Query 002834
Match_columns 875
No_of_seqs 637 out of 4690
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 03:28:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002834.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002834hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.9E-38 6.4E-43 362.6 37.0 497 294-803 61-594 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.4E-36 4.7E-41 347.1 36.3 503 86-738 61-595 (597)
3 1w3b_A UDP-N-acetylglucosamine 99.9 5.3E-25 1.8E-29 236.0 37.4 369 429-808 8-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 99.9 3.1E-24 1E-28 230.1 37.3 349 462-821 6-367 (388)
5 4g26_A Pentatricopeptide repea 99.9 1.8E-26 6.3E-31 250.0 14.0 215 20-260 3-223 (501)
6 4g26_A Pentatricopeptide repea 99.9 8E-25 2.7E-29 237.2 18.2 184 7-194 27-223 (501)
7 2y4t_A DNAJ homolog subfamily 99.9 3E-22 1E-26 219.5 26.2 322 490-818 23-405 (450)
8 1xi4_A Clathrin heavy chain; a 99.9 2.5E-17 8.6E-22 187.7 63.5 730 9-816 485-1339(1630)
9 1xi4_A Clathrin heavy chain; a 99.9 3E-17 1E-21 187.1 63.4 729 9-814 514-1376(1630)
10 2gw1_A Mitochondrial precursor 99.9 2.6E-21 8.8E-26 216.3 30.1 238 559-799 240-489 (514)
11 2gw1_A Mitochondrial precursor 99.9 8E-21 2.7E-25 212.3 31.8 259 559-821 189-477 (514)
12 3fp2_A TPR repeat-containing p 99.9 1.3E-19 4.3E-24 203.7 31.1 216 601-821 253-490 (537)
13 2y4t_A DNAJ homolog subfamily 99.9 1.4E-19 4.7E-24 198.3 29.8 345 419-793 25-415 (450)
14 3fp2_A TPR repeat-containing p 99.9 2.9E-19 9.8E-24 200.8 33.1 255 540-797 217-500 (537)
15 3ieg_A DNAJ homolog subfamily 99.8 7.4E-18 2.5E-22 178.2 28.7 303 494-803 4-350 (359)
16 3ieg_A DNAJ homolog subfamily 99.8 1.2E-17 4.2E-22 176.5 30.4 314 524-868 2-355 (359)
17 3hym_B Cell division cycle pro 99.8 4.8E-17 1.6E-21 169.7 27.4 285 490-810 19-322 (330)
18 3hym_B Cell division cycle pro 99.8 1.8E-16 6.1E-21 165.4 26.7 257 559-820 25-297 (330)
19 1fch_A Peroxisomal targeting s 99.7 4.1E-17 1.4E-21 173.2 21.3 255 559-817 67-354 (368)
20 3mkr_A Coatomer subunit epsilo 99.7 5.4E-16 1.8E-20 156.9 24.0 271 501-814 7-286 (291)
21 2xm6_A Protein corresponding t 99.7 1.4E-14 4.8E-19 159.7 36.9 363 391-806 41-453 (490)
22 1b89_A Protein (clathrin heavy 99.7 1.5E-15 5E-20 155.9 26.3 280 89-441 14-303 (449)
23 4g1t_A Interferon-induced prot 99.7 1.3E-15 4.4E-20 167.8 26.2 150 671-833 315-470 (472)
24 2ooe_A Cleavage stimulation fa 99.7 3.4E-14 1.2E-18 158.3 37.6 404 391-822 15-492 (530)
25 1b89_A Protein (clathrin heavy 99.7 5.5E-16 1.9E-20 159.0 19.4 282 298-678 15-304 (449)
26 2xm6_A Protein corresponding t 99.7 6E-14 2.1E-18 154.6 36.1 316 494-823 76-433 (490)
27 4eqf_A PEX5-related protein; a 99.7 6.6E-16 2.2E-20 163.6 19.4 257 524-818 64-352 (365)
28 1fch_A Peroxisomal targeting s 99.7 7.3E-16 2.5E-20 163.5 19.6 284 567-867 36-344 (368)
29 3cv0_A Peroxisome targeting si 99.7 1.6E-15 5.4E-20 157.9 19.1 256 524-818 20-311 (327)
30 4eqf_A PEX5-related protein; a 99.7 1.9E-15 6.4E-20 160.1 19.8 218 602-821 76-309 (365)
31 2ooe_A Cleavage stimulation fa 99.7 1.3E-13 4.5E-18 153.5 34.9 399 285-720 12-492 (530)
32 3mkr_A Coatomer subunit epsilo 99.6 1.8E-14 6.1E-19 145.7 20.9 236 497-780 38-286 (291)
33 3cv0_A Peroxisome targeting si 99.6 4.1E-14 1.4E-18 147.1 23.4 261 494-791 22-318 (327)
34 2pl2_A Hypothetical conserved 99.6 1.5E-14 5.1E-19 139.6 17.1 191 624-819 4-211 (217)
35 3spa_A Mtrpol, DNA-directed RN 99.6 2.7E-16 9.3E-21 173.9 3.9 151 74-226 123-286 (1134)
36 4g1t_A Interferon-induced prot 99.6 1E-12 3.5E-17 144.5 32.3 148 641-800 316-471 (472)
37 3spa_A Mtrpol, DNA-directed RN 99.6 2E-15 7E-20 167.0 7.1 125 624-749 126-258 (1134)
38 3uq3_A Heat shock protein STI1 99.6 1.7E-13 5.9E-18 136.8 20.1 215 559-821 8-235 (258)
39 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.9E-13 6.6E-18 138.0 17.8 239 535-816 15-269 (275)
40 3u4t_A TPR repeat-containing p 99.5 2.7E-12 9.1E-17 129.3 26.0 241 531-807 9-269 (272)
41 3uq3_A Heat shock protein STI1 99.5 2.3E-13 7.9E-18 135.8 17.6 237 525-802 5-256 (258)
42 3e4b_A ALGK; tetratricopeptide 99.5 7.3E-13 2.5E-17 143.3 21.3 342 461-824 9-389 (452)
43 2h6f_A Protein farnesyltransfe 99.5 6E-13 2E-17 139.0 18.5 242 559-806 100-366 (382)
44 3e4b_A ALGK; tetratricopeptide 99.5 2.4E-12 8.3E-17 139.2 23.1 375 426-821 9-420 (452)
45 2ho1_A Type 4 fimbrial biogene 99.5 1.3E-12 4.6E-17 129.7 18.3 196 625-822 37-238 (252)
46 2vq2_A PILW, putative fimbrial 99.5 2.9E-12 1E-16 124.6 19.6 196 624-821 7-210 (225)
47 2q7f_A YRRB protein; TPR, prot 99.5 6.2E-13 2.1E-17 131.3 14.8 188 631-821 29-221 (243)
48 2h6f_A Protein farnesyltransfe 99.5 1E-12 3.6E-17 137.1 16.9 222 593-819 99-344 (382)
49 2q7f_A YRRB protein; TPR, prot 99.4 1E-12 3.6E-17 129.7 15.9 216 589-807 21-241 (243)
50 1ouv_A Conserved hypothetical 99.4 1.2E-11 4.2E-16 124.3 22.8 221 557-823 7-252 (273)
51 3vtx_A MAMA; tetratricopeptide 99.4 5.3E-12 1.8E-16 118.3 18.7 163 655-822 4-170 (184)
52 4abn_A Tetratricopeptide repea 99.4 4.6E-13 1.6E-17 145.9 12.2 201 610-815 87-314 (474)
53 3u4t_A TPR repeat-containing p 99.4 6.4E-12 2.2E-16 126.4 19.7 225 559-822 6-250 (272)
54 2pl2_A Hypothetical conserved 99.4 4.8E-12 1.6E-16 121.9 17.3 110 639-753 98-211 (217)
55 1ouv_A Conserved hypothetical 99.4 2.9E-11 1E-15 121.6 23.7 150 638-794 91-257 (273)
56 2ho1_A Type 4 fimbrial biogene 99.4 6E-12 2.1E-16 125.0 18.4 201 559-797 40-247 (252)
57 4a1s_A PINS, partner of inscut 99.4 1.7E-12 5.7E-17 139.9 14.5 264 527-820 50-370 (411)
58 2vq2_A PILW, putative fimbrial 99.4 1.1E-11 3.6E-16 120.7 18.3 203 559-799 11-222 (225)
59 1xnf_A Lipoprotein NLPI; TPR, 99.4 1.8E-12 6E-17 130.9 12.5 216 602-822 16-244 (275)
60 3sf4_A G-protein-signaling mod 99.4 5.5E-12 1.9E-16 135.5 16.6 286 525-810 9-364 (406)
61 3sf4_A G-protein-signaling mod 99.4 1.8E-12 6.1E-17 139.4 12.1 264 490-753 6-333 (406)
62 3ro2_A PINS homolog, G-protein 99.4 5.2E-12 1.8E-16 131.7 15.2 262 529-821 9-331 (338)
63 4gyw_A UDP-N-acetylglucosamine 99.3 1.6E-11 5.6E-16 138.6 18.1 161 655-820 8-172 (723)
64 3vtx_A MAMA; tetratricopeptide 99.3 1.6E-11 5.5E-16 115.0 14.9 166 624-793 4-175 (184)
65 4i17_A Hypothetical protein; T 99.3 5.9E-11 2E-15 115.6 17.0 152 655-809 6-169 (228)
66 4a1s_A PINS, partner of inscut 99.3 2.4E-11 8.3E-16 130.7 14.7 268 494-791 49-375 (411)
67 3ulq_A Response regulator aspa 99.3 6E-11 2E-15 126.0 16.8 163 657-820 185-366 (383)
68 2ond_A Cleavage stimulation fa 99.3 1.8E-10 6.1E-15 117.9 19.7 182 608-793 81-275 (308)
69 3ro2_A PINS homolog, G-protein 99.3 4.1E-11 1.4E-15 124.7 15.1 267 495-791 7-335 (338)
70 4e6h_A MRNA 3'-END-processing 99.3 6.5E-09 2.2E-13 115.9 32.6 425 334-794 49-576 (679)
71 2ond_A Cleavage stimulation fa 99.2 3.7E-10 1.3E-14 115.6 21.0 211 608-823 33-271 (308)
72 4e6h_A MRNA 3'-END-processing 99.2 7.2E-09 2.5E-13 115.6 32.4 423 315-770 64-585 (679)
73 3as5_A MAMA; tetratricopeptide 99.2 1.3E-10 4.5E-15 108.8 15.6 160 659-821 11-172 (186)
74 4abn_A Tetratricopeptide repea 99.2 1.1E-10 3.7E-15 127.1 17.0 176 641-821 84-286 (474)
75 3as5_A MAMA; tetratricopeptide 99.2 6.9E-10 2.4E-14 103.8 18.4 168 626-796 9-181 (186)
76 4i17_A Hypothetical protein; T 99.2 2.8E-10 9.5E-15 110.8 16.0 201 592-804 8-225 (228)
77 3q15_A PSP28, response regulat 99.2 1.1E-09 3.8E-14 115.9 21.4 230 560-820 105-363 (378)
78 3nf1_A KLC 1, kinesin light ch 99.2 2E-10 6.9E-15 118.0 14.5 230 592-821 28-306 (311)
79 1hz4_A MALT regulatory protein 99.2 9.3E-09 3.2E-13 108.6 26.8 194 628-821 96-321 (373)
80 3ulq_A Response regulator aspa 99.1 2.7E-10 9.4E-15 120.9 14.3 289 503-791 22-371 (383)
81 3nf1_A KLC 1, kinesin light ch 99.1 2.5E-10 8.5E-15 117.3 13.0 240 524-791 26-310 (311)
82 3qky_A Outer membrane assembly 99.1 1.9E-09 6.3E-14 107.4 17.8 190 655-869 14-248 (261)
83 4ga2_A E3 SUMO-protein ligase 99.1 1.5E-10 5.2E-15 103.5 6.7 140 664-808 5-149 (150)
84 4gyw_A UDP-N-acetylglucosamine 99.0 1.2E-09 3.9E-14 123.6 14.3 163 624-791 8-177 (723)
85 1qqe_A Vesicular transport pro 99.0 3.4E-09 1.2E-13 107.2 16.0 185 634-818 46-265 (292)
86 2yhc_A BAMD, UPF0169 lipoprote 99.0 1.1E-08 3.9E-13 98.8 18.0 61 764-824 152-215 (225)
87 3q15_A PSP28, response regulat 99.0 6.4E-09 2.2E-13 110.0 16.8 189 630-818 106-328 (378)
88 3edt_B KLC 2, kinesin light ch 99.0 2.2E-09 7.5E-14 108.3 12.6 219 603-821 13-280 (283)
89 1qqe_A Vesicular transport pro 99.0 6.2E-09 2.1E-13 105.3 14.4 212 540-796 32-277 (292)
90 4ga2_A E3 SUMO-protein ligase 99.0 1.1E-09 3.6E-14 98.0 7.7 121 697-820 3-127 (150)
91 3qky_A Outer membrane assembly 98.9 8.1E-09 2.8E-13 102.7 14.3 190 624-813 14-252 (261)
92 2pzi_A Probable serine/threoni 98.9 2.5E-09 8.6E-14 121.9 10.5 188 602-795 402-609 (681)
93 1hz4_A MALT regulatory protein 98.9 4.1E-07 1.4E-11 95.9 26.4 195 496-719 96-321 (373)
94 3qou_A Protein YBBN; thioredox 98.9 1.6E-08 5.5E-13 101.8 14.6 168 646-818 107-280 (287)
95 3mv2_B Coatomer subunit epsilo 98.9 1.4E-07 4.9E-12 92.7 20.7 164 654-822 98-282 (310)
96 3rjv_A Putative SEL1 repeat pr 98.9 5.3E-08 1.8E-12 92.9 17.3 161 654-823 16-198 (212)
97 2fo7_A Synthetic consensus TPR 98.9 1.6E-08 5.6E-13 88.4 12.8 128 658-820 3-130 (136)
98 2fo7_A Synthetic consensus TPR 98.9 4.6E-08 1.6E-12 85.5 15.5 124 627-753 3-129 (136)
99 2r5s_A Uncharacterized protein 98.8 1.5E-08 5E-13 93.7 11.0 155 660-819 10-170 (176)
100 3gyz_A Chaperone protein IPGC; 98.8 1.2E-08 4.3E-13 90.3 9.9 100 722-821 30-132 (151)
101 2pzi_A Probable serine/threoni 98.8 5.5E-08 1.9E-12 110.8 17.3 167 636-807 402-582 (681)
102 3dra_A Protein farnesyltransfe 98.8 2.5E-07 8.5E-12 92.3 19.5 209 609-821 51-286 (306)
103 4gco_A Protein STI-1; structur 98.8 2.7E-08 9.2E-13 85.5 10.7 91 729-819 15-107 (126)
104 3urz_A Uncharacterized protein 98.8 3.7E-08 1.3E-12 93.8 12.8 154 633-792 12-190 (208)
105 4gco_A Protein STI-1; structur 98.8 4.1E-08 1.4E-12 84.4 11.1 114 687-803 8-125 (126)
106 2ifu_A Gamma-SNAP; membrane fu 98.8 4.1E-07 1.4E-11 92.6 20.6 154 658-814 78-253 (307)
107 3edt_B KLC 2, kinesin light ch 98.8 1E-07 3.4E-12 95.9 16.0 165 625-789 85-282 (283)
108 2vgx_A Chaperone SYCD; alterna 98.8 1.4E-08 4.6E-13 90.4 8.3 99 723-821 16-117 (148)
109 2vsy_A XCC0866; transferase, g 98.8 6.9E-08 2.3E-12 108.2 15.8 158 638-800 2-169 (568)
110 2vsy_A XCC0866; transferase, g 98.8 4E-08 1.4E-12 110.1 13.9 149 669-822 2-157 (568)
111 3mv2_B Coatomer subunit epsilo 98.7 3E-07 1E-11 90.5 17.1 164 627-797 102-291 (310)
112 2r5s_A Uncharacterized protein 98.7 9E-08 3.1E-12 88.3 12.3 156 627-787 8-172 (176)
113 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1.5E-07 5.2E-12 90.0 14.2 128 657-791 7-153 (213)
114 3qou_A Protein YBBN; thioredox 98.7 1.1E-07 3.7E-12 95.7 13.2 132 688-822 114-248 (287)
115 2yhc_A BAMD, UPF0169 lipoprote 98.7 2.4E-07 8.2E-12 89.4 14.2 162 629-795 8-220 (225)
116 2ifu_A Gamma-SNAP; membrane fu 98.7 2.2E-07 7.6E-12 94.6 14.6 171 638-820 29-222 (307)
117 2xcb_A PCRH, regulatory protei 98.7 1.4E-07 4.7E-12 83.4 11.1 99 723-821 13-114 (142)
118 2uy1_A Cleavage stimulation fa 98.6 1E-05 3.5E-10 87.6 27.4 201 473-683 197-411 (493)
119 3dra_A Protein farnesyltransfe 98.6 2.9E-06 9.8E-11 84.6 21.1 223 573-801 50-301 (306)
120 3urz_A Uncharacterized protein 98.6 3E-07 1E-11 87.4 12.9 158 658-821 6-185 (208)
121 1p5q_A FKBP52, FK506-binding p 98.6 1.4E-07 4.9E-12 97.2 11.4 92 728-819 197-291 (336)
122 1hh8_A P67PHOX, NCF-2, neutrop 98.6 8E-07 2.7E-11 84.9 15.7 131 628-759 9-154 (213)
123 3u3w_A Transcriptional activat 98.6 1.7E-06 5.7E-11 87.5 18.7 160 661-820 80-264 (293)
124 1a17_A Serine/threonine protei 98.6 3.2E-07 1.1E-11 83.5 12.2 124 694-820 16-144 (166)
125 2lni_A Stress-induced-phosphop 98.6 2.9E-07 9.8E-12 80.1 11.3 114 692-808 17-133 (133)
126 2vyi_A SGTA protein; chaperone 98.6 4E-07 1.4E-11 78.9 11.8 117 692-810 13-131 (131)
127 3upv_A Heat shock protein STI1 98.6 2.6E-07 8.9E-12 79.6 10.0 118 728-865 5-124 (126)
128 1na0_A Designed protein CTPR3; 98.6 5.6E-07 1.9E-11 77.1 12.1 114 692-807 10-125 (125)
129 2e2e_A Formate-dependent nitri 98.5 3.1E-07 1.1E-11 84.7 10.8 116 703-821 22-143 (177)
130 2c2l_A CHIP, carboxy terminus 98.5 7.9E-08 2.7E-12 96.3 7.0 185 626-821 5-198 (281)
131 4f3v_A ESX-1 secretion system 98.5 1.1E-07 3.9E-12 92.2 7.5 136 660-800 106-248 (282)
132 2qfc_A PLCR protein; TPR, HTH, 98.5 1.6E-06 5.6E-11 87.5 16.4 162 658-819 77-263 (293)
133 1hxi_A PEX5, peroxisome target 98.5 2E-07 7E-12 79.3 7.5 93 729-821 19-113 (121)
134 2vgx_A Chaperone SYCD; alterna 98.5 1.9E-07 6.5E-12 82.9 7.5 116 679-799 10-129 (148)
135 4f3v_A ESX-1 secretion system 98.5 4.1E-07 1.4E-11 88.2 10.0 181 637-822 18-237 (282)
136 2uy1_A Cleavage stimulation fa 98.5 6E-05 2E-09 81.6 27.8 125 657-787 287-412 (493)
137 3rjv_A Putative SEL1 repeat pr 98.5 2.3E-06 8E-11 81.4 14.6 160 624-790 17-199 (212)
138 2fbn_A 70 kDa peptidylprolyl i 98.5 8.6E-08 2.9E-12 90.5 4.4 169 632-821 11-185 (198)
139 2kck_A TPR repeat; tetratricop 98.4 8.9E-07 3.1E-11 74.1 9.7 96 727-822 6-106 (112)
140 3gyz_A Chaperone protein IPGC; 98.4 7E-07 2.4E-11 79.0 9.1 98 693-793 38-138 (151)
141 2e2e_A Formate-dependent nitri 98.4 1.2E-06 4E-11 80.8 11.0 129 667-799 21-155 (177)
142 3q7a_A Farnesyltransferase alp 98.4 8.2E-06 2.8E-10 82.0 17.5 209 609-821 72-330 (349)
143 3q49_B STIP1 homology and U bo 98.4 1.4E-06 4.7E-11 76.2 10.3 96 726-821 8-105 (137)
144 3sz7_A HSC70 cochaperone (SGT) 98.4 8.6E-07 2.9E-11 80.5 9.1 109 690-801 10-121 (164)
145 3sz7_A HSC70 cochaperone (SGT) 98.4 1.9E-06 6.5E-11 78.2 11.3 95 655-753 10-105 (164)
146 2xcb_A PCRH, regulatory protei 98.4 1.3E-06 4.4E-11 77.0 9.8 106 693-801 20-128 (142)
147 4gcn_A Protein STI-1; structur 98.4 1.1E-06 3.7E-11 75.6 9.0 92 729-820 10-110 (127)
148 2qfc_A PLCR protein; TPR, HTH, 98.4 2.7E-06 9.4E-11 85.8 13.2 162 627-788 77-266 (293)
149 3upv_A Heat shock protein STI1 98.4 1.8E-06 6.3E-11 74.1 10.0 108 693-803 6-122 (126)
150 2dba_A Smooth muscle cell asso 98.4 3.1E-06 1.1E-10 75.1 11.8 110 693-805 30-145 (148)
151 3gw4_A Uncharacterized protein 98.3 5.7E-06 1.9E-10 78.1 14.3 117 637-753 4-133 (203)
152 1wao_1 Serine/threonine protei 98.3 6.6E-07 2.3E-11 96.9 8.2 191 663-860 13-233 (477)
153 1elw_A TPR1-domain of HOP; HOP 98.3 3.6E-06 1.2E-10 71.0 11.4 106 694-802 7-115 (118)
154 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 2.8E-06 9.5E-11 91.6 13.0 143 656-820 268-413 (457)
155 1elw_A TPR1-domain of HOP; HOP 98.3 2.3E-06 7.8E-11 72.3 9.9 95 727-821 4-100 (118)
156 3rkv_A Putative peptidylprolyl 98.3 2.1E-06 7.3E-11 77.6 9.8 62 760-821 64-125 (162)
157 2hr2_A Hypothetical protein; a 98.3 1.8E-06 6.3E-11 75.1 8.1 100 697-799 17-142 (159)
158 2lni_A Stress-induced-phosphop 98.3 2.7E-06 9.2E-11 73.8 9.2 95 727-821 16-112 (133)
159 3u3w_A Transcriptional activat 98.3 1.5E-05 5E-10 80.4 15.7 158 631-788 81-266 (293)
160 3dss_A Geranylgeranyl transfer 98.3 6.6E-05 2.3E-09 75.2 20.0 191 607-802 90-318 (331)
161 1na0_A Designed protein CTPR3; 98.2 4.4E-06 1.5E-10 71.3 9.9 95 727-821 9-105 (125)
162 3q49_B STIP1 homology and U bo 98.2 4.3E-06 1.5E-10 73.0 9.8 99 690-791 8-109 (137)
163 3gw4_A Uncharacterized protein 98.2 1.7E-05 5.9E-10 74.7 14.5 129 625-753 26-173 (203)
164 1a17_A Serine/threonine protei 98.2 1.7E-05 5.7E-10 71.9 13.8 129 656-788 13-146 (166)
165 3q7a_A Farnesyltransferase alp 98.2 0.00016 5.5E-09 72.7 21.6 227 568-800 66-344 (349)
166 1wao_1 Serine/threonine protei 98.2 2.1E-06 7.1E-11 92.9 8.6 118 697-817 12-134 (477)
167 2dba_A Smooth muscle cell asso 98.2 5.9E-06 2E-10 73.2 10.2 96 726-821 27-127 (148)
168 3rkv_A Putative peptidylprolyl 98.2 1.4E-06 4.8E-11 78.9 6.1 78 728-805 64-144 (162)
169 3dss_A Geranylgeranyl transfer 98.2 4.8E-05 1.7E-09 76.1 17.6 177 641-821 90-303 (331)
170 2hr2_A Hypothetical protein; a 98.2 2.5E-06 8.6E-11 74.3 7.2 94 728-821 12-130 (159)
171 2if4_A ATFKBP42; FKBP-like, al 98.2 3.1E-06 1.1E-10 87.1 8.4 146 656-821 179-327 (338)
172 1hxi_A PEX5, peroxisome target 98.2 6.8E-06 2.3E-10 69.7 9.2 97 694-793 20-119 (121)
173 2xev_A YBGF; tetratricopeptide 98.2 3.8E-06 1.3E-10 72.4 7.8 88 733-820 8-103 (129)
174 1p5q_A FKBP52, FK506-binding p 98.1 1.4E-05 4.8E-10 82.2 12.7 129 655-788 146-294 (336)
175 2vyi_A SGTA protein; chaperone 98.1 2.8E-05 9.4E-10 66.9 12.8 117 655-775 11-130 (131)
176 1dce_A Protein (RAB geranylger 98.1 3.6E-05 1.2E-09 84.7 16.5 168 640-811 44-244 (567)
177 2xev_A YBGF; tetratricopeptide 98.1 2E-05 6.8E-10 67.8 11.6 103 697-802 8-119 (129)
178 2kck_A TPR repeat; tetratricop 98.1 1.5E-05 5.2E-10 66.3 10.0 100 692-793 7-111 (112)
179 3k9i_A BH0479 protein; putativ 98.1 1.8E-06 6.1E-11 73.0 4.1 79 741-819 4-87 (117)
180 2fbn_A 70 kDa peptidylprolyl i 98.1 4.6E-06 1.6E-10 78.4 7.2 145 599-747 12-176 (198)
181 4gcn_A Protein STI-1; structur 98.1 2E-05 6.7E-10 67.6 10.4 60 658-719 10-70 (127)
182 1ihg_A Cyclophilin 40; ppiase 98.1 5.3E-06 1.8E-10 86.3 8.1 136 657-814 224-362 (370)
183 2c2l_A CHIP, carboxy terminus 98.1 1.4E-05 4.8E-10 79.8 10.5 112 690-804 3-117 (281)
184 1elr_A TPR2A-domain of HOP; HO 98.1 9.1E-06 3.1E-10 70.0 8.0 94 728-821 5-107 (131)
185 3k9i_A BH0479 protein; putativ 98.0 3.7E-06 1.3E-10 71.0 5.0 92 704-798 3-100 (117)
186 1elr_A TPR2A-domain of HOP; HO 98.0 1.1E-05 3.9E-10 69.4 8.2 115 657-804 5-123 (131)
187 3ro3_A PINS homolog, G-protein 98.0 1.1E-05 3.9E-10 72.6 8.1 136 657-820 10-156 (164)
188 2if4_A ATFKBP42; FKBP-like, al 98.0 1.1E-05 3.9E-10 82.9 8.8 151 624-794 178-334 (338)
189 4b4t_Q 26S proteasome regulato 98.0 2.7E-05 9.2E-10 83.8 12.2 186 634-819 13-242 (434)
190 2l6j_A TPR repeat-containing p 98.0 9.4E-06 3.2E-10 67.6 6.7 92 726-817 3-102 (111)
191 3n71_A Histone lysine methyltr 98.0 3E-05 1E-09 83.0 11.2 124 700-823 318-465 (490)
192 3ma5_A Tetratricopeptide repea 97.9 3.5E-05 1.2E-09 62.6 8.1 64 758-821 6-69 (100)
193 3ro3_A PINS homolog, G-protein 97.9 4.5E-05 1.5E-09 68.5 9.8 95 625-719 9-117 (164)
194 1na3_A Designed protein CTPR2; 97.9 3.3E-05 1.1E-09 61.4 7.5 81 727-807 9-91 (91)
195 3bee_A Putative YFRE protein; 97.9 5.2E-05 1.8E-09 60.0 8.2 68 756-823 3-73 (93)
196 1ihg_A Cyclophilin 40; ppiase 97.8 5.1E-05 1.7E-09 78.9 10.3 112 691-821 223-335 (370)
197 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 4.6E-05 1.6E-09 82.1 10.0 64 759-822 317-380 (457)
198 4b4t_Q 26S proteasome regulato 97.8 0.00043 1.5E-08 74.3 16.7 121 633-753 103-242 (434)
199 1zu2_A Mitochondrial import re 97.8 1.3E-05 4.4E-10 69.7 3.3 48 775-822 62-120 (158)
200 2kat_A Uncharacterized protein 97.7 4.6E-05 1.6E-09 63.9 6.1 76 746-821 4-81 (115)
201 1klx_A Cysteine rich protein B 97.7 0.00031 1E-08 60.9 10.7 110 706-823 10-127 (138)
202 1zu2_A Mitochondrial import re 97.6 2.5E-05 8.4E-10 67.9 3.5 71 744-821 63-146 (158)
203 1dce_A Protein (RAB geranylger 97.6 0.00065 2.2E-08 74.7 14.3 149 667-820 39-219 (567)
204 3n71_A Histone lysine methyltr 97.6 0.00014 4.9E-09 77.8 8.7 115 736-868 318-450 (490)
205 2l6j_A TPR repeat-containing p 97.5 0.00023 7.8E-09 58.9 7.0 65 758-822 3-67 (111)
206 3qwp_A SET and MYND domain-con 97.4 0.00031 1.1E-08 74.1 8.1 114 737-868 297-428 (429)
207 1klx_A Cysteine rich protein B 97.3 0.0028 9.5E-08 54.8 12.1 112 670-790 9-128 (138)
208 1na3_A Designed protein CTPR2; 97.3 0.00054 1.8E-08 54.1 6.6 63 759-821 9-71 (91)
209 2kat_A Uncharacterized protein 97.2 0.0006 2.1E-08 56.9 7.0 81 710-793 4-87 (115)
210 3qww_A SET and MYND domain-con 97.2 0.0004 1.4E-08 73.0 6.8 83 760-860 341-431 (433)
211 3ly7_A Transcriptional activat 97.1 0.006 2.1E-07 61.2 13.7 60 758-818 276-335 (372)
212 3lvg_A Clathrin heavy chain 1; 97.1 0.001 3.4E-08 67.8 8.0 118 108-238 53-170 (624)
213 3lvg_A Clathrin heavy chain 1; 97.1 0.03 1E-06 57.3 18.2 238 76-337 52-324 (624)
214 3ly7_A Transcriptional activat 97.1 0.0036 1.2E-07 62.8 11.5 156 642-801 181-351 (372)
215 2kc7_A BFR218_protein; tetratr 97.0 0.0021 7.2E-08 51.6 7.8 64 733-796 6-72 (99)
216 3u64_A Protein TP_0956; tetrat 97.0 0.016 5.4E-07 55.6 14.4 87 743-829 179-276 (301)
217 1pc2_A Mitochondria fission pr 96.9 0.0025 8.7E-08 54.6 7.8 90 705-796 12-108 (152)
218 3qww_A SET and MYND domain-con 96.9 0.0033 1.1E-07 66.1 10.3 93 703-795 310-423 (433)
219 3ma5_A Tetratricopeptide repea 96.9 0.0038 1.3E-07 50.2 8.3 64 655-719 6-69 (100)
220 2kc7_A BFR218_protein; tetratr 96.8 0.0017 5.8E-08 52.2 5.8 58 765-822 6-64 (99)
221 3qwp_A SET and MYND domain-con 96.7 0.0063 2.1E-07 64.1 10.3 98 701-798 297-415 (429)
222 1pc2_A Mitochondria fission pr 96.4 0.012 4.1E-07 50.4 8.3 86 671-759 13-104 (152)
223 2v5f_A Prolyl 4-hydroxylase su 96.2 0.014 4.8E-07 47.2 7.8 69 732-800 10-87 (104)
224 1wy6_A Hypothetical protein ST 95.9 0.45 1.6E-05 39.0 14.5 141 666-825 17-157 (172)
225 3bee_A Putative YFRE protein; 95.9 0.043 1.5E-06 43.0 8.9 70 724-793 3-77 (93)
226 1qsa_A Protein (soluble lytic 95.7 2.9 9.8E-05 45.8 25.1 113 671-787 229-347 (618)
227 3mkq_A Coatomer beta'-subunit; 95.7 0.15 5.3E-06 59.4 16.5 102 634-753 661-762 (814)
228 3mkq_A Coatomer beta'-subunit; 95.2 0.17 5.9E-06 59.0 14.6 98 636-754 610-708 (814)
229 1nzn_A CGI-135 protein, fissio 95.2 0.26 9E-06 40.4 11.1 91 706-798 16-113 (126)
230 3u64_A Protein TP_0956; tetrat 95.0 0.055 1.9E-06 51.9 7.5 111 638-753 134-266 (301)
231 1y8m_A FIS1; mitochondria, unk 94.8 0.41 1.4E-05 40.0 11.4 72 724-795 36-113 (144)
232 4gns_B Protein CSD3, chitin bi 94.6 0.08 2.7E-06 59.0 8.9 54 766-819 344-397 (754)
233 1nzn_A CGI-135 protein, fissio 94.6 0.11 3.7E-06 42.7 7.4 90 756-871 32-126 (126)
234 2v5f_A Prolyl 4-hydroxylase su 94.1 0.11 3.8E-06 41.7 6.6 64 758-821 4-74 (104)
235 3mkq_B Coatomer subunit alpha; 93.9 0.99 3.4E-05 39.7 12.6 105 397-521 13-117 (177)
236 4ady_A RPN2, 26S proteasome re 93.9 11 0.00039 43.0 31.7 297 391-693 341-663 (963)
237 3mkq_B Coatomer subunit alpha; 93.5 3.6 0.00012 36.1 15.8 128 634-785 14-141 (177)
238 3o48_A Mitochondria fission 1 93.0 0.35 1.2E-05 39.8 7.6 73 723-795 36-114 (134)
239 4ady_A RPN2, 26S proteasome re 92.3 19 0.00064 41.2 26.5 156 602-761 501-663 (963)
240 4h7y_A Dual specificity protei 92.0 0.28 9.5E-06 41.3 5.9 105 688-794 10-129 (161)
241 3ffl_A Anaphase-promoting comp 92.0 1.1 3.7E-05 38.7 9.7 59 662-720 26-92 (167)
242 4h7y_A Dual specificity protei 91.9 0.57 2E-05 39.5 7.6 97 654-753 11-120 (161)
243 2wpv_A GET4, UPF0363 protein Y 91.9 10 0.00035 37.1 20.3 165 530-720 38-217 (312)
244 1zbp_A Hypothetical protein VP 90.6 1.7 5.6E-05 41.1 10.3 121 665-795 6-136 (273)
245 1y8m_A FIS1; mitochondria, unk 90.3 2.1 7.2E-05 35.8 9.5 69 688-759 36-110 (144)
246 4b4t_P 26S proteasome regulato 89.8 21 0.00073 37.3 21.3 96 658-753 139-244 (445)
247 3o48_A Mitochondria fission 1 89.3 1.1 3.9E-05 36.8 7.1 76 687-765 36-117 (134)
248 3lpz_A GET4 (YOR164C homolog); 88.3 21 0.00071 35.2 25.6 164 530-719 40-215 (336)
249 2wpv_A GET4, UPF0363 protein Y 86.3 26 0.00089 34.2 19.5 169 391-583 35-215 (312)
250 3ffl_A Anaphase-promoting comp 86.2 1.2 4.3E-05 38.3 5.8 122 686-819 13-148 (167)
251 1wy6_A Hypothetical protein ST 86.0 13 0.00046 30.6 13.5 83 402-486 74-156 (172)
252 4gns_B Protein CSD3, chitin bi 84.6 5.3 0.00018 44.6 11.5 52 700-754 346-398 (754)
253 3txn_A 26S proteasome regulato 82.3 34 0.0012 34.8 15.5 160 628-788 22-210 (394)
254 2ff4_A Probable regulatory pro 82.2 8.4 0.00029 39.6 11.3 74 659-733 174-251 (388)
255 1v54_E Cytochrome C oxidase po 80.5 8.7 0.0003 29.7 7.6 63 671-735 25-87 (109)
256 1qsa_A Protein (soluble lytic 79.5 77 0.0026 34.6 36.6 379 391-814 74-471 (618)
257 2ff4_A Probable regulatory pro 79.5 3.1 0.00011 42.8 7.0 58 763-820 175-232 (388)
258 1v54_E Cytochrome C oxidase po 79.3 7.2 0.00025 30.1 6.8 48 438-485 28-75 (109)
259 3lpz_A GET4 (YOR164C homolog); 78.8 53 0.0018 32.4 20.2 170 391-584 37-215 (336)
260 4fhn_B Nucleoporin NUP120; pro 77.9 16 0.00055 43.8 13.5 144 595-745 816-989 (1139)
261 2uwj_G Type III export protein 77.5 22 0.00076 27.3 9.7 90 56-152 19-108 (115)
262 2p58_C Putative type III secre 76.7 24 0.00081 27.2 9.2 90 56-152 20-109 (116)
263 2uwj_G Type III export protein 76.6 24 0.00081 27.2 9.0 60 633-695 47-106 (115)
264 4b4t_P 26S proteasome regulato 76.0 79 0.0027 32.9 19.2 25 560-584 141-165 (445)
265 2p58_C Putative type III secre 75.9 25 0.00085 27.1 9.2 58 634-694 49-106 (116)
266 3ltj_A Alpharep-4; protein eng 74.0 49 0.0017 29.6 13.8 59 285-344 120-178 (201)
267 2y69_E Cytochrome C oxidase su 71.9 17 0.00059 29.8 7.6 62 672-735 69-130 (152)
268 4fhn_B Nucleoporin NUP120; pro 70.4 51 0.0018 39.5 15.2 60 762-821 902-966 (1139)
269 2y69_E Cytochrome C oxidase su 67.3 18 0.00062 29.7 6.8 60 438-501 71-130 (152)
270 3ltm_A Alpha-REP4; protein eng 66.5 75 0.0025 28.7 14.2 10 186-195 100-109 (211)
271 3jxi_A Vanilloid receptor-rela 65.6 62 0.0021 30.4 12.3 88 154-246 10-120 (260)
272 1wdy_A 2-5A-dependent ribonucl 65.2 95 0.0032 29.4 18.8 60 186-246 150-213 (285)
273 1zbp_A Hypothetical protein VP 65.0 9 0.00031 36.1 5.5 58 735-792 5-64 (273)
274 4b4t_R RPN7, 26S proteasome re 61.9 33 0.0011 35.7 10.0 99 624-722 130-239 (429)
275 3eiq_C Programmed cell death p 60.6 29 0.001 34.6 8.7 65 289-354 220-289 (358)
276 4b4t_R RPN7, 26S proteasome re 60.2 45 0.0016 34.6 10.7 93 593-685 133-237 (429)
277 3mv2_A Coatomer subunit alpha; 60.0 32 0.0011 33.4 8.5 42 750-791 196-239 (325)
278 1n11_A Ankyrin; clathrin, BAND 58.8 1.7E+02 0.0057 30.1 15.9 39 169-207 96-136 (437)
279 1oyz_A Hypothetical protein YI 56.1 1.4E+02 0.0047 28.4 20.0 58 285-345 205-262 (280)
280 3esl_A Checkpoint serine/threo 54.2 53 0.0018 29.4 8.3 61 367-427 93-153 (202)
281 4b4t_S RPN3, 26S proteasome re 54.2 58 0.002 34.3 9.9 66 728-793 232-304 (523)
282 3eu9_A Huntingtin-interacting 52.4 96 0.0033 28.3 10.9 214 3-238 4-233 (240)
283 4a1g_A Mitotic checkpoint seri 51.4 76 0.0026 26.9 8.4 49 372-420 84-132 (152)
284 1k1a_A B-cell lymphoma 3-encod 51.1 98 0.0033 28.4 10.7 21 13-33 13-33 (241)
285 3esl_A Checkpoint serine/threo 50.1 67 0.0023 28.8 8.3 52 538-589 92-148 (202)
286 3twe_A Alpha4H; unknown functi 50.1 19 0.00067 18.7 2.7 17 852-868 3-19 (27)
287 3txn_A 26S proteasome regulato 47.3 2.4E+02 0.0082 28.6 22.0 282 497-823 23-344 (394)
288 1k1a_A B-cell lymphoma 3-encod 46.9 1.4E+02 0.0047 27.3 11.1 48 158-205 18-67 (241)
289 1n11_A Ankyrin; clathrin, BAND 46.2 2.6E+02 0.0089 28.6 19.2 22 83-104 82-103 (437)
290 3hra_A Ankyrin repeat family p 46.0 1.4E+02 0.0049 26.2 10.7 181 13-203 9-197 (201)
291 2etb_A Transient receptor pote 45.4 1.3E+02 0.0043 28.1 10.6 53 153-206 6-68 (256)
292 4a1g_A Mitotic checkpoint seri 44.2 1.2E+02 0.0042 25.7 8.6 46 544-589 84-134 (152)
293 3mkr_B Coatomer subunit alpha; 43.8 63 0.0022 31.4 7.6 42 750-791 187-230 (320)
294 3aji_A 26S proteasome non-ATPa 42.6 1.6E+02 0.0054 26.7 10.6 20 12-31 9-28 (231)
295 3b7b_A Euchromatic histone-lys 41.6 1.9E+02 0.0065 26.3 11.1 209 11-240 13-235 (237)
296 2d2s_A Exocyst complex compone 39.4 1.4E+02 0.0048 27.6 9.2 121 11-136 23-160 (235)
297 3ltj_A Alpharep-4; protein eng 37.3 2.2E+02 0.0074 25.1 16.7 144 85-239 35-178 (201)
298 2zu6_B Programmed cell death p 37.1 2.7E+02 0.0093 27.0 11.2 25 497-521 7-31 (307)
299 2rfa_A Transient receptor pote 36.2 2.3E+02 0.0079 25.6 10.7 22 83-104 77-98 (232)
300 2pnn_A Transient receptor pote 36.0 2.8E+02 0.0094 26.0 11.6 50 157-206 21-79 (273)
301 3bqo_A Telomeric repeat-bindin 35.9 1.8E+02 0.0062 25.8 8.4 66 743-808 94-166 (211)
302 2zu6_B Programmed cell death p 34.4 93 0.0032 30.3 7.4 28 392-419 6-33 (307)
303 4b4t_S RPN3, 26S proteasome re 33.9 2.8E+02 0.0096 29.2 11.2 62 285-346 230-299 (523)
304 2wvi_A Mitotic checkpoint seri 33.5 1.6E+02 0.0056 25.3 7.9 48 543-590 78-130 (164)
305 2wvi_A Mitotic checkpoint seri 33.3 1.7E+02 0.0056 25.3 7.9 44 372-415 79-122 (164)
306 2pk8_A Uncharacterized protein 31.9 33 0.0011 25.6 2.7 23 853-875 16-38 (103)
307 3ljn_A Hypothetical protein; a 31.6 3.7E+02 0.013 26.5 12.1 116 83-206 55-195 (364)
308 3ltm_A Alpha-REP4; protein eng 30.6 2.9E+02 0.0098 24.5 16.1 153 77-240 32-184 (211)
309 2nsz_A Programmed cell death p 30.1 2.2E+02 0.0074 23.3 8.0 69 497-565 11-83 (129)
310 1oai_A Nuclear RNA export fact 29.1 43 0.0015 23.0 2.9 25 330-354 33-57 (59)
311 1ya0_A SMG-7 transcript varian 28.8 72 0.0025 33.7 6.0 40 773-812 166-205 (497)
312 2d2s_A Exocyst complex compone 28.4 1.7E+02 0.0058 27.1 7.8 88 662-753 24-117 (235)
313 3ygs_P Procaspase 9; apoptosis 28.0 1.4E+02 0.0047 23.0 6.0 38 403-440 51-88 (97)
314 2nsz_A Programmed cell death p 27.9 1.3E+02 0.0046 24.6 6.3 66 8-76 9-76 (129)
315 3kea_A K1L; tropism, ANK repea 27.8 3.9E+02 0.013 25.2 12.7 16 578-593 210-225 (285)
316 4aez_C MAD3, mitotic spindle c 27.0 1.6E+02 0.0054 26.9 7.0 51 370-420 131-181 (223)
317 2dl1_A Spartin; SPG20, MIT, st 27.0 2E+02 0.007 22.9 6.6 15 807-821 68-82 (116)
318 1bd8_A P19INK4D CDK4/6 inhibit 26.9 2.2E+02 0.0076 23.5 8.2 14 16-29 9-22 (156)
319 2r9g_A AAA ATPase, central reg 26.8 1.3E+02 0.0045 26.7 6.2 91 531-650 17-113 (204)
320 2rfa_A Transient receptor pote 26.7 3.5E+02 0.012 24.3 11.9 60 185-245 122-184 (232)
321 1wdy_A 2-5A-dependent ribonucl 26.4 3.9E+02 0.013 24.8 15.8 58 293-352 152-213 (285)
322 3kea_A K1L; tropism, ANK repea 26.1 4.2E+02 0.014 25.0 15.1 51 185-235 130-181 (285)
323 3ctd_A Putative ATPase, AAA fa 25.9 1.6E+02 0.0053 26.5 6.5 57 567-623 46-107 (213)
324 3jxi_A Vanilloid receptor-rela 25.8 2.1E+02 0.0071 26.5 8.5 94 12-105 8-117 (260)
325 3hra_A Ankyrin repeat family p 25.7 3.3E+02 0.011 23.7 11.0 77 294-376 10-92 (201)
326 2ion_A PDCD4, programmed cell 24.7 1.6E+02 0.0054 25.0 6.3 66 8-76 11-78 (152)
327 3ljn_A Hypothetical protein; a 24.0 5.2E+02 0.018 25.3 12.8 54 293-347 57-111 (364)
328 3l6a_A Eukaryotic translation 24.0 1.3E+02 0.0045 30.1 6.6 60 81-140 15-78 (364)
329 1oyz_A Hypothetical protein YI 23.6 4.6E+02 0.016 24.5 22.1 47 285-331 36-82 (280)
330 1bpo_A Protein (clathrin); cla 23.5 5.8E+02 0.02 26.3 10.9 16 397-412 369-384 (494)
331 3ygs_P Procaspase 9; apoptosis 23.4 1.6E+02 0.0053 22.7 5.5 35 539-573 51-85 (97)
332 2fu4_A Ferric uptake regulatio 23.0 2E+02 0.007 20.9 6.1 61 135-197 7-68 (83)
333 1bd8_A P19INK4D CDK4/6 inhibit 22.7 3.1E+02 0.011 22.5 8.3 15 297-311 109-123 (156)
334 2ion_A PDCD4, programmed cell 22.6 2.1E+02 0.007 24.3 6.6 69 497-565 13-85 (152)
335 4g8k_A 2-5A-dependent ribonucl 22.3 5.4E+02 0.018 24.9 18.8 80 293-385 243-326 (337)
336 1oy3_D Transcription factor in 22.3 4.7E+02 0.016 24.2 11.2 215 12-246 12-252 (282)
337 4aez_C MAD3, mitotic spindle c 22.0 4.3E+02 0.015 24.0 8.9 32 659-690 153-184 (223)
338 3bge_A Predicted ATPase; struc 22.0 1.3E+02 0.0045 26.7 5.2 39 567-605 18-56 (201)
339 3syn_E ATP-binding protein YLX 21.1 49 0.0017 16.5 1.3 18 805-822 2-19 (23)
340 3eiq_C Programmed cell death p 20.5 6.3E+02 0.022 25.0 17.3 71 497-567 221-295 (358)
341 2pnn_A Transient receptor pote 20.5 3E+02 0.01 25.7 8.5 98 5-104 10-124 (273)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-38 Score=362.63 Aligned_cols=497 Identities=9% Similarity=-0.070 Sum_probs=287.2
Q ss_pred HHhHhcCChhHHHHHhhhcCCCCccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChhhHH
Q 002834 294 SFYLRFGRTEEAELLFRRMKSRDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGK 373 (875)
Q Consensus 294 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~ 373 (875)
..+.+.|.+..+...+..++.+++..|+.++..+.+.|++++|+.+|++|.. ..|+..++..+..++...|+++.|.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 61 NNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHH
Confidence 3456678888888889988888999999999999999999999999999996 4589999999999999999999999
Q ss_pred HHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcCCC-------------------CcchHHHHHHHHhccC
Q 002834 374 EIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRR-------------------DLISWNSMLDAFSESG 434 (875)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g 434 (875)
.++..+... +.+.. +++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|
T Consensus 138 ~~~~~~~~~--~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 214 (597)
T 2xpi_A 138 CLLTKEDLY--NRSSA-CRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLS 214 (597)
T ss_dssp HHHHHTCGG--GTCHH-HHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcc--ccchh-HHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcC
Confidence 999987654 33444 8999999999999999999999965443 3788999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCChhh-HHHHHHHhhccCchhh--HHHH-HHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHH
Q 002834 435 YNSQFLNLLNCMLMEGIRPDSIT-ILTIIHFCTTVLREGM--VKET-HGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIK 510 (875)
Q Consensus 435 ~~~~a~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~--a~~~-~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 510 (875)
++++|+++|++|.+.+ |+..+ +..+...+...+.... ...+ +..+...+. .....+++.++..|.+.|+++
T Consensus 215 ~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~ 289 (597)
T 2xpi_A 215 NFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDA---AFLRSLYMLKLNKTSHEDELR 289 (597)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGH---HHHHHHHHTTSCTTTTHHHHH
T ss_pred CHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchH---HHHHHHHHHHHHHHcCcchHH
Confidence 9999999999998864 54433 3333322222211111 1111 222222222 333444555566677777777
Q ss_pred HHHHHHHhhccC-CCcccHHHHHHHhhcCCChHHHHHHHHhhhcC---CCccHHHHHHHHHHcCCchHHHHHHHHHHHCC
Q 002834 511 YAFNVFQSLLEK-RNLVTFNPVISGYANCGSADEAFMTFSRIYAR---DLTPWNLMIRVYAENDFPNQALSLFLKLQAQG 586 (875)
Q Consensus 511 ~A~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g 586 (875)
+|.++|+++... ++..+|+.++.+|.+.|++++|..+|+++... +...+..++.+|.+.|++++|..+++++.+..
T Consensus 290 ~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 369 (597)
T 2xpi_A 290 RAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH 369 (597)
T ss_dssp HHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Confidence 777777777663 36667777777776666666666666666432 33336666666666666666666666665431
Q ss_pred CCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHH
Q 002834 587 MKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMI 663 (875)
Q Consensus 587 ~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li 663 (875)
+.+..++..+...+.+.|+++.|.++++.+.+..+.+...+..++..|.+.|++++|.++|+++.+ .+..+|+.++
T Consensus 370 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 448 (597)
T 2xpi_A 370 -PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLG 448 (597)
T ss_dssp -TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHH
T ss_pred -cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 223444444555555555555555555555544444444455555555555555555555544321 2344455555
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHh---CCCCC--hhHHHHHHHHhh
Q 002834 664 GGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQ---GIKPT--PEQYASLVDLLA 738 (875)
Q Consensus 664 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~l~~~~~ 738 (875)
.+|.+.|++++|+++|+++.+.. +.+..+|..++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.
T Consensus 449 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~ 527 (597)
T 2xpi_A 449 MQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYR 527 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHH
Confidence 55555555555555555554431 2234444444445555555555555555444321 33444 334455555555
Q ss_pred cCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHH
Q 002834 739 RGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLY 803 (875)
Q Consensus 739 ~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 803 (875)
+.|++++|.++++++. ..| +..+|..+..+|...|+++.|.+.++++++++|+++..+..|+++|
T Consensus 528 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 528 KLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 5555555555554442 122 3444445555555555555555555555555555555555444444
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-36 Score=347.15 Aligned_cols=503 Identities=11% Similarity=-0.037 Sum_probs=339.9
Q ss_pred HHHHccCCchHHHHhhccCCCCCchhHHHHHHHHhcCCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHhhccCCcchh
Q 002834 86 NLYAKCGVIDDCYKLFGQVDNTDPVTWNILLSGFACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSACARLGGIFAG 165 (875)
Q Consensus 86 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 165 (875)
..+.+.|.+..+...|+.++.+++..|+.++..|.+.| ++++|+.+|++|... .|+..++..+..+|.+.|+++.|
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A 136 (597)
T 2xpi_A 61 NNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQ-QYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARA 136 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccccccCccCCCCCccccchHHHHHHHHHHHHHHHHcc-CchHHHHHHHHHHhh---CCCchHHHHHHHHHHHcCcHHHH
Confidence 34567788888999999999899999999999999999 999999999999864 57889999999999999999999
Q ss_pred hhHHHHHHHhCCCCCcchhhHHHHHhHhcCChhHHHHHhccCCCC-------------------CeeeHHHHHHHHHcCC
Q 002834 166 KSLHAYVIKFGLERHTLVGNSLTSMYAKRGLVHDAYSVFDSIEDK-------------------DVVSWNAVISGLSENK 226 (875)
Q Consensus 166 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g 226 (875)
..+++.+... +++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|
T Consensus 137 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 214 (597)
T 2xpi_A 137 KCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLS 214 (597)
T ss_dssp HHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcC
Confidence 9999987543 688899999999999999999999999964433 3779999999999999
Q ss_pred CcchHHHHHHHHHhCCCCCChhhHHhHHHHhccCCccccccchhHH-HHHHHHhcccCCchhHhhhHHHHhHhcCChhHH
Q 002834 227 VLGDAFRLFSWMLTEPIKPNYATILNILPICASLDEDVGYFFGREI-HCYVLRRAELIADVSVCNALVSFYLRFGRTEEA 305 (875)
Q Consensus 227 ~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 305 (875)
++++|.++|++|.+. .|+..+....+..+..............+ +..+...+... ...+|+.++..|.+.|++++|
T Consensus 215 ~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A 291 (597)
T 2xpi_A 215 NFDRAKECYKEALMV--DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAF-LRSLYMLKLNKTSHEDELRRA 291 (597)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHH-HHHHHHTTSCTTTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHH-HHHHHHHHHHHHcCcchHHHH
Confidence 999999999999875 45544433333333222211111111111 22222222222 566788889999999999999
Q ss_pred HHHhhhcCC--CCccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHhcC
Q 002834 306 ELLFRRMKS--RDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIHGYFLRHP 383 (875)
Q Consensus 306 ~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 383 (875)
.++|+.+.+ ++..+|+.++..|.+.|++++|+.+|+++.+.+ +.+..++..++.++...|+.+.|..++..+.+..
T Consensus 292 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 369 (597)
T 2xpi_A 292 EDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID--PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH 369 (597)
T ss_dssp HHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Confidence 999999987 789999999999999999999999999999865 2356667777777777777777777777766442
Q ss_pred CCCchhhHHHHHHHHHhcCCChhHHHHHHHhcC---CCCcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHH
Q 002834 384 YLEEDAAVGNALVSFYAKCSDMEAAYRTFLMIC---RRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILT 460 (875)
Q Consensus 384 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 460 (875)
++...++..++.+|.+.|++++|.++|+++. ..+..+|+.++..|.+.|++++|+++|+++.+.+
T Consensus 370 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------- 437 (597)
T 2xpi_A 370 --PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF---------- 437 (597)
T ss_dssp --TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----------
T ss_pred --cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------
Confidence 2222255555555555555555555555442 2234455555555555555555555555554432
Q ss_pred HHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-C-CcccHHHHHHHhhcC
Q 002834 461 IIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEK-R-NLVTFNPVISGYANC 538 (875)
Q Consensus 461 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~l~~~~~~~ 538 (875)
+.+..++..++.+|.+.|++++|.++|+++... | +..+|
T Consensus 438 -----------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---------- 478 (597)
T 2xpi_A 438 -----------------------------QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLL---------- 478 (597)
T ss_dssp -----------------------------TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHH----------
T ss_pred -----------------------------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH----------
Confidence 223333344444555555555555555544331 1 33344
Q ss_pred CChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCchHHHHHHHHHHHC----CCCCCcchHhcHHHHhhcccchHHHHHHH
Q 002834 539 GSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQAQ----GMKPDAVTIMSLLPVCSQMASVHLLRQCH 614 (875)
Q Consensus 539 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~~p~~~~~~~ll~a~~~~~~~~~a~~~~ 614 (875)
+.++.+|.+.|++++|+++|+++.+. +..|+.
T Consensus 479 ---------------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~----------------------- 514 (597)
T 2xpi_A 479 ---------------------NELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP----------------------- 514 (597)
T ss_dssp ---------------------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGG-----------------------
T ss_pred ---------------------HHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhh-----------------------
Confidence 44444447777777777777777653 333321
Q ss_pred HHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhH
Q 002834 615 GYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVI 694 (875)
Q Consensus 615 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 694 (875)
...+|+.++.+|.+.|++++|++.|+++.+.+ +.+..+|
T Consensus 515 ----------------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~ 553 (597)
T 2xpi_A 515 ----------------------------------------WAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVH 553 (597)
T ss_dssp ----------------------------------------GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHH
T ss_pred ----------------------------------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHH
Confidence 03457888888888889999999998888753 4467788
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhh
Q 002834 695 TAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLA 738 (875)
Q Consensus 695 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 738 (875)
..+..+|.+.|++++|.++|+++.+ +.|+ ...+..+..+|.
T Consensus 554 ~~l~~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 554 TAIALVYLHKKIPGLAITHLHESLA---ISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHh---cCCCChHHHHHHHHHHh
Confidence 8888888999999999999988877 4565 346666666654
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=5.3e-25 Score=236.00 Aligned_cols=369 Identities=12% Similarity=0.075 Sum_probs=271.5
Q ss_pred HHhccCChhHHHHHHHHHHHCCCCCChh-hHHHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcC
Q 002834 429 AFSESGYNSQFLNLLNCMLMEGIRPDSI-TILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCR 507 (875)
Q Consensus 429 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 507 (875)
.+.+.|++++|+..++++.+. .|+.. .+..+...+...++.+.+...++...+.. +.+...+..+...|.+.|
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~----p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN----PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCchHHHHHHHHHHHHCC
Confidence 344455555555555555443 23332 22233333444555555555555555443 455666777777777777
Q ss_pred CHHHHHHHHHhhccC-C-CcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCcc---HHHHHHHHHHcCCchHHHHHHHHH
Q 002834 508 NIKYAFNVFQSLLEK-R-NLVTFNPVISGYANCGSADEAFMTFSRIYARDLTP---WNLMIRVYAENDFPNQALSLFLKL 582 (875)
Q Consensus 508 ~~~~A~~~~~~~~~~-p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~m 582 (875)
++++|...|+++... | +..+|..+..++.+.|++++|...|+++...++.. +..+...+...|++++|...|+++
T Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 777777777776553 4 34467777777777777777777777775544333 666777777778888888888877
Q ss_pred HHCCCCCC-cchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhh
Q 002834 583 QAQGMKPD-AVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVM 658 (875)
Q Consensus 583 ~~~g~~p~-~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~ 658 (875)
.+. .|+ ..++..+...+...|+.+.|...++.+.+..+.....+..+...+...|++++|...|++... .+..+
T Consensus 162 l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 239 (388)
T 1w3b_A 162 IET--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV 239 (388)
T ss_dssp HHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHH
T ss_pred HHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHH
Confidence 764 333 456667777777778888888888888777777777888888888999999999988886553 45678
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhh
Q 002834 659 LTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLA 738 (875)
Q Consensus 659 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 738 (875)
|..+...|...|++++|++.|+++.+.+ +.+..++..+..++.+.|++++|.+.|+++.+. .+++...+..++.++.
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHH
Confidence 8899999999999999999999998852 234567888888999999999999999999873 3445668889999999
Q ss_pred cCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCC
Q 002834 739 RGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADAR 808 (875)
Q Consensus 739 ~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 808 (875)
+.|++++|.+.++++. ..| +..+|..+..++...|+++.|+..++++++++|+++..|..++.+|...|+
T Consensus 317 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999999999998875 445 467888898999999999999999999999999999999999998887764
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=3.1e-24 Score=230.10 Aligned_cols=349 Identities=12% Similarity=0.109 Sum_probs=308.0
Q ss_pred HHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-C-CcccHHHHHHHhhcCC
Q 002834 462 IHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEK-R-NLVTFNPVISGYANCG 539 (875)
Q Consensus 462 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~l~~~~~~~~ 539 (875)
...+.+.|+++.|.+.+..+.+.. +.+...+..+...+...|++++|...++..... | +..+|..+...|.+.|
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~----p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE----PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCC
Confidence 345667899999999999988875 556677788888999999999999999887764 4 6678999999999999
Q ss_pred ChHHHHHHHHhhhcCCCcc---HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcch-HhcHHHHhhcccchHHHHHHHH
Q 002834 540 SADEAFMTFSRIYARDLTP---WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVT-IMSLLPVCSQMASVHLLRQCHG 615 (875)
Q Consensus 540 ~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~a~~~~~~~~~a~~~~~ 615 (875)
++++|...|+++...++.. |..++.+|.+.|++++|+..|+++.+. .|+... +..+...+...|+++.|...+.
T Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 9999999999996655443 899999999999999999999999875 566554 4566677888999999999999
Q ss_pred HHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-Ch
Q 002834 616 YVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNP-DH 691 (875)
Q Consensus 616 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~ 691 (875)
.+.+..+.+...+..+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++..+. .| +.
T Consensus 160 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~ 237 (388)
T 1w3b_A 160 KAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHA 237 (388)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCH
Confidence 99999888899999999999999999999999998764 45678999999999999999999999999884 45 46
Q ss_pred hhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 002834 692 VVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP--VEADCNVWGTLLGA 768 (875)
Q Consensus 692 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~ 768 (875)
.++..+..++...|++++|.+.|+++.+ ..|+ ...|..++.++.+.|++++|.+.++++. .+++..+|..+...
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 7788888899999999999999999987 5565 5589999999999999999999999985 45577899999999
Q ss_pred HHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 769 CRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 769 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
+...|+++.|+..+++++++.|+++..+..++.+|...|++++|.+.++.+.+
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999988764
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.93 E-value=1.8e-26 Score=250.01 Aligned_cols=215 Identities=14% Similarity=0.102 Sum_probs=176.6
Q ss_pred CChhh-HHHHHHHHhhcCCCCCCC-hhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCCchhhhHHHHHHHccCCchHH
Q 002834 20 GLHKE-ALSLFAHELQSSPSVRHN-HQLFSAVLKSCTSLADILLGKALHGYVTKLGHISCQAVSKALLNLYAKCGVIDDC 97 (875)
Q Consensus 20 ~~~~~-a~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 97 (875)
|+... +..+.+++.+.. ..++ ...++.+|.+|++.|++..|.+++++|.+.|+.||..+||+||.+|++.+...++
T Consensus 3 G~~~s~~e~L~~~~~~k~--~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~ 80 (501)
T 4g26_A 3 GHMASPSENLSRKAKKKA--IQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES 80 (501)
T ss_dssp -----------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS
T ss_pred ccccchHHHHHHHHHHhc--ccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh
Confidence 34433 345555565554 3333 3468888999999999999999999999999999999999999999887764332
Q ss_pred HHhhccCCCCCchhHHHHHHHHhcCCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHhhccCCcchhhhHHHHHHHhCC
Q 002834 98 YKLFGQVDNTDPVTWNILLSGFACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSACARLGGIFAGKSLHAYVIKFGL 177 (875)
Q Consensus 98 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 177 (875)
...+ ..++|.++|++|...| +.||..||++||.+|++.|+++.|.+++++|.+.|+
T Consensus 81 ----------------------~~~~-~l~~A~~lf~~M~~~G-~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~ 136 (501)
T 4g26_A 81 ----------------------SPNP-GLSRGFDIFKQMIVDK-VVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGI 136 (501)
T ss_dssp ----------------------SCCH-HHHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC
T ss_pred ----------------------hhcc-hHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Confidence 2344 6789999999999999 999999999999999999999999999999999999
Q ss_pred CCCcchhhHHHHHhHhcCChhHHHHHhccCC----CCCeeeHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCChhhHHhH
Q 002834 178 ERHTLVGNSLTSMYAKRGLVHDAYSVFDSIE----DKDVVSWNAVISGLSENKVLGDAFRLFSWMLTEPIKPNYATILNI 253 (875)
Q Consensus 178 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~l 253 (875)
.||..+|++||.+|++.|++++|.++|++|. .||..||++||.+|++.|++++|.++|++|++.|+.|+..||..+
T Consensus 137 ~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l 216 (501)
T 4g26_A 137 QPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMI 216 (501)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHH
T ss_pred CCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHH
Confidence 9999999999999999999999999999996 489999999999999999999999999999999999999999888
Q ss_pred HHHhccC
Q 002834 254 LPICASL 260 (875)
Q Consensus 254 l~~~~~~ 260 (875)
+..+...
T Consensus 217 ~~~F~s~ 223 (501)
T 4g26_A 217 EEWFKSE 223 (501)
T ss_dssp HHHHHSH
T ss_pred HHHHhcC
Confidence 8876553
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.92 E-value=8e-25 Score=237.18 Aligned_cols=184 Identities=11% Similarity=0.072 Sum_probs=170.2
Q ss_pred chHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCCCChhhHHHHHHHhcccCc---------hHHHHHHHHHHHHhcCCCC
Q 002834 7 KSWITIINGFCRDGLHKEALSLFAHELQSSPSVRHNHQLFSAVLKSCTSLAD---------ILLGKALHGYVTKLGHISC 77 (875)
Q Consensus 7 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 77 (875)
..++.+|.+|++.|++++|+++|++|.+.+ +.||..||+.||.+|++.+. +..|.+++++|.+.|+.||
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~G--v~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd 104 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNG--VQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN 104 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHT--CCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCC
Confidence 468899999999999999999999999986 99999999999999987654 6789999999999999999
Q ss_pred chhhhHHHHHHHccCCchHHHHhhccCC----CCCchhHHHHHHHHhcCCCChhHHHHHHHHhHhcCCCCCCcchHHHHH
Q 002834 78 QAVSKALLNLYAKCGVIDDCYKLFGQVD----NTDPVTWNILLSGFACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVL 153 (875)
Q Consensus 78 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ll 153 (875)
..+||+||.+|++.|++++|.++|++|. .||..+||++|.+|++.| ++++|.++|++|.+.| +.||..||+.||
T Consensus 105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g-~~~~A~~l~~~M~~~G-~~Pd~~ty~~Li 182 (501)
T 4g26_A 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKG-DADKAYEVDAHMVESE-VVPEEPELAALL 182 (501)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTT-CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCC-CHHHHHHHHHHHHhcC-CCCCHHHHHHHH
Confidence 9999999999999999999999999984 589999999999999999 9999999999999999 999999999999
Q ss_pred HHhhccCCcchhhhHHHHHHHhCCCCCcchhhHHHHHhHhc
Q 002834 154 SACARLGGIFAGKSLHAYVIKFGLERHTLVGNSLTSMYAKR 194 (875)
Q Consensus 154 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 194 (875)
.+|++.|+++.|.+++++|.+.|..|+..||+.++..|+..
