmodulin-b 99.1 8.1E-07 1.7E-11 94.0 35.7 306 474-794 463-789 (799)
76 PRK11189 lipoprotein NlpI; Pro 99.1 6.8E-09 1.5E-13 105.1 19.7 186 627-821 66-264 (296)
77 KOG3785 Uncharacterized conser 99.1 1.6E-07 3.4E-12 89.5 27.0 96 629-730 397-497 (557)
78 KOG1129 TPR repeat-containing 99.1 2.9E-09 6.3E-14 99.9 14.1 226 529-823 227-459 (478)
79 TIGR02521 type_IV_pilW type IV 99.1 2.4E-08 5.2E-13 98.8 21.3 194 559-790 34-234 (234)
80 KOG1174 Anaphase-promoting com 99.0 1.9E-06 4.2E-11 84.2 32.5 257 524-820 231-498 (564)
81 KOG1129 TPR repeat-containing 99.0 6.5E-09 1.4E-13 97.7 14.5 189 629-821 227-423 (478)
82 KOG2376 Signal recognition par 99.0 9.4E-07 2E-11 90.6 30.9 117 118-243 21-141 (652)
83 PRK11189 lipoprotein NlpI; Pro 99.0 6.3E-08 1.4E-12 98.0 21.8 197 600-803 73-281 (296)
84 PF12569 NARP1: NMDA receptor- 99.0 1.5E-06 3.2E-11 93.0 32.6 255 560-818 198-516 (517)
85 KOG1127 TPR repeat-containing 99.0 1.8E-05 3.9E-10 86.3 40.0 175 64-240 477-658 (1238)
86 KOG1127 TPR repeat-containing 99.0 3.6E-06 7.7E-11 91.5 33.9 552 182-819 493-1101(1238)
87 KOG0548 Molecular co-chaperone 99.0 2.8E-06 6.1E-11 86.4 30.9 85 734-818 365-451 (539)
88 KOG1840 Kinesin light chain [C 98.9 6.8E-08 1.5E-12 101.6 20.2 238 493-787 199-478 (508)
89 COG3063 PilF Tfp pilus assembl 98.9 1.9E-07 4E-12 84.3 18.9 191 601-794 45-242 (250)
90 KOG3617 WD40 and TPR repeat-co 98.9 2E-05 4.4E-10 83.8 36.5 482 285-822 756-1359(1416)
91 KOG1156 N-terminal acetyltrans 98.9 1.1E-05 2.4E-10 83.9 33.2 413 366-823 20-469 (700)
92 KOG3617 WD40 and TPR repeat-co 98.9 1.8E-05 3.9E-10 84.2 34.7 248 87-378 737-992 (1416)
93 KOG0548 Molecular co-chaperone 98.8 1.4E-06 3.1E-11 88.5 24.4 448 295-816 11-483 (539)
94 KOG1125 TPR repeat-containing 98.8 9.5E-08 2.1E-12 97.7 14.2 214 604-819 298-525 (579)
95 PF12569 NARP1: NMDA receptor- 98.8 4.3E-06 9.2E-11 89.5 26.4 293 395-721 10-335 (517)
96 KOG0624 dsRNA-activated protei 98.7 1.2E-05 2.5E-10 76.9 25.3 289 499-795 44-377 (504)
97 cd05804 StaR_like StaR_like; a 98.7 6.9E-06 1.5E-10 87.0 27.0 193 629-821 118-335 (355)
98 TIGR03302 OM_YfiO outer membra 98.7 9.6E-07 2.1E-11 87.0 18.8 59 764-822 171-232 (235)
99 PF04733 Coatomer_E: Coatomer 98.7 4.5E-07 9.7E-12 90.2 16.3 156 631-793 108-270 (290)
100 PRK15359 type III secretion sy 98.7 4.3E-07 9.3E-12 80.4 12.8 121 677-804 14-137 (144)
101 PRK10370 formate-dependent nit 98.6 1.6E-06 3.5E-11 81.3 17.0 145 663-822 23-173 (198)
102 KOG0624 dsRNA-activated protei 98.6 2.5E-05 5.5E-10 74.6 23.2 289 528-822 41-370 (504)
103 KOG4340 Uncharacterized conser 98.6 2.9E-05 6.3E-10 72.7 23.0 372 391-820 46-441 (459)
104 PRK15359 type III secretion sy 98.6 5.8E-07 1.2E-11 79.6 11.3 106 712-822 14-121 (144)
105 PF12854 PPR_1: PPR repeat 98.6 5E-08 1.1E-12 60.6 3.1 34 175-208 1-34 (34)
106 PRK15363 pathogenicity island 98.6 9.5E-07 2.1E-11 76.2 11.8 95 727-821 35-131 (157)
107 KOG1914 mRNA cleavage and poly 98.6 0.0012 2.6E-08 67.8 35.2 452 285-753 19-536 (656)
108 PLN02789 farnesyltranstransfer 98.6 8.6E-06 1.9E-10 82.2 20.5 196 607-806 53-268 (320)
109 cd05804 StaR_like StaR_like; a 98.6 5.5E-05 1.2E-09 80.1 27.8 190 599-789 122-337 (355)
110 PRK15179 Vi polysaccharide bio 98.5 5.2E-06 1.1E-10 92.5 19.7 126 690-818 85-213 (694)
111 KOG1125 TPR repeat-containing 98.5 7.6E-06 1.7E-10 84.1 18.2 214 502-719 294-526 (579)
112 PF04733 Coatomer_E: Coatomer 98.5 4.7E-06 1E-10 83.0 15.8 157 289-484 105-265 (290)
113 KOG4340 Uncharacterized conser 98.5 2.5E-05 5.5E-10 73.1 18.9 283 496-817 13-334 (459)
114 KOG1070 rRNA processing protei 98.5 1.3E-05 2.9E-10 90.4 20.0 208 614-825 1447-1666(1710)
115 PRK04841 transcriptional regul 98.4 0.00038 8.2E-09 84.1 34.5 25 560-584 495-519 (903)
116 COG4783 Putative Zn-dependent 98.4 4.7E-05 1E-09 77.2 21.3 144 657-822 307-454 (484)
117 PRK10370 formate-dependent nit 98.4 1.8E-05 3.9E-10 74.3 16.3 154 632-797 23-182 (198)
118 PF12854 PPR_1: PPR repeat 98.4 5.3E-07 1.2E-11 56.0 4.0 32 686-717 2-33 (34)
119 COG5010 TadD Flp pilus assembl 98.4 2.7E-05 5.7E-10 72.4 16.5 151 662-815 72-224 (257)
120 KOG1128 Uncharacterized conser 98.4 3.6E-05 7.7E-10 81.5 19.3 186 627-822 400-616 (777)
121 TIGR02552 LcrH_SycD type III s 98.3 5.1E-06 1.1E-10 73.5 10.6 99 723-821 12-113 (135)
122 COG4783 Putative Zn-dependent 98.3 5.8E-05 1.3E-09 76.5 18.8 121 697-820 312-435 (484)
123 KOG1128 Uncharacterized conser 98.3 2.9E-05 6.4E-10 82.1 17.2 234 490-737 395-633 (777)
124 KOG1070 rRNA processing protei 98.3 9.7E-05 2.1E-09 83.7 22.0 218 490-708 1455-1688(1710)
125 PLN02789 farnesyltranstransfer 98.3 5.5E-05 1.2E-09 76.4 18.6 184 633-820 45-248 (320)
126 COG5010 TadD Flp pilus assembl 98.3 3.8E-05 8.2E-10 71.4 15.3 134 688-823 63-198 (257)
127 TIGR03302 OM_YfiO outer membra 98.3 3.3E-05 7.1E-10 76.0 16.3 163 624-791 32-235 (235)
128 PRK14720 transcript cleavage f 98.2 0.00016 3.5E-09 81.5 22.2 147 627-804 118-268 (906)
129 KOG3081 Vesicle coat complex C 98.2 0.00074 1.6E-08 62.9 21.1 159 629-794 112-277 (299)
130 KOG2053 Mitochondrial inherita 98.1 0.024 5.1E-07 62.5 38.1 156 527-683 438-606 (932)
131 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 2.7E-05 5.9E-10 80.1 12.8 121 695-820 173-295 (395)
132 PRK15179 Vi polysaccharide bio 98.1 0.00013 2.9E-09 81.6 19.1 136 655-795 85-224 (694)
133 KOG1914 mRNA cleavage and poly 98.1 0.011 2.3E-07 61.1 30.2 159 657-818 367-535 (656)
134 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 6.2E-05 1.3E-09 77.5 14.6 129 624-756 168-297 (395)
135 KOG3060 Uncharacterized conser 98.1 0.00045 9.8E-09 63.8 17.6 161 634-797 61-229 (289)
136 TIGR02552 LcrH_SycD type III s 98.1 7.3E-05 1.6E-09 66.0 12.4 114 678-796 5-122 (135)
137 KOG0553 TPR repeat-containing 98.0 2.8E-05 6.2E-10 73.7 9.9 102 701-805 91-195 (304)
138 PRK14720 transcript cleavage f 98.0 0.00061 1.3E-08 77.0 21.7 170 382-585 24-198 (906)
139 PRK04841 transcriptional regul 98.0 0.004 8.7E-08 75.3 30.8 323 501-823 382-761 (903)
140 KOG2053 Mitochondrial inherita 98.0 0.043 9.3E-07 60.6 39.9 487 296-820 53-606 (932)
141 TIGR00756 PPR pentatricopeptid 98.0 1.4E-05 3E-10 50.8 4.5 34 658-691 2-35 (35)
142 PF09976 TPR_21: Tetratricopep 98.0 0.00016 3.5E-09 64.4 12.9 124 658-784 14-143 (145)
143 PF09976 TPR_21: Tetratricopep 97.9 0.00045 9.7E-09 61.6 15.5 122 695-818 16-143 (145)
144 TIGR00756 PPR pentatricopeptid 97.9 1.2E-05 2.6E-10 51.1 3.8 34 213-246 1-34 (35)
145 KOG0553 TPR repeat-containing 97.9 5.2E-05 1.1E-09 72.0 8.8 89 733-821 87-177 (304)
146 PF12895 Apc3: Anaphase-promot 97.9 1.2E-05 2.5E-10 63.8 3.6 78 740-818 2-83 (84)
147 PF13812 PPR_3: Pentatricopept 97.9 1.7E-05 3.7E-10 49.9 3.5 34 212-245 1-34 (34)
148 cd00189 TPR Tetratricopeptide 97.8 9.7E-05 2.1E-09 60.6 8.8 92 730-821 3-96 (100)
149 PF13812 PPR_3: Pentatricopept 97.8 3.2E-05 7E-10 48.6 4.3 33 657-689 2-34 (34)
150 PF13414 TPR_11: TPR repeat; P 97.8 3.3E-05 7.2E-10 58.5 5.1 63 758-820 2-65 (69)
151 KOG3060 Uncharacterized conser 97.8 0.00079 1.7E-08 62.2 14.5 181 637-821 24-219 (289)
152 PLN03088 SGT1, suppressor of 97.8 0.00022 4.8E-09 74.1 12.5 102 698-802 9-113 (356)
153 PF13432 TPR_16: Tetratricopep 97.8 3.8E-05 8.2E-10 57.3 4.9 58 765-822 3-60 (65)
154 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00018 3.9E-09 61.8 9.7 91 731-821 6-104 (119)
155 PRK15331 chaperone protein Sic 97.8 0.00022 4.8E-09 62.1 9.7 101 721-821 30-133 (165)
156 COG4235 Cytochrome c biogenesi 97.7 0.00024 5.2E-09 68.1 10.5 101 724-824 153-258 (287)
157 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00036 7.9E-09 59.9 10.9 103 694-796 5-113 (119)
158 COG3898 Uncharacterized membra 97.7 0.062 1.3E-06 53.4 26.1 238 567-817 131-387 (531)
159 PLN03088 SGT1, suppressor of 97.7 0.00038 8.3E-09 72.4 12.2 105 661-769 7-113 (356)
160 PRK02603 photosystem I assembl 97.7 0.00098 2.1E-08 61.5 13.4 130 655-808 34-166 (172)
161 PF13431 TPR_17: Tetratricopep 97.7 2.6E-05 5.6E-10 48.4 1.8 33 782-814 2-34 (34)
162 KOG0550 Molecular chaperone (D 97.6 0.00058 1.3E-08 67.6 11.6 264 531-820 55-349 (486)
163 PRK10153 DNA-binding transcrip 97.6 0.0017 3.7E-08 70.5 16.6 139 654-794 335-488 (517)
164 KOG1538 Uncharacterized conser 97.6 0.0075 1.6E-07 63.3 19.7 210 293-587 639-848 (1081)
165 PRK02603 photosystem I assembl 97.6 0.00041 8.9E-09 64.0 9.4 80 729-808 37-121 (172)
166 PF01535 PPR: PPR repeat; Int 97.6 8.5E-05 1.8E-09 45.4 3.2 31 213-243 1-31 (31)
167 COG4700 Uncharacterized protei 97.5 0.002 4.3E-08 56.5 12.2 124 688-814 86-214 (251)
168 KOG3081 Vesicle coat complex C 97.5 0.0078 1.7E-07 56.4 16.7 148 663-820 115-269 (299)
169 PF04840 Vps16_C: Vps16, C-ter 97.5 0.1 2.2E-06 52.8 26.4 80 499-581 183-262 (319)
170 COG3898 Uncharacterized membra 97.5 0.12 2.6E-06 51.4 27.0 244 504-754 131-390 (531)
171 PF01535 PPR: PPR repeat; Int 97.5 0.00011 2.4E-09 44.9 3.3 31 657-687 1-31 (31)
172 CHL00033 ycf3 photosystem I as 97.5 0.0041 8.8E-08 57.2 14.9 110 656-793 35-154 (168)
173 KOG1538 Uncharacterized conser 97.5 0.016 3.5E-07 60.9 19.9 79 667-759 727-806 (1081)
174 PF13371 TPR_9: Tetratricopept 97.5 0.00032 7E-09 53.8 6.0 57 766-822 2-58 (73)
175 PF13432 TPR_16: Tetratricopep 97.5 0.00025 5.3E-09 52.8 5.1 61 733-793 3-65 (65)
176 CHL00033 ycf3 photosystem I as 97.4 0.00062 1.3E-08 62.6 8.4 91 727-817 35-137 (168)
177 cd00189 TPR Tetratricopeptide 97.4 0.0014 3E-08 53.5 9.6 62 729-790 36-99 (100)
178 PF12895 Apc3: Anaphase-promot 97.4 0.00049 1.1E-08 54.4 6.2 80 669-752 2-83 (84)
179 PF14938 SNAP: Soluble NSF att 97.4 0.021 4.6E-07 57.5 19.4 124 631-754 120-264 (282)
180 PF14559 TPR_19: Tetratricopep 97.4 0.00014 3.1E-09 54.8 2.9 51 771-821 3-53 (68)
181 PF14559 TPR_19: Tetratricopep 97.3 0.00019 4.2E-09 54.0 3.5 48 703-753 3-51 (68)
182 PF14938 SNAP: Soluble NSF att 97.3 0.021 4.6E-07 57.5 18.7 121 660-795 98-232 (282)
183 PRK10153 DNA-binding transcrip 97.3 0.0049 1.1E-07 67.1 14.8 132 686-821 332-481 (517)
184 PF13414 TPR_11: TPR repeat; P 97.3 0.00049 1.1E-08 52.0 4.9 64 727-790 3-69 (69)
185 PF04840 Vps16_C: Vps16, C-ter 97.2 0.32 6.9E-06 49.4 26.7 107 393-518 181-287 (319)
186 PF13281 DUF4071: Domain of un 97.2 0.043 9.2E-07 55.9 18.9 166 625-793 141-339 (374)
187 PF05843 Suf: Suppressor of fo 97.1 0.011 2.3E-07 59.4 13.9 136 657-795 2-143 (280)
188 KOG1130 Predicted G-alpha GTPa 97.1 0.0014 3.1E-08 64.7 7.1 125 692-816 196-338 (639)
189 PF13428 TPR_14: Tetratricopep 97.1 0.0007 1.5E-08 45.3 3.6 42 760-801 2-43 (44)
190 PRK15363 pathogenicity island 97.1 0.011 2.4E-07 51.5 11.6 89 630-719 40-131 (157)
191 PRK10866 outer membrane biogen 97.0 0.049 1.1E-06 53.1 17.5 56 765-820 181-239 (243)
192 KOG0550 Molecular chaperone (D 97.0 0.068 1.5E-06 53.6 18.1 54 762-815 375-436 (486)
193 PF12688 TPR_5: Tetratrico pep 97.0 0.014 3.1E-07 49.0 11.8 93 661-753 6-101 (120)
194 PRK10803 tol-pal system protei 97.0 0.0038 8.1E-08 61.2 9.4 84 738-821 154-245 (263)
195 KOG2796 Uncharacterized conser 96.9 0.066 1.4E-06 50.1 16.0 167 629-795 140-322 (366)
196 PF13371 TPR_9: Tetratricopept 96.9 0.0019 4.2E-08 49.4 5.5 66 735-800 3-70 (73)
197 COG4700 Uncharacterized protei 96.9 0.11 2.4E-06 46.0 16.1 100 722-821 84-188 (251)
198 PLN03098 LPA1 LOW PSII ACCUMUL 96.9 0.0034 7.4E-08 64.4 8.0 64 758-821 74-140 (453)
199 PF12688 TPR_5: Tetratrico pep 96.9 0.0094 2E-07 50.1 9.2 83 733-815 7-97 (120)
200 KOG2041 WD40 repeat protein [G 96.8 0.72 1.6E-05 49.7 24.2 166 396-584 767-951 (1189)
201 PF08579 RPM2: Mitochondrial r 96.8 0.0075 1.6E-07 48.5 7.6 78 114-193 30-116 (120)
202 KOG0543 FKBP-type peptidyl-pro 96.8 0.013 2.7E-07 58.9 10.9 95 727-821 257-354 (397)
203 KOG0543 FKBP-type peptidyl-pro 96.8 0.0087 1.9E-07 60.0 9.6 127 698-869 215-341 (397)
204 PRK10803 tol-pal system protei 96.8 0.018 3.9E-07 56.5 11.8 93 702-794 154-252 (263)
205 PF05843 Suf: Suppressor of fo 96.7 0.0089 1.9E-07 59.9 10.0 124 595-719 5-135 (280)
206 PF08579 RPM2: Mitochondrial r 96.7 0.021 4.6E-07 46.0 9.5 80 659-739 28-116 (120)
207 KOG2796 Uncharacterized conser 96.6 0.15 3.3E-06 47.8 16.0 161 561-728 182-359 (366)
208 PF10037 MRP-S27: Mitochondria 96.6 0.015 3.3E-07 60.5 10.6 119 142-260 62-186 (429)
209 PF06239 ECSIT: Evolutionarily 96.5 0.011 2.4E-07 54.0 7.9 106 39-161 43-153 (228)
210 PF10037 MRP-S27: Mitochondria 96.5 0.042 9.1E-07 57.3 13.1 119 586-704 61-186 (429)
211 KOG1130 Predicted G-alpha GTPa 96.4 0.02 4.4E-07 56.9 9.5 128 592-719 196-343 (639)
212 KOG2041 WD40 repeat protein [G 96.4 1.1 2.4E-05 48.3 22.5 125 402-548 747-875 (1189)
213 PF06239 ECSIT: Evolutionarily 96.4 0.033 7.1E-07 51.1 9.9 97 645-742 34-153 (228)
214 PRK10866 outer membrane biogen 96.3 0.29 6.4E-06 47.7 17.1 54 186-239 180-239 (243)
215 COG4235 Cytochrome c biogenesi 96.3 0.13 2.8E-06 50.0 13.8 100 618-719 149-255 (287)
216 PF03704 BTAD: Bacterial trans 96.2 0.054 1.2E-06 48.3 10.5 106 701-820 16-123 (146)
217 PRK11906 transcriptional regul 96.2 0.22 4.7E-06 51.8 15.7 143 672-817 274-431 (458)
218 PF07079 DUF1347: Protein of u 96.1 2.1 4.5E-05 44.1 32.5 189 627-819 300-521 (549)
219 COG3118 Thioredoxin domain-con 96.1 0.17 3.8E-06 48.8 13.6 153 699-861 142-301 (304)
220 PF13525 YfiO: Outer membrane 96.1 0.15 3.4E-06 48.3 13.6 50 765-814 147-199 (203)
221 KOG2280 Vacuolar assembly/sort 96.1 3.1 6.7E-05 45.8 29.6 103 633-751 692-794 (829)
222 PRK11906 transcriptional regul 96.0 0.065 1.4E-06 55.5 10.9 113 706-818 273-397 (458)
223 PF04184 ST7: ST7 protein; In 96.0 0.48 1E-05 49.3 16.9 101 695-795 263-382 (539)
224 PF13525 YfiO: Outer membrane 95.9 0.52 1.1E-05 44.7 16.4 144 657-821 6-169 (203)
225 PF07079 DUF1347: Protein of u 95.9 2.7 5.8E-05 43.4 36.4 200 559-765 301-531 (549)
226 PF13424 TPR_12: Tetratricopep 95.8 0.011 2.3E-07 45.9 3.8 59 761-819 7-72 (78)
227 KOG4555 TPR repeat-containing 95.8 0.056 1.2E-06 44.5 7.8 88 736-823 52-145 (175)
228 COG5107 RNA14 Pre-mRNA 3'-end 95.8 2.7 5.8E-05 43.2 31.0 126 592-719 398-530 (660)
229 COG0457 NrfG FOG: TPR repeat [ 95.7 2.2 4.8E-05 41.6 24.2 193 625-821 59-264 (291)
230 PF13512 TPR_18: Tetratricopep 95.7 0.16 3.6E-06 43.5 10.5 76 733-808 16-99 (142)
231 PF13424 TPR_12: Tetratricopep 95.6 0.036 7.9E-07 42.9 6.2 26 694-719 8-33 (78)
232 PF09205 DUF1955: Domain of un 95.5 0.5 1.1E-05 39.4 12.1 141 666-825 12-152 (161)
233 PF07719 TPR_2: Tetratricopept 95.5 0.033 7.1E-07 34.6 4.3 33 760-792 2-34 (34)
234 PF00515 TPR_1: Tetratricopept 95.5 0.024 5.1E-07 35.3 3.6 33 760-792 2-34 (34)
235 KOG1920 IkappaB kinase complex 95.2 1.9 4.1E-05 50.0 19.5 157 539-753 894-1052(1265)
236 PF12921 ATP13: Mitochondrial 95.1 0.27 5.8E-06 41.9 10.0 48 687-734 48-95 (126)
237 PF03704 BTAD: Bacterial trans 95.1 0.22 4.9E-06 44.3 10.3 72 658-730 64-139 (146)
238 KOG2280 Vacuolar assembly/sort 95.0 7.1 0.00015 43.2 32.8 352 430-816 399-793 (829)
239 PF13512 TPR_18: Tetratricopep 95.0 0.61 1.3E-05 40.2 11.7 117 660-793 14-133 (142)
240 COG0457 NrfG FOG: TPR repeat [ 95.0 3.9 8.4E-05 39.8 23.3 174 624-806 94-279 (291)
241 KOG4279 Serine/threonine prote 94.8 1.3 2.9E-05 48.2 16.1 101 666-793 297-400 (1226)
242 COG4105 ComL DNA uptake lipopr 94.8 4 8.8E-05 39.0 20.3 162 659-821 37-232 (254)
243 PLN03098 LPA1 LOW PSII ACCUMUL 94.7 0.13 2.9E-06 53.2 8.4 60 729-788 77-141 (453)
244 COG1729 Uncharacterized protei 94.7 0.15 3.4E-06 48.8 8.2 99 694-793 145-249 (262)
245 KOG1920 IkappaB kinase complex 94.6 7.3 0.00016 45.6 21.9 118 630-758 913-1030(1265)
246 PF10300 DUF3808: Protein of u 94.6 1 2.2E-05 49.0 15.4 128 659-788 232-376 (468)
247 PF14432 DYW_deaminase: DYW fa 94.6 0.024 5.2E-07 47.4 2.4 24 829-856 2-25 (116)
248 KOG4234 TPR repeat-containing 94.5 0.35 7.6E-06 43.5 9.3 121 701-823 105-234 (271)
249 KOG1941 Acetylcholine receptor 94.5 1.5 3.2E-05 43.6 14.3 157 658-814 164-352 (518)
250 KOG4555 TPR repeat-containing 94.3 0.18 4E-06 41.7 6.7 89 701-792 53-148 (175)
251 KOG2610 Uncharacterized conser 94.3 0.98 2.1E-05 44.3 12.6 146 669-817 116-271 (491)
252 PF12921 ATP13: Mitochondrial 94.3 0.44 9.4E-06 40.6 9.4 51 721-771 46-100 (126)
253 smart00299 CLH Clathrin heavy 94.3 1.4 3.1E-05 38.7 13.3 63 694-769 72-135 (140)
254 COG1729 Uncharacterized protei 94.2 0.35 7.6E-06 46.4 9.5 94 659-754 145-242 (262)
255 PF02259 FAT: FAT domain; Int 94.2 7.7 0.00017 40.7 21.1 151 654-806 144-305 (352)
256 PRK15331 chaperone protein Sic 94.2 1.3 2.7E-05 39.3 12.0 91 663-757 44-135 (165)
257 COG5107 RNA14 Pre-mRNA 3'-end 94.2 8 0.00017 39.9 33.8 78 285-365 41-121 (660)
258 PF04053 Coatomer_WDAD: Coatom 93.7 0.97 2.1E-05 48.3 12.6 131 666-822 271-402 (443)
259 smart00299 CLH Clathrin heavy 93.5 3.7 7.9E-05 36.1 14.4 126 658-803 9-135 (140)
260 PRK11619 lytic murein transgly 93.5 17 0.00037 41.3 29.7 116 669-787 254-374 (644)
261 KOG4648 Uncharacterized conser 93.5 0.15 3.2E-06 49.7 5.5 93 700-795 106-201 (536)
262 COG4785 NlpI Lipoprotein NlpI, 93.4 2.6 5.7E-05 38.7 12.8 159 656-821 99-265 (297)
263 COG4105 ComL DNA uptake lipopr 93.3 8 0.00017 37.1 17.5 157 636-793 45-238 (254)
264 PF13281 DUF4071: Domain of un 93.3 4.8 0.00011 41.5 16.2 70 530-599 146-225 (374)
265 KOG3941 Intermediate in Toll s 93.3 0.75 1.6E-05 43.9 9.6 109 645-754 54-186 (406)
266 KOG4234 TPR repeat-containing 93.2 0.48 1E-05 42.7 7.8 90 734-823 102-198 (271)
267 PF10300 DUF3808: Protein of u 93.1 3.4 7.4E-05 45.0 16.0 113 606-719 248-375 (468)
268 PF13181 TPR_8: Tetratricopept 92.8 0.2 4.4E-06 30.9 3.8 31 761-791 3-33 (34)
269 KOG1464 COP9 signalosome, subu 92.5 10 0.00022 36.2 18.5 207 561-772 70-317 (440)
270 PF09613 HrpB1_HrpK: Bacterial 92.3 4 8.6E-05 36.1 12.1 87 701-790 20-108 (160)
271 KOG1941 Acetylcholine receptor 92.2 1.4 3.1E-05 43.7 10.2 223 566-788 16-275 (518)
272 COG1747 Uncharacterized N-term 92.1 14 0.0003 39.1 17.4 157 524-719 65-233 (711)
273 PF08631 SPO22: Meiosis protei 92.1 14 0.00031 37.1 21.8 20 767-786 254-273 (278)
274 PF13176 TPR_7: Tetratricopept 92.0 0.27 5.8E-06 30.9 3.5 25 762-786 2-26 (36)
275 KOG1258 mRNA processing protei 91.6 23 0.0005 38.4 33.6 345 285-645 44-420 (577)
276 PF00637 Clathrin: Region in C 91.6 0.23 4.9E-06 44.1 4.1 86 151-239 12-97 (143)
277 COG2976 Uncharacterized protei 91.6 6 0.00013 36.0 12.6 129 659-793 57-193 (207)
278 KOG1258 mRNA processing protei 91.5 23 0.00051 38.4 29.0 181 624-808 296-490 (577)
279 KOG1585 Protein required for f 91.5 12 0.00025 35.5 14.6 51 496-547 193-249 (308)
280 KOG2114 Vacuolar assembly/sort 91.3 30 0.00064 39.2 27.6 29 285-313 430-458 (933)
281 PF13176 TPR_7: Tetratricopept 91.3 0.24 5.3E-06 31.1 2.8 24 796-819 2-25 (36)
282 PRK09687 putative lyase; Provi 91.3 17 0.00038 36.3 24.1 236 76-363 35-277 (280)
283 KOG2114 Vacuolar assembly/sort 91.1 32 0.00068 39.0 28.3 116 291-416 339-458 (933)
284 COG4649 Uncharacterized protei 91.0 11 0.00024 33.6 15.7 122 666-787 68-195 (221)
285 PF04053 Coatomer_WDAD: Coatom 90.8 5.2 0.00011 42.9 13.8 161 326-521 270-430 (443)
286 COG4649 Uncharacterized protei 90.8 7.7 0.00017 34.5 12.0 122 567-721 69-197 (221)
287 KOG2066 Vacuolar assembly/sort 90.3 21 0.00046 39.9 17.6 33 624-656 504-536 (846)
288 KOG1550 Extracellular protein 90.3 35 0.00076 38.3 20.5 272 509-821 228-537 (552)
289 PF07035 Mic1: Colon cancer-as 90.3 13 0.00027 33.5 13.5 58 528-585 92-149 (167)
290 PRK09687 putative lyase; Provi 90.1 22 0.00048 35.6 24.9 79 285-366 36-118 (280)
291 PF14853 Fis1_TPR_C: Fis1 C-te 89.9 1.3 2.9E-05 30.7 5.6 34 764-797 6-39 (53)
292 COG3947 Response regulator con 89.4 19 0.0004 35.2 14.4 54 767-820 287-340 (361)
293 KOG2610 Uncharacterized conser 89.2 3.3 7.1E-05 40.8 9.6 115 702-818 114-234 (491)
294 KOG1586 Protein required for f 89.1 20 0.00044 33.8 14.9 91 705-795 128-231 (288)
295 PF09613 HrpB1_HrpK: Bacterial 88.9 2.2 4.8E-05 37.6 7.6 51 771-821 22-72 (160)
296 COG3118 Thioredoxin domain-con 88.8 25 0.00055 34.6 17.0 51 603-653 146-196 (304)
297 KOG1586 Protein required for f 88.8 20 0.00043 33.8 13.7 95 701-795 83-190 (288)
298 KOG2066 Vacuolar assembly/sort 88.8 46 0.001 37.5 24.7 49 391-439 394-442 (846)
299 KOG1585 Protein required for f 88.6 23 0.00049 33.7 16.7 26 526-551 32-57 (308)
300 KOG1464 COP9 signalosome, subu 88.5 24 0.00052 33.9 14.5 231 299-535 40-314 (440)
301 PF00637 Clathrin: Region in C 88.5 0.23 5E-06 44.0 1.5 128 49-196 13-140 (143)
302 PF04184 ST7: ST7 protein; In 88.5 6.1 0.00013 41.6 11.5 141 668-820 180-322 (539)
303 TIGR02561 HrpB1_HrpK type III 88.1 2.3 5E-05 36.7 7.0 52 772-823 23-74 (153)
304 KOG3941 Intermediate in Toll s 88.0 3.5 7.6E-05 39.6 8.7 97 408-507 53-172 (406)
305 PF13428 TPR_14: Tetratricopep 87.5 1.8 3.8E-05 28.7 5.0 27 658-684 3-29 (44)
306 PF11207 DUF2989: Protein of u 87.3 2.5 5.4E-05 38.9 7.2 75 738-813 118-198 (203)
307 PF10345 Cohesin_load: Cohesin 87.1 62 0.0013 37.0 28.2 164 7-172 60-251 (608)
308 PF00515 TPR_1: Tetratricopept 86.7 1.5 3.3E-05 26.8 4.1 27 658-684 3-29 (34)
309 PF07719 TPR_2: Tetratricopept 86.6 0.72 1.6E-05 28.3 2.5 28 794-821 2-29 (34)
310 KOG4648 Uncharacterized conser 86.6 1.1 2.4E-05 43.9 4.8 81 734-814 104-186 (536)
311 COG4455 ImpE Protein of avirul 86.5 15 0.00033 34.1 11.5 145 659-814 4-162 (273)
312 PF10602 RPN7: 26S proteasome 86.4 8.5 0.00019 35.3 10.4 60 659-718 39-100 (177)
313 PF07721 TPR_4: Tetratricopept 86.3 0.93 2E-05 25.9 2.6 24 794-817 2-25 (26)
314 KOG3364 Membrane protein invol 86.3 7.3 0.00016 33.0 8.6 71 724-794 29-106 (149)
315 PF02259 FAT: FAT domain; Int 86.2 23 0.0005 37.1 15.4 64 758-821 145-212 (352)
316 COG3629 DnrI DNA-binding trans 86.1 7.2 0.00016 38.4 10.1 77 658-735 155-235 (280)
317 PF10602 RPN7: 26S proteasome 86.0 9.9 0.00022 34.9 10.6 60 625-684 36-101 (177)
318 PRK10941 hypothetical protein; 86.0 4.2 9.2E-05 40.1 8.6 82 762-866 184-265 (269)
319 PF07035 Mic1: Colon cancer-as 85.9 26 0.00056 31.6 13.5 35 171-205 19-53 (167)
320 COG1747 Uncharacterized N-term 85.6 53 0.0011 35.0 16.1 159 628-793 69-239 (711)
321 smart00028 TPR Tetratricopepti 84.9 1.7 3.8E-05 25.6 3.8 30 762-791 4-33 (34)
322 COG3629 DnrI DNA-binding trans 84.9 3.4 7.4E-05 40.6 7.3 61 728-788 154-216 (280)
323 KOG4642 Chaperone-dependent E3 84.8 1.9 4.1E-05 40.3 5.2 86 700-788 19-107 (284)
324 PF09205 DUF1955: Domain of un 84.8 23 0.0005 30.0 13.5 63 659-723 89-151 (161)
325 KOG4570 Uncharacterized conser 84.4 7.8 0.00017 38.0 9.2 92 624-719 63-163 (418)
326 PF13174 TPR_6: Tetratricopept 84.1 1.8 3.9E-05 26.2 3.5 26 796-821 3-28 (33)
327 TIGR02561 HrpB1_HrpK type III 83.7 21 0.00046 31.1 10.6 64 704-770 23-88 (153)
328 PF08631 SPO22: Meiosis protei 83.6 51 0.0011 33.1 24.9 18 665-682 255-272 (278)
329 COG2909 MalT ATP-dependent tra 83.5 92 0.002 35.9 25.0 199 624-823 414-648 (894)
330 PF14853 Fis1_TPR_C: Fis1 C-te 83.2 6.6 0.00014 27.3 6.1 50 796-871 4-53 (53)
331 PF13431 TPR_17: Tetratricopep 83.1 1.7 3.7E-05 26.8 3.0 28 617-644 5-32 (34)
332 PRK12798 chemotaxis protein; R 83.0 64 0.0014 33.7 22.5 165 638-805 125-302 (421)
333 KOG1550 Extracellular protein 82.9 59 0.0013 36.5 17.0 81 742-824 343-428 (552)
334 PF13174 TPR_6: Tetratricopept 82.6 1.4 2.9E-05 26.8 2.5 26 762-787 3-28 (33)
335 KOG0376 Serine-threonine phosp 82.4 2.2 4.8E-05 44.5 5.1 83 737-819 14-98 (476)
336 KOG4507 Uncharacterized conser 81.2 4.7 0.0001 43.0 6.9 125 674-802 591-719 (886)
337 PF13181 TPR_8: Tetratricopept 81.1 2.3 4.9E-05 26.0 3.1 28 794-821 2-29 (34)
338 PRK11619 lytic murein transgly 80.2 1.2E+02 0.0025 34.9 40.5 396 391-826 101-509 (644)
339 KOG0276 Vesicle coat complex C 80.1 11 0.00024 40.6 9.2 148 638-818 599-746 (794)
340 PF13170 DUF4003: Protein of u 79.4 55 0.0012 33.1 13.7 51 333-384 78-134 (297)
341 PF04190 DUF410: Protein of un 79.3 69 0.0015 31.7 16.5 82 624-720 89-170 (260)
342 PF06552 TOM20_plant: Plant sp 79.0 26 0.00056 31.8 9.8 61 672-737 51-123 (186)
343 cd00923 Cyt_c_Oxidase_Va Cytoc 78.9 15 0.00032 29.1 7.2 61 672-734 23-83 (103)
344 COG0790 FOG: TPR repeat, SEL1 78.6 79 0.0017 32.0 15.9 130 671-807 92-236 (292)
345 cd00923 Cyt_c_Oxidase_Va Cytoc 78.2 13 0.00028 29.4 6.7 46 438-483 25-70 (103)
346 PF14561 TPR_20: Tetratricopep 77.7 4.7 0.0001 31.9 4.6 41 779-819 8-48 (90)
347 KOG2063 Vacuolar assembly/sort 77.4 1.3E+02 0.0027 35.4 17.1 178 559-753 507-710 (877)
348 PRK15180 Vi polysaccharide bio 77.1 14 0.00031 38.5 8.7 111 678-792 312-424 (831)
349 PF13374 TPR_10: Tetratricopep 76.8 5.9 0.00013 25.5 4.3 27 658-684 4-30 (42)
350 KOG1308 Hsp70-interacting prot 76.8 1.6 3.4E-05 43.3 2.0 86 740-825 127-214 (377)
351 PF02284 COX5A: Cytochrome c o 76.7 15 0.00033 29.4 6.9 60 674-735 28-87 (108)
352 KOG4642 Chaperone-dependent E3 76.1 29 0.00064 32.9 9.7 81 635-717 20-104 (284)
353 COG2976 Uncharacterized protei 75.5 67 0.0015 29.6 14.9 53 633-685 134-188 (207)
354 COG5159 RPN6 26S proteasome re 75.3 86 0.0019 30.7 18.9 33 426-458 9-41 (421)
355 PF02284 COX5A: Cytochrome c o 75.1 14 0.0003 29.7 6.2 47 438-484 28-74 (108)
356 PF06552 TOM20_plant: Plant sp 74.7 7.2 0.00016 35.1 5.3 124 672-824 7-138 (186)
357 PF10579 Rapsyn_N: Rapsyn N-te 74.3 5.5 0.00012 30.1 3.8 47 703-749 18-65 (80)
358 KOG2471 TPR repeat-containing 74.1 1.3E+02 0.0028 32.1 14.5 103 633-738 248-380 (696)
359 TIGR02508 type_III_yscG type I 74.0 44 0.00096 26.8 9.3 60 633-695 47-106 (115)
360 PF04097 Nic96: Nup93/Nic96; 73.9 1.7E+02 0.0037 33.4 26.2 49 316-366 110-158 (613)
361 KOG4570 Uncharacterized conser 73.8 8.4 0.00018 37.8 5.9 99 72-176 58-165 (418)
362 COG5159 RPN6 26S proteasome re 73.6 95 0.0021 30.4 13.6 53 663-715 10-69 (421)
363 KOG0551 Hsp90 co-chaperone CNS 73.5 11 0.00025 37.4 6.7 89 729-817 83-177 (390)
364 KOG0403 Neoplastic transformat 73.4 1.2E+02 0.0027 31.7 28.1 74 497-570 513-588 (645)
365 COG4785 NlpI Lipoprotein NlpI, 73.1 83 0.0018 29.5 17.2 79 369-449 81-162 (297)
366 PF07163 Pex26: Pex26 protein; 72.5 38 0.00082 33.1 9.7 88 663-753 90-184 (309)
367 PF13374 TPR_10: Tetratricopep 71.8 7.5 0.00016 25.0 3.8 24 796-819 5-28 (42)
368 KOG0890 Protein kinase of the 71.7 3.3E+02 0.0071 35.8 25.1 60 728-788 1671-1731(2382)
369 KOG2396 HAT (Half-A-TPR) repea 69.8 1.6E+02 0.0035 31.6 30.7 413 316-753 104-556 (568)
370 PF13170 DUF4003: Protein of u 69.8 1.3E+02 0.0028 30.4 18.1 65 436-500 78-148 (297)
371 PF09986 DUF2225: Uncharacteri 69.5 23 0.00051 33.7 7.9 63 760-822 119-194 (214)
372 KOG0890 Protein kinase of the 69.2 3.7E+02 0.008 35.4 31.1 307 498-821 1388-1730(2382)
373 TIGR02508 type_III_yscG type I 68.5 60 0.0013 26.0 9.1 64 85-153 46-109 (115)
374 KOG0276 Vesicle coat complex C 68.3 28 0.0006 37.8 8.6 99 297-414 648-746 (794)
375 KOG3364 Membrane protein invol 68.3 54 0.0012 28.1 8.6 63 689-753 30-97 (149)
376 PRK15180 Vi polysaccharide bio 67.9 78 0.0017 33.4 11.4 142 701-846 299-442 (831)
377 PRK13800 putative oxidoreducta 67.6 2.9E+02 0.0062 33.5 22.6 21 522-542 632-652 (897)
378 KOG3824 Huntingtin interacting 67.4 20 0.00043 35.1 6.8 49 769-817 126-174 (472)
379 PF07720 TPR_3: Tetratricopept 67.1 16 0.00035 22.9 4.2 30 762-791 4-35 (36)
380 KOG0545 Aryl-hydrocarbon recep 67.0 64 0.0014 30.8 9.7 52 767-818 238-289 (329)
381 KOG1498 26S proteasome regulat 66.8 1.6E+02 0.0035 30.4 13.2 114 731-844 135-263 (439)
382 KOG3807 Predicted membrane pro 66.6 47 0.001 33.0 9.2 21 777-797 380-400 (556)
383 PF11207 DUF2989: Protein of u 66.5 38 0.00082 31.4 8.1 75 672-747 122-198 (203)
384 TIGR03504 FimV_Cterm FimV C-te 66.3 11 0.00023 25.0 3.5 26 797-822 3-28 (44)
385 KOG2300 Uncharacterized conser 66.1 1.9E+02 0.0041 30.9 33.2 186 641-829 298-520 (629)
386 PF09670 Cas_Cas02710: CRISPR- 65.6 80 0.0017 33.4 11.7 53 666-719 141-197 (379)
387 smart00386 HAT HAT (Half-A-TPR 65.6 8.3 0.00018 23.0 2.9 29 773-801 1-29 (33)
388 KOG0686 COP9 signalosome, subu 65.5 1.5E+02 0.0032 30.9 12.6 61 625-685 150-216 (466)
389 PHA02875 ankyrin repeat protei 64.3 1.8E+02 0.0039 31.3 14.8 196 130-377 15-223 (413)
390 PF13929 mRNA_stabil: mRNA sta 63.8 1.6E+02 0.0035 29.3 14.3 121 112-236 134-262 (292)
391 smart00028 TPR Tetratricopepti 63.4 10 0.00023 21.9 3.1 28 794-821 2-29 (34)
392 KOG0545 Aryl-hydrocarbon recep 63.3 53 0.0011 31.3 8.5 65 729-793 232-298 (329)
393 PF13762 MNE1: Mitochondrial s 63.0 73 0.0016 27.9 8.8 77 81-159 42-128 (145)
394 PF04097 Nic96: Nup93/Nic96; 62.1 2.9E+02 0.0063 31.6 19.9 228 498-741 116-377 (613)
395 COG4976 Predicted methyltransf 60.3 13 0.00027 34.9 4.0 56 737-792 5-62 (287)
396 PF04090 RNA_pol_I_TF: RNA pol 59.7 24 0.00052 32.7 5.7 91 761-851 43-134 (199)
397 TIGR03504 FimV_Cterm FimV C-te 59.7 21 0.00045 23.7 3.9 24 662-685 5-28 (44)
398 PF15469 Sec5: Exocyst complex 59.3 1.3E+02 0.0027 27.9 10.7 85 697-797 92-177 (182)
399 PF12862 Apc5: Anaphase-promot 59.2 27 0.00058 28.0 5.4 51 770-820 9-68 (94)
400 PF06957 COPI_C: Coatomer (COP 58.4 30 0.00065 36.5 6.9 108 667-792 215-333 (422)
401 COG2909 MalT ATP-dependent tra 58.3 3.6E+02 0.0078 31.5 26.7 82 504-585 426-526 (894)
402 KOG2063 Vacuolar assembly/sort 57.6 2E+02 0.0044 33.8 13.6 201 8-240 506-712 (877)
403 COG4455 ImpE Protein of avirul 56.9 37 0.0008 31.8 6.2 65 730-794 4-70 (273)
404 PF04190 DUF410: Protein of un 55.3 2.2E+02 0.0048 28.2 15.0 80 390-484 91-170 (260)
405 KOG2297 Predicted translation 55.3 2.3E+02 0.0049 28.3 12.9 19 557-575 322-340 (412)
406 PRK10941 hypothetical protein; 55.2 61 0.0013 32.2 8.1 64 733-796 187-252 (269)
407 COG4941 Predicted RNA polymera 54.8 2E+02 0.0044 29.1 11.2 130 654-796 262-402 (415)
408 PF10345 Cohesin_load: Cohesin 54.0 3.9E+02 0.0084 30.6 37.6 195 316-520 29-252 (608)
409 PRK13800 putative oxidoreducta 53.5 4.9E+02 0.011 31.6 21.4 213 305-540 623-836 (897)
410 KOG0292 Vesicle coat complex C 52.1 19 0.00041 40.8 4.4 118 669-818 606-723 (1202)
411 PF04910 Tcf25: Transcriptiona 51.1 3.2E+02 0.0069 28.7 13.2 31 490-520 37-67 (360)
412 cd08819 CARD_MDA5_2 Caspase ac 50.4 81 0.0018 24.7 6.2 35 538-573 49-83 (88)
413 PF09477 Type_III_YscG: Bacter 48.8 1.5E+02 0.0032 24.3 8.5 50 634-685 49-98 (116)
414 PF10366 Vps39_1: Vacuolar sor 47.9 67 0.0014 26.6 6.1 26 559-584 42-67 (108)
415 COG2912 Uncharacterized conser 47.6 1.2E+02 0.0026 29.8 8.5 59 763-821 185-243 (269)
416 KOG4077 Cytochrome c oxidase, 47.3 1.3E+02 0.0028 25.5 7.3 59 674-734 67-125 (149)
417 KOG1498 26S proteasome regulat 47.3 3.5E+02 0.0077 28.2 16.4 103 625-753 131-238 (439)
418 PF11846 DUF3366: Domain of un 47.2 59 0.0013 30.4 6.6 35 756-790 141-175 (193)
419 KOG4077 Cytochrome c oxidase, 46.8 96 0.0021 26.2 6.5 46 439-484 68-113 (149)
420 PF13934 ELYS: Nuclear pore co 46.3 2.8E+02 0.0061 26.7 12.9 19 697-715 114-132 (226)
421 PF08311 Mad3_BUB1_I: Mad3/BUB 46.3 1.3E+02 0.0028 25.8 7.8 44 371-414 81-124 (126)
422 PF04910 Tcf25: Transcriptiona 45.7 3.8E+02 0.0083 28.1 16.3 51 700-753 112-165 (360)
423 KOG2581 26S proteasome regulat 44.6 4E+02 0.0086 28.0 12.6 124 669-792 139-280 (493)
424 PF11846 DUF3366: Domain of un 44.3 67 0.0015 30.0 6.5 53 702-754 119-171 (193)
425 COG4976 Predicted methyltransf 44.2 39 0.00084 31.9 4.4 54 770-823 6-59 (287)
426 PF13762 MNE1: Mitochondrial s 44.0 2.3E+02 0.0049 25.0 11.4 52 419-470 78-130 (145)
427 PF11768 DUF3312: Protein of u 43.9 3.2E+02 0.0069 30.0 11.6 23 630-652 413-435 (545)
428 PF07163 Pex26: Pex26 protein; 43.2 1.7E+02 0.0037 28.8 8.6 44 492-535 117-163 (309)
429 COG0790 FOG: TPR repeat, SEL1 42.7 3.7E+02 0.008 27.1 17.8 131 638-773 90-236 (292)
430 KOG0991 Replication factor C, 42.7 3.1E+02 0.0068 26.3 10.5 86 603-691 171-273 (333)
431 KOG3824 Huntingtin interacting 42.6 60 0.0013 32.0 5.6 58 739-796 128-187 (472)
432 KOG0686 COP9 signalosome, subu 42.3 2.1E+02 0.0046 29.9 9.5 59 391-449 152-216 (466)
433 COG3947 Response regulator con 41.9 3.7E+02 0.008 26.8 14.0 56 528-583 282-340 (361)
434 PF13929 mRNA_stabil: mRNA sta 41.9 3.7E+02 0.008 26.9 13.5 51 391-441 204-259 (292)
435 KOG0376 Serine-threonine phosp 41.4 38 0.00083 35.8 4.5 104 663-771 11-117 (476)
436 KOG4279 Serine/threonine prote 40.5 1E+02 0.0022 34.6 7.5 67 658-727 203-280 (1226)
437 cd08819 CARD_MDA5_2 Caspase ac 40.0 1.6E+02 0.0034 23.2 6.4 35 638-673 49-83 (88)
438 PF14863 Alkyl_sulf_dimr: Alky 38.5 97 0.0021 27.1 5.9 67 743-812 57-123 (141)
439 PF14689 SPOB_a: Sensor_kinase 38.1 68 0.0015 23.2 4.1 30 690-719 22-51 (62)
440 PF10366 Vps39_1: Vacuolar sor 38.0 1.5E+02 0.0033 24.5 6.7 26 659-684 42-67 (108)
441 KOG0687 26S proteasome regulat 37.9 4.5E+02 0.0097 26.7 12.8 159 539-719 36-209 (393)
442 PF11848 DUF3368: Domain of un 37.3 90 0.0019 21.2 4.4 36 220-255 10-45 (48)
443 PF04090 RNA_pol_I_TF: RNA pol 37.0 3.6E+02 0.0078 25.3 10.5 35 657-692 42-76 (199)
444 PF14561 TPR_20: Tetratricopep 36.7 2.1E+02 0.0046 22.6 7.6 62 758-819 21-85 (90)
445 PF08424 NRDE-2: NRDE-2, neces 36.6 4.9E+02 0.011 26.8 12.6 29 698-726 161-189 (321)
446 KOG2422 Uncharacterized conser 36.6 6.3E+02 0.014 28.0 15.1 95 427-521 349-447 (665)
447 cd00280 TRFH Telomeric Repeat 35.4 2.1E+02 0.0046 26.2 7.4 38 498-535 116-153 (200)
448 PF10579 Rapsyn_N: Rapsyn N-te 35.2 55 0.0012 25.0 3.3 45 771-815 18-65 (80)
449 cd08326 CARD_CASP9 Caspase act 34.7 1.4E+02 0.003 23.3 5.6 50 524-573 29-78 (84)
450 KOG4507 Uncharacterized conser 34.2 3E+02 0.0065 30.3 9.5 97 536-633 618-718 (886)
451 PF11848 DUF3368: Domain of un 33.7 1.2E+02 0.0026 20.5 4.5 35 429-463 11-45 (48)
452 TIGR02710 CRISPR-associated pr 33.6 5E+02 0.011 27.3 11.0 54 663-716 137-196 (380)
453 KOG1524 WD40 repeat-containing 33.5 2.1E+02 0.0045 30.9 8.1 57 729-788 575-631 (737)
454 KOG0292 Vesicle coat complex C 33.5 6.5E+02 0.014 29.5 12.2 132 633-789 651-783 (1202)
455 PF09670 Cas_Cas02710: CRISPR- 33.5 4.1E+02 0.0089 28.1 10.8 53 700-754 140-196 (379)
456 PF13934 ELYS: Nuclear pore co 33.3 4.5E+02 0.0098 25.3 16.1 20 662-681 114-133 (226)
457 KOG4521 Nuclear pore complex, 32.5 1E+03 0.022 29.2 13.9 23 630-652 925-947 (1480)
458 PF11663 Toxin_YhaV: Toxin wit 32.2 50 0.0011 28.2 2.9 32 567-600 106-137 (140)
459 TIGR01503 MthylAspMut_E methyl 31.2 6.4E+02 0.014 27.2 11.1 161 301-504 29-237 (480)
460 KOG2471 TPR repeat-containing 30.9 7.2E+02 0.016 26.9 11.8 63 764-829 211-273 (696)
461 cd00280 TRFH Telomeric Repeat 30.7 1.4E+02 0.0031 27.3 5.6 38 766-804 118-155 (200)
462 PF11663 Toxin_YhaV: Toxin wit 30.3 70 0.0015 27.4 3.5 32 223-256 106-137 (140)
463 PF09477 Type_III_YscG: Bacter 29.7 3.2E+02 0.0069 22.5 8.7 90 55-150 18-107 (116)
464 PRK10564 maltose regulon perip 29.7 96 0.0021 30.9 4.9 39 659-697 260-298 (303)
465 KOG2908 26S proteasome regulat 29.5 4.5E+02 0.0098 26.8 9.3 79 631-709 81-175 (380)
466 PF10255 Paf67: RNA polymerase 29.4 2E+02 0.0043 30.5 7.4 64 732-819 127-190 (404)
467 PF14669 Asp_Glu_race_2: Putat 29.0 4.7E+02 0.01 24.3 14.7 93 416-518 103-206 (233)
468 KOG2659 LisH motif-containing 29.0 3.8E+02 0.0082 25.7 8.3 20 698-717 71-90 (228)
469 PF12862 Apc5: Anaphase-promot 28.8 2.9E+02 0.0062 22.0 6.9 53 667-719 9-69 (94)
470 smart00777 Mad3_BUB1_I Mad3/BU 28.7 3.7E+02 0.0081 23.0 8.4 44 370-413 80-123 (125)
471 PRK10564 maltose regulon perip 28.7 72 0.0016 31.7 3.9 41 214-254 259-299 (303)
472 PF08967 DUF1884: Domain of un 28.4 55 0.0012 24.9 2.3 23 853-875 8-30 (85)
473 COG5191 Uncharacterized conser 28.2 90 0.002 31.0 4.3 77 723-799 103-182 (435)
474 PF11817 Foie-gras_1: Foie gra 28.1 1.6E+02 0.0035 28.9 6.4 19 700-718 187-205 (247)
475 PRK14700 recombination factor 28.0 2.7E+02 0.0059 28.0 7.7 57 567-623 137-198 (300)
476 smart00804 TAP_C C-terminal do 27.9 60 0.0013 23.6 2.4 25 330-354 38-62 (63)
477 cd02679 MIT_spastin MIT: domai 27.8 46 0.001 25.5 1.9 64 742-821 4-67 (79)
478 COG5191 Uncharacterized conser 26.9 68 0.0015 31.8 3.3 80 688-768 103-185 (435)
479 COG5108 RPO41 Mitochondrial DN 26.9 2.8E+02 0.006 31.0 7.9 91 291-381 33-131 (1117)
480 PF14689 SPOB_a: Sensor_kinase 26.8 1.1E+02 0.0023 22.2 3.6 25 660-684 27-51 (62)
481 KOG4567 GTPase-activating prot 26.5 6.8E+02 0.015 25.3 9.7 72 676-753 263-344 (370)
482 PRK13342 recombination factor 26.5 8.3E+02 0.018 26.2 15.2 37 567-603 241-277 (413)
483 PF08424 NRDE-2: NRDE-2, neces 25.9 7.4E+02 0.016 25.5 15.8 21 769-789 164-184 (321)
484 PRK13184 pknD serine/threonine 25.7 1.3E+03 0.027 28.1 23.9 118 663-786 742-867 (932)
485 KOG2062 26S proteasome regulat 25.0 1.1E+03 0.024 27.2 33.4 48 371-419 193-240 (929)
486 cd08332 CARD_CASP2 Caspase act 25.0 2.7E+02 0.0059 22.1 5.9 34 537-570 46-79 (90)
487 PF10255 Paf67: RNA polymerase 25.0 2.9E+02 0.0063 29.3 7.7 66 496-582 125-190 (404)
488 PRK11509 hydrogenase-1 operon 24.3 1.3E+02 0.0029 25.9 4.2 36 832-867 30-66 (132)
489 PF08311 Mad3_BUB1_I: Mad3/BUB 24.3 4.5E+02 0.0098 22.4 8.5 44 473-518 81-124 (126)
490 PHA02537 M terminase endonucle 23.7 3.8E+02 0.0083 25.8 7.6 105 670-791 97-210 (230)
491 TIGR02710 CRISPR-associated pr 23.7 8.8E+02 0.019 25.6 11.3 52 630-681 135-196 (380)
492 PF00244 14-3-3: 14-3-3 protei 23.3 7E+02 0.015 24.3 11.9 159 662-821 7-197 (236)
493 PF10516 SHNi-TPR: SHNi-TPR; 23.3 1.4E+02 0.0031 19.1 3.2 20 795-814 3-22 (38)
494 PF04781 DUF627: Protein of un 23.2 4.4E+02 0.0096 21.9 7.5 37 778-814 63-99 (111)
495 PF12968 DUF3856: Domain of Un 23.1 4.6E+02 0.01 22.2 9.4 24 728-751 56-79 (144)
496 COG5108 RPO41 Mitochondrial DN 23.1 5.4E+02 0.012 28.9 9.2 24 498-521 33-56 (1117)
497 KOG2168 Cullins [Cell cycle co 22.9 1.3E+03 0.028 27.2 17.9 26 496-521 638-663 (835)
498 PRK13342 recombination factor 22.9 9.7E+02 0.021 25.8 16.4 43 423-465 230-275 (413)
499 PF15015 NYD-SP12_N: Spermatog 22.7 1.6E+02 0.0035 30.7 5.1 17 815-831 309-325 (569)
500 PRK14962 DNA polymerase III su 22.3 1.1E+03 0.023 26.0 13.6 27 567-593 254-280 (472)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.8e-110 Score=975.09 Aligned_cols=725 Identities=31% Similarity=0.586 Sum_probs=710.3
Q ss_pred CCCchhHHHHHHHHhcCCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHhhccCCcchhhhHHHHHHHhCCCCCcchhh
Q 002834 106 NTDPVTWNILLSGFACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSACARLGGIFAGKSLHAYVIKFGLERHTLVGN 185 (875)
Q Consensus 106 ~~~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 185 (875)
.++..++|.++.+|++.| .+++|+.+|++|.+.| ++|+..+|..++++|.+.+.++.+.++++.+.+.|..++..++|
T Consensus 48 ~~~~~~~n~~i~~l~~~g-~~~~A~~l~~~m~~~g-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n 125 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHG-QLEQALKLLESMQELR-VPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGN 125 (857)
T ss_pred ccchhhHHHHHHHHHhCC-CHHHHHHHHHHHHhcC-CCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHH
Confidence 567888999999999999 9999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhcCChhHHHHHhccCCCCCeeeHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCChhhHHhHHHHhccCCcccc
Q 002834 186 SLTSMYAKRGLVHDAYSVFDSIEDKDVVSWNAVISGLSENKVLGDAFRLFSWMLTEPIKPNYATILNILPICASLDEDVG 265 (875)
Q Consensus 186 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 265 (875)
+|+.+|++.|+++.|.++|++|++||.++||++|.+|++.|++++|+++|++|...|+.||.+||+.++++|+..+ +
T Consensus 126 ~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~---~ 202 (857)
T PLN03077 126 AMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIP---D 202 (857)
T ss_pred HHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCcc---c
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999988 8
Q ss_pred ccchhHHHHHHHHhcccCCchhHhhhHHHHhHhcCChhHHHHHhhhcCCCCccchHHHHHHHHcCCCHHHHHHHHHHHHH
Q 002834 266 YFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAELLFRRMKSRDLVSWNAIIAGYASNDEWLKALNLFCELIT 345 (875)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 345 (875)
+..++++|..+.+.|..+ |..++++|+.+|+++|++++|.++|+.|++||.++||++|.+|++.|++++|+++|++|.+
T Consensus 203 ~~~~~~~~~~~~~~g~~~-~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~ 281 (857)
T PLN03077 203 LARGREVHAHVVRFGFEL-DVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRE 281 (857)
T ss_pred hhhHHHHHHHHHHcCCCc-ccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 999999999999998877 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcCCCCcchHHH
Q 002834 346 KEMIWPDSVTLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRRDLISWNS 425 (875)
Q Consensus 346 ~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 425 (875)
.| +.||..||+.++.+|++.|+++.+.+++..+.+.|+.++.. +|++|+.+|+++|++++|.++|++|..+|..+||+
T Consensus 282 ~g-~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~-~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~ 359 (857)
T PLN03077 282 LS-VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVS-VCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTA 359 (857)
T ss_pred cC-CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchH-HHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHH
Confidence 99 99999999999999999999999999999999999999988 99999999999999999999999999999999999
Q ss_pred HHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHh
Q 002834 426 MLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAK 505 (875)
Q Consensus 426 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 505 (875)
+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+.++++.+.+.|+ .++..+++.|+++|++
T Consensus 360 li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~---~~~~~~~n~Li~~y~k 436 (857)
T PLN03077 360 MISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGL---ISYVVVANALIEMYSK 436 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCC---CcchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred cCCHHHHHHHHHhhccCCCcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCchHHHHHHHHHHHC
Q 002834 506 CRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQAQ 585 (875)
Q Consensus 506 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 585 (875)
+|++++|.++|++|..+ |..+|++++.+| ++.|+.++|+.+|++|..
T Consensus 437 ~g~~~~A~~vf~~m~~~-d~vs~~~mi~~~-------------------------------~~~g~~~eA~~lf~~m~~- 483 (857)
T PLN03077 437 CKCIDKALEVFHNIPEK-DVISWTSIIAGL-------------------------------RLNNRCFEALIFFRQMLL- 483 (857)
T ss_pred cCCHHHHHHHHHhCCCC-CeeeHHHHHHHH-------------------------------HHCCCHHHHHHHHHHHHh-
Confidence 99999999999999876 899999999999 899999999999999986
Q ss_pred CCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCC-CchHHHHHHHHhHhcCCHHHHHHHhccCCCCChhhHHHHHH
Q 002834 586 GMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFD-GVRLNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIG 664 (875)
Q Consensus 586 g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 664 (875)
++.||..||..++.+|++.|.++.+.++|..+.+.|+. +..++++|+++|+++|++++|+++|+.+ .+|+.+||+||.
T Consensus 484 ~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~ 562 (857)
T PLN03077 484 TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLT 562 (857)
T ss_pred CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHH
Confidence 69999999999999999999999999999999999999 9999999999999999999999999999 899999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChH
Q 002834 665 GYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQIS 744 (875)
Q Consensus 665 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 744 (875)
+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|.+.+|+.|+..+|++|+++|+++|+++
T Consensus 563 ~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~ 642 (857)
T PLN03077 563 GYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLT 642 (857)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999999999999999999999999977999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 002834 745 DAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTRDL 824 (875)
Q Consensus 745 ~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 824 (875)
+|.+++++|+.+||..+|++|+++|+.+|+.+.|+.+++++++++|+++..|+.|+++|+..|+|++|.++++.|+++|+
T Consensus 643 eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~ 722 (857)
T PLN03077 643 EAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGL 722 (857)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeEEEeCCEEeEEecCCCCCCChHHHHHHHHHHHHHHHhcCCccCC
Q 002834 825 KKPAACSWIEVERKNNAFMAGDYSHPRRDMIYWVLSILDEQIKDQVTISEI 875 (875)
Q Consensus 825 ~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 875 (875)
+|+||+|||+++|++|.|++||++||+.++||.+|+.|..+|++.||+||.
T Consensus 723 ~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~ 773 (857)
T PLN03077 723 TVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSE 773 (857)
T ss_pred CCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCc
Confidence 999999999999999999999999999999999999999999999999983
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.6e-89 Score=801.63 Aligned_cols=676 Identities=27% Similarity=0.479 Sum_probs=650.0
Q ss_pred CCCcchHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCCCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCCchhhh
Q 002834 3 EPNAKSWITIINGFCRDGLHKEALSLFAHELQSSPSVRHNHQLFSAVLKSCTSLADILLGKALHGYVTKLGHISCQAVSK 82 (875)
Q Consensus 3 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (875)
.|+..++|.+|+++++.|++++|..+|+.|.+.+ ..|+..+|..++++|.+.+.+..+.++++.+.+.+..++..++|
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n 125 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELR--VPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGN 125 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHH
Confidence 4677789999999999999999999999999865 88999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCchHHHHhhccCCCCCchhHHHHHHHHhcCCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHhhccCCc
Q 002834 83 ALLNLYAKCGVIDDCYKLFGQVDNTDPVTWNILLSGFACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSACARLGGI 162 (875)
Q Consensus 83 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~ 162 (875)
+|+.+|++.|+++.|.++|++|++||+++||++|.+|++.| ++++|+++|++|...| +.||..||+.+|++|+..+++
T Consensus 126 ~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g-~~~~A~~~f~~M~~~g-~~Pd~~t~~~ll~~~~~~~~~ 203 (857)
T PLN03077 126 AMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAG-YFDEALCLYHRMLWAG-VRPDVYTFPCVLRTCGGIPDL 203 (857)
T ss_pred HHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCC-CHHHHHHHHHHHHHcC-CCCChhHHHHHHHHhCCccch
Confidence 99999999999999999999999999999999999999999 9999999999999999 999999999999999999999
Q ss_pred chhhhHHHHHHHhCCCCCcchhhHHHHHhHhcCChhHHHHHhccCCCCCeeeHHHHHHHHHcCCCcchHHHHHHHHHhCC
Q 002834 163 FAGKSLHAYVIKFGLERHTLVGNSLTSMYAKRGLVHDAYSVFDSIEDKDVVSWNAVISGLSENKVLGDAFRLFSWMLTEP 242 (875)
Q Consensus 163 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g 242 (875)
..+.+++..|.+.|+.||..++|+||.+|+++|++++|.++|++|++||.++||+||.+|++.|++++|+++|++|.+.|
T Consensus 204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g 283 (857)
T PLN03077 204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELS 283 (857)
T ss_pred hhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHhHHHHhccCCccccccchhHHHHHHHHhcccCCchhHhhhHHHHhHhcCChhHHHHHhhhcCCCCccchHH
Q 002834 243 IKPNYATILNILPICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAELLFRRMKSRDLVSWNA 322 (875)
Q Consensus 243 ~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 322 (875)
+.||..||+.++.+|+..+ +...+++++..+.+.|..+ |..+|++|+.+|+++|++++|.++|+.|.+||.++||.
T Consensus 284 ~~Pd~~ty~~ll~a~~~~g---~~~~a~~l~~~~~~~g~~~-d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~ 359 (857)
T PLN03077 284 VDPDLMTITSVISACELLG---DERLGREMHGYVVKTGFAV-DVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTA 359 (857)
T ss_pred CCCChhHHHHHHHHHHhcC---ChHHHHHHHHHHHHhCCcc-chHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHH
Confidence 9999999999999999999 8999999999999998877 99999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhcC
Q 002834 323 IIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKC 402 (875)
Q Consensus 323 li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 402 (875)
+|.+|++.|++++|+++|++|.+.| +.||..||+.++.+|++.|+++.+.++++.+.+.|..++.. ++++|+++|+++
T Consensus 360 li~~~~~~g~~~~A~~lf~~M~~~g-~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~-~~n~Li~~y~k~ 437 (857)
T PLN03077 360 MISGYEKNGLPDKALETYALMEQDN-VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVV-VANALIEMYSKC 437 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhC-CCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchH-HHHHHHHHHHHc
Confidence 9999999999999999999999999 99999999999999999999999999999999999998888 999999999999
Q ss_pred CChhHHHHHHHhcCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHH
Q 002834 403 SDMEAAYRTFLMICRRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLI 482 (875)
Q Consensus 403 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 482 (875)
|++++|.++|++|.++|+.+||++|.+|+++|+.++|+.+|++|.. ++.||..||+.+|.+|++.|+.+.+.+++..+.
T Consensus 438 g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~ 516 (857)
T PLN03077 438 KCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVL 516 (857)
T ss_pred CCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999986 699999999999999999999999999999999
Q ss_pred HhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCccHHHH
Q 002834 483 KTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFMTFSRIYARDLTPWNLM 562 (875)
Q Consensus 483 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l 562 (875)
+.|+ .++..++++++++|+++|++++|.++|+.+ .||..+|+++|.+|
T Consensus 517 ~~g~---~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~--------------------------- 564 (857)
T PLN03077 517 RTGI---GFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGY--------------------------- 564 (857)
T ss_pred HhCC---CccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHH---------------------------
Confidence 9999 999999999999999999999999999998 56999999999999
Q ss_pred HHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHH-HhcCC-CchHHHHHHHHhHhcCC
Q 002834 563 IRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVI-RACFD-GVRLNGALLHLYAKCGS 640 (875)
Q Consensus 563 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~-~~~~~-~~~~~~~l~~~~~~~g~ 640 (875)
++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++++.+. +.|.. +...|+.++++|+++|+
T Consensus 565 ----~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~ 640 (857)
T PLN03077 565 ----VAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGK 640 (857)
T ss_pred ----HHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999999999998 66877 99999999999999999
Q ss_pred HHHHHHHhccCC-CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhh-HHHHHHHHhhcCcHHHHHHHHHHhH
Q 002834 641 IFSASKIFQCHP-QKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVV-ITAVLSACSHAGLVDEGLEIFRSIE 718 (875)
Q Consensus 641 ~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~a~~~~g~~~~a~~~~~~~~ 718 (875)
+++|.+++++|+ +||..+|++|+.+|..+|+.+.+....+++.+ +.|+... |..+...|...|++++|.++.+.|+
T Consensus 641 ~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~ 718 (857)
T PLN03077 641 LTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDEVARVRKTMR 718 (857)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 999999999996 69999999999999999999999999999887 5666554 5555669999999999999999998
Q ss_pred HHhCCCCChh
Q 002834 719 KVQGIKPTPE 728 (875)
Q Consensus 719 ~~~~~~p~~~ 728 (875)
+ .|+++++.
T Consensus 719 ~-~g~~k~~g 727 (857)
T PLN03077 719 E-NGLTVDPG 727 (857)
T ss_pred H-cCCCCCCC
Confidence 8 78888764
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.1e-80 Score=706.86 Aligned_cols=526 Identities=30% Similarity=0.534 Sum_probs=512.8
Q ss_pred CCCccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHhcCCCCchhhHHH
Q 002834 314 SRDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGN 393 (875)
Q Consensus 314 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 393 (875)
.++..+|+.+|.++.+.|++++|+++|+.|...+.+.||..||+.++.+|.+.++++.+.+++..+.+.|+.++.. +++
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~-~~n 162 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQY-MMN 162 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchH-HHH
Confidence 3577899999999999999999999999999875578999999999999999999999999999999999999877 999
Q ss_pred HHHHHHhcCCChhHHHHHHHhcCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchhh
Q 002834 394 ALVSFYAKCSDMEAAYRTFLMICRRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGM 473 (875)
Q Consensus 394 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 473 (875)
.|+.+|+++|+++.|.++|++|..||..+||++|.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|+..+..+.
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcccHHHHHHHhhcCCChHHHHHHHHhhhc
Q 002834 474 VKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFMTFSRIYA 553 (875)
Q Consensus 474 a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 553 (875)
+.+++..+.+.|+ .++..+++.|+++|+++|++++|.++|++|..+ |+++|++++.+|
T Consensus 243 ~~~l~~~~~~~g~---~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~-~~vt~n~li~~y------------------ 300 (697)
T PLN03081 243 GQQLHCCVLKTGV---VGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK-TTVAWNSMLAGY------------------ 300 (697)
T ss_pred HHHHHHHHHHhCC---CccceeHHHHHHHHHHCCCHHHHHHHHHhCCCC-ChhHHHHHHHHH------------------
Confidence 9999999999999 899999999999999999999999999999876 888999988888
Q ss_pred CCCccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCC-CchHHHHHH
Q 002834 554 RDLTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFD-GVRLNGALL 632 (875)
Q Consensus 554 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~ 632 (875)
++.|++++|+++|++|.+.|+.||..||+.++.+|++.|.++.|.++|..+.+.|+. +..++++|+
T Consensus 301 -------------~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li 367 (697)
T PLN03081 301 -------------ALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALV 367 (697)
T ss_pred -------------HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHH
Confidence 999999999999999999999999999999999999999999999999999999998 999999999
Q ss_pred HHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHH
Q 002834 633 HLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLE 712 (875)
Q Consensus 633 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~ 712 (875)
++|+++|++++|.++|++|.++|+.+||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+
T Consensus 368 ~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~ 447 (697)
T PLN03081 368 DLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWE 447 (697)
T ss_pred HHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCC
Q 002834 713 IFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADN 792 (875)
Q Consensus 713 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 792 (875)
+|+.|.+.+|+.|+..+|++|+++|+++|++++|.+++++|+..|+..+|++|+.+|..+|+++.|+.+++++++++|++
T Consensus 448 ~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~ 527 (697)
T PLN03081 448 IFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEK 527 (697)
T ss_pred HHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCC
Confidence 99999988899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHhcCCchhHHHHHHHHHhCCCcCCCceeEEEeCCEEeEEecCCCCCCChHHHHHHHHHHHHHHHhcCCc
Q 002834 793 IGNYVVMSNLYAADARWDGVVEIRKLMKTRDLKKPAACSWIEVERKNNAFMAGDYSHPRRDMIYWVLSILDEQIKDQVTI 872 (875)
Q Consensus 793 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 872 (875)
+..|..|+++|++.|+|++|.++++.|+++|++|.||+|||++++++|.|++||..||+.++||.+|+.|..+|++.||+
T Consensus 528 ~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~ 607 (697)
T PLN03081 528 LNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYV 607 (697)
T ss_pred CcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 002834 873 SEI 875 (875)
Q Consensus 873 ~~~ 875 (875)
||.
T Consensus 608 ~~~ 610 (697)
T PLN03081 608 AEE 610 (697)
T ss_pred CCc
Confidence 983
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3e-65 Score=582.41 Aligned_cols=475 Identities=21% Similarity=0.340 Sum_probs=459.0
Q ss_pred CCCchhHHHHHHHHhcCCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHhhccCCcchhhhHHHHHHHhCCCCCcchhh
Q 002834 106 NTDPVTWNILLSGFACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSACARLGGIFAGKSLHAYVIKFGLERHTLVGN 185 (875)
Q Consensus 106 ~~~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 185 (875)
.++..+|+.+|.+|.+.| ++.+|+++|+.|...+++.||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+||
T Consensus 84 ~~~~~~~~~~i~~l~~~g-~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACG-RHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCceeHHHHHHHHHcCC-CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 356779999999999999 9999999999999876578999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhcCChhHHHHHhccCCCCCeeeHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCChhhHHhHHHHhccCCcccc
Q 002834 186 SLTSMYAKRGLVHDAYSVFDSIEDKDVVSWNAVISGLSENKVLGDAFRLFSWMLTEPIKPNYATILNILPICASLDEDVG 265 (875)
Q Consensus 186 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 265 (875)
.|+++|+++|+++.|.++|++|++||.++||++|.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|+..+ .
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~---~ 239 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG---S 239 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC---c
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred ccchhHHHHHHHHhcccCCchhHhhhHHHHhHhcCChhHHHHHhhhcCCCCccchHHHHHHHHcCCCHHHHHHHHHHHHH
Q 002834 266 YFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAELLFRRMKSRDLVSWNAIIAGYASNDEWLKALNLFCELIT 345 (875)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 345 (875)
...++++|..+.+.+..+ |..++++|+.+|+++|++++|.++|+.|.++|+++||++|.+|++.|++++|+++|++|.+
T Consensus 240 ~~~~~~l~~~~~~~g~~~-d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~ 318 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVG-DTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRD 318 (697)
T ss_pred HHHHHHHHHHHHHhCCCc-cceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 999999999999999877 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcCCCCcchHHH
Q 002834 346 KEMIWPDSVTLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRRDLISWNS 425 (875)
Q Consensus 346 ~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 425 (875)
.| +.||..||++++.+|++.|+++.|.+++..+.+.|+.++.. ++++|+++|+++|++++|.++|++|.++|+.+||+
T Consensus 319 ~g-~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~-~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~ 396 (697)
T PLN03081 319 SG-VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIV-ANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNA 396 (697)
T ss_pred cC-CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCee-ehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHH
Confidence 99 99999999999999999999999999999999999999888 99999999999999999999999999999999999
Q ss_pred HHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHHH-hcCCCCCCchhHHHHHHHHHH
Q 002834 426 MLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIK-TGLLLGDTEHNIGNAILDAYA 504 (875)
Q Consensus 426 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~li~~~~ 504 (875)
||.+|++.|+.++|+++|++|.+.|+.||..||+.+|.+|++.|..+++.++|+.|.+ .|+ .|+..+|++++++|+
T Consensus 397 lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~---~p~~~~y~~li~~l~ 473 (697)
T PLN03081 397 LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRI---KPRAMHYACMIELLG 473 (697)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC---CCCccchHhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999986 588 999999999999999
Q ss_pred hcCCHHHHHHHHHhhccCCCcccHHHHHHHhhcCCChHHHHHHHHhhhcCC---CccHHHHHHHHHHcCCchHHHHHHHH
Q 002834 505 KCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFMTFSRIYARD---LTPWNLMIRVYAENDFPNQALSLFLK 581 (875)
Q Consensus 505 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~ 581 (875)
+.|++++|.++++++...|+..+|++++.+|...|+++.|..+++++...+ ..+|..|++.|++.|++++|.+++++
T Consensus 474 r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~ 553 (697)
T PLN03081 474 REGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVET 553 (697)
T ss_pred hcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999886544 44699999999999999999999999
Q ss_pred HHHCCCCCC
Q 002834 582 LQAQGMKPD 590 (875)
Q Consensus 582 m~~~g~~p~ 590 (875)
|.+.|++..
T Consensus 554 m~~~g~~k~ 562 (697)
T PLN03081 554 LKRKGLSMH 562 (697)
T ss_pred HHHcCCccC
Confidence 999998643
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.9e-65 Score=579.45 Aligned_cols=475 Identities=17% Similarity=0.212 Sum_probs=426.8
Q ss_pred CCCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcC-CCCchhhhHHHHHHHccCCchHHHHhhccCCCCCchhHHHHHH
Q 002834 39 VRHNHQLFSAVLKSCTSLADILLGKALHGYVTKLGH-ISCQAVSKALLNLYAKCGVIDDCYKLFGQVDNTDPVTWNILLS 117 (875)
Q Consensus 39 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 117 (875)
..++...|..++..|++.|++..|.+++++|.+.|+ +++..+++.++.+|.+.|.+++|..+|+.|+.|+..+||.+|.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 456677899999999999999999999999999885 5778888889999999999999999999999999999999999
Q ss_pred HHhcCCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHhhccCCcchhhhHHHHHHHhCCCCCcchhhHHHHHhHhcCCh
Q 002834 118 GFACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSACARLGGIFAGKSLHAYVIKFGLERHTLVGNSLTSMYAKRGLV 197 (875)
Q Consensus 118 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 197 (875)
+|++.| ++++|.++|++|.+.| +.||..+|+.||.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|++
T Consensus 446 a~~k~g-~~e~A~~lf~~M~~~G-l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 446 VCASSQ-DIDGALRVLRLVQEAG-LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHhCc-CHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 999999 9999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhccCC----CCCeeeHHHHHHHHHcCCCcchHHHHHHHHHh--CCCCCChhhHHhHHHHhccCCccccccchhH
Q 002834 198 HDAYSVFDSIE----DKDVVSWNAVISGLSENKVLGDAFRLFSWMLT--EPIKPNYATILNILPICASLDEDVGYFFGRE 271 (875)
Q Consensus 198 ~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~ 271 (875)
++|.++|++|. .||..+|+.||.+|++.|++++|.++|++|.. .|+.|
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-------------------------- 577 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-------------------------- 577 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC--------------------------
Confidence 99999999996 38999999999999999999999999999976 56777
Q ss_pred HHHHHHHhcccCCchhHhhhHHHHhHhcCChhHHHHHhhhcCC----CCccchHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 002834 272 IHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAELLFRRMKS----RDLVSWNAIIAGYASNDEWLKALNLFCELITKE 347 (875)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 347 (875)
|..+|++|+.+|++.|++++|.++|+.|.+ |+..+||.+|.+|++.|++++|+++|++|.+.|
T Consensus 578 -------------D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G 644 (1060)
T PLN03218 578 -------------DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG 644 (1060)
T ss_pred -------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 788899999999999999999999999985 677999999999999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHhccCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhHHHHHHHhc----CCCCcchH
Q 002834 348 MIWPDSVTLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMI----CRRDLISW 423 (875)
Q Consensus 348 ~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~ 423 (875)
+.||..||+.++.+|++.|+++.|.+++..|.+.|+.++.. +|++||.+|+++|++++|.++|++| ..||..+|
T Consensus 645 -v~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~-tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvvty 722 (1060)
T PLN03218 645 -VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV-SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTM 722 (1060)
T ss_pred -CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999999999988 9999999999999999999999999 46899999
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHH
Q 002834 424 NSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAY 503 (875)
Q Consensus 424 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 503 (875)
|+||.+|++.|++++|+++|++|...|+.||..||+.+|.+|++.|+.+.|.++|..|.+.|+ .|+..+|++++.++
T Consensus 723 N~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi---~pd~~tynsLIglc 799 (1060)
T PLN03218 723 NALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGI---KPNLVMCRCITGLC 799 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999 99999999998765
Q ss_pred HhcCCHHHHHHHHHhhccCCCcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCchHHHHHHHHHH
Q 002834 504 AKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQ 583 (875)
Q Consensus 504 ~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 583 (875)
.+ .+++|.++.+.+.. |+. .... ...+..+.|+.+|++|.
T Consensus 800 ~~--~y~ka~~l~~~v~~------f~~-g~~~-------------------------------~~n~w~~~Al~lf~eM~ 839 (1060)
T PLN03218 800 LR--RFEKACALGEPVVS------FDS-GRPQ-------------------------------IENKWTSWALMVYRETI 839 (1060)
T ss_pred HH--HHHHHhhhhhhhhh------hhc-cccc-------------------------------cccchHHHHHHHHHHHH
Confidence 42 35555544332221 110 0000 22334567999999999
Q ss_pred HCCCCCCcchHhcHHH
Q 002834 584 AQGMKPDAVTIMSLLP 599 (875)
Q Consensus 584 ~~g~~p~~~~~~~ll~ 599 (875)
+.|+.||..||..++.
T Consensus 840 ~~Gi~Pd~~T~~~vL~ 855 (1060)
T PLN03218 840 SAGTLPTMEVLSQVLG 855 (1060)
T ss_pred HCCCCCCHHHHHHHHH
Confidence 9999999888876663
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=9.7e-64 Score=568.83 Aligned_cols=528 Identities=17% Similarity=0.213 Sum_probs=458.9
Q ss_pred CCCCcchHHHHHHHhhccCCcchhhhHHHHHHHhCC-CCCcchhhHHHHHhHhcCChhHHHHHhccCCCCCeeeHHHHHH
Q 002834 142 PKPNSVTVAIVLSACARLGGIFAGKSLHAYVIKFGL-ERHTLVGNSLTSMYAKRGLVHDAYSVFDSIEDKDVVSWNAVIS 220 (875)
Q Consensus 142 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 220 (875)
-.++...|..++..+++.|+++.|.++|++|.+.|+ .++..+++.++..|.+.|.+++|.++|+.|..||..+|+.+|.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 356788899999999999999999999999999995 5777788899999999999999999999999999999999999
Q ss_pred HHHcCCCcchHHHHHHHHHhCCCCCChhhHHhHHHHhccCCccccccchhHHHHHHHHhcccCCchhHhhhHHHHhHhcC
Q 002834 221 GLSENKVLGDAFRLFSWMLTEPIKPNYATILNILPICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFG 300 (875)
Q Consensus 221 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 300 (875)
+|++.|+++.|.++|++|.+.|+.| |..+|+.||.+|++.|
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~p---------------------------------------D~~tynsLI~~y~k~G 486 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKA---------------------------------------DCKLYTTLISTCAKSG 486 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCC---------------------------------------CHHHHHHHHHHHHhCc
Confidence 9999999999999999999999988 7888999999999999
Q ss_pred ChhHHHHHhhhcC----CCCccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChhhHHHHH
Q 002834 301 RTEEAELLFRRMK----SRDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIH 376 (875)
Q Consensus 301 ~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~ 376 (875)
++++|.++|++|. .||..+|+.+|.+|++.|++++|+++|++|.+.| +.||..||+.++.+|++.|+++.|.+++
T Consensus 487 ~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~G-v~PD~vTYnsLI~a~~k~G~~deA~~lf 565 (1060)
T PLN03218 487 KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN-VKPDRVVFNALISACGQSGAVDRAFDVL 565 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999998 4899999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHh--cCCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcCC----CCcchHHHHHHHHhccCChhHHHHHHHHHHHCC
Q 002834 377 GYFLR--HPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICR----RDLISWNSMLDAFSESGYNSQFLNLLNCMLMEG 450 (875)
Q Consensus 377 ~~~~~--~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 450 (875)
..|.+ .++.|+.. +|++++.+|++.|++++|.++|+.|.+ ++..+|+++|.+|++.|++++|.++|++|.+.|
T Consensus 566 ~eM~~~~~gi~PD~v-TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G 644 (1060)
T PLN03218 566 AEMKAETHPIDPDHI-TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG 644 (1060)
T ss_pred HHHHHhcCCCCCcHH-HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 99987 56777777 999999999999999999999999954 567899999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcc---CCCccc
Q 002834 451 IRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLE---KRNLVT 527 (875)
Q Consensus 451 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~p~~~~ 527 (875)
+.||..||+.+|.+|++.|+.+.|.++|+.|.+.|+ .|+..+|+.+|.+|+++|++++|.++|++|.. .||..+
T Consensus 645 v~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~---~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvvt 721 (1060)
T PLN03218 645 VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI---KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVST 721 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 999999999999999999999999999999999999 99999999999999999999999999999875 378889
Q ss_pred HHHHHHHhhcCCChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccch
Q 002834 528 FNPVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASV 607 (875)
Q Consensus 528 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~ 607 (875)
|++||.+| ++.|++++|+++|++|.+.|+.||..||..++.+|++.|++
T Consensus 722 yN~LI~gy-------------------------------~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~l 770 (1060)
T PLN03218 722 MNALITAL-------------------------------CEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA 770 (1060)
T ss_pred HHHHHHHH-------------------------------HHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 99998888 77777777777777777777778888888888888888888
Q ss_pred HHHHHHHHHHHHhcCC-CchHHHHHHHHh----HhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Q 002834 608 HLLRQCHGYVIRACFD-GVRLNGALLHLY----AKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDM 682 (875)
Q Consensus 608 ~~a~~~~~~~~~~~~~-~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 682 (875)
+.|.++|..+.+.|+. +..++++++.++ .+++...++...|+.+...+... ..+.|+.+|++|
T Consensus 771 e~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~------------w~~~Al~lf~eM 838 (1060)
T PLN03218 771 DVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENK------------WTSWALMVYRET 838 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccc------------hHHHHHHHHHHH
Confidence 8888888888777777 777777777653 33333333333343322222223 345799999999
Q ss_pred HHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC---CCCCH
Q 002834 683 LELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP---VEADC 759 (875)
Q Consensus 683 ~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~ 759 (875)
++.|+.||..||+.++.++++.+..+.+..+++.|.. .+..|+..+|+++++++++. .++|..++++|. +.|+.
T Consensus 839 ~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~-~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 839 ISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGI-SADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred HHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhcc-CCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCc
Confidence 9999999999999999888888899888888887755 46777888999999998532 468999999993 45543
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.8e-42 Score=414.80 Aligned_cols=791 Identities=12% Similarity=0.022 Sum_probs=543.8
Q ss_pred CcchHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCCCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCCchhhhHH
Q 002834 5 NAKSWITIINGFCRDGLHKEALSLFAHELQSSPSVRHNHQLFSAVLKSCTSLADILLGKALHGYVTKLGHISCQAVSKAL 84 (875)
Q Consensus 5 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 84 (875)
+...+-.....+...|++++|+..|++..+.. ..+...+..+...+...|+++.|...+..+.+.+. ++......+
T Consensus 21 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~ 96 (899)
T TIGR02917 21 SPESLIEAAKSYLQKNKYKAAIIQLKNALQKD---PNDAEARFLLGKIYLALGDYAAAEKELRKALSLGY-PKNQVLPLL 96 (899)
T ss_pred CHHHHHHHHHHHHHcCChHhHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-ChhhhHHHH
Confidence 33344444555556666666666666666542 22334445555556666666666666666655543 233333444
Q ss_pred HHHHHccCCchHHHHhhccCCC----CCchhHHHHHHHHhcCCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHhhccC
Q 002834 85 LNLYAKCGVIDDCYKLFGQVDN----TDPVTWNILLSGFACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSACARLG 160 (875)
Q Consensus 85 ~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~ 160 (875)
...+.+.|++++|...+..... .....+..+...+...| ++++|...|+++.+.. +.+...+..+...+...|
T Consensus 97 a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~ 173 (899)
T TIGR02917 97 ARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLG-QLELAQKSYEQALAID--PRSLYAKLGLAQLALAEN 173 (899)
T ss_pred HHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHCC
Confidence 5555555555555555544431 11223334444444555 5555555555555443 233344444555555555
Q ss_pred CcchhhhHHHHHHHhCCCCCcchhhHHHHHhHhcCChhHHHHHhccCCC---CCeeeHHHHHHHHHcCCCcchHHHHHHH
Q 002834 161 GIFAGKSLHAYVIKFGLERHTLVGNSLTSMYAKRGLVHDAYSVFDSIED---KDVVSWNAVISGLSENKVLGDAFRLFSW 237 (875)
Q Consensus 161 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~ 237 (875)
+++.|..+++.+.+.. +++...+..+...+...|++++|...|++..+ .+...+..++..+...|++++|...++.
T Consensus 174 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 252 (899)
T TIGR02917 174 RFDEARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADA 252 (899)
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555555555554432 23334444455555555555555555554432 1233344444444445555555555444
Q ss_pred HHhCCC--------------------------------CCChhh-HHhHHHHhccCCccccccchhHHHHHHHHhcccCC
Q 002834 238 MLTEPI--------------------------------KPNYAT-ILNILPICASLDEDVGYFFGREIHCYVLRRAELIA 284 (875)
Q Consensus 238 m~~~g~--------------------------------~p~~~t-~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (875)
+.+... .|+... +..+-..+...+ +...+...+..+.+... .
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g---~~~~A~~~~~~~~~~~p--~ 327 (899)
T TIGR02917 253 LLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLG---NLEQAYQYLNQILKYAP--N 327 (899)
T ss_pred HHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCC--C
Confidence 443221 122111 111111222333 44555555555544322 2
Q ss_pred chhHhhhHHHHhHhcCChhHHHHHhhhcCC---CCccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHH
Q 002834 285 DVSVCNALVSFYLRFGRTEEAELLFRRMKS---RDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLP 361 (875)
Q Consensus 285 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~ 361 (875)
+...+..+...+.+.|++++|...++.+.. .+...+..+...+.+.|++++|.++|+++.+.. +.+...+..+..
T Consensus 328 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~ 405 (899)
T TIGR02917 328 SHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD--PENAAARTQLGI 405 (899)
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHH
Confidence 456667777888888888888888877654 345567777888888888888888888887653 224455666666
Q ss_pred HHhccCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcCC---CCcchHHHHHHHHhccCChhH
Q 002834 362 ACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICR---RDLISWNSMLDAFSESGYNSQ 438 (875)
Q Consensus 362 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 438 (875)
.+...|+.+.|...+..+.+..... ......++..|.+.|++++|.++++.+.. .+..+|..+...+...|++++
T Consensus 406 ~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 483 (899)
T TIGR02917 406 SKLSQGDPSEAIADLETAAQLDPEL--GRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAK 483 (899)
T ss_pred HHHhCCChHHHHHHHHHHHhhCCcc--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHH
Confidence 7778888888888888877665322 22556677888888888888888887743 356778888888899999999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 002834 439 FLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQS 518 (875)
Q Consensus 439 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 518 (875)
|.+.|+++.+.. +.+...+..+...+...|+++.+.+.++.+.+.. +.+...+..+...+.+.|+.++|...+++
T Consensus 484 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 558 (899)
T TIGR02917 484 AREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID----PKNLRAILALAGLYLRTGNEEEAVAWLEK 558 (899)
T ss_pred HHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----cCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999998887753 2234456667777888888999999998888765 55677788888888889999999999988
Q ss_pred hccC-C-CcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCc---cHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcch
Q 002834 519 LLEK-R-NLVTFNPVISGYANCGSADEAFMTFSRIYARDLT---PWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVT 593 (875)
Q Consensus 519 ~~~~-p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 593 (875)
+... | +...+..++..|...|++++|..+++++...++. .|..++.+|.+.|++++|+..|+++.+.. +.+...
T Consensus 559 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 637 (899)
T TIGR02917 559 AAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALA 637 (899)
T ss_pred HHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 7654 3 5567778888888999999999999888654433 38888899999999999999999887653 234456
Q ss_pred HhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcC
Q 002834 594 IMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHG 670 (875)
Q Consensus 594 ~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 670 (875)
+..+...+...|+.+.|..++..+.+..+.+...+..++..+.+.|++++|.++++.+.+ .+...+..+...+...|
T Consensus 638 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 717 (899)
T TIGR02917 638 LLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQK 717 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCC
Confidence 777778888889999999999988888777888888899999999999999999988765 45667888888899999
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHH
Q 002834 671 MGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLV 750 (875)
Q Consensus 671 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 750 (875)
++++|++.|+++... .|+..++..+..++.+.|++++|.+.++++.+. .+.+...+..++..|...|++++|.+.+
T Consensus 718 ~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~ 793 (899)
T TIGR02917 718 DYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHY 793 (899)
T ss_pred CHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 999999999998885 466677777888899999999999999988773 3345668888899999999999999999
Q ss_pred HhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 002834 751 NRMP--VEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTRD 823 (875)
Q Consensus 751 ~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 823 (875)
+++. .++++.++..+...+...|+ ++|+..+++++++.|+++..+..++.+|...|++++|.+.++.+.+.+
T Consensus 794 ~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 794 RTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 8884 44467888889898988888 789999999999999999999999999999999999999988887654
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.7e-41 Score=408.24 Aligned_cols=790 Identities=11% Similarity=0.008 Sum_probs=605.0
Q ss_pred CcchHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCC--------------------------------CChhhHHHHHHH
Q 002834 5 NAKSWITIINGFCRDGLHKEALSLFAHELQSSPSVR--------------------------------HNHQLFSAVLKS 52 (875)
Q Consensus 5 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------------------------~~~~~~~~ll~~ 52 (875)
+...|..+..++.+.|++++|+..|+++...+|... .+...+..+...
T Consensus 55 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (899)
T TIGR02917 55 DAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLA 134 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHH
Confidence 334778888999999999999999998887643210 011223333344
Q ss_pred hcccCchHHHHHHHHHHHHhcCCCCchhhhHHHHHHHccCCchHHHHhhccCCC---CCchhHHHHHHHHhcCCCChhHH
Q 002834 53 CTSLADILLGKALHGYVTKLGHISCQAVSKALLNLYAKCGVIDDCYKLFGQVDN---TDPVTWNILLSGFACSHVDDARV 129 (875)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~~a 129 (875)
+...|++..|...++.+.+.. +.+...+..+...+...|++++|.++++++.. ++...|..+...+...| ++++|
T Consensus 135 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~A 212 (899)
T TIGR02917 135 YLGLGQLELAQKSYEQALAID-PRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLG-NIELA 212 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcC-CHHHH
Confidence 445555555555555555433 22344555555555666666666666655421 23344555555555555 66666
Q ss_pred HHHHHHhHhcCCCCCCcchHHHHHHHhhccCCcchhhhHHHHHHHhCCCCCcchhhHHHHHhHhcCChhHHHHHhccCCC
Q 002834 130 MNLFYNMHVRDQPKPNSVTVAIVLSACARLGGIFAGKSLHAYVIKFGLERHTLVGNSLTSMYAKRGLVHDAYSVFDSIED 209 (875)
Q Consensus 130 ~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 209 (875)
...|++..... +.+..++..+...+...|+++.|...++.+.+... .+...+......+...|++++|...|+++.+
T Consensus 213 ~~~~~~a~~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 289 (899)
T TIGR02917 213 LAAYRKAIALR--PNNPAVLLALATILIEAGEFEEAEKHADALLKKAP-NSPLAHYLKALVDFQKKNYEDARETLQDALK 289 (899)
T ss_pred HHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 66666665544 34455555555666666666666666666655432 2222333333344556666666666666543
Q ss_pred CCe---eeHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCC-hhhHHhHHHHhccCCccccccchhHHHHHHHHhcccCCc
Q 002834 210 KDV---VSWNAVISGLSENKVLGDAFRLFSWMLTEPIKPN-YATILNILPICASLDEDVGYFFGREIHCYVLRRAELIAD 285 (875)
Q Consensus 210 ~~~---~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (875)
.+. ..+..+...+...|++++|...++...+. .|+ ...+..+.......+ ....+...+..+..... .+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~~--~~ 362 (899)
T TIGR02917 290 SAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKY--APNSHQARRLLASIQLRLG---RVDEAIATLSPALGLDP--DD 362 (899)
T ss_pred hCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHCC---CHHHHHHHHHHHHhcCC--CC
Confidence 221 22333445567789999999999888765 343 344444555556666 67777777776665432 26
Q ss_pred hhHhhhHHHHhHhcCChhHHHHHhhhcCC---CCccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHH
Q 002834 286 VSVCNALVSFYLRFGRTEEAELLFRRMKS---RDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPA 362 (875)
Q Consensus 286 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~ 362 (875)
..++..+...+.+.|++++|.++|+.+.+ .+...|..+...+...|++++|++.|+.+.+.. . ........++..
T Consensus 363 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~-~~~~~~~~l~~~ 440 (899)
T TIGR02917 363 PAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLD-P-ELGRADLLLILS 440 (899)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-C-cchhhHHHHHHH
Confidence 77889999999999999999999998764 345567788888999999999999999998765 1 223455567778
Q ss_pred HhccCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcCC---CCcchHHHHHHHHhccCChhHH
Q 002834 363 CAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICR---RDLISWNSMLDAFSESGYNSQF 439 (875)
Q Consensus 363 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a 439 (875)
+.+.|+.+.+..++..+.+.. ++...++..+...|...|++++|.+.|+++.. .+...+..+...+...|++++|
T Consensus 441 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 518 (899)
T TIGR02917 441 YLRSGQFDKALAAAKKLEKKQ--PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDA 518 (899)
T ss_pred HHhcCCHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 889999999999999988754 23333889999999999999999999998743 3556788889999999999999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhh
Q 002834 440 LNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSL 519 (875)
Q Consensus 440 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 519 (875)
.+.|+++...+ +.+..++..+...+.+.|+.+.+...+..+.+.+ +.+...+..++..|.+.|++++|..+++.+
T Consensus 519 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 593 (899)
T TIGR02917 519 IQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN----PQEIEPALALAQYYLGKGQLKKALAILNEA 593 (899)
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----ccchhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999998864 3456678888888999999999999999998875 566777888999999999999999999998
Q ss_pred ccC-C-CcccHHHHHHHhhcCCChHHHHHHHHhhhcCCC---ccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchH
Q 002834 520 LEK-R-NLVTFNPVISGYANCGSADEAFMTFSRIYARDL---TPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTI 594 (875)
Q Consensus 520 ~~~-p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 594 (875)
... | +...|..+...+...|++++|...++++...++ ..+..+..+|.+.|++++|...|+++.+.. +.+..++
T Consensus 594 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 672 (899)
T TIGR02917 594 ADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQ 672 (899)
T ss_pred HHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 764 3 677899999999999999999999999865543 348899999999999999999999998753 3346678
Q ss_pred hcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC--CChhhHHHHHHHHHHcCCh
Q 002834 595 MSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ--KDVVMLTAMIGGYAMHGMG 672 (875)
Q Consensus 595 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~ 672 (875)
..+...+...|+++.+..+++.+....+.+...+..+...+.+.|++++|.+.|+.+.. |+..++..++.++...|++
T Consensus 673 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 752 (899)
T TIGR02917 673 IGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNT 752 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCH
Confidence 88888999999999999999999999888888899999999999999999999998764 6667888899999999999
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHh
Q 002834 673 KAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNR 752 (875)
Q Consensus 673 ~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 752 (875)
++|.+.++++.+. .+.+...+..+...|...|++++|.++|+++.+. .+++...+..++..+...|+ ++|+.++++
T Consensus 753 ~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~ 828 (899)
T TIGR02917 753 AEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEK 828 (899)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHH
Confidence 9999999999986 3556777888888999999999999999999872 33456689999999999999 889999998
Q ss_pred CC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHH
Q 002834 753 MP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMK 820 (875)
Q Consensus 753 ~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 820 (875)
+. ..| ++..+..+..++...|+++.|...++++++.+|.++.++..++++|.+.|++++|.+++++|.
T Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 829 ALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 74 444 457788888999999999999999999999999999999999999999999999999998875
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=2.1e-25 Score=267.83 Aligned_cols=649 Identities=11% Similarity=0.020 Sum_probs=441.3
Q ss_pred HHHHHHHccCCchHHHHhhccCC--CC-CchhHHHHHHHHhcCCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHhhcc
Q 002834 83 ALLNLYAKCGVIDDCYKLFGQVD--NT-DPVTWNILLSGFACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSACARL 159 (875)
Q Consensus 83 ~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~ 159 (875)
..+..+...++.+.|.+.++++. .| ++..+..+...+.+.| +.++|...+++..+.. |+...+..+..
T Consensus 33 ~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g-~~~~A~~~l~~l~~~~---P~~~~~~~~~~----- 103 (1157)
T PRK11447 33 EQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQG-DSDGAQKLLDRLSQLA---PDSNAYRSSRT----- 103 (1157)
T ss_pred HHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhhC---CCChHHHHHHH-----
Confidence 34455666667777777666652 22 4555566666666667 7777777777776644 33322211111
Q ss_pred CCcchhhhHHHHHHHhCCCCCcchhhHHHHHhHhcCChhHHHHHhccCCCCCeeeHH--H--HHHHHHcCCCcchHHHHH
Q 002834 160 GGIFAGKSLHAYVIKFGLERHTLVGNSLTSMYAKRGLVHDAYSVFDSIEDKDVVSWN--A--VISGLSENKVLGDAFRLF 235 (875)
Q Consensus 160 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~--li~~~~~~g~~~~a~~l~ 235 (875)
.+.. ..|+......+...+.+.|++++|.+.|+.+.+.+..... . ........|+.++|.+.|
T Consensus 104 ------------~~~~-~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L 170 (1157)
T PRK11447 104 ------------TMLL-STPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQL 170 (1157)
T ss_pred ------------HHHh-cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHH
Confidence 0111 1233333455566788889999999988887653222211 1 111122458888999999
Q ss_pred HHHHhCCCCCChhhHHhHHHHhccCCccccccchhHHHHHHHHhcccCCchhHhhhHHHHhHhcCChhHHHHHhhhcCCC
Q 002834 236 SWMLTEPIKPNYATILNILPICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAELLFRRMKSR 315 (875)
Q Consensus 236 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 315 (875)
+++.+. .|+ +...+..+...+...|+.++|++.|+++...
T Consensus 171 ~~ll~~--~P~--------------------------------------~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~ 210 (1157)
T PRK11447 171 QRLNAD--YPG--------------------------------------NTGLRNTLALLLFSSGRRDEGFAVLEQMAKS 210 (1157)
T ss_pred HHHHHh--CCC--------------------------------------CHHHHHHHHHHHHccCCHHHHHHHHHHHhhC
Confidence 988875 454 6677788888888899999999999887542
Q ss_pred CccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCCh-hhHHHHHHHHhccCChhhHHHHHHHHHhcCCCCchhhHHHH
Q 002834 316 DLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDS-VTLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNA 394 (875)
Q Consensus 316 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 394 (875)
... +...+...+..+...+ ..|+. ..+...+..+........+...+.........+.. ....
T Consensus 211 ~~~-------------~~~aa~~~~~~l~~~~-~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~--~~~~ 274 (1157)
T PRK11447 211 PAG-------------RDAAAQLWYGQIKDMP-VSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF--RARA 274 (1157)
T ss_pred CCc-------------hHHHHHHHHHHHhccC-CChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch--HHHH
Confidence 211 1111222222222221 11111 11222222222222333444444443333222221 2234
Q ss_pred HHHHHhcCCChhHHHHHHHhcCC---CCcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCC-hhhHHH----------
Q 002834 395 LVSFYAKCSDMEAAYRTFLMICR---RDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPD-SITILT---------- 460 (875)
Q Consensus 395 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~---------- 460 (875)
....+...|++++|...|++... .+...+..+...+.+.|++++|+..|++.++...... ...+..
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 45667778888888888887633 3566788888888888899999988888876532211 111111
Q ss_pred --HHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-C-CcccHHHHHHHhh
Q 002834 461 --IIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEK-R-NLVTFNPVISGYA 536 (875)
Q Consensus 461 --ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~l~~~~~ 536 (875)
.-..+...|+++.|...++.+.+.. +.+...+..+...+...|++++|++.|++.... | +...+..+...|.
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~----P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD----NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR 430 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 1234567788889999998888875 455667778888999999999999999988764 4 4455666666664
Q ss_pred cCCChHHHHHHHHhhhcCC------------CccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCC-cchHhcHHHHhhc
Q 002834 537 NCGSADEAFMTFSRIYARD------------LTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPD-AVTIMSLLPVCSQ 603 (875)
Q Consensus 537 ~~~~~~~A~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~ 603 (875)
.++.++|+..++.+.... ...+..+...+...|++++|++.|++..+. .|+ ...+..+...+..
