Query 002835
Match_columns 875
No_of_seqs 502 out of 2425
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 11:45:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002835.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002835hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1451 Oligophrenin-1 and rel 100.0 3.1E-60 6.7E-65 526.2 27.1 355 3-438 206-570 (812)
2 KOG4271 Rho-GTPase activating 100.0 1.3E-46 2.8E-51 435.0 19.2 603 162-795 286-947 (1100)
3 cd04372 RhoGAP_chimaerin RhoGA 100.0 6.6E-40 1.4E-44 336.8 19.1 188 230-435 1-194 (194)
4 cd04386 RhoGAP_nadrin RhoGAP_n 100.0 1.7E-39 3.7E-44 335.8 20.0 196 227-438 2-202 (203)
5 cd04402 RhoGAP_ARHGAP20 RhoGAP 100.0 3.3E-39 7.1E-44 331.1 20.4 190 229-438 1-191 (192)
6 cd04390 RhoGAP_ARHGAP22_24_25 100.0 4E-39 8.7E-44 332.0 19.3 190 228-435 1-199 (199)
7 cd04391 RhoGAP_ARHGAP18 RhoGAP 100.0 8.6E-39 1.9E-43 333.7 19.6 198 229-438 1-208 (216)
8 cd04375 RhoGAP_DLC1 RhoGAP_DLC 100.0 2E-38 4.3E-43 331.9 20.0 205 227-436 2-215 (220)
9 cd04407 RhoGAP_myosin_IXB RhoG 100.0 2.1E-38 4.6E-43 323.7 19.7 184 230-430 1-186 (186)
10 cd04384 RhoGAP_CdGAP RhoGAP_Cd 100.0 1.3E-38 2.8E-43 327.6 18.1 189 228-430 1-195 (195)
11 cd04383 RhoGAP_srGAP RhoGAP_sr 100.0 3.2E-38 7E-43 322.9 20.2 183 228-430 1-188 (188)
12 cd04381 RhoGap_RalBP1 RhoGap_R 100.0 1.4E-38 3.1E-43 323.9 17.0 175 230-437 1-181 (182)
13 cd04403 RhoGAP_ARHGAP27_15_12_ 100.0 3.8E-38 8.2E-43 322.0 20.0 182 230-430 1-187 (187)
14 cd04397 RhoGAP_fLRG1 RhoGAP_fL 100.0 4E-38 8.7E-43 328.1 18.8 190 230-438 1-210 (213)
15 cd04395 RhoGAP_ARHGAP21 RhoGAP 100.0 7.5E-38 1.6E-42 322.0 20.0 189 229-435 1-196 (196)
16 cd04404 RhoGAP-p50rhoGAP RhoGA 100.0 1E-37 2.2E-42 320.6 19.9 190 226-435 2-195 (195)
17 cd04408 RhoGAP_GMIP RhoGAP_GMI 100.0 8.6E-38 1.9E-42 322.7 19.0 185 230-430 1-200 (200)
18 cd04406 RhoGAP_myosin_IXA RhoG 100.0 1.1E-37 2.4E-42 318.5 17.8 183 230-429 1-185 (186)
19 cd04394 RhoGAP-ARHGAP11A RhoGA 100.0 2E-37 4.3E-42 320.5 19.2 191 229-436 1-196 (202)
20 cd04398 RhoGAP_fRGD1 RhoGAP_fR 100.0 2E-37 4.3E-42 317.5 18.0 184 230-435 1-192 (192)
21 cd04396 RhoGAP_fSAC7_BAG7 RhoG 100.0 2.8E-37 6.1E-42 324.2 18.9 187 229-435 1-225 (225)
22 cd04376 RhoGAP_ARHGAP6 RhoGAP_ 100.0 3.2E-37 6.9E-42 319.8 19.0 186 241-438 6-203 (206)
23 cd04378 RhoGAP_GMIP_PARG1 RhoG 100.0 3.9E-37 8.4E-42 318.4 19.0 186 230-430 1-203 (203)
24 cd04373 RhoGAP_p190 RhoGAP_p19 100.0 4.5E-37 9.8E-42 313.7 18.6 160 230-390 1-163 (185)
25 cd04409 RhoGAP_PARG1 RhoGAP_PA 100.0 8.4E-37 1.8E-41 317.8 19.1 186 230-430 1-211 (211)
26 cd04400 RhoGAP_fBEM3 RhoGAP_fB 100.0 6.7E-37 1.5E-41 313.5 17.9 176 229-437 1-189 (190)
27 cd04377 RhoGAP_myosin_IX RhoGA 100.0 1.3E-36 2.8E-41 310.4 18.7 184 230-430 1-186 (186)
28 cd04393 RhoGAP_FAM13A1a RhoGAP 100.0 1.8E-36 3.9E-41 310.1 19.3 183 228-430 1-189 (189)
29 cd04387 RhoGAP_Bcr RhoGAP_Bcr: 100.0 2.2E-36 4.8E-41 311.3 18.7 161 230-391 1-166 (196)
30 cd04379 RhoGAP_SYD1 RhoGAP_SYD 100.0 7.7E-36 1.7E-40 309.6 20.2 194 230-431 1-206 (207)
31 KOG4407 Predicted Rho GTPase-a 100.0 8.3E-37 1.8E-41 358.9 14.5 334 84-440 923-1359(1973)
32 cd04392 RhoGAP_ARHGAP19 RhoGAP 100.0 8.1E-36 1.8E-40 309.7 18.0 184 230-438 1-199 (208)
33 cd04385 RhoGAP_ARAP RhoGAP_ARA 100.0 1.7E-35 3.8E-40 301.7 19.0 179 231-431 2-184 (184)
34 cd04374 RhoGAP_Graf RhoGAP_Gra 100.0 4E-35 8.8E-40 303.3 17.9 170 242-430 26-203 (203)
35 cd04382 RhoGAP_MgcRacGAP RhoGA 100.0 6.1E-35 1.3E-39 299.9 19.1 177 241-434 14-192 (193)
36 cd04399 RhoGAP_fRGD2 RhoGAP_fR 100.0 3.7E-35 8.1E-40 305.6 17.6 188 230-437 1-210 (212)
37 cd04389 RhoGAP_KIAA1688 RhoGAP 100.0 4E-35 8.7E-40 299.9 17.0 178 230-430 1-187 (187)
38 cd04388 RhoGAP_p85 RhoGAP_p85: 100.0 1.6E-34 3.6E-39 297.2 15.9 174 236-431 7-184 (200)
39 KOG1450 Predicted Rho GTPase-a 100.0 1.2E-31 2.5E-36 308.9 21.9 316 100-436 271-649 (650)
40 KOG4270 GTPase-activator prote 100.0 7.4E-30 1.6E-34 293.5 29.0 198 225-438 142-346 (577)
41 smart00324 RhoGAP GTPase-activ 100.0 1.1E-30 2.4E-35 262.3 18.4 169 243-430 2-173 (174)
42 KOG1117 Rho- and Arf-GTPase ac 100.0 2.3E-31 4.9E-36 305.9 14.7 266 99-436 628-897 (1186)
43 KOG2200 Tumour suppressor prot 100.0 3.3E-30 7.2E-35 289.3 15.0 206 226-436 297-511 (674)
44 cd04380 RhoGAP_OCRL1 RhoGAP_OC 100.0 1.2E-29 2.6E-34 265.7 16.7 142 243-390 49-195 (220)
45 cd00159 RhoGAP RhoGAP: GTPase- 100.0 4.2E-29 9.1E-34 247.7 17.9 167 245-430 1-169 (169)
46 KOG4269 Rac GTPase-activating 100.0 2.4E-29 5.2E-34 290.9 13.6 185 225-442 895-1090(1112)
47 PF00620 RhoGAP: RhoGAP domain 99.9 2.9E-28 6.4E-33 238.5 9.9 144 245-389 1-147 (151)
48 KOG4406 CDC42 Rho GTPase-activ 99.9 1.1E-27 2.3E-32 261.5 11.7 196 224-438 248-448 (467)
49 KOG2710 Rho GTPase-activating 99.9 2.9E-26 6.3E-31 255.2 14.6 199 227-436 64-292 (412)
50 KOG4724 Predicted Rho GTPase-a 99.9 4.7E-25 1E-29 250.7 6.6 239 224-484 77-316 (741)
51 KOG1453 Chimaerin and related 99.9 5.4E-24 1.2E-28 261.3 15.7 161 229-390 602-771 (918)
52 KOG3564 GTPase-activating prot 99.9 2.7E-23 5.9E-28 228.9 15.0 174 242-432 360-535 (604)
53 PF14389 Lzipper-MIP1: Leucine 99.9 6.5E-22 1.4E-26 179.0 9.4 87 680-766 1-88 (88)
54 KOG4271 Rho-GTPase activating 99.8 1.1E-18 2.4E-23 204.2 9.2 158 227-385 915-1075(1100)
55 KOG1452 Predicted Rho GTPase-a 99.7 1.2E-17 2.6E-22 177.1 10.5 166 224-390 179-353 (442)
56 cd04405 RhoGAP_BRCC3-like RhoG 99.6 3.8E-15 8.2E-20 155.2 12.0 181 228-436 20-229 (235)
57 cd01251 PH_centaurin_alpha Cen 99.6 4.3E-15 9.2E-20 138.4 10.6 97 86-190 1-101 (103)
58 cd01233 Unc104 Unc-104 pleckst 99.6 5.5E-15 1.2E-19 136.8 10.3 97 84-189 2-98 (100)
59 cd01260 PH_CNK Connector enhan 99.6 1.8E-14 4E-19 131.7 10.4 93 86-188 2-96 (96)
60 cd04401 RhoGAP_fMSB1 RhoGAP_fM 99.5 3.4E-14 7.4E-19 146.4 11.5 144 246-390 8-166 (198)
61 cd01265 PH_PARIS-1 PARIS-1 ple 99.5 5.1E-14 1.1E-18 129.3 9.6 90 87-188 2-93 (95)
62 cd01238 PH_Tec Tec pleckstrin 99.5 4.7E-14 1E-18 132.1 9.5 98 85-188 1-106 (106)
63 cd01252 PH_cytohesin Cytohesin 99.5 2.6E-13 5.7E-18 130.3 11.0 98 86-193 2-117 (125)
64 cd01264 PH_melted Melted pleck 99.5 2E-13 4.3E-18 126.8 9.3 91 86-189 2-101 (101)
65 cd01247 PH_GPBP Goodpasture an 99.4 6.1E-13 1.3E-17 121.4 10.7 90 86-187 1-90 (91)
66 cd01250 PH_centaurin Centaurin 99.4 6.5E-13 1.4E-17 119.4 10.3 93 86-187 1-93 (94)
67 cd01257 PH_IRS Insulin recepto 99.4 9.9E-13 2.2E-17 122.3 10.6 92 84-187 2-100 (101)
68 cd01236 PH_outspread Outspread 99.4 8.9E-13 1.9E-17 123.2 8.5 92 86-186 1-101 (104)