T Consensus 183 ~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 183 KVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999988864
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=3e-22 Score=219.51 Aligned_cols=322 Identities=10% Similarity=0.088 Sum_probs=268.3
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-C-CcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCcc---HHHHHH
Q 002834 490 DTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEK-R-NLVTFNPVISGYANCGSADEAFMTFSRIYARDLTP---WNLMIR 564 (875)
Q Consensus 490 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~ 564 (875)
+.+...+..+...|.+.|++++|...|+++... | +..+|..+..+|...|++++|...|+++...++.. +..++.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 102 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGH 102 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 556677788888999999999999999987763 3 67788888899999999999999999886655443 888899
Q ss_pred HHHHcCCchHHHHHHHHHHHCCCCCCc----chHhcH------------HHHhhcccchHHHHHHHHHHHHhcCCCchHH
Q 002834 565 VYAENDFPNQALSLFLKLQAQGMKPDA----VTIMSL------------LPVCSQMASVHLLRQCHGYVIRACFDGVRLN 628 (875)
Q Consensus 565 ~~~~~~~~~~A~~~~~~m~~~g~~p~~----~~~~~l------------l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 628 (875)
+|.+.|++++|...|+++.+. .|+. ..+..+ ...+...|+++.|...+..+.+..+.+..++
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 180 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELR 180 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 999999999999999998864 4543 333333 3347888999999999999999888888999
Q ss_pred HHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhh-HHHH-------
Q 002834 629 GALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVV-ITAV------- 697 (875)
Q Consensus 629 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~l------- 697 (875)
..++.+|.+.|++++|.+.|+++.+ .+..+|..++..|...|++++|+..|+++.+. .|+... +..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~ 258 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLN 258 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHH
Confidence 9999999999999999999998764 56789999999999999999999999999974 555444 3333
Q ss_pred -----HHHHhhcCcHHHHHHHHHHhHHHhCCCCC-----hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHH
Q 002834 698 -----LSACSHAGLVDEGLEIFRSIEKVQGIKPT-----PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTL 765 (875)
Q Consensus 698 -----l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l 765 (875)
..+|.+.|++++|.++|+++.+ +.|+ ..+|..++.++.+.|++++|++.++++. ..| +..+|..+
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 335 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYESVMK---TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDR 335 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH---HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 6789999999999999999988 4455 4488999999999999999999999974 444 67999999
Q ss_pred HHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHH------------HHHHhcC-----CchhHHHHHHH
Q 002834 766 LGACRIHHEVELGRVVANRLFEMEADNIGNYVVMS------------NLYAADA-----RWDGVVEIRKL 818 (875)
Q Consensus 766 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~g-----~~~~A~~~~~~ 818 (875)
+.+|...|+++.|+..++++++++|+++..+..++ +.|...| +.+++.+.+++
T Consensus 336 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 336 AEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999 4566667 34444554443
No 8
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.89 E-value=2.5e-17 Score=187.69 Aligned_cols=730 Identities=11% Similarity=0.109 Sum_probs=457.4
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHhhcCCCCCCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCCchhhhHHHHHH
Q 002834 9 WITIINGFCRDGLHKEALSLFAHELQSSPSVRHNHQLFSAVLKSCTSLADILLGKALHGYVTKLGHISCQAVSKALLNLY 88 (875)
Q Consensus 9 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 88 (875)
.+-++.++++.|.+++++..-+ +. +..|| |..||+.+.+.. .+.|..+-..+.+.. +.....+.+++.+
T Consensus 485 ~~Kvi~~l~~~gq~~ki~~Y~~---~~--~~~pD---y~~ll~~~~~~~-P~~~~~fa~~L~~~~--~p~~d~~~ivd~f 553 (1630)
T 1xi4_A 485 PNKVIQCFAETGQVQKIVLYAK---KV--GYTPD---WIFLLRNVMRIS-PDQGQQFAQMLVQDE--EPLADITQIVDVF 553 (1630)
T ss_pred cHHHHHHHHHhCCHHHHHHHHh---cc--CCCcc---HHHHHHHHhhcC-hHHHHHHHHHHhcCC--CCccCHHHHHHHH
Confidence 4678999999999988877632 22 24444 567777776543 555666555555542 2344456678888
Q ss_pred HccCCchHHHHhhccC-CC--------------------C---------Cc---hhHHHHHHHHhcCCCChhHHHHHHHH
Q 002834 89 AKCGVIDDCYKLFGQV-DN--------------------T---------DP---VTWNILLSGFACSHVDDARVMNLFYN 135 (875)
Q Consensus 89 ~~~g~~~~A~~~~~~~-~~--------------------~---------~~---~~~~~li~~~~~~~~~~~~a~~~~~~ 135 (875)
...+.+.++..++-+. +. | +. ..|..+-..|-+.| -+..|++.|..
T Consensus 554 ~~~~~iq~~t~fLld~lk~n~~e~~~LQTrlle~Nl~~~pqvadail~~~~fthyd~~~IA~LCE~aG-l~qrale~y~d 632 (1630)
T 1xi4_A 554 MEYNLIQQCTAFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAILGNQMFTHYDRAHIAQLCEKAG-LLQRALEHFTD 632 (1630)
T ss_pred HhcCcHHHHHHHHHHHHhCCChhhhhHhHHHHHHhhccchhHHHHHHhcCccccccHHHHHHHHHHcC-cHHHHHHhcCC
Confidence 8888888887766332 11 1 11 22555666677888 99999998875
Q ss_pred hHhcCC-CCCC-cchHHHHHHHhhccCCcchhhhHHHHHHHhCCCCCcchhhHHHHHhHhcCChhHHHHHhccCCC----
Q 002834 136 MHVRDQ-PKPN-SVTVAIVLSACARLGGIFAGKSLHAYVIKFGLERHTLVGNSLTSMYAKRGLVHDAYSVFDSIED---- 209 (875)
Q Consensus 136 m~~~~~-~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---- 209 (875)
+..-.. +..+ ...-.-|+..+. .=..+.+.+++..|++.+++-+..+.-.+..-|...=..+...++|++...
T Consensus 633 ~~dikR~~~~~~~~~~~~l~~~fg-~l~~~~s~~~l~~~l~~n~~qnlq~vvqva~ky~~~lg~~~li~~fe~~~~~egl 711 (1630)
T 1xi4_A 633 LYDIKRAVVHTHLLNPEWLVNYFG-SLSVEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEGL 711 (1630)
T ss_pred HHHHHHHhhccCcCCHHHHHHHHh-cCCHHHHHHHHHHHHHHhHhhhhhhhhhHHHHHHhhcCHHHHHHHHHHhcchhhH
Confidence 543210 1111 111122333333 345678888888888877666655444444445444445555666655441
Q ss_pred -----------CCeeeHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCChhhH-----------HhHHHHhccCCcccccc
Q 002834 210 -----------KDVVSWNAVISGLSENKVLGDAFRLFSWMLTEPIKPNYATI-----------LNILPICASLDEDVGYF 267 (875)
Q Consensus 210 -----------~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~-----------~~ll~~~~~~~~~~~~~ 267 (875)
.|.......|.+.++.|.+.+..++.++- .-..|. .+- ..+|..|-+.+
T Consensus 712 ~y~l~siv~~s~d~~vhfkyi~aa~~~~q~~everi~res--~~y~~e-~vk~flk~~kl~d~~pli~vCdr~~------ 782 (1630)
T 1xi4_A 712 FYFLGSIVNFSQDPDVHFKYIQAACKTGQIKEVERICRES--NCYDPE-RVKNFLKEAKLTDQLPLIIVCDRFD------ 782 (1630)
T ss_pred HHHHHhhccccCChHHHHHHHHHHHHhCCchhhhHHhccC--CCCCHH-HHHHHHhhCCCCCCCCceeeccccc------
Confidence 46667778899999999988888776651 111111 000 11333333332
Q ss_pred chhHHHHHHHHhcccCCchhHhhhHHHHhHhcCChhHHHHHhhhcCC---------------CCccchHHHHHHHHcCCC
Q 002834 268 FGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAELLFRRMKS---------------RDLVSWNAIIAGYASNDE 332 (875)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------------~~~~~~~~li~~~~~~g~ 332 (875)
...++...+-+.+.. ..|..|...-++..+-.+...+.. ++...-..|+...-+.++
T Consensus 783 ~v~~l~~yLy~n~~~--------~~ie~yv~~vnp~~~p~Vvg~lld~d~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnr 854 (1630)
T 1xi4_A 783 FVHDLVLYLYRNNLQ--------KYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAEVEKRNR 854 (1630)
T ss_pred cHHHHHHHHHhcCch--------hHHHHHHhccCCcccchhhhhhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 111221111111111 112222222111111111111110 223334555555556666
Q ss_pred HHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChhhH----------HHHHHHHHhcCCCCchh-----hHHHHHHH
Q 002834 333 WLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVG----------KEIHGYFLRHPYLEEDA-----AVGNALVS 397 (875)
Q Consensus 333 ~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a----------~~~~~~~~~~~~~~~~~-----~~~~~li~ 397 (875)
..--+..++.-...| ..|..+++++.+-+...++-.+. .-+=+...++.....-. ..-.-||+
T Consensus 855 Lkll~p~LE~~~~~g--~~~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~ 932 (1630)
T 1xi4_A 855 LKLLLPWLEARIHEG--CEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELIN 932 (1630)
T ss_pred HHHHHHHHHHHHhCC--CCCHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHH
Confidence 666666667666666 46777888888877765432221 11111111111000000 00112333
Q ss_pred HHhcCCChhH-HHHHHHhc-----------------------------CCCCcchHHHHHHHHhccCChhHHHHHHHHHH
Q 002834 398 FYAKCSDMEA-AYRTFLMI-----------------------------CRRDLISWNSMLDAFSESGYNSQFLNLLNCML 447 (875)
Q Consensus 398 ~~~~~g~~~~-A~~~~~~~-----------------------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 447 (875)
..-+.+-+.. |+-+.++. ...++.--...+..|...|.+.+|++++++..
T Consensus 933 vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKiv 1012 (1630)
T 1xi4_A 933 VCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIV 1012 (1630)
T ss_pred HHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3333333221 11111111 01133344566778889999999999999988
Q ss_pred HCCC--CCChhhHHHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCc
Q 002834 448 MEGI--RPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNL 525 (875)
Q Consensus 448 ~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~ 525 (875)
..+- .-+...-+.++.+..+. +...+.++.....+.. ...+...+...|.+++|..+|++... ..
T Consensus 1013 l~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d----------~~eIA~Iai~lglyEEAf~IYkKa~~--~~ 1079 (1630)
T 1xi4_A 1013 LDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD----------APDIANIAISNELFEEAFAIFRKFDV--NT 1079 (1630)
T ss_pred cCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc----------HHHHHHHHHhCCCHHHHHHHHHHcCC--HH
Confidence 4421 11223334455555454 6666666666654222 24577888899999999999999752 22
Q ss_pred ccHHHHHHHhhcCCChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhccc
Q 002834 526 VTFNPVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMA 605 (875)
Q Consensus 526 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~ 605 (875)
...+.++. ..+++++|.++.++. ..+..|..+..++.+.|++++|+..|.+. -|...|..+..+|.+.|
T Consensus 1080 ~A~~VLie---~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lG 1148 (1630)
T 1xi4_A 1080 SAVQVLIE---HIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSG 1148 (1630)
T ss_pred HHHHHHHH---HHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcC
Confidence 22333333 678899999999877 33566999999999999999999999663 46678888999999999
Q ss_pred chHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 002834 606 SVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLEL 685 (875)
Q Consensus 606 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 685 (875)
+++++.+++..+.+.. +++.+.+.++.+|++.+++++..... ..++...|..+...|...|++++|..+|...
T Consensus 1149 kyEEAIeyL~mArk~~-~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--- 1221 (1630)
T 1xi4_A 1149 NWEELVKYLQMARKKA-RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 1221 (1630)
T ss_pred CHHHHHHHHHHHHhhc-ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---
Confidence 9999999999888766 34444556999999999999655443 3456677888999999999999999999985
Q ss_pred CCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCCCCCCHHHHHHH
Q 002834 686 GVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMPVEADCNVWGTL 765 (875)
Q Consensus 686 g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 765 (875)
..|..+..++.+.|++++|.+.+++. -+..+|..+..++...|++..|........ -++..+..+
T Consensus 1222 ------~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~acve~~Ef~LA~~cgl~Ii--v~~deLeel 1286 (1630)
T 1xi4_A 1222 ------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV--VHADELEEL 1286 (1630)
T ss_pred ------hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh--cCHHHHHHH
Confidence 48889999999999999999999877 235788889999999999999998877643 344556688
Q ss_pred HHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhc--CCchhHHHHH
Q 002834 766 LGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAAD--ARWDGVVEIR 816 (875)
Q Consensus 766 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~ 816 (875)
...|...|.++.|+..+++++.++|.+.+.+.-|+.+|++- ++..++++.+
T Consensus 1287 i~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f 1339 (1630)
T 1xi4_A 1287 INYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELF 1339 (1630)
T ss_pred HHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 88899999999999999999999999999998888888774 4555555543
No 9
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.89 E-value=3e-17 Score=187.14 Aligned_cols=729 Identities=10% Similarity=0.028 Sum_probs=463.2
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHhhcCCCCCCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCC------------
Q 002834 9 WITIINGFCRDGLHKEALSLFAHELQSSPSVRHNHQLFSAVLKSCTSLADILLGKALHGYVTKLGHIS------------ 76 (875)
Q Consensus 9 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 76 (875)
|..||+.+.+.+ ++.|.++-..+....+ ....+..+...+...+.+.++..++-++.+.+.+.
T Consensus 514 y~~ll~~~~~~~-P~~~~~fa~~L~~~~~----p~~d~~~ivd~f~~~~~iq~~t~fLld~lk~n~~e~~~LQTrlle~N 588 (1630)
T 1xi4_A 514 WIFLLRNVMRIS-PDQGQQFAQMLVQDEE----PLADITQIVDVFMEYNLIQQCTAFLLDALKNNRPSEGPLQTRLLEMN 588 (1630)
T ss_pred HHHHHHHHhhcC-hHHHHHHHHHHhcCCC----CccCHHHHHHHHHhcCcHHHHHHHHHHHHhCCChhhhhHhHHHHHHh
Confidence 556666665443 5555555544444321 12223444445555555555555554444433221
Q ss_pred -----------------CchhhhHHHHHHHccCCchHHHHhhccCCC-------CCchhHHHHHHHHhcCCCChhHHHHH
Q 002834 77 -----------------CQAVSKALLNLYAKCGVIDDCYKLFGQVDN-------TDPVTWNILLSGFACSHVDDARVMNL 132 (875)
Q Consensus 77 -----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~~~~~~~a~~~ 132 (875)
+.+-...+...|-+.|-+..|++.+..+.. .+...-..++.-+.+ = ..+.++++
T Consensus 589 l~~~pqvadail~~~~fthyd~~~IA~LCE~aGl~qrale~y~d~~dikR~~~~~~~~~~~~l~~~fg~-l-~~~~s~~~ 666 (1630)
T 1xi4_A 589 LMHAPQVADAILGNQMFTHYDRAHIAQLCEKAGLLQRALEHFTDLYDIKRAVVHTHLLNPEWLVNYFGS-L-SVEDSLEC 666 (1630)
T ss_pred hccchhHHHHHHhcCccccccHHHHHHHHHHcCcHHHHHHhcCCHHHHHHHhhccCcCCHHHHHHHHhc-C-CHHHHHHH
Confidence 334445667888899999999999976531 122223345555544 3 68999999
Q ss_pred HHHhHhcCCCCCCcchHHHHHHHhhccCCcchhhhHHHHHHH-----------hCCCCCcchhhHHHHHhHhcCChhHHH
Q 002834 133 FYNMHVRDQPKPNSVTVAIVLSACARLGGIFAGKSLHAYVIK-----------FGLERHTLVGNSLTSMYAKRGLVHDAY 201 (875)
Q Consensus 133 ~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----------~g~~~~~~~~~~li~~~~~~g~~~~A~ 201 (875)
+.+|...+ ++-|......+..-|...=..+....+|+.... -.+..|+.+....|.+.++.|++.+.+
T Consensus 667 l~~~l~~n-~~qnlq~vvqva~ky~~~lg~~~li~~fe~~~~~egl~y~l~siv~~s~d~~vhfkyi~aa~~~~q~~eve 745 (1630)
T 1xi4_A 667 LRAMLSAN-IRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYIQAACKTGQIKEVE 745 (1630)
T ss_pred HHHHHHHh-HhhhhhhhhhHHHHHHhhcCHHHHHHHHHHhcchhhHHHHHHhhccccCChHHHHHHHHHHHHhCCchhhh
Confidence 99999866 554433322222222222222222333332211 125678889999999999999999998
Q ss_pred HHhccCCC---------------CCee----------------------eHHHHHHHHHcCCCcchHHHHHHHHHhCCCC
Q 002834 202 SVFDSIED---------------KDVV----------------------SWNAVISGLSENKVLGDAFRLFSWMLTEPIK 244 (875)
Q Consensus 202 ~~~~~~~~---------------~~~~----------------------~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~ 244 (875)
++..+-.- +|.. .....|..|.+.-++..+-.+...+...+..
T Consensus 746 ri~res~~y~~e~vk~flk~~kl~d~~pli~vCdr~~~v~~l~~yLy~n~~~~~ie~yv~~vnp~~~p~Vvg~lld~d~~ 825 (1630)
T 1xi4_A 746 RICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCS 825 (1630)
T ss_pred HHhccCCCCCHHHHHHHHhhCCCCCCCCceeeccccccHHHHHHHHHhcCchhHHHHHHhccCCcccchhhhhhhcCCCC
Confidence 88766320 1110 1123355565554443333333222221110
Q ss_pred -----------CChhhHHhHHHHhccCCccccccchhHHHHHHHHhcccCCchhHhhhHHHHhHhcCChhHHHHHhhhcC
Q 002834 245 -----------PNYATILNILPICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAELLFRRMK 313 (875)
Q Consensus 245 -----------p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 313 (875)
.+......++..+-+.. .+.......+.-+..|.. ++.++|+|...|...++--+ +.+.+
T Consensus 826 e~~ik~ll~~v~~~~~~~~lv~~~ekrn---rLkll~p~LE~~~~~g~~--~~~~hnalakiyid~n~npe--~fL~~-- 896 (1630)
T 1xi4_A 826 EDVIKNLILVVRGQFSTDELVAEVEKRN---RLKLLLPWLEARIHEGCE--EPATHNALAKIYIDSNNNPE--RFLRE-- 896 (1630)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHH---HHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHhccCCCHH--HHhhc--
Confidence 11222344555544444 444444444444444433 78899999999997654222 11111
Q ss_pred CCCccchHHHHHHHHcCCCHHHHHHHHHH-----------------------HHHcCCCCCChhhHHHHHHHHhccCChh
Q 002834 314 SRDLVSWNAIIAGYASNDEWLKALNLFCE-----------------------LITKEMIWPDSVTLVSLLPACAYLKNLK 370 (875)
Q Consensus 314 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~-----------------------m~~~~~~~pd~~t~~~ll~~~~~~~~~~ 370 (875)
|..-=..++.-||...++--|.-.|++ +.++ -|...|..++. .+-+
T Consensus 897 --n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r----~d~~lW~~vl~-----~~n~ 965 (1630)
T 1xi4_A 897 --NPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRR----KDPELWGSVLL-----ESNP 965 (1630)
T ss_pred --cCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHh----cCHHHHHHHhc-----CCcH
Confidence 111111223334444444333333322 0111 23333333331 1112
Q ss_pred hHHHHHHHHHhcCCCC-chhhHHHHHHHHHhcCCChhHHHHHHHhcCCC------CcchHHHHHHHHhccCChhHHHHHH
Q 002834 371 VGKEIHGYFLRHPYLE-EDAAVGNALVSFYAKCSDMEAAYRTFLMICRR------DLISWNSMLDAFSESGYNSQFLNLL 443 (875)
Q Consensus 371 ~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~ 443 (875)
.-+++.++.....++. .++.-....+..|...|...+|.++++++... +...-+.++.+..+. +..+..+..
T Consensus 966 ~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI 1044 (1630)
T 1xi4_A 966 YRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYI 1044 (1630)
T ss_pred HHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHH
Confidence 3334444443333211 11113367788888999999999999988532 224455677666666 456666666
Q ss_pred HHHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCC
Q 002834 444 NCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKR 523 (875)
Q Consensus 444 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 523 (875)
.+.... + ..-+-..|...+.+++|..+++...... .++-..+...+++++|.++.++..
T Consensus 1045 ~kLd~~----d---~~eIA~Iai~lglyEEAf~IYkKa~~~~-----------~A~~VLie~i~nldrAiE~Aervn--- 1103 (1630)
T 1xi4_A 1045 NRLDNY----D---APDIANIAISNELFEEAFAIFRKFDVNT-----------SAVQVLIEHIGNLDRAYEFAERCN--- 1103 (1630)
T ss_pred HHhhhc----c---HHHHHHHHHhCCCHHHHHHHHHHcCCHH-----------HHHHHHHHHHhhHHHHHHHHHhcC---
Confidence 555421 1 2335566778899999999998853111 112222338899999999999763
Q ss_pred CcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhc
Q 002834 524 NLVTFNPVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQ 603 (875)
Q Consensus 524 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~ 603 (875)
+..+|..+..++...|++++|+..|.+. .++..|..++.++.+.|++++|++.|....+.. +++...+.+.-+|++
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAK 1179 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAK 1179 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHh
Confidence 5789999999999999999999999775 667779999999999999999999999877754 444444468889999
Q ss_pred ccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 002834 604 MASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDML 683 (875)
Q Consensus 604 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 683 (875)
.++++....+. .+. +...+..+.+.|...|++++|..+|..+ ..|..+..+|.+.|++++|++.+++.
T Consensus 1180 l~rleele~fI-----~~~-n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA- 1247 (1630)
T 1xi4_A 1180 TNRLAELEEFI-----NGP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA- 1247 (1630)
T ss_pred hcCHHHHHHHH-----hCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh-
Confidence 98888655442 122 4455567999999999999999999986 47999999999999999999999986
Q ss_pred HCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCCH-HH
Q 002834 684 ELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP-VEADC-NV 761 (875)
Q Consensus 684 ~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~ 761 (875)
.+..+|..+..+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++... .+|.. ..
T Consensus 1248 -----~n~~aWkev~~acve~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gm 1316 (1630)
T 1xi4_A 1248 -----NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGM 1316 (1630)
T ss_pred -----CCHHHHHHHHHHHhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHH
Confidence 4568999999999999999999886643 44466778899999999999999999998874 45543 56
Q ss_pred HHHHHHHHHhc--CChhHHHHHHHHHhcccC-----CCCccHHHHHHHHHhcCCchhHHH
Q 002834 762 WGTLLGACRIH--HEVELGRVVANRLFEMEA-----DNIGNYVVMSNLYAADARWDGVVE 814 (875)
Q Consensus 762 ~~~l~~~~~~~--~~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~ 814 (875)
|..|..++.+. +++..+.+.|..-+.+.| +++..|.-+..+|.+.|+|++|..
T Consensus 1317 ftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1317 FTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 66666666554 577788888888888877 788889999999999999999995
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2.6e-21 Score=216.26 Aligned_cols=238 Identities=8% Similarity=-0.055 Sum_probs=142.6
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhc
Q 002834 559 WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKC 638 (875)
Q Consensus 559 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 638 (875)
+..+...+...|++++|+..|+++.+.. |+...+..+...+...|+++.|...+..+.+..+.+..++..+...|...
T Consensus 240 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 240 LEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFIL 317 (514)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHh
Confidence 4455555566666666666666655542 22344444444455555555555555555444444445555666666666
Q ss_pred CCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHH
Q 002834 639 GSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFR 715 (875)
Q Consensus 639 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~ 715 (875)
|++++|...|++..+ .+..+|..+...|...|++++|+..++++.+.. +.+...+..+...+...|++++|.++++
T Consensus 318 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp TCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 666666666665432 344566666666677777777777777766641 2334556666667777777777777777
Q ss_pred HhHHHhCCCCC----hhHHHHHHHHhhc---CCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 002834 716 SIEKVQGIKPT----PEQYASLVDLLAR---GGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLF 786 (875)
Q Consensus 716 ~~~~~~~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 786 (875)
++.+...-.|+ ...+..++.++.. .|++++|.+.++++. ..| +..+|..+...+...|+++.|...+++++
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 76653222222 2266667777777 777777777776653 233 45666666677777777777777777777
Q ss_pred cccCCCCccHHHH
Q 002834 787 EMEADNIGNYVVM 799 (875)
Q Consensus 787 ~~~p~~~~~~~~l 799 (875)
+++|+++..+..+
T Consensus 477 ~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 477 DLARTMEEKLQAI 489 (514)
T ss_dssp HHCSSHHHHHHHH
T ss_pred HhccccHHHHHHH
Confidence 7777766655544
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=8e-21 Score=212.26 Aligned_cols=259 Identities=8% Similarity=-0.077 Sum_probs=220.2
Q ss_pred HHHHHHHHHH---cCCchHHHHHHHHHHH-----CCCCCC--------cchHhcHHHHhhcccchHHHHHHHHHHHHhcC
Q 002834 559 WNLMIRVYAE---NDFPNQALSLFLKLQA-----QGMKPD--------AVTIMSLLPVCSQMASVHLLRQCHGYVIRACF 622 (875)
Q Consensus 559 ~~~l~~~~~~---~~~~~~A~~~~~~m~~-----~g~~p~--------~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~ 622 (875)
+..+...+.. .|++++|+..|+++.+ ....|+ ...+..+...+...|+++.|...+..+.+..+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~ 268 (514)
T 2gw1_A 189 ELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP 268 (514)
T ss_dssp HHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc
Confidence 4444444454 8999999999999987 322332 34566777888999999999999999999988
Q ss_pred CCchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 002834 623 DGVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLS 699 (875)
Q Consensus 623 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 699 (875)
. ...+..+...|...|++++|...|+++.. .+..+|..+...|...|++++|+..|+++.+.. +.+...+..+..
T Consensus 269 ~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 346 (514)
T 2gw1_A 269 R-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLAC 346 (514)
T ss_dssp C-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHH
T ss_pred c-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHH
Confidence 8 88999999999999999999999997654 466789999999999999999999999999853 335667888888
Q ss_pred HHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHh
Q 002834 700 ACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP----VEAD----CNVWGTLLGACRI 771 (875)
Q Consensus 700 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~ 771 (875)
.+...|++++|..+++++.+. .+.+...+..++.++.+.|++++|.+.++++. ..++ ...|..+...+..
T Consensus 347 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 424 (514)
T 2gw1_A 347 LAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTR 424 (514)
T ss_dssp HTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhh
Confidence 999999999999999999873 22245688999999999999999999998873 2222 3488999999999
Q ss_pred ---cCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 772 ---HHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 772 ---~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
.|+++.|+..++++++.+|+++..+..++.+|...|++++|.+.++...+
T Consensus 425 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 425 NPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp SCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999887765
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.86 E-value=1.3e-19 Score=203.71 Aligned_cols=216 Identities=12% Similarity=-0.018 Sum_probs=108.5
Q ss_pred hhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHH
Q 002834 601 CSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALK 677 (875)
Q Consensus 601 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 677 (875)
+...|+++.|...+..+.+..+. ...+..+...|...|++++|...|+++.+ .+..+|..+...+...|++++|+.
T Consensus 253 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 253 HFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 33334444444444444444333 33444444445555555555555544332 234455555555555555555555
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC--
Q 002834 678 VFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-- 754 (875)
Q Consensus 678 ~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 754 (875)
.|+++.+.. +.+...+..+..++...|++++|.++++++.+. .|+ ...+..++.++...|++++|.+.++++.
T Consensus 332 ~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 332 DFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK---FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp HHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 555555531 222344455555555556666666665555542 222 3355555555555566666655555541
Q ss_pred --CCC----CHHHHHHHHHHHHhc----------CChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHH
Q 002834 755 --VEA----DCNVWGTLLGACRIH----------HEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKL 818 (875)
Q Consensus 755 --~~p----~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 818 (875)
..+ ....+..+...+... |+++.|+..++++++.+|+++..+..++.+|...|++++|.+.++.
T Consensus 408 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 487 (537)
T 3fp2_A 408 EEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFED 487 (537)
T ss_dssp HHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 011 111122333444444 6666666666666666666666666666666666666666665555
Q ss_pred HHh
Q 002834 819 MKT 821 (875)
Q Consensus 819 ~~~ 821 (875)
..+
T Consensus 488 al~ 490 (537)
T 3fp2_A 488 SAI 490 (537)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 13
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.86 E-value=1.4e-19 Score=198.32 Aligned_cols=345 Identities=9% Similarity=-0.040 Sum_probs=227.5
Q ss_pred CcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHH
Q 002834 419 DLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNA 498 (875)
Q Consensus 419 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 498 (875)
+...|..+...+.+.|++++|+.+|+++.... +.+...+..+..++...|+++.|...++.+.+.+ +.+...+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~ 99 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK----MDFTAARLQ 99 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CCcHHHHHH
Confidence 45567788888888899999999998888753 3356667777777778888888888888877765 556777888
Q ss_pred HHHHHHhcCCHHHHHHHHHhhccC-C-Cc---ccHHHHHHHhhcCCChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCch
Q 002834 499 ILDAYAKCRNIKYAFNVFQSLLEK-R-NL---VTFNPVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPN 573 (875)
Q Consensus 499 li~~~~~~g~~~~A~~~~~~~~~~-p-~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 573 (875)
+...|.+.|++++|.+.|+++... | +. ..+..++..+...+ +..+...+.+.|+++
T Consensus 100 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------------------~~~~a~~~~~~~~~~ 160 (450)
T 2y4t_A 100 RGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR-------------------LRSQALNAFGSGDYT 160 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH-------------------HHHHHHHHHHcCCHH
Confidence 888888888888888888887764 3 23 45555544311000 111222334444455
Q ss_pred HHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC
Q 002834 574 QALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ 653 (875)
Q Consensus 574 ~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 653 (875)
+|+..|+++.+.. +.+...+..+..++...|+.+.|...+..+.+..+.+...+..++..|.+.|++++|...|+++..
T Consensus 161 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 161 AAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555554444321 112333444444444445555555555544444444555556666666666666666666665443
Q ss_pred --C-ChhhHHHH------------HHHHHHcCChHHHHHHHHHHHHCCCCCC-----hhhHHHHHHHHhhcCcHHHHHHH
Q 002834 654 --K-DVVMLTAM------------IGGYAMHGMGKAALKVFSDMLELGVNPD-----HVVITAVLSACSHAGLVDEGLEI 713 (875)
Q Consensus 654 --~-~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~ll~a~~~~g~~~~a~~~ 713 (875)
| +...+..+ +..+...|++++|+..|+++.+. .|+ ...+..+..++.+.|++++|.+.
T Consensus 240 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 317 (450)
T 2y4t_A 240 LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRV 317 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 2 33334333 78888899999999999998884 455 33677777888899999999999
Q ss_pred HHHhHHHhCCCC-ChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCC-HHHHHHHHHH------------HHhcC-----
Q 002834 714 FRSIEKVQGIKP-TPEQYASLVDLLARGGQISDAYSLVNRMP-VEAD-CNVWGTLLGA------------CRIHH----- 773 (875)
Q Consensus 714 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~------------~~~~~----- 773 (875)
++++.+ ..| +...|..++.+|...|++++|.+.++++. ..|+ ...+..+..+ |...|
T Consensus 318 ~~~a~~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~ 394 (450)
T 2y4t_A 318 CSEVLQ---MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNA 394 (450)
T ss_dssp HHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTC
T ss_pred HHHHHH---hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccC
Confidence 998877 345 45688889999999999999999998873 5564 4566655532 33333
Q ss_pred ChhHHHHHHHH-HhcccCCCC
Q 002834 774 EVELGRVVANR-LFEMEADNI 793 (875)
Q Consensus 774 ~~~~a~~~~~~-~~~~~p~~~ 793 (875)
+.+.+.+.+++ +++..|++.
T Consensus 395 ~~~~~~~~y~~~~l~~~pd~~ 415 (450)
T 2y4t_A 395 KKQEIIKAYRKLALQWHPDNF 415 (450)
T ss_dssp CTTHHHHHHHHHHHHSCGGGC
T ss_pred CHHHHHHHHHHHHHHhCCCCC
Confidence 56777888886 788888764
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.86 E-value=2.9e-19 Score=200.79 Aligned_cols=255 Identities=8% Similarity=-0.045 Sum_probs=203.7
Q ss_pred ChHHHHHHHHhhhcCCCcc----------HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHH
Q 002834 540 SADEAFMTFSRIYARDLTP----------WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHL 609 (875)
Q Consensus 540 ~~~~A~~~~~~~~~~~~~~----------~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~ 609 (875)
++++|..+++++...++.. +..+...+...|++++|+..|+++.+. .|+...+..+...+...|+++.
T Consensus 217 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 294 (537)
T 3fp2_A 217 LLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQE 294 (537)
T ss_dssp HHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHH
T ss_pred HHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHH
Confidence 5566666666665544432 455667778889999999999988875 4566777788888889999999
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 002834 610 LRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELG 686 (875)
Q Consensus 610 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 686 (875)
|...+..+.+..+.+..++..+...|...|++++|...|++..+ .+...|..+...|...|++++|+..++++.+..
T Consensus 295 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 374 (537)
T 3fp2_A 295 FFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF 374 (537)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999988888888899999999999999999999997654 456789999999999999999999999999863
Q ss_pred CCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC----hhHHHHHHHHhhcC----------CChHHHHHHHHh
Q 002834 687 VNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT----PEQYASLVDLLARG----------GQISDAYSLVNR 752 (875)
Q Consensus 687 ~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~ 752 (875)
+.+...+..+...+...|++++|.+.|+++.+...-.++ ...+..++.++.+. |++++|...+++
T Consensus 375 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 453 (537)
T 3fp2_A 375 -PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTK 453 (537)
T ss_dssp -TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHH
T ss_pred -CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHH
Confidence 444567888888999999999999999998774322222 22345566778887 999999999998
Q ss_pred CC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHH
Q 002834 753 MP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYV 797 (875)
Q Consensus 753 ~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 797 (875)
+. ..| +..+|..+..++...|+.+.|...+++++++.|+++....
T Consensus 454 a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 454 ACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 84 344 5688999999999999999999999999999999876544
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.81 E-value=7.4e-18 Score=178.23 Aligned_cols=303 Identities=11% Similarity=0.092 Sum_probs=170.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhhccC-C-CcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCcc---HHHHHHHHHH
Q 002834 494 NIGNAILDAYAKCRNIKYAFNVFQSLLEK-R-NLVTFNPVISGYANCGSADEAFMTFSRIYARDLTP---WNLMIRVYAE 568 (875)
Q Consensus 494 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~ 568 (875)
..+..+...+...|++++|...|+++... | +..++..+...+...|++++|...++++...++.. |..+..+|..
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLK 83 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 34455666667777777777777766553 3 45566666777777777777777777765543332 6677777777
Q ss_pred cCCchHHHHHHHHHHHCCCCC---Cc-chHhcH------------HHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHH
Q 002834 569 NDFPNQALSLFLKLQAQGMKP---DA-VTIMSL------------LPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALL 632 (875)
Q Consensus 569 ~~~~~~A~~~~~~m~~~g~~p---~~-~~~~~l------------l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 632 (875)
.|++++|+..|+++.+. .| +. ..+..+ ...+...|+.+.|...+..+.+..+.+..++..+.
T Consensus 84 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA 161 (359)
T ss_dssp HTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 77777787777777654 34 21 122222 23444455555555555555555544555555555
Q ss_pred HHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHH------------H
Q 002834 633 HLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDH-VVIT------------A 696 (875)
Q Consensus 633 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~------------~ 696 (875)
..|...|++++|...+++..+ .+..+|..+...+...|++++|+..|++..+. .|+. ..+. .
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~ 239 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIE 239 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHH
Confidence 666666666666666654433 34455556666666666666666666665553 2322 1111 1
Q ss_pred HHHHHhhcCcHHHHHHHHHHhHHHhCCCCCh-----hHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHH
Q 002834 697 VLSACSHAGLVDEGLEIFRSIEKVQGIKPTP-----EQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGAC 769 (875)
Q Consensus 697 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~ 769 (875)
+...+.+.|++++|.+.++++.+. .|+. ..+..++.++...|++++|.+.+++.. ..| ++.+|..+..++
T Consensus 240 ~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (359)
T 3ieg_A 240 SAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY 316 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 133455556666666666655542 2221 123345555556666666666655553 223 445555555555
Q ss_pred HhcCChhHHHHHHHHHhcccCCCCccHHHHHHHH
Q 002834 770 RIHHEVELGRVVANRLFEMEADNIGNYVVMSNLY 803 (875)
Q Consensus 770 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 803 (875)
...|+++.|...++++++++|+++..+..++.++
T Consensus 317 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 317 LIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQ 350 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 5566666666666666666666555555554443
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.81 E-value=1.2e-17 Score=176.54 Aligned_cols=314 Identities=12% Similarity=0.067 Sum_probs=259.0
Q ss_pred CcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCcc---HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHH
Q 002834 524 NLVTFNPVISGYANCGSADEAFMTFSRIYARDLTP---WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPV 600 (875)
Q Consensus 524 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a 600 (875)
++..+..+...+...|++++|...|+++...++.. +..+..+|...|++++|+..|+++.+.. +.+...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 34567788889999999999999999997665543 8899999999999999999999998753 2245677788889
Q ss_pred hhcccchHHHHHHHHHHHHhcC---CCchHHHHH------------HHHhHhcCCHHHHHHHhccCCC---CChhhHHHH
Q 002834 601 CSQMASVHLLRQCHGYVIRACF---DGVRLNGAL------------LHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAM 662 (875)
Q Consensus 601 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 662 (875)
+...|+.+.|...+..+.+..+ .+...+..+ ...+...|++++|.+.|+++.+ .+...|..+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 160 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELR 160 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 9999999999999999999888 655555555 6889999999999999998654 567889999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChh-HHH----------
Q 002834 663 IGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPE-QYA---------- 731 (875)
Q Consensus 663 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~---------- 731 (875)
...+...|++++|+..++++.+.. +.+...+..+...+...|++++|.+.|+++.+ ..|+.. .+.
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLK---LDQDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCccchHHHHHHHHHHHHHH
Confidence 999999999999999999999852 44667788888899999999999999999987 344432 222
Q ss_pred --HHHHHhhcCCChHHHHHHHHhCC-CCCC-H----HHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHH
Q 002834 732 --SLVDLLARGGQISDAYSLVNRMP-VEAD-C----NVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLY 803 (875)
Q Consensus 732 --~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 803 (875)
.++..+.+.|++++|.+.++++. ..|+ . ..+..+..++...|+++.|...++++++.+|+++..+..+|.+|
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY 316 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 33777999999999999999874 3443 3 23455777888999999999999999999999999999999999
Q ss_pred HhcCCchhHHHHHHHHHhCCCcCCCceeEEEeCCEEeEEecCCCCCCChHHHHHHHHHHHHHHHh
Q 002834 804 AADARWDGVVEIRKLMKTRDLKKPAACSWIEVERKNNAFMAGDYSHPRRDMIYWVLSILDEQIKD 868 (875)
Q Consensus 804 ~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~ 868 (875)
...|++++|.+.++...+. .|...++...+..+...+++
T Consensus 317 ~~~g~~~~A~~~~~~a~~~--------------------------~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 317 LIEEMYDEAIQDYEAAQEH--------------------------NENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTT--------------------------CTTCHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhc--------------------------CCCChHHHHHHHHHHHHHHH
Confidence 9999999999999887642 35555666666666666554
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.78 E-value=4.8e-17 Score=169.70 Aligned_cols=285 Identities=11% Similarity=0.019 Sum_probs=194.9
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-C-CcccHHHHHHHhhcCCChHHHHHHHHhhhcCCC---ccHHHHHH
Q 002834 490 DTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEK-R-NLVTFNPVISGYANCGSADEAFMTFSRIYARDL---TPWNLMIR 564 (875)
Q Consensus 490 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~ 564 (875)
+.+..++..+...+...|++++|.++|+++... | +...+..++..+...|++++|...++++...++ ..|..+..
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 98 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGC 98 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 444555566666666667777777766666543 3 334455555556555555555555555433222 22455555
Q ss_pred HHHHcC-CchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHH
Q 002834 565 VYAEND-FPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFS 643 (875)
Q Consensus 565 ~~~~~~-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 643 (875)
.+...| ++++|...|++.. +..+.+...+..+...|...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~-----------------------------------~~~~~~~~~~~~l~~~~~~~~~~~~ 143 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKAT-----------------------------------TLEKTYGPAWIAYGHSFAVESEHDQ 143 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHH-----------------------------------TTCTTCTHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhhhhHHHHHHHHHHHH-----------------------------------HhCCccHHHHHHHHHHHHHccCHHH
Confidence 555555 5555555555544 3333344555666777777788888
Q ss_pred HHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHH
Q 002834 644 ASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKV 720 (875)
Q Consensus 644 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 720 (875)
|...|++..+ .+...|..+...|...|++++|++.+++..+.. +.+...+..+...+...|++++|..+++++.+.
T Consensus 144 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 222 (330)
T 3hym_B 144 AMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEK 222 (330)
T ss_dssp HHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 8777776553 345667778888888889999999998888752 344567777788888899999999999888774
Q ss_pred hCC-------CCChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCC
Q 002834 721 QGI-------KPTPEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEAD 791 (875)
Q Consensus 721 ~~~-------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 791 (875)
..- +.....+..++.++.+.|++++|.+.++++. ..| +...|..+..++...|+++.|...++++++++|+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 302 (330)
T 3hym_B 223 IKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD 302 (330)
T ss_dssp HTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC
T ss_pred hhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC
Confidence 311 2335688888999999999999999888874 333 5678888888889999999999999999999999
Q ss_pred CCccHHHHHHHH-HhcCCch
Q 002834 792 NIGNYVVMSNLY-AADARWD 810 (875)
Q Consensus 792 ~~~~~~~l~~~~-~~~g~~~ 810 (875)
++..+..++.+| ...|+.+
T Consensus 303 ~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 303 DTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp CHHHHHHHHHHHHTTTTC--
T ss_pred chHHHHHHHHHHHHHhCchh
Confidence 999999999888 4455543
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.75 E-value=1.8e-16 Score=165.36 Aligned_cols=257 Identities=10% Similarity=-0.028 Sum_probs=203.0
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhc
Q 002834 559 WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKC 638 (875)
Q Consensus 559 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 638 (875)
+..++..+...|++++|+.+|+++.+.. +.+...+..+...+...|+.+.+...+..+.+..+.+...+..+...|...
T Consensus 25 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 103 (330)
T 3hym_B 25 VVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMV 103 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 3344444455566666666666655432 122233344445555666666666666666666555677778888999999
Q ss_pred C-CHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHH
Q 002834 639 G-SIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIF 714 (875)
Q Consensus 639 g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~ 714 (875)
| ++++|...|++..+ .+...|..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|.+++
T Consensus 104 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (330)
T 3hym_B 104 GHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFF 182 (330)
T ss_dssp CSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9 99999999998654 456789999999999999999999999999853 334566777888999999999999999
Q ss_pred HHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-C----------CCCHHHHHHHHHHHHhcCChhHHHHHH
Q 002834 715 RSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-V----------EADCNVWGTLLGACRIHHEVELGRVVA 782 (875)
Q Consensus 715 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----------~p~~~~~~~l~~~~~~~~~~~~a~~~~ 782 (875)
+++.+ ..|+ ...+..++.++.+.|++++|...++++. . +....+|..+..++...|+++.|+..+
T Consensus 183 ~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 259 (330)
T 3hym_B 183 SQALS---IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYH 259 (330)
T ss_dssp HHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHH---hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 99976 4555 5689999999999999999999998873 1 334578999999999999999999999
Q ss_pred HHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHH
Q 002834 783 NRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMK 820 (875)
Q Consensus 783 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 820 (875)
+++++++|+++..+..++.+|...|++++|.+.++...
T Consensus 260 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 260 RQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTAL 297 (330)
T ss_dssp HHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred HHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999987654
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.75 E-value=4.1e-17 Score=173.18 Aligned_cols=255 Identities=13% Similarity=0.001 Sum_probs=176.0
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhc
Q 002834 559 WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKC 638 (875)
Q Consensus 559 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 638 (875)
+..+...|.+.|++++|+..|+++.+.. +.+...+..+..++...|+++.|...+..+.+..+.+...+..++..|...
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 145 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNE 145 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence 3344444444444444444444444331 112233334444444444444444444444444444444555555556666
Q ss_pred CCHHHHHHHhccCCC--C-ChhhHHH---------------HHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHH
Q 002834 639 GSIFSASKIFQCHPQ--K-DVVMLTA---------------MIGGYAMHGMGKAALKVFSDMLELGVNP-DHVVITAVLS 699 (875)
Q Consensus 639 g~~~~A~~~~~~~~~--~-~~~~~~~---------------li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~ 699 (875)
|++++|...|+++.. | +...+.. .+..+...|++++|+..|+++.+..... +..++..+..
T Consensus 146 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~ 225 (368)
T 1fch_A 146 SLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV 225 (368)
T ss_dssp TCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHH
Confidence 666666665554332 1 1111111 1333348899999999999999853211 4678888888
Q ss_pred HHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChh
Q 002834 700 ACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVE 776 (875)
Q Consensus 700 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~ 776 (875)
.+...|++++|.+.|+++.+ ..|+ ...+..++.++.+.|++++|.+.++++. ..| +..+|..+..++...|+++
T Consensus 226 ~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~ 302 (368)
T 1fch_A 226 LFNLSGEYDKAVDCFTAALS---VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHR 302 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH
Confidence 99999999999999999987 3454 5689999999999999999999999874 344 5688999999999999999
Q ss_pred HHHHHHHHHhcccCCC-----------CccHHHHHHHHHhcCCchhHHHHHH
Q 002834 777 LGRVVANRLFEMEADN-----------IGNYVVMSNLYAADARWDGVVEIRK 817 (875)
Q Consensus 777 ~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~ 817 (875)
.|...+++++++.|++ +..|..++.+|...|++++|..+++
T Consensus 303 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 303 EAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 9999999999999988 7789999999999999999999865
No 20
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.72 E-value=5.4e-16 Score=156.88 Aligned_cols=271 Identities=9% Similarity=-0.009 Sum_probs=180.1
Q ss_pred HHHHhcCCHHHHHHHHHhhccC-CCc--ccHHHHHHHhhcCCChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCchHHHH
Q 002834 501 DAYAKCRNIKYAFNVFQSLLEK-RNL--VTFNPVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALS 577 (875)
Q Consensus 501 ~~~~~~g~~~~A~~~~~~~~~~-p~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 577 (875)
.-....|++..|+..++..... |+. .....+..+|...|+++.|...++...+++...+..+...+...++.++|++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 3445678888888888776554 322 2445566777777777777766654322222226666667777777777777
Q ss_pred HHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCCCChh
Q 002834 578 LFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQKDVV 657 (875)
Q Consensus 578 ~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 657 (875)
.++++...+..|+. +..+..+...|...|++++|++.|++ ..+..
T Consensus 87 ~l~~ll~~~~~P~~---------------------------------~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~ 131 (291)
T 3mkr_A 87 ELDREMSRSVDVTN---------------------------------TTFLLMAASIYFYDQNPDAALRTLHQ--GDSLE 131 (291)
T ss_dssp HHHHHHHSCCCCSC---------------------------------HHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHH
T ss_pred HHHHHHhcccCCCC---------------------------------HHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHH
Confidence 77777766555653 33344556677888888888888888 45677
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHH---HHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHH
Q 002834 658 MLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVIT---AVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLV 734 (875)
Q Consensus 658 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~---~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 734 (875)
++..++..|.+.|++++|++.|+++.+. .|+..... ..+..+...|++++|..+|+++.+. .+.+...+..++
T Consensus 132 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la 207 (291)
T 3mkr_A 132 CMAMTVQILLKLDRLDLARKELKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQA 207 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHH
Confidence 8888888888888888888888888875 45543211 1223333457888888888888773 334455777777
Q ss_pred HHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhH-HHHHHHHHhcccCCCCccHHHHHHHHHhcCCchh
Q 002834 735 DLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVEL-GRVVANRLFEMEADNIGNYVVMSNLYAADARWDG 811 (875)
Q Consensus 735 ~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 811 (875)
.++.+.|++++|.+.++++. ..| ++.+|..++..+...|+.+. +.+.++++++++|+++.+. ++..+.+.+++
T Consensus 208 ~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~ 283 (291)
T 3mkr_A 208 ACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDR 283 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHH
Confidence 78888888888887777763 344 55677777777777777654 5677777778887776543 34455555555
Q ss_pred HHH
Q 002834 812 VVE 814 (875)
Q Consensus 812 A~~ 814 (875)
+..
T Consensus 284 ~~~ 286 (291)
T 3mkr_A 284 LVL 286 (291)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.72 E-value=1.4e-14 Score=159.65 Aligned_cols=363 Identities=10% Similarity=-0.013 Sum_probs=237.9
Q ss_pred HHHHHHHHHhc----CCChhHHHHHHHhcCC-CCcchHHHHHHHHhc----cCChhHHHHHHHHHHHCCCCCChhhHHHH
Q 002834 391 VGNALVSFYAK----CSDMEAAYRTFLMICR-RDLISWNSMLDAFSE----SGYNSQFLNLLNCMLMEGIRPDSITILTI 461 (875)
Q Consensus 391 ~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 461 (875)
....+...|.. .+++++|...|++... .+...+..|...|.. .++.++|+..|++..+.| +.
T Consensus 41 a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~------ 111 (490)
T 2xm6_A 41 AQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP------ 111 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH------
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH------
Confidence 44455555555 5666666666665432 344555555555555 566666666666655543 22
Q ss_pred HHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhhccCCCcccHHHHHHHhhc
Q 002834 462 IHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAK----CRNIKYAFNVFQSLLEKRNLVTFNPVISGYAN 537 (875)
Q Consensus 462 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 537 (875)
.....+...|.. .+++++|...|++.....+..++..+...|..
T Consensus 112 --------------------------------~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~ 159 (490)
T 2xm6_A 112 --------------------------------QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFE 159 (490)
T ss_dssp --------------------------------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------------------------HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Confidence 222334444444 45555555555555444344455555555544
Q ss_pred ----CCChHHHHHHHHhhhcCCC-ccHHHHHHHHHH----cCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhc----c
Q 002834 538 ----CGSADEAFMTFSRIYARDL-TPWNLMIRVYAE----NDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQ----M 604 (875)
Q Consensus 538 ----~~~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~----~ 604 (875)
.++.++|...|++..+.+. ..+..|...|.. .+++++|+..|++..+.| +...+..+...+.. .
T Consensus 160 g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~ 236 (490)
T 2xm6_A 160 GDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVT 236 (490)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 4556666666655544332 225555555555 566666666666665543 23333344444433 4
Q ss_pred cchHHHHHHHHHHHHhcCCCchHHHHHHHHhHh----cCCHHHHHHHhccCCC-CChhhHHHHHHHHHHc-----CChHH
Q 002834 605 ASVHLLRQCHGYVIRACFDGVRLNGALLHLYAK----CGSIFSASKIFQCHPQ-KDVVMLTAMIGGYAMH-----GMGKA 674 (875)
Q Consensus 605 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----g~~~~ 674 (875)
++.+.+...+....+.+ ++.....+..+|.. .++.++|...|++..+ .+..++..+...|... ++.++
T Consensus 237 ~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~ 314 (490)
T 2xm6_A 237 QDYTQSRVLFSQSAEQG--NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQ 314 (490)
T ss_dssp CCHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHH
T ss_pred CCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHH
Confidence 56666666666555443 33445556666666 8899999999988665 5667888888888887 89999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHhhcC---cHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhc----CCChHHHH
Q 002834 675 ALKVFSDMLELGVNPDHVVITAVLSACSHAG---LVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLAR----GGQISDAY 747 (875)
Q Consensus 675 A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~ 747 (875)
|+.+|++..+.| +...+..+...+...| +.++|.++|++..+ . .+...+..+..+|.. .+++++|.
T Consensus 315 A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~-~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~ 387 (490)
T 2xm6_A 315 AISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA-K---GEKAAQFNLGNALLQGKGVKKDEQQAA 387 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 999999999865 3455666666666656 88999999999987 2 356788888999988 89999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhcccCC---CCccHHHHHHHHHhc
Q 002834 748 SLVNRMPVEADCNVWGTLLGACRI----HHEVELGRVVANRLFEMEAD---NIGNYVVMSNLYAAD 806 (875)
Q Consensus 748 ~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~ 806 (875)
+++++.....++..+..|...+.. .+|.++|...++++++.+|+ ++.....|+.++...
T Consensus 388 ~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~~ 453 (490)
T 2xm6_A 388 IWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAKQ 453 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHhH
Confidence 999988644567888888888887 79999999999999999954 777777777776653
No 22
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.72 E-value=1.5e-15 Score=155.86 Aligned_cols=280 Identities=13% Similarity=0.121 Sum_probs=103.5
Q ss_pred HccCCchHHHHhhccCCCCCchhHHHHHHHHhcCCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHhhccCCcchhhhH
Q 002834 89 AKCGVIDDCYKLFGQVDNTDPVTWNILLSGFACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSACARLGGIFAGKSL 168 (875)
Q Consensus 89 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 168 (875)
-+.|++++|.+.+++++.| ..|..+..++.+.| ++++|++.|.+. +|..+|..++.++...|++++|...
T Consensus 14 ~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g-~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKG-MVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcC-CHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 3678899999999999665 48999999999999 999999999652 5777999999999999999999998
Q ss_pred HHHHHHhCCCCCcchhhHHHHHhHhcCChhHHHHHhccCCCCCeeeHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCChh
Q 002834 169 HAYVIKFGLERHTLVGNSLTSMYAKRGLVHDAYSVFDSIEDKDVVSWNAVISGLSENKVLGDAFRLFSWMLTEPIKPNYA 248 (875)
Q Consensus 169 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ 248 (875)
++..++. .+++.+.+.|+.+|.+.|+++++.++++. |+..+|+.+...|...|++++|..+|..+ +
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------~--- 149 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV------S--- 149 (449)
T ss_dssp ---------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT------T---
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh------h---
Confidence 8877774 56678899999999999999999888864 67779999999999999999999999875 1
Q ss_pred hHHhHHHHhccCCccccccchhHHHHHHHHhcccCCchhHhhhHHHHhHhcCChhHHHHHhhhcCCCCccchHHHHHHHH
Q 002834 249 TILNILPICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNALVSFYLRFGRTEEAELLFRRMKSRDLVSWNAIIAGYA 328 (875)
Q Consensus 249 t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 328 (875)
.|..|+.++.+.|++++|.+.++.+. ++.+|..++.+|+
T Consensus 150 ---------------------------------------n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv 188 (449)
T 1b89_A 150 ---------------------------------------NFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACV 188 (449)
T ss_dssp ---------------------------------------CHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHH
T ss_pred ---------------------------------------hHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHH
Confidence 26777888888888888888888873 7778888888888
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhcC--CChh
Q 002834 329 SNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKC--SDME 406 (875)
Q Consensus 329 ~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~ 406 (875)
..|+++.|......+. +.|+. ...++..|.+.|.++++..+++..+... +....+++-|.-+|++- +++.
T Consensus 189 ~~~ef~lA~~~~l~L~----~~ad~--l~~lv~~Yek~G~~eEai~lLe~aL~le--~ah~~~ftel~il~~ky~p~k~~ 260 (449)
T 1b89_A 189 DGKEFRLAQMCGLHIV----VHADE--LEELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTELAILYSKFKPQKMR 260 (449)
T ss_dssp HTTCHHHHHHTTTTTT----TCHHH--HHHHHHHHHHTTCHHHHHHHHHHHTTST--TCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HcCcHHHHHHHHHHHH----hCHhh--HHHHHHHHHHCCCHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHHhcCHHHHH
Confidence 8888888855544322 22332 3345555555666666655555554332 22222444444444432 3444
Q ss_pred HHHHHHHhcCC--------CCcchHHHHHHHHhccCChhHHHH
Q 002834 407 AAYRTFLMICR--------RDLISWNSMLDAFSESGYNSQFLN 441 (875)
Q Consensus 407 ~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~a~~ 441 (875)
+..+.|..-.. .+...|.-+.-.|.+.++++.|..
T Consensus 261 ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 261 EHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 44444432211 134455555555555555555554
No 23
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.71 E-value=1.3e-15 Score=167.77 Aligned_cols=150 Identities=13% Similarity=-0.013 Sum_probs=92.8
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChh----HHHHHHH-HhhcCCChHH
Q 002834 671 MGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPE----QYASLVD-LLARGGQISD 745 (875)
Q Consensus 671 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~-~~~~~g~~~~ 745 (875)
..++|+..+++..+.. +.+..++..+...+...|++++|.+.|+++.+ +.|+.. .+..+.. .+...|++++
T Consensus 315 ~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (472)
T 4g1t_A 315 LIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFS---KELTPVAKQLLHLRYGNFQLYQMKCEDK 390 (472)
T ss_dssp HHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHTSSCHHH
T ss_pred hHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHh---cCCCChHHHHHHHHHHHHHHHHCCCHHH
Confidence 4577888888887742 33455677788889999999999999998876 344432 2333333 2356789999
Q ss_pred HHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 002834 746 AYSLVNRMP-VEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTRDL 824 (875)
Q Consensus 746 A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 824 (875)
|++.+++.. ..|+...+.. ..+.++.++++.++.+|+++.+|..||.+|...|++++|++.+++..+.+.
T Consensus 391 Ai~~y~kal~i~~~~~~~~~---------~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 391 AIHHFIEGVKINQKSREKEK---------MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHHHHHHHHHSCCCCHHHHH---------HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred HHHHHHHHHhcCcccHHHHH---------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 999888764 6666543332 234566788899999999999999999999999999999999888766554
Q ss_pred cCCCceeEE
Q 002834 825 KKPAACSWI 833 (875)
Q Consensus 825 ~~~~~~s~~ 833 (875)
.-....+|+
T Consensus 462 ~~p~a~~~~ 470 (472)
T 4g1t_A 462 LIPSASSWN 470 (472)
T ss_dssp ---------
T ss_pred CCCcHhhcC
Confidence 433444443
No 24
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.70 E-value=3.4e-14 Score=158.29 Aligned_cols=404 Identities=10% Similarity=0.013 Sum_probs=251.6
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHhcCC---CCcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHh-h
Q 002834 391 VGNALVSFYAKCSDMEAAYRTFLMICR---RDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFC-T 466 (875)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~-~ 466 (875)
.+..++. +.+.|+++.|..+|+++.. .+...|..++..+.+.|+.++|..+|++.+... |+...|...+... .
T Consensus 15 ~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~ 91 (530)
T 2ooe_A 15 AWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRE 91 (530)
T ss_dssp HHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHH
Confidence 4444444 2445555555555555432 133445555555556666666666666655432 4444443333211 2
Q ss_pred ccCchhhHHH----HHHHHHHh-cCCCCCCchhHHHHHHHHHHh---------cCCHHHHHHHHHhhccCCCc---ccHH
Q 002834 467 TVLREGMVKE----THGYLIKT-GLLLGDTEHNIGNAILDAYAK---------CRNIKYAFNVFQSLLEKRNL---VTFN 529 (875)
Q Consensus 467 ~~~~~~~a~~----~~~~~~~~-~~~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~p~~---~~~~ 529 (875)
..++.+.+.+ +|+...+. |.. +.+..++...+....+ .|+++.|..+|++....|.. ..|.
T Consensus 92 ~~~~~~~a~~~~~~~~~~al~~~g~~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~ 169 (530)
T 2ooe_A 92 TKGKLPSYKEKMAQAYDFALDKIGME--IMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWR 169 (530)
T ss_dssp HTTTSTTHHHHHHHHHHHHHHHTTTS--TTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHH
T ss_pred HccchhhHHHHHHHHHHHHHHHCCCC--cccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 2344444333 44444332 321 2344555555555443 67888888888888776532 1222
Q ss_pred HHHHHhhcCCChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCchHHHHHHHHHH------HCC---CCCCc--------c
Q 002834 530 PVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQ------AQG---MKPDA--------V 592 (875)
Q Consensus 530 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~------~~g---~~p~~--------~ 592 (875)
.........+ ...+..++. .+.+++..|..++.++. +.. +.|+. .
T Consensus 170 ~~~~~e~~~~-~~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~ 231 (530)
T 2ooe_A 170 DYNKYEEGIN-IHLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVD 231 (530)
T ss_dssp HHHHHHHHHC-HHHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHH
T ss_pred HHHHHHHhhc-hhHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHH
Confidence 2111100000 001111111 12233445555554421 111 22321 1
Q ss_pred hHhcHHHHhhc----ccch----HHHHHHHHHHHHhcCCCchHHHHHHHHhHh-------cCCHH-------HHHHHhcc
Q 002834 593 TIMSLLPVCSQ----MASV----HLLRQCHGYVIRACFDGVRLNGALLHLYAK-------CGSIF-------SASKIFQC 650 (875)
Q Consensus 593 ~~~~ll~a~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~~ 650 (875)
.+...+..... .++. ..+..+++.+....+.++.++..++..+.+ .|+++ +|..+|++
T Consensus 232 ~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~ 311 (530)
T 2ooe_A 232 MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYER 311 (530)
T ss_dssp HHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHH
Confidence 22222211111 1122 366678888888887788999999888876 68877 89999998
Q ss_pred CCC---C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCC
Q 002834 651 HPQ---K-DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDH--VVITAVLSACSHAGLVDEGLEIFRSIEKVQGIK 724 (875)
Q Consensus 651 ~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 724 (875)
..+ | +...|..++..+.+.|++++|..+|+++.+ ..|+. ..|...+..+.+.|+.++|.++|+++.+ ..
T Consensus 312 Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~---~~ 386 (530)
T 2ooe_A 312 AISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DA 386 (530)
T ss_dssp HTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---CT
T ss_pred HHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh---cc
Confidence 663 3 577899999999999999999999999998 46653 4788888888899999999999999976 34
Q ss_pred CC-hhHHHHHHHH-hhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCc----cH
Q 002834 725 PT-PEQYASLVDL-LARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIG----NY 796 (875)
Q Consensus 725 p~-~~~~~~l~~~-~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~~ 796 (875)
|. ...|...+.. +...|+.++|..++++.. ..| ++..|..++......|+.+.|...++++++..|.++. .|
T Consensus 387 ~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw 466 (530)
T 2ooe_A 387 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW 466 (530)
T ss_dssp TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHH
T ss_pred CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHH
Confidence 44 2333333222 336899999999999874 344 5789999999999999999999999999999887765 66
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHhC
Q 002834 797 VVMSNLYAADARWDGVVEIRKLMKTR 822 (875)
Q Consensus 797 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 822 (875)
..++......|+.+.+.++.+++.+.
T Consensus 467 ~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 467 ARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 67778888899999999998887654
No 25
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.69 E-value=5.5e-16 Score=158.99 Aligned_cols=282 Identities=11% Similarity=0.042 Sum_probs=119.3
Q ss_pred hcCChhHHHHHhhhcCCCCccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChhhHHHHHH
Q 002834 298 RFGRTEEAELLFRRMKSRDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIHG 377 (875)
Q Consensus 298 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~ 377 (875)
+.|++++|.++++++..|+ +|..+..++.+.|++++|++.|.+ .+|..+|..++.++...|+++++...+.
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik-------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc-------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 6788999999999996664 999999999999999999999965 2677799999999999999999999777
Q ss_pred HHHhcCCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhh
Q 002834 378 YFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSIT 457 (875)
Q Consensus 378 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 457 (875)
...+. .++.. +.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..
T Consensus 86 ~ark~--~~~~~-i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n 150 (449)
T 1b89_A 86 MARKK--ARESY-VETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SN 150 (449)
T ss_dssp --------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TC
T ss_pred HHHHh--Cccch-hHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hh
Confidence 76664 22333 778889999999999988877753 66678888888888888888888888765 12
Q ss_pred HHHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcccHHHHHHHhhc
Q 002834 458 ILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYAN 537 (875)
Q Consensus 458 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 537 (875)
|..++.++.+.|++++|.+.+.++ . ++.+|..++.+|..
T Consensus 151 --------------------------------------~~~LA~~L~~Lg~yq~AVea~~KA--~-~~~~Wk~v~~aCv~ 189 (449)
T 1b89_A 151 --------------------------------------FGRLASTLVHLGEYQAAVDGARKA--N-STRTWKEVCFACVD 189 (449)
T ss_dssp --------------------------------------HHHHHHHHHTTTCHHHHHHHHHHH--T-CHHHHHHHHHHHHH
T ss_pred --------------------------------------HHHHHHHHHHhccHHHHHHHHHHc--C-CchhHHHHHHHHHH
Confidence 377888888999999999999888 2 78899999999999
Q ss_pred CCChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHH
Q 002834 538 CGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYV 617 (875)
Q Consensus 538 ~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~ 617 (875)
.|+++.|......+. ..+.....++..|.+.|++++|+.+++...... +-....|+.+--+++
T Consensus 190 ~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~--------------- 252 (449)
T 1b89_A 190 GKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS--------------- 252 (449)
T ss_dssp TTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHH---------------
T ss_pred cCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHH---------------
Confidence 999999966665533 333336678888899999999988888875332 111122222221111
Q ss_pred HHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC--------CChhhHHHHHHHHHHcCChHHHHHH
Q 002834 618 IRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ--------KDVVMLTAMIGGYAMHGMGKAALKV 678 (875)
Q Consensus 618 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~ 678 (875)
-.+-+++.+.++.|..-.. .+...|..++..|...++++.|..+
T Consensus 253 -----------------ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 253 -----------------KFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp -----------------TTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred -----------------hcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 1234556666666664443 2456788888888888888888763
No 26
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.69 E-value=6e-14 Score=154.59 Aligned_cols=316 Identities=11% Similarity=-0.017 Sum_probs=262.2
Q ss_pred hHHHHHHHHHHh----cCCHHHHHHHHHhhccCCCcccHHHHHHHhhc----CCChHHHHHHHHhhhcCCCc-cHHHHHH
Q 002834 494 NIGNAILDAYAK----CRNIKYAFNVFQSLLEKRNLVTFNPVISGYAN----CGSADEAFMTFSRIYARDLT-PWNLMIR 564 (875)
Q Consensus 494 ~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~-~~~~l~~ 564 (875)
..+..+...|.. .+++++|...|++.....+...+..+...|.. .+++++|...|++....+.. .+..|..
T Consensus 76 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~ 155 (490)
T 2xm6_A 76 PAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGD 155 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344566777777 89999999999998877678888888888887 88999999999998776543 3888888
Q ss_pred HHHH----cCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhc----ccchHHHHHHHHHHHHhcCCCchHHHHHHHHhH
Q 002834 565 VYAE----NDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQ----MASVHLLRQCHGYVIRACFDGVRLNGALLHLYA 636 (875)
Q Consensus 565 ~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 636 (875)
.|.. .+++++|+..|++..+.| +...+..+-..+.. .++.+.|...+....+.+ ++.....+..+|.
T Consensus 156 ~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~ 230 (490)
T 2xm6_A 156 AYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG--DELGQLHLADMYY 230 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHH
Confidence 8887 789999999999998875 55666666666766 789999999999888765 5567777888887
Q ss_pred h----cCCHHHHHHHhccCCC-CChhhHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhc---
Q 002834 637 K----CGSIFSASKIFQCHPQ-KDVVMLTAMIGGYAM----HGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHA--- 704 (875)
Q Consensus 637 ~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~--- 704 (875)
. .+++++|...|++..+ .+..++..+...|.. .++.++|+++|++..+.| +...+..+...+...
T Consensus 231 ~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g 307 (490)
T 2xm6_A 231 FGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEG 307 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTT
T ss_pred cCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCC
Confidence 6 8999999999998665 567788888888888 899999999999998764 445666667777776
Q ss_pred --CcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCh
Q 002834 705 --GLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGG---QISDAYSLVNRMPVEADCNVWGTLLGACRI----HHEV 775 (875)
Q Consensus 705 --g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~ 775 (875)
++.++|.++|++..+ . -+...+..+..+|...| ++++|++++++.....++..+..|...+.. .+|.
T Consensus 308 ~~~~~~~A~~~~~~a~~-~---~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~ 383 (490)
T 2xm6_A 308 VAKNREQAISWYTKSAE-Q---GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDE 383 (490)
T ss_dssp BCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CcCCHHHHHHHHHHHHh-c---CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCH
Confidence 899999999999977 2 24567778888888767 789999999988645678889999999988 7999
Q ss_pred hHHHHHHHHHhcccCCCCccHHHHHHHHHh----cCCchhHHHHHHHHHhCC
Q 002834 776 ELGRVVANRLFEMEADNIGNYVVMSNLYAA----DARWDGVVEIRKLMKTRD 823 (875)
Q Consensus 776 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 823 (875)
++|...++++.+.. ++..+..|+.+|.. .+++++|.+.+++..+.+
T Consensus 384 ~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 384 QQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 99999999998864 67889999999999 899999999988887755
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.69 E-value=6.6e-16 Score=163.58 Aligned_cols=257 Identities=10% Similarity=0.010 Sum_probs=182.6
Q ss_pred CcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCcc---HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHH
Q 002834 524 NLVTFNPVISGYANCGSADEAFMTFSRIYARDLTP---WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPV 600 (875)
Q Consensus 524 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a 600 (875)
+...|..+...+.+.|++++|...|+++...++.. |..+..+|...|++++|+..|+++.+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------------- 128 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLEL--------------- 128 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---------------
Confidence 34456666777766666666666666664433322 666666666666666666666665543
Q ss_pred hhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC--C-----------ChhhHHHHHHHHH
Q 002834 601 CSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ--K-----------DVVMLTAMIGGYA 667 (875)
Q Consensus 601 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-----------~~~~~~~li~~~~ 667 (875)
.+.+...+..++..|.+.|++++|...|+++.+ | ....+..+...+.