T Consensus 431 -~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~ 507 (1157)
T PRK11447 431 -QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQ 507 (1157)
T ss_pred -hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 457888988887764332 122566778888999999999999998875 454 3456677778899
Q ss_pred ccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCCC----Ch---------hhHHHHHHHHHHcC
Q 002834 604 MASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQK----DV---------VMLTAMIGGYAMHG 670 (875)
Q Consensus 604 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~---------~~~~~li~~~~~~g 670 (875)
.|+.++|...++.+.+..+.++.....+...+.+.|+.++|...++.+... +. ..+..+...+...|
T Consensus 508 ~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 508 AGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 999999999999999877777777777777788899999999999988642 11 11234567788999
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHH
Q 002834 671 MGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSL 749 (875)
Q Consensus 671 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 749 (875)
+.++|+.+++. .+++...+..+...+.+.|+.++|++.|+++.+ ..|+ ...+..++.+|...|++++|++.
T Consensus 588 ~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~---~~P~~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 588 KEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT---REPGNADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred CHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999882 355556677778899999999999999999987 4565 55888999999999999999999
Q ss_pred HHhCC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCc------cHHHHHHHHHhcCCchhHHHHHHHH-H
Q 002834 750 VNRMP-VEAD-CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIG------NYVVMSNLYAADARWDGVVEIRKLM-K 820 (875)
Q Consensus 750 ~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~-~ 820 (875)
++... ..|+ ...+..+..++...|+.++|.+.++++++..|+++. .+..++.++...|++++|++.++.. .
T Consensus 660 l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 660 LAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99886 4554 466777888888999999999999999999877654 5566799999999999999975544 4
Q ss_pred hCCC
Q 002834 821 TRDL 824 (875)
Q Consensus 821 ~~~~ 824 (875)
..|+
T Consensus 740 ~~~~ 743 (1157)
T PRK11447 740 ASGI 743 (1157)
T ss_pred hcCC
Confidence 4444
No 10
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=1.7e-23 Score=238.45 Aligned_cols=668 Identities=10% Similarity=-0.033 Sum_probs=393.0
Q ss_pred hHHHHHHHHh--hcCChhhHHHHHHHHhhcCCCCCCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCCchhhhHHH
Q 002834 8 SWITIINGFC--RDGLHKEALSLFAHELQSSPSVRHNHQLFSAVLKSCTSLADILLGKALHGYVTKLGHISCQAVSKALL 85 (875)
Q Consensus 8 ~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 85 (875)
+|.-++.+.. ..|++++|+..|+++++..|.. ..++..|.+++...|..++|....++.++.. |+...|..++
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n---~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~L 118 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQQVPDN---IPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSL 118 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHH
Confidence 3444444444 4499999999999999976543 5678999999999999999999999999874 4444444434
Q ss_pred HHHHccCCchHHHHhhccCCC--CC-chhHHHHHHH--------HhcCCCChhHHHHHHHHhHhcCCCCCCcchHHHH-H
Q 002834 86 NLYAKCGVIDDCYKLFGQVDN--TD-PVTWNILLSG--------FACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIV-L 153 (875)
Q Consensus 86 ~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~--------~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l-l 153 (875)
..+ ++.++|..+++++.. |+ ...+..+... |.+ .++|.+.++ .+... ..|++.+.... .
T Consensus 119 a~i---~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q----~eqAl~AL~-lr~~~-~~~~~~vL~L~~~ 189 (987)
T PRK09782 119 AAI---PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQ----LPVARAQLN-DATFA-ASPEGKTLRTDLL 189 (987)
T ss_pred HHh---ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhh----HHHHHHHHH-HhhhC-CCCCcHHHHHHHH
Confidence 333 889999999999843 32 3333333333 544 456666665 33333 34455555555 8
Q ss_pred HHhhccCCcchhhhHHHHHHHhCCCCCcchhhHHHHHhHh-cCChhHHHHHhccCCCCCeeeHHHHHHHHHcCCCcchHH
Q 002834 154 SACARLGGIFAGKSLHAYVIKFGLERHTLVGNSLTSMYAK-RGLVHDAYSVFDSIEDKDVVSWNAVISGLSENKVLGDAF 232 (875)
Q Consensus 154 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 232 (875)
+.+...++++++..++..+.+.+ ..+......|-.+|.. .++ +.+..++....+.+...+..+...+.+.|+.++|.
T Consensus 190 rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~ 267 (987)
T PRK09782 190 QRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQ 267 (987)
T ss_pred HHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999999997 3445556777778888 477 88999987655568888999999999999999999
Q ss_pred HHHHHHHhCCCC-CChhhHHhHHHHhccCCccccccchhHHHHHHHHhcccCCchhHhhhHHHHhHhcCChhHHHHHhhh
Q 002834 233 RLFSWMLTEPIK-PNYATILNILPICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAELLFRR 311 (875)
Q Consensus 233 ~l~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 311 (875)
++++++...-.. |...++...+........-......+++... -....-.++..+.+.++++.|.++...
T Consensus 268 ~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (987)
T PRK09782 268 HYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADN---------RQYVVGATLPVLLKEGQYDAAQKLLAT 338 (987)
T ss_pred HHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHH---------HHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 999998765433 6666666665544433200000001111000 122334457788888888877777442
Q ss_pred cCCCCccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHhc-CC-CCchh
Q 002834 312 MKSRDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIHGYFLRH-PY-LEEDA 389 (875)
Q Consensus 312 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~ 389 (875)
-+ .+. ..-.-..+....+...++...+..|.+.. +-+......+--...+.|+.++|.+++...... +- ..+..
T Consensus 339 ~~-~~~-~~~~r~~~~~~~~~~~~~~~~~~~~y~~~--~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 414 (987)
T PRK09782 339 LP-ANE-MLEERYAVSVATRNKAEALRLARLLYQQE--PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQT 414 (987)
T ss_pred CC-cch-HHHHHHhhccccCchhHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHH
Confidence 22 222 11111122233466677777777776652 123333333333344566666666666665552 11 11122
Q ss_pred hHHHHHHHHHhcCCChhHHHHHHHhcCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccC
Q 002834 390 AVGNALVSFYAKCSDMEAAYRTFLMICRRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVL 469 (875)
Q Consensus 390 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 469 (875)
....|+..|.+.+.+....+...-....+...- +.-.|+..++...+......
T Consensus 415 -l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~a-------------------- 467 (987)
T PRK09782 415 -LMARLASLLESHPYLATPAKVAILSKPLPLAEQ------RQWQSQLPGIADNCPAIVRL-------------------- 467 (987)
T ss_pred -HHHHHHHHHHhCCcccchHHHHHhccccccchh------HHHHhhhhhhhhhHHHHHHh--------------------
Confidence 344555666555553333322222111111111 11111221111111111110
Q ss_pred chhhHHHHHHHHHHhcCCCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHhhcc-CCCcccHHHHHHHhhcCCChHHHHH
Q 002834 470 REGMVKETHGYLIKTGLLLGDT--EHNIGNAILDAYAKCRNIKYAFNVFQSLLE-KRNLVTFNPVISGYANCGSADEAFM 546 (875)
Q Consensus 470 ~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~A~~ 546 (875)
... .++ +...+..+..++.. ++.++|...+.+... .|+......+...+...|++++|..
T Consensus 468 ------------l~~----~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~ 530 (987)
T PRK09782 468 ------------LGD----MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALA 530 (987)
T ss_pred ------------ccc----CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHH
Confidence 000 022 33444555555544 566666665554443 2442222222222323444444444
Q ss_pred HHHhhhcCCCc--cHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCC
Q 002834 547 TFSRIYARDLT--PWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDG 624 (875)
Q Consensus 547 ~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~ 624 (875)
.|+++....+. .+..+...+.+.|+.++|...+++..+.. |+.
T Consensus 531 ~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~--------------------------------- 575 (987)
T PRK09782 531 AWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGD--------------------------------- 575 (987)
T ss_pred HHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--Ccc---------------------------------
Confidence 44433221111 12333333344444444444444443321 211
Q ss_pred chHHHHHHHHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhc
Q 002834 625 VRLNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHA 704 (875)
Q Consensus 625 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~ 704 (875)
...+..+...+...|++++|+..+++..+ ..|+...+..+..++.+.
T Consensus 576 -------------------------------~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~l 622 (987)
T PRK09782 576 -------------------------------NALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQR 622 (987)
T ss_pred -------------------------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHC
Confidence 11111222233345788888888888777 456666777777788888
Q ss_pred CcHHHHHHHHHHhHHHhCCCCCh-hHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHH
Q 002834 705 GLVDEGLEIFRSIEKVQGIKPTP-EQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVV 781 (875)
Q Consensus 705 g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 781 (875)
|+.++|...+++..+ ..|+. ..+..+..++...|++++|++.+++.. ..| ++..+..+..++...|+++.|+..
T Consensus 623 G~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~ 699 (987)
T PRK09782 623 HNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHY 699 (987)
T ss_pred CCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 888888888888766 45653 477777778888888888888887764 445 457777888888888888888888
Q ss_pred HHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHH
Q 002834 782 ANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLM 819 (875)
Q Consensus 782 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 819 (875)
++++++++|+++.+....+++..+..+++.|.+-+++.
T Consensus 700 l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~ 737 (987)
T PRK09782 700 ARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRR 737 (987)
T ss_pred HHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888865543
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=8.6e-24 Score=253.92 Aligned_cols=666 Identities=10% Similarity=-0.018 Sum_probs=393.7
Q ss_pred HHHHHHHhcccCchHHHHHHHHHHHHhcCCCCchhhhHHHHHHHccCCchHHHHhhccCCC--CCchh------------
Q 002834 46 FSAVLKSCTSLADILLGKALHGYVTKLGHISCQAVSKALLNLYAKCGVIDDCYKLFGQVDN--TDPVT------------ 111 (875)
Q Consensus 46 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~------------ 111 (875)
+....+.+-..++.+.|.+.+.++.... +.++.++..+...+.+.|+.++|.+.+++..+ |+...
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~ 109 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLST 109 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcC
Confidence 4444555666777777777777776653 33566777777777888888888887777643 22211
Q ss_pred -----HHHHHHHHhcCCCChhHHHHHHHHhHhcCCCCCCcch-HHHHHHHhhccCCcchhhhHHHHHHHhCCCCCcchhh
Q 002834 112 -----WNILLSGFACSHVDDARVMNLFYNMHVRDQPKPNSVT-VAIVLSACARLGGIFAGKSLHAYVIKFGLERHTLVGN 185 (875)
Q Consensus 112 -----~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 185 (875)
.-.+...+...| ++++|+..|+.+.+.+ +|+... ...+.......++.++|...++.+.+.. +.+...+.
T Consensus 110 ~~~~~~l~~A~ll~~~g-~~~eA~~~~~~~l~~~--p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~ 185 (1157)
T PRK11447 110 PEGRQALQQARLLATTG-RTEEALASYDKLFNGA--PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRN 185 (1157)
T ss_pred CchhhHHHHHHHHHhCC-CHHHHHHHHHHHccCC--CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 122233566778 8999999999887765 444321 1112222234588888888888888875 44566777
Q ss_pred HHHHHhHhcCChhHHHHHhccCCCCCeeeH---HHHHHHHHcCCCcchHHHHHHHHHhCCCCCChhhHHhHHHHhccCCc
Q 002834 186 SLTSMYAKRGLVHDAYSVFDSIEDKDVVSW---NAVISGLSENKVLGDAFRLFSWMLTEPIKPNYATILNILPICASLDE 262 (875)
Q Consensus 186 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 262 (875)
.+...+...|+.++|++.|+++........ ..........+....+...+...... .|+
T Consensus 186 ~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~--~p~---------------- 247 (1157)
T PRK11447 186 TLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQV--FSD---------------- 247 (1157)
T ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHH--CCC----------------
Confidence 888888888999999888888754221100 00001111112222233333222211 111
Q ss_pred cccccchhHHHHHHHHhcccCCchhHhhhHHHHhHhcCChhHHHHHhhhcCC--C-CccchHHHHHHHHcCCCHHHHHHH
Q 002834 263 DVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAELLFRRMKS--R-DLVSWNAIIAGYASNDEWLKALNL 339 (875)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~ 339 (875)
......+...+........ .|+. ........+...|++++|+..|++..+ | +...+..+...+.+.|++++|+..
T Consensus 248 ~~~~~~A~~~L~~~~~~~~-dp~~-~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~ 325 (1157)
T PRK11447 248 GDSVAAARSQLAEQQKQLA-DPAF-RARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQ 325 (1157)
T ss_pred chHHHHHHHHHHHHHHhcc-Ccch-HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 0011111122211111111 1111 112334556667777777777776653 3 455666777777777777777777
Q ss_pred HHHHHHcCCCCCChh---hHHHHHHHHhccCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcC
Q 002834 340 FCELITKEMIWPDSV---TLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMIC 416 (875)
Q Consensus 340 ~~~m~~~~~~~pd~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 416 (875)
|++..+.. |+.. .+..++... .......+...+.+.|++++|...|+++.
T Consensus 326 l~~Al~~~---p~~~~~~~~~~ll~~~------------------------~~~~~~~~g~~~~~~g~~~eA~~~~~~Al 378 (1157)
T PRK11447 326 FEKALALD---PHSSNRDKWESLLKVN------------------------RYWLLIQQGDAALKANNLAQAERLYQQAR 378 (1157)
T ss_pred HHHHHHhC---CCccchhHHHHHHHhh------------------------hHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77776644 3321 111111000 00011122334445555666666555542
Q ss_pred C---CCcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCCh-hhHHHHHHHhhccCchhhHHHHHHHHHHhcCC-----
Q 002834 417 R---RDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDS-ITILTIIHFCTTVLREGMVKETHGYLIKTGLL----- 487 (875)
Q Consensus 417 ~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----- 487 (875)
. .+...+..+...+...|++++|++.|++.++.. |+. ..+..+...+ ..++.+++..+++.+......
T Consensus 379 ~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~-~~~~~~~A~~~l~~l~~~~~~~~~~~ 455 (1157)
T PRK11447 379 QVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLY-RQQSPEKALAFIASLSASQRRSIDDI 455 (1157)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH-HhcCHHHHHHHHHhCCHHHHHHHHHH
Confidence 2 233444555555666666666666666655432 222 2222222222 223344444444332211000
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-C-CcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCcc---HHHH
Q 002834 488 LGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEK-R-NLVTFNPVISGYANCGSADEAFMTFSRIYARDLTP---WNLM 562 (875)
Q Consensus 488 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l 562 (875)
........+..+...+...|++++|.+.|++.... | +...+..+...|.+.|++++|...++++...++.. +..+
T Consensus 456 ~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~ 535 (1157)
T PRK11447 456 ERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAY 535 (1157)
T ss_pred HHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 00011123445666777888888888888877664 4 44566677778888888888888888875543332 4445
Q ss_pred HHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHH
Q 002834 563 IRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIF 642 (875)
Q Consensus 563 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 642 (875)
...+.+.+++++|+..++.+......++...+.. .+ .......+...+...|+.+
T Consensus 536 al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~-------------------~l------~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 536 GLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQ-------------------RL------QSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHH-------------------HH------hhhHHHHHHHHHHHCCCHH
Confidence 5556778888888888776543221111100000 00 0011234567788899999
Q ss_pred HHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhC
Q 002834 643 SASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQG 722 (875)
Q Consensus 643 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 722 (875)
+|..+++..+ .+...+..+...+...|+.++|+..|++..+.. +.+...+..+...+...|+.++|.+.++.+.+
T Consensus 591 eA~~~l~~~p-~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~--- 665 (1157)
T PRK11447 591 EAEALLRQQP-PSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPA--- 665 (1157)
T ss_pred HHHHHHHhCC-CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc---
Confidence 9999998433 455677888999999999999999999999852 33466788888899999999999999998765
Q ss_pred CCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-------CHHHHHHHHHHHHhcCChhHHHHHHHHHhc---ccC
Q 002834 723 IKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-------DCNVWGTLLGACRIHHEVELGRVVANRLFE---MEA 790 (875)
Q Consensus 723 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~p 790 (875)
..|+ ...+..++.++...|++++|.++++++. ..| +...+..+...+...|+.++|+..+++++. +.|
T Consensus 666 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 666 TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 4555 4467778899999999999999999974 222 124556667788899999999999999985 456
Q ss_pred CCCccH
Q 002834 791 DNIGNY 796 (875)
Q Consensus 791 ~~~~~~ 796 (875)
..|...
T Consensus 746 ~~p~~~ 751 (1157)
T PRK11447 746 TRPQDN 751 (1157)
T ss_pred CCCCCc
Confidence 555543
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=9.7e-23 Score=232.27 Aligned_cols=623 Identities=11% Similarity=0.011 Sum_probs=374.1
Q ss_pred cCCchHHHHhhccCCC--C-CchhHHHHHHHHhcCCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHhhccCCcchhhh
Q 002834 91 CGVIDDCYKLFGQVDN--T-DPVTWNILLSGFACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSACARLGGIFAGKS 167 (875)
Q Consensus 91 ~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 167 (875)
.|++++|...|+...+ | ++..+..+.+.|...| +.++|+..+++..+.. |+...|..++..+ ++++.|..
T Consensus 57 ~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g-~~~~A~~~~~kAv~ld---P~n~~~~~~La~i---~~~~kA~~ 129 (987)
T PRK09782 57 NNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFG-HDDRARLLLEDQLKRH---PGDARLERSLAAI---PVEVKSVT 129 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcC---cccHHHHHHHHHh---ccChhHHH
Confidence 4777777777776532 2 3455667777777777 7777777777777754 4444444444222 77777777
Q ss_pred HHHHHHHhCCCCCcchhhHHHHH--------hHhcCChhHHHHHhccCCCCC--eeeHHHH-HHHHHcCCCcchHHHHHH
Q 002834 168 LHAYVIKFGLERHTLVGNSLTSM--------YAKRGLVHDAYSVFDSIEDKD--VVSWNAV-ISGLSENKVLGDAFRLFS 236 (875)
Q Consensus 168 ~~~~~~~~g~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~~~~~~--~~~~~~l-i~~~~~~g~~~~a~~l~~ 236 (875)
+++++.+.. +-+..++..+... |.+.+....+++ .+...|+ ....... ...|.+.|++++|++++.
T Consensus 130 ~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~ 206 (987)
T PRK09782 130 TVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYN 206 (987)
T ss_pred HHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 777777765 3334455555554 666666666665 3333343 3333333 678888888888999998
Q ss_pred HHHhCCCCCChhhHHhHHHHhccCCccccccchhHHHHHHHHhcccCCchhHhhhHHHHhHh-cCChhHHHHHhhhcCCC
Q 002834 237 WMLTEPIKPNYATILNILPICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLR-FGRTEEAELLFRRMKSR 315 (875)
Q Consensus 237 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~ 315 (875)
++.+.+.. +..-...|...|.. .++ +.+..+++.....
T Consensus 207 ~L~k~~pl----------------------------------------~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~ 245 (987)
T PRK09782 207 EARQQNTL----------------------------------------SAAERRQWFDVLLAGQLD-DRLLALQSQGIFT 245 (987)
T ss_pred HHHhcCCC----------------------------------------CHHHHHHHHHHHHHhhCH-HHHHHHhchhccc
Confidence 88887432 33334444455555 355 7777776654445
Q ss_pred CccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChh-hHHHHHHHHHhcCCCCchhhHHHH
Q 002834 316 DLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLK-VGKEIHGYFLRHPYLEEDAAVGNA 394 (875)
Q Consensus 316 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~ 394 (875)
|...+..+...|.+.|+.++|.++++++.....-.|+..++.-++.- .+... .+..-+.. ...++.....-.
T Consensus 246 d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r---~~~~~~~~~~~~~~----~~~~~~~~~~~~ 318 (987)
T PRK09782 246 DPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSK---YSANPVQALANYTV----QFADNRQYVVGA 318 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHh---ccCchhhhccchhh----hhHHHHHHHHHH
Confidence 67777788888888888888888888876654223555555444332 22221 01111100 111111113345
Q ss_pred HHHHHhcCCChhHHHHHHHhcCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCC-ChhhHHHHHHHhhccCchhh
Q 002834 395 LVSFYAKCSDMEAAYRTFLMICRRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRP-DSITILTIIHFCTTVLREGM 473 (875)
Q Consensus 395 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~ 473 (875)
++..+.+.+.++.+.++.. ....+. ..-.-..+....+...++.+.++.|.+.. | +.....-+--.....|+.+.
T Consensus 319 ~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~r~~~~~~~~~~~~~~~~~~~~y~~~--~~~~~~l~q~~~~~~~~~~~~~ 394 (987)
T PRK09782 319 TLPVLLKEGQYDAAQKLLA-TLPANE-MLEERYAVSVATRNKAEALRLARLLYQQE--PANLTRLDQLTWQLMQNGQSRE 394 (987)
T ss_pred HHHHHHhccHHHHHHHHhc-CCCcch-HHHHHHhhccccCchhHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcccHHH
Confidence 5788888888887776633 222233 21111112223456666666666666542 1 11111111112234445555
Q ss_pred HHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcccHHHHHHHhhcCCChHHHHHHHHhhhc
Q 002834 474 VKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFMTFSRIYA 553 (875)
Q Consensus 474 a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 553 (875)
|.+++........ ....+.....-++..|.+.+......+...-...- +...-..+...+ -....+...+.....
T Consensus 395 a~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~al~ 469 (987)
T PRK09782 395 AADLLLQRYPFQG-DARLSQTLMARLASLLESHPYLATPAKVAILSKPL-PLAEQRQWQSQL---PGIADNCPAIVRLLG 469 (987)
T ss_pred HHHHHHHhcCCCc-ccccCHHHHHHHHHHHHhCCcccchHHHHHhcccc-ccchhHHHHhhh---hhhhhhHHHHHHhcc
Confidence 5555555443210 00123333345555555555432222222111100 111111111100 011122222222222
Q ss_pred C-----CCccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHH
Q 002834 554 R-----DLTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLN 628 (875)
Q Consensus 554 ~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 628 (875)
. +...|..+..++.. +++++|+..+.+.... .|+.. ..
T Consensus 470 ~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~----------------------------------~~ 512 (987)
T PRK09782 470 DMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAW----------------------------------QH 512 (987)
T ss_pred cCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchH----------------------------------HH
Confidence 2 12224555555444 4555555555444432 23311 12
Q ss_pred HHHHHHhHhcCCHHHHHHHhccCCC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHHhhcC
Q 002834 629 GALLHLYAKCGSIFSASKIFQCHPQ--KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHV-VITAVLSACSHAG 705 (875)
Q Consensus 629 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~a~~~~g 705 (875)
..+...+...|++++|...|+++.. ++...+..+...+...|+.++|+..+++..+.. |+.. .+..+...+...|
T Consensus 513 L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~G 590 (987)
T PRK09782 513 RAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPG 590 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCC
Confidence 2334455678999999999987654 455567778888999999999999999999853 4443 3333344555679
Q ss_pred cHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHH
Q 002834 706 LVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP-VEAD-CNVWGTLLGACRIHHEVELGRVVAN 783 (875)
Q Consensus 706 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~ 783 (875)
++++|...+++..+ +.|+...|..++.++.+.|++++|+..+++.. ..|+ ...+..+..++...|+.+.|+..++
T Consensus 591 r~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~ 667 (987)
T PRK09782 591 QPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLE 667 (987)
T ss_pred CHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999977 67887899999999999999999999999985 6664 5778888888999999999999999
Q ss_pred HHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 002834 784 RLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTR 822 (875)
Q Consensus 784 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 822 (875)
++++++|+++..+..++++|...|++++|+..+++..+.
T Consensus 668 ~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 668 RAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999988777653
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=3.2e-22 Score=200.16 Aligned_cols=441 Identities=13% Similarity=0.115 Sum_probs=329.5
Q ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHH-HHhccCChhhHHHHHHHHHhcCCCCchhhHHHHHHHH
Q 002834 320 WNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLP-ACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSF 398 (875)
Q Consensus 320 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 398 (875)
...+..-..+.|++.+|.+.-...-+++ |+..--..++. .+.+..+.+...+--....+. .+.-..+|..+.+.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d---~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~--~~q~ae~ysn~aN~ 125 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED---PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK--NPQGAEAYSNLANI 125 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC---CCcccceeeehhhhhcccchhhhhhhhhhhhhc--cchHHHHHHHHHHH
Confidence 3445555667788888877766554443 33222222222 222222222211111111111 11112244555555
Q ss_pred HhcCCChhHHHHHHHhcCC---CCcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchhhHH
Q 002834 399 YAKCSDMEAAYRTFLMICR---RDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVK 475 (875)
Q Consensus 399 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 475 (875)
+-..|++++|+..++.+.+ ..+..|-.+..++...|+.+.|...|.+.++. .|+.
T Consensus 126 ~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l-------------------- 183 (966)
T KOG4626|consen 126 LKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDL-------------------- 183 (966)
T ss_pred HHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccch--------------------
Confidence 5555555555555555432 23345555555555555555555555554432 2222
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcc-CC-CcccHHHHHHHhhcCCChHHHHHHHHhhhc
Q 002834 476 ETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLE-KR-NLVTFNPVISGYANCGSADEAFMTFSRIYA 553 (875)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 553 (875)
....+.+-......|++.+|...+.+... .| -.+.|+.|...+..+|+...|+..|++..+
T Consensus 184 -----------------~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk 246 (966)
T KOG4626|consen 184 -----------------YCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK 246 (966)
T ss_pred -----------------hhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc
Confidence 22233444556667899999888877665 35 567999999999999999999999999988
Q ss_pred CCCcc---HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCC-cchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHH
Q 002834 554 RDLTP---WNLMIRVYAENDFPNQALSLFLKLQAQGMKPD-AVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNG 629 (875)
Q Consensus 554 ~~~~~---~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 629 (875)
.++.. |..|.++|...+.+++|+..|.+.... +|+ .+.+..+...|...|.++.|...++..+...+.-+..++
T Consensus 247 ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~ 324 (966)
T KOG4626|consen 247 LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYN 324 (966)
T ss_pred CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHh
Confidence 77665 999999999999999999999987753 665 456777777889999999999999999999999999999
Q ss_pred HHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhhcC
Q 002834 630 ALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPD-HVVITAVLSACSHAG 705 (875)
Q Consensus 630 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g 705 (875)
.|..++-..|++.+|.+.|.+... ....+.+.|...|...|.+++|..+|....+ +.|. ...++.|...|-++|
T Consensus 325 NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqg 402 (966)
T KOG4626|consen 325 NLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQG 402 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcc
Confidence 999999999999999999998775 3456889999999999999999999999988 6676 456888999999999
Q ss_pred cHHHHHHHHHHhHHHhCCCCChh-HHHHHHHHhhcCCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChhHHHHHH
Q 002834 706 LVDEGLEIFRSIEKVQGIKPTPE-QYASLVDLLARGGQISDAYSLVNRMP-VEAD-CNVWGTLLGACRIHHEVELGRVVA 782 (875)
Q Consensus 706 ~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~ 782 (875)
++++|+..+++..+ ++|+.. .|+.|+..|-..|+.+.|++.+.+.. ..|. ....++|..++...||+.+|+..|
T Consensus 403 nl~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY 479 (966)
T KOG4626|consen 403 NLDDAIMCYKEALR---IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSY 479 (966)
T ss_pred cHHHHHHHHHHHHh---cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHH
Confidence 99999999999977 999965 99999999999999999999999885 6775 488999999999999999999999
Q ss_pred HHHhcccCCCCccHHHHHHHHHhcCCchh
Q 002834 783 NRLFEMEADNIGNYVVMSNLYAADARWDG 811 (875)
Q Consensus 783 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 811 (875)
+.+++++|+.|.+|-.+...+.--.+|.+
T Consensus 480 ~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 480 RTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 99999999999999988888777777776
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.89 E-value=4.1e-18 Score=180.81 Aligned_cols=592 Identities=13% Similarity=0.088 Sum_probs=340.4
Q ss_pred hhHHHHHHHHhHhcCCCCCCcchHHHHHHHhh--ccCCcchhhhHHHHHHHhC--CCCCcchhhHHHHHhHhcCChhHHH
Q 002834 126 DARVMNLFYNMHVRDQPKPNSVTVAIVLSACA--RLGGIFAGKSLHAYVIKFG--LERHTLVGNSLTSMYAKRGLVHDAY 201 (875)
Q Consensus 126 ~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~ 201 (875)
.+.|...|....+.. ++|. ...+.+||. ..+++..+..+|..++... ..||+.+. +-.++.+.|+.+.|+
T Consensus 146 ~~~A~a~F~~Vl~~s--p~Ni--l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIg--ig~Cf~kl~~~~~a~ 219 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS--PDNI--LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIG--IGHCFWKLGMSEKAL 219 (1018)
T ss_pred HHHHHHHHHHHHhhC--Ccch--HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccch--hhhHHHhccchhhHH
Confidence 578888888887765 4444 334455554 6678999999998866554 45555433 336677889999999
Q ss_pred HHhccCCCCCeeeHHHHHHHHH------cCCCcchHHHHHHHHHhCCCCCChhhHHhHHHHhccCCccccccchhHHHHH
Q 002834 202 SVFDSIEDKDVVSWNAVISGLS------ENKVLGDAFRLFSWMLTEPIKPNYATILNILPICASLDEDVGYFFGREIHCY 275 (875)
Q Consensus 202 ~~~~~~~~~~~~~~~~li~~~~------~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~ 275 (875)
..|.+..+-|+..-++++.-.. ....+..++.++...-.. .|+
T Consensus 220 ~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~--n~~----------------------------- 268 (1018)
T KOG2002|consen 220 LAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE--NNE----------------------------- 268 (1018)
T ss_pred HHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh--cCC-----------------------------
Confidence 9998888766655555543211 111222233333222211 111
Q ss_pred HHHhcccCCchhHhhhHHHHhHhcCChhHHHHHhhhcCCCC------ccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCC
Q 002834 276 VLRRAELIADVSVCNALVSFYLRFGRTEEAELLFRRMKSRD------LVSWNAIIAGYASNDEWLKALNLFCELITKEMI 349 (875)
Q Consensus 276 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 349 (875)
++.+.+.|.+.|.-.|++..+..+...+.... ..+|--+.++|-..|++++|...|-+..+..
T Consensus 269 ---------nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~-- 337 (1018)
T KOG2002|consen 269 ---------NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD-- 337 (1018)
T ss_pred ---------CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--
Confidence 66777777788888888888777777665422 2245566777777888888888877766543
Q ss_pred CCChhhHHHHHHHHhccCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcCC--C-CcchHHHH
Q 002834 350 WPDSVTLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICR--R-DLISWNSM 426 (875)
Q Consensus 350 ~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l 426 (875)
||.+++ .+-.|.++|.+.|+++.+...|+.+.. | +..+...|
T Consensus 338 -~d~~~l----------------------------------~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iL 382 (1018)
T KOG2002|consen 338 -NDNFVL----------------------------------PLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKIL 382 (1018)
T ss_pred -CCCccc----------------------------------cccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 555443 334566666667777777666666633 2 33444445
Q ss_pred HHHHhccC----ChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHH----HHHhcCCCCCCchhHHHH
Q 002834 427 LDAFSESG----YNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGY----LIKTGLLLGDTEHNIGNA 498 (875)
Q Consensus 427 i~~~~~~g----~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~~~~ 498 (875)
...|...+ ..+.|..++.+....- ..|...|..+-..+-.. ++.....++.. +...+- .+.+.+.|.
T Consensus 383 G~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~---~ip~E~LNN 457 (1018)
T KOG2002|consen 383 GCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGK---QIPPEVLNN 457 (1018)
T ss_pred HhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCC---CCCHHHHHh
Confidence 55555443 3344555554444332 22333444433333332 22222443333 333444 566677788
Q ss_pred HHHHHHhcCCHHHHHHHHHhhccC------CCcc------cHHHHHHHhhcCCChHHHHHHHHhhhcCCCcc---HHHHH
Q 002834 499 ILDAYAKCRNIKYAFNVFQSLLEK------RNLV------TFNPVISGYANCGSADEAFMTFSRIYARDLTP---WNLMI 563 (875)
Q Consensus 499 li~~~~~~g~~~~A~~~~~~~~~~------p~~~------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~ 563 (875)
+...+...|++++|...|.....+ ++.. +--.+...+-..++++.|.+.+..+.+..+.- |.-++
T Consensus 458 vaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~ 537 (1018)
T KOG2002|consen 458 VASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLG 537 (1018)
T ss_pred HHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhh
Confidence 888888888888888888776553 2221 11123334445567777777777776655544 33333
Q ss_pred HHHHHcCCchHHHHHHHHHHHC-CCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCC--CchHHHHHHHHhHh---
Q 002834 564 RVYAENDFPNQALSLFLKLQAQ-GMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFD--GVRLNGALLHLYAK--- 637 (875)
Q Consensus 564 ~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~--- 637 (875)
-.-...+...+|...++..... ...|+..++ +-..+.....+..+..-+..+.+.-.. +....-+|.+.|..
T Consensus 538 ~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl--~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~ 615 (1018)
T KOG2002|consen 538 CMARDKNNLYEASLLLKDALNIDSSNPNARSL--LGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALH 615 (1018)
T ss_pred HHHHhccCcHHHHHHHHHHHhcccCCcHHHHH--HHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhc
Confidence 2223345666777777765543 233433332 222344444455555544444443222 44444444444332
Q ss_pred ---------cCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcC
Q 002834 638 ---------CGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAG 705 (875)
Q Consensus 638 ---------~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g 705 (875)
.+..++|+++|.++.. .|..+-|.+.-+++..|++.+|..+|.+..+.. .-+..+|..+.++|...|
T Consensus 616 ~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~ 694 (1018)
T KOG2002|consen 616 NPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQG 694 (1018)
T ss_pred ccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHH
Confidence 3446677777776654 345566667777777777777777777777753 234456666777777777
Q ss_pred cHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHH
Q 002834 706 LVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP-VEAD-CNVWGTLLGACRIHHEVELGRVVAN 783 (875)
Q Consensus 706 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~ 783 (875)
++-.|++.|+...+.+.-.-+.....+|+.++.+.|++.+|.+...... ..|. +....+++-. ..+..+
T Consensus 695 qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v---------~kkla~ 765 (1018)
T KOG2002|consen 695 QYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALV---------LKKLAE 765 (1018)
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHH---------HHHHHH
Confidence 7777777777777766655566677777777777777777777665553 3332 2222122111 122333
Q ss_pred HHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 002834 784 RLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTRD 823 (875)
Q Consensus 784 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 823 (875)
.+++..+ -++-.+....+..++|.+++..|...+
T Consensus 766 s~lr~~k------~t~eev~~a~~~le~a~r~F~~ls~~~ 799 (1018)
T KOG2002|consen 766 SILRLEK------RTLEEVLEAVKELEEARRLFTELSKNG 799 (1018)
T ss_pred HHHhccc------ccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3333333 233345555677788888888887654
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=2.8e-19 Score=179.37 Aligned_cols=368 Identities=15% Similarity=0.196 Sum_probs=252.5
Q ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCC-hhhHHHHHHHHhccCChhhHHHHHHHHHhcCCCCchhhHHHHHHH
Q 002834 319 SWNAIIAGYASNDEWLKALNLFCELITKEMIWPD-SVTLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVS 397 (875)
Q Consensus 319 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 397 (875)
+|+.+.+.+-..|++++|+.+|+.+.+.. |+ ...|..+-.++...|+.+.|.+.+...++.+ |+..-+.+-+..
T Consensus 118 ~ysn~aN~~kerg~~~~al~~y~~aiel~---p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgn 192 (966)
T KOG4626|consen 118 AYSNLANILKERGQLQDALALYRAAIELK---PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHhcC---chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhH
Confidence 45555555555555555555555555532 32 2344444444444455554444444444332 222213344445
Q ss_pred HHhcCCChhHHHHHHHhcCCC---CcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchhhH
Q 002834 398 FYAKCSDMEAAYRTFLMICRR---DLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMV 474 (875)
Q Consensus 398 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 474 (875)
.....|++.+|...+.+..+. =.+.|+.|...+-.+|+...|+..|++.+...
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld------------------------ 248 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD------------------------ 248 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC------------------------
Confidence 555567777777666655332 23567777777778888888888877776532
Q ss_pred HHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcc-CC-CcccHHHHHHHhhcCCChHHHHHHHHhhh
Q 002834 475 KETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLE-KR-NLVTFNPVISGYANCGSADEAFMTFSRIY 552 (875)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 552 (875)
+.-...|-.|...|...+.+++|...+.+... +| ..+.+..+...|...|.++.|+..+++..
T Consensus 249 ---------------P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral 313 (966)
T KOG4626|consen 249 ---------------PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRAL 313 (966)
T ss_pred ---------------CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHH
Confidence 33445567777788888888888888876655 45 55677777777866666666666666654
Q ss_pred cCCCcc---HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHH
Q 002834 553 ARDLTP---WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNG 629 (875)
Q Consensus 553 ~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 629 (875)
+.++.. |+.|.+++...|+..+|...|.+.. ...+......+
T Consensus 314 ~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL-----------------------------------~l~p~hadam~ 358 (966)
T KOG4626|consen 314 ELQPNFPDAYNNLANALKDKGSVTEAVDCYNKAL-----------------------------------RLCPNHADAMN 358 (966)
T ss_pred hcCCCchHHHhHHHHHHHhccchHHHHHHHHHHH-----------------------------------HhCCccHHHHH
Confidence 443332 5555555555555555555555544 33344555667
Q ss_pred HHHHHhHhcCCHHHHHHHhccCCC--CC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhhcC
Q 002834 630 ALLHLYAKCGSIFSASKIFQCHPQ--KD-VVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDH-VVITAVLSACSHAG 705 (875)
Q Consensus 630 ~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~a~~~~g 705 (875)
.|...|.+.|.+++|..+|....+ |+ ....|.|...|-+.|+.++|+..|++.+. +.|+. ..|+.+...|-..|
T Consensus 359 NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 359 NLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMG 436 (966)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhh
Confidence 788889999999999999988776 33 35789999999999999999999999988 78884 56888889999999
Q ss_pred cHHHHHHHHHHhHHHhCCCCCh-hHHHHHHHHhhcCCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHH
Q 002834 706 LVDEGLEIFRSIEKVQGIKPTP-EQYASLVDLLARGGQISDAYSLVNRM-PVEADC-NVWGTLLGACR 770 (875)
Q Consensus 706 ~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~ 770 (875)
+++.|.+.+.++.. +.|.. +..+.|..+|-.+|..++|++-++.. +++||. ..+.+++.+..
T Consensus 437 ~v~~A~q~y~rAI~---~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQ---INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred hHHHHHHHHHHHHh---cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHH
Confidence 99999999999977 78884 48899999999999999999999887 488875 77888876654
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.86 E-value=4.9e-17 Score=172.76 Aligned_cols=553 Identities=11% Similarity=0.042 Sum_probs=367.4
Q ss_pred hcCChhHHHHHhhhcC--CCCccc--hHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHH----HhccCCh
Q 002834 298 RFGRTEEAELLFRRMK--SRDLVS--WNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPA----CAYLKNL 369 (875)
Q Consensus 298 ~~g~~~~A~~~~~~~~--~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~----~~~~~~~ 369 (875)
..|++-.|+.+|.... .|...+ .-.+-..+.+.|+.+.|+..|.+..+.+ |+...-...|.- +.....+
T Consensus 176 nkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLd---p~~v~alv~L~~~~l~~~d~~s~ 252 (1018)
T KOG2002|consen 176 NKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLD---PTCVSALVALGEVDLNFNDSDSY 252 (1018)
T ss_pred ccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcC---hhhHHHHHHHHHHHHHccchHHH
Confidence 3456666666666532 121111 1112234456677777777777776643 432221111111 1112234
Q ss_pred hhHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcCCCC------cchHHHHHHHHhccCChhHHHHHH
Q 002834 370 KVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRRD------LISWNSMLDAFSESGYNSQFLNLL 443 (875)
Q Consensus 370 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~ 443 (875)
..+.+++........ .++.+.+.|.+.|...|++..+..+...+...+ ..+|-.+.++|...|++++|...|
T Consensus 253 ~~~~~ll~~ay~~n~--~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY 330 (1018)
T KOG2002|consen 253 KKGVQLLQRAYKENN--ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYY 330 (1018)
T ss_pred HHHHHHHHHHHhhcC--CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 445555554444432 222267788888888888888888777764432 235777888899999999999998
Q ss_pred HHHHHCCCCCChh--hHHHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcC----CHHHHHHHHH
Q 002834 444 NCMLMEGIRPDSI--TILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCR----NIKYAFNVFQ 517 (875)
Q Consensus 444 ~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~ 517 (875)
.+..+. .||.+ .+..+-..+.+.|+.+.+...|+.+.+.. +.+..+...+...|...+ ..+.|..++.
T Consensus 331 ~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~----p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~ 404 (1018)
T KOG2002|consen 331 MESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL----PNNYETMKILGCLYAHSAKKQEKRDKASNVLG 404 (1018)
T ss_pred HHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC----cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHH
Confidence 777654 45543 34566777888899999999998888875 556666677777777665 5677777777
Q ss_pred hhccC-C-CcccHHHHHHHhhcCCChHHHHHHHHhhh-------cC-CCccHHHHHHHHHHcCCchHHHHHHHHHHHC--
Q 002834 518 SLLEK-R-NLVTFNPVISGYANCGSADEAFMTFSRIY-------AR-DLTPWNLMIRVYAENDFPNQALSLFLKLQAQ-- 585 (875)
Q Consensus 518 ~~~~~-p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-- 585 (875)
+.... | |...|-.+...+... ++..++..+..+. .. .+...|.+...+...|++++|...|......
T Consensus 405 K~~~~~~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~ 483 (1018)
T KOG2002|consen 405 KVLEQTPVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLL 483 (1018)
T ss_pred HHHhcccccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhh
Confidence 76664 3 666776666666443 4333366555442 22 2222899999999999999999999987654
Q ss_pred -CCCCCc-----chHh-cHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC---CC
Q 002834 586 -GMKPDA-----VTIM-SLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KD 655 (875)
Q Consensus 586 -g~~p~~-----~~~~-~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~ 655 (875)
...+|. +|.. .+-......++.+.|.+.+..+.+..+.-+..+--++.+....+...+|...+..+.+ .+
T Consensus 484 ~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~n 563 (1018)
T KOG2002|consen 484 EVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSN 563 (1018)
T ss_pred hhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCC
Confidence 223333 2222 2333445567899999999999999887666666666555667888999999987765 56
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCChhhHHHHHHHHhh------------cCcHHHHHHHHHHhHHHhC
Q 002834 656 VVMLTAMIGGYAMHGMGKAALKVFSDMLELG-VNPDHVVITAVLSACSH------------AGLVDEGLEIFRSIEKVQG 722 (875)
Q Consensus 656 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~a~~~------------~g~~~~a~~~~~~~~~~~~ 722 (875)
+..|+-+...+.+...+..|.+-|+...+.- ..+|..+...|.+.|.. .+..++|+++|.++.+
T Consensus 564 p~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--- 640 (1018)
T KOG2002|consen 564 PNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--- 640 (1018)
T ss_pred cHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh---
Confidence 7788888888888888988888777766532 23677776667665543 3456778888877766
Q ss_pred CCC-ChhHHHHHHHHhhcCCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccc-C-CCCccHH
Q 002834 723 IKP-TPEQYASLVDLLARGGQISDAYSLVNRMP--VEADCNVWGTLLGACRIHHEVELGRVVANRLFEME-A-DNIGNYV 797 (875)
Q Consensus 723 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p-~~~~~~~ 797 (875)
..| +...-+.++-+++..|++.+|.++|.+.. ...+..+|.++..+|...|++-.|+++|+..+... + +++....
T Consensus 641 ~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~ 720 (1018)
T KOG2002|consen 641 NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLH 720 (1018)
T ss_pred cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 334 45567778889999999999999999985 34456789999999999999999999999998764 3 4577888
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHhCCCcCCCceeEEEeCCEEeEEecCC---CCC-CChHHHHHHHHHHHHHHHhc
Q 002834 798 VMSNLYAADARWDGVVEIRKLMKTRDLKKPAACSWIEVERKNNAFMAGD---YSH-PRRDMIYWVLSILDEQIKDQ 869 (875)
Q Consensus 798 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~~~f~~~~---~~~-~~~~~~~~~~~~l~~~~~~~ 869 (875)
.||.+|.+.|+|.+|.+....... ..|..+.+..+-....|..+. +.+ +..+++...++.|....+.+
T Consensus 721 ~Lara~y~~~~~~eak~~ll~a~~----~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F 792 (1018)
T KOG2002|consen 721 YLARAWYEAGKLQEAKEALLKARH----LAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLF 792 (1018)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHH----hCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHH
Confidence 899999999999999996544332 234444444332222232222 222 45677777777777665544
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.84 E-value=8.1e-18 Score=189.93 Aligned_cols=417 Identities=11% Similarity=-0.001 Sum_probs=293.4
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHhcCC--CCcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHhhc
Q 002834 391 VGNALVSFYAKCSDMEAAYRTFLMICR--RDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPD-SITILTIIHFCTT 467 (875)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~ 467 (875)
.+......|.+.|++++|...|++... |+...|..+..+|.+.|++++|++.++..++. .|+ ...+..+-.++..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 556778888899999999999988633 56777888888999999999999999998875 344 3466677778888
Q ss_pred cCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcccHHHHHHHhhcCCChHHHHHH
Q 002834 468 VLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFMT 547 (875)
Q Consensus 468 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~ 547 (875)
.|+++.|...+..+..... ........++..+........+...++.-.. +..++..+.. |....+.+....-
T Consensus 207 lg~~~eA~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~ 279 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDG----FRNEQSAQAVERLLKKFAESKAKEILETKPE--NLPSVTFVGN-YLQSFRPKPRPAG 279 (615)
T ss_pred cCCHHHHHHHHHHHHHhCC----CccHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCCHHHHHH-HHHHccCCcchhh
Confidence 8888888887766554431 1111112222211111112223333322111 2333333322 2222222222222
Q ss_pred HHhhhcCCCcc---HHHHHHHH---HHcCCchHHHHHHHHHHHCC-CCCC-cchHhcHHHHhhcccchHHHHHHHHHHHH
Q 002834 548 FSRIYARDLTP---WNLMIRVY---AENDFPNQALSLFLKLQAQG-MKPD-AVTIMSLLPVCSQMASVHLLRQCHGYVIR 619 (875)
Q Consensus 548 ~~~~~~~~~~~---~~~l~~~~---~~~~~~~~A~~~~~~m~~~g-~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~ 619 (875)
+....+.+... +..+...+ ...+++++|+..|++..+.+ ..|+ ...+..+...+...|+.+.|...++.++.
T Consensus 280 ~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~ 359 (615)
T TIGR00990 280 LEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE 359 (615)
T ss_pred hhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22222222211 22222111 23468899999999988765 2343 34455666677788999999999999998
Q ss_pred hcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHH
Q 002834 620 ACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPD-HVVIT 695 (875)
Q Consensus 620 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~ 695 (875)
..+.....+..+...+...|++++|...|++..+ .+...|..+...+...|++++|+..|++..+. .|+ ...+.
T Consensus 360 l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~ 437 (615)
T TIGR00990 360 LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHI 437 (615)
T ss_pred cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHH
Confidence 8877788888999999999999999999997654 45778999999999999999999999999985 454 55566
Q ss_pred HHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCCH-HH------HHHHH
Q 002834 696 AVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEADC-NV------WGTLL 766 (875)
Q Consensus 696 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~------~~~l~ 766 (875)
.+..++.+.|++++|+..|++..+ ..|+ ...|..++.++...|++++|++.+++.. ..|+. .. +....
T Consensus 438 ~la~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a 514 (615)
T TIGR00990 438 QLGVTQYKEGSIASSMATFRRCKK---NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKA 514 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHH
Confidence 677789999999999999999977 3455 5688899999999999999999998863 44431 11 11222
Q ss_pred HH-HHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 767 GA-CRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 767 ~~-~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
.. +...|++++|+..++++++++|++...+..++++|.+.|++++|++.++...+
T Consensus 515 ~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 515 LALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 22 33469999999999999999999999999999999999999999998877654
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.82 E-value=7.3e-18 Score=180.98 Aligned_cols=298 Identities=13% Similarity=0.133 Sum_probs=200.1
Q ss_pred HHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcC
Q 002834 428 DAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCR 507 (875)
Q Consensus 428 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 507 (875)
..+...|++++|+..|+++.+.+ | .+..++..+...+...|
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~--p-------------------------------------~~~~~~~~la~~~~~~g 83 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVD--P-------------------------------------ETVELHLALGNLFRRRG 83 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcC--c-------------------------------------ccHHHHHHHHHHHHHcC
Confidence 34556677777888888777653 2 22334455666666667
Q ss_pred CHHHHHHHHHhhccCCCc------ccHHHHHHHhhcCCChHHHHHHHHhhhcCCCc---cHHHHHHHHHHcCCchHHHHH
Q 002834 508 NIKYAFNVFQSLLEKRNL------VTFNPVISGYANCGSADEAFMTFSRIYARDLT---PWNLMIRVYAENDFPNQALSL 578 (875)
Q Consensus 508 ~~~~A~~~~~~~~~~p~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~ 578 (875)
++++|..+++.+...|+. ..+..+...|.+.|++++|..+|+++.+.++. .+..++.+|.+.|++++|++.
T Consensus 84 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (389)
T PRK11788 84 EVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDV 163 (389)
T ss_pred cHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHH
Confidence 777777776666654321 24455566665666666666666655443222 255566666777777777777
Q ss_pred HHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCCCChhh
Q 002834 579 FLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQKDVVM 658 (875)
Q Consensus 579 ~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 658 (875)
++.+.+.+..+.... ....
T Consensus 164 ~~~~~~~~~~~~~~~-------------------------------------------------------------~~~~ 182 (389)
T PRK11788 164 AERLEKLGGDSLRVE-------------------------------------------------------------IAHF 182 (389)
T ss_pred HHHHHHhcCCcchHH-------------------------------------------------------------HHHH
Confidence 777765432211000 0112
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC--hhHHHHHHHH
Q 002834 659 LTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT--PEQYASLVDL 736 (875)
Q Consensus 659 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~ 736 (875)
|..++..+...|++++|+..|+++.+.. +.+...+..+...+.+.|++++|.++|+++.+ ..|+ ...+..++.+
T Consensus 183 ~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~~~l~~~ 258 (389)
T PRK11788 183 YCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEE---QDPEYLSEVLPKLMEC 258 (389)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HChhhHHHHHHHHHHH
Confidence 4456666777888888888888887742 22344566666788888888888888888866 2343 3467778888
Q ss_pred hhcCCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHh--cCCchhHH
Q 002834 737 LARGGQISDAYSLVNRMP-VEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAA--DARWDGVV 813 (875)
Q Consensus 737 ~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~~~A~ 813 (875)
|.+.|++++|.+.++++. ..|+...+..+...+...|+++.|...++++++..|+++.....+...+.. .|+.++++
T Consensus 259 ~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~ 338 (389)
T PRK11788 259 YQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESL 338 (389)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHH
Confidence 888888888888888874 567776667788888889999999999999999999887544334333322 56999999
Q ss_pred HHHHHHHhCCCcCCCc
Q 002834 814 EIRKLMKTRDLKKPAA 829 (875)
Q Consensus 814 ~~~~~~~~~~~~~~~~ 829 (875)
.+++.|..++++++|+
T Consensus 339 ~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 339 LLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHHHhCCCC
Confidence 9999998888888887
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=9.9e-17 Score=184.23 Aligned_cols=391 Identities=8% Similarity=-0.042 Sum_probs=232.4
Q ss_pred HHHHHHHHhcCCChhHHHHHHHhcCC-C--CcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCCh-hhHHHHHHHhhc
Q 002834 392 GNALVSFYAKCSDMEAAYRTFLMICR-R--DLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDS-ITILTIIHFCTT 467 (875)
Q Consensus 392 ~~~li~~~~~~g~~~~A~~~~~~~~~-~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~ 467 (875)
..-.+......|+.++|++++.+... . +...+..+...+...|++++|..+|++.++. .|+. ..+..+...+..
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 34445555566666666666666543 2 2233666666666677777777777666553 2221 222222233333
Q ss_pred cCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-C-CcccHHHHHHHhhcCCChHHHH
Q 002834 468 VLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEK-R-NLVTFNPVISGYANCGSADEAF 545 (875)
Q Consensus 468 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~l~~~~~~~~~~~~A~ 545 (875)
.++.+.|...++.+.+.. +.+.. +..+..++...|+.++|+..++++... | +...+..+...+...+..++|+
T Consensus 96 ~g~~~eA~~~l~~~l~~~----P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGA----PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred CCCHHHHHHHHHHHHHhC----CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH
Confidence 333334433333333332 22333 444455555555555555555554442 3 2233333444444444444444
Q ss_pred HHHHhhhcCCCc--------cHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccch---HHHHHHH
Q 002834 546 MTFSRIYARDLT--------PWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASV---HLLRQCH 614 (875)
Q Consensus 546 ~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~---~~a~~~~ 614 (875)
..++++.. .+. +...++..+.. ......+++ +.|.+.+
T Consensus 171 ~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~------------------------------~~~~~~~r~~~ad~Al~~~ 219 (765)
T PRK10049 171 GAIDDANL-TPAEKRDLEADAAAELVRLSFM------------------------------PTRSEKERYAIADRALAQY 219 (765)
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHHHHHhhcc------------------------------cccChhHHHHHHHHHHHHH
Confidence 44443332 110 00111111100 000111122 4455555
Q ss_pred HHHHHhc---CC-CchHHHH---HHHHhHhcCCHHHHHHHhccCCCCC---hh-hHHHHHHHHHHcCChHHHHHHHHHHH
Q 002834 615 GYVIRAC---FD-GVRLNGA---LLHLYAKCGSIFSASKIFQCHPQKD---VV-MLTAMIGGYAMHGMGKAALKVFSDML 683 (875)
Q Consensus 615 ~~~~~~~---~~-~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~~~~---~~-~~~~li~~~~~~g~~~~A~~~~~~m~ 683 (875)
+.+.+.. ++ .+..... .+..+...|++++|+..|+++.+.+ +. .-..+...|...|++++|+..|+++.
T Consensus 220 ~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l 299 (765)
T PRK10049 220 DALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELF 299 (765)
T ss_pred HHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 5555431 11 1111111 1223456789999999999887632 11 12225678899999999999999987
Q ss_pred HCCCCCC-----hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhC----------CCCC---hhHHHHHHHHhhcCCChHH
Q 002834 684 ELGVNPD-----HVVITAVLSACSHAGLVDEGLEIFRSIEKVQG----------IKPT---PEQYASLVDLLARGGQISD 745 (875)
Q Consensus 684 ~~g~~p~-----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~l~~~~~~~g~~~~ 745 (875)
+. .|. ......+..++...|++++|.++++++.+... -.|+ ...+..++..+...|++++
T Consensus 300 ~~--~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~e 377 (765)
T PRK10049 300 YH--PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQ 377 (765)
T ss_pred hc--CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHH
Confidence 64 332 23455566678899999999999999876311 1122 1245667888999999999
Q ss_pred HHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 002834 746 AYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTR 822 (875)
Q Consensus 746 A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 822 (875)
|++.++++. ..| +...+..+...+...|+.+.|++.++++++++|+++..+..++..+...|+|++|+.+++.+.+.
T Consensus 378 A~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 378 AEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999974 444 56888889999999999999999999999999999999999999999999999999998887654
No 20
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.80 E-value=7.1e-16 Score=161.80 Aligned_cols=718 Identities=11% Similarity=0.014 Sum_probs=396.2
Q ss_pred HHHHHHHhhcCCCCCCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCCchhhhHHHHHHHccCCchHHHHhhccCC
Q 002834 26 LSLFAHELQSSPSVRHNHQLFSAVLKSCTSLADILLGKALHGYVTKLGHISCQAVSKALLNLYAKCGVIDDCYKLFGQVD 105 (875)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 105 (875)
..++-.+...+ ..|++.||..+|..|+..|+.+.|- ++..|.-..++.+..+++.++....+.++.+.+.
T Consensus 10 tnfla~~e~~g--i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk------- 79 (1088)
T KOG4318|consen 10 TNFLALHEISG--ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK------- 79 (1088)
T ss_pred chHHHHHHHhc--CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------
Confidence 35666666765 8999999999999999999998888 9999998888889999999999999998877766
Q ss_pred CCCchhHHHHHHHHhcCCCChhH---HHHHHHHhHh----cCCCCCCcchHHHHHHHhhccCCcchh--------hhHHH
Q 002834 106 NTDPVTWNILLSGFACSHVDDAR---VMNLFYNMHV----RDQPKPNSVTVAIVLSACARLGGIFAG--------KSLHA 170 (875)
Q Consensus 106 ~~~~~~~~~li~~~~~~~~~~~~---a~~~~~~m~~----~~~~~~~~~~~~~ll~~~~~~~~~~~a--------~~~~~ 170 (875)
+|.+.+|+.|+.+|.+.| +... ..+.+..+.. .| +..-..-|-..+ .|+..-..+.. +.+++
T Consensus 80 ep~aDtyt~Ll~ayr~hG-Dli~fe~veqdLe~i~~sfs~~G-vgs~e~~fl~k~-~c~p~~lpda~n~illlv~eglwa 156 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHG-DLILFEVVEQDLESINQSFSDHG-VGSPERWFLMKI-HCCPHSLPDAENAILLLVLEGLWA 156 (1088)
T ss_pred CCchhHHHHHHHHHHhcc-chHHHHHHHHHHHHHHhhhhhhc-cCcHHHHHHhhc-ccCcccchhHHHHHHHHHHHHHHH
Confidence 788899999999999998 7654 2221222222 22 111111222222 22221111111 23344
Q ss_pred HHHHhCC--CCCcchhhHHHHHhHhcC-----ChhHHHHHhccCCC-CCeeeHHHHHHHHHcCCCcchHHHHHHHHHhCC
Q 002834 171 YVIKFGL--ERHTLVGNSLTSMYAKRG-----LVHDAYSVFDSIED-KDVVSWNAVISGLSENKVLGDAFRLFSWMLTEP 242 (875)
Q Consensus 171 ~~~~~g~--~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g 242 (875)
..++.+. +.......... +.+.. .+++-........+ ++..+|.+++.+-.-+|+.+.|..++.+|++.|
T Consensus 157 qllkll~~~Pvsa~~~p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g 234 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWNAPFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG 234 (1088)
T ss_pred HHHHHHhhCCcccccchHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC
Confidence 4444441 11111111111 12221 22333333333333 899999999999999999999999999999999
Q ss_pred CCCChhhHHhHHHHhccCCccccccchhHHHHHHHHhcccCCchhHhhhHHHHhHhcCChhHHHHHhhhcCCCCccchHH
Q 002834 243 IKPNYATILNILPICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAELLFRRMKSRDLVSWNA 322 (875)
Q Consensus 243 ~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 322 (875)
...+..-|..+|.+ .+ +......+..-+...|..+ +..|+..-+-....+|....+.+. .+....+++
T Consensus 235 fpir~HyFwpLl~g---~~---~~q~~e~vlrgmqe~gv~p-~seT~adyvip~l~N~~t~~~~e~-----sq~~hg~tA 302 (1088)
T KOG4318|consen 235 FPIRAHYFWPLLLG---IN---AAQVFEFVLRGMQEKGVQP-GSETQADYVIPQLSNGQTKYGEEG-----SQLAHGFTA 302 (1088)
T ss_pred CCcccccchhhhhc---Cc---cchHHHHHHHHHHHhcCCC-CcchhHHHHHhhhcchhhhhcccc-----cchhhhhhH
Confidence 99999888888876 22 3444445555555555555 888888777777665553322221 122222222
Q ss_pred HHHHHHcCC-----CHH-----HHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHhcCCC--Cchhh
Q 002834 323 IIAGYASND-----EWL-----KALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIHGYFLRHPYL--EEDAA 390 (875)
Q Consensus 323 li~~~~~~g-----~~~-----~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~ 390 (875)
-...-+-.| +.+ -.+..+.+..-.| +......|....+ ....|.-+...++-+.+..--.. +++..
T Consensus 303 avrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg-~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~ 380 (1088)
T KOG4318|consen 303 AVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLG-TDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVD 380 (1088)
T ss_pred HHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhc-cccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHH
Confidence 222222222 111 1112222222222 2222222222221 12244444555544444322111 11111
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHhcCCCCcc-hHH--HHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhc
Q 002834 391 VGNALVSFYAKCSDMEAAYRTFLMICRRDLI-SWN--SMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTT 467 (875)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~--~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 467 (875)
.+. ..+.+.|.++..+... .++ ..++-........+..++.... .|++.--. +..-.
T Consensus 381 a~~------------~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~l-----rkns~lr~-lv~Ls-- 440 (1088)
T KOG4318|consen 381 AFG------------ALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENL-----RKNSFLRQ-LVGLS-- 440 (1088)
T ss_pred HHH------------HHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh-----CcchHHHH-Hhhhh--
Confidence 111 2234455555444222 222 1111111112222222222222 23322100 00000
Q ss_pred cCchhhHHHHHHHHHHhcCC---CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcccHHHHHHHhhcCCChHHH
Q 002834 468 VLREGMVKETHGYLIKTGLL---LGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEA 544 (875)
Q Consensus 468 ~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A 544 (875)
-.+..+.... ...+-..+.+.++..+++.-+..+++..-+.....--...|..||+-++.+.+.+.|
T Consensus 441 ----------s~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf~g~ya~Li~l~~~hdkle~A 510 (1088)
T KOG4318|consen 441 ----------STELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLFAGLYALLIKLMDLHDKLEYA 510 (1088)
T ss_pred ----------HHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHH
Confidence 0000110000 001222334556666666666666665444443321235788999999999999999
Q ss_pred HHHHHhhhcCCCcc------HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCC--cchHhcHHHHhhcccchHHHHHHHHH
Q 002834 545 FMTFSRIYARDLTP------WNLMIRVYAENDFPNQALSLFLKLQAQGMKPD--AVTIMSLLPVCSQMASVHLLRQCHGY 616 (875)
Q Consensus 545 ~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~a~~~~~~~~~a~~~~~~ 616 (875)
..+.++...++... +..+.+.+.+.+...++..++.++.+.-..-+ ..++-.++......|..+..++.++.
T Consensus 511 l~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~ 590 (1088)
T KOG4318|consen 511 LSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADI 590 (1088)
T ss_pred HhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHH
Confidence 99999987776554 88899999999999999999999887432222 34556677777788899999999999
Q ss_pred HHHhcCC-CchHHHHHHHHhHhcCCHHHHHHHhccCCC---C---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 002834 617 VIRACFD-GVRLNGALLHLYAKCGSIFSASKIFQCHPQ---K---DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNP 689 (875)
Q Consensus 617 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 689 (875)
+...|+. + .-++....+.++...|.+.++...+ + +...|..++.-- ...+++.+..+-....
T Consensus 591 lvslgl~et----gPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke-~td~~qk~mDls~~iq------ 659 (1088)
T KOG4318|consen 591 LVSLGLSET----GPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKE-TTDSPQKTMDLSIPIQ------ 659 (1088)
T ss_pred HHHhhhhhc----ccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHhh-ccccHHHHHhhcchhH------
Confidence 8888877 3 3444556677888888877765432 2 222222222100 0112222221111100
Q ss_pred ChhhHHHHHHHHhhcCcHHHHHHHHHHh----------HHHh-CCCC---------ChhHHHHHHHHhhcCCChHHHHHH
Q 002834 690 DHVVITAVLSACSHAGLVDEGLEIFRSI----------EKVQ-GIKP---------TPEQYASLVDLLARGGQISDAYSL 749 (875)
Q Consensus 690 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~----------~~~~-~~~p---------~~~~~~~l~~~~~~~g~~~~A~~~ 749 (875)
-|.+.|++.+|.++.+.= ..+. .+.| +......|+..|.+.|+++.|..+
T Consensus 660 ----------~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~gl 729 (1088)
T KOG4318|consen 660 ----------KFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERASGL 729 (1088)
T ss_pred ----------HHHhcccccchhhccccCcccccCCCccccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhH
Confidence 123333333332222100 0000 0000 112333477889999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHhcccCCCCcc---HHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 002834 750 VNRMPVEADCNVWGTLLGACRIHH---EVELGRVVANRLFEMEADNIGN---YVVMSNLYAADARWDGVVEIRKLMKTRD 823 (875)
Q Consensus 750 ~~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 823 (875)
+.+++..|+......|+..+.++. |+.++....+++-++.|.++.+ |.-.+-+..+-.+.+-|.+++.+..++.
T Consensus 730 wnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~ 809 (1088)
T KOG4318|consen 730 WNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQL 809 (1088)
T ss_pred HhhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHcc
Confidence 999998888888888888877654 6778888888888888776653 3333333333334446666888887763
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.79 E-value=6.4e-16 Score=174.59 Aligned_cols=269 Identities=11% Similarity=0.033 Sum_probs=185.8
Q ss_pred CChHHHHHHHHhhhcCC---C---ccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCC-cchHhcHHHHhhcccchHHHH
Q 002834 539 GSADEAFMTFSRIYARD---L---TPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPD-AVTIMSLLPVCSQMASVHLLR 611 (875)
Q Consensus 539 ~~~~~A~~~~~~~~~~~---~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~~~~~~a~ 611 (875)
+++++|.+.|++....+ + ..|..+..++...|++++|+..|++..+. .|+ ...|..+...+...|+++.+.
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 44555555555554332 1 11555555566666666666666666543 343 234455555566666667777
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 002834 612 QCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVN 688 (875)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 688 (875)
..++.+.+..+.+..++..+...|...|++++|...|++... .+...|..+...+.+.|++++|+..|++..+. .+
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P 464 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FP 464 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CC
Confidence 666666666655677778888888999999999999987765 35567888888999999999999999998874 23
Q ss_pred CChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChh--------HHHHHHHHhhcCCChHHHHHHHHhC-CCCCCH
Q 002834 689 PDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPE--------QYASLVDLLARGGQISDAYSLVNRM-PVEADC 759 (875)
Q Consensus 689 p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~--------~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 759 (875)
-+...+..+..++...|++++|.+.|++..+ +.|+.. .+......+...|++++|.+++++. ...|+.
T Consensus 465 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~ 541 (615)
T TIGR00990 465 EAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPEC 541 (615)
T ss_pred CChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 3456777788899999999999999999876 444321 1122222334469999999999886 356654
Q ss_pred -HHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 760 -NVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 760 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
..+..+...+...|+++.|+..+++++++.+.....+ ....|.+|.++....++
T Consensus 542 ~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~--------~a~~~~~a~~~~~~~~~ 596 (615)
T TIGR00990 542 DIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELV--------QAISYAEATRTQIQVQE 596 (615)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 6688888999999999999999999999987644322 22345566666554443
No 22
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.79 E-value=1.3e-13 Score=140.22 Aligned_cols=366 Identities=11% Similarity=0.041 Sum_probs=284.9
Q ss_pred HHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-C-CcccHHHHHHHhhcCC
Q 002834 462 IHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEK-R-NLVTFNPVISGYANCG 539 (875)
Q Consensus 462 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~l~~~~~~~~ 539 (875)
-..|.+.+..+-+..++...++.- +....++...+..--..|..++...+|++.... | ....|-.....+...|
T Consensus 523 a~~~~k~~~~~carAVya~alqvf----p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~ag 598 (913)
T KOG0495|consen 523 AQSCEKRPAIECARAVYAHALQVF----PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAG 598 (913)
T ss_pred HHHHHhcchHHHHHHHHHHHHhhc----cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcC
Confidence 333444444444444444433332 334444444555555567777777777766654 3 4456666666777778
Q ss_pred ChHHHHHHHHhhhcCCCcc---HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHH
Q 002834 540 SADEAFMTFSRIYARDLTP---WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGY 616 (875)
Q Consensus 540 ~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~ 616 (875)
+...|..++..+.+.++.+ |..-++.-..+..++.|..+|.+... ..|+...|.--+..---++..++|.++++.
T Consensus 599 dv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe 676 (913)
T KOG0495|consen 599 DVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEE 676 (913)
T ss_pred CcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHH
Confidence 8888888888887766666 77777777888999999999988775 567777777666666777889999999998
Q ss_pred HHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC--CC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhh
Q 002834 617 VIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ--KD-VVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVV 693 (875)
Q Consensus 617 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 693 (875)
..+.-+.-..+|..+...+...++++.|...|....+ |+ +..|-.|...--+.|+.-+|..++++..-.+ +-|...
T Consensus 677 ~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~l 755 (913)
T KOG0495|consen 677 ALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALL 755 (913)
T ss_pred HHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchh
Confidence 8888888888999999999999999999999998876 44 4578888888888999999999999998864 556788
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 002834 694 ITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHH 773 (875)
Q Consensus 694 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~ 773 (875)
|...++.-.+.|..+.|..++.++.+. .+-+...|..-+....+.++-..+.+.+++. +.|+.+..+....++...
T Consensus 756 wle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkc--e~dphVllaia~lfw~e~ 831 (913)
T KOG0495|consen 756 WLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC--EHDPHVLLAIAKLFWSEK 831 (913)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhc--cCCchhHHHHHHHHHHHH
Confidence 999999999999999999999988773 4445568888888889999988888888876 456666777778888889
Q ss_pred ChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhCCCcCCCceeEEEeCCEEe
Q 002834 774 EVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTRDLKKPAACSWIEVERKNN 840 (875)
Q Consensus 774 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 840 (875)
.+++|.+-+++++..+|++..+|..+-..+...|.-++-.+++++.... .+..|..|..+...+.
T Consensus 832 k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avSK~i~ 896 (913)
T KOG0495|consen 832 KIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVSKDIK 896 (913)
T ss_pred HHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHhhhHH
Confidence 9999999999999999999999999888999999999999999988764 4567888988776553
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.79 E-value=3.3e-16 Score=175.78 Aligned_cols=325 Identities=10% Similarity=0.010 Sum_probs=194.6
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHH
Q 002834 423 WNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDA 502 (875)
Q Consensus 423 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~ 502 (875)
...++..+.+.|+.++|+.+++..+.....+....+ .+..++...|+.+.|...++.+.+.. +.+...+..+...
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~-~l~~~~l~~g~~~~A~~~l~~~l~~~----P~~~~a~~~la~~ 119 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLR-RWVISPLASSQPDAVLQVVNKLLAVN----VCQPEDVLLVASV 119 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHH-HHhhhHhhcCCHHHHHHHHHHHHHhC----CCChHHHHHHHHH
Confidence 344566677778888888887777765432222222 22233334555555555555555443 3344445555555
Q ss_pred HHhcCCHHHHHHHHHhhccC-C-CcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCcc---HHHHHHHHHHcCCchHHHH
Q 002834 503 YAKCRNIKYAFNVFQSLLEK-R-NLVTFNPVISGYANCGSADEAFMTFSRIYARDLTP---WNLMIRVYAENDFPNQALS 577 (875)
Q Consensus 503 ~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~ 577 (875)
+...|++++|...+++.... | +...+..+...+...|++++|...++.+...++.+ +..+ ..+...|++++|..
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~ 198 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHD 198 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHH
Confidence 55666666666666555442 3 33445555555555555555555554443222221 2111 12444455555555
Q ss_pred HHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCC-CchHHHHHHHHhHhcCCHHHHHHHhccCCC---
Q 002834 578 LFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFD-GVRLNGALLHLYAKCGSIFSASKIFQCHPQ--- 653 (875)
Q Consensus 578 ~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 653 (875)
.++.+. +..+. .......+...+.+.|++++|...|++...
T Consensus 199 ~~~~~l-----------------------------------~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p 243 (656)
T PRK15174 199 LARALL-----------------------------------PFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL 243 (656)
T ss_pred HHHHHH-----------------------------------hcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 555444 33222 222223344556667777777777776543
Q ss_pred CChhhHHHHHHHHHHcCChHH----HHHHHHHHHHCCCCCC-hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCCh-
Q 002834 654 KDVVMLTAMIGGYAMHGMGKA----ALKVFSDMLELGVNPD-HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTP- 727 (875)
Q Consensus 654 ~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~- 727 (875)
.+...+..+...|...|++++ |+..|++..+. .|+ ...+..+...+...|++++|...++++.+ ..|+.
T Consensus 244 ~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~ 318 (656)
T PRK15174 244 DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLP 318 (656)
T ss_pred CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCH
Confidence 345567777777777887774 78888888774 444 45666677788888888888888888766 45553
Q ss_pred hHHHHHHHHhhcCCChHHHHHHHHhCC-CCCCHHHHH-HHHHHHHhcCChhHHHHHHHHHhcccCCCC
Q 002834 728 EQYASLVDLLARGGQISDAYSLVNRMP-VEADCNVWG-TLLGACRIHHEVELGRVVANRLFEMEADNI 793 (875)
Q Consensus 728 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 793 (875)
..+..++.+|.+.|++++|.+.++++. ..|+...+. .+..++...|+.+.|+..++++++.+|++.
T Consensus 319 ~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 319 YVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 366677888888888888888888775 556553433 345566778888888888888888888764
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.78 E-value=2.4e-16 Score=176.93 Aligned_cols=317 Identities=9% Similarity=-0.024 Sum_probs=226.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhhccC-C-CcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCcc---HHHHHHHHHHcCCch
Q 002834 499 ILDAYAKCRNIKYAFNVFQSLLEK-R-NLVTFNPVISGYANCGSADEAFMTFSRIYARDLTP---WNLMIRVYAENDFPN 573 (875)
Q Consensus 499 li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~ 573 (875)
++..+.+.|++++|..+++..... | +...+..++.+....|++++|...++++...++.. +..+...+.+.|+++
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~ 127 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYA 127 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHH
Confidence 344445556666666665555442 2 33344444455555666666666666654443332 555566666666666
Q ss_pred HHHHHHHHHHHCCCCCC-cchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCC
Q 002834 574 QALSLFLKLQAQGMKPD-AVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHP 652 (875)
Q Consensus 574 ~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 652 (875)
+|+..++++.+. .|+ ...+..+...+...|+.+.|...+..+....+.+...+..+. .+...|++++|...++.+.
T Consensus 128 ~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l 204 (656)
T PRK15174 128 TVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALL 204 (656)
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHH
Confidence 666666666553 333 234445555666666666666666666555555444443333 4778899999999998865
Q ss_pred CC----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHH----HHHHHHHhHHHhCCC
Q 002834 653 QK----DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDE----GLEIFRSIEKVQGIK 724 (875)
Q Consensus 653 ~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~----a~~~~~~~~~~~~~~ 724 (875)
+. +...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++ |...|+++.+ +.
T Consensus 205 ~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~---l~ 280 (656)
T PRK15174 205 PFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ---FN 280 (656)
T ss_pred hcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh---hC
Confidence 52 23344556778889999999999999999853 3345566777789999999986 8999999977 56
Q ss_pred CC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHH
Q 002834 725 PT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEAD-CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSN 801 (875)
Q Consensus 725 p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 801 (875)
|+ ...+..++..+.+.|++++|...+++.. ..|+ ...+..+..++...|+++.|+..++++++.+|+++..+..++.
T Consensus 281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~ 360 (656)
T PRK15174 281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAA 360 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 66 4588999999999999999999999885 5564 5678888888999999999999999999999999877777899
Q ss_pred HHHhcCCchhHHHHHHHHHhC
Q 002834 802 LYAADARWDGVVEIRKLMKTR 822 (875)
Q Consensus 802 ~~~~~g~~~~A~~~~~~~~~~ 822 (875)
+|...|++++|++.++...+.
T Consensus 361 al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 361 ALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHh
Confidence 999999999999998877654
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.77 E-value=8.6e-15 Score=164.20 Aligned_cols=188 Identities=9% Similarity=0.012 Sum_probs=116.9
Q ss_pred HhHhcCCHHHHHHHhccCCCCC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-----CCChhhHHHHHHHHhhc
Q 002834 634 LYAKCGSIFSASKIFQCHPQKD----VVMLTAMIGGYAMHGMGKAALKVFSDMLELGV-----NPDHVVITAVLSACSHA 704 (875)
Q Consensus 634 ~~~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----~p~~~~~~~ll~a~~~~ 704 (875)
++.+.|++.++++.|+.+..+. ..+--.+..+|...+++++|+.+|+++..... .++......|.-++...
T Consensus 301 aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~ 380 (822)
T PRK14574 301 ALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNES 380 (822)
T ss_pred HHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhc
Confidence 4455677777777777666421 12444566777777777777777777655321 11222235566677777
Q ss_pred CcHHHHHHHHHHhHHHhC----------CCCC---hhHHHHHHHHhhcCCChHHHHHHHHhCC-C-CCCHHHHHHHHHHH
Q 002834 705 GLVDEGLEIFRSIEKVQG----------IKPT---PEQYASLVDLLARGGQISDAYSLVNRMP-V-EADCNVWGTLLGAC 769 (875)
Q Consensus 705 g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~ 769 (875)
+++++|..+++++.+... -.|+ ...+..++..+.-.|++.+|++.++++. . +.|...+..+...+
T Consensus 381 e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~ 460 (822)
T PRK14574 381 EQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIY 460 (822)
T ss_pred ccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 777777777777765211 0122 1234445666667777777777777763 3 33556667777777
Q ss_pred HhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 770 RIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 770 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
...|+...|++.++.+..++|++......++..+...|+|.+|..+.+.+.+
T Consensus 461 ~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 461 LARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 7777777777777777777777777777777777777777777666555443
No 26
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.77 E-value=2.6e-15 Score=172.59 Aligned_cols=362 Identities=11% Similarity=0.024 Sum_probs=233.5
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHhc---CCCCcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhc
Q 002834 391 VGNALVSFYAKCSDMEAAYRTFLMI---CRRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTT 467 (875)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 467 (875)
.+..+...+.+.|++++|..+|++. ...+...+..++..+...|+.++|+..+++.++. .|+...+..+-.++..
T Consensus 51 ~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~ 128 (765)
T PRK10049 51 GYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG--APDKANLLALAYVYKR 128 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 4555555566666666666666553 2223444555666666666666666666666654 2332225555555666
Q ss_pred cCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcc------cHHHHHHHhh-----
Q 002834 468 VLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLV------TFNPVISGYA----- 536 (875)
Q Consensus 468 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~------~~~~l~~~~~----- 536 (875)
.|+.+.|...++.+.+.. +.+......+..++...|..++|++.++.....|+.. ....++....
T Consensus 129 ~g~~~~Al~~l~~al~~~----P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~ 204 (765)
T PRK10049 129 AGRHWDELRAMTQALPRA----PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRS 204 (765)
T ss_pred CCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccC
Confidence 666666666666666654 4556666778888889999999999999888765420 1111222211
Q ss_pred cCCCh---HHHHHHHHhhhc---CCCcc---HH----HHHHHHHHcCCchHHHHHHHHHHHCCCC-CCcchHhcHHHHhh
Q 002834 537 NCGSA---DEAFMTFSRIYA---RDLTP---WN----LMIRVYAENDFPNQALSLFLKLQAQGMK-PDAVTIMSLLPVCS 602 (875)
Q Consensus 537 ~~~~~---~~A~~~~~~~~~---~~~~~---~~----~l~~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~a~~ 602 (875)
..+++ ++|+..++.+.. .++.. +. ..+..+...|++++|+..|+++.+.+.. |+
T Consensus 205 ~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~------------ 272 (765)
T PRK10049 205 EKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP------------ 272 (765)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH------------
Confidence 11223 555666655542 22222 10 1122334556666666666666654321 21
Q ss_pred cccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCCCC-------hhhHHHHHHHHHHcCChHHH
Q 002834 603 QMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQKD-------VVMLTAMIGGYAMHGMGKAA 675 (875)
Q Consensus 603 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A 675 (875)
.....+...|...|++++|+..|+++.+.+ ...+..+..++...|++++|
T Consensus 273 -----------------------~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA 329 (765)
T PRK10049 273 -----------------------WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGA 329 (765)
T ss_pred -----------------------HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHH
Confidence 111223556777788888888777654411 23455566678888999999
Q ss_pred HHHHHHHHHCCC-----------CCCh---hhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcC
Q 002834 676 LKVFSDMLELGV-----------NPDH---VVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARG 740 (875)
Q Consensus 676 ~~~~~~m~~~g~-----------~p~~---~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 740 (875)
+++++++.+... .|+. ..+..+...+...|+.++|++.++++.. ..|+ ...+..++.++...
T Consensus 330 ~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~---~~P~n~~l~~~lA~l~~~~ 406 (765)
T PRK10049 330 LTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY---NAPGNQGLRIDYASVLQAR 406 (765)
T ss_pred HHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhc
Confidence 999998887421 1232 2344556688899999999999999977 3454 55888999999999
Q ss_pred CChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccH
Q 002834 741 GQISDAYSLVNRMP-VEAD-CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNY 796 (875)
Q Consensus 741 g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 796 (875)
|++++|++.+++.. ..|+ ...+..+...+...|+++.|+..++++++..|+++.+.
T Consensus 407 g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 407 GWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 99999999999985 6676 46666777778889999999999999999999998653
No 27
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.77 E-value=1.1e-16 Score=171.73 Aligned_cols=292 Identities=12% Similarity=0.071 Sum_probs=158.7
Q ss_pred HHHhcCCChhHHHHHHHhcCCC---CcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchhh
Q 002834 397 SFYAKCSDMEAAYRTFLMICRR---DLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGM 473 (875)
Q Consensus 397 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 473 (875)
..+...|++++|...|+++... +..++..+...+...|++++|..+++.+...+..++..
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~----------------- 105 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQ----------------- 105 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHH-----------------
Confidence 3455677888888888877442 44567778888888888888888888887643221110
Q ss_pred HHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-C-CcccHHHHHHHhhcCCChHHHHHHHHhh
Q 002834 474 VKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEK-R-NLVTFNPVISGYANCGSADEAFMTFSRI 551 (875)
Q Consensus 474 a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 551 (875)
....+..+...|.+.|++++|..+|+++... | +..++..++..+.+.|++++|.+.++++
T Consensus 106 ------------------~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 167 (389)
T PRK11788 106 ------------------RLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERL 167 (389)
T ss_pred ------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 0112234445555555555555555555442 1 3445555555555555555555555555
Q ss_pred hcCCCcc--------HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCC-cchHhcHHHHhhcccchHHHHHHHHHHHHhcC
Q 002834 552 YARDLTP--------WNLMIRVYAENDFPNQALSLFLKLQAQGMKPD-AVTIMSLLPVCSQMASVHLLRQCHGYVIRACF 622 (875)
Q Consensus 552 ~~~~~~~--------~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~ 622 (875)
...++.+ +..++..+.+.|++++|...|+++.+. .|+ ...+..+...+...|+.+.|.+++..+...++
T Consensus 168 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 245 (389)
T PRK11788 168 EKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDP 245 (389)
T ss_pred HHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh
Confidence 4332221 334455556666666666666666543 222 22333333344444444444444444443333
Q ss_pred C-CchHHHHHHHHhHhcCCHHHHHHHhccCCC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 002834 623 D-GVRLNGALLHLYAKCGSIFSASKIFQCHPQ--KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLS 699 (875)
Q Consensus 623 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 699 (875)
. ....+..++..|.+.|++++|...++++.+ |+...+..++..+.+.|++++|+.+++++.+. .|+..++..++.
T Consensus 246 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~ 323 (389)
T PRK11788 246 EYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLD 323 (389)
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHH
Confidence 3 233344555556666666666666655443 44444555666666666666666666666553 466666665555
Q ss_pred HHhh---cCcHHHHHHHHHHhHHHhCCCCChh
Q 002834 700 ACSH---AGLVDEGLEIFRSIEKVQGIKPTPE 728 (875)
Q Consensus 700 a~~~---~g~~~~a~~~~~~~~~~~~~~p~~~ 728 (875)
.+.. .|+.+++..++++|.+ .+++|++.
T Consensus 324 ~~~~~~~~g~~~~a~~~~~~~~~-~~~~~~p~ 354 (389)
T PRK11788 324 YHLAEAEEGRAKESLLLLRDLVG-EQLKRKPR 354 (389)
T ss_pred HhhhccCCccchhHHHHHHHHHH-HHHhCCCC
Confidence 4442 3456666666666655 34455444
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=3.4e-14 Score=137.09 Aligned_cols=448 Identities=14% Similarity=0.090 Sum_probs=262.4
Q ss_pred chhHHHHHHHHhcCCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHhhccC--Ccch-hhhHHHHHHHhCCCCCcchhh
Q 002834 109 PVTWNILLSGFACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSACARLG--GIFA-GKSLHAYVIKFGLERHTLVGN 185 (875)
Q Consensus 109 ~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~--~~~~-a~~~~~~~~~~g~~~~~~~~~ 185 (875)
+.+=|.|+... .++ ...++.-+|+.|+..| ++.++..-..|++..+-.+ ++-- -.+.|-.|.+.| +.+..+|
T Consensus 116 V~~E~nL~kmI-S~~-EvKDs~ilY~~m~~e~-~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW- 190 (625)
T KOG4422|consen 116 VETENNLLKMI-SSR-EVKDSCILYERMRSEN-VDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW- 190 (625)
T ss_pred hcchhHHHHHH-hhc-ccchhHHHHHHHHhcC-CCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc-
Confidence 34567777765 566 8999999999999999 8888877777766544322 2222 233444555555 3334444
Q ss_pred HHHHHhHhcCChhHHHHHhccCCCCCeeeHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCChhhHHhHHHHhccCCcccc
Q 002834 186 SLTSMYAKRGLVHDAYSVFDSIEDKDVVSWNAVISGLSENKVLGDAFRLFSWMLTEPIKPNYATILNILPICASLDEDVG 265 (875)
Q Consensus 186 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 265 (875)
+.|++.+ ++-+...+...+|..||.++|+--..+.|.++|++......+.+..+|+.+|.+.+...
T Consensus 191 -------K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~---- 256 (625)
T KOG4422|consen 191 -------KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV---- 256 (625)
T ss_pred -------ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----
Confidence 4455544 44444445667899999999999999999999999999888999999999998775443
Q ss_pred ccchhHHHHHHHHhcccCCchhHhhhHHHHhHhcCChhHHHHHhhhcCCCCccchHHHHHHHHcCCCHHHHHHHHHHHHH
Q 002834 266 YFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAELLFRRMKSRDLVSWNAIIAGYASNDEWLKALNLFCELIT 345 (875)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 345 (875)
++.+...|+.....+ |..++|+++.+..+.|+++.|++- |++++.+|++
T Consensus 257 ---~K~Lv~EMisqkm~P-nl~TfNalL~c~akfg~F~~ar~a---------------------------alqil~EmKe 305 (625)
T KOG4422|consen 257 ---GKKLVAEMISQKMTP-NLFTFNALLSCAAKFGKFEDARKA---------------------------ALQILGEMKE 305 (625)
T ss_pred ---cHHHHHHHHHhhcCC-chHhHHHHHHHHHHhcchHHHHHH---------------------------HHHHHHHHHH
Confidence 466667776666665 777777777777777776665433 3344444444
Q ss_pred cCCCCCChhhHHHHHHHHhccCChhh-HHHHHHHHHhc-------CCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcCC
Q 002834 346 KEMIWPDSVTLVSLLPACAYLKNLKV-GKEIHGYFLRH-------PYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICR 417 (875)
Q Consensus 346 ~~~~~pd~~t~~~ll~~~~~~~~~~~-a~~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 417 (875)
-| +.|...+|..+|.-+++.++..+ +..++..+... ...++....+...+..+.+..+.+.|.++-.-...
T Consensus 306 iG-VePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~t 384 (625)
T KOG4422|consen 306 IG-VEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKT 384 (625)
T ss_pred hC-CCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHc
Confidence 44 55555555555544444444322 11111111110 01122222444444444455555545444333211
Q ss_pred --------C---CcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHHHhcC
Q 002834 418 --------R---DLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGL 486 (875)
Q Consensus 418 --------~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 486 (875)
+ ...-|..+....|+....+.-+..|+.|+-+-+-|+..+...++++..-.+.++...++|..++..|.
T Consensus 385 g~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh 464 (625)
T KOG4422|consen 385 GDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGH 464 (625)
T ss_pred CCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhh
Confidence 1 12346667778888888999999999999888889999999999999999999999999999998886
Q ss_pred CCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcccHHHHHHHhhcC-CC-hHHHHHHHHhhhcCCCcc--HHHH
Q 002834 487 LLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANC-GS-ADEAFMTFSRIYARDLTP--WNLM 562 (875)
Q Consensus 487 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-~~-~~~A~~~~~~~~~~~~~~--~~~l 562 (875)
.......-.+.. ++..-.-.|+...-..+-.+..+. -+ .+..+..-.++...+..+ .+..
T Consensus 465 ---t~r~~l~eeil~-------------~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~i 528 (625)
T KOG4422|consen 465 ---TFRSDLREEILM-------------LLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCI 528 (625)
T ss_pred ---hhhHHHHHHHHH-------------HHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHH
Confidence 322222222222 222222123222111221111111 01 111122223333333333 5666
Q ss_pred HHHHHHcCCchHHHHHHHHHHHCCCC-C---CcchHhcHHHHhhcccchHHHHHHHHHHHHhcCC
Q 002834 563 IRVYAENDFPNQALSLFLKLQAQGMK-P---DAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFD 623 (875)
Q Consensus 563 ~~~~~~~~~~~~A~~~~~~m~~~g~~-p---~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~ 623 (875)
+-.+.+.|+.++|.++|..+.+.+-+ | ....+..++.+.....+...|...++.+...+.+
T Consensus 529 a~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 529 AILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred HHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence 66667788888888877777554422 2 2222233444444444555555555555444443
No 29
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.73 E-value=2.8e-14 Score=150.08 Aligned_cols=160 Identities=11% Similarity=0.008 Sum_probs=106.9
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcC--C-CchHHHHHHHHhH
Q 002834 560 NLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACF--D-GVRLNGALLHLYA 636 (875)
Q Consensus 560 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~--~-~~~~~~~l~~~~~ 636 (875)
+.++..+++.-+..+++..-+.....-+ | ..|..+++-|.....++.|..+.+.+..... . +...+..+.+.+.
T Consensus 463 ~ql~l~l~se~n~lK~l~~~ekye~~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~ 539 (1088)
T KOG4318|consen 463 NQLHLTLNSEYNKLKILCDEEKYEDLLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQ 539 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHH
Confidence 4455555665555555544333332211 1 5677888888888888888888777665533 3 6777788888888
Q ss_pred hcCCHHHHHHHhccCCC-----CC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHH
Q 002834 637 KCGSIFSASKIFQCHPQ-----KD-VVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEG 710 (875)
Q Consensus 637 ~~g~~~~A~~~~~~~~~-----~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a 710 (875)
+.+...++..++.++.+ ++ ..+.--+....+..|+.+...++++-+...|+..+ .-+.....+.++...|
T Consensus 540 r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a 615 (1088)
T KOG4318|consen 540 RLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAA 615 (1088)
T ss_pred HhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhh
Confidence 88889999888888775 21 12334456666778888888888888877776552 2234455677888888
Q ss_pred HHHHHHhHHHhCCCCC
Q 002834 711 LEIFRSIEKVQGIKPT 726 (875)
Q Consensus 711 ~~~~~~~~~~~~~~p~ 726 (875)
.+.++...+.+.+.|.
T Consensus 616 ~ea~e~~~qkyk~~P~ 631 (1088)
T KOG4318|consen 616 QEAPEPEEQKYKPYPK 631 (1088)
T ss_pred hhcchHHHHHhcCChH
Confidence 8888887776555553
No 30
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=4.1e-14 Score=136.57 Aligned_cols=327 Identities=16% Similarity=0.161 Sum_probs=210.3
Q ss_pred hHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCCCChhhHHHHHHH---hcccCchHHHHHHHHHHHHhcCCCCchhhhHH
Q 002834 8 SWITIINGFCRDGLHKEALSLFAHELQSSPSVRHNHQLFSAVLKS---CTSLADILLGKALHGYVTKLGHISCQAVSKAL 84 (875)
Q Consensus 8 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 84 (875)
+=|.|+. +..+|..++++-+|++|...+ +..+...=..|++. +-.+.-.-.-.+.|-.|.+.|- .+..+|
T Consensus 118 ~E~nL~k-mIS~~EvKDs~ilY~~m~~e~--~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E-~S~~sW--- 190 (625)
T KOG4422|consen 118 TENNLLK-MISSREVKDSCILYERMRSEN--VDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGE-DSTSSW--- 190 (625)
T ss_pred chhHHHH-HHhhcccchhHHHHHHHHhcC--CCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccc-cccccc---
Confidence 3344443 456778888889999998876 44444444444433 2222222111222333333331 111122
Q ss_pred HHHHHccCCchHHHHhhccCCCCCchhHHHHHHHHhcCCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHhhccCCcch
Q 002834 85 LNLYAKCGVIDDCYKLFGQVDNTDPVTWNILLSGFACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSACARLGGIFA 164 (875)
Q Consensus 85 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 164 (875)
|.|.+.+ -+|+.. .....+|.+||.+.|+-. ..+.|.++|++-.... .+.+..+||.+|.+-. +..
T Consensus 191 -----K~G~vAd--L~~E~~-PKT~et~s~mI~Gl~K~~-~~ERA~~L~kE~~~~k-~kv~~~aFN~lI~~~S----~~~ 256 (625)
T KOG4422|consen 191 -----KSGAVAD--LLFETL-PKTDETVSIMIAGLCKFS-SLERARELYKEHRAAK-GKVYREAFNGLIGASS----YSV 256 (625)
T ss_pred -----ccccHHH--HHHhhc-CCCchhHHHHHHHHHHHH-hHHHHHHHHHHHHHhh-heeeHHhhhhhhhHHH----hhc
Confidence 3344333 344444 356678999999999988 9999999999998887 7899999999998765 333
Q ss_pred hhhHHHHHHHhCCCCCcchhhHHHHHhHhcCChhHHHH----HhccCC----CCCeeeHHHHHHHHHcCCCcch-HHHHH
Q 002834 165 GKSLHAYVIKFGLERHTLVGNSLTSMYAKRGLVHDAYS----VFDSIE----DKDVVSWNAVISGLSENKVLGD-AFRLF 235 (875)
Q Consensus 165 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~----~~~~~~----~~~~~~~~~li~~~~~~g~~~~-a~~l~ 235 (875)
.+.++.+|....+.||..++|+++.+.++.|+++.|.+ ++.+|+ +|...+|..+|..+++.++..+ |..++
T Consensus 257 ~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i 336 (625)
T KOG4422|consen 257 GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWI 336 (625)
T ss_pred cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHH
Confidence 48899999999999999999999999999999877654 444454 3777888888888888777643 44444
Q ss_pred HHHHh----CCCC---C-ChhhHHhHHHHhccCCccccccchhHHHHHHHHhcccCCchhHhhhHHHHhHhcCChhHHHH
Q 002834 236 SWMLT----EPIK---P-NYATILNILPICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAEL 307 (875)
Q Consensus 236 ~~m~~----~g~~---p-~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 307 (875)
.+... ...+ | +..-|.+.+..|.++. +...+.+++..........
T Consensus 337 ~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~---d~~LA~~v~~ll~tg~N~~------------------------ 389 (625)
T KOG4422|consen 337 NDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLR---DLELAYQVHGLLKTGDNWK------------------------ 389 (625)
T ss_pred HHHHHhhccCcccCCCCchhHHHHHHHHHHHHhh---hHHHHHHHHHHHHcCCchh------------------------
Confidence 44432 2222 2 2334455555555555 4444444433322111100
Q ss_pred HhhhcCC--CCccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHhcCCC
Q 002834 308 LFRRMKS--RDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIHGYFLRHPYL 385 (875)
Q Consensus 308 ~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 385 (875)
.|.. ....-|..+....|+....+..+..|+.|.-.- +-|+..+-..++++....+.++...++|..++..|..
T Consensus 390 ---~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~-y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght 465 (625)
T KOG4422|consen 390 ---FIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSA-YFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHT 465 (625)
T ss_pred ---hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce-ecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhh
Confidence 0000 112335566677778888888888888888877 7788888888888888888888888888888777743
Q ss_pred C
Q 002834 386 E 386 (875)
Q Consensus 386 ~ 386 (875)
.
T Consensus 466 ~ 466 (625)
T KOG4422|consen 466 F 466 (625)
T ss_pred h
Confidence 3
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.72 E-value=5.5e-12 Score=128.60 Aligned_cols=614 Identities=13% Similarity=0.048 Sum_probs=363.0
Q ss_pred CchHHHHHHHHHHHHhcCCCCchhhhHHHHHHHccCCchHHHHhhccCC---CCCchhHHHHHHHHhcCCCChhHHHHHH
Q 002834 57 ADILLGKALHGYVTKLGHISCQAVSKALLNLYAKCGVIDDCYKLFGQVD---NTDPVTWNILLSGFACSHVDDARVMNLF 133 (875)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~~a~~~~ 133 (875)
+|+..|+.+++-+.+.. +.++..+-+-...=-..|++..|+.+...=. ..+...|--.|+ .. .++.|-.+.
T Consensus 265 ~DikKaR~llKSvretn-P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiR----Lh-p~d~aK~vv 338 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETN-PKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIR----LH-PPDVAKTVV 338 (913)
T ss_pred HHHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHh----cC-ChHHHHHHH
Confidence 36677777777777664 2223333222222234566667776664332 223333433322 22 455555555
Q ss_pred HHhHhcCCCCCCcchHHHHHHHhhccCCcchhhhHHHHHHHhCCCCCcchhhHHHHHhHhcCChhHHHHHhccCCCCCee
Q 002834 134 YNMHVRDQPKPNSVTVAIVLSACARLGGIFAGKSLHAYVIKFGLERHTLVGNSLTSMYAKRGLVHDAYSVFDSIEDKDVV 213 (875)
Q Consensus 134 ~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 213 (875)
....+.- |+ +-...+.+.--..+...-.+++...++. ++.++..|-..+ ...+.++|..++.+..+--.
T Consensus 339 A~Avr~~---P~--Sv~lW~kA~dLE~~~~~K~RVlRKALe~-iP~sv~LWKaAV----elE~~~darilL~rAveccp- 407 (913)
T KOG0495|consen 339 ANAVRFL---PT--SVRLWLKAADLESDTKNKKRVLRKALEH-IPRSVRLWKAAV----ELEEPEDARILLERAVECCP- 407 (913)
T ss_pred HHHHHhC---CC--ChhhhhhHHhhhhHHHHHHHHHHHHHHh-CCchHHHHHHHH----hccChHHHHHHHHHHHHhcc-
Confidence 5544321 22 2222233332222333333444444443 233444443333 33445556666655443100
Q ss_pred eHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCChhhHHhHHHHhccCCccccccchhHHHHHHHHhcccCCchhHhhhHH
Q 002834 214 SWNAVISGLSENKVLGDAFRLFSWMLTEPIKPNYATILNILPICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALV 293 (875)
Q Consensus 214 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 293 (875)
+-.-|..++++..-++.|..+++..++. .|+ +..+|.+-.
T Consensus 408 ~s~dLwlAlarLetYenAkkvLNkaRe~--ipt--------------------------------------d~~IWitaa 447 (913)
T KOG0495|consen 408 QSMDLWLALARLETYENAKKVLNKAREI--IPT--------------------------------------DREIWITAA 447 (913)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhh--CCC--------------------------------------ChhHHHHHH
Confidence 1112233455555666666666666553 332 444444333
Q ss_pred HHhHhcCChhHHHHHhhhcCCCCccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChhhHH
Q 002834 294 SFYLRFGRTEEAELLFRRMKSRDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGK 373 (875)
Q Consensus 294 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~ 373 (875)
..--..|+.+...++.++- +..+...| +..+...|..=..+|-+.|.+-...
T Consensus 448 ~LEE~ngn~~mv~kii~rg---------------------------l~~L~~ng-v~i~rdqWl~eAe~~e~agsv~TcQ 499 (913)
T KOG0495|consen 448 KLEEANGNVDMVEKIIDRG---------------------------LSELQANG-VEINRDQWLKEAEACEDAGSVITCQ 499 (913)
T ss_pred HHHHhcCCHHHHHHHHHHH---------------------------HHHHhhcc-eeecHHHHHHHHHHHhhcCChhhHH
Confidence 3333444444443333221 11223344 5555555555555566666666666
Q ss_pred HHHHHHHhcCCCCc-hhhHHHHHHHHHhcCCChhHHHHHHHhcCC---CCcchHHHHHHHHhccCChhHHHHHHHHHHHC
Q 002834 374 EIHGYFLRHPYLEE-DAAVGNALVSFYAKCSDMEAAYRTFLMICR---RDLISWNSMLDAFSESGYNSQFLNLLNCMLME 449 (875)
Q Consensus 374 ~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 449 (875)
.+...++..|+... ...++..-.+.+.+.+.++-|..+|....+ .+...|...+..--..|..++...+|++.+..
T Consensus 500 AIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~ 579 (913)
T KOG0495|consen 500 AIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ 579 (913)
T ss_pred HHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 66666666665432 223566666777777777777777766533 35566777777777778888888888888775
Q ss_pred CCCCChhhHHHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-CCcccH
Q 002834 450 GIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEK-RNLVTF 528 (875)
Q Consensus 450 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p~~~~~ 528 (875)
- +-....|....+..-..|++..+..++..+.+.. +.+..++-+-+........+++|..+|.+.... |+...|
T Consensus 580 ~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~----pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~ 654 (913)
T KOG0495|consen 580 C-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN----PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVW 654 (913)
T ss_pred C-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC----CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhh
Confidence 2 2223334444444555677777777777766665 445666666777777777777777777776664 566666
Q ss_pred HHHHHHhhcCCChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcc-hHhcHHHHhhcccch
Q 002834 529 NPVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAV-TIMSLLPVCSQMASV 607 (875)
Q Consensus 529 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~a~~~~~~~ 607 (875)
..-+..-.-.++.++ |++++++..+. -|+-. .|..+-+.+.+.+++
T Consensus 655 mKs~~~er~ld~~ee-------------------------------A~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~i 701 (913)
T KOG0495|consen 655 MKSANLERYLDNVEE-------------------------------ALRLLEEALKS--FPDFHKLWLMLGQIEEQMENI 701 (913)
T ss_pred HHHhHHHHHhhhHHH-------------------------------HHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHH
Confidence 555555544444444 44444444432 23322 233333444445555
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002834 608 HLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLE 684 (875)
Q Consensus 608 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 684 (875)
+.+...+..-.+..+..+.+|-.|...-.+.|++-.|..+|++..- .|...|-..|..-.+.|+.+.|..+..+.++
T Consensus 702 e~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 702 EMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQ 781 (913)
T ss_pred HHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555677777888888888888999999987654 4667888999999999999999999888887
Q ss_pred CCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCCH-HHH
Q 002834 685 LGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP-VEADC-NVW 762 (875)
Q Consensus 685 ~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~ 762 (875)
. ++-+...|.--|...-+.++-......+++. .-|+.....+...+....+++.|.++|.+.. ..||. ++|
T Consensus 782 e-cp~sg~LWaEaI~le~~~~rkTks~DALkkc------e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~w 854 (913)
T KOG0495|consen 782 E-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC------EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAW 854 (913)
T ss_pred h-CCccchhHHHHHHhccCcccchHHHHHHHhc------cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHH
Confidence 5 5556667777777666666666665555444 3355566677788888899999999998874 66765 889
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHH
Q 002834 763 GTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMS 800 (875)
Q Consensus 763 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 800 (875)
..+...+..||.-+.-++++.+...-+|.....|...+
T Consensus 855 a~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avS 892 (913)
T KOG0495|consen 855 AWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVS 892 (913)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHh
Confidence 99999999999999999999999999998877665544
No 32
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.72 E-value=4.5e-13 Score=150.51 Aligned_cols=438 Identities=10% Similarity=0.006 Sum_probs=256.7
Q ss_pred HHHHhHhcCChhHHHHHhhhcCCCCcc---chHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHH---HHHHHHhc
Q 002834 292 LVSFYLRFGRTEEAELLFRRMKSRDLV---SWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLV---SLLPACAY 365 (875)
Q Consensus 292 li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~---~ll~~~~~ 365 (875)
-+-...+.|+++.|+..|++..+.+.. ....++..+...|+.++|+..+++.. .|+...+. .+...+..
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~-----~p~n~~~~~llalA~ly~~ 114 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ-----SSMNISSRGLASAARAYRN 114 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc-----cCCCCCHHHHHHHHHHHHH
Confidence 333456677777777777766642222 12266666666677777777777665 13222222 22334455
Q ss_pred cCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcCCCCcchHHHHHHHHhc--cCChhHHHHHH
Q 002834 366 LKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRRDLISWNSMLDAFSE--SGYNSQFLNLL 443 (875)
Q Consensus 366 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~a~~~~ 443 (875)
.|+++.|.++++.+++..... ..++..++..|...++.++|++.++++...+......+..++.. .++..+|++.+
T Consensus 115 ~gdyd~Aiely~kaL~~dP~n--~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ 192 (822)
T PRK14574 115 EKRWDQALALWQSSLKKDPTN--PDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQAS 192 (822)
T ss_pred cCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHH
Confidence 566666666666666554332 22444555556666666666666666544333222222222222 33443466666
Q ss_pred HHHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCC
Q 002834 444 NCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKR 523 (875)
Q Consensus 444 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 523 (875)
+++.+.. +.+...+..++..+.+.|-...|.++..+-+.