69 cd01235 PH_SETbf Set binding f 99.4 1.5E-12 3.2E-17 119.6 9.9 95 86-189 1-101 (101)
70 cd01246 PH_oxysterol_bp Oxyste 99.3 5.4E-12 1.2E-16 112.8 10.5 91 86-188 1-91 (91)
71 cd01253 PH_beta_spectrin Beta- 99.3 4E-12 8.6E-17 117.9 9.8 98 86-188 1-104 (104)
72 cd01266 PH_Gab Gab (Grb2-assoc 99.3 5.4E-12 1.2E-16 118.4 10.0 95 87-188 2-107 (108)
73 cd01241 PH_Akt Akt pleckstrin 99.3 8.2E-12 1.8E-16 116.2 11.1 97 84-188 1-101 (102)
74 PF00169 PH: PH domain; Inter 99.3 1.7E-11 3.6E-16 110.0 11.9 101 84-189 1-103 (104)
75 cd01230 PH_EFA6 EFA6 Pleckstri 99.3 1.2E-11 2.5E-16 118.1 10.2 100 86-190 2-112 (117)
76 cd01249 PH_oligophrenin Oligop 99.3 1.1E-11 2.4E-16 115.0 8.9 97 86-187 1-103 (104)
77 KOG4370 Ral-GTPase effector RL 99.2 2.6E-11 5.7E-16 133.6 10.2 143 242-385 69-253 (514)
78 cd01263 PH_anillin Anillin Ple 99.2 3.6E-11 7.8E-16 115.5 9.5 103 85-188 2-122 (122)
79 cd01245 PH_RasGAP_CG5898 RAS G 99.2 3.5E-11 7.7E-16 111.3 8.0 93 86-187 1-97 (98)
80 cd01244 PH_RasGAP_CG9209 RAS_G 99.2 5.2E-11 1.1E-15 110.3 9.1 81 99-188 18-98 (98)
81 KOG0930 Guanine nucleotide exc 99.2 7.6E-11 1.6E-15 124.3 9.1 102 84-194 260-380 (395)
82 KOG3565 Cdc42-interacting prot 99.1 7.4E-11 1.6E-15 140.1 8.4 146 242-389 216-366 (640)
83 PF15410 PH_9: Pleckstrin homo 99.1 1.3E-10 2.7E-15 111.2 7.5 99 86-189 2-118 (119)
84 cd01237 Unc112 Unc-112 pleckst 99.1 2.9E-10 6.3E-15 106.0 9.2 92 93-189 11-103 (106)
85 PF15413 PH_11: Pleckstrin hom 99.0 8.8E-10 1.9E-14 104.4 9.3 98 86-188 1-112 (112)
86 cd01219 PH_FGD FGD (faciogenit 99.0 3.4E-09 7.4E-14 98.5 10.7 98 84-190 2-100 (101)
87 smart00233 PH Pleckstrin homol 98.9 9.8E-09 2.1E-13 90.2 11.4 100 85-189 2-101 (102)
88 cd01254 PH_PLD Phospholipase D 98.9 5.7E-09 1.2E-13 100.2 10.1 82 101-188 32-121 (121)
89 PF15409 PH_8: Pleckstrin homo 98.9 5.1E-09 1.1E-13 95.2 8.6 86 88-188 1-88 (89)
90 KOG0521 Putative GTPase activa 98.8 9.3E-10 2E-14 133.7 -0.8 166 5-191 204-370 (785)
91 cd00821 PH Pleckstrin homology 98.7 4.7E-08 1E-12 85.1 8.7 95 86-187 1-95 (96)
92 cd00900 PH-like Pleckstrin hom 98.7 1.4E-07 3.1E-12 82.7 10.4 96 87-188 2-99 (99)
93 cd01256 PH_dynamin Dynamin ple 98.6 1.5E-07 3.2E-12 86.2 9.3 99 84-188 1-104 (110)
94 cd01234 PH_CADPS CADPS (Ca2+-d 98.6 4.3E-08 9.2E-13 90.4 5.8 99 85-192 3-113 (117)
95 cd01220 PH_CDEP Chondrocyte-de 98.6 3.9E-07 8.4E-12 84.8 10.1 97 84-190 2-98 (99)
96 KOG4724 Predicted Rho GTPase-a 98.5 1.2E-07 2.6E-12 110.1 5.1 167 223-389 410-589 (741)
97 cd01259 PH_Apbb1ip Apbb1ip (Am 98.3 1.4E-06 3.1E-11 81.9 7.3 101 86-189 2-108 (114)
98 cd01243 PH_MRCK MRCK (myotonic 98.2 1E-05 2.2E-10 77.2 11.0 104 85-188 3-118 (122)
99 PF08101 DUF1708: Domain of un 98.2 7.9E-06 1.7E-10 93.5 11.8 145 245-390 9-168 (420)
100 KOG0690 Serine/threonine prote 98.1 2.2E-06 4.7E-11 93.5 5.0 100 84-190 15-117 (516)
101 cd01242 PH_ROK Rok (Rho- assoc 98.1 2.1E-05 4.6E-10 74.0 10.6 102 86-189 2-110 (112)
102 KOG3640 Actin binding protein 98.0 9.3E-06 2E-10 97.6 6.4 108 82-190 988-1107(1116)
103 cd01218 PH_phafin2 Phafin2 Pl 97.7 0.00022 4.8E-09 67.1 10.2 97 83-190 3-99 (104)
104 KOG3751 Growth factor receptor 97.7 7.4E-05 1.6E-09 85.6 8.0 107 81-189 314-424 (622)
105 KOG0932 Guanine nucleotide exc 97.6 3.7E-05 8E-10 88.4 3.6 102 83-189 505-617 (774)
106 KOG1090 Predicted dual-specifi 97.6 3.2E-05 7E-10 93.0 3.1 96 84-189 1634-1731(1732)
107 KOG2059 Ras GTPase-activating 97.4 0.00028 6.2E-09 83.4 8.0 98 84-191 565-666 (800)
108 PF14593 PH_3: PH domain; PDB: 97.4 0.001 2.2E-08 62.7 10.1 87 83-189 12-99 (104)
109 cd01261 PH_SOS Son of Sevenles 97.4 0.0014 2.9E-08 62.6 10.4 101 83-190 3-110 (112)
110 PLN00188 enhanced disease resi 97.2 0.0013 2.8E-08 79.1 10.3 103 83-192 3-112 (719)
111 PTZ00267 NIMA-related protein 97.2 0.00087 1.9E-08 78.3 7.9 100 82-190 375-477 (478)
112 cd01239 PH_PKD Protein kinase 97.1 0.0011 2.3E-08 63.1 6.8 80 85-173 1-82 (117)
113 cd01258 PH_syntrophin Syntroph 97.1 0.0012 2.5E-08 62.6 6.8 99 88-187 3-107 (108)
114 KOG3543 Ca2+-dependent activat 97.0 0.00016 3.6E-09 83.6 0.1 101 83-192 463-568 (1218)
115 PF15408 PH_7: Pleckstrin homo 96.3 0.0018 3.9E-08 58.3 1.6 93 87-189 1-97 (104)
116 cd01222 PH_clg Clg (common-sit 96.3 0.037 8E-07 51.6 10.0 92 84-189 4-95 (97)
117 cd01240 PH_beta-ARK Beta adren 96.2 0.0061 1.3E-07 57.4 4.6 95 84-189 3-98 (116)
118 KOG1453 Chimaerin and related 96.1 0.0027 5.8E-08 80.0 2.5 160 229-389 462-668 (918)
119 KOG0517 Beta-spectrin [Cytoske 95.7 0.00024 5.3E-09 90.2 -9.2 102 84-190 2299-2410(2473)
120 PF12814 Mcp5_PH: Meiotic cell 95.6 0.13 2.8E-06 49.8 10.9 100 88-190 13-122 (123)
121 KOG3531 Rho guanine nucleotide 95.5 0.007 1.5E-07 73.0 2.5 95 85-189 925-1019(1036)
122 PLN02866 phospholipase D 95.5 0.066 1.4E-06 67.3 10.7 103 84-191 182-309 (1068)
123 cd01224 PH_Collybistin Collybi 95.3 0.17 3.6E-06 48.2 10.4 100 84-187 2-105 (109)
124 PTZ00283 serine/threonine prot 95.2 0.045 9.6E-07 64.7 7.9 37 152-190 454-490 (496)
125 KOG0248 Cytoplasmic protein Ma 95.1 0.012 2.7E-07 69.6 2.6 94 84-190 249-342 (936)
126 KOG3723 PH domain protein Melt 95.0 0.015 3.2E-07 67.8 2.8 94 84-190 735-837 (851)
127 KOG0705 GTPase-activating prot 94.8 0.0095 2.1E-07 69.5 0.6 35 154-190 446-480 (749)
128 cd01221 PH_ephexin Ephexin Ple 94.4 0.38 8.2E-06 47.0 10.4 97 84-186 3-119 (125)
129 cd01232 PH_TRIO Trio pleckstri 94.2 0.65 1.4E-05 44.7 11.4 102 84-190 5-113 (114)
130 PF15404 PH_4: Pleckstrin homo 94.1 0.28 6.2E-06 50.9 9.5 32 86-119 1-32 (185)
131 KOG1117 Rho- and Arf-GTPase ac 93.8 0.11 2.3E-06 63.4 6.4 102 84-189 492-601 (1186)
132 KOG1739 Serine/threonine prote 93.8 0.072 1.6E-06 61.3 4.8 93 83-188 23-115 (611)
133 cd01262 PH_PDK1 3-Phosphoinosi 93.3 0.56 1.2E-05 43.2 8.8 86 85-188 2-87 (89)
134 cd01223 PH_Vav Vav pleckstrin 93.1 0.46 1E-05 45.8 8.3 83 103-190 21-112 (116)
135 KOG1449 Predicted Rho GTPase-a 92.8 0.02 4.3E-07 67.0 -1.6 73 357-438 1-73 (670)
136 KOG0804 Cytoplasmic Zn-finger 92.5 0.52 1.1E-05 54.3 9.1 108 651-765 347-454 (493)
137 KOG1449 Predicted Rho GTPase-a 92.5 0.042 9.1E-07 64.4 0.5 140 227-390 207-355 (670)
138 KOG4424 Predicted Rho/Rac guan 92.2 0.15 3.2E-06 60.2 4.4 101 81-190 269-370 (623)
139 cd01231 PH_Lnk LNK-family Plec 91.7 0.68 1.5E-05 43.5 7.3 37 149-187 70-106 (107)
140 cd01228 PH_BCR-related BCR (br 91.4 0.7 1.5E-05 43.0 6.9 88 84-188 3-93 (96)
141 cd01227 PH_Dbs Dbs (DBL's big 90.7 3.2 6.8E-05 41.1 11.4 82 103-190 30-116 (133)
142 COG1579 Zn-ribbon protein, pos 89.3 4.5 9.8E-05 43.8 12.1 106 648-761 10-118 (239)