T Consensus 129 --------------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~ 188 (365)
T 4eqf_A 129 --------------------QPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPV 188 (365)
T ss_dssp --------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------
T ss_pred --------------------CCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHh
Confidence 333344445555566666666666666655443 1 1223445578888
Q ss_pred HcCChHHHHHHHHHHHHCCCC-CChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCC-ChhHHHHHHHHhhcCCChHH
Q 002834 668 MHGMGKAALKVFSDMLELGVN-PDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKP-TPEQYASLVDLLARGGQISD 745 (875)
Q Consensus 668 ~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 745 (875)
..|++++|+..|+++.+.... ++..++..+...+...|++++|.++|+++.+ ..| +...|..++.+|...|++++
T Consensus 189 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~ 265 (365)
T 4eqf_A 189 DSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALT---VRPEDYSLWNRLGATLANGDRSEE 265 (365)
T ss_dssp CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred hhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999985321 1577888888899999999999999999987 344 46689999999999999999
Q ss_pred HHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCC------------CccHHHHHHHHHhcCCchh
Q 002834 746 AYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADN------------IGNYVVMSNLYAADARWDG 811 (875)
Q Consensus 746 A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------------~~~~~~l~~~~~~~g~~~~ 811 (875)
|++.++++. ..| +..+|..+..++...|+++.|...+++++++.|++ ...+..++.++...|+.+.
T Consensus 266 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 345 (365)
T 4eqf_A 266 AVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPEL 345 (365)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHH
Confidence 999999874 445 57889999999999999999999999999999873 5678899999999999999
Q ss_pred HHHHHHH
Q 002834 812 VVEIRKL 818 (875)
Q Consensus 812 A~~~~~~ 818 (875)
+.++.++
T Consensus 346 a~~~~~~ 352 (365)
T 4eqf_A 346 FQAANLG 352 (365)
T ss_dssp HHHHHTT
T ss_pred HHHHHHh
Confidence 9887653
No 28
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.68 E-value=7.3e-16 Score=163.53 Aligned_cols=284 Identities=13% Similarity=0.032 Sum_probs=217.1
Q ss_pred HHcCCchHHHH-HHHHHHHCCC-CC--CcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHH
Q 002834 567 AENDFPNQALS-LFLKLQAQGM-KP--DAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIF 642 (875)
Q Consensus 567 ~~~~~~~~A~~-~~~~m~~~g~-~p--~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 642 (875)
.-.|++++|+. .|++...... .| +...+..+...+...|+++.|...+..+.+..+.+...+..+...|.+.|+++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHH
Confidence 44577788877 7765443211 11 34567778888999999999999999999998888899999999999999999
Q ss_pred HHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhh-HHH---------------HHHHHhh
Q 002834 643 SASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVV-ITA---------------VLSACSH 703 (875)
Q Consensus 643 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~---------------ll~a~~~ 703 (875)
+|...|+++.+ .+..+|..+...|...|++++|++.++++.+. .|+... +.. .+..+..
T Consensus 116 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 116 LAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY--TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 99999997654 56789999999999999999999999999985 344322 211 2444448
Q ss_pred cCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHH
Q 002834 704 AGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVV 781 (875)
Q Consensus 704 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 781 (875)
.|++++|..+|+++.+.....++...+..++.+|.+.|++++|++.++++. ..| +..+|..+...+...|+++.|+..
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998842222246789999999999999999999999874 344 568899999999999999999999
Q ss_pred HHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhCCCcCCCceeEEEeCCEEeEEecCCCCCCChHHHHHHHHH
Q 002834 782 ANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTRDLKKPAACSWIEVERKNNAFMAGDYSHPRRDMIYWVLSI 861 (875)
Q Consensus 782 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 861 (875)
++++++++|+++..+..++.+|...|++++|.+.++....... ..... ....+|....++..+..
T Consensus 274 ~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~--~~~~~-------------~~~~~~~~~~~~~~l~~ 338 (368)
T 1fch_A 274 YRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR--KSRGP-------------RGEGGAMSENIWSTLRL 338 (368)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--TC-------------------CCCCCHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCCCc-------------cccccchhhHHHHHHHH
Confidence 9999999999999999999999999999999998887765321 11100 01135666777777776
Q ss_pred HHHHHH
Q 002834 862 LDEQIK 867 (875)
Q Consensus 862 l~~~~~ 867 (875)
+...+.
T Consensus 339 ~~~~~g 344 (368)
T 1fch_A 339 ALSMLG 344 (368)
T ss_dssp HHHHHT
T ss_pred HHHHhC
Confidence 665554
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.66 E-value=1.6e-15 Score=157.90 Aligned_cols=256 Identities=13% Similarity=0.035 Sum_probs=183.1
Q ss_pred CcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCcc---HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHH
Q 002834 524 NLVTFNPVISGYANCGSADEAFMTFSRIYARDLTP---WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPV 600 (875)
Q Consensus 524 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a 600 (875)
+...+..+...+...|++++|..+|+++...++.. +..+..+|...|++++|...|+++.+.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------------- 84 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------------- 84 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---------------
Confidence 34455666666666666666666666664433322 555666666666666666666666553
Q ss_pred hhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC--C-ChhhHHHH--------------H
Q 002834 601 CSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ--K-DVVMLTAM--------------I 663 (875)
Q Consensus 601 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l--------------i 663 (875)
.+.+...+..+...|...|++++|.+.|+++.+ | +...+..+ .
T Consensus 85 --------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (327)
T 3cv0_A 85 --------------------DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSE 144 (327)
T ss_dssp --------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC-------------------
T ss_pred --------------------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHH
Confidence 222333444444555555555555555554332 1 11122222 2
Q ss_pred H-HHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCC
Q 002834 664 G-GYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGG 741 (875)
Q Consensus 664 ~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 741 (875)
. .+...|++++|+..++++.+.. +.+...+..+...+...|++++|.++++++.+. .|+ ...+..++.++.+.|
T Consensus 145 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~ 220 (327)
T 3cv0_A 145 DFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGN 220 (327)
T ss_dssp -CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcC
Confidence 2 3667788999999999998853 446677888888999999999999999999873 444 568899999999999
Q ss_pred ChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCC------------CCccHHHHHHHHHhcC
Q 002834 742 QISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEAD------------NIGNYVVMSNLYAADA 807 (875)
Q Consensus 742 ~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g 807 (875)
++++|.+.++++. ..| +...|..+..++...|+++.|...++++++..|+ ++..+..++.+|...|
T Consensus 221 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 300 (327)
T 3cv0_A 221 RPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMN 300 (327)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcC
Confidence 9999999998874 334 5688999999999999999999999999999999 7888999999999999
Q ss_pred CchhHHHHHHH
Q 002834 808 RWDGVVEIRKL 818 (875)
Q Consensus 808 ~~~~A~~~~~~ 818 (875)
++++|.++++.
T Consensus 301 ~~~~A~~~~~~ 311 (327)
T 3cv0_A 301 RPDLVELTYAQ 311 (327)
T ss_dssp CHHHHHHHTTC
T ss_pred CHHHHHHHHHH
Confidence 99999998653
No 30
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.66 E-value=1.9e-15 Score=160.08 Aligned_cols=218 Identities=13% Similarity=0.057 Sum_probs=171.4
Q ss_pred hcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHH
Q 002834 602 SQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKV 678 (875)
Q Consensus 602 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 678 (875)
...|+++.|...++.+.+..+.+...+..+...|.+.|++++|...|+++.+ .+..+|..+...|...|++++|+..
T Consensus 76 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 155 (365)
T 4eqf_A 76 LKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEA 155 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHH
Confidence 3333333333333333333333555667888899999999999999998764 4678999999999999999999999
Q ss_pred HHHHHHCCCCCChh-h----------HHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHH
Q 002834 679 FSDMLELGVNPDHV-V----------ITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAY 747 (875)
Q Consensus 679 ~~~m~~~g~~p~~~-~----------~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 747 (875)
|+++.+. .|+.. . +..+...+...|++++|.++|+++.+.....++...+..++.+|.+.|++++|+
T Consensus 156 ~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~ 233 (365)
T 4eqf_A 156 LKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAI 233 (365)
T ss_dssp HHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHH
Confidence 9999984 44422 2 233467889999999999999999884322225678999999999999999999
Q ss_pred HHHHhCC-C-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 748 SLVNRMP-V-EADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 748 ~~~~~~~-~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
+.++++. . +.+..+|..+..++...|+++.|+..++++++++|+++..+..++.+|...|++++|.+.++...+
T Consensus 234 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 234 DAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALS 309 (365)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999984 3 446789999999999999999999999999999999999999999999999999999998887765
No 31
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.66 E-value=1.3e-13 Score=153.53 Aligned_cols=399 Identities=12% Similarity=0.053 Sum_probs=234.6
Q ss_pred chhHhhhHHHHhHhcCChhHHHHHhhhcCC--C-CccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHH
Q 002834 285 DVSVCNALVSFYLRFGRTEEAELLFRRMKS--R-DLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLP 361 (875)
Q Consensus 285 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~ 361 (875)
|..+|..++. +.+.|+++.|+.+|+.+.+ | +...|..++..+.+.|++++|..+|++..... |+...|...+.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~---p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV---LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC---CCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CChHHHHHHHH
Confidence 7888988888 4788999999999999875 3 45578889999999999999999999998853 77766666654
Q ss_pred HH-hccCChhhHHH----HHHHHHhc-CCCCchhhHHHHHHHHHhc---------CCChhHHHHHHHhcCC-CCc---ch
Q 002834 362 AC-AYLKNLKVGKE----IHGYFLRH-PYLEEDAAVGNALVSFYAK---------CSDMEAAYRTFLMICR-RDL---IS 422 (875)
Q Consensus 362 ~~-~~~~~~~~a~~----~~~~~~~~-~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~-~~~---~~ 422 (875)
.. ...|+.+.+++ +++..+.. |..++...+|...+....+ .|+++.|..+|++... |.. ..
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 32 34577776665 66665543 5555555577777776654 6788899999988754 221 22
Q ss_pred HHHHHHH---H----------hccCChhHHHHHHHHHH------HCC---CCCChh-hHHHHHHHhhccCchhhHHHHHH
Q 002834 423 WNSMLDA---F----------SESGYNSQFLNLLNCML------MEG---IRPDSI-TILTIIHFCTTVLREGMVKETHG 479 (875)
Q Consensus 423 ~~~li~~---~----------~~~g~~~~a~~~~~~m~------~~g---~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~ 479 (875)
|...... + ...+++..|..+++++. +.. +.|+.. .+..
T Consensus 168 ~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~------------------- 228 (530)
T 2ooe_A 168 WRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQ------------------- 228 (530)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHH-------------------
T ss_pred HHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHH-------------------
Confidence 3222111 0 12334555555555422 111 122210 0000
Q ss_pred HHHHhcCCCCCCchhHHHHHHHHHHhc----CCH----HHHHHHHHhhccC-C-CcccHHHHHHHhhc-------CCChH
Q 002834 480 YLIKTGLLLGDTEHNIGNAILDAYAKC----RNI----KYAFNVFQSLLEK-R-NLVTFNPVISGYAN-------CGSAD 542 (875)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~----~~A~~~~~~~~~~-p-~~~~~~~l~~~~~~-------~~~~~ 542 (875)
....+...+...... ++. .++..+|++.... | +...|..++..+.+ .|+++
T Consensus 229 ------------~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~ 296 (530)
T 2ooe_A 229 ------------QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMN 296 (530)
T ss_dssp ------------HHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCH
T ss_pred ------------HHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchh
Confidence 011222222111110 111 2344444433332 2 33344444444432 34443
Q ss_pred -------HHHHHHHhhhc-CCCcc---HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCc--chHhcHHHHhhcccchHH
Q 002834 543 -------EAFMTFSRIYA-RDLTP---WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDA--VTIMSLLPVCSQMASVHL 609 (875)
Q Consensus 543 -------~A~~~~~~~~~-~~~~~---~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~a~~~~~~~~~ 609 (875)
+|..++++... ..+.. |..++..+.+.|++++|..+|+++.+. .|+. ..|......+.+.|+.+.
T Consensus 297 ~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~ 374 (530)
T 2ooe_A 297 NAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKS 374 (530)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHH
Confidence 45555555443 22221 445555555666666666666665552 3332 244455555555566666
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHH-hHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 002834 610 LRQCHGYVIRACFDGVRLNGALLHL-YAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLEL 685 (875)
Q Consensus 610 a~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 685 (875)
|..++..+.+..+.+...+...+.+ +...|+.++|..+|++..+ .+...|..++..+.+.|+.++|..+|++....
T Consensus 375 A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 375 GRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 6666666655443333333222222 3357888888888887654 35678888888888899999999999998886
Q ss_pred C-CCCC--hhhHHHHHHHHhhcCcHHHHHHHHHHhHHH
Q 002834 686 G-VNPD--HVVITAVLSACSHAGLVDEGLEIFRSIEKV 720 (875)
Q Consensus 686 g-~~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 720 (875)
+ ..|+ ...|...+......|+.+.+.++++++.+.
T Consensus 455 ~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 455 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp CCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3 2332 336766777777889999999999988774
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.62 E-value=1.8e-14 Score=145.67 Aligned_cols=236 Identities=14% Similarity=0.128 Sum_probs=153.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhccCCCcccHHHHHHHhhcCCChHHHHHHHHhhhcCC-----CccHHHHHHHHHHcCC
Q 002834 497 NAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFMTFSRIYARD-----LTPWNLMIRVYAENDF 571 (875)
Q Consensus 497 ~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~~~~ 571 (875)
..+..+|...|+++.|+..++.. ..|+..++..+...+...++.++|++.++++...+ +..+..+..+|.+.|+
T Consensus 38 ~~l~r~yi~~g~~~~al~~~~~~-~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~ 116 (291)
T 3mkr_A 38 VFLYRAYLAQRKYGVVLDEIKPS-SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQN 116 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHSCTT-SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCHHHHHHHhccc-CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCC
Confidence 34456666677777776655442 22355566666666667777777777777664322 1125566667777777
Q ss_pred chHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccC
Q 002834 572 PNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCH 651 (875)
Q Consensus 572 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 651 (875)
+++|++.+++ |+ +...+..++..|.+.|++++|.+.|+++
T Consensus 117 ~~~Al~~l~~-------~~---------------------------------~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 117 PDAALRTLHQ-------GD---------------------------------SLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHTT-------CC---------------------------------SHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhC-------CC---------------------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7777777765 21 1122234445555666666666666655
Q ss_pred CC--CChhh---HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC
Q 002834 652 PQ--KDVVM---LTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT 726 (875)
Q Consensus 652 ~~--~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 726 (875)
.+ |+... ...++..+...|++++|+.+|+++.+. .+.+...++.+..++.+.|++++|.+.|+++.+ ..|+
T Consensus 157 ~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~---~~p~ 232 (291)
T 3mkr_A 157 QDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD---KDSG 232 (291)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTT
T ss_pred HhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCC
Confidence 43 33211 122333344558999999999999987 466778888899999999999999999999987 4564
Q ss_pred -hhHHHHHHHHhhcCCChHH-HHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHH
Q 002834 727 -PEQYASLVDLLARGGQISD-AYSLVNRMP-VEADCNVWGTLLGACRIHHEVELGRV 780 (875)
Q Consensus 727 -~~~~~~l~~~~~~~g~~~~-A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~ 780 (875)
..++..++.++...|+.++ +.++++++. ..|+..... ....+.+.++++..
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~---d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK---EYRAKENDFDRLVL 286 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH---HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH---HHHHHHHHHHHHHH
Confidence 5589999999999999976 568888774 566554322 22334445555443
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.62 E-value=4.1e-14 Score=147.09 Aligned_cols=261 Identities=11% Similarity=0.032 Sum_probs=164.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhhccC-C-CcccHHHHHHHhhcCCChHHHHHHHHhhhcCCCcc---HHHHHHHHHH
Q 002834 494 NIGNAILDAYAKCRNIKYAFNVFQSLLEK-R-NLVTFNPVISGYANCGSADEAFMTFSRIYARDLTP---WNLMIRVYAE 568 (875)
Q Consensus 494 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~ 568 (875)
..+..+...+...|++++|..+|+++... | +..+|..+...+...|++++|...++++...++.. +..+...|..
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 101 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence 34456667778888888888888877653 3 55677778888888888888888888876554433 7788888899
Q ss_pred cCCchHHHHHHHHHHHCCCCCCcchHhcHH--------------H--HhhcccchHHHHHHHHHHHHhcCCCchHHHHHH
Q 002834 569 NDFPNQALSLFLKLQAQGMKPDAVTIMSLL--------------P--VCSQMASVHLLRQCHGYVIRACFDGVRLNGALL 632 (875)
Q Consensus 569 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll--------------~--a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 632 (875)
.|++++|+..++++.+. .|+.......+ . .+...|+.+.|...+..+.+..+.
T Consensus 102 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--------- 170 (327)
T 3cv0_A 102 EHNANAALASLRAWLLS--QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN--------- 170 (327)
T ss_dssp TTCHHHHHHHHHHHHHT--STTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT---------
T ss_pred cCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC---------
Confidence 99999999999998875 33332222111 1 134444444444444444444333
Q ss_pred HHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHH
Q 002834 633 HLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLE 712 (875)
Q Consensus 633 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~ 712 (875)
+...|..+...|...|++++|+..++++.+.. +.+...+..+...+...|++++|.+
T Consensus 171 ----------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 227 (327)
T 3cv0_A 171 ----------------------DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALD 227 (327)
T ss_dssp ----------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ----------------------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 34455556666666666666666666666531 2234455555666666666666666
Q ss_pred HHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCC-------------HHHHHHHHHHHHhcCChhH
Q 002834 713 IFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEAD-------------CNVWGTLLGACRIHHEVEL 777 (875)
Q Consensus 713 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-------------~~~~~~l~~~~~~~~~~~~ 777 (875)
.|+++.+ ..|+ ...+..++.++.+.|++++|.+.++++. ..|+ ...|..+..++...|+.+.
T Consensus 228 ~~~~a~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 304 (327)
T 3cv0_A 228 AYNRALD---INPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDL 304 (327)
T ss_dssp HHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHH---cCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHH
Confidence 6666655 2232 4456666666666666666666666552 2222 4566666667777777777
Q ss_pred HHHHHHHHhcccCC
Q 002834 778 GRVVANRLFEMEAD 791 (875)
Q Consensus 778 a~~~~~~~~~~~p~ 791 (875)
|...++++++..|+
T Consensus 305 A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 305 VELTYAQNVEPFAK 318 (327)
T ss_dssp HHHHTTCCSHHHHH
T ss_pred HHHHHHHHHHhcch
Confidence 77777766665544
No 34
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.60 E-value=1.5e-14 Score=139.60 Aligned_cols=191 Identities=12% Similarity=0.058 Sum_probs=156.2
Q ss_pred CchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHH
Q 002834 624 GVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPD-HVVITAVLS 699 (875)
Q Consensus 624 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~ 699 (875)
+...+..+...+.+.|++++|...|++..+ .+...|..+...+...|++++|+..|++..+. .|+ ...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHH
Confidence 556677788889999999999999997654 46678999999999999999999999999985 454 566777888
Q ss_pred HHhhc-----------CcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCCHHHHHHHH
Q 002834 700 ACSHA-----------GLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEADCNVWGTLL 766 (875)
Q Consensus 700 a~~~~-----------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~ 766 (875)
++... |++++|...|++..+ +.|+ ...+..++.+|...|++++|++.+++.. ...++..|..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 89999 999999999999987 5665 4588999999999999999999999874 227788999999
Q ss_pred HHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHH
Q 002834 767 GACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLM 819 (875)
Q Consensus 767 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 819 (875)
.++...|+++.|+..++++++++|+++..+..++.+|...|++++|++.++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988654
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.59 E-value=2.7e-16 Score=173.89 Aligned_cols=151 Identities=11% Similarity=0.017 Sum_probs=129.2
Q ss_pred CCCCchhhhHHHHHHHccCCchHHHHhhccC-------CCCCchhHHHHHHHHhcCCCChhHHHHHHHHhHhcCCCCCCc
Q 002834 74 HISCQAVSKALLNLYAKCGVIDDCYKLFGQV-------DNTDPVTWNILLSGFACSHVDDARVMNLFYNMHVRDQPKPNS 146 (875)
Q Consensus 74 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 146 (875)
......+||+||++|++.|++++|..+|++| ..||+++||+||.+|++.| +.++|.++|++|.+.| +.||.
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G-~~~eA~~Lf~eM~~~G-~~PDv 200 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQG-AFKELVYVLFMVKDAG-LTPDL 200 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHTT-CCCCH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCC-CHHHHHHHHHHHHHcC-CCCcH
Confidence 3344568999999999999999999999775 3689999999999999999 9999999999999999 99999
Q ss_pred chHHHHHHHhhccCCc-chhhhHHHHHHHhCCCCCcchhhHHHHHhHhcCChhHHHHHhccCCC-----CCeeeHHHHHH
Q 002834 147 VTVAIVLSACARLGGI-FAGKSLHAYVIKFGLERHTLVGNSLTSMYAKRGLVHDAYSVFDSIED-----KDVVSWNAVIS 220 (875)
Q Consensus 147 ~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~ 220 (875)
.||++||.++++.|+. +.|.+++++|.+.|+.||..+|++++....+.+-++.+.+++..+.- +.+.+.+.|..
T Consensus 201 vTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 201 LSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHH
Confidence 9999999999999985 78899999999999999999999999988887666666555555432 23455666677
Q ss_pred HHHcCC
Q 002834 221 GLSENK 226 (875)
Q Consensus 221 ~~~~~g 226 (875)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 777665
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.59 E-value=1e-12 Score=144.45 Aligned_cols=148 Identities=10% Similarity=-0.034 Sum_probs=80.8
Q ss_pred HHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh--hHHHHHH-HHhhcCcHHHHHHHH
Q 002834 641 IFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHV--VITAVLS-ACSHAGLVDEGLEIF 714 (875)
Q Consensus 641 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~-a~~~~g~~~~a~~~~ 714 (875)
.+.|...|++..+ .+..+|..+...|...|++++|+..|++..+....|... .+..+.. ...+.|+.++|++.|
T Consensus 316 ~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y 395 (472)
T 4g1t_A 316 IGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHF 395 (472)
T ss_dssp HHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3455555554332 345678888888999999999999999988854333221 2223332 345788999999999
Q ss_pred HHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCC
Q 002834 715 RSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP--VEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADN 792 (875)
Q Consensus 715 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 792 (875)
++..+ +.|+........ ..+.++++... .+.++.+|..+..++...|++++|++.++++++++|.+
T Consensus 396 ~kal~---i~~~~~~~~~~~---------~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~ 463 (472)
T 4g1t_A 396 IEGVK---INQKSREKEKMK---------DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLI 463 (472)
T ss_dssp HHHHH---SCCCCHHHHHHH---------HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------
T ss_pred HHHHh---cCcccHHHHHHH---------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 99877 677654333222 22333333331 23466889999999999999999999999999999999
Q ss_pred CccHHHHH
Q 002834 793 IGNYVVMS 800 (875)
Q Consensus 793 ~~~~~~l~ 800 (875)
|.++..+|
T Consensus 464 p~a~~~~G 471 (472)
T 4g1t_A 464 PSASSWNG 471 (472)
T ss_dssp --------
T ss_pred CcHhhcCC
Confidence 98776655
No 37
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.56 E-value=2e-15 Score=167.00 Aligned_cols=125 Identities=16% Similarity=0.143 Sum_probs=109.6
Q ss_pred CchHHHHHHHHhHhcCCHHHHHHHhccCC-------CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHH
Q 002834 624 GVRLNGALLHLYAKCGSIFSASKIFQCHP-------QKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITA 696 (875)
Q Consensus 624 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 696 (875)
...++++|+++|+++|++++|.++|++|. .||+++||+||.+|++.|++++|.++|++|.+.|+.||.+||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 45578999999999999999999996643 48999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCc-HHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHH
Q 002834 697 VLSACSHAGL-VDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSL 749 (875)
Q Consensus 697 ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 749 (875)
+|.++++.|+ .++|.++|++|.+ .|+.||..+|++++....+.+-++...++
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~-kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHH-HTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHH-cCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 9999999997 5789999999988 79999999999998776665544444443
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.55 E-value=1.7e-13 Score=136.78 Aligned_cols=215 Identities=11% Similarity=0.036 Sum_probs=170.9
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhc
Q 002834 559 WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKC 638 (875)
Q Consensus 559 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 638 (875)
|..+...+...|++++|+..|++..+.. .+...+..+. ..|...
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~----------------------------------~~~~~~ 51 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRA----------------------------------AAEYEK 51 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHH----------------------------------HHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHH----------------------------------HHHHHc
Confidence 6677788888888888888888877665 4444444444 445555
Q ss_pred CCHHHHHHHhccCCC--C----C----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHH
Q 002834 639 GSIFSASKIFQCHPQ--K----D----VVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVD 708 (875)
Q Consensus 639 g~~~~A~~~~~~~~~--~----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~ 708 (875)
|++++|...|++..+ | + ..+|..+...|...|++++|+..|++..+. .|+. ..+...|+++
T Consensus 52 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~ 122 (258)
T 3uq3_A 52 GEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAE 122 (258)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHH
Confidence 555555555554432 1 1 467888889999999999999999999884 5553 3466778899
Q ss_pred HHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 002834 709 EGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP--VEADCNVWGTLLGACRIHHEVELGRVVANRL 785 (875)
Q Consensus 709 ~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 785 (875)
+|.+.++++.. ..|+ ...+..++.++...|++++|.+.++++. .+.+..+|..+..++...|+++.|+..++++
T Consensus 123 ~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 199 (258)
T 3uq3_A 123 KELKKAEAEAY---VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKA 199 (258)
T ss_dssp HHHHHHHHHHH---CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999877 4555 4488889999999999999999999884 3446788999999999999999999999999
Q ss_pred hcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 786 FEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 786 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
++.+|+++..+..++.+|...|++++|.+.++...+
T Consensus 200 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 200 IEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999998877654
No 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.53 E-value=1.9e-13 Score=137.96 Aligned_cols=239 Identities=8% Similarity=-0.085 Sum_probs=171.6
Q ss_pred hhcCCChHHHHHHHHhhhcCC-------CccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccch
Q 002834 535 YANCGSADEAFMTFSRIYARD-------LTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASV 607 (875)
Q Consensus 535 ~~~~~~~~~A~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~ 607 (875)
....+++++|+..++++.... ...|..+...|...|++++|+..|+++.+
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~----------------------- 71 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA----------------------- 71 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------------
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHH-----------------------
Confidence 344455666666666654431 11155555555666666666666655554
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 002834 608 HLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLE 684 (875)
Q Consensus 608 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 684 (875)
..+.+...+..+...|...|++++|...|++..+ .+..+|..+...|...|++++|+..|+++.+
T Consensus 72 ------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 139 (275)
T 1xnf_A 72 ------------IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ 139 (275)
T ss_dssp ------------HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3333455566677778888888888888887654 3567889999999999999999999999998
Q ss_pred CCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCC-----
Q 002834 685 LGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP-VEAD----- 758 (875)
Q Consensus 685 ~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----- 758 (875)
. .|+.......+..+...|++++|...+++.... .+++...+ .++..+...++.++|.+.+++.. ..|+
T Consensus 140 ~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 214 (275)
T 1xnf_A 140 D--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK--SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHL 214 (275)
T ss_dssp H--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHH
T ss_pred h--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccc
Confidence 4 566665555666667889999999999888773 33343444 47778888889999999998874 3332
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHH
Q 002834 759 CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIR 816 (875)
Q Consensus 759 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 816 (875)
...|..+...+...|+++.|...++++++++|++.. ..+.++...|++++|++.+
T Consensus 215 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 215 SETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH---HHHHHHHHHHHHHHC----
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH---HHHHHHHHHHHHHhhHHHH
Confidence 477888899999999999999999999999998754 4477888899999998765
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.52 E-value=2.7e-12 Score=129.26 Aligned_cols=241 Identities=10% Similarity=-0.031 Sum_probs=119.2
Q ss_pred HHHHhhcCCChHHHHHHHHhhhcCCC---ccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcc--hHhcHHHHhhccc
Q 002834 531 VISGYANCGSADEAFMTFSRIYARDL---TPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAV--TIMSLLPVCSQMA 605 (875)
Q Consensus 531 l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~a~~~~~ 605 (875)
....+...|++++|+..++++.+.++ ..+..+..+|...|++++|+..+++..+.+..|+.. .+..+...+...|
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKG 88 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcc
Confidence 33444444444444444444433221 124445555566666666666666666532111111 1333333444444
Q ss_pred chHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 002834 606 SVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLEL 685 (875)
Q Consensus 606 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 685 (875)
+.+.|...+..+.+..+.+..++..+...|...|++++|...|+ +..+.
T Consensus 89 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~-------------------------------~al~~ 137 (272)
T 3u4t_A 89 QDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYME-------------------------------KQIRP 137 (272)
T ss_dssp CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHG-------------------------------GGCCS
T ss_pred cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHH-------------------------------HHhhc
Confidence 44444444444444433334444444445555555555555554 44432
Q ss_pred CCCCC-hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCC---hHHHHHHHHhCC----CC
Q 002834 686 GVNPD-HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQ---ISDAYSLVNRMP----VE 756 (875)
Q Consensus 686 g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~----~~ 756 (875)
.|+ ...+..+...+...+++++|.+.|+++.+ ..|+ ...+..++.++...|+ +++|...++++. ..
T Consensus 138 --~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 212 (272)
T 3u4t_A 138 --TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLE---LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPG 212 (272)
T ss_dssp --SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGG
T ss_pred --CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcc
Confidence 222 22233333123333355555555555544 2232 2344444444444444 444444444431 11
Q ss_pred CC------HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcC
Q 002834 757 AD------CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADA 807 (875)
Q Consensus 757 p~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 807 (875)
|+ ..+|..+...+...|+++.|...++++++++|+++.++..++.+....+
T Consensus 213 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 213 GAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp GGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred cccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 22 1456777888888999999999999999999999988888877665544
No 41
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.52 E-value=2.3e-13 Score=135.82 Aligned_cols=237 Identities=11% Similarity=-0.002 Sum_probs=183.0
Q ss_pred cccHHHHHHHhhcCCChHHHHHHHHhhhcCC--CccHHHHHHHHHHcCCchHHHHHHHHHHHCCC--CCCcchHhcHHHH
Q 002834 525 LVTFNPVISGYANCGSADEAFMTFSRIYARD--LTPWNLMIRVYAENDFPNQALSLFLKLQAQGM--KPDAVTIMSLLPV 600 (875)
Q Consensus 525 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~a 600 (875)
...|..+...+...|++++|...|+++...+ +..|..+..+|...|++++|+..+++..+... .|+...
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~------- 77 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKV------- 77 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH-------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHH-------
Confidence 4567888899999999999999999986544 33499999999999999999999999876421 111100
Q ss_pred hhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC--CChhhHHHHHHHHHHcCChHHHHHH
Q 002834 601 CSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ--KDVVMLTAMIGGYAMHGMGKAALKV 678 (875)
Q Consensus 601 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~ 678 (875)
...++..+...|.+.|++++|...|++... |+ ...+...|++++|+..
T Consensus 78 -----------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~ 127 (258)
T 3uq3_A 78 -----------------------ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKK 127 (258)
T ss_dssp -----------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHH
Confidence 123445566777777888888877776554 33 2346667889999999
Q ss_pred HHHHHHCCCCCC-hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC-CC
Q 002834 679 FSDMLELGVNPD-HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP-VE 756 (875)
Q Consensus 679 ~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~ 756 (875)
++++... .|+ ...+..+...+...|++++|.+.|+++.+. .+.+...+..++.+|.+.|++++|.+.++++. ..
T Consensus 128 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 203 (258)
T 3uq3_A 128 AEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD 203 (258)
T ss_dssp HHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 9999884 444 456777777899999999999999999873 22345688899999999999999999998874 34
Q ss_pred C-CHHHHHHHHHHHHhcCChhHHHHHHHHHhccc------CCCCccHHHHHHH
Q 002834 757 A-DCNVWGTLLGACRIHHEVELGRVVANRLFEME------ADNIGNYVVMSNL 802 (875)
Q Consensus 757 p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~ 802 (875)
| +...|..+..++...|+.+.|...++++++++ |++...+..++.+
T Consensus 204 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 204 PNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 4 56888899999999999999999999999999 7777666665543
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.50 E-value=7.3e-13 Score=143.32 Aligned_cols=342 Identities=11% Similarity=-0.007 Sum_probs=228.7
Q ss_pred HHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCH---HHHHHHHHhhccCCCcccHHHHHHHhhc
Q 002834 461 IIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNI---KYAFNVFQSLLEKRNLVTFNPVISGYAN 537 (875)
Q Consensus 461 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 537 (875)
+-..+.+.|+++.|.+.+....+.|. ++ .+..+...|...|+. ++|...|++.... ++..+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~----~~--A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY----SE--AQVGLADIQVGTRDPAQIKQAEATYRAAADT-SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC----CT--GGGTCC-----------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC----HH--HHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-CHHHHHHHHHHHHh
Confidence 45566788999999999999988763 22 234455566667777 8999999988877 77777777775555
Q ss_pred CC-----ChHHHHHHHHhhhcCCCc-cHHHHHHHHHHcCCchH---HHHHHHHHHHCCCCCCcchHhcHHHHhhcccchH
Q 002834 538 CG-----SADEAFMTFSRIYARDLT-PWNLMIRVYAENDFPNQ---ALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVH 608 (875)
Q Consensus 538 ~~-----~~~~A~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~---A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~ 608 (875)
.+ ++++|+..|++....+.. .+..|...|...+..++ +...+......|. ......+...+...+.++
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGG
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcc
Confidence 44 778999999988776544 48888888887766444 4555555554443 345555556666666555
Q ss_pred HHHHHHHHHHHhcCC-CchHHHHHHHHhHhcC---CHHHHHHHhccCCC---CChhhHHHHHHHHHHc----CChHHHHH
Q 002834 609 LLRQCHGYVIRACFD-GVRLNGALLHLYAKCG---SIFSASKIFQCHPQ---KDVVMLTAMIGGYAMH----GMGKAALK 677 (875)
Q Consensus 609 ~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~----g~~~~A~~ 677 (875)
.+......+.+.... ++..+..|..+|.+.| +.++|.+.|++..+ ++...+..+...|... ++.++|+.
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 444444444444444 6668889999999999 89999999987654 4445557777777654 68999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHH-H--hhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCC-----ChHHHHHH
Q 002834 678 VFSDMLELGVNPDHVVITAVLSA-C--SHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGG-----QISDAYSL 749 (875)
Q Consensus 678 ~~~~m~~~g~~p~~~~~~~ll~a-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~~ 749 (875)
+|++.. . -+...+..+... + ...++.++|.++|++..+ .| +...+..|..+|. .| ++++|.++
T Consensus 239 ~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 239 LLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA-AD---QPRAELLLGKLYY-EGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred HHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence 999986 3 334455555554 3 568999999999999876 33 5567777888777 45 99999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhcccCCCCccHHHHHHHHHh----cCCchhHHHHHHHHHh
Q 002834 750 VNRMPVEADCNVWGTLLGACRI----HHEVELGRVVANRLFEMEADNIGNYVVMSNLYAA----DARWDGVVEIRKLMKT 821 (875)
Q Consensus 750 ~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 821 (875)
+++.. ..++..+..|...|.. .+|.++|...++++.+ +.++.....|+.+|.. ..+.++|...++...+
T Consensus 310 ~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 310 FEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp HHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 99998 5567777777766655 3389999999999887 4567888999999985 4588999999888877
Q ss_pred CCC
Q 002834 822 RDL 824 (875)
Q Consensus 822 ~~~ 824 (875)
.|.
T Consensus 387 ~g~ 389 (452)
T 3e4b_A 387 QDT 389 (452)
T ss_dssp TCC
T ss_pred CCC
Confidence 664
No 43
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.49 E-value=6e-13 Score=139.00 Aligned_cols=242 Identities=9% Similarity=0.005 Sum_probs=179.3
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCC-cchHhcHHHHhhcccc-hHHHHHHHHHHHHhcCCCchHHHHHHHHhH
Q 002834 559 WNLMIRVYAENDFPNQALSLFLKLQAQGMKPD-AVTIMSLLPVCSQMAS-VHLLRQCHGYVIRACFDGVRLNGALLHLYA 636 (875)
Q Consensus 559 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 636 (875)
|..+..++.+.|++++|+..+++..+. .|+ ...|..+..++...|+ ++.|...++.+++..+.+..++..+..+|.
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 555556667777777777777777653 344 3345555556666665 777777777777777777778888888888
Q ss_pred hcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhh-cCcHHHH--
Q 002834 637 KCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSH-AGLVDEG-- 710 (875)
Q Consensus 637 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~-~g~~~~a-- 710 (875)
+.|++++|+..|+++.. .+..+|..+..++...|++++|+..|+++++.. +-+...|+.+..++.. .|..++|
T Consensus 178 ~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~ 256 (382)
T 2h6f_A 178 WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVL 256 (382)
T ss_dssp HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHH
T ss_pred HccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHH
Confidence 88888888888887664 567788888899999999999999999998852 3345677777777877 5654666
Q ss_pred ---HHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCC--ChHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC--------C-
Q 002834 711 ---LEIFRSIEKVQGIKPT-PEQYASLVDLLARGG--QISDAYSLVNRMPVEAD-CNVWGTLLGACRIHH--------E- 774 (875)
Q Consensus 711 ---~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~~--------~- 774 (875)
++.|+++.+ +.|+ ...|..+..+|...| ++++|+++++++...|+ ...+..+..++...| +
T Consensus 257 ~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~ 333 (382)
T 2h6f_A 257 EREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDI 333 (382)
T ss_dssp HHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHH
Confidence 578888876 5665 447888888888888 68889988888755554 467777777777653 2
Q ss_pred hhHHHHHHHHH-hcccCCCCccHHHHHHHHHhc
Q 002834 775 VELGRVVANRL-FEMEADNIGNYVVMSNLYAAD 806 (875)
Q Consensus 775 ~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 806 (875)
.++|+++++++ ++++|.....|..++..+..+
T Consensus 334 ~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 334 LNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 58899999999 899998888888887766543
No 44
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.48 E-value=2.4e-12 Score=139.19 Aligned_cols=375 Identities=8% Similarity=-0.052 Sum_probs=256.6
Q ss_pred HHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCch---hhHHHHHHHHHHhcCCCCCCchhHHHHHHHH
Q 002834 426 MLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLRE---GMVKETHGYLIKTGLLLGDTEHNIGNAILDA 502 (875)
Q Consensus 426 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~ 502 (875)
+...+.+.|++++|+++|++..+.|- |+.. ..+-..+...|+. +.|...++...+. ++..+..+...
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~-~~A~--~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-------~~~A~~~Lg~~ 78 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY-SEAQ--VGLADIQVGTRDPAQIKQAEATYRAAADT-------SPRAQARLGRL 78 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC-CTGG--GTCC-----------------------------------CHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC-HHHH--HHHHHHHHccCCCCCHHHHHHHHHHHHhC-------CHHHHHHHHHH
Confidence 45667788999999999999988763 3332 2222333446666 7888888877743 33445556664
Q ss_pred HHhcC-----CHHHHHHHHHhhccCCCcccHHHHHHHhhcCCChH---HHHHHHHhhhcC-CCccHHHHHHHHHHcCCch
Q 002834 503 YAKCR-----NIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSAD---EAFMTFSRIYAR-DLTPWNLMIRVYAENDFPN 573 (875)
Q Consensus 503 ~~~~g-----~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~---~A~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 573 (875)
+...+ ++++|...|++.....+...+..|...|...+..+ ++.+.+.+..+. ++..+..|...|...+.++
T Consensus 79 ~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 79 LAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp HHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGG
T ss_pred HHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcc
Confidence 55544 78899999998887656778888888887665533 355555555444 4555889999999999887
Q ss_pred HHHHHHHHHHHCCCCCCcchHhcHHHHhhccc---chHHHHHHHHHHHHhcCCCchHHHHHHHHhHhc----CCHHHHHH
Q 002834 574 QALSLFLKLQAQGMKPDAVTIMSLLPVCSQMA---SVHLLRQCHGYVIRACFDGVRLNGALLHLYAKC----GSIFSASK 646 (875)
Q Consensus 574 ~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~ 646 (875)
++........+.-...++..+..+-..+...| +.+.+...+....+.+......+..|..+|... +++++|..
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 77766555444333444457777778888888 999999999999999988777667788888665 79999999
Q ss_pred HhccCCCCChhhHHHHHHH-H--HHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcC-----cHHHHHHHHHHhH
Q 002834 647 IFQCHPQKDVVMLTAMIGG-Y--AMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAG-----LVDEGLEIFRSIE 718 (875)
Q Consensus 647 ~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g-----~~~~a~~~~~~~~ 718 (875)
.|++....+..++..|... | ...++.++|+.+|++..+.| +...+..+...|. .| +.++|.++|++..
T Consensus 239 ~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 239 LLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 9998774466788888887 4 46889999999999999876 5566666666665 55 9999999998874
Q ss_pred HHhCCCCChhHHHHHHHHhhc----CCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhcccC
Q 002834 719 KVQGIKPTPEQYASLVDLLAR----GGQISDAYSLVNRMPVEADCNVWGTLLGACRI----HHEVELGRVVANRLFEMEA 790 (875)
Q Consensus 719 ~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p 790 (875)
.-+...+..|..+|.. ..++++|..++++.....++.....|...|.. .+|.++|...++++.+..+
T Consensus 315 -----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 315 -----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp -----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred -----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 3345677778888776 44999999999998645556666677766653 4589999999999999876
Q ss_pred CCCccHHHHHHHHHh--cCCchhHHHHHHHHHh
Q 002834 791 DNIGNYVVMSNLYAA--DARWDGVVEIRKLMKT 821 (875)
Q Consensus 791 ~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~ 821 (875)
.++ ...+..+... .++.++|.++.+.++.
T Consensus 390 ~~a--~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 390 PEA--NDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHH--HHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 543 3445555333 3467777777666554
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.47 E-value=1.3e-12 Score=129.75 Aligned_cols=196 Identities=10% Similarity=-0.030 Sum_probs=163.6
Q ss_pred chHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 002834 625 VRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSAC 701 (875)
Q Consensus 625 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~ 701 (875)
...+..+...|...|++++|...|+++.+ .+..+|..+...|...|++++|++.++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 45667777888888999999888887653 466788889999999999999999999988853 33566777788889
Q ss_pred hhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHH
Q 002834 702 SHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELG 778 (875)
Q Consensus 702 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a 778 (875)
...|++++|.++++++.+ .+..|+ ...+..++.++...|++++|.+.++++. ..| +...|..+...+...|+++.|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999998866 335554 4578888999999999999999998874 334 567888888899999999999
Q ss_pred HHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 002834 779 RVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTR 822 (875)
Q Consensus 779 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 822 (875)
...++++++..|+++..+..++.+|...|++++|.+.++.+.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988887654
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.46 E-value=2.9e-12 Score=124.64 Aligned_cols=196 Identities=10% Similarity=-0.016 Sum_probs=165.7
Q ss_pred CchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 002834 624 GVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSA 700 (875)
Q Consensus 624 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a 700 (875)
+...+..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|++.++++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 556667788888899999999999887653 456788889999999999999999999998853 3456678888889
Q ss_pred Hhhc-CcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChh
Q 002834 701 CSHA-GLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVE 776 (875)
Q Consensus 701 ~~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~ 776 (875)
+... |++++|.++++++.+ .+..|+ ...+..++.++...|++++|.+.++++. ..| +...|..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 9999 999999999999876 334454 4578889999999999999999998874 344 5688888889999999999
Q ss_pred HHHHHHHHHhcccC-CCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 777 LGRVVANRLFEMEA-DNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 777 ~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
.|...++++++..| .++..+..++.++...|+.++|...++.+..
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 99999999999999 8888999999999999999999999888765
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.45 E-value=6.2e-13 Score=131.33 Aligned_cols=188 Identities=12% Similarity=0.048 Sum_probs=99.3
Q ss_pred HHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcH
Q 002834 631 LLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLV 707 (875)
Q Consensus 631 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~ 707 (875)
+...+...|++++|...|+++.+ .+...|..+...+...|++++|+..++++.+.. +.+...+..+...+...|++
T Consensus 29 ~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 107 (243)
T 2q7f_A 29 QMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMY 107 (243)
T ss_dssp -------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccH
Confidence 33344444444444444443322 234455555556666666666666666665532 22344555555566666666
Q ss_pred HHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 002834 708 DEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP--VEADCNVWGTLLGACRIHHEVELGRVVANRL 785 (875)
Q Consensus 708 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 785 (875)
++|.++++++.+. .+.+...+..++.++.+.|++++|.+.++++. .+.+...|..+...+...|+++.|+..++++
T Consensus 108 ~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 185 (243)
T 2q7f_A 108 KEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAV 185 (243)
T ss_dssp HHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666666552 12234455556666666666666666665553 2224455556666666666666666666666
Q ss_pred hcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 786 FEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 786 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
++..|+++..+..++.+|...|++++|.+.++...+
T Consensus 186 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 186 TEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 666666666666666666666666666666555543
No 48
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.45 E-value=1e-12 Score=137.15 Aligned_cols=222 Identities=9% Similarity=-0.026 Sum_probs=191.4
Q ss_pred hHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCC-HHHHHHHhccCCC---CChhhHHHHHHHHHH
Q 002834 593 TIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGS-IFSASKIFQCHPQ---KDVVMLTAMIGGYAM 668 (875)
Q Consensus 593 ~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 668 (875)
.+..+...+...|+.+.|...++.+++..+.+..++..+...|.+.|+ +++|+..|+++.. .+...|+.+..++..
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~ 178 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW 178 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 355556677788999999999999999999999999999999999997 9999999998765 567899999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhc-CCChHHH
Q 002834 669 HGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLAR-GGQISDA 746 (875)
Q Consensus 669 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~-~g~~~~A 746 (875)
.|++++|+..|+++++.. +-+...|..+..++...|++++|+..|+++.+ +.|+ ...|..++.+|.+ .|..++|
T Consensus 179 ~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~---l~P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 179 LRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred ccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCcchHH
Confidence 999999999999999852 33567788888899999999999999999988 5665 5589999999999 6666887
Q ss_pred -----HHHHHhCC-CCC-CHHHHHHHHHHHHhcC--ChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcC--------C-
Q 002834 747 -----YSLVNRMP-VEA-DCNVWGTLLGACRIHH--EVELGRVVANRLFEMEADNIGNYVVMSNLYAADA--------R- 808 (875)
Q Consensus 747 -----~~~~~~~~-~~p-~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------~- 808 (875)
++.+++.. ..| +...|..+...+...| +++.|...++++ +.+|+++..+..|+++|.+.| +
T Consensus 255 ~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~ 333 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDI 333 (382)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHH
Confidence 47777664 556 5688999999988877 689999999998 999999999999999999985 2
Q ss_pred chhHHHHHHHH
Q 002834 809 WDGVVEIRKLM 819 (875)
Q Consensus 809 ~~~A~~~~~~~ 819 (875)
.++|+++++.+
T Consensus 334 ~~~A~~~~~~l 344 (382)
T 2h6f_A 334 LNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 58999999887
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.45 E-value=1e-12 Score=129.68 Aligned_cols=216 Identities=10% Similarity=0.024 Sum_probs=166.8
Q ss_pred CCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHH
Q 002834 589 PDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGG 665 (875)
Q Consensus 589 p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 665 (875)
.....+..+...+...|+++.|...+..+.+..+.+...+..+...|.+.|++++|...|+++.+ .+..+|..+...
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 34556777778888999999999999999998888889999999999999999999999997654 467889999999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHH
Q 002834 666 YAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISD 745 (875)
Q Consensus 666 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 745 (875)
+...|++++|++.++++.+.. +.+...+..+...+...|++++|.++++++.+. .+.+...+..++.++.+.|++++
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999863 446677888888999999999999999999873 23346688999999999999999
Q ss_pred HHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcC
Q 002834 746 AYSLVNRMP--VEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADA 807 (875)
Q Consensus 746 A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 807 (875)
|.+.++++. .+.+..+|..+..++...|+++.|...++++++++|+++..+..++.+....|
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 999999874 33457889999999999999999999999999999999988887776655444
No 50
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.43 E-value=1.2e-11 Score=124.34 Aligned_cols=221 Identities=11% Similarity=-0.069 Sum_probs=170.6
Q ss_pred ccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhH
Q 002834 557 TPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYA 636 (875)
Q Consensus 557 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 636 (875)
..+..+...|...|++++|+..|++..+.+ +...+..+...|.
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~-------------------------------------~~~a~~~lg~~~~ 49 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDLK-------------------------------------ENSGCFNLGVLYY 49 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-------------------------------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-------------------------------------CHHHHHHHHHHHH
Confidence 346677778888888888888888877622 1223334555666
Q ss_pred h----cCCHHHHHHHhccCCC-CChhhHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhh----
Q 002834 637 K----CGSIFSASKIFQCHPQ-KDVVMLTAMIGGYAM----HGMGKAALKVFSDMLELGVNPDHVVITAVLSACSH---- 703 (875)
Q Consensus 637 ~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~---- 703 (875)
. .+++++|...|++..+ .+..++..+...|.. .+++++|+..|++..+.+ +...+..+...+..
T Consensus 50 ~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~ 126 (273)
T 1ouv_A 50 QGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVV 126 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSS
T ss_pred cCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCc
Confidence 6 7777777777776543 466778888888888 889999999999988864 56677777778888
Q ss_pred cCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhc----CCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCh
Q 002834 704 AGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLAR----GGQISDAYSLVNRMPVEADCNVWGTLLGACRI----HHEV 775 (875)
Q Consensus 704 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~ 775 (875)
.+++++|.++|++..+ .+ +...+..+..+|.. .+++++|++++++.....++..+..+...+.. .+++
T Consensus 127 ~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~ 202 (273)
T 1ouv_A 127 TRDFKKAVEYFTKACD-LN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNF 202 (273)
T ss_dssp CCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCH
T ss_pred ccCHHHHHHHHHHHHh-cC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccH
Confidence 8999999999998877 22 45567778888877 88999999998887533456778888888888 8999
Q ss_pred hHHHHHHHHHhcccCCCCccHHHHHHHHHh----cCCchhHHHHHHHHHhCC
Q 002834 776 ELGRVVANRLFEMEADNIGNYVVMSNLYAA----DARWDGVVEIRKLMKTRD 823 (875)
Q Consensus 776 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 823 (875)
++|...++++++.+| +..+..++.+|.. .|++++|.+.+++..+.|
T Consensus 203 ~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 203 KEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 999999999998866 6678889999998 899999999887776654
No 51
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.43 E-value=5.3e-12 Score=118.34 Aligned_cols=163 Identities=13% Similarity=0.123 Sum_probs=140.1
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHH
Q 002834 655 DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNP-DHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYAS 732 (875)
Q Consensus 655 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 732 (875)
+...|..+...|...|++++|++.|++..+. .| +...+..+..++.+.|++++|...++.+.. ..|+ ...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~ 78 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV---LDTTSAEAYYI 78 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCchhHHHHHH
Confidence 5667889999999999999999999999885 45 456677788899999999999999999877 3444 457788
Q ss_pred HHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCch
Q 002834 733 LVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWD 810 (875)
Q Consensus 733 l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 810 (875)
++..+...+++++|.+.+++.. ..| +...|..+..++...|++++|+..++++++++|+++.+|..+|.+|...|+++
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 8889999999999999988874 344 56888889999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhC
Q 002834 811 GVVEIRKLMKTR 822 (875)
Q Consensus 811 ~A~~~~~~~~~~ 822 (875)
+|++.+++..+.
T Consensus 159 ~A~~~~~~al~~ 170 (184)
T 3vtx_A 159 EAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 999988776553
No 52
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.42 E-value=4.6e-13 Score=145.86 Aligned_cols=201 Identities=9% Similarity=-0.066 Sum_probs=168.0
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHhHhcCCH-HHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 002834 610 LRQCHGYVIRACFDGVRLNGALLHLYAKCGSI-FSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLEL 685 (875)
Q Consensus 610 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 685 (875)
+...+.......+.+...+..+...|...|++ ++|++.|++..+ .+..+|..+...|...|++++|++.|++..+.
T Consensus 87 al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 166 (474)
T 4abn_A 87 TLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH 166 (474)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 33333333333333566667777778888888 888888887653 35678999999999999999999999999984
Q ss_pred CCCCChhhHHHHHHHHhhc---------CcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcC--------CChHHHH
Q 002834 686 GVNPDHVVITAVLSACSHA---------GLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARG--------GQISDAY 747 (875)
Q Consensus 686 g~~p~~~~~~~ll~a~~~~---------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~ 747 (875)
.|+...+..+..++... |++++|.+.|+++.+ +.|+ ...|..++.+|... |++++|+
T Consensus 167 --~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~ 241 (474)
T 4abn_A 167 --CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ---MDVLDGRSWYILGNAYLSLYFNTGQNPKISQQAL 241 (474)
T ss_dssp --CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence 67778888888899999 999999999999987 4555 55889999999988 9999999
Q ss_pred HHHHhCC-CCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHH
Q 002834 748 SLVNRMP-VEA----DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEI 815 (875)
Q Consensus 748 ~~~~~~~-~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 815 (875)
+.+++.. ..| ++..|..+..++...|+++.|...++++++++|+++..+..++.++...|++++|++.
T Consensus 242 ~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 242 SAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999885 455 6788999999999999999999999999999999999999999999999999999974
No 53
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.42 E-value=6.4e-12 Score=126.45 Aligned_cols=225 Identities=12% Similarity=0.003 Sum_probs=170.4
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhc
Q 002834 559 WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKC 638 (875)
Q Consensus 559 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 638 (875)
+......+...|++++|+..|++..+. .|+ +...+..+...|...
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~---------------------------------~~~~~~~l~~~~~~~ 50 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAK--KYN---------------------------------SPYIYNRRAVCYYEL 50 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHT--TCC---------------------------------CSTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh--CCC---------------------------------cHHHHHHHHHHHHHH
Confidence 445566666667777777776666653 232 333445566677777
Q ss_pred CCHHHHHHHhccCCC--CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHH
Q 002834 639 GSIFSASKIFQCHPQ--KD----VVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLE 712 (875)
Q Consensus 639 g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~ 712 (875)
|++++|...|++..+ ++ ..+|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|.+
T Consensus 51 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 129 (272)
T 3u4t_A 51 AKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQ 129 (272)
T ss_dssp TCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHH
Confidence 888888777776543 22 2348889999999999999999999999852 3345678888889999999999999
Q ss_pred HHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCC---hhHHHHHHHHHh
Q 002834 713 IFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHE---VELGRVVANRLF 786 (875)
Q Consensus 713 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~ 786 (875)
.|+++.+ ..|+ ...+..++..+...+++++|.+.++++. ..| +...|..+..++...|+ .+.|+..+++++
T Consensus 130 ~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 130 YMEKQIR---PTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp HHGGGCC---SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred HHHHHhh---cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 9999866 4565 4477778834444569999999999885 445 46778888888888888 888999999999
Q ss_pred ccc---CCC-----CccHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 002834 787 EME---ADN-----IGNYVVMSNLYAADARWDGVVEIRKLMKTR 822 (875)
Q Consensus 787 ~~~---p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 822 (875)
++. |+. ...|..+|.+|...|++++|.+.+++..+.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp HHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 886 442 247888999999999999999988877653
No 54
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.41 E-value=4.8e-12 Score=121.91 Aligned_cols=110 Identities=15% Similarity=0.112 Sum_probs=49.0
Q ss_pred CCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHH
Q 002834 639 GSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFR 715 (875)
Q Consensus 639 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~ 715 (875)
|++++|...|++..+ .+...|..+...|...|++++|+..|++..+.. .+...+..+..++...|++++|+..|+
T Consensus 98 g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~ 175 (217)
T 2pl2_A 98 GYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYA 175 (217)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455555555544332 233445555555555555555555555555543 444455555555555555555555555
Q ss_pred HhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhC
Q 002834 716 SIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRM 753 (875)
Q Consensus 716 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 753 (875)
++.+ ..|+ ...+..++.++.+.|++++|.+.+++.
T Consensus 176 ~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 176 KALE---QAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHH---HSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHH---hCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 5544 2333 234555555555555555555555443
No 55
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.41 E-value=2.9e-11 Score=121.60 Aligned_cols=150 Identities=10% Similarity=-0.044 Sum_probs=112.8
Q ss_pred cCCHHHHHHHhccCCC-CChhhHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhh----cCcHH
Q 002834 638 CGSIFSASKIFQCHPQ-KDVVMLTAMIGGYAM----HGMGKAALKVFSDMLELGVNPDHVVITAVLSACSH----AGLVD 708 (875)
Q Consensus 638 ~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~----~g~~~ 708 (875)
.+++++|...|++..+ .+..++..+...|.. .+++++|++.|++..+.+ +...+..+...+.. .++++
T Consensus 91 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~ 167 (273)
T 1ouv_A 91 SQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLK 167 (273)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHH
Confidence 4444444444443322 245567777777887 889999999999988865 45566667777777 88999
Q ss_pred HHHHHHHHhHHHhCCCCChhHHHHHHHHhhc----CCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHH
Q 002834 709 EGLEIFRSIEKVQGIKPTPEQYASLVDLLAR----GGQISDAYSLVNRMPVEADCNVWGTLLGACRI----HHEVELGRV 780 (875)
Q Consensus 709 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~ 780 (875)
+|.++|++..+. .+...+..+..+|.. .|++++|++++++.....+...+..+...+.. .++.++|..
T Consensus 168 ~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~ 243 (273)
T 1ouv_A 168 KALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIE 243 (273)
T ss_dssp HHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHH
T ss_pred HHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHH
Confidence 999999988772 245677788888888 99999999999887533346778888888888 899999999
Q ss_pred HHHHHhcccCCCCc
Q 002834 781 VANRLFEMEADNIG 794 (875)
Q Consensus 781 ~~~~~~~~~p~~~~ 794 (875)
.++++++++|+++.
T Consensus 244 ~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 244 NFKKGCKLGAKGAC 257 (273)
T ss_dssp HHHHHHHHTCHHHH
T ss_pred HHHHHHHcCCHHHH
Confidence 99999999886543
No 56
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.41 E-value=6e-12 Score=124.98 Aligned_cols=201 Identities=10% Similarity=0.038 Sum_probs=156.5
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhc
Q 002834 559 WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKC 638 (875)
Q Consensus 559 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 638 (875)
|..+...|...|++++|+..|+++.+.. |+ +...+..+...|.+.
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~---------------------------------~~~~~~~la~~~~~~ 84 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEID--PS---------------------------------SADAHAALAVVFQTE 84 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHC--TT---------------------------------CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC--CC---------------------------------hHHHHHHHHHHHHHc
Confidence 7777778888888888888888876542 22 233445556667777
Q ss_pred CCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhhcCcHHHHHHHH
Q 002834 639 GSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPD-HVVITAVLSACSHAGLVDEGLEIF 714 (875)
Q Consensus 639 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~ 714 (875)
|++++|.+.|+++.+ .+...|..+...|...|++++|++.++++.+.+..|+ ...+..+..++...|++++|.+++
T Consensus 85 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 164 (252)
T 2ho1_A 85 MEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYF 164 (252)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 777777777776543 3567788888889999999999999999887434554 456777777899999999999999
Q ss_pred HHhHHHhCCCC-ChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCC
Q 002834 715 RSIEKVQGIKP-TPEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEAD 791 (875)
Q Consensus 715 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 791 (875)
+++.+. .| +...+..++.++...|++++|.+.++++. ..| +...+..+...+...|+.+.|.+.+++++++.|+
T Consensus 165 ~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 165 EKSLRL---NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 998773 34 35688899999999999999999998874 334 5677888888889999999999999999999999
Q ss_pred CCccHH
Q 002834 792 NIGNYV 797 (875)
Q Consensus 792 ~~~~~~ 797 (875)
++....
T Consensus 242 ~~~~~~ 247 (252)
T 2ho1_A 242 SLEYQE 247 (252)
T ss_dssp SHHHHH
T ss_pred CHHHHH
Confidence 876544
No 57
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.40 E-value=1.7e-12 Score=139.87 Aligned_cols=264 Identities=13% Similarity=0.043 Sum_probs=177.6
Q ss_pred cHHHHHHHhhcCCChHHHHHHHHhhhcCCCc-------cHHHHHHHHHHcCCchHHHHHHHHHHHCCCC-CCcchHhcHH
Q 002834 527 TFNPVISGYANCGSADEAFMTFSRIYARDLT-------PWNLMIRVYAENDFPNQALSLFLKLQAQGMK-PDAVTIMSLL 598 (875)
Q Consensus 527 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~ll 598 (875)
.+..+...+...|++++|...|+++...++. .|..+..+|...|++++|+..+++..+..-. .+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-------- 121 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND-------- 121 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccC--------
Confidence 3444555666677777777777666544333 2556666666677777777666665432000 00
Q ss_pred HHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC---------CChhhHHHHHHHHHHc
Q 002834 599 PVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ---------KDVVMLTAMIGGYAMH 669 (875)
Q Consensus 599 ~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~ 669 (875)
.+.....+..+...|...|++++|...|++... ....+|..+...|...
T Consensus 122 ----------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 179 (411)
T 4a1s_A 122 ----------------------RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAK 179 (411)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHc
Confidence 000334455666667777777777777765443 1234677788888888
Q ss_pred CC-----------------hHHHHHHHHHHHHC----CCCCC-hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-
Q 002834 670 GM-----------------GKAALKVFSDMLEL----GVNPD-HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT- 726 (875)
Q Consensus 670 g~-----------------~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~- 726 (875)
|+ +++|++.+++..+. +..|. ..++..+...+...|++++|.++++++.+...-.++
T Consensus 180 g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 259 (411)
T 4a1s_A 180 GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR 259 (411)
T ss_dssp HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc
Confidence 88 88888888776542 11121 235666777888899999999999888763221122
Q ss_pred ---hhHHHHHHHHhhcCCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCC--
Q 002834 727 ---PEQYASLVDLLARGGQISDAYSLVNRMP----VEAD----CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNI-- 793 (875)
Q Consensus 727 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-- 793 (875)
...+..++.+|...|++++|.+.+++.. ...+ ..++..+...+...|+++.|...+++++++.++..
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 339 (411)
T 4a1s_A 260 AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR 339 (411)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 2277888899999999999999887763 1111 35677788888899999999999999998866543
Q ss_pred ----ccHHHHHHHHHhcCCchhHHHHHHHHH
Q 002834 794 ----GNYVVMSNLYAADARWDGVVEIRKLMK 820 (875)
Q Consensus 794 ----~~~~~l~~~~~~~g~~~~A~~~~~~~~ 820 (875)
..+..++.+|...|++++|.+.++...
T Consensus 340 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 340 IGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 378889999999999999999776654
No 58
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.39 E-value=1.1e-11 Score=120.65 Aligned_cols=203 Identities=9% Similarity=-0.053 Sum_probs=153.1
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhc
Q 002834 559 WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKC 638 (875)
Q Consensus 559 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 638 (875)
+..+...+...|++++|+..|+++.+. .+.+...+..+...|...
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~-----------------------------------~~~~~~~~~~l~~~~~~~ 55 (225)
T 2vq2_A 11 KTQLAMEYMRGQDYRQATASIEDALKS-----------------------------------DPKNELAWLVRAEIYQYL 55 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------------CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh-----------------------------------CccchHHHHHHHHHHHHc
Confidence 566666777777777777777766553 222333445566667777
Q ss_pred CCHHHHHHHhccCCC---CChhhHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhhcCcHHHHHHH
Q 002834 639 GSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMH-GMGKAALKVFSDMLELGVNPD-HVVITAVLSACSHAGLVDEGLEI 713 (875)
Q Consensus 639 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~ 713 (875)
|++++|.+.|++..+ .+..+|..+...+... |++++|+..++++.+.+..|+ ...+..+..++...|++++|.+.
T Consensus 56 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 135 (225)
T 2vq2_A 56 KVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAY 135 (225)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777776543 3566788888889999 999999999999888433444 45677777789999999999999
Q ss_pred HHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHhccc
Q 002834 714 FRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VE--ADCNVWGTLLGACRIHHEVELGRVVANRLFEME 789 (875)
Q Consensus 714 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 789 (875)
++++.+. .|+ ...+..++.++.+.|++++|.+.++++. .. .+...+..+...+...|+.+.+...++.+.+.+
T Consensus 136 ~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 136 LKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 9998773 344 5688889999999999999999998874 33 455667666677788999999999999999999
Q ss_pred CCCCccHHHH
Q 002834 790 ADNIGNYVVM 799 (875)
Q Consensus 790 p~~~~~~~~l 799 (875)
|+++.....+
T Consensus 213 p~~~~~~~~l 222 (225)
T 2vq2_A 213 PYSEELQTVL 222 (225)
T ss_dssp TTCHHHHHHH
T ss_pred CCCHHHHHHh
Confidence 9988766554
No 59
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.38 E-value=1.8e-12 Score=130.85 Aligned_cols=216 Identities=11% Similarity=-0.032 Sum_probs=173.4
Q ss_pred hcccchHHHHHHHHHHHHhcC---C-CchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHH
Q 002834 602 SQMASVHLLRQCHGYVIRACF---D-GVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKA 674 (875)
Q Consensus 602 ~~~~~~~~a~~~~~~~~~~~~---~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 674 (875)
...++++.|...+..+.+... + +..++..+...|...|++++|...|+++.+ .+..+|..+...|...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 344666666666666665532 2 566778888999999999999999998664 467899999999999999999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC
Q 002834 675 ALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP 754 (875)
Q Consensus 675 A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 754 (875)
|+..|+++.+.. +.+...+..+..++...|++++|.++|+++.+ ..|+..........+...|++++|...+++..
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ---DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999852 33567788888899999999999999999987 45665555555566677899999999997663
Q ss_pred --CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCC----CccHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 002834 755 --VEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADN----IGNYVVMSNLYAADARWDGVVEIRKLMKTR 822 (875)
Q Consensus 755 --~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 822 (875)
.+++...| .++..+...++.+.|...++++++..|.. +..+..+|.+|...|++++|.+.++.....
T Consensus 172 ~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 172 EKSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hcCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 33444444 46677778888999999999999988753 678999999999999999999999887653
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.37 E-value=5.5e-12 Score=135.49 Aligned_cols=286 Identities=11% Similarity=-0.009 Sum_probs=149.9
Q ss_pred cccHHHHHHHhhcCCChHHHHHHHHhhhcCCCcc-------HHHHHHHHHHcCCchHHHHHHHHHHHC----CCCCC-cc
Q 002834 525 LVTFNPVISGYANCGSADEAFMTFSRIYARDLTP-------WNLMIRVYAENDFPNQALSLFLKLQAQ----GMKPD-AV 592 (875)
Q Consensus 525 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~~p~-~~ 592 (875)
...+......+...|++++|...|+++...++.. |..+...|...|++++|+..+++.... +-.|. ..
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 3445566677888888888888888875544332 667778888888888888888876432 11111 22
Q ss_pred hHhcHHHHhhcccchHHHHHHHHHHHHhcCC------CchHHHHHHHHhHhcCC--------------------HHHHHH
Q 002834 593 TIMSLLPVCSQMASVHLLRQCHGYVIRACFD------GVRLNGALLHLYAKCGS--------------------IFSASK 646 (875)
Q Consensus 593 ~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~--------------------~~~A~~ 646 (875)
++..+...+...|+++.|...+..+.+.... ...++..+...|...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 3444455555666666666666555543222 13345555555555555 555555
Q ss_pred HhccCCC-----C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----hhhHHHHHHHHhhcCcHHHHHH
Q 002834 647 IFQCHPQ-----K----DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGV-NPD----HVVITAVLSACSHAGLVDEGLE 712 (875)
Q Consensus 647 ~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~a~~~~g~~~~a~~ 712 (875)
.+++... . ...+|..+...|...|++++|+..+++..+... .++ ..++..+...+...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 5543321 1 122455555555555555555555555543210 011 1134444445555555555555
Q ss_pred HHHHhHHHhCCCCC----hhHHHHHHHHhhcCCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCChhHHHH
Q 002834 713 IFRSIEKVQGIKPT----PEQYASLVDLLARGGQISDAYSLVNRMP----VEAD----CNVWGTLLGACRIHHEVELGRV 780 (875)
Q Consensus 713 ~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~~~~~~a~~ 780 (875)
+++++.+...-.++ ...+..++.+|...|++++|.+.+++.. ..++ ..++..+...+...|+++.|..