T Consensus 193 ekll~~~---------------------------------------P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~-- 231 (822)
T PRK14574 193 SEAVRLA---------------------------------------PTSEEVLKNHLEILQRNRIVEPALRLAKENPN-- 231 (822)
T ss_pred HHHHHhC---------------------------------------CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcc--
Confidence 6655542 34445555666666666666666666555332
Q ss_pred CcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCccHHHHHHHHHHcCC---chHHHHHHHHHHHC-CCCCCcc-----hH
Q 002834 524 NLVTFNPVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDF---PNQALSLFLKLQAQ-GMKPDAV-----TI 594 (875)
Q Consensus 524 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~m~~~-g~~p~~~-----~~ 594 (875)
..+-...... +.+.|.+..+-...+.. ....+ .+.|+.-++.+... +-.|... ..
T Consensus 232 -~f~~~~~~~l-----~~~~~a~~vr~a~~~~~----------~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~ 295 (822)
T PRK14574 232 -LVSAEHYRQL-----ERDAAAEQVRMAVLPTR----------SETERFDIADKALADYQNLLTRWGKDPEAQADYQRAR 295 (822)
T ss_pred -ccCHHHHHHH-----HHHHHHHHHhhcccccc----------cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHH
Confidence 1111110000 00001111100000000 00011 12233333333321 1112211 11
Q ss_pred hcHHHHhhcccchHHHHHHHHHHHHhcCC-CchHHHHHHHHhHhcCCHHHHHHHhccCCCC---------ChhhHHHHHH
Q 002834 595 MSLLPVCSQMASVHLLRQCHGYVIRACFD-GVRLNGALLHLYAKCGSIFSASKIFQCHPQK---------DVVMLTAMIG 664 (875)
Q Consensus 595 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~ 664 (875)
..-+.+....++...+...++.+...+.+ ...+..++.++|...+++++|..+|.++... +......|..
T Consensus 296 ~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~y 375 (822)
T PRK14574 296 IDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYY 375 (822)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHH
Confidence 23344555555666666666666665555 5667778889999999999999999876431 2333567889
Q ss_pred HHHHcCChHHHHHHHHHHHHCCC-------------CCChhh-HHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHH
Q 002834 665 GYAMHGMGKAALKVFSDMLELGV-------------NPDHVV-ITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQY 730 (875)
Q Consensus 665 ~~~~~g~~~~A~~~~~~m~~~g~-------------~p~~~~-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 730 (875)
+|...+++++|..+++++.+... .||-.. +..+...+...|+..+|.+.++++.. .-+-|....
T Consensus 376 A~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~ 453 (822)
T PRK14574 376 SLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLR 453 (822)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHH
Confidence 99999999999999999987311 122223 33345578899999999999999976 233456688
Q ss_pred HHHHHHhhcCCChHHHHHHHHhCC-CCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCcc
Q 002834 731 ASLVDLLARGGQISDAYSLVNRMP-VEADC-NVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGN 795 (875)
Q Consensus 731 ~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 795 (875)
..+.+++...|+..+|++.++... ..|+. .+......+....+++..|+...+++++..|+++..
T Consensus 454 ~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 454 IALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 999999999999999999998775 66754 666677778888999999999999999999999854
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.71 E-value=7.8e-13 Score=140.45 Aligned_cols=536 Identities=12% Similarity=0.070 Sum_probs=363.1
Q ss_pred CCCcchHHHHHHHHHhCCCCCChhhHHhHHHHhccCCccccccchhHHHHHHHHhcccCCchhHhhhHHHHhHhcCChhH
Q 002834 225 NKVLGDAFRLFSWMLTEPIKPNYATILNILPICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEE 304 (875)
Q Consensus 225 ~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 304 (875)
.|+.++|.+++.+..+. .|. +...|..|...|-..|+.++
T Consensus 152 rg~~eeA~~i~~EvIkq--dp~--------------------------------------~~~ay~tL~~IyEqrGd~eK 191 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQ--DPR--------------------------------------NPIAYYTLGEIYEQRGDIEK 191 (895)
T ss_pred hCCHHHHHHHHHHHHHh--Ccc--------------------------------------chhhHHHHHHHHHHcccHHH
Confidence 49999999999999876 343 67778888888888898888
Q ss_pred HHHHhhhc---CCCCccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHh
Q 002834 305 AELLFRRM---KSRDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIHGYFLR 381 (875)
Q Consensus 305 A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 381 (875)
+...+-.. ...|..-|-.+-.-..+.|++++|.-+|.+..+.. +++...+---...|.+.|+...|..-+.++..
T Consensus 192 ~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~ 269 (895)
T KOG2076|consen 192 ALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQ 269 (895)
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHh
Confidence 88776433 34566778888888888889999999998888864 34444444555667788888888888888887
Q ss_pred cCCCCchhh---HHHHHHHHHhcCCChhHHHHHHHhcCC--C---CcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCC
Q 002834 382 HPYLEEDAA---VGNALVSFYAKCSDMEAAYRTFLMICR--R---DLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRP 453 (875)
Q Consensus 382 ~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 453 (875)
...+.+... ..-..++.+...++-+.|.+.++.... . +...++.++..+.+...++.+......+......+
T Consensus 270 ~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~ 349 (895)
T KOG2076|consen 270 LDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEK 349 (895)
T ss_pred hCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCC
Confidence 765333221 122345667777777888888877644 2 44578899999999999999999998887733222
Q ss_pred ChhhH--------------------------HHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcC
Q 002834 454 DSITI--------------------------LTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCR 507 (875)
Q Consensus 454 ~~~t~--------------------------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 507 (875)
|...+ .-+.-++.+....+....+.....+..++ ..-+...|..+.++|...|
T Consensus 350 d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~-~~d~~dL~~d~a~al~~~~ 428 (895)
T KOG2076|consen 350 DDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVW-VSDDVDLYLDLADALTNIG 428 (895)
T ss_pred ChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCC-hhhhHHHHHHHHHHHHhcc
Confidence 22221 12233445666677777777777777652 2556678899999999999
Q ss_pred CHHHHHHHHHhhccCC---CcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCcc---HHHHHHHHHHcCCchHHHHHHHH
Q 002834 508 NIKYAFNVFQSLLEKR---NLVTFNPVISGYANCGSADEAFMTFSRIYARDLTP---WNLMIRVYAENDFPNQALSLFLK 581 (875)
Q Consensus 508 ~~~~A~~~~~~~~~~p---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~ 581 (875)
++.+|+.+|..+...| +...|-.+..+|...|..+.|.+.++++....+.. -..|...|.+.|++++|++.+..
T Consensus 429 ~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 429 KYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQ 508 (895)
T ss_pred cHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhc
Confidence 9999999999999874 67789999999999999999999999998777766 56677889999999999999998
Q ss_pred HH--------HCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhc----------------------CC-CchHHHH
Q 002834 582 LQ--------AQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRAC----------------------FD-GVRLNGA 630 (875)
Q Consensus 582 m~--------~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~----------------------~~-~~~~~~~ 630 (875)
|. ..+..|+..........+...|+.+.-..+...++... .. .......
T Consensus 509 ~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~ 588 (895)
T KOG2076|consen 509 IINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQ 588 (895)
T ss_pred ccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHH
Confidence 64 22233444444444455566676666544433333211 11 2333334
Q ss_pred HHHHhHhcCCHHHHHHHhccCC--------CCChh----hHHHHHHHHHHcCChHHHHHHHHHHHHCCC--CCChh--h-
Q 002834 631 LLHLYAKCGSIFSASKIFQCHP--------QKDVV----MLTAMIGGYAMHGMGKAALKVFSDMLELGV--NPDHV--V- 693 (875)
Q Consensus 631 l~~~~~~~g~~~~A~~~~~~~~--------~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~--~- 693 (875)
++.+-.+.++.....+-...-. .-... .+.-++.++++.++.++|+.+...+..... .++.. .
T Consensus 589 ~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l 668 (895)
T KOG2076|consen 589 IIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKEL 668 (895)
T ss_pred HHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHH
Confidence 4444444444333322222111 11222 234577889999999999999998887542 22221 2
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC---hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCCH-HHHH-HHHH
Q 002834 694 ITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT---PEQYASLVDLLARGGQISDAYSLVNRMP-VEADC-NVWG-TLLG 767 (875)
Q Consensus 694 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~-~l~~ 767 (875)
-...+.++...+++..|..+++.|...++...+ ...|++..+.+.+.|+---=..++.... ..|+. .... ....
T Consensus 669 ~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh 748 (895)
T KOG2076|consen 669 QFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGH 748 (895)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeech
Confidence 234555788899999999999999875444333 2356656666666665444344444432 23322 1111 1122
Q ss_pred HHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHH
Q 002834 768 ACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLY 803 (875)
Q Consensus 768 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 803 (875)
.....+.+.-|...+-+++...|++|-....+|-.+
T Consensus 749 ~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglaf 784 (895)
T KOG2076|consen 749 NLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAF 784 (895)
T ss_pred hHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 234567788899999999999999998777666543
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.71 E-value=2.9e-12 Score=136.15 Aligned_cols=347 Identities=13% Similarity=0.054 Sum_probs=227.3
Q ss_pred hcccCchHHHHHHHHHHHHhcCCCCchhhhHHHHHHHccCCchHHHHhhcc---CCCCCchhHHHHHHHHhcCCCChhHH
Q 002834 53 CTSLADILLGKALHGYVTKLGHISCQAVSKALLNLYAKCGVIDDCYKLFGQ---VDNTDPVTWNILLSGFACSHVDDARV 129 (875)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~~a 129 (875)
+...|++..|..++.++++.. +.+...|.+|...|-..|+.+.+...+=- +...|..-|-.+-.-..+.| .+.+|
T Consensus 149 lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~-~i~qA 226 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLG-NINQA 226 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcc-cHHHH
Confidence 344599999999999999975 56778899999999999999999886633 34456677888888788888 99999
Q ss_pred HHHHHHhHhcCCCCCCcchHHHHHHHhhccCCcchhhhHHHHHHHhCCCCCcchhhH----HHHHhHhcCChhHHHHHhc
Q 002834 130 MNLFYNMHVRDQPKPNSVTVAIVLSACARLGGIFAGKSLHAYVIKFGLERHTLVGNS----LTSMYAKRGLVHDAYSVFD 205 (875)
Q Consensus 130 ~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~----li~~~~~~g~~~~A~~~~~ 205 (875)
.-.|.+..+.. +++...+--=...|-+.|+...|...+.++.....+.|..-.-. .++.|...++.+.|.+.++
T Consensus 227 ~~cy~rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 227 RYCYSRAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999998876 66666666667778889999999999999988764333333333 3556677788889998888
Q ss_pred cCCC-----CCeeeHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCChhhHHhHHHHhccCCccccccchhHHHHHHHHh-
Q 002834 206 SIED-----KDVVSWNAVISGLSENKVLGDAFRLFSWMLTEPIKPNYATILNILPICASLDEDVGYFFGREIHCYVLRR- 279 (875)
Q Consensus 206 ~~~~-----~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~- 279 (875)
.... -+...++.++..+.+...++.|......+......+|..-+.+= ...+.-.......
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~-------------~~~~~~~~~~~~~~ 371 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD-------------ERRREEPNALCEVG 371 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh-------------hhccccccccccCC
Confidence 7664 34557888999999999999999999998874444442222000 0000000000000
Q ss_pred cccCCchhH-hhhHHHHhHhcCChhHHHHHhhhcCC----CCccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChh
Q 002834 280 AELIADVSV-CNALVSFYLRFGRTEEAELLFRRMKS----RDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSV 354 (875)
Q Consensus 280 ~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~ 354 (875)
....++..+ ...+.-...+.+...+++.-|-.... -+...|.-+..+|...|++.+|+.+|..+.... ..-+..
T Consensus 372 ~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~-~~~~~~ 450 (895)
T KOG2076|consen 372 KELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNRE-GYQNAF 450 (895)
T ss_pred CCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCc-cccchh
Confidence 011114444 22222223334444444433322221 234456666777777777777777777776654 333445
Q ss_pred hHHHHHHHHhccCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcCCCC
Q 002834 355 TLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRRD 419 (875)
Q Consensus 355 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 419 (875)
.|..+-..+...+..+.|.+.+..++... |+...+..+|...|.+.|+.++|.+.++.+..||
T Consensus 451 vw~~~a~c~~~l~e~e~A~e~y~kvl~~~--p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 451 VWYKLARCYMELGEYEEAIEFYEKVLILA--PDNLDARITLASLYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence 56566666666666666666666666553 2222255677777778888888888887776555
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.69 E-value=4.9e-14 Score=136.75 Aligned_cols=475 Identities=10% Similarity=0.066 Sum_probs=284.7
Q ss_pred HHHHcCCCcchHHHHHHHHHhCCCCCChhhHHhHHHHhccCCccccccchhHHHHHHHHhcccCCchhHhhhHHHHhHhc
Q 002834 220 SGLSENKVLGDAFRLFSWMLTEPIKPNYATILNILPICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRF 299 (875)
Q Consensus 220 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 299 (875)
.-|.-+....+|+..|+-..+...-|+ ....-..+.+.|.+.
T Consensus 209 qqy~~ndm~~ealntyeiivknkmf~n--------------------------------------ag~lkmnigni~~kk 250 (840)
T KOG2003|consen 209 QQYEANDMTAEALNTYEIIVKNKMFPN--------------------------------------AGILKMNIGNIHFKK 250 (840)
T ss_pred HHhhhhHHHHHHhhhhhhhhcccccCC--------------------------------------Cceeeeeecceeeeh
Confidence 344445566777777777776666664 112222344566777
Q ss_pred CChhHHHHHhhhcCC--CCc------cchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChhh
Q 002834 300 GRTEEAELLFRRMKS--RDL------VSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKV 371 (875)
Q Consensus 300 g~~~~A~~~~~~~~~--~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~ 371 (875)
..+..|+++++.... |++ ...+.+--.+.+.|+++.|+..|+...+.. |+-.+-..++-.+.-.|+.+.
T Consensus 251 r~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~---pn~~a~~nl~i~~f~i~d~ek 327 (840)
T KOG2003|consen 251 REFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEA---PNFIAALNLIICAFAIGDAEK 327 (840)
T ss_pred hhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhC---ccHHhhhhhhhhheecCcHHH
Confidence 888888888876543 221 123344446788999999999999988865 888877777777777788888
Q ss_pred HHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcCCCCcchHHHHH-----HHHhccC--ChhHHHHHHH
Q 002834 372 GKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRRDLISWNSML-----DAFSESG--YNSQFLNLLN 444 (875)
Q Consensus 372 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li-----~~~~~~g--~~~~a~~~~~ 444 (875)
.++.|..++.....++.. - |.+.. ..|+....|.-| .-.-+.+ +.++++-.--
T Consensus 328 mkeaf~kli~ip~~~ddd-k-------yi~~~------------ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~ 387 (840)
T KOG2003|consen 328 MKEAFQKLIDIPGEIDDD-K-------YIKEK------------DDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAA 387 (840)
T ss_pred HHHHHHHHhcCCCCCCcc-c-------ccCCc------------CCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHH
Confidence 888888887765544433 0 11110 111222222111 1111111 1122222222
Q ss_pred HHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCC
Q 002834 445 CMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRN 524 (875)
Q Consensus 445 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~ 524 (875)
+++.--+.||-.. -- +.. ++.+...... +.-...-..-..-|.+.|+++.|.+++.-..++ |
T Consensus 388 kiiapvi~~~fa~---g~---------dwc---le~lk~s~~~--~la~dlei~ka~~~lk~~d~~~aieilkv~~~k-d 449 (840)
T KOG2003|consen 388 KIIAPVIAPDFAA---GC---------DWC---LESLKASQHA--ELAIDLEINKAGELLKNGDIEGAIEILKVFEKK-D 449 (840)
T ss_pred HHhccccccchhc---cc---------HHH---HHHHHHhhhh--hhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhc-c
Confidence 2222222222110 00 011 1111111000 000011112233466778888888777776665 3
Q ss_pred cccHHHHHHH-----hhc-CCChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHH
Q 002834 525 LVTFNPVISG-----YAN-CGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLL 598 (875)
Q Consensus 525 ~~~~~~l~~~-----~~~-~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 598 (875)
..+-++...- |.+ -.++-.|.+.-+.....+-.. ....+.--
T Consensus 450 nk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn--------------------------------~~a~~nkg 497 (840)
T KOG2003|consen 450 NKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYN--------------------------------AAALTNKG 497 (840)
T ss_pred chhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccC--------------------------------HHHhhcCC
Confidence 3332222111 111 122333333333322211111 11111111
Q ss_pred HHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHH
Q 002834 599 PVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAA 675 (875)
Q Consensus 599 ~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 675 (875)
......|+++.+.+.+..+.+..-......-.+.-.+.+.|++++|++.|-++.. .++.+.-.+.+.|-...+..+|
T Consensus 498 n~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqa 577 (840)
T KOG2003|consen 498 NIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQA 577 (840)
T ss_pred ceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHH
Confidence 1122335555555555555544444223333344557788999999999987654 6777777888999999999999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC-
Q 002834 676 LKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP- 754 (875)
Q Consensus 676 ~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 754 (875)
++++-+.... ++.|+..+..|...|-+.|+-.+|.+++-+--+ -++-+.++...|...|....-+++|+.++++..
T Consensus 578 ie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaal 654 (840)
T KOG2003|consen 578 IELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL 654 (840)
T ss_pred HHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 9999888764 555677778888899999999999998765533 244467788889999999999999999999986
Q ss_pred CCCCHHHHHHHHHHHH-hcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCC
Q 002834 755 VEADCNVWGTLLGACR-IHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADAR 808 (875)
Q Consensus 755 ~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 808 (875)
.+|+..-|..++..|. +.||+.+|...|+......|++...+-.|..+....|-
T Consensus 655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 8999999999998885 57999999999999999999999888878777766653
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.60 E-value=2.5e-15 Score=152.06 Aligned_cols=254 Identities=17% Similarity=0.153 Sum_probs=114.4
Q ss_pred HHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHH-HHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCH
Q 002834 563 IRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLL-PVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSI 641 (875)
Q Consensus 563 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll-~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 641 (875)
...+.+.|++++|++++++.......|+...|-.++ ..+...++.+.+...++.+...+..++..+..++.. ...+++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 444466666777776665443332234444443333 344456667777777776666655566666667776 688999
Q ss_pred HHHHHHhccCCC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCChhhHHHHHHHHhhcCcHHHHHHHHHHhH
Q 002834 642 FSASKIFQCHPQ--KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELG-VNPDHVVITAVLSACSHAGLVDEGLEIFRSIE 718 (875)
Q Consensus 642 ~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 718 (875)
++|.++++..-+ ++...+..++..+...++++++..+++++.... .+++...|..+...+.+.|+.++|.+.++++.
T Consensus 94 ~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al 173 (280)
T PF13429_consen 94 EEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKAL 173 (280)
T ss_dssp ------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999998887644 566778888999999999999999999987643 34566677777788999999999999999998
Q ss_pred HHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCcc
Q 002834 719 KVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP--VEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGN 795 (875)
Q Consensus 719 ~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 795 (875)
+ ..|+ ......++..+...|+.+++.++++... .+.|+..|..+..++...|+.+.|...++++++..|+|+..
T Consensus 174 ~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~ 250 (280)
T PF13429_consen 174 E---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLW 250 (280)
T ss_dssp H---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHH
T ss_pred H---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccc
Confidence 8 5675 5578889999999999999888887764 34566789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHH
Q 002834 796 YVVMSNLYAADARWDGVVEIRKLMK 820 (875)
Q Consensus 796 ~~~l~~~~~~~g~~~~A~~~~~~~~ 820 (875)
...++.++...|+.++|.++++..-
T Consensus 251 ~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 251 LLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccc
Confidence 9999999999999999999876653
No 37
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=2.9e-12 Score=126.38 Aligned_cols=212 Identities=13% Similarity=0.079 Sum_probs=173.6
Q ss_pred ccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHH
Q 002834 604 MASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFS 680 (875)
Q Consensus 604 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 680 (875)
.|+.-.+.+-++.+++..+..+..|--+..+|....+.++-++.|..... .|+.+|..-...+.-.+++++|+.=|+
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~ 418 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQ 418 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHH
Confidence 46777778888888888877666677888889999999999999987664 466788888888888899999999999
Q ss_pred HHHHCCCCCC-hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCC
Q 002834 681 DMLELGVNPD-HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP-VEAD 758 (875)
Q Consensus 681 ~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~ 758 (875)
+.+. +.|+ ...|.-+.-+..+.++++++...|++.++. ++--++.|+....++..+++++.|.+.++... +.|+
T Consensus 419 Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 419 KAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 9988 4555 445666666777889999999999999884 44446789999999999999999999998874 4554
Q ss_pred ---------HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHH
Q 002834 759 ---------CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMK 820 (875)
Q Consensus 759 ---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 820 (875)
+.+...++-.-++ +|+..|+....+++++||+-..+|.+|+.+-.++|+.++|++++++-.
T Consensus 495 ~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3333344433333 899999999999999999999999999999999999999999987643
No 38
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.52 E-value=1.2e-11 Score=120.35 Aligned_cols=462 Identities=12% Similarity=0.105 Sum_probs=250.6
Q ss_pred hhhHHHHHhHhcCChhHHHHHhccCCC----CCeeeH-HHHHHHHHcCCCcchHHHHHHHHHhCCCCCC--hhhHHhHHH
Q 002834 183 VGNSLTSMYAKRGLVHDAYSVFDSIED----KDVVSW-NAVISGLSENKVLGDAFRLFSWMLTEPIKPN--YATILNILP 255 (875)
Q Consensus 183 ~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~-~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~--~~t~~~ll~ 255 (875)
+...|..-|.-.....+|+..++-+.+ |+.... -.+-..+.+.+.+.+|+++|+..... .|+ ..+
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~------ 274 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDM------ 274 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhh------
Confidence 334445556666677888888876654 222211 11234567888999999999887765 332 111
Q ss_pred HhccCCccccccchhHHHHHHHHhcccCCchhHhhhHHHHhHhcCChhHHHHHhhhcCC--CCccchHHHHHHHHcCCCH
Q 002834 256 ICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAELLFRRMKS--RDLVSWNAIIAGYASNDEW 333 (875)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~ 333 (875)
-+.+.+.+.-.+.+.|.+++|+.-|+...+ ||..+--.|+-.+..-|+.
T Consensus 275 -----------------------------rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ 325 (840)
T KOG2003|consen 275 -----------------------------RIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDA 325 (840)
T ss_pred -----------------------------HHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcH
Confidence 233445555567899999999999998764 6765544455555567999
Q ss_pred HHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCC--hhHHH--
Q 002834 334 LKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSD--MEAAY-- 409 (875)
Q Consensus 334 ~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~-- 409 (875)
++..+.|.+|..-. ..||..-|.. ...+.+.. ++.+. +-+-.+.-.-+..+ .+++.
T Consensus 326 ekmkeaf~kli~ip-~~~dddkyi~------~~ddp~~~--ll~ea-----------i~nd~lk~~ek~~ka~aek~i~t 385 (840)
T KOG2003|consen 326 EKMKEAFQKLIDIP-GEIDDDKYIK------EKDDPDDN--LLNEA-----------IKNDHLKNMEKENKADAEKAIIT 385 (840)
T ss_pred HHHHHHHHHHhcCC-CCCCcccccC------CcCCcchH--HHHHH-----------HhhHHHHHHHHhhhhhHHHHHHH
Confidence 99999999998765 4555543310 00000000 00000 00111111111111 11111
Q ss_pred --HHHHhcCCCCcc---hHH------------------HHHHHHhccCChhHHHHHHHHHHHCCCCCChhh--HHHHHHH
Q 002834 410 --RTFLMICRRDLI---SWN------------------SMLDAFSESGYNSQFLNLLNCMLMEGIRPDSIT--ILTIIHF 464 (875)
Q Consensus 410 --~~~~~~~~~~~~---~~~------------------~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t--~~~ll~~ 464 (875)
++..-+..|+-. -|. .-...+.++|+++.|+++++-..+..-+.-+.. -..++..
T Consensus 386 a~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~f 465 (840)
T KOG2003|consen 386 AAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRF 465 (840)
T ss_pred HHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHH
Confidence 111111222211 010 011234555666666666555544322111111 1111112
Q ss_pred hhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcccHHHHHHHhhcCCChHHH
Q 002834 465 CTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEA 544 (875)
Q Consensus 465 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A 544 (875)
.....++..+.++-+..+... .- +......-.+.....|++++|
T Consensus 466 lqggk~~~~aqqyad~aln~d----ry--------------------------------n~~a~~nkgn~~f~ngd~dka 509 (840)
T KOG2003|consen 466 LQGGKDFADAQQYADIALNID----RY--------------------------------NAAALTNKGNIAFANGDLDKA 509 (840)
T ss_pred HhcccchhHHHHHHHHHhccc----cc--------------------------------CHHHhhcCCceeeecCcHHHH
Confidence 222223333333333322211 00 111111111122334555555
Q ss_pred HHHHHhhhcCCCccH---HHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhc
Q 002834 545 FMTFSRIYARDLTPW---NLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRAC 621 (875)
Q Consensus 545 ~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 621 (875)
.+.+++....+...- ..+.-.+-..|+.++|++.|-++..- +.-+...+..+...|....+...+.+++..+...-
T Consensus 510 ~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sli 588 (840)
T KOG2003|consen 510 AEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLI 588 (840)
T ss_pred HHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccC
Confidence 555555554444331 11222345566666666666554321 12233344444455555555556666555555444
Q ss_pred CCCchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHH
Q 002834 622 FDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVL 698 (875)
Q Consensus 622 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 698 (875)
+.++.+...|.++|-+.|+-..|.+.+-.--. -++.+..-|...|....-+++++..|++..- ++|+..-|..++
T Consensus 589 p~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmi 666 (840)
T KOG2003|consen 589 PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMI 666 (840)
T ss_pred CCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHH
Confidence 44888888888889888988888877654332 3556666677778888888889999988765 789988888887
Q ss_pred H-HHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCC
Q 002834 699 S-ACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQ 742 (875)
Q Consensus 699 ~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 742 (875)
. ++.+.|++..|.++++...+ .++.+..++..|++.+...|.
T Consensus 667 asc~rrsgnyqka~d~yk~~hr--kfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 667 ASCFRRSGNYQKAFDLYKDIHR--KFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHhcccHHHHHHHHHHHHH--hCccchHHHHHHHHHhccccc
Confidence 7 45568899999999988866 466677788888888777764
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=1.5e-12 Score=134.05 Aligned_cols=162 Identities=9% Similarity=0.075 Sum_probs=78.8
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChh-HHHH
Q 002834 655 DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNP-DHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPE-QYAS 732 (875)
Q Consensus 655 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~ 732 (875)
.+.+|.++..+|.-+++.+.|++.|++.++ +.| ...+|+.+..-+.....+|.|...|+.+.. +.|+.. .|..
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~---~~~rhYnAwYG 494 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG---VDPRHYNAWYG 494 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc---CCchhhHHHHh
Confidence 344555555555555555555555555544 333 334444444444445555555555554422 222211 2333
Q ss_pred HHHHhhcCCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCch
Q 002834 733 LVDLLARGGQISDAYSLVNRMP-VEAD-CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWD 810 (875)
Q Consensus 733 l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 810 (875)
++-.|.++++++.|+-.|+++. ..|. .+....+...+.+.|+.++|.+.+++++-++|.|+-.-+..+.++...++++
T Consensus 495 lG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~ 574 (638)
T KOG1126|consen 495 LGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYV 574 (638)
T ss_pred hhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchH
Confidence 4445555555555555555442 3442 2334444444445555555555555555555555555555555555555555
Q ss_pred hHHHHHHHHHh
Q 002834 811 GVVEIRKLMKT 821 (875)
Q Consensus 811 ~A~~~~~~~~~ 821 (875)
+|+..++.+++
T Consensus 575 eal~~LEeLk~ 585 (638)
T KOG1126|consen 575 EALQELEELKE 585 (638)
T ss_pred HHHHHHHHHHH
Confidence 55555555543
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1.6e-10 Score=113.57 Aligned_cols=312 Identities=13% Similarity=0.091 Sum_probs=139.5
Q ss_pred HHHHhcCCChhHHHHHHHhcCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhH--HHHHHHhhccCchhh
Q 002834 396 VSFYAKCSDMEAAYRTFLMICRRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITI--LTIIHFCTTVLREGM 473 (875)
Q Consensus 396 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~--~~ll~~~~~~~~~~~ 473 (875)
...+.+.|..+.|+..|......-+..|.+.+....-.-+.+.+..+. .|...|..-. -.+..++......+.
T Consensus 171 Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~-----~~l~~~~h~M~~~F~~~a~~el~q~~e 245 (559)
T KOG1155|consen 171 GVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILV-----VGLPSDMHWMKKFFLKKAYQELHQHEE 245 (559)
T ss_pred HHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHH-----hcCcccchHHHHHHHHHHHHHHHHHHH
Confidence 344555677777777777766555555555443332222222221111 1111111111 122334444445555
Q ss_pred HHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-C----CcccHHHHHHHhhcCCChHHHHHHH
Q 002834 474 VKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEK-R----NLVTFNPVISGYANCGSADEAFMTF 548 (875)
Q Consensus 474 a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p----~~~~~~~l~~~~~~~~~~~~A~~~~ 548 (875)
+.+-.......|+ +.+..+-+....+.....++++|+.+|+++.+. | |..+|+.++-.-....++.--....
T Consensus 246 ~~~k~e~l~~~gf---~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v 322 (559)
T KOG1155|consen 246 ALQKKERLSSVGF---PNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNV 322 (559)
T ss_pred HHHHHHHHHhccC---CccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHH
Confidence 5555555566666 555555566666666777778888888777764 3 4556655543321111111111111
Q ss_pred HhhhcCCCccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCc-chHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchH
Q 002834 549 SRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDA-VTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRL 627 (875)
Q Consensus 549 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~ 627 (875)
-.+.+--+.+...+.+.|.-.++.++|+..|++..+. .|.. ..++.+-.-+....+...|.+.+..+++-++.|-..
T Consensus 323 ~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRA 400 (559)
T KOG1155|consen 323 SNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRA 400 (559)
T ss_pred HHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHH
Confidence 1222233333444444445555555555555554432 2221 122222223333333344444444444444334444
Q ss_pred HHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhc
Q 002834 628 NGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHA 704 (875)
Q Consensus 628 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~ 704 (875)
|-.|..+|.-.+...-|+-.|++..+ .|...|.+|..+|.+.++.++|++.|......| ..+...+..|...+-+.
T Consensus 401 WYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l 479 (559)
T KOG1155|consen 401 WYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEEL 479 (559)
T ss_pred HhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHH
Confidence 44444444444444444444443332 234444444444444444444444444444432 22333444444444444
Q ss_pred CcHHHHHHHHHHhH
Q 002834 705 GLVDEGLEIFRSIE 718 (875)
Q Consensus 705 g~~~~a~~~~~~~~ 718 (875)
++.++|..+|++..
T Consensus 480 ~d~~eAa~~yek~v 493 (559)
T KOG1155|consen 480 KDLNEAAQYYEKYV 493 (559)
T ss_pred HhHHHHHHHHHHHH
Confidence 44444444444433
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=4e-12 Score=131.03 Aligned_cols=202 Identities=12% Similarity=-0.021 Sum_probs=168.4
Q ss_pred HHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-
Q 002834 616 YVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQK---DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDH- 691 (875)
Q Consensus 616 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~- 691 (875)
.+++..+..+..|.++..+|.-+++.+.|++.|++..+- ...+|+.+..-+.....++.|...|+..+. +.|..
T Consensus 412 ~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~rhY 489 (638)
T KOG1126|consen 412 DLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPRHY 489 (638)
T ss_pred HHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCchhh
Confidence 344455558899999999999999999999999998873 456888888888899999999999999865 34443
Q ss_pred hhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChh-HHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHH
Q 002834 692 VVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPE-QYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGA 768 (875)
Q Consensus 692 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~ 768 (875)
..|..+...|.+.++++.|.-.|+++.+ +.|... ...+++..+.+.|+.|+|+++++++. .+| |+..--.-...
T Consensus 490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~i 566 (638)
T KOG1126|consen 490 NAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASI 566 (638)
T ss_pred HHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHH
Confidence 3466677789999999999999999966 888754 77888899999999999999999984 455 55444455566
Q ss_pred HHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 002834 769 CRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTR 822 (875)
Q Consensus 769 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 822 (875)
+...++.++|.+.+|++.++-|+++..|.++|.+|.+.|+.+.|+.-+-.+-+.
T Consensus 567 l~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 677899999999999999999999999999999999999999999988777654
No 42
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.47 E-value=1.6e-08 Score=103.82 Aligned_cols=210 Identities=12% Similarity=0.103 Sum_probs=129.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhccCC--C----cccHHHHHHHhhcCCChHHHHHHHHhhhcCCCccHHHHHHHHHH
Q 002834 495 IGNAILDAYAKCRNIKYAFNVFQSLLEKR--N----LVTFNPVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAE 568 (875)
Q Consensus 495 ~~~~li~~~~~~g~~~~A~~~~~~~~~~p--~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 568 (875)
.+..+...|-..|+++.|..+|++..+-| . ..+|......-.++.+++.|.++.+...-....+- ..+..
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~----~~~yd 464 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPE----LEYYD 464 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchh----hhhhc
Confidence 45667788888888888888888887753 1 23455555555566677777776665522111110 11122
Q ss_pred cCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHh
Q 002834 569 NDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIF 648 (875)
Q Consensus 569 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 648 (875)
.+.+-++ .+++ +...+...+..-...|-++.-+.+++.++...+-++.+.......+....-++++.++|
T Consensus 465 ~~~pvQ~-rlhr---------SlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~Y 534 (835)
T KOG2047|consen 465 NSEPVQA-RLHR---------SLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAY 534 (835)
T ss_pred CCCcHHH-HHHH---------hHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 2222111 1111 12233334444445566777788888888888777777777777777788889999999
Q ss_pred ccCCC----CCh-hhHHHHHHHHHHc---CChHHHHHHHHHHHHCCCCCChhhHHHHHHH--HhhcCcHHHHHHHHHHhH
Q 002834 649 QCHPQ----KDV-VMLTAMIGGYAMH---GMGKAALKVFSDMLELGVNPDHVVITAVLSA--CSHAGLVDEGLEIFRSIE 718 (875)
Q Consensus 649 ~~~~~----~~~-~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a--~~~~g~~~~a~~~~~~~~ 718 (875)
++... |++ ..||+.+.-+.+. -..+.|..+|++.++ |.+|...-+..|+-+ --..|....|.++++++.
T Consensus 535 ErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 535 ERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 98765 555 4788776655532 267899999999998 677765443333322 223577777777777765
Q ss_pred H
Q 002834 719 K 719 (875)
Q Consensus 719 ~ 719 (875)
.
T Consensus 614 ~ 614 (835)
T KOG2047|consen 614 S 614 (835)
T ss_pred h
Confidence 4
No 43
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.47 E-value=2.8e-11 Score=128.18 Aligned_cols=252 Identities=12% Similarity=0.033 Sum_probs=173.3
Q ss_pred HhcCCHHHHHHHHHhhccC-CCcccHH--HHHHHhhcCCChHHHHHHHHhhhcCCCcc---HHHHHHHHHHcCCchHHHH
Q 002834 504 AKCRNIKYAFNVFQSLLEK-RNLVTFN--PVISGYANCGSADEAFMTFSRIYARDLTP---WNLMIRVYAENDFPNQALS 577 (875)
Q Consensus 504 ~~~g~~~~A~~~~~~~~~~-p~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~ 577 (875)
.+.|+++.|...+.++.+. |+..... .....+...|+++.|...++++.+.++.. +..+...|.+.|++++|.+
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~ 208 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLD 208 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 5667777777777766654 3332222 22445666777777777777775555444 6667777788888888888
Q ss_pred HHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC---C
Q 002834 578 LFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ---K 654 (875)
Q Consensus 578 ~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~ 654 (875)
++..+.+.+..++. .+..+-. ..+..++....+..+.+...+.++.++. .
T Consensus 209 ~l~~l~k~~~~~~~-~~~~l~~--------------------------~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~ 261 (398)
T PRK10747 209 ILPSMAKAHVGDEE-HRAMLEQ--------------------------QAWIGLMDQAMADQGSEGLKRWWKNQSRKTRH 261 (398)
T ss_pred HHHHHHHcCCCCHH-HHHHHHH--------------------------HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhC
Confidence 88888877644321 1110000 0111122222233345555566666554 4
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHH
Q 002834 655 DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASL 733 (875)
Q Consensus 655 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 733 (875)
++.....+...+...|+.++|.+++++..+. +||.... ++.+....++.+++++..++..+ ..|+ ...+.++
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk---~~P~~~~l~l~l 334 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIK---QHGDTPLLWSTL 334 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHh---hCCCCHHHHHHH
Confidence 6777888889999999999999999998873 5555322 23344456899999999998877 3454 4468888
Q ss_pred HHHhhcCCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccc
Q 002834 734 VDLLARGGQISDAYSLVNRMP-VEADCNVWGTLLGACRIHHEVELGRVVANRLFEME 789 (875)
Q Consensus 734 ~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 789 (875)
+..+.+.|++++|.+.++... ..|+...+..+..++...|+.+.|...+++.+.+.
T Consensus 335 grl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 335 GQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 999999999999999998885 77998888889999999999999999999998764
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.46 E-value=2.4e-11 Score=128.68 Aligned_cols=244 Identities=9% Similarity=0.004 Sum_probs=167.4
Q ss_pred HHcCCchHHHHHHHHHHHCCCCCCcchHh--cHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHH
Q 002834 567 AENDFPNQALSLFLKLQAQGMKPDAVTIM--SLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSA 644 (875)
Q Consensus 567 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~--~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 644 (875)
.+.|+++.|...+.++.+. .|+..... .....+...|+.+.|...++.+.+..+.++.+...+...|.+.|++++|
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a 206 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSL 206 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHH
Confidence 4555555555555555432 33332222 1123444455555555555555555555666677777778888888888
Q ss_pred HHHhccCCCC---Ch--------hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHH
Q 002834 645 SKIFQCHPQK---DV--------VMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEI 713 (875)
Q Consensus 645 ~~~~~~~~~~---~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~ 713 (875)
.+++..+.+. +. .+|..++.......+.+...++++.+.+. .+.+......+..++...|+.++|.+.
T Consensus 207 ~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~ 285 (398)
T PRK10747 207 LDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQI 285 (398)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 8777766541 11 13333444444455566667777766443 345677788888899999999999999
Q ss_pred HHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCC
Q 002834 714 FRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEAD 791 (875)
Q Consensus 714 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 791 (875)
+++..+ ..|+.... ++......|+.+++.+.+++.. ..| |+..+..+...|...+++++|++.++++++..|+
T Consensus 286 L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~ 360 (398)
T PRK10747 286 ILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD 360 (398)
T ss_pred HHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 988866 45555322 2333445699999999998874 556 4566788889999999999999999999999998
Q ss_pred CCccHHHHHHHHHhcCCchhHHHHHHHH
Q 002834 792 NIGNYVVMSNLYAADARWDGVVEIRKLM 819 (875)
Q Consensus 792 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 819 (875)
+.. +..|+.++.+.|+.++|.++++.-
T Consensus 361 ~~~-~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 361 AYD-YAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHH-HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 654 678999999999999999987754
No 45
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=1.5e-08 Score=100.06 Aligned_cols=439 Identities=12% Similarity=0.093 Sum_probs=222.0
Q ss_pred hhHhhhHHHHhHhcCChhHHHHHhhhcCC---CCccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChh-hHHHHHH
Q 002834 286 VSVCNALVSFYLRFGRTEEAELLFRRMKS---RDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSV-TLVSLLP 361 (875)
Q Consensus 286 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~-t~~~ll~ 361 (875)
...|-.-...-...+++..|+.+|+.... +++..|--.+..-.++.++..|..++++....- |-.. .|.--+.
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l---PRVdqlWyKY~y 149 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL---PRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc---chHHHHHHHHHH
Confidence 33444444444456777888888887764 566667777777788888888888888877642 3321 1222222
Q ss_pred HHhccCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcCCCCcchHHHHHHHHhccCChhHHHH
Q 002834 362 ACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRRDLISWNSMLDAFSESGYNSQFLN 441 (875)
Q Consensus 362 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 441 (875)
.--..|++..|+++|..-.+. . |+...|.+.|..-.+.+.++.|..
T Consensus 150 mEE~LgNi~gaRqiferW~~w--~--------------------------------P~eqaW~sfI~fElRykeieraR~ 195 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEW--E--------------------------------PDEQAWLSFIKFELRYKEIERARS 195 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcC--C--------------------------------CcHHHHHHHHHHHHHhhHHHHHHH
Confidence 222345555555555544433 2 444444444444444444444444
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHHHh-cCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 002834 442 LLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKT-GLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLL 520 (875)
Q Consensus 442 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 520 (875)
+|++.+- +.|+..+|.-..+.=.+.|....+..+++.+++. |- .......+.++...-.++..++.|.-+|+-..
T Consensus 196 IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~--d~~~e~lfvaFA~fEe~qkE~ERar~iykyAl 271 (677)
T KOG1915|consen 196 IYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD--DEEAEILFVAFAEFEERQKEYERARFIYKYAL 271 (677)
T ss_pred HHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443 2344444444444444444444444444444432 10 01222334444444455666666666665444
Q ss_pred cC-C---CcccHHHHHHHhhcCCChHHHHHH--------HHhhhcCCCcc---HHHHHHHHHHcCCchHHHHHHHHHHHC
Q 002834 521 EK-R---NLVTFNPVISGYANCGSADEAFMT--------FSRIYARDLTP---WNLMIRVYAENDFPNQALSLFLKLQAQ 585 (875)
Q Consensus 521 ~~-p---~~~~~~~l~~~~~~~~~~~~A~~~--------~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~m~~~ 585 (875)
.. | ....|.....--.+-|+....+.. ++++...|+.. |--.++.-...|+.+...++|++....
T Consensus 272 d~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan 351 (677)
T KOG1915|consen 272 DHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN 351 (677)
T ss_pred HhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc
Confidence 32 2 122333333222333443332222 23344444444 444555556677888888888887754
Q ss_pred CCCCCcc-------hHhcHHHHh---hcccchHHHHHHHHHHHHhcCCCchHHHHHHHHh----HhcCCHHHHHHHhccC
Q 002834 586 GMKPDAV-------TIMSLLPVC---SQMASVHLLRQCHGYVIRACFDGVRLNGALLHLY----AKCGSIFSASKIFQCH 651 (875)
Q Consensus 586 g~~p~~~-------~~~~ll~a~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~ 651 (875)
++|-.. .|.-+=-+| ....+++...++++..++.-++...++.-+--+| .++.++..|.+++...
T Consensus 352 -vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~A 430 (677)
T KOG1915|consen 352 -VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNA 430 (677)
T ss_pred -CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 455221 111111111 2345667777777777765444333333333333 3456666666666554
Q ss_pred CC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhH
Q 002834 652 PQ--KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQ 729 (875)
Q Consensus 652 ~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 729 (875)
.. |-..++...|..-.+.++++....+|++.++-+ +-|-.+|......-...|+.+.|..+|+-+.....+.-....
T Consensus 431 IG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpell 509 (677)
T KOG1915|consen 431 IGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELL 509 (677)
T ss_pred hccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHH
Confidence 32 444555555555556666666666666666532 223445555555455566666666666655442111111224
Q ss_pred HHHHHHHhhcCCChHHHHHHHHhCC-CCCCHHHHHHHHH
Q 002834 730 YASLVDLLARGGQISDAYSLVNRMP-VEADCNVWGTLLG 767 (875)
Q Consensus 730 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~ 767 (875)
|-..++.-...|.++.|..+++... ..+-..+|.++..
T Consensus 510 wkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~ 548 (677)
T KOG1915|consen 510 WKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAK 548 (677)
T ss_pred HHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHH
Confidence 4445555555666666666666553 2223345555543
No 46
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.42 E-value=8.7e-11 Score=125.24 Aligned_cols=215 Identities=9% Similarity=-0.037 Sum_probs=117.9
Q ss_pred hhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHH----HHHHHHHHcCChH
Q 002834 601 CSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLT----AMIGGYAMHGMGK 673 (875)
Q Consensus 601 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~----~li~~~~~~g~~~ 673 (875)
....|+.+.|...++.+.+..+.++.+...+...|...|++++|.+.+....+ .+...+. ....++...+..+
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~ 242 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMAD 242 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444444445555555556666666666555555443 1211111 1111112222223
Q ss_pred HHHHHHHHHHHCCC---CCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhH---HHHHHHHhhcCCChHHHH
Q 002834 674 AALKVFSDMLELGV---NPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQ---YASLVDLLARGGQISDAY 747 (875)
Q Consensus 674 ~A~~~~~~m~~~g~---~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~ 747 (875)
++.+.+.++.+... +.+...+..+...+...|+.++|.+.+++..+ ..|+... .....-.....++.+.+.
T Consensus 243 ~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~---~~pd~~~~~~~~l~~~~~l~~~~~~~~~ 319 (409)
T TIGR00540 243 EGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK---KLGDDRAISLPLCLPIPRLKPEDNEKLE 319 (409)
T ss_pred cCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh---hCCCcccchhHHHHHhhhcCCCChHHHH
Confidence 33344444444311 12555666666677777777777777777765 3344331 111112223346666677
Q ss_pred HHHHhCC-CCC-CH--HHHHHHHHHHHhcCChhHHHHHHH--HHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHH
Q 002834 748 SLVNRMP-VEA-DC--NVWGTLLGACRIHHEVELGRVVAN--RLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLM 819 (875)
Q Consensus 748 ~~~~~~~-~~p-~~--~~~~~l~~~~~~~~~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 819 (875)
+.+++.. ..| |+ ....++.+.|...|++++|++.++ ++++..|++.. +..++.++.+.|+.++|.+++++-
T Consensus 320 ~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 320 KLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7766653 334 33 456677788888888888888888 56667776544 558888888888888888877653
No 47
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.41 E-value=3.1e-10 Score=106.51 Aligned_cols=261 Identities=16% Similarity=0.152 Sum_probs=158.1
Q ss_pred cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHH
Q 002834 433 SGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYA 512 (875)
Q Consensus 433 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 512 (875)
+++.++|.++|-+|.+. | +.+..+.-+|.+.|.+.|..+.|
T Consensus 48 s~Q~dKAvdlF~e~l~~----d-----------------------------------~~t~e~~ltLGnLfRsRGEvDRA 88 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE----D-----------------------------------PETFEAHLTLGNLFRSRGEVDRA 88 (389)
T ss_pred hcCcchHHHHHHHHHhc----C-----------------------------------chhhHHHHHHHHHHHhcchHHHH
Confidence 46788888888888763 2 23333445677778888888888
Q ss_pred HHHHHhhccCCCcc------cHHHHHHHhhcCCChHHHHHHHHhhhcCCC-cc--HHHHHHHHHHcCCchHHHHHHHHHH
Q 002834 513 FNVFQSLLEKRNLV------TFNPVISGYANCGSADEAFMTFSRIYARDL-TP--WNLMIRVYAENDFPNQALSLFLKLQ 583 (875)
Q Consensus 513 ~~~~~~~~~~p~~~------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~~~A~~~~~~m~ 583 (875)
+++-+.+..+||.. ..-.|..-|...|-++.|+.+|..+.+.+. .. ...|+..|-...+|++|+++-+++.
T Consensus 89 IRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~ 168 (389)
T COG2956 89 IRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLV 168 (389)
T ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 88888888876543 334456667788888888888888766332 22 6778888888888888888888888
Q ss_pred HCCCCCCcc----hHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCCCCh---
Q 002834 584 AQGMKPDAV----TIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQKDV--- 656 (875)
Q Consensus 584 ~~g~~p~~~----~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--- 656 (875)
+.+-++..+ .|..+........+++.|...+..+...++..+.+.-.+.+.+...|+++.|.+.++.+.+.|.
T Consensus 169 k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl 248 (389)
T COG2956 169 KLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYL 248 (389)
T ss_pred HcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHH
Confidence 776555433 2333333444445566666666666666666666666666666666666666666666655433
Q ss_pred -hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHH
Q 002834 657 -VMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVD 735 (875)
Q Consensus 657 -~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 735 (875)
.+...|..+|.+.|+.++.+..+.++.+.. +....-..+...-....-.+.|..++.+-.+ -+|+...+..+++
T Consensus 249 ~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~---r~Pt~~gf~rl~~ 323 (389)
T COG2956 249 SEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLR---RKPTMRGFHRLMD 323 (389)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHh---hCCcHHHHHHHHH
Confidence 244455566666666666666666666532 2222222222222222223344443333322 3566665555555
Q ss_pred Hh
Q 002834 736 LL 737 (875)
Q Consensus 736 ~~ 737 (875)
.-
T Consensus 324 ~~ 325 (389)
T COG2956 324 YH 325 (389)
T ss_pred hh
Confidence 44
No 48
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=3.9e-10 Score=110.94 Aligned_cols=325 Identities=10% Similarity=0.038 Sum_probs=218.3
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcccHHHHHHHhhcCCChHHHHHHHHhhhcCC-CccHHHHHHHHHH
Q 002834 490 DTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFMTFSRIYARD-LTPWNLMIRVYAE 568 (875)
Q Consensus 490 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~l~~~~~~ 568 (875)
..|...+-.....+.+.|....|++.|.....+ -+..|.+.+....-..+.+.+..+...+...+ ...--.+..+|..
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~e 239 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQE 239 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHH
Confidence 444444444555566778888888888877765 44555555444333333333322222221110 0001234455666
Q ss_pred cCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCC---CchHHHHHHHHhHhcCCHHHHH
Q 002834 569 NDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFD---GVRLNGALLHLYAKCGSIFSAS 645 (875)
Q Consensus 569 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~ 645 (875)
....++++.-.......|..-+...-+....+.-...+++.+..+|+.+.+..+- +..++..++-.-..+.++.---
T Consensus 240 l~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA 319 (559)
T KOG1155|consen 240 LHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLA 319 (559)
T ss_pred HHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHH
Confidence 6677777777777777765544433333334445667888888888888888554 5556655543333333333222
Q ss_pred HHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCC
Q 002834 646 KIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDH-VVITAVLSACSHAGLVDEGLEIFRSIEKVQGIK 724 (875)
Q Consensus 646 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 724 (875)
+..-.+.+-.+.|...+.+-|.-.++.++|+..|++..+. .|.. ..|+.+.+-|....+...|.+.++++.+ +.
T Consensus 320 ~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd---i~ 394 (559)
T KOG1155|consen 320 QNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD---IN 394 (559)
T ss_pred HHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh---cC
Confidence 2222333334455666677778888889999999998884 5554 4566666688888899999999988876 55
Q ss_pred C-ChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHH
Q 002834 725 P-TPEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSN 801 (875)
Q Consensus 725 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 801 (875)
| |-..|..|+.+|.-.+...=|+-++++.. .+| |+..|.+|..+|.+.++.+.|+..+++++....-+..+++.||+
T Consensus 395 p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~Lak 474 (559)
T KOG1155|consen 395 PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAK 474 (559)
T ss_pred chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 5 45588889999999999888998888885 566 77889999999988999999999999999888777888999999
Q ss_pred HHHhcCCchhHHHHHHHHH
Q 002834 802 LYAADARWDGVVEIRKLMK 820 (875)
Q Consensus 802 ~~~~~g~~~~A~~~~~~~~ 820 (875)
+|.+.++.++|...+++-.
T Consensus 475 Lye~l~d~~eAa~~yek~v 493 (559)
T KOG1155|consen 475 LYEELKDLNEAAQYYEKYV 493 (559)
T ss_pred HHHHHHhHHHHHHHHHHHH
Confidence 9999999999988765543
No 49
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=2.3e-09 Score=108.50 Aligned_cols=269 Identities=13% Similarity=0.034 Sum_probs=172.6
Q ss_pred HHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-C-CcccHHHHHHHhhcCC
Q 002834 462 IHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEK-R-NLVTFNPVISGYANCG 539 (875)
Q Consensus 462 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~l~~~~~~~~ 539 (875)
..-|...+++....++.+.+.+.. ++....+..-|..+...|+..+-..+=.++... | .+.+|-++.--|...|
T Consensus 251 ad~~y~~c~f~~c~kit~~lle~d----pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~ 326 (611)
T KOG1173|consen 251 ADRLYYGCRFKECLKITEELLEKD----PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIG 326 (611)
T ss_pred HHHHHHcChHHHHHHHhHHHHhhC----CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhc
Confidence 334455566667777776666654 555666666666777777777666666666654 4 5678888877777778
Q ss_pred ChHHHHHHHHhhhcCCCcc---HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCc-chHhcHHHHhhcccchHHHHHHHH
Q 002834 540 SADEAFMTFSRIYARDLTP---WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDA-VTIMSLLPVCSQMASVHLLRQCHG 615 (875)
Q Consensus 540 ~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~a~~~~~~~~~a~~~~~ 615 (875)
+..+|.+.|.+....|+.- |..+...|+-.|..++|+..+....+. -|.. .-+..+---|...+..+.|.+++.
T Consensus 327 k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~kLAe~Ff~ 404 (611)
T KOG1173|consen 327 KYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLKLAEKFFK 404 (611)
T ss_pred CcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHHHHHHHHH
Confidence 8888888888776555444 888888888888888888777766542 1111 111122223444555666666665
Q ss_pred HHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC----C--CCC
Q 002834 616 YVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLEL----G--VNP 689 (875)
Q Consensus 616 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g--~~p 689 (875)
.+....+.++.+.+.+.-.....+ .+.+|..+|+..+.. + ..-
T Consensus 405 ~A~ai~P~Dplv~~Elgvvay~~~-------------------------------~y~~A~~~f~~~l~~ik~~~~e~~~ 453 (611)
T KOG1173|consen 405 QALAIAPSDPLVLHELGVVAYTYE-------------------------------EYPEALKYFQKALEVIKSVLNEKIF 453 (611)
T ss_pred HHHhcCCCcchhhhhhhheeehHh-------------------------------hhHHHHHHHHHHHHHhhhccccccc
Confidence 555555555555555544444444 444555555444310 0 011
Q ss_pred ChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCCHHHHHHHHHH
Q 002834 690 DHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP-VEADCNVWGTLLGA 768 (875)
Q Consensus 690 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~ 768 (875)
-..+++.|..+|.+.+++++|+..+++... -.+-+..++..++-+|...|+++.|.+.+.+.. ..|+..+-..+++.
T Consensus 454 w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 454 WEPTLNNLGHAYRKLNKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKL 531 (611)
T ss_pred hhHHHHhHHHHHHHHhhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 234677788888888888898888888876 233456688888888888888888888887774 77877766666654
Q ss_pred H
Q 002834 769 C 769 (875)
Q Consensus 769 ~ 769 (875)
+
T Consensus 532 a 532 (611)
T KOG1173|consen 532 A 532 (611)
T ss_pred H
Confidence 3
No 50
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=1.1e-09 Score=110.76 Aligned_cols=256 Identities=11% Similarity=-0.025 Sum_probs=199.9
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhc
Q 002834 559 WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKC 638 (875)
Q Consensus 559 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 638 (875)
...-..-+...+++.+..+++....+. .++....+..-|.++...|+...-..+-..+++.-|..+..|-++.--|.-.
T Consensus 247 l~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i 325 (611)
T KOG1173|consen 247 LAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMI 325 (611)
T ss_pred HHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHh
Confidence 344455567788888888888887765 2445555555566667777777777777777777777888888888888888
Q ss_pred CCHHHHHHHhccCCCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHH
Q 002834 639 GSIFSASKIFQCHPQKD---VVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFR 715 (875)
Q Consensus 639 g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~ 715 (875)
|+.++|++.|.+...-| ...|-.....|+..|..++|+..+...-+. ++-....+..+.--|.+.+..+.|.++|.
T Consensus 326 ~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~ 404 (611)
T KOG1173|consen 326 GKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFK 404 (611)
T ss_pred cCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHH
Confidence 99999999999876533 358999999999999999999999887764 33334444555567888999999999998
Q ss_pred HhHHHhCCCCCh-hHHHHHHHHhhcCCChHHHHHHHHhCC-----CCC----CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 002834 716 SIEKVQGIKPTP-EQYASLVDLLARGGQISDAYSLVNRMP-----VEA----DCNVWGTLLGACRIHHEVELGRVVANRL 785 (875)
Q Consensus 716 ~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 785 (875)
++.. +-|+. ..++-++-..-..+.+.+|..+|+... ..+ =.++|++|+.+|++.+.++.|+..++++
T Consensus 405 ~A~a---i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~a 481 (611)
T KOG1173|consen 405 QALA---IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKA 481 (611)
T ss_pred HHHh---cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 8854 77754 466677777777889999998887763 111 2356888999999999999999999999
Q ss_pred hcccCCCCccHHHHHHHHHhcCCchhHHHHHHHH
Q 002834 786 FEMEADNIGNYVVMSNLYAADARWDGVVEIRKLM 819 (875)
Q Consensus 786 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 819 (875)
+.+.|+++.+|-.+|-+|.-.|+.+.|++.+.+.
T Consensus 482 L~l~~k~~~~~asig~iy~llgnld~Aid~fhKa 515 (611)
T KOG1173|consen 482 LLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKA 515 (611)
T ss_pred HHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 9999999999999999999999999999976653
No 51
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.38 E-value=6.2e-10 Score=118.75 Aligned_cols=259 Identities=12% Similarity=0.018 Sum_probs=160.5
Q ss_pred HHHHhcCCHHHHHHHHHhhccC-CCcc--cHHHHHHHhhcCCChHHHHHHHHhhhcCCCcc---HHHHHHHHHHcCCchH
Q 002834 501 DAYAKCRNIKYAFNVFQSLLEK-RNLV--TFNPVISGYANCGSADEAFMTFSRIYARDLTP---WNLMIRVYAENDFPNQ 574 (875)
Q Consensus 501 ~~~~~~g~~~~A~~~~~~~~~~-p~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~ 574 (875)
..+...|+.+.|.+.+.+..+. |+.. ........+...|+++.|...++.+.+.+|.. +..+...|.+.|++++
T Consensus 126 ~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~ 205 (409)
T TIGR00540 126 EAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQA 205 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHH
Confidence 3444555555555555554432 3322 22223444555555555555555554443322 5555666677788887
Q ss_pred HHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC-
Q 002834 575 ALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ- 653 (875)
Q Consensus 575 A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 653 (875)
|.+++..+.+.++.+. ..+..+-. ..+..++..-......+...+..+..+.
T Consensus 206 a~~~l~~l~k~~~~~~-~~~~~l~~--------------------------~a~~~~l~~~~~~~~~~~L~~~~~~~p~~ 258 (409)
T TIGR00540 206 LDDIIDNMAKAGLFDD-EEFADLEQ--------------------------KAEIGLLDEAMADEGIDGLLNWWKNQPRH 258 (409)
T ss_pred HHHHHHHHHHcCCCCH-HHHHHHHH--------------------------HHHHHHHHHHHHhcCHHHHHHHHHHCCHH
Confidence 8887777777654322 11110000 0000111111112223344444554543
Q ss_pred --CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhH--HHHH-HHHhhcCcHHHHHHHHHHhHHHhCCCCChh
Q 002834 654 --KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVI--TAVL-SACSHAGLVDEGLEIFRSIEKVQGIKPTPE 728 (875)
Q Consensus 654 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~--~~ll-~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 728 (875)
.+...+..++..+...|+.++|.+++++..+. .||.... ..+. ......++.+.+.+.+++..+.....|+..
T Consensus 259 ~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ 336 (409)
T TIGR00540 259 RRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCC 336 (409)
T ss_pred HhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHH
Confidence 47788888999999999999999999999985 4554421 1122 233446788899999988877433333325
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHh--C-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 002834 729 QYASLVDLLARGGQISDAYSLVNR--M-PVEADCNVWGTLLGACRIHHEVELGRVVANRLFEM 788 (875)
Q Consensus 729 ~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 788 (875)
...+++..+.+.|++++|.+.++. . ...|++..+..+...+...|+.+.|.+++++.+.+
T Consensus 337 ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 337 INRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 667889999999999999999994 3 46899888889999999999999999999988654
No 52
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=8.7e-10 Score=109.27 Aligned_cols=218 Identities=8% Similarity=-0.015 Sum_probs=147.0
Q ss_pred HHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHH
Q 002834 567 AENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASK 646 (875)
Q Consensus 567 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 646 (875)
.-.|+.-.|...|+........++.. |.-+-.+|....+.++....|..+.+.++.++.+|..-..++.-.+++++|..
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 34556666666666665543222221 55555566666666666666666666666677777777777777888888888
Q ss_pred HhccCCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCC
Q 002834 647 IFQCHPQK---DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGI 723 (875)
Q Consensus 647 ~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 723 (875)
-|++...- ++..|-.+.-+..+.+++++++..|++.++. ++--...|+.....+...++++.|.+.|+.+.+ +
T Consensus 416 DF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~---L 491 (606)
T KOG0547|consen 416 DFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE---L 491 (606)
T ss_pred HHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh---h
Confidence 88876653 3345555555556777888888888888875 555566777777788888888888888888876 4
Q ss_pred CCC-------hhHHH--HHHHHhhcCCChHHHHHHHHhCC-CCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhcccC
Q 002834 724 KPT-------PEQYA--SLVDLLARGGQISDAYSLVNRMP-VEADC-NVWGTLLGACRIHHEVELGRVVANRLFEMEA 790 (875)
Q Consensus 724 ~p~-------~~~~~--~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 790 (875)
.|+ +..+. .++-.-. .+++.+|..++++.. .+|.. ..+.+|...-..+|+.++|++++++...+-.
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred ccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 444 11111 1111112 378888888888874 66654 6677888877888888888888888876643
No 53
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.34 E-value=9.2e-08 Score=94.74 Aligned_cols=459 Identities=11% Similarity=0.056 Sum_probs=269.4
Q ss_pred hhHHHHHhHhcCChhHHHHHhccCCC---CCeeeHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCChhhHHhHHHHhccC
Q 002834 184 GNSLTSMYAKRGLVHDAYSVFDSIED---KDVVSWNAVISGLSENKVLGDAFRLFSWMLTEPIKPNYATILNILPICASL 260 (875)
Q Consensus 184 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 260 (875)
|-.....=...++...|..+|++... +++..|---+..-.++..+..|..+++..... .|-
T Consensus 76 WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPR-------------- 139 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPR-------------- 139 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cch--------------
Confidence 33333333345566667777776654 34445555556666666777777777665532 221
Q ss_pred CccccccchhHHHHHHHHhcccCCchhHhhhHHHHhHhcCChhHHHHHhhhcC--CCCccchHHHHHHHHcCCCHHHHHH
Q 002834 261 DEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAELLFRRMK--SRDLVSWNAIIAGYASNDEWLKALN 338 (875)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~ 338 (875)
-...|..-+.+--..|++..|+++|+... +|+..+|++.|+.-.+.+.++.|..
T Consensus 140 ------------------------VdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~ 195 (677)
T KOG1915|consen 140 ------------------------VDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARS 195 (677)
T ss_pred ------------------------HHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHH
Confidence 11123333334445677778888887654 4778888888888777888888888
Q ss_pred HHHHHHHcCCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHhcCC-CCchhhHHHHHHHHHhcCCChhHHHHHHHhcCC
Q 002834 339 LFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIHGYFLRHPY-LEEDAAVGNALVSFYAKCSDMEAAYRTFLMICR 417 (875)
Q Consensus 339 ~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 417 (875)
+|++.+- +.|+..+|.--.+---+.|++..++.++...++.-. ......++.++...-.++..++.|.-+|+-...
T Consensus 196 IYerfV~---~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld 272 (677)
T KOG1915|consen 196 IYERFVL---VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALD 272 (677)
T ss_pred HHHHHhe---ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887765 558877777766666677777777777766554321 111111344444444445555555555543211
Q ss_pred ----C-CcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCc
Q 002834 418 ----R-DLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTE 492 (875)
Q Consensus 418 ----~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 492 (875)
. ....|......--+-|+.....+..-.= -.--++..++.+ +.+
T Consensus 273 ~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K---------------------------Rk~qYE~~v~~n----p~n 321 (677)
T KOG1915|consen 273 HIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK---------------------------RKFQYEKEVSKN----PYN 321 (677)
T ss_pred hcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh---------------------------hhhHHHHHHHhC----CCC
Confidence 1 1112222222222222221111111000 000011111111 344
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhhccC-CCc---ccHHHHH----H----HhhcCCChHHHHHHHHhhhc---CCCc
Q 002834 493 HNIGNAILDAYAKCRNIKYAFNVFQSLLEK-RNL---VTFNPVI----S----GYANCGSADEAFMTFSRIYA---RDLT 557 (875)
Q Consensus 493 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p~~---~~~~~l~----~----~~~~~~~~~~A~~~~~~~~~---~~~~ 557 (875)
-.++-..++.-...|+.+...++++..... |.. ..|.-.| + .-....+.+.+.++++...+ ....
T Consensus 322 YDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkF 401 (677)
T KOG1915|consen 322 YDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKF 401 (677)
T ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccc
Confidence 444555555566666777777777666553 211 1222111 1 11345667777777766543 2222
Q ss_pred c----HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHH
Q 002834 558 P----WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLH 633 (875)
Q Consensus 558 ~----~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 633 (875)
+ |......-.++.+...|.+++.... |..|...+|...|..-.+.+.++....+++..+..++.+-..+.....
T Consensus 402 tFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaE 479 (677)
T KOG1915|consen 402 TFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAE 479 (677)
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHH
Confidence 2 4555555577888888888887765 567888888888888888888888888888888888888888888888
Q ss_pred HhHhcCCHHHHHHHhccCCC-CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHh-----h
Q 002834 634 LYAKCGSIFSASKIFQCHPQ-KD----VVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACS-----H 703 (875)
Q Consensus 634 ~~~~~g~~~~A~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~-----~ 703 (875)
.-...|+.+.|..+|+-... |. ...|.+.|.--...|..++|..+++++++. .+....|.++..--. +
T Consensus 480 lE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~ 557 (677)
T KOG1915|consen 480 LETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASEGQ 557 (677)
T ss_pred HHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccccccc
Confidence 88888899999988886554 32 346777777777888899999999988874 344445555443111 2
Q ss_pred cC-----------cHHHHHHHHHHhHHH
Q 002834 704 AG-----------LVDEGLEIFRSIEKV 720 (875)
Q Consensus 704 ~g-----------~~~~a~~~~~~~~~~ 720 (875)
.| .+..|..+|+++...
T Consensus 558 ~~~~~~~~e~~~~~~~~AR~iferAn~~ 585 (677)
T KOG1915|consen 558 EDEDLAELEITDENIKRARKIFERANTY 585 (677)
T ss_pred cccchhhhhcchhHHHHHHHHHHHHHHH
Confidence 23 456777888777653
No 54
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=2.8e-06 Score=91.99 Aligned_cols=439 Identities=13% Similarity=0.136 Sum_probs=223.7
Q ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChhhH----------HHHHHHHHhcCC----
Q 002834 319 SWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVG----------KEIHGYFLRHPY---- 384 (875)
Q Consensus 319 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a----------~~~~~~~~~~~~---- 384 (875)
.-+-+..-.-+.++..--+..++.....| .-|..|++++.+.|..+++-.+. +.+=....++..
T Consensus 840 ~~deLv~EvEkRNRLklLlp~LE~~i~eG--~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~ 917 (1666)
T KOG0985|consen 840 PVDELVEEVEKRNRLKLLLPWLESLIQEG--SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLAC 917 (1666)
T ss_pred ChHHHHHHHHhhhhHHHHHHHHHHHHhcc--CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEE
Confidence 34455555566677777777777777777 46777888887777665442221 000011111100
Q ss_pred ---------------CCchhhHHHHHHHHHhcCCChhHHHHHHHh-----------c------CCCCcchHHHHHHHHhc
Q 002834 385 ---------------LEEDAAVGNALVSFYAKCSDMEAAYRTFLM-----------I------CRRDLISWNSMLDAFSE 432 (875)
Q Consensus 385 ---------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-----------~------~~~~~~~~~~li~~~~~ 432 (875)
...+. .+....+-+.+..+.+.-.+++.+ . ...|+...+.-+.++..
T Consensus 918 vaYerGqcD~elI~vcNeNS-lfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMt 996 (1666)
T KOG0985|consen 918 VAYERGQCDLELINVCNENS-LFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMT 996 (1666)
T ss_pred EeecccCCcHHHHHhcCchh-HHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHh
Confidence 00111 333333333333333332222211 1 11244444555566666
Q ss_pred cCChhHHHHHHHHHHHCCCC-CChhhHHHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHH
Q 002834 433 SGYNSQFLNLLNCMLMEGIR-PDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKY 511 (875)
Q Consensus 433 ~g~~~~a~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 511 (875)
.+-..+-++++++.+-.+.. ........++-.-+-..+...+.++...+-.... -.+.......+-+++
T Consensus 997 adLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa----------~~ia~iai~~~LyEE 1066 (1666)
T KOG0985|consen 997 ADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDA----------PDIAEIAIENQLYEE 1066 (1666)
T ss_pred cCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCc----------hhHHHHHhhhhHHHH
Confidence 66666666666665532211 1111111111111122233334444443333221 223334445555666
Q ss_pred HHHHHHhhccCCCcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCc
Q 002834 512 AFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDA 591 (875)
Q Consensus 512 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 591 (875)
|..+|+.... +..+.+.|+.-- +..+.|.+.-++..+ +..|+.+.++-.+.|...+|++-|-+. .|+
T Consensus 1067 AF~ifkkf~~--n~~A~~VLie~i---~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika------dDp 1133 (1666)
T KOG0985|consen 1067 AFAIFKKFDM--NVSAIQVLIENI---GSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA------DDP 1133 (1666)
T ss_pred HHHHHHHhcc--cHHHHHHHHHHh---hhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc------CCc
Confidence 6666665432 223333333322 344444444433322 234777777777888887777766442 355
Q ss_pred chHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCC
Q 002834 592 VTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGM 671 (875)
Q Consensus 592 ~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 671 (875)
..|..++..+.+.|.++.-..++.++.+.. ..+.+-..|+-+|++.+++.+-++.+.. ||+........-|...|.
T Consensus 1134 s~y~eVi~~a~~~~~~edLv~yL~MaRkk~-~E~~id~eLi~AyAkt~rl~elE~fi~g---pN~A~i~~vGdrcf~~~~ 1209 (1666)
T KOG0985|consen 1134 SNYLEVIDVASRTGKYEDLVKYLLMARKKV-REPYIDSELIFAYAKTNRLTELEEFIAG---PNVANIQQVGDRCFEEKM 1209 (1666)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhh-cCccchHHHHHHHHHhchHHHHHHHhcC---CCchhHHHHhHHHhhhhh
Confidence 677778888888888877777766655543 3455556777788888877776665432 455445555566666666
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHH
Q 002834 672 GKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVN 751 (875)
Q Consensus 672 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 751 (875)
++.|.-+|... ..|..|...+.+.|.+..|...-+++ -+..+|-.+..+|...+.+.-|.-.
T Consensus 1210 y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA-------ns~ktWK~VcfaCvd~~EFrlAQiC-- 1271 (1666)
T KOG0985|consen 1210 YEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA-------NSTKTWKEVCFACVDKEEFRLAQIC-- 1271 (1666)
T ss_pred hHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHHHHhchhhhhHHHhc--
Confidence 66665555432 33455555566666666655544333 1234555555555555444333210
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHh
Q 002834 752 RMPVEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAA 805 (875)
Q Consensus 752 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 805 (875)
.+..---..-...|+..|...|-+++-+..++..+.++.-+-+.+.-|+-+|++
T Consensus 1272 GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1272 GLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence 000111122344556666666666666666666666666666666666655554
No 55
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=2.9e-06 Score=91.97 Aligned_cols=614 Identities=13% Similarity=0.146 Sum_probs=353.3
Q ss_pred HHHHHhhccCCcchhhhHHHHHHHhCCCCCcchhhHHHHHhHhcCChhHHHHHhccCCC--CCeeeHHHHHHHHHcCCCc
Q 002834 151 IVLSACARLGGIFAGKSLHAYVIKFGLERHTLVGNSLTSMYAKRGLVHDAYSVFDSIED--KDVVSWNAVISGLSENKVL 228 (875)
Q Consensus 151 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~ 228 (875)
.++..++..|.++.+.-. ..+.|..||.. .++....+ -++|.+.++...|.+ +....++.+...+...+..
T Consensus 486 KVi~cfAE~Gqf~KiilY---~kKvGyTPdym---flLq~l~r-~sPD~~~qFa~~l~Q~~~~~~die~I~DlFme~N~i 558 (1666)
T KOG0985|consen 486 KVIQCFAETGQFKKIILY---AKKVGYTPDYM---FLLQQLKR-SSPDQALQFAMMLVQDEEPLADIEQIVDLFMELNLI 558 (1666)
T ss_pred HHHHHHHHhcchhHHHHH---HHHcCCCccHH---HHHHHHHc-cChhHHHHHHHHhhccCCCcccHHHHHHHHHHHHhh
Confidence 445555555555544333 45678888754 44555555 567888887777765 4455677777777777777
Q ss_pred chHHHHHHHHHhCCCCCChhhHHh-HHHHhccCCccccccchhHHHHHHHHhcccCCchhHhhhHHHHhHhcCChhHHHH
Q 002834 229 GDAFRLFSWMLTEPIKPNYATILN-ILPICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAEL 307 (875)
Q Consensus 229 ~~a~~l~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 307 (875)
..+..++-...+. -.|+....-+ +|.. .+..+-++.+.++..+.. +..-+..+.+.|.+.|-...|.+
T Consensus 559 Qq~TSFLLdaLK~-~~Pd~g~LQTrLLE~--------NL~~aPqVADAILgN~mF--tHyDra~IAqLCEKAGL~qraLe 627 (1666)
T KOG0985|consen 559 QQCTSFLLDALKL-NSPDEGHLQTRLLEM--------NLVHAPQVADAILGNDMF--THYDRAEIAQLCEKAGLLQRALE 627 (1666)
T ss_pred hhhHHHHHHHhcC-CChhhhhHHHHHHHH--------HhccchHHHHHHHhcccc--ccccHHHHHHHHHhcchHHHHHH
Confidence 7777776665542 3454322211 1111 122223333333333222 23337778889999999999999
Q ss_pred HhhhcCC--CCccch----HHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHh
Q 002834 308 LFRRMKS--RDLVSW----NAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIHGYFLR 381 (875)
Q Consensus 308 ~~~~~~~--~~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 381 (875)
.+..+.. +.++.- ---+..|.-.-.++.+++.++.|...+ ++-|..+...+..-|...-..+...++|+....
T Consensus 628 hytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~N-irqNlQi~VQvatky~eqlg~~~li~lFE~fks 706 (1666)
T KOG0985|consen 628 HYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSAN-IRQNLQIVVQVATKYHEQLGAQALIELFESFKS 706 (1666)
T ss_pred hcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhcc
Confidence 8887763 111111 011234555567899999999999988 888877766666655554444444444443322
Q ss_pred c-----------CCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcCC-------------------C-----CcchH---
Q 002834 382 H-----------PYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICR-------------------R-----DLISW--- 423 (875)
Q Consensus 382 ~-----------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------------~-----~~~~~--- 423 (875)
. ++..|+. +.-..|.+.++.|++.+.+++.++-.- | |..-+
T Consensus 707 ~eGL~yfLgSivn~seDpe-vh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhd 785 (1666)
T KOG0985|consen 707 YEGLYYFLGSIVNFSEDPE-VHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHD 785 (1666)
T ss_pred chhHHHHHHHHhccccCch-HHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHH
Confidence 1 2233333 667788999999999998887765411 1 11111
Q ss_pred ----------HHHHHHHhccCChhHHHHHHHHHHHCCCCCC-----------hhhHHHHHHHhhccCchhhHHHHHHHHH
Q 002834 424 ----------NSMLDAFSESGYNSQFLNLLNCMLMEGIRPD-----------SITILTIIHFCTTVLREGMVKETHGYLI 482 (875)
Q Consensus 424 ----------~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-----------~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 482 (875)
...|..|.+.=++...-.+...+++-.+.-+ .+....+..-+-+.++.......++..+
T Consensus 786 lvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i 865 (1666)
T KOG0985|consen 786 LVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLI 865 (1666)
T ss_pred HHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 1123334433333222222222222111100 0111222333444555555666666666
Q ss_pred HhcCCCCCCchhHHHHHHHHHHhcCCHHHHHH---------HHHhhccCCCc----ccH------HHHHHHh--------
Q 002834 483 KTGLLLGDTEHNIGNAILDAYAKCRNIKYAFN---------VFQSLLEKRNL----VTF------NPVISGY-------- 535 (875)
Q Consensus 483 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~---------~~~~~~~~p~~----~~~------~~l~~~~-------- 535 (875)
..| ..++.++|+|...|..+++-.+-.- +..+.-++.|+ ++| ..+|+.|
T Consensus 866 ~eG----~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~ 941 (1666)
T KOG0985|consen 866 QEG----SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKS 941 (1666)
T ss_pred hcc----CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHH
Confidence 667 6788899999888876655433210 11111111011 111 1122222
Q ss_pred -----hcCCChHHHHHH-----------HHhh------hcCCCccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcch
Q 002834 536 -----ANCGSADEAFMT-----------FSRI------YARDLTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVT 593 (875)
Q Consensus 536 -----~~~~~~~~A~~~-----------~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 593 (875)
.+..+.+.=.++ .+.. ...++...+.-++++...+-+.+-+++++++.-. |+..+
T Consensus 942 ~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~---~S~Fs 1018 (1666)
T KOG0985|consen 942 QARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLD---NSVFS 1018 (1666)
T ss_pred HHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcC---Ccccc
Confidence 222232221111 2222 2235666888999999999999999999998643 33222
Q ss_pred ----HhcHHHHhhcccchHHHHHHHHHHHHh-cCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC---------------
Q 002834 594 ----IMSLLPVCSQMASVHLLRQCHGYVIRA-CFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ--------------- 653 (875)
Q Consensus 594 ----~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------- 653 (875)
...++-.-+-..+... +.+++.+. +.+.+.+. ......+-+++|..+|++...
T Consensus 1019 e~~nLQnLLiLtAikad~tr---Vm~YI~rLdnyDa~~ia----~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~l 1091 (1666)
T KOG0985|consen 1019 ENRNLQNLLILTAIKADRTR---VMEYINRLDNYDAPDIA----EIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSL 1091 (1666)
T ss_pred cchhhhhhHHHHHhhcChHH---HHHHHHHhccCCchhHH----HHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhH
Confidence 2222211111122222 22222222 11111111 112222333444444432211
Q ss_pred ----------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCC
Q 002834 654 ----------KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGI 723 (875)
Q Consensus 654 ----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 723 (875)
..+..|..+..+-.+.|...+|++-|-+ .-|...|.-++..+.+.|.+++-.+++..+++ ..-
T Consensus 1092 dRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRk-k~~ 1164 (1666)
T KOG0985|consen 1092 DRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARK-KVR 1164 (1666)
T ss_pred HHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH-hhc
Confidence 2345799999999999999999988755 24567899999999999999999999976655 455
Q ss_pred CCChhHHHHHHHHhhcCCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHH
Q 002834 724 KPTPEQYASLVDLLARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLY 803 (875)
Q Consensus 724 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 803 (875)
.|... +.|+-+|++.+++.|-.+++. -|+..-......-|...|.++.|+-.|. +.+-|..|+..+
T Consensus 1165 E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~La~TL 1230 (1666)
T KOG0985|consen 1165 EPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYS--------NVSNFAKLASTL 1230 (1666)
T ss_pred Cccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHH--------HhhhHHHHHHHH
Confidence 66555 458889999999998777765 4777777888899999999999887776 445577888888
Q ss_pred HhcCCchhHHHHHHHH
Q 002834 804 AADARWDGVVEIRKLM 819 (875)
Q Consensus 804 ~~~g~~~~A~~~~~~~ 819 (875)
...|++..|...-++.
T Consensus 1231 V~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1231 VYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHHHHHHHHHHHhhhc
Confidence 8888888887754443
No 56
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1.6e-08 Score=98.24 Aligned_cols=137 Identities=12% Similarity=0.100 Sum_probs=108.7
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHH-HHH-hhcCcHHHHHHHHHHhHHHhCCCCChh-HHH
Q 002834 655 DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVL-SAC-SHAGLVDEGLEIFRSIEKVQGIKPTPE-QYA 731 (875)
Q Consensus 655 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll-~a~-~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~ 731 (875)
+..+|..|+.+|...|++.+|.-+-+...+. ++-+..+...+. ..| .....-++|.+++++..+ +.|+-. ...
T Consensus 367 rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~ 442 (564)
T KOG1174|consen 367 RLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVN 442 (564)
T ss_pred hHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHH
Confidence 5567888888888888888888877776654 445555655443 222 233456889999988755 788854 778
Q ss_pred HHHHHhhcCCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCcc
Q 002834 732 SLVDLLARGGQISDAYSLVNRMP-VEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGN 795 (875)
Q Consensus 732 ~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 795 (875)
.+.+.+.+.|+.++++.++++.. ..||....+.|.......+.+.+|...|..++.++|++-.+
T Consensus 443 ~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 443 LIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred HHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 88999999999999999999874 78899999999999999999999999999999999987554
No 57
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.32 E-value=2.4e-06 Score=89.25 Aligned_cols=556 Identities=14% Similarity=0.068 Sum_probs=298.1
Q ss_pred HHHHhhccCCcchhhhHHHHHHHhCCCCCcchhhHHHHHhHhcCChhHHHHHhccCCCCCeeeHHHHHHHHHcCCCcchH
Q 002834 152 VLSACARLGGIFAGKSLHAYVIKFGLERHTLVGNSLTSMYAKRGLVHDAYSVFDSIEDKDVVSWNAVISGLSENKVLGDA 231 (875)
Q Consensus 152 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 231 (875)
.+.+......+..|..+++.+..... -.--|..+.+-|+..|+++.|.++|-+.. .++--|..|.++|+|+.|
T Consensus 738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHH
Confidence 34455666777888888877665532 22356777788999999999999987643 355668889999999999
Q ss_pred HHHHHHHHhCCCCCChhhHHhHHHHhccCCccccccchhHHHHHHHHhcccCCchhHhhhHHHHhHhcCChhHHHHHhhh
Q 002834 232 FRLFSWMLTEPIKPNYATILNILPICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAELLFRR 311 (875)
Q Consensus 232 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 311 (875)
.++-.+.. .|.. ....|-+-..-+-+.|++.+|.+++-.
T Consensus 811 ~kla~e~~----~~e~-------------------------------------t~~~yiakaedldehgkf~eaeqlyit 849 (1636)
T KOG3616|consen 811 FKLAEECH----GPEA-------------------------------------TISLYIAKAEDLDEHGKFAEAEQLYIT 849 (1636)
T ss_pred HHHHHHhc----Cchh-------------------------------------HHHHHHHhHHhHHhhcchhhhhheeEE
Confidence 98876653 2221 344455555556678999999999988
Q ss_pred cCCCCccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCC--hhhHHHHHHHHhccCChhhHHHHHHHHHhcCCCCchh
Q 002834 312 MKSRDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPD--SVTLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEEDA 389 (875)
Q Consensus 312 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 389 (875)
+.+|+. .|..|-+.|..+..+++..+- .|| ..|-..+-.-+-..|++..|...|-. .|
T Consensus 850 i~~p~~-----aiqmydk~~~~ddmirlv~k~------h~d~l~dt~~~f~~e~e~~g~lkaae~~fle---a~------ 909 (1636)
T KOG3616|consen 850 IGEPDK-----AIQMYDKHGLDDDMIRLVEKH------HGDHLHDTHKHFAKELEAEGDLKAAEEHFLE---AG------ 909 (1636)
T ss_pred ccCchH-----HHHHHHhhCcchHHHHHHHHh------ChhhhhHHHHHHHHHHHhccChhHHHHHHHh---hh------
Confidence 888874 477888889999888887663 333 23455566667777888887766533 22
Q ss_pred hHHHHHHHHHhcCCChhHHHHHHHhcCCCCcc-----hHHH-------------------HHHHHhccCChhHHHHHHHH
Q 002834 390 AVGNALVSFYAKCSDMEAAYRTFLMICRRDLI-----SWNS-------------------MLDAFSESGYNSQFLNLLNC 445 (875)
Q Consensus 390 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~-------------------li~~~~~~g~~~~a~~~~~~ 445 (875)
-+.+-+++|...+-+++|.++-+.-...|.. .|.. -|...+.++-++-|.++-+-
T Consensus 910 -d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari 988 (1636)
T KOG3616|consen 910 -DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARI 988 (1636)
T ss_pred -hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHH
Confidence 5677888888888888888887654333221 1211 11122233333333333322
Q ss_pred HHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHHHhcCCCCC-----CchhHH---------HHHHHHHHhcCCHHH
Q 002834 446 MLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGD-----TEHNIG---------NAILDAYAKCRNIKY 511 (875)
Q Consensus 446 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~---------~~li~~~~~~g~~~~ 511 (875)
..+.. .|... .-+...+-..|+++.+.+-+-+.++.+..... |+..-. ...+.++.+.+++..
T Consensus 989 ~~k~k-~~~vh--lk~a~~ledegk~edaskhyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~ 1065 (1636)
T KOG3616|consen 989 AAKDK-MGEVH--LKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAA 1065 (1636)
T ss_pred hhhcc-Cccch--hHHhhhhhhccchhhhhHhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHH
Confidence 22211 11111 11112234556666666555555443221000 110000 122345555556666
Q ss_pred HHHHHHhhccCCCcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCc
Q 002834 512 AFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDA 591 (875)
Q Consensus 512 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 591 (875)
|.++-+.--...-...++--..+....|++.+|+.++-+..+++.. ++.|...+-|.+|+++-+.- -|..
T Consensus 1066 aervae~h~~~~l~dv~tgqar~aiee~d~~kae~fllrankp~i~-----l~yf~e~~lw~dalri~kdy-----lp~q 1135 (1636)
T KOG3616|consen 1066 AERVAEAHCEDLLADVLTGQARGAIEEGDFLKAEGFLLRANKPDIA-----LNYFIEAELWPDALRIAKDY-----LPHQ 1135 (1636)
T ss_pred HHHHHHhhChhhhHHHHhhhhhccccccchhhhhhheeecCCCchH-----HHHHHHhccChHHHHHHHhh-----ChhH
Confidence 6555443222111122333344455667777777777665555532 34455666666666554332 1110
Q ss_pred chHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC------------------
Q 002834 592 VTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ------------------ 653 (875)
Q Consensus 592 ~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------ 653 (875)
.. + .-.++-....+.|-..+..+..-..-....|++..|...+-++..
T Consensus 1136 ~a---~-----------iqeeyek~~~k~gargvd~fvaqak~weq~gd~rkav~~~lkinrdst~nd~l~e~~~~kaad 1201 (1636)
T KOG3616|consen 1136 AA---A-----------IQEEYEKEALKKGARGVDGFVAQAKEWEQAGDWRKAVDALLKINRDSTDNDALAEHCTEKAAD 1201 (1636)
T ss_pred HH---H-----------HHHHHHHHHHhccccccHHHHHHHHHHHhcccHHHHHHHHhhhccCCCCcHHHHHHHHHHHHh
Confidence 00 0 001122223333433444444444445556666666655555432
Q ss_pred ---------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCC
Q 002834 654 ---------KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIK 724 (875)
Q Consensus 654 ---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 724 (875)
.|.....+...++...|..+.|.+++--.-. -.-.+.+++....|.+|.++-++..- ...
T Consensus 1202 l~ikfl~~d~nme~i~aa~~al~~~~~~e~aael~l~f~~---------~keaida~~~~eewakakqvake~~p--~~~ 1270 (1636)
T KOG3616|consen 1202 LSIKFLMGDENMEVIGAAGGALDEAGCHEAAAELLLLFDL---------SKEAIDAFCEAEEWAKAKQVAKELDP--EME 1270 (1636)
T ss_pred hhhhhcCCccchhhHHhcchhhhcccccHHHHHHHHHhhh---------HHHHHHHHHhHHHHHHHHHHHHHhCc--hhh
Confidence 1112222222233333333333333321100 11235667777777766665443321 111
Q ss_pred CChh-H------------------HHHHHHHhhcCCChHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCChhHHHHHHHH
Q 002834 725 PTPE-Q------------------YASLVDLLARGGQISDAYSLVNRMPVEADCNVWGTLLGA-CRIHHEVELGRVVANR 784 (875)
Q Consensus 725 p~~~-~------------------~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~ 784 (875)
|... + .-.-++.+..+++|++|++--++-..+|-..-|-.+-.+ +...|+..++..++++
T Consensus 1271 ~~idk~yke~lknegkl~eli~vdviaaidl~ien~qwdk~idtak~qnykpil~kyva~yaa~li~~~d~aq~lal~~q 1350 (1636)
T KOG3616|consen 1271 DEIDKHYKEFLKNEGKLDELIDVDVIAAIDLMIENDQWDKAIDTAKKQNYKPILDKYVALYAAHLIHEGDLAQALALLEQ 1350 (1636)
T ss_pred HHHHHHHHHHHhccCccccccchhHHHHHHHHHhcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 1111 1 123467888899999998887776666655445544444 3456888888888776
Q ss_pred Hh-cccCCCCccHHHHH-HHHHhcC-CchhHHH
Q 002834 785 LF-EMEADNIGNYVVMS-NLYAADA-RWDGVVE 814 (875)
Q Consensus 785 ~~-~~~p~~~~~~~~l~-~~~~~~g-~~~~A~~ 814 (875)
-- -.+|.|-.+|-.+- ...++-| ++++|-.
T Consensus 1351 ~ga~anpanfniyk~i~ed~lakpgt~~~eay~ 1383 (1636)
T KOG3616|consen 1351 HGAPANPANFNIYKLIFEDMLAKPGTNCAEAYH 1383 (1636)
T ss_pred hCCCCCcccccHHHHHHHHHhcCCCcchHHHHH
Confidence 42 23565655555433 3333333 5555544
No 58
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.32 E-value=5.3e-08 Score=101.19 Aligned_cols=475 Identities=13% Similarity=0.079 Sum_probs=252.4
Q ss_pred CCchHHHHhhccCCCCCchhHHHHHHHHhcCCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHhhccCCcchhhhHHHH
Q 002834 92 GVIDDCYKLFGQVDNTDPVTWNILLSGFACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSACARLGGIFAGKSLHAY 171 (875)
Q Consensus 92 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 171 (875)
.++.+|..+|-+-. + -...|..|-... +|++++.+-+. .| .+.-...-.+-++++...|.-+.|-++
T Consensus 545 kkfk~ae~ifleqn--~---te~aigmy~~lh-kwde~i~lae~---~~-~p~~eklk~sy~q~l~dt~qd~ka~el--- 611 (1636)
T KOG3616|consen 545 KKFKEAEMIFLEQN--A---TEEAIGMYQELH-KWDEAIALAEA---KG-HPALEKLKRSYLQALMDTGQDEKAAEL--- 611 (1636)
T ss_pred hhhhHHHHHHHhcc--c---HHHHHHHHHHHH-hHHHHHHHHHh---cC-ChHHHHHHHHHHHHHHhcCchhhhhhh---
Confidence 34666766663211 1 122344444444 66666554332 23 222222333445555555555444433
Q ss_pred HHHhCCCCCcchhhHHHHHhHhcCChhHHHHHhcc--CCCCCeeeHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCChhh
Q 002834 172 VIKFGLERHTLVGNSLTSMYAKRGLVHDAYSVFDS--IEDKDVVSWNAVISGLSENKVLGDAFRLFSWMLTEPIKPNYAT 249 (875)
Q Consensus 172 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t 249 (875)
+.+.--..+-|..|.+.|.+-.|.+.-.. ..-.|......+..++.+..-+++|-.+|+.+.. |+
T Consensus 612 ------k~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d----~d--- 678 (1636)
T KOG3616|consen 612 ------KESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD----FD--- 678 (1636)
T ss_pred ------ccccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC----HH---
Confidence 11222234567888888888777665422 1223444445555555555566666666666542 11
Q ss_pred HHhHHHHhccCCccccccchhHHHHHHHHhcccCCchh-HhhhHHHHhHhcCChhHHHHHhhhcCCCCccchHHHHHHHH
Q 002834 250 ILNILPICASLDEDVGYFFGREIHCYVLRRAELIADVS-VCNALVSFYLRFGRTEEAELLFRRMKSRDLVSWNAIIAGYA 328 (875)
Q Consensus 250 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 328 (875)
..+..+.+.. .+..+.++-+... +. .+. .-..-...+...|+++.|...|-+.. ..-..|.+-.
T Consensus 679 --kale~fkkgd---af~kaielarfaf----p~-evv~lee~wg~hl~~~~q~daainhfiea~-----~~~kaieaai 743 (1636)
T KOG3616|consen 679 --KALECFKKGD---AFGKAIELARFAF----PE-EVVKLEEAWGDHLEQIGQLDAAINHFIEAN-----CLIKAIEAAI 743 (1636)
T ss_pred --HHHHHHHccc---HHHHHHHHHHhhC----cH-HHhhHHHHHhHHHHHHHhHHHHHHHHHHhh-----hHHHHHHHHh
Confidence 1111111111 1222222111110 00 011 01111222334566666665554331 1122344556
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhHH
Q 002834 329 SNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAA 408 (875)
Q Consensus 329 ~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 408 (875)
....|.+|+.+++.++.+. .-..-|..+...|+..|+++.|.++|-.. + .++-.|.+|.+.|++++|
T Consensus 744 ~akew~kai~ildniqdqk---~~s~yy~~iadhyan~~dfe~ae~lf~e~---~-------~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQK---TASGYYGEIADHYANKGDFEIAEELFTEA---D-------LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhc---cccccchHHHHHhccchhHHHHHHHHHhc---c-------hhHHHHHHHhccccHHHH
Confidence 7788999999998887754 44455777888888999999988887532 1 567788999999999999
Q ss_pred HHHHHhcCCC--CcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHHHhcC
Q 002834 409 YRTFLMICRR--DLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGL 486 (875)
Q Consensus 409 ~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 486 (875)
.++-++...| .+..|-+-..-+-.+|++.+|.++|-... .|+. .|..|-+.|..+...++.+...-
T Consensus 811 ~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~--- 878 (1636)
T KOG3616|consen 811 FKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHG--- 878 (1636)
T ss_pred HHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhCh---
Confidence 9998887665 34456666667778888888887775432 2332 23445555555544444332211
Q ss_pred CCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCccHHHHHHHH
Q 002834 487 LLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVY 566 (875)
Q Consensus 487 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~ 566 (875)
..-..+...+..-|-..|++..|..-|-+.. -|.+.++.|..++-|++|.++-+.--..+.. ..++-..
T Consensus 879 ---d~l~dt~~~f~~e~e~~g~lkaae~~flea~------d~kaavnmyk~s~lw~dayriaktegg~n~~--k~v~flw 947 (1636)
T KOG3616|consen 879 ---DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG------DFKAAVNMYKASELWEDAYRIAKTEGGANAE--KHVAFLW 947 (1636)
T ss_pred ---hhhhHHHHHHHHHHHhccChhHHHHHHHhhh------hHHHHHHHhhhhhhHHHHHHHHhccccccHH--HHHHHHH
Confidence 1112333455666677788888877665432 3556667777777777776665432211111 1122222
Q ss_pred HHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHH
Q 002834 567 AENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASK 646 (875)
Q Consensus 567 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 646 (875)
++.=--+.|.+++++. |+ ...-+.-.+..+.++.+..+-....+.... .+...+...+...|++++|-+
T Consensus 948 aksiggdaavkllnk~---gl------l~~~id~a~d~~afd~afdlari~~k~k~~--~vhlk~a~~ledegk~edask 1016 (1636)
T KOG3616|consen 948 AKSIGGDAAVKLLNKH---GL------LEAAIDFAADNCAFDFAFDLARIAAKDKMG--EVHLKLAMFLEDEGKFEDASK 1016 (1636)
T ss_pred HHhhCcHHHHHHHHhh---hh------HHHHhhhhhcccchhhHHHHHHHhhhccCc--cchhHHhhhhhhccchhhhhH
Confidence 3333334556665541 10 111223344556666666665555544433 334445556778899999988
Q ss_pred HhccCCCC
Q 002834 647 IFQCHPQK 654 (875)
Q Consensus 647 ~~~~~~~~ 654 (875)
.|-+..+.
T Consensus 1017 hyveaikl 1024 (1636)
T KOG3616|consen 1017 HYVEAIKL 1024 (1636)
T ss_pred hhHHHhhc
Confidence 88776653
No 59
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.31 E-value=7.7e-12 Score=126.59 Aligned_cols=91 Identities=20% Similarity=0.172 Sum_probs=33.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhh
Q 002834 659 LTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLA 738 (875)
Q Consensus 659 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 738 (875)
.+.++..+...|+.+++.++++...+.. +.|...+..+..++...|+.++|+.+|++..+. .+.|+.....+++++.
T Consensus 183 ~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~~~~~~a~~l~ 259 (280)
T PF13429_consen 183 RNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--NPDDPLWLLAYADALE 259 (280)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc--cccccccccccccccc
Confidence 3344444444444444444444444431 233333444444555555555555555554431 1223444455555555
Q ss_pred cCCChHHHHHHHHh
Q 002834 739 RGGQISDAYSLVNR 752 (875)
Q Consensus 739 ~~g~~~~A~~~~~~ 752 (875)
..|+.++|.++..+
T Consensus 260 ~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 260 QAGRKDEALRLRRQ 273 (280)
T ss_dssp --------------
T ss_pred cccccccccccccc
Confidence 55555555555443
No 60
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=2e-08 Score=95.40 Aligned_cols=468 Identities=13% Similarity=0.090 Sum_probs=232.6
Q ss_pred HHHHhHhcCChhHHHHHhhhcCC---CCccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCC
Q 002834 292 LVSFYLRFGRTEEAELLFRRMKS---RDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKN 368 (875)
Q Consensus 292 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~ 368 (875)
+..++.+.|++++|...+..+.+ ++...|-.+.-.+.-.|.+.+|..+-... .-++-....++...-+.++
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka------~k~pL~~RLlfhlahklnd 136 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA------PKTPLCIRLLFHLAHKLND 136 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHhCc
Confidence 45667778888888888877654 34455655655556667777777665442 1223333344444555666
Q ss_pred hhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcCCC--CcchHHH-HHHHHhccCChhHHHHHHHH
Q 002834 369 LKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRR--DLISWNS-MLDAFSESGYNSQFLNLLNC 445 (875)
Q Consensus 369 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~-li~~~~~~g~~~~a~~~~~~ 445 (875)
-++...+++.+...- .-.-+|..+.-..-.+.+|.++++++... +-...|. +.-+|.+..-++-+.++++-
T Consensus 137 Ek~~~~fh~~LqD~~------EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~v 210 (557)
T KOG3785|consen 137 EKRILTFHSSLQDTL------EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKV 210 (557)
T ss_pred HHHHHHHHHHHhhhH------HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHH
Confidence 666666655543321 01233344433344566777777766443 3333443 33345556666666666665
Q ss_pred HHHCCCCCChhhHHHHHHHhhccC--chhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCC
Q 002834 446 MLMEGIRPDSITILTIIHFCTTVL--REGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKR 523 (875)
Q Consensus 446 m~~~g~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 523 (875)
.++. .||+ |+..=+.+|..-+ .-..+++-.+.+.+.+- .. ++.+..+.+.
T Consensus 211 YL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~---~~-----------------~~f~~~l~rH----- 262 (557)
T KOG3785|consen 211 YLRQ--FPDS-TIAKNLKACNLFRLINGRTAEDEKKELADNID---QE-----------------YPFIEYLCRH----- 262 (557)
T ss_pred HHHh--CCCc-HHHHHHHHHHHhhhhccchhHHHHHHHHhccc---cc-----------------chhHHHHHHc-----
Confidence 5543 2333 2222223332211 11112222222222111 00 0000000000
Q ss_pred CcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhc
Q 002834 524 NLVTFNPVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQ 603 (875)
Q Consensus 524 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~ 603 (875)
+. .--.+-+.|++++-.+.+.=+..-..|+-.|.+.++..+|..+.+++ .|+. .+..++.+...
T Consensus 263 NL----------VvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl-----~Ptt-P~EyilKgvv~ 326 (557)
T KOG3785|consen 263 NL----------VVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDL-----DPTT-PYEYILKGVVF 326 (557)
T ss_pred Ce----------EEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhc-----CCCC-hHHHHHHHHHH
Confidence 00 01123344555544443333333444555556677777776666554 2221 11122221111
Q ss_pred ccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC-----CChhhHHHHHHHHHHcCChHHHHHH
Q 002834 604 MASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ-----KDVVMLTAMIGGYAMHGMGKAALKV 678 (875)
Q Consensus 604 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~ 678 (875)
.++..-......+.-|.+.|+-... ..+.--.++.+++.-..++++.+..
T Consensus 327 -------------------------aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~Y 381 (557)
T KOG3785|consen 327 -------------------------AALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTY 381 (557)
T ss_pred -------------------------HHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 0011111111222333333332211 1222344555666666677777777
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCCCCCC
Q 002834 679 FSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMPVEAD 758 (875)
Q Consensus 679 ~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~ 758 (875)
++....- +..|...-..+..|.+..|.+.+|.++|-++.. ..++-+......|..+|.+.|+.+-|.+++-++..+.+
T Consensus 382 lnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~-~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e 459 (557)
T KOG3785|consen 382 LNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISG-PEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSE 459 (557)
T ss_pred HHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcC-hhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchh
Confidence 7777664 333333333466788888888888888876643 22333333344566888888888888888887754444
Q ss_pred H-HHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhCCCcCCCceeEEEeCC
Q 002834 759 C-NVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTRDLKKPAACSWIEVER 837 (875)
Q Consensus 759 ~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~ 837 (875)
. .....+.+-|.+.+.+--|-+++..+-.++|.. ..| .|+-.....++..+......+.|+...-|
T Consensus 460 ~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p-EnW---------eGKRGACaG~f~~l~~~~~~~~p~~~~rE--- 526 (557)
T KOG3785|consen 460 RFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP-ENW---------EGKRGACAGLFRQLANHKTDPIPISQMRE--- 526 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc-ccc---------CCccchHHHHHHHHHcCCCCCCchhHHHH---
Confidence 4 334455577888888888888888888888743 222 24444445566666554444444422222
Q ss_pred EEeEEecCCCCCCChHHHHH
Q 002834 838 KNNAFMAGDYSHPRRDMIYW 857 (875)
Q Consensus 838 ~~~~f~~~~~~~~~~~~~~~ 857 (875)
.+| ...++.|.+.+-..+
T Consensus 527 Vvh--llr~~~nsq~E~mik 544 (557)
T KOG3785|consen 527 VVH--LLRMKPNSQCEFMIK 544 (557)
T ss_pred HHH--HHHhCCCchHHHHHH
Confidence 223 334455555544333
No 61
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.29 E-value=2.8e-10 Score=112.72 Aligned_cols=196 Identities=11% Similarity=0.049 Sum_probs=162.5
Q ss_pred chHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 002834 625 VRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSAC 701 (875)
Q Consensus 625 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~ 701 (875)
...+..+...|...|++++|.+.+++..+ .+...+..+...+...|++++|++.+++..+.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 45566778888899999999999987654 346678888999999999999999999998853 34456677778889
Q ss_pred hhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHH
Q 002834 702 SHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGR 779 (875)
Q Consensus 702 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~ 779 (875)
...|++++|.+.++++.+..........+..++.++...|++++|.+.+++.. ..| +...+..+...+...|+++.|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999997632222234577788999999999999999998874 344 4577888888899999999999
Q ss_pred HHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 780 VVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 780 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
..++++++..|.++..+..++.++...|++++|..+.+.+..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999999898888899999999999999999998887754
No 62
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.29 E-value=7e-07 Score=92.14 Aligned_cols=423 Identities=12% Similarity=0.119 Sum_probs=234.6
Q ss_pred hhhhHHHHHHHccCCchHHHHhhccC----C-CCCchhHHHHHHHHhcCCCChhHHHHHHHHhHhcCCCCCCcchHHHHH
Q 002834 79 AVSKALLNLYAKCGVIDDCYKLFGQV----D-NTDPVTWNILLSGFACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVL 153 (875)
Q Consensus 79 ~~~~~l~~~~~~~g~~~~A~~~~~~~----~-~~~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ll 153 (875)
.++-..+....++|++...+..|+.. | ......|...|.-..+.+ -++-++++|.+..+ .++..-.--|
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~-lPets~rvyrRYLk-----~~P~~~eeyi 176 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHG-LPETSIRVYRRYLK-----VAPEAREEYI 176 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCC-ChHHHHHHHHHHHh-----cCHHHHHHHH
Confidence 34444455555666666666666553 1 123445766666666666 77788888887744 3344466667
Q ss_pred HHhhccCCcchhhhHHHHHHHhC------CCCCcchhhHHHHHhHhcCChh---HHHHHhccCCC--CC--eeeHHHHHH
Q 002834 154 SACARLGGIFAGKSLHAYVIKFG------LERHTLVGNSLTSMYAKRGLVH---DAYSVFDSIED--KD--VVSWNAVIS 220 (875)
Q Consensus 154 ~~~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~~~~--~~--~~~~~~li~ 220 (875)
..++..+++++|.+.+...+... .+.+...|..+.+..++.-+.- ...+++..+.. +| -..|+.|..