143 PF12240 Angiomotin_C: Angiomo 88.4 1.2 2.5E-05 46.8 6.6 73 672-755 13-87 (205)
144 PF15405 PH_5: Pleckstrin homo 88.4 1 2.2E-05 44.5 6.1 37 152-188 98-134 (135)
145 cd01226 PH_exo84 Exocyst compl 87.9 3.4 7.5E-05 38.9 8.8 79 103-189 20-98 (100)
146 cd00089 HR1 Protein kinase C-r 87.8 1.7 3.7E-05 38.1 6.5 65 688-764 3-67 (72)
147 PF10186 Atg14: UV radiation r 87.6 3.1 6.8E-05 45.3 9.9 115 647-764 26-144 (302)
148 cd01225 PH_Cool_Pix Cool (clon 86.9 2.7 5.9E-05 40.2 7.6 82 102-189 28-109 (111)
149 KOG1737 Oxysterol-binding prot 86.4 0.51 1.1E-05 58.4 3.2 91 84-188 77-167 (799)
150 PF09726 Macoilin: Transmembra 83.3 53 0.0012 41.0 18.4 47 669-715 467-523 (697)
151 PF15406 PH_6: Pleckstrin homo 83.1 1.9 4.1E-05 41.1 4.6 29 156-187 83-111 (112)
152 KOG3549 Syntrophins (type gamm 82.8 2.4 5.3E-05 47.5 6.0 106 81-190 278-387 (505)
153 KOG4807 F-actin binding protei 78.2 0.045 9.7E-07 61.4 -9.1 118 650-772 420-546 (593)
154 PF00038 Filament: Intermediat 78.0 10 0.00022 42.0 9.1 93 651-763 50-152 (312)
155 PF12240 Angiomotin_C: Angiomo 76.6 31 0.00068 36.5 11.4 110 649-764 18-154 (205)
156 KOG2391 Vacuolar sorting prote 75.5 6.2 0.00013 44.4 6.4 51 653-703 212-262 (365)
157 KOG3727 Mitogen inducible gene 75.0 0.41 8.9E-06 56.3 -2.9 87 99-189 372-458 (664)
158 KOG0995 Centromere-associated 74.8 34 0.00073 41.2 12.4 102 647-765 220-327 (581)
159 PF07820 TraC: TraC-like prote 74.4 8.1 0.00017 35.8 5.8 30 689-718 4-39 (92)
160 KOG1738 Membrane-associated gu 74.0 0.65 1.4E-05 55.5 -1.6 55 84-142 562-617 (638)
161 KOG4047 Docking protein 1 (p62 73.5 1.6 3.4E-05 50.8 1.3 30 84-113 8-37 (429)
162 PRK09039 hypothetical protein; 70.6 25 0.00053 40.2 9.9 32 733-764 124-155 (343)
163 PF10168 Nup88: Nuclear pore c 69.2 88 0.0019 39.3 15.0 109 649-767 552-667 (717)
164 PRK10884 SH3 domain-containing 67.9 40 0.00088 35.8 10.2 32 733-764 140-171 (206)
165 KOG3551 Syntrophins (type beta 67.2 4 8.6E-05 46.6 2.6 107 83-189 291-401 (506)
166 PF10186 Atg14: UV radiation r 67.0 59 0.0013 35.3 11.8 37 736-772 123-159 (302)
167 KOG0977 Nuclear envelope prote 65.2 50 0.0011 39.9 11.3 70 646-715 111-204 (546)
168 PRK13848 conjugal transfer pro 64.3 17 0.00036 33.8 5.6 45 691-742 7-57 (98)
169 PRK11637 AmiB activator; Provi 64.0 37 0.00081 39.6 10.0 35 737-771 101-135 (428)
170 PF15411 PH_10: Pleckstrin hom 63.9 64 0.0014 31.2 9.9 97 85-185 8-116 (116)
171 PF07888 CALCOCO1: Calcium bin 63.4 27 0.00058 42.1 8.6 50 689-738 278-327 (546)
172 TIGR01000 bacteriocin_acc bact 62.6 75 0.0016 37.5 12.2 44 675-718 160-203 (457)
173 PF05911 DUF869: Plant protein 62.6 39 0.00085 42.6 10.2 72 690-771 627-698 (769)
174 KOG4424 Predicted Rho/Rac guan 62.5 10 0.00022 45.4 4.9 94 86-189 499-595 (623)
175 TIGR01843 type_I_hlyD type I s 61.4 67 0.0014 36.6 11.3 22 741-762 212-233 (423)
176 KOG1029 Endocytic adaptor prot 61.0 1.3E+02 0.0027 37.9 13.4 118 664-803 363-492 (1118)
177 KOG2129 Uncharacterized conser 60.8 29 0.00064 40.1 7.9 70 650-719 210-317 (552)
178 PF04931 DNA_pol_phi: DNA poly 60.8 8.1 0.00018 48.7 4.0 12 295-306 476-487 (784)
179 KOG4140 Nuclear protein Ataxin 60.4 48 0.001 39.2 9.5 41 664-713 273-314 (659)
180 cd05394 RasGAP_RASA2 RASA2 (or 59.7 2.2 4.8E-05 47.8 -1.0 28 83-110 282-312 (313)
181 cd05134 RasGAP_RASA3 RASA3 (or 58.7 2.9 6.4E-05 46.9 -0.3 29 83-111 279-310 (310)
182 PF07926 TPR_MLP1_2: TPR/MLP1/ 57.3 2E+02 0.0043 28.2 12.4 28 735-762 101-128 (132)
183 COG2433 Uncharacterized conser 57.1 92 0.002 38.0 11.4 77 669-770 436-512 (652)
184 cd05128 RasGAP_GAP1_like The G 56.8 3.8 8.1E-05 46.2 0.2 28 83-110 285-315 (315)
185 PF07798 DUF1640: Protein of u 56.8 73 0.0016 32.8 9.6 82 680-764 73-156 (177)
186 PRK09039 hypothetical protein; 56.7 1.1E+02 0.0024 34.9 11.9 21 696-716 139-159 (343)
187 PF12325 TMF_TATA_bd: TATA ele 56.1 1E+02 0.0022 30.2 9.7 76 650-757 39-114 (120)
188 PF14362 DUF4407: Domain of un 55.9 2E+02 0.0043 31.9 13.5 89 674-767 129-217 (301)
189 KOG2077 JNK/SAPK-associated pr 55.8 91 0.002 37.7 10.9 99 652-762 319-422 (832)
190 PLN02372 violaxanthin de-epoxi 55.7 28 0.00061 40.4 6.7 27 642-668 355-381 (455)
191 KOG1118 Lysophosphatidic acid 55.4 1.1E+02 0.0025 34.4 11.0 119 636-767 96-223 (366)
192 PF08317 Spc7: Spc7 kinetochor 55.0 1.2E+02 0.0025 34.4 11.6 21 684-704 181-201 (325)
193 PF05700 BCAS2: Breast carcino 54.9 2.4E+02 0.0052 30.1 13.4 101 645-764 98-214 (221)
194 cd01248 PH_PLC Phospholipase C 54.9 60 0.0013 30.8 8.0 36 151-187 77-114 (115)
195 PF07106 TBPIP: Tat binding pr 54.8 41 0.00088 34.2 7.2 62 690-759 75-136 (169)
196 PF08317 Spc7: Spc7 kinetochor 54.4 68 0.0015 36.2 9.6 99 668-766 127-243 (325)
197 KOG0996 Structural maintenance 53.9 2.5E+02 0.0053 37.1 14.8 80 675-762 808-894 (1293)
198 COG1579 Zn-ribbon protein, pos 53.9 2.2E+02 0.0048 31.1 12.8 41 671-711 87-127 (239)
199 PF09726 Macoilin: Transmembra 53.2 3.5E+02 0.0076 34.1 16.1 31 736-766 485-515 (697)
200 PRK11637 AmiB activator; Provi 53.0 1.8E+02 0.004 34.0 13.2 21 739-759 233-253 (428)
201 PF06637 PV-1: PV-1 protein (P 52.1 1.7E+02 0.0036 34.0 11.8 92 652-766 282-376 (442)
202 PF06705 SF-assemblin: SF-asse 51.7 1.3E+02 0.0028 32.5 10.9 43 669-711 45-87 (247)
203 cd05135 RasGAP_RASAL Ras GTPas 50.9 5.1 0.00011 45.4 0.0 28 83-110 302-333 (333)
204 PF09486 HrpB7: Bacterial type 50.8 1.6E+02 0.0034 30.3 10.5 98 668-768 14-115 (158)
205 KOG4674 Uncharacterized conser 50.7 43 0.00092 45.6 8.1 100 673-772 791-893 (1822)
206 PF02185 HR1: Hr1 repeat; Int 50.5 39 0.00084 29.4 5.4 62 694-768 1-62 (70)
207 PF00038 Filament: Intermediat 49.2 2.4E+02 0.0053 31.1 12.9 66 647-712 74-142 (312)
208 PF13870 DUF4201: Domain of un 49.0 1.2E+02 0.0027 31.0 9.7 29 736-764 149-177 (177)
209 smart00787 Spc7 Spc7 kinetocho 48.5 2E+02 0.0042 32.6 11.9 31 646-676 146-176 (312)
210 PRK11519 tyrosine kinase; Prov 48.4 1.6E+02 0.0035 37.0 12.4 90 660-759 241-331 (719)
211 PHA02562 46 endonuclease subun 48.0 1.3E+02 0.0027 36.1 11.1 37 741-780 257-293 (562)
212 PF03938 OmpH: Outer membrane 47.6 1.3E+02 0.0027 29.9 9.4 80 667-768 30-109 (158)
213 PRK12704 phosphodiesterase; Pr 46.7 1.5E+02 0.0033 35.9 11.4 36 740-775 118-153 (520)
214 PF11559 ADIP: Afadin- and alp 46.6 2.4E+02 0.0051 28.0 11.1 26 736-761 98-123 (151)
215 PF12128 DUF3584: Protein of u 46.5 1.3E+02 0.0027 40.2 11.6 74 98-188 54-133 (1201)
216 cd01255 PH_TIAM TIAM Pleckstri 45.8 1E+02 0.0023 31.1 8.1 41 150-190 110-155 (160)
217 PF11180 DUF2968: Protein of u 45.8 1.6E+02 0.0034 31.1 9.8 85 644-763 101-185 (192)