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 55555432111111 2244555555555555555555555441 1111 2344445555555555555555
Q ss_pred HHHHHhcccCCCCc------cHHHHHHHHHhcCCch
Q 002834 781 VANRLFEMEADNIG------NYVVMSNLYAADARWD 810 (875)
Q Consensus 781 ~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~ 810 (875)
.+++++++.+.... .+..++.+|...|+..
T Consensus 329 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 329 FAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 55555555555422 3344444444444444
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.36 E-value=1.8e-12 Score=139.36 Aligned_cols=264 Identities=9% Similarity=-0.021 Sum_probs=179.0
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhhccC-CC-----cccHHHHHHHhhcCCChHHHHHHHHhhhcC----C----
Q 002834 490 DTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEK-RN-----LVTFNPVISGYANCGSADEAFMTFSRIYAR----D---- 555 (875)
Q Consensus 490 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~---- 555 (875)
......+......+...|++++|...|++.... |+ ..+|..+...|...|++++|...++++... +
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 334445566677778888888888888877653 32 246677777888888888888888776322 1
Q ss_pred -CccHHHHHHHHHHcCCchHHHHHHHHHHHCCCC-CC----cchHhcHHHHhhcccc--------------------hHH
Q 002834 556 -LTPWNLMIRVYAENDFPNQALSLFLKLQAQGMK-PD----AVTIMSLLPVCSQMAS--------------------VHL 609 (875)
Q Consensus 556 -~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~-p~----~~~~~~ll~a~~~~~~--------------------~~~ 609 (875)
...+..+...|...|++++|+..+++..+.... ++ ..++..+...+...|+ ++.
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 112777788888888888888888876543111 12 2356666667777788 888
Q ss_pred HHHHHHHHHHhcC-----C-CchHHHHHHHHhHhcCCHHHHHHHhccCCC-----CC----hhhHHHHHHHHHHcCChHH
Q 002834 610 LRQCHGYVIRACF-----D-GVRLNGALLHLYAKCGSIFSASKIFQCHPQ-----KD----VVMLTAMIGGYAMHGMGKA 674 (875)
Q Consensus 610 a~~~~~~~~~~~~-----~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~ 674 (875)
|...+....+... + ....+..+...|...|++++|...|++..+ ++ ..+|..+...|...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 8777776655411 1 345667778888888888888888876553 22 2367778888888888888
Q ss_pred HHHHHHHHHHCCC-CCC----hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC----hhHHHHHHHHhhcCCChHH
Q 002834 675 ALKVFSDMLELGV-NPD----HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT----PEQYASLVDLLARGGQISD 745 (875)
Q Consensus 675 A~~~~~~m~~~g~-~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~ 745 (875)
|+..+++..+... .++ ..++..+...+...|++++|.++++++.+...-.++ ...+..++.+|...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 8888887765310 011 345666777788888888888888887653222222 3467778888888888888
Q ss_pred HHHHHHhC
Q 002834 746 AYSLVNRM 753 (875)
Q Consensus 746 A~~~~~~~ 753 (875)
|.+.+++.
T Consensus 326 A~~~~~~a 333 (406)
T 3sf4_A 326 AMHFAEKH 333 (406)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887775
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.36 E-value=5.2e-12 Score=131.66 Aligned_cols=262 Identities=12% Similarity=0.032 Sum_probs=178.2
Q ss_pred HHHHHHhhcCCChHHHHHHHHhhhcCCCcc-------HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHh
Q 002834 529 NPVISGYANCGSADEAFMTFSRIYARDLTP-------WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVC 601 (875)
Q Consensus 529 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~ 601 (875)
......+...|++++|...++++...++.. +..+...|...|++++|+..+++..+..
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------------- 73 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA--------------- 73 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh---------------
Confidence 334445555666666666666554332221 4455555556666666666555543210
Q ss_pred hcccchHHHHHHHHHHHHhc-CC-CchHHHHHHHHhHhcCCHHHHHHHhccCCC-----CC----hhhHHHHHHHHHHcC
Q 002834 602 SQMASVHLLRQCHGYVIRAC-FD-GVRLNGALLHLYAKCGSIFSASKIFQCHPQ-----KD----VVMLTAMIGGYAMHG 670 (875)
Q Consensus 602 ~~~~~~~~a~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g 670 (875)
.+.+ .+ ...++..+...|...|++++|...+++..+ ++ ..++..+...|...|
T Consensus 74 ----------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~ 137 (338)
T 3ro2_A 74 ----------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG 137 (338)
T ss_dssp ----------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcC
Confidence 0001 01 234556667777788888888877776443 22 237778888888888
Q ss_pred C--------------------hHHHHHHHHHHHHC----CCCCC-hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCC
Q 002834 671 M--------------------GKAALKVFSDMLEL----GVNPD-HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKP 725 (875)
Q Consensus 671 ~--------------------~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 725 (875)
+ +++|+..+++..+. +..|. ...+..+...+...|++++|.++++++.+...-.+
T Consensus 138 ~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 217 (338)
T 3ro2_A 138 KSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 217 (338)
T ss_dssp HTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred cccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC
Confidence 8 88888888876542 11122 23566777788999999999999998875322112
Q ss_pred C----hhHHHHHHHHhhcCCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCC
Q 002834 726 T----PEQYASLVDLLARGGQISDAYSLVNRMP----VEAD----CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNI 793 (875)
Q Consensus 726 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 793 (875)
+ ...+..++.++...|++++|.+.+++.. ..++ ..++..+...+...|+++.|...+++++++.|...
T Consensus 218 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 297 (338)
T 3ro2_A 218 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 297 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 2 2378888999999999999999988763 1122 45677788889999999999999999999876543
Q ss_pred ------ccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 794 ------GNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 794 ------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
..+..++.+|...|++++|.+.+++..+
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 298 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3788899999999999999998887765
No 63
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.34 E-value=1.6e-11 Score=138.64 Aligned_cols=161 Identities=14% Similarity=0.204 Sum_probs=141.7
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHH
Q 002834 655 DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPD-HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYAS 732 (875)
Q Consensus 655 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 732 (875)
+..+|+.|...|...|++++|++.|++.++. .|+ ...+..+..++.+.|++++|++.|+++.+ +.|+ ...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHH
Confidence 3567899999999999999999999999984 555 56788888899999999999999999987 5676 458999
Q ss_pred HHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCch
Q 002834 733 LVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWD 810 (875)
Q Consensus 733 l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 810 (875)
++.+|.+.|++++|++.+++.. ..| +...|..+..++...|++++|++.++++++++|+++..+..|+.+|...|+|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 9999999999999999998874 556 46889999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHH
Q 002834 811 GVVEIRKLMK 820 (875)
Q Consensus 811 ~A~~~~~~~~ 820 (875)
+|.+.+++..
T Consensus 163 ~A~~~~~kal 172 (723)
T 4gyw_A 163 DYDERMKKLV 172 (723)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998766554
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.33 E-value=1.6e-11 Score=115.02 Aligned_cols=166 Identities=10% Similarity=0.044 Sum_probs=142.1
Q ss_pred CchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 002834 624 GVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSA 700 (875)
Q Consensus 624 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a 700 (875)
+..++..+...|.+.|++++|++.|++..+ .+..+|..+..+|...|++++|+..+++..... +-+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 456788889999999999999999998664 467789999999999999999999999998852 3345566666778
Q ss_pred HhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhH
Q 002834 701 CSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVEL 777 (875)
Q Consensus 701 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~ 777 (875)
+...++++.|.+.+++..+ ..|+ ...+..++.+|.+.|++++|++.+++.. ..| ++.+|..+..++...|++++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIA---LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHH---hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 8999999999999999977 3454 5588899999999999999999999884 445 56889999999999999999
Q ss_pred HHHHHHHHhcccCCCC
Q 002834 778 GRVVANRLFEMEADNI 793 (875)
Q Consensus 778 a~~~~~~~~~~~p~~~ 793 (875)
|+..++++++++|+++
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999999999864
No 65
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.29 E-value=5.9e-11 Score=115.62 Aligned_cols=152 Identities=10% Similarity=-0.016 Sum_probs=111.1
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCCh-hHHHHH
Q 002834 655 DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTP-EQYASL 733 (875)
Q Consensus 655 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l 733 (875)
|+..|..+...+...|++++|+..|++..+...+++...+..+..++...|++++|++.|++..+ ..|+. ..|..+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l 82 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK---KNYNLANAYIGK 82 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH---hCcchHHHHHHH
Confidence 45667777777778888888888888877754336666666666777788888888888887766 45553 477777
Q ss_pred HHHhhcCCChHHHHHHHHhCC-CCC-CH-------HHHHHHHHHHHhcCChhHHHHHHHHHhcccCC--CCccHHHHHHH
Q 002834 734 VDLLARGGQISDAYSLVNRMP-VEA-DC-------NVWGTLLGACRIHHEVELGRVVANRLFEMEAD--NIGNYVVMSNL 802 (875)
Q Consensus 734 ~~~~~~~g~~~~A~~~~~~~~-~~p-~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 802 (875)
+.+|...|++++|++.+++.. ..| +. ..|..+...+...|+++.|+..++++++++|+ ++..+..+|.+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 888888888888888777763 333 33 34666667777778888888888888888888 77788888888
Q ss_pred HHhcCCc
Q 002834 803 YAADARW 809 (875)
Q Consensus 803 ~~~~g~~ 809 (875)
|...|+.
T Consensus 163 ~~~~~~~ 169 (228)
T 4i17_A 163 FYNNGAD 169 (228)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8777777
No 66
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.28 E-value=2.4e-11 Score=130.66 Aligned_cols=268 Identities=12% Similarity=0.039 Sum_probs=191.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhhccC-CC-c----ccHHHHHHHhhcCCChHHHHHHHHhhhcC----C-----Ccc
Q 002834 494 NIGNAILDAYAKCRNIKYAFNVFQSLLEK-RN-L----VTFNPVISGYANCGSADEAFMTFSRIYAR----D-----LTP 558 (875)
Q Consensus 494 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p~-~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~-----~~~ 558 (875)
..+..+...+...|++++|...|++.... |+ . ..|..+...|...|++++|...++++... + ...
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 34456677889999999999999988764 43 2 46888889999999999999999887432 1 122
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCCCC-CCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHh
Q 002834 559 WNLMIRVYAENDFPNQALSLFLKLQAQGMK-PDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAK 637 (875)
Q Consensus 559 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 637 (875)
+..+...|...|++++|+..+++..+.... .+... ....+..+...|..
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------------------------------~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLS------------------------------EGRALYNLGNVYHA 178 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH------------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHH------------------------------HHHHHHHHHHHHHH
Confidence 888999999999999999999887653100 00000 11223344445555
Q ss_pred cCC-----------------HHHHHHHhccCCC---------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC
Q 002834 638 CGS-----------------IFSASKIFQCHPQ---------KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVN-PD 690 (875)
Q Consensus 638 ~g~-----------------~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~ 690 (875)
.|+ +++|.+.+++..+ ....+|..+...|...|++++|+..+++..+.... ++
T Consensus 179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 555 5555555544322 12346778888899999999999999888763111 11
Q ss_pred ----hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC----hhHHHHHHHHhhcCCChHHHHHHHHhCC----CCCC
Q 002834 691 ----HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT----PEQYASLVDLLARGGQISDAYSLVNRMP----VEAD 758 (875)
Q Consensus 691 ----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~ 758 (875)
...+..+...+...|++++|.++++++.+...-..+ ...+..++.+|...|++++|.+.+++.. ..++
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 226777788899999999999999988764221111 4578889999999999999999998873 1111
Q ss_pred ----HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCC
Q 002834 759 ----CNVWGTLLGACRIHHEVELGRVVANRLFEMEAD 791 (875)
Q Consensus 759 ----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 791 (875)
..++..+..++...|+.+.|...+++++++.++
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 346778888899999999999999999988653
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.27 E-value=6e-11 Score=126.05 Aligned_cols=163 Identities=9% Similarity=0.044 Sum_probs=97.7
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHh---CCCCC-h
Q 002834 657 VMLTAMIGGYAMHGMGKAALKVFSDMLELGV-NPD----HVVITAVLSACSHAGLVDEGLEIFRSIEKVQ---GIKPT-P 727 (875)
Q Consensus 657 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~-~ 727 (875)
.+++.+...|...|++++|+..|++..+... .++ ..++..+..+|...|++++|.+.+++..+.. +..|. .
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 3566666677777777777777766654210 011 1255666667777777777777777665421 22133 3
Q ss_pred hHHHHHHHHhhcCCChHHHHHHHHhCC------CCCCH-HHHHHHHHHHHhcCC---hhHHHHHHHHHhcccCCCCccHH
Q 002834 728 EQYASLVDLLARGGQISDAYSLVNRMP------VEADC-NVWGTLLGACRIHHE---VELGRVVANRLFEMEADNIGNYV 797 (875)
Q Consensus 728 ~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~p~~-~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~ 797 (875)
.++..++.+|.+.|++++|.+.+++.. ..|.. ..+..+...+...|+ .+.|...+++. ...|.....+.
T Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~ 343 (383)
T 3ulq_A 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAI 343 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHH
Confidence 366777777777777777777776652 12211 223445555556666 66666666655 33344455677
Q ss_pred HHHHHHHhcCCchhHHHHHHHHH
Q 002834 798 VMSNLYAADARWDGVVEIRKLMK 820 (875)
Q Consensus 798 ~l~~~~~~~g~~~~A~~~~~~~~ 820 (875)
.+|.+|...|++++|.+.++...
T Consensus 344 ~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 344 DVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 78888888888888888665553
No 68
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.27 E-value=1.8e-10 Score=117.91 Aligned_cols=182 Identities=13% Similarity=0.025 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHh-cCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC--C-Chh-hHHHHHHHHHHcCChHHHHHHHHHH
Q 002834 608 HLLRQCHGYVIRA-CFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ--K-DVV-MLTAMIGGYAMHGMGKAALKVFSDM 682 (875)
Q Consensus 608 ~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m 682 (875)
+.|..+++.+++. .+.+..++..++..+.+.|++++|..+|++..+ | +.. +|..++..+.+.|++++|..+|++.
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 5555555555552 444555555555555555555555555555443 2 222 4555555555555555555555555
Q ss_pred HHCCCCCChhhHHHHHHHHh-hcCcHHHHHHHHHHhHHHhCCCC-ChhHHHHHHHHhhcCCChHHHHHHHHhCC----CC
Q 002834 683 LELGVNPDHVVITAVLSACS-HAGLVDEGLEIFRSIEKVQGIKP-TPEQYASLVDLLARGGQISDAYSLVNRMP----VE 756 (875)
Q Consensus 683 ~~~g~~p~~~~~~~ll~a~~-~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~ 756 (875)
.+.+ +++...|........ ..|+.++|.++|+++.+. .| +...|..++..+.+.|++++|..++++.. .+
T Consensus 161 ~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~ 236 (308)
T 2ond_A 161 REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCC
Confidence 5532 122222222221111 245555555555555542 12 23345555555555555555555555542 13
Q ss_pred C--CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCC
Q 002834 757 A--DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNI 793 (875)
Q Consensus 757 p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 793 (875)
| ....|..++......|+.+.|..+++++++..|+++
T Consensus 237 p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 2 234555555555555555555555555555555544
No 69
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.26 E-value=4.1e-11 Score=124.75 Aligned_cols=267 Identities=10% Similarity=0.002 Sum_probs=185.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhccC-CC-----cccHHHHHHHhhcCCChHHHHHHHHhhhcC----C-----CccH
Q 002834 495 IGNAILDAYAKCRNIKYAFNVFQSLLEK-RN-----LVTFNPVISGYANCGSADEAFMTFSRIYAR----D-----LTPW 559 (875)
Q Consensus 495 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-p~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~-----~~~~ 559 (875)
.+......+...|++++|...|++.... |+ ...+..+...+...|++++|...++++... + ...+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3445567788999999999999988764 43 356778889999999999999999886332 1 1227
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHCCCC-CCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhc
Q 002834 560 NLMIRVYAENDFPNQALSLFLKLQAQGMK-PDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKC 638 (875)
Q Consensus 560 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 638 (875)
..+...|...|++++|...+++..+.... ++... ...++..+...|...
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------------------------------~~~~~~~l~~~~~~~ 136 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG------------------------------EARALYNLGNVYHAK 136 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH------------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchH------------------------------HHHHHHHHHHHHHHc
Confidence 88889999999999999999887653111 11110 011223333444444
Q ss_pred CC--------------------HHHHHHHhccCCC-----C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-C
Q 002834 639 GS--------------------IFSASKIFQCHPQ-----K----DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGV-N 688 (875)
Q Consensus 639 g~--------------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~ 688 (875)
|+ +++|.+.+++... + ...++..+...+...|++++|+..+++..+... .
T Consensus 137 ~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 216 (338)
T 3ro2_A 137 GKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 216 (338)
T ss_dssp HHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred CcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 44 4555444443221 1 134677788888889999999999888765310 1
Q ss_pred CC----hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC----hhHHHHHHHHhhcCCChHHHHHHHHhCC----CC
Q 002834 689 PD----HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT----PEQYASLVDLLARGGQISDAYSLVNRMP----VE 756 (875)
Q Consensus 689 p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~ 756 (875)
++ ..++..+...+...|++++|.+++++..+...-.++ ...+..++.++...|++++|...++++. ..
T Consensus 217 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 11 236677777889999999999999988763222222 4477888999999999999999988763 11
Q ss_pred CC----HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCC
Q 002834 757 AD----CNVWGTLLGACRIHHEVELGRVVANRLFEMEAD 791 (875)
Q Consensus 757 p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 791 (875)
++ ..++..+...+...|+++.|...+++++++.++
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 12 346778888899999999999999999998765
No 70
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.25 E-value=6.5e-09 Score=115.91 Aligned_cols=425 Identities=11% Similarity=0.019 Sum_probs=254.6
Q ss_pred HHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCC---hhHHHH
Q 002834 334 LKALNLFCELITKEMIWPDSVTLVSLLPACAYLKNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSD---MEAAYR 410 (875)
Q Consensus 334 ~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~ 410 (875)
.+.+..|++.+..+ +-|..+|..++..+.+.+.++.++.+++.++..- |.....|...+..-.+.|. ++.+..
T Consensus 49 ~d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f--P~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF--PLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp SCHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred HHHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 34455555555554 3577788888888888888888888888887763 3333367777777777777 888888
Q ss_pred HHHhcCC-----CCcchHHHHHHHHhccCCh--------hHHHHHHHHHHH-CCC-CCCh-hhHHHHHHHhhccCchhhH
Q 002834 411 TFLMICR-----RDLISWNSMLDAFSESGYN--------SQFLNLLNCMLM-EGI-RPDS-ITILTIIHFCTTVLREGMV 474 (875)
Q Consensus 411 ~~~~~~~-----~~~~~~~~li~~~~~~g~~--------~~a~~~~~~m~~-~g~-~p~~-~t~~~ll~~~~~~~~~~~a 474 (875)
+|++... +++..|...+.-..+.++. +.+.++|+..+. -|. .|++ ..|...+..........
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~-- 202 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVN-- 202 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCS--
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccC--
Confidence 8877633 5566666666544444332 223345554333 344 4433 33444343322110000
Q ss_pred HHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCc---ccHH---HHHHHh----------hcC
Q 002834 475 KETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNL---VTFN---PVISGY----------ANC 538 (875)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~---~~~~---~l~~~~----------~~~ 538 (875)
.+...++++.+.++|+....-|.. .+|. .+...+ -..
T Consensus 203 ---------------------------~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~ 255 (679)
T 4e6h_A 203 ---------------------------KFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELS 255 (679)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHH
T ss_pred ---------------------------cHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhh
Confidence 000122234444444444433311 1111 111000 001
Q ss_pred CChHHHHHHHHhh-------h---cCC---------C----------ccHHHHHHHHHHcCC-------chHHHHHHHHH
Q 002834 539 GSADEAFMTFSRI-------Y---ARD---------L----------TPWNLMIRVYAENDF-------PNQALSLFLKL 582 (875)
Q Consensus 539 ~~~~~A~~~~~~~-------~---~~~---------~----------~~~~~l~~~~~~~~~-------~~~A~~~~~~m 582 (875)
.+++.|...+.++ . +.. + ..|...+..--..+. .+.+..+|++.
T Consensus 256 ~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~a 335 (679)
T 4e6h_A 256 AQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQA 335 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHH
Confidence 1223333333332 1 000 0 014555544333221 23345677777
Q ss_pred HHCCCCCCcchHhcHHHHhhcccchHHHH-HHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC--------
Q 002834 583 QAQGMKPDAVTIMSLLPVCSQMASVHLLR-QCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ-------- 653 (875)
Q Consensus 583 ~~~g~~p~~~~~~~ll~a~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------- 653 (875)
... ..-....+.....-+...|+.+.+. .+++.++...+.+..++-..+....+.|+++.|.++|+++..
T Consensus 336 L~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~ 414 (679)
T 4e6h_A 336 AQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAA 414 (679)
T ss_dssp HHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhh
Confidence 654 2234455666666666778888886 999999887777888888889999999999999999987653
Q ss_pred -----CC------------hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhh-cCcHHHHHHHHH
Q 002834 654 -----KD------------VVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSH-AGLVDEGLEIFR 715 (875)
Q Consensus 654 -----~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~-~g~~~~a~~~~~ 715 (875)
|+ ...|-..+....+.|..+.|..+|.+..+.-..+....|......-.+ .++.+.|.++|+
T Consensus 415 ~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife 494 (679)
T 4e6h_A 415 LMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLE 494 (679)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred hhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 21 236778888888888999999999999875111223333322222223 356899999999
Q ss_pred HhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccC
Q 002834 716 SIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP-VEA----DCNVWGTLLGACRIHHEVELGRVVANRLFEMEA 790 (875)
Q Consensus 716 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 790 (875)
...+.+.- +...+...++.+...|+.+.|..+|+... ..| ....|..++..-..+|+.+.+..+.+++.+..|
T Consensus 495 ~~Lk~~p~--~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 495 LGLKYFAT--DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHHHHTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HHHHHCCC--chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 98885332 34456677787888899999999999874 233 237788888888899999999999999999999
Q ss_pred CCCc
Q 002834 791 DNIG 794 (875)
Q Consensus 791 ~~~~ 794 (875)
+++.
T Consensus 573 ~~~~ 576 (679)
T 4e6h_A 573 EVNK 576 (679)
T ss_dssp TCCH
T ss_pred CCcH
Confidence 8764
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.25 E-value=3.7e-10 Score=115.55 Aligned_cols=211 Identities=10% Similarity=0.004 Sum_probs=165.8
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHhH-------hcCCH-------HHHHHHhccCCC---C-ChhhHHHHHHHHHHc
Q 002834 608 HLLRQCHGYVIRACFDGVRLNGALLHLYA-------KCGSI-------FSASKIFQCHPQ---K-DVVMLTAMIGGYAMH 669 (875)
Q Consensus 608 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~~ 669 (875)
+.+..+++.++...+.++.++..++..+. +.|++ ++|..+|++..+ | +...|..++..+...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 45556666666666667777777776665 34775 899999997544 3 556899999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCChh--hHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhh-cCCChHH
Q 002834 670 GMGKAALKVFSDMLELGVNPDHV--VITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLA-RGGQISD 745 (875)
Q Consensus 670 g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~-~~g~~~~ 745 (875)
|++++|.++|++..+ +.|+.. .|..+...+.+.|++++|.++|+++.+ ..|+ ...|...+.... ..|++++
T Consensus 113 ~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 113 MKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT---STTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred CCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHcCCHHH
Confidence 999999999999998 466543 788888889999999999999999976 3444 345544443322 3799999
Q ss_pred HHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcc---cCC-CCccHHHHHHHHHhcCCchhHHHHHHHH
Q 002834 746 AYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEM---EAD-NIGNYVVMSNLYAADARWDGVVEIRKLM 819 (875)
Q Consensus 746 A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 819 (875)
|.+++++.. ..| ++..|..++..+...|+.+.|+..++++++. .|+ ....|..++..+...|++++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999884 333 6788999999999999999999999999996 553 5668888999999999999999998887
Q ss_pred HhCC
Q 002834 820 KTRD 823 (875)
Q Consensus 820 ~~~~ 823 (875)
.+..
T Consensus 268 ~~~~ 271 (308)
T 2ond_A 268 FTAF 271 (308)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 6643
No 72
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.24 E-value=7.2e-09 Score=115.55 Aligned_cols=423 Identities=11% Similarity=0.048 Sum_probs=266.7
Q ss_pred CCccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCC---hhhHHHHHHHHHhcCCCCchhhH
Q 002834 315 RDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKN---LKVGKEIHGYFLRHPYLEEDAAV 391 (875)
Q Consensus 315 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~ 391 (875)
.|..+|..++..+.+.+.++.+..+|+.+... .+.....|..-+..-.+.++ .+.+..+|+..+.....++...+
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 47889999999999999999999999999987 44555667777777778888 99999999999988743334337
Q ss_pred HHHHHHHHhcCCCh--------hHHHHHHHhcC------CC-CcchHHHHHHHHhc---------cCChhHHHHHHHHHH
Q 002834 392 GNALVSFYAKCSDM--------EAAYRTFLMIC------RR-DLISWNSMLDAFSE---------SGYNSQFLNLLNCML 447 (875)
Q Consensus 392 ~~~li~~~~~~g~~--------~~A~~~~~~~~------~~-~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~ 447 (875)
|...+....+.++. +...++|+... .+ +...|...+.-... +++.+.+..+|++.+
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 77777665555443 33446666531 22 33567666654332 223444555555544
Q ss_pred HCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcc------
Q 002834 448 MEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLE------ 521 (875)
Q Consensus 448 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------ 521 (875)
.. .. .+.+....-+....+. +. ... ...++.- ...+++.|...+.++..
T Consensus 222 ~i----P~-------------~~~~~~w~~Y~~fe~~-~~--~~~---a~~~~~e--~~~~y~~Ar~~~~e~~~~~~~l~ 276 (679)
T 4e6h_A 222 CQ----PM-------------DCLESMWQRYTQWEQD-VN--QLT---ARRHIGE--LSAQYMNARSLYQDWLNITKGLK 276 (679)
T ss_dssp TS----CC-------------SSHHHHHHHHHHHHHH-HC--TTT---HHHHHHH--HHHHHHHHHHHHHHHHHHTTTCC
T ss_pred hC----cc-------------HHHHHHHHHHHHHHHh-cC--cch---HHHHHHH--hhHHHHHHHHHHHHHHHHHHhHh
Confidence 21 01 1122222222222221 10 111 1111111 12244555555544211
Q ss_pred C--CC--------------------cccHHHHHHHhhcCC-------ChHHHHHHHHhhhcCCCcc---HHHHHHHHHHc
Q 002834 522 K--RN--------------------LVTFNPVISGYANCG-------SADEAFMTFSRIYARDLTP---WNLMIRVYAEN 569 (875)
Q Consensus 522 ~--p~--------------------~~~~~~l~~~~~~~~-------~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~ 569 (875)
+ |. ...|...+.--...+ ..+.+..+|+++....+.. |...+..+.+.
T Consensus 277 r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~ 356 (679)
T 4e6h_A 277 RNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEK 356 (679)
T ss_dssp CCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 1 11 022333333222221 1233456777775554433 88888888899
Q ss_pred CCchHHH-HHHHHHHHCCCCCCcc-hHhcHHHHhhcccchHHHHHHHHHHHHhcC----------C------------Cc
Q 002834 570 DFPNQAL-SLFLKLQAQGMKPDAV-TIMSLLPVCSQMASVHLLRQCHGYVIRACF----------D------------GV 625 (875)
Q Consensus 570 ~~~~~A~-~~~~~m~~~g~~p~~~-~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~----------~------------~~ 625 (875)
|+.++|. .+|++.... .|... .+...+......|+++.+..+++.+....+ + ..
T Consensus 357 ~~~~~a~r~il~rAi~~--~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~ 434 (679)
T 4e6h_A 357 NTDSTVITKYLKLGQQC--IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLT 434 (679)
T ss_dssp SCCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchH
Confidence 9999997 999998864 35443 345566677788999999999999887521 1 23
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHhccCCCC-C---hhhHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 002834 626 RLNGALLHLYAKCGSIFSASKIFQCHPQK-D---VVMLTAMIGGYAMH-GMGKAALKVFSDMLELGVNPDHVVITAVLSA 700 (875)
Q Consensus 626 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~---~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a 700 (875)
.+|...+....+.|.++.|+.+|.+..+. . ...|-..+..-.+. ++.+.|..+|+..++. ++-+...+...+.-
T Consensus 435 ~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~f 513 (679)
T 4e6h_A 435 YVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDF 513 (679)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHH
Confidence 46788888888899999999999987643 2 23343333333344 4589999999999986 34455556677777
Q ss_pred HhhcCcHHHHHHHHHHhHHHhCCCCC----hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCCHHHHHHHHHHHH
Q 002834 701 CSHAGLVDEGLEIFRSIEKVQGIKPT----PEQYASLVDLLARGGQISDAYSLVNRMP-VEADCNVWGTLLGACR 770 (875)
Q Consensus 701 ~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~ 770 (875)
....|+.+.|..+|+++.. ..|+ ...|...++.-.+.|..+.+.++.+++. ..|+......+..-|.
T Consensus 514 e~~~~~~~~AR~lferal~---~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f~~ry~ 585 (679)
T 4e6h_A 514 LIYVNEESQVKSLFESSID---KISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEFTNKYK 585 (679)
T ss_dssp HHHHTCHHHHHHHHHHHTT---TSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHHHHHTC
T ss_pred HHhCCCHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHhc
Confidence 7789999999999999876 2332 3478888888889999999999999985 4555545555554443
No 73
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.24 E-value=1.3e-10 Score=108.82 Aligned_cols=160 Identities=13% Similarity=-0.031 Sum_probs=96.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhh
Q 002834 659 LTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLA 738 (875)
Q Consensus 659 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 738 (875)
|..+...+...|++++|+..++++.+. .+.+...+..+...+...|++++|.++++++.+. .+.+...+..++..+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDA-DAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCT-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh-CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 444445555555555555555555442 1223344444555555556666666666555542 1122345555566666
Q ss_pred cCCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHH
Q 002834 739 RGGQISDAYSLVNRMP--VEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIR 816 (875)
Q Consensus 739 ~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 816 (875)
..|++++|.+.++++. .+.+...|..+...+...|+++.|...++++++..|+++..+..++.+|...|++++|.+.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666666665552 23345666666677777777777777777777777777777777777777778888777776
Q ss_pred HHHHh
Q 002834 817 KLMKT 821 (875)
Q Consensus 817 ~~~~~ 821 (875)
+...+
T Consensus 168 ~~~~~ 172 (186)
T 3as5_A 168 KKANE 172 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 74
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.23 E-value=1.1e-10 Score=127.12 Aligned_cols=176 Identities=10% Similarity=-0.007 Sum_probs=154.3
Q ss_pred HHHHHHHhccCCC---CChhhHHHHHHHHHHcCCh-HHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhhcCcHHHHHHHHH
Q 002834 641 IFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMG-KAALKVFSDMLELGVNPD-HVVITAVLSACSHAGLVDEGLEIFR 715 (875)
Q Consensus 641 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~ 715 (875)
+++|...++.... .+...|..+...|...|++ ++|++.|++..+. .|+ ...|..+..+|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5566666654432 4678899999999999999 9999999999985 444 6788888889999999999999999
Q ss_pred HhHHHhCCCCChhHHHHHHHHhhcC---------CChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhc--------CChh
Q 002834 716 SIEKVQGIKPTPEQYASLVDLLARG---------GQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIH--------HEVE 776 (875)
Q Consensus 716 ~~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~--------~~~~ 776 (875)
++.+ +.|+...+..++.+|... |++++|++.+++.. ..| +...|..+..++... |+++
T Consensus 162 ~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9976 678878999999999999 99999999999984 445 578899999999888 9999
Q ss_pred HHHHHHHHHhcccC---CCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 777 LGRVVANRLFEMEA---DNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 777 ~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
.|+..++++++++| +++..|..+|.+|...|++++|++.+++..+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA 286 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999 9999999999999999999999998887654
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.20 E-value=6.9e-10 Score=103.80 Aligned_cols=168 Identities=11% Similarity=-0.035 Sum_probs=143.8
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHh
Q 002834 626 RLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACS 702 (875)
Q Consensus 626 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~ 702 (875)
..+..+...+...|++++|...|+++.+ .+..+|..+...+...|++++|+..++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 4456677889999999999999999876 466789999999999999999999999999852 445677888888999
Q ss_pred hcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHH
Q 002834 703 HAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP--VEADCNVWGTLLGACRIHHEVELGRV 780 (875)
Q Consensus 703 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~ 780 (875)
..|++++|.++++++.+. .+.+...+..++.++...|++++|.+.++++. .+.+...|..+...+...|+.+.|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999873 23346688899999999999999999999874 33456888999999999999999999
Q ss_pred HHHHHhcccCCCCccH
Q 002834 781 VANRLFEMEADNIGNY 796 (875)
Q Consensus 781 ~~~~~~~~~p~~~~~~ 796 (875)
.++++++++|+++...
T Consensus 166 ~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 166 HFKKANELDEGASVEL 181 (186)
T ss_dssp HHHHHHHHHHCCCGGG
T ss_pred HHHHHHHcCCCchhhH
Confidence 9999999999887644
No 76
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.19 E-value=2.8e-10 Score=110.80 Aligned_cols=201 Identities=6% Similarity=-0.009 Sum_probs=105.5
Q ss_pred chHhcHHHHhhcccchHHHHHHHHHHHHhcC-CCchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHH
Q 002834 592 VTIMSLLPVCSQMASVHLLRQCHGYVIRACF-DGVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYA 667 (875)
Q Consensus 592 ~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 667 (875)
..+......+...|+++.|...+..+.+..+ ++...+..+...|.+.|++++|...|++..+ .+..+|..+...|.
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 87 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYR 87 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence 4444444555555666666666666665555 3444444455555555555555555554432 23345555555555
Q ss_pred HcCChHHHHHHHHHHHHCCCCCC-h-------hhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC---hhHHHHHHHH
Q 002834 668 MHGMGKAALKVFSDMLELGVNPD-H-------VVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT---PEQYASLVDL 736 (875)
Q Consensus 668 ~~g~~~~A~~~~~~m~~~g~~p~-~-------~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~ 736 (875)
..|++++|+..+++..+. .|+ . ..|..+...+...|++++|.+.|+++.+ +.|+ ...+..++.+
T Consensus 88 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 88 DMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHHHH
Confidence 555555555555555552 232 2 2244444455555555555555555533 3444 2244455555
Q ss_pred hhcCCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHH
Q 002834 737 LARGGQISDAYSLVNRMP--VEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYA 804 (875)
Q Consensus 737 ~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 804 (875)
|...|+. .++++. ...+...+... .....++++.|...++++++++|+++.....++.+..
T Consensus 163 ~~~~~~~-----~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 163 FYNNGAD-----VLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHH-----HHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHH-----HHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 5443332 111111 01111222111 1223345589999999999999999888877777654
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.19 E-value=1.1e-09 Score=115.89 Aligned_cols=230 Identities=10% Similarity=0.068 Sum_probs=130.5
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHCCCC-CCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhc
Q 002834 560 NLMIRVYAENDFPNQALSLFLKLQAQGMK-PDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKC 638 (875)
Q Consensus 560 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 638 (875)
......+...|++++|+..|++..+.... ++... ...++..+...|...
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------------------------------~a~~~~~lg~~y~~~ 154 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIE------------------------------KAEFHFKVAEAYYHM 154 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHH------------------------------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHH------------------------------HHHHHHHHHHHHHHc
Confidence 34455567788888888888877653211 22110 112233444455555
Q ss_pred CCHHHHHHHhccCCC-----C-----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-ChhhHHHHHHHHhh
Q 002834 639 GSIFSASKIFQCHPQ-----K-----DVVMLTAMIGGYAMHGMGKAALKVFSDMLEL----GVNP-DHVVITAVLSACSH 703 (875)
Q Consensus 639 g~~~~A~~~~~~~~~-----~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~a~~~ 703 (875)
|+++.|...+++..+ + ...+++.+...|...|++++|++.|++..+. +..+ ...++..+..++..
T Consensus 155 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~ 234 (378)
T 3q15_A 155 KQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDR 234 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 555555544443221 1 1235666777777777777777777766542 1111 12345666667777
Q ss_pred cCcHHHHHHHHHHhHHHhC--CCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC----C--CCCH-HHHHHHHHHHHhcC
Q 002834 704 AGLVDEGLEIFRSIEKVQG--IKPT-PEQYASLVDLLARGGQISDAYSLVNRMP----V--EADC-NVWGTLLGACRIHH 773 (875)
Q Consensus 704 ~g~~~~a~~~~~~~~~~~~--~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~--~p~~-~~~~~l~~~~~~~~ 773 (875)
.|++++|.+++++..+... ..|. ..++..++.++.+.|++++|.+.+++.. . .|.. ..+..+...+...+
T Consensus 235 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~ 314 (378)
T 3q15_A 235 SGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETV 314 (378)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSC
T ss_pred CCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC
Confidence 7777777777777655211 2222 3466777777777777777777776652 1 2222 23334444455556
Q ss_pred C---hhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHH
Q 002834 774 E---VELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMK 820 (875)
Q Consensus 774 ~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 820 (875)
+ ++.|...+++. ...|.....+..+|.+|...|++++|.+.+++..
T Consensus 315 ~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 315 DERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6 56666665552 2233344566678888888888888887665553
No 78
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.17 E-value=2e-10 Score=117.99 Aligned_cols=230 Identities=12% Similarity=0.107 Sum_probs=147.6
Q ss_pred chHhcHHHHhhcccchHHHHHHHHHHHHh-------cCC-CchHHHHHHHHhHhcCCHHHHHHHhccCCC----------
Q 002834 592 VTIMSLLPVCSQMASVHLLRQCHGYVIRA-------CFD-GVRLNGALLHLYAKCGSIFSASKIFQCHPQ---------- 653 (875)
Q Consensus 592 ~~~~~ll~a~~~~~~~~~a~~~~~~~~~~-------~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------- 653 (875)
.++..+...+...|+++.|..++..+.+. ..+ ....+..+...|...|++++|...|++...
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34566667777888888888888777764 233 666777788888888888888887776442
Q ss_pred -CChhhHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHh----
Q 002834 654 -KDVVMLTAMIGGYAMHGMGKAALKVFSDMLEL------GVNPD-HVVITAVLSACSHAGLVDEGLEIFRSIEKVQ---- 721 (875)
Q Consensus 654 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~---- 721 (875)
....+|..+...|...|++++|+..++++.+. +..|+ ...+..+...+...|++++|.++++++.+..
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 12346777777888888888888888877763 22232 3346666667778888888888888776631
Q ss_pred -CCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC----------CCCC-HHHH------HHHHHHHHhcCChhHHHHHH
Q 002834 722 -GIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP----------VEAD-CNVW------GTLLGACRIHHEVELGRVVA 782 (875)
Q Consensus 722 -~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p~-~~~~------~~l~~~~~~~~~~~~a~~~~ 782 (875)
+..|. ...+..++.+|...|++++|.+.++++. ..+. ...| ..+...+...+.+..+...+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 11332 3367777888888888888888777652 1111 1112 22223333445566666677
Q ss_pred HHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 783 NRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 783 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
+++....|..+..+..++.+|...|++++|.+.++...+
T Consensus 268 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 268 KACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777777888888999999999999999999998877654
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.15 E-value=9.3e-09 Score=108.64 Aligned_cols=194 Identities=13% Similarity=0.049 Sum_probs=137.2
Q ss_pred HHHHHHHhHhcCCHHHHHHHhccCCC-------C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--C--Chh
Q 002834 628 NGALLHLYAKCGSIFSASKIFQCHPQ-------K----DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVN--P--DHV 692 (875)
Q Consensus 628 ~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~ 692 (875)
...+...+...|++++|...+++... + ...++..+...+...|++++|...+++....... + ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 45566777788888888877775432 1 1235666788888999999999999988764221 1 123
Q ss_pred hHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHH-----HHHHHhhcCCChHHHHHHHHhCC-CCCC-----HHH
Q 002834 693 VITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYA-----SLVDLLARGGQISDAYSLVNRMP-VEAD-----CNV 761 (875)
Q Consensus 693 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~ 761 (875)
++..+...+...|++++|..++++..+...-......+. ..+..+...|++++|..++++.. ..|. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 566677788899999999999998876422211111121 23455778999999999998884 2221 224
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhcccCCCC------ccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 762 WGTLLGACRIHHEVELGRVVANRLFEMEADNI------GNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 762 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
+..+...+...|+.+.|...++++++..+... ..+..++.+|...|++++|.+.++....
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 56777788889999999999999988755422 3667789999999999999997766543
No 80
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.14 E-value=2.7e-10 Score=120.90 Aligned_cols=289 Identities=9% Similarity=-0.017 Sum_probs=212.4
Q ss_pred HHhcCCHHHHHHHHHhhccC-------CCcccHHHHHHH--hhcCCChHHHH-----------HHHHhhhcCCCc--c--
Q 002834 503 YAKCRNIKYAFNVFQSLLEK-------RNLVTFNPVISG--YANCGSADEAF-----------MTFSRIYARDLT--P-- 558 (875)
Q Consensus 503 ~~~~g~~~~A~~~~~~~~~~-------p~~~~~~~l~~~--~~~~~~~~~A~-----------~~~~~~~~~~~~--~-- 558 (875)
+.+.+++++|..+++++... ++...|-.++.. ....+..+.+. +.++.+...... .
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 35789999999999988653 133333333322 11122333333 555555332111 1
Q ss_pred ----HHHHHHHHHHcCCchHHHHHHHHHHHCCC-CCC----cchHhcHHHHhhcccchHHHHHHHHHHHHhcCC------
Q 002834 559 ----WNLMIRVYAENDFPNQALSLFLKLQAQGM-KPD----AVTIMSLLPVCSQMASVHLLRQCHGYVIRACFD------ 623 (875)
Q Consensus 559 ----~~~l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~------ 623 (875)
+......+...|++++|+..|++..+.-. .++ ..++..+...+...|+.+.|...+..+.+....
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 22366778899999999999999876411 122 246777778899999999999999998876433
Q ss_pred -CchHHHHHHHHhHhcCCHHHHHHHhccCCC-----CCh----hhHHHHHHHHHHcCChHHHHHHHHHHHHC----CC-C
Q 002834 624 -GVRLNGALLHLYAKCGSIFSASKIFQCHPQ-----KDV----VMLTAMIGGYAMHGMGKAALKVFSDMLEL----GV-N 688 (875)
Q Consensus 624 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~ 688 (875)
....+..+...|...|++++|...|++..+ ++. .+|+.+...|...|++++|+..+++..+. +. +
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 245778899999999999999999987664 222 47888999999999999999999998872 23 2
Q ss_pred CChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCC--CCC-hhHHHHHHHHhhcCCC---hHHHHHHHHhCCCCCCH-HH
Q 002834 689 PDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGI--KPT-PEQYASLVDLLARGGQ---ISDAYSLVNRMPVEADC-NV 761 (875)
Q Consensus 689 p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~~-~~ 761 (875)
....++..+..++.+.|++++|.+++++..+...- .|. ...+..+...+...|+ +++|+.++++....|+. ..
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~ 341 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDF 341 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHH
Confidence 33556788888999999999999999998763221 122 2346778899999999 99999999998655543 56
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhcccCC
Q 002834 762 WGTLLGACRIHHEVELGRVVANRLFEMEAD 791 (875)
Q Consensus 762 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 791 (875)
+..+...+...|+++.|...+++++++..+
T Consensus 342 ~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 342 AIDVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 778888899999999999999999987654
No 81
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.13 E-value=2.5e-10 Score=117.28 Aligned_cols=240 Identities=13% Similarity=0.095 Sum_probs=150.2
Q ss_pred CcccHHHHHHHhhcCCChHHHHHHHHhhhcC--------CCc---cHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcc
Q 002834 524 NLVTFNPVISGYANCGSADEAFMTFSRIYAR--------DLT---PWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAV 592 (875)
Q Consensus 524 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~---~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 592 (875)
...++..+...+...|++++|...++++... ++. .+..+...|...|++++|+..+++..+....
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---- 101 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK---- 101 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH----
Confidence 3456777788888888888888888777541 111 1677777777788888888777776542100
Q ss_pred hHhcHHHHhhcccchHHHHHHHHHHHHhcCC-CchHHHHHHHHhHhcCCHHHHHHHhccCCC-----------CChhhHH
Q 002834 593 TIMSLLPVCSQMASVHLLRQCHGYVIRACFD-GVRLNGALLHLYAKCGSIFSASKIFQCHPQ-----------KDVVMLT 660 (875)
Q Consensus 593 ~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~ 660 (875)
......+ ....+..+...|...|++++|...|++..+ ....+|.
T Consensus 102 ------------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 157 (311)
T 3nf1_A 102 ------------------------TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLN 157 (311)
T ss_dssp ------------------------HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ------------------------HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 0000001 233445566666777777777766665432 1234677
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHh------CCCCCh
Q 002834 661 AMIGGYAMHGMGKAALKVFSDMLEL------GVNPD-HVVITAVLSACSHAGLVDEGLEIFRSIEKVQ------GIKPTP 727 (875)
Q Consensus 661 ~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~p~~ 727 (875)
.+...|...|++++|++.++++.+. +..|+ ..++..+..++...|++++|.++++++.+.. ...|..
T Consensus 158 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 237 (311)
T 3nf1_A 158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 237 (311)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence 8888899999999999999988764 22333 3457777778999999999999999987631 122221
Q ss_pred -------hHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCC
Q 002834 728 -------EQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEAD 791 (875)
Q Consensus 728 -------~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 791 (875)
..+..+...+...+.+.+|...++... ..| ...+|..+..++...|+++.|...+++++++.|+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 238 KPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 122333344445566666666676664 334 3477888999999999999999999999999886
No 82
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.11 E-value=1.9e-09 Score=107.39 Aligned_cols=190 Identities=11% Similarity=0.000 Sum_probs=120.4
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhH
Q 002834 655 DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPD----HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQ 729 (875)
Q Consensus 655 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~ 729 (875)
+...+..+...+...|++++|+..|+++.+. .|+ ...+..+..++...|++++|...|+++.+.+.-.|. ...
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 3344444555555556666666666665553 222 234444455555566666666666655553222222 224
Q ss_pred HHHHHHHhhc--------CCChHHHHHHHHhCC-CCCC-HHH-----------------HHHHHHHHHhcCChhHHHHHH
Q 002834 730 YASLVDLLAR--------GGQISDAYSLVNRMP-VEAD-CNV-----------------WGTLLGACRIHHEVELGRVVA 782 (875)
Q Consensus 730 ~~~l~~~~~~--------~g~~~~A~~~~~~~~-~~p~-~~~-----------------~~~l~~~~~~~~~~~~a~~~~ 782 (875)
+..++.++.. .|++++|+..++++. ..|+ ... +..+...+...|+++.|+..+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 4455555555 566666665555542 2222 122 256677888999999999999
Q ss_pred HHHhcccCCCC---ccHHHHHHHHHhc----------CCchhHHHHHHHHHhCCCcCCCceeEEEeCCEEeEEecCCCCC
Q 002834 783 NRLFEMEADNI---GNYVVMSNLYAAD----------ARWDGVVEIRKLMKTRDLKKPAACSWIEVERKNNAFMAGDYSH 849 (875)
Q Consensus 783 ~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~ 849 (875)
+++++..|+++ ..+..++.+|... |++++|++.++.+.+.. | .+
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~----p-------------------~~ 228 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF----P-------------------DS 228 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC----T-------------------TC
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC----C-------------------CC
Confidence 99999999865 4788999999977 89999999988876532 2 36
Q ss_pred CChHHHHHHHHHHHHHHHhc
Q 002834 850 PRRDMIYWVLSILDEQIKDQ 869 (875)
Q Consensus 850 ~~~~~~~~~~~~l~~~~~~~ 869 (875)
|...+....+..+...+++.
T Consensus 229 ~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 229 PLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp THHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 77778888888888777663
No 83
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.06 E-value=1.5e-10 Score=103.55 Aligned_cols=140 Identities=7% Similarity=-0.068 Sum_probs=103.3
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCC
Q 002834 664 GGYAMHGMGKAALKVFSDMLELGVNPD-HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGG 741 (875)
Q Consensus 664 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 741 (875)
..+...|++++|++.+++.... .|+ ...+..+...|.+.|++++|.+.|+++.+ +.|+ ...|..++.+|.+.|
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcC
Confidence 3344556777777777776542 333 34455666778888888888888888876 4554 457888888888888
Q ss_pred ChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHH-HHHHHhcccCCCCccHHHHHHHHHhcCC
Q 002834 742 QISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRV-VANRLFEMEADNIGNYVVMSNLYAADAR 808 (875)
Q Consensus 742 ~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 808 (875)
++++|+..+++.. ..| ++.+|..+...+...|+.+.|.+ .++++++++|+++.+|...+.++...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8888888887764 455 46788888888888888866554 4689999999999999999999888885
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.04 E-value=1.2e-09 Score=123.64 Aligned_cols=163 Identities=13% Similarity=0.151 Sum_probs=143.4
Q ss_pred CchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHH
Q 002834 624 GVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPD-HVVITAVLS 699 (875)
Q Consensus 624 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~ 699 (875)
+...++.|...|.+.|++++|++.|++..+ .+..+|+.+..+|.+.|++++|++.|++.++. .|+ ...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 566788899999999999999999998764 45789999999999999999999999999984 565 567888888
Q ss_pred HHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChh
Q 002834 700 ACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVE 776 (875)
Q Consensus 700 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~ 776 (875)
++...|++++|++.|+++.+ +.|+ ...|..++.+|.+.|++++|++.+++.. ..| +...|..+..++...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 99999999999999999987 5676 4589999999999999999999999884 566 4588999999999999999
Q ss_pred HHHHHHHHHhcccCC
Q 002834 777 LGRVVANRLFEMEAD 791 (875)
Q Consensus 777 ~a~~~~~~~~~~~p~ 791 (875)
.|++.+++++++.|+
T Consensus 163 ~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 163 DYDERMKKLVSIVAD 177 (723)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChh
Confidence 999999999988664
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.03 E-value=3.4e-09 Score=107.21 Aligned_cols=185 Identities=6% Similarity=-0.033 Sum_probs=126.7
Q ss_pred HhHhcCCHHHHHHHhccCCC-------C--ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--hhhHHHHHH
Q 002834 634 LYAKCGSIFSASKIFQCHPQ-------K--DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGV---NPD--HVVITAVLS 699 (875)
Q Consensus 634 ~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~~~~~ll~ 699 (875)
.|...|++++|...|++... + ...+|+.+..+|...|++++|+..|++..+... .+. ..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45556666666666554332 1 135788888889999999999999888776311 111 346777888
Q ss_pred HHhhc-CcHHHHHHHHHHhHHHhCCCCC----hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCCH--------HHHHHH
Q 002834 700 ACSHA-GLVDEGLEIFRSIEKVQGIKPT----PEQYASLVDLLARGGQISDAYSLVNRMP-VEADC--------NVWGTL 765 (875)
Q Consensus 700 a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~--------~~~~~l 765 (875)
.|... |++++|+..|++..+...-..+ ..++..++.+|.+.|++++|+..+++.. ..|+. ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88886 9999999999998774221111 3468889999999999999999998873 33322 146677
Q ss_pred HHHHHhcCChhHHHHHHHHHhcccCCCCcc-----HHHHHHHHH--hcCCchhHHHHHHH
Q 002834 766 LGACRIHHEVELGRVVANRLFEMEADNIGN-----YVVMSNLYA--ADARWDGVVEIRKL 818 (875)
Q Consensus 766 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~A~~~~~~ 818 (875)
..++...|+++.|+..++++++++|+.+.. +..++..|. ..+++++|++.++.
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~ 265 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDN 265 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Confidence 777888999999999999999999987654 334555554 34667777777643
No 86
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.01 E-value=1.1e-08 Score=98.84 Aligned_cols=61 Identities=8% Similarity=-0.018 Sum_probs=53.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhcccCCCC---ccHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 002834 764 TLLGACRIHHEVELGRVVANRLFEMEADNI---GNYVVMSNLYAADARWDGVVEIRKLMKTRDL 824 (875)
Q Consensus 764 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 824 (875)
.+...+...|+++.|+..++++++..|+++ ..+..++.+|.+.|++++|++.++.+...+.
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 445667889999999999999999999986 5688999999999999999999999887653
No 87
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.99 E-value=6.4e-09 Score=109.96 Aligned_cols=189 Identities=7% Similarity=-0.037 Sum_probs=145.6
Q ss_pred HHHHHhHhcCCHHHHHHHhccCCC-----CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCC--C---CC-ChhhH
Q 002834 630 ALLHLYAKCGSIFSASKIFQCHPQ-----KD----VVMLTAMIGGYAMHGMGKAALKVFSDMLELG--V---NP-DHVVI 694 (875)
Q Consensus 630 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~---~p-~~~~~ 694 (875)
.....+...|++++|...|++..+ ++ ..++..+...|...|++++|+..+++..+.. . .+ ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344567778899999888886543 22 3578889999999999999999999887631 1 11 13467
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC----hhHHHHHHHHhhcCCChHHHHHHHHhCC------CCCC-HHHHH
Q 002834 695 TAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT----PEQYASLVDLLARGGQISDAYSLVNRMP------VEAD-CNVWG 763 (875)
Q Consensus 695 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~p~-~~~~~ 763 (875)
..+..+|...|++++|.+.|+++.+...-.++ ...+..++.+|...|++++|.+.+++.. ..|. ..++.
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 265 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF 265 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHH
Confidence 77888999999999999999998764322222 3478899999999999999999998873 3343 46778
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhcccCC--C---CccHHHHHHHHHhcCC---chhHHHHHHH
Q 002834 764 TLLGACRIHHEVELGRVVANRLFEMEAD--N---IGNYVVMSNLYAADAR---WDGVVEIRKL 818 (875)
Q Consensus 764 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~---~~~~~~l~~~~~~~g~---~~~A~~~~~~ 818 (875)
.+...+...|+.+.|...+++++++.+. + ...+..++.+|...|+ +.+|+..++.
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~ 328 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK 328 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 8888999999999999999999998654 2 2345678888888898 7777776654
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.99 E-value=2.2e-09 Score=108.32 Aligned_cols=219 Identities=12% Similarity=0.095 Sum_probs=140.5
Q ss_pred cccchHHHHHHHHHHHHh-------cCC-CchHHHHHHHHhHhcCCHHHHHHHhccCCC-----------CChhhHHHHH
Q 002834 603 QMASVHLLRQCHGYVIRA-------CFD-GVRLNGALLHLYAKCGSIFSASKIFQCHPQ-----------KDVVMLTAMI 663 (875)
Q Consensus 603 ~~~~~~~a~~~~~~~~~~-------~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li 663 (875)
..|+++.|...++.+.+. ..+ ...++..+...|...|++++|...|++... ....+|..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 445566666665555542 223 566778888888888888888888876442 1234677788
Q ss_pred HHHHHcCChHHHHHHHHHHHHC------CCCCC-hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHh-----CCCCC-hhHH
Q 002834 664 GGYAMHGMGKAALKVFSDMLEL------GVNPD-HVVITAVLSACSHAGLVDEGLEIFRSIEKVQ-----GIKPT-PEQY 730 (875)
Q Consensus 664 ~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p~-~~~~ 730 (875)
..|...|++++|++.+++..+. .-.|+ ..++..+...+...|++++|.++++++.+.. +..|+ ...+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 8888888888888888887764 11222 4456667778888888888888888887631 11333 3467
Q ss_pred HHHHHHhhcCCChHHHHHHHHhCC----------CCCC-HHHHHHHHHHHHhcCC------hhHHHHHHHHHhcccCCCC
Q 002834 731 ASLVDLLARGGQISDAYSLVNRMP----------VEAD-CNVWGTLLGACRIHHE------VELGRVVANRLFEMEADNI 793 (875)
Q Consensus 731 ~~l~~~~~~~g~~~~A~~~~~~~~----------~~p~-~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~p~~~ 793 (875)
..++.+|.+.|++++|.++++++. ..+. ...|..+.......+. +..+...++......|..+
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVN 252 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHH
Confidence 778888888888888888887652 1222 2334444333333222 2233333333333445556
Q ss_pred ccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 794 GNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 794 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
..+..++.+|...|++++|.+.++...+
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6889999999999999999998887654
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.96 E-value=6.2e-09 Score=105.35 Aligned_cols=212 Identities=11% Similarity=-0.014 Sum_probs=139.7
Q ss_pred ChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHH
Q 002834 540 SADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIR 619 (875)
Q Consensus 540 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~ 619 (875)
++++|...+++. +..|...|++++|+..|.+..+..... ++...
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~---------------~~~~~---------- 75 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKA---------------GNEDE---------- 75 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHT---------------TCHHH----------
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHh---------------CCHHH----------
Confidence 478888887765 556778888888888887765421000 00000
Q ss_pred hcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC-----CC----hhhHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCC
Q 002834 620 ACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ-----KD----VVMLTAMIGGYAMH-GMGKAALKVFSDMLELGVNP 689 (875)
Q Consensus 620 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p 689 (875)
....++.+..+|.+.|++++|+..|++..+ .+ ..+|+.+...|... |++++|+..|++..+. .|
T Consensus 76 ----~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~ 149 (292)
T 1qqe_A 76 ----AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YA 149 (292)
T ss_dssp ----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HH
T ss_pred ----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HH
Confidence 122334455556666666666666654432 11 34678888888886 9999999999988763 22
Q ss_pred C-------hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChh--------HHHHHHHHhhcCCChHHHHHHHHhCC
Q 002834 690 D-------HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPE--------QYASLVDLLARGGQISDAYSLVNRMP 754 (875)
Q Consensus 690 ~-------~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~--------~~~~l~~~~~~~g~~~~A~~~~~~~~ 754 (875)
+ ..++..+...+...|++++|+.+|+++.+ +.|+.. .|..++.++...|++++|...+++..
T Consensus 150 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 150 QDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK---SSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred hCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1 24577788889999999999999999877 333321 56778888999999999999998874
Q ss_pred -CCCCH------HHHHHHHHHHH--hcCChhHHHHHHHHHhcccCCCCccH
Q 002834 755 -VEADC------NVWGTLLGACR--IHHEVELGRVVANRLFEMEADNIGNY 796 (875)
Q Consensus 755 -~~p~~------~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~p~~~~~~ 796 (875)
..|+. ..+..++.++. ..++++.|+..++++++++|.+...+
T Consensus 227 ~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~ 277 (292)
T 1qqe_A 227 SEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITIL 277 (292)
T ss_dssp CC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHH
T ss_pred hhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHH
Confidence 45542 12344555554 34678888888888888888654333
No 90
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.95 E-value=1.1e-09 Score=98.03 Aligned_cols=121 Identities=10% Similarity=-0.010 Sum_probs=101.2
Q ss_pred HHHHHhhcCcHHHHHHHHHHhHHHhCCCCCh-hHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcC
Q 002834 697 VLSACSHAGLVDEGLEIFRSIEKVQGIKPTP-EQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHH 773 (875)
Q Consensus 697 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~ 773 (875)
|...+...|++++|++.++.... ..|+. ..+..++.+|.+.|++++|++.+++.. ..| ++.+|..+..++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 34466778999999999988744 45543 367789999999999999999999985 555 5688999999999999
Q ss_pred ChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHH-HHHHH
Q 002834 774 EVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEI-RKLMK 820 (875)
Q Consensus 774 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~ 820 (875)
+++.|+..++++++++|+++.++..+|.+|...|++++|.+. +++..
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al 127 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAA 127 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988775 45443
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.94 E-value=8.1e-09 Score=102.72 Aligned_cols=190 Identities=9% Similarity=-0.042 Sum_probs=140.7
Q ss_pred CchHHHHHHHHhHhcCCHHHHHHHhccCCC--C-C---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC-hhhHH
Q 002834 624 GVRLNGALLHLYAKCGSIFSASKIFQCHPQ--K-D---VVMLTAMIGGYAMHGMGKAALKVFSDMLELGV-NPD-HVVIT 695 (875)
Q Consensus 624 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~~~~ 695 (875)
+...+..+...+.+.|++++|...|+++.+ | + ..+|..+..+|...|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 455566677788889999999999998765 3 3 56788888999999999999999999988521 112 33456
Q ss_pred HHHHHHhh--------cCcHHHHHHHHHHhHHHhCCCCChh-HH--------------HHHHHHhhcCCChHHHHHHHHh
Q 002834 696 AVLSACSH--------AGLVDEGLEIFRSIEKVQGIKPTPE-QY--------------ASLVDLLARGGQISDAYSLVNR 752 (875)
Q Consensus 696 ~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~p~~~-~~--------------~~l~~~~~~~g~~~~A~~~~~~ 752 (875)
.+..++.. .|++++|...|+++.+.+.-.+... .. ..++.+|.+.|++++|+..+++
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 66667777 8999999999999987432222221 11 5678999999999999999988
Q ss_pred CC-CCCC----HHHHHHHHHHHHhc----------CChhHHHHHHHHHhcccCCCCc---cHHHHHHHHHhcCCchhHH
Q 002834 753 MP-VEAD----CNVWGTLLGACRIH----------HEVELGRVVANRLFEMEADNIG---NYVVMSNLYAADARWDGVV 813 (875)
Q Consensus 753 ~~-~~p~----~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~ 813 (875)
+. ..|+ ...+..+..++... |+++.|+..++++++..|+++. ....++.++...|+++++.
T Consensus 174 ~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 174 VFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp HHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 73 3343 35677777777755 8899999999999999999874 4455666666655555443
No 92
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.91 E-value=2.5e-09 Score=121.86 Aligned_cols=188 Identities=13% Similarity=0.040 Sum_probs=98.9
Q ss_pred hcccchHHHHHHHHHHH--------HhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcC
Q 002834 602 SQMASVHLLRQCHGYVI--------RACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHG 670 (875)
Q Consensus 602 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 670 (875)
...|+.++|.+.++.+. +..+.+...+..+...|.+.|++++|...|++..+ .+...|..+..+|...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 45566666666666665 43444555555666666666666666666655443 34455555666666666
Q ss_pred ChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHH
Q 002834 671 MGKAALKVFSDMLELGVNP-DHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYS 748 (875)
Q Consensus 671 ~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 748 (875)
++++|++.|++..+. .| +...+..+..++.+.|++++ .+.|+++.+ +.|+ ...|..++.+|.+.|++++|++
T Consensus 482 ~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 482 DYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWS---TNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp CHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH---hCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 666666666666553 33 23444555555666666666 666665554 3343 3355556666666666666666
Q ss_pred HHHhCC-CCCCH-HHHHHHHHHHHhcCC-----hhHHHHHHHHHhcccCCCCcc
Q 002834 749 LVNRMP-VEADC-NVWGTLLGACRIHHE-----VELGRVVANRLFEMEADNIGN 795 (875)
Q Consensus 749 ~~~~~~-~~p~~-~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~p~~~~~ 795 (875)
.++++. ..|+. ..|..+..++...++ .+...++.+.+.++.+.++..
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~ 609 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRV 609 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTH
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHH
Confidence 666553 44442 444444444443333 233334444444444444443
No 93
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.90 E-value=4.1e-07 Score=95.88 Aligned_cols=195 Identities=10% Similarity=-0.037 Sum_probs=105.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccC---------C-CcccHHHHHHHhhcCCChHHHHHHHHhhhcCCC--------c
Q 002834 496 GNAILDAYAKCRNIKYAFNVFQSLLEK---------R-NLVTFNPVISGYANCGSADEAFMTFSRIYARDL--------T 557 (875)
Q Consensus 496 ~~~li~~~~~~g~~~~A~~~~~~~~~~---------p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--------~ 557 (875)
+..+...+...|++++|...+++.... | ....+..+...+...|++++|...+++...... .
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 344555666667777776666655431 1 112333444555555666666655555422111 1
Q ss_pred cHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcc-hHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhH
Q 002834 558 PWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAV-TIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYA 636 (875)
Q Consensus 558 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 636 (875)
.+..+...+...|++++|...+++.......++.. .+.. ......+..+.
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~ 226 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS-----------------------------NANKVRVIYWQ 226 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH-----------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHH-----------------------------HHHHHHHHHHH
Confidence 14455555566666666666665554321111110 0000 00012334466
Q ss_pred hcCCHHHHHHHhccCCCCC-------hhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCChh-hHHHHHHHHhhc
Q 002834 637 KCGSIFSASKIFQCHPQKD-------VVMLTAMIGGYAMHGMGKAALKVFSDMLEL----GVNPDHV-VITAVLSACSHA 704 (875)
Q Consensus 637 ~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~-~~~~ll~a~~~~ 704 (875)
..|++++|...+++...++ ...+..+...+...|++++|...+++.... |..++.. .+..+..++...
T Consensus 227 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 306 (373)
T 1hz4_A 227 MTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQA 306 (373)
T ss_dssp HTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHh
Confidence 7888888888888766522 124556677777888888888888776542 2112222 344445567777
Q ss_pred CcHHHHHHHHHHhHH
Q 002834 705 GLVDEGLEIFRSIEK 719 (875)
Q Consensus 705 g~~~~a~~~~~~~~~ 719 (875)
|+.++|...+++...
T Consensus 307 g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 307 GRKSDAQRVLLDALK 321 (373)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 888888877777655
No 94
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.89 E-value=1.6e-08 Score=101.77 Aligned_cols=168 Identities=7% Similarity=-0.050 Sum_probs=132.5
Q ss_pred HHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCC
Q 002834 646 KIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPD-HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIK 724 (875)
Q Consensus 646 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 724 (875)
+.+......+...+..+...+...|++++|+..|++..+. .|+ ...+..+..++...|++++|...++++.. ..
T Consensus 107 ~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~---~~ 181 (287)
T 3qou_A 107 ALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL---QD 181 (287)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG---GG
T ss_pred HHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch---hh
Confidence 3333333344556777888888999999999999999884 454 55677778899999999999999998865 45
Q ss_pred CChhH-HHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCC--CccHHHH
Q 002834 725 PTPEQ-YASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADN--IGNYVVM 799 (875)
Q Consensus 725 p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l 799 (875)
|+... .......+.+.|+.++|.+.+++.. ..| +...+..+..++...|+++.|+..++++++.+|++ +..+..|
T Consensus 182 p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l 261 (287)
T 3qou_A 182 QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTF 261 (287)
T ss_dssp CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHH
T ss_pred cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHH
Confidence 66543 2333344667788888888887764 445 56889999999999999999999999999999998 7889999
Q ss_pred HHHHHhcCCchhHHHHHHH
Q 002834 800 SNLYAADARWDGVVEIRKL 818 (875)
Q Consensus 800 ~~~~~~~g~~~~A~~~~~~ 818 (875)
+.+|...|+.++|...+++
T Consensus 262 ~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 262 QEILAALGTGDALASXYRR 280 (287)
T ss_dssp HHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHcCCCCcHHHHHHH
Confidence 9999999999999986544
No 95
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.89 E-value=1.4e-07 Score=92.74 Aligned_cols=164 Identities=8% Similarity=-0.004 Sum_probs=102.5
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCC-----Ch
Q 002834 654 KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNP-DHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKP-----TP 727 (875)
Q Consensus 654 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-----~~ 727 (875)
++..++..+..++...|++++|++++.+.+..|..+ +...+...+..+.+.|+.+.|.+.+++|.+ ..| +.
T Consensus 98 ~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~---~~~d~~~~~d 174 (310)
T 3mv2_B 98 NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN---AIEDTVSGDN 174 (310)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCccccccch
Confidence 344445566677777778888888777776544312 334455566677777888888888877765 455 23
Q ss_pred hHHHHHHHH--hhc--CCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcc----------cCCC
Q 002834 728 EQYASLVDL--LAR--GGQISDAYSLVNRMP-VEADCNVWGTLLGACRIHHEVELGRVVANRLFEM----------EADN 792 (875)
Q Consensus 728 ~~~~~l~~~--~~~--~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~p~~ 792 (875)
.+...++.+ ... .+++++|..+|+++. ..|+...-..+++++...|+++.|++.++++.++ +|+|
T Consensus 175 ~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~ 254 (310)
T 3mv2_B 175 EMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYK 254 (310)
T ss_dssp HHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSH
T ss_pred HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCC
Confidence 344444433 222 337778887777774 3344222233444666778888888888777766 4667
Q ss_pred CccHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 002834 793 IGNYVVMSNLYAADARWDGVVEIRKLMKTR 822 (875)
Q Consensus 793 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 822 (875)
+.++..++.+....|+ +|.+++.+++..