T Consensus 177 e~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 177 EYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLAD 256 (835)
T ss_pred HHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHH
Confidence 77777788888877777665332 2444556666666666543322 23334444443 23 246899999
Q ss_pred HHHcCCCcchHHHHHHHHHhCCCCCChhhHHhHHHHhccCCccccccchhHHHHHHHHhcccCCchhHhhhHHH-HhHhc
Q 002834 221 GLSENKVLGDAFRLFSWMLTEPIKPNYATILNILPICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVS-FYLRF 299 (875)
Q Consensus 221 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~-~~~~~ 299 (875)
-|.+.|.++.|..+|++..+. ..+...|..+..+++...+ ...+..+. .-...
T Consensus 257 YYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE------------------------~~~~~~me~a~~~~ 310 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEE------------------------SCVAAKMELADEES 310 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHH------------------------HHHHHHHhhhhhcc
Confidence 999999999999999998765 3345556666655543320 00011111 00011
Q ss_pred ------CChhHHHHHhhhcCCC---------------CccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHH
Q 002834 300 ------GRTEEAELLFRRMKSR---------------DLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVS 358 (875)
Q Consensus 300 ------g~~~~A~~~~~~~~~~---------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ 358 (875)
-+++-...-|+.+..+ ++..|..-+. +..|+..+-+..|.+..+. +.|-...
T Consensus 311 ~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~--vdP~ka~--- 383 (835)
T KOG2047|consen 311 GNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT--VDPKKAV--- 383 (835)
T ss_pred cChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc--cCcccCC---
Confidence 1233333334433321 2222322222 2345555666666665554 3343221
Q ss_pred HHHHHhccCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcCCCCcc-------hHHHHHHHHh
Q 002834 359 LLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRRDLI-------SWNSMLDAFS 431 (875)
Q Consensus 359 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~li~~~~ 431 (875)
..+.. .+..+...|-..|+++.|..+|++...-+-. .|......-.
T Consensus 384 --------------------------Gs~~~-Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemEl 436 (835)
T KOG2047|consen 384 --------------------------GSPGT-LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMEL 436 (835)
T ss_pred --------------------------CChhh-HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHH
Confidence 11222 7788888888899999999999887554322 4544555555
Q ss_pred ccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHH
Q 002834 432 ESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKY 511 (875)
Q Consensus 432 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 511 (875)
++.+++.|+.++++...- |.... +. +...+.+-+ .++ ..+..++...++..-..|-++.
T Consensus 437 rh~~~~~Al~lm~~A~~v---P~~~~----~~-~yd~~~pvQ-~rl------------hrSlkiWs~y~DleEs~gtfes 495 (835)
T KOG2047|consen 437 RHENFEAALKLMRRATHV---PTNPE----LE-YYDNSEPVQ-ARL------------HRSLKIWSMYADLEESLGTFES 495 (835)
T ss_pred hhhhHHHHHHHHHhhhcC---CCchh----hh-hhcCCCcHH-HHH------------HHhHHHHHHHHHHHHHhccHHH
Confidence 677788888877665432 33221 11 111111000 011 2233445666666677788888
Q ss_pred HHHHHHhhccCCCcccHHHHHH---HhhcCCChHHHHHHHHhhhcCCCcc-----HHHHHHHHHH---cCCchHHHHHHH
Q 002834 512 AFNVFQSLLEKRNLVTFNPVIS---GYANCGSADEAFMTFSRIYARDLTP-----WNLMIRVYAE---NDFPNQALSLFL 580 (875)
Q Consensus 512 A~~~~~~~~~~p~~~~~~~l~~---~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~l~~~~~~---~~~~~~A~~~~~ 580 (875)
...+++.+..- -+.|-..+++ -+-.+.-++++.+++++-...-..| |++.+.-+.+ ...++.|..+|+
T Consensus 496 tk~vYdriidL-riaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFE 574 (835)
T KOG2047|consen 496 TKAVYDRIIDL-RIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFE 574 (835)
T ss_pred HHHHHHHHHHH-hcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 88888888763 1222222221 2234455778888887765554444 6665555443 235677888888
Q ss_pred HHHHCCCCCC
Q 002834 581 KLQAQGMKPD 590 (875)
Q Consensus 581 ~m~~~g~~p~ 590 (875)
+..+ |.+|.
T Consensus 575 qaL~-~Cpp~ 583 (835)
T KOG2047|consen 575 QALD-GCPPE 583 (835)
T ss_pred HHHh-cCCHH
Confidence 8776 55554
No 63
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.27 E-value=2.5e-09 Score=104.01 Aligned_cols=271 Identities=12% Similarity=0.043 Sum_probs=163.6
Q ss_pred cCCHHHHHHHHHhhccCCC--cccHHHHHHHhhcCCChHHHHHHHHhhhcC--CCcc--HHHHHHHHHHcCCchHHHHHH
Q 002834 506 CRNIKYAFNVFQSLLEKRN--LVTFNPVISGYANCGSADEAFMTFSRIYAR--DLTP--WNLMIRVYAENDFPNQALSLF 579 (875)
Q Consensus 506 ~g~~~~A~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~--~~~l~~~~~~~~~~~~A~~~~ 579 (875)
.|++..|+++..+..+..+ ...|..-+.+--+.|+.+.+-..+.++.+. |... +-+........|+.+.|..-+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 5777777777776555322 233444444555556666666666666444 2222 555555566666666666666
Q ss_pred HHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCCC-----
Q 002834 580 LKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQK----- 654 (875)
Q Consensus 580 ~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 654 (875)
.++.+.+ +..+.+.......|.+.|++.+...++.++.+.
T Consensus 177 ~~ll~~~-----------------------------------pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~ 221 (400)
T COG3071 177 DQLLEMT-----------------------------------PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSD 221 (400)
T ss_pred HHHHHhC-----------------------------------cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCCh
Confidence 6655543 333334444444455555555555554444431
Q ss_pred ------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChh
Q 002834 655 ------DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPE 728 (875)
Q Consensus 655 ------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 728 (875)
...+|+.++.-....+..+.-...|++.-.+ .+-+...-.+++.-+...|+.++|.++.++..+ .+..|+
T Consensus 222 ~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk-~~~D~~-- 297 (400)
T COG3071 222 EEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALK-RQWDPR-- 297 (400)
T ss_pred HHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHH-hccChh--
Confidence 1235666666665555555555566655443 444555556667777888888888888888776 455555
Q ss_pred HHHHHHHHhhcCCChHHHH----HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHH
Q 002834 729 QYASLVDLLARGGQISDAY----SLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYA 804 (875)
Q Consensus 729 ~~~~l~~~~~~~g~~~~A~----~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 804 (875)
...++. ..+-++.+.=+ +.++..+. ++..+.+|...|.+++.+.+|...++.+++..|+ ...|..++.+|.
T Consensus 298 -L~~~~~-~l~~~d~~~l~k~~e~~l~~h~~--~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~ 372 (400)
T COG3071 298 -LCRLIP-RLRPGDPEPLIKAAEKWLKQHPE--DPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALD 372 (400)
T ss_pred -HHHHHh-hcCCCCchHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHH
Confidence 222222 23334433333 33344333 3477888888899999999999999988888884 556788899999
Q ss_pred hcCCchhHHHHHHHHH
Q 002834 805 ADARWDGVVEIRKLMK 820 (875)
Q Consensus 805 ~~g~~~~A~~~~~~~~ 820 (875)
+.|+.++|.++++.-.
T Consensus 373 ~~g~~~~A~~~r~e~L 388 (400)
T COG3071 373 QLGEPEEAEQVRREAL 388 (400)
T ss_pred HcCChHHHHHHHHHHH
Confidence 9999999988766543
No 64
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.25 E-value=3e-07 Score=97.13 Aligned_cols=421 Identities=13% Similarity=0.056 Sum_probs=245.4
Q ss_pred CCCchhhHHHHHHHHHhcCCChhHHHHHHHhcCC---CCcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHH
Q 002834 384 YLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICR---RDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILT 460 (875)
Q Consensus 384 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 460 (875)
+..+.. +|..|.-+...+|+++.+-+.|++... .....|+.+...|...|....|+.+++.-....-.|+..+-..
T Consensus 319 ~qnd~a-i~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAA-IFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 333444 888888999999999999999988754 3456789999999999999999999888665443455444333
Q ss_pred H-HHHhh-ccCchhhHHHHHHHHHHh-cCCCCCCchhHHHHHHHHHHhc-----------CCHHHHHHHHHhhccC-C-C
Q 002834 461 I-IHFCT-TVLREGMVKETHGYLIKT-GLLLGDTEHNIGNAILDAYAKC-----------RNIKYAFNVFQSLLEK-R-N 524 (875)
Q Consensus 461 l-l~~~~-~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~~-p-~ 524 (875)
+ -+.|. +.+..+++..+...++.. +...+...+..+-.+.-+|... ....++.+.+++..+. | |
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3 33343 456666776666666552 1111122333444444444321 1123455555555443 2 3
Q ss_pred cccHHHHHHHhhcCCChHHHHHHHHhhhcCC----CccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcc-hHhcHHH
Q 002834 525 LVTFNPVISGYANCGSADEAFMTFSRIYARD----LTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAV-TIMSLLP 599 (875)
Q Consensus 525 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~ 599 (875)
+...--+.--|...++.+.|.....+....+ +..|..|.-++...+++.+|+.+.+..... .|+.. -...=+.
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E--~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE--FGDNHVLMDGKIH 555 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH--hhhhhhhchhhhh
Confidence 3333333344556677777777777665442 222777777777777777777777665432 11111 1111111
Q ss_pred HhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC-----CC-hhhHHHHHHHHHHcCChH
Q 002834 600 VCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ-----KD-VVMLTAMIGGYAMHGMGK 673 (875)
Q Consensus 600 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-~~~~~~li~~~~~~g~~~ 673 (875)
.-...++.+++......+...--....+ ...++-....+....+.- .+ +.++..+..-.+. +.+
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~--------q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~--~~~ 625 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGV--------QQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS--QLK 625 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhH--------hhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh--hhh
Confidence 1122344444333322221110000000 001111122222222211 11 1222222221111 111
Q ss_pred HHHHHHHHHHHCCCCCCh--------hhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCCh-hHHHHHHHHhhcCCChH
Q 002834 674 AALKVFSDMLELGVNPDH--------VVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTP-EQYASLVDLLARGGQIS 744 (875)
Q Consensus 674 ~A~~~~~~m~~~g~~p~~--------~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~ 744 (875)
.+..-.. +...-..|.. ..|......+.+.+..++|...+.++.. +.|-. ..|...+..+...|.++
T Consensus 626 ~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~---~~~l~~~~~~~~G~~~~~~~~~~ 701 (799)
T KOG4162|consen 626 SAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK---IDPLSASVYYLRGLLLEVKGQLE 701 (799)
T ss_pred hcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh---cchhhHHHHHHhhHHHHHHHhhH
Confidence 1100000 1111122221 2344455578888999999998888855 55654 47777788999999999
Q ss_pred HHHHHHHhCC-CCCCH-HHHHHHHHHHHhcCChhHHHH--HHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHH
Q 002834 745 DAYSLVNRMP-VEADC-NVWGTLLGACRIHHEVELGRV--VANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMK 820 (875)
Q Consensus 745 ~A~~~~~~~~-~~p~~-~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 820 (875)
||.+.|.... ..|+. ....++...+...|+...|+. ....+++++|.++..|..||.++.+.|+.++|.+.+....
T Consensus 702 EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 702 EAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 9998887774 77865 677788888888999888888 9999999999999999999999999999999999887765
Q ss_pred h
Q 002834 821 T 821 (875)
Q Consensus 821 ~ 821 (875)
.
T Consensus 782 q 782 (799)
T KOG4162|consen 782 Q 782 (799)
T ss_pred h
Confidence 4
No 65
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.24 E-value=1.3e-08 Score=99.02 Aligned_cols=123 Identities=13% Similarity=0.021 Sum_probs=81.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhHHH
Q 002834 330 NDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAY 409 (875)
Q Consensus 330 ~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 409 (875)
.|+|.+|.++..+-.+.+ -. ....|.....+....|+.+.+-..+..+.+....+... +.-+........|+.+.|.
T Consensus 97 eG~~~qAEkl~~rnae~~-e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~-v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLA-VELTRARLLLNRRDYPAAR 173 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHH-HHHHHHHHHHhCCCchhHH
Confidence 466667766666655554 11 12334444555556666666666666665553333333 6667777777788888877
Q ss_pred HHHHhc---CCCCcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCCh
Q 002834 410 RTFLMI---CRRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDS 455 (875)
Q Consensus 410 ~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 455 (875)
.-.+++ ...++.........|.+.|++.....++..|.+.|.--|+
T Consensus 174 ~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~ 222 (400)
T COG3071 174 ENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDE 222 (400)
T ss_pred HHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChH
Confidence 766654 4457777888888999999999999999999888765443
No 66
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.20 E-value=5e-09 Score=98.57 Aligned_cols=306 Identities=11% Similarity=0.128 Sum_probs=158.3
Q ss_pred hcCCHHHHHHHHHhhccC-C-CcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCcc-------HHHHHHHHHHcCCchHH
Q 002834 505 KCRNIKYAFNVFQSLLEK-R-NLVTFNPVISGYANCGSADEAFMTFSRIYARDLTP-------WNLMIRVYAENDFPNQA 575 (875)
Q Consensus 505 ~~g~~~~A~~~~~~~~~~-p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~A 575 (875)
-..+.++|.++|-+|.+. | ...+--+|.+.|.+.|..+.|+++-+.+.+....| ...|..-|...|-++.|
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 346678888888888775 2 22344567777778888888888887775554444 44566677777888888
Q ss_pred HHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCCCC
Q 002834 576 LSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQKD 655 (875)
Q Consensus 576 ~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 655 (875)
..+|..+.+.|. --......|+..|-...++++|.++-..+.+.+..+..+ .+..
T Consensus 127 E~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~--eIAq---------------------- 181 (389)
T COG2956 127 EDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV--EIAQ---------------------- 181 (389)
T ss_pred HHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh--HHHH----------------------
Confidence 888877766431 112345556666666666666666666665555441111 0011
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHH-HHHhhcCcHHHHHHHHHHhHHHhCCCCC--hhHHHH
Q 002834 656 VVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVL-SACSHAGLVDEGLEIFRSIEKVQGIKPT--PEQYAS 732 (875)
Q Consensus 656 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll-~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~ 732 (875)
-|.-+...+....+.+.|..++.+..+. .|+.+--+.++ +.....|+++.|.+.++.+.+ -.|+ ......
T Consensus 182 --fyCELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e---Qn~~yl~evl~~ 254 (389)
T COG2956 182 --FYCELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLE---QNPEYLSEVLEM 254 (389)
T ss_pred --HHHHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHH---hChHHHHHHHHH
Confidence 1223333333444555555555555442 23322222222 244455555555555555544 1222 234444
Q ss_pred HHHHhhcCCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHH--HhcCCc
Q 002834 733 LVDLLARGGQISDAYSLVNRMP-VEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLY--AADARW 809 (875)
Q Consensus 733 l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~ 809 (875)
|..+|...|+.++...++.++. ..++...-..+........-.+.|.....+-+.-.|.--+.|-.+..-. +..|++
T Consensus 255 L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~ 334 (389)
T COG2956 255 LYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRA 334 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccch
Confidence 5555555555555555544442 3333333333333222222233344444444444444333332222111 223567
Q ss_pred hhHHHHHHHHHhCCCcCCCceeEEEeCCEEeEE
Q 002834 810 DGVVEIRKLMKTRDLKKPAACSWIEVERKNNAF 842 (875)
Q Consensus 810 ~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~~~f 842 (875)
.+.+.+.+.|....++..|.+.--.-+=+.|.|
T Consensus 335 k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l 367 (389)
T COG2956 335 KESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTL 367 (389)
T ss_pred hhhHHHHHHHHHHHHhhcCCceecccCCcceee
Confidence 778888888877667776765544444344433
No 67
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.19 E-value=1.7e-09 Score=97.11 Aligned_cols=162 Identities=14% Similarity=0.102 Sum_probs=142.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCCh-hHHHHHHH
Q 002834 658 MLTAMIGGYAMHGMGKAALKVFSDMLELGVNPD-HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTP-EQYASLVD 735 (875)
Q Consensus 658 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~ 735 (875)
+...|.-+|...|+...|..-+++.++. .|+ ..++..+...|.+.|..+.|.+.|+++.+ +.|+. ...+..+.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhH
Confidence 3556778899999999999999999985 555 45777788899999999999999999977 67764 48888999
Q ss_pred HhhcCCChHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchh
Q 002834 736 LLARGGQISDAYSLVNRMPVEAD----CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDG 811 (875)
Q Consensus 736 ~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 811 (875)
-+|..|++++|...|++....|. +.+|.++..+..+.|+++.|+..++++++++|+++.....++..+...|++-.
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 99999999999999999865553 47888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCC
Q 002834 812 VVEIRKLMKTRDL 824 (875)
Q Consensus 812 A~~~~~~~~~~~~ 824 (875)
|.-.++....++.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9999988877654
No 68
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.18 E-value=2.7e-06 Score=88.33 Aligned_cols=233 Identities=13% Similarity=0.097 Sum_probs=140.0
Q ss_pred CCcchhhhHHHHHHHhCCCCCcchhhHHHHHhHhcCChhHHHHHhccCCC---CCeeeHHHHHHHHHcCCCcchHHHHHH
Q 002834 160 GGIFAGKSLHAYVIKFGLERHTLVGNSLTSMYAKRGLVHDAYSVFDSIED---KDVVSWNAVISGLSENKVLGDAFRLFS 236 (875)
Q Consensus 160 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~ 236 (875)
+.+..+....+.+++ +.+-...+....--.+...|+.++|......-.+ .+.++|..+--.+-...++++|++.|+
T Consensus 21 kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~ 99 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYR 99 (700)
T ss_pred HHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHH
Confidence 444445555555544 2333333443333445556777777777665544 355678777666667788999999998
Q ss_pred HHHhCCCCCChhhHHhHHHHhccCCccccccchhHHHHHHHHhcccCCchhHhhhHHHHhHhcCChhHHHHHhhhcCC--
Q 002834 237 WMLTEPIKPNYATILNILPICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAELLFRRMKS-- 314 (875)
Q Consensus 237 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-- 314 (875)
..... .|| |..++.-|.-.-++.|+++.....-....+
T Consensus 100 nAl~~--~~d--------------------------------------N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~ 139 (700)
T KOG1156|consen 100 NALKI--EKD--------------------------------------NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR 139 (700)
T ss_pred HHHhc--CCC--------------------------------------cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence 88754 555 555555555555555666655555444433
Q ss_pred -CCccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHhcCCCCchhhHHH
Q 002834 315 -RDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGN 393 (875)
Q Consensus 315 -~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 393 (875)
.....|.....++.-.|++..|..+++...+.....|+...|.....- -
T Consensus 140 ~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~------------------------------L 189 (700)
T KOG1156|consen 140 PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELL------------------------------L 189 (700)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHH------------------------------H
Confidence 345678888888888999999999999887764234666655432211 1
Q ss_pred HHHHHHhcCCChhHHHHHHHhcCCC--Ccc-hHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHh
Q 002834 394 ALVSFYAKCSDMEAAYRTFLMICRR--DLI-SWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFC 465 (875)
Q Consensus 394 ~li~~~~~~g~~~~A~~~~~~~~~~--~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 465 (875)
--.....+.|..+.|.+.+...... |-. .-.+-...+.+.++.++|..++..++.. .||..-|...+..|
T Consensus 190 y~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~ 262 (700)
T KOG1156|consen 190 YQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKA 262 (700)
T ss_pred HHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHH
Confidence 1122234455566666665554332 111 2233455667778888888888888775 46766665554443
No 69
>PF13041 PPR_2: PPR repeat family
Probab=99.18 E-value=7.1e-11 Score=82.40 Aligned_cols=50 Identities=30% Similarity=0.538 Sum_probs=47.1
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhh
Q 002834 654 KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSH 703 (875)
Q Consensus 654 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~ 703 (875)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
No 70
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=8.2e-07 Score=91.00 Aligned_cols=443 Identities=12% Similarity=0.097 Sum_probs=228.5
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHhcCCCCchhhHHHH--HHHHH--h
Q 002834 325 AGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNA--LVSFY--A 400 (875)
Q Consensus 325 ~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--li~~~--~ 400 (875)
+-+.+.|++++|.....++...+ +-|...+..-+-++.+.+.++.|..+... .+... +++. +=.+| .
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~~~----~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGALL----VINSFFFEKAYCEY 90 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cchhh----hcchhhHHHHHHHH
Confidence 34445566666666666655542 12223344444455555555555533221 11100 1111 23333 3
Q ss_pred cCCChhHHHHHHHhcCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhh-HHHHHHHhhccCchhhHHHHHH
Q 002834 401 KCSDMEAAYRTFLMICRRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSIT-ILTIIHFCTTVLREGMVKETHG 479 (875)
Q Consensus 401 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~ 479 (875)
+.+..++|...++.....+..+...-...+.+.|++++|+.+|+.+.+++..--..- -..++.+-.. ..+ .
T Consensus 91 rlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~----~ 162 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQV----Q 162 (652)
T ss_pred HcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhH----H
Confidence 678888888888865555655666667778888999999999998877653221111 1111111000 000 0
Q ss_pred HHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCc--
Q 002834 480 YLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFMTFSRIYARDLT-- 557 (875)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-- 557 (875)
.+...... +..+...+......+...|++.+|+++++....-. . +.+...+..
T Consensus 163 ~~q~v~~v-~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~------------~------------e~l~~~d~~eE 217 (652)
T KOG2376|consen 163 LLQSVPEV-PEDSYELLYNTACILIENGKYNQAIELLEKALRIC------------R------------EKLEDEDTNEE 217 (652)
T ss_pred HHHhccCC-CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH------------H------------Hhhcccccchh
Confidence 11111110 01111122222333444555555555555441100 0 000000000
Q ss_pred -------c-HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcch----HhcHHHHhhcccchH-------------HHHH
Q 002834 558 -------P-WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVT----IMSLLPVCSQMASVH-------------LLRQ 612 (875)
Q Consensus 558 -------~-~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~----~~~ll~a~~~~~~~~-------------~a~~ 612 (875)
+ -..|..++...|+.++|.+++....+.. .+|... -+.++..-....-.+ .+..
T Consensus 218 eie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~ 296 (652)
T KOG2376|consen 218 EIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEF 296 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHH
Confidence 0 2345555667777777777777776653 233311 122222111111111 0111
Q ss_pred HHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCCCC-hhhHHHHHHHHH--HcCChHHHHHHHHHHHHCCCCC
Q 002834 613 CHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQKD-VVMLTAMIGGYA--MHGMGKAALKVFSDMLELGVNP 689 (875)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p 689 (875)
....+...........+.++.+|. +..+.+.++....+... ...+.+++.... +......|.+++...-+. .|
T Consensus 297 ~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p 372 (652)
T KOG2376|consen 297 LLSKLSKKQKQAIYRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HP 372 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CC
Confidence 111111111113334455555553 55667777777766522 223333433322 223577888888887764 34
Q ss_pred Ch--hhHHHHHHHHhhcCcHHHHHHHHH--------HhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhC------
Q 002834 690 DH--VVITAVLSACSHAGLVDEGLEIFR--------SIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRM------ 753 (875)
Q Consensus 690 ~~--~~~~~ll~a~~~~g~~~~a~~~~~--------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~------ 753 (875)
.. +.....+......|+++.|++++. ...+ .+..| .+...++..+.+.+..+-|.+++.+.
T Consensus 373 ~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~-~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~ 449 (652)
T KOG2376|consen 373 EKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE-AKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRK 449 (652)
T ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh-hccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHH
Confidence 43 344445556788999999999998 4444 34444 45556777787777655555555444
Q ss_pred --CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHH
Q 002834 754 --PVEADC-NVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKL 818 (875)
Q Consensus 754 --~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 818 (875)
...+.. .+|.-+...-.++|+.+.|...++++++.+|++......+.-.|+.. +.+.|+.+-+.
T Consensus 450 ~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 450 QQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred hcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 122222 34445555556789999999999999999999999888887777664 56666665443
No 71
>PRK12370 invasion protein regulator; Provisional
Probab=99.17 E-value=4.1e-09 Score=116.95 Aligned_cols=211 Identities=13% Similarity=0.022 Sum_probs=159.7
Q ss_pred cchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC--C-ChhhHHHHHHHHHHcCChHHHHHHHHH
Q 002834 605 ASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ--K-DVVMLTAMIGGYAMHGMGKAALKVFSD 681 (875)
Q Consensus 605 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~ 681 (875)
++.+.|...++.+.+..+.+...+..+...+...|++++|...|++..+ | +...|..+...+...|++++|+..+++
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4467777777777777777777888888889999999999999998665 3 456888899999999999999999999
Q ss_pred HHHCCCCCChh-hHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCC
Q 002834 682 MLELGVNPDHV-VITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEAD 758 (875)
Q Consensus 682 m~~~g~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~ 758 (875)
..+. .|+.. .+..++..+...|++++|...++++.+. ..|+ ...+..+..+|...|++++|.+.++++. ..|+
T Consensus 398 Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~ 473 (553)
T PRK12370 398 CLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT 473 (553)
T ss_pred HHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch
Confidence 9984 55543 3333445567789999999999988662 2454 3467788899999999999999998874 5555
Q ss_pred H-HHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 002834 759 C-NVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTR 822 (875)
Q Consensus 759 ~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 822 (875)
. ..++.+...+...| +.|...++++++..-..+.....+..+|+-.|+-+.+..+ +++.+.
T Consensus 474 ~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 474 GLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 4 44555555556666 4788878887776544444444588899999999999888 666543
No 72
>PF13041 PPR_2: PPR repeat family
Probab=99.14 E-value=9.3e-11 Score=81.80 Aligned_cols=50 Identities=34% Similarity=0.549 Sum_probs=48.0
Q ss_pred CCccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhc
Q 002834 315 RDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAY 365 (875)
Q Consensus 315 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~ 365 (875)
||+++||++|.+|++.|++++|+++|++|.+.| +.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g-~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRG-IKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHcC
Confidence 789999999999999999999999999999999 99999999999999874
No 73
>PRK12370 invasion protein regulator; Provisional
Probab=99.13 E-value=4.4e-09 Score=116.72 Aligned_cols=177 Identities=13% Similarity=0.044 Sum_probs=142.0
Q ss_pred cCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhhcCcHHHHHHH
Q 002834 638 CGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPD-HVVITAVLSACSHAGLVDEGLEI 713 (875)
Q Consensus 638 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~ 713 (875)
.+++++|...+++..+ .+..+|..+...+...|++++|+..|++..+. .|+ ...+..+..++...|++++|...
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4568899999998765 46678888989999999999999999999985 555 45677777799999999999999
Q ss_pred HHHhHHHhCCCCChh-HHHHHHHHhhcCCChHHHHHHHHhCC--CCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhccc
Q 002834 714 FRSIEKVQGIKPTPE-QYASLVDLLARGGQISDAYSLVNRMP--VEADC-NVWGTLLGACRIHHEVELGRVVANRLFEME 789 (875)
Q Consensus 714 ~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 789 (875)
++++.+ +.|+.. .+..++..+...|++++|...+++.. ..|+. ..+..+..++...|+.++|+..++++....
T Consensus 395 ~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~ 471 (553)
T PRK12370 395 INECLK---LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE 471 (553)
T ss_pred HHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc
Confidence 999977 566643 33344556777899999999998874 34544 456667777778999999999999999898
Q ss_pred CCCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 790 ADNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 790 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
|.+......++..|...| ++|...++.+.+
T Consensus 472 ~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 472 ITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred chhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 988888888999999888 477776665554
No 74
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.12 E-value=1.5e-08 Score=106.47 Aligned_cols=192 Identities=16% Similarity=0.206 Sum_probs=143.8
Q ss_pred HHHHHHhHhcCCHHHHHHHhccCCC----------CC-hhhHHHHHHHHHHcCChHHHHHHHHHHHH-----CCC-CCCh
Q 002834 629 GALLHLYAKCGSIFSASKIFQCHPQ----------KD-VVMLTAMIGGYAMHGMGKAALKVFSDMLE-----LGV-NPDH 691 (875)
Q Consensus 629 ~~l~~~~~~~g~~~~A~~~~~~~~~----------~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~-~p~~ 691 (875)
+.+...|...+++.+|..+|+++.. |. ..+++.|...|.+.|++++|...+++..+ .|. .|..
T Consensus 245 ~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v 324 (508)
T KOG1840|consen 245 NILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEV 324 (508)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHH
Confidence 3566778888888888888876543 11 24677788888999998888877776553 122 2233
Q ss_pred h-hHHHHHHHHhhcCcHHHHHHHHHHhHHHhC--CCCC----hhHHHHHHHHhhcCCChHHHHHHHHhCC---------C
Q 002834 692 V-VITAVLSACSHAGLVDEGLEIFRSIEKVQG--IKPT----PEQYASLVDLLARGGQISDAYSLVNRMP---------V 755 (875)
Q Consensus 692 ~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~ 755 (875)
. .++.+...|...+++++|..+++...+.+. ..++ ..+++.|...|...|+++||.++++++. .
T Consensus 325 ~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~ 404 (508)
T KOG1840|consen 325 AAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKK 404 (508)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCc
Confidence 2 356666689999999999999998876544 2232 3489999999999999999999998873 2
Q ss_pred CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcc----cCCCCc---cHHHHHHHHHhcCCchhHHHHHHHHH
Q 002834 756 EAD-CNVWGTLLGACRIHHEVELGRVVANRLFEM----EADNIG---NYVVMSNLYAADARWDGVVEIRKLMK 820 (875)
Q Consensus 756 ~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~ 820 (875)
.+. ...++.+..+|...++.+.|.+.|.....+ .|+.|. +|..|+-+|.++|++++|.++...+.
T Consensus 405 ~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 405 DYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred ChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 232 366788889998899999898888877654 465554 57789999999999999999866553
No 75
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.11 E-value=8.1e-07 Score=94.03 Aligned_cols=306 Identities=12% Similarity=0.033 Sum_probs=180.2
Q ss_pred HHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC---CCcccHHHHHHHhhcCCChHHHHHHHHh
Q 002834 474 VKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEK---RNLVTFNPVISGYANCGSADEAFMTFSR 550 (875)
Q Consensus 474 a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---p~~~~~~~l~~~~~~~~~~~~A~~~~~~ 550 (875)
+.+.++..++.+ +.|+.+.-.+.--|+..++++.|.+...+...- -+...|..+.-.+.-.+++.+|+.+.+.
T Consensus 463 slqale~av~~d----~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~ 538 (799)
T KOG4162|consen 463 SLQALEEAVQFD----PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDA 538 (799)
T ss_pred HHHHHHHHHhcC----CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 334444444433 344444444555666777788888777766553 2667788777777778888888888877
Q ss_pred hhcCCCccHHH---HHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCC-Cch
Q 002834 551 IYARDLTPWNL---MIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFD-GVR 626 (875)
Q Consensus 551 ~~~~~~~~~~~---l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~-~~~ 626 (875)
....-...|.. -+..-..-++.++++.....+..- --+...+...+. .|....-..-...... .+. .+.
T Consensus 539 al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~--we~~~~~q~~~~----~g~~~~lk~~l~la~~-q~~~a~s 611 (799)
T KOG4162|consen 539 ALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLAL--WEAEYGVQQTLD----EGKLLRLKAGLHLALS-QPTDAIS 611 (799)
T ss_pred HHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHH--HHhhhhHhhhhh----hhhhhhhhcccccCcc-cccccch
Confidence 65443333222 122223456666666665554321 000000000000 0000000000000000 111 111
Q ss_pred HHHHHHHHh---HhcCCHHHHHHHhccCCCCC------hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHH
Q 002834 627 LNGALLHLY---AKCGSIFSASKIFQCHPQKD------VVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAV 697 (875)
Q Consensus 627 ~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 697 (875)
.+..+.... .+.-..+..+..+...+.|+ ...|......+.+.++.++|...+.+.... .+-....|...
T Consensus 612 ~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~ 690 (799)
T KOG4162|consen 612 TSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLR 690 (799)
T ss_pred hhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHh
Confidence 221111111 11111111222222222233 235666777888889999998888877763 23334455555
Q ss_pred HHHHhhcCcHHHHHHHHHHhHHHhCCCCChh-HHHHHHHHhhcCCChHHHHH--HHHhCC-CCC-CHHHHHHHHHHHHhc
Q 002834 698 LSACSHAGLVDEGLEIFRSIEKVQGIKPTPE-QYASLVDLLARGGQISDAYS--LVNRMP-VEA-DCNVWGTLLGACRIH 772 (875)
Q Consensus 698 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~--~~~~~~-~~p-~~~~~~~l~~~~~~~ 772 (875)
...+...|.+++|.+.|..... +.|+.. ...+++.++.+.|+..-|.. ++..+. .+| ++..|..+.....+.
T Consensus 691 G~~~~~~~~~~EA~~af~~Al~---ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~ 767 (799)
T KOG4162|consen 691 GLLLEVKGQLEEAKEAFLVALA---LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKL 767 (799)
T ss_pred hHHHHHHHhhHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Confidence 5677889999999999988855 888754 88999999999997766666 777774 666 569999999999999
Q ss_pred CChhHHHHHHHHHhcccCCCCc
Q 002834 773 HEVELGRVVANRLFEMEADNIG 794 (875)
Q Consensus 773 ~~~~~a~~~~~~~~~~~p~~~~ 794 (875)
|+.+.|...|.-++++++.+|.
T Consensus 768 Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 768 GDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred cchHHHHHHHHHHHhhccCCCc
Confidence 9999999999999999998875
No 76
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.10 E-value=6.8e-09 Score=105.08 Aligned_cols=186 Identities=16% Similarity=0.066 Sum_probs=107.6
Q ss_pred HHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHh
Q 002834 627 LNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPD-HVVITAVLSACS 702 (875)
Q Consensus 627 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~ 702 (875)
.+..+...|.+.|+.++|...|++..+ .+...|+.+...+...|++++|+..|++..+ +.|+ ..++..+..++.
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 345555566667777777777765543 3456777777777777777777777777776 3444 345555666667
Q ss_pred hcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHH
Q 002834 703 HAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP--VEADCNVWGTLLGACRIHHEVELGRV 780 (875)
Q Consensus 703 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~ 780 (875)
..|++++|.+.|++..+ ..|+..........+...++.++|.+.+++.. ..|+ .|.. .......|+...+ .
T Consensus 144 ~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~--~~~~-~~~~~~lg~~~~~-~ 216 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKE--QWGW-NIVEFYLGKISEE-T 216 (296)
T ss_pred HCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCcc--ccHH-HHHHHHccCCCHH-H
Confidence 77777777777777755 44543322222223345566777777775432 2222 2221 1112223444332 1
Q ss_pred HHHHHh-------cccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 781 VANRLF-------EMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 781 ~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
.++.+. ++.|+.+.+|..+|.+|...|++++|+..+++..+
T Consensus 217 ~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 217 LMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 222222 44555566777777777777777777777666554
No 77
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.10 E-value=1.6e-07 Score=89.50 Aligned_cols=96 Identities=15% Similarity=0.258 Sum_probs=59.9
Q ss_pred HHHHHHhHhcCCHHHHHHHhccCCCC---ChhhHHH-HHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHH-HHhh
Q 002834 629 GALLHLYAKCGSIFSASKIFQCHPQK---DVVMLTA-MIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLS-ACSH 703 (875)
Q Consensus 629 ~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~-a~~~ 703 (875)
-.+..+++..|.+.+|+++|-.+..| |-.+|.+ |.++|.+++.++.|..++-++ +-+.+..+..-+|. -|.+
T Consensus 397 ~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk 473 (557)
T KOG3785|consen 397 LNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYK 473 (557)
T ss_pred hHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHH
Confidence 34556677777888888888777653 3455554 456777777887776555443 22334444444443 6777
Q ss_pred cCcHHHHHHHHHHhHHHhCCCCChhHH
Q 002834 704 AGLVDEGLEIFRSIEKVQGIKPTPEQY 730 (875)
Q Consensus 704 ~g~~~~a~~~~~~~~~~~~~~p~~~~~ 730 (875)
.+.+=-|-+.|+.+.. ..|+++.|
T Consensus 474 ~~eFyyaaKAFd~lE~---lDP~pEnW 497 (557)
T KOG3785|consen 474 ANEFYYAAKAFDELEI---LDPTPENW 497 (557)
T ss_pred HHHHHHHHHhhhHHHc---cCCCcccc
Confidence 7777777777766644 66666655
No 78
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.07 E-value=2.9e-09 Score=99.94 Aligned_cols=226 Identities=16% Similarity=0.124 Sum_probs=143.5
Q ss_pred HHHHHHhhcCCChHHHHHHHHhhhcC--CCccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccc
Q 002834 529 NPVISGYANCGSADEAFMTFSRIYAR--DLTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMAS 606 (875)
Q Consensus 529 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~ 606 (875)
+.+..+|.+.|-+.+|++.|+...+. -+.+|..|.++|.+..+++.|+.++.+-.+. .|-.+||
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~------------ 292 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTY------------ 292 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhh------------
Confidence 44566666666666666666665443 3333666666666666666666666655442 4444443
Q ss_pred hHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 002834 607 VHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELG 686 (875)
Q Consensus 607 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 686 (875)
...+...+-..++.++|+++|+...+..
T Consensus 293 ----------------------------------------------------l~g~ARi~eam~~~~~a~~lYk~vlk~~ 320 (478)
T KOG1129|consen 293 ----------------------------------------------------LLGQARIHEAMEQQEDALQLYKLVLKLH 320 (478)
T ss_pred ----------------------------------------------------hhhhHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 1223334444455556666666555531
Q ss_pred CCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC---CCCC--HHH
Q 002834 687 VNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP---VEAD--CNV 761 (875)
Q Consensus 687 ~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~--~~~ 761 (875)
+.+.....++...|.-.++.|.|+.+++++.+ .|+ .+++.|..++-+|.-++++|-++.-|++.. ..|+ .++
T Consensus 321 -~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq-mG~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDv 397 (478)
T KOG1129|consen 321 -PINVEAIACIAVGYFYDNNPEMALRYYRRILQ-MGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADV 397 (478)
T ss_pred -CccceeeeeeeeccccCCChHHHHHHHHHHHH-hcC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhh
Confidence 22333444444455555666666666666655 233 234555555555555666666665555542 2343 377
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 002834 762 WGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTRD 823 (875)
Q Consensus 762 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 823 (875)
|-++......-||+..|.+.++-++--+|++...++.|+-+-.+.|+.++|..+++..++..
T Consensus 398 WYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 398 WYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred hhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 88888888888999999999999999999999999999999999999999999998887644
No 79
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.05 E-value=2.4e-08 Score=98.77 Aligned_cols=194 Identities=18% Similarity=0.142 Sum_probs=136.9
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhc
Q 002834 559 WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKC 638 (875)
Q Consensus 559 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 638 (875)
+..+...|...|++++|...+++..+. .|+ +...+..+...|...
T Consensus 34 ~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~---------------------------------~~~~~~~la~~~~~~ 78 (234)
T TIGR02521 34 RVQLALGYLEQGDLEVAKENLDKALEH--DPD---------------------------------DYLAYLALALYYQQL 78 (234)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--Ccc---------------------------------cHHHHHHHHHHHHHc
Confidence 666667777777777777777766543 232 333444556667777
Q ss_pred CCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhhcCcHHHHHHHH
Q 002834 639 GSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNP-DHVVITAVLSACSHAGLVDEGLEIF 714 (875)
Q Consensus 639 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~ 714 (875)
|++++|.+.+++..+ .+...+..+...+...|++++|++.+++..+....| ....+..+..++...|++++|.+.+
T Consensus 79 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (234)
T TIGR02521 79 GELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYL 158 (234)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 777777777776543 345567777888888888888888888887643222 2345566667888889999999999
Q ss_pred HHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccC
Q 002834 715 RSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-V-EADCNVWGTLLGACRIHHEVELGRVVANRLFEMEA 790 (875)
Q Consensus 715 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 790 (875)
++..+ ..|+ ...+..++..+...|++++|...+++.. . +.++..+..+...+...|+.+.|....+.+.+..|
T Consensus 159 ~~~~~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 159 TRALQ---IDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHH---hCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 88876 3343 4577788888889999999998888763 2 33456666667777788899999888887766544
No 80
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=1.9e-06 Score=84.19 Aligned_cols=257 Identities=9% Similarity=-0.054 Sum_probs=166.9
Q ss_pred CcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCcc---HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHH
Q 002834 524 NLVTFNPVISGYANCGSADEAFMTFSRIYARDLTP---WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPV 600 (875)
Q Consensus 524 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a 600 (875)
|+.....+...+...|+.++|+..|++....|+.+ .....-.+.+.|+.++.-.+...+...
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~--------------- 295 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAK--------------- 295 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhh---------------
Confidence 55555666666666666666666666655544444 222222334555555555555444322
Q ss_pred hhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHH
Q 002834 601 CSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALK 677 (875)
Q Consensus 601 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 677 (875)
.-.+..-|---........+++.|+.+-++..+ .++..|-.-...+...|+.++|.-
T Consensus 296 --------------------~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~I 355 (564)
T KOG1174|consen 296 --------------------VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVI 355 (564)
T ss_pred --------------------hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHH
Confidence 101000000111222345567777777766554 334444444567788899999999
Q ss_pred HHHHHHHCCCCC-ChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHH-HHhhc-CCChHHHHHHHHhCC
Q 002834 678 VFSDMLELGVNP-DHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLV-DLLAR-GGQISDAYSLVNRMP 754 (875)
Q Consensus 678 ~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~-~~~~~-~g~~~~A~~~~~~~~ 754 (875)
.|+..+. +.| +-..|..|+.+|...|++.+|.-.-+...+. +..+..++..++ ..+.- ----++|.+++++..
T Consensus 356 aFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L 431 (564)
T KOG1174|consen 356 AFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL 431 (564)
T ss_pred HHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh
Confidence 9998877 454 5678999999999999999998877766552 333444555553 33332 223478999998874
Q ss_pred -CCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHH
Q 002834 755 -VEADC-NVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMK 820 (875)
Q Consensus 755 -~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 820 (875)
.+|+- .....+...|...|..+.++..+++.+...|+. ..+..||.++...+.+.+|.+.+....
T Consensus 432 ~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 432 KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 77865 566777788889999999999999999988854 568899999999999999999766543
No 81
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.03 E-value=6.5e-09 Score=97.65 Aligned_cols=189 Identities=12% Similarity=0.056 Sum_probs=155.9
Q ss_pred HHHHHHhHhcCCHHHHHHHhccCCC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHH-HHHHHHhhcC
Q 002834 629 GALLHLYAKCGSIFSASKIFQCHPQ--KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVIT-AVLSACSHAG 705 (875)
Q Consensus 629 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~a~~~~g 705 (875)
+.+..+|.+.|.+.+|.+.|+...+ |-+.+|-.|-++|.+-.++..|+.++.+-.+. .|-.+||. ...+.+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence 5677888889999999988887654 77788888999999999999999999999884 66666654 4555788899
Q ss_pred cHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 002834 706 LVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP--VEADCNVWGTLLGACRIHHEVELGRVVAN 783 (875)
Q Consensus 706 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 783 (875)
+.++|.++++...+. .+.+++...|+...|--.++.+-|+.++.++. -.-++..++++.-+|.-.+.++.+...++
T Consensus 305 ~~~~a~~lYk~vlk~--~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKL--HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred hHHHHHHHHHHHHhc--CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 999999999998772 23346688888888889999999999998874 34566788999999999999999999999
Q ss_pred HHhcccC--C-CCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 784 RLFEMEA--D-NIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 784 ~~~~~~p--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
+++.... + -+..|..|+.+....|++.-|.+.++....
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~ 423 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT 423 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc
Confidence 9988754 2 355789999999999999999998776543
No 82
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=9.4e-07 Score=90.56 Aligned_cols=117 Identities=12% Similarity=0.080 Sum_probs=76.3
Q ss_pred HHhcCCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHhhccCCcchhhhHHHHHHHhCCCCCcchhhH--HHHHhH--h
Q 002834 118 GFACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSACARLGGIFAGKSLHAYVIKFGLERHTLVGNS--LTSMYA--K 193 (875)
Q Consensus 118 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~~~--~ 193 (875)
-+..++ ++++|+..-.++...+ +.+...+..=+-+....+.++.|..+.+ +.+ -..+++. +=.+|| +
T Consensus 21 ~~~~~~-e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~---~~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 21 RHGKNG-EYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIK---KNG---ALLVINSFFFEKAYCEYR 91 (652)
T ss_pred Hhccch-HHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcc---hhhhcchhhHHHHHHHHH
Confidence 344566 7777777777776654 4455556666666667777777664432 111 1112222 245555 5
Q ss_pred cCChhHHHHHhccCCCCCeeeHHHHHHHHHcCCCcchHHHHHHHHHhCCC
Q 002834 194 RGLVHDAYSVFDSIEDKDVVSWNAVISGLSENKVLGDAFRLFSWMLTEPI 243 (875)
Q Consensus 194 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~ 243 (875)
.+..|+|+..++.....+..+...-...+-+.|++++|+.+|+.+.+.+.
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~ 141 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS 141 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 68899999999866555555555556778899999999999999987654
No 83
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.00 E-value=6.3e-08 Score=98.04 Aligned_cols=197 Identities=9% Similarity=0.000 Sum_probs=130.8
Q ss_pred HhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC--C-ChhhHHHHHHHHHHcCChHHHH
Q 002834 600 VCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ--K-DVVMLTAMIGGYAMHGMGKAAL 676 (875)
Q Consensus 600 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~ 676 (875)
.+...|+.+.|...+..+.+..+.++..++.+...|...|++++|...|++..+ | +..+|..+..++...|++++|+
T Consensus 73 ~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~ 152 (296)
T PRK11189 73 LYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQ 152 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 344444555555555555554455666778888889999999999999988765 3 4578888999999999999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCCh--HHHHHHHHhC-
Q 002834 677 KVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQI--SDAYSLVNRM- 753 (875)
Q Consensus 677 ~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--~~A~~~~~~~- 753 (875)
+.|++..+. .|+..........+...++.++|.+.|++... ...|+...+ .++..+ .|+. +++.+.+.+.
T Consensus 153 ~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~~ 225 (296)
T PRK11189 153 DDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KLDKEQWGW-NIVEFY--LGKISEETLMERLKAGA 225 (296)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hCCccccHH-HHHHHH--ccCCCHHHHHHHHHhcC
Confidence 999999884 56543222222234456789999999977654 234433322 333333 4444 3334333322
Q ss_pred C----CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccC-CCCccHHHHHHHH
Q 002834 754 P----VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEA-DNIGNYVVMSNLY 803 (875)
Q Consensus 754 ~----~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~ 803 (875)
. ..| ....|..+...+...|+.+.|+..++++++++| +.+.....+..+.
T Consensus 226 ~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~ 281 (296)
T PRK11189 226 TDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELA 281 (296)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 1 122 236799999999999999999999999999997 4455544454443
No 84
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.99 E-value=1.5e-06 Score=93.03 Aligned_cols=255 Identities=15% Similarity=0.142 Sum_probs=139.2
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHCCCCCCc-chHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhc
Q 002834 560 NLMIRVYAENDFPNQALSLFLKLQAQGMKPDA-VTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKC 638 (875)
Q Consensus 560 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 638 (875)
..+...|...|++++|++++++..+. .|+. ..|..-.+.+-+.|++..|.+..+.+......|..+.+-.+..+.++
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa 275 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRA 275 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHC
Confidence 44555566667777777777666654 4443 23444445566667777777777766666666777777778888888
Q ss_pred CCHHHHHHHhccCCCCCh----------hhHH--HHHHHHHHcCChHHHHHHHHHHHHC--CC---CCChh---------
Q 002834 639 GSIFSASKIFQCHPQKDV----------VMLT--AMIGGYAMHGMGKAALKVFSDMLEL--GV---NPDHV--------- 692 (875)
Q Consensus 639 g~~~~A~~~~~~~~~~~~----------~~~~--~li~~~~~~g~~~~A~~~~~~m~~~--g~---~p~~~--------- 692 (875)
|++++|.+++.....++. ..|- ....+|.+.|++..|+.-|....+. .+ +-|-+
T Consensus 276 ~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~ 355 (517)
T PF12569_consen 276 GRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTL 355 (517)
T ss_pred CCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccH
Confidence 888888888777665431 1332 3456778888888887776655432 11 22222
Q ss_pred -hHHHHHHHHhhcC-------cHHHHHHHHHHhHHHhCCCC-----------ChhHHHHHHHHh---hcCCChHHHHHHH
Q 002834 693 -VITAVLSACSHAG-------LVDEGLEIFRSIEKVQGIKP-----------TPEQYASLVDLL---ARGGQISDAYSLV 750 (875)
Q Consensus 693 -~~~~ll~a~~~~g-------~~~~a~~~~~~~~~~~~~~p-----------~~~~~~~l~~~~---~~~g~~~~A~~~~ 750 (875)
+|..+++..-+.. -...|.+++-++........ +..-...+..-. .+...-+++...-
T Consensus 356 r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~ 435 (517)
T PF12569_consen 356 RAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAA 435 (517)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 2333333221111 11234444444422100000 000000010000 0111111111111
Q ss_pred H-----------hC----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHH
Q 002834 751 N-----------RM----PVEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEI 815 (875)
Q Consensus 751 ~-----------~~----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 815 (875)
. +. +.+.|.+....-+ .....=++.|.+.++.+.+..|++..+|..--.+|.+.|++--|++.
T Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~D~Dp~GekL--~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqa 513 (517)
T PF12569_consen 436 KKEPKKQQNKSKKKEKVEPKKKDDDPLGEKL--LKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQA 513 (517)
T ss_pred hhhhhhhhccccccccccCCcCCCCccHHHH--hcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHH
Confidence 0 00 1122222222221 12334578899999999999999999999999999999999999886
Q ss_pred HHH
Q 002834 816 RKL 818 (875)
Q Consensus 816 ~~~ 818 (875)
+++
T Consensus 514 L~k 516 (517)
T PF12569_consen 514 LKK 516 (517)
T ss_pred HHh
Confidence 553
No 85
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.98 E-value=1.8e-05 Score=86.28 Aligned_cols=175 Identities=11% Similarity=0.041 Sum_probs=100.6
Q ss_pred HHHHHHHHhcCCCC-chhhhHHHHHHHccCCchHHHHhhccCCC---CCchhHHHHHHHHhcCCCChhHHHHHHHHhHhc
Q 002834 64 ALHGYVTKLGHISC-QAVSKALLNLYAKCGVIDDCYKLFGQVDN---TDPVTWNILLSGFACSHVDDARVMNLFYNMHVR 139 (875)
Q Consensus 64 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~ 139 (875)
.++..+....+.++ ...|..|...|+...++..|.+.|+..-+ .+...+......|++.. +++.|..+.-..-+.
T Consensus 477 al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~-~we~a~~I~l~~~qk 555 (1238)
T KOG1127|consen 477 ALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEES-TWEEAFEICLRAAQK 555 (1238)
T ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccc-cHHHHHHHHHHHhhh
Confidence 33333444444444 34677777777777777777777776544 34455667777777777 787777763333222
Q ss_pred CCCCCCcchHHHHHHHhhccCCcchhhhHHHHHHHhCCCCCcchhhHHHHHhHhcCChhHHHHHhccCCCCCeeeH-HHH
Q 002834 140 DQPKPNSVTVAIVLSACARLGGIFAGKSLHAYVIKFGLERHTLVGNSLTSMYAKRGLVHDAYSVFDSIEDKDVVSW-NAV 218 (875)
Q Consensus 140 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~l 218 (875)
.....-...|..+--.+-..++...+..-|+...+.. +-|...|..|..+|.++|.+..|.++|++...-++.++ ...
T Consensus 556 a~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~f 634 (1238)
T KOG1127|consen 556 APAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRF 634 (1238)
T ss_pred chHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHH
Confidence 2000111122222223445556666666666555544 34555777888888888888888888876654333322 211
Q ss_pred --HHHHHcCCCcchHHHHHHHHHh
Q 002834 219 --ISGLSENKVLGDAFRLFSWMLT 240 (875)
Q Consensus 219 --i~~~~~~g~~~~a~~l~~~m~~ 240 (875)
....+-.|.+.+|+..+.....
T Consensus 635 k~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 635 KEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHH
Confidence 1223556777777777776653
No 86
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.96 E-value=3.6e-06 Score=91.51 Aligned_cols=552 Identities=13% Similarity=0.045 Sum_probs=299.1
Q ss_pred chhhHHHHHhHhcCChhHHHHHhccCCC---CCeeeHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCChhhHHhHHHHhc
Q 002834 182 LVGNSLTSMYAKRGLVHDAYSVFDSIED---KDVVSWNAVISGLSENKVLGDAFRLFSWMLTEPIKPNYATILNILPICA 258 (875)
Q Consensus 182 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~ 258 (875)
..|..|-..|+..-+...|.+.|+..-+ .|..++......|++..+++.|..+.-...+. .|- . .
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qk--a~a-~-------~-- 560 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQK--APA-F-------A-- 560 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhh--chH-H-------H--
Confidence 3788888889888888899999988765 35567788889999999999999883332221 110 0 0
Q ss_pred cCCccccccchhHHHHHHHHhcccCCchhHhhhHHHHhHhcCChhHHHHHhhhcCC---CCccchHHHHHHHHcCCCHHH
Q 002834 259 SLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAELLFRRMKS---RDLVSWNAIIAGYASNDEWLK 335 (875)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 335 (875)
-..-|.-..-.|.+.++...|..-|+.... .|..+|..+..+|...|++..
T Consensus 561 --------------------------~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~ 614 (1238)
T KOG1127|consen 561 --------------------------CKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSH 614 (1238)
T ss_pred --------------------------HHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceeh
Confidence 011111133345677888888888877654 467788888999999999999
Q ss_pred HHHHHHHHHHcCCCCCChhhHHHHHHH--HhccCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhcC-------CChh
Q 002834 336 ALNLFCELITKEMIWPDSVTLVSLLPA--CAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKC-------SDME 406 (875)
Q Consensus 336 a~~~~~~m~~~~~~~pd~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-------g~~~ 406 (875)
|+++|.+... +.|+.. |.....+ -+..|.+.++...++.+....-.... ..+.+...+.+. |-..
T Consensus 615 AlKvF~kAs~---LrP~s~-y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~--~q~gLaE~~ir~akd~~~~gf~~ 688 (1238)
T KOG1127|consen 615 ALKVFTKASL---LRPLSK-YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERT--GQNGLAESVIRDAKDSAITGFQK 688 (1238)
T ss_pred HHHhhhhhHh---cCcHhH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHhh
Confidence 9999988766 346543 3222222 23456666666555554432110000 112222222111 1111
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHHHhcC
Q 002834 407 AAYRTFLMICRRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGL 486 (875)
Q Consensus 407 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 486 (875)
.|...|+ ++++.|.-.......-+...|..+-.+|. +|.+.. +
T Consensus 689 kavd~~e------------------------ksie~f~~~l~h~~~~~~~~Wi~asdac~----------~f~q~e---~ 731 (1238)
T KOG1127|consen 689 KAVDFFE------------------------KSIESFIVSLIHSLQSDRLQWIVASDACY----------IFSQEE---P 731 (1238)
T ss_pred hhhHHHH------------------------HHHHHHHHHHHHhhhhhHHHHHHHhHHHH----------HHHHhc---c
Confidence 1222221 11222211111111112222222111111 111100 0
Q ss_pred CCCCCchhHHHHHHHHHHhcCCH---H---HHHHHHHhhccC-CCcccHHHHHHHhhc--------CCChHHHHHHHHhh
Q 002834 487 LLGDTEHNIGNAILDAYAKCRNI---K---YAFNVFQSLLEK-RNLVTFNPVISGYAN--------CGSADEAFMTFSRI 551 (875)
Q Consensus 487 ~~~~~~~~~~~~li~~~~~~g~~---~---~A~~~~~~~~~~-p~~~~~~~l~~~~~~--------~~~~~~A~~~~~~~ 551 (875)
+.|+......+..-.-+.+.. + -+.+.+-.-.+. -+..+|..++..|.+ ..+...|+..+.+.
T Consensus 732 --~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~Kka 809 (1238)
T KOG1127|consen 732 --SIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKA 809 (1238)
T ss_pred --cchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHH
Confidence 011111111111111111111 0 001111100000 134455555444332 12334677777776
Q ss_pred hcCCCcc---HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHH
Q 002834 552 YARDLTP---WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLN 628 (875)
Q Consensus 552 ~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 628 (875)
.+..... |+.|.-. ...|++.-|.--|-+-... -+-...+|..+--.|....+++.+...+.......|.+..-+
T Consensus 810 V~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~W 887 (1238)
T KOG1127|consen 810 VSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQW 887 (1238)
T ss_pred HHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHH
Confidence 5543333 6666555 5556665555555443322 122345666666677788888888888888888777766666
Q ss_pred HHHHHHhHhcCCHHHHHHHhccC-----CC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHC---------CCCCCh
Q 002834 629 GALLHLYAKCGSIFSASKIFQCH-----PQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLEL---------GVNPDH 691 (875)
Q Consensus 629 ~~l~~~~~~~g~~~~A~~~~~~~-----~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------g~~p~~ 691 (875)
-.........|+.-++..+|.-- .. ++..-|-.-......+|+.++-+...++.... |.+-+.
T Consensus 888 lG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~ 967 (1238)
T KOG1127|consen 888 LGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLC 967 (1238)
T ss_pred HHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchh
Confidence 55555566678888888887641 11 45555554444556677766655544443221 234445
Q ss_pred hhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHH----HHHHHhhcCCChHHHHHHHHhCCCCCCHHHHHHHHH
Q 002834 692 VVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYA----SLVDLLARGGQISDAYSLVNRMPVEADCNVWGTLLG 767 (875)
Q Consensus 692 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 767 (875)
..|.......-+.+....|.+...+.......+-+...|+ .....++..|.++.|..-....+..-+..+-.+-+.
T Consensus 968 fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~ 1047 (1238)
T KOG1127|consen 968 FAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLT 1047 (1238)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHH
Confidence 6677777777788888888887777654333334444444 345666778888888777666655555555554444
Q ss_pred HHHhcCChhHHHHHHHHHhcccCCCCcc---HHHHHHHHHhcCCchhHHHHHHHH
Q 002834 768 ACRIHHEVELGRVVANRLFEMEADNIGN---YVVMSNLYAADARWDGVVEIRKLM 819 (875)
Q Consensus 768 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~ 819 (875)
. .-.|+++.+...+++++.+-.++... .-.+++.....+.-+.|....-+.
T Consensus 1048 l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~ 1101 (1238)
T KOG1127|consen 1048 L-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEV 1101 (1238)
T ss_pred H-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHH
Confidence 4 45688999999999999886555442 233455556677777787754333
No 87
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=2.8e-06 Score=86.43 Aligned_cols=85 Identities=13% Similarity=0.102 Sum_probs=39.6
Q ss_pred HHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchh
Q 002834 734 VDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDG 811 (875)
Q Consensus 734 ~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 811 (875)
+..+-+.|++.+|+..+.++. ..| |+..|.+...++.+.|++..|..-.+..++++|+.+..|..-+-++....+|++
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydk 444 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDK 444 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Confidence 333444444554444444442 223 334444444444444555555544555555555444444444444444455555
Q ss_pred HHHHHHH
Q 002834 812 VVEIRKL 818 (875)
Q Consensus 812 A~~~~~~ 818 (875)
|.+.+..
T Consensus 445 Aleay~e 451 (539)
T KOG0548|consen 445 ALEAYQE 451 (539)
T ss_pred HHHHHHH
Confidence 5444443
No 88
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.95 E-value=6.8e-08 Score=101.61 Aligned_cols=238 Identities=14% Similarity=0.141 Sum_probs=158.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhhccC-----C-CcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCccHHHHHHHH
Q 002834 493 HNIGNAILDAYAKCRNIKYAFNVFQSLLEK-----R-NLVTFNPVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVY 566 (875)
Q Consensus 493 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~ 566 (875)
..+...+...|...|+++.|..+++..... . +......+ .+.+...|
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~---------------------------l~~~a~~y 251 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASM---------------------------LNILALVY 251 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHH---------------------------HHHHHHHH
Confidence 344555777777778888777777765442 0 00000000 22455666
Q ss_pred HHcCCchHHHHHHHHHHHC---CCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHH
Q 002834 567 AENDFPNQALSLFLKLQAQ---GMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFS 643 (875)
Q Consensus 567 ~~~~~~~~A~~~~~~m~~~---g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 643 (875)
...+++++|..+|+++..- ..-++... -..+++.|..+|.+.|++++
T Consensus 252 ~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~------------------------------va~~l~nLa~ly~~~GKf~E 301 (508)
T KOG1840|consen 252 RSLGKYDEAVNLYEEALTIREEVFGEDHPA------------------------------VAATLNNLAVLYYKQGKFAE 301 (508)
T ss_pred HHhccHHHHHHHHHHHHHHHHHhcCCCCHH------------------------------HHHHHHHHHHHHhccCChHH
Confidence 7888888888888876542 11122111 11233445556666666666
Q ss_pred HHHHhccCCC----------CChh-hHHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCCh----hhHHHHHHHHhhcC
Q 002834 644 ASKIFQCHPQ----------KDVV-MLTAMIGGYAMHGMGKAALKVFSDMLEL---GVNPDH----VVITAVLSACSHAG 705 (875)
Q Consensus 644 A~~~~~~~~~----------~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~----~~~~~ll~a~~~~g 705 (875)
|...+++..+ +++. .++.++..+...+++++|..+++...+. -+.++. .++..+...|.+.|
T Consensus 302 A~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~g 381 (508)
T KOG1840|consen 302 AEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMG 381 (508)
T ss_pred HHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhc
Confidence 6655554332 2332 4566777888899999999988876542 133333 46888899999999
Q ss_pred cHHHHHHHHHHhHHHh----C-CCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC--------CCCCH-HHHHHHHHHHH
Q 002834 706 LVDEGLEIFRSIEKVQ----G-IKPT-PEQYASLVDLLARGGQISDAYSLVNRMP--------VEADC-NVWGTLLGACR 770 (875)
Q Consensus 706 ~~~~a~~~~~~~~~~~----~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p~~-~~~~~l~~~~~ 770 (875)
++++|.++++++.... + ..+. ...++.|...|.+.+++++|.+++.+.. ..|+. .++.+|...|.
T Consensus 382 k~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~ 461 (508)
T KOG1840|consen 382 KYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYR 461 (508)
T ss_pred chhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHH
Confidence 9999999999987643 1 1232 3478899999999999998888887752 44554 77999999999
Q ss_pred hcCChhHHHHHHHHHhc
Q 002834 771 IHHEVELGRVVANRLFE 787 (875)
Q Consensus 771 ~~~~~~~a~~~~~~~~~ 787 (875)
..|+++.|+++.++++.
T Consensus 462 ~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 462 AQGNYEAAEELEEKVLN 478 (508)
T ss_pred HcccHHHHHHHHHHHHH
Confidence 99999999999998874
No 89
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.92 E-value=1.9e-07 Score=84.26 Aligned_cols=191 Identities=12% Similarity=0.031 Sum_probs=116.1
Q ss_pred hhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHH
Q 002834 601 CSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALK 677 (875)
Q Consensus 601 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 677 (875)
|...|+...|+.-++.+++..+.+...+..+...|.+.|+.+.|.+.|++..+ .+-.+.|....-+|..|++++|..
T Consensus 45 YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q 124 (250)
T COG3063 45 YLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQ 124 (250)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHH
Confidence 33334444444444444444444555556666667777777777777765543 344566666666777777777777
Q ss_pred HHHHHHHCCCCCC-hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCCh-hHHHHHHHHhhcCCChHHHHHHHHhCC-
Q 002834 678 VFSDMLELGVNPD-HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTP-EQYASLVDLLARGGQISDAYSLVNRMP- 754 (875)
Q Consensus 678 ~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~- 754 (875)
.|++......-|. ..||..+.-+..+.|+.+.|..+|++..+ +.|+. .....+.+.....|++-.|..+++...
T Consensus 125 ~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~ 201 (250)
T COG3063 125 QFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAPARLYLERYQQ 201 (250)
T ss_pred HHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHh
Confidence 7777766432222 34666666666777777777777777765 44543 366667777777777777777777664
Q ss_pred -CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCc
Q 002834 755 -VEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIG 794 (875)
Q Consensus 755 -~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 794 (875)
..++...+.-.+..-...||.+.+.+.-.++..+.|..+.
T Consensus 202 ~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 202 RGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred cccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 3344444444445555667777777777777777776543
No 90
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.92 E-value=2e-05 Score=83.84 Aligned_cols=482 Identities=12% Similarity=0.062 Sum_probs=225.2
Q ss_pred chhHhhhHHHHhHhcCChhHHHHHhhhcCC-----------CCc-cchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCC
Q 002834 285 DVSVCNALVSFYLRFGRTEEAELLFRRMKS-----------RDL-VSWNAIIAGYASNDEWLKALNLFCELITKEMIWPD 352 (875)
Q Consensus 285 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd 352 (875)
+..+|..|.+++.+..++|-|.-.+..|.. .|. ..-......-.+.|..++|..+|++..+.
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~------ 829 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRY------ 829 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH------
Confidence 445566666666666666666655555542 011 11111111223456666666666665442
Q ss_pred hhhHHHHHHHHhccCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcCCC--------------
Q 002834 353 SVTLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRR-------------- 418 (875)
Q Consensus 353 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------- 418 (875)
..+-+.|...|.+++|.++-+.--+... . .+|-....-+-..++.+.|++.|++...+
T Consensus 830 ----DLlNKlyQs~g~w~eA~eiAE~~DRiHL--r--~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~ 901 (1416)
T KOG3617|consen 830 ----DLLNKLYQSQGMWSEAFEIAETKDRIHL--R--NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQ 901 (1416)
T ss_pred ----HHHHHHHHhcccHHHHHHHHhhccceeh--h--hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHH
Confidence 2333444555666666555432111111 0 13333444444455666666666554221
Q ss_pred ---------CcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHHHhcCCCC
Q 002834 419 ---------DLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLG 489 (875)
Q Consensus 419 ---------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 489 (875)
|...|.-...-+-..|+.+.|+.+|....+ |-++++..+-.|+.++|.++-++
T Consensus 902 ~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e--------- 963 (1416)
T KOG3617|consen 902 IEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE--------- 963 (1416)
T ss_pred HHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh---------
Confidence 223333333444456677777777666543 34555555667777777776655
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC---------C--CcccHHH-------------------------HHH
Q 002834 490 DTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEK---------R--NLVTFNP-------------------------VIS 533 (875)
Q Consensus 490 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------p--~~~~~~~-------------------------l~~ 533 (875)
..+......+.+.|-..|++.+|..+|.+...- . +...||. .+.
T Consensus 964 sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVm 1043 (1416)
T KOG3617|consen 964 SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVM 1043 (1416)
T ss_pred cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHH
Confidence 445555667777788888888888777664321 0 0111111 111
Q ss_pred HhhcCCChHHHHHHHHhh------------hcCCCcc--HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHH
Q 002834 534 GYANCGSADEAFMTFSRI------------YARDLTP--WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLP 599 (875)
Q Consensus 534 ~~~~~~~~~~A~~~~~~~------------~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 599 (875)
.|-+.|.+.+|+++--+- ..++..| .+.-...++.+.++++|..++-...+ |...++
T Consensus 1044 LYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~Alq 1114 (1416)
T KOG3617|consen 1044 LYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQ 1114 (1416)
T ss_pred HHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHH
Confidence 122333333332221000 1111111 44444555555666666555544322 122222
Q ss_pred HhhcccchHHHHHHHHHHHHh---cCC---CchHHHHHHHHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChH
Q 002834 600 VCSQMASVHLLRQCHGYVIRA---CFD---GVRLNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGK 673 (875)
Q Consensus 600 a~~~~~~~~~a~~~~~~~~~~---~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 673 (875)
.|...+ +..-.++-+.+... .++ ...+...+.+.+.++|.+..|-+-|.+.-.+ -..+.++.+.|+.+
T Consensus 1115 lC~~~n-v~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK-----l~AMraLLKSGdt~ 1188 (1416)
T KOG3617|consen 1115 LCKNRN-VRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK-----LSAMRALLKSGDTQ 1188 (1416)
T ss_pred HHhcCC-CchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH-----HHHHHHHHhcCCcc
Confidence 222221 11111111111111 111 2345566777777778777777776654321 12344555555544
Q ss_pred HHHH---------H----HHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcC
Q 002834 674 AALK---------V----FSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARG 740 (875)
Q Consensus 674 ~A~~---------~----~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 740 (875)
+..- + -+-+.....+-|+.+...++.-|.+..-+|---.+|..... + .++.|..+-.+ .
T Consensus 1189 KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~tFYTKgqafd~LanFY~~cAq---i--Eiee~q~ydKa---~ 1260 (1416)
T KOG3617|consen 1189 KIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIETFYTKGQAFDHLANFYKSCAQ---I--EIEELQTYDKA---M 1260 (1416)
T ss_pred eEEEEeeccccceeeeehhhhhhhcccccChHHHhhhHhhhhcchhHHHHHHHHHHHHH---h--hHHHHhhhhHH---h
Confidence 3210 0 01112222344455555555444444444443333433322 1 12222222111 3
Q ss_pred CChHHHHHHHHhCCCCCCH-HHHH----------HHHHHHHhcC-ChhHHHHHHHHHhcccCCCC------ccHHHHHHH
Q 002834 741 GQISDAYSLVNRMPVEADC-NVWG----------TLLGACRIHH-EVELGRVVANRLFEMEADNI------GNYVVMSNL 802 (875)
Q Consensus 741 g~~~~A~~~~~~~~~~p~~-~~~~----------~l~~~~~~~~-~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~ 802 (875)
|-+++|.+.+.++..+.+. ..++ ..+...+..+ |....+.-.+.+++ +|..+ ..|-.|..-
T Consensus 1261 gAl~eA~kCl~ka~~k~~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lle-ep~ld~~Ir~~~~~a~lie~ 1339 (1416)
T KOG3617|consen 1261 GALEEAAKCLLKAEQKNMSTTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLE-EPILDDIIRCTRLFALLIED 1339 (1416)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh-CcCCCCcchhHHHHHHHHHH
Confidence 4455666665555422222 2222 2233332222 44444444444444 45443 246678888
Q ss_pred HHhcCCchhHHHHHHHHHhC
Q 002834 803 YAADARWDGVVEIRKLMKTR 822 (875)
Q Consensus 803 ~~~~g~~~~A~~~~~~~~~~ 822 (875)
|....+|..|-+.++.|+.+
T Consensus 1340 ~v~~k~y~~AyRal~el~~k 1359 (1416)
T KOG3617|consen 1340 HVSRKNYKPAYRALTELQKK 1359 (1416)
T ss_pred HHhhhhccHHHHHHHHHhhc
Confidence 99999999999999988753
No 91
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.89 E-value=1.1e-05 Score=83.89 Aligned_cols=413 Identities=10% Similarity=0.033 Sum_probs=203.8
Q ss_pred cCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcCC---CCcchHHHHHHHHhccCChhHHHHH
Q 002834 366 LKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICR---RDLISWNSMLDAFSESGYNSQFLNL 442 (875)
Q Consensus 366 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~ 442 (875)
.+++..+....+.+++.- +....+.....-.+...|+.++|......-.. ++.+.|..+.-.+-...++++|+..
T Consensus 20 ~kQYkkgLK~~~~iL~k~--~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKKF--PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHhHHHHHHHHHHhC--CccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 344444444454444421 11111333333345556777777777766544 3556788888888888889999999
Q ss_pred HHHHHHCCCCCChh-hHHHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 002834 443 LNCMLMEGIRPDSI-TILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLE 521 (875)
Q Consensus 443 ~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 521 (875)
|+..+.. .||.. .+.-+--.-++.++.+..........+.. +.....+..+..++.-.|++..|..++++..+
T Consensus 98 y~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~----~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~ 171 (700)
T KOG1156|consen 98 YRNALKI--EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR----PSQRASWIGFAVAQHLLGEYKMALEILEEFEK 171 (700)
T ss_pred HHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888764 34433 33222222234455554444444444332 33334455666666667777777777766554
Q ss_pred C----CCcccHHHHH------HHhhcCCChHHHHHHHHhhhcCC---CccHHHHHHHHHHcCCchHHHHHHHHHHHCCCC
Q 002834 522 K----RNLVTFNPVI------SGYANCGSADEAFMTFSRIYARD---LTPWNLMIRVYAENDFPNQALSLFLKLQAQGMK 588 (875)
Q Consensus 522 ~----p~~~~~~~l~------~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~ 588 (875)
. |+...+.-.. ....+.|..++|.+.+..-.+.- ...-.+-...+.+.+++++|..++..+... .
T Consensus 172 t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--n 249 (700)
T KOG1156|consen 172 TQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--N 249 (700)
T ss_pred hhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--C
Confidence 2 3333322211 22344555566655555443321 111334455566666666666666666654 4
Q ss_pred CCcchHhcHHHHhh-c-ccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHH
Q 002834 589 PDAVTIMSLLPVCS-Q-MASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGY 666 (875)
Q Consensus 589 p~~~~~~~ll~a~~-~-~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 666 (875)
||.+-|...+..|. . .+.......++......-+.... |-....+.+
T Consensus 250 Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~---------------------------p~Rlplsvl---- 298 (700)
T KOG1156|consen 250 PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHEC---------------------------PRRLPLSVL---- 298 (700)
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccccc---------------------------chhccHHHh----
Confidence 55555544433222 1 11111111222222211111000 000001000
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHH----HHHHHHHhHHHhC----------CCCChh--HH
Q 002834 667 AMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDE----GLEIFRSIEKVQG----------IKPTPE--QY 730 (875)
Q Consensus 667 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~----a~~~~~~~~~~~~----------~~p~~~--~~ 730 (875)
-...-.+..-+++..+.+.|+++-...+.++.. .-...+- +..+...+.. .| -+|+.. ++
T Consensus 299 ~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk---~p~k~~~le~Lvt~y~~~L~~-~~~f~~~D~~~~E~PttllWt~ 374 (700)
T KOG1156|consen 299 NGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYK---DPEKVAFLEKLVTSYQHSLSG-TGMFNFLDDGKQEPPTTLLWTL 374 (700)
T ss_pred CcchhHHHHHHHHHHHhhcCCCchhhhhHHHHh---chhHhHHHHHHHHHHHhhccc-ccCCCcccccccCCchHHHHHH
Confidence 001112233344555666665554333333322 1111111 1111111111 00 123322 45
Q ss_pred HHHHHHhhcCCChHHHHHHHHhCC-CCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCC
Q 002834 731 ASLVDLLARGGQISDAYSLVNRMP-VEADC-NVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADAR 808 (875)
Q Consensus 731 ~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 808 (875)
..++..+-+.|+++.|..+++... ..|.. ..|..-...+.-.|+++.|-..++.+.++|-.|-...-.-+.-..++.+
T Consensus 375 y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~ 454 (700)
T KOG1156|consen 375 YFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANE 454 (700)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccc
Confidence 566667777777777777777664 44443 3333334555556777777777777777776666655566666677777
Q ss_pred chhHHHHHHHHHhCC
Q 002834 809 WDGVVEIRKLMKTRD 823 (875)
Q Consensus 809 ~~~A~~~~~~~~~~~ 823 (875)
.++|.++.......|
T Consensus 455 i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 455 IEEAEEVLSKFTREG 469 (700)
T ss_pred cHHHHHHHHHhhhcc
Confidence 777777766665444
No 92
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.88 E-value=1.8e-05 Score=84.20 Aligned_cols=248 Identities=13% Similarity=0.154 Sum_probs=123.6
Q ss_pred HHHccCCchHHHHhhccCCCCCchhHHHHHHHHhcCCCChhHHHHHHHHhHhcCCC-------CCCcchHHHHHHHhhcc
Q 002834 87 LYAKCGVIDDCYKLFGQVDNTDPVTWNILLSGFACSHVDDARVMNLFYNMHVRDQP-------KPNSVTVAIVLSACARL 159 (875)
Q Consensus 87 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~-------~~~~~~~~~ll~~~~~~ 159 (875)
.|.--|++|.|.+-.+.+. .-..|..|-+.+.+.. +.+-|.-.+..|....+. +-+..+-.-+.-.....
T Consensus 737 fyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~-RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieL 813 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTR-RLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIEL 813 (1416)
T ss_pred EEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhc-cccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHH
Confidence 3444555555555444332 2234555555555554 444444444444322110 11112222233334566
Q ss_pred CCcchhhhHHHHHHHhCCCCCcchhhHHHHHhHhcCChhHHHHHhccCCCCC-eeeHHHHHHHHHcCCCcchHHHHHHHH
Q 002834 160 GGIFAGKSLHAYVIKFGLERHTLVGNSLTSMYAKRGLVHDAYSVFDSIEDKD-VVSWNAVISGLSENKVLGDAFRLFSWM 238 (875)
Q Consensus 160 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~l~~~m 238 (875)
|.+++|..++.+-.+.+ .|=..|...|.+++|.++-+.-.+-. ..||..-..-+-..++.+.|++.|++-
T Consensus 814 gMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred hhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhc
Confidence 78888888887765543 45567788899999988876533211 224555555556678888888888764
Q ss_pred HhCCCCCChhhHHhHHHHhccCCccccccchhHHHHHHHHhcccCCchhHhhhHHHHhHhcCChhHHHHHhhhcCCCCcc
Q 002834 239 LTEPIKPNYATILNILPICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAELLFRRMKSRDLV 318 (875)
Q Consensus 239 ~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 318 (875)
.. |-...+ .+|. .. . .++-.++.+. .|...|.--....-..|++|.|+.++....
T Consensus 885 ~~----hafev~-rmL~---e~-----p---~~~e~Yv~~~----~d~~L~~WWgqYlES~GemdaAl~~Y~~A~----- 939 (1416)
T KOG3617|consen 885 GV----HAFEVF-RMLK---EY-----P---KQIEQYVRRK----RDESLYSWWGQYLESVGEMDAALSFYSSAK----- 939 (1416)
T ss_pred CC----hHHHHH-HHHH---hC-----h---HHHHHHHHhc----cchHHHHHHHHHHhcccchHHHHHHHHHhh-----
Confidence 21 100000 0000 00 0 0011111110 144444444444455677777777666543
Q ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChhhHHHHHHH
Q 002834 319 SWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIHGY 378 (875)
Q Consensus 319 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~ 378 (875)
-|-++++..|-.|+.++|-.+-++ . -|......+.+.|-..|++.+|..+|-.
T Consensus 940 D~fs~VrI~C~qGk~~kAa~iA~e---s----gd~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 940 DYFSMVRIKCIQGKTDKAARIAEE---S----GDKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred hhhhheeeEeeccCchHHHHHHHh---c----ccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 244555555566666666555443 2 2444444455555555555555555543
No 93
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=1.4e-06 Score=88.48 Aligned_cols=448 Identities=14% Similarity=0.059 Sum_probs=246.1
Q ss_pred HhHhcCChhHHHHHhhhcC---CCCccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCC-hhhHHHHHHHHhccCChh
Q 002834 295 FYLRFGRTEEAELLFRRMK---SRDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPD-SVTLVSLLPACAYLKNLK 370 (875)
Q Consensus 295 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd-~~t~~~ll~~~~~~~~~~ 370 (875)
+.+..|+++.|+..|.... .+|.+.|+.-..+|++.|++++|++=-.+-++. .|+ ..-|.-.-.++.-.|+++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l---~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL---NPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc---CCchhhHHHHhHHHHHhcccHH
Confidence 4466788888888887654 357778888888888888888888776666654 355 345666666777778888
Q ss_pred hHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhH-HHHHHHhcCCCCcchHHHHH-----HHHhccCChhHHHHHHH
Q 002834 371 VGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEA-AYRTFLMICRRDLISWNSML-----DAFSESGYNSQFLNLLN 444 (875)
Q Consensus 371 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~li-----~~~~~~g~~~~a~~~~~ 444 (875)
+|..-|..-++. .+++...++.|.+++ ..+. +.+.|. ++..|..+. ..+...-.+..-++.+
T Consensus 88 eA~~ay~~GL~~--d~~n~~L~~gl~~a~----~~~~~~~~~~~-----~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~- 155 (539)
T KOG0548|consen 88 EAILAYSEGLEK--DPSNKQLKTGLAQAY----LEDYAADQLFT-----KPYFHEKLANLPLTNYSLSDPAYVKILEII- 155 (539)
T ss_pred HHHHHHHHHhhc--CCchHHHHHhHHHhh----hHHHHhhhhcc-----CcHHHHHhhcChhhhhhhccHHHHHHHHHh-
Confidence 888777766655 344444666666665 1111 111111 111111111 1111111111100000
Q ss_pred HHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHHHh--------cCCCCCCchhHHHHHHHHHHhcCC-HHHHHHH
Q 002834 445 CMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKT--------GLLLGDTEHNIGNAILDAYAKCRN-IKYAFNV 515 (875)
Q Consensus 445 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~ 515 (875)
. ..|+..- .+. ......+.+..+... +....++...-........-..++ .++..
T Consensus 156 ---~--~~p~~l~------~~l---~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~-- 219 (539)
T KOG0548|consen 156 ---Q--KNPTSLK------LYL---NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERR-- 219 (539)
T ss_pred ---h--cCcHhhh------ccc---ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHH--
Confidence 0 0111100 000 001111111111100 000000000000000000000000 00000
Q ss_pred HHhhccCCCcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCcc--HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcch
Q 002834 516 FQSLLEKRNLVTFNPVISGYANCGSADEAFMTFSRIYARDLTP--WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVT 593 (875)
Q Consensus 516 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 593 (875)
.+--..-...+.++..+..+++.|++-+......+... ++....+|...|...++...-....+.|-.. ..-
T Consensus 220 -----~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~-rad 293 (539)
T KOG0548|consen 220 -----VKEKAHKEKELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGREL-RAD 293 (539)
T ss_pred -----HHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH-HHH
Confidence 00011223456666777778888888887776655222 6777777888888777776666655444211 111
Q ss_pred HhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChH
Q 002834 594 IMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGK 673 (875)
Q Consensus 594 ~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 673 (875)
|+.+-.++ ..+...|.+.++++.|...|.+...+... -....+....+
T Consensus 294 ~klIak~~---------------------------~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~E 341 (539)
T KOG0548|consen 294 YKLIAKAL---------------------------ARLGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAE 341 (539)
T ss_pred HHHHHHHH---------------------------HHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHH
Confidence 11111111 11345777788889998888875531111 11122333455
Q ss_pred HHHHHHHHHHHCCCCCChhh-HHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHH
Q 002834 674 AALKVFSDMLELGVNPDHVV-ITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVN 751 (875)
Q Consensus 674 ~A~~~~~~m~~~g~~p~~~~-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 751 (875)
+++...+...- +.|.... ...-...+.+.|++..|...|.++.. ..|+ ...|+...-+|.+.|.+.+|++-.+
T Consensus 342 k~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk---r~P~Da~lYsNRAac~~kL~~~~~aL~Da~ 416 (539)
T KOG0548|consen 342 KALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK---RDPEDARLYSNRAACYLKLGEYPEALKDAK 416 (539)
T ss_pred HHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh---cCCchhHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 56555555444 3444321 22235678899999999999999987 3354 5699999999999999999998877
Q ss_pred hCC-CCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHH
Q 002834 752 RMP-VEADC-NVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIR 816 (875)
Q Consensus 752 ~~~-~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 816 (875)
... ..|+. ..|..-+.++...++++.|.++|+++++.+|++......+...+..+...+...++.
T Consensus 417 ~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~ 483 (539)
T KOG0548|consen 417 KCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETK 483 (539)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHH
Confidence 764 55543 666666677777899999999999999999999998888888877754444444443
No 94
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.79 E-value=9.5e-08 Score=97.67 Aligned_cols=214 Identities=12% Similarity=0.076 Sum_probs=159.6
Q ss_pred ccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHH
Q 002834 604 MASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFS 680 (875)
Q Consensus 604 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 680 (875)
.|++..|.-.++..++..+.+...|.-|.......++-..|+..+.+..+ .|..+.-.|.-.|...|.-.+|+..++
T Consensus 298 nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~ 377 (579)
T KOG1125|consen 298 NGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLD 377 (579)
T ss_pred cCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 34455555555555666666666777777777777777777777776655 355677777788888888888999888
Q ss_pred HHHHCCCC-----C---ChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHh
Q 002834 681 DMLELGVN-----P---DHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNR 752 (875)
Q Consensus 681 ~m~~~g~~-----p---~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 752 (875)
..+...++ + +..+-.. ..+..........++|-++....+.++|+....+|+-+|.-.|.++.|.+.|+.
T Consensus 378 ~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~ 455 (579)
T KOG1125|consen 378 KWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEA 455 (579)
T ss_pred HHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHH
Confidence 88764211 0 1000000 122333345556667777766567668888999999999999999999999999
Q ss_pred CC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHH-HHHH
Q 002834 753 MP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEI-RKLM 819 (875)
Q Consensus 753 ~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~ 819 (875)
+. .+| |...|+-|...+....+.+.|+.+|.+++++.|.......-||-.|...|-|.||.+. +.++
T Consensus 456 AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 456 ALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 85 677 5688999999888888999999999999999999999999999999999999999995 4444
No 95
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.76 E-value=4.3e-06 Score=89.55 Aligned_cols=293 Identities=12% Similarity=0.058 Sum_probs=186.0
Q ss_pred HHHHHhcCCChhHHHHHHHhcCCC--Cc-chHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCch
Q 002834 395 LVSFYAKCSDMEAAYRTFLMICRR--DL-ISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLRE 471 (875)
Q Consensus 395 li~~~~~~g~~~~A~~~~~~~~~~--~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 471 (875)
....+...|++++|++.++.-... |. .........+.+.|+.++|..+|+.+++.+ |+...|-..+..|.....
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~- 86 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQL- 86 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhc-
Confidence 345567789999999998775442 33 345567778888999999999999998874 666666444443321100
Q ss_pred hhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-CCcccHHHHHHHhhcCCChH-HHHHHHH
Q 002834 472 GMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEK-RNLVTFNPVISGYANCGSAD-EAFMTFS 549 (875)
Q Consensus 472 ~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~-~A~~~~~ 549 (875)
+ ......+...++++++..+ |...+...+.-.+.....+. .+...+.
T Consensus 87 -------------~------------------~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~ 135 (517)
T PF12569_consen 87 -------------Q------------------LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLR 135 (517)
T ss_pred -------------c------------------cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHH
Confidence 0 0111234444455544433 32222222222222211222 2333444
Q ss_pred hhhcCCCcc-HHHHHHHHHHcCCchHHHHHHHHHHHC----C----------CCCCc--chHhcHHHHhhcccchHHHHH
Q 002834 550 RIYARDLTP-WNLMIRVYAENDFPNQALSLFLKLQAQ----G----------MKPDA--VTIMSLLPVCSQMASVHLLRQ 612 (875)
Q Consensus 550 ~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~m~~~----g----------~~p~~--~~~~~ll~a~~~~~~~~~a~~ 612 (875)
.+...++.+ |+.+-..|.......-..+++...... + -.|+. .++..+-+.+...|+.+.|.+
T Consensus 136 ~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~ 215 (517)
T PF12569_consen 136 PQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALE 215 (517)
T ss_pred HHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 455556555 555555555444444444455444322 1 12332 244556677888999999999
Q ss_pred HHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 002834 613 CHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQK---DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNP 689 (875)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 689 (875)
+.+.++.+.+..+..+..-...|-+.|++.+|.+.++....- |...=+-.+..+.+.|+.++|.+++......+..|
T Consensus 216 ~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~ 295 (517)
T PF12569_consen 216 YIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDP 295 (517)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCc
Confidence 999999998888999999999999999999999999987763 44555567788889999999999999888766544
Q ss_pred Chh------hH--HHHHHHHhhcCcHHHHHHHHHHhHHHh
Q 002834 690 DHV------VI--TAVLSACSHAGLVDEGLEIFRSIEKVQ 721 (875)
Q Consensus 690 ~~~------~~--~~ll~a~~~~g~~~~a~~~~~~~~~~~ 721 (875)
-.. .| .-...+|.+.|++..|++.|..+.+.+
T Consensus 296 ~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 296 LSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 321 11 334558888999999998888776643
No 96
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.74 E-value=1.2e-05 Score=76.87 Aligned_cols=289 Identities=14% Similarity=0.084 Sum_probs=169.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhhccCCCcccHHHHH---HHhhcCCChHHHHHHHHhhhcCCCccHHH---HHHHHHHcCCc
Q 002834 499 ILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVI---SGYANCGSADEAFMTFSRIYARDLTPWNL---MIRVYAENDFP 572 (875)
Q Consensus 499 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~---~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---l~~~~~~~~~~ 572 (875)
+-..+...|.+..|+.-|.....- |+..|-++. ..|...|+...|+.-+.++.+..+..+.. -...+.+.|.+
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~-dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gel 122 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEG-DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGEL 122 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcC-CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccH
Confidence 444555566677777777666655 444444433 35666677777777676665555444332 23456777777
Q ss_pred hHHHHHHHHHHHCCCCCCcc----------------hHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhH
Q 002834 573 NQALSLFLKLQAQGMKPDAV----------------TIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYA 636 (875)
Q Consensus 573 ~~A~~~~~~m~~~g~~p~~~----------------~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 636 (875)
++|..=|+...+.. |+.. .....+..+...|+...+......+....+-+..++..-..+|.
T Consensus 123 e~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i 200 (504)
T KOG0624|consen 123 EQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYI 200 (504)
T ss_pred HHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHH
Confidence 77777777766542 2211 12222333444566666666666666666666666667777777
Q ss_pred hcCCHHHHHHHhccC---CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHH-------------HHH
Q 002834 637 KCGSIFSASKIFQCH---PQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAV-------------LSA 700 (875)
Q Consensus 637 ~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-------------l~a 700 (875)
..|++..|+.-+... ...+..+..-+-..+...|+.+.++...++.++ +.||....... ...
T Consensus 201 ~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~ 278 (504)
T KOG0624|consen 201 AEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQ 278 (504)
T ss_pred hcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 777777776555433 334555555556666677777777777777666 46664321111 112
Q ss_pred HhhcCcHHHHHHHHHHhHHHhCCCCC-----hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcC
Q 002834 701 CSHAGLVDEGLEIFRSIEKVQGIKPT-----PEQYASLVDLLARGGQISDAYSLVNRMP-VEAD-CNVWGTLLGACRIHH 773 (875)
Q Consensus 701 ~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~ 773 (875)
....++|.++++..+...+ ..|. ...+..+..++...|++-+|++...+.. ..|| ..++.--..+|...-
T Consensus 279 ~ie~~~~t~cle~ge~vlk---~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE 355 (504)
T KOG0624|consen 279 AIEEKHWTECLEAGEKVLK---NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDE 355 (504)
T ss_pred HHhhhhHHHHHHHHHHHHh---cCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhH
Confidence 2334556666655555544 3333 1234445566666777777777776664 4554 566666666676667
Q ss_pred ChhHHHHHHHHHhcccCCCCcc
Q 002834 774 EVELGRVVANRLFEMEADNIGN 795 (875)
Q Consensus 774 ~~~~a~~~~~~~~~~~p~~~~~ 795 (875)
.++.|+.-|+++.+.+|+|-.+
T Consensus 356 ~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 356 MYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred HHHHHHHHHHHHHhcCcccHHH
Confidence 7777777777777777766443
No 97
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.72 E-value=6.9e-06 Score=86.95 Aligned_cols=193 Identities=11% Similarity=-0.022 Sum_probs=103.0
Q ss_pred HHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCh--hhHHHHHHHHh
Q 002834 629 GALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGV-NPDH--VVITAVLSACS 702 (875)
Q Consensus 629 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~~~~~ll~a~~ 702 (875)
..+...+...|++++|...+++..+ .+...+..+...|...|++++|+.++++...... .|+. ..|..+...+.
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 3444556666777777666665543 2344566666667777777777777776665321 1221 12334555666
Q ss_pred hcCcHHHHHHHHHHhHHHhCCCCChhHH-H--HHHHHhhcCCChHHHHHH--H-HhC-CCCCC---HHHHHHHHHHHHhc
Q 002834 703 HAGLVDEGLEIFRSIEKVQGIKPTPEQY-A--SLVDLLARGGQISDAYSL--V-NRM-PVEAD---CNVWGTLLGACRIH 772 (875)
Q Consensus 703 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~--~l~~~~~~~g~~~~A~~~--~-~~~-~~~p~---~~~~~~l~~~~~~~ 772 (875)
..|++++|..+++++.......+..... . .+...+...|..+.+.++ + ... +..|. .........++...
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 277 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGA 277 (355)
T ss_pred HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcC
Confidence 7777777777777664311111111111 1 222333334432222222 1 111 11011 11112344445566
Q ss_pred CChhHHHHHHHHHhcccC---------CCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 773 HEVELGRVVANRLFEMEA---------DNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 773 ~~~~~a~~~~~~~~~~~p---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
|+.+.|....+.+....- .........+.++...|++++|.+.+.....
T Consensus 278 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 278 GDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred CCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777766644321 1345567889999999999999997666554
No 98
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.72 E-value=9.6e-07 Score=86.97 Aligned_cols=59 Identities=7% Similarity=-0.104 Sum_probs=51.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhcccCCCC---ccHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 002834 764 TLLGACRIHHEVELGRVVANRLFEMEADNI---GNYVVMSNLYAADARWDGVVEIRKLMKTR 822 (875)
Q Consensus 764 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 822 (875)
.+...+...|+.+.|+..++++++..|+++ ..+..++.+|...|++++|.+.++.+..+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345567788999999999999999988764 68899999999999999999999888654
No 99
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.72 E-value=4.5e-07 Score=90.20 Aligned_cols=156 Identities=14% Similarity=0.141 Sum_probs=110.3
Q ss_pred HHHHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhh----cCc
Q 002834 631 LLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSH----AGL 706 (875)
Q Consensus 631 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~----~g~ 706 (875)
...+|...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+ +..|.. ...+..++.. .+.
T Consensus 108 ~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~~-l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 108 AATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDSI-LTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCHH-HHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcHH-HHHHHHHHHHHHhCchh
Confidence 335667789999999888876 4566667788889999999999999999987 344443 3334443332 236
Q ss_pred HHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCh-hHHHHHHH
Q 002834 707 VDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEV-ELGRVVAN 783 (875)
Q Consensus 707 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~-~~a~~~~~ 783 (875)
+.+|..+|+++.+ ...+++...+.++.++...|++++|.+++++.. ..| ++.++.+++-++...|+. +.+.+...
T Consensus 183 ~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 8889999999866 345677788888888889999999998888763 344 456677776666666766 66778888
Q ss_pred HHhcccCCCC
Q 002834 784 RLFEMEADNI 793 (875)
Q Consensus 784 ~~~~~~p~~~ 793 (875)
++....|++|
T Consensus 261 qL~~~~p~h~ 270 (290)
T PF04733_consen 261 QLKQSNPNHP 270 (290)
T ss_dssp HCHHHTTTSH
T ss_pred HHHHhCCCCh
Confidence 8888888755
No 100
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.66 E-value=4.3e-07 Score=80.44 Aligned_cols=121 Identities=13% Similarity=0.053 Sum_probs=89.3
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-
Q 002834 677 KVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP- 754 (875)
Q Consensus 677 ~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 754 (875)
.+|++.++ +.|+. +.....++...|++++|...|+.+.. +.|+ ...|..++.++.+.|++++|...+++..
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 45666655 45554 44456677788888888888888766 5554 4577788888888888888888888874
Q ss_pred CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHH
Q 002834 755 VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYA 804 (875)
Q Consensus 755 ~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 804 (875)
..| ++..|..+..++...|+.+.|+..+++++++.|+++..+...+++..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 444 55777777777888888888888888888888888888877766543
No 101
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.65 E-value=1.6e-06 Score=81.33 Aligned_cols=145 Identities=11% Similarity=0.198 Sum_probs=113.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCC-ChhHHHHHHHHhhcCC
Q 002834 663 IGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKP-TPEQYASLVDLLARGG 741 (875)
Q Consensus 663 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 741 (875)
+..|...|+++.+....+.+.. |. ..+...++.+++...+++..+ ..| +...|..++..|...|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~---~~P~~~~~w~~Lg~~~~~~g 87 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR---ANPQNSEQWALLGEYYLWRN 87 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCC
Confidence 4567888888886554433221 11 122236677888888887766 344 4668999999999999
Q ss_pred ChHHHHHHHHhCC-CCC-CHHHHHHHHHHH-HhcCC--hhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHH
Q 002834 742 QISDAYSLVNRMP-VEA-DCNVWGTLLGAC-RIHHE--VELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIR 816 (875)
Q Consensus 742 ~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 816 (875)
++++|...+++.. ..| +...+..+..+. ...|+ .+.|.+.++++++.+|+++.++..+|..+...|++++|+..+
T Consensus 88 ~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 88 DYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999884 556 567888888764 56676 599999999999999999999999999999999999999999
Q ss_pred HHHHhC
Q 002834 817 KLMKTR 822 (875)
Q Consensus 817 ~~~~~~ 822 (875)
+++.+.
T Consensus 168 ~~aL~l 173 (198)
T PRK10370 168 QKVLDL 173 (198)
T ss_pred HHHHhh
Confidence 998764
No 102
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.60 E-value=2.5e-05 Score=74.64 Aligned_cols=289 Identities=12% Similarity=0.122 Sum_probs=214.8
Q ss_pred HHHHHHHhhcCCChHHHHHHHHhhhcCCCccHHHHH---HHHHHcCCchHHHHHHHHHHHCCCCCCcchHh-cHHHHhhc
Q 002834 528 FNPVISGYANCGSADEAFMTFSRIYARDLTPWNLMI---RVYAENDFPNQALSLFLKLQAQGMKPDAVTIM-SLLPVCSQ 603 (875)
Q Consensus 528 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~a~~~ 603 (875)
.-.+...+...|++..|+.-|....+.|+..|.++. ..|...|+...|+.=+.+..+ ++||-..-. .--....+
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhh
Confidence 344566778889999999999999999999976654 578999999999999988876 478743221 11124567
Q ss_pred ccchHHHHHHHHHHHHhcCC-C--chHH------------HHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHH
Q 002834 604 MASVHLLRQCHGYVIRACFD-G--VRLN------------GALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGG 665 (875)
Q Consensus 604 ~~~~~~a~~~~~~~~~~~~~-~--~~~~------------~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 665 (875)
.|.++.|..=|..+.+..+. . ...+ ...+..+.-.|+...|+.....+.+ .|...|..-..+
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc 198 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKC 198 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHH
Confidence 89999999999999988775 1 1121 2233345557888888888887765 577888888999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChh-HH---HHH--------
Q 002834 666 YAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPE-QY---ASL-------- 733 (875)
Q Consensus 666 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~---~~l-------- 733 (875)
|...|.+..|+.=++..-+.. .-+..++.-+-..+...|+.+.++...+++.+ +.||.. +| -.+
T Consensus 199 ~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK---ldpdHK~Cf~~YKklkKv~K~le 274 (504)
T KOG0624|consen 199 YIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK---LDPDHKLCFPFYKKLKKVVKSLE 274 (504)
T ss_pred HHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc---cCcchhhHHHHHHHHHHHHHHHH
Confidence 999999999998888877642 33445555666688899999999998888865 788743 22 221
Q ss_pred -HHHhhcCCChHHHHHHHHhC-CCCCCH--HHHH---HHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhc
Q 002834 734 -VDLLARGGQISDAYSLVNRM-PVEADC--NVWG---TLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAAD 806 (875)
Q Consensus 734 -~~~~~~~g~~~~A~~~~~~~-~~~p~~--~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 806 (875)
+....+.++|.++.+-.++. ...|.. ..++ .+-.+++..+++.+|++....+++.+|+|..++..-+.+|...
T Consensus 275 s~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~d 354 (504)
T KOG0624|consen 275 SAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGD 354 (504)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhh
Confidence 22345677888877776665 356652 2222 2334445678999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhC
Q 002834 807 ARWDGVVEIRKLMKTR 822 (875)
Q Consensus 807 g~~~~A~~~~~~~~~~ 822 (875)
..|++|+.-+++..+.
T Consensus 355 E~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 355 EMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999987776653
No 103
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=2.9e-05 Score=72.74 Aligned_cols=372 Identities=12% Similarity=0.045 Sum_probs=202.0
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHhcCC--CCcchHHH-HHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhc
Q 002834 391 VGNALVSFYAKCSDMEAAYRTFLMICR--RDLISWNS-MLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTT 467 (875)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 467 (875)
..+.|..+|-...++..|-..++++.. |...-|.. -..++.+.+.+.+|+.+...|.+. |+...-.
T Consensus 46 gLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~-------- 114 (459)
T KOG4340|consen 46 GLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRV-------- 114 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHH--------
Confidence 445555666666666666666666543 22222221 234455666677777777666442 1100000
Q ss_pred cCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcccHHHHHHHhhcCCChHHHHHH
Q 002834 468 VLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFMT 547 (875)
Q Consensus 468 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~ 547 (875)
...-.......+++..+..+.++.+...+..+.+...-...+.|+++.|.+-
T Consensus 115 ----------------------------lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 115 ----------------------------LQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred ----------------------------HHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHH
Confidence 0000111234577777777777777543444444444445678888888888
Q ss_pred HHhhhcCC-Ccc---HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcch----HhcHHHHhhcccchHHHHHHHHHHHH
Q 002834 548 FSRIYARD-LTP---WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVT----IMSLLPVCSQMASVHLLRQCHGYVIR 619 (875)
Q Consensus 548 ~~~~~~~~-~~~---~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~----~~~ll~a~~~~~~~~~a~~~~~~~~~ 619 (875)
|+...+-+ ..| |+.-+ +..+.++++.|++...++.+.|++-.+.. -+..+.+ ..+..-..++...
T Consensus 167 FqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv----rsvgNt~~lh~Sa-- 239 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV----RSVGNTLVLHQSA-- 239 (459)
T ss_pred HHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch----hcccchHHHHHHH--
Confidence 88876543 333 55444 44677899999999999999887643221 0011110 0000001111111
Q ss_pred hcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC-----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhH
Q 002834 620 ACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ-----KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVI 694 (875)
Q Consensus 620 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 694 (875)
-...+|.-...+.+.|+.+.|.+.+-.|+. .|++|...+.-.- ..+++.+..+-+.-+...+. -...||
T Consensus 240 ----l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETF 313 (459)
T KOG4340|consen 240 ----LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETF 313 (459)
T ss_pred ----HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHH
Confidence 122334444567788999999999999885 4677766554322 23456666666666666533 345788
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHhHHHhCCCC-ChhHHHHHHHHhhc-CCChHHHHHHHHhCCCCCCHHHHHHHH-HHH-H
Q 002834 695 TAVLSACSHAGLVDEGLEIFRSIEKVQGIKP-TPEQYASLVDLLAR-GGQISDAYSLVNRMPVEADCNVWGTLL-GAC-R 770 (875)
Q Consensus 695 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~p~~~~~~~l~-~~~-~ 770 (875)
..++-.||+..-++.|-.++-+-.. ...+- +...| .+++++.. .-..++|.+=++.+....- .-...+. ..- .
T Consensus 314 ANlLllyCKNeyf~lAADvLAEn~~-lTyk~L~~Yly-~LLdaLIt~qT~pEea~KKL~~La~~l~-~kLRklAi~vQe~ 390 (459)
T KOG4340|consen 314 ANLLLLYCKNEYFDLAADVLAENAH-LTYKFLTPYLY-DLLDALITCQTAPEEAFKKLDGLAGMLT-EKLRKLAIQVQEA 390 (459)
T ss_pred HHHHHHHhhhHHHhHHHHHHhhCcc-hhHHHhhHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 8999999999888888887743311 01110 11222 23444433 4456666655544320000 0011111 111 1
Q ss_pred hcCC----hhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHH
Q 002834 771 IHHE----VELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMK 820 (875)
Q Consensus 771 ~~~~----~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 820 (875)
++.+ +..+++-+++.+++. -....+.+|+|....++.-+.+++..-.
T Consensus 391 r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sv 441 (459)
T KOG4340|consen 391 RHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSV 441 (459)
T ss_pred HhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHH
Confidence 2222 223445556666552 1245678899999999999999887643
No 104
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.58 E-value=5.8e-07 Score=79.63 Aligned_cols=106 Identities=9% Similarity=-0.028 Sum_probs=91.5
Q ss_pred HHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccc
Q 002834 712 EIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEME 789 (875)
Q Consensus 712 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 789 (875)
.++++..+ +.|+. +..++..+...|++++|...++... ..| +...|..+..++...|+++.|+..++++++++
T Consensus 14 ~~~~~al~---~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45555544 55653 5667889999999999999999875 555 66889999999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 002834 790 ADNIGNYVVMSNLYAADARWDGVVEIRKLMKTR 822 (875)
Q Consensus 790 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 822 (875)
|+++..+..+|.+|...|++++|++.+......