218 PF09755 DUF2046: Uncharacteri 45.7 2.5E+02 0.0054 31.8 11.9 69 696-765 180-248 (310)
219 TIGR03185 DNA_S_dndD DNA sulfu 45.7 1.6E+02 0.0034 36.5 11.7 102 650-764 184-287 (650)
220 TIGR03319 YmdA_YtgF conserved 45.6 1.4E+02 0.003 36.1 10.8 36 740-775 112-147 (514)
221 PF08826 DMPK_coil: DMPK coile 45.5 86 0.0019 27.2 6.6 29 677-705 29-57 (61)
222 KOG1029 Endocytic adaptor prot 45.5 1E+02 0.0022 38.7 9.4 31 740-770 394-433 (1118)
223 PF11083 Streptin-Immun: Lanti 45.1 74 0.0016 30.1 6.6 60 650-709 1-74 (99)
224 KOG0971 Microtubule-associated 45.1 1.3E+02 0.0027 38.5 10.2 114 652-773 428-552 (1243)
225 PF10506 MCC-bdg_PDZ: PDZ doma 44.7 57 0.0012 28.7 5.5 25 659-683 2-26 (67)
226 cd07596 BAR_SNX The Bin/Amphip 43.9 1.4E+02 0.003 30.6 9.3 76 676-769 107-182 (218)
227 TIGR02890 spore_yteA sporulati 43.5 2.1E+02 0.0045 29.4 10.1 91 679-781 4-96 (159)
228 PF15619 Lebercilin: Ciliary p 42.8 3.9E+02 0.0085 28.2 12.4 114 648-762 12-148 (194)
229 KOG3523 Putative guanine nucle 42.6 42 0.00091 40.7 5.7 88 99-186 496-591 (695)
230 PF09744 Jnk-SapK_ap_N: JNK_SA 42.2 66 0.0014 32.9 6.4 66 691-762 54-119 (158)
231 PF06524 NOA36: NOA36 protein; 42.1 32 0.0007 37.6 4.3 10 179-188 104-113 (314)
232 PF00769 ERM: Ezrin/radixin/mo 41.6 4.2E+02 0.0091 28.9 12.9 39 729-767 79-117 (246)
233 PRK02224 chromosome segregatio 41.5 2E+02 0.0043 36.7 12.0 27 737-763 590-616 (880)
234 PF15619 Lebercilin: Ciliary p 40.9 3.1E+02 0.0068 28.9 11.3 118 647-773 46-166 (194)
235 PF05557 MAD: Mitotic checkpoi 40.9 22 0.00047 44.4 3.3 81 684-764 451-535 (722)
236 COG5185 HEC1 Protein involved 40.5 2.9E+02 0.0062 33.0 11.6 39 728-766 326-364 (622)
237 KOG0161 Myosin class II heavy 40.5 2.3E+02 0.0049 39.6 12.5 80 684-763 1010-1093(1930)
238 PF07321 YscO: Type III secret 40.3 2.7E+02 0.0059 28.3 10.4 74 674-768 30-103 (152)
239 TIGR02231 conserved hypothetic 40.3 1.8E+02 0.0039 34.9 10.8 35 730-764 136-170 (525)
240 KOG0161 Myosin class II heavy 40.0 2.1E+02 0.0045 39.9 12.0 75 684-768 1291-1365(1930)
241 KOG2910 Uncharacterized conser 39.1 3E+02 0.0066 29.1 10.5 28 741-768 72-99 (209)
242 TIGR02168 SMC_prok_B chromosom 38.6 2.2E+02 0.0049 36.9 12.0 23 741-763 917-939 (1179)
243 TIGR02169 SMC_prok_A chromosom 38.4 2.5E+02 0.0055 36.5 12.5 21 741-761 478-498 (1164)
244 PRK09841 cryptic autophosphory 38.0 2E+02 0.0043 36.2 11.0 80 671-759 251-331 (726)
245 TIGR03007 pepcterm_ChnLen poly 38.0 6.2E+02 0.013 30.0 14.7 50 734-784 312-361 (498)
246 COG5406 Nucleosome binding fac 37.9 35 0.00076 41.4 4.1 20 117-136 535-554 (1001)
247 PF06785 UPF0242: Uncharacteri 37.9 3.1E+02 0.0066 31.4 11.0 89 665-770 137-225 (401)
248 TIGR01010 BexC_CtrB_KpsE polys 37.6 2.2E+02 0.0049 32.3 10.5 38 674-711 156-195 (362)
249 TIGR02168 SMC_prok_B chromosom 37.3 2.6E+02 0.0056 36.3 12.3 19 743-761 912-930 (1179)
250 KOG4236 Serine/threonine prote 37.2 41 0.00089 40.5 4.5 102 82-190 411-524 (888)
251 PHA02562 46 endonuclease subun 37.0 2.7E+02 0.0059 33.3 11.6 58 647-705 298-355 (562)
252 TIGR01000 bacteriocin_acc bact 36.8 3.6E+02 0.0078 31.8 12.4 25 740-764 237-261 (457)
253 PF08614 ATG16: Autophagy prot 36.6 3.3E+02 0.0072 28.3 10.8 96 652-764 85-183 (194)
254 COG0419 SbcC ATPase involved i 36.5 3.5E+02 0.0075 35.0 13.0 78 694-781 382-467 (908)
255 KOG0612 Rho-associated, coiled 35.8 2.1E+02 0.0045 37.8 10.4 77 685-776 747-823 (1317)
256 PRK04863 mukB cell division pr 35.7 3.5E+02 0.0076 37.1 13.1 29 740-768 450-478 (1486)
257 PF05266 DUF724: Protein of un 35.0 3.7E+02 0.0081 28.3 10.8 53 685-761 129-181 (190)
258 COG1196 Smc Chromosome segrega 35.0 3.3E+02 0.0071 36.3 12.7 16 165-180 144-159 (1163)
259 PF04714 BCL_N: BCL7, N-termin 34.8 17 0.00036 30.2 0.7 20 99-118 27-46 (52)
260 PRK00106 hypothetical protein; 34.3 1.4E+02 0.003 36.3 8.4 36 740-775 133-168 (535)
261 PF04931 DNA_pol_phi: DNA poly 34.3 42 0.00091 42.4 4.4 9 176-184 301-309 (784)
262 PF05508 Ran-binding: RanGTP-b 33.9 2E+02 0.0043 32.5 8.9 106 651-782 45-165 (302)
263 PF03962 Mnd1: Mnd1 family; I 33.4 1.7E+02 0.0038 30.6 8.0 24 733-756 104-127 (188)
264 PF14197 Cep57_CLD_2: Centroso 33.3 2.3E+02 0.0049 25.1 7.5 27 740-766 41-67 (69)
265 PRK02224 chromosome segregatio 33.3 2E+02 0.0044 36.6 10.2 15 173-187 109-123 (880)
266 TIGR03752 conj_TIGR03752 integ 33.2 1.8E+02 0.004 34.6 8.9 57 658-714 69-136 (472)
267 smart00787 Spc7 Spc7 kinetocho 32.8 2.9E+02 0.0063 31.3 10.2 18 684-701 176-193 (312)
268 KOG1899 LAR transmembrane tyro 32.5 5.1E+02 0.011 32.1 12.3 68 641-715 101-174 (861)
269 KOG3520 Predicted guanine nucl 32.3 58 0.0013 42.5 5.0 45 150-194 682-726 (1167)
270 TIGR01005 eps_transp_fam exopo 32.0 1.9E+02 0.004 36.4 9.4 21 646-666 286-306 (754)
271 TIGR02420 dksA RNA polymerase- 31.9 3.8E+02 0.0083 25.4 9.4 35 746-781 56-90 (110)
272 PF05565 Sipho_Gp157: Siphovir 31.2 2.2E+02 0.0048 29.0 8.2 66 644-709 22-90 (162)
273 TIGR01843 type_I_hlyD type I s 31.2 3.3E+02 0.0072 31.0 10.7 20 743-762 207-226 (423)
274 KOG4095 Uncharacterized conser 31.1 20 0.00043 36.0 0.6 22 99-120 28-49 (165)
275 PF10146 zf-C4H2: Zinc finger- 30.8 2.6E+02 0.0056 30.4 9.0 67 689-765 41-108 (230)
276 TIGR03319 YmdA_YtgF conserved 30.7 4.4E+02 0.0095 31.9 11.8 14 734-747 134-147 (514)
277 TIGR03007 pepcterm_ChnLen poly 30.4 3.4E+02 0.0075 32.1 10.9 90 670-763 140-235 (498)
278 KOG4593 Mitotic checkpoint pro 29.7 6.4E+02 0.014 31.6 12.8 113 649-762 249-393 (716)
279 PF04156 IncA: IncA protein; 29.6 6.2E+02 0.014 25.8 12.0 94 647-764 94-190 (191)
280 PLN02678 seryl-tRNA synthetase 29.1 1.3E+02 0.0028 35.8 6.9 30 735-764 74-103 (448)
281 PRK13729 conjugal transfer pil 29.1 1E+02 0.0023 36.7 6.1 58 639-703 57-120 (475)
282 PRK00409 recombination and DNA 29.1 4.1E+02 0.0089 33.9 11.7 58 645-706 517-574 (782)
283 KOG0248 Cytoplasmic protein Ma 29.0 55 0.0012 40.3 3.8 102 84-190 358-466 (936)
284 PF12128 DUF3584: Protein of u 28.6 6E+02 0.013 34.0 13.6 46 675-720 836-881 (1201)
285 PF14282 FlxA: FlxA-like prote 28.6 2E+02 0.0044 27.3 6.9 59 691-769 23-81 (106)
286 KOG1937 Uncharacterized conser 28.4 3.2E+02 0.0069 32.5 9.5 40 665-705 237-279 (521)
287 KOG1937 Uncharacterized conser 28.3 5.1E+02 0.011 30.9 11.1 127 638-765 283-422 (521)
288 PF11559 ADIP: Afadin- and alp 28.1 6E+02 0.013 25.2 11.2 20 744-763 131-150 (151)
289 TIGR00606 rad50 rad50. This fa 28.0 4.1E+02 0.0089 35.9 12.1 22 25-46 4-27 (1311)
290 PF15175 SPATA24: Spermatogene 27.8 92 0.002 31.5 4.5 81 695-779 39-127 (153)