T Consensus 255 ~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 255 PTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 7777666666666676 777777777653
No 96
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.89 E-value=5.3e-08 Score=92.89 Aligned_cols=161 Identities=6% Similarity=-0.076 Sum_probs=134.3
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcC----cHHHHHHHHHHhHHHhCCCCChhH
Q 002834 654 KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAG----LVDEGLEIFRSIEKVQGIKPTPEQ 729 (875)
Q Consensus 654 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g----~~~~a~~~~~~~~~~~~~~p~~~~ 729 (875)
.++.++..+...|...+++++|+.+|++..+.| +...+..+...|.. + +.++|.++|++..+ . -+...
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~-~---g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE-A---GSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH-T---TCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH-C---CCHHH
Confidence 467788888899999999999999999998865 45666667777777 6 89999999999966 2 24567
Q ss_pred HHHHHHHhhc----CCChHHHHHHHHhCCC-CCC---HHHHHHHHHHHHh----cCChhHHHHHHHHHhcccCCCCccHH
Q 002834 730 YASLVDLLAR----GGQISDAYSLVNRMPV-EAD---CNVWGTLLGACRI----HHEVELGRVVANRLFEMEADNIGNYV 797 (875)
Q Consensus 730 ~~~l~~~~~~----~g~~~~A~~~~~~~~~-~p~---~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~ 797 (875)
+..|..+|.. .+++++|++++++... .|. +..+..|...+.. .+|.++|+..++++.++ |.++..+.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 8888888887 8899999999999863 342 7888888888887 78999999999999998 77888999
Q ss_pred HHHHHHHhc-C-----CchhHHHHHHHHHhCC
Q 002834 798 VMSNLYAAD-A-----RWDGVVEIRKLMKTRD 823 (875)
Q Consensus 798 ~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 823 (875)
.|+.+|... | ++++|.+.+++..+.|
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 999999864 3 8999999988877655
No 97
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.88 E-value=1.6e-08 Score=88.41 Aligned_cols=128 Identities=16% Similarity=0.217 Sum_probs=72.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHh
Q 002834 658 MLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLL 737 (875)
Q Consensus 658 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 737 (875)
+|..+...+...|++++|+.+++++.+.+ +.+...+..+...+...|++++|..+++++.+. .|
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~------------ 66 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DP------------ 66 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CT------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---CC------------
Confidence 45555666666666666666666665532 223444555555555566666666666555441 12
Q ss_pred hcCCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHH
Q 002834 738 ARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRK 817 (875)
Q Consensus 738 ~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 817 (875)
.+...|..+...+...|+++.|...++++++..|+++..+..++.+|...|++++|.+.++
T Consensus 67 -------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 67 -------------------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp -------------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred -------------------CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 2233444455555555566666666666666666666666666666666666666666655
Q ss_pred HHH
Q 002834 818 LMK 820 (875)
Q Consensus 818 ~~~ 820 (875)
.+.
T Consensus 128 ~~~ 130 (136)
T 2fo7_A 128 KAL 130 (136)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 98
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.88 E-value=4.6e-08 Score=85.45 Aligned_cols=124 Identities=17% Similarity=0.160 Sum_probs=94.9
Q ss_pred HHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhh
Q 002834 627 LNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSH 703 (875)
Q Consensus 627 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~ 703 (875)
.+..++..|...|++++|...|+++.+ .+...|..+...+...|++++|+..++++.+.+ +.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 567788999999999999999997653 467788999999999999999999999998863 4456677777888889
Q ss_pred cCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhC
Q 002834 704 AGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRM 753 (875)
Q Consensus 704 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 753 (875)
.|++++|.++++++.+. .+.+...+..++.++.+.|++++|.+.++++
T Consensus 82 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 99999999999888762 1223445555666666666666665555543
No 99
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.83 E-value=1.5e-08 Score=93.66 Aligned_cols=155 Identities=9% Similarity=-0.010 Sum_probs=94.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHH-h
Q 002834 660 TAMIGGYAMHGMGKAALKVFSDMLELGVNP-DHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDL-L 737 (875)
Q Consensus 660 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~ 737 (875)
..+...+...|++++|+..|++..+. .| +...+..+..++...|++++|...|+++.+ ..|+...+..+... +
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~---~~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPL---EYQDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG---GGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh---ccCChHHHHHHHHHHH
Confidence 33444555555555555555555442 22 233444455555566666666666655543 22222222111111 1
Q ss_pred hcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCC--CccHHHHHHHHHhcCCchhHH
Q 002834 738 ARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADN--IGNYVVMSNLYAADARWDGVV 813 (875)
Q Consensus 738 ~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~ 813 (875)
...+...+|++.+++.. ..| +...|..+..++...|+++.|+..++++++.+|+. +..+..++.+|...|+.++|.
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 11122233555555543 345 46788888888889999999999999999999875 558889999999999999999
Q ss_pred HHHHHH
Q 002834 814 EIRKLM 819 (875)
Q Consensus 814 ~~~~~~ 819 (875)
..+++.
T Consensus 165 ~~y~~a 170 (176)
T 2r5s_A 165 SKYRRQ 170 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 976654
No 100
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.83 E-value=1.2e-08 Score=90.34 Aligned_cols=100 Identities=10% Similarity=-0.003 Sum_probs=87.1
Q ss_pred CCCCCh-hHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHH
Q 002834 722 GIKPTP-EQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVV 798 (875)
Q Consensus 722 ~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 798 (875)
.+.|+. ..+..++..+.+.|++++|++.++++. ..| ++..|..+..++...|+++.|+..++++++++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 355653 477788888999999999999998885 455 67889999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchhHHHHHHHHHh
Q 002834 799 MSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 799 l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
+|.+|...|++++|++.+++..+
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999998877765
No 101
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.82 E-value=5.5e-08 Score=110.81 Aligned_cols=167 Identities=8% Similarity=-0.067 Sum_probs=93.1
Q ss_pred HhcCCHHHHHHHhccCC--------C---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhc
Q 002834 636 AKCGSIFSASKIFQCHP--------Q---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHA 704 (875)
Q Consensus 636 ~~~g~~~~A~~~~~~~~--------~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~ 704 (875)
...|++++|++.|++.. + .+...|..+...|...|++++|+..|++..+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 44566666666665543 1 234455556666666666666666666665531 22334455555566666
Q ss_pred CcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHH
Q 002834 705 GLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVV 781 (875)
Q Consensus 705 g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 781 (875)
|++++|.+.|+++.+ +.|+ ...|..++.+|.+.|++++ ++.++++. ..| +...|..+..++...|+++.|+..
T Consensus 481 g~~~~A~~~~~~al~---l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD---TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666655 3343 3355566666666666666 65555553 333 345566666666666666666666
Q ss_pred HHHHhcccCCCCccHHHHHHHHHhcC
Q 002834 782 ANRLFEMEADNIGNYVVMSNLYAADA 807 (875)
Q Consensus 782 ~~~~~~~~p~~~~~~~~l~~~~~~~g 807 (875)
++++++++|+++.++..++.+|...|
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC---
T ss_pred HHhhcccCcccHHHHHHHHHHHHccC
Confidence 66666666666666666666655443
No 102
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.80 E-value=2.5e-07 Score=92.26 Aligned_cols=209 Identities=10% Similarity=0.072 Sum_probs=140.6
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHhHhcC--CHHHHHHHhccCCC---CChhhHHHHHHHH----HHc---CChHHHH
Q 002834 609 LLRQCHGYVIRACFDGVRLNGALLHLYAKCG--SIFSASKIFQCHPQ---KDVVMLTAMIGGY----AMH---GMGKAAL 676 (875)
Q Consensus 609 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~----~~~---g~~~~A~ 676 (875)
++....+.++..++....+++.-...+...| +++++++.++.+.. .+..+|+.-...+ ... +++++++
T Consensus 51 ~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL 130 (306)
T 3dra_A 51 RALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREF 130 (306)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHH
T ss_pred HHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHH
Confidence 3444444444444444445555555555555 66777766666553 3445666554444 444 6788888
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHhhcCcHH--HHHHHHHHhHHHhCCCC-ChhHHHHHHHHhhcCCC------hHHHH
Q 002834 677 KVFSDMLELGVNPDHVVITAVLSACSHAGLVD--EGLEIFRSIEKVQGIKP-TPEQYASLVDLLARGGQ------ISDAY 747 (875)
Q Consensus 677 ~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~--~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~------~~~A~ 747 (875)
++++++.+.. +-|...|..-.-.+.+.|.++ +++++++++.+ ..| +...|.....++.+.|+ +++++
T Consensus 131 ~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~---~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl 206 (306)
T 3dra_A 131 DILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID---TDLKNNSAWSHRFFLLFSKKHLATDNTIDEEL 206 (306)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccccchhhhHHHHH
Confidence 8888888752 345566666666666777777 88888888877 334 34466666666666666 78888
Q ss_pred HHHHhCC-CCC-CHHHHHHHHHHHHhcCC-hhHHHHHHHHHhccc---CCCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 748 SLVNRMP-VEA-DCNVWGTLLGACRIHHE-VELGRVVANRLFEME---ADNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 748 ~~~~~~~-~~p-~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
++++++. ..| |..+|+.+...+...|+ .+.....++++++++ |.++.++..++.+|.+.|+.++|+++++.+.+
T Consensus 207 ~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 207 NYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 8887764 344 66888888888877766 444667788887776 77778888888888888888899988888765
No 103
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.80 E-value=2.7e-08 Score=85.53 Aligned_cols=91 Identities=9% Similarity=0.065 Sum_probs=45.8
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhc
Q 002834 729 QYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAAD 806 (875)
Q Consensus 729 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 806 (875)
.+...+..|.+.|++++|++.+++.. ..| ++.+|..+..++...|+++.|+..++++++++|+++.+|..+|.+|...
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 34444455555555555555554442 222 3344555555555555555555555555555555555555555555555
Q ss_pred CCchhHHHHHHHH
Q 002834 807 ARWDGVVEIRKLM 819 (875)
Q Consensus 807 g~~~~A~~~~~~~ 819 (875)
|++++|++.+++.
T Consensus 95 ~~~~~A~~~~~~a 107 (126)
T 4gco_A 95 REWSKAQRAYEDA 107 (126)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 5555555544443
No 104
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.80 E-value=3.7e-08 Score=93.75 Aligned_cols=154 Identities=10% Similarity=0.005 Sum_probs=109.7
Q ss_pred HHhHhcCCHHHHHHHhccCCC--C-ChhhHHH----------------HHHHHHHcCChHHHHHHHHHHHHCCCCC-Chh
Q 002834 633 HLYAKCGSIFSASKIFQCHPQ--K-DVVMLTA----------------MIGGYAMHGMGKAALKVFSDMLELGVNP-DHV 692 (875)
Q Consensus 633 ~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~----------------li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ 692 (875)
..+...|++++|...|++... | +...|.. +..+|...|++++|+..|++..+. .| +..
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~ 89 (208)
T 3urz_A 12 SAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--APNNVD 89 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHH
Confidence 344556666666666665543 2 2234444 888899999999999999999885 45 456
Q ss_pred hHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCC--hHHHHHHHHhCCCCCCH--HHHHHHHH
Q 002834 693 VITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQ--ISDAYSLVNRMPVEADC--NVWGTLLG 767 (875)
Q Consensus 693 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~p~~--~~~~~l~~ 767 (875)
.+..+..++...|++++|.+.|+++.+ +.|+ ...+..++.+|...|. .+++...++... .|++ ..|..+..
T Consensus 90 ~~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~ 165 (208)
T 3urz_A 90 CLEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYARYRDGL 165 (208)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHH
Confidence 777788889999999999999999987 5565 4588888888866654 345566666654 3443 34455556
Q ss_pred HHHhcCChhHHHHHHHHHhcccCCC
Q 002834 768 ACRIHHEVELGRVVANRLFEMEADN 792 (875)
Q Consensus 768 ~~~~~~~~~~a~~~~~~~~~~~p~~ 792 (875)
++...|+++.|+..++++++++|++
T Consensus 166 ~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 166 SKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCH
Confidence 6677889999999999999999964
No 105
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.77 E-value=4.1e-08 Score=84.37 Aligned_cols=114 Identities=10% Similarity=0.024 Sum_probs=91.2
Q ss_pred CCCCh-hhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHH
Q 002834 687 VNPDH-VVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVW 762 (875)
Q Consensus 687 ~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~ 762 (875)
+.|+. ..+......+.+.|++++|++.|+++.+ +.|+ ...|..++.+|.+.|++++|++.+++.. ..| +...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK---RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 34443 3456667788888888888888888876 3454 5578888888888888888888888774 444 56889
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHH
Q 002834 763 GTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLY 803 (875)
Q Consensus 763 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 803 (875)
..+..++...|+++.|+..++++++++|+++.++..|++++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999999999888887653
No 106
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.77 E-value=4.1e-07 Score=92.64 Aligned_cols=154 Identities=8% Similarity=0.010 Sum_probs=101.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC----hh
Q 002834 658 MLTAMIGGYAMHGMGKAALKVFSDMLELGV---NPD--HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT----PE 728 (875)
Q Consensus 658 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 728 (875)
+|+.+...|...|++++|+..|++..+.-. .|. ..++..+...|.. |++++|++.|++..+...-..+ ..
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 355666677777777777777777654210 121 2456667777777 8899998888888763211111 34
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHhCC-C---CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCcc-----
Q 002834 729 QYASLVDLLARGGQISDAYSLVNRMP-V---EAD----CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGN----- 795 (875)
Q Consensus 729 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~----- 795 (875)
++..++.+|.+.|++++|++.+++.. . .++ ...+..+..++...|+++.|...+++++ ++|.....
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~ 235 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAA 235 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHH
Confidence 77788888999999999998888763 1 121 1245555566667799999999999999 88876654
Q ss_pred HHHHHHHHHhcCCchhHHH
Q 002834 796 YVVMSNLYAADARWDGVVE 814 (875)
Q Consensus 796 ~~~l~~~~~~~g~~~~A~~ 814 (875)
...++..| ..|+.+++.+
T Consensus 236 l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 236 LEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHH-HhcCHHHHHH
Confidence 23344444 4666655555
No 107
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.77 E-value=1e-07 Score=95.94 Aligned_cols=165 Identities=11% Similarity=0.063 Sum_probs=108.4
Q ss_pred chHHHHHHHHhHhcCCHHHHHHHhccCCC-----------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHC------CC
Q 002834 625 VRLNGALLHLYAKCGSIFSASKIFQCHPQ-----------KDVVMLTAMIGGYAMHGMGKAALKVFSDMLEL------GV 687 (875)
Q Consensus 625 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 687 (875)
..++..+...|...|++++|...|++... ....+|..+...|...|++++|+..+++..+. +-
T Consensus 85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 164 (283)
T 3edt_B 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD 164 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 34555666677777777777777765432 12457788888999999999999999988874 11
Q ss_pred CCC-hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHh------CCCCCh-hHHHHHHHHhhcC------CChHHHHHHHHhC
Q 002834 688 NPD-HVVITAVLSACSHAGLVDEGLEIFRSIEKVQ------GIKPTP-EQYASLVDLLARG------GQISDAYSLVNRM 753 (875)
Q Consensus 688 ~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~p~~-~~~~~l~~~~~~~------g~~~~A~~~~~~~ 753 (875)
.|+ ..++..+..++...|++++|.++++++.+.. ...+.. ..+..+...+... ..+.++..+++..
T Consensus 165 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (283)
T 3edt_B 165 DPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKAC 244 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CC
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc
Confidence 333 4567778889999999999999999987631 123332 2444444444433 3355555556655
Q ss_pred C-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhccc
Q 002834 754 P-VEAD-CNVWGTLLGACRIHHEVELGRVVANRLFEME 789 (875)
Q Consensus 754 ~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 789 (875)
. ..|+ ..++..+..++...|+++.|...++++++..
T Consensus 245 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 245 KVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 4 2333 3678888899999999999999999998753
No 108
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.77 E-value=1.4e-08 Score=90.41 Aligned_cols=99 Identities=13% Similarity=-0.006 Sum_probs=80.5
Q ss_pred CCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHH
Q 002834 723 IKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVM 799 (875)
Q Consensus 723 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 799 (875)
+.|+ ...+..++..+.+.|++++|+..+++.. ..| ++..|..+..++...|+++.|+..++++++++|+++..+..+
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 95 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHA 95 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 4554 3466777888888888888888888774 344 667888888888888999999999999999999999999999
Q ss_pred HHHHHhcCCchhHHHHHHHHHh
Q 002834 800 SNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 800 ~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
|.+|...|++++|++.+++..+
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999998776654
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.77 E-value=6.9e-08 Score=108.23 Aligned_cols=158 Identities=13% Similarity=0.059 Sum_probs=123.3
Q ss_pred cCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhhcCcHHHHHHH
Q 002834 638 CGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNP-DHVVITAVLSACSHAGLVDEGLEI 713 (875)
Q Consensus 638 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~ 713 (875)
.|++++|.+.|++..+ .+...|..+...|...|++++|++.|++..+. .| +...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4678888888888765 35678999999999999999999999999985 44 466778888899999999999999
Q ss_pred HHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhc---CChhHHHHHHHHHhc
Q 002834 714 FRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIH---HEVELGRVVANRLFE 787 (875)
Q Consensus 714 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~ 787 (875)
+++..+ ..|+ ...+..++.+|.+.|++++|.+.+++.. ..| +...+..+..++... |+.+.|.+.++++++
T Consensus 80 ~~~al~---~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASD---AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHh---cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 999987 3454 5688999999999999999999999874 444 568888899999999 999999999999999
Q ss_pred ccCCCCccHHHHH
Q 002834 788 MEADNIGNYVVMS 800 (875)
Q Consensus 788 ~~p~~~~~~~~l~ 800 (875)
.+|++...+..++
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9999998887776
No 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.76 E-value=4e-08 Score=110.12 Aligned_cols=149 Identities=13% Similarity=0.022 Sum_probs=114.7
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHH
Q 002834 669 HGMGKAALKVFSDMLELGVNPD-HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDA 746 (875)
Q Consensus 669 ~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 746 (875)
.|++++|++.|++..+. .|+ ...+..+...+...|++++|.+.+++..+ ..|+ ...+..++.+|...|++++|
T Consensus 2 ~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA---LHPGHPEAVARLGRVRWTQQRHAEA 76 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TSTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 47889999999998874 444 66788888899999999999999999976 5665 55899999999999999999
Q ss_pred HHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhc---CCchhHHHHHHHHHh
Q 002834 747 YSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAAD---ARWDGVVEIRKLMKT 821 (875)
Q Consensus 747 ~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~ 821 (875)
.+.+++.. ..| +...|..+..++...|+++.|++.++++++++|+++..+..++.+|... |++++|.+.+++..+
T Consensus 77 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 77 AVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 99999874 444 5688999999999999999999999999999999999999999999999 999999997776644
Q ss_pred C
Q 002834 822 R 822 (875)
Q Consensus 822 ~ 822 (875)
.
T Consensus 157 ~ 157 (568)
T 2vsy_A 157 Q 157 (568)
T ss_dssp H
T ss_pred c
Confidence 3
No 111
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.73 E-value=3e-07 Score=90.46 Aligned_cols=164 Identities=11% Similarity=0.039 Sum_probs=121.9
Q ss_pred HHHHHHHHhHhcCCHHHHHHHhccCCC-----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-----ChhhHHH
Q 002834 627 LNGALLHLYAKCGSIFSASKIFQCHPQ-----KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNP-----DHVVITA 696 (875)
Q Consensus 627 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~~~~~ 696 (875)
....+..+|...|++++|++++.+... .+...+-.++..+.+.|+.+.|.+.+++|.+ ..| +..+...
T Consensus 102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~~~d~~~~~d~~l~~ 179 (310)
T 3mv2_B 102 ELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--AIEDTVSGDNEMILN 179 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCccccccchHHHHH
Confidence 334666778888999999888887633 2456777888999999999999999999988 467 3566666
Q ss_pred HHHH--HhhcC--cHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCCC-----------CC-CHH
Q 002834 697 VLSA--CSHAG--LVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMPV-----------EA-DCN 760 (875)
Q Consensus 697 ll~a--~~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~p-~~~ 760 (875)
+..+ ....| +..+|..+|+++.+ -.|+......+..++.+.|++++|.+.++.+.. .| ++.
T Consensus 180 Laea~v~l~~g~~~~q~A~~~f~El~~---~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~ 256 (310)
T 3mv2_B 180 LAESYIKFATNKETATSNFYYYEELSQ---TFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPT 256 (310)
T ss_dssp HHHHHHHHHHTCSTTTHHHHHHHHHHT---TSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHH---hCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHH
Confidence 6665 33334 89999999999865 345533333444488999999999999876531 24 456
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHH
Q 002834 761 VWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYV 797 (875)
Q Consensus 761 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 797 (875)
+..+++......|+ .|.+.++++.+..|++|....
T Consensus 257 ~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 257 FLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp HHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred HHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 66677666666776 789999999999999986543
No 112
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.72 E-value=9e-08 Score=88.28 Aligned_cols=156 Identities=11% Similarity=-0.042 Sum_probs=119.0
Q ss_pred HHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH-Hh
Q 002834 627 LNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSA-CS 702 (875)
Q Consensus 627 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a-~~ 702 (875)
....+...+...|++++|...|++..+ .+...|..+...+...|++++|+..|++.... .|+...+...... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHH
Confidence 344566778889999999999998886 46678999999999999999999999988764 3443332222111 22
Q ss_pred hcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCC---HHHHHHHHHHHHhcCChhH
Q 002834 703 HAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEAD---CNVWGTLLGACRIHHEVEL 777 (875)
Q Consensus 703 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~---~~~~~~l~~~~~~~~~~~~ 777 (875)
..+...+|.+.+++..+ ..|+ ...+..++.++...|++++|...++++. ..|+ ...|..+..++...|+.+.
T Consensus 86 ~~~~~~~a~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 86 QQAAESPELKRLEQELA---ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHTSCHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred hhcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 22233457888888877 4565 5688889999999999999999998873 5554 4688899999999999999
Q ss_pred HHHHHHHHhc
Q 002834 778 GRVVANRLFE 787 (875)
Q Consensus 778 a~~~~~~~~~ 787 (875)
|...+++++.
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 113
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.71 E-value=1.5e-07 Score=90.01 Aligned_cols=128 Identities=13% Similarity=-0.048 Sum_probs=88.7
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHH
Q 002834 657 VMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVD 735 (875)
Q Consensus 657 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 735 (875)
..+..+...+...|++++|+..|++. +.|+...+..+..++...|++++|.+.|+++.+. .|+ ...+..++.
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~lg~ 79 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR---DKHLAVAYFQRGM 79 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHH
Confidence 34556667777778888888887766 3566677777777777888888888888777662 333 446777777
Q ss_pred HhhcCCChHHHHHHHHhCC-CCC-CH----------------HHHHHHHHHHHhcCChhHHHHHHHHHhcccCC
Q 002834 736 LLARGGQISDAYSLVNRMP-VEA-DC----------------NVWGTLLGACRIHHEVELGRVVANRLFEMEAD 791 (875)
Q Consensus 736 ~~~~~g~~~~A~~~~~~~~-~~p-~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 791 (875)
+|...|++++|++.+++.. ..| +. ..|..+..++...|+++.|...++++++++|+
T Consensus 80 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 80 LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 7777777777777776663 222 11 56666667777777777777777777777664
No 114
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.70 E-value=1.1e-07 Score=95.66 Aligned_cols=132 Identities=8% Similarity=-0.007 Sum_probs=110.9
Q ss_pred CCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCCHHHHHHH
Q 002834 688 NPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEADCNVWGTL 765 (875)
Q Consensus 688 ~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l 765 (875)
+.+...+..+...+...|++++|...|+++.+ ..|+ ...+..++.+|.+.|++++|...++++. ..|+...+...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQ---LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence 34445566777789999999999999999987 4565 4588899999999999999999999996 66776544444
Q ss_pred HHH-HHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 002834 766 LGA-CRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTR 822 (875)
Q Consensus 766 ~~~-~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 822 (875)
... +...++.+.|+..++++++.+|+++..+..|+.+|...|++++|++.+..+...
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 433 567788899999999999999999999999999999999999999988777653
No 115
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.67 E-value=2.4e-07 Score=89.43 Aligned_cols=162 Identities=14% Similarity=0.061 Sum_probs=111.9
Q ss_pred HHHHHHhHhcCCHHHHHHHhccCCC--CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChh----hHHHHH
Q 002834 629 GALLHLYAKCGSIFSASKIFQCHPQ--KD----VVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHV----VITAVL 698 (875)
Q Consensus 629 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll 698 (875)
..+...+.+.|++++|...|+++.+ |+ ...+..+..+|...|++++|+..|+++.+. .|+.. .+..+.
T Consensus 8 ~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 8 YATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHHHHH
Confidence 3445556667777777777776543 22 235666777777777777777777777764 33322 233333
Q ss_pred HHHh------------------hcCcHHHHHHHHHHhHHHhCCCCChh-HH-----------------HHHHHHhhcCCC
Q 002834 699 SACS------------------HAGLVDEGLEIFRSIEKVQGIKPTPE-QY-----------------ASLVDLLARGGQ 742 (875)
Q Consensus 699 ~a~~------------------~~g~~~~a~~~~~~~~~~~~~~p~~~-~~-----------------~~l~~~~~~~g~ 742 (875)
.++. ..|+.++|...|+++.+ ..|+.. .+ ..++..|.+.|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~---~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~ 162 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR---GYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGA 162 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHT---TCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH---HCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 3333 25678888888888866 345432 11 356778899999
Q ss_pred hHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCcc
Q 002834 743 ISDAYSLVNRMP-VEADC----NVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGN 795 (875)
Q Consensus 743 ~~~A~~~~~~~~-~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 795 (875)
+++|+..++++. ..|+. ..+..+..++...|+.+.|+..++++....|++...
T Consensus 163 ~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 163 WVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred HHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 999999998874 33432 568888899999999999999999999999987654
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.67 E-value=2.2e-07 Score=94.62 Aligned_cols=171 Identities=8% Similarity=-0.036 Sum_probs=130.4
Q ss_pred cCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CC-C-hhhHHHHHHHHhhcCcHHHHHH
Q 002834 638 CGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGV---NP-D-HVVITAVLSACSHAGLVDEGLE 712 (875)
Q Consensus 638 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p-~-~~~~~~ll~a~~~~g~~~~a~~ 712 (875)
.+++++|...|.+ ....|...|++++|+..|.+..+... .+ . ..+|..+...|...|++++|+.
T Consensus 29 ~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 97 (307)
T 2ifu_A 29 KPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQ 97 (307)
T ss_dssp SCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHH
T ss_pred CCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 4666666666543 45677788888888888887765311 11 1 3467778888999999999999
Q ss_pred HHHHhHHHhCCC--CC--hhHHHHHHHHhhcCCChHHHHHHHHhCC-CC---CC----HHHHHHHHHHHHhcCChhHHHH
Q 002834 713 IFRSIEKVQGIK--PT--PEQYASLVDLLARGGQISDAYSLVNRMP-VE---AD----CNVWGTLLGACRIHHEVELGRV 780 (875)
Q Consensus 713 ~~~~~~~~~~~~--p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~---p~----~~~~~~l~~~~~~~~~~~~a~~ 780 (875)
.|++..+.+.-. |. ..++..++.+|.. |++++|++.+++.. .. .+ ..++..+...+...|+++.|+.
T Consensus 98 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 176 (307)
T 2ifu_A 98 YIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAA 176 (307)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999987643211 21 3478889999998 99999999998873 11 11 3678888899999999999999
Q ss_pred HHHHHhcccCCCCc------cHHHHHHHHHhcCCchhHHHHHHHHH
Q 002834 781 VANRLFEMEADNIG------NYVVMSNLYAADARWDGVVEIRKLMK 820 (875)
Q Consensus 781 ~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~ 820 (875)
.+++++++.|++.. .+..++.+|...|++++|++.+++..
T Consensus 177 ~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 177 SLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 99999999877643 56778889999999999999887765
No 117
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.66 E-value=1.4e-07 Score=83.36 Aligned_cols=99 Identities=12% Similarity=-0.052 Sum_probs=81.1
Q ss_pred CCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHH
Q 002834 723 IKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVM 799 (875)
Q Consensus 723 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 799 (875)
+.|+ ...+..++..+.+.|++++|...+++.. ..| +...|..+..++...|+++.|+..++++++++|+++..+..+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 92 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA 92 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 4454 3356667788888888888888888774 344 567888888888889999999999999999999999999999
Q ss_pred HHHHHhcCCchhHHHHHHHHHh
Q 002834 800 SNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 800 ~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
|.+|...|++++|++.++...+
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999998777654
No 118
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.64 E-value=1e-05 Score=87.64 Aligned_cols=201 Identities=10% Similarity=-0.047 Sum_probs=99.5
Q ss_pred hHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcccHHHHHHHhhcCCChHHH-HHHHHhh
Q 002834 473 MVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEA-FMTFSRI 551 (875)
Q Consensus 473 ~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A-~~~~~~~ 551 (875)
.+..+++.++... +....++...+..+.+.|+.++|..++++....|....... .|....+.++. ..+.+..
T Consensus 197 Rv~~~ye~al~~~----p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~---~y~~~~e~~~~~~~l~~~~ 269 (493)
T 2uy1_A 197 RMHFIHNYILDSF----YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSL---YYGLVMDEEAVYGDLKRKY 269 (493)
T ss_dssp HHHHHHHHHHHHT----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH---HHHHHTTCTHHHHHHHHHT
T ss_pred HHHHHHHHHHHcC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHH---HHHhhcchhHHHHHHHHHH
Confidence 3556666666644 44466666667777778888888888876554443322111 12111111111 1111111
Q ss_pred h--c-------C---CCccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhccc-chHHHHHHHHHHH
Q 002834 552 Y--A-------R---DLTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMA-SVHLLRQCHGYVI 618 (875)
Q Consensus 552 ~--~-------~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~-~~~~a~~~~~~~~ 618 (875)
. . . ....|...+....+.+..+.|..+|.+. +. ...+...|......-...+ +.+.|..+++...
T Consensus 270 ~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al 347 (493)
T 2uy1_A 270 SMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGL 347 (493)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 0 0 0 0011566666666667777788887777 21 1112222221111111112 4666666666666
Q ss_pred HhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 002834 619 RACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDML 683 (875)
Q Consensus 619 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 683 (875)
+..++++..+...++...+.|+.+.|..+|+++. .....|...+.--...|+.+.+.++++++.
T Consensus 348 ~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 348 LKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6554444455555555556666666666666653 234445555544444555555555554444
No 119
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.63 E-value=2.9e-06 Score=84.59 Aligned_cols=223 Identities=8% Similarity=-0.027 Sum_probs=160.9
Q ss_pred hHHHHHHHHHHHCCCCCCcch-HhcHHHHhhccc--chHHHHHHHHHHHHhcCCCchHHHHHHHHh----Hhc---CCHH
Q 002834 573 NQALSLFLKLQAQGMKPDAVT-IMSLLPVCSQMA--SVHLLRQCHGYVIRACFDGVRLNGALLHLY----AKC---GSIF 642 (875)
Q Consensus 573 ~~A~~~~~~m~~~g~~p~~~~-~~~ll~a~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g~~~ 642 (875)
++|+.++..+... .|+..| ++.--......+ .++.+....+.+...++++..+++.-...+ .+. ++++
T Consensus 50 ~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 4566666666543 444433 222222333444 666666666666666666666665554444 444 7888
Q ss_pred HHHHHhccCCC---CChhhHHHHHHHHHHcCChH--HHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCc------HHHHH
Q 002834 643 SASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGK--AALKVFSDMLELGVNPDHVVITAVLSACSHAGL------VDEGL 711 (875)
Q Consensus 643 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~------~~~a~ 711 (875)
+++.+++++.+ ++..+|+.-...+...|+++ ++++.++++++.. +-|...|+.-...+.+.|. +++++
T Consensus 128 ~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl 206 (306)
T 3dra_A 128 REFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEEL 206 (306)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHH
Confidence 99988887765 57788998888888899888 9999999999864 3456667666666666666 89999
Q ss_pred HHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHH-HHHHHHhCC-C----CCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 002834 712 EIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISD-AYSLVNRMP-V----EADCNVWGTLLGACRIHHEVELGRVVANR 784 (875)
Q Consensus 712 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~-A~~~~~~~~-~----~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 784 (875)
++++++.. ..|+ ...|..+..++.+.|+..+ +.++.+++. . ..++..+..++.++.+.|+.++|+++++.
T Consensus 207 ~~~~~aI~---~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 207 NYVKDKIV---KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHH---HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHH---hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 99999987 4554 5588888888888888544 556887764 2 33668888899999999999999999999
Q ss_pred Hhc-ccCCCCccHHHHHH
Q 002834 785 LFE-MEADNIGNYVVMSN 801 (875)
Q Consensus 785 ~~~-~~p~~~~~~~~l~~ 801 (875)
+.+ .||-....|...+.
T Consensus 284 l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 284 LKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHTTCGGGHHHHHHHHH
T ss_pred HHhccChHHHHHHHHHHh
Confidence 996 89988887776554
No 120
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.61 E-value=3e-07 Score=87.38 Aligned_cols=158 Identities=12% Similarity=0.043 Sum_probs=121.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-hhHHH----------------HHHHHhhcCcHHHHHHHHHHhHHH
Q 002834 658 MLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDH-VVITA----------------VLSACSHAGLVDEGLEIFRSIEKV 720 (875)
Q Consensus 658 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~----------------ll~a~~~~g~~~~a~~~~~~~~~~ 720 (875)
.+-.....+...|++++|+..|++..+. .|+. ..+.. +..++...|++++|...|++..+
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~- 82 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ- 82 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-
Confidence 3445566778999999999999999984 5654 44555 77789999999999999999987
Q ss_pred hCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcC--ChhHHHHHHHHHhcccCCCCcc
Q 002834 721 QGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHH--EVELGRVVANRLFEMEADNIGN 795 (875)
Q Consensus 721 ~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~ 795 (875)
+.|+ ...+..++.+|...|++++|++.+++.. ..| +..+|..+..++...| +.+.+...+++++...|.. ..
T Consensus 83 --~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~a 159 (208)
T 3urz_A 83 --KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQ-YA 159 (208)
T ss_dssp --HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHH-HH
T ss_pred --HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchh-HH
Confidence 4565 5689999999999999999999999985 555 5688888888876654 3455666777765443322 24
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 796 YVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 796 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
+..++..+...|++++|+..+++..+
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 56678889999999999999887654
No 121
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.61 E-value=1.4e-07 Score=97.16 Aligned_cols=92 Identities=12% Similarity=0.004 Sum_probs=79.5
Q ss_pred hHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHh
Q 002834 728 EQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAA 805 (875)
Q Consensus 728 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 805 (875)
..|..++.+|.+.|++++|+..++++. ..| +...|..+..++...|+++.|+..++++++++|+++.++..++.++..
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~ 276 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 276 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 577888888888899999988888874 344 568888999999999999999999999999999999999999999999
Q ss_pred cCCchhHHH-HHHHH
Q 002834 806 DARWDGVVE-IRKLM 819 (875)
Q Consensus 806 ~g~~~~A~~-~~~~~ 819 (875)
.|++++|.+ +++.|
T Consensus 277 ~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 277 IRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999954 45544
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.60 E-value=8e-07 Score=84.90 Aligned_cols=131 Identities=11% Similarity=-0.087 Sum_probs=96.5
Q ss_pred HHHHHHHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcH
Q 002834 628 NGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLV 707 (875)
Q Consensus 628 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~ 707 (875)
+..+...+...|++++|...|++...++..+|..+...|...|++++|+..|++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 44566777788888888888888877777888888888888888888888888887752 33456677777788888888
Q ss_pred HHHHHHHHHhHHHhCC-------------CCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCCH
Q 002834 708 DEGLEIFRSIEKVQGI-------------KPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEADC 759 (875)
Q Consensus 708 ~~a~~~~~~~~~~~~~-------------~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~ 759 (875)
++|.+.|+++.+...- .|+ ...+..++.+|.+.|++++|.+.++++. ..|+.
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 8888888888762211 111 2467778888888888888888887763 55543
No 123
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.60 E-value=1.7e-06 Score=87.48 Aligned_cols=160 Identities=9% Similarity=-0.036 Sum_probs=118.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCC-CCCChh----hHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC----hhHHH
Q 002834 661 AMIGGYAMHGMGKAALKVFSDMLELG-VNPDHV----VITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT----PEQYA 731 (875)
Q Consensus 661 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~ 731 (875)
..+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|+..|+++.+...-.++ ...+.
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667788899999999999888742 122221 2234555677788999999999998773222223 22688
Q ss_pred HHHHHhhcCCChHHHHHHHHhCC-----CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCC------CccH
Q 002834 732 SLVDLLARGGQISDAYSLVNRMP-----VEAD----CNVWGTLLGACRIHHEVELGRVVANRLFEMEADN------IGNY 796 (875)
Q Consensus 732 ~l~~~~~~~g~~~~A~~~~~~~~-----~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~ 796 (875)
.++.+|...|++++|...++++. ...+ ..++..+...|...|+++.|...+++++++.++. +..|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 89999999999999999888763 1112 2467888899999999999999999999987554 4578
Q ss_pred HHHHHHHHhcCC-chhHHHHHHHHH
Q 002834 797 VVMSNLYAADAR-WDGVVEIRKLMK 820 (875)
Q Consensus 797 ~~l~~~~~~~g~-~~~A~~~~~~~~ 820 (875)
..+|.+|...|+ +++|.+.+++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 899999999995 599999765543
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.60 E-value=3.2e-07 Score=83.54 Aligned_cols=124 Identities=6% Similarity=0.007 Sum_probs=90.1
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCC-ChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHH
Q 002834 694 ITAVLSACSHAGLVDEGLEIFRSIEKVQGIKP-TPEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACR 770 (875)
Q Consensus 694 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~ 770 (875)
+..+...+...|++++|...|++..+ ..| +...+..++.++...|++++|.+.+++.. ..| +...|..+..++.
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIE---LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 44455566666777777777766655 223 34466667777777777777777776653 233 5577888888888
Q ss_pred hcCChhHHHHHHHHHhcccCCCCccHHHH--HHHHHhcCCchhHHHHHHHHH
Q 002834 771 IHHEVELGRVVANRLFEMEADNIGNYVVM--SNLYAADARWDGVVEIRKLMK 820 (875)
Q Consensus 771 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~ 820 (875)
..|+++.|...++++++++|+++..+..+ +..+...|++++|++.++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 89999999999999999999998877544 444888999999999877654
No 125
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.59 E-value=2.9e-07 Score=80.11 Aligned_cols=114 Identities=8% Similarity=0.037 Sum_probs=77.6
Q ss_pred hhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCC-ChhHHHHHHHHhhcCCChHHHHHHHHhCC-C-CCCHHHHHHHHHH
Q 002834 692 VVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKP-TPEQYASLVDLLARGGQISDAYSLVNRMP-V-EADCNVWGTLLGA 768 (875)
Q Consensus 692 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~ 768 (875)
..+..+...+...|++++|.+.|+++.+ ..| +...+..++.++...|++++|.+.++++. . +.+...|..+..+
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3344455555555566666665555543 233 23455566666666666666666665553 2 2345677788888
Q ss_pred HHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCC
Q 002834 769 CRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADAR 808 (875)
Q Consensus 769 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 808 (875)
+...|+++.|+..++++++++|.++..+..++.+|...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888999999999999999999999999999998887764
No 126
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.58 E-value=4e-07 Score=78.85 Aligned_cols=117 Identities=7% Similarity=-0.009 Sum_probs=85.4
Q ss_pred hhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHH
Q 002834 692 VVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGAC 769 (875)
Q Consensus 692 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~ 769 (875)
..+..+...+...|++++|.+.|+++.+. .+.+...+..++.++...|++++|.+.+++.. ..| +...|..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 34455555666667777777777666552 12234466667777777777777777776653 233 456778888888
Q ss_pred HhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCch
Q 002834 770 RIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWD 810 (875)
Q Consensus 770 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 810 (875)
...|+++.|...++++++++|+++..+..++.++...|+++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 88999999999999999999999999999999999888764
No 127
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.56 E-value=2.6e-07 Score=79.57 Aligned_cols=118 Identities=13% Similarity=0.047 Sum_probs=88.8
Q ss_pred hHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHh
Q 002834 728 EQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAA 805 (875)
Q Consensus 728 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 805 (875)
..+..++..+.+.|++++|++.+++.. ..| +...|..+..++...|+++.|+..++++++++|+++..|..+|.+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 356667777778888888888877764 334 567788888888888999999999999999999999899999999999
Q ss_pred cCCchhHHHHHHHHHhCCCcCCCceeEEEeCCEEeEEecCCCCCCChHHHHHHHHHHHHH
Q 002834 806 DARWDGVVEIRKLMKTRDLKKPAACSWIEVERKNNAFMAGDYSHPRRDMIYWVLSILDEQ 865 (875)
Q Consensus 806 ~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~ 865 (875)
.|++++|++.+++..+.. |+. ...|...++...+..+.++
T Consensus 85 ~~~~~~A~~~~~~al~~~----p~~----------------~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 85 VKEYASALETLDAARTKD----AEV----------------NNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp TTCHHHHHHHHHHHHHHH----HHH----------------HTTTTHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhC----ccc----------------CCchhHHHHHHHHHHHHHh
Confidence 999999999877665421 110 1346667777777766554
No 128
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.56 E-value=5.6e-07 Score=77.11 Aligned_cols=114 Identities=13% Similarity=0.144 Sum_probs=80.0
Q ss_pred hhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 002834 692 VVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP--VEADCNVWGTLLGAC 769 (875)
Q Consensus 692 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~ 769 (875)
..+..+...+...|++++|.++++++.+. .+.+...+..++.++.+.|++++|..+++++. .+.+...|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 34555555666666666666666666552 12234456666666777777777777666653 233556777888888
Q ss_pred HhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcC
Q 002834 770 RIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADA 807 (875)
Q Consensus 770 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 807 (875)
...|+++.|...++++++.+|+++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88899999999999999999999988888888887654
No 129
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.55 E-value=3.1e-07 Score=84.74 Aligned_cols=116 Identities=10% Similarity=0.192 Sum_probs=63.1
Q ss_pred hcCcHHHHHHHHHHhHHHhCCCC-ChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHH-HHhcCCh--h
Q 002834 703 HAGLVDEGLEIFRSIEKVQGIKP-TPEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGA-CRIHHEV--E 776 (875)
Q Consensus 703 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~-~~~~~~~--~ 776 (875)
..|++++|...+++..+. .| +...+..++.+|...|++++|...++++. ..| +...|..+..+ +...|++ +
T Consensus 22 ~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHHH---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 344555555555555441 22 23355555555555555555555555542 222 34455555555 4455665 6
Q ss_pred HHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 777 LGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 777 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
.|+..++++++.+|+++..+..++.+|...|++++|.+.++...+
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 666666666666666666666666666666666666666655543
No 130
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.54 E-value=7.9e-08 Score=96.31 Aligned_cols=185 Identities=11% Similarity=-0.020 Sum_probs=132.3
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHH
Q 002834 626 RLNGALLHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNP-DHVVITAVLSAC 701 (875)
Q Consensus 626 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~ 701 (875)
..+..+...+.+.|++++|...|++... .+...|..+..+|...|++++|+..+++..+. .| +...+..+..++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 4456677788888999999999887653 46778889999999999999999999998874 44 456677777799
Q ss_pred hhcCcHHHHHHHHHHhHHHhCCCCChh-HHHHHHHH---hhcCCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 002834 702 SHAGLVDEGLEIFRSIEKVQGIKPTPE-QYASLVDL---LARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVEL 777 (875)
Q Consensus 702 ~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~---~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 777 (875)
...|++++|...|+++.+. .|+.. .+...+.. ..+...+.. .......++..+...+... ..|+.+.
T Consensus 83 ~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS----IEERRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH----HHHTCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH----HHHHHHhhhHHHHHHHHHH--HHHHHHH
Confidence 9999999999999988763 23211 11111121 222222222 2222334455554444332 3689999
Q ss_pred HHHHHHHHhcccCCCCccHHHHHHHHHhc-CCchhHHHHHHHHHh
Q 002834 778 GRVVANRLFEMEADNIGNYVVMSNLYAAD-ARWDGVVEIRKLMKT 821 (875)
Q Consensus 778 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 821 (875)
|.+.++++++++|++......+..++... +++++|.+++....+
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999888888888888887 789999999887754
No 131
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.54 E-value=1.1e-07 Score=92.16 Aligned_cols=136 Identities=10% Similarity=-0.047 Sum_probs=98.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC--hhHHHHHHHHh
Q 002834 660 TAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT--PEQYASLVDLL 737 (875)
Q Consensus 660 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~ 737 (875)
-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...+ .. .|. ...+..++.++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-~~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-WP-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-CS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-cC-CcccHHHHHHHHHHHH
Confidence 34567777888888888888887663 45554555555578888899999988875533 11 121 23567788888
Q ss_pred hcCCChHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHH
Q 002834 738 ARGGQISDAYSLVNRMP---VEAD--CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMS 800 (875)
Q Consensus 738 ~~~g~~~~A~~~~~~~~---~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 800 (875)
.+.|++++|++.+++.. ..|. ...+..+..++...|+.++|...++++++.+|+ +.....|.
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 88999999999888873 2143 346777777888889999999999999999987 66555553
No 132
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.53 E-value=1.6e-06 Score=87.54 Aligned_cols=162 Identities=9% Similarity=-0.072 Sum_probs=117.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh-----hhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC----hh
Q 002834 658 MLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDH-----VVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT----PE 728 (875)
Q Consensus 658 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 728 (875)
.+...+..+...|++++|++.+++..+.....+. ..+..+...+...|++++|...++++.+...-..+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3455677788889999999999888774322111 12333445667788999999999888652111111 34
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCC------C
Q 002834 729 QYASLVDLLARGGQISDAYSLVNRMP----VEAD-----CNVWGTLLGACRIHHEVELGRVVANRLFEMEADN------I 793 (875)
Q Consensus 729 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~ 793 (875)
.|..++.+|...|++++|...++++. ..|+ ..++..+...|...|+++.|...+++++++.++. +
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 78888999999999999999887763 1222 1578888899999999999999999999876431 4
Q ss_pred ccHHHHHHHHHhcCCchhH-HHHHHHH
Q 002834 794 GNYVVMSNLYAADARWDGV-VEIRKLM 819 (875)
Q Consensus 794 ~~~~~l~~~~~~~g~~~~A-~~~~~~~ 819 (875)
..|..+|.+|...|++++| ...+++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 5688899999999999999 6645443
No 133
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.50 E-value=2e-07 Score=79.29 Aligned_cols=93 Identities=8% Similarity=-0.008 Sum_probs=80.4
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhc
Q 002834 729 QYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAAD 806 (875)
Q Consensus 729 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 806 (875)
.+..++..+.+.|++++|+..+++.. ..| +...|..+..++...|+.+.|+..++++++++|+++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 45667778888899999998888874 445 5688888888888999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHh
Q 002834 807 ARWDGVVEIRKLMKT 821 (875)
Q Consensus 807 g~~~~A~~~~~~~~~ 821 (875)
|++++|++.+++..+
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999998887654
No 134
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.50 E-value=1.9e-07 Score=82.91 Aligned_cols=116 Identities=9% Similarity=-0.020 Sum_probs=87.3
Q ss_pred HHHHHHCCCCCC-hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCC-ChhHHHHHHHHhhcCCChHHHHHHHHhCC-C
Q 002834 679 FSDMLELGVNPD-HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKP-TPEQYASLVDLLARGGQISDAYSLVNRMP-V 755 (875)
Q Consensus 679 ~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~ 755 (875)
|+++.. +.|+ ...+..+...+...|++++|...|+++.. ..| +...|..++.+|...|++++|++.+++.. .
T Consensus 10 ~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 10 IAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCV---LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp HHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH---cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 444443 3443 33455566678888888888888888876 345 35577788888888889998888888874 4
Q ss_pred CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHH
Q 002834 756 EA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVM 799 (875)
Q Consensus 756 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 799 (875)
.| ++..|..+..++...|+++.|+..++++++++|+++......
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 129 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELS 129 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHH
Confidence 44 557888888889999999999999999999999988764433
No 135
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.49 E-value=4.1e-07 Score=88.24 Aligned_cols=181 Identities=6% Similarity=-0.100 Sum_probs=135.3
Q ss_pred hcCCHHHHHHHhccCCC---CChhhHHHH-------HHHHHHcCChHHHHHHHHHHHHCCCCCChh--------------
Q 002834 637 KCGSIFSASKIFQCHPQ---KDVVMLTAM-------IGGYAMHGMGKAALKVFSDMLELGVNPDHV-------------- 692 (875)
Q Consensus 637 ~~g~~~~A~~~~~~~~~---~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------------- 692 (875)
..++...|.+.|.++.. .....|+.+ ...+...++..+++..+..-.. +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 46777888888877664 344677777 4666666666666665555443 344321
Q ss_pred --------hHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCCCCCCH----H
Q 002834 693 --------VITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMPVEADC----N 760 (875)
Q Consensus 693 --------~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~ 760 (875)
....+..++...|++++|.++|+.+.. ..|+......+...+.+.|++++|+..++.....|++ .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 123345678889999999999988854 4465446667778899999999999999977544443 4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccc--CC-CCccHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 002834 761 VWGTLLGACRIHHEVELGRVVANRLFEME--AD-NIGNYVVMSNLYAADARWDGVVEIRKLMKTR 822 (875)
Q Consensus 761 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 822 (875)
++..+..++...|+++.|+..++++.... |. .+...+.++.++.+.|+.++|..+++++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 67788888999999999999999998643 44 4457889999999999999999999998764
No 136
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.47 E-value=6e-05 Score=81.58 Aligned_cols=125 Identities=14% Similarity=0.075 Sum_probs=90.8
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH-HhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHH
Q 002834 657 VMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSA-CSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVD 735 (875)
Q Consensus 657 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 735 (875)
..|-..+..+.+.+..+.|..+|++. .. ..++...|...... +...++.+.|..+|+...+.++-. ...+...++
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~--~~~~~~yid 362 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDS--TLLKEEFFL 362 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCC--HHHHHHHHH
Confidence 45777777777788899999999998 32 12233344322221 122347999999999998854322 345566778
Q ss_pred HhhcCCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 002834 736 LLARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLFE 787 (875)
Q Consensus 736 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 787 (875)
.....|+.+.|..+++.+. .....|..++..-..+|+.+.+..++++.++
T Consensus 363 ~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 363 FLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7888999999999999983 3568899999888889999999998888875
No 137
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.46 E-value=2.3e-06 Score=81.35 Aligned_cols=160 Identities=10% Similarity=-0.101 Sum_probs=124.7
Q ss_pred CchHHHHHHHHhHhcCCHHHHHHHhccCCC-CChhhHHHHHHHHHHcC----ChHHHHHHHHHHHHCCCCCChhhHHHHH
Q 002834 624 GVRLNGALLHLYAKCGSIFSASKIFQCHPQ-KDVVMLTAMIGGYAMHG----MGKAALKVFSDMLELGVNPDHVVITAVL 698 (875)
Q Consensus 624 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~~~~~ll 698 (875)
++.....|..+|...+++++|...|++..+ .++.++..|...|.. + +.++|+++|++..+.| +...+..+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg 92 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLA 92 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 445566677778888888888888887654 466778888888877 6 8999999999998754 556666777
Q ss_pred HHHhh----cCcHHHHHHHHHHhHHHhCCCCC---hhHHHHHHHHhhc----CCChHHHHHHHHhCC-CCCCHHHHHHHH
Q 002834 699 SACSH----AGLVDEGLEIFRSIEKVQGIKPT---PEQYASLVDLLAR----GGQISDAYSLVNRMP-VEADCNVWGTLL 766 (875)
Q Consensus 699 ~a~~~----~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~~~-~~p~~~~~~~l~ 766 (875)
..|.. .+++++|.++|++..+ ..|. ...+..|..+|.. .+++++|+.++++.. ..+++..+..|.
T Consensus 93 ~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg 169 (212)
T 3rjv_A 93 RVLVNRQAGATDVAHAITLLQDAAR---DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAG 169 (212)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHTS---STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHH---cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 77776 7899999999998865 4443 5678888888888 889999999999885 335666777777
Q ss_pred HHHHhc-C-----ChhHHHHHHHHHhcccC
Q 002834 767 GACRIH-H-----EVELGRVVANRLFEMEA 790 (875)
Q Consensus 767 ~~~~~~-~-----~~~~a~~~~~~~~~~~p 790 (875)
..|... | |.++|...++++.+..+
T Consensus 170 ~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 170 MMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 777643 3 89999999999988754
No 138
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.46 E-value=8.6e-08 Score=90.48 Aligned_cols=169 Identities=7% Similarity=-0.068 Sum_probs=98.4
Q ss_pred HHHhHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHH
Q 002834 632 LHLYAKCGSIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVD 708 (875)
Q Consensus 632 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~ 708 (875)
+......|.+++|.+.++.... .....|..+...+...|++++|+..|++..+. .|+...+... ..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~ 80 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILL 80 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHH
Confidence 3344445555555555543322 12334555566666666666666666666652 2221110000 000
Q ss_pred HHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 002834 709 EGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLF 786 (875)
Q Consensus 709 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 786 (875)
.-. ..+ ....|..++.+|.+.|++++|+..+++.. ..| +...|..+..++...|+++.|+..+++++
T Consensus 81 ~~~---~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 81 DKK---KNI--------EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HHH---HHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHH---HHH--------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 000 000 12567777888888888888888888774 334 56788888899999999999999999999
Q ss_pred cccCCCCccHHHHHHHHHhcCCchhHHH-HHHHHHh
Q 002834 787 EMEADNIGNYVVMSNLYAADARWDGVVE-IRKLMKT 821 (875)
Q Consensus 787 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~ 821 (875)
+++|+++..+..++.++...|+.+++.+ .++.|-.
T Consensus 150 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 150 SLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999998888873 5555543
No 139
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.43 E-value=8.9e-07 Score=74.06 Aligned_cols=96 Identities=14% Similarity=0.035 Sum_probs=78.2
Q ss_pred hhHHHHHHHHhhcCCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCC--CCccHHHHHHH
Q 002834 727 PEQYASLVDLLARGGQISDAYSLVNRMP--VEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEAD--NIGNYVVMSNL 802 (875)
Q Consensus 727 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 802 (875)
...+..++..+.+.|++++|...+++.. .+.+...|..+..++...|+++.|+..++++++..|+ ++..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 3466677777888888888888877763 2335677888888888899999999999999999999 88889999999
Q ss_pred HHhc-CCchhHHHHHHHHHhC
Q 002834 803 YAAD-ARWDGVVEIRKLMKTR 822 (875)
Q Consensus 803 ~~~~-g~~~~A~~~~~~~~~~ 822 (875)
|... |++++|++.++.....
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 9999 9999999988877653
No 140
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.42 E-value=7e-07 Score=79.01 Aligned_cols=98 Identities=11% Similarity=-0.046 Sum_probs=68.3
Q ss_pred hHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHH
Q 002834 693 VITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGAC 769 (875)
Q Consensus 693 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~ 769 (875)
.+..+...+.+.|++++|.+.|+++.+ +.|+ ...|..++.+|.+.|++++|++.++++. ..| ++..|..+..++
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCI---YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 345555566677777777777777766 3444 4466677777777777777777777663 344 456777777777
Q ss_pred HhcCChhHHHHHHHHHhcccCCCC
Q 002834 770 RIHHEVELGRVVANRLFEMEADNI 793 (875)
Q Consensus 770 ~~~~~~~~a~~~~~~~~~~~p~~~ 793 (875)
...|+++.|+..+++++++.|+++
T Consensus 115 ~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCHH
Confidence 888888888888888888887654
No 141
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.42 E-value=1.2e-06 Score=80.81 Aligned_cols=129 Identities=10% Similarity=0.148 Sum_probs=101.0
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCC-ChhHHHHHHHH-hhcCCCh-
Q 002834 667 AMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKP-TPEQYASLVDL-LARGGQI- 743 (875)
Q Consensus 667 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~-~~~~g~~- 743 (875)
...|++++|+..+++..+.. +.+...+..+..++...|++++|...|+++.+. .| +...+..++.+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCcc
Confidence 45678888999998888752 345667788888999999999999999998773 34 45577888888 7788998
Q ss_pred -HHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHH
Q 002834 744 -SDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVM 799 (875)
Q Consensus 744 -~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 799 (875)
++|...++++. ..| +...|..+...+...|+++.|+..++++++++|+++.....+
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 155 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLV 155 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 99999998874 444 567888888999999999999999999999999987655433
No 142
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.41 E-value=8.2e-06 Score=82.03 Aligned_cols=209 Identities=8% Similarity=-0.010 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHhHhcC-CHHHHHHHhccCCC---CChhhHHHHHHHHHHc-C-ChHHHHHHHHHH
Q 002834 609 LLRQCHGYVIRACFDGVRLNGALLHLYAKCG-SIFSASKIFQCHPQ---KDVVMLTAMIGGYAMH-G-MGKAALKVFSDM 682 (875)
Q Consensus 609 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g-~~~~A~~~~~~m 682 (875)
++.++.+.++..++.+..+++.--..+...| .+++++..++.+.. .+..+|+.-...+... + ++++++++++++
T Consensus 72 ~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~ 151 (349)
T 3q7a_A 72 RALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGS 151 (349)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 3444444444444444455555555555556 47777777776554 4556777777666665 6 778888888888
Q ss_pred HHCCCCCChhhHHHHHHHHhhcCcHH--------HHHHHHHHhHHHhCCCC-ChhHHHHHHHHhhcCCC-------hHHH
Q 002834 683 LELGVNPDHVVITAVLSACSHAGLVD--------EGLEIFRSIEKVQGIKP-TPEQYASLVDLLARGGQ-------ISDA 746 (875)
Q Consensus 683 ~~~g~~p~~~~~~~ll~a~~~~g~~~--------~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~-------~~~A 746 (875)
.+.. +-|...|..-.-.+.+.|.++ +++++++++.+ ..| +...|+....++.+.|+ ++++
T Consensus 152 L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~---~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eE 227 (349)
T 3q7a_A 152 LLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR---VDGRNNSAWGWRWYLRVSRPGAETSSRSLQDE 227 (349)
T ss_dssp TSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccccccchHHHHHH
Confidence 7642 334555555444444545444 88888888877 334 44577777777777776 6888
Q ss_pred HHHHHhCC-CCC-CHHHHHHHHHHHHhcCCh--------------------hHHHHHHHHHhccc------CCCCccHHH
Q 002834 747 YSLVNRMP-VEA-DCNVWGTLLGACRIHHEV--------------------ELGRVVANRLFEME------ADNIGNYVV 798 (875)
Q Consensus 747 ~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~--------------------~~a~~~~~~~~~~~------p~~~~~~~~ 798 (875)
+++++++. ..| |...|+.+.+.+...|+. .........++... +..+.+...
T Consensus 228 Le~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~ 307 (349)
T 3q7a_A 228 LIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEY 307 (349)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHH
Confidence 88887774 444 678898888887776653 22223333333222 344556778
Q ss_pred HHHHHHhcCCchhHHHHHHHHHh
Q 002834 799 MSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 799 l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
|+.+|...|+.++|.++++.+.+
T Consensus 308 l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 308 LADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Confidence 99999999999999999999864
No 143
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.39 E-value=1.4e-06 Score=76.24 Aligned_cols=96 Identities=8% Similarity=0.037 Sum_probs=71.8
Q ss_pred ChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHH
Q 002834 726 TPEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLY 803 (875)
Q Consensus 726 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 803 (875)
+...+..++..+...|++++|...+++.. ..| +...|..+..++...|+++.|+..++++++++|+++..+..+|.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 34566667777777777777777776653 333 4567777777777888888888888888888888888888888888
Q ss_pred HhcCCchhHHHHHHHHHh
Q 002834 804 AADARWDGVVEIRKLMKT 821 (875)
Q Consensus 804 ~~~g~~~~A~~~~~~~~~ 821 (875)
...|++++|++.++...+
T Consensus 88 ~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 888888888887776654
No 144
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.39 E-value=8.6e-07 Score=80.50 Aligned_cols=109 Identities=12% Similarity=0.077 Sum_probs=91.0
Q ss_pred ChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCC-ChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHH
Q 002834 690 DHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKP-TPEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLL 766 (875)
Q Consensus 690 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~ 766 (875)
+...+..+...+...|++++|++.|++..+ +.| +...|..++.+|.+.|++++|+..+++.. ..| +...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALS---IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 345677777889999999999999999987 345 45688899999999999999999998874 445 568888898
Q ss_pred HHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHH
Q 002834 767 GACRIHHEVELGRVVANRLFEMEADNIGNYVVMSN 801 (875)
Q Consensus 767 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 801 (875)
.++...|+++.|+..++++++++|+++..+...+.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 99999999999999999999999999987665553
No 145
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.38 E-value=1.9e-06 Score=78.20 Aligned_cols=95 Identities=11% Similarity=0.075 Sum_probs=70.1
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHH
Q 002834 655 DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASL 733 (875)
Q Consensus 655 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 733 (875)
+...|..+...+...|++++|+..|++.++.. +-+...+..+..++...|++++|+..|+++.+ +.|+ ...|..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l 85 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATV---VDPKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 34567777778888888888888888887742 23455666677778888888888888888776 3454 4577778
Q ss_pred HHHhhcCCChHHHHHHHHhC
Q 002834 734 VDLLARGGQISDAYSLVNRM 753 (875)
Q Consensus 734 ~~~~~~~g~~~~A~~~~~~~ 753 (875)
+.+|.+.|++++|.+.+++.
T Consensus 86 g~~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHH
Confidence 88888888888888887776
No 146
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.38 E-value=1.3e-06 Score=76.98 Aligned_cols=106 Identities=9% Similarity=-0.028 Sum_probs=76.8
Q ss_pred hHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHH
Q 002834 693 VITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGAC 769 (875)
Q Consensus 693 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~ 769 (875)
.+..+...+...|++++|.+.|+++.. ..|+ ...|..++.+|.+.|++++|+..+++.. ..| ++..|..+..++
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCM---LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 344455566777777777777777766 3443 4467777777778888888887777764 334 456777888888
Q ss_pred HhcCChhHHHHHHHHHhcccCCCCccHHHHHH
Q 002834 770 RIHHEVELGRVVANRLFEMEADNIGNYVVMSN 801 (875)
Q Consensus 770 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 801 (875)
...|+++.|+..++++++++|+++........
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 128 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEALAAR 128 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHHHHH
Confidence 88899999999999999999988876655443
No 147
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.38 E-value=1.1e-06 Score=75.55 Aligned_cols=92 Identities=5% Similarity=-0.015 Sum_probs=76.1
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCc-------cHHHH
Q 002834 729 QYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIG-------NYVVM 799 (875)
Q Consensus 729 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~~l 799 (875)
.+..++..+.+.|++++|++.+++.. ..| +...|..+..++...|+++.|+..++++++++|+++. +|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 56677888888888888888888774 445 5678888999999999999999999999999998765 56678
Q ss_pred HHHHHhcCCchhHHHHHHHHH
Q 002834 800 SNLYAADARWDGVVEIRKLMK 820 (875)
Q Consensus 800 ~~~~~~~g~~~~A~~~~~~~~ 820 (875)
|.+|...|++++|++.+++..
T Consensus 90 g~~~~~~~~~~~A~~~~~kal 110 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSL 110 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 888999999999999877644
No 148
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.37 E-value=2.7e-06 Score=85.84 Aligned_cols=162 Identities=8% Similarity=-0.052 Sum_probs=121.0
Q ss_pred HHHHHHHHhHhcCCHHHHHHHhccCCC---CCh------hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC---CC--hh
Q 002834 627 LNGALLHLYAKCGSIFSASKIFQCHPQ---KDV------VMLTAMIGGYAMHGMGKAALKVFSDMLELGVN---PD--HV 692 (875)
Q Consensus 627 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p~--~~ 692 (875)
.+...+..+...|++++|.+.+++..+ ... ..+..+...+...|++++|+..+++..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344567788899999999998875332 111 23444666677889999999999998864211 11 34
Q ss_pred hHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-----hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-------CH
Q 002834 693 VITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-----PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-------DC 759 (875)
Q Consensus 693 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-------~~ 759 (875)
+++.+...|...|++++|..+|+++.+.....|+ ...+..++.+|...|++++|.+.+++.. ..+ -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 6788888999999999999999998743222333 2588899999999999999999998763 111 14
Q ss_pred HHHHHHHHHHHhcCChhHH-HHHHHHHhcc
Q 002834 760 NVWGTLLGACRIHHEVELG-RVVANRLFEM 788 (875)
Q Consensus 760 ~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~ 788 (875)
.++..+..++...|+.+.| ...+++++++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6788888899999999999 7889988764
No 149
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.36 E-value=1.8e-06 Score=74.13 Aligned_cols=108 Identities=8% Similarity=-0.063 Sum_probs=75.7
Q ss_pred hHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHH
Q 002834 693 VITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGAC 769 (875)
Q Consensus 693 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~ 769 (875)
.+......+.+.|++++|...|++..+ ..|+ ...|..++.+|.+.|++++|+..+++.. ..| +...|..+..++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIK---RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 445555566677777777777777665 2343 4567777777777777777777777663 344 456777888888
Q ss_pred HhcCChhHHHHHHHHHhccc------CCCCccHHHHHHHH
Q 002834 770 RIHHEVELGRVVANRLFEME------ADNIGNYVVMSNLY 803 (875)
Q Consensus 770 ~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 803 (875)
...|+++.|+..++++++++ |+++.....+..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 88888888888888888888 77776666665554
No 150
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=3.1e-06 Score=75.07 Aligned_cols=110 Identities=9% Similarity=-0.021 Sum_probs=67.7
Q ss_pred hHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC----hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHH
Q 002834 693 VITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT----PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLL 766 (875)
Q Consensus 693 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~ 766 (875)
.+..+...+...|++++|.++|++..+ ..|+ ...+..++.+|...|++++|++.+++.. ..| +...|..+.
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 344444445555555555555555433 3343 3355555566666666666666655542 233 456677777
Q ss_pred HHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHh
Q 002834 767 GACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAA 805 (875)
Q Consensus 767 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 805 (875)
.++...|+++.|...++++++++|+++..+..++.+...
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 777788888888888888888888887777666665433
No 151
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.35 E-value=5.7e-06 Score=78.12 Aligned_cols=117 Identities=15% Similarity=0.093 Sum_probs=58.5
Q ss_pred hcCCHHHHHH---HhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-ChhhHHHHHHHHhhcCcHH
Q 002834 637 KCGSIFSASK---IFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLEL----GVNP-DHVVITAVLSACSHAGLVD 708 (875)
Q Consensus 637 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~a~~~~g~~~ 708 (875)
..|++++|.+ .+...+.....+++.+...+...|++++|+..+++..+. +..| ....+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3566666666 444333234456666666666667777776666665541 1111 1233444555666666666
Q ss_pred HHHHHHHHhHHHhCCCC-C----hhHHHHHHHHhhcCCChHHHHHHHHhC
Q 002834 709 EGLEIFRSIEKVQGIKP-T----PEQYASLVDLLARGGQISDAYSLVNRM 753 (875)
Q Consensus 709 ~a~~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 753 (875)
+|.+.+++..+...-.+ + ...+..++.++...|++++|...+++.
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKS 133 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 66666666554311111 1 123444455555555555555554443
No 152
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.34 E-value=6.6e-07 Score=96.88 Aligned_cols=191 Identities=14% Similarity=0.073 Sum_probs=100.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcC
Q 002834 663 IGGYAMHGMGKAALKVFSDMLELGVNP-DHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARG 740 (875)
Q Consensus 663 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 740 (875)
...+...|++++|++.|++..+. .| +...+..+..++.+.|++++|.+.++++.+ +.|+ ...|..++.+|.+.