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999988876653
No 105
>PF12854 PPR_1: PPR repeat
Probab=98.58 E-value=5e-08 Score=60.62 Aligned_cols=34 Identities=32% Similarity=0.544 Sum_probs=29.0
Q ss_pred hCCCCCcchhhHHHHHhHhcCChhHHHHHhccCC
Q 002834 175 FGLERHTLVGNSLTSMYAKRGLVHDAYSVFDSIE 208 (875)
Q Consensus 175 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 208 (875)
+|+.||..+||+||++||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3778888888888888888888888888888884
No 106
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.57 E-value=9.5e-07 Score=76.17 Aligned_cols=95 Identities=13% Similarity=0.060 Sum_probs=85.3
Q ss_pred hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHH
Q 002834 727 PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYA 804 (875)
Q Consensus 727 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 804 (875)
.+....+...+...|++++|..+++-.- ..| +...|-.|...|+..|+++.|+.+|.+++.++|++|.++..+|.+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 4566677888899999999999999874 566 56889999999999999999999999999999999999999999999
Q ss_pred hcCCchhHHHHHHHHHh
Q 002834 805 ADARWDGVVEIRKLMKT 821 (875)
Q Consensus 805 ~~g~~~~A~~~~~~~~~ 821 (875)
..|+.++|.+.++....
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999998887654
No 107
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.57 E-value=0.0012 Score=67.76 Aligned_cols=452 Identities=10% Similarity=0.023 Sum_probs=252.4
Q ss_pred chhHhhhHHHHhHhcCChhHHHHHhhhcCC--C-CccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHH
Q 002834 285 DVSVCNALVSFYLRFGRTEEAELLFRRMKS--R-DLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLP 361 (875)
Q Consensus 285 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~ 361 (875)
|+..|+.||.-+-.. ..+++++.++++.. | ....|..-|.+-....+++.+..+|.+.+..- . +...|..-|.
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv-L--nlDLW~lYl~ 94 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV-L--NLDLWKLYLS 94 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-h--hHhHHHHHHH
Confidence 899999999988777 99999999999886 3 45678899999999999999999999988764 3 3444444443
Q ss_pred HHhc-cCChhh----HHHHHHH-HHhcCCCCchhhHHHHHHHHHh---------cCCChhHHHHHHHhcCC-C--C----
Q 002834 362 ACAY-LKNLKV----GKEIHGY-FLRHPYLEEDAAVGNALVSFYA---------KCSDMEAAYRTFLMICR-R--D---- 419 (875)
Q Consensus 362 ~~~~-~~~~~~----a~~~~~~-~~~~~~~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~~-~--~---- 419 (875)
--.+ .++... ..+.++. +.+.|+++....+|+..+..+- ...+++..++++.++.. | |
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL 174 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL 174 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 3222 122222 2233333 3456766666667777766543 33456667788877744 2 2
Q ss_pred ---cchHHHHHHHH-------hccCChhHHHHHHHHHHH--CCCCCChhhHHHHHHHhhccCchhh--HHHHHHHHHHh-
Q 002834 420 ---LISWNSMLDAF-------SESGYNSQFLNLLNCMLM--EGIRPDSITILTIIHFCTTVLREGM--VKETHGYLIKT- 484 (875)
Q Consensus 420 ---~~~~~~li~~~-------~~~g~~~~a~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~--a~~~~~~~~~~- 484 (875)
-..|..=|... -+...+..|.+++++... .|+.....++ -..+-.++ ..+++...++.
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~v-------p~~~T~~e~~qv~~W~n~I~wE 247 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAV-------PPKGTKDEIQQVELWKNWIKWE 247 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCC-------CCCCChHHHHHHHHHHHHHHHH
Confidence 12222222211 123345667777777653 3433332220 00111111 11222222221
Q ss_pred ---cCCCCCCch------hHHHHHHHHH-HhcCCHHHHHHHHHhhccCCCcccHHHHHHHhhcCCChHHHHHHHHhhhcC
Q 002834 485 ---GLLLGDTEH------NIGNAILDAY-AKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFMTFSRIYAR 554 (875)
Q Consensus 485 ---~~~~~~~~~------~~~~~li~~~-~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 554 (875)
++.....+. .+|...+..+ ..-.-+-++...+.+... ++......-......+++.++++.....
T Consensus 248 ksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~-----l~~~~~d~~~a~~~t~e~~~~yEr~I~~ 322 (656)
T KOG1914|consen 248 KSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISD-----LLTEKGDVPDAKSLTDEAASIYERAIEG 322 (656)
T ss_pred hcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhH-----HHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 110000000 0111111110 000111112222222111 0000000000001123333333333221
Q ss_pred ----CCccHHHHHHHHH---HcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCC--Cc
Q 002834 555 ----DLTPWNLMIRVYA---ENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFD--GV 625 (875)
Q Consensus 555 ----~~~~~~~l~~~~~---~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~--~~ 625 (875)
+...|..+...-- ..+..+.....+.++...-..--..+|...+....+..-+..|+.+|..+.+.+.. .+
T Consensus 323 l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhV 402 (656)
T KOG1914|consen 323 LLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHV 402 (656)
T ss_pred HHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchh
Confidence 1111222222111 11124555566666554322222356777777777777888888888888887665 77
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHhccCCC--CChh-hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--hhHHHHHHH
Q 002834 626 RLNGALLHLYAKCGSIFSASKIFQCHPQ--KDVV-MLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDH--VVITAVLSA 700 (875)
Q Consensus 626 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~a 700 (875)
.+.++++..|| .++.+.|.++|+-..+ +|.. --+..+.-+...++-..|..+|++....++.|+. ..|..+|.-
T Consensus 403 fVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~y 481 (656)
T KOG1914|consen 403 FVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEY 481 (656)
T ss_pred hHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHH
Confidence 88888888776 5788899999997665 4444 3455677777888999999999999988777764 579999998
Q ss_pred HhhcCcHHHHHHHHHHhHHHhC--CCCChhHHHHHHHHhhcCCChHHHHHHHHhC
Q 002834 701 CSHAGLVDEGLEIFRSIEKVQG--IKPTPEQYASLVDLLARGGQISDAYSLVNRM 753 (875)
Q Consensus 701 ~~~~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 753 (875)
-+.-|+...++++-+++...+. ..|...+-..+++.|.-.+.+..-..-++.+
T Consensus 482 ES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 482 ESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 8899999999999888876555 4555556666777777666655444444433
No 108
>PLN02789 farnesyltranstransferase
Probab=98.56 E-value=8.6e-06 Score=82.18 Aligned_cols=196 Identities=9% Similarity=-0.001 Sum_probs=134.9
Q ss_pred hHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcC-CHHHHHHHhccCCC---CChhhHHHHHHHHHHcCCh--HHHHHHHH
Q 002834 607 VHLLRQCHGYVIRACFDGVRLNGALLHLYAKCG-SIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMG--KAALKVFS 680 (875)
Q Consensus 607 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~--~~A~~~~~ 680 (875)
.+.|....+.++...+.+..+++.....+.+.| .+++++..++++.+ ++..+|+.....+.+.|+. ++++.+++
T Consensus 53 serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~ 132 (320)
T PLN02789 53 SPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTR 132 (320)
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHH
Confidence 344444555555555554455555555555556 56788888776654 4556777666666666653 67888888
Q ss_pred HHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcC---CCh----HHHHHHHHh
Q 002834 681 DMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARG---GQI----SDAYSLVNR 752 (875)
Q Consensus 681 ~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~---g~~----~~A~~~~~~ 752 (875)
++.+.. +-|...|....-++.+.|+++++++.++++.+ ..|+ ...|+....++.+. |.. ++++++..+
T Consensus 133 kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~---~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~ 208 (320)
T PLN02789 133 KILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLE---EDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTID 208 (320)
T ss_pred HHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHH---HCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHH
Confidence 888743 33566777777788888999999999999877 3343 44666666555444 222 467777755
Q ss_pred C-CCCC-CHHHHHHHHHHHHhc----CChhHHHHHHHHHhcccCCCCccHHHHHHHHHhc
Q 002834 753 M-PVEA-DCNVWGTLLGACRIH----HEVELGRVVANRLFEMEADNIGNYVVMSNLYAAD 806 (875)
Q Consensus 753 ~-~~~p-~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 806 (875)
+ ...| |..+|+.+.+.+... ++...|...+.+++..+|+.+.++..|+.+|...
T Consensus 209 aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 209 AILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 5 4566 568999999998774 3446688889999999999999999999999874
No 109
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.55 E-value=5.5e-05 Score=80.06 Aligned_cols=190 Identities=12% Similarity=0.000 Sum_probs=118.7
Q ss_pred HHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC-----CCh--hhHHHHHHHHHHcCC
Q 002834 599 PVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ-----KDV--VMLTAMIGGYAMHGM 671 (875)
Q Consensus 599 ~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~--~~~~~li~~~~~~g~ 671 (875)
..+...|+++.|...++...+..+.+...+..+...|...|++++|...+++... ++. ..|..+...+...|+
T Consensus 122 ~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~ 201 (355)
T cd05804 122 FGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGD 201 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCC
Confidence 4556677777777777777777766777778888899999999999999887664 122 245678888999999
Q ss_pred hHHHHHHHHHHHHCCCCCC-hhhH-H--HHHHHHhhcCcHHHHHHHHHHhHHHh-CCCCC---hhHHHHHHHHhhcCCCh
Q 002834 672 GKAALKVFSDMLELGVNPD-HVVI-T--AVLSACSHAGLVDEGLEIFRSIEKVQ-GIKPT---PEQYASLVDLLARGGQI 743 (875)
Q Consensus 672 ~~~A~~~~~~m~~~g~~p~-~~~~-~--~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~p~---~~~~~~l~~~~~~~g~~ 743 (875)
+++|+.++++.......+. .... + .++.-+...|..+.+.++ +.+.... ...|. .......+.++...|+.
T Consensus 202 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 280 (355)
T cd05804 202 YEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDK 280 (355)
T ss_pred HHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCH
Confidence 9999999999865322112 1111 1 223333344443333332 2121110 01011 11223566778889999
Q ss_pred HHHHHHHHhCC--CCC---CH----HHH--HHHHHHHHhcCChhHHHHHHHHHhccc
Q 002834 744 SDAYSLVNRMP--VEA---DC----NVW--GTLLGACRIHHEVELGRVVANRLFEME 789 (875)
Q Consensus 744 ~~A~~~~~~~~--~~p---~~----~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~ 789 (875)
++|..+++.+. ... .. .+. .....++...||.+.|.+.+..++.+-
T Consensus 281 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 281 DALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 99999998873 111 11 111 222244567899999999999888764
No 110
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.53 E-value=5.2e-06 Score=92.53 Aligned_cols=126 Identities=13% Similarity=0.070 Sum_probs=59.0
Q ss_pred ChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChh-HHHHHHHHhhcCCChHHHHHHHHhCC-CCCCH-HHHHHHH
Q 002834 690 DHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPE-QYASLVDLLARGGQISDAYSLVNRMP-VEADC-NVWGTLL 766 (875)
Q Consensus 690 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~ 766 (875)
+...+..|.....+.|..++|..+++.+.+ +.|+.. ....++.++.+.+++++|...+++.. ..|+. .....+.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 344444444444455555555555554433 444433 44444445555555555555554442 33433 2233333
Q ss_pred HHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHH
Q 002834 767 GACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKL 818 (875)
Q Consensus 767 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 818 (875)
.++...|+.++|..+|+++++.+|+++..++.+|.++...|+.++|...+++
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~ 213 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQA 213 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3334445555555555555554454455555555555555555555554333
No 111
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.50 E-value=7.6e-06 Score=84.14 Aligned_cols=214 Identities=15% Similarity=0.145 Sum_probs=159.8
Q ss_pred HHHhcCCHHHHHHHHHhhccC-C-CcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCcc---HHHHHHHHHHcCCchHHH
Q 002834 502 AYAKCRNIKYAFNVFQSLLEK-R-NLVTFNPVISGYANCGSADEAFMTFSRIYARDLTP---WNLMIRVYAENDFPNQAL 576 (875)
Q Consensus 502 ~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~ 576 (875)
-+.+.|++.+|.-.|+...++ | +...|.-|.......++-..|+..+.+..+.++.. ...|.-.|...|.-.+|+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 456889999999999977765 6 77899999999999999999999999998888777 666777889999999999
Q ss_pred HHHHHHHHCCCC-----C---CcchHhcHHHHhhcccchHHHHHHHHHHHHh-cCC-CchHHHHHHHHhHhcCCHHHHHH
Q 002834 577 SLFLKLQAQGMK-----P---DAVTIMSLLPVCSQMASVHLLRQCHGYVIRA-CFD-GVRLNGALLHLYAKCGSIFSASK 646 (875)
Q Consensus 577 ~~~~~m~~~g~~-----p---~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~ 646 (875)
..|+.=.....+ + +...-.. ....+...+....++|-.+... +.. ++.+...|.-+|--.|+++.|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 998886443210 0 1000000 1222333344555555544444 444 88899999999999999999999
Q ss_pred HhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh-hHHHHHHHHhhcCcHHHHHHHHHHhHH
Q 002834 647 IFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHV-VITAVLSACSHAGLVDEGLEIFRSIEK 719 (875)
Q Consensus 647 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~ 719 (875)
.|+.... .|...||-|...++...+.++|++.|++.++ ++|+-+ ....|.-+|...|.+++|.+.|-++..
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9997765 4667899999999988899999999999888 678754 334456678889999998888876654
No 112
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.47 E-value=4.7e-06 Score=82.99 Aligned_cols=157 Identities=15% Similarity=0.069 Sum_probs=96.4
Q ss_pred hhhHHHHhHhcCChhHHHHHhhhcCCCCccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCC
Q 002834 289 CNALVSFYLRFGRTEEAELLFRRMKSRDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKN 368 (875)
Q Consensus 289 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~ 368 (875)
.......+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.+ .|.. ...
T Consensus 105 ~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~---eD~~-l~q---------- 168 (290)
T PF04733_consen 105 QLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQID---EDSI-LTQ---------- 168 (290)
T ss_dssp HHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS---CCHH-HHH----------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcHH-HHH----------
Confidence 333445567788899888888765 455666677888899999999999999988754 4433 222
Q ss_pred hhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcCC---CCcchHHHHHHHHhccCChhHHHHHHHH
Q 002834 369 LKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICR---RDLISWNSMLDAFSESGYNSQFLNLLNC 445 (875)
Q Consensus 369 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~ 445 (875)
...+.+..+.-.+.+.+|..+|+++.. +++.+.|.+..++...|++++|.+++.+
T Consensus 169 ----------------------La~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~ 226 (290)
T PF04733_consen 169 ----------------------LAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEE 226 (290)
T ss_dssp ----------------------HHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred ----------------------HHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 233444444444567777777777643 3455666677777777888888777777
Q ss_pred HHHCCCCCChhhHHHHHHHhhccCch-hhHHHHHHHHHHh
Q 002834 446 MLMEGIRPDSITILTIIHFCTTVLRE-GMVKETHGYLIKT 484 (875)
Q Consensus 446 m~~~g~~p~~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~ 484 (875)
....+ +-+..++..++.++...|+. +.+.+++.++...
T Consensus 227 al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 227 ALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 65433 12334555555555555555 4455555555544
No 113
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.46 E-value=2.5e-05 Score=73.11 Aligned_cols=283 Identities=13% Similarity=0.083 Sum_probs=170.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccC-C-CcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCcc--HH-HHHHHHHHcC
Q 002834 496 GNAILDAYAKCRNIKYAFNVFQSLLEK-R-NLVTFNPVISGYANCGSADEAFMTFSRIYARDLTP--WN-LMIRVYAEND 570 (875)
Q Consensus 496 ~~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~-~l~~~~~~~~ 570 (875)
+.+.+..+.+..++.+|++++..-.++ | +....+.+..+|....++..|...++++...-+.- |. --...+.+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 456666677888999999998876664 4 55667778888888889999999998886655544 32 2345567788
Q ss_pred CchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhcc
Q 002834 571 FPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQC 650 (875)
Q Consensus 571 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 650 (875)
.+.+|+++...|.+. |+...-..-+. .| .....+++..+..+.++
T Consensus 93 i~ADALrV~~~~~D~---~~L~~~~lqLq---------aA-----------------------IkYse~Dl~g~rsLveQ 137 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN---PALHSRVLQLQ---------AA-----------------------IKYSEGDLPGSRSLVEQ 137 (459)
T ss_pred ccHHHHHHHHHhcCC---HHHHHHHHHHH---------HH-----------------------HhcccccCcchHHHHHh
Confidence 888999888887643 22111100010 00 11224455555555555
Q ss_pred CCC-CChhhHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCC---
Q 002834 651 HPQ-KDVVMLTAMIGGYAMHGMGKAALKVFSDMLEL-GVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKP--- 725 (875)
Q Consensus 651 ~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--- 725 (875)
.+. .+..+.+.......+.|+++.|++-|+...+- |+.| ...|+..+ +..+.|+.+.|+++..++.+ .|++.
T Consensus 138 lp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iSEIie-RG~r~HPE 214 (459)
T KOG4340|consen 138 LPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHISEIIE-RGIRQHPE 214 (459)
T ss_pred ccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHHH-hhhhcCCc
Confidence 552 44444444444445666666666666665553 3333 33444322 33445566666666666554 23221
Q ss_pred ----------C--------hhHHHHH-------HHHhhcCCChHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCChh
Q 002834 726 ----------T--------PEQYASL-------VDLLARGGQISDAYSLVNRMP----VEADCNVWGTLLGACRIHHEVE 776 (875)
Q Consensus 726 ----------~--------~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~l~~~~~~~~~~~ 776 (875)
| .-+-+.+ .-.+.+.|+++.|.+.+..|| .+.|+++..++.-. -..+++.
T Consensus 215 lgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~ 293 (459)
T KOG4340|consen 215 LGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPT 293 (459)
T ss_pred cCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCcc
Confidence 1 1122233 334567788888888888886 34567776665432 2345566
Q ss_pred HHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHH
Q 002834 777 LGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRK 817 (875)
Q Consensus 777 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 817 (875)
.+.+-+.=+++++|-.+.++..+--+|.++.-++-|..++.
T Consensus 294 ~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 294 EGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred ccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 66666677788888666777777777888887887777664
No 114
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.46 E-value=1.3e-05 Score=90.35 Aligned_cols=208 Identities=16% Similarity=0.111 Sum_probs=166.8
Q ss_pred HHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC--------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 002834 614 HGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ--------KDVVMLTAMIGGYAMHGMGKAALKVFSDMLEL 685 (875)
Q Consensus 614 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 685 (875)
|....+..|.+...|-..+......+++++|++++++... .-.-.|.++++.....|.-+...++|+++.+.
T Consensus 1447 ferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy 1526 (1710)
T KOG1070|consen 1447 FERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY 1526 (1710)
T ss_pred HHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh
Confidence 4555666666777888888888889999999999987664 12247888888888888888889999999883
Q ss_pred CCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCC---HHH
Q 002834 686 GVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP-VEAD---CNV 761 (875)
Q Consensus 686 g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~---~~~ 761 (875)
--.-..|..|...|.+.++.++|.++++.|.+.++ .....|...++.+.++..-++|..+++++. .-|. ...
T Consensus 1527 --cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~ 1602 (1710)
T KOG1070|consen 1527 --CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEF 1602 (1710)
T ss_pred --cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHH
Confidence 22345578888899999999999999999998776 556788889999999999999999988763 4443 244
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhCCCc
Q 002834 762 WGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTRDLK 825 (875)
Q Consensus 762 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 825 (875)
..-.+..-.++||.++++.+++-++.-.|+--..|..++..-.+.|..+.+..++++....++.
T Consensus 1603 IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred HHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 4555566678999999999999999999999999999999999999999999999888776543
No 115
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.44 E-value=0.00038 Score=84.06 Aligned_cols=25 Identities=12% Similarity=0.092 Sum_probs=15.5
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHH
Q 002834 560 NLMIRVYAENDFPNQALSLFLKLQA 584 (875)
Q Consensus 560 ~~l~~~~~~~~~~~~A~~~~~~m~~ 584 (875)
+.+...+...|++++|...+.+...
T Consensus 495 ~~lg~~~~~~G~~~~A~~~~~~al~ 519 (903)
T PRK04841 495 SVLGEVHHCKGELARALAMMQQTEQ 519 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344455667777777777766543
No 116
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.43 E-value=4.7e-05 Score=77.16 Aligned_cols=144 Identities=17% Similarity=0.179 Sum_probs=98.1
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHH-HHhhcCcHHHHHHHHHHhHHHhCCCCCh-hHHHHHH
Q 002834 657 VMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLS-ACSHAGLVDEGLEIFRSIEKVQGIKPTP-EQYASLV 734 (875)
Q Consensus 657 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~ 734 (875)
..+......+...|+.++|+..++.++.. .||...|..+.. .+...++.++|.+.++++.. ..|+. ...-.+.
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a 381 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLA 381 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHH
Confidence 34444444555677777888888777763 566555555544 67777788888887777765 56663 3556667
Q ss_pred HHhhcCCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhH
Q 002834 735 DLLARGGQISDAYSLVNRMP--VEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGV 812 (875)
Q Consensus 735 ~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 812 (875)
++|.+.|+..+|+..++... .+.|+..|..|..+|...|+..++..+ .+..|+-.|+|++|
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A 444 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQA 444 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHH
Confidence 77777888888777777764 333667777777888777777666443 34567778888888
Q ss_pred HHHHHHHHhC
Q 002834 813 VEIRKLMKTR 822 (875)
Q Consensus 813 ~~~~~~~~~~ 822 (875)
+...+..+++
T Consensus 445 ~~~l~~A~~~ 454 (484)
T COG4783 445 IIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHh
Confidence 8877777654
No 117
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.38 E-value=1.8e-05 Score=74.28 Aligned_cols=154 Identities=12% Similarity=0.155 Sum_probs=116.1
Q ss_pred HHHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHH
Q 002834 632 LHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGL 711 (875)
Q Consensus 632 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~ 711 (875)
+..|.+.|+++......+....+. ..+...++.++++..+++..+.+ +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456777777766544443322111 01223566788888888888752 556677888888999999999999
Q ss_pred HHHHHhHHHhCCCCC-hhHHHHHHHHh-hcCCC--hHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 002834 712 EIFRSIEKVQGIKPT-PEQYASLVDLL-ARGGQ--ISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRL 785 (875)
Q Consensus 712 ~~~~~~~~~~~~~p~-~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 785 (875)
..|++..+ +.|+ ...+..++.++ .+.|+ .++|.+++++.. ..| +..++..+...+...|+++.|+..++++
T Consensus 94 ~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999977 5665 55888888865 67777 599999999985 566 5578888888899999999999999999
Q ss_pred hcccCCCCccHH
Q 002834 786 FEMEADNIGNYV 797 (875)
Q Consensus 786 ~~~~p~~~~~~~ 797 (875)
++++|.+..-+.
T Consensus 171 L~l~~~~~~r~~ 182 (198)
T PRK10370 171 LDLNSPRVNRTQ 182 (198)
T ss_pred HhhCCCCccHHH
Confidence 999998876543
No 118
>PF12854 PPR_1: PPR repeat
Probab=98.37 E-value=5.3e-07 Score=56.00 Aligned_cols=32 Identities=34% Similarity=0.669 Sum_probs=18.5
Q ss_pred CCCCChhhHHHHHHHHhhcCcHHHHHHHHHHh
Q 002834 686 GVNPDHVVITAVLSACSHAGLVDEGLEIFRSI 717 (875)
Q Consensus 686 g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 717 (875)
|+.||..||+.++.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555555
No 119
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.36 E-value=2.7e-05 Score=72.43 Aligned_cols=151 Identities=11% Similarity=0.088 Sum_probs=76.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCC
Q 002834 662 MIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGG 741 (875)
Q Consensus 662 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 741 (875)
+-..+...|+-+....+..+.... .+-|.......+....+.|++.+|...|++... .-++|...|+.++-+|.+.|
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHcc
Confidence 334444455555555444443321 122222233344455555555555555555544 22333445555555555555
Q ss_pred ChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHH
Q 002834 742 QISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEI 815 (875)
Q Consensus 742 ~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 815 (875)
++++|..-|.+.. +.| ++.+.+++...+...||.+.|+..+.++....|.++.+-..|+-+...+|++++|.++
T Consensus 149 r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 149 RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 5555555554442 333 3345555555555555555555555555555555555555555555555555555554
No 120
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.36 E-value=3.6e-05 Score=81.52 Aligned_cols=186 Identities=15% Similarity=0.086 Sum_probs=126.9
Q ss_pred HHHHHHHHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhh---
Q 002834 627 LNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSH--- 703 (875)
Q Consensus 627 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~--- 703 (875)
....+...+.++|-...|..+|+++. .|...|.+|+..|+..+|.++..+-.+ -+||..-|..+......
T Consensus 400 ~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHH
Confidence 33445555555555555555555432 345555555555555555555555544 24444444444433333
Q ss_pred -------------------------cCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CC
Q 002834 704 -------------------------AGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VE 756 (875)
Q Consensus 704 -------------------------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~ 756 (875)
.++++++.+.|+.-.+ +.|- ..+|..++.+..+.++++.|.+.|.... ..
T Consensus 473 yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~---~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~ 549 (777)
T KOG1128|consen 473 YEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLE---INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE 549 (777)
T ss_pred HHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhh---cCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC
Confidence 4556666666655433 3333 3477777888888899999888887764 77
Q ss_pred CCH-HHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 002834 757 ADC-NVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTR 822 (875)
Q Consensus 757 p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 822 (875)
||. ..|+++..++.+.|+-.+|...++++++-+-++...+....-+-..-|.|++|.+....+.+.
T Consensus 550 Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 550 PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 865 889999999999999999999999999998888888888888888899999999988887653
No 121
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.31 E-value=5.1e-06 Score=73.48 Aligned_cols=99 Identities=16% Similarity=0.203 Sum_probs=75.4
Q ss_pred CCCCh-hHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHH
Q 002834 723 IKPTP-EQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVM 799 (875)
Q Consensus 723 ~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 799 (875)
..|+. .....++..+...|++++|.+.++... ..| ++..|..+...+...|+++.|...++++++.+|+++..+..+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 44543 356667777777888888888777763 334 557777777777788888888888888888888888888888
Q ss_pred HHHHHhcCCchhHHHHHHHHHh
Q 002834 800 SNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 800 ~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
+.+|...|++++|.+.++...+
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888888888888776554
No 122
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.31 E-value=5.8e-05 Score=76.51 Aligned_cols=121 Identities=13% Similarity=0.101 Sum_probs=104.8
Q ss_pred HHHHHhhcCcHHHHHHHHHHhHHHhCCCCChh-HHHHHHHHhhcCCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcC
Q 002834 697 VLSACSHAGLVDEGLEIFRSIEKVQGIKPTPE-QYASLVDLLARGGQISDAYSLVNRMP-VEAD-CNVWGTLLGACRIHH 773 (875)
Q Consensus 697 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~ 773 (875)
........|+.++|+..++.+.. ..|+.. .+...++.+.+.|+.++|.+.++++. ..|+ ...+.++..++.+.|
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~---~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g 388 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIA---AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGG 388 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcC
Confidence 33456678999999999999876 456544 66677899999999999999999985 6776 578889999999999
Q ss_pred ChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHH
Q 002834 774 EVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMK 820 (875)
Q Consensus 774 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 820 (875)
+..+|++.++..+..+|+||..|..|+..|...|+..+|...+...-
T Consensus 389 ~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 389 KPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred ChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999766553
No 123
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.30 E-value=2.9e-05 Score=82.13 Aligned_cols=234 Identities=13% Similarity=0.078 Sum_probs=171.0
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCcc--HHHHHHHHH
Q 002834 490 DTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFMTFSRIYARDLTP--WNLMIRVYA 567 (875)
Q Consensus 490 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~l~~~~~ 567 (875)
+|-...-..+...+...|-..+|..+|+++. .|.-++.+|+..|+..+|..+..+..+.++.+ |..+.+...
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLH 468 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhcc
Confidence 5555566778889999999999999998754 56778889999999999998888776655554 888888888
Q ss_pred HcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHH
Q 002834 568 ENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKI 647 (875)
Q Consensus 568 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 647 (875)
...-+++|.++.+..... .-..+-....+.++++++...++...+.++-...+|-.+..++.++++.+.|.+.
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHH
Confidence 778888999888875432 0011111122356777787777777777777777788888888888888888888
Q ss_pred hccCCC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCC
Q 002834 648 FQCHPQ--K-DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIK 724 (875)
Q Consensus 648 ~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 724 (875)
|..... | +..+||++-.+|.+.|+-.+|...+.+..+.+ .-+...|...+....+.|.+++|.+.++++.......
T Consensus 542 F~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~ 620 (777)
T KOG1128|consen 542 FHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKY 620 (777)
T ss_pred HHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhc
Confidence 886553 4 45688888888888888888888888888876 4445556666666778888888888888887654333
Q ss_pred CChhHHHHHHHHh
Q 002834 725 PTPEQYASLVDLL 737 (875)
Q Consensus 725 p~~~~~~~l~~~~ 737 (875)
-|..+...++...
T Consensus 621 ~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 621 KDDEVLLIIVRTV 633 (777)
T ss_pred ccchhhHHHHHHH
Confidence 4555554444433
No 124
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.30 E-value=9.7e-05 Score=83.73 Aligned_cols=218 Identities=12% Similarity=0.083 Sum_probs=171.5
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC--C-----CcccHHHHHHHhhcCCChHHHHHHHHhhhcC-CCcc-HH
Q 002834 490 DTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEK--R-----NLVTFNPVISGYANCGSADEAFMTFSRIYAR-DLTP-WN 560 (875)
Q Consensus 490 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--p-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~-~~ 560 (875)
|.+...+-..|......+++++|++++++.... + -...|.++++.-...|.-+...++|+++.+- ++.+ |.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 445556777788888889999999999988763 1 2346777777777778888888999988765 3333 99
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCC--CchHHHHHHHHhHhc
Q 002834 561 LMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFD--GVRLNGALLHLYAKC 638 (875)
Q Consensus 561 ~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~ 638 (875)
.|...|.+.+..++|.++|+.|.+. ..-....|...+....+...-+.+..++..+.+.-+. ...+..-.+.+-.++
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 9999999999999999999999875 3455667888888888888888999999988888776 788888888999999
Q ss_pred CCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHhhcCcHH
Q 002834 639 GSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDH--VVITAVLSACSHAGLVD 708 (875)
Q Consensus 639 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~a~~~~g~~~ 708 (875)
|+.+.++.+|+.... +....|+..|..-.++|+.+.+..+|++.+..++.|-. ..|.--|.---..|+-+
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 999999999998765 35678999999999999999999999999998887764 23444444333344433
No 125
>PLN02789 farnesyltranstransferase
Probab=98.29 E-value=5.5e-05 Score=76.41 Aligned_cols=184 Identities=10% Similarity=0.004 Sum_probs=137.1
Q ss_pred HHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCc--
Q 002834 633 HLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHG-MGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGL-- 706 (875)
Q Consensus 633 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~-- 706 (875)
..+.+.++.++|+...+++.+ .+..+|+....++...| +.++++..++++.+.+ +-+..+|+.....+.+.|+
T Consensus 45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchh
Confidence 345567788899998887765 34467877777777777 6799999999999853 3334456655445555665
Q ss_pred HHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhc---CC----hh
Q 002834 707 VDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIH---HE----VE 776 (875)
Q Consensus 707 ~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~---~~----~~ 776 (875)
.++++.+++++.+ ..|. ...|.....++.+.|++++|++.++++. ..| |..+|+.....+... |. .+
T Consensus 124 ~~~el~~~~kal~---~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 124 ANKELEFTRKILS---LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred hHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHH
Confidence 3678889988876 5565 4488888899999999999999999985 444 668898887766554 22 24
Q ss_pred HHHHHHHHHhcccCCCCccHHHHHHHHHhc----CCchhHHHHHHHHH
Q 002834 777 LGRVVANRLFEMEADNIGNYVVMSNLYAAD----ARWDGVVEIRKLMK 820 (875)
Q Consensus 777 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~ 820 (875)
.+....+++++++|+|..+|..++.+|... ++..+|.+......
T Consensus 201 ~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~ 248 (320)
T PLN02789 201 SELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL 248 (320)
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhh
Confidence 677888899999999999999999999883 45566777655543
No 126
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.27 E-value=3.8e-05 Score=71.43 Aligned_cols=134 Identities=14% Similarity=0.142 Sum_probs=111.1
Q ss_pred CCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC--CCCCHHHHHHH
Q 002834 688 NPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP--VEADCNVWGTL 765 (875)
Q Consensus 688 ~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l 765 (875)
.|+......+-.++...|+-+.+..+...... ...-|.......+....+.|++.+|...+.+.. .++|...|+-+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 55433335556688888999998888877644 223344456668899999999999999999984 56678999999
Q ss_pred HHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 002834 766 LGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTRD 823 (875)
Q Consensus 766 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 823 (875)
..+|-+.|+++.|...|.+++++.|.++.++..|+..|.-.|+.+.|..++......+
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999887776543
No 127
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.27 E-value=3.3e-05 Score=76.04 Aligned_cols=163 Identities=14% Similarity=0.045 Sum_probs=111.5
Q ss_pred CchHHHHHHHHhHhcCCHHHHHHHhccCCC--CC-h---hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh----h
Q 002834 624 GVRLNGALLHLYAKCGSIFSASKIFQCHPQ--KD-V---VMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHV----V 693 (875)
Q Consensus 624 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~ 693 (875)
.......++..+.+.|++++|...|+++.. |+ . .+|..+..++...|++++|+..++++.+. .|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 344445566667777777777777776554 22 1 35666777778888888888888888764 33322 3
Q ss_pred HHHHHHHHhhc--------CcHHHHHHHHHHhHHHhCCCCChh-H-----------------HHHHHHHhhcCCChHHHH
Q 002834 694 ITAVLSACSHA--------GLVDEGLEIFRSIEKVQGIKPTPE-Q-----------------YASLVDLLARGGQISDAY 747 (875)
Q Consensus 694 ~~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~p~~~-~-----------------~~~l~~~~~~~g~~~~A~ 747 (875)
+..+..++... |+.++|.+.|+++.+. .|+.. . ...+...+.+.|++++|.
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~ 186 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAI 186 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHH
Confidence 33344444443 6778888888887663 34321 1 124667788999999999
Q ss_pred HHHHhCC----CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCC
Q 002834 748 SLVNRMP----VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEAD 791 (875)
Q Consensus 748 ~~~~~~~----~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 791 (875)
..+++.. ..| ....|..+..++...|+.+.|...++.+....|+
T Consensus 187 ~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 187 NRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 9988873 233 3478889999999999999999998888766553
No 128
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.23 E-value=0.00016 Score=81.49 Aligned_cols=147 Identities=8% Similarity=0.057 Sum_probs=75.6
Q ss_pred HHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhh
Q 002834 627 LNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSH 703 (875)
Q Consensus 627 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~ 703 (875)
++..++.+|-+.|+.++|..++++..+ .|+.+.|.+...|+.. +.++|++++.+.... +..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~ 181 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIK 181 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHh
Confidence 445555666666666666666665544 3445555566666555 666666666555432 334
Q ss_pred cCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 002834 704 AGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVA 782 (875)
Q Consensus 704 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 782 (875)
.+++..+.++|.++.. ..|+ ...+..+.+.....-.. .--..++.-+-..|...++++.+..++
T Consensus 182 ~kq~~~~~e~W~k~~~---~~~~d~d~f~~i~~ki~~~~~~------------~~~~~~~~~l~~~y~~~~~~~~~i~iL 246 (906)
T PRK14720 182 KKQYVGIEEIWSKLVH---YNSDDFDFFLRIERKVLGHREF------------TRLVGLLEDLYEPYKALEDWDEVIYIL 246 (906)
T ss_pred hhcchHHHHHHHHHHh---cCcccchHHHHHHHHHHhhhcc------------chhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 4455555555555544 2222 12222222221111001 111223333444455566677777777
Q ss_pred HHHhcccCCCCccHHHHHHHHH
Q 002834 783 NRLFEMEADNIGNYVVMSNLYA 804 (875)
Q Consensus 783 ~~~~~~~p~~~~~~~~l~~~~~ 804 (875)
+.+++.+|.|-.+..-++..|.
T Consensus 247 K~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 247 KKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhcCCcchhhHHHHHHHHH
Confidence 7777777776666666666655
No 129
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=0.00074 Score=62.92 Aligned_cols=159 Identities=14% Similarity=0.077 Sum_probs=106.1
Q ss_pred HHHHHHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhh----c
Q 002834 629 GALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSH----A 704 (875)
Q Consensus 629 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~----~ 704 (875)
..-...|.+.|++++|++.......-+..+.| +..+.+..+.+-|...+++|.+ --+..|.+-|..++.+ .
T Consensus 112 l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~---ided~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 112 LLAAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQ---IDEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHc---cchHHHHHHHHHHHHHHhccc
Confidence 34445677888888888888875433333333 3445667778888888888876 2345566656555543 4
Q ss_pred CcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC-ChhHHHHH
Q 002834 705 GLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP--VEADCNVWGTLLGACRIHH-EVELGRVV 781 (875)
Q Consensus 705 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~-~~~~a~~~ 781 (875)
+++.+|.-+|++|.+ ...|+..+.+.+..++...|+++||..+++... ...++.+..+++-.....| +.+.-.+.
T Consensus 187 ek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred hhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 567788888888866 367777778888888888888888888887774 3335566666654444443 55666677
Q ss_pred HHHHhcccCCCCc
Q 002834 782 ANRLFEMEADNIG 794 (875)
Q Consensus 782 ~~~~~~~~p~~~~ 794 (875)
..++....|+.+-
T Consensus 265 l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 265 LSQLKLSHPEHPF 277 (299)
T ss_pred HHHHHhcCCcchH
Confidence 7777777777653
No 130
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.14 E-value=0.024 Score=62.46 Aligned_cols=156 Identities=12% Similarity=0.111 Sum_probs=86.7
Q ss_pred cHHHHHHHhhcCCChH---HHHHHHHhhhcCCCcc---HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHH
Q 002834 527 TFNPVISGYANCGSAD---EAFMTFSRIYARDLTP---WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPV 600 (875)
Q Consensus 527 ~~~~l~~~~~~~~~~~---~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a 600 (875)
+-+.|+..|.+.++.. +|+-+++.....++.. --.+++.|+--|-+..|.++|+.+.-+.++-|...|..+ +-
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~-~~ 516 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIF-RR 516 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHH-HH
Confidence 3456778888888765 4555556555444444 566888898889999999999999888888887666433 34
Q ss_pred hhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhc---cCCC----CChhhHHHHHHHHHHcCChH
Q 002834 601 CSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQ---CHPQ----KDVVMLTAMIGGYAMHGMGK 673 (875)
Q Consensus 601 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~---~~~~----~~~~~~~~li~~~~~~g~~~ 673 (875)
+...|++..+...+....+.--.+..-..-+|..-.+.|.+++-.+... ++.. .-..+-+..++.++..++++
T Consensus 517 ~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~ 596 (932)
T KOG2053|consen 517 AETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGT 596 (932)
T ss_pred HHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHH
Confidence 4455666666665555444322211111122222233444443333221 1111 01122334445555556666
Q ss_pred HHHHHHHHHH
Q 002834 674 AALKVFSDML 683 (875)
Q Consensus 674 ~A~~~~~~m~ 683 (875)
+-...+..|.
T Consensus 597 q~~~~~~~~~ 606 (932)
T KOG2053|consen 597 QLLKLLESMK 606 (932)
T ss_pred HHHHHHhccc
Confidence 6666655554
No 131
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.14 E-value=2.7e-05 Score=80.09 Aligned_cols=121 Identities=13% Similarity=0.157 Sum_probs=94.7
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhc
Q 002834 695 TAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIH 772 (875)
Q Consensus 695 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~ 772 (875)
..++..+...++++.|.++|+++.+ ..|+ ....++.++...++..+|.+++++.. ..| +...+......|...
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~---~~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRE---RDPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHh---cCCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 4455556667778888888888766 2344 34456777777777788888877764 333 556677677778889
Q ss_pred CChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHH
Q 002834 773 HEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMK 820 (875)
Q Consensus 773 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 820 (875)
++.+.|..+++++.++.|++...|..|+.+|...|+|++|+-..+.+-
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999998887664
No 132
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.13 E-value=0.00013 Score=81.57 Aligned_cols=136 Identities=10% Similarity=0.029 Sum_probs=103.6
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhh-HHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChh-HHHH
Q 002834 655 DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVV-ITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPE-QYAS 732 (875)
Q Consensus 655 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~ 732 (875)
++..+-.|.....+.|+.++|+.+++...+ +.||... +..+..++.+.+++++|+..+++..+ ..|+.. +...
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHH
Confidence 466777778888888888888888888887 5676544 55566688888888888888888765 566644 7777
Q ss_pred HHHHhhcCCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCcc
Q 002834 733 LVDLLARGGQISDAYSLVNRMP-VEAD-CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGN 795 (875)
Q Consensus 733 l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 795 (875)
+..++.+.|++++|.++|++.. ..|+ +.+|.++..++.+.|+.+.|..+|+++++........
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 8888888888888888888875 3443 5778888888888888888888888888876554443
No 133
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.13 E-value=0.011 Score=61.14 Aligned_cols=159 Identities=17% Similarity=0.142 Sum_probs=98.3
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHH
Q 002834 657 VMLTAMIGGYAMHGMGKAALKVFSDMLELGVNP-DHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVD 735 (875)
Q Consensus 657 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 735 (875)
.+|-.+++.-.+..-.+.|..+|.+..+.+..+ +.....+++.-+ -.++.+-|.++|+.-.+.+|-.| ..-...++
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~-cskD~~~AfrIFeLGLkkf~d~p--~yv~~Yld 443 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY-CSKDKETAFRIFELGLKKFGDSP--EYVLKYLD 443 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH-hcCChhHHHHHHHHHHHhcCCCh--HHHHHHHH
Confidence 356666766666667777888888888777666 444455555533 34577788888877666444433 33445566
Q ss_pred HhhcCCChHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhcccC--CCCc--cHHHHHHHHHhc
Q 002834 736 LLARGGQISDAYSLVNRMP---VEAD--CNVWGTLLGACRIHHEVELGRVVANRLFEMEA--DNIG--NYVVMSNLYAAD 806 (875)
Q Consensus 736 ~~~~~g~~~~A~~~~~~~~---~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p--~~~~--~~~~l~~~~~~~ 806 (875)
-+.+-++-..|..+|++.. ..|+ ..+|..++..-..-||+....++-++-....| ..+. .-.++..-|.-.
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~ 523 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGIL 523 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhc
Confidence 6777777777777777763 2333 26788888777777888877777777666666 2211 122334445555
Q ss_pred CCchhHHHHHHH
Q 002834 807 ARWDGVVEIRKL 818 (875)
Q Consensus 807 g~~~~A~~~~~~ 818 (875)
+.+..-..-++.
T Consensus 524 d~~~c~~~elk~ 535 (656)
T KOG1914|consen 524 DLYPCSLDELKF 535 (656)
T ss_pred ccccccHHHHHh
Confidence 555444443333
No 134
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.11 E-value=6.2e-05 Score=77.49 Aligned_cols=129 Identities=14% Similarity=0.154 Sum_probs=107.8
Q ss_pred CchHHHHHHHHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhh
Q 002834 624 GVRLNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSH 703 (875)
Q Consensus 624 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~ 703 (875)
+..+..+|+..+...++++.|..+|+++.+.++..+..++..+...++-.+|++++++..+. .+-+...+..-...|.+
T Consensus 168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLS 246 (395)
T ss_pred chHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHh
Confidence 34455677778888899999999999999877777777889999999999999999999975 23345555555557889
Q ss_pred cCcHHHHHHHHHHhHHHhCCCCChh-HHHHHHHHhhcCCChHHHHHHHHhCCCC
Q 002834 704 AGLVDEGLEIFRSIEKVQGIKPTPE-QYASLVDLLARGGQISDAYSLVNRMPVE 756 (875)
Q Consensus 704 ~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 756 (875)
.++.+.|+++.+++.+ ..|+.. +|..|+.+|...|++++|+..++.+|.-
T Consensus 247 k~~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 247 KKKYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred cCCHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 9999999999999977 677755 9999999999999999999999999843
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=0.00045 Score=63.77 Aligned_cols=161 Identities=14% Similarity=0.117 Sum_probs=113.3
Q ss_pred HhHhcCCHHHHHHHhccCCC--CChh-hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHH
Q 002834 634 LYAKCGSIFSASKIFQCHPQ--KDVV-MLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEG 710 (875)
Q Consensus 634 ~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a 710 (875)
+...+|+.+.|...++.+.. |... .-..-.--+-..|++++|+++++...+.+ +.|.+++..=+...-..|+.-+|
T Consensus 61 AAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~a 139 (289)
T KOG3060|consen 61 AALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEA 139 (289)
T ss_pred HHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHH
Confidence 33445566666665555433 2111 11111123456789999999999998875 55667777666667777888888
Q ss_pred HHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcC---ChhHHHHHHHHH
Q 002834 711 LEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHH---EVELGRVVANRL 785 (875)
Q Consensus 711 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~---~~~~a~~~~~~~ 785 (875)
++-+..-.+. +.-|.+.|.-+.+.|...|++++|.-.++++. ..| ++..+..|...+...| |.+.+.+.|.++
T Consensus 140 Ik~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~a 217 (289)
T KOG3060|consen 140 IKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERA 217 (289)
T ss_pred HHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 8888777763 56678889999999999999999999999985 555 5566667776666554 788899999999
Q ss_pred hcccCCCCccHH
Q 002834 786 FEMEADNIGNYV 797 (875)
Q Consensus 786 ~~~~p~~~~~~~ 797 (875)
+++.|.+...+.
T Consensus 218 lkl~~~~~ral~ 229 (289)
T KOG3060|consen 218 LKLNPKNLRALF 229 (289)
T ss_pred HHhChHhHHHHH
Confidence 999986655444
No 136
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.05 E-value=7.3e-05 Score=66.04 Aligned_cols=114 Identities=15% Similarity=0.139 Sum_probs=87.6
Q ss_pred HHHHHHHCCCCCCh-hhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCC-ChhHHHHHHHHhhcCCChHHHHHHHHhCC-
Q 002834 678 VFSDMLELGVNPDH-VVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKP-TPEQYASLVDLLARGGQISDAYSLVNRMP- 754 (875)
Q Consensus 678 ~~~~m~~~g~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 754 (875)
++++... ..|+. .....+...+...|++++|.+.|+.+.. ..| +...+..++.++.+.|++++|...+++..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA---YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555 35543 3455566678888999999999988866 334 45678888899999999999999888873
Q ss_pred CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccH
Q 002834 755 VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNY 796 (875)
Q Consensus 755 ~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 796 (875)
..| +...+..+...+...|+.+.|...++++++++|++....
T Consensus 80 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 80 LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 444 567788888888889999999999999999999887643
No 137
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.05 E-value=2.8e-05 Score=73.70 Aligned_cols=102 Identities=14% Similarity=0.122 Sum_probs=67.0
Q ss_pred HhhcCcHHHHHHHHHHhHHHhCCCCChh-HHHHHHHHhhcCCChHHHHHHHHhCC-CCCCH-HHHHHHHHHHHhcCChhH
Q 002834 701 CSHAGLVDEGLEIFRSIEKVQGIKPTPE-QYASLVDLLARGGQISDAYSLVNRMP-VEADC-NVWGTLLGACRIHHEVEL 777 (875)
Q Consensus 701 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~~~~~~~~~~ 777 (875)
..+.+++.+|+..|.++.+ +.|+.. .|..-.-+|.+.|.++.|++-.+... ++|.. .+|..|..++...|+++.
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 4556677777777777765 555433 45555667777777777776666653 55543 667777777777777777
Q ss_pred HHHHHHHHhcccCCCCccHHHHHHHHHh
Q 002834 778 GRVVANRLFEMEADNIGNYVVMSNLYAA 805 (875)
Q Consensus 778 a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 805 (875)
|+++|+++++++|++....-.|.++-.+
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~Ae~~ 195 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIAEQK 195 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHHH
Confidence 7777777777777777555555444333
No 138
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.04 E-value=0.00061 Score=77.02 Aligned_cols=170 Identities=12% Similarity=0.062 Sum_probs=104.7
Q ss_pred cCCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcCC--C-CcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhH
Q 002834 382 HPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICR--R-DLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITI 458 (875)
Q Consensus 382 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 458 (875)
.+..++....+..|+..|...+++++|.++.+.... | ....|-.+...+.+.++.+++..+ .+.
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l----------- 90 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLI----------- 90 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhh-----------
Confidence 344566665788888888888888888888876533 3 333444444466666766665555 222
Q ss_pred HHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-C-CcccHHHHHHHhh
Q 002834 459 LTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEK-R-NLVTFNPVISGYA 536 (875)
Q Consensus 459 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~l~~~~~ 536 (875)
.......++..+..+...+.+. ..+...+..+..+|-+.|+.++|..+++++.+- | |+.+.|.+.-.|.
T Consensus 91 ----~~~~~~~~~~~ve~~~~~i~~~-----~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~a 161 (906)
T PRK14720 91 ----DSFSQNLKWAIVEHICDKILLY-----GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYE 161 (906)
T ss_pred ----hhcccccchhHHHHHHHHHHhh-----hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 2222333333333344444443 223335567777788888888888888877763 3 6667777777776
Q ss_pred cCCChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCchHHHHHHHHHHHC
Q 002834 537 NCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQAQ 585 (875)
Q Consensus 537 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 585 (875)
.. ++++|.+++.++... |...+++.++.++|.++...
T Consensus 162 e~-dL~KA~~m~~KAV~~-----------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 162 EE-DKEKAITYLKKAIYR-----------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred Hh-hHHHHHHHHHHHHHH-----------HHhhhcchHHHHHHHHHHhc
Confidence 66 777777776654332 45566777777777777654
No 139
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.03 E-value=0.004 Score=75.27 Aligned_cols=323 Identities=11% Similarity=-0.027 Sum_probs=211.8
Q ss_pred HHHHhcCCHHHHHHHHHhhccC---CCcccHHHHHHHhhcCCChHHHHHHHHhhhcC----C---C-cc----HHHHHHH
Q 002834 501 DAYAKCRNIKYAFNVFQSLLEK---RNLVTFNPVISGYANCGSADEAFMTFSRIYAR----D---L-TP----WNLMIRV 565 (875)
Q Consensus 501 ~~~~~~g~~~~A~~~~~~~~~~---p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~---~-~~----~~~l~~~ 565 (875)
......|+++.+...++.+... .+..........+...++++++...+...... + . .. ...+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 3445678888888888776431 12333333444556789999999888776321 1 1 11 2334456
Q ss_pred HHHcCCchHHHHHHHHHHHCCCCCCc----chHhcHHHHhhcccchHHHHHHHHHHHHhcC----C--CchHHHHHHHHh
Q 002834 566 YAENDFPNQALSLFLKLQAQGMKPDA----VTIMSLLPVCSQMASVHLLRQCHGYVIRACF----D--GVRLNGALLHLY 635 (875)
Q Consensus 566 ~~~~~~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~----~--~~~~~~~l~~~~ 635 (875)
+...|++++|...+++....-...+. .....+...+...|+++.+...+........ . .......+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 67899999999999997763111121 1233344456678999999998887765422 2 223455667788
Q ss_pred HhcCCHHHHHHHhccCCC-------C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC--hhhHHHHHHH
Q 002834 636 AKCGSIFSASKIFQCHPQ-------K----DVVMLTAMIGGYAMHGMGKAALKVFSDMLEL--GVNPD--HVVITAVLSA 700 (875)
Q Consensus 636 ~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~~~~~ll~a 700 (875)
...|++++|...+++... + ....+..+...+...|++++|...+++.... ...+. ...+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 889999999998876432 1 1223445566677789999999999987653 11222 2234445557
Q ss_pred HhhcCcHHHHHHHHHHhHHHhCCCCChhHH-----HHHHHHhhcCCChHHHHHHHHhCCCC--CCH----HHHHHHHHHH
Q 002834 701 CSHAGLVDEGLEIFRSIEKVQGIKPTPEQY-----ASLVDLLARGGQISDAYSLVNRMPVE--ADC----NVWGTLLGAC 769 (875)
Q Consensus 701 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~--p~~----~~~~~l~~~~ 769 (875)
....|+.++|.+.++++............+ ......+...|+.++|.+++...... ... ..+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 778999999999999886532221111111 11224455689999999998776421 111 1134566677
Q ss_pred HhcCChhHHHHHHHHHhcccCCCCcc------HHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 002834 770 RIHHEVELGRVVANRLFEMEADNIGN------YVVMSNLYAADARWDGVVEIRKLMKTRD 823 (875)
Q Consensus 770 ~~~~~~~~a~~~~~~~~~~~p~~~~~------~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 823 (875)
...|+.+.|...++++++........ +..++.+|...|+.++|.+.+.+..+..
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 78899999999999999986554433 3356888999999999999999988754
No 140
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.01 E-value=0.043 Score=60.55 Aligned_cols=487 Identities=13% Similarity=0.078 Sum_probs=222.4
Q ss_pred hHhcCChhHHHHHhhhcCC---CCccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChhhH
Q 002834 296 YLRFGRTEEAELLFRRMKS---RDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVG 372 (875)
Q Consensus 296 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a 372 (875)
..+.|+.++|..+++.... .|..|...+-..|...++.++|..+|++..+.. |+..-...+..++.+.+++..-
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~---P~eell~~lFmayvR~~~yk~q 129 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKY---PSEELLYHLFMAYVREKSYKKQ 129 (932)
T ss_pred HHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC---CcHHHHHHHHHHHHHHHHHHHH
Confidence 3577888888888877654 366778888888888899999999998888754 7777777777788777776655
Q ss_pred HHHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHCC-C
Q 002834 373 KEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEG-I 451 (875)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~ 451 (875)
.+.--++.+. .+......|+ +++.+... ...++..... + -..-|...++.+++.+ -
T Consensus 130 Qkaa~~LyK~-~pk~~yyfWs-V~Slilqs------------~~~~~~~~~~-i--------~l~LA~~m~~~~l~~~gk 186 (932)
T KOG2053|consen 130 QKAALQLYKN-FPKRAYYFWS-VISLILQS------------IFSENELLDP-I--------LLALAEKMVQKLLEKKGK 186 (932)
T ss_pred HHHHHHHHHh-CCcccchHHH-HHHHHHHh------------ccCCcccccc-h--------hHHHHHHHHHHHhccCCc
Confidence 4444333332 1222221222 22221111 0011100000 0 0011222333333322 1
Q ss_pred CCChhhHHHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-CCcccHHH
Q 002834 452 RPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEK-RNLVTFNP 530 (875)
Q Consensus 452 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~ 530 (875)
.-+..-...-+......+.+++|..++..-...... +.+...-+--++.+...+++.+..++-.++..+ +|- |..
T Consensus 187 ~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~--~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd--y~~ 262 (932)
T KOG2053|consen 187 IESEAEIILYLLILELQGKYQEALEFLAITLAEKLT--SANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD--YKI 262 (932)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcc--ccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc--hHH
Confidence 111111111122233344455555544222211110 223333345556666666666666666666554 222 332
Q ss_pred HHHHh----------------hcCCChHHHHHHHHhhhcC-CCccHHHHHHHHHH---cCCchHHHHHHHHHHHCCCCCC
Q 002834 531 VISGY----------------ANCGSADEAFMTFSRIYAR-DLTPWNLMIRVYAE---NDFPNQALSLFLKLQAQGMKPD 590 (875)
Q Consensus 531 l~~~~----------------~~~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~---~~~~~~A~~~~~~m~~~g~~p~ 590 (875)
.+..+ ...+..+...+..++.... .-.||-+-+..+.+ -|+.++++..|-+-. |-.|
T Consensus 263 ~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kf--g~kp- 339 (932)
T KOG2053|consen 263 YTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKKF--GDKP- 339 (932)
T ss_pred HHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHHh--CCCc-
Confidence 22211 1122333333333333333 33345555555444 477777655443321 2222
Q ss_pred cchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCc---h---HHHHHHHHhHhcCCH---------H---HHHHHhccCC
Q 002834 591 AVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGV---R---LNGALLHLYAKCGSI---------F---SASKIFQCHP 652 (875)
Q Consensus 591 ~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~---~---~~~~l~~~~~~~g~~---------~---~A~~~~~~~~ 652 (875)
.+..=+..+...=..+.-..+............ . .+...+..-.-.|.+ . +-...|+...
T Consensus 340 --cc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gl 417 (932)
T KOG2053|consen 340 --CCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGL 417 (932)
T ss_pred --HhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccc
Confidence 111111111111111111111111111100000 0 000111111111110 0 0011111111
Q ss_pred C------C------Ch---hhHHHHHHHHHHcCChH---HHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHH
Q 002834 653 Q------K------DV---VMLTAMIGGYAMHGMGK---AALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIF 714 (875)
Q Consensus 653 ~------~------~~---~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~ 714 (875)
. | +. -+-|.|+..+-+.++.. +|+.+++...... +-|..+-..+++.|+-.|-+..|.+.|
T Consensus 418 s~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y 496 (932)
T KOG2053|consen 418 SLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELY 496 (932)
T ss_pred cccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHH
Confidence 0 1 11 24567788888887654 6777777766642 334455566777899999999999999
Q ss_pred HHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCC
Q 002834 715 RSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP--VEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADN 792 (875)
Q Consensus 715 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 792 (875)
+.+.- ..|.-|...|. +...+...|++..+...++... ...+..--.-++.-..++|.+.+-.+...---.+.-..
T Consensus 497 ~tLdI-K~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g~ySkI~em~~fr~rL~~S~ 574 (932)
T KOG2053|consen 497 KTLDI-KNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYRRGAYSKIPEMLAFRDRLMHSL 574 (932)
T ss_pred Hhcch-HHhhhccchHH-HHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCchhhhHHHHHHHHHHHHHH
Confidence 88754 34555543222 3345566778877777766652 11111111122333346677666544422111111110
Q ss_pred ----CccHHHHHHHHHhcCCchhHHHHHHHHH
Q 002834 793 ----IGNYVVMSNLYAADARWDGVVEIRKLMK 820 (875)
Q Consensus 793 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 820 (875)
...-..........++..+-.+....|+
T Consensus 575 q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 575 QKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 0112233445666777777777777776
No 141
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.96 E-value=1.4e-05 Score=50.78 Aligned_cols=34 Identities=35% Similarity=0.637 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh
Q 002834 658 MLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDH 691 (875)
Q Consensus 658 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 691 (875)
+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6899999999999999999999999999988873
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.96 E-value=0.00016 Score=64.39 Aligned_cols=124 Identities=14% Similarity=0.096 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCCh--hHHHH
Q 002834 658 MLTAMIGGYAMHGMGKAALKVFSDMLELGVNPD---HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTP--EQYAS 732 (875)
Q Consensus 658 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~ 732 (875)
.|..++..+ ..++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+... ...|.. .....
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 344444444 2555666666666665541 111 112222334555566666666666666552 211111 13333
Q ss_pred HHHHhhcCCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 002834 733 LVDLLARGGQISDAYSLVNRMPVEA-DCNVWGTLLGACRIHHEVELGRVVANR 784 (875)
Q Consensus 733 l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 784 (875)
+..++...|++++|+..++..+..+ .+..+.....++...|+.+.|+..|++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4555555566666665555543111 222333333444444444444444443
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.95 E-value=0.00045 Score=61.59 Aligned_cols=122 Identities=13% Similarity=0.046 Sum_probs=84.6
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCCH----HHHHHHHHH
Q 002834 695 TAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEADC----NVWGTLLGA 768 (875)
Q Consensus 695 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~l~~~ 768 (875)
..++.++ ..++...+...++.+.+.++-.|- ....-.+...+...|++++|...++.+. ..|++ .....|...
T Consensus 16 ~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~ 94 (145)
T PF09976_consen 16 EQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARI 94 (145)
T ss_pred HHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Confidence 3334433 477888888888888775433321 2355567788888899999998888875 23443 344556677
Q ss_pred HHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHH
Q 002834 769 CRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKL 818 (875)
Q Consensus 769 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 818 (875)
+...|+++.|...++.. .-.|-.+..+.++|++|.+.|++++|...++.
T Consensus 95 ~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 95 LLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77888999888888662 33344566777889999999999999887764
No 144
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.94 E-value=1.2e-05 Score=51.06 Aligned_cols=34 Identities=35% Similarity=0.643 Sum_probs=32.4
Q ss_pred eeHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCC
Q 002834 213 VSWNAVISGLSENKVLGDAFRLFSWMLTEPIKPN 246 (875)
Q Consensus 213 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~ 246 (875)
.+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 4799999999999999999999999999999996
No 145
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.90 E-value=5.2e-05 Score=71.96 Aligned_cols=89 Identities=11% Similarity=0.064 Sum_probs=80.1
Q ss_pred HHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCch
Q 002834 733 LVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWD 810 (875)
Q Consensus 733 l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 810 (875)
=++-+.+.+++++|+..|.++. +.| |++.|..-..+|.+.|.++.|++..+.++.+||....+|..||.+|...|+++
T Consensus 87 eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 87 EGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 3456778899999999999885 666 67889999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHh
Q 002834 811 GVVEIRKLMKT 821 (875)
Q Consensus 811 ~A~~~~~~~~~ 821 (875)
+|++.+++..+
T Consensus 167 ~A~~aykKaLe 177 (304)
T KOG0553|consen 167 EAIEAYKKALE 177 (304)
T ss_pred HHHHHHHhhhc
Confidence 99999877544
No 146
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.88 E-value=1.2e-05 Score=63.77 Aligned_cols=78 Identities=6% Similarity=0.110 Sum_probs=50.6
Q ss_pred CCChHHHHHHHHhCC-CCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHH
Q 002834 740 GGQISDAYSLVNRMP-VEA---DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEI 815 (875)
Q Consensus 740 ~g~~~~A~~~~~~~~-~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 815 (875)
.|++++|+.+++++. ..| +...|..+..++...|++++|...+++ .+.+|.++.....+|.+|.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 355666666666553 222 344555566666777777777777777 666777766677778888888888888887
Q ss_pred HHH
Q 002834 816 RKL 818 (875)
Q Consensus 816 ~~~ 818 (875)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
No 147
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.86 E-value=1.7e-05 Score=49.88 Aligned_cols=34 Identities=26% Similarity=0.406 Sum_probs=31.8
Q ss_pred eeeHHHHHHHHHcCCCcchHHHHHHHHHhCCCCC
Q 002834 212 VVSWNAVISGLSENKVLGDAFRLFSWMLTEPIKP 245 (875)
Q Consensus 212 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p 245 (875)
+.+||.+|.+|++.|+++.|.++|++|++.|+.|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999987
No 148
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.84 E-value=9.7e-05 Score=60.56 Aligned_cols=92 Identities=14% Similarity=0.178 Sum_probs=72.8
Q ss_pred HHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcC
Q 002834 730 YASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADA 807 (875)
Q Consensus 730 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 807 (875)
+..++..+...|++++|...++++. ..| +...+..+...+...++++.|...++++++..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 4556677777888888888887763 334 34667777777788889999999999999999988888889999999999
Q ss_pred CchhHHHHHHHHHh
Q 002834 808 RWDGVVEIRKLMKT 821 (875)
Q Consensus 808 ~~~~A~~~~~~~~~ 821 (875)
++++|.+.++....
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999988776543
No 149
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.83 E-value=3.2e-05 Score=48.61 Aligned_cols=33 Identities=36% Similarity=0.531 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 002834 657 VMLTAMIGGYAMHGMGKAALKVFSDMLELGVNP 689 (875)
Q Consensus 657 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 689 (875)
.+||.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777776
No 150
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.82 E-value=3.3e-05 Score=58.50 Aligned_cols=63 Identities=13% Similarity=0.145 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcC-CchhHHHHHHHHH
Q 002834 758 DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADA-RWDGVVEIRKLMK 820 (875)
Q Consensus 758 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~ 820 (875)
++.+|..+...+...|+++.|+..++++++++|+++.+|..+|.+|...| ++++|++.+++..
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 46788889999999999999999999999999999999999999999999 7999999776654
No 151
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.82 E-value=0.00079 Score=62.24 Aligned_cols=181 Identities=10% Similarity=0.060 Sum_probs=139.4
Q ss_pred hcCCHHHHHHHhccCCC--------CCh-hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHH-HHhhcCc
Q 002834 637 KCGSIFSASKIFQCHPQ--------KDV-VMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLS-ACSHAGL 706 (875)
Q Consensus 637 ~~g~~~~A~~~~~~~~~--------~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~-a~~~~g~ 706 (875)
...+.++..+++..+.. ++. ..|..++-+....|+.+.|...++++... + |.+.-...+-. -+-..|.
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhc
Confidence 35677888888876543 333 24555666777889999999999999886 4 65544333333 3556799
Q ss_pred HHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 002834 707 VDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP--VEADCNVWGTLLGACRIHHEVELGRVVANR 784 (875)
Q Consensus 707 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 784 (875)
+++|.++++...++ -+-|..++-.-+-++-..|+.-+|++-+.... +..|...|..+...|...|++++|.-.+++
T Consensus 102 ~~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 102 YKEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 99999999999874 23345577777777788898889998877763 778999999999999999999999999999
Q ss_pred HhcccCCCCccHHHHHHHHHhcCCc---hhHHHHHHHHHh
Q 002834 785 LFEMEADNIGNYVVMSNLYAADARW---DGVVEIRKLMKT 821 (875)
Q Consensus 785 ~~~~~p~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~ 821 (875)
++-..|-++-.+..|+.+++-.|-. +-|.+.+.+..+
T Consensus 180 ~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 180 LLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888754 445555555443
No 152
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.80 E-value=0.00022 Score=74.11 Aligned_cols=102 Identities=10% Similarity=0.109 Sum_probs=77.7
Q ss_pred HHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCC
Q 002834 698 LSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHE 774 (875)
Q Consensus 698 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~ 774 (875)
...+...|++++|++.|+++.+ ..|+ ...|..++.+|.+.|++++|+..++++. ..| +...|..+..+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 4456677888888888888876 4554 4477778888888888888888888774 455 45677777778888888
Q ss_pred hhHHHHHHHHHhcccCCCCccHHHHHHH
Q 002834 775 VELGRVVANRLFEMEADNIGNYVVMSNL 802 (875)
Q Consensus 775 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 802 (875)
++.|+..++++++++|+++.....+..+
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 8888888888888888888776665544
No 153
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.79 E-value=3.8e-05 Score=57.28 Aligned_cols=58 Identities=10% Similarity=0.138 Sum_probs=49.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 002834 765 LLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTR 822 (875)
Q Consensus 765 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 822 (875)
+...+...|+++.|+..++++++.+|+++..+..+|.++...|++++|+..+++..+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4456778899999999999999999999999999999999999999999988877643
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.77 E-value=0.00018 Score=61.83 Aligned_cols=91 Identities=8% Similarity=-0.088 Sum_probs=46.0
Q ss_pred HHHHHHhhcCCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCC---CccHHHHHHH
Q 002834 731 ASLVDLLARGGQISDAYSLVNRMP-VEAD----CNVWGTLLGACRIHHEVELGRVVANRLFEMEADN---IGNYVVMSNL 802 (875)
Q Consensus 731 ~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~ 802 (875)
...+..+.+.|++++|.+.++++. ..|+ ...+..+..++...|+++.|...+++++...|++ +..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 334444455555555555554442 1221 1233444455555555555555555555555553 2345555566
Q ss_pred HHhcCCchhHHHHHHHHHh
Q 002834 803 YAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 803 ~~~~g~~~~A~~~~~~~~~ 821 (875)
|...|++++|.+.++.+.+
T Consensus 86 ~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHhCChHHHHHHHHHHHH
Confidence 6666666666665555443
No 155
>PRK15331 chaperone protein SicA; Provisional
Probab=97.76 E-value=0.00022 Score=62.06 Aligned_cols=101 Identities=8% Similarity=0.066 Sum_probs=83.2
Q ss_pred hCCCCCh-hHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHH
Q 002834 721 QGIKPTP-EQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYV 797 (875)
Q Consensus 721 ~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 797 (875)
.|+.++. +.......-+..+|++++|..+|.-+- ..| ++..|..|...|...++++.|+..|-.+..++++||.+++
T Consensus 30 ~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f 109 (165)
T PRK15331 30 HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVF 109 (165)
T ss_pred hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccc
Confidence 3455442 234445556677899999999998774 344 6677888888889999999999999999999999999999
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHh
Q 002834 798 VMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 798 ~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
..|..|...|+.++|...+....+
T Consensus 110 ~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 110 FTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred hHHHHHHHhCCHHHHHHHHHHHHh
Confidence 999999999999999999887654
No 156
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.00024 Score=68.14 Aligned_cols=101 Identities=11% Similarity=0.063 Sum_probs=86.3
Q ss_pred CCChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhc---CChhHHHHHHHHHhcccCCCCccHHH
Q 002834 724 KPTPEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIH---HEVELGRVVANRLFEMEADNIGNYVV 798 (875)
Q Consensus 724 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~p~~~~~~~~ 798 (875)
+-|.+.|..|+.+|.+.|+.+.|...|.+.. +.| ++..+..+..++... ....++..++++++.+||.|+.....
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 4457799999999999999999999998884 444 567777777776543 35789999999999999999999999
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhCCC
Q 002834 799 MSNLYAADARWDGVVEIRKLMKTRDL 824 (875)
Q Consensus 799 l~~~~~~~g~~~~A~~~~~~~~~~~~ 824 (875)
|+..++++|++.+|...++.|.+...
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 99999999999999999999987543
No 157
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.73 E-value=0.00036 Score=59.93 Aligned_cols=103 Identities=11% Similarity=-0.006 Sum_probs=63.4
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCC----HHHHHHHHH
Q 002834 694 ITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEAD----CNVWGTLLG 767 (875)
Q Consensus 694 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~ 767 (875)
+..+...+...|++++|.+.|+++.+.+.-.|. ...+..++.++.+.|++++|.+.++.+. ..|+ ...+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 344455556666666666666666552211111 2345556667777777777777776653 2232 345666666
Q ss_pred HHHhcCChhHHHHHHHHHhcccCCCCccH
Q 002834 768 ACRIHHEVELGRVVANRLFEMEADNIGNY 796 (875)
Q Consensus 768 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 796 (875)
++...|+.+.|...++++++..|+++...
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 77777888888888888888888776543
No 158
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.70 E-value=0.062 Score=53.36 Aligned_cols=238 Identities=16% Similarity=0.126 Sum_probs=164.4
Q ss_pred HHcCCchHHHHHHHHHHHCCCCCCc--chHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHH
Q 002834 567 AENDFPNQALSLFLKLQAQGMKPDA--VTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSA 644 (875)
Q Consensus 567 ~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 644 (875)
.-.|++++|.+-|+.|... |.. ..+..|.-...+.|..+.+.++-+.....-+.-+....+.+...+..|+++.|
T Consensus 131 l~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~A 207 (531)
T COG3898 131 LLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGA 207 (531)
T ss_pred HhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHH
Confidence 4578999999999998752 222 22334444556778889999988888888888888888999999999999999
Q ss_pred HHHhccCCC-----CChh--hHHHHHHHHH---HcCChHHHHHHHHHHHHCCCCCChhhHHHH-HHHHhhcCcHHHHHHH
Q 002834 645 SKIFQCHPQ-----KDVV--MLTAMIGGYA---MHGMGKAALKVFSDMLELGVNPDHVVITAV-LSACSHAGLVDEGLEI 713 (875)
Q Consensus 645 ~~~~~~~~~-----~~~~--~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~a~~~~g~~~~a~~~ 713 (875)
+++++.-.. +++. .--.|+.+-+ -.-+...|...-.+..+ +.||.+.-..+ ..++.+.|+..++-.+
T Consensus 208 lkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~i 285 (531)
T COG3898 208 LKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKI 285 (531)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhH
Confidence 999986443 4443 1222332222 12355666666655555 67776553333 4489999999999999
Q ss_pred HHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 002834 714 FRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRM----PVEADC-NVWGTLLGACRIHHEVELGRVVANRLFEM 788 (875)
Q Consensus 714 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 788 (875)
++.+-+ ..|.+..+.. ..+.|.|+... +-++.. ..+||. ....+...+....|++..|....+.+...
T Consensus 286 lE~aWK---~ePHP~ia~l--Y~~ar~gdta~--dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~ 358 (531)
T COG3898 286 LETAWK---AEPHPDIALL--YVRARSGDTAL--DRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE 358 (531)
T ss_pred HHHHHh---cCCChHHHHH--HHHhcCCCcHH--HHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 999965 5565554432 23456665432 222222 246654 55666777778899999999999999999
Q ss_pred cCCCCccHHHHHHHHHhc-CCchhHHHHHH
Q 002834 789 EADNIGNYVVMSNLYAAD-ARWDGVVEIRK 817 (875)
Q Consensus 789 ~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~ 817 (875)
+|.. ..|.+|+.+-... |+-.++.....
T Consensus 359 ~pre-s~~lLlAdIeeAetGDqg~vR~wlA 387 (531)
T COG3898 359 APRE-SAYLLLADIEEAETGDQGKVRQWLA 387 (531)
T ss_pred Cchh-hHHHHHHHHHhhccCchHHHHHHHH
Confidence 9964 5688899987776 88888877543
No 159
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.69 E-value=0.00038 Score=72.36 Aligned_cols=105 Identities=10% Similarity=0.105 Sum_probs=83.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhc
Q 002834 661 AMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLAR 739 (875)
Q Consensus 661 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 739 (875)
.....+...|++++|++.|++.++.. +-+...|..+..+|.+.|++++|+..++++.+ +.|+ ...|..++.+|..
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHH
Confidence 34566778899999999999999852 33455677777799999999999999999977 5665 4588899999999
Q ss_pred CCChHHHHHHHHhCC-CCCCHHHHHHHHHHH
Q 002834 740 GGQISDAYSLVNRMP-VEADCNVWGTLLGAC 769 (875)
Q Consensus 740 ~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~ 769 (875)
.|++++|+..+++.. ..|+......++..|
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999885 677665555555444
No 160
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.67 E-value=0.00098 Score=61.50 Aligned_cols=130 Identities=13% Similarity=0.215 Sum_probs=91.8
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHH
Q 002834 655 DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPD--HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYA 731 (875)
Q Consensus 655 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~ 731 (875)
....+..+...+...|++++|+..|++..+....+. ...+..+..++.+.|++++|...++++.+ ..|+ ...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHH
Confidence 344677778888888999999999998887533332 34677777788899999999999988876 4454 44667
Q ss_pred HHHHHhhcCCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCC
Q 002834 732 SLVDLLARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADAR 808 (875)
Q Consensus 732 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 808 (875)
.++.++...|+...+..-++.. ...++.|.+.++++++++|++ |......+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 7778888877766655433321 123677889999999999887 5445555554444
No 161
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.65 E-value=2.6e-05 Score=48.40 Aligned_cols=33 Identities=18% Similarity=0.451 Sum_probs=31.2
Q ss_pred HHHHhcccCCCCccHHHHHHHHHhcCCchhHHH
Q 002834 782 ANRLFEMEADNIGNYVVMSNLYAADARWDGVVE 814 (875)
Q Consensus 782 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 814 (875)
++++++++|+++.+|..||++|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 689999999999999999999999999999963
No 162
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.00058 Score=67.60 Aligned_cols=264 Identities=10% Similarity=0.017 Sum_probs=151.1
Q ss_pred HHHHhhcCCChHHHHHHHHhhhcCCCcc---HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCc-chHhcHHHHhhcccc
Q 002834 531 VISGYANCGSADEAFMTFSRIYARDLTP---WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDA-VTIMSLLPVCSQMAS 606 (875)
Q Consensus 531 l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~a~~~~~~ 606 (875)
....+.+..++..|+..+....+..+.. |..-+..+..-+++++|+--.+.-.+ ++|.. ......-+++...+.
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r--~kd~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVR--LKDGFSKGQLREGQCHLALSD 132 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhhee--cCCCccccccchhhhhhhhHH
Confidence 3445666777777777777665544333 66666677777777776655444332 23321 123333334444444
Q ss_pred hHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC-----CChhhHHHH-HHHHHHcCChHHHHHHHH
Q 002834 607 VHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ-----KDVVMLTAM-IGGYAMHGMGKAALKVFS 680 (875)
Q Consensus 607 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l-i~~~~~~g~~~~A~~~~~ 680 (875)
...+.+.+..- . . +....|+..++.... |-...|..+ ..++.-.|+.++|...--
T Consensus 133 ~i~A~~~~~~~--------~-------~----~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~ 193 (486)
T KOG0550|consen 133 LIEAEEKLKSK--------Q-------A----YKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAI 193 (486)
T ss_pred HHHHHHHhhhh--------h-------h----hHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHH
Confidence 44444333200 0 0 011122222222221 222334333 245667788888877776
Q ss_pred HHHHCCCCCC-hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChh-------------HHHHHHHHhhcCCChHHH
Q 002834 681 DMLELGVNPD-HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPE-------------QYASLVDLLARGGQISDA 746 (875)
Q Consensus 681 ~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-------------~~~~l~~~~~~~g~~~~A 746 (875)
..++. .++ ......-..++...++.+.|...|++..+ ..|+.. .+..=++-..+.|++.+|
T Consensus 194 ~ilkl--d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A 268 (486)
T KOG0550|consen 194 DILKL--DATNAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKA 268 (486)
T ss_pred HHHhc--ccchhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHH
Confidence 66553 222 22221112245567788888888887754 555522 112223445678888888
Q ss_pred HHHHHhCC-CCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHH-HHHH
Q 002834 747 YSLVNRMP-VEAD-----CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEI-RKLM 819 (875)
Q Consensus 747 ~~~~~~~~-~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~ 819 (875)
.+.+.+.. +.|+ ...|........+.|+.+.|+.-.+.+++++|.-..+|..-++.|...++|++|.+- .+.|
T Consensus 269 ~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 269 YECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAM 348 (486)
T ss_pred HHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887774 4443 344555555666788888888888888888888888888888888888888888884 4444
Q ss_pred H
Q 002834 820 K 820 (875)
Q Consensus 820 ~ 820 (875)
+
T Consensus 349 q 349 (486)
T KOG0550|consen 349 Q 349 (486)
T ss_pred h
Confidence 3
No 163
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.64 E-value=0.0017 Score=70.54 Aligned_cols=139 Identities=14% Similarity=0.118 Sum_probs=67.3
Q ss_pred CChhhHHHHHHHHHHc--C---ChHHHHHHHHHHHHCCCCCChhh-HHHHHHHHhhc--------CcHHHHHHHHHHhHH
Q 002834 654 KDVVMLTAMIGGYAMH--G---MGKAALKVFSDMLELGVNPDHVV-ITAVLSACSHA--------GLVDEGLEIFRSIEK 719 (875)
Q Consensus 654 ~~~~~~~~li~~~~~~--g---~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~a~~~~--------g~~~~a~~~~~~~~~ 719 (875)
.+..+|...+.+.... + ...+|+.+|++..+ ..|+... +..+..++... +++..+.+..++...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 4566666666654432 2 25677888888777 4666432 22222222111 112223333332222
Q ss_pred HhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCc
Q 002834 720 VQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP-VEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIG 794 (875)
Q Consensus 720 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 794 (875)
......+...|..+.-.....|++++|...++++. ..|+...|..+...+...|+.++|...+++++.++|.++.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 10112223344444444444556666665555553 4455555555555555556666666666666666665554
No 164
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.61 E-value=0.0075 Score=63.25 Aligned_cols=210 Identities=13% Similarity=0.131 Sum_probs=121.9
Q ss_pred HHHhHhcCChhHHHHHhhhcCCCCccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChhhH
Q 002834 293 VSFYLRFGRTEEAELLFRRMKSRDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVG 372 (875)
Q Consensus 293 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a 372 (875)
...++-.|.+.+|.++|.+ .|.-..|+++|.+|+--. ..+-+...|+.++-
T Consensus 639 A~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRMFD-----------~aQE~~~~g~~~eK 689 (1081)
T KOG1538|consen 639 ADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRMFD-----------YAQEFLGSGDPKEK 689 (1081)
T ss_pred HHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHHHH-----------HHHHHhhcCChHHH
Confidence 3445567788888777655 466667777776654321 12223344444444
Q ss_pred HHHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHCCCC
Q 002834 373 KEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIR 452 (875)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 452 (875)
+.+.+.-.+.......+ .+...++...|+.++|..+. ..+|-.+-+.++-+++-.
T Consensus 690 KmL~RKRA~WAr~~keP---kaAAEmLiSaGe~~KAi~i~------------------~d~gW~d~lidI~rkld~---- 744 (1081)
T KOG1538|consen 690 KMLIRKRADWARNIKEP---KAAAEMLISAGEHVKAIEIC------------------GDHGWVDMLIDIARKLDK---- 744 (1081)
T ss_pred HHHHHHHHHHhhhcCCc---HHHHHHhhcccchhhhhhhh------------------hcccHHHHHHHHHhhcch----
Confidence 44444433332222211 23344555566666654432 333434444444333321
Q ss_pred CChhhHHHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcccHHHHH
Q 002834 453 PDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVI 532 (875)
Q Consensus 453 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~ 532 (875)
.+..+...+-.-+.+...+..|.++|..+-+. ..++++....+++++|..+-++.++- -...|-.-.
T Consensus 745 ~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~------------ksiVqlHve~~~W~eAFalAe~hPe~-~~dVy~pya 811 (1081)
T KOG1538|consen 745 AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL------------KSLVQLHVETQRWDEAFALAEKHPEF-KDDVYMPYA 811 (1081)
T ss_pred hhhhHHHHHHHHHhhccccchHHHHHHHhccH------------HHHhhheeecccchHhHhhhhhCccc-cccccchHH
Confidence 12233333333344556666777777666544 45788888999999999999888774 222344445
Q ss_pred HHhhcCCChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCchHHHHHHHHHHHCCC
Q 002834 533 SGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQAQGM 587 (875)
Q Consensus 533 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~ 587 (875)
+-++...++++|.+.| .+.|+..+|..+++++....+
T Consensus 812 qwLAE~DrFeEAqkAf------------------hkAGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 812 QWLAENDRFEEAQKAF------------------HKAGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred HHhhhhhhHHHHHHHH------------------HHhcchHHHHHHHHHhhhhhh
Confidence 5566777888887776 788999999999998876544
No 165
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.57 E-value=0.00041 Score=64.01 Aligned_cols=80 Identities=10% Similarity=0.034 Sum_probs=58.2
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHH
Q 002834 729 QYASLVDLLARGGQISDAYSLVNRMP-VEAD----CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLY 803 (875)
Q Consensus 729 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 803 (875)
.+..++..+...|++++|...+++.. ..|+ ...|..+...+...|+++.|+..++++++..|+++..+..++.+|
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 45556666666666666666666552 1222 356777777788888888888888888888888888888888888
Q ss_pred HhcCC
Q 002834 804 AADAR 808 (875)
Q Consensus 804 ~~~g~ 808 (875)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 88777
No 166
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.56 E-value=8.5e-05 Score=45.43 Aligned_cols=31 Identities=29% Similarity=0.469 Sum_probs=26.0
Q ss_pred eeHHHHHHHHHcCCCcchHHHHHHHHHhCCC
Q 002834 213 VSWNAVISGLSENKVLGDAFRLFSWMLTEPI 243 (875)
Q Consensus 213 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~ 243 (875)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887764
No 167
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.54 E-value=0.002 Score=56.45 Aligned_cols=124 Identities=8% Similarity=-0.003 Sum_probs=54.3
Q ss_pred CCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCC-ChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC---CHHHH
Q 002834 688 NPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKP-TPEQYASLVDLLARGGQISDAYSLVNRMP-VEA---DCNVW 762 (875)
Q Consensus 688 ~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p---~~~~~ 762 (875)
-|+...-..|..+....|+..+|...|++... |+-. |....-.+.++....++..+|...+++.. ..| .+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 34444444444455555555555555554433 2222 23344444444444555555554444431 111 11222
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHH
Q 002834 763 GTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVE 814 (875)
Q Consensus 763 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 814 (875)
..+...+...|..+.|+..++.++.-.|. +..-..++..+.++|+.++|..
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHH
Confidence 23334444455555555555555554442 2233334444455555444443
No 168
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.53 E-value=0.0078 Score=56.38 Aligned_cols=148 Identities=13% Similarity=0.062 Sum_probs=109.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHh----h
Q 002834 663 IGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLL----A 738 (875)
Q Consensus 663 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~----~ 738 (875)
...|+..|++++|+....... .......+ ...+.+..+++-|.+.+++|.+ +.- ..+.+.|..++ .
T Consensus 115 a~i~~~~~~~deAl~~~~~~~----~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~---ide-d~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE----NLEAAALN--VQILLKMHRFDLAEKELKKMQQ---IDE-DATLTQLAQAWVKLAT 184 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc----hHHHHHHH--HHHHHHHHHHHHHHHHHHHHHc---cch-HHHHHHHHHHHHHHhc
Confidence 456788899999999887732 22222222 2345677789999999999966 332 23555454444 4
Q ss_pred cCCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHH-H
Q 002834 739 RGGQISDAYSLVNRMP--VEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVE-I 815 (875)
Q Consensus 739 ~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~ 815 (875)
-.++..+|.-+|++|. ..|++.+.+-.+.+|...||++.|+..++.++..+|++|.++..+.-.-.-.|+-.++.+ .
T Consensus 185 ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 4568999999999995 678888888888888999999999999999999999999888777766667788766655 4
Q ss_pred HHHHH
Q 002834 816 RKLMK 820 (875)
Q Consensus 816 ~~~~~ 820 (875)
...++
T Consensus 265 l~QLk 269 (299)
T KOG3081|consen 265 LSQLK 269 (299)
T ss_pred HHHHH
Confidence 55444
No 169
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.53 E-value=0.1 Score=52.83 Aligned_cols=80 Identities=10% Similarity=-0.028 Sum_probs=44.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhhccCCCcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCchHHHHH
Q 002834 499 ILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSL 578 (875)
Q Consensus 499 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 578 (875)
.+.-+...|....|.++-.+..- |+-.-|-..+.+++..++|++-..+-.. +..|..|..++.++.+.|+..+|..+
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~~~eA~~y 259 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFKV-PDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGNKKEASKY 259 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCCHHHHHHH
Confidence 34444455555555555544432 3555666666666666666655554332 34455566666666666666666555
Q ss_pred HHH
Q 002834 579 FLK 581 (875)
Q Consensus 579 ~~~ 581 (875)
..+
T Consensus 260 I~k 262 (319)
T PF04840_consen 260 IPK 262 (319)
T ss_pred HHh
Confidence 544
No 170
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.52 E-value=0.12 Score=51.44 Aligned_cols=244 Identities=15% Similarity=0.047 Sum_probs=149.4
Q ss_pred HhcCCHHHHHHHHHhhccCCCcc--cHHHHHHHhhcCCChHHHHHHHHhhhcCCCcc---HHHHHHHHHHcCCchHHHHH
Q 002834 504 AKCRNIKYAFNVFQSLLEKRNLV--TFNPVISGYANCGSADEAFMTFSRIYARDLTP---WNLMIRVYAENDFPNQALSL 578 (875)
Q Consensus 504 ~~~g~~~~A~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~ 578 (875)
.-.|+++.|.+-|+.|...|... -...|.-.-.+.|..+.|...-++....-+.. +...+...+..|+|+.|+++
T Consensus 131 l~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkL 210 (531)
T COG3898 131 LLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKL 210 (531)
T ss_pred HhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHH
Confidence 35688999999999998876432 23334444457788888888888776655444 67788888999999999999
Q ss_pred HHHHHHCC-CCCCcch--HhcHHHHhhc---ccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCC
Q 002834 579 FLKLQAQG-MKPDAVT--IMSLLPVCSQ---MASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHP 652 (875)
Q Consensus 579 ~~~m~~~g-~~p~~~~--~~~ll~a~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 652 (875)
++.-.... +.++..- -..|+.+-.. ..+...++..-....+..++-......-...+.+.|++.++-.+++.+-
T Consensus 211 vd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aW 290 (531)
T COG3898 211 VDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAW 290 (531)
T ss_pred HHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHH
Confidence 98765443 3444321 2233322211 1234455555556666655533333444567778888888888887765
Q ss_pred C--CChhhHHHHHHHHHHcCChHHHHHHHHHHHH-CCCCCC-hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChh
Q 002834 653 Q--KDVVMLTAMIGGYAMHGMGKAALKVFSDMLE-LGVNPD-HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPE 728 (875)
Q Consensus 653 ~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 728 (875)
+ |.+..|. ...+++.|+. ++.-+++..+ ..++|| ......+..+-...|++..|..--+...+ ..|...
T Consensus 291 K~ePHP~ia~--lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r---~~pres 363 (531)
T COG3898 291 KAEPHPDIAL--LYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR---EAPRES 363 (531)
T ss_pred hcCCChHHHH--HHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh---hCchhh
Confidence 5 3333332 2233444433 3333333222 114554 34555566677777888877776655544 677777
Q ss_pred HHHHHHHHhhcC-CChHHHHHHHHhCC
Q 002834 729 QYASLVDLLARG-GQISDAYSLVNRMP 754 (875)
Q Consensus 729 ~~~~l~~~~~~~-g~~~~A~~~~~~~~ 754 (875)
.|..|.++-... |+-.++..++-+..
T Consensus 364 ~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 364 AYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred HHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 887777776544 88888888877764
No 171
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.52 E-value=0.00011 Score=44.94 Aligned_cols=31 Identities=39% Similarity=0.643 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 002834 657 VMLTAMIGGYAMHGMGKAALKVFSDMLELGV 687 (875)
Q Consensus 657 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 687 (875)
++||+++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888887764
No 172
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.50 E-value=0.0041 Score=57.17 Aligned_cols=110 Identities=12% Similarity=0.104 Sum_probs=72.2
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHH
Q 002834 656 VVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPD--HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYAS 732 (875)
Q Consensus 656 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 732 (875)
...|..++..+...|++++|+..|++.......|. ..++..+...+.+.|+.++|+..+++..+ +.|+ ...+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHH
Confidence 34567777777888888888888888876432221 23677777788888888888888888766 3444 335555
Q ss_pred HHHHhh-------cCCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCC
Q 002834 733 LVDLLA-------RGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNI 793 (875)
Q Consensus 733 l~~~~~-------~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 793 (875)
++.++. +.|++++|.. .++.|...++++++.+|.+.
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~-------------------------~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEA-------------------------WFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHH-------------------------HHHHHHHHHHHHHHhCcccH
Confidence 666665 3333333332 23466777888888888653
No 173
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.48 E-value=0.016 Score=60.88 Aligned_cols=79 Identities=16% Similarity=0.231 Sum_probs=52.8
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHH
Q 002834 667 AMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDA 746 (875)
Q Consensus 667 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 746 (875)
+.+|..+-++++-.++-. .+..+...+..-+.+...+..|-++|.+|-. ...+++.....|+|+||
T Consensus 727 ~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eA 792 (1081)
T KOG1538|consen 727 GDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEA 792 (1081)
T ss_pred hcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHh
Confidence 445555555555555432 2344444444455566677788889988744 24578888999999999
Q ss_pred HHHHHhCC-CCCCH
Q 002834 747 YSLVNRMP-VEADC 759 (875)
Q Consensus 747 ~~~~~~~~-~~p~~ 759 (875)
..+-++.| +.||.
T Consensus 793 FalAe~hPe~~~dV 806 (1081)
T KOG1538|consen 793 FALAEKHPEFKDDV 806 (1081)
T ss_pred HhhhhhCccccccc
Confidence 99999987 56664
No 174
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.45 E-value=0.00032 Score=53.75 Aligned_cols=57 Identities=12% Similarity=0.067 Sum_probs=49.0
Q ss_pred HHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 002834 766 LGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTR 822 (875)
Q Consensus 766 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 822 (875)
...+...++++.|.+.++++++++|+++..+...|.+|...|++++|.+.++...+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 346778889999999999999999999999999999999999999999988777653
No 175
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.45 E-value=0.00025 Score=52.84 Aligned_cols=61 Identities=16% Similarity=0.193 Sum_probs=48.9
Q ss_pred HHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCC
Q 002834 733 LVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNI 793 (875)
Q Consensus 733 l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 793 (875)
++..+.+.|++++|.+.++++. ..| +...|..+..++...|+++.|...++++++.+|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4567788888999998888874 456 457788888888899999999999999999999875
No 176
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.42 E-value=0.00062 Score=62.62 Aligned_cols=91 Identities=9% Similarity=-0.133 Sum_probs=69.9
Q ss_pred hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHH
Q 002834 727 PEQYASLVDLLARGGQISDAYSLVNRMP-VEAD----CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSN 801 (875)
Q Consensus 727 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 801 (875)
...|..++..+...|++++|...+++.. ..|+ ..+|..+...+...|+.+.|+..++++++++|..+..+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 3455666777777788888888777763 2222 2478888888889999999999999999999999888888888
Q ss_pred HHH-------hcCCchhHHHHHH
Q 002834 802 LYA-------ADARWDGVVEIRK 817 (875)
Q Consensus 802 ~~~-------~~g~~~~A~~~~~ 817 (875)
+|. ..|++++|...++
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHH
Confidence 888 7888876655443
No 177
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.39 E-value=0.0014 Score=53.48 Aligned_cols=62 Identities=13% Similarity=0.117 Sum_probs=30.7
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccC
Q 002834 729 QYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEA 790 (875)
Q Consensus 729 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 790 (875)
.+..++.++...|++++|.+.++... ..| +...+..+...+...|+.+.|...++++++..|
T Consensus 36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 36 AYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 33344444444444444444444432 122 223455555555556666666666666665555
No 178
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.37 E-value=0.00049 Score=54.42 Aligned_cols=80 Identities=23% Similarity=0.431 Sum_probs=43.4
Q ss_pred cCChHHHHHHHHHHHHCCC-CCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHH
Q 002834 669 HGMGKAALKVFSDMLELGV-NPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDA 746 (875)
Q Consensus 669 ~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 746 (875)
.|+++.|+.+++++.+... .|+...+..+..++.+.|++++|.+++++. + ..|+ ......++.+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~-~---~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL-K---LDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH-T---HHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh-C---CCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 4566777777777766422 113333444555666777777777776651 1 2222 23333446666666777776
Q ss_pred HHHHHh
Q 002834 747 YSLVNR 752 (875)
Q Consensus 747 ~~~~~~ 752 (875)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666653
No 179
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.36 E-value=0.021 Score=57.52 Aligned_cols=124 Identities=10% Similarity=0.114 Sum_probs=70.5
Q ss_pred HHHHhHhc-CCHHHHHHHhccCCC-----CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-----hh-hH
Q 002834 631 LLHLYAKC-GSIFSASKIFQCHPQ-----KD----VVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPD-----HV-VI 694 (875)
Q Consensus 631 l~~~~~~~-g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~-~~ 694 (875)
+...|... |++++|.+.|++... .. ..++..++..+.+.|++++|+++|++....-...+ .. .|
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 33445454 555555555554332 11 23456677888889999999999998876532221 11 23
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHhHHHh-CCCCC--hhHHHHHHHHhhc--CCChHHHHHHHHhCC
Q 002834 695 TAVLSACSHAGLVDEGLEIFRSIEKVQ-GIKPT--PEQYASLVDLLAR--GGQISDAYSLVNRMP 754 (875)
Q Consensus 695 ~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~p~--~~~~~~l~~~~~~--~g~~~~A~~~~~~~~ 754 (875)
...+-++...||...|.+.|++..... ++..+ ......|++++-. ...+++|..-++++.
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 333446667789999999888875421 22222 2245566666643 446777777777763
No 180
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.36 E-value=0.00014 Score=54.77 Aligned_cols=51 Identities=10% Similarity=0.202 Sum_probs=39.5
Q ss_pred hcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 771 IHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 771 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
..|+++.|++.++++++.+|+++..+..++.+|.+.|++++|.++++.+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 567788888888888888888888888888888888888888887766543
No 181
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.34 E-value=0.00019 Score=54.04 Aligned_cols=48 Identities=27% Similarity=0.436 Sum_probs=22.5
Q ss_pred hcCcHHHHHHHHHHhHHHhCCCC-ChhHHHHHHHHhhcCCChHHHHHHHHhC
Q 002834 703 HAGLVDEGLEIFRSIEKVQGIKP-TPEQYASLVDLLARGGQISDAYSLVNRM 753 (875)
Q Consensus 703 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 753 (875)
..|++++|.++|+++.. ..| +...+..++.+|.+.|++++|.++++++
T Consensus 3 ~~~~~~~A~~~~~~~l~---~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQ---RNPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HTTHHHHHHHHHHHHHH---HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hccCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555555555555544 222 2334444555555555555555555544
No 182
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.31 E-value=0.021 Score=57.52 Aligned_cols=121 Identities=15% Similarity=0.160 Sum_probs=76.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhc-CcHHHHHHHHHHhHHHhCCCCC----hhHHHHHH
Q 002834 660 TAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHA-GLVDEGLEIFRSIEKVQGIKPT----PEQYASLV 734 (875)
Q Consensus 660 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~ 734 (875)
...+..|...|++..|-..+.++ ...|... |++++|+++|+++.+.+..... ..++..++
T Consensus 98 ~~A~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A 162 (282)
T PF14938_consen 98 EKAIEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAA 162 (282)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHH
Confidence 33456666777776666655553 4456666 8889999988888775433322 33667788
Q ss_pred HHhhcCCChHHHHHHHHhCC---CC-C--CHHHHHHHH---HHHHhcCChhHHHHHHHHHhcccCCCCcc
Q 002834 735 DLLARGGQISDAYSLVNRMP---VE-A--DCNVWGTLL---GACRIHHEVELGRVVANRLFEMEADNIGN 795 (875)
Q Consensus 735 ~~~~~~g~~~~A~~~~~~~~---~~-p--~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 795 (875)
..+.+.|++++|.+++++.. .. + ...+-..++ -.+...||...|.+.+++..+.+|....+
T Consensus 163 ~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s 232 (282)
T PF14938_consen 163 DLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASS 232 (282)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTS
T ss_pred HHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 89999999999999998863 11 1 111112222 23345689999999999999999876554
No 183
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.30 E-value=0.0049 Score=67.06 Aligned_cols=132 Identities=11% Similarity=0.113 Sum_probs=95.7
Q ss_pred CCCCChhhHHHHHHHHhh--c---CcHHHHHHHHHHhHHHhCCCCChh-HHHHHHHHhhcC--------CChHHHHHHHH
Q 002834 686 GVNPDHVVITAVLSACSH--A---GLVDEGLEIFRSIEKVQGIKPTPE-QYASLVDLLARG--------GQISDAYSLVN 751 (875)
Q Consensus 686 g~~p~~~~~~~ll~a~~~--~---g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~--------g~~~~A~~~~~ 751 (875)
+.+.|...|...+++... . +..+.|..+|+++.+ ..|+.. .|..+..++... +++..+.+...
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 356777888888886543 2 347799999999987 788853 555544444221 23345555555
Q ss_pred hCC----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 752 RMP----VEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 752 ~~~----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
+.. ...++.++..+.-.....|+++.|...++++++++| +...|..+|.+|...|+.++|.+.+++...
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 532 233456677776666678999999999999999999 578999999999999999999998766544
No 184
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.26 E-value=0.00049 Score=51.98 Aligned_cols=64 Identities=11% Similarity=0.132 Sum_probs=50.2
Q ss_pred hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcC-ChhHHHHHHHHHhcccC
Q 002834 727 PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHH-EVELGRVVANRLFEMEA 790 (875)
Q Consensus 727 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p 790 (875)
...|..++..+...|++++|+..+++.. ..| ++.+|..+..++...| +++.|++.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4567777788888888888888887764 455 4477888888888888 68999999999999887
No 185
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.20 E-value=0.32 Score=49.36 Aligned_cols=107 Identities=12% Similarity=0.082 Sum_probs=82.5
Q ss_pred HHHHHHHhcCCChhHHHHHHHhcCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchh
Q 002834 393 NALVSFYAKCSDMEAAYRTFLMICRRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREG 472 (875)
Q Consensus 393 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 472 (875)
+.-+.-+...|....|.++-.+..-|+...|-..+.+++..++|++-..+-.. +-++.-|..++.+|...|...
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 44455667788899999999999889999999999999999999887765432 234578888889998888888
Q ss_pred hHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 002834 473 MVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQS 518 (875)
Q Consensus 473 ~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 518 (875)
.|..+...+.. ..-+..|.++|++.+|.+.--+
T Consensus 255 eA~~yI~k~~~-------------~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 255 EASKYIPKIPD-------------EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHhCCh-------------HHHHHHHHHCCCHHHHHHHHHH
Confidence 88877765221 4567888888888888766443
No 186
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.18 E-value=0.043 Score=55.92 Aligned_cols=166 Identities=17% Similarity=0.126 Sum_probs=103.0
Q ss_pred chHHHHHHHHhHhcCCHHHHHHHhccCCCC-C------hhhHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCChhhH
Q 002834 625 VRLNGALLHLYAKCGSIFSASKIFQCHPQK-D------VVMLTAMIGGYAM---HGMGKAALKVFSDMLELGVNPDHVVI 694 (875)
Q Consensus 625 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~------~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~ 694 (875)
..+...++-.|-...+++...++++.+... + ...-...+-++-+ .|+.++|+.++..+....-.++..+|
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 334444555577777777777777766652 1 1112233445555 78888999998886666567777777
Q ss_pred HHHHHHHhh---------cCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChH----HHHHHH---Hh-C----
Q 002834 695 TAVLSACSH---------AGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQIS----DAYSLV---NR-M---- 753 (875)
Q Consensus 695 ~~ll~a~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~----~A~~~~---~~-~---- 753 (875)
..+.+.|-. ....++|...|.+. +.+.|+..+--.++-++...|... +..++. .. .
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg 297 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG 297 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc
Confidence 766665422 23467888888877 457777543333333444444322 222222 11 1
Q ss_pred CCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCC
Q 002834 754 PVEA--DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNI 793 (875)
Q Consensus 754 ~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 793 (875)
...+ +-..+.+++.++...||.++|.+++++++++.|+.-
T Consensus 298 ~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 298 SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 1233 334556999999999999999999999999977643
No 187
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.10 E-value=0.011 Score=59.37 Aligned_cols=136 Identities=17% Similarity=0.085 Sum_probs=100.0
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH-HhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHH
Q 002834 657 VMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSA-CSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVD 735 (875)
Q Consensus 657 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 735 (875)
.+|-.++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|.++|+...+.++ .+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~--~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP--SDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT--T-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHH
Confidence 357788888888888999999999998542 3334444444443 3345677779999999988643 44566778888
Q ss_pred HhhcCCChHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCcc
Q 002834 736 LLARGGQISDAYSLVNRMP-VEADC----NVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGN 795 (875)
Q Consensus 736 ~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 795 (875)
.+.+.|+.+.|..++++.. .-|.. .+|..++..-.++|+++....+.+++.+..|++...
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~ 143 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSL 143 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHH
Confidence 8999999999999999885 23333 589999999999999999999999999998885543
No 188
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.08 E-value=0.0014 Score=64.67 Aligned_cols=125 Identities=10% Similarity=0.046 Sum_probs=90.1
Q ss_pred hhHHHHHHHHhhcCcHHHHHHHHHH---hHHHhCCCCCh-hHHHHHHHHhhcCCChHHHHHHHHhCC-------CC-CCH
Q 002834 692 VVITAVLSACSHAGLVDEGLEIFRS---IEKVQGIKPTP-EQYASLVDLLARGGQISDAYSLVNRMP-------VE-ADC 759 (875)
Q Consensus 692 ~~~~~ll~a~~~~g~~~~a~~~~~~---~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~-p~~ 759 (875)
..|..|...|.-.|+++.|+...+. +.+.+|-+... ..+..+.+++.-.|.++.|.+.++.-. .+ -..
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 3466666667778899999876553 22335555443 478889999999999999999987652 11 123
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhcccC------CCCccHHHHHHHHHhcCCchhHHHHH
Q 002834 760 NVWGTLLGACRIHHEVELGRVVANRLFEMEA------DNIGNYVVMSNLYAADARWDGVVEIR 816 (875)
Q Consensus 760 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~ 816 (875)
....+|.+.|....++++|+....+=+.+.. ....++..|++.|...|..++|+...
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fa 338 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFA 338 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4456778888888889999988776655421 23457899999999999999998853
No 189
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.07 E-value=0.0007 Score=45.30 Aligned_cols=42 Identities=14% Similarity=0.270 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHH
Q 002834 760 NVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSN 801 (875)
Q Consensus 760 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 801 (875)
.+|..+..++...|+++.|++.++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467888999999999999999999999999999998888764
No 190
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.06 E-value=0.011 Score=51.52 Aligned_cols=89 Identities=7% Similarity=-0.033 Sum_probs=49.5
Q ss_pred HHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCc
Q 002834 630 ALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGL 706 (875)
Q Consensus 630 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~ 706 (875)
++...+...|++++|.++|+-+.. .+..-|..|..++-..|++++|+..|....... +-|...+-.+..++...|+
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCC
Confidence 344444556666666666654432 234455556666666666666666666665532 2234445555556666666
Q ss_pred HHHHHHHHHHhHH
Q 002834 707 VDEGLEIFRSIEK 719 (875)
Q Consensus 707 ~~~a~~~~~~~~~ 719 (875)
.+.|.+.|+....