291 KOG3433 Protein involved in me 27.8 1.5E+02 0.0033 31.0 6.2 63 649-714 75-140 (203)
292 PF06698 DUF1192: Protein of u 27.6 1.4E+02 0.0031 25.7 5.0 32 684-715 25-56 (59)
293 PRK10361 DNA recombination pro 27.1 9.1E+02 0.02 29.1 13.3 45 659-703 71-115 (475)
294 PRK11546 zraP zinc resistance 27.1 3.4E+02 0.0074 27.4 8.4 67 684-768 51-118 (143)
295 PF02403 Seryl_tRNA_N: Seryl-t 27.0 2E+02 0.0044 26.8 6.7 33 732-764 67-99 (108)
296 KOG1060 Vesicle coat complex A 26.9 5.5E+02 0.012 32.8 11.6 131 230-364 323-479 (968)
297 PRK03918 chromosome segregatio 26.8 5.7E+02 0.012 32.5 12.7 15 370-384 10-24 (880)
298 PRK10884 SH3 domain-containing 26.7 3E+02 0.0065 29.4 8.5 53 649-705 94-150 (206)
299 COG1842 PspA Phage shock prote 26.7 8.4E+02 0.018 26.4 12.5 22 681-702 53-74 (225)
300 COG1196 Smc Chromosome segrega 26.6 5.5E+02 0.012 34.2 12.7 57 649-705 296-362 (1163)
301 PF14817 HAUS5: HAUS augmin-li 26.4 1.3E+02 0.0027 37.4 6.4 41 665-705 52-97 (632)
302 PRK12705 hypothetical protein; 26.1 2.2E+02 0.0049 34.4 8.2 23 683-705 59-81 (508)
303 PRK11281 hypothetical protein; 25.9 3.3E+02 0.0072 36.2 10.2 117 648-771 73-217 (1113)
304 PF15070 GOLGA2L5: Putative go 25.6 4.3E+02 0.0094 32.8 10.7 52 649-704 88-139 (617)
305 PF07888 CALCOCO1: Calcium bin 25.5 7.4E+02 0.016 30.3 12.3 16 740-755 221-236 (546)
306 TIGR02559 HrpB7 type III secre 25.5 7.4E+02 0.016 25.5 10.5 99 664-767 10-114 (158)
307 PHA03187 UL14 tegument protein 25.4 2E+02 0.0043 32.1 6.9 81 685-768 7-87 (322)
308 KOG0993 Rab5 GTPase effector R 25.3 4.1E+02 0.0089 31.2 9.6 51 694-761 441-491 (542)
309 KOG2051 Nonsense-mediated mRNA 25.3 1.7E+03 0.037 29.5 16.6 76 292-371 680-763 (1128)
310 KOG1264 Phospholipase C [Lipid 25.0 62 0.0013 40.6 3.3 31 84-116 475-505 (1267)
311 TIGR03794 NHPM_micro_HlyD NHPM 24.9 5.4E+02 0.012 29.9 11.0 25 739-763 227-251 (421)
312 COG4372 Uncharacterized protei 24.6 5E+02 0.011 30.4 10.0 30 825-854 349-378 (499)
313 PF13851 GAS: Growth-arrest sp 24.0 6.3E+02 0.014 26.7 10.3 102 649-761 28-129 (201)
314 KOG4270 GTPase-activator prote 23.7 75 0.0016 38.8 3.7 131 245-388 59-196 (577)
315 PF03148 Tektin: Tektin family 23.4 6.3E+02 0.014 29.3 11.1 106 653-765 231-350 (384)
316 TIGR02971 heterocyst_DevB ABC 23.3 7.1E+02 0.015 27.6 11.3 78 668-764 127-204 (327)
317 KOG3915 Transcription regulato 23.1 2.9E+02 0.0064 32.8 8.0 61 653-717 501-565 (641)
318 PF09304 Cortex-I_coil: Cortex 23.1 4.7E+02 0.01 25.3 8.0 26 650-682 4-29 (107)
319 PRK04863 mukB cell division pr 22.9 8.8E+02 0.019 33.5 13.5 13 693-705 354-366 (1486)
320 TIGR01069 mutS2 MutS2 family p 22.9 5.5E+02 0.012 32.8 11.2 56 645-704 512-567 (771)
321 KOG0250 DNA repair protein RAD 22.5 5.3E+02 0.011 33.9 10.7 86 651-767 337-422 (1074)
322 KOG1189 Global transcriptional 22.4 82 0.0018 39.3 3.7 16 423-438 851-866 (960)
323 PRK10929 putative mechanosensi 22.4 6.9E+02 0.015 33.3 12.1 60 646-705 171-233 (1109)
324 PF10267 Tmemb_cc2: Predicted 22.4 1.3E+03 0.028 27.1 14.9 56 692-760 242-297 (395)
325 PF08172 CASP_C: CASP C termin 22.3 3.4E+02 0.0074 29.8 8.1 9 692-700 25-33 (248)
326 KOG0612 Rho-associated, coiled 22.2 6.2E+02 0.014 33.8 11.2 20 748-767 562-581 (1317)
327 KOG0577 Serine/threonine prote 22.2 1.3E+02 0.0027 37.1 5.1 66 693-766 820-885 (948)
328 PF08647 BRE1: BRE1 E3 ubiquit 22.1 4.8E+02 0.01 24.3 8.0 66 649-714 4-79 (96)
329 PF14197 Cep57_CLD_2: Centroso 22.0 3.1E+02 0.0068 24.2 6.3 55 651-705 1-65 (69)
330 PRK15361 pathogenicity island 21.6 96 0.0021 32.5 3.5 51 372-434 1-52 (195)
331 PF02841 GBP_C: Guanylate-bind 21.6 8.1E+02 0.018 27.2 11.2 36 673-708 222-257 (297)
332 PF02841 GBP_C: Guanylate-bind 21.3 6E+02 0.013 28.2 10.0 39 666-704 185-228 (297)
333 PF10234 Cluap1: Clusterin-ass 21.2 2.6E+02 0.0056 31.1 6.9 29 691-719 128-156 (267)
334 KOG0996 Structural maintenance 21.1 6.5E+02 0.014 33.5 11.1 72 650-723 365-441 (1293)
335 PF06005 DUF904: Protein of un 21.0 3.8E+02 0.0083 23.9 6.7 44 659-702 8-54 (72)
336 PF15188 CCDC-167: Coiled-coil 21.0 3E+02 0.0065 25.5 6.1 40 728-773 31-70 (85)
337 PF07439 DUF1515: Protein of u 21.0 4.7E+02 0.01 25.4 7.6 62 685-759 6-67 (112)
338 PF08458 PH_2: Plant pleckstri 21.0 6.5E+02 0.014 24.4 8.7 37 151-190 68-104 (110)
339 TIGR01005 eps_transp_fam exopo 20.9 9.4E+02 0.02 30.2 12.8 80 693-772 236-342 (754)
340 KOG3156 Uncharacterized membra 20.8 6.2E+02 0.014 27.3 9.2 71 691-764 127-199 (220)
341 PF03962 Mnd1: Mnd1 family; I 20.8 2.7E+02 0.0059 29.1 6.8 18 687-704 110-127 (188)
342 PF08549 SWI-SNF_Ssr4: Fungal 20.6 1.9E+02 0.0042 35.8 6.3 58 650-714 354-412 (669)
343 PF11500 Cut12: Spindle pole b 20.4 4.1E+02 0.009 27.1 7.6 65 682-758 72-138 (152)
344 cd04769 HTH_MerR2 Helix-Turn-H 20.3 2.3E+02 0.0049 27.0 5.6 42 676-717 75-116 (116)
345 PF07798 DUF1640: Protein of u 20.2 3.9E+02 0.0085 27.4 7.7 76 672-756 76-155 (177)
346 COG1842 PspA Phage shock prote 20.2 1.1E+03 0.024 25.5 11.6 25 740-764 121-145 (225)
347 KOG0977 Nuclear envelope prote 20.1 6E+02 0.013 31.1 10.1 78 686-766 105-189 (546)
348 PF08581 Tup_N: Tup N-terminal 20.1 3.4E+02 0.0073 24.7 6.2 50 655-704 25-74 (79)
No 1
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=100.00 E-value=3.1e-60 Score=526.24 Aligned_cols=355 Identities=23% Similarity=0.326 Sum_probs=298.0
Q ss_pred ceeecCCchhhHhhhccchhhhcccceecccC-CCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCC
Q 002835 3 IFQIFPPTHSIFAESCNHDAGDLVIGIWSVKA-PNGLRRKNLSGDAGTPPMATNPPGGPPSGQPPGPPPGPNDHRITRAG 81 (875)
Q Consensus 3 ~~~~~~~~~~~~~~df~~y~~~L~~~lq~tR~-~~~tR~~~esl~~~~~km~~~p~~~~~~~~~p~~~~~p~~~~~~~~~ 81 (875)
+|.|||.|- |+++||+||+++||+.|||||+ |++||.++++| +++|+++|.. . +.+
T Consensus 206 lf~f~h~g~-el~qDF~pfk~qlq~s~QnTrn~f~~Tr~E~EeL---kKkmke~p~e----------------~---k~p 262 (812)
T KOG1451|consen 206 LFSFFHVGS-ELHQDFKPFKDQLQTSVQNTRNNFNATRAEAEEL---KKKMKESPTE----------------D---KRP 262 (812)
T ss_pred HHHHhhhhH-HHHhhhhhHHHHHHHHHHHhhhcccchHHHHHHH---HHHHhhCccc----------------c---cCC
Confidence 356666665 9999999999999999999999 99999999999 9999988862 1 112
Q ss_pred CcEEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCC--CCCCccceeecCCeeecCCCceeeecCCcceEEEE
Q 002835 82 NAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAI--PQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLF 159 (875)
Q Consensus 82 ~~v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~--p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~ 159 (875)
.+.+++||||.++|.+..++|.|+||+|.+.+..|..-.-+-+ ...|+...+.|+.|..+..++ ++|+|||++.