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIE---LDKKYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHc
Confidence 33445566677777777766663 33 345566666667777777777777777665 3444 34666677777777
Q ss_pred CChHHHHHHHHhCC-CCC-CHHHHHHHHHH--HHhcCChhHHHHHHH-----------HHhcccCCCCccH---------
Q 002834 741 GQISDAYSLVNRMP-VEA-DCNVWGTLLGA--CRIHHEVELGRVVAN-----------RLFEMEADNIGNY--------- 796 (875)
Q Consensus 741 g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~--~~~~~~~~~a~~~~~-----------~~~~~~p~~~~~~--------- 796 (875)
|++++|.+.++++. ..| +...+..+..+ +...|++++|++.++ ++++++|+...++
T Consensus 88 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~itl~ 167 (477)
T 1wao_1 88 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTIS 167 (477)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCGGGSCCHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccccccccccccHH
Confidence 77777777776653 233 23444444444 556677777777777 6677766643321
Q ss_pred --HHHHHHHHhcCCchhHHH--HHHHHHhCCCcCCCceeEEEeCCEEeEEecCCCCCCChHHHHHHHH
Q 002834 797 --VVMSNLYAADARWDGVVE--IRKLMKTRDLKKPAACSWIEVERKNNAFMAGDYSHPRRDMIYWVLS 860 (875)
Q Consensus 797 --~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 860 (875)
..+...+...+...+..- +....++. +.+.|....+........++.||- |-+..+..+.++
T Consensus 168 ~l~~lie~l~~~~~l~e~~v~~L~~~a~ei-l~~e~~~~~~~~~~~~~~~vigDi-HG~~~~l~~~l~ 233 (477)
T 1wao_1 168 FMKELMQWYKDQKKLHRKCAYQILVQVKEV-LSKLSTLVETTLKETEKITVCGDT-HGQFYDLLNIFE 233 (477)
T ss_dssp HHHHHHHHHHTCCCCCHHHHHHHHHHHHHH-HHTSCSEEEECCCSSCEEEEECBC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHH-HccCCCeEEeecCCCcceEEEeCC-CCCHHHHHHHHH
Confidence 122333444455443333 33333321 223343333322222334567774 666555444443
No 153
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.34 E-value=3.6e-06 Score=70.99 Aligned_cols=106 Identities=15% Similarity=0.150 Sum_probs=58.3
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCC-ChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHH
Q 002834 694 ITAVLSACSHAGLVDEGLEIFRSIEKVQGIKP-TPEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACR 770 (875)
Q Consensus 694 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~ 770 (875)
+..+...+...|++++|...|+++.+. .| +...+..++.++...|++++|...+++.. ..| +...|..+..++.
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 333444444555555555555555441 22 23344445555555555555555554442 222 3455666666666
Q ss_pred hcCChhHHHHHHHHHhcccCCCCccHHHHHHH
Q 002834 771 IHHEVELGRVVANRLFEMEADNIGNYVVMSNL 802 (875)
Q Consensus 771 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 802 (875)
..|+++.|...++++++.+|+++..+..++.+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 67777777777777777777776666655554
No 154
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.33 E-value=2.8e-06 Score=91.61 Aligned_cols=143 Identities=10% Similarity=0.004 Sum_probs=100.7
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHH
Q 002834 656 VVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVD 735 (875)
Q Consensus 656 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 735 (875)
...|..+...|.+.|++++|+..|++.++. .|+...+ . .+... +... -....|..++.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~----~~~~-----~~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESK----ASES-----FLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHH----HHHH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHH----HHHH-----HHHHHHHHHHH
Confidence 446666777777777777777777777662 2322110 0 00000 0000 01357788888
Q ss_pred HhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHH
Q 002834 736 LLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVV 813 (875)
Q Consensus 736 ~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 813 (875)
+|.+.|++++|+..++++. ..| +...|..+..++...|+++.|+..++++++++|+++.++..++.++...|++++|.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888874 344 56888999999999999999999999999999999999999999999999999988
Q ss_pred H-HHHHHH
Q 002834 814 E-IRKLMK 820 (875)
Q Consensus 814 ~-~~~~~~ 820 (875)
+ .++.|-
T Consensus 406 ~~~~~~~f 413 (457)
T 1kt0_A 406 RRIYANMF 413 (457)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 7 455553
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.33 E-value=2.3e-06 Score=72.27 Aligned_cols=95 Identities=8% Similarity=0.013 Sum_probs=85.5
Q ss_pred hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHH
Q 002834 727 PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYA 804 (875)
Q Consensus 727 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 804 (875)
...+..++..+...|++++|...+++.. ..| +...|..+...+...|+++.|...++++++.+|+++..+..++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4567788899999999999999999884 344 67888899999999999999999999999999999999999999999
Q ss_pred hcCCchhHHHHHHHHHh
Q 002834 805 ADARWDGVVEIRKLMKT 821 (875)
Q Consensus 805 ~~g~~~~A~~~~~~~~~ 821 (875)
..|++++|.+.++...+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 99999999999887764
No 156
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.31 E-value=2.1e-06 Score=77.63 Aligned_cols=62 Identities=11% Similarity=0.054 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 760 NVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 760 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
.+|..+..++...|+++.|+..++++++++|+++.+|..+|.+|...|++++|++.++....
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 56777777777888888888888888888888888888888888888888888887766543
No 157
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.28 E-value=1.8e-06 Score=75.14 Aligned_cols=100 Identities=18% Similarity=0.041 Sum_probs=62.6
Q ss_pred HHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-------------hhHHHHHHHHhhcCCChHHHHHHHHhCC-C-------
Q 002834 697 VLSACSHAGLVDEGLEIFRSIEKVQGIKPT-------------PEQYASLVDLLARGGQISDAYSLVNRMP-V------- 755 (875)
Q Consensus 697 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~------- 755 (875)
....+.+.|++++|+..|+++.+ +.|+ ...|..+..++.+.|++++|+..+++.. .
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kAL~---l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRAME---ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH---HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh---hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 33444555555555555555544 2222 1155566666666666666666655543 3
Q ss_pred CCCH-HHH----HHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHH
Q 002834 756 EADC-NVW----GTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVM 799 (875)
Q Consensus 756 ~p~~-~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 799 (875)
.|+. ..| .....++...|+++.|+..|+++++++|++.+.+--+
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 6654 667 7788888888888888888888888888887765433
No 158
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.27 E-value=2.7e-06 Score=73.78 Aligned_cols=95 Identities=9% Similarity=0.057 Sum_probs=86.0
Q ss_pred hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHH
Q 002834 727 PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYA 804 (875)
Q Consensus 727 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 804 (875)
...+..++..+.+.|++++|.+.+++.. ..| +...|..+...+...|+++.|+..++++++.+|+++..+..++.+|.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 4578889999999999999999999874 445 66888899999999999999999999999999999999999999999
Q ss_pred hcCCchhHHHHHHHHHh
Q 002834 805 ADARWDGVVEIRKLMKT 821 (875)
Q Consensus 805 ~~g~~~~A~~~~~~~~~ 821 (875)
..|++++|.+.++....
T Consensus 96 ~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 99999999998887654
No 159
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.26 E-value=1.5e-05 Score=80.43 Aligned_cols=158 Identities=9% Similarity=-0.044 Sum_probs=118.3
Q ss_pred HHHHhHhcCCHHHHHHHhccCCC-----CCh----hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----hhhHHH
Q 002834 631 LLHLYAKCGSIFSASKIFQCHPQ-----KDV----VMLTAMIGGYAMHGMGKAALKVFSDMLELGVN-PD----HVVITA 696 (875)
Q Consensus 631 l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~ 696 (875)
.+..+...|++++|...+++..+ ++. ..+..+...+...|++++|+..|++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667888999999999887544 111 12334666677778999999999999984322 22 225888
Q ss_pred HHHHHhhcCcHHHHHHHHHHhHHHhC----CCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-------CCCC-HHHHH
Q 002834 697 VLSACSHAGLVDEGLEIFRSIEKVQG----IKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-------VEAD-CNVWG 763 (875)
Q Consensus 697 ll~a~~~~g~~~~a~~~~~~~~~~~~----~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~~ 763 (875)
+..+|...|++++|..+|+++.+... ..|. ...|..++.+|.+.|++++|.+++++.. ..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88899999999999999999875322 2222 2378899999999999999999988763 1222 46788
Q ss_pred HHHHHHHhcCC-hhHHHHHHHHHhcc
Q 002834 764 TLLGACRIHHE-VELGRVVANRLFEM 788 (875)
Q Consensus 764 ~l~~~~~~~~~-~~~a~~~~~~~~~~ 788 (875)
.+..++...|+ ++.|+..+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 88888999995 69999999999875
No 160
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.26 E-value=6.6e-05 Score=75.16 Aligned_cols=191 Identities=8% Similarity=-0.062 Sum_probs=112.0
Q ss_pred hHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcC--CHHHHHHHhccCCC---CChhhHHHHHHHHHHcCC-hHHHHHHHH
Q 002834 607 VHLLRQCHGYVIRACFDGVRLNGALLHLYAKCG--SIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGM-GKAALKVFS 680 (875)
Q Consensus 607 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~~~~ 680 (875)
++.+..+.+.+....+.+..+++.-...+.+.| .+++++.+++++.+ .|..+|+.-...+...|. ++++++.++
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 456666666777766667777766666666666 36777777776654 456677776666666676 477777777
Q ss_pred HHHHCCCCCChhhHHHHHHHHhhc--------------CcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcC-----
Q 002834 681 DMLELGVNPDHVVITAVLSACSHA--------------GLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARG----- 740 (875)
Q Consensus 681 ~m~~~g~~p~~~~~~~ll~a~~~~--------------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~----- 740 (875)
++++.. +-|...|+.....+.+. +.+++++++++++.. ..|+ ...|+.+-..+.+.
T Consensus 170 ~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~---~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 170 SLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF---TDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccCccc
Confidence 777753 33444455444443333 456677777776665 3444 33454444444433
Q ss_pred ------CChHHHHHHHHhCC-CCCCHHHHHHHHHHHH-----hcCChhHHHHHHHHHhcccCCCCccHHHHHHH
Q 002834 741 ------GQISDAYSLVNRMP-VEADCNVWGTLLGACR-----IHHEVELGRVVANRLFEMEADNIGNYVVMSNL 802 (875)
Q Consensus 741 ------g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~-----~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 802 (875)
+.++++++.++++. ..||. .|..+..+.. ..+..+.....+.++.++||...+.|..+..-
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 34566666666663 45554 3443332221 23455566667777777777666666555443
No 161
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.25 E-value=4.4e-06 Score=71.34 Aligned_cols=95 Identities=14% Similarity=0.217 Sum_probs=85.6
Q ss_pred hhHHHHHHHHhhcCCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHH
Q 002834 727 PEQYASLVDLLARGGQISDAYSLVNRMP--VEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYA 804 (875)
Q Consensus 727 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 804 (875)
...+..++..+.+.|++++|.++++++. .+.+...|..+...+...|+++.|+..++++++..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 4578889999999999999999999884 33466888899999999999999999999999999999999999999999
Q ss_pred hcCCchhHHHHHHHHHh
Q 002834 805 ADARWDGVVEIRKLMKT 821 (875)
Q Consensus 805 ~~g~~~~A~~~~~~~~~ 821 (875)
..|++++|.+.++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 99999999999887764
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.23 E-value=4.3e-06 Score=72.99 Aligned_cols=99 Identities=8% Similarity=-0.046 Sum_probs=73.0
Q ss_pred ChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHH
Q 002834 690 DHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLL 766 (875)
Q Consensus 690 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~ 766 (875)
+...+..+...+...|++++|...|++..+ ..|+ ...|..++.++...|++++|...+++.. ..| +...|..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAIT---RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHh---hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 455566666677777777777777777766 2343 4567777777777788888877777763 334 457788888
Q ss_pred HHHHhcCChhHHHHHHHHHhcccCC
Q 002834 767 GACRIHHEVELGRVVANRLFEMEAD 791 (875)
Q Consensus 767 ~~~~~~~~~~~a~~~~~~~~~~~p~ 791 (875)
.++...|+++.|+..++++++++|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 8888889999999999999998887
No 163
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.22 E-value=1.7e-05 Score=74.72 Aligned_cols=129 Identities=19% Similarity=0.067 Sum_probs=86.2
Q ss_pred chHHHHHHHHhHhcCCHHHHHHHhccCCC---------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC--
Q 002834 625 VRLNGALLHLYAKCGSIFSASKIFQCHPQ---------KDVVMLTAMIGGYAMHGMGKAALKVFSDMLEL----GVNP-- 689 (875)
Q Consensus 625 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-- 689 (875)
..++..+...|...|++++|...|++... ....+++.+...|...|++++|+..+++..+. +-.|
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 34445566666777777777766665432 12356788888999999999999999887763 1122
Q ss_pred ChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC----hhHHHHHHHHhhcCCChHHHHHHHHhC
Q 002834 690 DHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT----PEQYASLVDLLARGGQISDAYSLVNRM 753 (875)
Q Consensus 690 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 753 (875)
....+..+...+...|++++|...+++..+...-.++ ...+..++.++...|++++|.+.+++.
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 173 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 1234667777889999999999999988753211112 123566667777777777777666653
No 164
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.22 E-value=1.7e-05 Score=71.89 Aligned_cols=129 Identities=12% Similarity=-0.013 Sum_probs=99.5
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCC-ChhHHHHHH
Q 002834 656 VVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKP-TPEQYASLV 734 (875)
Q Consensus 656 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~ 734 (875)
...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|.+.+++..+. .| +...+..++
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a 88 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHH
Confidence 3457778888889999999999999988852 335667777888889999999999999998773 34 456888899
Q ss_pred HHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHH--HHhcCChhHHHHHHHHHhcc
Q 002834 735 DLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGA--CRIHHEVELGRVVANRLFEM 788 (875)
Q Consensus 735 ~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~ 788 (875)
.++...|++++|.+.++++. ..| +...+..+..+ +...|+++.|...+++..++
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 99999999999999998874 334 44555444333 66778999999888876554
No 165
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.21 E-value=0.00016 Score=72.68 Aligned_cols=227 Identities=11% Similarity=0.007 Sum_probs=154.5
Q ss_pred HcCCchHHHHHHHHHHHCCCCCCcch-HhcHHHHhhccc-chHHHHHHHHHHHHhcCCCchHHHHHHHHhHhc-C-CHHH
Q 002834 568 ENDFPNQALSLFLKLQAQGMKPDAVT-IMSLLPVCSQMA-SVHLLRQCHGYVIRACFDGVRLNGALLHLYAKC-G-SIFS 643 (875)
Q Consensus 568 ~~~~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~ 643 (875)
+.+..++|++++.++... .|+..| ++.--..+...+ .++.+..+.+.+....+++..+++.-...+.+. + ++++
T Consensus 66 ~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHH
Confidence 334445667776666653 444433 222222333444 467777777777777777777777777777766 6 7889
Q ss_pred HHHHhccCCC---CChhhHHHHHHHHHHcCChH--------HHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCc------
Q 002834 644 ASKIFQCHPQ---KDVVMLTAMIGGYAMHGMGK--------AALKVFSDMLELGVNPDHVVITAVLSACSHAGL------ 706 (875)
Q Consensus 644 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~------ 706 (875)
++++++++.+ .|..+|+--...+...|.++ ++++.++++++.. +-|...|+.....+.+.+.
T Consensus 144 EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 144 EIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchH
Confidence 9999998776 56678887777777666666 9999999999863 4466777777777777765
Q ss_pred -HHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCCh--------------------HHHHHHHHhCCC--------C
Q 002834 707 -VDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQI--------------------SDAYSLVNRMPV--------E 756 (875)
Q Consensus 707 -~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~--------~ 756 (875)
+++++++++++.. ..|+ ...|..+-..+.+.|+. .+..++..++.. .
T Consensus 223 ~~~eELe~~~~aI~---~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (349)
T 3q7a_A 223 SLQDELIYILKSIH---LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPL 299 (349)
T ss_dssp HHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCS
T ss_pred HHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCC
Confidence 7899999998877 4555 44777766677666653 455566666631 2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHh-cccCCCCccHHHHH
Q 002834 757 ADCNVWGTLLGACRIHHEVELGRVVANRLF-EMEADNIGNYVVMS 800 (875)
Q Consensus 757 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~p~~~~~~~~l~ 800 (875)
+.+..+..|+..|...|+.++|.++++.+. +.||-....+...+
T Consensus 300 ~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 300 PVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 566788888899999999999999999997 67887666555444
No 166
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.21 E-value=2.1e-06 Score=92.95 Aligned_cols=118 Identities=5% Similarity=-0.004 Sum_probs=100.7
Q ss_pred HHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcC
Q 002834 697 VLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHH 773 (875)
Q Consensus 697 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~ 773 (875)
+...+.+.|++++|.+.|+++.+ +.|+ ...|..++.+|.+.|++++|++.+++.. ..| +...|..+..++...|
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIE---LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 34456789999999999999988 4565 5689999999999999999999999884 555 5688999999999999
Q ss_pred ChhHHHHHHHHHhcccCCCCccHHHHHHH--HHhcCCchhHHHHHH
Q 002834 774 EVELGRVVANRLFEMEADNIGNYVVMSNL--YAADARWDGVVEIRK 817 (875)
Q Consensus 774 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 817 (875)
++++|++.++++++++|+++..+..++.+ +...|++++|++.++
T Consensus 89 ~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999988 889999999999876
No 167
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.21 E-value=5.9e-06 Score=73.23 Aligned_cols=96 Identities=13% Similarity=0.054 Sum_probs=86.5
Q ss_pred ChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHH
Q 002834 726 TPEQYASLVDLLARGGQISDAYSLVNRMP-VEAD----CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMS 800 (875)
Q Consensus 726 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 800 (875)
+...+..++..+...|++++|.+.+++.. ..|+ ...|..+..++...|+++.|+..++++++.+|+++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 35578889999999999999999999874 6676 577888888899999999999999999999999999999999
Q ss_pred HHHHhcCCchhHHHHHHHHHh
Q 002834 801 NLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 801 ~~~~~~g~~~~A~~~~~~~~~ 821 (875)
.+|...|++++|.+.++....
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999998887654
No 168
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.21 E-value=1.4e-06 Score=78.86 Aligned_cols=78 Identities=10% Similarity=-0.034 Sum_probs=62.6
Q ss_pred hHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCC-ccHHHHHHHHH
Q 002834 728 EQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNI-GNYVVMSNLYA 804 (875)
Q Consensus 728 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~ 804 (875)
..|..++.+|.+.|++++|+..+++.. ..| +...|..+..++...|+++.|+..++++++++|+++ .....+..+..
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~ 143 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE 143 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 477788888888899999888888774 444 567888888999999999999999999999999987 55555655543
Q ss_pred h
Q 002834 805 A 805 (875)
Q Consensus 805 ~ 805 (875)
.
T Consensus 144 ~ 144 (162)
T 3rkv_A 144 R 144 (162)
T ss_dssp H
T ss_pred H
Confidence 3
No 169
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.20 E-value=4.8e-05 Score=76.14 Aligned_cols=177 Identities=11% Similarity=-0.013 Sum_probs=129.8
Q ss_pred HHHHHHHhccCCC---CChhhHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCc-HHHHHHHH
Q 002834 641 IFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGM--GKAALKVFSDMLELGVNPDHVVITAVLSACSHAGL-VDEGLEIF 714 (875)
Q Consensus 641 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~-~~~a~~~~ 714 (875)
+++++.+++.+.. .+..+|+.-...+...|+ +++++.+++++.+.. +-|...|+.-.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 5677777776654 577899988888888884 899999999999863 4466677776667777787 69999999
Q ss_pred HHhHHHhCCCCC-hhHHHHHHHHhhcC--------------CChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhc-----
Q 002834 715 RSIEKVQGIKPT-PEQYASLVDLLARG--------------GQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIH----- 772 (875)
Q Consensus 715 ~~~~~~~~~~p~-~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~----- 772 (875)
+++.+ ..|+ ...|+....++.+. +.++++++++++.. ..| |..+|+.+.+.+...
T Consensus 169 ~~~I~---~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLIT---RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHH---HCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHH---HCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccc
Confidence 99988 3444 44666666555543 56889999998875 445 779999888777655
Q ss_pred ------CChhHHHHHHHHHhcccCCCCccHHHHHHHHH---hcCCchhHHHHHHHHHh
Q 002834 773 ------HEVELGRVVANRLFEMEADNIGNYVVMSNLYA---ADARWDGVVEIRKLMKT 821 (875)
Q Consensus 773 ------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~ 821 (875)
+-++.+++.++++++++|++.=.+..++.+.. ..|..++....+.++.+
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 34789999999999999998444333333222 35677777777777765
No 170
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.20 E-value=2.5e-06 Score=74.29 Aligned_cols=94 Identities=11% Similarity=-0.060 Sum_probs=82.2
Q ss_pred hHHHHHHHHhhcCCChHHHHHHHHhCC-CCCC-------------HHHHHHHHHHHHhcCChhHHHHHHHHHhcc-----
Q 002834 728 EQYASLVDLLARGGQISDAYSLVNRMP-VEAD-------------CNVWGTLLGACRIHHEVELGRVVANRLFEM----- 788 (875)
Q Consensus 728 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 788 (875)
..+...+..+...|++++|++.|++.. ..|+ ...|..+..++...|+++.|+..+++++++
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 345667788889999999999999873 3343 238999999999999999999999999999
Q ss_pred --cCCCCccH----HHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 789 --EADNIGNY----VVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 789 --~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
+|+++..| ...|.+|...|++++|++.+++..+
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999 9999999999999999998877654
No 171
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.17 E-value=3.1e-06 Score=87.11 Aligned_cols=146 Identities=10% Similarity=-0.059 Sum_probs=85.5
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHH
Q 002834 656 VVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVD 735 (875)
Q Consensus 656 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 735 (875)
...|..+...+.+.|++++|+..|++... ..|+... +...|+.+++...+. ...|..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 45677778888888999999999998887 3555432 233444444443221 236788899
Q ss_pred HhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHH-hcCCchhH
Q 002834 736 LLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYA-ADARWDGV 812 (875)
Q Consensus 736 ~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~A 812 (875)
+|.+.|++++|+..+++.. ..| +...|..+..++...|+++.|+..++++++++|+++..+..|+.+.. ..+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998874 445 56889999999999999999999999999999999999999988844 45677777
Q ss_pred HHHHHHHHh
Q 002834 813 VEIRKLMKT 821 (875)
Q Consensus 813 ~~~~~~~~~ 821 (875)
.++++.|-.
T Consensus 319 ~~~~~~~l~ 327 (338)
T 2if4_A 319 KEMYKGIFK 327 (338)
T ss_dssp ---------
T ss_pred HHHHHHhhC
Confidence 778777654
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.17 E-value=6.8e-06 Score=69.72 Aligned_cols=97 Identities=13% Similarity=0.037 Sum_probs=70.2
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHH
Q 002834 694 ITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACR 770 (875)
Q Consensus 694 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~ 770 (875)
+..+...+.+.|++++|...|+++.+ ..|+ ...|..++.++.+.|++++|+..+++.. ..| +...|..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQ---KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 44455667778888888888888776 3453 4577778888888888888888887764 445 4577888888888
Q ss_pred hcCChhHHHHHHHHHhcccCCCC
Q 002834 771 IHHEVELGRVVANRLFEMEADNI 793 (875)
Q Consensus 771 ~~~~~~~a~~~~~~~~~~~p~~~ 793 (875)
..|+++.|+..++++++++|+++
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCC
Confidence 88999999999999999998765
No 173
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.16 E-value=3.8e-06 Score=72.40 Aligned_cols=88 Identities=10% Similarity=0.034 Sum_probs=49.1
Q ss_pred HHHHhhcCCChHHHHHHHHhCC-CCCC-H---HHHHHHHHHHHhcCChhHHHHHHHHHhcccCCC---CccHHHHHHHHH
Q 002834 733 LVDLLARGGQISDAYSLVNRMP-VEAD-C---NVWGTLLGACRIHHEVELGRVVANRLFEMEADN---IGNYVVMSNLYA 804 (875)
Q Consensus 733 l~~~~~~~g~~~~A~~~~~~~~-~~p~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~ 804 (875)
++..+.+.|++++|.+.++++. ..|+ . ..+..+..++...|+++.|+..++++++..|++ +..+..+|.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 3444455555555555555442 1222 1 345555555556666666666666666666666 445666666666
Q ss_pred hcCCchhHHHHHHHHH
Q 002834 805 ADARWDGVVEIRKLMK 820 (875)
Q Consensus 805 ~~g~~~~A~~~~~~~~ 820 (875)
..|++++|++.++.+.
T Consensus 88 ~~g~~~~A~~~~~~~~ 103 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVA 103 (129)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 6666666666655544
No 174
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.14 E-value=1.4e-05 Score=82.17 Aligned_cols=129 Identities=8% Similarity=-0.033 Sum_probs=103.9
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----------------hhhHHHHHHHHhhcCcHHHHHHHHHHhH
Q 002834 655 DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPD----------------HVVITAVLSACSHAGLVDEGLEIFRSIE 718 (875)
Q Consensus 655 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 718 (875)
+...|..+...|.+.|++++|+..|++..+. .|+ ...|..+..++.+.|++++|+..++++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3456788888888999999999999998884 444 3678888889999999999999999998
Q ss_pred HHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHH-HHHHHHHhcc
Q 002834 719 KVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELG-RVVANRLFEM 788 (875)
Q Consensus 719 ~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~ 788 (875)
+ +.|+ ...|..++.+|...|++++|+..++++. ..| +..++..+..++...|+.+.| ...++++++.
T Consensus 224 ~---~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 224 E---LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp H---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H---hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 4454 5588899999999999999999998874 455 557788888888888988888 4566766643
No 175
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.14 E-value=2.8e-05 Score=66.88 Aligned_cols=117 Identities=14% Similarity=0.065 Sum_probs=89.7
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHH
Q 002834 655 DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASL 733 (875)
Q Consensus 655 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 733 (875)
+...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|.+.+++..+. .|+ ...+..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~ 86 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI---DPAYSKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc---CccCHHHHHHH
Confidence 34567778888888899999999999888752 335666777777888899999999999888772 344 5578888
Q ss_pred HHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCh
Q 002834 734 VDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEV 775 (875)
Q Consensus 734 ~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~ 775 (875)
+.++.+.|++++|.+.+++.. ..| +...+..+..++...|++
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 889999999999999888874 344 556777777777766654
No 176
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.13 E-value=3.6e-05 Score=84.68 Aligned_cols=168 Identities=8% Similarity=-0.070 Sum_probs=134.9
Q ss_pred CHHHHHHHhccCCC---CChhhHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcC-
Q 002834 640 SIFSASKIFQCHPQ---KDVVMLTAMIGGYAMHGM----------GKAALKVFSDMLELGVNPDHVVITAVLSACSHAG- 705 (875)
Q Consensus 640 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g- 705 (875)
.-++|++.++.+.. .+..+|+.--..+...|+ ++++++.++++.+.. +-+...|..-.-++.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 34567777776654 355678877777777776 899999999999853 334567777777788888
Q ss_pred -cHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCC-ChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhc--------
Q 002834 706 -LVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGG-QISDAYSLVNRMP-VEA-DCNVWGTLLGACRIH-------- 772 (875)
Q Consensus 706 -~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g-~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~-------- 772 (875)
+++++++.++++.+ ..|. ...|+....++.+.| .+++++++++++. ..| |..+|+....++...
T Consensus 123 ~~~~~el~~~~k~l~---~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 123 PNWARELELCARFLE---ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp CCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred ccHHHHHHHHHHHHh---hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 77999999999988 4454 457888888888888 8999999999985 455 678999988887663
Q ss_pred ------CChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchh
Q 002834 773 ------HEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDG 811 (875)
Q Consensus 773 ------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 811 (875)
+.++.+.+.++++++++|++..+|..+.+++...|+.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 457899999999999999999999999999999998555
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.13 E-value=2e-05 Score=67.78 Aligned_cols=103 Identities=11% Similarity=-0.046 Sum_probs=64.5
Q ss_pred HHHHHhhcCcHHHHHHHHHHhHHHhCCCCCh----hHHHHHHHHhhcCCChHHHHHHHHhCC-CCCC----HHHHHHHHH
Q 002834 697 VLSACSHAGLVDEGLEIFRSIEKVQGIKPTP----EQYASLVDLLARGGQISDAYSLVNRMP-VEAD----CNVWGTLLG 767 (875)
Q Consensus 697 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~ 767 (875)
+...+...|++++|.+.|+++.+. .|+. ..+..++.++.+.|++++|...++++. ..|+ +..+..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 344555666666666666666552 2222 255556666666666666666666552 2232 455666777
Q ss_pred HHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHH
Q 002834 768 ACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNL 802 (875)
Q Consensus 768 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 802 (875)
++...|+++.|+..++++++..|+++........+
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 77788888888888888888888876655544443
No 178
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.10 E-value=1.5e-05 Score=66.30 Aligned_cols=100 Identities=13% Similarity=0.027 Sum_probs=64.6
Q ss_pred hhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC---CHHHHHHHHH
Q 002834 692 VVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP-VEA---DCNVWGTLLG 767 (875)
Q Consensus 692 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p---~~~~~~~l~~ 767 (875)
..+..+...+...|++++|...|+++.+. .+.+...+..++.++...|++++|.+.+++.. ..| +...|..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34444555666666666666666666552 11234456666666777777777777666653 333 3566777777
Q ss_pred HHHhc-CChhHHHHHHHHHhcccCCCC
Q 002834 768 ACRIH-HEVELGRVVANRLFEMEADNI 793 (875)
Q Consensus 768 ~~~~~-~~~~~a~~~~~~~~~~~p~~~ 793 (875)
++... |+++.|++.++++++..|.++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 77777 888888888888888877664
No 179
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.10 E-value=1.8e-06 Score=72.98 Aligned_cols=79 Identities=14% Similarity=0.057 Sum_probs=40.4
Q ss_pred CChHHHHHHHHhCC-C---CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHH
Q 002834 741 GQISDAYSLVNRMP-V---EAD-CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEI 815 (875)
Q Consensus 741 g~~~~A~~~~~~~~-~---~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 815 (875)
|++++|+..+++.. . .|+ ..+|..+..++...|+++.|+..++++++++|+++..+..++.+|...|++++|++.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 44444554444442 2 132 244555555555555555555555555555555555555555555556666665555
Q ss_pred HHHH
Q 002834 816 RKLM 819 (875)
Q Consensus 816 ~~~~ 819 (875)
+++.
T Consensus 84 ~~~a 87 (117)
T 3k9i_A 84 LLKI 87 (117)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 180
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.09 E-value=4.6e-06 Score=78.41 Aligned_cols=145 Identities=10% Similarity=-0.039 Sum_probs=80.9
Q ss_pred HHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC---CCh----------------hhH
Q 002834 599 PVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ---KDV----------------VML 659 (875)
Q Consensus 599 ~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~----------------~~~ 659 (875)
......+.++.+.+.++......+.....+..+...+.+.|++++|...|++... .+. .+|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp ----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 3444556677777776655554444566677888999999999999999987553 222 455
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhh
Q 002834 660 TAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLA 738 (875)
Q Consensus 660 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 738 (875)
..+..+|...|++++|+..+++..+.. +.+...+..+..++...|++++|.+.|++..+ +.|+ ...+..+..++.
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS---LNPNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH---HCCCcHHHHHHHHHHHH
Confidence 566666666666666666666666531 22344455555566666666666666666554 2333 234444444444
Q ss_pred cCCChHHHH
Q 002834 739 RGGQISDAY 747 (875)
Q Consensus 739 ~~g~~~~A~ 747 (875)
..|+.+++.
T Consensus 168 ~~~~~~~~~ 176 (198)
T 2fbn_A 168 KLKEARKKD 176 (198)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHH
Confidence 444444433
No 181
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.08 E-value=2e-05 Score=67.56 Aligned_cols=60 Identities=8% Similarity=-0.003 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhhcCcHHHHHHHHHHhHH
Q 002834 658 MLTAMIGGYAMHGMGKAALKVFSDMLELGVNPD-HVVITAVLSACSHAGLVDEGLEIFRSIEK 719 (875)
Q Consensus 658 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 719 (875)
++..+...+.+.|++++|++.|++.++. .|+ ...|..+..+|.+.|++++|++.+++..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4555666666667777777777666663 333 44455555666666666666666666654
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.08 E-value=5.3e-06 Score=86.28 Aligned_cols=136 Identities=7% Similarity=-0.024 Sum_probs=100.5
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHH
Q 002834 657 VMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVD 735 (875)
Q Consensus 657 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 735 (875)
..|..+...+.+.|++++|+..|++.++. .|+.. .....+++. ...|. ...|..++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~~~~----------~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDADGA----------KLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHHHHG----------GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChHHHH----------HHHHHHHHHHHHHHH
Confidence 45666666777777777777777766541 11100 000111110 12232 457888999
Q ss_pred HhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHH
Q 002834 736 LLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVV 813 (875)
Q Consensus 736 ~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 813 (875)
+|.+.|++++|++.++++. ..| +...|..+..++...|+++.|+..++++++++|+++..+..++.++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998874 555 56888899999999999999999999999999999999999999999999888887
Q ss_pred H
Q 002834 814 E 814 (875)
Q Consensus 814 ~ 814 (875)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 6
No 183
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.06 E-value=1.4e-05 Score=79.77 Aligned_cols=112 Identities=8% Similarity=-0.080 Sum_probs=93.3
Q ss_pred ChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCC-ChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHH
Q 002834 690 DHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKP-TPEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLL 766 (875)
Q Consensus 690 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~ 766 (875)
+...+..+...+...|++++|...|+++.+ ..| +...|..++.+|.+.|++++|++.+++.. ..| +...|..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAIT---RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 456677788899999999999999999987 355 45688999999999999999999998874 556 457888888
Q ss_pred HHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHH
Q 002834 767 GACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYA 804 (875)
Q Consensus 767 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 804 (875)
.++...|+++.|+..++++++++|+++..+....+...
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 117 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL 117 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH
Confidence 99999999999999999999999988766554444443
No 184
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.06 E-value=9.1e-06 Score=70.05 Aligned_cols=94 Identities=9% Similarity=0.083 Sum_probs=74.7
Q ss_pred hHHHHHHHHhhcCCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCC-------CccHHH
Q 002834 728 EQYASLVDLLARGGQISDAYSLVNRMP--VEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADN-------IGNYVV 798 (875)
Q Consensus 728 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~ 798 (875)
..+..++..+...|++++|...+++.. .+.+...|..+...+...|+++.|...++++++..|++ +..+..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 356667777777777777777777663 23356777788888888899999999999999988876 677889
Q ss_pred HHHHHHhcCCchhHHHHHHHHHh
Q 002834 799 MSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 799 l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
++.+|...|++++|.+.++...+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 99999999999999998877654
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.04 E-value=3.7e-06 Score=70.98 Aligned_cols=92 Identities=11% Similarity=-0.007 Sum_probs=64.1
Q ss_pred cCcHHHHHHHHHHhHHHhCC---CCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhH
Q 002834 704 AGLVDEGLEIFRSIEKVQGI---KPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVEL 777 (875)
Q Consensus 704 ~g~~~~a~~~~~~~~~~~~~---~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~ 777 (875)
.|++++|+..|+++.+ . .|+ ...+..++.+|.+.|++++|++.+++.. ..| ++.++..+..++...|+++.
T Consensus 3 ~g~~~~A~~~~~~al~---~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIA---SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp ----CCCHHHHHHHHS---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCcHHHHHHHHHHHHH---cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHH
Confidence 4666777777777655 3 233 3467777777777888888887777764 334 45777788888888899999
Q ss_pred HHHHHHHHhcccCCCCccHHH
Q 002834 778 GRVVANRLFEMEADNIGNYVV 798 (875)
Q Consensus 778 a~~~~~~~~~~~p~~~~~~~~ 798 (875)
|+..++++++..|+++.....
T Consensus 80 A~~~~~~al~~~p~~~~~~~~ 100 (117)
T 3k9i_A 80 GVELLLKIIAETSDDETIQSY 100 (117)
T ss_dssp HHHHHHHHHHHHCCCHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHH
Confidence 999999999999988765443
No 186
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.03 E-value=1.1e-05 Score=69.40 Aligned_cols=115 Identities=10% Similarity=-0.011 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHH
Q 002834 657 VMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDL 736 (875)
Q Consensus 657 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 736 (875)
..|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|..+++++.+.. |+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~---------- 70 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG---RE---------- 70 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---HH----------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc---cc----------
Confidence 345555555556666666666666655532 2233444444555555555555555555554421 10
Q ss_pred hhcCCChHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHH
Q 002834 737 LARGGQISDAYSLVNRMPVEAD----CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYA 804 (875)
Q Consensus 737 ~~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 804 (875)
..++ ..+|..+..++...|+++.|...++++++..| ++.....++.++.
T Consensus 71 ------------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 71 ------------------NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp ------------------STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred ------------------cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 0111 34555666666677777777777777777776 4555555554443
No 187
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.01 E-value=1.1e-05 Score=72.58 Aligned_cols=136 Identities=10% Similarity=0.034 Sum_probs=72.8
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCh----hhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHH
Q 002834 657 VMLTAMIGGYAMHGMGKAALKVFSDMLELGVN-PDH----VVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYA 731 (875)
Q Consensus 657 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 731 (875)
.++..+...+...|++++|+..+++..+.... ++. ..+..+...+...|++++|.++++++.+...-.++..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~--- 86 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA--- 86 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH---
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH---
Confidence 34555666666666666666666665542100 110 2344444455555555555555555443211001100
Q ss_pred HHHHHhhcCCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCC------CccHHHHHHHHHh
Q 002834 732 SLVDLLARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADN------IGNYVVMSNLYAA 805 (875)
Q Consensus 732 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~ 805 (875)
.....+..+...+...|+++.|+..+++++++.+.. +..+..++.+|..
T Consensus 87 -------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 141 (164)
T 3ro3_A 87 -------------------------VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA 141 (164)
T ss_dssp -------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHH
Confidence 002344455555666666666666666666553221 3356778888888
Q ss_pred cCCchhHHHHHHHHH
Q 002834 806 DARWDGVVEIRKLMK 820 (875)
Q Consensus 806 ~g~~~~A~~~~~~~~ 820 (875)
.|++++|.+.++...
T Consensus 142 ~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 142 LGNHDQAMHFAEKHL 156 (164)
T ss_dssp HTCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH
Confidence 888888888766544
No 188
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.00 E-value=1.1e-05 Score=82.86 Aligned_cols=151 Identities=10% Similarity=0.009 Sum_probs=81.9
Q ss_pred CchHHHHHHHHhHhcCCHHHHHHHhccCCC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 002834 624 GVRLNGALLHLYAKCGSIFSASKIFQCHPQ--KDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSAC 701 (875)
Q Consensus 624 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~ 701 (875)
....+..+...+.+.|++++|...|++... |+... +...|+.+++...+. ...|..+..++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 345567888899999999999999987654 22211 122233333332221 13677788889
Q ss_pred hhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCCH-HHHHHHHHHH-HhcCChhH
Q 002834 702 SHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEADC-NVWGTLLGAC-RIHHEVEL 777 (875)
Q Consensus 702 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~~-~~~~~~~~ 777 (875)
.+.|++++|+..++++.+ +.|+ ...|..++.+|...|++++|...++++. ..|+. .++..+.... ...+..+.
T Consensus 241 ~~~g~~~~A~~~~~~al~---~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLT---EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HTTTCCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987 4554 5688999999999999999999999985 56644 5555555553 34567888
Q ss_pred HHHHHHHHhcccCCCCc
Q 002834 778 GRVVANRLFEMEADNIG 794 (875)
Q Consensus 778 a~~~~~~~~~~~p~~~~ 794 (875)
+...++++++..|+++.
T Consensus 318 a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 318 QKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp -----------------
T ss_pred HHHHHHHhhCCCCCCCC
Confidence 99999999999998764
No 189
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.00 E-value=2.7e-05 Score=83.81 Aligned_cols=186 Identities=8% Similarity=-0.045 Sum_probs=131.0
Q ss_pred HhHhcCCHHHHHHHhccCCC--C---C---------------hhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCChh
Q 002834 634 LYAKCGSIFSASKIFQCHPQ--K---D---------------VVMLTAMIGGYAMHGMGKAALKVFSDMLELG-VNPDHV 692 (875)
Q Consensus 634 ~~~~~g~~~~A~~~~~~~~~--~---~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~ 692 (875)
.+.+.|++++|.+.|..+.+ + + ..++..++..|...|++++|.+.+.++...- -.++..
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 34566777777777765432 0 0 1246778899999999999999998876521 112221
Q ss_pred ----hHHHHHHHHhhcCcHHHHHHHHHHhHHHh---CCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-------CCC
Q 002834 693 ----VITAVLSACSHAGLVDEGLEIFRSIEKVQ---GIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-------VEA 757 (875)
Q Consensus 693 ----~~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p 757 (875)
..+.+...+...|+.++|.++++...... +..+. ...+..++..|...|++++|..++++.. .+|
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 22223335556789999999998876532 23333 3478889999999999999999988762 122
Q ss_pred C-HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCC-------ccHHHHHHHHHhcCCchhHHHHHHHH
Q 002834 758 D-CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNI-------GNYVVMSNLYAADARWDGVVEIRKLM 819 (875)
Q Consensus 758 ~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~ 819 (875)
. ..++..++..|...||+++|+..+++++...|..+ ..+..++.+|...|+|++|.+.+...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 2 35677888889999999999999999988754432 34667788889999999999864443
No 190
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.00 E-value=9.4e-06 Score=67.60 Aligned_cols=92 Identities=9% Similarity=-0.104 Sum_probs=76.7
Q ss_pred ChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCC------CccHH
Q 002834 726 TPEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADN------IGNYV 797 (875)
Q Consensus 726 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 797 (875)
+...+..++..+.+.|++++|++.+++.. ..| ++..|..+..++...|+++.|+..++++++++|++ +..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 34567778888888889998888888774 344 56888888899999999999999999999999998 77788
Q ss_pred HHHHHHHhcCCchhHHHHHH
Q 002834 798 VMSNLYAADARWDGVVEIRK 817 (875)
Q Consensus 798 ~l~~~~~~~g~~~~A~~~~~ 817 (875)
.++.++...|++++|++.++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 89999999998888876554
No 191
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.95 E-value=3e-05 Score=83.02 Aligned_cols=124 Identities=10% Similarity=-0.011 Sum_probs=93.5
Q ss_pred HHhhcCcHHHHHHHHHHhHHHhC--CC---CC-hhHHHHHHHHhhcCCChHHHHHHHHhCC---------CCCCH-HHHH
Q 002834 700 ACSHAGLVDEGLEIFRSIEKVQG--IK---PT-PEQYASLVDLLARGGQISDAYSLVNRMP---------VEADC-NVWG 763 (875)
Q Consensus 700 a~~~~g~~~~a~~~~~~~~~~~~--~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~-~~~~ 763 (875)
.+...|++++|..++++..+... +. |+ ..+++.|+.+|...|++++|..++++.. ..|+. .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34567888888888877765432 22 22 3477888888888888888888877752 34443 6678
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhcc-----cCCCCcc---HHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 002834 764 TLLGACRIHHEVELGRVVANRLFEM-----EADNIGN---YVVMSNLYAADARWDGVVEIRKLMKTRD 823 (875)
Q Consensus 764 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 823 (875)
.|...|..+|++++|+..+++++++ .|++|.+ ...|+..+.++|++.+|+.+++.++++-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999999999998874 6777654 4578888999999999999999998754
No 192
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.89 E-value=3.5e-05 Score=62.62 Aligned_cols=64 Identities=19% Similarity=0.186 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 758 DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 758 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
++..|..+..++...|+++.|+..++++++++|+++.+|..+|.+|...|++++|++.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5678888889999999999999999999999999999999999999999999999998776553
No 193
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.89 E-value=4.5e-05 Score=68.55 Aligned_cols=95 Identities=13% Similarity=0.020 Sum_probs=72.2
Q ss_pred chHHHHHHHHhHhcCCHHHHHHHhccCCC-----CCh----hhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----
Q 002834 625 VRLNGALLHLYAKCGSIFSASKIFQCHPQ-----KDV----VMLTAMIGGYAMHGMGKAALKVFSDMLELGV-NPD---- 690 (875)
Q Consensus 625 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~---- 690 (875)
..++..+...|...|++++|...+++..+ ++. .++..+...+...|++++|+..+++..+... .++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 45678888999999999999999997664 221 4788899999999999999999999876311 111
Q ss_pred hhhHHHHHHHHhhcCcHHHHHHHHHHhHH
Q 002834 691 HVVITAVLSACSHAGLVDEGLEIFRSIEK 719 (875)
Q Consensus 691 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 719 (875)
...+..+...+...|++++|.+++++..+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 117 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLA 117 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 23455666677788888888888877755
No 194
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.87 E-value=3.3e-05 Score=61.37 Aligned_cols=81 Identities=12% Similarity=0.194 Sum_probs=64.2
Q ss_pred hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHH
Q 002834 727 PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYA 804 (875)
Q Consensus 727 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 804 (875)
...+..++..+...|++++|+..+++.. ..| +...|..+..++...|+++.|+..++++++++|+++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 3456667777777788888887777663 333 55778888888888999999999999999999999999999998887
Q ss_pred hcC
Q 002834 805 ADA 807 (875)
Q Consensus 805 ~~g 807 (875)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 195
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.86 E-value=5.2e-05 Score=60.02 Aligned_cols=68 Identities=9% Similarity=0.103 Sum_probs=59.9
Q ss_pred CCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 002834 756 EADCNVWGTLLGACRIHHE---VELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTRD 823 (875)
Q Consensus 756 ~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 823 (875)
++++..|..+..++...++ .+.|+..++++++++|+++.+...+|.++++.|++++|++.++++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4567888888888765554 7999999999999999999999999999999999999999999988653
No 196
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.84 E-value=5.1e-05 Score=78.86 Aligned_cols=112 Identities=4% Similarity=-0.037 Sum_probs=83.9
Q ss_pred hhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 002834 691 HVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMPVEA-DCNVWGTLLGAC 769 (875)
Q Consensus 691 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~ 769 (875)
...+..+...+.+.|++++|++.|+++.+.. |+.. .....+++. ...| +...|..+..++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~~----------~~~~~~~~~------~~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGSR----------AAAEDADGA------KLQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHHH----------HHSCHHHHG------GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcCc----------cccChHHHH------HHHHHHHHHHHHHHHHH
Confidence 3456667777888888888888888776621 1100 001111111 1223 347788899999
Q ss_pred HhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 770 RIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 770 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
...|+++.|+..++++++++|+++.+|..+|.+|...|++++|++.+++..+
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998877654
No 197
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.83 E-value=4.6e-05 Score=82.06 Aligned_cols=64 Identities=5% Similarity=-0.087 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 002834 759 CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTR 822 (875)
Q Consensus 759 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 822 (875)
...|..+..++...|+++.|+..++++++++|+++.+|..+|.+|...|++++|+..+++..+.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4678888999999999999999999999999999999999999999999999999998887653
No 198
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.77 E-value=0.00043 Score=74.26 Aligned_cols=121 Identities=9% Similarity=-0.086 Sum_probs=71.8
Q ss_pred HHhHhcCCHHHHHHHhccCCC--------C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC----CCC-hhhHHHHH
Q 002834 633 HLYAKCGSIFSASKIFQCHPQ--------K-DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGV----NPD-HVVITAVL 698 (875)
Q Consensus 633 ~~~~~~g~~~~A~~~~~~~~~--------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~-~~~~~~ll 698 (875)
..+...|+.+.|..+++.... + -..++..+...|...|++++|+.++++....-. .|. ...+..++
T Consensus 103 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 182 (434)
T 4b4t_Q 103 KFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLES 182 (434)
T ss_dssp HHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHH
Confidence 334445556666555553321 1 123566677777777888888877777654211 111 23466666
Q ss_pred HHHhhcCcHHHHHHHHHHhHHHhCCCCC-----hhHHHHHHHHhhcCCChHHHHHHHHhC
Q 002834 699 SACSHAGLVDEGLEIFRSIEKVQGIKPT-----PEQYASLVDLLARGGQISDAYSLVNRM 753 (875)
Q Consensus 699 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 753 (875)
..|...|++++|..++++......-.++ ...+..++..+...|++++|...+.+.
T Consensus 183 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 183 KVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 6777888888888887776543211111 235666777777778887777665443
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.75 E-value=1.3e-05 Score=69.66 Aligned_cols=48 Identities=8% Similarity=0.059 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHhcccCCCCccHHHHHHHHHhcC-----------CchhHHHHHHHHHhC
Q 002834 775 VELGRVVANRLFEMEADNIGNYVVMSNLYAADA-----------RWDGVVEIRKLMKTR 822 (875)
Q Consensus 775 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~ 822 (875)
++.|+..++++++++|+++.+|..+|++|...| ++++|++.+++..+.
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 579999999999999999999999999999875 899999988877653
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.70 E-value=4.6e-05 Score=63.88 Aligned_cols=76 Identities=7% Similarity=-0.017 Sum_probs=56.4
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 746 AYSLVNRM-PVEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 746 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
|++.+++. ...| +...|..+...+...|+++.|+..++++++++|+++..|..+|.+|...|++++|++.++...+
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444 2334 4567777777788888888888888888888888888888888888888888888887766544
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.65 E-value=0.00031 Score=60.94 Aligned_cols=110 Identities=5% Similarity=-0.075 Sum_probs=62.3
Q ss_pred cHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHH
Q 002834 706 LVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMPVEADCNVWGTLLGACRI----HHEVELGRVV 781 (875)
Q Consensus 706 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~ 781 (875)
+.++|.++|++..+ .+ .|+. . |...|...+.+++|++++++.....++..+..|...|.. .+|.++|...
T Consensus 10 d~~~A~~~~~~aa~-~g-~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACE-LN-EMFG--C--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHH-TT-CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHc-CC-CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 45555555555544 22 1111 1 455555555555555555555433445555555555554 5566666666
Q ss_pred HHHHhcccCCCCccHHHHHHHHHh----cCCchhHHHHHHHHHhCC
Q 002834 782 ANRLFEMEADNIGNYVVMSNLYAA----DARWDGVVEIRKLMKTRD 823 (875)
Q Consensus 782 ~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 823 (875)
++++.+. .++..+..|+.+|.. .+++++|.+.+++..+.|
T Consensus 84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666655 455666677777776 677777777666665544
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.65 E-value=2.5e-05 Score=67.90 Aligned_cols=71 Identities=8% Similarity=0.043 Sum_probs=42.4
Q ss_pred HHHHHHHHhCC-CCC-CHHHHHHHHHHHHhc-----------CChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCch
Q 002834 744 SDAYSLVNRMP-VEA-DCNVWGTLLGACRIH-----------HEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWD 810 (875)
Q Consensus 744 ~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 810 (875)
++|+..+++.. +.| +..+|..+..+|... |++++|++.++++++++|+++.....+. ..+
T Consensus 63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~-------~~~ 135 (158)
T 1zu2_A 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE-------MTA 135 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH-------HHH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH-------HHH
Confidence 35555555442 333 234555555555544 5899999999999999999864433322 235
Q ss_pred hHHHHHHHHHh
Q 002834 811 GVVEIRKLMKT 821 (875)
Q Consensus 811 ~A~~~~~~~~~ 821 (875)
+|-++.-.+..
T Consensus 136 ka~el~~~~~~ 146 (158)
T 1zu2_A 136 KAPQLHAEAYK 146 (158)
T ss_dssp THHHHHHHHHH
T ss_pred hCHhccCcccc
Confidence 55555444443
No 203
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.57 E-value=0.00065 Score=74.70 Aligned_cols=149 Identities=15% Similarity=0.146 Sum_probs=119.7
Q ss_pred HHcC-ChHHHHHHHHHHHHCCCCCChh-hHHHHHHHHhhcCc----------HHHHHHHHHHhHHHhCCCCC-hhHHHHH
Q 002834 667 AMHG-MGKAALKVFSDMLELGVNPDHV-VITAVLSACSHAGL----------VDEGLEIFRSIEKVQGIKPT-PEQYASL 733 (875)
Q Consensus 667 ~~~g-~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~~~~p~-~~~~~~l 733 (875)
.+.| ..++|++.++++.. +.|+.. .|+.--.++.+.|+ ++++++.++++.+ ..|. ...|..-
T Consensus 39 ~~~~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~---~~pK~y~aW~hR 113 (567)
T 1dce_A 39 RQAGELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR---VNPKSYGTWHHR 113 (567)
T ss_dssp HHTTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 3444 45789999999998 466654 46655556666666 9999999999987 4555 4488888
Q ss_pred HHHhhcCC--ChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcC-ChhHHHHHHHHHhcccCCCCccHHHHHHHHHhc--
Q 002834 734 VDLLARGG--QISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHH-EVELGRVVANRLFEMEADNIGNYVVMSNLYAAD-- 806 (875)
Q Consensus 734 ~~~~~~~g--~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-- 806 (875)
..++.+.| ++++++++++++. ..| +..+|+.-..+....| ..+.+.+.++++++.+|.|..+|...+.++...
T Consensus 114 ~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~ 193 (567)
T 1dce_A 114 CWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHP 193 (567)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcc
Confidence 88899999 7799999999995 444 6799999999988888 899999999999999999999999999998874
Q ss_pred ------------CCchhHHHHHHHHH
Q 002834 807 ------------ARWDGVVEIRKLMK 820 (875)
Q Consensus 807 ------------g~~~~A~~~~~~~~ 820 (875)
+++++|++..+...
T Consensus 194 ~~~~~~~~~~~~~~~~eel~~~~~ai 219 (567)
T 1dce_A 194 QPDSGPQGRLPENVLLKELELVQNAF 219 (567)
T ss_dssp CCCSSSCCSSCHHHHHHHHHHHHHHH
T ss_pred cccccccccccHHHHHHHHHHHHHHH
Confidence 55688888655443
No 204
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.56 E-value=0.00014 Score=77.80 Aligned_cols=115 Identities=9% Similarity=-0.068 Sum_probs=89.1
Q ss_pred HhhcCCChHHHHHHHHhCC---------CCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhcc-----cCCCCc---cHH
Q 002834 736 LLARGGQISDAYSLVNRMP---------VEADC-NVWGTLLGACRIHHEVELGRVVANRLFEM-----EADNIG---NYV 797 (875)
Q Consensus 736 ~~~~~g~~~~A~~~~~~~~---------~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~~---~~~ 797 (875)
.+..+|++++|+.++++.. ..|+. .++++|..+|...|++++|+..++++++. .|++|. .+.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4567899999999987762 23333 67889999999999999999999999875 566654 678
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHhCCCcCCCceeEEEeCCEEeEEecCCCCCCChHHHHHHHHHHHHHHHh
Q 002834 798 VMSNLYAADARWDGVVEIRKLMKTRDLKKPAACSWIEVERKNNAFMAGDYSHPRRDMIYWVLSILDEQIKD 868 (875)
Q Consensus 798 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~ 868 (875)
.||.+|..+|++++|+.++++..+.. .+ ..| .+||...++..+|......+.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~-~~----------------~lG-~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAIL-LV----------------THG-PSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH-HH----------------HTC-TTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHH-HH----------------HhC-CCChHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999877654321 11 122 3699999999999888766554
No 205
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.46 E-value=0.00023 Score=58.91 Aligned_cols=65 Identities=5% Similarity=-0.109 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 002834 758 DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTR 822 (875)
Q Consensus 758 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 822 (875)
+...|..+...+...|+++.|+..++++++++|+++..+..+|.+|...|++++|++.+++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 45678888999999999999999999999999999999999999999999999999988877653
No 206
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.36 E-value=0.00031 Score=74.06 Aligned_cols=114 Identities=12% Similarity=0.104 Sum_probs=79.7
Q ss_pred hhcCCChHHHHHHHHhCC------CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhcc-----cCCCCc---cHHH
Q 002834 737 LARGGQISDAYSLVNRMP------VEAD----CNVWGTLLGACRIHHEVELGRVVANRLFEM-----EADNIG---NYVV 798 (875)
Q Consensus 737 ~~~~g~~~~A~~~~~~~~------~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~~---~~~~ 798 (875)
+.++|++++|++++++.. +.|+ ..+++++..+|...|++++|+..++++++. .|++|. .+..
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 445566666666665441 2222 255677777788888888888888888764 455554 5788
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhCCCcCCCceeEEEeCCEEeEEecCCCCCCChHHHHHHHHHHHHHHHh
Q 002834 799 MSNLYAADARWDGVVEIRKLMKTRDLKKPAACSWIEVERKNNAFMAGDYSHPRRDMIYWVLSILDEQIKD 868 (875)
Q Consensus 799 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~ 868 (875)
||.+|..+|++++|+.++++..+. ..+ ..| .+||...+++..|++....|+.
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i-~~~----------------~lG-~~Hp~~~~~~~~l~~~~~e~~~ 428 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDI-MRV----------------THG-REHSLIEDLILLLEECDANIRA 428 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-HHH----------------HTC-TTSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHH-HHH----------------hcC-CCChHHHHHHHHHHHHHHHHhc
Confidence 999999999999999987665432 111 122 3799999999999998887763
No 207
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.29 E-value=0.0028 Score=54.77 Aligned_cols=112 Identities=8% Similarity=-0.087 Sum_probs=91.5
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhc----CCChHH
Q 002834 670 GMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLAR----GGQISD 745 (875)
Q Consensus 670 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 745 (875)
++.++|+++|++..+.| .|+.. +...|...+.+++|.++|++..+ . -+...+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~-~---g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACE-L---NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHc-C---CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46789999999999887 44433 66677788889999999999877 2 356677788888887 889999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhcccC
Q 002834 746 AYSLVNRMPVEADCNVWGTLLGACRI----HHEVELGRVVANRLFEMEA 790 (875)
Q Consensus 746 A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p 790 (875)
|.+++++.....++..+..|...|.. .+|.++|...++++.+...
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999998655677888888888887 7899999999999988753
No 208
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.25 E-value=0.00054 Score=54.07 Aligned_cols=63 Identities=14% Similarity=0.233 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 759 CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 759 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
...|..+...+...|+++.|+..++++++.+|+++..+..++.+|...|++++|++.+++...
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 467888888899999999999999999999999999999999999999999999998877654
No 209
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.23 E-value=0.0006 Score=56.85 Aligned_cols=81 Identities=10% Similarity=-0.070 Sum_probs=52.1
Q ss_pred HHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 002834 710 GLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP-VEA-DCNVWGTLLGACRIHHEVELGRVVANRLF 786 (875)
Q Consensus 710 a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 786 (875)
|++.|+++.+ ..|+ ...+..++.+|.+.|++++|+..+++.. ..| +...|..+..++...|+++.|+..+++++
T Consensus 4 a~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLA---QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHT---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555533 3343 3466666666667777777776666653 233 45667777777777888888888888888
Q ss_pred cccCCCC
Q 002834 787 EMEADNI 793 (875)
Q Consensus 787 ~~~p~~~ 793 (875)
++.|.+.
T Consensus 81 ~~~~~~~ 87 (115)
T 2kat_A 81 AAAQSRG 87 (115)
T ss_dssp HHHHHHT
T ss_pred Hhccccc
Confidence 8777543
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.20 E-value=0.0004 Score=73.02 Aligned_cols=83 Identities=11% Similarity=0.075 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhcc-----cCCCCc---cHHHHHHHHHhcCCchhHHHHHHHHHhCCCcCCCcee
Q 002834 760 NVWGTLLGACRIHHEVELGRVVANRLFEM-----EADNIG---NYVVMSNLYAADARWDGVVEIRKLMKTRDLKKPAACS 831 (875)
Q Consensus 760 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s 831 (875)
.++++|..+|...|++++|+..++++++. .|++|. .+..||.+|..+|++++|+.++++..+.. .+
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~-~~----- 414 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIM-EV----- 414 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HH-----
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH-HH-----
Confidence 45666777777777777777777777653 455544 57889999999999999999876654321 11
Q ss_pred EEEeCCEEeEEecCCCCCCChHHHHHHHH
Q 002834 832 WIEVERKNNAFMAGDYSHPRRDMIYWVLS 860 (875)
Q Consensus 832 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 860 (875)
.. ..+||...+++..|+
T Consensus 415 -----------~l-G~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 415 -----------AH-GKDHPYISEIKQEIE 431 (433)
T ss_dssp -----------HT-CTTCHHHHHHHHHHH
T ss_pred -----------Hc-CCCChHHHHHHHHHh
Confidence 12 236898888877765
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.11 E-value=0.006 Score=61.16 Aligned_cols=60 Identities=10% Similarity=0.089 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHH
Q 002834 758 DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKL 818 (875)
Q Consensus 758 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 818 (875)
++.++..+...+...|+++.|+..++++++++|. ...|..+|+++.-.|++++|.+.+..
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~ 335 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLT 335 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4455555555555556777777777777777653 44556666777777777777765433
No 212
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.11 E-value=0.001 Score=67.80 Aligned_cols=118 Identities=14% Similarity=0.099 Sum_probs=86.9
Q ss_pred CchhHHHHHHHHhcCCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHhhccCCcchhhhHHHHHHHhCCCCCcchhhHH
Q 002834 108 DPVTWNILLSGFACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSACARLGGIFAGKSLHAYVIKFGLERHTLVGNSL 187 (875)
Q Consensus 108 ~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 187 (875)
.+..|..+-.+....+ ...+|++.| .+ .-|+..|..++.++.+.|.++.-...+...++. ..++.+=+.|
T Consensus 53 ~p~VWs~LgkAqL~~~-~v~eAIdsy---Ik----A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteL 122 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKG-MVKEAIDSY---IK----ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETEL 122 (624)
T ss_dssp CCCCSSSHHHHTTTSS-SCTTTTTSS---CC----CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHH
T ss_pred CccHHHHHHHHHHccC-chHHHHHHH---Hh----CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHH
Confidence 3456778888888887 777776544 12 347788999999999999999888888766554 4555667789
Q ss_pred HHHhHhcCChhHHHHHhccCCCCCeeeHHHHHHHHHcCCCcchHHHHHHHH
Q 002834 188 TSMYAKRGLVHDAYSVFDSIEDKDVVSWNAVISGLSENKVLGDAFRLFSWM 238 (875)
Q Consensus 188 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m 238 (875)
+-+|++.+++.+-.+++. .||..-...+-.-|...|.++.|.-+|..+
T Consensus 123 i~ayAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~i 170 (624)
T 3lvg_A 123 IFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 170 (624)
T ss_dssp HHHHHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGS
T ss_pred HHHHHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhC
Confidence 999999998766544443 367777777788888888888887776554
No 213
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.08 E-value=0.03 Score=57.32 Aligned_cols=238 Identities=11% Similarity=0.109 Sum_probs=158.4
Q ss_pred CCchhhhHHHHHHHccCCchHHHHhhccCCCCCchhHHHHHHHHhcCCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHH
Q 002834 76 SCQAVSKALLNLYAKCGVIDDCYKLFGQVDNTDPVTWNILLSGFACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSA 155 (875)
Q Consensus 76 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~ 155 (875)
..+.+|+.|..+..+.+.+.+|+.-|= +..|+..|..+|.+..+.| .+++-+..+.-.++.. -++..=+.|+-+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~-~~edLv~yL~MaRk~~---ke~~IDteLi~a 125 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSG-NWEELVKYLQMARKKA---RESYVETELIFA 125 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSS-CCTTHHHHHHTTSTTC---CSTTTTHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHh---cccccHHHHHHH
Confidence 467789999999999999999887763 4467788889999999999 9999988887776653 445566789999
Q ss_pred hhccCCcchhhhHHHHHHHhCCCCCcchhhHHHHHhHhcCChhHHHHHhccCCC------------------------CC
Q 002834 156 CARLGGIFAGKSLHAYVIKFGLERHTLVGNSLTSMYAKRGLVHDAYSVFDSIED------------------------KD 211 (875)
Q Consensus 156 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------------------~~ 211 (875)
+++.+++.+-.+++. .|+..-...+.+-+...|.++.|.-+|..+.. .+
T Consensus 126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns 198 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS 198 (624)
T ss_dssp HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCS
T ss_pred HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999888777653 47776777778888888888888888877641 47
Q ss_pred eeeHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCChhhHHhHHHHhccCCccccccchhHHHHHHHHhcccCCchhHhhh
Q 002834 212 VVSWNAVISGLSENKVLGDAFRLFSWMLTEPIKPNYATILNILPICASLDEDVGYFFGREIHCYVLRRAELIADVSVCNA 291 (875)
Q Consensus 212 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (875)
+.||-.+-.+|...+.+.-|.-.--.+.- .|+ -+..++..+...| -+++...++...+ |.......+|+-
T Consensus 199 ~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G---~f~ELIsLlEagl--glErAHmGmFTE 268 (624)
T 3lvg_A 199 TRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRG---YFEELITMLEAAL--GLERAHMGMFTE 268 (624)
T ss_dssp SCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTC---CCTTSTTTHHHHT--TSTTCCHHHHHH
T ss_pred hhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCC---CHHHHHHHHHHHh--CCCchhHHHHHH
Confidence 78899988888888887776654333321 111 1112333333333 3333333333332 223335667777
Q ss_pred HHHHhHhcCChhHHHHHhhhcCC----C-------CccchHHHHHHHHcCCCHHHHH
Q 002834 292 LVSFYLRFGRTEEAELLFRRMKS----R-------DLVSWNAIIAGYASNDEWLKAL 337 (875)
Q Consensus 292 li~~~~~~g~~~~A~~~~~~~~~----~-------~~~~~~~li~~~~~~g~~~~a~ 337 (875)
|.-.|++- +.++-.+.++.... | ....|.-++-.|++-.+++.|.
T Consensus 269 LaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 269 LAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 77777776 34444444443322 1 3345667776676666666553
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.05 E-value=0.0036 Score=62.76 Aligned_cols=156 Identities=10% Similarity=0.030 Sum_probs=101.6
Q ss_pred HHHHHHhccCCCCChhhHHHHHHHHH--HcCC---hHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhh---cC-----cH
Q 002834 642 FSASKIFQCHPQKDVVMLTAMIGGYA--MHGM---GKAALKVFSDMLELGVNPDH-VVITAVLSACSH---AG-----LV 707 (875)
Q Consensus 642 ~~A~~~~~~~~~~~~~~~~~li~~~~--~~g~---~~~A~~~~~~m~~~g~~p~~-~~~~~ll~a~~~---~g-----~~ 707 (875)
.++....... ..+..+|...+.+.. ..++ ..+|+.+|++.++ ..|+. ..+..+..++.. .+ ..
T Consensus 181 ~e~~r~~~~~-p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~ 257 (372)
T 3ly7_A 181 RMQETLQKIL-PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQL 257 (372)
T ss_dssp HHHHHHHHHS-CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHhccC-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhH
Confidence 3334444433 347778888776654 3333 4789999999999 57774 344444444431 11 11
Q ss_pred HHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 002834 708 DEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP-VEADCNVWGTLLGACRIHHEVELGRVVANRLF 786 (875)
Q Consensus 708 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 786 (875)
......++........+.+..+|..+.-.+...|++++|...++++. ..|+...|..+...+...|+.+.|.+.+++++
T Consensus 258 ~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~Al 337 (372)
T 3ly7_A 258 AALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAF 337 (372)
T ss_dssp HHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 11112222211111224456688888777777899999999999986 66887777777777888999999999999999
Q ss_pred cccCCCCccHHHHHH
Q 002834 787 EMEADNIGNYVVMSN 801 (875)
Q Consensus 787 ~~~p~~~~~~~~l~~ 801 (875)
.++|..+ .|....+
T Consensus 338 rL~P~~~-t~~~~~~ 351 (372)
T 3ly7_A 338 NLRPGAN-TLYWIEN 351 (372)
T ss_dssp HHSCSHH-HHHHHHH
T ss_pred hcCCCcC-hHHHHhC
Confidence 9999876 3444333
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.99 E-value=0.0021 Score=51.62 Aligned_cols=64 Identities=14% Similarity=0.107 Sum_probs=47.0
Q ss_pred HHHHhhcCCChHHHHHHHHhCC-CCC-CHH-HHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccH
Q 002834 733 LVDLLARGGQISDAYSLVNRMP-VEA-DCN-VWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNY 796 (875)
Q Consensus 733 l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 796 (875)
.+..+.+.|++++|++.++++. ..| +.. .|..+..++...|+++.|+..++++++++|+++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 4455666777777777777663 344 446 777777778888888888888888888888887765
No 216
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.96 E-value=0.016 Score=55.56 Aligned_cols=87 Identities=11% Similarity=0.076 Sum_probs=69.0
Q ss_pred hHHHHHHHHhCC-CCCC---HHHHHHHHHHHHh-----cCChhHHHHHHHHHhcccCCC-CccHHHHHHHHHhc-CCchh
Q 002834 743 ISDAYSLVNRMP-VEAD---CNVWGTLLGACRI-----HHEVELGRVVANRLFEMEADN-IGNYVVMSNLYAAD-ARWDG 811 (875)
Q Consensus 743 ~~~A~~~~~~~~-~~p~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 811 (875)
..+|...+++.. ..|+ ...|..|...|.. .|+.++|++.+++++++.|+. +.+++.++..|+.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 466777777664 6777 3577778777777 499999999999999999975 99999999999885 99999
Q ss_pred HHHHHHHHHhCCCcCCCc
Q 002834 812 VVEIRKLMKTRDLKKPAA 829 (875)
Q Consensus 812 A~~~~~~~~~~~~~~~~~ 829 (875)
|.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999888776654443344
No 217
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.92 E-value=0.0025 Score=54.57 Aligned_cols=90 Identities=13% Similarity=-0.045 Sum_probs=62.3
Q ss_pred CcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCC---ChHHHHHHHHhCC-CC-C--CHHHHHHHHHHHHhcCChhH
Q 002834 705 GLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGG---QISDAYSLVNRMP-VE-A--DCNVWGTLLGACRIHHEVEL 777 (875)
Q Consensus 705 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~-p--~~~~~~~l~~~~~~~~~~~~ 777 (875)
+....+.+.|.+..+ .-.++..+...+..++.+.+ +.++++.++++.. .. | +...+-.|.-+|.+.|++++
T Consensus 12 ~~l~~~~~~y~~e~~--~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKA--AGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHH--TTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHc--cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 355666666666654 22366777777788888877 5568888777763 23 4 24666677777788888888
Q ss_pred HHHHHHHHhcccCCCCccH
Q 002834 778 GRVVANRLFEMEADNIGNY 796 (875)
Q Consensus 778 a~~~~~~~~~~~p~~~~~~ 796 (875)
|.+.++++++.+|+|..+.