T Consensus 119 ~~~A~~aF~~Ai~ 131 (157)
T PRK15363 119 VCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665555
No 191
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.05 E-value=0.049 Score=53.11 Aligned_cols=56 Identities=9% Similarity=-0.010 Sum_probs=47.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHhcccCCCCc---cHHHHHHHHHhcCCchhHHHHHHHHH
Q 002834 765 LLGACRIHHEVELGRVVANRLFEMEADNIG---NYVVMSNLYAADARWDGVVEIRKLMK 820 (875)
Q Consensus 765 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~ 820 (875)
....|.+.|++..|..-++.+++.-|+.+. +...+...|...|..++|.++.+.+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 345577889999999999999999988654 67788899999999999999887764
No 192
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.068 Score=53.60 Aligned_cols=54 Identities=15% Similarity=0.199 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhcccCCCCcc--------HHHHHHHHHhcCCchhHHHH
Q 002834 762 WGTLLGACRIHHEVELGRVVANRLFEMEADNIGN--------YVVMSNLYAADARWDGVVEI 815 (875)
Q Consensus 762 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~--------~~~l~~~~~~~g~~~~A~~~ 815 (875)
|-.+++.-+...+.+......+.++..-|+-... +--.+..|...++..++.+.
T Consensus 375 ~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~ 436 (486)
T KOG0550|consen 375 WYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRF 436 (486)
T ss_pred HHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhc
Confidence 3344444444444444444555556666653322 33456677777777766664
No 193
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.04 E-value=0.014 Score=49.01 Aligned_cols=93 Identities=14% Similarity=0.110 Sum_probs=68.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCC-ChhHHHHHHHHh
Q 002834 661 AMIGGYAMHGMGKAALKVFSDMLELGVNPD--HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKP-TPEQYASLVDLL 737 (875)
Q Consensus 661 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 737 (875)
.+..++-..|+.++|+.+|++....|.... ...+..+.+++...|++++|..+|++....+.-.+ +......+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 456677889999999999999999886655 33466677788999999999999998877432211 122334455678
Q ss_pred hcCCChHHHHHHHHhC
Q 002834 738 ARGGQISDAYSLVNRM 753 (875)
Q Consensus 738 ~~~g~~~~A~~~~~~~ 753 (875)
...|+.+||++++-..
T Consensus 86 ~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEA 101 (120)
T ss_pred HHCCCHHHHHHHHHHH
Confidence 8899999999877553
No 194
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.01 E-value=0.0038 Score=61.21 Aligned_cols=84 Identities=6% Similarity=-0.104 Sum_probs=42.5
Q ss_pred hcCCChHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCC---ccHHHHHHHHHhcCCc
Q 002834 738 ARGGQISDAYSLVNRMP-VEADC----NVWGTLLGACRIHHEVELGRVVANRLFEMEADNI---GNYVVMSNLYAADARW 809 (875)
Q Consensus 738 ~~~g~~~~A~~~~~~~~-~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~ 809 (875)
.+.|++++|+..|+.+. .-|+. .++..+..++...|+++.|...++++++..|+++ ..+..++.+|...|++
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 34455555555444442 22221 2344444555555566666666666665555532 2344445556666666
Q ss_pred hhHHHHHHHHHh
Q 002834 810 DGVVEIRKLMKT 821 (875)
Q Consensus 810 ~~A~~~~~~~~~ 821 (875)
++|.++++.+.+
T Consensus 234 ~~A~~~~~~vi~ 245 (263)
T PRK10803 234 AKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHH
Confidence 666665555443
No 195
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.95 E-value=0.066 Score=50.12 Aligned_cols=167 Identities=7% Similarity=0.019 Sum_probs=115.8
Q ss_pred HHHHHHhHhcCCHHHHHHHhccCCCC--Ch--------hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHH
Q 002834 629 GALLHLYAKCGSIFSASKIFQCHPQK--DV--------VMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVL 698 (875)
Q Consensus 629 ~~l~~~~~~~g~~~~A~~~~~~~~~~--~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 698 (875)
++|...+.-..-.++-...++.-..| .+ ..-+.++..+.-+|.+.-.+.++++.++...+-+......+.
T Consensus 140 esLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lg 219 (366)
T KOG2796|consen 140 ESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLG 219 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHH
Confidence 44444444444445555555543332 12 234567777777888889999999999976566777778888
Q ss_pred HHHhhcCcHHHHHHHHHHhHHHh----CCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhc
Q 002834 699 SACSHAGLVDEGLEIFRSIEKVQ----GIKPTPEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIH 772 (875)
Q Consensus 699 ~a~~~~g~~~~a~~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~ 772 (875)
+.-.+.||.+.|..+|++..+.. ++.-.......+...|.-++++-+|...+.+++ .+| ++...++-.-+..-.
T Consensus 220 r~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYl 299 (366)
T KOG2796|consen 220 RISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYL 299 (366)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHH
Confidence 88899999999999999776543 233333344455567778889999999999987 334 444555554444556
Q ss_pred CChhHHHHHHHHHhcccCCCCcc
Q 002834 773 HEVELGRVVANRLFEMEADNIGN 795 (875)
Q Consensus 773 ~~~~~a~~~~~~~~~~~p~~~~~ 795 (875)
|+...|++..+++.+..|.....
T Consensus 300 g~l~DAiK~~e~~~~~~P~~~l~ 322 (366)
T KOG2796|consen 300 GKLKDALKQLEAMVQQDPRHYLH 322 (366)
T ss_pred HHHHHHHHHHHHHhccCCccchh
Confidence 89999999999999999875543
No 196
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.93 E-value=0.0019 Score=49.39 Aligned_cols=66 Identities=12% Similarity=0.146 Sum_probs=52.0
Q ss_pred HHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHH
Q 002834 735 DLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMS 800 (875)
Q Consensus 735 ~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 800 (875)
.+|.+.+++++|.+.++.+. ..| ++..|......+...|+++.|.+.++++++..|+++......+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 56778888888888888875 445 4567777778888899999999999999999998877655443
No 197
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.90 E-value=0.11 Score=46.00 Aligned_cols=100 Identities=16% Similarity=0.153 Sum_probs=51.4
Q ss_pred CCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCC--CCccH
Q 002834 722 GIKPTPEQYASLVDLLARGGQISDAYSLVNRMP---VEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEAD--NIGNY 796 (875)
Q Consensus 722 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~ 796 (875)
.+-|+..+-..|...+.+.|+..||...+++.. +-.|+.....+.++...-+++..|...++++.+..|. .|...
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 344555555555555555555555555555542 3344444445555555555555555555555555543 34445
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 797 VVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 797 ~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
..++..|...|++++|..-++...+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHH
Confidence 5555555555555555554444433
No 198
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.86 E-value=0.0034 Score=64.41 Aligned_cols=64 Identities=8% Similarity=-0.129 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCcc---HHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 758 DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGN---YVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 758 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
+...|+++..++...|+++.|+..++++++++|+++.. |..++.+|...|+.++|++.+++..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45778888888888888888888888888888888754 88888888888888888887666554
No 199
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.85 E-value=0.0094 Score=50.08 Aligned_cols=83 Identities=16% Similarity=0.020 Sum_probs=55.2
Q ss_pred HHHHhhcCCChHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCC---CCccHHHHHHHHH
Q 002834 733 LVDLLARGGQISDAYSLVNRMP---VEAD--CNVWGTLLGACRIHHEVELGRVVANRLFEMEAD---NIGNYVVMSNLYA 804 (875)
Q Consensus 733 l~~~~~~~g~~~~A~~~~~~~~---~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~ 804 (875)
+..++-..|+.++|+.++++.. ..+. ...+..+...++..|++++|..++++.++..|+ +......++..+.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 3445556666666666666653 1111 234556667777778888888888888777777 5556666777788
Q ss_pred hcCCchhHHHH
Q 002834 805 ADARWDGVVEI 815 (875)
Q Consensus 805 ~~g~~~~A~~~ 815 (875)
..|++++|++.
T Consensus 87 ~~gr~~eAl~~ 97 (120)
T PF12688_consen 87 NLGRPKEALEW 97 (120)
T ss_pred HCCCHHHHHHH
Confidence 88888888874
No 200
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.81 E-value=0.72 Score=49.67 Aligned_cols=166 Identities=10% Similarity=-0.009 Sum_probs=78.7
Q ss_pred HHHHhcCCChhHHHHHHHhcCCC-----CcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCc
Q 002834 396 VSFYAKCSDMEAAYRTFLMICRR-----DLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLR 470 (875)
Q Consensus 396 i~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 470 (875)
|.++.+.|++-...++++.-... -...|+.+...+.....|++|.+.|..-... ...+.++.+..+
T Consensus 767 ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ecly~le~ 837 (1189)
T KOG2041|consen 767 IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQIECLYRLEL 837 (1189)
T ss_pred HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHHHHHHHHHh
Confidence 44445555555555555432221 1135566666666666666666655442110 112233333333
Q ss_pred hhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcccHHHHHHHhhcCCChHHHHHHHHh
Q 002834 471 EGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFMTFSR 550 (875)
Q Consensus 471 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~ 550 (875)
++..+.+-..+ +.+....-.+.+++.+.|.-++|.+.+-+-... ...+..|...++|.+|.++-+.
T Consensus 838 f~~LE~la~~L--------pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~p------kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 838 FGELEVLARTL--------PEDSELLPVMADMFTSVGMCDQAVEAYLRRSLP------KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred hhhHHHHHHhc--------CcccchHHHHHHHHHhhchHHHHHHHHHhccCc------HHHHHHHHHHHHHHHHHHHHHh
Confidence 33222222211 333444455566666666666665554432221 1233445555566666655555
Q ss_pred hhcCCCcc--------------HHHHHHHHHHcCCchHHHHHHHHHHH
Q 002834 551 IYARDLTP--------------WNLMIRVYAENDFPNQALSLFLKLQA 584 (875)
Q Consensus 551 ~~~~~~~~--------------~~~l~~~~~~~~~~~~A~~~~~~m~~ 584 (875)
..-+.+.+ ...-|..+.+.|++-+|.+++.+|.+
T Consensus 904 ~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 904 FQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred ccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 43333333 11223445667777777777777754
No 201
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.79 E-value=0.0075 Score=48.47 Aligned_cols=78 Identities=12% Similarity=-0.002 Sum_probs=63.4
Q ss_pred HHHHHHhcCCCChhHHHHHHHHhHhcCCC-CCCcchHHHHHHHhhccCC--------cchhhhHHHHHHHhCCCCCcchh
Q 002834 114 ILLSGFACSHVDDARVMNLFYNMHVRDQP-KPNSVTVAIVLSACARLGG--------IFAGKSLHAYVIKFGLERHTLVG 184 (875)
Q Consensus 114 ~li~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~~ll~~~~~~~~--------~~~a~~~~~~~~~~g~~~~~~~~ 184 (875)
..|..+...+ ++.....+|+.+++.| + .|+..+|+.+|.+.+++.- +-....+++.|+..+++|+..+|
T Consensus 30 ~~I~~~~~~~-d~N~I~~lYqslkRN~-i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 30 DNINSCFENE-DYNIINPLYQSLKRNG-ITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHhhc-chHHHHHHHHHHHhcC-CCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 3455555668 9999999999999999 8 8999999999999886542 23455688889999999999999
Q ss_pred hHHHHHhHh
Q 002834 185 NSLTSMYAK 193 (875)
Q Consensus 185 ~~li~~~~~ 193 (875)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999887765
No 202
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.013 Score=58.88 Aligned_cols=95 Identities=12% Similarity=0.006 Sum_probs=79.7
Q ss_pred hhHHHHHHHHhhcCCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHH
Q 002834 727 PEQYASLVDLLARGGQISDAYSLVNRMP--VEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYA 804 (875)
Q Consensus 727 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 804 (875)
..++..+.-++.+.+++.+|++..++.. .++|+..+..-..+|...|+++.|+..++++++++|+|-.+..-|+.+-.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3467778889999999999999999885 44566778788899999999999999999999999999998888888877
Q ss_pred hcCCchhH-HHHHHHHHh
Q 002834 805 ADARWDGV-VEIRKLMKT 821 (875)
Q Consensus 805 ~~g~~~~A-~~~~~~~~~ 821 (875)
+..++++. .++++.|=.
T Consensus 337 k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 77777666 447888743
No 203
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.0087 Score=60.01 Aligned_cols=127 Identities=10% Similarity=0.010 Sum_probs=92.7
Q ss_pred HHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 002834 698 LSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVEL 777 (875)
Q Consensus 698 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 777 (875)
...+.+.|++..|..-|+++...... .+.-..++..... ..-...+.++..+|.+.+++..
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~--------------~~~~~~ee~~~~~-----~~k~~~~lNlA~c~lKl~~~~~ 275 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEY--------------RRSFDEEEQKKAE-----ALKLACHLNLAACYLKLKEYKE 275 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhc--------------cccCCHHHHHHHH-----HHHHHHhhHHHHHHHhhhhHHH
Confidence 55677777777777777776552111 0111112111111 1123456778888889999999
Q ss_pred HHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhCCCcCCCceeEEEeCCEEeEEecCCCCCCChHHHHH
Q 002834 778 GRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTRDLKKPAACSWIEVERKNNAFMAGDYSHPRRDMIYW 857 (875)
Q Consensus 778 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~ 857 (875)
|++...+.++++|+|+.+++.-|.+|...|+++.|...++++.. ..|.+.+|..
T Consensus 276 Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--------------------------~~P~Nka~~~ 329 (397)
T KOG0543|consen 276 AIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK--------------------------LEPSNKAARA 329 (397)
T ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--------------------------hCCCcHHHHH
Confidence 99999999999999999999999999999999999999888765 2477788888
Q ss_pred HHHHHHHHHHhc
Q 002834 858 VLSILDEQIKDQ 869 (875)
Q Consensus 858 ~~~~l~~~~~~~ 869 (875)
.|..|.+++++.
T Consensus 330 el~~l~~k~~~~ 341 (397)
T KOG0543|consen 330 ELIKLKQKIREY 341 (397)
T ss_pred HHHHHHHHHHHH
Confidence 888888887753
No 204
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.76 E-value=0.018 Score=56.54 Aligned_cols=93 Identities=12% Similarity=0.031 Sum_probs=58.6
Q ss_pred hhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC----CHHHHHHHHHHHHhcCCh
Q 002834 702 SHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEA----DCNVWGTLLGACRIHHEV 775 (875)
Q Consensus 702 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p----~~~~~~~l~~~~~~~~~~ 775 (875)
.+.|++++|...|+.+.+.+.-.+- ...+..++.+|...|++++|...|+.+. .-| .+..|..+..++...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 4456666666666666653211111 1355566677777777777776666662 112 235555566667778888
Q ss_pred hHHHHHHHHHhcccCCCCc
Q 002834 776 ELGRVVANRLFEMEADNIG 794 (875)
Q Consensus 776 ~~a~~~~~~~~~~~p~~~~ 794 (875)
+.|+..++++++..|++..
T Consensus 234 ~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 234 AKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHHHHHHCcCCHH
Confidence 8888888888888887654
No 205
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.75 E-value=0.0089 Score=59.88 Aligned_cols=124 Identities=10% Similarity=0.005 Sum_probs=61.3
Q ss_pred hcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHh-cCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcC
Q 002834 595 MSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAK-CGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHG 670 (875)
Q Consensus 595 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 670 (875)
..++..+-+.+..+.++.+|..+.+.+..+..+|...+.+-.. .++.+.|.++|+.+.+ .+...|...+.-+...+
T Consensus 5 i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~ 84 (280)
T PF05843_consen 5 IQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLN 84 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhC
Confidence 3333444444444444444444432222233344444444333 3344446666665544 44555666666666666
Q ss_pred ChHHHHHHHHHHHHCCCCCCh---hhHHHHHHHHhhcCcHHHHHHHHHHhHH
Q 002834 671 MGKAALKVFSDMLELGVNPDH---VVITAVLSACSHAGLVDEGLEIFRSIEK 719 (875)
Q Consensus 671 ~~~~A~~~~~~m~~~g~~p~~---~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 719 (875)
+.+.|..+|++.... +.++. ..|...+.--.+.|+.+...++.+++.+
T Consensus 85 d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 85 DINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp -HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666653 22222 2566666655666666666666666655
No 206
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.71 E-value=0.021 Score=45.96 Aligned_cols=80 Identities=15% Similarity=0.214 Sum_probs=65.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCChhhHHHHHHHHhhcC--------cHHHHHHHHHHhHHHhCCCCChhH
Q 002834 659 LTAMIGGYAMHGMGKAALKVFSDMLELGV-NPDHVVITAVLSACSHAG--------LVDEGLEIFRSIEKVQGIKPTPEQ 729 (875)
Q Consensus 659 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~a~~~~g--------~~~~a~~~~~~~~~~~~~~p~~~~ 729 (875)
-...|..+...+++...-.+|+.++..|+ -|+..+|+.++.+..+.. ++-+.+.+++.|.. .+++|+.++
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~-~~lKP~~et 106 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILS-NKLKPNDET 106 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHH-hccCCcHHH
Confidence 34456666777999999999999999999 899999999999766532 45567889999987 689999999
Q ss_pred HHHHHHHhhc
Q 002834 730 YASLVDLLAR 739 (875)
Q Consensus 730 ~~~l~~~~~~ 739 (875)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999887754
No 207
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=0.15 Score=47.80 Aligned_cols=161 Identities=12% Similarity=0.045 Sum_probs=93.3
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHh-----cCC-CchHHHHHHHH
Q 002834 561 LMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRA-----CFD-GVRLNGALLHL 634 (875)
Q Consensus 561 ~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~-----~~~-~~~~~~~l~~~ 634 (875)
.++.++...|.+.-.+.++++..+...+.++.-...+.+.--..|+.+.+...++.+.+. +.. ...+.......
T Consensus 182 ~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i 261 (366)
T KOG2796|consen 182 SMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFL 261 (366)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhh
Confidence 344444455555555555555555433334444444444445556666666665544443 222 33344445556
Q ss_pred hHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHH-------HHHH-HHhh
Q 002834 635 YAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVIT-------AVLS-ACSH 703 (875)
Q Consensus 635 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-------~ll~-a~~~ 703 (875)
|.-++++..|...|.+++. .|++.-|.-.-++...|+..+|++.++.|.+. .|...+-+ ++.. +|+.
T Consensus 262 ~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~~nL~tmyEL~Ys~ 339 (366)
T KOG2796|consen 262 HLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVLFNLTTMYELEYSR 339 (366)
T ss_pred eecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHHHHHHHHHHHHhhh
Confidence 6777888888888888775 45667777777777788999999999999884 45444333 2333 4445
Q ss_pred cCcHHHHHHHHHHhHHHhCCCCChh
Q 002834 704 AGLVDEGLEIFRSIEKVQGIKPTPE 728 (875)
Q Consensus 704 ~g~~~~a~~~~~~~~~~~~~~p~~~ 728 (875)
+-+.+.++. .+.. +..||..
T Consensus 340 ~~~~k~~l~---~~ia--~~~~d~f 359 (366)
T KOG2796|consen 340 SMQKKQALL---EAVA--GKEGDSF 359 (366)
T ss_pred hhhHHHHHH---HHHh--ccCCCcc
Confidence 545544433 2222 5666643
No 208
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.60 E-value=0.015 Score=60.48 Aligned_cols=119 Identities=11% Similarity=0.024 Sum_probs=85.5
Q ss_pred CCCCcchHHHHHHHhhccCCcchhhhHHHHHHHh--CCCCCcchhhHHHHHhHhcCChhHHHHHhccCCC----CCeeeH
Q 002834 142 PKPNSVTVAIVLSACARLGGIFAGKSLHAYVIKF--GLERHTLVGNSLTSMYAKRGLVHDAYSVFDSIED----KDVVSW 215 (875)
Q Consensus 142 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~ 215 (875)
.+.+......++..+....+++.+..++-..... ....-..+..++|+.|.+.|..+.++.++..=.. ||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3556667777777777777777777777766655 2333344556888888888888888888766443 788888
Q ss_pred HHHHHHHHcCCCcchHHHHHHHHHhCCCCCChhhHHhHHHHhccC
Q 002834 216 NAVISGLSENKVLGDAFRLFSWMLTEPIKPNYATILNILPICASL 260 (875)
Q Consensus 216 ~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 260 (875)
|.|+..+.+.|++..|.++..+|...+.-.+..|..-.+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888888887777766666666555555444
No 209
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.53 E-value=0.011 Score=54.02 Aligned_cols=106 Identities=16% Similarity=0.181 Sum_probs=79.7
Q ss_pred CCCChhhHHHHHHHhc-----ccCchHHHHHHHHHHHHhcCCCCchhhhHHHHHHHccCCchHHHHhhccCCCCCchhHH
Q 002834 39 VRHNHQLFSAVLKSCT-----SLADILLGKALHGYVTKLGHISCQAVSKALLNLYAKCGVIDDCYKLFGQVDNTDPVTWN 113 (875)
Q Consensus 39 ~~~~~~~~~~ll~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 113 (875)
-..+..+|..+++.+. +.|.++....-+..|.+.|+.-|..+|+.|++.+=+ |.+- ...+|+.
T Consensus 43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~---------- 110 (228)
T PF06239_consen 43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQA---------- 110 (228)
T ss_pred ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHH----------
Confidence 3457788888887775 457788888889999999999999999999998876 3321 2223322
Q ss_pred HHHHHHhcCCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHhhccCC
Q 002834 114 ILLSGFACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSACARLGG 161 (875)
Q Consensus 114 ~li~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~ 161 (875)
+.--|-+ ..+-|++++++|...| +-||..|+..|+..+++.+.
T Consensus 111 -~F~hyp~---Qq~c~i~lL~qME~~g-V~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 111 -EFMHYPR---QQECAIDLLEQMENNG-VMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred -HhccCcH---HHHHHHHHHHHHHHcC-CCCcHHHHHHHHHHhccccH
Confidence 2222222 5567899999999999 99999999999999987654
No 210
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.51 E-value=0.042 Score=57.33 Aligned_cols=119 Identities=12% Similarity=0.075 Sum_probs=83.6
Q ss_pred CCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHh--cCC-CchHHHHHHHHhHhcCCHHHHHHHhccCCC----CChhh
Q 002834 586 GMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRA--CFD-GVRLNGALLHLYAKCGSIFSASKIFQCHPQ----KDVVM 658 (875)
Q Consensus 586 g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~--~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~ 658 (875)
+...+...+-.++..+....+++.+..+....... ... -+.+..+++..|.+.|..+++..++..-.. ||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34556666777777777777777777776665554 333 445556778888888888888887776544 77888
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhc
Q 002834 659 LTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHA 704 (875)
Q Consensus 659 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~ 704 (875)
+|.|+..+.+.|++..|.++...|...+...+..|+..-+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888777776666666666555555543
No 211
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.42 E-value=0.02 Score=56.93 Aligned_cols=128 Identities=9% Similarity=-0.038 Sum_probs=88.3
Q ss_pred chHhcHHHHhhcccchHHHHHHHHHHHHh----cCC--CchHHHHHHHHhHhcCCHHHHHHHhccCCC-------C--Ch
Q 002834 592 VTIMSLLPVCSQMASVHLLRQCHGYVIRA----CFD--GVRLNGALLHLYAKCGSIFSASKIFQCHPQ-------K--DV 656 (875)
Q Consensus 592 ~~~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~--~~ 656 (875)
..|..|-..|.-.|+++.+...|+.-... |-. ....+..+..++.-.|+++.|.+.|..... . ..
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 45666666777778999998888764432 333 455677788888888999999888875332 2 23
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHC----C-CCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHH
Q 002834 657 VMLTAMIGGYAMHGMGKAALKVFSDMLEL----G-VNPDHVVITAVLSACSHAGLVDEGLEIFRSIEK 719 (875)
Q Consensus 657 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g-~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 719 (875)
.+..+|...|.-...+++|+..+.+=..- + .--....+.+|..++...|..++|+.+.+...+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45566778888777888888877653321 1 122345677888888888888888887766544
No 212
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.42 E-value=1.1 Score=48.31 Aligned_cols=125 Identities=15% Similarity=0.143 Sum_probs=67.6
Q ss_pred CCChhHHHHHHHhcCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCCh----hhHHHHHHHhhccCchhhHHHH
Q 002834 402 CSDMEAAYRTFLMICRRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDS----ITILTIIHFCTTVLREGMVKET 477 (875)
Q Consensus 402 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~ 477 (875)
-|++++|++++-++.++|.. |..+.+.|+|-.+.++++. .|-..|. ..|..+-..++....|+.|.++
T Consensus 747 ~g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred hcchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999988887753 5566677887777666543 1211221 2344444445555555555555
Q ss_pred HHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcccHHHHHHHhhcCCChHHHHHHH
Q 002834 478 HGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFMTF 548 (875)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~ 548 (875)
+..--.. ...+.+|.+...+++-+.+-..+++ +......+...+.+.|--++|.+.+
T Consensus 819 Y~~~~~~------------e~~~ecly~le~f~~LE~la~~Lpe--~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 819 YSYCGDT------------ENQIECLYRLELFGELEVLARTLPE--DSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred HHhccch------------HhHHHHHHHHHhhhhHHHHHHhcCc--ccchHHHHHHHHHhhchHHHHHHHH
Confidence 5432211 2344555555555555555555444 3333444555554444444444443
No 213
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.38 E-value=0.033 Score=51.06 Aligned_cols=97 Identities=19% Similarity=0.337 Sum_probs=76.9
Q ss_pred HHHhccC--CCCChhhHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhc-------------
Q 002834 645 SKIFQCH--PQKDVVMLTAMIGGYAMH-----GMGKAALKVFSDMLELGVNPDHVVITAVLSACSHA------------- 704 (875)
Q Consensus 645 ~~~~~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~------------- 704 (875)
...|+.. ..++-.+|..++..|.+. |..+=....+..|.+-|+.-|..+|+.||..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3444444 346777788888877754 66777778889999999999999999999877442
Q ss_pred ---CcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCC
Q 002834 705 ---GLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQ 742 (875)
Q Consensus 705 ---g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 742 (875)
.+-+-|++++++|.. +|+-||.+++..+++++++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 345779999999977 8999999999999999988775
No 214
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.32 E-value=0.29 Score=47.71 Aligned_cols=54 Identities=13% Similarity=0.143 Sum_probs=37.2
Q ss_pred HHHHHhHhcCChhHHHHHhccCCC--CCe----eeHHHHHHHHHcCCCcchHHHHHHHHH
Q 002834 186 SLTSMYAKRGLVHDAYSVFDSIED--KDV----VSWNAVISGLSENKVLGDAFRLFSWML 239 (875)
Q Consensus 186 ~li~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~g~~~~a~~l~~~m~ 239 (875)
.+.+.|.+.|.+..|..-|+.+.+ |+. .....++.+|...|..++|......+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 455667788888888777777664 332 244566778888888888887766553
No 215
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.13 Score=50.00 Aligned_cols=100 Identities=13% Similarity=0.139 Sum_probs=48.7
Q ss_pred HHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcC---ChHHHHHHHHHHHHCCCCCCh
Q 002834 618 IRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHG---MGKAALKVFSDMLELGVNPDH 691 (875)
Q Consensus 618 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~ 691 (875)
...++.+..-|..|...|...|+.+.|...|.+..+ +++..+..+..++.... ...++..+|+++.. ..|+.
T Consensus 149 L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~--~D~~~ 226 (287)
T COG4235 149 LQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA--LDPAN 226 (287)
T ss_pred HHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh--cCCcc
Confidence 334444555555555555555555555555554332 34444444444433221 22445555555555 24444
Q ss_pred hhHHHHHH-HHhhcCcHHHHHHHHHHhHH
Q 002834 692 VVITAVLS-ACSHAGLVDEGLEIFRSIEK 719 (875)
Q Consensus 692 ~~~~~ll~-a~~~~g~~~~a~~~~~~~~~ 719 (875)
++-..++. .+...|++.+|...|+.|.+
T Consensus 227 iral~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 227 IRALSLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 33333332 55555555555555555544
No 216
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.18 E-value=0.054 Score=48.34 Aligned_cols=106 Identities=11% Similarity=0.105 Sum_probs=70.3
Q ss_pred HhhcCcHHHHHHHHHHhHHHhCCCC--ChhHHHHHHHHhhcCCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 002834 701 CSHAGLVDEGLEIFRSIEKVQGIKP--TPEQYASLVDLLARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELG 778 (875)
Q Consensus 701 ~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 778 (875)
....|+.+.+.+.++++...+.-.+ +... ..-.......+++. -..+...++..+...|+++.|
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~----~~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLREL----YLDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHH----HHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHH----HHHHHHHHHHHHHhccCHHHH
Confidence 3556788888888887766443222 1111 11112222223322 123455667778889999999
Q ss_pred HHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHH
Q 002834 779 RVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMK 820 (875)
Q Consensus 779 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 820 (875)
...+++++..+|-+...|..+..+|...|+..+|+++++.++
T Consensus 82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999877764
No 217
>PRK11906 transcriptional regulator; Provisional
Probab=96.17 E-value=0.22 Score=51.79 Aligned_cols=143 Identities=10% Similarity=0.078 Sum_probs=95.0
Q ss_pred hHHHHHHHHHHHH-CCCCCChhh-HHHHHHHHh---------hcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhc
Q 002834 672 GKAALKVFSDMLE-LGVNPDHVV-ITAVLSACS---------HAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLAR 739 (875)
Q Consensus 672 ~~~A~~~~~~m~~-~g~~p~~~~-~~~ll~a~~---------~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 739 (875)
.+.|+.+|.+... ..+.|+... |..+..++. ......+|.++-++..+ +.|+ ......++.++.-
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve---ld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD---ITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHh
Confidence 4678888888872 235666433 222222211 13345566677666655 4443 4466667777777
Q ss_pred CCChHHHHHHHHhCC-CCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHH-HHhcCCchhHHHHH
Q 002834 740 GGQISDAYSLVNRMP-VEADC-NVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNL-YAADARWDGVVEIR 816 (875)
Q Consensus 740 ~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~~A~~~~ 816 (875)
.|+++.|..++++.. ..||. .+|......+.-.|+.+.|.+..+++++++|....+-++--++ .+-....++|++++
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLY 430 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHH
Confidence 788889998888885 67765 6677777777788999999999999999999877665554455 44455677788765
Q ss_pred H
Q 002834 817 K 817 (875)
Q Consensus 817 ~ 817 (875)
-
T Consensus 431 ~ 431 (458)
T PRK11906 431 Y 431 (458)
T ss_pred h
Confidence 3
No 218
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.09 E-value=2.1 Score=44.14 Aligned_cols=189 Identities=10% Similarity=0.056 Sum_probs=108.3
Q ss_pred HHHHHHHHhHhcCCHHHHHHHhccCC--CCChh-------hHHHHHHHHH----HcCChHHHHHHHHHHHHCCCCCChhh
Q 002834 627 LNGALLHLYAKCGSIFSASKIFQCHP--QKDVV-------MLTAMIGGYA----MHGMGKAALKVFSDMLELGVNPDHVV 693 (875)
Q Consensus 627 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~-------~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~~ 693 (875)
.+..++....+.++...|.+.+.-+. .|+.. +-.++-+..+ ..-+..+-+.+|+......+.-....
T Consensus 300 ~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLv 379 (549)
T PF07079_consen 300 RFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLV 379 (549)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHH
Confidence 33445555566677777766655332 23221 1111222222 12233445566666665432222111
Q ss_pred HHH--HHHHHhhcCc-HHHHHHHHHHhHHHhCCCCC-hhHHHHHH----HHhhc---CC---ChHHHHHHHHhCCCCC--
Q 002834 694 ITA--VLSACSHAGL-VDEGLEIFRSIEKVQGIKPT-PEQYASLV----DLLAR---GG---QISDAYSLVNRMPVEA-- 757 (875)
Q Consensus 694 ~~~--ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p~-~~~~~~l~----~~~~~---~g---~~~~A~~~~~~~~~~p-- 757 (875)
... -..-+.+.|. -++|+++++.+.+ +.|. ..+-+.+. ..|.. .. ++-.-..++++....|
T Consensus 380 h~L~~~Ak~lW~~g~~dekalnLLk~il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~ 456 (549)
T PF07079_consen 380 HYLVFGAKHLWEIGQCDEKALNLLKLILQ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPIT 456 (549)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCccc
Confidence 111 1224556666 8889999988876 3332 22222211 12211 11 1222334455554333
Q ss_pred --CHHHHHHHHHH--HHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHH
Q 002834 758 --DCNVWGTLLGA--CRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLM 819 (875)
Q Consensus 758 --~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 819 (875)
+...-+.|..| ...+|++.++.-...-+.+..| .+.+|-++|-.+..+.++++|-+.++.+
T Consensus 457 i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 457 ISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred ccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 44556666655 4679999999999999999999 8999999999999999999999998764
No 219
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.17 Score=48.80 Aligned_cols=153 Identities=13% Similarity=0.117 Sum_probs=101.0
Q ss_pred HHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCC
Q 002834 699 SACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMPVEADCNVWGT---LLGACRIHHE 774 (875)
Q Consensus 699 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~~~ 774 (875)
......|+..+|...|+.... ..|+ ...-..|+++|...|+.++|..++..+|.+-....|.. -+.......+
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~---~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQ---AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhccchhhHHHHHHHHHH---hCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 356778999999999998877 3333 45777889999999999999999999985444433433 2222333333
Q ss_pred hhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHH-HHHHHh-CCCcCCC-ceeEEEeCCEEeEEecCCCCCCC
Q 002834 775 VELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEI-RKLMKT-RDLKKPA-ACSWIEVERKNNAFMAGDYSHPR 851 (875)
Q Consensus 775 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~-~~~~~~~-~~s~~~~~~~~~~f~~~~~~~~~ 851 (875)
.... ..+++-+..+|+|...-+.|+..|...|+.++|.+. +..|+. +|..... ....+ -.|-.=+..||.
T Consensus 219 ~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~ll------e~f~~~g~~Dp~ 291 (304)
T COG3118 219 TPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLL------ELFEAFGPADPL 291 (304)
T ss_pred CCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHH------HHHHhcCCCCHH
Confidence 3322 234566678999999999999999999999999994 555543 3322211 11111 234444455676
Q ss_pred hHHHHHHHHH
Q 002834 852 RDMIYWVLSI 861 (875)
Q Consensus 852 ~~~~~~~~~~ 861 (875)
.....++|..
T Consensus 292 ~~~~RRkL~s 301 (304)
T COG3118 292 VLAYRRKLYS 301 (304)
T ss_pred HHHHHHHHHH
Confidence 6666666654
No 220
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.08 E-value=0.15 Score=48.28 Aligned_cols=50 Identities=6% Similarity=-0.065 Sum_probs=38.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHhcccCCCCc---cHHHHHHHHHhcCCchhHHH
Q 002834 765 LLGACRIHHEVELGRVVANRLFEMEADNIG---NYVVMSNLYAADARWDGVVE 814 (875)
Q Consensus 765 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~ 814 (875)
....|.+.|++..|..-++.+++..|+.+. ....++..|.+.|..+.|..
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 345577889999999999999999998754 56778889999998885544
No 221
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.05 E-value=3.1 Score=45.79 Aligned_cols=103 Identities=15% Similarity=0.061 Sum_probs=68.6
Q ss_pred HHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHH
Q 002834 633 HLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLE 712 (875)
Q Consensus 633 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~ 712 (875)
.-+..-|+..+|.++-.+..-||-..|---+.+++..++|++-+++-+.+. + +.-|.-...+|.+.|+.++|.+
T Consensus 692 ~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk-----s-PIGy~PFVe~c~~~~n~~EA~K 765 (829)
T KOG2280|consen 692 TTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK-----S-PIGYLPFVEACLKQGNKDEAKK 765 (829)
T ss_pred HHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC-----C-CCCchhHHHHHHhcccHHHHhh
Confidence 334556777778887777777777777777777887777777655554432 1 4455557777888888888877
Q ss_pred HHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHH
Q 002834 713 IFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVN 751 (875)
Q Consensus 713 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 751 (875)
++-+... +.-.+.+|.+.|++.+|.++--
T Consensus 766 Yiprv~~----------l~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 766 YIPRVGG----------LQEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred hhhccCC----------hHHHHHHHHHhccHHHHHHHHH
Confidence 7754411 1145677777777777776543
No 222
>PRK11906 transcriptional regulator; Provisional
Probab=95.96 E-value=0.065 Score=55.47 Aligned_cols=113 Identities=9% Similarity=0.088 Sum_probs=86.6
Q ss_pred cHHHHHHHHHHhHHHhCCCCChh-HHHHHHHHhhc---------CCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcC
Q 002834 706 LVDEGLEIFRSIEKVQGIKPTPE-QYASLVDLLAR---------GGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHH 773 (875)
Q Consensus 706 ~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~---------~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~ 773 (875)
..+.|+.+|.++.....+.|+-. .|..+..++.. .....+|.++.++.. ..| |+.+...+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 46788899999984445888743 66666555432 223455666666653 444 6677777777777788
Q ss_pred ChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHH
Q 002834 774 EVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKL 818 (875)
Q Consensus 774 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 818 (875)
+++.|...+++++.++|+.+..|...|++.+-.|+.++|.+..++
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 899999999999999999999999999999999999999997665
No 223
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.96 E-value=0.48 Score=49.34 Aligned_cols=101 Identities=13% Similarity=0.097 Sum_probs=62.8
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC--CCCCHHH--HHHHHHHHH
Q 002834 695 TAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP--VEADCNV--WGTLLGACR 770 (875)
Q Consensus 695 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~--~~~l~~~~~ 770 (875)
..+..++.+.|+.++|.+.|++|.+++...-.......|+++|...+++.++..++.+-. .-|.+.+ |..-+-..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 445556677788888888888887643222223356667788888888888888877764 2344433 333332222
Q ss_pred hcCC---------------hhHHHHHHHHHhcccCCCCcc
Q 002834 771 IHHE---------------VELGRVVANRLFEMEADNIGN 795 (875)
Q Consensus 771 ~~~~---------------~~~a~~~~~~~~~~~p~~~~~ 795 (875)
.-++ -..|.++..++++.+|.-|..
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 2222 134678899999999876543
No 224
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.92 E-value=0.52 Score=44.73 Aligned_cols=144 Identities=11% Similarity=0.056 Sum_probs=77.5
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChh-HHHHH
Q 002834 657 VMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPD--HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPE-QYASL 733 (875)
Q Consensus 657 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l 733 (875)
..+-.....+...|++.+|++.|+++...-.... ......+..++.+.|+++.|...+++..+.+.-.|... .+-.+
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~ 85 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYML 85 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHH
Confidence 3344455666777888888888888876421111 22344556677778888888888888777555444432 22222
Q ss_pred HHHhhcCCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCcc-----------------H
Q 002834 734 VDLLARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGN-----------------Y 796 (875)
Q Consensus 734 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----------------~ 796 (875)
+.++... ..... ......+....|...++.+++..|+++-. -
T Consensus 86 g~~~~~~--~~~~~-------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e 144 (203)
T PF13525_consen 86 GLSYYKQ--IPGIL-------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHE 144 (203)
T ss_dssp HHHHHHH--HHHHH--------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh--Cccch-------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHH
Confidence 2221111 00000 00112233455666666666666665432 2
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 797 VVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 797 ~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
...+..|.+.|+|..|..-++.+.+
T Consensus 145 ~~ia~~Y~~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 145 LYIARFYYKRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3467889999999999998777765
No 225
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.85 E-value=2.7 Score=43.39 Aligned_cols=200 Identities=14% Similarity=0.118 Sum_probs=113.1
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHh-------cHHHHhh-ccc---chHHHHHHHHHHHHhcCCCchH
Q 002834 559 WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIM-------SLLPVCS-QMA---SVHLLRQCHGYVIRACFDGVRL 627 (875)
Q Consensus 559 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~-------~ll~a~~-~~~---~~~~a~~~~~~~~~~~~~~~~~ 627 (875)
+..++...++.++...|-..+.-+.-. .|+...-. .+-+..+ ... ++..-..++..+.....+...+
T Consensus 301 F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQL 378 (549)
T PF07079_consen 301 FGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQL 378 (549)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHH
Confidence 555666666777777666666555432 33322111 1111111 111 1222233344444444443333
Q ss_pred HHHHH---HHhHhcCC-HHHHHHHhccCCC---CChhhHHHHH----HHHHH---cCChHHHHHHHHHHHHCCCCCChh-
Q 002834 628 NGALL---HLYAKCGS-IFSASKIFQCHPQ---KDVVMLTAMI----GGYAM---HGMGKAALKVFSDMLELGVNPDHV- 692 (875)
Q Consensus 628 ~~~l~---~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li----~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~- 692 (875)
..-|+ .-+-+.|. -++|..++..+.+ -|..+-|... ..|.+ .....+-+.+-+-..+.|+.|-.+
T Consensus 379 vh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~ 458 (549)
T PF07079_consen 379 VHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITIS 458 (549)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCccccc
Confidence 33332 33445565 6778888876654 4554444322 22322 224455555666666778887543
Q ss_pred ---hHHHHHH--HHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCCCCCCHHHHHHH
Q 002834 693 ---VITAVLS--ACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMPVEADCNVWGTL 765 (875)
Q Consensus 693 ---~~~~ll~--a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 765 (875)
.-+.+.. -+...|++.++.-+-.-..+ +.|++.+|..++-++....+++||..++.++| |+..+|++-
T Consensus 459 e~eian~LaDAEyLysqgey~kc~~ys~WL~~---iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~dsk 531 (549)
T PF07079_consen 459 EEEIANFLADAEYLYSQGEYHKCYLYSSWLTK---IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDSK 531 (549)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH---hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHHH
Confidence 2333433 34568999998776555544 89999999999999999999999999999985 566665543
No 226
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.84 E-value=0.011 Score=45.94 Aligned_cols=59 Identities=10% Similarity=0.125 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccc----CC---CCccHHHHHHHHHhcCCchhHHHHHHHH
Q 002834 761 VWGTLLGACRIHHEVELGRVVANRLFEME----AD---NIGNYVVMSNLYAADARWDGVVEIRKLM 819 (875)
Q Consensus 761 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 819 (875)
++..+...+...|+++.|+..+++++++. ++ -+..+..+|.+|...|++++|++.+++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44555555555666666666666655431 11 2345677888888888888888876553
No 227
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.83 E-value=0.056 Score=44.54 Aligned_cols=88 Identities=17% Similarity=0.144 Sum_probs=52.8
Q ss_pred HhhcCCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCC-C---ccHHHHHHHHHhcCCc
Q 002834 736 LLARGGQISDAYSLVNRMP--VEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADN-I---GNYVVMSNLYAADARW 809 (875)
Q Consensus 736 ~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-~---~~~~~l~~~~~~~g~~ 809 (875)
++...|+++.|++.|.+.. .+.++..|++-..+++.+|+.+.|..-+.+++++.-+. - ..|+.-+.+|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 3455666666666665553 22345666666666666677777766666666664222 1 2456666677777777
Q ss_pred hhHHHHHHHHHhCC
Q 002834 810 DGVVEIRKLMKTRD 823 (875)
Q Consensus 810 ~~A~~~~~~~~~~~ 823 (875)
+.|..=|......|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 77776666555544
No 228
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.82 E-value=2.7 Score=43.18 Aligned_cols=126 Identities=13% Similarity=0.092 Sum_probs=76.4
Q ss_pred chHhcHHHHhhcccchHHHHHHHHHHHHhcCC--CchHHHHHHHHhHhcCCHHHHHHHhccCCC--CChhhH-HHHHHHH
Q 002834 592 VTIMSLLPVCSQMASVHLLRQCHGYVIRACFD--GVRLNGALLHLYAKCGSIFSASKIFQCHPQ--KDVVML-TAMIGGY 666 (875)
Q Consensus 592 ~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~-~~li~~~ 666 (875)
..|...+.+..+..-++.|+.+|..+.+.+.. ++.++++++..|+ .|+...|..+|+.... +|...| +-.+.-+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 34555566666666666666666666666643 5666666666554 4666677777775443 454443 3344555
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHhhcCcHHHHHHHHHHhHH
Q 002834 667 AMHGMGKAALKVFSDMLELGVNPD--HVVITAVLSACSHAGLVDEGLEIFRSIEK 719 (875)
Q Consensus 667 ~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 719 (875)
..-++-+.|..+|+..... +.-+ ...|..++.--+.-|+...+..+=+++.+
T Consensus 477 i~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 477 IRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 6667777777777754442 2223 34566677766777777777776666655
No 229
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.72 E-value=2.2 Score=41.57 Aligned_cols=193 Identities=18% Similarity=0.148 Sum_probs=131.5
Q ss_pred chHHHHHHHHhHhcCCHHHHHHHhccCC-----CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 002834 625 VRLNGALLHLYAKCGSIFSASKIFQCHP-----QKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLS 699 (875)
Q Consensus 625 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 699 (875)
..........+...+.+..+...+.... ......+......+...++...++..+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 3455566666777777777777776643 23445566666777777788888888888877433331 22222222
Q ss_pred -HHhhcCcHHHHHHHHHHhHHHhCCCC----ChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCC--HHHHHHHHHHHHh
Q 002834 700 -ACSHAGLVDEGLEIFRSIEKVQGIKP----TPEQYASLVDLLARGGQISDAYSLVNRMP-VEAD--CNVWGTLLGACRI 771 (875)
Q Consensus 700 -a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~--~~~~~~l~~~~~~ 771 (875)
++...|+++.|...+++... ..| ....+......+...++.++|...+.... ..++ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 67788888888888888743 333 22344444455667788888888887774 3333 5667777777888
Q ss_pred cCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 772 HHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 772 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
.++.+.|...+.++++..|.....+..++..+...|+++++...+.....
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88889999999999988888666677777777777778888886665543
No 230
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.70 E-value=0.16 Score=43.54 Aligned_cols=76 Identities=11% Similarity=0.052 Sum_probs=53.2
Q ss_pred HHHHhhcCCChHHHHHHHHhCC----CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCcc---HHHHHHHHH
Q 002834 733 LVDLLARGGQISDAYSLVNRMP----VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGN---YVVMSNLYA 804 (875)
Q Consensus 733 l~~~~~~~g~~~~A~~~~~~~~----~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~ 804 (875)
-+....+.|++++|.+.++.+. ..| ...+-..|+.++.+.++++.|...+++.+++.|.++.+ +...|-.+.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 3445567788888888887773 222 22445567788889999999999999999999988763 444455555
Q ss_pred hcCC
Q 002834 805 ADAR 808 (875)
Q Consensus 805 ~~g~ 808 (875)
.+..
T Consensus 96 ~~~~ 99 (142)
T PF13512_consen 96 EQDE 99 (142)
T ss_pred HHhh
Confidence 5544
No 231
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.65 E-value=0.036 Score=42.88 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=12.7
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHhHH
Q 002834 694 ITAVLSACSHAGLVDEGLEIFRSIEK 719 (875)
Q Consensus 694 ~~~ll~a~~~~g~~~~a~~~~~~~~~ 719 (875)
++.+...|...|++++|+++|++..+
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~al~ 33 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKALD 33 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444455555555555555555443
No 232
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.54 E-value=0.5 Score=39.41 Aligned_cols=141 Identities=17% Similarity=0.115 Sum_probs=85.1
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHH
Q 002834 666 YAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISD 745 (875)
Q Consensus 666 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 745 (875)
+...|..++..++..+...+ .+..-++.++.-....-+-+-..+.++.+-+-+.+.|- ...-.++.+|.+.|...|
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C-~NlKrVi~C~~~~n~~se 87 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKC-GNLKRVIECYAKRNKLSE 87 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT---H
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhh-cchHHHHHHHHHhcchHH
Confidence 44578888999999888763 23344444554444444555566666666443322221 134456667776666443
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhCCCc
Q 002834 746 AYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTRDLK 825 (875)
Q Consensus 746 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 825 (875)
....-+.+...+|.-+.-.+++..+++.+..+|...+.++++|.+.|+..+|.++++..=++|++
T Consensus 88 ---------------~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 88 ---------------YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp ---------------HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred ---------------HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 23334566678888888889999888777778889999999999999999999999888888865
No 233
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.45 E-value=0.033 Score=34.58 Aligned_cols=33 Identities=18% Similarity=0.164 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhcccCCC
Q 002834 760 NVWGTLLGACRIHHEVELGRVVANRLFEMEADN 792 (875)
Q Consensus 760 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 792 (875)
..|..+..++...|+++.|++.++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456777778888888888888888888888875
No 234
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.45 E-value=0.024 Score=35.25 Aligned_cols=33 Identities=21% Similarity=0.151 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhcccCCC
Q 002834 760 NVWGTLLGACRIHHEVELGRVVANRLFEMEADN 792 (875)
Q Consensus 760 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 792 (875)
.+|..+..++...|+++.|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 467788888888999999999999999998864
No 235
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.20 E-value=1.9 Score=49.98 Aligned_cols=157 Identities=18% Similarity=0.257 Sum_probs=88.9
Q ss_pred CChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHH
Q 002834 539 GSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVI 618 (875)
Q Consensus 539 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~ 618 (875)
++++.|+.-+.++. ...|.-..+.--++|.+.+|+.++ +|+...+..+..+|+.. +.
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~h------------L~ 950 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADH------------LR 950 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHH------------HH
Confidence 45555555554433 333444444445666666666664 56666665555444331 11
Q ss_pred HhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhh--HHH
Q 002834 619 RACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVV--ITA 696 (875)
Q Consensus 619 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~ 696 (875)
+. ..+.--.-+|.++|+.++|++ +|...|+|.+|+.+..++.. .-|... -..
T Consensus 951 ~~-----~~~~~Aal~Ye~~GklekAl~------------------a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~ 1004 (1265)
T KOG1920|consen 951 EE-----LMSDEAALMYERCGKLEKALK------------------AYKECGDWREALSLAAQLSE---GKDELVILAEE 1004 (1265)
T ss_pred Hh-----ccccHHHHHHHHhccHHHHHH------------------HHHHhccHHHHHHHHHhhcC---CHHHHHHHHHH
Confidence 11 111222346888888888855 45557788888888877642 112211 144
Q ss_pred HHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhC
Q 002834 697 VLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRM 753 (875)
Q Consensus 697 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 753 (875)
|..-+..+++.-+|-++..+... .| ..-+..|+++..|++|..+....
T Consensus 1005 L~s~L~e~~kh~eAa~il~e~~s----d~-----~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1005 LVSRLVEQRKHYEAAKILLEYLS----DP-----EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHcccchhHHHHHHHHhc----CH-----HHHHHHHhhHhHHHHHHHHHHhc
Confidence 56667777777777777765543 22 22345567777788887776654
No 236
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.12 E-value=0.27 Score=41.89 Aligned_cols=48 Identities=15% Similarity=0.219 Sum_probs=27.4
Q ss_pred CCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHH
Q 002834 687 VNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLV 734 (875)
Q Consensus 687 ~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 734 (875)
..|+..+..+++.+|+..|++..|+++++...+.++++-+...|..|+
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll 95 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLL 95 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 445555666666666666666666666666655555554444444444
No 237
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.10 E-value=0.22 Score=44.30 Aligned_cols=72 Identities=22% Similarity=0.335 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHH----HhCCCCChhHH
Q 002834 658 MLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEK----VQGIKPTPEQY 730 (875)
Q Consensus 658 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~ 730 (875)
+...++..+...|++++|+.+++++.... +-|...+..++.++...|+..+|.+.|+++.+ ..|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 35556777788999999999999998852 55677888899999999999999999987753 36888887654
No 238
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.04 E-value=7.1 Score=43.16 Aligned_cols=352 Identities=9% Similarity=0.025 Sum_probs=189.8
Q ss_pred HhccCChhHHHHHHHHH--------HHCCCCCChhhHH-----HHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHH
Q 002834 430 FSESGYNSQFLNLLNCM--------LMEGIRPDSITIL-----TIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIG 496 (875)
Q Consensus 430 ~~~~g~~~~a~~~~~~m--------~~~g~~p~~~t~~-----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 496 (875)
+.+..++++-..+.++. ..-|+..+..-|. .+|.-+...+.+..|.++-..+..... .. ..++
T Consensus 399 ~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~---~~-~~Vl 474 (829)
T KOG2280|consen 399 SLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPES---QG-DRVL 474 (829)
T ss_pred ccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccc---cc-cHHH
Confidence 44445555555444443 2345555544443 334444555666666666555432211 11 4566
Q ss_pred HHHHHHHHhcCC---HHHHHHHHHhhccC-CCcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCc--------cHHHHHH
Q 002834 497 NAILDAYAKCRN---IKYAFNVFQSLLEK-RNLVTFNPVISGYANCGSADEAFMTFSRIYARDLT--------PWNLMIR 564 (875)
Q Consensus 497 ~~li~~~~~~g~---~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~l~~ 564 (875)
.....-+.+..+ -+-+..+-+++..+ -..++|..+..-....|+.+.|..+++.=...... -+..-+.
T Consensus 475 ~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~ 554 (829)
T KOG2280|consen 475 LEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALK 554 (829)
T ss_pred HHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHH
Confidence 666666655532 22233333333331 25567777777777888888888887654332211 1555555
Q ss_pred HHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHH
Q 002834 565 VYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSA 644 (875)
Q Consensus 565 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 644 (875)
-..+.|+.+-...++..|... .+...|...+ .+...|..++....+..-. ..+-+.|- .++...+
T Consensus 555 kaies~d~~Li~~Vllhlk~~---~~~s~l~~~l------~~~p~a~~lY~~~~r~~~~-----~~l~d~y~-q~dn~~~ 619 (829)
T KOG2280|consen 555 KAIESGDTDLIIQVLLHLKNK---LNRSSLFMTL------RNQPLALSLYRQFMRHQDR-----ATLYDFYN-QDDNHQA 619 (829)
T ss_pred HHHhcCCchhHHHHHHHHHHH---HHHHHHHHHH------HhchhhhHHHHHHHHhhch-----hhhhhhhh-cccchhh
Confidence 557777777777766665542 1111111111 1122233333333332110 01111111 1222222
Q ss_pred HHHhc--cC-----CCCChhhHHHHHHHHHHcCC----------hHHHHHHHHHHHH-CCCCCChhhHHHHHHHHhhcCc
Q 002834 645 SKIFQ--CH-----PQKDVVMLTAMIGGYAMHGM----------GKAALKVFSDMLE-LGVNPDHVVITAVLSACSHAGL 706 (875)
Q Consensus 645 ~~~~~--~~-----~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~-~g~~p~~~~~~~ll~a~~~~g~ 706 (875)
...|. .. .++-..........+++... ..+-+.+.+.+.. .|..-...+.+-.+.-+...|+
T Consensus 620 ~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~ 699 (829)
T KOG2280|consen 620 LASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQ 699 (829)
T ss_pred hhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccc
Confidence 21111 10 01111223333444444332 1122222333322 2334455566777778888999
Q ss_pred HHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 002834 707 VDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLF 786 (875)
Q Consensus 707 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 786 (875)
..+|.++-.+. . -||-..|..-+.++...++|++-+++-++.. .+..|.-+..+|.+.||.++|.+.+-+.-
T Consensus 700 ~k~a~ql~~~F----k-ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 700 NKRAEQLKSDF----K-IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred hHHHHHHHHhc----C-CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 99998876555 2 3788888888899999999999999988874 25667778899999999999988876653
Q ss_pred cccCCCCccHHHHHHHHHhcCCchhHHHHH
Q 002834 787 EMEADNIGNYVVMSNLYAADARWDGVVEIR 816 (875)
Q Consensus 787 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 816 (875)
.+ .-...+|.+.|++.+|.++-
T Consensus 772 ~l--------~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 772 GL--------QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred Ch--------HHHHHHHHHhccHHHHHHHH
Confidence 32 14667889999999999864
No 239
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.99 E-value=0.61 Score=40.18 Aligned_cols=117 Identities=11% Similarity=-0.000 Sum_probs=62.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHH
Q 002834 660 TAMIGGYAMHGMGKAALKVFSDMLELGVNPD---HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDL 736 (875)
Q Consensus 660 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 736 (875)
-.-.....+.|++++|++.|+.+... .+.. ...-..++.++.+.|++++|...+++..+.+.-.|++ .|.....+
T Consensus 14 y~~a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~g 91 (142)
T PF13512_consen 14 YQEAQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRG 91 (142)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHH
Confidence 33344455667777777777777764 2222 2334556667777777777777777777643333332 33333333
Q ss_pred hhcCCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCC
Q 002834 737 LARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNI 793 (875)
Q Consensus 737 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 793 (875)
+..-...+ ..+..+. ..=+-.+....|...++++++.-|++.
T Consensus 92 L~~~~~~~---~~~~~~~------------~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 92 LSYYEQDE---GSLQSFF------------RSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHhh---hHHhhhc------------ccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 32211111 1111111 000112235677888888888888765
No 240
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.97 E-value=3.9 Score=39.80 Aligned_cols=174 Identities=16% Similarity=0.105 Sum_probs=120.7
Q ss_pred CchHHHHHHHHhHhcCCHHHHHHHhccCCC--CCh-hhHHHHHH-HHHHcCChHHHHHHHHHHHHCCCCC----ChhhHH
Q 002834 624 GVRLNGALLHLYAKCGSIFSASKIFQCHPQ--KDV-VMLTAMIG-GYAMHGMGKAALKVFSDMLELGVNP----DHVVIT 695 (875)
Q Consensus 624 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~ 695 (875)
....+......+...+++..+.+.+..... ++. ........ .+...|+++.|...+++... ..| ....+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~ 171 (291)
T COG0457 94 LAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALL 171 (291)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHH
Confidence 344445555666667777778777776554 221 22333333 68899999999999999865 333 233344
Q ss_pred HHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC--hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHh
Q 002834 696 AVLSACSHAGLVDEGLEIFRSIEKVQGIKPT--PEQYASLVDLLARGGQISDAYSLVNRMP-VEAD-CNVWGTLLGACRI 771 (875)
Q Consensus 696 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~ 771 (875)
.....+...++.+.+...+.+... ..|+ ...+..+...+...+.+++|...+.... ..|+ ...+..+...+..
T Consensus 172 ~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (291)
T COG0457 172 ALGALLEALGRYEEALELLEKALK---LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLE 248 (291)
T ss_pred HhhhHHHHhcCHHHHHHHHHHHHh---hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHH
Confidence 444456778899999999999876 3344 5678888889999999999999988875 4454 4556666666666
Q ss_pred cCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhc
Q 002834 772 HHEVELGRVVANRLFEMEADNIGNYVVMSNLYAAD 806 (875)
Q Consensus 772 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 806 (875)
.++.+.+...+.+.++..|. +..+++.+...
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 279 (291)
T COG0457 249 LGRYEEALEALEKALELDPD----LYNLGLALLLL 279 (291)
T ss_pred cCCHHHHHHHHHHHHHhCcc----hhhhhHHHHHH
Confidence 67899999999999999997 44444444433
No 241
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=94.81 E-value=1.3 Score=48.16 Aligned_cols=101 Identities=20% Similarity=0.295 Sum_probs=64.8
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChhh---HHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCC
Q 002834 666 YAMHGMGKAALKVFSDMLELGVNPDHVV---ITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQ 742 (875)
Q Consensus 666 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 742 (875)
|...+..+.|+++|++..+ +.|+..+ +..|+.+-.+ .++...++- .+ | ..|-..++|.|.
T Consensus 297 ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~--~Fens~Elq-~I----g--------mkLn~LlgrKG~ 359 (1226)
T KOG4279|consen 297 YTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGE--HFENSLELQ-QI----G--------MKLNSLLGRKGA 359 (1226)
T ss_pred CcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhh--hccchHHHH-HH----H--------HHHHHHhhccch
Confidence 4445566788889988877 5777654 4444443222 222222211 11 1 124456788898
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCC
Q 002834 743 ISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNI 793 (875)
Q Consensus 743 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 793 (875)
++.-.++++- .+++++....+|+.+|++++++++++.|..-
T Consensus 360 leklq~YWdV----------~~y~~asVLAnd~~kaiqAae~mfKLk~P~W 400 (1226)
T KOG4279|consen 360 LEKLQEYWDV----------ATYFEASVLANDYQKAIQAAEMMFKLKPPVW 400 (1226)
T ss_pred HHHHHHHHhH----------HHhhhhhhhccCHHHHHHHHHHHhccCCcee
Confidence 8887776664 3667777788999999999999999988653
No 242
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.76 E-value=4 Score=39.04 Aligned_cols=162 Identities=15% Similarity=0.019 Sum_probs=102.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChh-HHHHHH
Q 002834 659 LTAMIGGYAMHGMGKAALKVFSDMLELGVNPD---HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPE-QYASLV 734 (875)
Q Consensus 659 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~ 734 (875)
|-.-+..-.+.|++++|.+.|+.+... .+-+ ..+...++-++.+.+++++|+..+++..+.++-.|+.. .+...+
T Consensus 37 LY~~g~~~L~~gn~~~A~~~fe~l~~~-~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylkg 115 (254)
T COG4105 37 LYNEGLTELQKGNYEEAIKYFEALDSR-HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKG 115 (254)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHH
Confidence 333344455778888888888888764 2222 33445555577788888888888888877677777654 222211
Q ss_pred HHhhc-----CCChHHHH-------HHHHhCC---CCCCHHHH------------HHHHHHHHhcCChhHHHHHHHHHhc
Q 002834 735 DLLAR-----GGQISDAY-------SLVNRMP---VEADCNVW------------GTLLGACRIHHEVELGRVVANRLFE 787 (875)
Q Consensus 735 ~~~~~-----~g~~~~A~-------~~~~~~~---~~p~~~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~ 787 (875)
..+.. ..+...+. +++++.| ..||+..- ......|.+.|....|..-++.+++
T Consensus 116 Ls~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e 195 (254)
T COG4105 116 LSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLE 195 (254)
T ss_pred HHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 11111 11222222 2333333 23343211 1334667889999999999999999
Q ss_pred ccCCCCcc---HHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 788 MEADNIGN---YVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 788 ~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
.-|+.+.. +..+..+|...|-.++|.+..+-+..
T Consensus 196 ~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 196 NYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred ccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 98877654 55667889999999999999888765
No 243
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.72 E-value=0.13 Score=53.19 Aligned_cols=60 Identities=10% Similarity=0.013 Sum_probs=27.6
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 002834 729 QYASLVDLLARGGQISDAYSLVNRM-PVEADC----NVWGTLLGACRIHHEVELGRVVANRLFEM 788 (875)
Q Consensus 729 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 788 (875)
.+..++.+|...|++++|+..+++. ...|+. .+|.++..+|...|+.++|+..+++++++
T Consensus 77 a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 77 DAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4444444444444444444444443 233332 12444444444455555555555555544
No 244
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.69 E-value=0.15 Score=48.76 Aligned_cols=99 Identities=17% Similarity=0.112 Sum_probs=47.2
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCC-ChhHHHHHHHHhhcCCChHHHHHHHHhC----CCCCC-HHHHHHHHH
Q 002834 694 ITAVLSACSHAGLVDEGLEIFRSIEKVQGIKP-TPEQYASLVDLLARGGQISDAYSLVNRM----PVEAD-CNVWGTLLG 767 (875)
Q Consensus 694 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~l~~ 767 (875)
|+.-+. +.+.|++..|..-|....+.+.-.+ ....+..|+.++...|++++|...|..+ |..|. +..+.-|.-
T Consensus 145 Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 443333 3455566666666666655331111 1224445556666666666555555444 22221 233333334
Q ss_pred HHHhcCChhHHHHHHHHHhcccCCCC
Q 002834 768 ACRIHHEVELGRVVANRLFEMEADNI 793 (875)
Q Consensus 768 ~~~~~~~~~~a~~~~~~~~~~~p~~~ 793 (875)
+....|+.+.|...++++++-.|+.+
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 44445555555555555555555443
No 245
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.60 E-value=7.3 Score=45.55 Aligned_cols=118 Identities=16% Similarity=0.132 Sum_probs=76.9
Q ss_pred HHHHHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHH
Q 002834 630 ALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDE 709 (875)
Q Consensus 630 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~ 709 (875)
-..+.-.+.|-+.+|..++..-.+.--..|.+...-+.....+++|.-.|+..-+. .--+.+|...|+|.+
T Consensus 913 e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~ 983 (1265)
T KOG1920|consen 913 ECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWRE 983 (1265)
T ss_pred HHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHH
Confidence 33344445666666666665443333345555566666778888888888765331 225778889999999
Q ss_pred HHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCCCCCC
Q 002834 710 GLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMPVEAD 758 (875)
Q Consensus 710 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~ 758 (875)
|+.+-.++.. +-.--..+-..|+..+..+++.-||-++..+....|.
T Consensus 984 ~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~ 1030 (1265)
T KOG1920|consen 984 ALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPE 1030 (1265)
T ss_pred HHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHH
Confidence 9998876633 1111122346788889999999999999888755553
No 246
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.59 E-value=1 Score=48.98 Aligned_cols=128 Identities=13% Similarity=0.081 Sum_probs=78.9
Q ss_pred HHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCChhhHHHHHH-HHhhcCcHHHHHHHHHHhHHHhCCCCC--hhHHH
Q 002834 659 LTAMIGGYAM----HGMGKAALKVFSDMLELGVNPDHVVITAVLS-ACSHAGLVDEGLEIFRSIEKVQGIKPT--PEQYA 731 (875)
Q Consensus 659 ~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~ 731 (875)
|...+..++. ....+.|.++++.+.+. -|+...|...-. .+...|++++|++.|+++.....--|. ...+.
T Consensus 232 y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~ 309 (468)
T PF10300_consen 232 YHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYF 309 (468)
T ss_pred HHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHH
Confidence 4444444433 34567788888888874 677766655544 667788888888888865431111222 22455
Q ss_pred HHHHHhhcCCChHHHHHHHHhCCC-CC-CHHHHHHHHHHHH-hcCCh-------hHHHHHHHHHhcc
Q 002834 732 SLVDLLARGGQISDAYSLVNRMPV-EA-DCNVWGTLLGACR-IHHEV-------ELGRVVANRLFEM 788 (875)
Q Consensus 732 ~l~~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~-~~~~~-------~~a~~~~~~~~~~ 788 (875)
-++.++.-.++|++|.+.+..+.. .. +...|..+.++|. ..++. ++|.+.++++-.+
T Consensus 310 El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 310 ELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 566777888888888888888752 22 3355555555554 35666 5555555555443
No 247
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=94.58 E-value=0.024 Score=47.40 Aligned_cols=24 Identities=54% Similarity=1.194 Sum_probs=20.4
Q ss_pred ceeEEEeCCEEeEEecCCCCCCChHHHH
Q 002834 829 ACSWIEVERKNNAFMAGDYSHPRRDMIY 856 (875)
Q Consensus 829 ~~s~~~~~~~~~~f~~~~~~~~~~~~~~ 856 (875)
|+||+++ |.|++||.+||+...++
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~~~~~ 25 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQSELIN 25 (116)
T ss_pred CCCccce----EEEEeCCCcCccHHHHH
Confidence 7899987 99999999999993333
No 248
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.52 E-value=0.35 Score=43.51 Aligned_cols=121 Identities=9% Similarity=0.023 Sum_probs=68.6
Q ss_pred HhhcCcHHHHHHHHHHhHHHhCCCCC-----hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCCH-HHHHHHHHHHHhcC
Q 002834 701 CSHAGLVDEGLEIFRSIEKVQGIKPT-----PEQYASLVDLLARGGQISDAYSLVNRMP-VEADC-NVWGTLLGACRIHH 773 (875)
Q Consensus 701 ~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~~~~~~ 773 (875)
+.+.|++++|..-|..+... .+|. ...|..-+-++.+.++++.|++-..+.. +.|.. ..+..-.-+|-+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 45566777777666666552 2222 2345555566777777777776666553 44422 23333344566667
Q ss_pred ChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHH--HHHHHHhCC
Q 002834 774 EVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVE--IRKLMKTRD 823 (875)
Q Consensus 774 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~ 823 (875)
.++.|+.-|+++++.+|..-.+--..+.+--...+..++.+ +..++++.|
T Consensus 183 k~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKee~m~kLKdlG 234 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKEEMMEKLKDLG 234 (271)
T ss_pred hHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 78888888888888888766554444444333333333333 344444433
No 249
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.47 E-value=1.5 Score=43.56 Aligned_cols=157 Identities=11% Similarity=0.072 Sum_probs=76.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCh--h-----hHHHHHHHHhhcCcHHHHHHHHHHhHHH---hCCCC
Q 002834 658 MLTAMIGGYAMHGMGKAALKVFSDMLEL--GVNPDH--V-----VITAVLSACSHAGLVDEGLEIFRSIEKV---QGIKP 725 (875)
Q Consensus 658 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~--~-----~~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~~p 725 (875)
.+-.|...|.+..++++|+-...+..+. .+..+. . ....+.-++...|....|.+..++..+. .|-.|
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 4555555666666666665554443321 111111 1 1222333566667776676666665442 23333
Q ss_pred C-hhHHHHHHHHhhcCCChHHHHHHHHhCC-------CCCC-HHHHHHHHHHHHh---c--CChhHHHHHHHHHhcccCC
Q 002834 726 T-PEQYASLVDLLARGGQISDAYSLVNRMP-------VEAD-CNVWGTLLGACRI---H--HEVELGRVVANRLFEMEAD 791 (875)
Q Consensus 726 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~~~l~~~~~~---~--~~~~~a~~~~~~~~~~~p~ 791 (875)
. .....++.++|-..|+.|.|..-|++.- .+.. ..+.......... + +.--.|.+.-++++++...
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~ 323 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASS 323 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHH
Confidence 3 2255667777877777777766665531 1100 0111111111111 1 1112355555555554332
Q ss_pred ----CC--ccHHHHHHHHHhcCCchhHHH
Q 002834 792 ----NI--GNYVVMSNLYAADARWDGVVE 814 (875)
Q Consensus 792 ----~~--~~~~~l~~~~~~~g~~~~A~~ 814 (875)
.. ..+..++.+|..+|.-++-..
T Consensus 324 IG~K~~vlK~hcrla~iYrs~gl~d~~~~ 352 (518)
T KOG1941|consen 324 IGAKLSVLKLHCRLASIYRSKGLQDELRA 352 (518)
T ss_pred hhhhHHHHHHHHHHHHHHHhccchhHHHH
Confidence 21 246678999988887766444
No 250
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.34 E-value=0.18 Score=41.66 Aligned_cols=89 Identities=17% Similarity=0.190 Sum_probs=43.3
Q ss_pred HhhcCcHHHHHHHHHHhHHHhCCCC-ChhHHHHHHHHhhcCCChHHHHHHHHhCC--CCC-C---HHHHHHHHHHHHhcC
Q 002834 701 CSHAGLVDEGLEIFRSIEKVQGIKP-TPEQYASLVDLLARGGQISDAYSLVNRMP--VEA-D---CNVWGTLLGACRIHH 773 (875)
Q Consensus 701 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p-~---~~~~~~l~~~~~~~~ 773 (875)
....|+.+.|++.|.+... +-| ....|+.-..++.-+|+.++|++-+++.. .-| . ...+..-...|+..|
T Consensus 53 laE~g~Ld~AlE~F~qal~---l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALC---LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHhccchHHHHHHHHHHHH---hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 3445555555555555443 222 23345555555555555555555444432 011 1 112222234456667
Q ss_pred ChhHHHHHHHHHhcccCCC
Q 002834 774 EVELGRVVANRLFEMEADN 792 (875)
Q Consensus 774 ~~~~a~~~~~~~~~~~p~~ 792 (875)
+.+.|..-|+.+-++..+.
T Consensus 130 ~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSKF 148 (175)
T ss_pred chHHHHHhHHHHHHhCCHH
Confidence 7777777777666665543
No 251
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.34 E-value=0.98 Score=44.27 Aligned_cols=146 Identities=14% Similarity=0.058 Sum_probs=68.0
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHH----HHHHhhcCCChH
Q 002834 669 HGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYAS----LVDLLARGGQIS 744 (875)
Q Consensus 669 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~----l~~~~~~~g~~~ 744 (875)
+|+..+|-..++++.+. ++.|...+...=.+|...|..+.-...++++.. ...|+...|.. +..++...|-++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 44555555555555553 444445555444555555555555555555533 12344433322 223334555666
Q ss_pred HHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCC----CCccHHHHHHHHHhcCCchhHHHHHH
Q 002834 745 DAYSLVNRMP--VEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEAD----NIGNYVVMSNLYAADARWDGVVEIRK 817 (875)
Q Consensus 745 ~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~ 817 (875)
+|++.-++.. .+.|.-.-.++.......++...+.+..++--..=.+ -...|.+.+-.|.+.+.++.|++++.
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 6665555542 2223333344444445555555555544432111000 11224444445555566666666543
No 252
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.31 E-value=0.44 Score=40.63 Aligned_cols=51 Identities=24% Similarity=0.390 Sum_probs=38.2
Q ss_pred hCCCCChhHHHHHHHHhhcCCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHh
Q 002834 721 QGIKPTPEQYASLVDLLARGGQISDAYSLVNRM----PVEADCNVWGTLLGACRI 771 (875)
Q Consensus 721 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~ 771 (875)
....|+.....+++.+|+..|++..|+++++.. +.+-+..+|..|+.=+..
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 346677888888889998899999998888776 334456888888855543
No 253
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.30 E-value=1.4 Score=38.73 Aligned_cols=63 Identities=21% Similarity=0.385 Sum_probs=28.9
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcC-CChHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 002834 694 ITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARG-GQISDAYSLVNRMPVEADCNVWGTLLGAC 769 (875)
Q Consensus 694 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~p~~~~~~~l~~~~ 769 (875)
...+++.|.+.+.++++.-++.++.. +...++.+... ++.+.|.+++.+. .++..|..++..|
T Consensus 72 ~~~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~~ 135 (140)
T smart00299 72 IEKVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKAL 135 (140)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHHH
Confidence 33455555555555555555544422 11122222222 5555555555542 2344555555444
No 254
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.23 E-value=0.35 Score=46.44 Aligned_cols=94 Identities=15% Similarity=0.095 Sum_probs=67.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCCh-hHHHHHH
Q 002834 659 LTAMIGGYAMHGMGKAALKVFSDMLELGVNPD---HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTP-EQYASLV 734 (875)
Q Consensus 659 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~ 734 (875)
|+.-+. +.+.|++..|...|...++.. +-+ ...+..|..++...|++++|..+|..+.++++-.|.. +.+--|+
T Consensus 145 Y~~A~~-~~ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 145 YNAALD-LYKSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHH-HHHcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 555444 446677888888888888752 211 1234457778888888888888888888877666664 5777888
Q ss_pred HHhhcCCChHHHHHHHHhCC
Q 002834 735 DLLARGGQISDAYSLVNRMP 754 (875)
Q Consensus 735 ~~~~~~g~~~~A~~~~~~~~ 754 (875)
.+..+.|+.++|...+++..
T Consensus 223 ~~~~~l~~~d~A~atl~qv~ 242 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVI 242 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHH
Confidence 88888888888888887774
No 255
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.19 E-value=7.7 Score=40.73 Aligned_cols=151 Identities=10% Similarity=-0.039 Sum_probs=85.7
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---ChhhHHHHHHHHhhcCcHHHHHHHHHHhHHH-hCCCCChhH
Q 002834 654 KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNP---DHVVITAVLSACSHAGLVDEGLEIFRSIEKV-QGIKPTPEQ 729 (875)
Q Consensus 654 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~p~~~~ 729 (875)
....+|..++..+.+.|+++.|...+.++...+..+ +......-.......|+.++|...++..... ..-..+...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 345678888899999999999999999888743222 2333444456677788999999988887662 111111111
Q ss_pred HHHHHHHhhcCCChHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CChhHHHHHHHHHhcccCCCCccHHHHHHH
Q 002834 730 YASLVDLLARGGQISDAYSL-VNRMPVEADCNVWGTLLGACRIH------HEVELGRVVANRLFEMEADNIGNYVVMSNL 802 (875)
Q Consensus 730 ~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 802 (875)
...+...+.. ..+..... ........-..++..+..-+... ++.+.+...++++.++.|.....|..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111100 00000000 00000000012233333333333 788899999999999999998888888887
Q ss_pred HHhc
Q 002834 803 YAAD 806 (875)
Q Consensus 803 ~~~~ 806 (875)
+...
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 6554
No 256
>PRK15331 chaperone protein SicA; Provisional
Probab=94.18 E-value=1.3 Score=39.25 Aligned_cols=91 Identities=7% Similarity=-0.068 Sum_probs=53.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCC
Q 002834 663 IGGYAMHGMGKAALKVFSDMLELGVNPD-HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGG 741 (875)
Q Consensus 663 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 741 (875)
...+-..|++++|..+|.-+.-. .|. ..-|..|..+|-..+.+++|+..|..+.... .-|+..+-..+.+|...|
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~--d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIY--DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--KNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--cCCCCccchHHHHHHHhC
Confidence 33445677777777777777663 332 2334444445555677777777776664411 122333444667777777
Q ss_pred ChHHHHHHHHhCCCCC
Q 002834 742 QISDAYSLVNRMPVEA 757 (875)
Q Consensus 742 ~~~~A~~~~~~~~~~p 757 (875)
+.++|+..++.....|
T Consensus 120 ~~~~A~~~f~~a~~~~ 135 (165)
T PRK15331 120 KAAKARQCFELVNERT 135 (165)
T ss_pred CHHHHHHHHHHHHhCc
Confidence 7777777776664444
No 257
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.16 E-value=8 Score=39.94 Aligned_cols=78 Identities=10% Similarity=0.161 Sum_probs=62.6
Q ss_pred chhHhhhHHHHhHhcCChhHHHHHhhhcCCCCc---cchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHH
Q 002834 285 DVSVCNALVSFYLRFGRTEEAELLFRRMKSRDL---VSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLP 361 (875)
Q Consensus 285 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~ 361 (875)
|+..|-.||.-|...|..++.++++++|..|-+ .+|...|++-....++..+..+|.+..... .. ...|..-+.
T Consensus 41 nI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~-l~--ldLW~lYl~ 117 (660)
T COG5107 41 NILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS-LN--LDLWMLYLE 117 (660)
T ss_pred hHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh-cc--HhHHHHHHH
Confidence 889999999999999999999999999998754 468888888888899999999999988765 44 444444444
Q ss_pred HHhc
Q 002834 362 ACAY 365 (875)
Q Consensus 362 ~~~~ 365 (875)
-..+
T Consensus 118 YIRr 121 (660)
T COG5107 118 YIRR 121 (660)
T ss_pred HHHh
Confidence 3333
No 258
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.66 E-value=0.97 Score=48.30 Aligned_cols=131 Identities=12% Similarity=0.182 Sum_probs=69.6
Q ss_pred HHHcCChHHHHHHHHHHH-HCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChH
Q 002834 666 YAMHGMGKAALKVFSDML-ELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQIS 744 (875)
Q Consensus 666 ~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 744 (875)
..-.++++++.++...-. -..++ ..-...+++-+.+.|..+.|+++.+.-.. -.+...+.|+++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L~ 335 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNLD 335 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-HH
T ss_pred HHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCHH
Confidence 344566666655554111 00111 23355566666677777777765432211 234456677777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 002834 745 DAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTR 822 (875)
Q Consensus 745 ~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 822 (875)
.|.+..++. +++..|..|...+..+||++.|+++++++-. +..|.-+|...|+-+.-.++-+....+
T Consensus 336 ~A~~~a~~~---~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 336 IALEIAKEL---DDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHCCCC---STHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHhc---CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 777766654 3566777777777777777777777776533 455666677777766555555544443
No 259
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.51 E-value=3.7 Score=36.11 Aligned_cols=126 Identities=9% Similarity=0.048 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHh
Q 002834 658 MLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLL 737 (875)
Q Consensus 658 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 737 (875)
....++..+...+........++.+...+ ..+...++.++..|++. +.++..+.++. .++.......+..+
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~-~~~~ll~~l~~-------~~~~yd~~~~~~~c 79 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY-DPQKEIERLDN-------KSNHYDIEKVGKLC 79 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH-CHHHHHHHHHh-------ccccCCHHHHHHHH
Confidence 34567777777888999999999998876 35666788888888765 34555555542 12333445577778
Q ss_pred hcCCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHhcccCCCCccHHHHHHHH
Q 002834 738 ARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIH-HEVELGRVVANRLFEMEADNIGNYVVMSNLY 803 (875)
Q Consensus 738 ~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 803 (875)
.+.|.++++.-++.++... ...+..+..+ ++.+.|++.+++ +.++..|..++..+
T Consensus 80 ~~~~l~~~~~~l~~k~~~~------~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~ 135 (140)
T smart00299 80 EKAKLYEEAVELYKKDGNF------KDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKAL 135 (140)
T ss_pred HHcCcHHHHHHHHHhhcCH------HHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHH
Confidence 8888888888888887522 2222333344 788888888876 33555666555444
No 260
>PRK11619 lytic murein transglycosylase; Provisional
Probab=93.46 E-value=17 Score=41.35 Aligned_cols=116 Identities=10% Similarity=0.095 Sum_probs=61.4
Q ss_pred cCChHHHHHHHHHHHHCC-CCCChh--hHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHH
Q 002834 669 HGMGKAALKVFSDMLELG-VNPDHV--VITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISD 745 (875)
Q Consensus 669 ~g~~~~A~~~~~~m~~~g-~~p~~~--~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 745 (875)
..+.+.|..++.+..... +.+... ....+.......+..+++..+++.... ...+.......+..-.+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~---~~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM---RSQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccc---ccCCcHHHHHHHHHHHHccCHHH
Confidence 345677888887764432 222222 122222222222225566666654422 11233344444555557788888
Q ss_pred HHHHHHhCCC-CCCHHHHHHHH-HHHHhcCChhHHHHHHHHHhc
Q 002834 746 AYSLVNRMPV-EADCNVWGTLL-GACRIHHEVELGRVVANRLFE 787 (875)
Q Consensus 746 A~~~~~~~~~-~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~ 787 (875)
+...+..|+. ..+..-|..-+ .+....|+.+.|...++++..
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 8888888751 11223344443 333557888888888888743
No 261
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.46 E-value=0.15 Score=49.73 Aligned_cols=93 Identities=10% Similarity=0.064 Sum_probs=57.1
Q ss_pred HHhhcCcHHHHHHHHHHhHHHhCCCC-ChhHHHHHHHHhhcCCChHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChh
Q 002834 700 ACSHAGLVDEGLEIFRSIEKVQGIKP-TPEQYASLVDLLARGGQISDAYSLVNRMPVEA--DCNVWGTLLGACRIHHEVE 776 (875)
Q Consensus 700 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~ 776 (875)
-|.++|++++|+.+|..... +.| +..++..-..+|.+.+++..|..-++....-. -...|..-+.+-...|+.+
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 45666777777776665544 445 55566666666666666666665555442111 1123334444444567888
Q ss_pred HHHHHHHHHhcccCCCCcc
Q 002834 777 LGRVVANRLFEMEADNIGN 795 (875)
Q Consensus 777 ~a~~~~~~~~~~~p~~~~~ 795 (875)
+|.+-++.+++++|++...
T Consensus 183 EAKkD~E~vL~LEP~~~EL 201 (536)
T KOG4648|consen 183 EAKKDCETVLALEPKNIEL 201 (536)
T ss_pred HHHHhHHHHHhhCcccHHH
Confidence 9999999999999986543
No 262
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.44 E-value=2.6 Score=38.75 Aligned_cols=159 Identities=16% Similarity=0.115 Sum_probs=86.6
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHH
Q 002834 656 VVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPD-HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLV 734 (875)
Q Consensus 656 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 734 (875)
+.+||-+.--+...|+++.|.+.|+...+. .|. ..++..-.-++.-.|++..|.+-|...-+ -.|+...-...+
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ---~D~~DPfR~LWL 173 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQ---DDPNDPFRSLWL 173 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhHHHHHHHHh---cCCCChHHHHHH
Confidence 356777777777888888888888887763 332 22332223345567788888776655533 333322111111
Q ss_pred HHhhcCCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCC-------CccHHHHHHHHHhcC
Q 002834 735 DLLARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADN-------IGNYVVMSNLYAADA 807 (875)
Q Consensus 735 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g 807 (875)
..-.+.-+..+|..-+.+--...|...|...+-.+.-.+=-+ +.+++++.+-..++ ..+|+.||..|...|
T Consensus 174 Yl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 174 YLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred HHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 112233355666643332222344455665543333211111 12223332222222 236889999999999
Q ss_pred CchhHHHHHHHHHh
Q 002834 808 RWDGVVEIRKLMKT 821 (875)
Q Consensus 808 ~~~~A~~~~~~~~~ 821 (875)
+.++|..++|....
T Consensus 252 ~~~~A~~LfKLaia 265 (297)
T COG4785 252 DLDEATALFKLAVA 265 (297)
T ss_pred cHHHHHHHHHHHHH
Confidence 99999999987553
No 263
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.31 E-value=8 Score=37.12 Aligned_cols=157 Identities=13% Similarity=0.065 Sum_probs=91.0
Q ss_pred HhcCCHHHHHHHhccCCCC------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCChhhHHHHHHHHhh-----
Q 002834 636 AKCGSIFSASKIFQCHPQK------DVVMLTAMIGGYAMHGMGKAALKVFSDMLELG-VNPDHVVITAVLSACSH----- 703 (875)
Q Consensus 636 ~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~a~~~----- 703 (875)
...|++++|.+.|+.+... ...+.-.++.++.+.+++++|+..+++....- -.|| .-|...|.+++.
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLSYFFQID 123 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhccCC
Confidence 4567777777777776641 12234445666677888888888888877642 2222 223333333222
Q ss_pred --cCcHHHHHHHHHHhHHHhCCCCCh------------------hHHHHHHHHhhcCCChHHHHHHHHhCC----CCC-C
Q 002834 704 --AGLVDEGLEIFRSIEKVQGIKPTP------------------EQYASLVDLLARGGQISDAYSLVNRMP----VEA-D 758 (875)
Q Consensus 704 --~g~~~~a~~~~~~~~~~~~~~p~~------------------~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p-~ 758 (875)
..|...+.+.+..+.+.-.--|+. .+=..+++-|.+.|.+..|..-++.|. ..+ -
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~ 203 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAV 203 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccch
Confidence 233333444444333321122331 112345677888898888887777773 111 2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCC
Q 002834 759 CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNI 793 (875)
Q Consensus 759 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 793 (875)
...+-.+..+|...|-.++|..+.+-+-...|+++
T Consensus 204 ~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 204 REALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 25566677888899999999888776666666655
No 264
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.29 E-value=4.8 Score=41.46 Aligned_cols=70 Identities=14% Similarity=0.073 Sum_probs=44.3
Q ss_pred HHHHHhhcCCChHHHHHHHHhhhcCC----Ccc---HHHHHHHHHH---cCCchHHHHHHHHHHHCCCCCCcchHhcHHH
Q 002834 530 PVISGYANCGSADEAFMTFSRIYARD----LTP---WNLMIRVYAE---NDFPNQALSLFLKLQAQGMKPDAVTIMSLLP 599 (875)
Q Consensus 530 ~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~---~~~l~~~~~~---~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 599 (875)
.++-+|....+++..+++++.+.... ..+ -...+-++.+ .|+.++|+.++..+....-.+++.+|..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 34445777777777777777775541 111 2234445566 8889999999988666656666666654443
No 265
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.28 E-value=0.75 Score=43.88 Aligned_cols=109 Identities=18% Similarity=0.243 Sum_probs=82.6
Q ss_pred HHHhccCC--CCChhhHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcC------------
Q 002834 645 SKIFQCHP--QKDVVMLTAMIGGYAMH-----GMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAG------------ 705 (875)
Q Consensus 645 ~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g------------ 705 (875)
++.|..+. +.|-.+|-+++..+..+ +.++-....++.|.+.|+.-|..+|+.||..+=+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 45566655 46777888888877643 456666777889999999999999999998775532
Q ss_pred ----cHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCCh-HHHHHHHHhCC
Q 002834 706 ----LVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQI-SDAYSLVNRMP 754 (875)
Q Consensus 706 ----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 754 (875)
+-+=++.++++|.. +|+.||.++-..+++++++.|.. .+...+.--||
T Consensus 134 HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred hCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 23448899999976 89999999999999999998864 34445554553
No 266
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.25 E-value=0.48 Score=42.69 Aligned_cols=90 Identities=12% Similarity=0.056 Sum_probs=72.1
Q ss_pred HHHhhcCCChHHHHHHHHhCC-CCC------CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhc
Q 002834 734 VDLLARGGQISDAYSLVNRMP-VEA------DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAAD 806 (875)
Q Consensus 734 ~~~~~~~g~~~~A~~~~~~~~-~~p------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 806 (875)
++-+-..|++++|..-|..+. ..| .++.|.+-..+..+.+..+.|+...-+++++.|....+...-+.+|.+.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 345667899999987776653 222 2345555566677889999999999999999999988888899999999
Q ss_pred CCchhHHHHHHHHHhCC
Q 002834 807 ARWDGVVEIRKLMKTRD 823 (875)
Q Consensus 807 g~~~~A~~~~~~~~~~~ 823 (875)
.++++|++=+|.+.+..
T Consensus 182 ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESD 198 (271)
T ss_pred hhHHHHHHHHHHHHHhC
Confidence 99999999998887643
No 267
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.06 E-value=3.4 Score=44.96 Aligned_cols=113 Identities=12% Similarity=0.011 Sum_probs=66.8
Q ss_pred chHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC-------CChhhHHHHHHHHHHcCChHHHHHH
Q 002834 606 SVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ-------KDVVMLTAMIGGYAMHGMGKAALKV 678 (875)
Q Consensus 606 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~ 678 (875)
..+.+.++...+.+.-|++.-..---...+...|++++|.+.|++... -....+--+...+....+|++|.+.
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 344445555554444444333344445566677888888888875442 1223444566667777888888888
Q ss_pred HHHHHHCCCCCChhhHHHHHH-HHhhcCcH-------HHHHHHHHHhHH
Q 002834 679 FSDMLELGVNPDHVVITAVLS-ACSHAGLV-------DEGLEIFRSIEK 719 (875)
Q Consensus 679 ~~~m~~~g~~p~~~~~~~ll~-a~~~~g~~-------~~a~~~~~~~~~ 719 (875)
|..+.+.. .-+..+|..+.. ++...|+. ++|.++|.++..
T Consensus 328 f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 328 FLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 88887742 334445555544 33456666 677777766643
No 268
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.79 E-value=0.2 Score=30.90 Aligned_cols=31 Identities=13% Similarity=0.058 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhcccCC
Q 002834 761 VWGTLLGACRIHHEVELGRVVANRLFEMEAD 791 (875)
Q Consensus 761 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 791 (875)
+|..+...+...|+.+.|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4666667777778888888888888877774
No 269
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.50 E-value=10 Score=36.23 Aligned_cols=207 Identities=17% Similarity=0.191 Sum_probs=111.7
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHC---CC--CCCcchHhcHHHHhhcccchHHHHHHHHHHHHhc-----CC-CchHHH
Q 002834 561 LMIRVYAENDFPNQALSLFLKLQAQ---GM--KPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRAC-----FD-GVRLNG 629 (875)
Q Consensus 561 ~l~~~~~~~~~~~~A~~~~~~m~~~---g~--~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~-----~~-~~~~~~ 629 (875)
.+++.+.+.+++++.+..+.+|..- .+ .-+..+.++++.-.+.....+....+++.-...- -. ...+..
T Consensus 70 QmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNt 149 (440)
T KOG1464|consen 70 QMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNT 149 (440)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccc
Confidence 3445555666666655555554321 11 1233445556655555555555555554433321 11 223335
Q ss_pred HHHHHhHhcCCHHHHHHHhccCCC--------C-------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCChhh
Q 002834 630 ALLHLYAKCGSIFSASKIFQCHPQ--------K-------DVVMLTAMIGGYAMHGMGKAALKVFSDMLELG-VNPDHVV 693 (875)
Q Consensus 630 ~l~~~~~~~g~~~~A~~~~~~~~~--------~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~ 693 (875)
.|...|...|.+..-.+++.++.+ . -...|..=|..|....+-.+-..+|++...-. .-|.+..
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI 229 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI 229 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH
Confidence 566777777777777666665442 1 12356666778887877778788888776522 2344433
Q ss_pred HHHHHHHH-----hhcCcHHHHHHHHHHhHHHhC--CCCChh---HHHHHHHHhhcCCC----hHHHHHHHHhCCCCCCH
Q 002834 694 ITAVLSAC-----SHAGLVDEGLEIFRSIEKVQG--IKPTPE---QYASLVDLLARGGQ----ISDAYSLVNRMPVEADC 759 (875)
Q Consensus 694 ~~~ll~a~-----~~~g~~~~a~~~~~~~~~~~~--~~p~~~---~~~~l~~~~~~~g~----~~~A~~~~~~~~~~p~~ 759 (875)
..+++-| .+.|.+++|..-|=++-+.+. -.|... -|-.|++.+.+.|- -+||. -.+..|..
T Consensus 230 -mGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAK----PyKNdPEI 304 (440)
T KOG1464|consen 230 -MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAK----PYKNDPEI 304 (440)
T ss_pred -HhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccC----CCCCCHHH
Confidence 4456655 356888887765544433232 223322 35666777777762 22221 11134555
Q ss_pred HHHHHHHHHHHhc
Q 002834 760 NVWGTLLGACRIH 772 (875)
Q Consensus 760 ~~~~~l~~~~~~~ 772 (875)
.+...+..+|+..
T Consensus 305 lAMTnlv~aYQ~N 317 (440)
T KOG1464|consen 305 LAMTNLVAAYQNN 317 (440)
T ss_pred HHHHHHHHHHhcc
Confidence 6677888887643
No 270
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.31 E-value=4 Score=36.08 Aligned_cols=87 Identities=17% Similarity=0.107 Sum_probs=47.0
Q ss_pred HhhcCcHHHHHHHHHHhHHHhCCCCChh-HHHHHHHHhhcCCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHH
Q 002834 701 CSHAGLVDEGLEIFRSIEKVQGIKPTPE-QYASLVDLLARGGQISDAYSLVNRMP-VEADCNVWGTLLGACRIHHEVELG 778 (875)
Q Consensus 701 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a 778 (875)
-.+.++.+++..++..+.- +.|... .-..-+..+.+.|+|.+|..+++++. ..|....-..|+..|.....-..=
T Consensus 20 al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred HHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHH
Confidence 3455667777777766644 555533 22333445566777777777777764 334444555666666544333333
Q ss_pred HHHHHHHhcccC
Q 002834 779 RVVANRLFEMEA 790 (875)
Q Consensus 779 ~~~~~~~~~~~p 790 (875)
...+..+++..|
T Consensus 97 r~~A~evle~~~ 108 (160)
T PF09613_consen 97 RRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHhcCC
Confidence 334444444444
No 271
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.21 E-value=1.4 Score=43.72 Aligned_cols=223 Identities=13% Similarity=0.034 Sum_probs=121.7
Q ss_pred HHHcCCchHHHHHHHHHHHCC--CCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCC------CchHHHHHHHHhHh
Q 002834 566 YAENDFPNQALSLFLKLQAQG--MKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFD------GVRLNGALLHLYAK 637 (875)
Q Consensus 566 ~~~~~~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~ 637 (875)
+....+.++|+..+.+-...- ...-..++..+..+.++.|..+++...--..+....+ --..+..+...+.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888887765431 1122356777888888888877776654333332211 11222333444444
Q ss_pred cCCHHHHHHHhccCCC-C-------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-----hhhHHHHHHHHhhc
Q 002834 638 CGSIFSASKIFQCHPQ-K-------DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPD-----HVVITAVLSACSHA 704 (875)
Q Consensus 638 ~g~~~~A~~~~~~~~~-~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~ll~a~~~~ 704 (875)
--++.+++.+-..-.. | .-....+|..++...+.++++++.|+...+---..+ -..+..|...|...
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 4444444444332111 1 112233455666666777888888777665311111 23466677777777
Q ss_pred CcHHHHHHHHHHhHH---HhCCCCChhHHH-----HHHHHhhcCCChHHHHHHHHhCC----CCCCH----HHHHHHHHH
Q 002834 705 GLVDEGLEIFRSIEK---VQGIKPTPEQYA-----SLVDLLARGGQISDAYSLVNRMP----VEADC----NVWGTLLGA 768 (875)
Q Consensus 705 g~~~~a~~~~~~~~~---~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~----~~p~~----~~~~~l~~~ 768 (875)
.|+++|.-+..++.+ .++++.-...|. .|.-+|-..|++-+|.+..++.. ...|. .....+...
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 788887776665533 133332222333 34445566677766666665542 12222 334456677
Q ss_pred HHhcCChhHHHHHHHHHhcc
Q 002834 769 CRIHHEVELGRVVANRLFEM 788 (875)
Q Consensus 769 ~~~~~~~~~a~~~~~~~~~~ 788 (875)
|+..|+.|.|..-|+++...
T Consensus 256 yR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHhcccHhHHHHHHHHHHHH
Confidence 77778888777777776543
No 272
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.14 E-value=14 Score=39.08 Aligned_cols=157 Identities=15% Similarity=0.128 Sum_probs=79.3
Q ss_pred CcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCc--cHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHh
Q 002834 524 NLVTFNPVISGYANCGSADEAFMTFSRIYARDLT--PWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVC 601 (875)
Q Consensus 524 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~ 601 (875)
|....-+++..+...-.+.-.+-+..+|..-+.. .|..++.+|..+ ..++-..+++++.+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve----------------- 126 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVE----------------- 126 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHH-----------------
Confidence 4455566677776666666666666665443322 255566665555 44445555555544
Q ss_pred hcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC------CCh---hhHHHHHHHHHHcCCh
Q 002834 602 SQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ------KDV---VMLTAMIGGYAMHGMG 672 (875)
Q Consensus 602 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~---~~~~~li~~~~~~g~~ 672 (875)
..+.+......|++.|.+ ++.+.+...|.++.. .+. ..|..++..- ..+.
T Consensus 127 ------------------~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~ 185 (711)
T COG1747 127 ------------------YDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDK 185 (711)
T ss_pred ------------------hcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccH
Confidence 333344444555555555 566666666654332 010 1333333211 2244
Q ss_pred HHHHHHHHHHHHC-CCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHH
Q 002834 673 KAALKVFSDMLEL-GVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEK 719 (875)
Q Consensus 673 ~~A~~~~~~m~~~-g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 719 (875)
+..+.+..+.... |..--.+.+..+..-|....++++|++++..+.+
T Consensus 186 D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~ 233 (711)
T COG1747 186 DFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILE 233 (711)
T ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhh
Confidence 4555555444432 2233334444455556666666666666665554
No 273
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.14 E-value=14 Score=37.07 Aligned_cols=20 Identities=0% Similarity=-0.268 Sum_probs=14.0
Q ss_pred HHHHhcCChhHHHHHHHHHh
Q 002834 767 GACRIHHEVELGRVVANRLF 786 (875)
Q Consensus 767 ~~~~~~~~~~~a~~~~~~~~ 786 (875)
..+.+.+|++.|...++-++
T Consensus 254 ~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 254 KKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHhhcCHHHHHHHHHHHH
Confidence 34566788888888877544
No 274
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.97 E-value=0.27 Score=30.95 Aligned_cols=25 Identities=12% Similarity=-0.007 Sum_probs=12.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHh
Q 002834 762 WGTLLGACRIHHEVELGRVVANRLF 786 (875)
Q Consensus 762 ~~~l~~~~~~~~~~~~a~~~~~~~~ 786 (875)
|..|...|...|++++|+..+++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555555555555555555533
No 275
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=91.60 E-value=23 Score=38.42 Aligned_cols=345 Identities=9% Similarity=-0.014 Sum_probs=168.8
Q ss_pred chhHhhhHHHHhHhcCChhHHHHHhhhcCC--CCccc-hHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHH
Q 002834 285 DVSVCNALVSFYLRFGRTEEAELLFRRMKS--RDLVS-WNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLP 361 (875)
Q Consensus 285 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~ 361 (875)
+...++.||.---...+.+.++.++..+.. |.... |-....-=.+.|..+.+.++|++-+.. ++-....|...+.
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a--ip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA--IPLSVDLWLSYLA 121 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--hhhHHHHHHHHHH
Confidence 445566666555555556777777777664 44332 233333445678889999999988764 5555555555554
Q ss_pred HHh-ccCChhhHHHHHHHHHhc-CCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcCCCCcchHHHHHHHHh---cc---
Q 002834 362 ACA-YLKNLKVGKEIHGYFLRH-PYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRRDLISWNSMLDAFS---ES--- 433 (875)
Q Consensus 362 ~~~-~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~---~~--- 433 (875)
-+. ..++.+..+..|...... |..--....|...+..-..++++.....+++++.+-....|+..-..|. +.
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~ 201 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEE 201 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCCh
Confidence 433 457777777777776664 3333333377888888888888888888888876654444443333222 11
Q ss_pred ---CChhHHHHHHHHHHHC----CCCCChhhHHHHHHHhhcc-CchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHh
Q 002834 434 ---GYNSQFLNLLNCMLME----GIRPDSITILTIIHFCTTV-LREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAK 505 (875)
Q Consensus 434 ---g~~~~a~~~~~~m~~~----g~~p~~~t~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 505 (875)
...+++.++-...... ...+........+.-.... +..+....+..... ...-.++..
T Consensus 202 ~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~--------------~~~~~~~~~ 267 (577)
T KOG1258|consen 202 KILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIV--------------SIHEKVYQK 267 (577)
T ss_pred hhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHH--------------HHHHHHHHh
Confidence 1122322222221110 0001111111111111100 00111111111110 111122333
Q ss_pred cCCHHHHHHHHHhhccCC----------CcccHHHHHHHhhcCCChHHHHHHHHhhhcCCC-cc--HHHHHHHHHHcCCc
Q 002834 506 CRNIKYAFNVFQSLLEKR----------NLVTFNPVISGYANCGSADEAFMTFSRIYARDL-TP--WNLMIRVYAENDFP 572 (875)
Q Consensus 506 ~g~~~~A~~~~~~~~~~p----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~ 572 (875)
.-...+..-.|+.-.++| +..+|..-+.--.+.|+.+.+.-+|++..-+-. .+ |.-.+.-....|+.
T Consensus 268 s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~ 347 (577)
T KOG1258|consen 268 SEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDV 347 (577)
T ss_pred hHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCch
Confidence 334444555555555543 445677777777777777777777777643322 11 44444444444666
Q ss_pred hHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHH
Q 002834 573 NQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSAS 645 (875)
Q Consensus 573 ~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 645 (875)
+-|-.++....+--++-.+.+-..--.-+-..|+.+.|..+++.+...-+.-..+-..-+....+.|+.+.+.
T Consensus 348 ~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 348 SLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred hHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 6666665554433222111111111112333455566666655555554223333333344444445444444
No 276
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.60 E-value=0.23 Score=44.08 Aligned_cols=86 Identities=13% Similarity=0.064 Sum_probs=64.9
Q ss_pred HHHHHhhccCCcchhhhHHHHHHHhCCCCCcchhhHHHHHhHhcCChhHHHHHhccCCCCCeeeHHHHHHHHHcCCCcch
Q 002834 151 IVLSACARLGGIFAGKSLHAYVIKFGLERHTLVGNSLTSMYAKRGLVHDAYSVFDSIEDKDVVSWNAVISGLSENKVLGD 230 (875)
Q Consensus 151 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 230 (875)
.+++.+.+.+.+.....+++.+.+.+...+....+.|+..|++.++.+...++++.... .....++..+-+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 45677777888888999999999887777788999999999999888888888884433 444566677777777777
Q ss_pred HHHHHHHHH
Q 002834 231 AFRLFSWML 239 (875)
Q Consensus 231 a~~l~~~m~ 239 (875)
+.-++..+.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 777777654
No 277
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.56 E-value=6 Score=36.04 Aligned_cols=129 Identities=10% Similarity=0.032 Sum_probs=78.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHH--HHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhH-----HH
Q 002834 659 LTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVIT--AVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQ-----YA 731 (875)
Q Consensus 659 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-----~~ 731 (875)
|..++.... .+.. +.....+++...+-....-++. .+...+...|++++|...++.... . |..+. --
T Consensus 57 Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~---~-t~De~lk~l~~l 130 (207)
T COG2976 57 YQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA---Q-TKDENLKALAAL 130 (207)
T ss_pred HHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc---c-chhHHHHHHHHH
Confidence 444444443 2333 5555566666542122222222 233467788999999998886654 1 22222 23
Q ss_pred HHHHHhhcCCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCC
Q 002834 732 SLVDLLARGGQISDAYSLVNRMPVEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNI 793 (875)
Q Consensus 732 ~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 793 (875)
.|.......|.+|+|+..++....+. .+..-..-..++...|+-+.|+..|+++++.+++++
T Consensus 131 RLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 131 RLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 45677888999999999998864211 122223334667788999999999999999886544
No 278
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=91.54 E-value=23 Score=38.38 Aligned_cols=181 Identities=13% Similarity=0.097 Sum_probs=121.0
Q ss_pred CchHHHHHHHHhHhcCCHHHHHHHhccCCCCCh---hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHH-
Q 002834 624 GVRLNGALLHLYAKCGSIFSASKIFQCHPQKDV---VMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLS- 699 (875)
Q Consensus 624 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~- 699 (875)
....|...++.-.+.|+.+...-+|++..-|-. ..|--.+.-....|+.+-|..++....+-- .|+......+-.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~-~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIH-VKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc-CCCCcHHHHHHHH
Confidence 445666777777888999999999988765422 345555555555588888887777766643 233222222222
Q ss_pred HHhhcCcHHHHHHHHHHhHHHhCCCCChh-HHHHHHHHhhcCCChHHHH---HHHHhCC-CCCCHHHHHH----HHHH-H
Q 002834 700 ACSHAGLVDEGLEIFRSIEKVQGIKPTPE-QYASLVDLLARGGQISDAY---SLVNRMP-VEADCNVWGT----LLGA-C 769 (875)
Q Consensus 700 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~---~~~~~~~-~~p~~~~~~~----l~~~-~ 769 (875)
-+-..|+.+.|..+++.+.+. . |+.. .-..-+....+.|..+.+. +++.... ...+..+... +... +
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence 345678999999999999884 3 6643 3334456677888888888 5555442 2223222222 2222 3
Q ss_pred HhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCC
Q 002834 770 RIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADAR 808 (875)
Q Consensus 770 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 808 (875)
...++.+.|..++.++++..|++-..|..+.++....+-
T Consensus 452 ~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 456899999999999999999999999999888777763
No 279
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.47 E-value=12 Score=35.48 Aligned_cols=51 Identities=12% Similarity=0.144 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccCC------CcccHHHHHHHhhcCCChHHHHHH
Q 002834 496 GNAILDAYAKCRNIKYAFNVFQSLLEKR------NLVTFNPVISGYANCGSADEAFMT 547 (875)
Q Consensus 496 ~~~li~~~~~~g~~~~A~~~~~~~~~~p------~~~~~~~l~~~~~~~~~~~~A~~~ 547 (875)
+-..|-.|....++..|.+.++.-.+.| +..+...|+.+| ..|+.+++..+
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 4555666667778888888887744432 555667777776 34455544444
No 280
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.35 E-value=30 Score=39.19 Aligned_cols=29 Identities=10% Similarity=0.279 Sum_probs=17.5
Q ss_pred chhHhhhHHHHhHhcCChhHHHHHhhhcC
Q 002834 285 DVSVCNALVSFYLRFGRTEEAELLFRRMK 313 (875)
Q Consensus 285 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 313 (875)
+...-+.|+.+|.+.++.+.-.++.+...