T Consensus 263 ~p~t~eGYlY~QEK~~~g~sWvKyYC~Y~retk~~TMvp~~qk~g~k~g~~~~~~lKsC~RRktdS----IdKRFCFDve 338 (812)
T KOG1451|consen 263 TPSTKEGYLYMQEKSKIGKSWVKYYCVYSRETKIFTMVPANQKTGTKMGQTATFKLKSCSRRKTDS----IDKRFCFDVE 338 (812)
T ss_pred CCcccceeeeehhhhhccchhhhheeEeecccceEEEeecccCCCCcCCCcceEEehhhccCcccc----cccceeeeee
Confidence 2368999999999999899999999999999877755433221 223555669999999998754 5999999999
Q ss_pred ecCCCCceeEEEecchhhHHHHHHHHHhhhccCCCCCCCCcccCcccccchhhccCchhhhcccCCCCCccccChhHhhh
Q 002835 160 PDGRDGRAFTLKAESLEDLYDWKTALENALAQAPSTGSATGQNGILKNDKAEAANGSVEQLKEKPVKFPVIGRPILLALE 239 (875)
Q Consensus 160 ~~~~dgrty~fQAdSEeE~~eWI~AI~~ai~~aP~~~~~~~~~~if~~~~~~~~~~s~~~~~~K~~k~~vFGvpLe~ll~ 239 (875)
...++| +.++||.+++++..||.||+++. |.+. .+.+ + +..+ +..+
T Consensus 339 ~~erpg-viTmQALSE~drrlWmeAMDG~e---p~Y~--s~~~-~-------~~~~-------------------~~qL- 384 (812)
T KOG1451|consen 339 VEERPG-VITMQALSEKDRRLWMEAMDGAE---PSYT--SGEN-C-------STYK-------------------QTQL- 384 (812)
T ss_pred ecccCC-eeehHhhhhhHHHHHHHHhcCCC---cccc--Cccc-c-------chhh-------------------hhhh-
Confidence 988886 58999999999999999999985 4432 1111 0 0000 0111
Q ss_pred cCCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCC----CC--CCCCCCchhhHhhHHHHHhhCCCCC
Q 002835 240 DVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGK----TE--FSPEEDAHIIADCVKYVIRELPSSP 313 (875)
Q Consensus 240 ~~~~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~----~~--~~~~~D~h~VAslLK~fLReLPePL 313 (875)
++-...||.+||..|+..|++++|+||..|.+.+|++|...+-..+ .+ ....||+.+|++.||.|||.||+||
T Consensus 385 -d~iGF~fvrkCI~i~Et~GI~eqGlYR~vGvns~VQKlln~~fDPK~ase~d~dn~~eWeiKTITSaLKtYLRnLpEPL 463 (812)
T KOG1451|consen 385 -DDIGFEFVRKCIDILETSGIHEQGLYRNVGVNSKVQKLLNLGFDPKKASEKDGDNLDEWEIKTITSALKTYLRNLPEPL 463 (812)
T ss_pred -hhhhHHHHHHHHHHHHhcCcccccchhhccchHHHHHHHHhcCCCCCccccccchhhhhhhhhHHHHHHHHHHhCCchh
Confidence 2245789999999999999999999999999999999988754422 22 2357899999999999999999999
Q ss_pred CChhhHHHHHHHHhcCc-hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCccccceeecccccCCCcCC
Q 002835 314 VPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAG 392 (875)
Q Consensus 314 lp~~ly~~~i~a~~~~~-~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NLAi~FgPtLLrp~~s~ 392 (875)
++|.++..||.|++.++ +.|+.+||.|++ +||+.||.+|..||+||.+|+.|+..|.||+.||+|||||+||||++
T Consensus 464 MTY~LHk~FI~AAKsdnq~yRv~aIHsLVH-kLPEKNReMLelLirHLvnVa~hSkeNLMTVSNLGViFGPTLlRpQE-- 540 (812)
T KOG1451|consen 464 MTYELHKVFINAAKSDNQTYRVDAIHSLVH-KLPEKNREMLELLIRHLVNVADHSKENLMTVSNLGVIFGPTLLRPQE-- 540 (812)
T ss_pred hHHHHHHHHHHHHhccchhhhHHHHHHHHH-hccHhhHHHHHHHHHHHHHHHhhhhcccccccccceeecccccCchH--
Confidence 99999999999999999 999999999998 99999999999999999999999999999999999999999999984
Q ss_pred ccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Q 002835 393 ECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEG 438 (875)
Q Consensus 393 ~~e~e~d~~~~g~~~~qL~~a~~~~~~~~~IVe~LIeny~~IF~e~ 438 (875)
|+ ++|+|.+++++-||++||+||++||...
T Consensus 541 ----ET------------VAAiMdIKFQNIVVEILIEnyeKIF~t~ 570 (812)
T KOG1451|consen 541 ----ET------------VAAIMDIKFQNIVVEILIENYEKIFKTK 570 (812)
T ss_pred ----HH------------HHHHHcchhhhhhHHHHHhhhHHHhcCC
Confidence 33 6788888888888999999999999844
No 2
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-46 Score=435.03 Aligned_cols=603 Identities=28% Similarity=0.276 Sum_probs=467.9
Q ss_pred CCCCceeEEEecchhhHHHHHHHHHhhhccCCCC-CCCCcccCcccccchhhccCc-hhhhccc-CCCCCccccChhHhh
Q 002835 162 GRDGRAFTLKAESLEDLYDWKTALENALAQAPST-GSATGQNGILKNDKAEAANGS-VEQLKEK-PVKFPVIGRPILLAL 238 (875)
Q Consensus 162 ~~dgrty~fQAdSEeE~~eWI~AI~~ai~~aP~~-~~~~~~~~if~~~~~~~~~~s-~~~~~~K-~~k~~vFGvpLe~ll 238 (875)
..+++.|...+++-++..+|-.++..+...+|.+ +.+.+++|+|.....++..+. +--+.+- ++.+.+||+|..-.+
T Consensus 286 ~~~a~~fsdKmeti~d~le~e~rye~~~~~Aperdalil~higfv~~~t~~tc~s~~~c~d~~~t~llss~~~rps~g~l 365 (1100)
T KOG4271|consen 286 ELDAKPFSDKMETIQDVLEEEARYEAALKQAPERDALILKHIGFVYHPTKETCPSCPACVDAKITPLLSSVLGRPSLGAL 365 (1100)
T ss_pred hhccccccchhHHHHHHHHhHHHHHHHHHhCcchhhhhhhcCceeeCCCCCCCCCccchhhhccchhhhhhhcCcchhhh
Confidence 4457788899999999999999999999889988 788999999999876544332 2223333 888999999998888
Q ss_pred hcCCCCcHHHHHHHHHHHHhCCccCC---eeecCC-CHHHHHHHHHHHh-cCCCCC--CCCCCch--hhHhhHH--HHHh
Q 002835 239 EDVDGTPSFLEKAIRFIEEHGVQVEG---ILRQAA-YVDDVHRRIREFE-QGKTEF--SPEEDAH--IIADCVK--YVIR 307 (875)
Q Consensus 239 ~~~~~VP~~L~kcI~~Le~~Gl~~EG---IFR~sG-~~~~V~~Lk~~ld-~g~~~~--~~~~D~h--~VAslLK--~fLR 307 (875)
+..++-|.|..+.+.+|+..|+..|| |-|.++ +...|..-+..|. .|+..+ ...++|| .|...++ .-||
T Consensus 366 e~~d~sp~~~~knL~~l~~~Gl~~E~~n~I~~qsa~D~~~id~kiyE~s~dgkt~~~v~~~~~ph~s~v~e~Ie~~~~lr 445 (1100)
T KOG4271|consen 366 ENSDGSPNIDEKNLVILGKDGLAGEGANEIRRQSADDVYVIDGKIYELSIDGKTRLPVNSFQQPHLSYVGESIEKSHSLR 445 (1100)
T ss_pred hhhcCCcccchhhhhhhhhcccchhhhHHHHHhcccchhhhhhhhhhcccccccccchhhhcCcchhHHHhhhhhhhhhh
Confidence 88889999999999999999999999 999999 7777777666775 565443 3345888 6888888 8899
Q ss_pred hCCCCCCChhhHHHHHHH--HhcCc-hHHHHHHHHHHHhh--CChhHHH----HHHHHHHHHHHHHHhhcccCCCcc-cc
Q 002835 308 ELPSSPVPASCCNALLEA--RRTDR-GSRVSAMRTAILET--FPEPNRK----LLQRILMMMQTVASSKNQNRMSTS-AV 377 (875)
Q Consensus 308 eLPePLlp~~ly~~~i~a--~~~~~-~eri~~i~~LI~~~--LP~~Nr~----lL~~Ll~~L~~Va~~S~~NkMta~-NL 377 (875)
.++..+.|..+|..+..+ +...- +.|+..+...|++. .|.+|+. ++.+|+..+..+..++..|.|++. ..
T Consensus 446 ~~~~~~~~~~~C~~ld~a~gY~~~~Ne~riss~~~aices~~~p~pnnk~~~d~~LRivm~m~~g~~~s~~ni~n~~~~s 525 (1100)
T KOG4271|consen 446 QQGQQIAPKLQCVFLDEASGYGRDINEKRISSVLKAICESRNSPEPNNKDLADLDLRIVMCMMCGDPFSADNILNPVLAS 525 (1100)
T ss_pred hcccccCCccccccccccccccccccHHHHHHHHHHHHhhcCCCccccchhHHHHHHHHHHHhcCCchhhhhhcChhhHH
Confidence 999999999999888887 55554 77999999999977 8999888 888999999999999999999999 99
Q ss_pred ceeecc-cccC-CCcCCccccccc-cccCCCChHH----HHHHHHHHH-HHHHHHHHHHhhcccccCCCCCCCccccccc
Q 002835 378 AACMAP-LLLR-PLLAGECEIETD-FNVGGDGSAQ----LLQAAAAAN-HAQAIVITLLEEYDKIFGEGSASPEELYSES 449 (875)
Q Consensus 378 Ai~FgP-tLLr-p~~s~~~e~e~d-~~~~g~~~~q----L~~a~~~~~-~~~~IVe~LIeny~~IF~e~~~s~~~ly~ds 449 (875)
+.|++| .|++ |-..+.|.++.+ |++.|+...+ ++.|...++ .++.+|-.+++.|..||.+..++....-..+
T Consensus 526 ~aCkS~~llL~~pI~~~krrie~~~f~v~~de~vh~~~~~~sA~~~An~~aQ~iI~~~l~D~~si~~~~gl~~~~~s~~s 605 (1100)
T KOG4271|consen 526 AACKSPHLLLRLPIGAGKRRIELSSFDVRKDELVHGYIVLYSAKRKANMEAQDIIPVALTDYASIFLDNGLSREQLSEGS 605 (1100)
T ss_pred HHhcChHHHHhcccccccceecccccccccchhHHHHHHHHHHHhhccchHhhhhhHHhhcchhhhcccchhhhhccccc
Confidence 999999 6888 555899999987 9999999998 777777777 6999999999999999998766552222222
Q ss_pred ccC------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCC-CCCCCCccccccccccccc
Q 002835 450 ELS------------GSGTEEATDDDESYEDDDQDGATPESDAYTDDDLDNASSRSCSES-GESGDSVVYKDKKNIAPFL 516 (875)
Q Consensus 450 ~~~------------~s~sees~d~d~~~~d~~y~s~e~e~~~~~d~d~~~~~~g~~~~~-~~~~~~~~~~d~~~~~~~~ 516 (875)
++. ++....-.|..+ -.++++...+.|......-+..+. ..+++| .|+|.+ ++
T Consensus 606 ~iats~pl~q~~~~~es~~~~~~D~~e---------~~im~e~s~~~dn~~~a~~~tee~~~~Sp~~--s~~~~~---~~ 671 (1100)
T KOG4271|consen 606 EIATSIPLSQPSHKLESFTPFFSDVVE---------KKIMIEGSHMSDNAAEACSTTEEVFNFSPRD--SSPYCN---SN 671 (1100)
T ss_pred ccccccccCCCchhccccccccccccc---------hhhccccccCCccccccccCchhhcCCChhh--cccccC---CC
Confidence 322 111111111111 111111222222222222233333 335555 566666 55
Q ss_pred cccccccccCCCCCCCCCCCCcccCCCCCCCcccCCCCcccccccccccccccCCCcccccccccccccccCCCCCcccc
Q 002835 517 YYVLKMQDVGVGSKSPERNDNSEINQNPSSTSHEKALPQNEDVKDSKNIQNQSENNSSRQVNESAELLVDVSSGTSSEFK 596 (875)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (875)
.+|+|-| +|..-..+...+.+++.|..++...++.+...+++.- .+...++.- .-+...++..++
T Consensus 672 ~~d~d~d-------s~p~~Sp~~e~t~lsst~k~~S~~~~d~g~~~~~i~~------~~~n~~~~r--~i~~Vs~pi~Pk 736 (1100)
T KOG4271|consen 672 LQDSDED-------SPPSYSPFREDTSLSSTSKDHSKLSMDLGGNDVGISF------TMNNFESKR--NINKVSPPIKPK 736 (1100)
T ss_pred ccccCCC-------CCCCcCCccCcccccCCccccccccccccCCCCCccc------ccchhHhhh--hcccCCCCCCCC
Confidence 6666632 2222223344567888888888888877755544411 111112211 113334455555
Q ss_pred ccCCCCccccccC-CCCCCCCcCCCCCccccccccccccCCCcCCCCCCchhhhhhh-----hhcchHHHHHHHHHhhhc
Q 002835 597 LNCQSPKSCLEKS-SPVSNESVYGSKRPTVWGRTAARKNLSMESIDGPSDNEVEIQR-----LEDTKSDLQRKIADEVKG 670 (875)