T Consensus 90 A~~y~~~lL~ieP~n~QA~ 108 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQAK 108 (152)
T ss_dssp HHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHhcCCCCHHHH
Confidence 8888888888888765543
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.90 E-value=0.0033 Score=66.09 Aligned_cols=93 Identities=11% Similarity=0.019 Sum_probs=61.8
Q ss_pred hcCcHHHHHHHHHHhHHHhC--CCCC----hhHHHHHHHHhhcCCChHHHHHHHHhCC---------CCCCH-HHHHHHH
Q 002834 703 HAGLVDEGLEIFRSIEKVQG--IKPT----PEQYASLVDLLARGGQISDAYSLVNRMP---------VEADC-NVWGTLL 766 (875)
Q Consensus 703 ~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~-~~~~~l~ 766 (875)
..|++++|..++++..+... +.|+ ..+++.|+.+|...|++++|+.++++.. ..|+. .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 34667777777776655321 2222 2367777777777777777777776651 34443 5577888
Q ss_pred HHHHhcCChhHHHHHHHHHhcc-----cCCCCcc
Q 002834 767 GACRIHHEVELGRVVANRLFEM-----EADNIGN 795 (875)
Q Consensus 767 ~~~~~~~~~~~a~~~~~~~~~~-----~p~~~~~ 795 (875)
..|..+|++++|+..+++++++ .|++|.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 8888888888888888888774 5666544
No 219
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.86 E-value=0.0038 Score=50.21 Aligned_cols=64 Identities=13% Similarity=0.088 Sum_probs=42.4
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHH
Q 002834 655 DVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEK 719 (875)
Q Consensus 655 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 719 (875)
+...|..+...|...|++++|+..|++..+.. +.+...|..+..++...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44566667777777777777777777777642 22344566666677777777777777776655
No 220
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.80 E-value=0.0017 Score=52.18 Aligned_cols=58 Identities=12% Similarity=0.154 Sum_probs=52.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHhcccCCCCc-cHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 002834 765 LLGACRIHHEVELGRVVANRLFEMEADNIG-NYVVMSNLYAADARWDGVVEIRKLMKTR 822 (875)
Q Consensus 765 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 822 (875)
....+...|+++.|+..++++++.+|+++. .+..+|.+|...|++++|++.++...+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 445677889999999999999999999999 9999999999999999999988877653
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.66 E-value=0.0063 Score=64.09 Aligned_cols=98 Identities=7% Similarity=-0.114 Sum_probs=54.6
Q ss_pred HhhcCcHHHHHHHHHHhHHHhC--CCCC----hhHHHHHHHHhhcCCChHHHHHHHHhCC---------CCCCH-HHHHH
Q 002834 701 CSHAGLVDEGLEIFRSIEKVQG--IKPT----PEQYASLVDLLARGGQISDAYSLVNRMP---------VEADC-NVWGT 764 (875)
Q Consensus 701 ~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~-~~~~~ 764 (875)
+...|++++|..++++..+... +.|+ ..+++.++.+|...|++++|+.++++.. ..|+. ..++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 3445555566555555543211 1122 2355556666666666666666655541 23332 45666
Q ss_pred HHHHHHhcCChhHHHHHHHHHhcc-----cCCCCccHHH
Q 002834 765 LLGACRIHHEVELGRVVANRLFEM-----EADNIGNYVV 798 (875)
Q Consensus 765 l~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~~~~~~ 798 (875)
|...|..+|++++|+..+++++++ .|++|.+-.+
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 777777777777777777777663 5766654433
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.38 E-value=0.012 Score=50.43 Aligned_cols=86 Identities=12% Similarity=-0.019 Sum_probs=61.0
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcC---cHHHHHHHHHHhHHHhCCCC--ChhHHHHHHHHhhcCCChHH
Q 002834 671 MGKAALKVFSDMLELGVNPDHVVITAVLSACSHAG---LVDEGLEIFRSIEKVQGIKP--TPEQYASLVDLLARGGQISD 745 (875)
Q Consensus 671 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~ 745 (875)
....+.+-|.+..+.|. ++..+...+..++++.+ ++++|+.+|++..+. . .| ....+..+.-++.+.|++++
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHH
Confidence 34556666777666654 66666666677777777 677888888888773 1 35 24567777788888999999
Q ss_pred HHHHHHhCC-CCCCH
Q 002834 746 AYSLVNRMP-VEADC 759 (875)
Q Consensus 746 A~~~~~~~~-~~p~~ 759 (875)
|.++++.+. .+|+.
T Consensus 90 A~~y~~~lL~ieP~n 104 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhcCCCC
Confidence 998888874 56654
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.25 E-value=0.014 Score=47.21 Aligned_cols=69 Identities=9% Similarity=0.065 Sum_probs=47.3
Q ss_pred HHHHHhhcCCChHHHHHHHHhCC---------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHH
Q 002834 732 SLVDLLARGGQISDAYSLVNRMP---------VEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMS 800 (875)
Q Consensus 732 ~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 800 (875)
.|+..+.+.|+++.|..+++.+. ..+...++..|..++.+.|+++.|...++++++++|+++.+...+.
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 34444455555555555544431 1234567888888999999999999999999999999877654443
No 224
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.93 E-value=0.45 Score=38.98 Aligned_cols=141 Identities=7% Similarity=0.030 Sum_probs=97.1
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHH
Q 002834 666 YAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISD 745 (875)
Q Consensus 666 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 745 (875)
+...|..++..++..+.... .+..-++-++.-....-+-+-..+.++.+-+-+.+.+- ...-.++.+|.+.|...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C-~NlKrVi~C~~~~n~~s- 91 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKC-QNLKSVVECGVINNTLN- 91 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGC-SCTHHHHHHHHHTTCCC-
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhh-hcHHHHHHHHHHhcchH-
Confidence 44578888999999888763 34444555665555555666667777666543333221 12334555565555433
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhCCCc
Q 002834 746 AYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTRDLK 825 (875)
Q Consensus 746 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 825 (875)
.....-+.....+|.-++-.+++..++..+|-+|...+.++++|.+.|+..+|.+++++.=++|++
T Consensus 92 --------------e~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 92 --------------EHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp --------------HHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred --------------HHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 233444566678888899888998887778888999999999999999999999999998888875
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.91 E-value=0.043 Score=42.98 Aligned_cols=70 Identities=13% Similarity=0.014 Sum_probs=53.1
Q ss_pred CCChhHHHHHHHHhhcCCC---hHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCC
Q 002834 724 KPTPEQYASLVDLLARGGQ---ISDAYSLVNRMP-VEAD-CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNI 793 (875)
Q Consensus 724 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 793 (875)
+++...+..++.++...+. .++|..++++.. ..|+ +..+..+...+...|+++.|+..++++++.+|.++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 3456677777777764444 688888888874 5664 46677777778889999999999999999999843
No 226
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.67 E-value=2.9 Score=45.82 Aligned_cols=113 Identities=12% Similarity=0.083 Sum_probs=66.5
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhH----HHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHHH
Q 002834 671 MGKAALKVFSDMLELGVNPDHVVI----TAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISDA 746 (875)
Q Consensus 671 ~~~~A~~~~~~m~~~g~~p~~~~~----~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 746 (875)
+.+.|...|....+.+ ..+.... ..+.......+...++...+..... ..++.......+....+.|+++.|
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cCCChHHHHHHHHHHHHCCCHHHH
Confidence 7788888888876543 2233222 2222233344435566666665433 223333334444445577899999
Q ss_pred HHHHHhCCCCC-CHHHHHHHH-HHHHhcCChhHHHHHHHHHhc
Q 002834 747 YSLVNRMPVEA-DCNVWGTLL-GACRIHHEVELGRVVANRLFE 787 (875)
Q Consensus 747 ~~~~~~~~~~p-~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~ 787 (875)
..+++.|+..+ +..-|..-+ .+....|+.+.|...++++.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999887443 223333333 345567888889888888875
No 227
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.67 E-value=0.15 Score=59.36 Aligned_cols=102 Identities=15% Similarity=0.140 Sum_probs=61.1
Q ss_pred HhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHH
Q 002834 634 LYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEI 713 (875)
Q Consensus 634 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~ 713 (875)
....+|++++|.++.+.+. +...|..+...+.+.|+++.|++.|.++.+ |..+...+...|+.+...++
T Consensus 661 ~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence 3456788888888776664 567788888888888888888888887643 22333344445565554444
Q ss_pred HHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhC
Q 002834 714 FRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRM 753 (875)
Q Consensus 714 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 753 (875)
-+.+.. .| .+..-..+|.+.|++++|++++.++
T Consensus 730 ~~~a~~-~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 730 AKDAET-TG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHH-TT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHH-cC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 433332 11 1222333455566666666666554
No 228
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.17 E-value=0.17 Score=58.97 Aligned_cols=98 Identities=12% Similarity=0.022 Sum_probs=60.8
Q ss_pred HhcCCHHHHHH-HhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHH
Q 002834 636 AKCGSIFSASK-IFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIF 714 (875)
Q Consensus 636 ~~~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~ 714 (875)
...+++++|.+ ++..+. +......++..+.+.|..++|+++.+.-. . -.......|++++|.++.
T Consensus 610 ~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~~~--------~----~f~~~l~~~~~~~A~~~~ 675 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPDQD--------Q----KFELALKVGQLTLARDLL 675 (814)
T ss_dssp HHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCCHH--------H----HHHHHHHHTCHHHHHHHH
T ss_pred HHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCCcc--------h----heehhhhcCCHHHHHHHH
Confidence 34677777777 554443 11223666677777777777776653211 1 122345567788887765
Q ss_pred HHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC
Q 002834 715 RSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP 754 (875)
Q Consensus 715 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 754 (875)
+.+ .+...|..+++.+.+.|+++.|.+.|.++.
T Consensus 676 ~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 676 TDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp TTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred Hhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 333 345677888888888888888888887763
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.17 E-value=0.26 Score=40.45 Aligned_cols=91 Identities=14% Similarity=-0.026 Sum_probs=62.1
Q ss_pred cHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCChHH---HHHHHHhCC-CC-C--CHHHHHHHHHHHHhcCChhHH
Q 002834 706 LVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQISD---AYSLVNRMP-VE-A--DCNVWGTLLGACRIHHEVELG 778 (875)
Q Consensus 706 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~-~~-p--~~~~~~~l~~~~~~~~~~~~a 778 (875)
....+.+-|.+... .+ .|+..+-..++.++.+.....+ ++.++++.- .. | .....-.|.-++.+.|+++.|
T Consensus 16 ~l~~~~~~y~~e~~-~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKA-AG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHH-HS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhc-cC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 34444555554444 22 2666666677778888776655 777777764 22 3 124455666778899999999
Q ss_pred HHHHHHHhcccCCCCccHHH
Q 002834 779 RVVANRLFEMEADNIGNYVV 798 (875)
Q Consensus 779 ~~~~~~~~~~~p~~~~~~~~ 798 (875)
.+..+.+++.+|+|..+..+
T Consensus 94 ~~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHH
Confidence 99999999999988765443
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.96 E-value=0.055 Score=51.85 Aligned_cols=111 Identities=13% Similarity=0.095 Sum_probs=65.6
Q ss_pred cCCHHHHHHHhccCCCCCh--hhHHHHHHH-HHHc--CC------hHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHhh
Q 002834 638 CGSIFSASKIFQCHPQKDV--VMLTAMIGG-YAMH--GM------GKAALKVFSDMLELGVNPD---HVVITAVLSACSH 703 (875)
Q Consensus 638 ~g~~~~A~~~~~~~~~~~~--~~~~~li~~-~~~~--g~------~~~A~~~~~~m~~~g~~p~---~~~~~~ll~a~~~ 703 (875)
.++..+-.+.+.+....++ ..|..++.+ ++.. |. ...|...+++.++ +.|+ ...|..+...|.+
T Consensus 134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHh
Confidence 3444444444555544333 356665543 3332 22 3566666777766 4666 3456666666666
Q ss_pred -----cCcHHHHHHHHHHhHHHhCCCCC--hhHHHHHHHHhhcC-CChHHHHHHHHhC
Q 002834 704 -----AGLVDEGLEIFRSIEKVQGIKPT--PEQYASLVDLLARG-GQISDAYSLVNRM 753 (875)
Q Consensus 704 -----~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~-g~~~~A~~~~~~~ 753 (875)
-|+.++|.++|++..+ +.|+ ..++..+.+.|++. |+.++|.+.+++.
T Consensus 212 vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3788888888877766 5563 55666677777663 6677766666665
No 231
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.83 E-value=0.41 Score=40.01 Aligned_cols=72 Identities=14% Similarity=0.080 Sum_probs=45.6
Q ss_pred CCChhHHHHHHHHhhcCCChH---HHHHHHHhCC-CCC-CH-HHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCcc
Q 002834 724 KPTPEQYASLVDLLARGGQIS---DAYSLVNRMP-VEA-DC-NVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGN 795 (875)
Q Consensus 724 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~-~~p-~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 795 (875)
.|+..+--.+..++.+....+ +++.++++.- ..| +. ...-.|.-++.+.|+++.|.+..+.+++.+|+|..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 456666666677777766543 4666666652 233 22 444455566777788888888888888888876543
No 232
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.61 E-value=0.08 Score=59.02 Aligned_cols=54 Identities=13% Similarity=0.088 Sum_probs=50.1
Q ss_pred HHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHH
Q 002834 766 LGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLM 819 (875)
Q Consensus 766 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 819 (875)
...|...|+++.|.++++++...-|.+-.+|..|+.+|...|+|+.|+-.++.+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 455777899999999999999999999999999999999999999999988876
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.60 E-value=0.11 Score=42.74 Aligned_cols=90 Identities=7% Similarity=-0.018 Sum_probs=70.1
Q ss_pred CCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHhccc-C-CCCccHHHHHHHHHhcCCchhHHHHHHHHHhCCCcCCCce
Q 002834 756 EADCNVWGTLLGACRIHHEV---ELGRVVANRLFEME-A-DNIGNYVVMSNLYAADARWDGVVEIRKLMKTRDLKKPAAC 830 (875)
Q Consensus 756 ~p~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 830 (875)
.|+..+-..+.+++...++. .+++.+++.++..+ | ..-...+.||-.+++.|++++|.+..+.+.+.
T Consensus 32 ~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~-------- 103 (126)
T 1nzn_A 32 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT-------- 103 (126)
T ss_dssp CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--------
Confidence 47778888888888877655 45999999999887 5 34557788999999999999999988887652
Q ss_pred eEEEeCCEEeEEecCCCCCCChHHHHHHHHHHHHHHHhcCC
Q 002834 831 SWIEVERKNNAFMAGDYSHPRRDMIYWVLSILDEQIKDQVT 871 (875)
Q Consensus 831 s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 871 (875)
+|...+.....+.+..+|.++|+
T Consensus 104 ------------------eP~n~QA~~Lk~~i~~~i~kdGl 126 (126)
T 1nzn_A 104 ------------------EPQNNQAKELERLIDKAMKKDGL 126 (126)
T ss_dssp ------------------CTTCHHHHHHHHHHHHHHHHC--
T ss_pred ------------------CCCCHHHHHHHHHHHHHHHhccC
Confidence 46667777777777888888884
No 234
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.08 E-value=0.11 Score=41.72 Aligned_cols=64 Identities=8% Similarity=-0.040 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccC-------CCCccHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 758 DCNVWGTLLGACRIHHEVELGRVVANRLFEMEA-------DNIGNYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 758 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
++.-...++..+...|+++.|+..++++++..+ ..+.++..|+.+|.+.|++++|+...+....
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 344566788889999999999999999998642 2345788999999999999999998877654
No 235
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.94 E-value=0.99 Score=39.68 Aligned_cols=105 Identities=10% Similarity=0.029 Sum_probs=68.8
Q ss_pred HHHhcCCChhHHHHHHHhcCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchhhHHH
Q 002834 397 SFYAKCSDMEAAYRTFLMICRRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKE 476 (875)
Q Consensus 397 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 476 (875)
.....+|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+ +..+.-.+.-.|+.+...+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3345677888888777765 4566788888888888888888888877643 3334344444566666665
Q ss_pred HHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 002834 477 THGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLE 521 (875)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 521 (875)
+-+.....|- ++.....+.-.|+++++.++|.+...
T Consensus 82 la~iA~~~g~---------~n~af~~~l~lGdv~~~i~lL~~~~r 117 (177)
T 3mkq_B 82 MQNIAQTRED---------FGSMLLNTFYNNSTKERSSIFAEGGS 117 (177)
T ss_dssp HHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred HHHHHHHCcc---------HHHHHHHHHHcCCHHHHHHHHHHCCC
Confidence 5555555543 24445556677888888877766544
No 236
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.89 E-value=11 Score=42.96 Aligned_cols=297 Identities=10% Similarity=0.032 Sum_probs=154.6
Q ss_pred HHHHHHHHHhcCCChhHH-HHHHH-hcCC-CCcchHHH-HHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHH--
Q 002834 391 VGNALVSFYAKCSDMEAA-YRTFL-MICR-RDLISWNS-MLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHF-- 464 (875)
Q Consensus 391 ~~~~li~~~~~~g~~~~A-~~~~~-~~~~-~~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~-- 464 (875)
...++.+++..+|--.+. ++... -+.+ .+-.-+.+ .--+....|+.++++.+++..+..+-..+..+-...+-+
T Consensus 341 ~A~~f~Naf~naG~~~D~~l~~~~~Wl~k~~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLG 420 (963)
T 4ady_A 341 TAVSVANGFMHAGTTDNSFIKANLPWLGKAQNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLG 420 (963)
T ss_dssp HHHHHHHHHHTTTTCCCHHHHHCHHHHHHCCTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcchhhhcchhhhhccchHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHH
Confidence 445677777777754332 11111 0111 11111222 233566778888888877765542212233333333332
Q ss_pred hhccCchhhHHHHHHHHHHhcC-CCCC---CchhHHHHHHHHHHhcCC-HHHHHHHHHhhccCCCccc--HH--HHHHHh
Q 002834 465 CTTVLREGMVKETHGYLIKTGL-LLGD---TEHNIGNAILDAYAKCRN-IKYAFNVFQSLLEKRNLVT--FN--PVISGY 535 (875)
Q Consensus 465 ~~~~~~~~~a~~~~~~~~~~~~-~~~~---~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~p~~~~--~~--~l~~~~ 535 (875)
....|....+..++...+...- .... +...+..++.-++.-.|. -+++.+.+..+....+..+ .. ++...+
T Consensus 421 li~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~ 500 (963)
T 4ady_A 421 LIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCM 500 (963)
T ss_dssp HHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhh
Confidence 2334443445565555444321 0000 112223334334433443 2455666655554423221 11 233345
Q ss_pred hcCCChHHHHHHHHhhhcCCCcc---HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCc-chHh---cHHHHhhcccchH
Q 002834 536 ANCGSADEAFMTFSRIYARDLTP---WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDA-VTIM---SLLPVCSQMASVH 608 (875)
Q Consensus 536 ~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~---~ll~a~~~~~~~~ 608 (875)
.-.|+.+....++..+.+..... ...+.-++...|+.+.+-.+++.+... .++ .-|. .+.-+|+..|+..
T Consensus 501 vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~ 577 (963)
T 4ady_A 501 LGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNS 577 (963)
T ss_dssp TTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHH
T ss_pred cccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHH
Confidence 67788888888887765543333 344445556788999888888888763 232 2233 3344788889988
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC-CChhhHH--HHHHHHHHcCCh-HHHHHHHHHHHH
Q 002834 609 LLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ-KDVVMLT--AMIGGYAMHGMG-KAALKVFSDMLE 684 (875)
Q Consensus 609 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~--~li~~~~~~g~~-~~A~~~~~~m~~ 684 (875)
...+++..+.....++..-...+.-+....|+.+.+.++++.+.+ .|..+-. .+.-+....|.. .+++.++..+..
T Consensus 578 aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 578 AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 888888888765433444333333344446666667777765443 3443333 334444445554 678889999875
Q ss_pred CCCCCChhh
Q 002834 685 LGVNPDHVV 693 (875)
Q Consensus 685 ~g~~p~~~~ 693 (875)
.+|..+
T Consensus 658 ---D~d~~V 663 (963)
T 4ady_A 658 ---DPVDFV 663 (963)
T ss_dssp ---CSSHHH
T ss_pred ---CCCHHH
Confidence 455444
No 237
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.52 E-value=3.6 Score=36.13 Aligned_cols=128 Identities=9% Similarity=0.026 Sum_probs=70.0
Q ss_pred HhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHH
Q 002834 634 LYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEI 713 (875)
Q Consensus 634 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~ 713 (875)
....+|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+ |..+.-.|.-.|+.+.-.++
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 345567777777766654 3566777777777777777777777776532 22233334445565554444
Q ss_pred HHHhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 002834 714 FRSIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHHEVELGRVVANRL 785 (875)
Q Consensus 714 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 785 (875)
-+.... .| -++.-..++.-.|+++++.+++.+...-|... -....+|-.+.|.++.+++
T Consensus 83 a~iA~~-~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 83 QNIAQT-RE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHH-TT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHH-Cc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 333322 11 12233334445577777777776664333211 1123466667777766554
No 238
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.97 E-value=0.35 Score=39.82 Aligned_cols=73 Identities=14% Similarity=0.066 Sum_probs=41.7
Q ss_pred CCCChhHHHHHHHHhhcCCCh---HHHHHHHHhCC-CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCcc
Q 002834 723 IKPTPEQYASLVDLLARGGQI---SDAYSLVNRMP-VEAD--CNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGN 795 (875)
Q Consensus 723 ~~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~-~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 795 (875)
-.|+..+--.++.++.+.... .+++.++++.- ..|. ...+-.|.-++.+.|+++.|.+..+.+++.+|+|..+
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 345555555556666665544 34555555542 2331 2445555566667777777777777777777765443
No 239
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.34 E-value=19 Score=41.21 Aligned_cols=156 Identities=12% Similarity=0.036 Sum_probs=75.7
Q ss_pred hcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC-CChh-hHH---HHHHHHHHcCChHHHH
Q 002834 602 SQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ-KDVV-MLT---AMIGGYAMHGMGKAAL 676 (875)
Q Consensus 602 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~-~~~---~li~~~~~~g~~~~A~ 676 (875)
...|+.+....+...+.....++..-..++.-++.-.|+.+.+..+++.+.. .+.. -|. ++.-+|+..|+.....
T Consensus 501 vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq 580 (963)
T 4ady_A 501 LGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVK 580 (963)
T ss_dssp TTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHH
T ss_pred cccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 3445666666666665543211222222222223344555555555444332 2322 222 2334556667766666
Q ss_pred HHHHHHHHCCCCCChhhHHHHHH-HHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHHHhhcCCCh-HHHHHHHHhCC
Q 002834 677 KVFSDMLELGVNPDHVVITAVLS-ACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVDLLARGGQI-SDAYSLVNRMP 754 (875)
Q Consensus 677 ~~~~~m~~~g~~p~~~~~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 754 (875)
.++..+.+.. ..+ +.-..++. ++...|+.+.+.++++.+.+ ...|....-..+.-+....|.. .+|++.+..+.
T Consensus 581 ~LL~~~~~d~-~d~-VRraAViaLGlI~~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 581 RLLHVAVSDS-NDD-VRRAAVIALGFVLLRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HHHHHHHHCS-CHH-HHHHHHHHHHHHTSSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHhccCC-cHH-HHHHHHHHHHhhccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 6777777631 222 22223333 44455665556666654443 2345444444444444444443 57777777776
Q ss_pred CCCCHHH
Q 002834 755 VEADCNV 761 (875)
Q Consensus 755 ~~p~~~~ 761 (875)
.++|..+
T Consensus 657 ~D~d~~V 663 (963)
T 4ady_A 657 KDPVDFV 663 (963)
T ss_dssp TCSSHHH
T ss_pred cCCCHHH
Confidence 6666544
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.00 E-value=0.28 Score=41.31 Aligned_cols=105 Identities=10% Similarity=0.003 Sum_probs=66.4
Q ss_pred CCChhhHHHHHHHHhhcCcH------HHHHHHHHHhHHHhCCCCChh-HHHHHHH------HhhcCCChHHHHHHHHhCC
Q 002834 688 NPDHVVITAVLSACSHAGLV------DEGLEIFRSIEKVQGIKPTPE-QYASLVD------LLARGGQISDAYSLVNRMP 754 (875)
Q Consensus 688 ~p~~~~~~~ll~a~~~~g~~------~~a~~~~~~~~~~~~~~p~~~-~~~~l~~------~~~~~g~~~~A~~~~~~~~ 754 (875)
+-|..+|...+...-+.|+. ++.+++|+++.. .++|+.. .|...+. .+...++.++|.++|+.+.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34566777777777777888 888888888776 4667521 2211111 1122367777777776662
Q ss_pred --CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCc
Q 002834 755 --VEADCNVWGTLLGACRIHHEVELGRVVANRLFEMEADNIG 794 (875)
Q Consensus 755 --~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 794 (875)
.+.=+.+|......-.++||+..|.+++.+++.+.|.+..
T Consensus 88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 1112667777777777777777777777777777776543
No 241
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.99 E-value=1.1 Score=38.68 Aligned_cols=59 Identities=14% Similarity=0.116 Sum_probs=37.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHC-CCCCCh-------hhHHHHHHHHhhcCcHHHHHHHHHHhHHH
Q 002834 662 MIGGYAMHGMGKAALKVFSDMLEL-GVNPDH-------VVITAVLSACSHAGLVDEGLEIFRSIEKV 720 (875)
Q Consensus 662 li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~-------~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 720 (875)
-+..+...|.++.|+-+.+.+... +..|+. .++..+..++...|.+..|...|++..+.
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 355566677777777776665432 123332 24555666788888888888888886554
No 242
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.89 E-value=0.57 Score=39.47 Aligned_cols=97 Identities=10% Similarity=0.109 Sum_probs=53.0
Q ss_pred CChhhHHHHHHHHHHcCCh------HHHHHHHHHHHHCCCCCChh----hHHHHHHH---HhhcCcHHHHHHHHHHhHHH
Q 002834 654 KDVVMLTAMIGGYAMHGMG------KAALKVFSDMLELGVNPDHV----VITAVLSA---CSHAGLVDEGLEIFRSIEKV 720 (875)
Q Consensus 654 ~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~~----~~~~ll~a---~~~~g~~~~a~~~~~~~~~~ 720 (875)
.|..+|-..+...-+.|++ ++..++|++.... ++|+.. .|..+.-- +...+++++|.++|+.+...
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4556666666666666666 6666666666664 555432 12222221 12245666666666666553
Q ss_pred hCCCCChhHHHHHHHHhhcCCChHHHHHHHHhC
Q 002834 721 QGIKPTPEQYASLVDLLARGGQISDAYSLVNRM 753 (875)
Q Consensus 721 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 753 (875)
.-+. ...|.....--.|+|++..|.+++...
T Consensus 90 -hKkF-AKiwi~~AqFEiRqgnl~kARkILg~A 120 (161)
T 4h7y_A 90 -CKKF-AFVHISFAQFELSQGNVKKSKQLLQKA 120 (161)
T ss_dssp -CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 2222 345555555556666666666666554
No 243
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=91.86 E-value=10 Score=37.10 Aligned_cols=165 Identities=8% Similarity=0.092 Sum_probs=92.5
Q ss_pred HHHHHhhcCCChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCchHHHH----HHHHHHHCCCCCCcchHhcHHHHhhccc
Q 002834 530 PVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALS----LFLKLQAQGMKPDAVTIMSLLPVCSQMA 605 (875)
Q Consensus 530 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~----~~~~m~~~g~~p~~~~~~~ll~a~~~~~ 605 (875)
++..-|.+.+++++|.+++..- ...+.+.|+...|.+ +++-..+.++.++......++..+....
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p 106 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELD 106 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 3444466677777777765432 222345566555444 3444455667777666555555544422
Q ss_pred -----chHHHHHHHHHHHHhcC-C--CchHHHHHHHHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHc---CChHH
Q 002834 606 -----SVHLLRQCHGYVIRACF-D--GVRLNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMH---GMGKA 674 (875)
Q Consensus 606 -----~~~~a~~~~~~~~~~~~-~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~ 674 (875)
+.+-.........+.|. + ++.+...+...|.+.|++.+|+..|-.....+...+..++.-+... |...+
T Consensus 107 ~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e 186 (312)
T 2wpv_A 107 PSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDST 186 (312)
T ss_dssp TTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred CCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcch
Confidence 22333334444444433 3 8899999999999999999999988643322344444444333322 22222
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHH
Q 002834 675 ALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKV 720 (875)
Q Consensus 675 A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 720 (875)
+ +...-..++. |...|+...|..+|+...+.
T Consensus 187 ~--------------dlf~~RaVL~-yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 187 V--------------AEFFSRLVFN-YLFISNISFAHESKDIFLER 217 (312)
T ss_dssp H--------------HHHHHHHHHH-HHHTTBHHHHHHHHHHHHHH
T ss_pred H--------------HHHHHHHHHH-HHHhcCHHHHHHHHHHHHHH
Confidence 1 1111222333 45677899999998877653
No 244
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=90.65 E-value=1.7 Score=41.08 Aligned_cols=121 Identities=14% Similarity=0.083 Sum_probs=75.1
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChh----HHHHHHHHhhcC
Q 002834 665 GYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPE----QYASLVDLLARG 740 (875)
Q Consensus 665 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~ 740 (875)
.+.+.|+.++|++....-++.. +-|...-..++..+|-.|+++.|.+-++.+.+ +.|+.. .|..++.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~---l~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHH----
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhhHHHHHHHHHHHH----
Confidence 4556788888888888777752 44555556677788888999999988887766 566643 33333332
Q ss_pred CChHHHHHHHHh--CC-CCCCHHHHHHHH-HHH--HhcCChhHHHHHHHHHhcccCCCCcc
Q 002834 741 GQISDAYSLVNR--MP-VEADCNVWGTLL-GAC--RIHHEVELGRVVANRLFEMEADNIGN 795 (875)
Q Consensus 741 g~~~~A~~~~~~--~~-~~p~~~~~~~l~-~~~--~~~~~~~~a~~~~~~~~~~~p~~~~~ 795 (875)
....+ ++|.. .| +.-.+..|..++ .+. ...|+.+.|.+.-.++++.-|..++.
T Consensus 78 E~~R~--~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~ 136 (273)
T 1zbp_A 78 AQARK--DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 136 (273)
T ss_dssp HHHHH--HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHHH--HHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCC
Confidence 11111 12211 12 111233455444 333 35689999999999999988877664
No 245
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.26 E-value=2.1 Score=35.78 Aligned_cols=69 Identities=16% Similarity=-0.040 Sum_probs=43.1
Q ss_pred CCChhhHHHHHHHHhhcC---cHHHHHHHHHHhHHHhCCCC--ChhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCCH
Q 002834 688 NPDHVVITAVLSACSHAG---LVDEGLEIFRSIEKVQGIKP--TPEQYASLVDLLARGGQISDAYSLVNRMP-VEADC 759 (875)
Q Consensus 688 ~p~~~~~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~ 759 (875)
.|+..+-..+..++.+.. +..+++.++++..+. .| .......|.-++.+.|++++|.++++.+. .+|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~---~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH---CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 455555444455555544 445677777777662 33 23456667777788888888888877764 56654
No 246
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.81 E-value=21 Score=37.29 Aligned_cols=96 Identities=11% Similarity=0.048 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-----hhhHHHHHHHHhhcCcHHHHHHHHHHhHHH-hCCCC--C--h
Q 002834 658 MLTAMIGGYAMHGMGKAALKVFSDMLELGVNPD-----HVVITAVLSACSHAGLVDEGLEIFRSIEKV-QGIKP--T--P 727 (875)
Q Consensus 658 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~p--~--~ 727 (875)
....|...|-..|++.+|..++.++...-...+ ...+...++.|...+++..|..+++++... ....+ + .
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 345677888899999999999998864312222 234566677899999999999999987532 22222 2 2
Q ss_pred hHHHHHHHHhhcCCChHHHHHHHHhC
Q 002834 728 EQYASLVDLLARGGQISDAYSLVNRM 753 (875)
Q Consensus 728 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 753 (875)
..|.+++..+...+++.+|.+.|.++
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 36788889999999999998877665
No 247
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.35 E-value=1.1 Score=36.83 Aligned_cols=76 Identities=17% Similarity=-0.002 Sum_probs=49.7
Q ss_pred CCCChhhHHHHHHHHhhcC---cHHHHHHHHHHhHHHhCCCCC--hhHHHHHHHHhhcCCChHHHHHHHHhCC-CCCCHH
Q 002834 687 VNPDHVVITAVLSACSHAG---LVDEGLEIFRSIEKVQGIKPT--PEQYASLVDLLARGGQISDAYSLVNRMP-VEADCN 760 (875)
Q Consensus 687 ~~p~~~~~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~ 760 (875)
-.|+..|-..+..++.+.. +..+++.++++..+. .|. .+.+..|.-++.+.|++++|.++++.+. .+|+..
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~---~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 3455555444555555554 455788888888762 252 4467777888888999999998888874 677654
Q ss_pred HHHHH
Q 002834 761 VWGTL 765 (875)
Q Consensus 761 ~~~~l 765 (875)
--.+|
T Consensus 113 QA~~L 117 (134)
T 3o48_A 113 QVGAL 117 (134)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 43333
No 248
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=88.27 E-value=21 Score=35.17 Aligned_cols=164 Identities=13% Similarity=0.106 Sum_probs=91.4
Q ss_pred HHHHHhhcCCChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCchHHHHH----HHHHHHCCCCCCcchHhcHHHHhhccc
Q 002834 530 PVISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSL----FLKLQAQGMKPDAVTIMSLLPVCSQMA 605 (875)
Q Consensus 530 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~----~~~m~~~g~~p~~~~~~~ll~a~~~~~ 605 (875)
++..-|.+.+++++|++++..- ...+.+.|+...|.++ ++-..+.++++|..+...++..+....
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~ 108 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQ 108 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 3444466677777777665332 1223455555444333 344455566677666555555554443
Q ss_pred c-----hHHHHHHHHHHHHhc--CC-CchHHHHHHHHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHH
Q 002834 606 S-----VHLLRQCHGYVIRAC--FD-GVRLNGALLHLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALK 677 (875)
Q Consensus 606 ~-----~~~a~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 677 (875)
. ..-..+....-.+.| .. ++.+...+...|.+.+++.+|+..|-....+.+..+..++.-+...+...
T Consensus 109 ~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~---- 184 (336)
T 3lpz_A 109 PGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH---- 184 (336)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG----
T ss_pred CCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc----
Confidence 2 122233333344444 33 89999999999999999999999986433333355544443333322211
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHH
Q 002834 678 VFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEK 719 (875)
Q Consensus 678 ~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 719 (875)
.++...-..++. |...+++..|..+++...+
T Consensus 185 ----------e~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 ----------TAPLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ----------GHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred ----------cHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 122222333333 5566788888887776654
No 249
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=86.34 E-value=26 Score=34.23 Aligned_cols=169 Identities=9% Similarity=0.004 Sum_probs=100.1
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHhcCCCCcchHHHHHHHHhccCChhHHHHH----HHHHHHCCCCCChhhHHHHHHHhh
Q 002834 391 VGNALVSFYAKCSDMEAAYRTFLMICRRDLISWNSMLDAFSESGYNSQFLNL----LNCMLMEGIRPDSITILTIIHFCT 466 (875)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~~m~~~g~~p~~~t~~~ll~~~~ 466 (875)
.+.++..=|.+.+++++|.+++.. -...+.+.|+...|-++ ++-..+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 667777778888899998888643 23345666776665554 555566788888888877777765
Q ss_pred ccCchh-hHHHHHHHHHH----hcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcccHHHHHHHhhcC---
Q 002834 467 TVLREG-MVKETHGYLIK----TGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANC--- 538 (875)
Q Consensus 467 ~~~~~~-~a~~~~~~~~~----~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~--- 538 (875)
.....+ .-.++...+++ .|- ....++.....+...|.+.|++.+|..-|-.-... +...+..++--+...
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~-~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~-s~~~~a~~l~~w~~~~~~ 181 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSE-YKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHD-SMIKYVDLLWDWLCQVDD 181 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSS-CTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHH-HHHHHHHHHHHHHHHTTC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCc-cHHHHHHHHHHHHHhcCC
Confidence 533221 23344444443 332 11356777888888899999999988877532211 344555554444333
Q ss_pred CChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCchHHHHHHHHHH
Q 002834 539 GSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQ 583 (875)
Q Consensus 539 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 583 (875)
|...++--.+ ...+-.|.-.++...|..+|+...
T Consensus 182 ~~~~e~dlf~-----------~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 182 IEDSTVAEFF-----------SRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp CCHHHHHHHH-----------HHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred CCcchHHHHH-----------HHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3333322111 112223456677777777776654
No 250
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=86.16 E-value=1.2 Score=38.33 Aligned_cols=122 Identities=12% Similarity=0.067 Sum_probs=59.1
Q ss_pred CCCCChh--hHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCCh-------hHHHHHHHHhhcCCChHHHHHHHHhCC--
Q 002834 686 GVNPDHV--VITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTP-------EQYASLVDLLARGGQISDAYSLVNRMP-- 754 (875)
Q Consensus 686 g~~p~~~--~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 754 (875)
|+.|... ++..-+..+...|.++.|.-+..-+....+..|+. .++..+++++...|.+..|...+++..
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 4555433 23334456666777777776666655433333431 245556666777777777666666531
Q ss_pred --CCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHH
Q 002834 755 --VEADC-NVWGTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLM 819 (875)
Q Consensus 755 --~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 819 (875)
.-+.. .....+ +. . ........+ +.+...-+.++.+|.+.|++++|+.+++.+
T Consensus 93 ~k~l~k~~s~~~~~-~~---~-------ss~p~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 93 KKALSKTSKVRPST-GN---S-------ASTPQSQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHCC-------------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHhcCCCccccc-cc---c-------CCCcccccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 00100 000000 00 0 000000111 223345567899999999999999998753
No 251
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=86.00 E-value=13 Score=30.61 Aligned_cols=83 Identities=13% Similarity=0.045 Sum_probs=49.5
Q ss_pred CCChhHHHHHHHhcCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHH
Q 002834 402 CSDMEAAYRTFLMICRRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYL 481 (875)
Q Consensus 402 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 481 (875)
+|++......+-.+. .+....+..+..+..+|+-++-.+++..+.. +.+|++.....+-.+|.+.|+...+.+++.++
T Consensus 74 C~NlKrVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A 151 (172)
T 1wy6_A 74 CQNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEA 151 (172)
T ss_dssp CSCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 344444444433322 2334456667778888888888888887544 34556666666666666666666666666666
Q ss_pred HHhcC
Q 002834 482 IKTGL 486 (875)
Q Consensus 482 ~~~~~ 486 (875)
-+.|+
T Consensus 152 C~kG~ 156 (172)
T 1wy6_A 152 CKKGE 156 (172)
T ss_dssp HHTTC
T ss_pred HHhhh
Confidence 66654
No 252
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=84.57 E-value=5.3 Score=44.60 Aligned_cols=52 Identities=15% Similarity=0.151 Sum_probs=41.7
Q ss_pred HHhhcCcHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHHHhCC
Q 002834 700 ACSHAGLVDEGLEIFRSIEKVQGIKPT-PEQYASLVDLLARGGQISDAYSLVNRMP 754 (875)
Q Consensus 700 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 754 (875)
-|...|+++.|+++-++... ..|+ -.+|..|+.+|...|+++.|+-.++.+|
T Consensus 346 FLl~K~~~elAL~~Ak~AV~---~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTE---LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhccCcHHHHHHHHHHHHh---cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 35567888888888888866 5665 4588888888888888888888888886
No 253
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=82.29 E-value=34 Score=34.76 Aligned_cols=160 Identities=9% Similarity=0.032 Sum_probs=88.5
Q ss_pred HHHHHHHhHhcCCHHHHHHHhccCCC--------CChhhHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCChhhHH---
Q 002834 628 NGALLHLYAKCGSIFSASKIFQCHPQ--------KDVVMLTAMIGGYAMHG-MGKAALKVFSDMLELGVNPDHVVIT--- 695 (875)
Q Consensus 628 ~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~--- 695 (875)
...|...|.+.|+.++..+++..... ........++..+.... ..+.-+++..+..+-. .-+..+|.
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr~~ 100 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 35667777888888877777776654 12234455666665432 3333444444443210 11122331
Q ss_pred ---HHHHHHhhcCcHHHHHHHHHHhHHHhCCCCC----hhHHHHHHHHhhcCCChHHHHHHHHhCC-----CCCCHHH--
Q 002834 696 ---AVLSACSHAGLVDEGLEIFRSIEKVQGIKPT----PEQYASLVDLLARGGQISDAYSLVNRMP-----VEADCNV-- 761 (875)
Q Consensus 696 ---~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~~-- 761 (875)
.+...|...|++.+|.+++.++.+...-..+ .+.|..-+..|...|++.++...+.+.. ..|++..
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 4566777788888888887777664322112 2345566677777788777777776552 1233322
Q ss_pred -HHHHHHH-HH-hcCChhHHHHHHHHHhcc
Q 002834 762 -WGTLLGA-CR-IHHEVELGRVVANRLFEM 788 (875)
Q Consensus 762 -~~~l~~~-~~-~~~~~~~a~~~~~~~~~~ 788 (875)
.....+. +. ..+++..|-..|-.+++.
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 2222222 33 467787777777666543
No 254
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=82.23 E-value=8.4 Score=39.56 Aligned_cols=74 Identities=18% Similarity=0.142 Sum_probs=59.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHH----HhCCCCChhHHHHH
Q 002834 659 LTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEK----VQGIKPTPEQYASL 733 (875)
Q Consensus 659 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~~~l 733 (875)
...++..+...|++.+|+..+..+... -+-+...+..++.++...|+..+|++.|+++.+ ..|+.|...+-...
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 445677788899999999999888875 355777889999999999999999999988754 36899987654433
No 255
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=80.49 E-value=8.7 Score=29.70 Aligned_cols=63 Identities=17% Similarity=0.301 Sum_probs=48.6
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHH
Q 002834 671 MGKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVD 735 (875)
Q Consensus 671 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 735 (875)
+.-+..+-++.+....+.|++....+.++||.+.+++..|.++|+.++.+ ..+....|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHH
Confidence 34456666777777788999999999999999999999999999888764 3333456666643
No 256
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=79.51 E-value=77 Score=34.63 Aligned_cols=379 Identities=9% Similarity=-0.079 Sum_probs=192.8
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHhcCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHCCCCCChhhHHHHHHHhhccCc
Q 002834 391 VGNALVSFYAKCSDMEAAYRTFLMICRRDLISWNSMLDAFSESGYNSQFLNLLNCMLMEGIRPDSITILTIIHFCTTVLR 470 (875)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 470 (875)
.-...+..+.+.+++.....++.. ...+...-.....+....|+..+|....+.+-..|- .....+..++..+...|.
T Consensus 74 Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g~ 151 (618)
T 1qsa_A 74 LQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGK 151 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCCC
Confidence 556666777778888888886666 434555555677788888988888887777766552 233344444444443332
Q ss_pred hhhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcccHHHHHHHhhcCCChHHHHHHHHh
Q 002834 471 EGMVKETHGYLIKTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSADEAFMTFSR 550 (875)
Q Consensus 471 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~ 550 (875)
.+....-.-+......|+...|..+...+... .......++..+.. ...+......
T Consensus 152 --------------------lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~-~~~~a~~~~al~~~---p~~~~~~~~~ 207 (618)
T 1qsa_A 152 --------------------QDPLAYLERIRLAMKAGNTGLVTVLAGQMPAD-YQTIASAIISLANN---PNTVLTFART 207 (618)
T ss_dssp --------------------SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGG-GHHHHHHHHHHHHC---GGGHHHHHHH
T ss_pred --------------------CCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHH-HHHHHHHHHHHHhC---hHhHHHHHhc
Confidence 22222233334555666666666666555211 11111222222211 1112221111
Q ss_pred hhcCCCcc---HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHh----cHHHHhhcccchHHHHHHHHHHHHhcCC
Q 002834 551 IYARDLTP---WNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIM----SLLPVCSQMASVHLLRQCHGYVIRACFD 623 (875)
Q Consensus 551 ~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~----~ll~a~~~~~~~~~a~~~~~~~~~~~~~ 623 (875)
. .++... +..-+.-+. ..+.+.|..+|....+.+ ..+..... .+.......+....+...+........
T Consensus 208 ~-~~~~~~~~~~~~~~~rla-r~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~- 283 (618)
T 1qsa_A 208 T-GATDFTRQMAAVAFASVA-RQDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ- 283 (618)
T ss_dssp S-CCCHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC-
T ss_pred c-CCChhhHHHHHHHHHHHH-hcCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCC-
Confidence 1 111110 111122223 337788888888876543 22222211 222223333423344444443333222
Q ss_pred CchHHHHHHHHhHhcCCHHHHHHHhccCCCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 002834 624 GVRLNGALLHLYAKCGSIFSASKIFQCHPQKD---VVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVITAVLSA 700 (875)
Q Consensus 624 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a 700 (875)
+.....-.+....+.|+.+.|...|..+.... ....-=+..++...|+.++|..+|.++.. + .+|..++.+
T Consensus 284 ~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~----~--~~fYg~lAa 357 (618)
T 1qsa_A 284 STSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ----Q--RGFYPMVAA 357 (618)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----S--CSHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc----C--CChHHHHHH
Confidence 33334444455567899999999999988632 22233355677888999999999999864 2 245444432
Q ss_pred HhhcCcHHHHHHHHHHhHHHhCCCCC-h-----hHHHHHHHHhhcCCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 002834 701 CSHAGLVDEGLEIFRSIEKVQGIKPT-P-----EQYASLVDLLARGGQISDAYSLVNRMPVEADCNVWGTLLGACRIHHE 774 (875)
Q Consensus 701 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 774 (875)
.+.|..-. . .. ....+. . ..-..-+..+.+.|...+|...+.......+......+.......|.
T Consensus 358 -~~Lg~~~~-~----~~---~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~ 428 (618)
T 1qsa_A 358 -QRIGEEYE-L----KI---DKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQW 428 (618)
T ss_dssp -HHTTCCCC-C----CC---CCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC
T ss_pred -HHcCCCCC-C----CC---CCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Confidence 22221100 0 00 001110 0 01122345677889999998777665433444444445455567788
Q ss_pred hhHHHHHHHHHhcccC---CCCccHHHHHHHHHhcCCchhHHH
Q 002834 775 VELGRVVANRLFEMEA---DNIGNYVVMSNLYAADARWDGVVE 814 (875)
Q Consensus 775 ~~~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~ 814 (875)
.+.++....+.-..+. ..|..|..+..-+++.-..+.++-
T Consensus 429 ~~~~v~~~~~~~~~~~~~~~~P~~y~~~i~~~a~~~gv~~~ll 471 (618)
T 1qsa_A 429 WDLSVQATIAGKLWDHLEERFPLAYNDLFKRYTSGKEIPQSYA 471 (618)
T ss_dssp HHHHHHHHHHTTCTTCHHHHSCCTTHHHHHHHHTTSSSCHHHH
T ss_pred hHHHHHHHHHHHhhcchhhhCCcchHHHHHHHHHHcCCCHHHH
Confidence 8888877665433221 123345555555555555555444
No 257
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=79.48 E-value=3.1 Score=42.80 Aligned_cols=58 Identities=9% Similarity=-0.108 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHH
Q 002834 763 GTLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMK 820 (875)
Q Consensus 763 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 820 (875)
..+..++...|+.+.+...+++++..+|-+...|..|..+|...|+..+|++.++..+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445556667777777777777777788777777777788888888888877665553
No 258
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=79.26 E-value=7.2 Score=30.15 Aligned_cols=48 Identities=8% Similarity=0.087 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHHHhc
Q 002834 438 QFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTG 485 (875)
Q Consensus 438 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 485 (875)
+..+-++.+....+-|+.......+++|.+.+++..|.++++-++...
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~ 75 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA 75 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 455556666667788888888888888888888888888888777543
No 259
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=78.82 E-value=53 Score=32.35 Aligned_cols=170 Identities=12% Similarity=0.041 Sum_probs=99.1
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHhcCCCCcchHHHHHHHHhccCChhHHHHHH----HHHHHCCCCCChhhHHHHHHHhh
Q 002834 391 VGNALVSFYAKCSDMEAAYRTFLMICRRDLISWNSMLDAFSESGYNSQFLNLL----NCMLMEGIRPDSITILTIIHFCT 466 (875)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~----~~m~~~g~~p~~~t~~~ll~~~~ 466 (875)
.+.++..=|.+.+++++|.+++.. -...+.+.|+...+-++- +-+.+.++++|..+..-++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 556667778888999999887643 233455667765554443 55566788888888777777776
Q ss_pred ccCchh-hHHHHHHHHH----HhcCCCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcccHHHHHHHhhcCCCh
Q 002834 467 TVLREG-MVKETHGYLI----KTGLLLGDTEHNIGNAILDAYAKCRNIKYAFNVFQSLLEKRNLVTFNPVISGYANCGSA 541 (875)
Q Consensus 467 ~~~~~~-~a~~~~~~~~----~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 541 (875)
.....+ .-..+.+.++ +.|- ....++.....+...|.+.+++.+|..-|- .-..+.+..+..++--+...+..
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~-~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~~ 183 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGD-YPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDES 183 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSS-CTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSCG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcCC
Confidence 655322 1223333333 3331 114566677788888999999999888773 22222335565555444333322
Q ss_pred HHHHHHHHhhhcCCCccHHHHHHHHHHcCCchHHHHHHHHHHH
Q 002834 542 DEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQA 584 (875)
Q Consensus 542 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 584 (875)
.++--. ....+-.|...++...|..+++...+
T Consensus 184 ~e~dlf-----------iaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 184 HTAPLY-----------CARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp GGHHHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccHHHH-----------HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 221111 12233345667777777776665543
No 260
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=77.94 E-value=16 Score=43.84 Aligned_cols=144 Identities=13% Similarity=0.017 Sum_probs=90.5
Q ss_pred hcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcCCHHHHHHHhccCCC---C------C----------
Q 002834 595 MSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCGSIFSASKIFQCHPQ---K------D---------- 655 (875)
Q Consensus 595 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~------~---------- 655 (875)
..++..+...+..+.+.++.. .-..++...-.+..+|..+|++++|.+.|++... . .
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~----~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIG----WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHH----HSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHHhhhHHHHHHHhh----hccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 345555666666666555332 2223555556677888889999999999987643 0 0
Q ss_pred -------hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCh--h--hHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCC
Q 002834 656 -------VVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDH--V--VITAVLSACSHAGLVDEGLEIFRSIEKVQGIK 724 (875)
Q Consensus 656 -------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~--~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 724 (875)
..-|..++..+-+++.++.++++-...++..-+-+. . .|..+..++...|++++|...+-.+.. ..
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd---~~ 968 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST---TP 968 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH---SS
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC---HH
Confidence 012455667777788888888877776664211111 1 466777888888888888887766643 22
Q ss_pred CChhHHHHHHHHhhcCCChHH
Q 002834 725 PTPEQYASLVDLLARGGQISD 745 (875)
Q Consensus 725 p~~~~~~~l~~~~~~~g~~~~ 745 (875)
-....+..++..++..|..++
T Consensus 969 ~r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 969 LKKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp SCHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHhCCChhh
Confidence 234567777777776655433
No 261
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=77.49 E-value=22 Score=27.30 Aligned_cols=90 Identities=11% Similarity=0.006 Sum_probs=62.6
Q ss_pred cCchHHHHHHHHHHHHhcCCCCchhhhHHHHHHHccCCchHHHHhhccCCCCCchhHHHHHHHHhcCCCChhHHHHHHHH
Q 002834 56 LADILLGKALHGYVTKLGHISCQAVSKALLNLYAKCGVIDDCYKLFGQVDNTDPVTWNILLSGFACSHVDDARVMNLFYN 135 (875)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~a~~~~~~ 135 (875)
.+..++|..|-+.....+- ...+.-.-+..+.+.|++++|..+.+.++.||..+|-++-.. +.| -..++...+.+
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlG-l~s~le~rL~~ 93 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLG-LGAALDRRLAG 93 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTT-CHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcc-cHHHHHHHHHH
Confidence 4455666666666665543 222222224567789999999999999999999999887664 567 77777777778
Q ss_pred hHhcCCCCCCcchHHHH
Q 002834 136 MHVRDQPKPNSVTVAIV 152 (875)
Q Consensus 136 m~~~~~~~~~~~~~~~l 152 (875)
+..+| .|....|..=
T Consensus 94 la~sg--~p~~q~Fa~g 108 (115)
T 2uwj_G 94 LGGSS--DPALADFAAG 108 (115)
T ss_dssp HHTCS--SHHHHHHHHH
T ss_pred HHhCC--CHHHHHHHHH
Confidence 88888 5555555443
No 262
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=76.72 E-value=24 Score=27.21 Aligned_cols=90 Identities=11% Similarity=0.003 Sum_probs=62.3
Q ss_pred cCchHHHHHHHHHHHHhcCCCCchhhhHHHHHHHccCCchHHHHhhccCCCCCchhHHHHHHHHhcCCCChhHHHHHHHH
Q 002834 56 LADILLGKALHGYVTKLGHISCQAVSKALLNLYAKCGVIDDCYKLFGQVDNTDPVTWNILLSGFACSHVDDARVMNLFYN 135 (875)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~a~~~~~~ 135 (875)
.+..++|..|-+.....+- ...+.-.-+..+.+.|++++|..+.+.++.||..+|-+|-.. +.| -..++...+.+
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlG-l~s~le~rL~~ 94 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLG-LGSALESRLNR 94 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHT-CHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcc-cHHHHHHHHHH
Confidence 4456667776666666543 222222234567789999999999999999999999888664 456 66777777778
Q ss_pred hHhcCCCCCCcchHHHH
Q 002834 136 MHVRDQPKPNSVTVAIV 152 (875)
Q Consensus 136 m~~~~~~~~~~~~~~~l 152 (875)
+..+| .|....|..=
T Consensus 95 la~sg--~p~~q~Fa~g 109 (116)
T 2p58_C 95 LARSQ--DPRIQTFVNG 109 (116)
T ss_dssp HTTCC--CHHHHHHHHH
T ss_pred HHhCC--CHHHHHHHHH
Confidence 88887 5555555443
No 263
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=76.58 E-value=24 Score=27.16 Aligned_cols=60 Identities=15% Similarity=0.075 Sum_probs=41.4
Q ss_pred HHhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhHH
Q 002834 633 HLYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVIT 695 (875)
Q Consensus 633 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 695 (875)
..+...|++++|..+.+...-||...|-+|- -.+.|..+++...+.++..+| .|....|.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALc--e~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGNPWPALEPWFALC--EWHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTCCCGGGHHHHHHH--HHHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHH--HHhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 3455678888888888888888888886653 346777777777777777665 45444443
No 264
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.04 E-value=79 Score=32.92 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=19.3
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHH
Q 002834 560 NLMIRVYAENDFPNQALSLFLKLQA 584 (875)
Q Consensus 560 ~~l~~~~~~~~~~~~A~~~~~~m~~ 584 (875)
..|...|...|++.+|..++..+..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~ 165 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQV 165 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4567777888888888888888754
No 265
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=75.91 E-value=25 Score=27.08 Aligned_cols=58 Identities=16% Similarity=0.056 Sum_probs=37.1
Q ss_pred HhHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCChhhH
Q 002834 634 LYAKCGSIFSASKIFQCHPQKDVVMLTAMIGGYAMHGMGKAALKVFSDMLELGVNPDHVVI 694 (875)
Q Consensus 634 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 694 (875)
.+...|++++|..+.+...-||...|-+|-. .+.|..+++...+.++..+| .|....|
T Consensus 49 SLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~F 106 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC-CHHHHHH
T ss_pred HHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 4456777777777777777777777765532 45666667666666666654 4444444
No 266
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=74.05 E-value=49 Score=29.62 Aligned_cols=59 Identities=15% Similarity=0.030 Sum_probs=26.2
Q ss_pred chhHhhhHHHHhHhcCChhHHHHHhhhcCCCCccchHHHHHHHHcCCCHHHHHHHHHHHH
Q 002834 285 DVSVCNALVSFYLRFGRTEEAELLFRRMKSRDLVSWNAIIAGYASNDEWLKALNLFCELI 344 (875)
Q Consensus 285 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 344 (875)
+..+....+.++.+.|+.+....+.+.+..++...-...+.++.+.|. .++...+..+.
T Consensus 120 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l 178 (201)
T 3ltj_A 120 DWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLA 178 (201)
T ss_dssp SHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 444444444455555544333333333444444444444444444443 23444444444
No 267
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=71.86 E-value=17 Score=29.81 Aligned_cols=62 Identities=18% Similarity=0.322 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHH
Q 002834 672 GKAALKVFSDMLELGVNPDHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVD 735 (875)
Q Consensus 672 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 735 (875)
.-+..+-++.+....+.|+.......+++|.+.+|+..|.++|+-++.+ ..+....|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 3355666777777788999999999999999999999999999988764 4444556766653
No 268
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=70.35 E-value=51 Score=39.51 Aligned_cols=60 Identities=7% Similarity=-0.172 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhcccCCCCc-----cHHHHHHHHHhcCCchhHHHHHHHHHh
Q 002834 762 WGTLLGACRIHHEVELGRVVANRLFEMEADNIG-----NYVVMSNLYAADARWDGVVEIRKLMKT 821 (875)
Q Consensus 762 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~ 821 (875)
|..++..+.+++.++.+.+.++.+++..+.+.. .|..+-..+...|+|++|-..+-.+.+
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd 966 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST 966 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC
Confidence 444445555556666666666666554433222 223333444555666666555544443
No 269
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=67.34 E-value=18 Score=29.72 Aligned_cols=60 Identities=8% Similarity=0.102 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHhhccCchhhHHHHHHHHHHhcCCCCCCchhHHHHHHH
Q 002834 438 QFLNLLNCMLMEGIRPDSITILTIIHFCTTVLREGMVKETHGYLIKTGLLLGDTEHNIGNAILD 501 (875)
Q Consensus 438 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~li~ 501 (875)
+..+-++.+....+-|+.......|++|.+.+|+..|.++++-++... .+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~----~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA----GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT----TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc----CCchhhHHHHHH
Confidence 344555566666788888888888888888888888888888777553 222444555443
No 270
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=66.47 E-value=75 Score=28.65 Aligned_cols=10 Identities=20% Similarity=0.205 Sum_probs=3.7
Q ss_pred HHHHHhHhcC
Q 002834 186 SLTSMYAKRG 195 (875)
Q Consensus 186 ~li~~~~~~g 195 (875)
..+.++.+.|
T Consensus 100 ~a~~aL~~~~ 109 (211)
T 3ltm_A 100 SAAVALGQIG 109 (211)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 3333333333
No 271
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=65.65 E-value=62 Score=30.43 Aligned_cols=88 Identities=9% Similarity=-0.008 Sum_probs=46.3
Q ss_pred HHhhccCCcchhhhHHHHHHHhCCCCCcc-------hhhHHHHHhH--hcCChhHHHHHhccC--------------CCC
Q 002834 154 SACARLGGIFAGKSLHAYVIKFGLERHTL-------VGNSLTSMYA--KRGLVHDAYSVFDSI--------------EDK 210 (875)
Q Consensus 154 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-------~~~~li~~~~--~~g~~~~A~~~~~~~--------------~~~ 210 (875)
...++.|+.+....+++.+.+.|..++.. -.+.|..+.. +.|+.+-+..+++.- ...
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~ 89 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDV 89 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCS
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccccc
Confidence 34445677777777777777776655533 2233333321 556666666665542 112
Q ss_pred CeeeHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCC
Q 002834 211 DVVSWNAVISGLSENKVLGDAFRLFSWMLTEPIKPN 246 (875)
Q Consensus 211 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~ 246 (875)
|..-++.|..+ +..|+.+ +.+.+.+.|..++
T Consensus 90 d~~g~t~L~~A-~~~g~~~----~v~~Ll~~ga~~~ 120 (260)
T 3jxi_A 90 YYRGQTALHIA-IERRCKH----YVELLVEKGADVH 120 (260)
T ss_dssp SEESBCHHHHH-HHTTCHH----HHHHHHHTTCCTT
T ss_pred ccCCCCHHHHH-HHcCCHH----HHHHHHhCCCCcC
Confidence 33344444433 4556644 4444555666664
No 272
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=65.17 E-value=95 Score=29.38 Aligned_cols=60 Identities=20% Similarity=0.124 Sum_probs=34.3
Q ss_pred HHHHHhHhcCChhHHHHHhccCC-C---CCeeeHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCC
Q 002834 186 SLTSMYAKRGLVHDAYSVFDSIE-D---KDVVSWNAVISGLSENKVLGDAFRLFSWMLTEPIKPN 246 (875)
Q Consensus 186 ~li~~~~~~g~~~~A~~~~~~~~-~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~ 246 (875)
+.+...+..|+.+-+..+++... . .+....+.+.. .+..++.....++++.+.+.|..++
T Consensus 150 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 150 TALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIH-ALLSSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHH-HHHCSCTTTHHHHHHHHHHTTCCSS
T ss_pred cHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHH-HHHccccchHHHHHHHHHHcCCCCC
Confidence 44555566777777777776532 1 22223333333 3445666666677777777777664
No 273
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=64.98 E-value=9 Score=36.15 Aligned_cols=58 Identities=12% Similarity=0.132 Sum_probs=45.2
Q ss_pred HHhhcCCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHhcccCCC
Q 002834 735 DLLARGGQISDAYSLVNRM-PVEA-DCNVWGTLLGACRIHHEVELGRVVANRLFEMEADN 792 (875)
Q Consensus 735 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 792 (875)
..+.+.|.+++|++.+..- ...| |...-..|...++..|+.++|..-++.+.+++|+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 3467889999998766554 4555 56666777788889999999999999999998874
No 274
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=61.90 E-value=33 Score=35.66 Aligned_cols=99 Identities=10% Similarity=-0.051 Sum_probs=71.1
Q ss_pred CchHHHHHHHHhHhcCCHHHHHHHhccCCC------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCChhhH
Q 002834 624 GVRLNGALLHLYAKCGSIFSASKIFQCHPQ------KDVVMLTAMIGGYAMHGMGKAALKVFSDMLEL---GVNPDHVVI 694 (875)
Q Consensus 624 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~ 694 (875)
-..+...+.+.|.++|+++.|.+.|.++.. .-+..+-..+..+...+++..+...+++.... +-.|+...-
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~ 209 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNR 209 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHH
Confidence 344678899999999999999999987664 23456777888889999999999999887642 323332221
Q ss_pred --HHHHHHHhhcCcHHHHHHHHHHhHHHhC
Q 002834 695 --TAVLSACSHAGLVDEGLEIFRSIEKVQG 722 (875)
Q Consensus 695 --~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 722 (875)
..-...+...+++..|.+.|-++...+.
T Consensus 210 lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 210 YKTYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 1112235667899999999988877544
No 275
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=60.65 E-value=29 Score=34.62 Aligned_cols=65 Identities=22% Similarity=0.249 Sum_probs=44.9
Q ss_pred hhhHHHHhHhcCChhHHHHHhhhcCCCC---ccchHHHHHHHHcCCC--HHHHHHHHHHHHHcCCCCCChh
Q 002834 289 CNALVSFYLRFGRTEEAELLFRRMKSRD---LVSWNAIIAGYASNDE--WLKALNLFCELITKEMIWPDSV 354 (875)
Q Consensus 289 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~~pd~~ 354 (875)
...++.-|...|+.++|.+.++++..|. ......+..++-+.++ .+.+.+++..+...| +-+...
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~g-lls~~q 289 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSS-TITIDQ 289 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT-CSCHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCC-CCCHHH
Confidence 4677888889999999999999998763 2233444455555433 456888888888877 444333
No 276
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.15 E-value=45 Score=34.58 Aligned_cols=93 Identities=11% Similarity=-0.032 Sum_probs=64.3
Q ss_pred hHhcHHHHhhcccchHHHHHHHHHHHHhcCC---CchHHHHHHHHhHhcCCHHHHHHHhccCCC-----CChhhHHHH--
Q 002834 593 TIMSLLPVCSQMASVHLLRQCHGYVIRACFD---GVRLNGALLHLYAKCGSIFSASKIFQCHPQ-----KDVVMLTAM-- 662 (875)
Q Consensus 593 ~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l-- 662 (875)
+...+..-+.+.|+.+.|.+.+..+...... -..++-.++.++...+++..+...+.++.. +|....+.+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5667778888899999999998888776433 556677788888888998888877776542 333322222
Q ss_pred --HHHHHHcCChHHHHHHHHHHHHC
Q 002834 663 --IGGYAMHGMGKAALKVFSDMLEL 685 (875)
Q Consensus 663 --i~~~~~~g~~~~A~~~~~~m~~~ 685 (875)
+..+...+++..|-..|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 22233567888888888776653
No 277
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=59.98 E-value=32 Score=33.40 Aligned_cols=42 Identities=7% Similarity=0.073 Sum_probs=33.8
Q ss_pred HHhCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHhcccCC
Q 002834 750 VNRMPVEADC--NVWGTLLGACRIHHEVELGRVVANRLFEMEAD 791 (875)
Q Consensus 750 ~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 791 (875)
|...+++|.. .++.+-++.+++++|+..|-..+++++++.|.
T Consensus 196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 239 (325)
T 3mv2_A 196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISS 239 (325)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 4444566654 55677778899999999999999999999985
No 278
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=58.76 E-value=1.7e+02 Score=30.12 Aligned_cols=39 Identities=10% Similarity=0.200 Sum_probs=18.9
Q ss_pred HHHHHHhCCCCCcc--hhhHHHHHhHhcCChhHHHHHhccC
Q 002834 169 HAYVIKFGLERHTL--VGNSLTSMYAKRGLVHDAYSVFDSI 207 (875)
Q Consensus 169 ~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~ 207 (875)
.+.+++.|..++.. ...+.+...++.|+.+-+..+++.-
T Consensus 96 v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~ 136 (437)
T 1n11_A 96 VKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKE 136 (437)
T ss_dssp HHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Confidence 33344455444432 1223344455566666666666543
No 279
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=56.09 E-value=1.4e+02 Score=28.35 Aligned_cols=58 Identities=10% Similarity=0.054 Sum_probs=25.2
Q ss_pred chhHhhhHHHHhHhcCChhHHHHHhhhcCCCCccchHHHHHHHHcCCCHHHHHHHHHHHHH
Q 002834 285 DVSVCNALVSFYLRFGRTEEAELLFRRMKSRDLVSWNAIIAGYASNDEWLKALNLFCELIT 345 (875)
Q Consensus 285 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 345 (875)
+..+....+.++.+.|+......+.+.+..++ .....+.++.+.|.. +++..+..+..