T Consensus 430 ~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 430 NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 34444566777777777666665555544
No 281
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.32 E-value=0.24 Score=31.14 Aligned_cols=24 Identities=8% Similarity=0.264 Sum_probs=20.7
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHH
Q 002834 796 YVVMSNLYAADARWDGVVEIRKLM 819 (875)
Q Consensus 796 ~~~l~~~~~~~g~~~~A~~~~~~~ 819 (875)
|..||++|.+.|+|++|+++++..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 678999999999999999988774
No 282
>PRK09687 putative lyase; Provisional
Probab=91.26 E-value=17 Score=36.34 Aligned_cols=236 Identities=12% Similarity=0.035 Sum_probs=116.6
Q ss_pred CCchhhhHHHHHHHccCCchHHHHhhccCCCCCchhHHHHHHHHhcCCCCh----hHHHHHHHHhHhcCCCCCCcchHHH
Q 002834 76 SCQAVSKALLNLYAKCGVIDDCYKLFGQVDNTDPVTWNILLSGFACSHVDD----ARVMNLFYNMHVRDQPKPNSVTVAI 151 (875)
Q Consensus 76 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~----~~a~~~~~~m~~~~~~~~~~~~~~~ 151 (875)
++..+....+.++.+.|..+....+..-+..+|+..=...+.++++-| +. .+++..+..+.... ++...-..
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg-~~~~~~~~a~~~L~~l~~~D---~d~~VR~~ 110 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLG-MAKRCQDNVFNILNNLALED---KSACVRAS 110 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHhcC---CCHHHHHH
Confidence 344444555555555554333333333233445554445555555555 42 35666666653332 44444445
Q ss_pred HHHHhhccCCcch--hhhHHHHHHHhCCCCCcchhhHHHHHhHhcCChhHHHHHhccCCCCCeeeHHHHHHHHHcCC-Cc
Q 002834 152 VLSACARLGGIFA--GKSLHAYVIKFGLERHTLVGNSLTSMYAKRGLVHDAYSVFDSIEDKDVVSWNAVISGLSENK-VL 228 (875)
Q Consensus 152 ll~~~~~~~~~~~--a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~ 228 (875)
.+.+++..+.... .....+.+...-..++..+--..+.++.+.|+.+....+..-+..+|...-...+.++.+.+ ..
T Consensus 111 A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~ 190 (280)
T PRK09687 111 AINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN 190 (280)
T ss_pred HHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC
Confidence 5555544332111 11222323222234455566666666766666443333333333444433333344444332 12
Q ss_pred chHHHHHHHHHhCCCCCChhhHHhHHHHhccCCccccccchhHHHHHHHHhcccCCchhHhhhHHHHhHhcCChhHHHHH
Q 002834 229 GDAFRLFSWMLTEPIKPNYATILNILPICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAELL 308 (875)
Q Consensus 229 ~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 308 (875)
..+...+..+... + +..+....+.++.+.|+....-.+
T Consensus 191 ~~~~~~L~~~L~D---~---------------------------------------~~~VR~~A~~aLg~~~~~~av~~L 228 (280)
T PRK09687 191 PDIREAFVAMLQD---K---------------------------------------NEEIRIEAIIGLALRKDKRVLSVL 228 (280)
T ss_pred HHHHHHHHHHhcC---C---------------------------------------ChHHHHHHHHHHHccCChhHHHHH
Confidence 3344444444321 1 555566666666666664433334
Q ss_pred hhhcCCCCccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHH
Q 002834 309 FRRMKSRDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPAC 363 (875)
Q Consensus 309 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~ 363 (875)
.+.+..++ ..-..+.++...|.. +|+..+..+.... ||...-...+.+|
T Consensus 229 i~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~---~d~~v~~~a~~a~ 277 (280)
T PRK09687 229 IKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYKF---DDNEIITKAIDKL 277 (280)
T ss_pred HHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhC---CChhHHHHHHHHH
Confidence 44444433 234567777888875 6888888887654 5766655555554
No 283
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.07 E-value=32 Score=38.99 Aligned_cols=116 Identities=12% Similarity=0.045 Sum_probs=64.5
Q ss_pred hHHHHhHhcCChhHHHHHhhhcCCCCccchHHHH----HHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcc
Q 002834 291 ALVSFYLRFGRTEEAELLFRRMKSRDLVSWNAII----AGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYL 366 (875)
Q Consensus 291 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li----~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~ 366 (875)
.-+....+..-++.|..+-+.-..+ ..+...+. .-+.+.|++++|...|-+-... +.|.. ++.-+...
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~~~d-~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~s~-----Vi~kfLda 410 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQHLD-EDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LEPSE-----VIKKFLDA 410 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CChHH-----HHHHhcCH
Confidence 3445556666666666665544322 22222222 3345678888888888665433 33332 33334444
Q ss_pred CChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcC
Q 002834 367 KNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMIC 416 (875)
Q Consensus 367 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 416 (875)
..+..--..++.+.+.|+...+ --..|+.+|.+.++.++-.++.+...
T Consensus 411 q~IknLt~YLe~L~~~gla~~d--httlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLANSD--HTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHHHcccccch--hHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 4444445555666666665444 23567777777777777666655543
No 284
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.02 E-value=11 Score=33.57 Aligned_cols=122 Identities=16% Similarity=0.139 Sum_probs=86.4
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChhh-HHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHH--HHHHhhcCCC
Q 002834 666 YAMHGMGKAALKVFSDMLELGVNPDHVV-ITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYAS--LVDLLARGGQ 742 (875)
Q Consensus 666 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~--l~~~~~~~g~ 742 (875)
+++.+..++|+.-|.++.+.|...-.+. ...........|+...|...|+++-.+..++.-..-... -..++...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 5678899999999999998876543322 222233567889999999999999774333221112222 2345678999
Q ss_pred hHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 002834 743 ISDAYSLVNRMPVEAD---CNVWGTLLGACRIHHEVELGRVVANRLFE 787 (875)
Q Consensus 743 ~~~A~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 787 (875)
+++....++.+..+.+ ...-..|.-+-.+.|++..|...|+++..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 9999998888853333 35556777777899999999999999877
No 285
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=90.78 E-value=5.2 Score=42.87 Aligned_cols=161 Identities=7% Similarity=-0.012 Sum_probs=94.4
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCCh
Q 002834 326 GYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDM 405 (875)
Q Consensus 326 ~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 405 (875)
...-.++++++.+..+.-.-...+ | ..-...++.-+.+.|-.+.|.++-. |+ ..-.+...++|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~---------D~----~~rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNI-P-KDQGQSIARFLEKKGYPELALQFVT---------DP----DHRFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------H----HHHHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcccC-C-hhHHHHHHHHHHHCCCHHHHHhhcC---------Ch----HHHhHHHHhcCCH
Confidence 344567777766665411100002 2 3335566666666676666666532 11 2334556678888
Q ss_pred hHHHHHHHhcCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHHHhc
Q 002834 406 EAAYRTFLMICRRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTG 485 (875)
Q Consensus 406 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 485 (875)
+.|.++.+++. +...|..|......+|+.+-|.+.|.+..+ |..++-.+.-.|+.+...++.+.....|
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 88888877655 566899999999999999999998887543 4555556666777777777777777665
Q ss_pred CCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 002834 486 LLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLE 521 (875)
Q Consensus 486 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 521 (875)
- ++....++.-.|+.++..+++.+-..
T Consensus 404 ~---------~n~af~~~~~lgd~~~cv~lL~~~~~ 430 (443)
T PF04053_consen 404 D---------INIAFQAALLLGDVEECVDLLIETGR 430 (443)
T ss_dssp ----------HHHHHHHHHHHT-HHHHHHHHHHTT-
T ss_pred C---------HHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence 4 35555566667777777777766543
No 286
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.77 E-value=7.7 Score=34.46 Aligned_cols=122 Identities=17% Similarity=0.058 Sum_probs=74.5
Q ss_pred HHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHH
Q 002834 567 AENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASK 646 (875)
Q Consensus 567 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 646 (875)
.+.+..++|+.-|..+.+.|... |-.|- ...........|+...|..
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~----YpvLA-----------------------------~mr~at~~a~kgdta~AV~ 115 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGS----YPVLA-----------------------------RMRAATLLAQKGDTAAAVA 115 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCc----chHHH-----------------------------HHHHHHHHhhcccHHHHHH
Confidence 66777888888888887765432 11111 1223344566788888888
Q ss_pred HhccCCCC--ChhhH-----HHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHH
Q 002834 647 IFQCHPQK--DVVML-----TAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEK 719 (875)
Q Consensus 647 ~~~~~~~~--~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 719 (875)
.|+++... -+... ---...+..+|-+++.....+.+-..+-+.-...-..|.-+-.+.|++..|.++|..+..
T Consensus 116 aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 116 AFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 88876641 11111 111233556788888888777776554333333444555577788899999988888876
Q ss_pred Hh
Q 002834 720 VQ 721 (875)
Q Consensus 720 ~~ 721 (875)
+.
T Consensus 196 Da 197 (221)
T COG4649 196 DA 197 (221)
T ss_pred cc
Confidence 43
No 287
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.35 E-value=21 Score=39.88 Aligned_cols=33 Identities=30% Similarity=0.251 Sum_probs=26.0
Q ss_pred CchHHHHHHHHhHhcCCHHHHHHHhccCCCCCh
Q 002834 624 GVRLNGALLHLYAKCGSIFSASKIFQCHPQKDV 656 (875)
Q Consensus 624 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 656 (875)
+..+...|+..|...+++..|.+++-...++++
T Consensus 504 ~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 504 STALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred chhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 445566788999999999999999888876554
No 288
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.31 E-value=35 Score=38.27 Aligned_cols=272 Identities=14% Similarity=0.111 Sum_probs=135.3
Q ss_pred HHHHHHHHHhhccCCCcccHHHHHHH-----hhcCCChHHHHHHHHhhhc-------CC-CccHHHHHHHHHHcC-----
Q 002834 509 IKYAFNVFQSLLEKRNLVTFNPVISG-----YANCGSADEAFMTFSRIYA-------RD-LTPWNLMIRVYAEND----- 570 (875)
Q Consensus 509 ~~~A~~~~~~~~~~p~~~~~~~l~~~-----~~~~~~~~~A~~~~~~~~~-------~~-~~~~~~l~~~~~~~~----- 570 (875)
...|.+.++......+...-..+... +....+++.|...|+.+.+ .+ +.....+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~ 307 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKI 307 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccc
Confidence 45677777776665454444333332 4455677777777766644 22 223555555555543
Q ss_pred CchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHh-cCCHHHHHHHhc
Q 002834 571 FPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAK-CGSIFSASKIFQ 649 (875)
Q Consensus 571 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~ 649 (875)
+.+.|+.++....+.| .|+...+ -..+..... -.+...|.++|.
T Consensus 308 d~~~A~~~~~~aA~~g-~~~a~~~----------------------------------lg~~~~~g~~~~d~~~A~~yy~ 352 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELG-NPDAQYL----------------------------------LGVLYETGTKERDYRRAFEYYS 352 (552)
T ss_pred cHHHHHHHHHHHHhcC-CchHHHH----------------------------------HHHHHHcCCccccHHHHHHHHH
Confidence 3344555555555544 2332222 111111111 123455555555
Q ss_pred cCCC-CChhhHHHHHHHHH----HcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCC
Q 002834 650 CHPQ-KDVVMLTAMIGGYA----MHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIK 724 (875)
Q Consensus 650 ~~~~-~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 724 (875)
...+ -.+.++-.+..+|. ...+...|..++.+..+.| .|...--...+..+.. ++++.+.-.+..+.+ .+.+
T Consensus 353 ~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~-~g~~ 429 (552)
T KOG1550|consen 353 LAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAE-LGYE 429 (552)
T ss_pred HHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHH-hhhh
Confidence 5443 22333322332222 2235677888888887776 3332222233333444 566666555555544 2322
Q ss_pred CChhHHHHHHHHh-----hc--CCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CChhHHHHHHHHHhcccCCCC
Q 002834 725 PTPEQYASLVDLL-----AR--GGQISDAYSLVNRMPVEADCNVWGTLLGACRIH----HEVELGRVVANRLFEMEADNI 793 (875)
Q Consensus 725 p~~~~~~~l~~~~-----~~--~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~p~~~ 793 (875)
-....-..+.+.. .+ ..+.+.+...+.+....-+......|...+... .+.+.|...+.++-+.. +
T Consensus 430 ~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~ 506 (552)
T KOG1550|consen 430 VAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---A 506 (552)
T ss_pred HHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---h
Confidence 2111111111111 11 224556666666665555555555555544332 36778887777777665 6
Q ss_pred ccHHHHHHHHHhc-C--CchhHHHHHHHHHh
Q 002834 794 GNYVVMSNLYAAD-A--RWDGVVEIRKLMKT 821 (875)
Q Consensus 794 ~~~~~l~~~~~~~-g--~~~~A~~~~~~~~~ 821 (875)
.....|+++|-.- | ++..|.+.+....+
T Consensus 507 ~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 507 QALFNLGYMHEHGEGIKVLHLAKRYYDQASE 537 (552)
T ss_pred HHHhhhhhHHhcCcCcchhHHHHHHHHHHHh
Confidence 6677777776552 1 15666666655544
No 289
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.28 E-value=13 Score=33.49 Aligned_cols=58 Identities=14% Similarity=0.131 Sum_probs=29.9
Q ss_pred HHHHHHHhhcCCChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCchHHHHHHHHHHHC
Q 002834 528 FNPVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQAQ 585 (875)
Q Consensus 528 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 585 (875)
+..++..+...|++-+|.++.+.....+..+...++.+-.+.++...-..+|+-..+.
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3444455555555555555555544444444444555545555555555555544443
No 290
>PRK09687 putative lyase; Provisional
Probab=90.12 E-value=22 Score=35.62 Aligned_cols=79 Identities=9% Similarity=-0.015 Sum_probs=43.9
Q ss_pred chhHhhhHHHHhHhcCChhHHHHHhhhcCCCCccchHHHHHHHHcCCCH----HHHHHHHHHHHHcCCCCCChhhHHHHH
Q 002834 285 DVSVCNALVSFYLRFGRTEEAELLFRRMKSRDLVSWNAIIAGYASNDEW----LKALNLFCELITKEMIWPDSVTLVSLL 360 (875)
Q Consensus 285 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~a~~~~~~m~~~~~~~pd~~t~~~ll 360 (875)
|..+....+..+...|..+....+..-+..+|...-...+.++.+.|+. .+++..+..+.... ||...-...+
T Consensus 36 d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D---~d~~VR~~A~ 112 (280)
T PRK09687 36 NSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALED---KSACVRASAI 112 (280)
T ss_pred CHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcC---CCHHHHHHHH
Confidence 5556666666666666544444444433445555555566666666653 45666676664433 5555555555
Q ss_pred HHHhcc
Q 002834 361 PACAYL 366 (875)
Q Consensus 361 ~~~~~~ 366 (875)
.++...
T Consensus 113 ~aLG~~ 118 (280)
T PRK09687 113 NATGHR 118 (280)
T ss_pred HHHhcc
Confidence 555444
No 291
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=89.93 E-value=1.3 Score=30.68 Aligned_cols=34 Identities=26% Similarity=0.146 Sum_probs=26.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhcccCCCCccHH
Q 002834 764 TLLGACRIHHEVELGRVVANRLFEMEADNIGNYV 797 (875)
Q Consensus 764 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 797 (875)
.+.-++.+.|+++.|.+..+.+++.+|+|..+-.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 4556778999999999999999999999866543
No 292
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.42 E-value=19 Score=35.18 Aligned_cols=54 Identities=6% Similarity=-0.126 Sum_probs=49.2
Q ss_pred HHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHH
Q 002834 767 GACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMK 820 (875)
Q Consensus 767 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 820 (875)
..|...|.+..|.++.++++.++|-+...+..|.++|+..|+--+|.+-++++.
T Consensus 287 ~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 287 RAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 567889999999999999999999999999999999999999888888776665
No 293
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.23 E-value=3.3 Score=40.83 Aligned_cols=115 Identities=9% Similarity=-0.057 Sum_probs=88.0
Q ss_pred hhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC-C-CCCHHHHHHHH----HHHHhcCCh
Q 002834 702 SHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP-V-EADCNVWGTLL----GACRIHHEV 775 (875)
Q Consensus 702 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~----~~~~~~~~~ 775 (875)
...|+.-+|...++++.++ .+.|...+..-=+++.-.|+.+.-...++++. . .||.+.+..+- -+....|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3467778888888888875 44555566666677778888888888888873 2 55654444333 233467999
Q ss_pred hHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHH
Q 002834 776 ELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKL 818 (875)
Q Consensus 776 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 818 (875)
+.|++.++++++++|.|.=+.-..+.++..+|+..++.+...+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 9999999999999999988888999999999999999996543
No 294
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.10 E-value=20 Score=33.76 Aligned_cols=91 Identities=8% Similarity=0.115 Sum_probs=57.1
Q ss_pred CcHHHHHHHHHHhHHHhCCCCC-hh---HHHHHHHHhhcCCChHHHHHHHHhCC---CCCCHHHHH-----HHHHHHHhc
Q 002834 705 GLVDEGLEIFRSIEKVQGIKPT-PE---QYASLVDLLARGGQISDAYSLVNRMP---VEADCNVWG-----TLLGACRIH 772 (875)
Q Consensus 705 g~~~~a~~~~~~~~~~~~~~p~-~~---~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~-----~l~~~~~~~ 772 (875)
.++++|+..|+..-+-+..... .. ++.-+...-...|++.+|++++++.. ...+..-|. .-.+.|...
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 4677777777777664433322 22 33333344456788999999998874 222222222 223556655
Q ss_pred -CChhHHHHHHHHHhcccCCCCcc
Q 002834 773 -HEVELGRVVANRLFEMEADNIGN 795 (875)
Q Consensus 773 -~~~~~a~~~~~~~~~~~p~~~~~ 795 (875)
.|.-.+..++++-.+++|.....
T Consensus 208 ~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred cccHHHHHHHHHHHHhcCCccccc
Confidence 78888899999999999986554
No 295
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.94 E-value=2.2 Score=37.63 Aligned_cols=51 Identities=8% Similarity=0.083 Sum_probs=26.4
Q ss_pred hcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 771 IHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 771 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
..++.+.++.++.-+--+.|+.+..-..-++++...|+|.+|+.+++.+.+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 344555555555555555555555555555555555555555555555433
No 296
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.84 E-value=25 Score=34.57 Aligned_cols=51 Identities=12% Similarity=0.066 Sum_probs=32.9
Q ss_pred cccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC
Q 002834 603 QMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ 653 (875)
Q Consensus 603 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (875)
..++...+...++.+......+..+.-.++.+|...|+.+.|..++..++.
T Consensus 146 ~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~ 196 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPL 196 (304)
T ss_pred hccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcc
Confidence 344555555555555555555555566677777778888888888877764
No 297
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.80 E-value=20 Score=33.78 Aligned_cols=95 Identities=7% Similarity=0.034 Sum_probs=42.5
Q ss_pred HhhcCcHHHHHHHHHHhHHHhC----CCCChhHHHHHHHHhhcC-CChHHHHHHHHhCC--CC---CCHHHHHHHH---H
Q 002834 701 CSHAGLVDEGLEIFRSIEKVQG----IKPTPEQYASLVDLLARG-GQISDAYSLVNRMP--VE---ADCNVWGTLL---G 767 (875)
Q Consensus 701 ~~~~g~~~~a~~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~--~~---p~~~~~~~l~---~ 767 (875)
|.+.+++++|...++...+.+. +.--..++-.+.+.|-.. .+++.|+..+++.. .. .+...-..++ .
T Consensus 83 cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ 162 (288)
T KOG1586|consen 83 CYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQ 162 (288)
T ss_pred HhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHH
Confidence 4444566666666655443211 111122333444555433 45555555555542 11 1111111222 1
Q ss_pred HHHhcCChhHHHHHHHHHhcccCCCCcc
Q 002834 768 ACRIHHEVELGRVVANRLFEMEADNIGN 795 (875)
Q Consensus 768 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 795 (875)
.....+++.+|+.+|++...-.-+|+..
T Consensus 163 yaa~leqY~~Ai~iyeqva~~s~~n~LL 190 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARSSLDNNLL 190 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence 1223456666666666666665555544
No 298
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.77 E-value=46 Score=37.46 Aligned_cols=49 Identities=12% Similarity=0.158 Sum_probs=36.0
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHhcCCCCcchHHHHHHHHhccCChhHH
Q 002834 391 VGNALVSFYAKCSDMEAAYRTFLMICRRDLISWNSMLDAFSESGYNSQF 439 (875)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 439 (875)
++..+|+.+...|++++|-+..-.|...+..-|.-.+..+...++....
T Consensus 394 v~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 394 VGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 6677788888888888888888877777777777766666666655443
No 299
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.60 E-value=23 Score=33.70 Aligned_cols=26 Identities=8% Similarity=0.114 Sum_probs=14.0
Q ss_pred ccHHHHHHHhhcCCChHHHHHHHHhh
Q 002834 526 VTFNPVISGYANCGSADEAFMTFSRI 551 (875)
Q Consensus 526 ~~~~~l~~~~~~~~~~~~A~~~~~~~ 551 (875)
..|.....+|...+++++|...+.+.
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA 57 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKA 57 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 34555555665555555555554443
No 300
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.50 E-value=24 Score=33.86 Aligned_cols=231 Identities=13% Similarity=0.083 Sum_probs=133.9
Q ss_pred cCChhHHHHHhhhcCC--CCc-----cchHHHHHHHHcCCCHHHHHHHHHHHHHc---CCCC--CChhhHHHHHHHHhcc
Q 002834 299 FGRTEEAELLFRRMKS--RDL-----VSWNAIIAGYASNDEWLKALNLFCELITK---EMIW--PDSVTLVSLLPACAYL 366 (875)
Q Consensus 299 ~g~~~~A~~~~~~~~~--~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~--pd~~t~~~ll~~~~~~ 366 (875)
...+++|+.-|....+ +.- .+.-.+|....+.+++++.+..|.+|..- . +. -+..+.++++.-.+..
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSA-VTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSA-VTRNYSEKSINSILDYISTS 118 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH-HhccccHHHHHHHHHHHhhh
Confidence 3467888888877653 222 23455788889999999999998887542 1 21 3455677888877777
Q ss_pred CChhhHHHHHHHHHhcCCCCch----hhHHHHHHHHHhcCCChhHHHHHHHhcCC---C-----C-------cchHHHHH
Q 002834 367 KNLKVGKEIHGYFLRHPYLEED----AAVGNALVSFYAKCSDMEAAYRTFLMICR---R-----D-------LISWNSML 427 (875)
Q Consensus 367 ~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~-----~-------~~~~~~li 427 (875)
.+.+....+++.-++.--...+ ..+-..|...|...|.+....++++++.. . | ...|..-|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 7777777666654332111110 11235677778888888888887777622 1 1 23577777
Q ss_pred HHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhc-----cCchhhHH-HHHHHHHHhcCCCCCCch--hHHHHH
Q 002834 428 DAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTT-----VLREGMVK-ETHGYLIKTGLLLGDTEH--NIGNAI 499 (875)
Q Consensus 428 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~-----~~~~~~a~-~~~~~~~~~~~~~~~~~~--~~~~~l 499 (875)
..|..+.+-.+...+|++.+.............+|+-|.. .|.++.|. .+|+.+......+++... .-|-.|
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVL 278 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVL 278 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHH
Confidence 8888888888888888877654333333344456666643 35555544 344444433321112221 124455
Q ss_pred HHHHHhcCCHHHHHHHHHhhccC-----CCcccHHHHHHHh
Q 002834 500 LDAYAKCRNIKYAFNVFQSLLEK-----RNLVTFNPVISGY 535 (875)
Q Consensus 500 i~~~~~~g~~~~A~~~~~~~~~~-----p~~~~~~~l~~~~ 535 (875)
.+++.++|- .-|+.-..+ |.+.+.+.++.+|
T Consensus 279 ANMLmkS~i-----NPFDsQEAKPyKNdPEIlAMTnlv~aY 314 (440)
T KOG1464|consen 279 ANMLMKSGI-----NPFDSQEAKPYKNDPEILAMTNLVAAY 314 (440)
T ss_pred HHHHHHcCC-----CCCcccccCCCCCCHHHHHHHHHHHHH
Confidence 566655541 111111112 4556777777777
No 301
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=88.49 E-value=0.23 Score=44.02 Aligned_cols=128 Identities=11% Similarity=0.005 Sum_probs=77.5
Q ss_pred HHHHhcccCchHHHHHHHHHHHHhcCCCCchhhhHHHHHHHccCCchHHHHhhccCCCCCchhHHHHHHHHhcCCCChhH
Q 002834 49 VLKSCTSLADILLGKALHGYVTKLGHISCQAVSKALLNLYAKCGVIDDCYKLFGQVDNTDPVTWNILLSGFACSHVDDAR 128 (875)
Q Consensus 49 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~ 128 (875)
+++.+...+........++.+...+...+....+.++..|++.++.+...++++.... .....++..+-+.+ .+++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~-l~~~ 88 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHG-LYEE 88 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTT-SHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcc-hHHH
Confidence 4556666666777777777777666666788888888899888888888888874332 34445666666667 7777
Q ss_pred HHHHHHHhHhcCCCCCCcchHHHHHHHhhccCCcchhhhHHHHHHHhCCCCCcchhhHHHHHhHhcCC
Q 002834 129 VMNLFYNMHVRDQPKPNSVTVAIVLSACARLGGIFAGKSLHAYVIKFGLERHTLVGNSLTSMYAKRGL 196 (875)
Q Consensus 129 a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 196 (875)
+.-+|.++.... ..+..+...++++.|.+.... .++..+|..+++.+...++
T Consensus 89 a~~Ly~~~~~~~----------~al~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 89 AVYLYSKLGNHD----------EALEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHCCTTHT----------TCSSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHcccHH----------HHHHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCc
Confidence 777777654332 001112334455555543322 3445666666666655544
No 302
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=88.45 E-value=6.1 Score=41.61 Aligned_cols=141 Identities=16% Similarity=0.122 Sum_probs=74.6
Q ss_pred HcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHH
Q 002834 668 MHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAY 747 (875)
Q Consensus 668 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 747 (875)
+..+.+.-++.-.+..+ +.||-.+-..++ +--.+.-+.++.+++++..+. + ...+..- ......|..-+
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-g----E~~lg~s-~~~~~~g~~~e-- 248 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-G----EASLGKS-QFLQHHGHFWE-- 248 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-H----HHhhchh-hhhhcccchhh--
Confidence 33455555566666665 456654433332 233445677888888777652 1 0000000 00001111111
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCC--CCccHHHHHHHHHhcCCchhHHHHHHHHH
Q 002834 748 SLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEAD--NIGNYVVMSNLYAADARWDGVVEIRKLMK 820 (875)
Q Consensus 748 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 820 (875)
.+..-...|-..+-..|..++++.|+.++|++.++.+++..|. +-..+..|...+-..+++.++..++.+=-
T Consensus 249 -~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 249 -AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred -hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 1111112222333445666667778888888888888777664 34466677777788888888888776643
No 303
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.08 E-value=2.3 Score=36.75 Aligned_cols=52 Identities=10% Similarity=0.027 Sum_probs=36.1
Q ss_pred cCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 002834 772 HHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTRD 823 (875)
Q Consensus 772 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 823 (875)
..+.+.++.++..+--+.|+.+..-..-++++...|+|++|.++++.+.+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 5666666667666666777777777777777777777777777776665543
No 304
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=87.96 E-value=3.5 Score=39.59 Aligned_cols=97 Identities=13% Similarity=0.161 Sum_probs=65.3
Q ss_pred HHHHHHhcC--CCCcchHHHHHHHHhcc-----CChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccC-----------
Q 002834 408 AYRTFLMIC--RRDLISWNSMLDAFSES-----GYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVL----------- 469 (875)
Q Consensus 408 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~----------- 469 (875)
.++.|.... ++|-.+|-+.+..+... +..+-....++.|.+-|+.-|..+|..||+.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 355566665 56777888888777543 556666777888999999999999999998764432
Q ss_pred -----chhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcC
Q 002834 470 -----REGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCR 507 (875)
Q Consensus 470 -----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 507 (875)
.-+-+.+++++|...|+ .|+..+-..+++++.+.+
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGV---mPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGV---MPDKEIEDILVNAFGRWN 172 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCC---CCchHHHHHHHHHhcccc
Confidence 12335555666666666 666666666666665554
No 305
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=87.55 E-value=1.8 Score=28.72 Aligned_cols=27 Identities=19% Similarity=0.226 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002834 658 MLTAMIGGYAMHGMGKAALKVFSDMLE 684 (875)
Q Consensus 658 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 684 (875)
+|..+...|...|++++|+++|++.++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355556666666666666666666665
No 306
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.29 E-value=2.5 Score=38.85 Aligned_cols=75 Identities=12% Similarity=0.108 Sum_probs=56.2
Q ss_pred hcCCChHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCC----CCccHHHHHHHHHhcCCchh
Q 002834 738 ARGGQISDAYSLVNRMPVEA--DCNVWGTLLGACRIHHEVELGRVVANRLFEMEAD----NIGNYVVMSNLYAADARWDG 811 (875)
Q Consensus 738 ~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~ 811 (875)
.+.|+ ++|...|-++...| +......-+..+....|.++++..+-+++++.+. ||..+..|+.+|.+.|++++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 44455 66777776665333 3344555566677789999999999999998654 47788999999999999998
Q ss_pred HH
Q 002834 812 VV 813 (875)
Q Consensus 812 A~ 813 (875)
|-
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 74
No 307
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=87.06 E-value=62 Score=36.99 Aligned_cols=164 Identities=8% Similarity=0.018 Sum_probs=78.4
Q ss_pred chHHHHHHHHh-hcCChhhHHHHHHHHhhcCCCCCCCh--hh-HHHHHHHhcccCchHHHHHHHHHHHHhc----CCCCc
Q 002834 7 KSWITIINGFC-RDGLHKEALSLFAHELQSSPSVRHNH--QL-FSAVLKSCTSLADILLGKALHGYVTKLG----HISCQ 78 (875)
Q Consensus 7 ~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~--~~-~~~ll~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 78 (875)
.++-.+...+. .+.++++|...+.+............ .. -..+++.+.+.+... |....+..++.- ..+-.
T Consensus 60 ~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~ 138 (608)
T PF10345_consen 60 RVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWY 138 (608)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHH
Confidence 34555555555 77777888877777765432111111 11 112334444444333 666666655431 22223
Q ss_pred hhhhHH-HHHHHccCCchHHHHhhccCCC-------CCchhHHHHHHHHh--cCCCChhHHHHHHHHhHhcCC-C-----
Q 002834 79 AVSKAL-LNLYAKCGVIDDCYKLFGQVDN-------TDPVTWNILLSGFA--CSHVDDARVMNLFYNMHVRDQ-P----- 142 (875)
Q Consensus 79 ~~~~~l-~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~--~~~~~~~~a~~~~~~m~~~~~-~----- 142 (875)
..+.-+ +..+...+++..|...++.+.. |.+..+-.++.+.. +.+ .++++++.++++..... +
T Consensus 139 ~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~-~~~d~~~~l~~~~~~~~~~q~~~~ 217 (608)
T PF10345_consen 139 YAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRG-SPDDVLELLQRAIAQARSLQLDPS 217 (608)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHHHhhcccCCC
Confidence 333333 2233233677777777765521 22233333333322 334 56667777766633220 1
Q ss_pred --CCCcchHHHHHHHhh--ccCCcchhhhHHHHH
Q 002834 143 --KPNSVTVAIVLSACA--RLGGIFAGKSLHAYV 172 (875)
Q Consensus 143 --~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~ 172 (875)
.|-..+|..++..|+ ..|++..+.+.+..+
T Consensus 218 ~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 218 VHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 223456666666665 345555555544443
No 308
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.66 E-value=1.5 Score=26.85 Aligned_cols=27 Identities=22% Similarity=0.225 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002834 658 MLTAMIGGYAMHGMGKAALKVFSDMLE 684 (875)
Q Consensus 658 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 684 (875)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455566666666666666666666655
No 309
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=86.58 E-value=0.72 Score=28.30 Aligned_cols=28 Identities=7% Similarity=0.131 Sum_probs=23.0
Q ss_pred ccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 794 GNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 794 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
..+..+|.+|...|++++|++.+++...
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4578899999999999999998777654
No 310
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=86.55 E-value=1.1 Score=43.93 Aligned_cols=81 Identities=6% Similarity=-0.103 Sum_probs=62.2
Q ss_pred HHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchh
Q 002834 734 VDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDG 811 (875)
Q Consensus 734 ~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 811 (875)
++-|-++|+++||++.|.... ..| +++.+.+-..+|.+.+.+..|+.-...++.++..-..+|..-+.+-...|+..|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 456889999999999997764 667 888888999999999999999999999999876655555554444445555555
Q ss_pred HHH
Q 002834 812 VVE 814 (875)
Q Consensus 812 A~~ 814 (875)
|.+
T Consensus 184 AKk 186 (536)
T KOG4648|consen 184 AKK 186 (536)
T ss_pred HHH
Confidence 544
No 311
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.46 E-value=15 Score=34.10 Aligned_cols=145 Identities=16% Similarity=0.153 Sum_probs=89.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC----hhHHHHHH
Q 002834 659 LTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT----PEQYASLV 734 (875)
Q Consensus 659 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~ 734 (875)
.+.-++.+.+.+..++++...++-.+.. +.|..+-..++..++-.|++++|..-++-+.+ +.|+ ...|..++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~---l~p~~t~~a~lyr~li 79 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT---LSPQDTVGASLYRHLI 79 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhh---cCcccchHHHHHHHHH
Confidence 4455677888889999999988877752 44455566778889999999999988876654 4554 44666666
Q ss_pred HHhhcCCChHHHH-HHHHh--CC-CCC-CHHHHHHHH-HHHH--hcCChhHHHHHHHHHhcccCCCCccHH--HHHHHHH
Q 002834 735 DLLARGGQISDAY-SLVNR--MP-VEA-DCNVWGTLL-GACR--IHHEVELGRVVANRLFEMEADNIGNYV--VMSNLYA 804 (875)
Q Consensus 735 ~~~~~~g~~~~A~-~~~~~--~~-~~p-~~~~~~~l~-~~~~--~~~~~~~a~~~~~~~~~~~p~~~~~~~--~l~~~~~ 804 (875)
++ +.+. ++|.. .| +.- ....|...+ .+.. ..|.-+.+...-+++++..|..++... ..+|+--
T Consensus 80 r~-------ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG~~~gg~fawiaD 152 (273)
T COG4455 80 RC-------EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIGHADGGSFAWIAD 152 (273)
T ss_pred HH-------HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCcccCCcchhhhhh
Confidence 54 2222 22221 12 111 234565444 3333 334566677888888998887665422 2445544
Q ss_pred hcCCchhHHH
Q 002834 805 ADARWDGVVE 814 (875)
Q Consensus 805 ~~g~~~~A~~ 814 (875)
..++..-+++
T Consensus 153 sD~RlgpvlE 162 (273)
T COG4455 153 SDDRLGPVLE 162 (273)
T ss_pred cccccCcceE
Confidence 4555544444
No 312
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=86.41 E-value=8.5 Score=35.34 Aligned_cols=60 Identities=20% Similarity=0.211 Sum_probs=27.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh--hHHHHHHHHhhcCcHHHHHHHHHHhH
Q 002834 659 LTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHV--VITAVLSACSHAGLVDEGLEIFRSIE 718 (875)
Q Consensus 659 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~a~~~~g~~~~a~~~~~~~~ 718 (875)
+..+..-|++.|+.+.|++.|.++.+....|... .+..+++.+...+++..+.....++.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3344444455555555555555544433333322 23444444445555555555544443
No 313
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=86.32 E-value=0.93 Score=25.89 Aligned_cols=24 Identities=8% Similarity=0.070 Sum_probs=19.8
Q ss_pred ccHHHHHHHHHhcCCchhHHHHHH
Q 002834 794 GNYVVMSNLYAADARWDGVVEIRK 817 (875)
Q Consensus 794 ~~~~~l~~~~~~~g~~~~A~~~~~ 817 (875)
.....|+.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356788999999999999998764
No 314
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=86.28 E-value=7.3 Score=33.02 Aligned_cols=71 Identities=13% Similarity=0.067 Sum_probs=42.0
Q ss_pred CCChhHHHHHHHHhhcCCChH---HHHHHHHhCC--CCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCc
Q 002834 724 KPTPEQYASLVDLLARGGQIS---DAYSLVNRMP--VEADC--NVWGTLLGACRIHHEVELGRVVANRLFEMEADNIG 794 (875)
Q Consensus 724 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~--~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 794 (875)
.++..+--.+..++.+..+.+ +.+.++++.- ..|+. .....|.-++.+.|+++++.+....+++.+|+|..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 555566666777777666543 3445555542 23322 33444555566777777777777777777776543
No 315
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=86.22 E-value=23 Score=37.11 Aligned_cols=64 Identities=14% Similarity=0.201 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCC----CCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 758 DCNVWGTLLGACRIHHEVELGRVVANRLFEMEAD----NIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 758 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
...+|..+...|+++|+++.|..++.++...++. .|...+..+.++...|+..+|+..++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4477999999999999999999999999987632 466777789999999999999998777665
No 316
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=86.09 E-value=7.2 Score=38.39 Aligned_cols=77 Identities=22% Similarity=0.336 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHH----HhCCCCChhHHHHH
Q 002834 658 MLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEK----VQGIKPTPEQYASL 733 (875)
Q Consensus 658 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~~~l 733 (875)
++..++..+...|+.+.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+++.+ +.|+.|........
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45556666677777777777777777642 44566677777777777777777777766654 24566655554443
Q ss_pred HH
Q 002834 734 VD 735 (875)
Q Consensus 734 ~~ 735 (875)
..
T Consensus 234 ~~ 235 (280)
T COG3629 234 EE 235 (280)
T ss_pred HH
Confidence 33
No 317
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=86.00 E-value=9.9 Score=34.91 Aligned_cols=60 Identities=17% Similarity=0.039 Sum_probs=45.7
Q ss_pred chHHHHHHHHhHhcCCHHHHHHHhccCCCCC------hhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002834 625 VRLNGALLHLYAKCGSIFSASKIFQCHPQKD------VVMLTAMIGGYAMHGMGKAALKVFSDMLE 684 (875)
Q Consensus 625 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 684 (875)
...+..+.+.|.+.|+.+.|.+.|.++.+.. +..+-.+|......+++..+...+.+...
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4566788888899999999999888877632 24566777777888888888888777665
No 318
>PRK10941 hypothetical protein; Provisional
Probab=85.99 E-value=4.2 Score=40.07 Aligned_cols=82 Identities=13% Similarity=0.096 Sum_probs=64.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhCCCcCCCceeEEEeCCEEeE
Q 002834 762 WGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTRDLKKPAACSWIEVERKNNA 841 (875)
Q Consensus 762 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 841 (875)
.+++-.++...++++.|.++.+.++.+.|++|.-+---|-+|++.|.+..|..=++...++. |
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~----P------------- 246 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC----P------------- 246 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC----C-------------
Confidence 45666788899999999999999999999999888889999999999999999666544321 1
Q ss_pred EecCCCCCCChHHHHHHHHHHHHHH
Q 002834 842 FMAGDYSHPRRDMIYWVLSILDEQI 866 (875)
Q Consensus 842 f~~~~~~~~~~~~~~~~~~~l~~~~ 866 (875)
.-|.+..|...++.|..+.
T Consensus 247 ------~dp~a~~ik~ql~~l~~~~ 265 (269)
T PRK10941 247 ------EDPISEMIRAQIHSIEQKQ 265 (269)
T ss_pred ------CchhHHHHHHHHHHHhhcC
Confidence 2466677777777765543
No 319
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=85.91 E-value=26 Score=31.55 Aligned_cols=35 Identities=6% Similarity=0.098 Sum_probs=19.6
Q ss_pred HHHHhCCCCCcchhhHHHHHhHhcCChhHHHHHhc
Q 002834 171 YVIKFGLERHTLVGNSLTSMYAKRGLVHDAYSVFD 205 (875)
Q Consensus 171 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 205 (875)
.+.+.++.|+...+..+|+.+.+.|.+.....++.
T Consensus 19 Sl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq 53 (167)
T PF07035_consen 19 SLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ 53 (167)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 34445566666666666666666665544444443
No 320
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=85.59 E-value=53 Score=35.00 Aligned_cols=159 Identities=11% Similarity=0.128 Sum_probs=82.8
Q ss_pred HHHHHHHhHhcCCHHHHHHHhccCCC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcC
Q 002834 628 NGALLHLYAKCGSIFSASKIFQCHPQ--KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAG 705 (875)
Q Consensus 628 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g 705 (875)
..++++.++..-+..-.+.+..++.. .+-..|..++.+|..+ ..++-..+|+++.+. .-|.+.+...+..+...+
T Consensus 69 l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~--dfnDvv~~ReLa~~yEki 145 (711)
T COG1747 69 LVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEY--DFNDVVIGRELADKYEKI 145 (711)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--cchhHHHHHHHHHHHHHh
Confidence 33444455444444444444444433 3445566777777776 556667777777663 444555555555455557
Q ss_pred cHHHHHHHHHHhHHHhCCCCC------hhHHHHHHHHhhcCCChHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCh
Q 002834 706 LVDEGLEIFRSIEKVQGIKPT------PEQYASLVDLLARGGQISDAYSLVNRMP----VEADCNVWGTLLGACRIHHEV 775 (875)
Q Consensus 706 ~~~~a~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~l~~~~~~~~~~ 775 (875)
+.+.+..+|.++... +-|. .+.|.-+.... ..+.+....+..++. ..--.+.+..+-.-|....|+
T Consensus 146 k~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~ 221 (711)
T COG1747 146 KKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENW 221 (711)
T ss_pred chhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCH
Confidence 777777777776542 2331 12344333321 234444455544442 111223333333445555677
Q ss_pred hHHHHHHHHHhcccCCCC
Q 002834 776 ELGRVVANRLFEMEADNI 793 (875)
Q Consensus 776 ~~a~~~~~~~~~~~p~~~ 793 (875)
+.|+++.+.+++.+.+|.
T Consensus 222 ~eai~Ilk~il~~d~k~~ 239 (711)
T COG1747 222 TEAIRILKHILEHDEKDV 239 (711)
T ss_pred HHHHHHHHHHhhhcchhh
Confidence 777777777666665543
No 321
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=84.90 E-value=1.7 Score=25.63 Aligned_cols=30 Identities=10% Similarity=0.010 Sum_probs=17.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhcccCC
Q 002834 762 WGTLLGACRIHHEVELGRVVANRLFEMEAD 791 (875)
Q Consensus 762 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 791 (875)
|..+...+...++++.|+..++++++.+|.
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 444555555556666666666666665553
No 322
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=84.86 E-value=3.4 Score=40.57 Aligned_cols=61 Identities=13% Similarity=0.163 Sum_probs=43.2
Q ss_pred hHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 002834 728 EQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEM 788 (875)
Q Consensus 728 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 788 (875)
.++..++..+...|+.+.+...+++.. ..| +...|..++.+|...|+...|+..|+++-.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 466667777777777777777777763 344 6677777777777777777777777776654
No 323
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=84.81 E-value=1.9 Score=40.33 Aligned_cols=86 Identities=13% Similarity=0.110 Sum_probs=51.9
Q ss_pred HHhhcCcHHHHHHHHHHhHHHhCCCCChh-HHHHHHHHhhcCCChHHHHHHHHhC-CCCCCHHHHHHHHHHHH-hcCChh
Q 002834 700 ACSHAGLVDEGLEIFRSIEKVQGIKPTPE-QYASLVDLLARGGQISDAYSLVNRM-PVEADCNVWGTLLGACR-IHHEVE 776 (875)
Q Consensus 700 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~-~~~~~~ 776 (875)
.|.....++.|...+.+... +.|+.. .|..-+.++.+..+|+.+..-.... .+.||..--..+++.+. ....++
T Consensus 19 k~f~~k~y~~ai~~y~raI~---~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAIC---INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred cccchhhhchHHHHHHHHHh---cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 45555666777776665544 666653 4555666666677777666554444 36666655555555543 345677
Q ss_pred HHHHHHHHHhcc
Q 002834 777 LGRVVANRLFEM 788 (875)
Q Consensus 777 ~a~~~~~~~~~~ 788 (875)
.|+..+.++..+
T Consensus 96 eaI~~Lqra~sl 107 (284)
T KOG4642|consen 96 EAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHHH
Confidence 777777776554
No 324
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=84.79 E-value=23 Score=30.02 Aligned_cols=63 Identities=11% Similarity=0.201 Sum_probs=42.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCC
Q 002834 659 LTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGI 723 (875)
Q Consensus 659 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 723 (875)
....+..+...|+-++-.+++..+.+. -+|++.....+..||.+.|+..++.+++.++.+ .|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe-kG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACE-KGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH-hch
Confidence 445566777888888888888887753 477777888888888888988888888888877 454
No 325
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.37 E-value=7.8 Score=38.01 Aligned_cols=92 Identities=9% Similarity=0.070 Sum_probs=68.0
Q ss_pred CchHHHHHHHHhHhcCCHHHHHHHhccCCC-CC--------hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhH
Q 002834 624 GVRLNGALLHLYAKCGSIFSASKIFQCHPQ-KD--------VVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVI 694 (875)
Q Consensus 624 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 694 (875)
.......++..-....+++++...+-+++. |+ ..+| ++.+. .=++++++.++..=++.|+-||.+++
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~---irlll-ky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTW---IRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHH---HHHHH-ccChHHHHHHHhCcchhccccchhhH
Confidence 444445555555666778888877776654 22 2233 23222 33788999999999999999999999
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHhHH
Q 002834 695 TAVLSACSHAGLVDEGLEIFRSIEK 719 (875)
Q Consensus 695 ~~ll~a~~~~g~~~~a~~~~~~~~~ 719 (875)
+.++..+.+.+++.+|.++...|..
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHH
Confidence 9999999999999999998887765
No 326
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=84.05 E-value=1.8 Score=26.17 Aligned_cols=26 Identities=12% Similarity=0.156 Sum_probs=13.9
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 796 YVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 796 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
+..+|++|...|++++|.+.++.+.+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34455555555555555555555443
No 327
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.68 E-value=21 Score=31.09 Aligned_cols=64 Identities=14% Similarity=0.122 Sum_probs=33.0
Q ss_pred cCcHHHHHHHHHHhHHHhCCCCChh-HHHHHHHHhhcCCChHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 002834 704 AGLVDEGLEIFRSIEKVQGIKPTPE-QYASLVDLLARGGQISDAYSLVNRMPVEA-DCNVWGTLLGACR 770 (875)
Q Consensus 704 ~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~ 770 (875)
.++.+++..+++.|.- +.|+.. .-..-+..+...|+|+||..++++....+ ....-..|+..|.
T Consensus 23 ~~d~~D~e~lLdALrv---LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL 88 (153)
T TIGR02561 23 SADPYDAQAMLDALRV---LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCL 88 (153)
T ss_pred cCCHHHHHHHHHHHHH---hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHH
Confidence 5666666666666643 445432 22223344556667777777766665332 3333344444443
No 328
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=83.62 E-value=51 Score=33.07 Aligned_cols=18 Identities=6% Similarity=-0.184 Sum_probs=11.9
Q ss_pred HHHHcCChHHHHHHHHHH
Q 002834 665 GYAMHGMGKAALKVFSDM 682 (875)
Q Consensus 665 ~~~~~g~~~~A~~~~~~m 682 (875)
.+.+.++++.|.++|+-.
T Consensus 255 ~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHhhcCHHHHHHHHHHH
Confidence 344567788888777643
No 329
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=83.52 E-value=92 Score=35.91 Aligned_cols=199 Identities=13% Similarity=0.041 Sum_probs=106.9
Q ss_pred CchHHHHHHHHhHhcCCHHHHHHHhccCC----CCCh-------hhHHHHHHHH-HHcCChHHHHHHHHHHHHC----CC
Q 002834 624 GVRLNGALLHLYAKCGSIFSASKIFQCHP----QKDV-------VMLTAMIGGY-AMHGMGKAALKVFSDMLEL----GV 687 (875)
Q Consensus 624 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~-------~~~~~li~~~-~~~g~~~~A~~~~~~m~~~----g~ 687 (875)
++...-.-+.......++.+|..++.+.. .|+. ..|+.+-... ...|++++|+++.+..... -.
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 33444444455566777888777776533 2221 2455554333 3567888888888877664 11
Q ss_pred CCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHH-----HHHhhcCCC--hHHHHHHHHhC-----CC
Q 002834 688 NPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASL-----VDLLARGGQ--ISDAYSLVNRM-----PV 755 (875)
Q Consensus 688 ~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l-----~~~~~~~g~--~~~A~~~~~~~-----~~ 755 (875)
.+..+.+..+..+..-.|++++|..+.++..+. .-.-+..++..+ ...+..+|. +.+....+... ..
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q 572 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQ 572 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence 222344455555777788999998888777653 122233333322 244566773 22222222222 12
Q ss_pred CCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhccc----CCCCc---cHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 002834 756 EADC-NVWGTLLGACRIHHEVELGRVVANRLFEME----ADNIG---NYVVMSNLYAADARWDGVVEIRKLMKTRD 823 (875)
Q Consensus 756 ~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 823 (875)
.|-. ......+..++.+-+.+.+...+.+.++.. |..-. .+..|+.++...|+.++|......+....
T Consensus 573 ~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~ 648 (894)
T COG2909 573 KPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLL 648 (894)
T ss_pred cccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 2321 122222223333333566665555555543 33221 22367888999999999998877776543
No 330
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=83.20 E-value=6.6 Score=27.29 Aligned_cols=50 Identities=4% Similarity=0.013 Sum_probs=38.2
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHhCCCcCCCceeEEEeCCEEeEEecCCCCCCChHHHHHHHHHHHHHHHhcCC
Q 002834 796 YVVMSNLYAADARWDGVVEIRKLMKTRDLKKPAACSWIEVERKNNAFMAGDYSHPRRDMIYWVLSILDEQIKDQVT 871 (875)
Q Consensus 796 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 871 (875)
+..++-.+.+.|++++|.+..+.+.+ .+|...+.....+.+..+|.++|.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~--------------------------~eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLE--------------------------IEPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH--------------------------HTTS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------hCCCcHHHHHHHHHHHHHHhccCC
Confidence 45678889999999999998777654 247777777788888889988884
No 331
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=83.06 E-value=1.7 Score=26.80 Aligned_cols=28 Identities=21% Similarity=0.197 Sum_probs=13.0
Q ss_pred HHHhcCCCchHHHHHHHHhHhcCCHHHH
Q 002834 617 VIRACFDGVRLNGALLHLYAKCGSIFSA 644 (875)
Q Consensus 617 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A 644 (875)
+++..|.+...+..+...|...|++++|
T Consensus 5 Aie~~P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 5 AIELNPNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence 3334444444444444444444444444
No 332
>PRK12798 chemotaxis protein; Reviewed
Probab=82.99 E-value=64 Score=33.71 Aligned_cols=165 Identities=18% Similarity=0.200 Sum_probs=109.5
Q ss_pred cCCHHHHHHHhccCCC----CChhhHHHHHHHHH-HcCChHHHHHHHHHHHHCCCCCChh----hHHHHHHHHhhcCcHH
Q 002834 638 CGSIFSASKIFQCHPQ----KDVVMLTAMIGGYA-MHGMGKAALKVFSDMLELGVNPDHV----VITAVLSACSHAGLVD 708 (875)
Q Consensus 638 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~a~~~~g~~~ 708 (875)
.|+.++|.+.+..+.. +....|-.|+.+-. ...+..+|+++|++..- .-|-.. ....-+-.....|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 6899999999988765 34556777776644 45689999999999876 345432 2333444567889999
Q ss_pred HHHHHHHHhHHHhCCCCChhHHH-HHHHHhhcC---CChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 002834 709 EGLEIFRSIEKVQGIKPTPEQYA-SLVDLLARG---GQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANR 784 (875)
Q Consensus 709 ~a~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~---g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 784 (875)
++..+-.+-.+.|...|=...|. .++..+.+. -+.+.-..++..|.-.-...+|..+...-...|+.+.|..+.++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 98888777777676666544333 233333333 23444445566653222346777777888889999999999999
Q ss_pred HhcccCCCCccHHHHHHHHHh
Q 002834 785 LFEMEADNIGNYVVMSNLYAA 805 (875)
Q Consensus 785 ~~~~~p~~~~~~~~l~~~~~~ 805 (875)
+..+.+. ...-...+.+|..
T Consensus 283 A~~L~~~-~~~~~~ra~LY~a 302 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRG 302 (421)
T ss_pred HHHhccC-CCcchHHHHHHHH
Confidence 9999744 3333344455544
No 333
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.85 E-value=59 Score=36.52 Aligned_cols=81 Identities=11% Similarity=0.112 Sum_probs=40.0
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhc-CCchhHHHHH
Q 002834 742 QISDAYSLVNRMPVEADCNVWGTLLGACR----IHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAAD-ARWDGVVEIR 816 (875)
Q Consensus 742 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~ 816 (875)
+...|.+++..............+...+. ...+.+.|...++++.+.+ ++.+...++..|.-. ++++.+.-.+
T Consensus 343 d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~ 420 (552)
T KOG1550|consen 343 DYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALY 420 (552)
T ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHH
Confidence 44566666666543333322222222221 1236667777777776666 334344444433332 6666666655
Q ss_pred HHHHhCCC
Q 002834 817 KLMKTRDL 824 (875)
Q Consensus 817 ~~~~~~~~ 824 (875)
..+++.|.
T Consensus 421 ~~~a~~g~ 428 (552)
T KOG1550|consen 421 LYLAELGY 428 (552)
T ss_pred HHHHHhhh
Confidence 55555443
No 334
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=82.57 E-value=1.4 Score=26.75 Aligned_cols=26 Identities=12% Similarity=-0.054 Sum_probs=20.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhc
Q 002834 762 WGTLLGACRIHHEVELGRVVANRLFE 787 (875)
Q Consensus 762 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 787 (875)
+-.+..++...|+.+.|.+.++++++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44566777889999999999998763
No 335
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=82.38 E-value=2.2 Score=44.48 Aligned_cols=83 Identities=12% Similarity=0.073 Sum_probs=45.2
Q ss_pred hhcCCChHHHHHHHHhCC-CCCCHHHH-HHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHH
Q 002834 737 LARGGQISDAYSLVNRMP-VEADCNVW-GTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVE 814 (875)
Q Consensus 737 ~~~~g~~~~A~~~~~~~~-~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 814 (875)
+...+.++.|..++.++. .+|+...+ ..-..++.+.+++..|..-+-++++++|.....|+.-|..+.+.+++.+|+.
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~ 93 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALL 93 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHH
Confidence 334455555555555543 45544322 2222444555666666666666666666666666666666666666666666
Q ss_pred HHHHH
Q 002834 815 IRKLM 819 (875)
Q Consensus 815 ~~~~~ 819 (875)
.++..
T Consensus 94 ~l~~~ 98 (476)
T KOG0376|consen 94 DLEKV 98 (476)
T ss_pred HHHHh
Confidence 55443
No 336
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=81.16 E-value=4.7 Score=42.98 Aligned_cols=125 Identities=10% Similarity=0.033 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCCh--hHHHHHHHHhhcCCChHHHHHHHH
Q 002834 674 AALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTP--EQYASLVDLLARGGQISDAYSLVN 751 (875)
Q Consensus 674 ~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~ 751 (875)
-+-.++.-|.. .+-|-...++...--....|+...|...+..+.- ..|.. .....|.+.+.+.|...+|-.++.
T Consensus 591 ~~~~~~~~~~~-~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~ 666 (886)
T KOG4507|consen 591 IGSFLFHAINK-PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLL 666 (886)
T ss_pred HHHHHHHHhcC-CCCCeEEEeecccceeeecCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHH
Confidence 34444444432 2334333333222233457899999999987744 55542 356678888888999899998887
Q ss_pred hCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHH
Q 002834 752 RMP--VEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNL 802 (875)
Q Consensus 752 ~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 802 (875)
+.. ....+.+...+.+++....|++.|++.++++++++|+++..-..|-.+
T Consensus 667 q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 667 QALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 763 333456677788888899999999999999999999999876655444
No 337
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=81.13 E-value=2.3 Score=26.05 Aligned_cols=28 Identities=11% Similarity=0.214 Sum_probs=23.9
Q ss_pred ccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 794 GNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 794 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
.+|..+|.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3578899999999999999998877543
No 338
>PRK11619 lytic murein transglycosylase; Provisional
Probab=80.25 E-value=1.2e+02 Score=34.85 Aligned_cols=396 Identities=8% Similarity=-0.101 Sum_probs=187.1
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHhcCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCc
Q 002834 391 VGNALVSFYAKCSDMEAAYRTFLMICRRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLR 470 (875)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 470 (875)
.-...+..+.+.+++....+ |..-...+...-.....+....|+.++|....+.+-..|. .....+..++..+.+.|.
T Consensus 101 Lr~~~l~~La~~~~w~~~~~-~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g~ 178 (644)
T PRK11619 101 LQSRFVNELARREDWRGLLA-FSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSGK 178 (644)
T ss_pred HHHHHHHHHHHccCHHHHHH-hcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcCC
Confidence 44555556666777777777 3322234555556677788888888888777777655552 234445555555443332
Q ss_pred hhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcccHHHHHHHhhcCCChHHHHHHHHh
Q 002834 471 EGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFMTFSR 550 (875)
Q Consensus 471 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~ 550 (875)
. +....-.-+......|+...|..+...+... .......++..+. +...+...+..
T Consensus 179 l--------------------t~~d~w~R~~~al~~~~~~lA~~l~~~l~~~-~~~~a~a~~al~~---~p~~~~~~~~~ 234 (644)
T PRK11619 179 Q--------------------DPLAYLERIRLAMKAGNTGLVTYLAKQLPAD-YQTIASALIKLQN---DPNTVETFART 234 (644)
T ss_pred C--------------------CHHHHHHHHHHHHHCCCHHHHHHHHHhcChh-HHHHHHHHHHHHH---CHHHHHHHhhc
Confidence 2 2212222334444556666666666555221 1112222333222 22222222222
Q ss_pred hhcCCCcc--HHHHHHHHHHcCCchHHHHHHHHHHHCC-CCCCcch--HhcHHHHhhcccchHHHHHHHHHHHHhcCCCc
Q 002834 551 IYARDLTP--WNLMIRVYAENDFPNQALSLFLKLQAQG-MKPDAVT--IMSLLPVCSQMASVHLLRQCHGYVIRACFDGV 625 (875)
Q Consensus 551 ~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~--~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~ 625 (875)
.. ++... +..+.-.-....+.+.|..++....... ..+.... ...+.......+..+.+...++...... .+.
T Consensus 235 ~~-~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~-~~~ 312 (644)
T PRK11619 235 TG-PTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS-QST 312 (644)
T ss_pred cC-CChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc-CCc
Confidence 11 11111 1111111223455677888887764432 2222111 1111111111100222222222221111 133
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHhccCCC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHh
Q 002834 626 RLNGALLHLYAKCGSIFSASKIFQCHPQ--K-DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACS 702 (875)
Q Consensus 626 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~ 702 (875)
.+...-+....+.++.+.+...+..++. . ...-..=+..++...|+.++|...|+++.. . .+|..++.+-
T Consensus 313 ~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~---~~fYG~LAa~- 385 (644)
T PRK11619 313 SLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---Q---RGFYPMVAAQ- 385 (644)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---C---CCcHHHHHHH-
Confidence 3344444555577777777777777654 1 112222355665667888888888777632 1 2344443321
Q ss_pred hcCcHHH-HHHHHH-HhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 002834 703 HAGLVDE-GLEIFR-SIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRV 780 (875)
Q Consensus 703 ~~g~~~~-a~~~~~-~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 780 (875)
+.|..-. ...... .... ..-. .-..-+..+...|+..+|...+..+....+......+.......|..+.++.
T Consensus 386 ~Lg~~~~~~~~~~~~~~~~-~~~~----~~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~ 460 (644)
T PRK11619 386 RLGEEYPLKIDKAPKPDSA-LTQG----PEMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQ 460 (644)
T ss_pred HcCCCCCCCCCCCCchhhh-hccC----hHHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 1121100 000000 0000 0000 1122345667789999999888776544555555666666678889899888
Q ss_pred HHHHHhccc---CCCCccHHHHHHHHHhcCCchhHHHHHHHHHhCCCcC
Q 002834 781 VANRLFEME---ADNIGNYVVMSNLYAADARWDGVVEIRKLMKTRDLKK 826 (875)
Q Consensus 781 ~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 826 (875)
+..+....+ -..|..|.-...-+...-..+.+.-.-=..+|.+..+
T Consensus 461 ~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p 509 (644)
T PRK11619 461 ATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSYAMAIARQESAWNP 509 (644)
T ss_pred HHhhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCC
Confidence 876553321 1234445555555555556666654322223555443
No 339
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.11 E-value=11 Score=40.61 Aligned_cols=148 Identities=17% Similarity=0.155 Sum_probs=86.9
Q ss_pred cCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHh
Q 002834 638 CGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSI 717 (875)
Q Consensus 638 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 717 (875)
.|+++.|..++..++++. .+.++.-+-+.|..++|+++- ..||. -| ....+.|+++.|.++..+.
T Consensus 599 rrd~~~a~~vLp~I~k~~---rt~va~Fle~~g~~e~AL~~s-------~D~d~-rF----elal~lgrl~iA~~la~e~ 663 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPKEI---RTKVAHFLESQGMKEQALELS-------TDPDQ-RF----ELALKLGRLDIAFDLAVEA 663 (794)
T ss_pred hccccccccccccCchhh---hhhHHhHhhhccchHhhhhcC-------CChhh-hh----hhhhhcCcHHHHHHHHHhh
Confidence 566777766666665322 344555556666666665432 12222 11 2234677788877766544
Q ss_pred HHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHH
Q 002834 718 EKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYV 797 (875)
Q Consensus 718 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 797 (875)
. +..-|..|.++...+|++..|.+.+.... -|..|+-.+...|+-+.-..+...+-+....|..
T Consensus 664 ~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~A--- 727 (794)
T KOG0276|consen 664 N-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLA--- 727 (794)
T ss_pred c-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccchH---
Confidence 2 24467788888888888888888777653 3555666666666666544444444333333322
Q ss_pred HHHHHHHhcCCchhHHHHHHH
Q 002834 798 VMSNLYAADARWDGVVEIRKL 818 (875)
Q Consensus 798 ~l~~~~~~~g~~~~A~~~~~~ 818 (875)
-..|...|++++.++++-.
T Consensus 728 --F~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 728 --FLAYFLSGDYEECLELLIS 746 (794)
T ss_pred --HHHHHHcCCHHHHHHHHHh
Confidence 2356777888888887643
No 340
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=79.40 E-value=55 Score=33.09 Aligned_cols=51 Identities=12% Similarity=0.076 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhc--cC----ChhhHHHHHHHHHhcCC
Q 002834 333 WLKALNLFCELITKEMIWPDSVTLVSLLPACAY--LK----NLKVGKEIHGYFLRHPY 384 (875)
Q Consensus 333 ~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~ 384 (875)
+++.+.+++.|.+.| ++-+..+|.+....... .. ....++.+++.|.+...
T Consensus 78 ~~~~~~~y~~L~~~g-Fk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~ 134 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAG-FKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHP 134 (297)
T ss_pred HHHHHHHHHHHHHhc-cCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCc
Confidence 456677888888888 88888887764444333 12 23456677777776654
No 341
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=79.29 E-value=69 Score=31.70 Aligned_cols=82 Identities=18% Similarity=0.254 Sum_probs=47.4
Q ss_pred CchHHHHHHHHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhh
Q 002834 624 GVRLNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSH 703 (875)
Q Consensus 624 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~ 703 (875)
++.+...+...|.+.|++.+|+..|-....++...+-.++......|...++ |...-..++. |..
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL~-yL~ 153 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVLQ-YLC 153 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHHH-HHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHHH-HHH
Confidence 8899999999999999999999988665543333332222222222222211 2222233333 556
Q ss_pred cCcHHHHHHHHHHhHHH
Q 002834 704 AGLVDEGLEIFRSIEKV 720 (875)
Q Consensus 704 ~g~~~~a~~~~~~~~~~ 720 (875)
.++...|...++...+.
T Consensus 154 l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 154 LGNLRDANELFDTFTSK 170 (260)
T ss_dssp TTBHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHH
Confidence 67888888888777653
No 342
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=79.04 E-value=26 Score=31.76 Aligned_cols=61 Identities=18% Similarity=0.309 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhhcC----c-------HHHHHHHHHHhHHHhCCCCChhHHHHHHHHh
Q 002834 672 GKAALKVFSDMLELGVNPDH-VVITAVLSACSHAG----L-------VDEGLEIFRSIEKVQGIKPTPEQYASLVDLL 737 (875)
Q Consensus 672 ~~~A~~~~~~m~~~g~~p~~-~~~~~ll~a~~~~g----~-------~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 737 (875)
+++|++-|++.+. +.|+. .++..+..++...+ + +++|.++|+++.. .+|+...|..-++..
T Consensus 51 iedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~---~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 51 IEDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD---EDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH---H-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh---cCCCcHHHHHHHHHH
Confidence 4556666666666 67774 56666666665543 2 4555555555544 678888887766654
No 343
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=78.85 E-value=15 Score=29.14 Aligned_cols=61 Identities=20% Similarity=0.333 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHH
Q 002834 672 GKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLV 734 (875)
Q Consensus 672 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 734 (875)
.-++.+-++.+....+.|+.....+.++||.+.+|+..|.++|+..+.. ...+...|..++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K--~~~~~~~y~~~l 83 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK--CGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccCchhhHHHHH
Confidence 3456666777777788999999999999999999999999999888653 222334555544
No 344
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=78.62 E-value=79 Score=31.99 Aligned_cols=130 Identities=9% Similarity=-0.078 Sum_probs=69.7
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhh----cCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCC-----
Q 002834 671 MGKAALKVFSDMLELGVNPDHVVITAVLSACSH----AGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGG----- 741 (875)
Q Consensus 671 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g----- 741 (875)
+..+|..+|..+.+.|..+-... +...+.. ..+..+|..+|+++.+ .|..+-......+...|...+
T Consensus 92 ~~~~A~~~~~~~a~~g~~~a~~~---lg~~~~~G~gv~~d~~~A~~~~~~Aa~-~g~~~a~~~~~~l~~~~~~g~~~~~~ 167 (292)
T COG0790 92 DKTKAADWYRCAAADGLAEALFN---LGLMYANGRGVPLDLVKALKYYEKAAK-LGNVEAALAMYRLGLAYLSGLQALAV 167 (292)
T ss_pred cHHHHHHHHHHHhhcccHHHHHh---HHHHHhcCCCcccCHHHHHHHHHHHHH-cCChhHHHHHHHHHHHHHcChhhhcc
Confidence 46667777776666553222222 2222222 3377777777777766 444443222333444443321
Q ss_pred --ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcC
Q 002834 742 --QISDAYSLVNRMPVEADCNVWGTLLGACRI----HHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADA 807 (875)
Q Consensus 742 --~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 807 (875)
....|..++.++...-++.....+...|.. ..|.++|...++++-+... +.....++ ++...|
T Consensus 168 ~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 168 AYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred cHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 223677777766423333333333333321 2378888888888888776 55566666 666555
No 345
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=78.17 E-value=13 Score=29.44 Aligned_cols=46 Identities=13% Similarity=0.138 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHHH
Q 002834 438 QFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIK 483 (875)
Q Consensus 438 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 483 (875)
++.+-++.+....+-|+.....+.+++|.+.+++..|.++++-++.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4555566666677888888898999999998888888888887763
No 346
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=77.70 E-value=4.7 Score=31.94 Aligned_cols=41 Identities=5% Similarity=0.127 Sum_probs=31.0
Q ss_pred HHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHH
Q 002834 779 RVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLM 819 (875)
Q Consensus 779 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 819 (875)
...+++.++.+|+|....+.++..+...|++++|++.+-.+
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~ 48 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLEL 48 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 45677788888888888888888889999999988854444
No 347
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.39 E-value=1.3e+02 Score=35.42 Aligned_cols=178 Identities=17% Similarity=0.201 Sum_probs=86.3
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhH--
Q 002834 559 WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYA-- 636 (875)
Q Consensus 559 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-- 636 (875)
|..|+..|...|.+++|+++|.+..+.--.-|. +. .+.-..+.+++.+.+.++. .++..|.
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~-~~------------~~~~e~ii~YL~~l~~~~~----~Li~~y~~w 569 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDS-FQ------------LDGLEKIIEYLKKLGAENL----DLILEYADW 569 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhcccccccc-ch------------hhhHHHHHHHHHHhcccch----hHHHHHhhh
Confidence 788888889999999999999888753100111 10 1111123333333333311 1111111
Q ss_pred -hcCCHHHHHHHhccCCCCChhhHH-HHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhc--------Cc
Q 002834 637 -KCGSIFSASKIFQCHPQKDVVMLT-AMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHA--------GL 706 (875)
Q Consensus 637 -~~g~~~~A~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~--------g~ 706 (875)
-..+.+...++|..-......+.+ .-+-.|......+-++..++.+....-.++....+.++..|... ++
T Consensus 570 vl~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~k 649 (877)
T KOG2063|consen 570 VLNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGK 649 (877)
T ss_pred hhccCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhc
Confidence 123344444555441110111111 12334555667777788888887765556666666666655432 11
Q ss_pred HHHHHHH-----HHHhHHH-hCCCCC--------hhHHHHHHHHhhcCCChHHHHHHHHhC
Q 002834 707 VDEGLEI-----FRSIEKV-QGIKPT--------PEQYASLVDLLARGGQISDAYSLVNRM 753 (875)
Q Consensus 707 ~~~a~~~-----~~~~~~~-~~~~p~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 753 (875)
-+++.+. +..+.+. ....|. ...|.-..-.+.|.|+.++|+.++-..
T Consensus 650 g~e~~E~~~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~ 710 (877)
T KOG2063|consen 650 GEEAPETTVREKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHE 710 (877)
T ss_pred cccchhhhHHHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 1222222 1111110 122222 234444455566888888888776554
No 348
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=77.08 E-value=14 Score=38.47 Aligned_cols=111 Identities=16% Similarity=0.167 Sum_probs=57.7
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC--C
Q 002834 678 VFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP--V 755 (875)
Q Consensus 678 ~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~ 755 (875)
++..+....-.|+.+...+. .+.+.|+++.+.+.+..... -+-....+..+++.-+...|++++|...-+.|. .
T Consensus 312 ~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~e 387 (831)
T PRK15180 312 LFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNE 387 (831)
T ss_pred HHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccc
Confidence 33444443334444433333 34566677777666655533 133334466666666666777777776666653 1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCC
Q 002834 756 EADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADN 792 (875)
Q Consensus 756 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 792 (875)
..++.+...-.+.....|-++++...+++++.+.|..
T Consensus 388 ie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 388 IEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred cCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 1222222222333344455666666677777666553
No 349
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=76.82 E-value=5.9 Score=25.50 Aligned_cols=27 Identities=26% Similarity=0.463 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002834 658 MLTAMIGGYAMHGMGKAALKVFSDMLE 684 (875)
Q Consensus 658 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 684 (875)
+++.|...|...|++++|+.++++...
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 455666666666666666666665543
No 350
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.79 E-value=1.6 Score=43.25 Aligned_cols=86 Identities=10% Similarity=0.086 Sum_probs=52.2
Q ss_pred CCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHH
Q 002834 740 GGQISDAYSLVNRMP-VEAD-CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRK 817 (875)
Q Consensus 740 ~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 817 (875)
.|.+++|++.+.... ..|. ...+..-..++.+.+....|++-+..+++++|+....|-.-+......|+|++|.+.+.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 345555555555543 3332 23344444455566666667777777777777777777777777777777777777665
Q ss_pred HHHhCCCc
Q 002834 818 LMKTRDLK 825 (875)
Q Consensus 818 ~~~~~~~~ 825 (875)
..-..+..
T Consensus 207 ~a~kld~d 214 (377)
T KOG1308|consen 207 LACKLDYD 214 (377)
T ss_pred HHHhcccc
Confidence 55554443
No 351
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=76.65 E-value=15 Score=29.40 Aligned_cols=60 Identities=18% Similarity=0.352 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHH
Q 002834 674 AALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVD 735 (875)
Q Consensus 674 ~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 735 (875)
+..+-++.+....+.|++....+.+.||.+.+++..|.++|+.++..-+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 5556677777778899999999999999999999999999998877433 33336666543
No 352
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=76.15 E-value=29 Score=32.88 Aligned_cols=81 Identities=11% Similarity=-0.048 Sum_probs=39.3
Q ss_pred hHhcCCHHHHHHHhccCCC--CCh-hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHH-HHhhcCcHHHH
Q 002834 635 YAKCGSIFSASKIFQCHPQ--KDV-VMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLS-ACSHAGLVDEG 710 (875)
Q Consensus 635 ~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~-a~~~~g~~~~a 710 (875)
|....++..|...|.+... |.+ .-|+.-+.++.+..+++.+.+=-.+.++ +.||.+--...+. +......+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 3334445555555554332 443 2334455555555555555555544444 4555443333333 44445555555
Q ss_pred HHHHHHh
Q 002834 711 LEIFRSI 717 (875)
Q Consensus 711 ~~~~~~~ 717 (875)
+..+.+.
T Consensus 98 I~~Lqra 104 (284)
T KOG4642|consen 98 IKVLQRA 104 (284)
T ss_pred HHHHHHH
Confidence 5555555
No 353
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.52 E-value=67 Score=29.61 Aligned_cols=53 Identities=11% Similarity=-0.021 Sum_probs=25.5
Q ss_pred HHhHhcCCHHHHHHHhccCCCCChhh--HHHHHHHHHHcCChHHHHHHHHHHHHC
Q 002834 633 HLYAKCGSIFSASKIFQCHPQKDVVM--LTAMIGGYAMHGMGKAALKVFSDMLEL 685 (875)
Q Consensus 633 ~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~ 685 (875)
......|.+++|+..++....++-.. -..-...+...|+-++|..-|++..+.
T Consensus 134 rvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 134 RVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 34444555555555555554443221 112224455555555555555555554
No 354
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=75.30 E-value=86 Score=30.68 Aligned_cols=33 Identities=15% Similarity=0.184 Sum_probs=26.6
Q ss_pred HHHHHhccCChhHHHHHHHHHHHCCCCCChhhH
Q 002834 426 MLDAFSESGYNSQFLNLLNCMLMEGIRPDSITI 458 (875)
Q Consensus 426 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 458 (875)
+.+-..+.+++++|+..|.+.+..|+..|..+.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~ 41 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTL 41 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhh
Confidence 344566778899999999999999988887665
No 355
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=75.10 E-value=14 Score=29.67 Aligned_cols=47 Identities=13% Similarity=0.118 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHHHh
Q 002834 438 QFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKT 484 (875)
Q Consensus 438 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 484 (875)
+..+-++.+....+-|+.......|++|.+.+++..|.++++-++..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444555556677888888888888888888888888888877754
No 356
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=74.74 E-value=7.2 Score=35.11 Aligned_cols=124 Identities=10% Similarity=-0.016 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHHHCCCCCChhh---HHHHHHHHhhcCcHHHHHHHHHHhHHHh----CCCCCh-hHHHHHHHHhhcCCCh
Q 002834 672 GKAALKVFSDMLELGVNPDHVV---ITAVLSACSHAGLVDEGLEIFRSIEKVQ----GIKPTP-EQYASLVDLLARGGQI 743 (875)
Q Consensus 672 ~~~A~~~~~~m~~~g~~p~~~~---~~~ll~a~~~~g~~~~a~~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~ 743 (875)
++.|.+.++.-...+ +.|... |...|.-+++.....++.+++++....+ .+.|+. ..+.+++.+|...+.+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 344555555533321 223322 3333333444455556666666665432 355653 3666666665544321
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 002834 744 SDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTRD 823 (875)
Q Consensus 744 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 823 (875)
.||.. .....+++|...++++.+.+|+|..+...|-.. ++|-++...+..++
T Consensus 86 ------------~~d~~---------~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~-------~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 86 ------------TPDTA---------EAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA-------AKAPELHMEIHKQG 137 (186)
T ss_dssp ---------------HH---------HHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH-------HTHHHHHHHHHHSS
T ss_pred ------------cCChH---------HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH-------HhhHHHHHHHHHHH
Confidence 12110 011236778889999999999987766555332 34566655555554
Q ss_pred C
Q 002834 824 L 824 (875)
Q Consensus 824 ~ 824 (875)
.
T Consensus 138 ~ 138 (186)
T PF06552_consen 138 L 138 (186)
T ss_dssp S
T ss_pred h
Confidence 3
No 357
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=74.33 E-value=5.5 Score=30.09 Aligned_cols=47 Identities=11% Similarity=0.109 Sum_probs=27.9
Q ss_pred hcCcHHHHHHHHHHhHHHhCCCCChh-HHHHHHHHhhcCCChHHHHHH
Q 002834 703 HAGLVDEGLEIFRSIEKVQGIKPTPE-QYASLVDLLARGGQISDAYSL 749 (875)
Q Consensus 703 ~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~ 749 (875)
+....++|+..|++..+...-.|+.. ++.+++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666665433333322 566666777777777666654
No 358
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=74.11 E-value=1.3e+02 Score=32.12 Aligned_cols=103 Identities=16% Similarity=0.119 Sum_probs=64.5
Q ss_pred HHhHhcCCHHHHHHHhccCCC---C---------ChhhHHHHHHHHHHcCChHHHHHHHHHHH-------HCCCCCCh--
Q 002834 633 HLYAKCGSIFSASKIFQCHPQ---K---------DVVMLTAMIGGYAMHGMGKAALKVFSDML-------ELGVNPDH-- 691 (875)
Q Consensus 633 ~~~~~~g~~~~A~~~~~~~~~---~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~g~~p~~-- 691 (875)
..+.-.|++..|.+++..... + .-..||.|.-.+.+.|.+.-+..+|.+.. ..|++|..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 445557888888888765331 1 22346777666666666666666655554 34655542
Q ss_pred ---------hhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhh
Q 002834 692 ---------VVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLA 738 (875)
Q Consensus 692 ---------~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 738 (875)
.+|+. .-.+.+.|++-.|.+.|.+....+.- ++..|-.|.++|.
T Consensus 328 tls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~vfh~--nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 328 TLSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHVFHR--NPRLWLRLAECCI 380 (696)
T ss_pred ehhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHHHhc--CcHHHHHHHHHHH
Confidence 23432 33577889999999999888776544 4456666766664
No 359
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=73.97 E-value=44 Score=26.77 Aligned_cols=60 Identities=17% Similarity=0.093 Sum_probs=37.7
Q ss_pred HHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHH
Q 002834 633 HLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVIT 695 (875)
Q Consensus 633 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 695 (875)
..+...|++++|..+.+....||...|-+|-. .+.|..+++..-+.+|..+| .|....|.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 34456777777777777777777777765532 35566666666666666665 44444443
No 360
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=73.90 E-value=1.7e+02 Score=33.45 Aligned_cols=49 Identities=16% Similarity=-0.014 Sum_probs=33.8
Q ss_pred CccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcc
Q 002834 316 DLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYL 366 (875)
Q Consensus 316 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~ 366 (875)
|...-..+|--|.+.|++++|.++..+.... .......|...+..+...
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~--~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRNQ--FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGGG--S-TTTTHHHHHHHHCTTT
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhhh--hcchhHHHHHHHHHHHhC
Confidence 4445557788888899999999988655443 556667777788887665
No 361
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.83 E-value=8.4 Score=37.79 Aligned_cols=99 Identities=15% Similarity=0.142 Sum_probs=65.4
Q ss_pred hcCCCCchhhhHHHHHHHccCCchHHHHhhccCCC---------CCchhHHHHHHHHhcCCCChhHHHHHHHHhHhcCCC
Q 002834 72 LGHISCQAVSKALLNLYAKCGVIDDCYKLFGQVDN---------TDPVTWNILLSGFACSHVDDARVMNLFYNMHVRDQP 142 (875)
Q Consensus 72 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~ 142 (875)
.|.+.+..+-..++..-....+++.+...+-.++. ...++|-.++-.| ++++++.++..=..-| +
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllky-----~pq~~i~~l~npIqYG-i 131 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLKY-----DPQKAIYTLVNPIQYG-I 131 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHcc-----ChHHHHHHHhCcchhc-c
Confidence 34455555555555555556677777776655432 2334444444444 7778888887777777 7
Q ss_pred CCCcchHHHHHHHhhccCCcchhhhHHHHHHHhC
Q 002834 143 KPNSVTVAIVLSACARLGGIFAGKSLHAYVIKFG 176 (875)
Q Consensus 143 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 176 (875)
-||..++..++..+.+.+++..|.++.-.|....
T Consensus 132 F~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 132 FPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred ccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 8888888888888888888888877777766554
No 362
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=73.56 E-value=95 Score=30.40 Aligned_cols=53 Identities=11% Similarity=0.061 Sum_probs=35.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCChhh-------HHHHHHHHhhcCcHHHHHHHHH
Q 002834 663 IGGYAMHGMGKAALKVFSDMLELGVNPDHVV-------ITAVLSACSHAGLVDEGLEIFR 715 (875)
Q Consensus 663 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-------~~~ll~a~~~~g~~~~a~~~~~ 715 (875)
.+-..+.+++++|+..+.+....|+..|..+ ...+...|...|+...-.+...
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~ 69 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTIT 69 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 3444566788899999999888887776544 4445556677776655444443
No 363
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=73.51 E-value=11 Score=37.37 Aligned_cols=89 Identities=9% Similarity=0.047 Sum_probs=70.4
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHhCC----CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHH
Q 002834 729 QYASLVDLLARGGQISDAYSLVNRMP----VEAD--CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNL 802 (875)
Q Consensus 729 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 802 (875)
+|--=++-|.+.+++..|...|.+.. -.|| .+.|.+-..+-.-.||+..++.-..+++.++|.+...|+.=+.+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 55556677888899999999987763 3343 35566655555667999999999999999999999999999999
Q ss_pred HHhcCCchhHHHHHH
Q 002834 803 YAADARWDGVVEIRK 817 (875)
Q Consensus 803 ~~~~g~~~~A~~~~~ 817 (875)
+.+..++++|...-+
T Consensus 163 ~~eLe~~~~a~nw~e 177 (390)
T KOG0551|consen 163 LLELERFAEAVNWCE 177 (390)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999777776543
No 364
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=73.45 E-value=1.2e+02 Score=31.71 Aligned_cols=74 Identities=14% Similarity=0.160 Sum_probs=60.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhccC--CCcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCccHHHHHHHHHHcC
Q 002834 497 NAILDAYAKCRNIKYAFNVFQSLLEK--RNLVTFNPVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAEND 570 (875)
Q Consensus 497 ~~li~~~~~~g~~~~A~~~~~~~~~~--p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 570 (875)
..|+.-|...|++.+|...+.++.-. ...+.+.+++.+.-+.++-...+.+++.....+..+-+.|-++|.+..
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglIT~nQMtkGf~RV~ 588 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLITTNQMTKGFERVY 588 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCceeHHHhhhhhhhhh
Confidence 56778888899999999999886553 366788889999988888888888888888888888888888776543
No 365
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=73.11 E-value=83 Score=29.51 Aligned_cols=79 Identities=15% Similarity=0.127 Sum_probs=46.1
Q ss_pred hhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcCCCCcc-hHHHHHH--HHhccCChhHHHHHHHH
Q 002834 369 LKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRRDLI-SWNSMLD--AFSESGYNSQFLNLLNC 445 (875)
Q Consensus 369 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~--~~~~~g~~~~a~~~~~~ 445 (875)
...|+--|.+.+.. .|+.+.++|-|.--+...|+++.|.+.|+...+-|+. -|..+=+ ++.--|++.-|.+-+.+
T Consensus 81 ~~LAR~DftQaLai--~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~ 158 (297)
T COG4785 81 RALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLA 158 (297)
T ss_pred HHHHhhhhhhhhhc--CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHH
Confidence 33344444443333 4555557888888888888888888888887664432 2333222 22345677777666655
Q ss_pred HHHC
Q 002834 446 MLME 449 (875)
Q Consensus 446 m~~~ 449 (875)
.-+.
T Consensus 159 fYQ~ 162 (297)
T COG4785 159 FYQD 162 (297)
T ss_pred HHhc
Confidence 5443
No 366
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=72.48 E-value=38 Score=33.07 Aligned_cols=88 Identities=16% Similarity=0.144 Sum_probs=60.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC--CCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHh---
Q 002834 663 IGGYAMHGMGKAALKVFSDMLEL--GVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLL--- 737 (875)
Q Consensus 663 i~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~--- 737 (875)
|.+++..++|.+++.+.-+--+. .++|...-. =|-.|++.|......++-....++.+ .-+...|..+++.|
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleL--CILLysKv~Ep~amlev~~~WL~~p~-Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILEL--CILLYSKVQEPAAMLEVASAWLQDPS-NQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHH--HHHHHHHhcCHHHHHHHHHHHHhCcc-cCCchhhHHHHHHHHHH
Confidence 78899999999998877665542 244443333 33457899999988888888876321 22233476666555
Q ss_pred --hcCCChHHHHHHHHhC
Q 002834 738 --ARGGQISDAYSLVNRM 753 (875)
Q Consensus 738 --~~~g~~~~A~~~~~~~ 753 (875)
.-.|.++||++++..-
T Consensus 167 VLlPLG~~~eAeelv~gs 184 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVGS 184 (309)
T ss_pred HHhccccHHHHHHHHhcC
Confidence 4589999999999544
No 367
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=71.77 E-value=7.5 Score=24.99 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=12.8
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHH
Q 002834 796 YVVMSNLYAADARWDGVVEIRKLM 819 (875)
Q Consensus 796 ~~~l~~~~~~~g~~~~A~~~~~~~ 819 (875)
+..||.+|...|++++|++++++.
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHH
Confidence 445556666666666666654444
No 368
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=71.75 E-value=3.3e+02 Score=35.82 Aligned_cols=60 Identities=7% Similarity=-0.075 Sum_probs=33.9
Q ss_pred hHHHHHHHHhhcCCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 002834 728 EQYASLVDLLARGGQISDAYSLVNRMP-VEADCNVWGTLLGACRIHHEVELGRVVANRLFEM 788 (875)
Q Consensus 728 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 788 (875)
++|-..+.....+|+++.|...+-.+. .+ -+..+...+.-.+..|+...|...+++.+++
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~e~r-~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAKESR-LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhhcc-cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 355555555555677777665544432 22 2223344445556667777777777777654
No 369
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=69.83 E-value=1.6e+02 Score=31.56 Aligned_cols=413 Identities=11% Similarity=0.015 Sum_probs=0.0
Q ss_pred CccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHhcCCCCchhhHHHHH
Q 002834 316 DLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNAL 395 (875)
Q Consensus 316 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 395 (875)
|+..|...+.-+-+.+.+.+.-.+|..|.....-.||...+.+.=.--.+.. ++.++.++-.-++.+...+. .+...
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~n-i~saRalflrgLR~npdsp~--Lw~ey 180 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLN-IESARALFLRGLRFNPDSPK--LWKEY 180 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccc-hHHHHHHHHHHhhcCCCChH--HHHHH
Q ss_pred HHHHhcC----------------------CChhHHHHHHHhcCCCCcchHHHH-HHHHhccCChhHHHHHHHHHHHCCCC
Q 002834 396 VSFYAKC----------------------SDMEAAYRTFLMICRRDLISWNSM-LDAFSESGYNSQFLNLLNCMLMEGIR 452 (875)
Q Consensus 396 i~~~~~~----------------------g~~~~A~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~g~~ 452 (875)
.++-... .+.+.+...+..-....-..--.+ ....-......+.-+-.-+-...+..
T Consensus 181 frmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel~k~i~d~~~~~~~ 260 (568)
T KOG2396|consen 181 FRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKELQKNIIDDLQSKAP 260 (568)
T ss_pred HHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHHHHHHHHHHHhccCC
Q ss_pred CChhhHHHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-CCcccHHHH
Q 002834 453 PDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEK-RNLVTFNPV 531 (875)
Q Consensus 453 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l 531 (875)
-++.++ ...+.+.++... ..+...+...-..+.-.-+.+....+|++.... |....|+..
T Consensus 261 ~np~~~------------~~laqr~l~i~~-------~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~l~t~sm~e~Y 321 (568)
T KOG2396|consen 261 DNPLLW------------DDLAQRELEILS-------QTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKTLPTESMWECY 321 (568)
T ss_pred CCCccH------------HHHHHHHHHHHH-------HhhccchhhhhhchhcchhHHHHHHHHHHHHHHhhHHHHHHHH
Q ss_pred HHHh------hcCCChHHHHHHHHhhhcCCCcc---HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhh
Q 002834 532 ISGY------ANCGSADEAFMTFSRIYARDLTP---WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCS 602 (875)
Q Consensus 532 ~~~~------~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~ 602 (875)
|..| .+.........+++......... +..+...+.......++..+-..+...+++.+...+..-+....
T Consensus 322 I~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~ 401 (568)
T KOG2396|consen 322 ITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQVLI 401 (568)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHHHHH
Q ss_pred cc--cchHHHHHHHHHHHHhcCC-CchHHHHHH-HHhHhcCCHHHHHHHhccCCCCChhhHHH-HHHHHHHcCChHHHHH
Q 002834 603 QM--ASVHLLRQCHGYVIRACFD-GVRLNGALL-HLYAKCGSIFSASKIFQCHPQKDVVMLTA-MIGGYAMHGMGKAALK 677 (875)
Q Consensus 603 ~~--~~~~~a~~~~~~~~~~~~~-~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~ 677 (875)
+. .---.-...+..+.+.-.. ....+++.. ..+......+.-...+..+..+++.++.+ ++.-+-..|-..+|..
T Consensus 402 ~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark 481 (568)
T KOG2396|consen 402 ESKSDFQMLFEELFNHLRKQVCSELLISWASASEGDSLQEDTLDLIISALLSVIGADSVTLKSKYLDWAYESGGYKKARK 481 (568)
T ss_pred hhcchhHHHHHHHHHHHHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHhcCCceeehhHHHHHHHHHhcchHHHHH
Q ss_pred HHHHHHHCCCCCChhhHHHHHH--HHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhC
Q 002834 678 VFSDMLELGVNPDHVVITAVLS--ACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRM 753 (875)
Q Consensus 678 ~~~~m~~~g~~p~~~~~~~ll~--a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 753 (875)
.+..+... .+|+...|..++. .-..+-+..-+..+++.|...+| .|+..|......-...|..+.+-.++.++
T Consensus 482 ~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e~~~g~~en~~~~~~ra 556 (568)
T KOG2396|consen 482 VYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDYMKEELPLGRPENCGQIYWRA 556 (568)
T ss_pred HHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHHHhhccCCCcccccHHHHHH
No 370
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=69.81 E-value=1.3e+02 Score=30.44 Aligned_cols=65 Identities=15% Similarity=0.070 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHHHCCCCCChhhHHHHHHHhhc--cC----chhhHHHHHHHHHHhcCCCCCCchhHHHHHH
Q 002834 436 NSQFLNLLNCMLMEGIRPDSITILTIIHFCTT--VL----REGMVKETHGYLIKTGLLLGDTEHNIGNAIL 500 (875)
Q Consensus 436 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li 500 (875)
+++.+.+++.|.+.|++-+..+|.+....... .. ....+..+++.|++...+...++...+..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lL 148 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALL 148 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHH
Confidence 45667788889999998888777654433322 11 2345666666666665544444444444443
No 371
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=69.48 E-value=23 Score=33.66 Aligned_cols=63 Identities=11% Similarity=-0.051 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhcCChh-------HHHHHHHHHhcccCC------CCccHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 002834 760 NVWGTLLGACRIHHEVE-------LGRVVANRLFEMEAD------NIGNYVVMSNLYAADARWDGVVEIRKLMKTR 822 (875)
Q Consensus 760 ~~~~~l~~~~~~~~~~~-------~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 822 (875)
..+.-+.+.|+..|+.+ .|...++++++.+.. ......++|.++.+.|++++|.+.+.++...
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 34455566666666643 455555555555432 2345778999999999999999998887653
No 372
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=69.24 E-value=3.7e+02 Score=35.40 Aligned_cols=307 Identities=13% Similarity=0.045 Sum_probs=161.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhcc----CC-CcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCc
Q 002834 498 AILDAYAKCRNIKYAFNVFQSLLE----KR-NLVTFNPVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFP 572 (875)
Q Consensus 498 ~li~~~~~~g~~~~A~~~~~~~~~----~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 572 (875)
.+..+-.+++.+.+|.-.+++-.. +. ...-+..+...|..-++++....+... ...++. ...-+-.....|++
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~-r~a~~s-l~~qil~~e~~g~~ 1465 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSAR-RFADPS-LYQQILEHEASGNW 1465 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHH-hhcCcc-HHHHHHHHHhhccH
Confidence 344566788888888888887322 11 222334444477777777776666553 111222 23334444778899
Q ss_pred hHHHHHHHHHHHCCCCCC-cchHhcHHHHhhcccchHHHHHHHHHHHHhcCC-CchHHHHHHHHhHhcCCHHHHHHHhcc
Q 002834 573 NQALSLFLKLQAQGMKPD-AVTIMSLLPVCSQMASVHLLRQCHGYVIRACFD-GVRLNGALLHLYAKCGSIFSASKIFQC 650 (875)
Q Consensus 573 ~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 650 (875)
..|...|+.+.+. .|+ ..++..++......+.++......+-......+ .....+.=+.+-.+.++++.-.....
T Consensus 1466 ~da~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~- 1542 (2382)
T KOG0890|consen 1466 ADAAACYERLIQK--DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS- 1542 (2382)
T ss_pred HHHHHHHHHhhcC--CCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh-
Confidence 9999999998765 344 556666665555555555554433333322222 22233333334455666666555554
Q ss_pred CCCCChhhHHHH--HHHHHHcCC--hHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHH----------H
Q 002834 651 HPQKDVVMLTAM--IGGYAMHGM--GKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFR----------S 716 (875)
Q Consensus 651 ~~~~~~~~~~~l--i~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~----------~ 716 (875)
..+..+|.+. +..+.+..+ .-.-....+-+.+.-+.| +.+|+..|-+..+.++.- .
T Consensus 1543 --~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~ 1612 (2382)
T KOG0890|consen 1543 --DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELENS 1612 (2382)
T ss_pred --cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 3345555554 233332222 111222333333321111 122222222222222111 1
Q ss_pred hHHHhCCCCChhH-H--HHHHHHhhcCCChHHHHHHHHhC-------CCCCC-----HHHHHHHHHHHHhcCChhHHHHH
Q 002834 717 IEKVQGIKPTPEQ-Y--ASLVDLLARGGQISDAYSLVNRM-------PVEAD-----CNVWGTLLGACRIHHEVELGRVV 781 (875)
Q Consensus 717 ~~~~~~~~p~~~~-~--~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~ 781 (875)
.....++.|+..+ . .....-+.+.+..-.+.+-+-.+ ..+|+ ..+|......++..|.++.|..+
T Consensus 1613 ~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~na 1692 (2382)
T KOG0890|consen 1613 IEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNA 1692 (2382)
T ss_pred HHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHH
Confidence 1122234443211 0 11112222223222233322221 12222 36799999999999999999999
Q ss_pred HHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 782 ANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 782 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
.-++.+.. -+..+.-.|..+-..|+...|+.+++.-.+
T Consensus 1693 ll~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~ 1730 (2382)
T KOG0890|consen 1693 LLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILS 1730 (2382)
T ss_pred HHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 88887776 567888899999999999999998877654
No 373
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=68.45 E-value=60 Score=26.05 Aligned_cols=64 Identities=13% Similarity=0.072 Sum_probs=48.7
Q ss_pred HHHHHccCCchHHHHhhccCCCCCchhHHHHHHHHhcCCCChhHHHHHHHHhHhcCCCCCCcchHHHHH
Q 002834 85 LNLYAKCGVIDDCYKLFGQVDNTDPVTWNILLSGFACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVL 153 (875)
Q Consensus 85 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ll 153 (875)
+..+.+.|++++|..+.+.++.||...|-+|-.. +.| -...+..-+.+|..+| .|...+|..=+
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlG-l~s~l~~rl~rla~sg--~p~lq~Faag~ 109 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLG-LGSALESRLNRLAASG--DPRLQTFVAGM 109 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhc-cHHHHHHHHHHHHhCC--CHHHHHHHHHH
Confidence 4556789999999999999999999999887654 456 6666777788888888 56555554433
No 374
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.30 E-value=28 Score=37.77 Aligned_cols=99 Identities=20% Similarity=0.116 Sum_probs=59.1
Q ss_pred HhcCChhHHHHHhhhcCCCCccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChhhHHHHH
Q 002834 297 LRFGRTEEAELLFRRMKSRDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIH 376 (875)
Q Consensus 297 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~ 376 (875)
.+.|+++.|.++..+.. +..-|..|-.+..+.+++..|.+.|..... |..|+-.+...|+-+....+-
T Consensus 648 l~lgrl~iA~~la~e~~--s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l~~la 715 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN--SEVKWRQLGDAALSAGELPLASECFLRARD----------LGSLLLLYTSSGNAEGLAVLA 715 (794)
T ss_pred hhcCcHHHHHHHHHhhc--chHHHHHHHHHHhhcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhHHHHHH
Confidence 45677777777655543 566788888888888888888888876544 334555555556655444444
Q ss_pred HHHHhcCCCCchhhHHHHHHHHHhcCCChhHHHHHHHh
Q 002834 377 GYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLM 414 (875)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 414 (875)
....+.| ..|....+|...|+++++.+++.+
T Consensus 716 ~~~~~~g-------~~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 716 SLAKKQG-------KNNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHhhc-------ccchHHHHHHHcCCHHHHHHHHHh
Confidence 4444444 223333344455555555555543
No 375
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=68.26 E-value=54 Score=28.10 Aligned_cols=63 Identities=19% Similarity=0.108 Sum_probs=28.3
Q ss_pred CChhhHHHHHHHHhhcC---cHHHHHHHHHHhHHHhCCCCC--hhHHHHHHHHhhcCCChHHHHHHHHhC
Q 002834 689 PDHVVITAVLSACSHAG---LVDEGLEIFRSIEKVQGIKPT--PEQYASLVDLLARGGQISDAYSLVNRM 753 (875)
Q Consensus 689 p~~~~~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 753 (875)
++..+-..+..++.+.. ++.+++.++++..+ .-.|+ .+....|.-.+.|.|.++++..+++..
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~--~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~l 97 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK--SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDAL 97 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh--hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHH
Confidence 33333333444444432 34445555555543 12222 223333444555566666666555554
No 376
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=67.87 E-value=78 Score=33.36 Aligned_cols=142 Identities=11% Similarity=0.049 Sum_probs=97.6
Q ss_pred HhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHH
Q 002834 701 CSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP--VEADCNVWGTLLGACRIHHEVELG 778 (875)
Q Consensus 701 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a 778 (875)
-...|+.-.|-+-+....+.+.-.|+.. ......+...|.++.+.+.+.... .-....+...++......|+.+.|
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i--~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLI--QLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhh--HHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHH
Confidence 3456777766665555555444445443 334455677899999999998874 334456777788888888999999
Q ss_pred HHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhCCCcCCCceeEEEeCCEEeEEecCC
Q 002834 779 RVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTRDLKKPAACSWIEVERKNNAFMAGD 846 (875)
Q Consensus 779 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~~~f~~~~ 846 (875)
...++.++..+-+++...-.-+-.-.+.|-++++.-.||.+-.. .+....-|+..-.....|-.|.
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~--~~~~~~g~v~~~~~~~~~~~~~ 442 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLL--NPETQSGWVNFLSSTQYFNDGN 442 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhcc--CChhcccceeeeccceeccCcc
Confidence 99999999888777776555555555668899999999987643 3334445776554544455554
No 377
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=67.63 E-value=2.9e+02 Score=33.52 Aligned_cols=21 Identities=0% Similarity=-0.075 Sum_probs=10.8
Q ss_pred CCCcccHHHHHHHhhcCCChH
Q 002834 522 KRNLVTFNPVISGYANCGSAD 542 (875)
Q Consensus 522 ~p~~~~~~~l~~~~~~~~~~~ 542 (875)
.|++..-...+..+.+.+..+
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~ 652 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPG 652 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchh
Confidence 345555555555555555433
No 378
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=67.35 E-value=20 Score=35.14 Aligned_cols=49 Identities=8% Similarity=0.021 Sum_probs=38.5
Q ss_pred HHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHH
Q 002834 769 CRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRK 817 (875)
Q Consensus 769 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 817 (875)
.++.|+.++|..+++.++.+.|.++..+.-+|......++.-+|-..+-
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~ 174 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYV 174 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhh
Confidence 4567888888888888888888888888888877777777777777543
No 379
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=67.09 E-value=16 Score=22.93 Aligned_cols=30 Identities=7% Similarity=-0.181 Sum_probs=15.6
Q ss_pred HHHHHHHHHhcCChhHHHHH--HHHHhcccCC
Q 002834 762 WGTLLGACRIHHEVELGRVV--ANRLFEMEAD 791 (875)
Q Consensus 762 ~~~l~~~~~~~~~~~~a~~~--~~~~~~~~p~ 791 (875)
|-.+...+..+|+.+.|+.. ++-+..++|.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 34444555556666666666 3355555554
No 380
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=66.95 E-value=64 Score=30.81 Aligned_cols=52 Identities=10% Similarity=-0.112 Sum_probs=33.5
Q ss_pred HHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHH
Q 002834 767 GACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKL 818 (875)
Q Consensus 767 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 818 (875)
.++...|++-.+++.....+..+|.|..+|+.-+.+.+..=+-++|..=++.
T Consensus 238 QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~ 289 (329)
T KOG0545|consen 238 QCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQK 289 (329)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 3344556777777777777777777777777777666666566666654433
No 381
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=66.82 E-value=1.6e+02 Score=30.42 Aligned_cols=114 Identities=17% Similarity=0.219 Sum_probs=82.9
Q ss_pred HHHHHHhhcCCChHHHHHHHHhCCCCC------CH--HHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCC-------cc
Q 002834 731 ASLVDLLARGGQISDAYSLVNRMPVEA------DC--NVWGTLLGACRIHHEVELGRVVANRLFEMEADNI-------GN 795 (875)
Q Consensus 731 ~~l~~~~~~~g~~~~A~~~~~~~~~~p------~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-------~~ 795 (875)
..|...+-..|+.++|.+++.+.+.+. .. ....--+..|...+|+-.|..+.+++....-+++ .+
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlky 214 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKY 214 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHH
Confidence 456677888999999999999986321 11 1122234778889999999999998866543333 25
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHhCCCcCCCceeEEEeCCEEeEEec
Q 002834 796 YVVMSNLYAADARWDGVVEIRKLMKTRDLKKPAACSWIEVERKNNAFMA 844 (875)
Q Consensus 796 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~~~f~~ 844 (875)
|..+..+....+.+=++.+.++..-+.|..+....-|+++--.+..|..
T Consensus 215 Y~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~~ 263 (439)
T KOG1498|consen 215 YELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFCV 263 (439)
T ss_pred HHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeEEe
Confidence 7788888889999999999999998877666555558877555554654
No 382
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=66.57 E-value=47 Score=33.00 Aligned_cols=21 Identities=10% Similarity=-0.013 Sum_probs=16.7
Q ss_pred HHHHHHHHHhcccCCCCccHH
Q 002834 777 LGRVVANRLFEMEADNIGNYV 797 (875)
Q Consensus 777 ~a~~~~~~~~~~~p~~~~~~~ 797 (875)
.|+++..++.+.+|.-|....