Q Consensus 597 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 670 (875)
...+.....+.|+ ..-+..+..+++|...|||+.+.|++.+|++|.+++|++.|+| ++.+|-|+|+||+||+|+
T Consensus 737 ~vs~dvt~~a~kp~~sls~asi~~~~Rks~~~~~~g~~~l~~es~~~s~eD~~~~~r~e~~ni~~~k~dsq~Ri~k~~k~ 816 (1100)
T KOG4271|consen 737 AVSPDVTFDATKPDLSLSDASIRDGQRKSVSGRTWGPKDLFDESDYASPEDAVVKPRNEEENIYSVKDDSQQRIIKEIKN 816 (1100)
T ss_pred cCCCCcccccccCcccccccccccCccccccCCCCCcccCCchhcccCcchhhhcccccccceeecchhhhhHHHHHhhc
Confidence 5556666777777 4445577778999999999999999999999999999999999 999999999999999999
Q ss_pred chhHhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHHHhh--hcCCCCCCCCCCCCChhhHHHHhhhhhhhhH
Q 002835 671 NEILEASLESRKKALHERRLALE-NDVARLKDQLQKERDKRTAMEAG--LGEFNGSFPIPDTIDEKTKVELGEIAQAETD 747 (875)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~r~~le-~~v~~l~~ql~~e~~~~~~le~~--~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~ 747 (875)
|+.||||+|||++++++||.+|| +++.|||+++|+|+..|.+...| +..+.|+. +..-.|+|+++.|+.+..+|.|
T Consensus 817 ~~~~QaSder~nks~~~~rts~E~~ekgr~rs~~qapr~~rka~~k~~~lt~~~~~~-d~~~~~sktskkl~k~k~a~hD 895 (1100)
T KOG4271|consen 817 NNKLQASDERRNKSDSERRTSLEFLEKGRLRSIVQAPRLYRKACLKGGLLTNSAGGS-DLSAGPSKTSKKLEKNKLAKHD 895 (1100)
T ss_pred chhhhhhhhhcccccccccccccHhhhhhhhhccccchhHHHHHHhccCcccccccc-ccccCcccchHHHhhhcccccc
Confidence 99999999999999999999999 99999999999999999999998 77777755 6677899999999999999999
Q ss_pred HHHHHHHHHHHHHHHH--HHhhhccCCCCCCcchhcccc---hhhhhhccchH
Q 002835 748 IINLKQKAKDLRVQLS--EQLEKNDGFVGDSSNQLHQTS---TKLKDKQRDNE 795 (875)
Q Consensus 748 v~~l~~~~~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 795 (875)
++|++|+.+.+.+.+ ++++++..++.|+......++ .|.+.=|.|+.
T Consensus 896 -a~lktk~~n~pa~~stt~~s~~~~~~l~~~~t~~k~ip~~~ekc~sfiedtg 947 (1100)
T KOG4271|consen 896 -AKLKTKTKNTPARRSTTWESNYFLTPLQDAVTSEKPIPIFLEKCKSFIEDTG 947 (1100)
T ss_pred -ccccccccCCcccccchhhhhccCCcccccccCCcccchHHHHHHHHHHhcc
Confidence 999999999999999 999999999999888777777 78888888877
No 3
>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins. Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GT
Probab=100.00 E-value=6.6e-40 Score=336.78 Aligned_cols=188 Identities=20% Similarity=0.387 Sum_probs=167.8
Q ss_pred cccChhHhhhc-CCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcC-C-CCCC--CCCCchhhHhhHHH
Q 002835 230 IGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQG-K-TEFS--PEEDAHIIADCVKY 304 (875)
Q Consensus 230 FGvpLe~ll~~-~~~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g-~-~~~~--~~~D~h~VAslLK~ 304 (875)
||+||+.++++ +..||.+|.+|++||+.+|+.+|||||++|+..+|+++++.|+++ . .++. ...|+|+||++||.
T Consensus 1 FG~~L~~~~~~~~~~iP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~lLK~ 80 (194)
T cd04372 1 YGCDLTTLVKAHNTQRPMVVDMCIREIEARGLQSEGLYRVSGFAEEIEDVKMAFDRDGEKADISATVYPDINVITGALKL 80 (194)
T ss_pred CCCChHHHHHHcCCCCChHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHHHcCCCCccCCcccccccHHHHHHHHHH
Confidence 99999999977 457999999999999999999999999999999999999999974 2 2332 23589999999999
Q ss_pred HHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCccccceeecc
Q 002835 305 VIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAP 383 (875)
Q Consensus 305 fLReLPePLlp~~ly~~~i~a~~~~~-~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NLAi~FgP 383 (875)
|||+||+||||+++|+.|+.+.+..+ .+++..++.++. +||+.|+.+|+||+.||++|+.|++.||||+.|||+||||
T Consensus 81 flReLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLaivf~P 159 (194)
T cd04372 81 YFRDLPIPVITYDTYPKFIDAAKISNPDERLEAVHEALM-LLPPAHYETLRYLMEHLKRVTLHEKDNKMNAENLGIVFGP 159 (194)
T ss_pred HHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhc
Confidence 99999999999999999999998887 899999999886 9999999999999999999999999999999999999999
Q ss_pred cccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 002835 384 LLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIF 435 (875)
Q Consensus 384 tLLrp~~s~~~e~e~d~~~~g~~~~qL~~a~~~~~~~~~IVe~LIeny~~IF 435 (875)
+|||++... . +..+......+.||++||+||+.||
T Consensus 160 ~Ll~~~~~~--------------~---~~~~~~~~~~~~iv~~LI~~~~~iF 194 (194)
T cd04372 160 TLMRPPEDS--------------A---LTTLNDMRYQILIVQLLITNEDVLF 194 (194)
T ss_pred ccCCCCCcc--------------H---HHHHHhHHHHHHHHHHHHHhhHhhC
Confidence 999997311 0 2233445667899999999999998
No 4
>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins. Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.7e-39 Score=335.82 Aligned_cols=196 Identities=24% Similarity=0.345 Sum_probs=174.1
Q ss_pred CCccccChhHhhhc-CCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCCCC---CCCCCchhhHhhH
Q 002835 227 FPVIGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEF---SPEEDAHIIADCV 302 (875)
Q Consensus 227 ~~vFGvpLe~ll~~-~~~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~~~~---~~~~D~h~VAslL 302 (875)
+++||+||+.++.+ +..||.+|.+|+.||+++|+.+|||||++|+..+++.++..+|.|.... ....|+|+||++|
T Consensus 2 ~~~FG~~L~~~~~~~~~~iP~~v~~~i~~L~~~gl~~eGIFR~~g~~~~i~~l~~~~d~g~~~~~~~~~~~d~h~va~~l 81 (203)
T cd04386 2 KPVFGTPLEEHLKRTGREIALPIEACVMCLLETGMNEEGLFRVGGGASKLKRLKAALDAGTFSLPLDEFYSDPHAVASAL 81 (203)
T ss_pred CCcCCCCHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCcchhhccCCHHHHHHHH
Confidence 57999999988865 5679999999999999999999999999999999999999999996432 2346999999999
Q ss_pred HHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCccccceee
Q 002835 303 KYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACM 381 (875)
Q Consensus 303 K~fLReLPePLlp~~ly~~~i~a~~~~~-~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NLAi~F 381 (875)
|.|||+||+||||.++|+.|+.+.+..+ ..|+..++.+|. +||+.|+.+|+||+.||++|+.|++.|+|++.|||+||
T Consensus 82 K~fLreLp~pli~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~LP~~n~~~L~~l~~~l~~v~~~~~~NkM~~~nLai~f 160 (203)
T cd04386 82 KSYLRELPDPLLTYNLYEDWVQAANKPDEDERLQAIWRILN-KLPRENRDNLRYLIKFLSKLAQKSDENKMSPSNIAIVL 160 (203)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHh
Confidence 9999999999999999999999988877 789999999886 99999999999999999999999999999999999999
Q ss_pred cccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Q 002835 382 APLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEG 438 (875)
Q Consensus 382 gPtLLrp~~s~~~e~e~d~~~~g~~~~qL~~a~~~~~~~~~IVe~LIeny~~IF~e~ 438 (875)
||+|||++..+ .. .+.+.....+++.+|++||+||+.||+++
T Consensus 161 aP~ll~~~~~~--------------~~-~~~~~~~~~~~~~iv~~LI~~~~~iF~~~ 202 (203)
T cd04386 161 APNLLWAKNEG--------------SL-AEMAAGTSVHVVAIVELIISHADWFFPGE 202 (203)
T ss_pred ccccCCCCCCC--------------hh-hhhhhhhhHHHHHHHHHHHHhHHHhCCCC
Confidence 99999997311 00 12223445678999999999999999975
No 5
>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins. ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.3e-39 Score=331.14 Aligned_cols=190 Identities=21% Similarity=0.399 Sum_probs=173.6
Q ss_pred ccccChhHhhhcCCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCCCCCCCCCchhhHhhHHHHHhh
Q 002835 229 VIGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHIIADCVKYVIRE 308 (875)
Q Consensus 229 vFGvpLe~ll~~~~~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~~~~~~~~D~h~VAslLK~fLRe 308 (875)
+||+||+.++. +..||.+|.+|+.||+++|+.+|||||++|+..++++++..+|.|.......+|+|+||++||.|||+
T Consensus 1 ~FG~~L~~~~~-~~~vP~~i~~~i~~l~~~g~~~eGiFR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~va~~lK~flre 79 (192)
T cd04402 1 LFGQPLSNICE-DDNLPKPILDMLSLLYQKGPSTEGIFRRSANAKACKELKEKLNSGVEVDLKAEPVLLLASVLKDFLRN 79 (192)
T ss_pred CCCCcHHHHhC-CCCCCHHHHHHHHHHHHhCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCCCccCCHHHHHHHHHHHHHh
Confidence 69999999888 77899999999999999999999999999999999999999999975545678999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCccccceeecccccC
Q 002835 309 LPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLR 387 (875)
Q Consensus 309 LPePLlp~~ly~~~i~a~~~~~-~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NLAi~FgPtLLr 387 (875)
||+||||++.|+.|+.+++..+ ..++..++.++. +||+.|+.+|+||+.||++|+.+++.|+||+.|||+||||+|||
T Consensus 80 LpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~-~LP~~n~~~L~~l~~~L~~V~~~~~~NkM~~~nLAi~faP~l~~ 158 (192)
T cd04402 80 IPGSLLSSDLYEEWMSALDQENEEEKIAELQRLLD-KLPRPNVLLLKHLICVLHNISQNSETNKMDAFNLAVCIAPSLLW 158 (192)