T Consensus 205 ~~~vR~~A~~aL~~~~~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~~-~~~~~L~~~l~ 262 (280)
T 1oyz_A 205 NEEVRIEAIIGLSYRKDKRVLSVLCDELKKNT--VYDDIIEAAGELGDK-TLLPVLDTMLY 262 (280)
T ss_dssp CHHHHHHHHHHHHHTTCGGGHHHHHHHHTSSS--CCHHHHHHHHHHCCG-GGHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCCHhhHHHHHHHhcCcc--HHHHHHHHHHhcCch-hhhHHHHHHHh
Confidence 44444455555555554444444444444333 222334444444442 34444444443
No 280
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=54.20 E-value=53 Score=29.41 Aligned_cols=61 Identities=8% Similarity=0.075 Sum_probs=41.6
Q ss_pred CChhhHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcCCCCcchHHHHH
Q 002834 367 KNLKVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRRDLISWNSML 427 (875)
Q Consensus 367 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 427 (875)
++......+|..|...|+.......|......+...|++.+|.++|+.-..........|.
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL~ 153 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLL 153 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHH
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHH
Confidence 3355777777777777776666657777777788888888888887765555444444443
No 281
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.16 E-value=58 Score=34.26 Aligned_cols=66 Identities=8% Similarity=0.054 Sum_probs=44.4
Q ss_pred hHHHHHHHHhhcCCChHHHHHHHHhCCCCCC----H--HHHHHHH-HHHHhcCChhHHHHHHHHHhcccCCCC
Q 002834 728 EQYASLVDLLARGGQISDAYSLVNRMPVEAD----C--NVWGTLL-GACRIHHEVELGRVVANRLFEMEADNI 793 (875)
Q Consensus 728 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~----~--~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~p~~~ 793 (875)
..++++++.|...+.++.|..++.+..++.. . ..|..++ .....++++..|.+.+..++..-|.+.
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 3677778888888888888888887753321 1 2333333 334567888888888888888777654
No 282
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=52.42 E-value=96 Score=28.35 Aligned_cols=214 Identities=11% Similarity=0.019 Sum_probs=100.1
Q ss_pred CCCcchHHHHHHHHhhcCChhhHHHHHHHHhhcCCC-CCCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCCch--
Q 002834 3 EPNAKSWITIINGFCRDGLHKEALSLFAHELQSSPS-VRHNHQLFSAVLKSCTSLADILLGKALHGYVTKLGHISCQA-- 79 (875)
Q Consensus 3 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 79 (875)
+-|....+.|.. .++.|+.+....+++ .+.. ..++...... +...+..|+. .+.+.+.+.|..++..
T Consensus 4 ~~d~~~~~~l~~-A~~~g~~~~~~~Ll~----~g~~~~~~~~~g~t~-L~~A~~~~~~----~~v~~Ll~~~~~~~~~~~ 73 (240)
T 3eu9_A 4 HIDDYSTWDIVK-ATQYGIYERCRELVE----AGYDVRQPDKENVTL-LHWAAINNRI----DLVKYYISKGAIVDQLGG 73 (240)
T ss_dssp CCSCGGGCCHHH-HHHTTCHHHHHHHHH----TTCCTTCCCTTSCCH-HHHHHHTTCH----HHHHHHHHTTCCTTCCBT
T ss_pred ccccccchHHHH-HHHcCChHHHHHHHH----cCCCcCCCCCCCCCH-HHHHHHhCCH----HHHHHHHHcCCcchhhcC
Confidence 334444444444 566777766655554 2211 1222222222 3333344555 4444555566433322
Q ss_pred -hhhHHHHHHHccCCchHHHHhhccCCCC---CchhHHHHHHHHhcCCCChhHHHHHHHHhHhcCCCCCCc---chHHHH
Q 002834 80 -VSKALLNLYAKCGVIDDCYKLFGQVDNT---DPVTWNILLSGFACSHVDDARVMNLFYNMHVRDQPKPNS---VTVAIV 152 (875)
Q Consensus 80 -~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~~l 152 (875)
...+.+...++.|+.+-+..+++.-..+ +...++.+..+. ..| +.+ +++.+.+.| ..++. ...+.+
T Consensus 74 ~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~-~~~-~~~----~~~~Ll~~~-~~~~~~~~~g~t~l 146 (240)
T 3eu9_A 74 DLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAA-QFG-HTS----IVAYLIAKG-QDVDMMDQNGMTPL 146 (240)
T ss_dssp TTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH-HTT-CHH----HHHHHHHTT-CCTTCCCTTSCCHH
T ss_pred CcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH-HcC-HHH----HHHHHHhcC-CCccccCCCCCcHH
Confidence 1345566666778887777777653332 233334444333 445 543 333344444 33332 223334
Q ss_pred HHHhhccCCcchhhhHHHHHHHhCCCCCcch---hhHHHHHhHhcCChhHHHHHhccCCCCCee---eHHHHHHHHHcCC
Q 002834 153 LSACARLGGIFAGKSLHAYVIKFGLERHTLV---GNSLTSMYAKRGLVHDAYSVFDSIEDKDVV---SWNAVISGLSENK 226 (875)
Q Consensus 153 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g 226 (875)
..++.. +... .+...+.+.|..++... ..+.+...+..|+.+-+.-+++.-..++.. -.+ -+...++.|
T Consensus 147 ~~a~~~-~~~~---~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-~l~~A~~~~ 221 (240)
T 3eu9_A 147 MWAAYR-THSV---DPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGES-ALDLAKQRK 221 (240)
T ss_dssp HHHHHH-CCSS---TTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCB-HHHHHHHTT
T ss_pred HHHHHh-CChH---HHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCC-HHHHHHHcC
Confidence 444433 3322 23334455665555432 234556667778877777777654333222 122 233345556
Q ss_pred CcchHHHHHHHH
Q 002834 227 VLGDAFRLFSWM 238 (875)
Q Consensus 227 ~~~~a~~l~~~m 238 (875)
+.+-+.-+++..
T Consensus 222 ~~~~v~~L~~~~ 233 (240)
T 3eu9_A 222 NVWMINHLQEAR 233 (240)
T ss_dssp CHHHHHHHHHHC
T ss_pred cHHHHHHHHHhh
Confidence 655544444443
No 283
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=51.36 E-value=76 Score=26.94 Aligned_cols=49 Identities=6% Similarity=-0.002 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcCCCCc
Q 002834 372 GKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRRDL 420 (875)
Q Consensus 372 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 420 (875)
...+|..|...|+.......|......+...|++.+|.++|+.-...+.
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 132 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQA 132 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 6667777777766655554566666666666666666666655433333
No 284
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=51.08 E-value=98 Score=28.40 Aligned_cols=21 Identities=10% Similarity=-0.130 Sum_probs=10.6
Q ss_pred HHHHhhcCChhhHHHHHHHHh
Q 002834 13 INGFCRDGLHKEALSLFAHEL 33 (875)
Q Consensus 13 l~~~~~~~~~~~a~~~~~~~~ 33 (875)
|...++.|+.+....+++.+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~ 33 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQ 33 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 344455566655555554333
No 285
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=50.13 E-value=67 Score=28.76 Aligned_cols=52 Identities=13% Similarity=0.220 Sum_probs=42.0
Q ss_pred CCChHHHHHHHHhhhcCCCcc-----HHHHHHHHHHcCCchHHHHHHHHHHHCCCCC
Q 002834 538 CGSADEAFMTFSRIYARDLTP-----WNLMIRVYAENDFPNQALSLFLKLQAQGMKP 589 (875)
Q Consensus 538 ~~~~~~A~~~~~~~~~~~~~~-----~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p 589 (875)
++....+..+|..|...++.+ |......+...|++.+|.++|+.-.+.+-+|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 445678888888887776665 8888888888999999999998888887777
No 286
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=50.07 E-value=19 Score=18.69 Aligned_cols=17 Identities=29% Similarity=0.466 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHHh
Q 002834 852 RDMIYWVLSILDEQIKD 868 (875)
Q Consensus 852 ~~~~~~~~~~l~~~~~~ 868 (875)
.+++|.+|+.|++.+.+
T Consensus 3 adelykeledlqerlrk 19 (27)
T 3twe_A 3 ADELYKELEDLQERLRK 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47899999999987765
No 287
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=47.35 E-value=2.4e+02 Score=28.56 Aligned_cols=282 Identities=11% Similarity=0.025 Sum_probs=149.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhccC----C---CcccHHHHHHHhhcCC-ChHHHHHHHHhhhc---CCCccH------
Q 002834 497 NAILDAYAKCRNIKYAFNVFQSLLEK----R---NLVTFNPVISGYANCG-SADEAFMTFSRIYA---RDLTPW------ 559 (875)
Q Consensus 497 ~~li~~~~~~g~~~~A~~~~~~~~~~----p---~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~---~~~~~~------ 559 (875)
..|...|.+.|+.++..+++.....- | .......++..+.... ..+.-.++..+..+ ..-..|
T Consensus 23 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l~ 102 (394)
T 3txn_A 23 LQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSLE 102 (394)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788999999999999999887652 1 3344566777776643 34444444444322 122333
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccchHHHHHHHHHHHHhcCCCchHHHHHHHHhHhcC
Q 002834 560 NLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMASVHLLRQCHGYVIRACFDGVRLNGALLHLYAKCG 639 (875)
Q Consensus 560 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 639 (875)
.-++..|...|++.+|.+++.++.+.--+.|..++ ++ .++-.-+.+|...+
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~--ll---------------------------ev~lle~~~~~~~~ 153 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNL--LV---------------------------EVQLLESKTYHALS 153 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHH--HH---------------------------HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchh--HH---------------------------HHHHHHHHHHHHhc
Confidence 25788899999999999999888764222232211 11 22233445666677
Q ss_pred CHHHHHHHhccCCC------CChhhH--HH--HHHHHH-HcCChHHHHHHHHHHHHC-C--CCCC---hhhHHHHHHHHh
Q 002834 640 SIFSASKIFQCHPQ------KDVVML--TA--MIGGYA-MHGMGKAALKVFSDMLEL-G--VNPD---HVVITAVLSACS 702 (875)
Q Consensus 640 ~~~~A~~~~~~~~~------~~~~~~--~~--li~~~~-~~g~~~~A~~~~~~m~~~-g--~~p~---~~~~~~ll~a~~ 702 (875)
++.++...+.+... +++..- -- -...+. ..+++..|...|-+..+. . ..|. ...|. ++.+..
T Consensus 154 n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYl-vL~aLl 232 (394)
T 3txn_A 154 NLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYM-LLCKIM 232 (394)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH-HHHHHH
T ss_pred cHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHH-HHHHHH
Confidence 77766666654321 222211 11 122345 678999988887666431 0 0121 11222 222222
Q ss_pred hcCcHHHHHHHHH-HhHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHHHhCC--CCCCHHH---HHHHHHHHHhcCChh
Q 002834 703 HAGLVDEGLEIFR-SIEKVQGIKPTPEQYASLVDLLARGGQISDAYSLVNRMP--VEADCNV---WGTLLGACRIHHEVE 776 (875)
Q Consensus 703 ~~g~~~~a~~~~~-~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~---~~~l~~~~~~~~~~~ 776 (875)
.++..+-..++. .....+ ..|+...+..++.+|. .+++.+..++++... +..|+.. |..|....
T Consensus 233 -~~~r~el~~~l~~~~~~~~-~~pei~~l~~L~~a~~-~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~I------- 302 (394)
T 3txn_A 233 -LGQSDDVNQLVSGKLAITY-SGRDIDAMKSVAEASH-KRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTM------- 302 (394)
T ss_dssp -TTCGGGHHHHHHSHHHHTT-CSHHHHHHHHHHHHHH-TTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHH-------
T ss_pred -cCCHHHHHHHhcccccccc-CCccHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH-------
Confidence 223222223322 211212 3455556666666654 577777777777663 4445532 22222211
Q ss_pred HHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 002834 777 LGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGVVEIRKLMKTRD 823 (875)
Q Consensus 777 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 823 (875)
-+..+.+++ .|-..-....++..+.- ..++++...-.|...|
T Consensus 303 -r~~~L~~i~--~pYsrIsl~~iA~~l~l--s~~evE~~L~~lI~dg 344 (394)
T 3txn_A 303 -LEQNLCRII--EPYSRVQVAHVAESIQL--PMPQVEKKLSQMILDK 344 (394)
T ss_dssp -HHHHHHHHH--TTCSEEEHHHHHHHHTC--CHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHh--HhhceeeHHHHHHHHCc--CHHHHHHHHHHHHHCC
Confidence 122333333 35444455556655433 5678888777777655
No 288
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=46.88 E-value=1.4e+02 Score=27.31 Aligned_cols=48 Identities=13% Similarity=-0.016 Sum_probs=19.4
Q ss_pred ccCCcchhhhHHHHHHHhCCCCCcc--hhhHHHHHhHhcCChhHHHHHhc
Q 002834 158 RLGGIFAGKSLHAYVIKFGLERHTL--VGNSLTSMYAKRGLVHDAYSVFD 205 (875)
Q Consensus 158 ~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~ 205 (875)
..|+.+.+..+++.+.+.|..++.. ...+.+...+..|+.+-+..+++
T Consensus 18 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 67 (241)
T 1k1a_A 18 VQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 67 (241)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHH
Confidence 3444444444444444444333322 11223333344444444444443
No 289
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=46.21 E-value=2.6e+02 Score=28.61 Aligned_cols=22 Identities=18% Similarity=0.101 Sum_probs=13.0
Q ss_pred HHHHHHHccCCchHHHHhhccC
Q 002834 83 ALLNLYAKCGVIDDCYKLFGQV 104 (875)
Q Consensus 83 ~l~~~~~~~g~~~~A~~~~~~~ 104 (875)
+.+...++.|+.+-+..+++.-
T Consensus 82 t~L~~A~~~g~~~~v~~Ll~~g 103 (437)
T 1n11_A 82 TPLHCAARIGHTNMVKLLLENN 103 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHT
T ss_pred CHHHHHHHCCCHHHHHHHHhCC
Confidence 4455555667766666666543
No 290
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=46.00 E-value=1.4e+02 Score=26.23 Aligned_cols=181 Identities=8% Similarity=-0.018 Sum_probs=82.9
Q ss_pred HHHHhhcCChhhHHHHHHHHhhcCCCCCCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCCch--hhhHHHHHHHc
Q 002834 13 INGFCRDGLHKEALSLFAHELQSSPSVRHNHQLFSAVLKSCTSLADILLGKALHGYVTKLGHISCQA--VSKALLNLYAK 90 (875)
Q Consensus 13 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~ 90 (875)
|...+..|+.+....++..-... ....+......|..++ ..|+. .+.+.+.+.|..++.. ...+.+...+.
T Consensus 9 L~~A~~~g~~~~v~~ll~~~~~~--~~~~~~~g~t~L~~A~-~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 81 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQDTTYQ--VDEVDTEGNTPLNIAV-HNNDI----EIAKALIDRGADINLQNSISDSPYLYAGA 81 (201)
T ss_dssp HHHHHHTTCHHHHHHHHTCTTCC--TTCCCTTSCCHHHHHH-HHTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHcCCCC--CCCCCCCCCCHHHHHH-HcCCH----HHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence 34445678877777666422211 1122232233343333 33444 4455555666554432 22344555667
Q ss_pred cCCchHHHHhhccCC----CCCchhHHHHHHHHhcCCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHhhccCCcchhh
Q 002834 91 CGVIDDCYKLFGQVD----NTDPVTWNILLSGFACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSACARLGGIFAGK 166 (875)
Q Consensus 91 ~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 166 (875)
.|+.+-+..+++.-. .++..-++.+..+. ..| +.+-+..+++.-...- -..+..-.+.|..++........-.
T Consensus 82 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~-~~~-~~~~v~~Ll~~g~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~ 158 (201)
T 3hra_A 82 QGRTEILAYMLKHATPDLNKHNRYGGNALIPAA-EKG-HIDNVKLLLEDGREDI-DFQNDFGYTALIEAVGLREGNQLYQ 158 (201)
T ss_dssp TTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHH-HTT-CHHHHHHHHHHCCCCT-TCCCTTSCCHHHHHHHSSCCSHHHH
T ss_pred cCCHHHHHHHHhccCcccccccCCCCcHHHHHH-HcC-CHHHHHHHHHcCCCCc-CCCCCCCCCHHHHHHHhccchhhHH
Confidence 788888877774432 12222233333332 445 5543333333320100 1223333344444443322233335
Q ss_pred hHHHHHHHhCCCCCcchh--hHHHHHhHhcCChhHHHHH
Q 002834 167 SLHAYVIKFGLERHTLVG--NSLTSMYAKRGLVHDAYSV 203 (875)
Q Consensus 167 ~~~~~~~~~g~~~~~~~~--~~li~~~~~~g~~~~A~~~ 203 (875)
++.+.+++.|..++.... .+-+...++.|+.+-+.-+
T Consensus 159 ~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L 197 (201)
T 3hra_A 159 DIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197 (201)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHH
Confidence 666777777766664421 2334444555555544443
No 291
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=45.44 E-value=1.3e+02 Score=28.11 Aligned_cols=53 Identities=9% Similarity=-0.122 Sum_probs=31.3
Q ss_pred HHHhhccCCcchhhhHHHHHHHhCCCCCc-------chhhHHHHHhHhc---CChhHHHHHhcc
Q 002834 153 LSACARLGGIFAGKSLHAYVIKFGLERHT-------LVGNSLTSMYAKR---GLVHDAYSVFDS 206 (875)
Q Consensus 153 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~-------~~~~~li~~~~~~---g~~~~A~~~~~~ 206 (875)
|..++..|+.+....+++.+.+.|..++. .-.+. +...+.. |+.+-+..+++.
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~-L~~A~~~~~~g~~~~v~~Ll~~ 68 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTC-LMKAVLNLQDGVNACIMPLLQI 68 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCH-HHHHHHTCBTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCH-HHHHHHccccchHHHHHHHHhc
Confidence 44455667777777777777777765543 23333 3334444 666666666544
No 292
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=44.21 E-value=1.2e+02 Score=25.68 Aligned_cols=46 Identities=9% Similarity=0.087 Sum_probs=38.4
Q ss_pred HHHHHHhhhcCCCcc-----HHHHHHHHHHcCCchHHHHHHHHHHHCCCCC
Q 002834 544 AFMTFSRIYARDLTP-----WNLMIRVYAENDFPNQALSLFLKLQAQGMKP 589 (875)
Q Consensus 544 A~~~~~~~~~~~~~~-----~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p 589 (875)
+..+|..|...++.+ |......+...|++.+|.++|+.-.+.+-+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 778888887777666 8888888889999999999999888887777
No 293
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=43.78 E-value=63 Score=31.38 Aligned_cols=42 Identities=17% Similarity=0.116 Sum_probs=33.3
Q ss_pred HHhCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHhcccCC
Q 002834 750 VNRMPVEADC--NVWGTLLGACRIHHEVELGRVVANRLFEMEAD 791 (875)
Q Consensus 750 ~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 791 (875)
|....++|.. .++.+-++.+.+++|+..|-..+++++++.|.
T Consensus 187 FT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 230 (320)
T 3mkr_B 187 FTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK 230 (320)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 4444566654 55677778899999999999999999999875
No 294
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=42.56 E-value=1.6e+02 Score=26.70 Aligned_cols=20 Identities=15% Similarity=0.114 Sum_probs=12.5
Q ss_pred HHHHHhhcCChhhHHHHHHH
Q 002834 12 IINGFCRDGLHKEALSLFAH 31 (875)
Q Consensus 12 ll~~~~~~~~~~~a~~~~~~ 31 (875)
.|...++.|+.+....+++.
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHh
Confidence 45556667777666666653
No 295
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=41.64 E-value=1.9e+02 Score=26.29 Aligned_cols=209 Identities=13% Similarity=0.100 Sum_probs=98.6
Q ss_pred HHHHHHhhcCChhhHHHHHHHHhhcCCCC-CCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCCc--hhhhHHHHH
Q 002834 11 TIINGFCRDGLHKEALSLFAHELQSSPSV-RHNHQLFSAVLKSCTSLADILLGKALHGYVTKLGHISCQ--AVSKALLNL 87 (875)
Q Consensus 11 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~ 87 (875)
+.|...++.|+.+.+..+++ .+..+ ..+......|..++ ..|+. .+.+.+.+.|..++. ....+.+..
T Consensus 13 t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~-~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~ 83 (237)
T 3b7b_A 13 SPLHAAAEAGHVDICHMLVQ----AGANIDTCSEDQRTPLMEAA-ENNHL----EAVKYLIKAGALVDPKDAEGSTCLHL 83 (237)
T ss_dssp CHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHH-HTTCH----HHHHHHHTTTCCCCCCCTTSCCHHHH
T ss_pred CHHHHHHHcCcHHHHHHHHH----cCCCcCccCCCCCCHHHHHH-HhCCH----HHHHHHHhCCCCCCCCCCCCCcHHHH
Confidence 34555567777765544443 22111 12222223333333 33454 344445555644332 223345555
Q ss_pred HHccCCchHHHHhhccCC-C---CCchhHHHHHHHHhcCCCChhHHHHHHHHhHhcCCCCCCcch--HHHHHHHhhccCC
Q 002834 88 YAKCGVIDDCYKLFGQVD-N---TDPVTWNILLSGFACSHVDDARVMNLFYNMHVRDQPKPNSVT--VAIVLSACARLGG 161 (875)
Q Consensus 88 ~~~~g~~~~A~~~~~~~~-~---~~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~--~~~ll~~~~~~~~ 161 (875)
.+..|+.+-+..+++.-+ . ++..-++.+..+. ..+ +.+ +++.+.+.| ..++... -.+.+..++..|+
T Consensus 84 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~-~~~-~~~----~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~ 156 (237)
T 3b7b_A 84 AAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWAT-EYK-HVD----LVKLLLSKG-SDINIRDNEENICLHWAAFSGC 156 (237)
T ss_dssp HHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHH-HTT-CHH----HHHHHHHTT-CCTTCCCTTSCCHHHHHHHHCC
T ss_pred HHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHH-HcC-CHH----HHHHHHHCC-CCCCccCCCCCCHHHHHHHCCC
Confidence 667788777777776541 1 2223333443333 344 433 334444444 4333221 1122333344454
Q ss_pred cchhhhHHHHHHHhCCCCCcc--hhhHHHHHhHhcCChhHHHHHhccCCCCCe---eeHHHHHHHHHcCCCcchHHHHHH
Q 002834 162 IFAGKSLHAYVIKFGLERHTL--VGNSLTSMYAKRGLVHDAYSVFDSIEDKDV---VSWNAVISGLSENKVLGDAFRLFS 236 (875)
Q Consensus 162 ~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~l~~ 236 (875)
.+ +.+.+++.|..++.. ...+.+...++.|+.+-+.-+++.-..++. .-.+ -+...+..|+...++++.+
T Consensus 157 ~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t-~l~~A~~~~~~~~~~~l~~ 231 (237)
T 3b7b_A 157 VD----IAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGET-PLQCASLNSQVWSALQMSK 231 (237)
T ss_dssp HH----HHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCC-HHHHSCTTCHHHHHHHHHH
T ss_pred HH----HHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCC-HHHHHHHHHHHHHHHHHHH
Confidence 43 445555666555543 123445555667777766666655333221 1112 2333456666677777777
Q ss_pred HHHh
Q 002834 237 WMLT 240 (875)
Q Consensus 237 ~m~~ 240 (875)
.+.+
T Consensus 232 ~l~d 235 (237)
T 3b7b_A 232 ALQD 235 (237)
T ss_dssp HHHH
T ss_pred Hhhc
Confidence 6654
No 296
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=39.37 E-value=1.4e+02 Score=27.61 Aligned_cols=121 Identities=10% Similarity=0.017 Sum_probs=69.3
Q ss_pred HHHHHHhhcCChhhHHHHHHHHhhcCCCCCC----ChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCCchhhhHHHH
Q 002834 11 TIINGFCRDGLHKEALSLFAHELQSSPSVRH----NHQLFSAVLKSCTSLADILLGKALHGYVTKLGHISCQAVSKALLN 86 (875)
Q Consensus 11 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 86 (875)
.-|..+....++++|.++.++....-.+..+ ........++.-...+.-..+..+...+ .. .++.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHH
Confidence 4577888999999999998877653211221 1223344444444433334444444444 22 445566667788
Q ss_pred HHHccCCchHHHHhhccC-------------CCCCchhHHHHHHHHhcCCCChhHHHHHHHHh
Q 002834 87 LYAKCGVIDDCYKLFGQV-------------DNTDPVTWNILLSGFACSHVDDARVMNLFYNM 136 (875)
Q Consensus 87 ~~~~~g~~~~A~~~~~~~-------------~~~~~~~~~~li~~~~~~~~~~~~a~~~~~~m 136 (875)
.+.+.|.-+.|..+|=+. .+.|+..|..-+.-...+ ....+.+.|...
T Consensus 100 ~L~rLg~~~~A~~lfL~~rs~~i~~~~r~l~~~gd~~~Yi~~Ls~i~Fs--~I~~t~~~f~~~ 160 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNRSNFIQDLILQIGSVDNPTNYLTQLAVIRFQ--TIKKTVEDFQDI 160 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHCC--CCSHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 899999999999988433 124555555444433222 345555555554
No 297
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=37.31 E-value=2.2e+02 Score=25.13 Aligned_cols=144 Identities=11% Similarity=0.043 Sum_probs=60.8
Q ss_pred HHHHHccCCchHHHHhhccCCCCCchhHHHHHHHHhcCCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHhhccCCcch
Q 002834 85 LNLYAKCGVIDDCYKLFGQVDNTDPVTWNILLSGFACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSACARLGGIFA 164 (875)
Q Consensus 85 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 164 (875)
+.++.+.|..+....+.+.+..++...-...+.++...+ .. ++...+..+.. .++...-...+.++.+.++.+.
T Consensus 35 ~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~-~~-~~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~~~~ 108 (201)
T 3ltj_A 35 AYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIG-DE-RAVEPLIKALK----DEDGWVRQSAAVALGQIGDERA 108 (201)
T ss_dssp HHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC-CG-GGHHHHHHHTT----CSSHHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhC-CH-HHHHHHHHHHc----CCCHHHHHHHHHHHHHhCcHHH
Confidence 333344444333334444444445444444444554444 33 23333333322 2344444455555555554332
Q ss_pred hhhHHHHHHHhCCCCCcchhhHHHHHhHhcCChhHHHHHhccCCCCCeeeHHHHHHHHHcCCCcchHHHHHHHHH
Q 002834 165 GKSLHAYVIKFGLERHTLVGNSLTSMYAKRGLVHDAYSVFDSIEDKDVVSWNAVISGLSENKVLGDAFRLFSWML 239 (875)
Q Consensus 165 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 239 (875)
...+.. +. -.++..+-...+.++.+.|+.+....+...+..++...-...+.++.+.|. .++...+..+.
T Consensus 109 ~~~L~~-~l---~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l 178 (201)
T 3ltj_A 109 VEPLIK-AL---KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLA 178 (201)
T ss_dssp HHHHHH-HT---TCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred HHHHHH-HH---cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 222222 21 134555555556666665554433333333434444333344444444433 23333443333
No 298
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=37.10 E-value=2.7e+02 Score=26.97 Aligned_cols=25 Identities=12% Similarity=0.203 Sum_probs=20.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhcc
Q 002834 497 NAILDAYAKCRNIKYAFNVFQSLLE 521 (875)
Q Consensus 497 ~~li~~~~~~g~~~~A~~~~~~~~~ 521 (875)
..++.-|...|+.++|...++++..
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el~~ 31 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDLNL 31 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCC
Confidence 5678888888999999999988754
No 299
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=36.25 E-value=2.3e+02 Score=25.59 Aligned_cols=22 Identities=9% Similarity=0.033 Sum_probs=13.0
Q ss_pred HHHHHHHccCCchHHHHhhccC
Q 002834 83 ALLNLYAKCGVIDDCYKLFGQV 104 (875)
Q Consensus 83 ~l~~~~~~~g~~~~A~~~~~~~ 104 (875)
+.+...+..|+.+-+..+++.-
T Consensus 77 t~L~~A~~~~~~~~v~~Ll~~g 98 (232)
T 2rfa_A 77 TALHIAVINQNVNLVRALLARG 98 (232)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTT
T ss_pred CHHHHHHHcCCHHHHHHHHhCC
Confidence 3444455667776666666553
No 300
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=36.04 E-value=2.8e+02 Score=25.97 Aligned_cols=50 Identities=10% Similarity=-0.016 Sum_probs=25.4
Q ss_pred hccCCcchhhhHHHHHHHhCCCC-------CcchhhHHHHHhH--hcCChhHHHHHhcc
Q 002834 157 ARLGGIFAGKSLHAYVIKFGLER-------HTLVGNSLTSMYA--KRGLVHDAYSVFDS 206 (875)
Q Consensus 157 ~~~~~~~~a~~~~~~~~~~g~~~-------~~~~~~~li~~~~--~~g~~~~A~~~~~~ 206 (875)
++.|+.+.++.+++.....+... +..-.+.|..+.. +.|+.+-+..+++.
T Consensus 21 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ 79 (273)
T 2pnn_A 21 VAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDV 79 (273)
T ss_dssp HHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHh
Confidence 34566666666666665555332 2233444444432 23555555555543
No 301
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=35.86 E-value=1.8e+02 Score=25.77 Aligned_cols=66 Identities=11% Similarity=0.112 Sum_probs=38.2
Q ss_pred hHHHHHHHHhCCCCCCH--HHHH-----HHHHHHHhcCChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCC
Q 002834 743 ISDAYSLVNRMPVEADC--NVWG-----TLLGACRIHHEVELGRVVANRLFEMEADNIGNYVVMSNLYAADAR 808 (875)
Q Consensus 743 ~~~A~~~~~~~~~~p~~--~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 808 (875)
++.|+.+++.+....+. ..-. .....|.+.|.+++|.+++++.+..+|.+-..-..|..+-.+...
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~ 166 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDT 166 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCC
Confidence 46677777777533332 1111 233668999999999999999999887766655555554443333
No 302
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=34.42 E-value=93 Score=30.29 Aligned_cols=28 Identities=7% Similarity=0.055 Sum_probs=21.3
Q ss_pred HHHHHHHHhcCCChhHHHHHHHhcCCCC
Q 002834 392 GNALVSFYAKCSDMEAAYRTFLMICRRD 419 (875)
Q Consensus 392 ~~~li~~~~~~g~~~~A~~~~~~~~~~~ 419 (875)
...++.-|...|+.++|...++++..|.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~ 33 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGE 33 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcc
Confidence 4567777888888888888888876654
No 303
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.86 E-value=2.8e+02 Score=29.19 Aligned_cols=62 Identities=16% Similarity=0.122 Sum_probs=45.0
Q ss_pred chhHhhhHHHHhHhcCChhHHHHHhhhcCCCCc-cchHHH-------HHHHHcCCCHHHHHHHHHHHHHc
Q 002834 285 DVSVCNALVSFYLRFGRTEEAELLFRRMKSRDL-VSWNAI-------IAGYASNDEWLKALNLFCELITK 346 (875)
Q Consensus 285 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~l-------i~~~~~~g~~~~a~~~~~~m~~~ 346 (875)
-..++|.+++.|...+.++.|..+.....-|.. .+-+-. ...+.-.+++.+|.+.|......
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 346788889999999999999999988876533 222222 24455678899998888887654
No 304
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=33.51 E-value=1.6e+02 Score=25.31 Aligned_cols=48 Identities=15% Similarity=0.136 Sum_probs=38.9
Q ss_pred HHHHHHHhhhcCCCcc-----HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCC
Q 002834 543 EAFMTFSRIYARDLTP-----WNLMIRVYAENDFPNQALSLFLKLQAQGMKPD 590 (875)
Q Consensus 543 ~A~~~~~~~~~~~~~~-----~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~ 590 (875)
.+..+|..|...++.+ |......+-..|++.+|.++|+.-.+.+-+|-
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 3667788887776666 88888888899999999999999888887774
No 305
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=33.25 E-value=1.7e+02 Score=25.27 Aligned_cols=44 Identities=11% Similarity=-0.031 Sum_probs=24.5
Q ss_pred HHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhHHHHHHHhc
Q 002834 372 GKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMI 415 (875)
Q Consensus 372 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 415 (875)
...+|..|...|+.......|......+-..|++.+|.++|..-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~G 122 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEG 122 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55566666666665554445555555555555555555555443
No 306
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=31.87 E-value=33 Score=25.63 Aligned_cols=23 Identities=13% Similarity=-0.097 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHhcCCccCC
Q 002834 853 DMIYWVLSILDEQIKDQVTISEI 875 (875)
Q Consensus 853 ~~~~~~~~~l~~~~~~~~~~~~~ 875 (875)
.+|...+++-...+|.+||-|||
T Consensus 16 irIl~~ieekinELk~dG~ePDI 38 (103)
T 2pk8_A 16 IRILGEIEEKMNELKMDGFNPDI 38 (103)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCE
T ss_pred HHHHHHHHHHHHHHHhcCCCCCe
Confidence 45666666666677788999996
No 307
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=31.60 E-value=3.7e+02 Score=26.50 Aligned_cols=116 Identities=13% Similarity=0.068 Sum_probs=55.8
Q ss_pred HHHHHHHccCCchHHHHhhccCCCCCc-hhHHHHHHHHhcCCCChhHHHHHHHHhHhcCCCCCCc---------------
Q 002834 83 ALLNLYAKCGVIDDCYKLFGQVDNTDP-VTWNILLSGFACSHVDDARVMNLFYNMHVRDQPKPNS--------------- 146 (875)
Q Consensus 83 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--------------- 146 (875)
+.+...+..|+.+-+..+++.-...+. .-++.|..+. ..| +.+-+..+++.-...| ..++.
T Consensus 55 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~-~~g-~~~~v~~Ll~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 131 (364)
T 3ljn_A 55 TALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAV-MAN-KTDLVVALVEGAKERG-QMPESLLNECDEREVNEIGS 131 (364)
T ss_dssp CHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHH-HTT-CHHHHHHHHHHHHHHT-CCHHHHHTCCCCCCEEEETT
T ss_pred cHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHH-HcC-CHHHHHHHHHhccccC-CCHHHHHhhcchHhhhhhcc
Confidence 344555566777666666665443322 2233333333 445 5555545555433323 22221
Q ss_pred -----chHHHHHHHhhccC--CcchhhhHHHHHHHhCCCCCcch--hhHHHHHhHhcCChhHHHHHhcc
Q 002834 147 -----VTVAIVLSACARLG--GIFAGKSLHAYVIKFGLERHTLV--GNSLTSMYAKRGLVHDAYSVFDS 206 (875)
Q Consensus 147 -----~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~ 206 (875)
.-.+.|..+ +..| +. ++.+.+++.|..++... ..+.+...+..|+.+-+..+++.
T Consensus 132 ~~~~~~g~t~L~~A-~~~g~~~~----~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 132 HVKHCKGQTALHWC-VGLGPEYL----EMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDT 195 (364)
T ss_dssp EEEEESCCCHHHHH-HHSCGGGH----HHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred ccCCCCCCCHHHHH-HHcCCchH----HHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 122333333 3334 33 34445555666555432 23344455667777777777764
No 308
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=30.61 E-value=2.9e+02 Score=24.53 Aligned_cols=153 Identities=12% Similarity=0.047 Sum_probs=76.3
Q ss_pred CchhhhHHHHHHHccCCchHHHHhhccCCCCCchhHHHHHHHHhcCCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHh
Q 002834 77 CQAVSKALLNLYAKCGVIDDCYKLFGQVDNTDPVTWNILLSGFACSHVDDARVMNLFYNMHVRDQPKPNSVTVAIVLSAC 156 (875)
Q Consensus 77 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ll~~~ 156 (875)
+..+-...+..+.+.|..+....+.+.+..++...-...+.++...+ +. ++...+..+.. .++...-...+.++
T Consensus 32 ~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~-~~-~~~~~L~~~l~----~~~~~vr~~a~~aL 105 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIG-DE-RAVEPLIKALK----DEDGWVRQSAAVAL 105 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHC-CG-GGHHHHHHHTT----CSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhC-CH-HHHHHHHHHHc----CCCHHHHHHHHHHH
Confidence 33333344444555555444444455555555555455555555555 43 33344433332 24455555566666
Q ss_pred hccCCcchhhhHHHHHHHhCCCCCcchhhHHHHHhHhcCChhHHHHHhccCCCCCeeeHHHHHHHHHcCCCcchHHHHHH
Q 002834 157 ARLGGIFAGKSLHAYVIKFGLERHTLVGNSLTSMYAKRGLVHDAYSVFDSIEDKDVVSWNAVISGLSENKVLGDAFRLFS 236 (875)
Q Consensus 157 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~ 236 (875)
.+.++.+....+.. ++ -.++..+-...+.++.+.|+.+....+.+.+..++...-...+.++.+-+. .++...+.
T Consensus 106 ~~~~~~~~~~~L~~-~l---~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~ 180 (211)
T 3ltm_A 106 GQIGDERAVEPLIK-AL---KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAME 180 (211)
T ss_dssp HHHCCGGGHHHHHH-HT---TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHH
T ss_pred HHhCcHHHHHHHHH-HH---hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHH
Confidence 66665433222222 22 245666666677777777765544444444445555444455555555544 34455555
Q ss_pred HHHh
Q 002834 237 WMLT 240 (875)
Q Consensus 237 ~m~~ 240 (875)
.+.+
T Consensus 181 ~~l~ 184 (211)
T 3ltm_A 181 KLAE 184 (211)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5543
No 309
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=30.05 E-value=2.2e+02 Score=23.28 Aligned_cols=69 Identities=12% Similarity=0.177 Sum_probs=37.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhccCC--CcccHHHHHHHhhcCCC--hHHHHHHHHhhhcCCCccHHHHHHH
Q 002834 497 NAILDAYAKCRNIKYAFNVFQSLLEKR--NLVTFNPVISGYANCGS--ADEAFMTFSRIYARDLTPWNLMIRV 565 (875)
Q Consensus 497 ~~li~~~~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~l~~~ 565 (875)
..++.-|...|+.++|...++++.... .......+..++-+.++ .+....++..+...+..+-..+.++
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~G 83 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRG 83 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHH
Confidence 567777888888888888888875320 22333344444433321 2344455555544444444444333
No 310
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=29.12 E-value=43 Score=22.96 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=20.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCChh
Q 002834 330 NDEWLKALNLFCELITKEMIWPDSV 354 (875)
Q Consensus 330 ~g~~~~a~~~~~~m~~~~~~~pd~~ 354 (875)
.-+++.|+..|.++...|.++|+.+
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHh
Confidence 4689999999999988886777654
No 311
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=28.78 E-value=72 Score=33.66 Aligned_cols=40 Identities=8% Similarity=0.005 Sum_probs=22.1
Q ss_pred CChhHHHHHHHHHhcccCCCCccHHHHHHHHHhcCCchhH
Q 002834 773 HEVELGRVVANRLFEMEADNIGNYVVMSNLYAADARWDGV 812 (875)
Q Consensus 773 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 812 (875)
...+.|...|+++..+.|++..+|..||.+....|+.-+|
T Consensus 166 ~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a 205 (497)
T 1ya0_A 166 NQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTT 205 (497)
T ss_dssp TCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHH
Confidence 3445555555555555555555555555555555554443
No 312
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=28.41 E-value=1.7e+02 Score=27.07 Aligned_cols=88 Identities=11% Similarity=-0.000 Sum_probs=48.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHC--CCCC----ChhhHHHHHHHHhhcCcHHHHHHHHHHhHHHhCCCCChhHHHHHHH
Q 002834 662 MIGGYAMHGMGKAALKVFSDMLEL--GVNP----DHVVITAVLSACSHAGLVDEGLEIFRSIEKVQGIKPTPEQYASLVD 735 (875)
Q Consensus 662 li~~~~~~g~~~~A~~~~~~m~~~--g~~p----~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 735 (875)
-+..+....++++|++++++..+. ++++ ........+..-.....-.-+..+.+++ . -.++.......+.
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~---~~~~~~~~r~~v~ 99 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-L---SSNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-H---TCSSHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-H---hcCCHHHHHHHHH
Confidence 356677778888888887766542 2232 1122223333222222333333344444 2 2445556666778
Q ss_pred HhhcCCChHHHHHHHHhC
Q 002834 736 LLARGGQISDAYSLVNRM 753 (875)
Q Consensus 736 ~~~~~g~~~~A~~~~~~~ 753 (875)
.+.+.|+.++|.++|-+.
T Consensus 100 ~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHH
Confidence 888889999999887543
No 313
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=28.01 E-value=1.4e+02 Score=22.96 Aligned_cols=38 Identities=11% Similarity=0.121 Sum_probs=30.9
Q ss_pred CChhHHHHHHHhcCCCCcchHHHHHHHHhccCChhHHH
Q 002834 403 SDMEAAYRTFLMICRRDLISWNSMLDAFSESGYNSQFL 440 (875)
Q Consensus 403 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 440 (875)
...+.|.++++.++.+...+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788899999999988899999999998777765553
No 314
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=27.92 E-value=1.3e+02 Score=24.58 Aligned_cols=66 Identities=15% Similarity=0.089 Sum_probs=43.8
Q ss_pred hHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCCCChhhHHHHHHHhcccC--chHHHHHHHHHHHHhcCCC
Q 002834 8 SWITIINGFCRDGLHKEALSLFAHELQSSPSVRHNHQLFSAVLKSCTSLA--DILLGKALHGYVTKLGHIS 76 (875)
Q Consensus 8 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~~~~~~~~~~~~~~~~ 76 (875)
..+.+|.-|...|+.++|.++++++.. | ......+...+..++-+.+ ..+....++..+.+.|+-+
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~--p-~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEV--P-HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC--G-GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCC--C-ccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 457899999999999999999988753 1 2233445555666666543 2455666666666655443
No 315
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=27.75 E-value=3.9e+02 Score=25.20 Aligned_cols=16 Identities=6% Similarity=0.040 Sum_probs=8.5
Q ss_pred HHHHHHHCCCCCCcch
Q 002834 578 LFLKLQAQGMKPDAVT 593 (875)
Q Consensus 578 ~~~~m~~~g~~p~~~~ 593 (875)
+.+.+.+.|..|+...
T Consensus 210 ~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 210 MLQALFKYDINIYSAN 225 (285)
T ss_dssp HHHHHTTSCBCSTTTT
T ss_pred HHHHHHHcCCCCCCCC
Confidence 4444555566665543
No 316
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=27.00 E-value=1.6e+02 Score=26.90 Aligned_cols=51 Identities=10% Similarity=0.113 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHhcCCCCchhhHHHHHHHHHhcCCChhHHHHHHHhcCCCCc
Q 002834 370 KVGKEIHGYFLRHPYLEEDAAVGNALVSFYAKCSDMEAAYRTFLMICRRDL 420 (875)
Q Consensus 370 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 420 (875)
+....+|..|...|+.......|......+...|++.+|.++|+.-.....
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 181 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKA 181 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 466677778887777666665677777777777777777777765443333
No 317
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.96 E-value=2e+02 Score=22.87 Aligned_cols=15 Identities=20% Similarity=0.605 Sum_probs=10.6
Q ss_pred CCchhHHHHHHHHHh
Q 002834 807 ARWDGVVEIRKLMKT 821 (875)
Q Consensus 807 g~~~~A~~~~~~~~~ 821 (875)
..|++|.++..+|+.
T Consensus 68 ~~we~Ar~lq~KM~~ 82 (116)
T 2dl1_A 68 PGWESARQMQQKMKE 82 (116)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 357788887777764
No 318
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=26.93 E-value=2.2e+02 Score=23.52 Aligned_cols=14 Identities=21% Similarity=0.161 Sum_probs=6.0
Q ss_pred HhhcCChhhHHHHH
Q 002834 16 FCRDGLHKEALSLF 29 (875)
Q Consensus 16 ~~~~~~~~~a~~~~ 29 (875)
.++.|+.+.+..++
T Consensus 9 A~~~g~~~~v~~ll 22 (156)
T 1bd8_A 9 AAARGDVQEVRRLL 22 (156)
T ss_dssp HHHHTCHHHHHHHH
T ss_pred HHHhCCHHHHHHHH
Confidence 34444444444444
No 319
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=26.80 E-value=1.3e+02 Score=26.72 Aligned_cols=91 Identities=10% Similarity=-0.002 Sum_probs=0.0
Q ss_pred HHHHhhcCCChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhccc-----
Q 002834 531 VISGYANCGSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMA----- 605 (875)
Q Consensus 531 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~----- 605 (875)
+|+++.++ .+..+++.|+-.+-+|.+.| .|....-..++-+....|
T Consensus 17 ~iSAf~KS----------------------------iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~ 67 (204)
T 2r9g_A 17 VISAFQKS----------------------------IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPA 67 (204)
T ss_dssp HHHHHHHH----------------------------HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHH
T ss_pred HHHHHHHH----------------------------HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHH
Q ss_pred chHHHHHHHHHHHHhcCC-CchHHHHHHHHhHhcCCHHHHHHHhcc
Q 002834 606 SVHLLRQCHGYVIRACFD-GVRLNGALLHLYAKCGSIFSASKIFQC 650 (875)
Q Consensus 606 ~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 650 (875)
.+..+...++...+.|.+ ........+-.++.+-+-..+...++.
T Consensus 68 Al~~a~aa~~a~~~iG~PE~~i~LaqaviyLA~aPKSNs~y~A~~~ 113 (204)
T 2r9g_A 68 AAARTVNAVLAAEKLGLPEARIPLADVVVDLCLSPKSNSAYMALDA 113 (204)
T ss_dssp HHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCccHHHHHHHHH
No 320
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=26.67 E-value=3.5e+02 Score=24.27 Aligned_cols=60 Identities=13% Similarity=-0.022 Sum_probs=36.0
Q ss_pred hHHHHHhHhcCChhHHHHHhccCCCC---CeeeHHHHHHHHHcCCCcchHHHHHHHHHhCCCCC
Q 002834 185 NSLTSMYAKRGLVHDAYSVFDSIEDK---DVVSWNAVISGLSENKVLGDAFRLFSWMLTEPIKP 245 (875)
Q Consensus 185 ~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p 245 (875)
.+.+...+..|+.+-+.-+++.-..+ |..-.+. +...+..|+.+-+..+++.+.+.|..+
T Consensus 122 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~-L~~A~~~~~~~~~~~i~~~Ll~~g~~~ 184 (232)
T 2rfa_A 122 EHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTV-LHILILQPNKTFACQMYNLLLSYDGGD 184 (232)
T ss_dssp SSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH-HHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred CCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCH-HHHHHHcCChHHHHHHHHHHHhcCCch
Confidence 34455556677777777777653332 2222233 344567777777777778787777654
No 321
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=26.39 E-value=3.9e+02 Score=24.76 Aligned_cols=58 Identities=16% Similarity=0.083 Sum_probs=30.2
Q ss_pred HHHhHhcCChhHHHHHhhhcC----CCCccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCC
Q 002834 293 VSFYLRFGRTEEAELLFRRMK----SRDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPD 352 (875)
Q Consensus 293 i~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd 352 (875)
+...+..|+.+-+..+++... .+|...++.+..+. ..++.....++++.+.+.| ..++
T Consensus 152 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~-~~~~~~~~~~i~~~Ll~~g-~~~~ 213 (285)
T 1wdy_A 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHAL-LSSDDSDVEAITHLLLDHG-ADVN 213 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHH-HCSCTTTHHHHHHHHHHTT-CCSS
T ss_pred HHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHH-HccccchHHHHHHHHHHcC-CCCC
Confidence 344455677777777766522 13333444444443 3444444455556666666 5444
No 322
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=26.05 E-value=4.2e+02 Score=24.98 Aligned_cols=51 Identities=12% Similarity=-0.054 Sum_probs=23.1
Q ss_pred hHHHHHhHhcCChhHHHHHhccCCCC-CeeeHHHHHHHHHcCCCcchHHHHH
Q 002834 185 NSLTSMYAKRGLVHDAYSVFDSIEDK-DVVSWNAVISGLSENKVLGDAFRLF 235 (875)
Q Consensus 185 ~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~l~ 235 (875)
.+.+...+..|+.+-+.-+++.-... +...-.+.+...+..|+.+-+.-++
T Consensus 130 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 181 (285)
T 3kea_A 130 KTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLL 181 (285)
T ss_dssp GSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHH
Confidence 34455555566666665555554332 2212223333344555554433333
No 323
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=25.95 E-value=1.6e+02 Score=26.53 Aligned_cols=57 Identities=16% Similarity=0.342 Sum_probs=38.9
Q ss_pred HHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhcccc-----hHHHHHHHHHHHHhcCC
Q 002834 567 AENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMAS-----VHLLRQCHGYVIRACFD 623 (875)
Q Consensus 567 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~~-----~~~a~~~~~~~~~~~~~ 623 (875)
.+..+++.|+-.+-+|.+.|-.|....-..++-+....|. +..+...++...+.|.+
T Consensus 46 iRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 46 IRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 7888999999999999999987876666666666555443 33444444445555554
No 324
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=25.80 E-value=2.1e+02 Score=26.55 Aligned_cols=94 Identities=12% Similarity=-0.017 Sum_probs=49.5
Q ss_pred HHHHHhhcCChhhHHHHHHHHhhcCCCCCCC-----hhhHHHHHHHhc--ccCchHHHHHHHHHHHHhc---------CC
Q 002834 12 IINGFCRDGLHKEALSLFAHELQSSPSVRHN-----HQLFSAVLKSCT--SLADILLGKALHGYVTKLG---------HI 75 (875)
Q Consensus 12 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~~ll~~~~--~~~~~~~~~~~~~~~~~~~---------~~ 75 (875)
.|...++.|+.+....+++.+...+..+... ..-...|..++. +.|+.+.+..+++.-...+ +.
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 87 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFR 87 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccc
Confidence 4556678899988877877666654222211 112334444432 5566666666655433211 11
Q ss_pred CCchhhhHHHHHHHccCCchHHHHhhccCC
Q 002834 76 SCQAVSKALLNLYAKCGVIDDCYKLFGQVD 105 (875)
Q Consensus 76 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 105 (875)
.......+.+...+..|+.+-+..+++.-.
T Consensus 88 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga 117 (260)
T 3jxi_A 88 DVYYRGQTALHIAIERRCKHYVELLVEKGA 117 (260)
T ss_dssp CSSEESBCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred ccccCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence 111123344555566778777777776543
No 325
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=25.74 E-value=3.3e+02 Score=23.66 Aligned_cols=77 Identities=8% Similarity=-0.093 Sum_probs=36.9
Q ss_pred HHhHhcCChhHHHHHhhhcC-C---CCccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhh--HHHHHHHHhccC
Q 002834 294 SFYLRFGRTEEAELLFRRMK-S---RDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVT--LVSLLPACAYLK 367 (875)
Q Consensus 294 ~~~~~~g~~~~A~~~~~~~~-~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t--~~~ll~~~~~~~ 367 (875)
...+..|+.+....++..-. . +|...++.+..+ +..|+.+ +++.+.+.| ..++... -.+.+...+..|
T Consensus 10 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~~~~~----~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~ 83 (201)
T 3hra_A 10 LEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIA-VHNNDIE----IAKALIDRG-ADINLQNSISDSPYLYAGAQG 83 (201)
T ss_dssp HHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHH-HHHTCHH----HHHHHHHTT-CCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHH-HHcCCHH----HHHHHHHcC-CCCCCCCCCCCCHHHHHHHcC
Confidence 34456778888887776544 2 333344444443 3445543 344444455 4444321 112233333445
Q ss_pred ChhhHHHHH
Q 002834 368 NLKVGKEIH 376 (875)
Q Consensus 368 ~~~~a~~~~ 376 (875)
+.+.++.++
T Consensus 84 ~~~~~~~Ll 92 (201)
T 3hra_A 84 RTEILAYML 92 (201)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 555444443
No 326
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=24.69 E-value=1.6e+02 Score=25.03 Aligned_cols=66 Identities=15% Similarity=0.089 Sum_probs=43.3
Q ss_pred hHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCCCChhhHHHHHHHhcccC--chHHHHHHHHHHHHhcCCC
Q 002834 8 SWITIINGFCRDGLHKEALSLFAHELQSSPSVRHNHQLFSAVLKSCTSLA--DILLGKALHGYVTKLGHIS 76 (875)
Q Consensus 8 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~~~~~~~~~~~~~~~~ 76 (875)
..+.+|.-|...|+.++|..+++++.. | ......+...+..++-+.+ ..+....++..+.+.++.+
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~--p-~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEV--P-HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC--G-GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCC--C-cchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 457899999999999999999987753 1 2333445555566666532 2455666666666655443
No 327
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=24.05 E-value=5.2e+02 Score=25.35 Aligned_cols=54 Identities=13% Similarity=0.049 Sum_probs=29.2
Q ss_pred HHHhHhcCChhHHHHHhhhcCCCCc-cchHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 002834 293 VSFYLRFGRTEEAELLFRRMKSRDL-VSWNAIIAGYASNDEWLKALNLFCELITKE 347 (875)
Q Consensus 293 i~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 347 (875)
+...+..|+.+-+.-+++.-...+. ..++. +...+..|+.+-+..+++.....|
T Consensus 57 L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~~~~~~ 111 (364)
T 3ljn_A 57 LHLACKFGCVDTAKYLASVGEVHSLWHGQKP-IHLAVMANKTDLVVALVEGAKERG 111 (364)
T ss_dssp HHHHHHHCCHHHHHHHHHHCCCCCCBTTBCH-HHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHCCCCccccCCCCH-HHHHHHcCCHHHHHHHHHhccccC
Confidence 3444556677666666665544333 23333 333455677776666666544434
No 328
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=24.02 E-value=1.3e+02 Score=30.11 Aligned_cols=60 Identities=8% Similarity=0.187 Sum_probs=39.2
Q ss_pred hhHHHHHHHccCCchHHHHhhccCCCCC----chhHHHHHHHHhcCCCChhHHHHHHHHhHhcC
Q 002834 81 SKALLNLYAKCGVIDDCYKLFGQVDNTD----PVTWNILLSGFACSHVDDARVMNLFYNMHVRD 140 (875)
Q Consensus 81 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~ 140 (875)
..+++.-|...|++++|...++++..|+ .+.+..+..++-+.....+.+..++..+...+
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~ 78 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEG 78 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCC
Confidence 3467888888899999999999887774 23344444455443312344556777777766
No 329
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=23.58 E-value=4.6e+02 Score=24.53 Aligned_cols=47 Identities=4% Similarity=-0.084 Sum_probs=21.5
Q ss_pred chhHhhhHHHHhHhcCChhHHHHHhhhcCCCCccchHHHHHHHHcCC
Q 002834 285 DVSVCNALVSFYLRFGRTEEAELLFRRMKSRDLVSWNAIIAGYASND 331 (875)
Q Consensus 285 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 331 (875)
|..+....+..+.+.|..+....+.+.+..++...-...+.++.+.|
T Consensus 36 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~ 82 (280)
T 1oyz_A 36 NSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIK 82 (280)
T ss_dssp SHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 44444444455555554433333444444454444444445555444
No 330
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=23.52 E-value=5.8e+02 Score=26.35 Aligned_cols=16 Identities=6% Similarity=-0.066 Sum_probs=7.3
Q ss_pred HHHhcCCChhHHHHHH
Q 002834 397 SFYAKCSDMEAAYRTF 412 (875)
Q Consensus 397 ~~~~~~g~~~~A~~~~ 412 (875)
+.+...|++++|-++-
T Consensus 369 ~~l~~~g~y~~AA~~a 384 (494)
T 1bpo_A 369 NALFAQGNYSEAAKVA 384 (494)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHH
Confidence 3344445555544443
No 331
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=23.42 E-value=1.6e+02 Score=22.66 Aligned_cols=35 Identities=14% Similarity=0.108 Sum_probs=20.4
Q ss_pred CChHHHHHHHHhhhcCCCccHHHHHHHHHHcCCch
Q 002834 539 GSADEAFMTFSRIYARDLTPWNLMIRVYAENDFPN 573 (875)
Q Consensus 539 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 573 (875)
.+.+.|.++++.+...++..|..++.++...|+..
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~ 85 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDM 85 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHH
Confidence 34556666666666666666666666655545443
No 332
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=23.01 E-value=2e+02 Score=20.85 Aligned_cols=61 Identities=13% Similarity=0.103 Sum_probs=40.2
Q ss_pred HhHhcCCCCCCcchHHHHHHHhhccC-CcchhhhHHHHHHHhCCCCCcchhhHHHHHhHhcCCh
Q 002834 135 NMHVRDQPKPNSVTVAIVLSACARLG-GIFAGKSLHAYVIKFGLERHTLVGNSLTSMYAKRGLV 197 (875)
Q Consensus 135 ~m~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 197 (875)
.+++.| +..+..- ..++..+...+ ..-.+.++.+.+.+.+...+..|....++.+.+.|-+
T Consensus 7 ~l~~~g-~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 7 ALKKAG-LKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHTT-CCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcC-CCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 455566 6666544 44556666554 5667788888887776666666777777777777654
No 333
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=22.66 E-value=3.1e+02 Score=22.55 Aligned_cols=15 Identities=20% Similarity=0.246 Sum_probs=7.2
Q ss_pred HhcCChhHHHHHhhh
Q 002834 297 LRFGRTEEAELLFRR 311 (875)
Q Consensus 297 ~~~g~~~~A~~~~~~ 311 (875)
+..|+.+-+.-+++.
T Consensus 109 ~~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 109 VQEGHTAVVSFLAAE 123 (156)
T ss_dssp HHHTCHHHHHHHHTT
T ss_pred HHhChHHHHHHHHhc
Confidence 344555555444444
No 334
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=22.63 E-value=2.1e+02 Score=24.30 Aligned_cols=69 Identities=12% Similarity=0.177 Sum_probs=37.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhccC--CCcccHHHHHHHhhcCCC--hHHHHHHHHhhhcCCCccHHHHHHH
Q 002834 497 NAILDAYAKCRNIKYAFNVFQSLLEK--RNLVTFNPVISGYANCGS--ADEAFMTFSRIYARDLTPWNLMIRV 565 (875)
Q Consensus 497 ~~li~~~~~~g~~~~A~~~~~~~~~~--p~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~l~~~ 565 (875)
..++.-|...|+.++|...++++... -.......+..++-+.++ .+.+..++..+...+..+-..+..+
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~G 85 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRG 85 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHH
Confidence 56777888888888888888887542 022333444444433221 3344455555555555544444433
No 335
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=22.29 E-value=5.4e+02 Score=24.87 Aligned_cols=80 Identities=10% Similarity=-0.029 Sum_probs=41.1
Q ss_pred HHHhHhcCChhHHHHHhhhcC----CCCccchHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCC
Q 002834 293 VSFYLRFGRTEEAELLFRRMK----SRDLVSWNAIIAGYASNDEWLKALNLFCELITKEMIWPDSVTLVSLLPACAYLKN 368 (875)
Q Consensus 293 i~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~pd~~t~~~ll~~~~~~~~ 368 (875)
+...+..|..+....+++.-. .+|..-++.|..+ ++.|+.+ +.+.+.+.| ..+|..+ .+...++.|+
T Consensus 243 L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A-~~~g~~~----iv~~Ll~~G-Ad~n~~~---~L~~A~~~~~ 313 (337)
T 4g8k_A 243 LILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA-VELKLKK----IAELLCKRG-ASTDCGD---LVMTARRNYD 313 (337)
T ss_dssp HHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHH-HHTTCHH----HHHHHHTTS-CSSTTCC---HHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHH-HHcCCHH----HHHHHHHCC-CCCCCCC---HHHHHHHcCC
Confidence 344566777777777665422 2344445555444 4456654 334445667 6677654 2333344455
Q ss_pred hhhHHHHHHHHHhcCCC
Q 002834 369 LKVGKEIHGYFLRHPYL 385 (875)
Q Consensus 369 ~~~a~~~~~~~~~~~~~ 385 (875)
.+ +.+.+++.|-.
T Consensus 314 ~~----iv~~Ll~~GA~ 326 (337)
T 4g8k_A 314 HS----LVKVLLSHGAK 326 (337)
T ss_dssp HH----HHHHHHHTTCC
T ss_pred HH----HHHHHHHCcCC
Confidence 43 33444455533
No 336
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=22.29 E-value=4.7e+02 Score=24.22 Aligned_cols=215 Identities=7% Similarity=-0.121 Sum_probs=98.6
Q ss_pred HHHHHhhcCChhhHHHHHHHHhhcCCCCCCChhhHHHHHHHhcccCchHHHHHHHHHHHHhcCCCCch--hhhHHHHHHH
Q 002834 12 IINGFCRDGLHKEALSLFAHELQSSPSVRHNHQLFSAVLKSCTSLADILLGKALHGYVTKLGHISCQA--VSKALLNLYA 89 (875)
Q Consensus 12 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~ 89 (875)
.|...++.|+.+.+..+++.-.....-...+..-...|..++ ..|+. .+.+.+++.|..++.. ...+.+...+
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~-~~g~~----~~v~~Ll~~ga~~~~~~~~g~tpL~~A~ 86 (282)
T 1oy3_D 12 ALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAA-ILGEA----STVEKLYAAGAGVLVAERGGHTALHLAC 86 (282)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHH-HHTCH----HHHHHHHHTTCCSSCCCTTSCCHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHH-HcCCH----HHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence 455556788887666665432210000112222222333332 34444 4455556667555432 2344556667
Q ss_pred ccCCchHHHHhhccCCCCCchhHHHHHH---------------HHhcCCCChhHHHHHHHHhHhcCCC---CCCcchHHH
Q 002834 90 KCGVIDDCYKLFGQVDNTDPVTWNILLS---------------GFACSHVDDARVMNLFYNMHVRDQP---KPNSVTVAI 151 (875)
Q Consensus 90 ~~g~~~~A~~~~~~~~~~~~~~~~~li~---------------~~~~~~~~~~~a~~~~~~m~~~~~~---~~~~~~~~~ 151 (875)
+.|+.+-+..+++.-..++.......+. .....+ ... .........+ . ..+..-.+.
T Consensus 87 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~-~~~~~~~~~g~t~ 161 (282)
T 1oy3_D 87 RVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPN-PEN---EEEPRDEDWR-LQLEAENYDGHTP 161 (282)
T ss_dssp TTTCHHHHHHHSSSCCSSCCCC---------------------------------------CCCGG-GGTTCCCTTSCCH
T ss_pred HcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccc-cch---hhhhhhhhhh-hcCCCcCCCCcCH
Confidence 7888888888877543321111100000 000000 000 0011111111 1 122222233
Q ss_pred HHHHhhccCCcchhhhHHHHHHHhCCCCCcch---hhHHHHHhHhcCChhHHHHHhccCCCCCee---eHHHHHHHHHcC
Q 002834 152 VLSACARLGGIFAGKSLHAYVIKFGLERHTLV---GNSLTSMYAKRGLVHDAYSVFDSIEDKDVV---SWNAVISGLSEN 225 (875)
Q Consensus 152 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~ 225 (875)
| ...+..|+.+ +.+.+++.|..++... ..+.+...+..|+.+-+.-+++.-..++.. -.+.+ ...++.
T Consensus 162 L-~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL-~~A~~~ 235 (282)
T 1oy3_D 162 L-HVAVIHKDAE----MVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPL-GSALLR 235 (282)
T ss_dssp H-HHHHHTTCHH----HHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHTS
T ss_pred H-HHHHHcCCHH----HHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHH-HHHHHc
Confidence 3 3344456544 4555566777666542 445666677889988888887764433322 22333 334455
Q ss_pred CCcchHHHHHHHHHhCCCCCC
Q 002834 226 KVLGDAFRLFSWMLTEPIKPN 246 (875)
Q Consensus 226 g~~~~a~~l~~~m~~~g~~p~ 246 (875)
|+. ++.+.+.+.|..|+
T Consensus 236 ~~~----~~v~~Ll~~ga~~~ 252 (282)
T 1oy3_D 236 PNP----ILARLLRAHGAPEP 252 (282)
T ss_dssp SCH----HHHHHHHHTTCCCC
T ss_pred CCc----HHHHHHHHcCCCcC
Confidence 654 45555667777765
No 337
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=22.03 E-value=4.3e+02 Score=24.04 Aligned_cols=32 Identities=13% Similarity=0.150 Sum_probs=22.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 002834 659 LTAMIGGYAMHGMGKAALKVFSDMLELGVNPD 690 (875)
Q Consensus 659 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 690 (875)
|......+...|++.+|.++|+.-++.+-+|-
T Consensus 153 Ye~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 153 YEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 45555666677777888888877777766663
No 338
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=22.00 E-value=1.3e+02 Score=26.68 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=29.5
Q ss_pred HHcCCchHHHHHHHHHHHCCCCCCcchHhcHHHHhhccc
Q 002834 567 AENDFPNQALSLFLKLQAQGMKPDAVTIMSLLPVCSQMA 605 (875)
Q Consensus 567 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~a~~~~~ 605 (875)
.+..+++.|+-.+-+|.+.|-.|....-..++-+....|
T Consensus 18 iRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 18 VRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 678899999999999999988776655555555555444
No 339
>3syn_E ATP-binding protein YLXH; SRP GTPase, flagellum, protein transport, biosynthetic prote GTPase activating protein, type 3 secretion system; HET: GDP; 3.06A {Bacillus subtilis}
Probab=21.06 E-value=49 Score=16.55 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=14.0
Q ss_pred hcCCchhHHHHHHHHHhC
Q 002834 805 ADARWDGVVEIRKLMKTR 822 (875)
Q Consensus 805 ~~g~~~~A~~~~~~~~~~ 822 (875)
+.+++++|..++.+|..+
T Consensus 2 qmnrydqaatlrakmekr 19 (23)
T 3syn_E 2 QMNRYDQAATLRAKMEKR 19 (26)
T ss_pred ccchHHHHHHHHHHHHHH
Confidence 356889999999888654
No 340
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=20.54 E-value=6.3e+02 Score=25.04 Aligned_cols=71 Identities=13% Similarity=0.209 Sum_probs=42.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhccCC--CcccHHHHHHHhhcCCC--hHHHHHHHHhhhcCCCccHHHHHHHHH
Q 002834 497 NAILDAYAKCRNIKYAFNVFQSLLEKR--NLVTFNPVISGYANCGS--ADEAFMTFSRIYARDLTPWNLMIRVYA 567 (875)
Q Consensus 497 ~~li~~~~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~l~~~~~ 567 (875)
..++.-|...|+.++|...++++.... .......+..++-+.++ .+....++..+...+..+-..+..++.
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~ 295 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYE 295 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 567788888899999999998886531 22333444445443322 344555666666556655555554443
No 341
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=20.48 E-value=3e+02 Score=25.65 Aligned_cols=98 Identities=12% Similarity=-0.066 Sum_probs=51.5
Q ss_pred CcchHHHHHHHHhhcCChhhHHHHHHHHhhcCCCCC-----CChhhHHHHHHHhc--ccCchHHHHHHHHHHHHhc----
Q 002834 5 NAKSWITIINGFCRDGLHKEALSLFAHELQSSPSVR-----HNHQLFSAVLKSCT--SLADILLGKALHGYVTKLG---- 73 (875)
Q Consensus 5 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~~ll~~~~--~~~~~~~~~~~~~~~~~~~---- 73 (875)
|..-.+ .|...++.|+.+....+++.....+..+. .+..-...|..++. +.|+.+.+..+++.-...+
T Consensus 10 d~~g~t-~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~ 88 (273)
T 2pnn_A 10 RLYDRR-SIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQ 88 (273)
T ss_dssp -CCCHH-HHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHH
T ss_pred Ccccch-HHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhH
Confidence 333344 44555678999888888876665432221 13333445555553 4577766666665432211
Q ss_pred -----CC-CCchhhhHHHHHHHccCCchHHHHhhccC
Q 002834 74 -----HI-SCQAVSKALLNLYAKCGVIDDCYKLFGQV 104 (875)
Q Consensus 74 -----~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 104 (875)
.. .+.. ..+-+...++.|+.+-+..+++.-
T Consensus 89 ~i~~~~~~~d~~-g~tpL~~A~~~g~~~~v~~Ll~~g 124 (273)
T 2pnn_A 89 FVNASYTDSYYK-GQTALHIAIERRNMTLVTLLVENG 124 (273)
T ss_dssp HHTCCCCSTTTT-TCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HhhcccccccCC-CCCHHHHHHHcCCHHHHHHHHHCC
Confidence 11 1112 333444455677777777777654
Done!