T Consensus 380 ~AvEAihRAvEFNPHVPkYLL 400 (556)
T KOG3807|consen 380 NAVEAIHRAVEFNPHVPKYLL 400 (556)
T ss_pred HHHHHHHHHhhcCCCCcHHHH
Confidence 578888999999998776544
No 383
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=66.48 E-value=38 Score=31.44 Aligned_cols=75 Identities=13% Similarity=0.137 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhC--CCCChhHHHHHHHHhhcCCChHHHH
Q 002834 672 GKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQG--IKPTPEQYASLVDLLARGGQISDAY 747 (875)
Q Consensus 672 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~ 747 (875)
-+.|.+.|-++...+.--+ ......+..|.-..+.+++..++.++.+... -.+|++.+..|+..+.+.|+++.|.
T Consensus 122 d~~A~~~fL~~E~~~~l~t-~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELET-AELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3556666666666553333 3333333444445577777777766655322 2345566666666666666666654
No 384
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=66.33 E-value=11 Score=25.00 Aligned_cols=26 Identities=12% Similarity=0.197 Sum_probs=21.0
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHhC
Q 002834 797 VVMSNLYAADARWDGVVEIRKLMKTR 822 (875)
Q Consensus 797 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 822 (875)
..|+..|...|+.+.|.++++.+...
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 46888899999999999988776643
No 385
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.12 E-value=1.9e+02 Score=30.92 Aligned_cols=186 Identities=15% Similarity=0.065 Sum_probs=116.6
Q ss_pred HHHHHHHhccCCCCC--hh--------hHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCh-------hhHHHHHH-HH
Q 002834 641 IFSASKIFQCHPQKD--VV--------MLTAMIGGYAMHGMGKAALKVFSDMLEL-GVNPDH-------VVITAVLS-AC 701 (875)
Q Consensus 641 ~~~A~~~~~~~~~~~--~~--------~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~-------~~~~~ll~-a~ 701 (875)
-++|+...++.++.| .. ....++-+-.-.|++.+|++-..+|.+- .-.|.. .....+++ -|
T Consensus 298 tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys 377 (629)
T KOG2300|consen 298 TDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYS 377 (629)
T ss_pred HHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHh
Confidence 456666666666644 22 2223334445679999999999988862 123331 12334455 45
Q ss_pred hhcCcHHHHHHHHHHhHHHhCCCCChh--HHHHHHHHhhcCCChHHHHHHHHhCCCC-CCH--------HHHHHHHHHHH
Q 002834 702 SHAGLVDEGLEIFRSIEKVQGIKPTPE--QYASLVDLLARGGQISDAYSLVNRMPVE-ADC--------NVWGTLLGACR 770 (875)
Q Consensus 702 ~~~g~~~~a~~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~-p~~--------~~~~~l~~~~~ 770 (875)
...+.++.|..-|..+.+. .-..|.. .-..+.-.|.+.|+-+.-.++++.+.-. ..+ .++....-...
T Consensus 378 ~sv~~~enAe~hf~~a~k~-t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf 456 (629)
T KOG2300|consen 378 HSVNCYENAEFHFIEATKL-TESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAF 456 (629)
T ss_pred hhcchHHHHHHHHHHHHHh-hhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 5678999999999888662 2222322 3345677889999988888888877411 111 11111112234
Q ss_pred hcCChhHHHHHHHHHhcccCC------CCccHHHHHHHHHhcCCchhHHH-HHHHHHhCCCcCCCc
Q 002834 771 IHHEVELGRVVANRLFEMEAD------NIGNYVVMSNLYAADARWDGVVE-IRKLMKTRDLKKPAA 829 (875)
Q Consensus 771 ~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~ 829 (875)
.++++.+|+....+.++..-- .+...++|+++....|+..++.+ ++-.|.- -+|.|+
T Consensus 457 ~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamql--AkKi~D 520 (629)
T KOG2300|consen 457 KQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQL--AKKIPD 520 (629)
T ss_pred HhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHH--HhcCCC
Confidence 678999999999988886511 23457789999999999999998 4666653 234444
No 386
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=65.61 E-value=80 Score=33.38 Aligned_cols=53 Identities=13% Similarity=0.032 Sum_probs=32.2
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChh--hHHHHHHHHh--hcCcHHHHHHHHHHhHH
Q 002834 666 YAMHGMGKAALKVFSDMLELGVNPDHV--VITAVLSACS--HAGLVDEGLEIFRSIEK 719 (875)
Q Consensus 666 ~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~a~~--~~g~~~~a~~~~~~~~~ 719 (875)
+...+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34667777888888777775 455444 2333333332 35567777777776655
No 387
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=65.56 E-value=8.3 Score=22.97 Aligned_cols=29 Identities=14% Similarity=0.253 Sum_probs=23.1
Q ss_pred CChhHHHHHHHHHhcccCCCCccHHHHHH
Q 002834 773 HEVELGRVVANRLFEMEADNIGNYVVMSN 801 (875)
Q Consensus 773 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 801 (875)
|+.+.+..++++++...|.++..|..++.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 46788889999999988888877776654
No 388
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.50 E-value=1.5e+02 Score=30.92 Aligned_cols=61 Identities=18% Similarity=0.110 Sum_probs=46.2
Q ss_pred chHHHHHHHHhHhcCCHHHHHHHhccCCC------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 002834 625 VRLNGALLHLYAKCGSIFSASKIFQCHPQ------KDVVMLTAMIGGYAMHGMGKAALKVFSDMLEL 685 (875)
Q Consensus 625 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 685 (875)
.....-+.+.|..||+++.|++.|.+... .-+..|-.+|..-.-.|+|........+....
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 34556788899999999999999999664 22345666777777788888888777777653
No 389
>PHA02875 ankyrin repeat protein; Provisional
Probab=64.33 E-value=1.8e+02 Score=31.29 Aligned_cols=196 Identities=12% Similarity=0.051 Sum_probs=0.0
Q ss_pred HHHHHHhHhcCCCCCCcch--HHHHHHHhhccCCcchhhhHHHHHHHhCCCCCcc--hhhHHHHHhHhcCChhHHHHHhc
Q 002834 130 MNLFYNMHVRDQPKPNSVT--VAIVLSACARLGGIFAGKSLHAYVIKFGLERHTL--VGNSLTSMYAKRGLVHDAYSVFD 205 (875)
Q Consensus 130 ~~~~~~m~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~ 205 (875)
.++++.+.+.| ..|+... ..+.|..++..|+.+ +.+.+.+.|..|+.. ...+.+...+..|+.+.+..+++
T Consensus 15 ~~iv~~Ll~~g-~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~ 89 (413)
T PHA02875 15 LDIARRLLDIG-INPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD 89 (413)
T ss_pred HHHHHHHHHCC-CCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH
Q ss_pred cCCCCCeeeHH---HHHHHHHcCCCcchHHHHHHHHHhCCCCCChhhHHhHHHHhccCCccccccchhHHHHHHHHhccc
Q 002834 206 SIEDKDVVSWN---AVISGLSENKVLGDAFRLFSWMLTEPIKPNYATILNILPICASLDEDVGYFFGREIHCYVLRRAEL 282 (875)
Q Consensus 206 ~~~~~~~~~~~---~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (875)
.-...+..... +.+...+..|+. ++++.+.+.|..|+.
T Consensus 90 ~~~~~~~~~~~~g~tpL~~A~~~~~~----~iv~~Ll~~gad~~~----------------------------------- 130 (413)
T PHA02875 90 LGKFADDVFYKDGMTPLHLATILKKL----DIMKLLIARGADPDI----------------------------------- 130 (413)
T ss_pred cCCcccccccCCCCCHHHHHHHhCCH----HHHHHHHhCCCCCCC-----------------------------------
Q ss_pred CCchhHhhhHHHHhHhcCChhHHHHHhhhcCC---CCccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHH--
Q 002834 283 IADVSVCNALVSFYLRFGRTEEAELLFRRMKS---RDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLV-- 357 (875)
Q Consensus 283 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~-- 357 (875)
......+.+...+..|+.+-+..+++.-.. +|...++.+..+..... .++.+.+.+.| ..|+.....
T Consensus 131 --~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~-----~eiv~~Ll~~g-a~~n~~~~~~~ 202 (413)
T PHA02875 131 --PNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGD-----IAICKMLLDSG-ANIDYFGKNGC 202 (413)
T ss_pred --CCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCC-----HHHHHHHHhCC-CCCCcCCCCCC
Q ss_pred -HHHHHHhccCChhhHHHHHH
Q 002834 358 -SLLPACAYLKNLKVGKEIHG 377 (875)
Q Consensus 358 -~ll~~~~~~~~~~~a~~~~~ 377 (875)
+++...+..++.+.++.+++
T Consensus 203 ~t~l~~A~~~~~~~iv~~Ll~ 223 (413)
T PHA02875 203 VAALCYAIENNKIDIVRLFIK 223 (413)
T ss_pred chHHHHHHHcCCHHHHHHHHH
No 390
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=63.84 E-value=1.6e+02 Score=29.27 Aligned_cols=121 Identities=9% Similarity=0.086 Sum_probs=79.0
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHhhc-cC-CcchhhhHHHHHHHh-CCCCCcchhhHHH
Q 002834 112 WNILLSGFACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSACAR-LG-GIFAGKSLHAYVIKF-GLERHTLVGNSLT 188 (875)
Q Consensus 112 ~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~-~~-~~~~a~~~~~~~~~~-g~~~~~~~~~~li 188 (875)
|..|+.. +. ...+|+.+|+.....+.+-.|......+++.... .+ ....--++.+.+... |-.++..+-..++
T Consensus 134 Y~~LVk~---N~-~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il 209 (292)
T PF13929_consen 134 YWDLVKR---NK-IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISIL 209 (292)
T ss_pred HHHHHHh---hH-HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHH
Confidence 5555442 23 5667777777433322266777777777777765 22 333333444444432 3567777788889
Q ss_pred HHhHhcCChhHHHHHhccCC-----CCCeeeHHHHHHHHHcCCCcchHHHHHH
Q 002834 189 SMYAKRGLVHDAYSVFDSIE-----DKDVVSWNAVISGLSENKVLGDAFRLFS 236 (875)
Q Consensus 189 ~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~l~~ 236 (875)
..+++.+++..-.++++.-. ..|...|..+|......|+..-...+.+
T Consensus 210 ~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 210 EILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 99999999999888887643 3578889999999999998765444443
No 391
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=63.42 E-value=10 Score=21.91 Aligned_cols=28 Identities=14% Similarity=0.133 Sum_probs=23.5
Q ss_pred ccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 794 GNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 794 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
..+..+|.+|...|++++|...++....
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 4578899999999999999998776543
No 392
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=63.29 E-value=53 Score=31.33 Aligned_cols=65 Identities=5% Similarity=0.025 Sum_probs=47.4
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCC
Q 002834 729 QYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNI 793 (875)
Q Consensus 729 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 793 (875)
.+..+..++...|++-++++-..++. ..| +..+|..-..+-...=|..+|++-+.++++++|.-.
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsla 298 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLA 298 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhH
Confidence 45566778888899999998888874 445 445554444454445588999999999999999643
No 393
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=63.01 E-value=73 Score=27.92 Aligned_cols=77 Identities=14% Similarity=0.206 Sum_probs=52.9
Q ss_pred hhHHHHHHHccCCchHHHHhhccCC---------CCCchhHHHHHHHHhcCCCC-hhHHHHHHHHhHhcCCCCCCcchHH
Q 002834 81 SKALLNLYAKCGVIDDCYKLFGQVD---------NTDPVTWNILLSGFACSHVD-DARVMNLFYNMHVRDQPKPNSVTVA 150 (875)
Q Consensus 81 ~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~li~~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~ 150 (875)
.|.++.-....+++.....+++.+. ..+-.+|++++.+.+++. . ---+..+|..|++.+ .++++..|.
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSs-SaK~~~~~Lf~~Lk~~~-~~~t~~dy~ 119 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSS-SAKLTSLTLFNFLKKND-IEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccCh-HHHHHHHHHHHHHHHcC-CCCCHHHHH
Confidence 3445444444455555555554442 246677899999987666 4 455678888888877 889999999
Q ss_pred HHHHHhhcc
Q 002834 151 IVLSACARL 159 (875)
Q Consensus 151 ~ll~~~~~~ 159 (875)
.++.+|.+.
T Consensus 120 ~li~~~l~g 128 (145)
T PF13762_consen 120 CLIKAALRG 128 (145)
T ss_pred HHHHHHHcC
Confidence 999988764
No 394
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=62.06 E-value=2.9e+02 Score=31.62 Aligned_cols=228 Identities=12% Similarity=0.127 Sum_probs=91.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhccC--CCcccHHHHHHHhhcCCC-------hHHHHHHHHhhhcCCC--ccHHHHHHHH
Q 002834 498 AILDAYAKCRNIKYAFNVFQSLLEK--RNLVTFNPVISGYANCGS-------ADEAFMTFSRIYARDL--TPWNLMIRVY 566 (875)
Q Consensus 498 ~li~~~~~~g~~~~A~~~~~~~~~~--p~~~~~~~l~~~~~~~~~-------~~~A~~~~~~~~~~~~--~~~~~l~~~~ 566 (875)
++|--+.|+|.+++|.++..+.... .....+...+..|..+.+ -+....-|++...... .||-..+...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~AvY~i 195 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRAVYKI 195 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHH
Confidence 3455667999999999998554442 244567777777766532 2344555555554444 6644433333
Q ss_pred HHcCCc-----hHHHH-----HHHHHH--HCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCC--Cc-hHHHHH
Q 002834 567 AENDFP-----NQALS-----LFLKLQ--AQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFD--GV-RLNGAL 631 (875)
Q Consensus 567 ~~~~~~-----~~A~~-----~~~~m~--~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~--~~-~~~~~l 631 (875)
....+. .+... +|-++. ......+...+ ..-.-..+-..+.+.|.. +. .-.-..
T Consensus 196 lg~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~-----------e~~~L~~LQ~~i~~~Ge~~F~~~~~p~~Y 264 (613)
T PF04097_consen 196 LGRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAY-----------ERYTLEDLQKLILKYGESHFNAGSNPLLY 264 (613)
T ss_dssp HHT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS---------------HHHHHHHHHHH-GGGCTT------H
T ss_pred HhcCCccccchHHHhCcHHHHHHHHHHhhccCCCcccccc-----------ccccHHHHHHHHHHhchhhcccchhHHHH
Confidence 322222 11111 111111 11111000000 000111222333333333 11 111233
Q ss_pred HHHhHhcCCHHHHHHHhccCC--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCChhhHHHHHHHHhh---cC
Q 002834 632 LHLYAKCGSIFSASKIFQCHP--QKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELG-VNPDHVVITAVLSACSH---AG 705 (875)
Q Consensus 632 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~a~~~---~g 705 (875)
..++.-+|+++.|.+.+-+.. ..|.+.+-..+ ...|-..-.-..-..+.... -.|....|..++..|.+ ..
T Consensus 265 f~~LlLtgqFE~AI~~L~~~~~~~~dAVH~AIaL---~~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~~t 341 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRNEFNRVDAVHFAIAL---AYYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFEIT 341 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT--T-HHHHHHHHHHH---HHTT------------------------HHHHHHHHHHTTTTT
T ss_pred HHHHHHHhhHHHHHHHHHhhccCcccHHHHHHHH---HHcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHhcc
Confidence 445566899999999988722 23333333222 22222211111112222211 11222567777777654 57
Q ss_pred cHHHHHHHHHHhHHHhCCCCCh--hHHHHHHHHhhcCC
Q 002834 706 LVDEGLEIFRSIEKVQGIKPTP--EQYASLVDLLARGG 741 (875)
Q Consensus 706 ~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g 741 (875)
+..+|.++|--+.. ..- |+. ....++.+.....+
T Consensus 342 d~~~Al~Y~~li~~-~~~-~~~~~l~~~~l~eLvletr 377 (613)
T PF04097_consen 342 DPREALQYLYLICL-FKD-PEQRNLFHECLRELVLETR 377 (613)
T ss_dssp -HHHHHHHHHGGGG-S-S-CCHHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHH-cCC-chHHHHHHHHHHHHHHccC
Confidence 88999999876644 211 322 24445555544444
No 395
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=60.33 E-value=13 Score=34.92 Aligned_cols=56 Identities=18% Similarity=0.220 Sum_probs=35.7
Q ss_pred hhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCC
Q 002834 737 LARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADN 792 (875)
Q Consensus 737 ~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 792 (875)
+.+.|+.+.|.+++++.. ..| ....|..+...--+.|+++.|.+++++.++++|++
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 345566666666666653 333 34566666666666777777777777777777764
No 396
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=59.68 E-value=24 Score=32.72 Aligned_cols=91 Identities=12% Similarity=0.120 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHH-HHHHHhcCCchhHHHHHHHHHhCCCcCCCceeEEEeCCEE
Q 002834 761 VWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVM-SNLYAADARWDGVVEIRKLMKTRDLKKPAACSWIEVERKN 839 (875)
Q Consensus 761 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~ 839 (875)
...+++..|...||.+.|-+++--++...+-|.....-+ +.++...+.-....+.++.|...-.....-.......+..
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~~~~~~~~~~~~~~~~ 122 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYPSRKAFNQYYNRRIIA 122 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHHHhhhccchhhhhccc
Confidence 356777888888999999999888888776665543333 4677777776666676666654322111111222233345
Q ss_pred eEEecCCCCCCC
Q 002834 840 NAFMAGDYSHPR 851 (875)
Q Consensus 840 ~~f~~~~~~~~~ 851 (875)
+.|.+|.+.|.-
T Consensus 123 pvfrsGs~t~tp 134 (199)
T PF04090_consen 123 PVFRSGSRTHTP 134 (199)
T ss_pred ccccCCCcccch
Confidence 789999988843
No 397
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=59.65 E-value=21 Score=23.68 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=15.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHC
Q 002834 662 MIGGYAMHGMGKAALKVFSDMLEL 685 (875)
Q Consensus 662 li~~~~~~g~~~~A~~~~~~m~~~ 685 (875)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455666666666666666666653
No 398
>PF15469 Sec5: Exocyst complex component Sec5
Probab=59.32 E-value=1.3e+02 Score=27.87 Aligned_cols=85 Identities=13% Similarity=0.224 Sum_probs=44.5
Q ss_pred HHHHHhhcCcHHHHHHHHHHhHHHhCCCC-ChhHHHHHHHHhhcCCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 002834 697 VLSACSHAGLVDEGLEIFRSIEKVQGIKP-TPEQYASLVDLLARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEV 775 (875)
Q Consensus 697 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 775 (875)
-+.-|.+.|+++.+...|.++...++-.. ....+.. -+.++...++++. ...|..|... ....
T Consensus 92 ~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~---------v~~eve~ii~~~r----~~l~~~L~~~---~~s~ 155 (182)
T PF15469_consen 92 NLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQK---------VWSEVEKIIEEFR----EKLWEKLLSP---PSSQ 155 (182)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHH---------HHHHHHHHHHHHH----HHHHHHHhCC---CCCH
Confidence 45667788888888888887776433222 2222221 2333333333321 1122222211 1456
Q ss_pred hHHHHHHHHHhcccCCCCccHH
Q 002834 776 ELGRVVANRLFEMEADNIGNYV 797 (875)
Q Consensus 776 ~~a~~~~~~~~~~~p~~~~~~~ 797 (875)
+....+...+++++|++..++.
T Consensus 156 ~~~~~~i~~Ll~L~~~~dPi~~ 177 (182)
T PF15469_consen 156 EEFLKLIRKLLELNVEEDPIWY 177 (182)
T ss_pred HHHHHHHHHHHhCCCCCCHHHH
Confidence 6677777888888876544443
No 399
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=59.18 E-value=27 Score=27.97 Aligned_cols=51 Identities=6% Similarity=0.006 Sum_probs=35.2
Q ss_pred HhcCChhHHHHHHHHHhcccCCCC---------ccHHHHHHHHHhcCCchhHHHHHHHHH
Q 002834 770 RIHHEVELGRVVANRLFEMEADNI---------GNYVVMSNLYAADARWDGVVEIRKLMK 820 (875)
Q Consensus 770 ~~~~~~~~a~~~~~~~~~~~p~~~---------~~~~~l~~~~~~~g~~~~A~~~~~~~~ 820 (875)
...||+..|.+.+.+.++...... .....++.++...|++++|.+.++...
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 456777777777777776543322 234567888999999999999765543
No 400
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=58.44 E-value=30 Score=36.49 Aligned_cols=108 Identities=14% Similarity=0.147 Sum_probs=56.5
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcC---CCh
Q 002834 667 AMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARG---GQI 743 (875)
Q Consensus 667 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~ 743 (875)
...|++.+|+..|+.++.. ..+.........+++.+++...++ | .....++.-.|. ...
T Consensus 215 ~t~gKF~eA~~~Fr~iL~~----------i~l~vv~~~~E~~e~~eli~icrE-Y-------ilgl~iEl~Rr~l~~~~~ 276 (422)
T PF06957_consen 215 FTAGKFEEAIEIFRSILHS----------IPLLVVESREEEDEAKELIEICRE-Y-------ILGLSIELERRELPKDPV 276 (422)
T ss_dssp HHTT-HHHHHHHHHHHHHH----------HHC--BSSCHHHHHHHHHHHHHHH-H-------HHHHHHHHHHCTS-TTTH
T ss_pred HhcCCHHHHHHHHHHHHHH----------hheeeecCHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHhccccch
Confidence 4678888888888876642 111122223344555555544443 1 112222222221 112
Q ss_pred HHH------HHHHHhCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHhcccCCC
Q 002834 744 SDA------YSLVNRMPVEADC--NVWGTLLGACRIHHEVELGRVVANRLFEMEADN 792 (875)
Q Consensus 744 ~~A------~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 792 (875)
++. ..+|....++|.. .++++-++.+.+++|+..|-..+++++++.|..
T Consensus 277 ~~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 277 EDQKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred hhHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 222 2233444456644 556677788889999999999999999998854
No 401
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=58.32 E-value=3.6e+02 Score=31.51 Aligned_cols=82 Identities=15% Similarity=0.050 Sum_probs=45.9
Q ss_pred HhcCCHHHHHHHHHhhccC---CCcc-------cHHHHHHH-hhcCCChHHHHHHHHhhhcC--------CCccHHHHHH
Q 002834 504 AKCRNIKYAFNVFQSLLEK---RNLV-------TFNPVISG-YANCGSADEAFMTFSRIYAR--------DLTPWNLMIR 564 (875)
Q Consensus 504 ~~~g~~~~A~~~~~~~~~~---p~~~-------~~~~l~~~-~~~~~~~~~A~~~~~~~~~~--------~~~~~~~l~~ 564 (875)
....++.+|..++.+.... |+.. .|+.+-.. ....|++++|..+.+..... ....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 4566777777777766542 2211 33333222 23456667776666555222 2222666666
Q ss_pred HHHHcCCchHHHHHHHHHHHC
Q 002834 565 VYAENDFPNQALSLFLKLQAQ 585 (875)
Q Consensus 565 ~~~~~~~~~~A~~~~~~m~~~ 585 (875)
+..-.|++++|..+..+..+.
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHH
Confidence 667777787777776665543
No 402
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.61 E-value=2e+02 Score=33.84 Aligned_cols=201 Identities=12% Similarity=0.158 Sum_probs=92.6
Q ss_pred hHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCCCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCCchhhhHHHHH
Q 002834 8 SWITIINGFCRDGLHKEALSLFAHELQSSPSVRHNHQLFSAVLKSCTSLADILLGKALHGYVTKLGHISCQAVSKALLNL 87 (875)
Q Consensus 8 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 87 (875)
-|..|+--|...|.+++|++++.+..... + .-+..+ ...-..+.+...+.+-+ +. .|+-.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~-~-~~d~~~-------------~~~~e~ii~YL~~l~~~-~~----~Li~~ 565 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDED-S-DTDSFQ-------------LDGLEKIIEYLKKLGAE-NL----DLILE 565 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccc-c-ccccch-------------hhhHHHHHHHHHHhccc-ch----hHHHH
Confidence 47788888888888888888888777631 1 011100 01111233333333321 11 12222
Q ss_pred HHc---cCCchHHHHhhccC-C-CCCchhHHHHHHHHhcCCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHhhccCCc
Q 002834 88 YAK---CGVIDDCYKLFGQV-D-NTDPVTWNILLSGFACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSACARLGGI 162 (875)
Q Consensus 88 ~~~---~g~~~~A~~~~~~~-~-~~~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~ 162 (875)
|.. ..+.+...++|-.- + +-...+-.-++ .|.... ...-++..++.+.... -.++..-.+.++..|+..-+.
T Consensus 566 y~~wvl~~~p~~gi~Ift~~~~~~~~sis~~~Vl-~~l~~~-~~~l~I~YLE~li~~~-~~~~~~lht~ll~ly~e~v~~ 642 (877)
T KOG2063|consen 566 YADWVLNKNPEAGIQIFTSEDKQEAESISRDDVL-NYLKSK-EPKLLIPYLEHLISDN-RLTSTLLHTVLLKLYLEKVLE 642 (877)
T ss_pred HhhhhhccCchhheeeeeccChhhhccCCHHHHH-HHhhhh-CcchhHHHHHHHhHhc-cccchHHHHHHHHHHHHHHhh
Confidence 221 34556666666441 0 00111111222 233455 6777888888887766 455666777777766543221
Q ss_pred -chhhhHHHHHHHhCCCCCcchhhHHHHHhHhcCChhHHHHHhccCCCCCeeeHHHHHHHHHcCCCcchHHHHHHHHHh
Q 002834 163 -FAGKSLHAYVIKFGLERHTLVGNSLTSMYAKRGLVHDAYSVFDSIEDKDVVSWNAVISGLSENKVLGDAFRLFSWMLT 240 (875)
Q Consensus 163 -~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 240 (875)
.... ..|-..-..++...+..+....+.-....+++..+.....-..+++-+ +.|+.++|+.++-....
T Consensus 643 ~~~~~-------~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~--rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 643 QASTD-------GKGEEAPETTVREKLLDFLESSDLYDPQLLLERLNGDELYEERAILLG--RLGKHEEALHIYVHELD 712 (877)
T ss_pred ccCch-------hccccchhhhHHHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHh--hhhhHHHHHHHHHHHhc
Confidence 0000 001000000111222222222222222223333333223334444443 88999999998877654
No 403
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=56.91 E-value=37 Score=31.76 Aligned_cols=65 Identities=12% Similarity=0.079 Sum_probs=50.8
Q ss_pred HHHHHHHhhcCCChHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCc
Q 002834 730 YASLVDLLARGGQISDAYSLVNR-MPVEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIG 794 (875)
Q Consensus 730 ~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 794 (875)
...-+..+.+.+.+++|+...++ .+.+| |...-..|...++..|+.++|..-.+-+-++.|++..
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 34456778888999999977654 44556 5566777888899999999999999999999998644
No 404
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=55.26 E-value=2.2e+02 Score=28.17 Aligned_cols=80 Identities=15% Similarity=0.137 Sum_probs=41.8
Q ss_pred hHHHHHHHHHhcCCChhHHHHHHHhcCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccC
Q 002834 390 AVGNALVSFYAKCSDMEAAYRTFLMICRRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVL 469 (875)
Q Consensus 390 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 469 (875)
.....+...|.+.|++.+|+.-|-.-..++...+..++......|...++--.+-+ .++ .+...+
T Consensus 91 ~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~R--------------aVL-~yL~l~ 155 (260)
T PF04190_consen 91 ELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIAR--------------AVL-QYLCLG 155 (260)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHH--------------HHH-HHHHTT
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHH--------------HHH-HHHHhc
Confidence 37788889999999999998887554444443333334333333333333111111 122 233455
Q ss_pred chhhHHHHHHHHHHh
Q 002834 470 REGMVKETHGYLIKT 484 (875)
Q Consensus 470 ~~~~a~~~~~~~~~~ 484 (875)
+...|...+....+.
T Consensus 156 n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 156 NLRDANELFDTFTSK 170 (260)
T ss_dssp BHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 666666666655544
No 405
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=55.26 E-value=2.3e+02 Score=28.29 Aligned_cols=19 Identities=0% Similarity=0.181 Sum_probs=11.4
Q ss_pred ccHHHHHHHHHHcCCchHH
Q 002834 557 TPWNLMIRVYAENDFPNQA 575 (875)
Q Consensus 557 ~~~~~l~~~~~~~~~~~~A 575 (875)
..|..|+.+++..|+.+-.
T Consensus 322 K~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HhhhHHHHHHhcCChHHHH
Confidence 3466666666666665543
No 406
>PRK10941 hypothetical protein; Provisional
Probab=55.22 E-value=61 Score=32.16 Aligned_cols=64 Identities=9% Similarity=-0.129 Sum_probs=35.2
Q ss_pred HHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccH
Q 002834 733 LVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNY 796 (875)
Q Consensus 733 l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 796 (875)
+-.+|.+.++++.|+...+.+. ..| ++.-|.--.-.+.+.|....|..-++.-++.-|++|.+-
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 3344555556666665555553 333 334455455555566666666666666666666665543
No 407
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=54.78 E-value=2e+02 Score=29.09 Aligned_cols=130 Identities=13% Similarity=0.117 Sum_probs=87.7
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhh------cCcHHHHHHHHHHhHHHhCCCCCh
Q 002834 654 KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSH------AGLVDEGLEIFRSIEKVQGIKPTP 727 (875)
Q Consensus 654 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~------~g~~~~a~~~~~~~~~~~~~~p~~ 727 (875)
.|...|+-. -+++++.++++....+ .|........|.+|-. .-+|.....+|+.+.. +.|++
T Consensus 262 QDr~lW~r~--------lI~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~---~apSP 329 (415)
T COG4941 262 QDRSLWDRA--------LIDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ---AAPSP 329 (415)
T ss_pred cchhhhhHH--------HHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH---hCCCC
Confidence 466666632 3578888999888876 4888887777775532 3478888888887755 66765
Q ss_pred h-HHHHHHHHhhcCCChHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccH
Q 002834 728 E-QYASLVDLLARGGQISDAYSLVNRMPVEAD----CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNY 796 (875)
Q Consensus 728 ~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 796 (875)
. +.|.-+ ++....-.+.++..++-...+|. ...+..-.+.+.+.|..++|..+|++++++.++.+..-
T Consensus 330 vV~LNRAV-Ala~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~ 402 (415)
T COG4941 330 VVTLNRAV-ALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERA 402 (415)
T ss_pred eEeehHHH-HHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHH
Confidence 5 444333 33333445666777776654432 23445555678889999999999999999988766543
No 408
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=54.02 E-value=3.9e+02 Score=30.62 Aligned_cols=195 Identities=12% Similarity=0.033 Sum_probs=100.8
Q ss_pred CccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChh--hHHHHHHHHh-ccCChhhHHHHHHHHHhcCCCCc----h
Q 002834 316 DLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSV--TLVSLLPACA-YLKNLKVGKEIHGYFLRHPYLEE----D 388 (875)
Q Consensus 316 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~--t~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~----~ 388 (875)
+...|..||. .|++.++...+...+.|... ++..+...+. ...+++.|+..+.+.....-.+. .
T Consensus 29 ~l~~Y~kLI~---------~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k 99 (608)
T PF10345_consen 29 QLKQYYKLIA---------TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK 99 (608)
T ss_pred hHHHHHHHHH---------HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 4455666665 56677777764432444333 3333444433 56788899888886543322111 1
Q ss_pred hhHHHHHHHHHhcCCChhHHHHHHHhcCCC----Ccch----HHHH-HHHHhccCChhHHHHHHHHHHHCC---CCCChh
Q 002834 389 AAVGNALVSFYAKCSDMEAAYRTFLMICRR----DLIS----WNSM-LDAFSESGYNSQFLNLLNCMLMEG---IRPDSI 456 (875)
Q Consensus 389 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~----~~~l-i~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~ 456 (875)
......++..|.+.+... |.+.+++.... .... +.-+ +..+...++...|++.++.+...- ..|-..
T Consensus 100 ~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~ 178 (608)
T PF10345_consen 100 FRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF 178 (608)
T ss_pred HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence 113345567777776666 77777664321 1112 2222 222223368888888888776532 233344
Q ss_pred hHHHHHHHhhc--cCchhhHHHHHHHHHHhcCCC------CCCchhHHHHHHHHHH--hcCCHHHHHHHHHhhc
Q 002834 457 TILTIIHFCTT--VLREGMVKETHGYLIKTGLLL------GDTEHNIGNAILDAYA--KCRNIKYAFNVFQSLL 520 (875)
Q Consensus 457 t~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~------~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~ 520 (875)
.+..++.+... .+..+.+.+....+....... ..|...++..+++.++ ..|+++.+...++++.
T Consensus 179 v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 179 VLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45555555443 344566666666664322210 1234445555555443 4566555555554443
No 409
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=53.46 E-value=4.9e+02 Score=31.59 Aligned_cols=213 Identities=9% Similarity=-0.059 Sum_probs=106.9
Q ss_pred HHHHhhhcCCCCccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHhcCC
Q 002834 305 AELLFRRMKSRDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIHGYFLRHPY 384 (875)
Q Consensus 305 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 384 (875)
...+...+..+|...-...+..+.+.+.. ++...+..+... +|...-...+.++...+........+...+..
T Consensus 623 ~~~L~~~L~D~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL~D----~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~-- 695 (897)
T PRK13800 623 VAELAPYLADPDPGVRRTAVAVLTETTPP-GFGPALVAALGD----GAAAVRRAAAEGLRELVEVLPPAPALRDHLGS-- 695 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhcch-hHHHHHHHHHcC----CCHHHHHHHHHHHHHHHhccCchHHHHHHhcC--
Confidence 34555666677777777777777777654 455555555532 44444445555554443211112233333332
Q ss_pred CCchhhHHHHHHHHHhcCCChhHHHHHHHhcCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 002834 385 LEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHF 464 (875)
Q Consensus 385 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 464 (875)
++.. +....+..+...+.-+ ...+...+..+|...-...+.++.+.+..+. +.... -.++...-.....+
T Consensus 696 -~d~~-VR~~A~~aL~~~~~~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~a 765 (897)
T PRK13800 696 -PDPV-VRAAALDVLRALRAGD-AALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKG 765 (897)
T ss_pred -CCHH-HHHHHHHHHHhhccCC-HHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHH
Confidence 2222 5556666665543221 2344555666777666666777766654332 12222 12344444444444
Q ss_pred hhccCchhh-HHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcccHHHHHHHhhcCCC
Q 002834 465 CTTVLREGM-VKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGS 540 (875)
Q Consensus 465 ~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 540 (875)
+...+.... +...+..+.+ .++..+....+..+.+.|..+.+...+......++...-...+.++...+.
T Consensus 766 L~~~~~~~~~~~~~L~~ll~------D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~ 836 (897)
T PRK13800 766 LATLGAGGAPAGDAVRALTG------DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA 836 (897)
T ss_pred HHHhccccchhHHHHHHHhc------CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc
Confidence 444443322 1122222221 556667777777777777655554444444444455455555556655544
No 410
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.06 E-value=19 Score=40.80 Aligned_cols=118 Identities=14% Similarity=0.239 Sum_probs=73.5
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHH
Q 002834 669 HGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYS 748 (875)
Q Consensus 669 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 748 (875)
+.++++.+.+.+...--| .++|.-+.+.|-.+-|+.+.+.=... .+.....|+++.|++
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tR-------------F~LaLe~gnle~ale 664 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTR-------------FELALECGNLEVALE 664 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchh-------------eeeehhcCCHHHHHH
Confidence 445666655554322111 23455556777777777665433221 223456788888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHH
Q 002834 749 LVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKL 818 (875)
Q Consensus 749 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 818 (875)
..++. .|...|..|......+||.+.|+..|++.-. +..|+.+|.-.|+.++-.++.+.
T Consensus 665 ~akkl---dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn--------fekLsfLYliTgn~eKL~Km~~i 723 (1202)
T KOG0292|consen 665 AAKKL---DDKDVWERLGEEALRQGNHQIAEMCYQRTKN--------FEKLSFLYLITGNLEKLSKMMKI 723 (1202)
T ss_pred HHHhc---CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh--------hhheeEEEEEeCCHHHHHHHHHH
Confidence 87775 4667888888888888888888888887654 33455566666666655554443
No 411
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=51.07 E-value=3.2e+02 Score=28.71 Aligned_cols=31 Identities=10% Similarity=0.066 Sum_probs=21.2
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 002834 490 DTEHNIGNAILDAYAKCRNIKYAFNVFQSLL 520 (875)
Q Consensus 490 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 520 (875)
+-...++-.+...+...|+...|.+++++..
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRAL 67 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERAL 67 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555666666777777777777777776643
No 412
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=50.44 E-value=81 Score=24.65 Aligned_cols=35 Identities=14% Similarity=0.182 Sum_probs=17.8
Q ss_pred CCChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCch
Q 002834 538 CGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPN 573 (875)
Q Consensus 538 ~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 573 (875)
.|+.+.|.+++..+. .++..|..++.++...|...
T Consensus 49 ~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 49 HGNESGARELLKRIV-QKEGWFSKFLQALRETEHHE 83 (88)
T ss_pred cCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchh
Confidence 345555555555555 55555555555555555433
No 413
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=48.84 E-value=1.5e+02 Score=24.31 Aligned_cols=50 Identities=18% Similarity=0.124 Sum_probs=21.0
Q ss_pred HhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 002834 634 LYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLEL 685 (875)
Q Consensus 634 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 685 (875)
.+...|++++|...=.....||...|-+|- -.+.|-.+++...+.++..+
T Consensus 49 sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rla~~ 98 (116)
T PF09477_consen 49 SLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRLASS 98 (116)
T ss_dssp HHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHHCT-
T ss_pred HHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHHHhC
Confidence 344455555553333333345555554332 23445555555555554443
No 414
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=47.89 E-value=67 Score=26.57 Aligned_cols=26 Identities=23% Similarity=0.475 Sum_probs=23.6
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHH
Q 002834 559 WNLMIRVYAENDFPNQALSLFLKLQA 584 (875)
Q Consensus 559 ~~~l~~~~~~~~~~~~A~~~~~~m~~ 584 (875)
|..|+..|...|.+++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 77888888999999999999999877
No 415
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=47.62 E-value=1.2e+02 Score=29.78 Aligned_cols=59 Identities=19% Similarity=0.120 Sum_probs=49.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 763 GTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 763 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
.++-.++...++.+.|....++++.++|++|...---|-+|.+.|-...|++-+....+
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~ 243 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVE 243 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHH
Confidence 34446677889999999999999999999998888889999999999999997766443
No 416
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=47.31 E-value=1.3e+02 Score=25.49 Aligned_cols=59 Identities=20% Similarity=0.346 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHH
Q 002834 674 AALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLV 734 (875)
Q Consensus 674 ~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 734 (875)
+..+-++.+....+.|+......-++||.+.+|+..|.++|+-++.+ ..+....|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH
Confidence 44455667777788999999999999999999999999999888653 333333455443
No 417
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=47.26 E-value=3.5e+02 Score=28.16 Aligned_cols=103 Identities=17% Similarity=0.116 Sum_probs=54.5
Q ss_pred chHHHHHHHHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhc
Q 002834 625 VRLNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHA 704 (875)
Q Consensus 625 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~ 704 (875)
..+...|...+..+|++.+|..++.+.+ +.||.+| ..-++..-++++|. .|.-.
T Consensus 131 arlTk~L~~ike~~Gdi~~Aa~il~el~---VETygsm-------~~~ekV~fiLEQmr----------------KOG~~ 184 (439)
T KOG1498|consen 131 ARLTKMLAKIKEEQGDIAEAADILCELQ---VETYGSM-------EKSEKVAFILEQMR----------------LCLLR 184 (439)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhcc---hhhhhhh-------HHHHHHHHHHHHHH----------------HHHHh
Confidence 3455677788888999999999887765 3334332 33344444455543 23334
Q ss_pred CcHHHHHHHHHHhHHHhCCCCCh-----hHHHHHHHHhhcCCChHHHHHHHHhC
Q 002834 705 GLVDEGLEIFRSIEKVQGIKPTP-----EQYASLVDLLARGGQISDAYSLVNRM 753 (875)
Q Consensus 705 g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~ 753 (875)
+|+-.|.-+-+++...+=-.|+. ..|..|+......+.+=++-+.++..
T Consensus 185 ~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yrai 238 (439)
T KOG1498|consen 185 LDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAI 238 (439)
T ss_pred hhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHH
Confidence 44444444444443333333331 23455555555555555555444444
No 418
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=47.22 E-value=59 Score=30.42 Aligned_cols=35 Identities=20% Similarity=0.088 Sum_probs=15.0
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccC
Q 002834 756 EADCNVWGTLLGACRIHHEVELGRVVANRLFEMEA 790 (875)
Q Consensus 756 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 790 (875)
.|++.++..++.++...|+.++|++..+++..+.|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34444444444444444444444444444444444
No 419
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=46.77 E-value=96 Score=26.17 Aligned_cols=46 Identities=13% Similarity=0.079 Sum_probs=34.9
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHHHh
Q 002834 439 FLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKT 484 (875)
Q Consensus 439 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 484 (875)
..+-++.+..-.+-|++......+++|.+.+|+..+.++++-++..
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3444555556678888888888888888888888888888877654
No 420
>PF13934 ELYS: Nuclear pore complex assembly
Probab=46.35 E-value=2.8e+02 Score=26.74 Aligned_cols=19 Identities=26% Similarity=0.273 Sum_probs=8.6
Q ss_pred HHHHHhhcCcHHHHHHHHH
Q 002834 697 VLSACSHAGLVDEGLEIFR 715 (875)
Q Consensus 697 ll~a~~~~g~~~~a~~~~~ 715 (875)
++.++...|+.+.|+.+++
T Consensus 114 Il~~L~~~~~~~lAL~y~~ 132 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLR 132 (226)
T ss_pred HHHHHHHCCChhHHHHHHH
Confidence 3334444444444444443
No 421
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=46.28 E-value=1.3e+02 Score=25.76 Aligned_cols=44 Identities=14% Similarity=0.146 Sum_probs=33.6
Q ss_pred hHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhHHHHHHHh
Q 002834 371 VGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLM 414 (875)
Q Consensus 371 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 414 (875)
.+.++|..|...|+.......|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77788888888887776666778888888888888888887754
No 422
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=45.70 E-value=3.8e+02 Score=28.11 Aligned_cols=51 Identities=16% Similarity=0.173 Sum_probs=31.1
Q ss_pred HHhhcCcHHHHHHHHHHhHHHhCCCCC--hhHHHHHHHHh-hcCCChHHHHHHHHhC
Q 002834 700 ACSHAGLVDEGLEIFRSIEKVQGIKPT--PEQYASLVDLL-ARGGQISDAYSLVNRM 753 (875)
Q Consensus 700 a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~-~~~g~~~~A~~~~~~~ 753 (875)
.+.+.|-+..|+++.+-+.. +.|+ +-.-..+++.| .+++.++--+++++..
T Consensus 112 ~L~~RG~~rTAlE~~KlLls---Ldp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLLS---LDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHhcCcHHHHHHHHHHHHh---cCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 56667777777777766644 5554 23444455555 4666666666666654
No 423
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=44.56 E-value=4e+02 Score=27.97 Aligned_cols=124 Identities=10% Similarity=0.047 Sum_probs=73.6
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhH--------HHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC----hhHHHHHHHH
Q 002834 669 HGMGKAALKVFSDMLELGVNPDHVVI--------TAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT----PEQYASLVDL 736 (875)
Q Consensus 669 ~g~~~~A~~~~~~m~~~g~~p~~~~~--------~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~ 736 (875)
..++.+|.++-+.....-..-|..|+ ..+-.++-..|+...-...+....+...+.-| ....+++++.
T Consensus 139 ~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~ 218 (493)
T KOG2581|consen 139 QKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRN 218 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHH
Confidence 35666666666555443222333333 33333445566766666666655544444433 3356777888
Q ss_pred hhcCCChHHHHHHHHhCCCCC--CHHHHHH---HH-HHHHhcCChhHHHHHHHHHhcccCCC
Q 002834 737 LARGGQISDAYSLVNRMPVEA--DCNVWGT---LL-GACRIHHEVELGRVVANRLFEMEADN 792 (875)
Q Consensus 737 ~~~~g~~~~A~~~~~~~~~~p--~~~~~~~---l~-~~~~~~~~~~~a~~~~~~~~~~~p~~ 792 (875)
|...+.++.|..++.+...+. +..-|.. ++ ..-..++++..|.+.+-+++...|++
T Consensus 219 yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 219 YLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 888889999999988875222 2223332 22 23345788888888888888887763
No 424
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=44.28 E-value=67 Score=30.04 Aligned_cols=53 Identities=17% Similarity=0.102 Sum_probs=38.2
Q ss_pred hhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC
Q 002834 702 SHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP 754 (875)
Q Consensus 702 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 754 (875)
....+.+......+.+.+.....|+...|..++.++...|+.++|.+...++.
T Consensus 119 ~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 119 RLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35556555555555555545577888888888888888888888888887774
No 425
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=44.20 E-value=39 Score=31.86 Aligned_cols=54 Identities=9% Similarity=0.133 Sum_probs=48.5
Q ss_pred HhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 002834 770 RIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTRD 823 (875)
Q Consensus 770 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 823 (875)
...+|.+.+-+++.+++++-|+....|..++...-+.|+.+.|.+-++...+..
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 356889999999999999999999999999999999999999999887776544
No 426
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=43.99 E-value=2.3e+02 Score=24.98 Aligned_cols=52 Identities=17% Similarity=0.132 Sum_probs=39.5
Q ss_pred CcchHHHHHHHHhccCC-hhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCc
Q 002834 419 DLISWNSMLDAFSESGY-NSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLR 470 (875)
Q Consensus 419 ~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 470 (875)
+..+|.+++.+..+..- ---+..+|+-|.+.+.+++..-|..++++|.+...
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g~~ 130 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRGYF 130 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Confidence 55678888888866655 44567788888888888888888888888876543
No 427
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=43.91 E-value=3.2e+02 Score=30.05 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=18.9
Q ss_pred HHHHHhHhcCCHHHHHHHhccCC
Q 002834 630 ALLHLYAKCGSIFSASKIFQCHP 652 (875)
Q Consensus 630 ~l~~~~~~~g~~~~A~~~~~~~~ 652 (875)
.++.-|.+.+++++|..++..|.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Confidence 56667888899999988888876
No 428
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=43.16 E-value=1.7e+02 Score=28.81 Aligned_cols=44 Identities=18% Similarity=0.216 Sum_probs=31.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhhccCC---CcccHHHHHHHh
Q 002834 492 EHNIGNAILDAYAKCRNIKYAFNVFQSLLEKR---NLVTFNPVISGY 535 (875)
Q Consensus 492 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p---~~~~~~~l~~~~ 535 (875)
.+.+...-|-.|.+.|+...+.++-..-...| +...|.+++.-|
T Consensus 117 PpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELy 163 (309)
T PF07163_consen 117 PPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELY 163 (309)
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHH
Confidence 34444556677888888888888877776654 445688877776
No 429
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=42.74 E-value=3.7e+02 Score=27.07 Aligned_cols=131 Identities=15% Similarity=0.102 Sum_probs=73.3
Q ss_pred cCCHHHHHHHhccCCCC-ChhhHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhc-------C
Q 002834 638 CGSIFSASKIFQCHPQK-DVVMLTAMIGGYAM----HGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHA-------G 705 (875)
Q Consensus 638 ~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~-------g 705 (875)
..+..+|.+.|....+. .......|...|.. ..+..+|..+|++..+.|..+...+...+...+... -
T Consensus 90 ~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~ 169 (292)
T COG0790 90 SRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAY 169 (292)
T ss_pred cccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccH
Confidence 44566777777755543 33344445555544 337788999999998888665422222233333322 1
Q ss_pred cHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhh----cCCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 002834 706 LVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLA----RGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHH 773 (875)
Q Consensus 706 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~ 773 (875)
+...|...+.++.. .+ +......+...|. -..+.++|..+++.....-+. .....++.+...|
T Consensus 170 ~~~~A~~~~~~aa~-~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~~-~a~~~~~~~~~~g 236 (292)
T COG0790 170 DDKKALYLYRKAAE-LG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGDG-AACYNLGLMYLNG 236 (292)
T ss_pred HHHhHHHHHHHHHH-hc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCH-HHHHHHHHHHhcC
Confidence 33478888888866 23 3334444444453 344788999999887533333 2233333444444
No 430
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=42.69 E-value=3.1e+02 Score=26.27 Aligned_cols=86 Identities=14% Similarity=0.239 Sum_probs=41.0
Q ss_pred cccchHHHHHHHHHHHHhcCC-CchHHHHHHHHhHhcCCHHHHHHHhcc----------------CCCCChhhHHHHHHH
Q 002834 603 QMASVHLLRQCHGYVIRACFD-GVRLNGALLHLYAKCGSIFSASKIFQC----------------HPQKDVVMLTAMIGG 665 (875)
Q Consensus 603 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~----------------~~~~~~~~~~~li~~ 665 (875)
+..+...-..+.+.+...+++ +.....+++ +...|++.+|+..++. ..+|.+.....++..
T Consensus 171 klsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~ 248 (333)
T KOG0991|consen 171 KLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQA 248 (333)
T ss_pred ccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHH
Confidence 333333334444444444444 444444433 3345666666554442 122444444444444
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCh
Q 002834 666 YAMHGMGKAALKVFSDMLELGVNPDH 691 (875)
Q Consensus 666 ~~~~g~~~~A~~~~~~m~~~g~~p~~ 691 (875)
+. .+++++|.+++.++.+.|+.|..
T Consensus 249 ~~-~~~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 249 CL-KRNIDEALKILAELWKLGYSPED 273 (333)
T ss_pred HH-hccHHHHHHHHHHHHHcCCCHHH
Confidence 33 33566666666666666666543
No 431
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=42.59 E-value=60 Score=32.00 Aligned_cols=58 Identities=10% Similarity=0.168 Sum_probs=28.3
Q ss_pred cCCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccH
Q 002834 739 RGGQISDAYSLVNRM-PVEADC-NVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNY 796 (875)
Q Consensus 739 ~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 796 (875)
+.|+.++|..+++.. ...|+. .++..+....-.+++.-+|.+.|-+++...|.|..++
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseAL 187 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEAL 187 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHH
Confidence 345555555555443 233322 3333333333344555556666666666666555443
No 432
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.34 E-value=2.1e+02 Score=29.85 Aligned_cols=59 Identities=12% Similarity=0.087 Sum_probs=45.9
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHhcCCC------CcchHHHHHHHHhccCChhHHHHHHHHHHHC
Q 002834 391 VGNALVSFYAKCSDMEAAYRTFLMICRR------DLISWNSMLDAFSESGYNSQFLNLLNCMLME 449 (875)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 449 (875)
...-+.+.|..+|+++.|.+.+.+...- .+..|-.+|..-...|+|........+..+.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 6778889999999999999999886431 3345667777888888888888887776653
No 433
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=41.91 E-value=3.7e+02 Score=26.83 Aligned_cols=56 Identities=16% Similarity=0.163 Sum_probs=34.4
Q ss_pred HHHHHHHhhcCCChHHHHHHHHhhhcCCCcc---HHHHHHHHHHcCCchHHHHHHHHHH
Q 002834 528 FNPVISGYANCGSADEAFMTFSRIYARDLTP---WNLMIRVYAENDFPNQALSLFLKLQ 583 (875)
Q Consensus 528 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~m~ 583 (875)
.+.....|..+|.+.+|.++.++....++-. |-.|+..+...|+--.|.+-++++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3344455666666666666666665544443 6666666677777666666666653
No 434
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=41.90 E-value=3.7e+02 Score=26.86 Aligned_cols=51 Identities=16% Similarity=0.251 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHhcC-----CCCcchHHHHHHHHhccCChhHHHH
Q 002834 391 VGNALVSFYAKCSDMEAAYRTFLMIC-----RRDLISWNSMLDAFSESGYNSQFLN 441 (875)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~ 441 (875)
+....+..++..+++..-.++++... ..|...|..+|..-...|+..-...
T Consensus 204 vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~k 259 (292)
T PF13929_consen 204 VIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRK 259 (292)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHH
Confidence 55556666666666666666665542 2366677777777777777554433
No 435
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=41.42 E-value=38 Score=35.80 Aligned_cols=104 Identities=13% Similarity=0.097 Sum_probs=71.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHH-HHHhhcCcHHHHHHHHHHhHHHhCCCCChh-HHHHHHHHhhcC
Q 002834 663 IGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVL-SACSHAGLVDEGLEIFRSIEKVQGIKPTPE-QYASLVDLLARG 740 (875)
Q Consensus 663 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll-~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~ 740 (875)
...+...+.++.|+.++.+.++ ..||-..|...= .++.+.+++..|+.=+..+.+ ..|+.. .|..-+.++.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie---~dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIE---LDPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhh---cCchhhheeeeccHHHHhH
Confidence 4445566788999999999988 578766654443 578888888888877766665 446533 555555666667
Q ss_pred CChHHHHHHHHhCC-CCCCHHHHHHHHHHHHh
Q 002834 741 GQISDAYSLVNRMP-VEADCNVWGTLLGACRI 771 (875)
Q Consensus 741 g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~ 771 (875)
+++.+|...++... ..|+..-....+.-|..
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 77888887777764 67766555555555543
No 436
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=40.54 E-value=1e+02 Score=34.60 Aligned_cols=67 Identities=15% Similarity=0.227 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh----------hHHHHHHHHhhcCcHHHHHHHHHHhHHHhC-CCCC
Q 002834 658 MLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHV----------VITAVLSACSHAGLVDEGLEIFRSIEKVQG-IKPT 726 (875)
Q Consensus 658 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----------~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~~p~ 726 (875)
+...++-.|....+++..+++.+.++. -||.. .|...++-=-+-|+-++|+...-.+.+..| +.||
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHh---CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 444555566666667777777777665 23211 122222222345666667666666655332 4454
Q ss_pred h
Q 002834 727 P 727 (875)
Q Consensus 727 ~ 727 (875)
.
T Consensus 280 m 280 (1226)
T KOG4279|consen 280 M 280 (1226)
T ss_pred e
Confidence 3
No 437
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=40.00 E-value=1.6e+02 Score=23.18 Aligned_cols=35 Identities=6% Similarity=0.023 Sum_probs=18.2
Q ss_pred cCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChH
Q 002834 638 CGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGK 673 (875)
Q Consensus 638 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 673 (875)
.|+.+.|.+++..+. ..+..+...+.++...|...
T Consensus 49 ~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 49 HGNESGARELLKRIV-QKEGWFSKFLQALRETEHHE 83 (88)
T ss_pred cCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchh
Confidence 355555555555555 44445555555555554443
No 438
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=38.46 E-value=97 Score=27.09 Aligned_cols=67 Identities=9% Similarity=-0.061 Sum_probs=45.2
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhH
Q 002834 743 ISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGV 812 (875)
Q Consensus 743 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 812 (875)
-+.|.++++-|. ...............|++.-|.++...++..+|+|...-...+++|.+.|.-.+.
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~ 123 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSEN 123 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SS
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccC
Confidence 355666666653 2233334445566789999999999999999999999999999988887765443
No 439
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=38.08 E-value=68 Score=23.24 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=17.3
Q ss_pred ChhhHHHHHHHHhhcCcHHHHHHHHHHhHH
Q 002834 690 DHVVITAVLSACSHAGLVDEGLEIFRSIEK 719 (875)
Q Consensus 690 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 719 (875)
|......++.++...|++++|.++++++.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344444556666666666666666666654
No 440
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=38.00 E-value=1.5e+02 Score=24.49 Aligned_cols=26 Identities=15% Similarity=0.423 Sum_probs=19.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q 002834 659 LTAMIGGYAMHGMGKAALKVFSDMLE 684 (875)
Q Consensus 659 ~~~li~~~~~~g~~~~A~~~~~~m~~ 684 (875)
|..|+.-|..+|..++|++++.+..+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 66777777777777777777777665
No 441
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=37.90 E-value=4.5e+02 Score=26.69 Aligned_cols=159 Identities=13% Similarity=0.077 Sum_probs=88.5
Q ss_pred CChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHH
Q 002834 539 GSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVI 618 (875)
Q Consensus 539 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~ 618 (875)
++.+....++..+.+.+..||...+ +..+.++-=..++..|.+.+ ...+++-.+..+.+.
T Consensus 36 ~~~~~~e~l~~~Ird~~Map~Ye~l---ce~~~i~~D~~~l~~m~~~n-----------------eeki~eld~~iedae 95 (393)
T KOG0687|consen 36 QKAAAREKLLAAIRDEDMAPLYEYL---CESLVIKLDQDLLNSMKKAN-----------------EEKIKELDEKIEDAE 95 (393)
T ss_pred cCHHHHHHHHHHHHhcccchHHHHH---HhhcceeccHHHHHHHHHhh-----------------HHHHHHHHHHHHHHH
Confidence 4555566666666777777743333 33333333334444554332 111222222222222
Q ss_pred Hh-cCC-CchHHHHHHHHhHhcCCHHHHHHHhccCCC--------CChhhHHH-HHHHHHHcCChHHHHHHHHHHHHCCC
Q 002834 619 RA-CFD-GVRLNGALLHLYAKCGSIFSASKIFQCHPQ--------KDVVMLTA-MIGGYAMHGMGKAALKVFSDMLELGV 687 (875)
Q Consensus 619 ~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~ 687 (875)
+. |-. -..+......-|++-|+.+.|.+.+.+..+ -|++.+.. |.-.|..+.-..+-++..+.+.+.|-
T Consensus 96 enlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~Gg 175 (393)
T KOG0687|consen 96 ENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGG 175 (393)
T ss_pred HhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCC
Confidence 22 333 455666778889999999999998886543 34444333 22334445455677777777888776
Q ss_pred CCChh----hHHHHHHHHhhcCcHHHHHHHHHHhHH
Q 002834 688 NPDHV----VITAVLSACSHAGLVDEGLEIFRSIEK 719 (875)
Q Consensus 688 ~p~~~----~~~~ll~a~~~~g~~~~a~~~~~~~~~ 719 (875)
.-+.. +|..+ -|....++.+|-.+|-+...
T Consensus 176 DWeRrNRlKvY~Gl--y~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 176 DWERRNRLKVYQGL--YCMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred ChhhhhhHHHHHHH--HHHHHHhHHHHHHHHHHHcc
Confidence 65543 33332 24456688888888876654
No 442
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=37.31 E-value=90 Score=21.16 Aligned_cols=36 Identities=11% Similarity=0.063 Sum_probs=27.5
Q ss_pred HHHHcCCCcchHHHHHHHHHhCCCCCChhhHHhHHH
Q 002834 220 SGLSENKVLGDAFRLFSWMLTEPIKPNYATILNILP 255 (875)
Q Consensus 220 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~ 255 (875)
....+.|-..++..+++.|.+.|+..+...+..+++
T Consensus 10 ~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 10 LLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 344678888899999999999998877666665554
No 443
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=37.05 E-value=3.6e+02 Score=25.30 Aligned_cols=35 Identities=17% Similarity=0.172 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh
Q 002834 657 VMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHV 692 (875)
Q Consensus 657 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 692 (875)
...+.++..+...|+++.|-+.|--++... +.|..
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR 76 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIR 76 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChH
Confidence 456677888888888888888888887753 34433
No 444
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=36.70 E-value=2.1e+02 Score=22.63 Aligned_cols=62 Identities=16% Similarity=0.033 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCC--CccHHHHHHHHHhcCCch-hHHHHHHHH
Q 002834 758 DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADN--IGNYVVMSNLYAADARWD-GVVEIRKLM 819 (875)
Q Consensus 758 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~-~A~~~~~~~ 819 (875)
|......+...+...|+++.|.+.+-.+++.+|.. ...-..|..++...|.-+ -+.+.+++|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 33455555556666666666666666666666543 344455555555555533 333344444
No 445
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=36.65 E-value=4.9e+02 Score=26.78 Aligned_cols=29 Identities=10% Similarity=0.311 Sum_probs=21.0
Q ss_pred HHHHhhcCcHHHHHHHHHHhHHHhCCCCC
Q 002834 698 LSACSHAGLVDEGLEIFRSIEKVQGIKPT 726 (875)
Q Consensus 698 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 726 (875)
..-+.++|-.+.|..+++.+.+-.=..|.
T Consensus 161 ~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~ 189 (321)
T PF08424_consen 161 CRFLRQAGYTERAVALWQALLEFNFFRPE 189 (321)
T ss_pred HHHHHHCCchHHHHHHHHHHHHHHcCCcc
Confidence 33456789999999999999884333554
No 446
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.63 E-value=6.3e+02 Score=28.01 Aligned_cols=95 Identities=14% Similarity=0.111 Sum_probs=61.7
Q ss_pred HHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhh-ccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHh
Q 002834 427 LDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCT-TVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAK 505 (875)
Q Consensus 427 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 505 (875)
|..+.+.|-+..|+++-+-+......-|......+|..|+ +..++...+++++.....+....-|+.....+++..|.+
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~ 428 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLR 428 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHh
Confidence 5567788999999998888887665556666777777664 556677777777777654433335555555566666665
Q ss_pred cCC---HHHHHHHHHhhcc
Q 002834 506 CRN---IKYAFNVFQSLLE 521 (875)
Q Consensus 506 ~g~---~~~A~~~~~~~~~ 521 (875)
... -+.|...+.+...
T Consensus 429 ~~~~~~rqsa~~~l~qAl~ 447 (665)
T KOG2422|consen 429 KNEEDDRQSALNALLQALK 447 (665)
T ss_pred cCChhhHHHHHHHHHHHHH
Confidence 554 3445555555444
No 447
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=35.41 E-value=2.1e+02 Score=26.22 Aligned_cols=38 Identities=11% Similarity=0.044 Sum_probs=25.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhccCCCcccHHHHHHHh
Q 002834 498 AILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGY 535 (875)
Q Consensus 498 ~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~ 535 (875)
..+-.|.+.|.+++|.++++.....|+......-+...
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL~~I 153 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFSDPESQKLRMKLLMI 153 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhcCCCchhHHHHHHHH
Confidence 45567778888888888888877766555544444333
No 448
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=35.17 E-value=55 Score=24.99 Aligned_cols=45 Identities=9% Similarity=0.104 Sum_probs=33.4
Q ss_pred hcCChhHHHHHHHHHhcccCCCCccHHHHH---HHHHhcCCchhHHHH
Q 002834 771 IHHEVELGRVVANRLFEMEADNIGNYVVMS---NLYAADARWDGVVEI 815 (875)
Q Consensus 771 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~---~~~~~~g~~~~A~~~ 815 (875)
..++.+.|+..++++++..++.+.-+.+|| .+|...|++.++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888887777666554 556777888887773
No 449
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=34.71 E-value=1.4e+02 Score=23.33 Aligned_cols=50 Identities=12% Similarity=0.075 Sum_probs=27.4
Q ss_pred CcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCch
Q 002834 524 NLVTFNPVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPN 573 (875)
Q Consensus 524 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 573 (875)
.+.+....-..-....+.+.+.++++.+...|+..|..+.+++...|...
T Consensus 29 ~Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~ 78 (84)
T cd08326 29 GVFTPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTD 78 (84)
T ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchH
Confidence 34444333333334455666666666666666666666666666555443
No 450
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=34.16 E-value=3e+02 Score=30.30 Aligned_cols=97 Identities=12% Similarity=0.109 Sum_probs=56.4
Q ss_pred hcCCChHHHHHHHHhhhc----CCCccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHH
Q 002834 536 ANCGSADEAFMTFSRIYA----RDLTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLR 611 (875)
Q Consensus 536 ~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~ 611 (875)
.-.|+...|...+..... ....+...|.+...+.|-..+|-.++.+..... ...+.++..+-+++.-..+++.|.
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHH
Confidence 345777777777766532 234446666667777777777777766655433 333445555555555556666666
Q ss_pred HHHHHHHHhcCCCchHHHHHHH
Q 002834 612 QCHGYVIRACFDGVRLNGALLH 633 (875)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~l~~ 633 (875)
+.+..+.+..+.++...+.|..
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSLKL 718 (886)
T ss_pred HHHHHHHhcCCCChhhHHHHHH
Confidence 6665555555554444444443
No 451
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=33.66 E-value=1.2e+02 Score=20.54 Aligned_cols=35 Identities=23% Similarity=0.245 Sum_probs=25.0
Q ss_pred HHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHH
Q 002834 429 AFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIH 463 (875)
Q Consensus 429 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 463 (875)
...+.|-..++..++++|.+.|+..+...+..++.
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 34466777788888888888887777777766554
No 452
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=33.58 E-value=5e+02 Score=27.32 Aligned_cols=54 Identities=9% Similarity=-0.119 Sum_probs=31.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHH----HHh--hcCcHHHHHHHHHH
Q 002834 663 IGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLS----ACS--HAGLVDEGLEIFRS 716 (875)
Q Consensus 663 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~----a~~--~~g~~~~a~~~~~~ 716 (875)
+..+...+++..|.++|+++.....+|....+...+. +|. ..-++++|.+.++.
T Consensus 137 ~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 137 ARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 3455567788888888888887755555444322222 222 24456666666653
No 453
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=33.54 E-value=2.1e+02 Score=30.89 Aligned_cols=57 Identities=12% Similarity=0.314 Sum_probs=30.3
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 002834 729 QYASLVDLLARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLFEM 788 (875)
Q Consensus 729 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 788 (875)
.|...+.-|.-.++|++|.++..-.. ....|.+|.+....+.++.-++.+|-.+.+.
T Consensus 575 py~~iL~e~~sssKWeqavRLCrfv~---eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~i 631 (737)
T KOG1524|consen 575 PYPEILHEYLSSSKWEQAVRLCRFVQ---EQTMWATLAAVAVRKHQMQISEIAYAAALQI 631 (737)
T ss_pred ccHHHHHHHhccchHHHHHHHHHhcc---chHHHHHHHHHHHhhccccHHHHHHHHhhch
Confidence 34444445555566666666555432 2345555555555555555555555555444
No 454
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.46 E-value=6.5e+02 Score=29.54 Aligned_cols=132 Identities=11% Similarity=0.062 Sum_probs=87.9
Q ss_pred HHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHH
Q 002834 633 HLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLE 712 (875)
Q Consensus 633 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~ 712 (875)
.+...||+++.|++.-.++. |..+|..|+..-...|+.+-|+..|++.+. |..|--.|.-.|+.++-.+
T Consensus 651 ~LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~K 719 (1202)
T KOG0292|consen 651 ELALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSK 719 (1202)
T ss_pred eeehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHH
Confidence 45567999999998887776 667899999999999999999999988754 2222224556778887766
Q ss_pred HHHHhHHHhCCCCChh-HHHHHHHHhhcCCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhccc
Q 002834 713 IFRSIEKVQGIKPTPE-QYASLVDLLARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLFEME 789 (875)
Q Consensus 713 ~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 789 (875)
+.+.+.. +-|.. .|... .-.|+.++-.++++....-|- .|.+ ...+|.-+.|++..+.+-..+
T Consensus 720 m~~iae~----r~D~~~~~qna----lYl~dv~ervkIl~n~g~~~l--aylt----a~~~G~~~~ae~l~ee~~~~~ 783 (1202)
T KOG0292|consen 720 MMKIAEI----RNDATGQFQNA----LYLGDVKERVKILENGGQLPL--AYLT----AAAHGLEDQAEKLGEELEKQV 783 (1202)
T ss_pred HHHHHHh----hhhhHHHHHHH----HHhccHHHHHHHHHhcCcccH--HHHH----HhhcCcHHHHHHHHHhhcccc
Confidence 6554422 23322 22211 124888888888887754331 1111 236788888988888776633
No 455
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=33.46 E-value=4.1e+02 Score=28.13 Aligned_cols=53 Identities=9% Similarity=0.061 Sum_probs=40.0
Q ss_pred HHhhcCcHHHHHHHHHHhHHHhCCCCChh--HHHHHHHHh--hcCCChHHHHHHHHhCC
Q 002834 700 ACSHAGLVDEGLEIFRSIEKVQGIKPTPE--QYASLVDLL--ARGGQISDAYSLVNRMP 754 (875)
Q Consensus 700 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~--~~~~l~~~~--~~~g~~~~A~~~~~~~~ 754 (875)
.+...+++..|.++|+.+.+. ++++.. .+..+..+| ...-++++|.+.++...
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r--l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR--LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh--CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 455788999999999999884 566554 555666656 45678889999998864
No 456
>PF13934 ELYS: Nuclear pore complex assembly
Probab=33.32 E-value=4.5e+02 Score=25.35 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=10.2
Q ss_pred HHHHHHHcCChHHHHHHHHH
Q 002834 662 MIGGYAMHGMGKAALKVFSD 681 (875)
Q Consensus 662 li~~~~~~g~~~~A~~~~~~ 681 (875)
++.++...|+.+.|+.+++.
T Consensus 114 Il~~L~~~~~~~lAL~y~~~ 133 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRA 133 (226)
T ss_pred HHHHHHHCCChhHHHHHHHh
Confidence 44444445555555555544
No 457
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.54 E-value=1e+03 Score=29.16 Aligned_cols=23 Identities=26% Similarity=0.170 Sum_probs=15.1
Q ss_pred HHHHHhHhcCCHHHHHHHhccCC
Q 002834 630 ALLHLYAKCGSIFSASKIFQCHP 652 (875)
Q Consensus 630 ~l~~~~~~~g~~~~A~~~~~~~~ 652 (875)
.+..+|..+|+..+|...|.+..
T Consensus 925 mlg~~yl~tge~~kAl~cF~~a~ 947 (1480)
T KOG4521|consen 925 MLGIAYLGTGEPVKALNCFQSAL 947 (1480)
T ss_pred hhheeeecCCchHHHHHHHHHHh
Confidence 34445777788888877776543
No 458
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=32.23 E-value=50 Score=28.23 Aligned_cols=32 Identities=25% Similarity=0.311 Sum_probs=24.2
Q ss_pred HHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHH
Q 002834 567 AENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPV 600 (875)
Q Consensus 567 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a 600 (875)
...|.-.+|..+|++|.+.|-.||. +..|+..
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 4557778899999999999998884 4455543
No 459
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=31.18 E-value=6.4e+02 Score=27.17 Aligned_cols=161 Identities=6% Similarity=-0.014 Sum_probs=0.0
Q ss_pred ChhHHHHHhhhcCCCCccchHHHHHHHHcCCC-----------HHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCCh
Q 002834 301 RTEEAELLFRRMKSRDLVSWNAIIAGYASNDE-----------WLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNL 369 (875)
Q Consensus 301 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-----------~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~ 369 (875)
++++|.++.+.++ ....+...+...-+.|. +++-+++++.+.+.| .......-+++|.+.+++
T Consensus 29 d~~eav~y~k~~p--~~k~f~~~L~~a~~~g~~l~QPR~G~~~~~e~i~lL~~l~~~g----~ad~lp~TIDSyTR~n~y 102 (480)
T TIGR01503 29 DLQDAVDYHKSIP--AHKNFAEKLELAKKKGKTMAQPRAGVALLDEHIELLRTLQEEG----GADFLPSTIDAYTRQNRY 102 (480)
T ss_pred CHHHHHHHHHhCC--ccccHHHHHHHHHhcCCEeecCCCCCCcHHHHHHHHHHHHHcc----CCCccceeeecccccccH
Q ss_pred hhHHHHHHHHHh------cCCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcCCC-----CcchHHHHHHHHhccC----
Q 002834 370 KVGKEIHGYFLR------HPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRR-----DLISWNSMLDAFSESG---- 434 (875)
Q Consensus 370 ~~a~~~~~~~~~------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g---- 434 (875)
+.|+..++.-.+ +|++.-+. -++..+++.+.+..| ...--..|.......|
T Consensus 103 ~~A~~~l~~s~~~~~s~LNGfP~Vnh--------------Gv~~~R~l~~~v~~PvQvRHGtpDarlL~e~~~a~G~~a~ 168 (480)
T TIGR01503 103 DEAAVGIKESIKAGRSLLNGFPGVNH--------------GVKGCRKVLEAVNLPLQIRHGTPDARLLAEIILAGGFTSF 168 (480)
T ss_pred HHHHHHHHhhhhcCcccccCCCcccc--------------cHHHHHHHHHhCCCCeeccCCCCcHHHHHHHHHHcCCCcc
Q ss_pred ----------------------ChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCc
Q 002834 435 ----------------------YNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTE 492 (875)
Q Consensus 435 ----------------------~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 492 (875)
+|+.+-++.-...+.|+..+..+|..|...++ +|+
T Consensus 169 EGG~ISYnlPYsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FGpLtgtLv-----------------------PPs 225 (480)
T TIGR01503 169 EGGGISYNIPYAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFGPLTGTLV-----------------------PPS 225 (480)
T ss_pred CCCcceeccccCCCCCHHHHHHHHHHHHHHHHHHHhcCceeccccccCCCCCcc-----------------------ChH
Q ss_pred hhHHHHHHHHHH
Q 002834 493 HNIGNAILDAYA 504 (875)
Q Consensus 493 ~~~~~~li~~~~ 504 (875)
..+...++.++.
T Consensus 226 isiav~ilE~Ll 237 (480)
T TIGR01503 226 ISNAIGIIEGLL 237 (480)
T ss_pred HHHHHHHHHHHH
No 460
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=30.91 E-value=7.2e+02 Score=26.93 Aligned_cols=63 Identities=11% Similarity=0.129 Sum_probs=47.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhCCCcCCCc
Q 002834 764 TLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTRDLKKPAA 829 (875)
Q Consensus 764 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 829 (875)
.-..++....++..+++-.+...-..-+.+....+-++.++..|++.+|.+++.. .++.+.+|
T Consensus 211 ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~---sni~~~~g 273 (696)
T KOG2471|consen 211 YKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLV---SNIHKEAG 273 (696)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHh---cccccccC
Confidence 3445556667888888888888777777777888889999999999999997654 34555555
No 461
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=30.75 E-value=1.4e+02 Score=27.25 Aligned_cols=38 Identities=16% Similarity=0.253 Sum_probs=22.5
Q ss_pred HHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHH
Q 002834 766 LGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYA 804 (875)
Q Consensus 766 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 804 (875)
...|.+.|.+++|.+++++.++ +|++...-.-|..+-.
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~ 155 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIR 155 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHH
Confidence 3456677777777777777766 6655544444444433
No 462
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=30.32 E-value=70 Score=27.39 Aligned_cols=32 Identities=22% Similarity=0.216 Sum_probs=23.8
Q ss_pred HcCCCcchHHHHHHHHHhCCCCCChhhHHhHHHH
Q 002834 223 SENKVLGDAFRLFSWMLTEPIKPNYATILNILPI 256 (875)
Q Consensus 223 ~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~ 256 (875)
-..|.-..|..+|+.|.++|-.|| .|..|+..
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 345777889999999999999997 34444443
No 463
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=29.74 E-value=3.2e+02 Score=22.53 Aligned_cols=90 Identities=11% Similarity=0.044 Sum_probs=53.4
Q ss_pred ccCchHHHHHHHHHHHHhcCCCCchhhhHHHHHHHccCCchHHHHhhccCCCCCchhHHHHHHHHhcCCCChhHHHHHHH
Q 002834 55 SLADILLGKALHGYVTKLGHISCQAVSKALLNLYAKCGVIDDCYKLFGQVDNTDPVTWNILLSGFACSHVDDARVMNLFY 134 (875)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~a~~~~~ 134 (875)
......+|..|.+.....+-. ...+.-.-+..+.+.|++++|...=.....||...|-+|-.. +.| -..++...+.
T Consensus 18 G~HcH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a~--klG-L~~~~e~~l~ 93 (116)
T PF09477_consen 18 GHHCHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCAW--KLG-LASALESRLT 93 (116)
T ss_dssp TTT-HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHHH--HCT--HHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHHH--hhc-cHHHHHHHHH
Confidence 344567777777776665531 222222234557789999999655566677899988777553 567 7777778888
Q ss_pred HhHhcCCCCCCcchHH
Q 002834 135 NMHVRDQPKPNSVTVA 150 (875)
Q Consensus 135 ~m~~~~~~~~~~~~~~ 150 (875)
++..+| .|....|.
T Consensus 94 rla~~g--~~~~q~Fa 107 (116)
T PF09477_consen 94 RLASSG--SPELQAFA 107 (116)
T ss_dssp HHCT-S--SHHHHHHH
T ss_pred HHHhCC--CHHHHHHH
Confidence 887777 44444443
No 464
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=29.74 E-value=96 Score=30.92 Aligned_cols=39 Identities=18% Similarity=0.214 Sum_probs=30.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHH
Q 002834 659 LTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAV 697 (875)
Q Consensus 659 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 697 (875)
||..|..-.+.|++++|+.++++..+.|+.--..+|...
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 668888888889999999999999888877666665443
No 465
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=29.53 E-value=4.5e+02 Score=26.84 Aligned_cols=79 Identities=15% Similarity=0.061 Sum_probs=51.1
Q ss_pred HHHHhHhcCCHHHHHHHhccCCC-------CChhhHH--HHHHHHHHcCChHHHHHHHHHHHH-----CCCCCChhh-HH
Q 002834 631 LLHLYAKCGSIFSASKIFQCHPQ-------KDVVMLT--AMIGGYAMHGMGKAALKVFSDMLE-----LGVNPDHVV-IT 695 (875)
Q Consensus 631 l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~-~~ 695 (875)
++.....+++.++|.+.++++.+ |+.+.|- .++..+...|+..++.+++++..+ .|++|+..+ |.
T Consensus 81 ~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY 160 (380)
T KOG2908|consen 81 LLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFY 160 (380)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHH
Confidence 33344455677777777776543 5665443 456667788999999999988887 678886654 55
Q ss_pred HHHHH-HhhcCcHHH
Q 002834 696 AVLSA-CSHAGLVDE 709 (875)
Q Consensus 696 ~ll~a-~~~~g~~~~ 709 (875)
.+-.- |-..|++..
T Consensus 161 ~lssqYyk~~~d~a~ 175 (380)
T KOG2908|consen 161 SLSSQYYKKIGDFAS 175 (380)
T ss_pred HHHHHHHHHHHhHHH
Confidence 55553 344555544
No 466
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=29.44 E-value=2e+02 Score=30.49 Aligned_cols=64 Identities=13% Similarity=0.214 Sum_probs=36.3
Q ss_pred HHHHHhhcCCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchh
Q 002834 732 SLVDLLARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDG 811 (875)
Q Consensus 732 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 811 (875)
.|++.++-.|++..|++.++.+...... .+ ...-+-...++..+|-.|...+|+.+
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~-l~-----------------------~~V~~~~is~~YyvGFaylMlrRY~D 182 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKG-LY-----------------------TKVPACHISTYYYVGFAYLMLRRYAD 182 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccch-hh-----------------------ccCcchheehHHHHHHHHHHHHHHHH
Confidence 4455666677777777777766421110 00 01122245566677777777777777
Q ss_pred HHHHHHHH
Q 002834 812 VVEIRKLM 819 (875)
Q Consensus 812 A~~~~~~~ 819 (875)
|++++...
T Consensus 183 Air~f~~i 190 (404)
T PF10255_consen 183 AIRTFSQI 190 (404)
T ss_pred HHHHHHHH
Confidence 77765544
No 467
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=28.97 E-value=4.7e+02 Score=24.25 Aligned_cols=93 Identities=11% Similarity=0.058 Sum_probs=55.6
Q ss_pred CCCCcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHHHhcCCC-------
Q 002834 416 CRRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLL------- 488 (875)
Q Consensus 416 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------- 488 (875)
..+..+.|.....+-++.-+.+++.+.+-- .+=.+++-.|.+..++.++.++++.+.+..+..
T Consensus 103 Kdk~~vPFceFAetV~k~~q~~e~dK~~LG----------RiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~ 172 (233)
T PF14669_consen 103 KDKPGVPFCEFAETVCKDPQNDEVDKTLLG----------RIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLT 172 (233)
T ss_pred cccCCCCHHHHHHHHhcCCccchhhhhhhh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcc
Confidence 334455666666666666555554433311 122355666777778888888887776644321
Q ss_pred ----CCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 002834 489 ----GDTEHNIGNAILDAYAKCRNIKYAFNVFQS 518 (875)
Q Consensus 489 ----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 518 (875)
..+.-.+.|.....+.++|.++.|..++++
T Consensus 173 g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 173 GPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred CccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 122234556677777788888888877774
No 468
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=28.97 E-value=3.8e+02 Score=25.67 Aligned_cols=20 Identities=15% Similarity=0.396 Sum_probs=11.0
Q ss_pred HHHHhhcCcHHHHHHHHHHh
Q 002834 698 LSACSHAGLVDEGLEIFRSI 717 (875)
Q Consensus 698 l~a~~~~g~~~~a~~~~~~~ 717 (875)
+......|++++|.+...+.
T Consensus 71 Ir~~I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 71 IRRAIEEGQIEEAIEKVNQL 90 (228)
T ss_pred HHHHHHhccHHHHHHHHHHh
Confidence 33445566666666655544
No 469
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=28.85 E-value=2.9e+02 Score=22.01 Aligned_cols=53 Identities=11% Similarity=0.130 Sum_probs=27.2
Q ss_pred HHcCChHHHHHHHHHHHH----CCCCCC----hhhHHHHHHHHhhcCcHHHHHHHHHHhHH
Q 002834 667 AMHGMGKAALKVFSDMLE----LGVNPD----HVVITAVLSACSHAGLVDEGLEIFRSIEK 719 (875)
Q Consensus 667 ~~~g~~~~A~~~~~~m~~----~g~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 719 (875)
.+.|++..|++.+.+..+ .+..+. ......+.......|..++|.+.+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 355666666555544433 222221 11222233345566777777777777665
No 470
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=28.74 E-value=3.7e+02 Score=22.97 Aligned_cols=44 Identities=7% Similarity=0.055 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhHHHHHHH
Q 002834 370 KVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFL 413 (875)
Q Consensus 370 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 413 (875)
+....+|..|.+.++.......|......+-..|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34566777777777766666567777777777788888777775
No 471
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=28.68 E-value=72 Score=31.75 Aligned_cols=41 Identities=12% Similarity=0.106 Sum_probs=33.9
Q ss_pred eHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCChhhHHhHH
Q 002834 214 SWNAVISGLSENKVLGDAFRLFSWMLTEPIKPNYATILNIL 254 (875)
Q Consensus 214 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll 254 (875)
-|+..|....+.||+++|+.++++.++.|+.--..||...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 47799999999999999999999999998876555554443
No 472
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=28.37 E-value=55 Score=24.86 Aligned_cols=23 Identities=13% Similarity=0.024 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHhcCCccCC
Q 002834 853 DMIYWVLSILDEQIKDQVTISEI 875 (875)
Q Consensus 853 ~~~~~~~~~l~~~~~~~~~~~~~ 875 (875)
.+|...+++-...++.+||.|||
T Consensus 8 i~il~~ie~~inELk~dG~ePDi 30 (85)
T PF08967_consen 8 IRILELIEEKINELKEDGFEPDI 30 (85)
T ss_dssp HHHHHHHHHHHHHHHHTT----E
T ss_pred HHHHHHHHHHHHHHHhcCCCCCE
Confidence 45677777777888889999996
No 473
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=28.21 E-value=90 Score=30.99 Aligned_cols=77 Identities=6% Similarity=0.079 Sum_probs=54.6
Q ss_pred CCCChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHH-HHHHHhcCChhHHHHHHHHHhcccCCCCccHHHH
Q 002834 723 IKPTPEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTL-LGACRIHHEVELGRVVANRLFEMEADNIGNYVVM 799 (875)
Q Consensus 723 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 799 (875)
..-|+..|...+.--.+.|.+.+...++.+.. ..| |...|-.- ..-+..++|++.+..++.+.+.++|++|..|...
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 34455566655555556677777777776663 444 66777652 2335678999999999999999999999977644
No 474
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=28.11 E-value=1.6e+02 Score=28.86 Aligned_cols=19 Identities=16% Similarity=0.247 Sum_probs=10.4
Q ss_pred HHhhcCcHHHHHHHHHHhH
Q 002834 700 ACSHAGLVDEGLEIFRSIE 718 (875)
Q Consensus 700 a~~~~g~~~~a~~~~~~~~ 718 (875)
-|.+.|++++|.++|+.+.
T Consensus 187 ey~~~g~~~~A~~~l~~~~ 205 (247)
T PF11817_consen 187 EYFRLGDYDKALKLLEPAA 205 (247)
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 4555555555555555553
No 475
>PRK14700 recombination factor protein RarA; Provisional
Probab=27.97 E-value=2.7e+02 Score=27.99 Aligned_cols=57 Identities=9% Similarity=0.120 Sum_probs=40.7
Q ss_pred HHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhccc-----chHHHHHHHHHHHHhcCC
Q 002834 567 AENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMA-----SVHLLRQCHGYVIRACFD 623 (875)
Q Consensus 567 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~-----~~~~a~~~~~~~~~~~~~ 623 (875)
.+..+++.|+-.+-+|.+.|-.|....-..++-|....| .+..+...++.....|.+
T Consensus 137 iRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~P 198 (300)
T PRK14700 137 VRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMP 198 (300)
T ss_pred hhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCh
Confidence 677899999999999999998888777777777776665 233444444444455554
No 476
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=27.86 E-value=60 Score=23.61 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=20.1
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCChh
Q 002834 330 NDEWLKALNLFCELITKEMIWPDSV 354 (875)
Q Consensus 330 ~g~~~~a~~~~~~m~~~~~~~pd~~ 354 (875)
.-+++.|+..|.++...|.++|+.+
T Consensus 38 ~Wd~~~Al~~F~~lk~~~~IP~eAF 62 (63)
T smart00804 38 NWDYERALKNFTELKSEGSIPPEAF 62 (63)
T ss_pred CCCHHHHHHHHHHHHhcCCCChhhc
Confidence 4589999999999998876776653
No 477
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=27.78 E-value=46 Score=25.53 Aligned_cols=64 Identities=13% Similarity=0.139 Sum_probs=36.0
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 742 QISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 742 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
.++.|.+.+++.. .+-..|+.+.|...|++.++.--+-..+-+- .....-.|++|.++..+|+.
T Consensus 4 ~~~~A~~~I~kaL-------------~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~---~~~~~~~w~~ar~~~~Km~~ 67 (79)
T cd02679 4 YYKQAFEEISKAL-------------RADEWGDKEQALAHYRKGLRELEEGIAVPVP---SAGVGSQWERARRLQQKMKT 67 (79)
T ss_pred HHHHHHHHHHHHh-------------hhhhcCCHHHHHHHHHHHHHHHHHHcCCCCC---cccccHHHHHHHHHHHHHHH
Confidence 4566666666542 1113477777777777776531110000000 23445679999999998875
No 478
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=26.91 E-value=68 Score=31.79 Aligned_cols=80 Identities=9% Similarity=0.005 Sum_probs=49.1
Q ss_pred CCChhh-HHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHH
Q 002834 688 NPDHVV-ITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGT 764 (875)
Q Consensus 688 ~p~~~~-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ 764 (875)
.|+..+ |...+.--.+.|.+.+...+|.++...+....|...+.| ..-|...++++.+..++.... ..| ++..|..
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c-~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCC-AFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeec-cchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 455444 444444444567888888899888774333333333322 233456788999999988774 455 4577877
Q ss_pred HHHH
Q 002834 765 LLGA 768 (875)
Q Consensus 765 l~~~ 768 (875)
+...
T Consensus 182 yfr~ 185 (435)
T COG5191 182 YFRM 185 (435)
T ss_pred HHHH
Confidence 6643
No 479
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=26.85 E-value=2.8e+02 Score=31.01 Aligned_cols=91 Identities=16% Similarity=0.124 Sum_probs=61.1
Q ss_pred hHHHHhHhcCChhHHHHHhhhcCCC------CccchHHHHHHHHcCCCHH--HHHHHHHHHHHcCCCCCChhhHHHHHHH
Q 002834 291 ALVSFYLRFGRTEEAELLFRRMKSR------DLVSWNAIIAGYASNDEWL--KALNLFCELITKEMIWPDSVTLVSLLPA 362 (875)
Q Consensus 291 ~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~~~~~pd~~t~~~ll~~ 362 (875)
+|..+|...|++-.+..+++..... =...||..|+.+.+.|.++ +..+-..+..+...+.-|..||..++.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 7889999999999999999887642 2346888999999999764 2222223333322256789999999888
Q ss_pred HhccCChhhHHHHHHHHHh
Q 002834 363 CAYLKNLKVGKEIHGYFLR 381 (875)
Q Consensus 363 ~~~~~~~~~a~~~~~~~~~ 381 (875)
.....+-..+.-++...+.
T Consensus 113 sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 113 SLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred hcChHhHHhccHHHHHHHH
Confidence 7664444444444444433
No 480
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=26.81 E-value=1.1e+02 Score=22.19 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=19.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH
Q 002834 660 TAMIGGYAMHGMGKAALKVFSDMLE 684 (875)
Q Consensus 660 ~~li~~~~~~g~~~~A~~~~~~m~~ 684 (875)
-..|.+|...|++++|.+.++++.+
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3578889999999999998888765
No 481
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=26.48 E-value=6.8e+02 Score=25.27 Aligned_cols=72 Identities=11% Similarity=0.213 Sum_probs=47.4
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhc----------CCChHH
Q 002834 676 LKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLAR----------GGQISD 745 (875)
Q Consensus 676 ~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----------~g~~~~ 745 (875)
.++|+.|.+.++.|.-..|.-+.-.+++.=.+.+.+.+|+.+..+ ..-|..|+.+|+. .|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD------~~rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD------PQRFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC------hhhhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 467788888888888888777777777777788888888877652 1124444433332 466666
Q ss_pred HHHHHHhC
Q 002834 746 AYSLVNRM 753 (875)
Q Consensus 746 A~~~~~~~ 753 (875)
-+++++.-
T Consensus 337 nmkLLQ~y 344 (370)
T KOG4567|consen 337 NMKLLQNY 344 (370)
T ss_pred HHHHHhcC
Confidence 66666654
No 482
>PRK13342 recombination factor protein RarA; Reviewed
Probab=26.46 E-value=8.3e+02 Score=26.25 Aligned_cols=37 Identities=14% Similarity=0.198 Sum_probs=25.7
Q ss_pred HHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhc
Q 002834 567 AENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQ 603 (875)
Q Consensus 567 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~ 603 (875)
++.++++.|+..+..|.+.|..|....-..+..++..
T Consensus 241 ~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ed 277 (413)
T PRK13342 241 IRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASED 277 (413)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 3457888899999999998887765554444444433
No 483
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=25.86 E-value=7.4e+02 Score=25.47 Aligned_cols=21 Identities=19% Similarity=0.110 Sum_probs=15.3
Q ss_pred HHhcCChhHHHHHHHHHhccc
Q 002834 769 CRIHHEVELGRVVANRLFEME 789 (875)
Q Consensus 769 ~~~~~~~~~a~~~~~~~~~~~ 789 (875)
++..|-.+.|..+++-++|++
T Consensus 164 l~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 164 LRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHCCchHHHHHHHHHHHHHH
Confidence 345677888888888877765
No 484
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=25.74 E-value=1.3e+03 Score=28.11 Aligned_cols=118 Identities=12% Similarity=0.123 Sum_probs=58.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCChhh--HHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCCh--hHHHHHHHHhh
Q 002834 663 IGGYAMHGMGKAALKVFSDMLELGVNPDHVV--ITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTP--EQYASLVDLLA 738 (875)
Q Consensus 663 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~ 738 (875)
+.++.....++++.+.+.. .+|.... |..+..-+.-.++.+.-..+.+.+.+ +...... ......+.+|.
T Consensus 742 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 815 (932)
T PRK13184 742 LEALSNKEDYEKAFKHLDN-----TDPTLILYAFDLFAIQALLDEEGESIIQLLQLIYD-YVSEEERHDHLLVYEIQAHL 815 (932)
T ss_pred HHHHHccccHHHHHhhhhh-----CCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHh-ccCChhhhhhhhHHHHHHHH
Confidence 4444445555665554433 3343332 23333333333444444444444433 2222221 12334567777
Q ss_pred cCCChHHHHHHHHhCCCC--CCHHHHHHHHHHHHh--cCChhHHHHHHHHHh
Q 002834 739 RGGQISDAYSLVNRMPVE--ADCNVWGTLLGACRI--HHEVELGRVVANRLF 786 (875)
Q Consensus 739 ~~g~~~~A~~~~~~~~~~--p~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~ 786 (875)
-..++++|.++++..+.. -+...+...+.+|+- -++-+.|...+....
T Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (932)
T PRK13184 816 WNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCYLALTEDREAAKAHFSGCR 867 (932)
T ss_pred HhccHHHHHHHHHhCChhhhccccchHHHHHHHHHHhcCchhHHHHHHhhcc
Confidence 778888888888777521 222334444555543 356666666665554
No 485
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=25.04 E-value=1.1e+03 Score=27.19 Aligned_cols=48 Identities=10% Similarity=0.074 Sum_probs=31.0
Q ss_pred hHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcCCCC
Q 002834 371 VGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRRD 419 (875)
Q Consensus 371 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 419 (875)
--.++++.+++.-...+.+ -|..+.++|....+.+.+.++++++.+.|
T Consensus 193 fR~~vlr~lv~~y~~~~~P-Dy~~vc~c~v~Ldd~~~va~ll~kL~~e~ 240 (929)
T KOG2062|consen 193 FRNKVLRLLVKTYLKLPSP-DYFSVCQCYVFLDDAEAVADLLEKLVKED 240 (929)
T ss_pred HHHHHHHHHHHHHccCCCC-CeeeeeeeeEEcCCHHHHHHHHHHHHhcc
Confidence 3344555555544444444 55677778888888888888888876654
No 486
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=25.03 E-value=2.7e+02 Score=22.06 Aligned_cols=34 Identities=9% Similarity=0.075 Sum_probs=21.2
Q ss_pred cCCChHHHHHHHHhhhcCCCccHHHHHHHHHHcC
Q 002834 537 NCGSADEAFMTFSRIYARDLTPWNLMIRVYAEND 570 (875)
Q Consensus 537 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 570 (875)
...+.+++.++++.+...|+..|..+..++...+
T Consensus 46 ~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~ 79 (90)
T cd08332 46 KPTSFSQNVALLNLLPKRGPRAFSAFCEALRETS 79 (90)
T ss_pred CCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcC
Confidence 3345566666666666666666666666665444
No 487
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=24.99 E-value=2.9e+02 Score=29.31 Aligned_cols=66 Identities=11% Similarity=0.102 Sum_probs=40.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccCCCcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCchHH
Q 002834 496 GNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQA 575 (875)
Q Consensus 496 ~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 575 (875)
...|++.++-.|++..|+++++.+.-... ..| .+.....+.+|.-+.-+|.-.+++.+|
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~-~l~--------------------~~V~~~~is~~YyvGFaylMlrRY~DA 183 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKK-GLY--------------------TKVPACHISTYYYVGFAYLMLRRYADA 183 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccc-hhh--------------------ccCcchheehHHHHHHHHHHHHHHHHH
Confidence 35677888888999999999887654311 011 111222233345555556777777777
Q ss_pred HHHHHHH
Q 002834 576 LSLFLKL 582 (875)
Q Consensus 576 ~~~~~~m 582 (875)
++.|...
T Consensus 184 ir~f~~i 190 (404)
T PF10255_consen 184 IRTFSQI 190 (404)
T ss_pred HHHHHHH
Confidence 7777664
No 488
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=24.28 E-value=1.3e+02 Score=25.91 Aligned_cols=36 Identities=11% Similarity=0.199 Sum_probs=29.7
Q ss_pred EEEeCCEEeEEecCC-CCCCChHHHHHHHHHHHHHHH
Q 002834 832 WIEVERKNNAFMAGD-YSHPRRDMIYWVLSILDEQIK 867 (875)
Q Consensus 832 ~~~~~~~~~~f~~~~-~~~~~~~~~~~~~~~l~~~~~ 867 (875)
|+.-.+....|+.|| .-+|+..++-.+|++|.+++.
T Consensus 30 ~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~ 66 (132)
T PRK11509 30 WLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFP 66 (132)
T ss_pred HHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhc
Confidence 444455667799999 778999999999999998875
No 489
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=24.25 E-value=4.5e+02 Score=22.44 Aligned_cols=44 Identities=18% Similarity=0.120 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 002834 473 MVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQS 518 (875)
Q Consensus 473 ~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 518 (875)
.+.++|..|...|+. ......|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG--~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIG--TKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTS--TTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCcc--HHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 566666666666652 44555677777888888888888888764
No 490
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=23.70 E-value=3.8e+02 Score=25.82 Aligned_cols=105 Identities=17% Similarity=0.157 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHH
Q 002834 670 GMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSL 749 (875)
Q Consensus 670 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 749 (875)
|+++.|+++.+-+++.| .|.+..|..=..++.-..-.+-|...+. .|-..++.....+...-...
T Consensus 97 Gd~~~AL~ia~yAI~~~-l~~Pd~f~R~~~t~vaeev~~~A~~~~~-----ag~~~e~~~~~~~~~l~~~~--------- 161 (230)
T PHA02537 97 GDFDGALEIAEYALEHG-LTMPDQFRRTLANFVAEEVANAALKAAS-----AGESVEPYFLRVFLDLTTEW--------- 161 (230)
T ss_pred cCHHHHHHHHHHHHHcC-CCCCccccCCchHHHHHHHHHHHHHHHH-----cCCCCChHHHHHHHHHHhcC---------
Q ss_pred HHhCCCCCCHHHHHHHHHHH---------HhcCChhHHHHHHHHHhcccCC
Q 002834 750 VNRMPVEADCNVWGTLLGAC---------RIHHEVELGRVVANRLFEMEAD 791 (875)
Q Consensus 750 ~~~~~~~p~~~~~~~l~~~~---------~~~~~~~~a~~~~~~~~~~~p~ 791 (875)
.|+.+.....+......+ ...++...|...++++++++|+
T Consensus 162 --dmpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 162 --DMPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred --CCChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC
No 491
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=23.66 E-value=8.8e+02 Score=25.59 Aligned_cols=52 Identities=10% Similarity=-0.008 Sum_probs=36.1
Q ss_pred HHHHHhHhcCCHHHHHHHhccCCCCC--------hhhHHHHHHHHH--HcCChHHHHHHHHH
Q 002834 630 ALLHLYAKCGSIFSASKIFQCHPQKD--------VVMLTAMIGGYA--MHGMGKAALKVFSD 681 (875)
Q Consensus 630 ~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~li~~~~--~~g~~~~A~~~~~~ 681 (875)
..+..+.+.+++..|.++|+++.... ...|-.+..+|. ..-++++|.+.+++
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 34456678899999999999877532 224445556655 35577889988886
No 492
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=23.31 E-value=7e+02 Score=24.26 Aligned_cols=159 Identities=12% Similarity=0.060 Sum_probs=75.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhh-cCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcC
Q 002834 662 MIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSH-AGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARG 740 (875)
Q Consensus 662 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 740 (875)
++...-+.|++++.+..++++...+...+..--+.+-.+|-. -|..-.+++++..+.....-..+ .....++.-|...
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~-~~~~~~i~~yk~k 85 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN-EKQVKLIKDYKKK 85 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch-hHHHHHHHHHHHH
Confidence 556667788888888888888887666665544444444422 34445556666555443222222 1111222111110
Q ss_pred ------CChHHHHHHHHhCC----CCCCH-HH--------HHHHHHHH---HhcCChhHHHHHHHHHhc-----ccCCCC
Q 002834 741 ------GQISDAYSLVNRMP----VEADC-NV--------WGTLLGAC---RIHHEVELGRVVANRLFE-----MEADNI 793 (875)
Q Consensus 741 ------g~~~~A~~~~~~~~----~~p~~-~~--------~~~l~~~~---~~~~~~~~a~~~~~~~~~-----~~p~~~ 793 (875)
.--.+.+.+++... ..+.. +. |..+...- .+..-.+.|..+|+++++ +.|.+|
T Consensus 86 ie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p 165 (236)
T PF00244_consen 86 IEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHP 165 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCc
Confidence 01133444444432 11111 11 11121110 011124677888888776 456565
Q ss_pred ccHH---HHHHH-HHhcCCchhHHHHHHHHHh
Q 002834 794 GNYV---VMSNL-YAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 794 ~~~~---~l~~~-~~~~g~~~~A~~~~~~~~~ 821 (875)
..+- ..+.. |--.|+.++|.++-+..-+
T Consensus 166 ~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 166 LRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4322 22323 4558999999998665543
No 493
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=23.30 E-value=1.4e+02 Score=19.07 Aligned_cols=20 Identities=10% Similarity=0.383 Sum_probs=10.7
Q ss_pred cHHHHHHHHHhcCCchhHHH
Q 002834 795 NYVVMSNLYAADARWDGVVE 814 (875)
Q Consensus 795 ~~~~l~~~~~~~g~~~~A~~ 814 (875)
.|..||.+-...++|++|.+
T Consensus 3 v~~~Lgeisle~e~f~qA~~ 22 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIE 22 (38)
T ss_pred HHHHHHHHHHHhccHHHHHH
Confidence 34555555555555555555
No 494
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=23.19 E-value=4.4e+02 Score=21.93 Aligned_cols=37 Identities=11% Similarity=0.146 Sum_probs=19.6
Q ss_pred HHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHH
Q 002834 778 GRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVE 814 (875)
Q Consensus 778 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 814 (875)
+.+.+.+...+.|..+..++.|++-+....-|+++.+
T Consensus 63 sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~ 99 (111)
T PF04781_consen 63 SVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVK 99 (111)
T ss_pred hHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4455666666666665555555554444444444443
No 495
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=23.11 E-value=4.6e+02 Score=22.15 Aligned_cols=24 Identities=21% Similarity=0.123 Sum_probs=14.0
Q ss_pred hHHHHHHHHhhcCCChHHHHHHHH
Q 002834 728 EQYASLVDLLARGGQISDAYSLVN 751 (875)
Q Consensus 728 ~~~~~l~~~~~~~g~~~~A~~~~~ 751 (875)
.++..|..++...|++++++.-.+
T Consensus 56 ~chA~Ls~A~~~Lgry~e~L~sA~ 79 (144)
T PF12968_consen 56 FCHAGLSGALAGLGRYDECLQSAD 79 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHH
Confidence 345566667777777777655433
No 496
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=23.07 E-value=5.4e+02 Score=28.95 Aligned_cols=24 Identities=8% Similarity=0.259 Sum_probs=12.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhcc
Q 002834 498 AILDAYAKCRNIKYAFNVFQSLLE 521 (875)
Q Consensus 498 ~li~~~~~~g~~~~A~~~~~~~~~ 521 (875)
.|..+|...|++-.+..+++....
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~ 56 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFID 56 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc
Confidence 444555555555555555554443
No 497
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=22.89 E-value=1.3e+03 Score=27.20 Aligned_cols=26 Identities=15% Similarity=0.176 Sum_probs=16.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhcc
Q 002834 496 GNAILDAYAKCRNIKYAFNVFQSLLE 521 (875)
Q Consensus 496 ~~~li~~~~~~g~~~~A~~~~~~~~~ 521 (875)
|..-|..|-..|+++.|..+......
T Consensus 638 ~~~sI~LY~lag~yd~al~link~LS 663 (835)
T KOG2168|consen 638 FEDAILLYHLAGDYDKALELINKLLS 663 (835)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 34555666677777777777666544
No 498
>PRK13342 recombination factor protein RarA; Reviewed
Probab=22.87 E-value=9.7e+02 Score=25.75 Aligned_cols=43 Identities=21% Similarity=0.166 Sum_probs=29.6
Q ss_pred HHHHHHHHhc---cCChhHHHHHHHHHHHCCCCCChhhHHHHHHHh
Q 002834 423 WNSMLDAFSE---SGYNSQFLNLLNCMLMEGIRPDSITILTIIHFC 465 (875)
Q Consensus 423 ~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 465 (875)
+..++.++.+ .++.+.|+..+..|++.|..|....-..++.++
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4444555444 478999999999999999888755544444443
No 499
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=22.69 E-value=1.6e+02 Score=30.75 Aligned_cols=17 Identities=12% Similarity=0.171 Sum_probs=10.0
Q ss_pred HHHHHHhCCCcCCCcee
Q 002834 815 IRKLMKTRDLKKPAACS 831 (875)
Q Consensus 815 ~~~~~~~~~~~~~~~~s 831 (875)
+|.+|.+..+...+..|
T Consensus 309 yWqamiEeAiTr~esfs 325 (569)
T PF15015_consen 309 YWQAMIEEAITRAESFS 325 (569)
T ss_pred HHHHHHHHHHhccccee
Confidence 36677665555555544
No 500
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.33 E-value=1.1e+03 Score=26.04 Aligned_cols=27 Identities=7% Similarity=0.049 Sum_probs=22.2
Q ss_pred HHcCCchHHHHHHHHHHHCCCCCCcch
Q 002834 567 AENDFPNQALSLFLKLQAQGMKPDAVT 593 (875)
Q Consensus 567 ~~~~~~~~A~~~~~~m~~~g~~p~~~~ 593 (875)
.+.++++.|+.++.+|...|..|....
T Consensus 254 i~~~d~~~Al~~l~~ll~~Gedp~~i~ 280 (472)
T PRK14962 254 IFNGDVKRVFTVLDDVYYSGKDYEVLI 280 (472)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 677899999999999999888776543
Done!