T ss_pred CCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHhhhhccccccC
Confidence 9999999999999999998877 889999999886 99999999999999999999999999999999999999999999
Q ss_pred CCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Q 002835 388 PLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEG 438 (875)
Q Consensus 388 p~~s~~~e~e~d~~~~g~~~~qL~~a~~~~~~~~~IVe~LIeny~~IF~e~ 438 (875)
++... .........++.+|++||+||+.||+++
T Consensus 159 ~~~~~------------------~~~~~~~~~~~~~~~~LI~~~~~IF~~~ 191 (192)
T cd04402 159 PPASS------------------ELQNEDLKKVTSLVQFLIENCQEIFGED 191 (192)
T ss_pred CCCcc------------------HHHHHHHHhhhHHHHHHHHhHHHhCCCC
Confidence 97311 0123345678899999999999999975
No 6
>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain. ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the r
Probab=100.00 E-value=4e-39 Score=332.04 Aligned_cols=190 Identities=23% Similarity=0.420 Sum_probs=167.9
Q ss_pred CccccChhHhhhcC-----CCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCC-CCCCCCCchhhHhh
Q 002835 228 PVIGRPILLALEDV-----DGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT-EFSPEEDAHIIADC 301 (875)
Q Consensus 228 ~vFGvpLe~ll~~~-----~~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~~-~~~~~~D~h~VAsl 301 (875)
.|||+||++++... ..||.+|.+|+.||+++|+.+|||||++|+...++++++.||.|.. .+....|+|+||++
T Consensus 1 ~iFG~~L~~~~~~~~~~~~~~iP~~i~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~~d~h~va~l 80 (199)
T cd04390 1 GVFGQRLEDTVAYERKFGPRLVPILVEQCVDFIREHGLKEEGLFRLPGQANLVKQLQDAFDAGERPSFDSDTDVHTVASL 80 (199)
T ss_pred CcCCccHHHHHHHhcccCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHHHHhCCCCCCccccCCHHHHHHH
Confidence 48999999888532 3599999999999999999999999999999999999999999964 44456899999999
Q ss_pred HHHHHhhCCCCCCChhhHHHHHHHHhcCc---hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCccccc
Q 002835 302 VKYVIRELPSSPVPASCCNALLEARRTDR---GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVA 378 (875)
Q Consensus 302 LK~fLReLPePLlp~~ly~~~i~a~~~~~---~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NLA 378 (875)
||.|||+||+||+|+++|+.|+.+.+..+ ..++..++.+|. +||+.|+.+|+||+.||++|+.|++.||||+.|||
T Consensus 81 LK~fLReLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~l~~~l~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA 159 (199)
T cd04390 81 LKLYLRELPEPVIPWAQYEDFLSCAQLLSKDEEKGLGELMKQVS-ILPKVNYNLLSYICRFLDEVQSNSSVNKMSVQNLA 159 (199)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHhccCccHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHH
Confidence 99999999999999999999999876543 677889999885 99999999999999999999999999999999999
Q ss_pred eeecccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 002835 379 ACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIF 435 (875)
Q Consensus 379 i~FgPtLLrp~~s~~~e~e~d~~~~g~~~~qL~~a~~~~~~~~~IVe~LIeny~~IF 435 (875)
+||||+|||++. ++ . ..++......+.+|++||+||++||
T Consensus 160 ivf~P~llr~~~------~~--------~---~~~~~~~~~~~~~~~~lI~~~~~~F 199 (199)
T cd04390 160 TVFGPNILRPKV------ED--------P---ATIMEGTPQIQQLMTVMISKHEPLF 199 (199)
T ss_pred HHhccccCCCCC------CC--------H---HHHHhccHHHHHHHHHHHHhhhhcC
Confidence 999999999873 22 1 2234455677899999999999998
No 7
>cd04391 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins. The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=8.6e-39 Score=333.73 Aligned_cols=198 Identities=26% Similarity=0.336 Sum_probs=173.7
Q ss_pred ccccChhHhhhc------CCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCC---CCCCCCCCchhhH
Q 002835 229 VIGRPILLALED------VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGK---TEFSPEEDAHIIA 299 (875)
Q Consensus 229 vFGvpLe~ll~~------~~~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~---~~~~~~~D~h~VA 299 (875)
|||+||+.++.+ +..||.+|.+|+.||+++|+.+|||||++|+..+|++|+..++.+. .......|+|+||
T Consensus 1 vFGv~L~~l~~~~~~~~~~~~iP~~l~~~i~~l~~~gl~~EGIFR~~G~~~~i~~l~~~ld~~~~~~~~~~~~~~~h~va 80 (216)
T cd04391 1 LFGVPLSTLLERDQKKVPGSKVPLIFQKLINKLEERGLETEGILRIPGSAQRVKFLCQELEAKFYEGTFLWDQVKQHDAA 80 (216)
T ss_pred CCCCCHHHHHHHhcccCCCCCCCcHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHHHhcccccCccccccCCHHHHH
Confidence 799999999975 3469999999999999999999999999999999999999999863 1223457999999
Q ss_pred hhHHHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCccccc
Q 002835 300 DCVKYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVA 378 (875)
Q Consensus 300 slLK~fLReLPePLlp~~ly~~~i~a~~~~~-~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NLA 378 (875)
++||.|||+||+||||+++|+.|+.+....+ .+++.+++.++. +||+.|+.+|+||+.||++|+.|++.||||+.|||
T Consensus 81 ~lLK~flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~l~~li~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA 159 (216)
T cd04391 81 SLLKLFIRELPQPLLTVEYLPAFYSVQGLPSKKDQLQALNLLVL-LLPEANRDTLKALLEFLQKVVDHEEKNKMNLWNVA 159 (216)
T ss_pred HHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHccccCCCChHHHH
Confidence 9999999999999999999999999988877 789999999885 99999999999999999999999999999999999
Q ss_pred eeecccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Q 002835 379 ACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEG 438 (875)
Q Consensus 379 i~FgPtLLrp~~s~~~e~e~d~~~~g~~~~qL~~a~~~~~~~~~IVe~LIeny~~IF~e~ 438 (875)
+||||+||++...... ....++..+..+..++.||++||+|++.||..+
T Consensus 160 ivfaP~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~iv~~lI~~~~~if~~p 208 (216)
T cd04391 160 MIMAPNLFPPRGKHSK-----------DNESLQEEVNMAAGCANIMRLLIRYQDLLWTVP 208 (216)
T ss_pred HHhccccCCCCCCCCC-----------cchhHHHHHHHHHHHHHHHHHHHHhHHHHhcCC
Confidence 9999999998742211 112234556677788999999999999999854
No 8
>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2e-38 Score=331.87 Aligned_cols=205 Identities=21% Similarity=0.356 Sum_probs=172.7
Q ss_pred CCccccChhHhhhc-CCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCC-CCCCCCCCchhhHhhHHH
Q 002835 227 FPVIGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGK-TEFSPEEDAHIIADCVKY 304 (875)
Q Consensus 227 ~~vFGvpLe~ll~~-~~~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~-~~~~~~~D~h~VAslLK~ 304 (875)
+.|||+||+.++++ +..||.+|.+|+.||+.+|+++|||||++|+..+|+.|++.++.+. .......++|+||++||.
T Consensus 2 ~~vFGvpL~~~~~r~g~~IP~~i~~~i~~L~~~gl~~eGIFR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~~va~lLK~ 81 (220)
T cd04375 2 KNVFGVPLLVNLQRTGQPLPRSIQQAMRWLRNNALDQVGLFRKSGVKSRIQKLRSMIESSTDNVNYDGQQAYDVADMLKQ 81 (220)
T ss_pred CCEecCcHHHHHhhcCCCCChHHHHHHHHHHHhCCCccceeecCCcHHHHHHHHHHHhcCCCccCcccccHHHHHHHHHH
Confidence 46999999988875 6779999999999999999999999999999999999999999863 333456789999999999
Q ss_pred HHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCccccceeecc
Q 002835 305 VIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAP 383 (875)
Q Consensus 305 fLReLPePLlp~~ly~~~i~a~~~~~-~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NLAi~FgP 383 (875)
|||+||+||||+++|+.|+.+.+..+ ++++.+++.++. +||++||.+|+||+.||++|+.|++.|+||+.|||+||||
T Consensus 82 flReLPePLlt~~l~~~fi~~~~~~~~~~~~~~l~~~i~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP 160 (220)
T cd04375 82 YFRDLPEPLLTNKLSETFIAIFQYVPKEQRLEAVQCAIL-LLPDENREVLQTLLYFLSDVAANSQENQMTATNLAVCLAP 160 (220)
T ss_pred HHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHhh
Confidence 99999999999999999999988777 899999999886 9999999999999999999999999999999999999999
Q ss_pred cccCCCcCCccccc------cccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 002835 384 LLLRPLLAGECEIE------TDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFG 436 (875)
Q Consensus 384 tLLrp~~s~~~e~e------~d~~~~g~~~~qL~~a~~~~~~~~~IVe~LIeny~~IF~ 436 (875)
+||+........+. ... ..|... ...+.....++.+|.+||+||+.||.
T Consensus 161 ~L~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~l~e~~~~~~~v~~lI~~~~~lf~ 215 (220)
T cd04375 161 SLFHLNTSRRENSSPARRMQRKK-SLGKPD---QKELSENKAAHQCLAYMIEECNTLFM 215 (220)
T ss_pred hhcCCCCCCcccccchhhhcccc-ccCCCc---HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99998642110000 000 011111 12234555678899999999999997
No 9
>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=100.00 E-value=2.1e-38 Score=323.74 Aligned_cols=184 Identities=24% Similarity=0.326 Sum_probs=165.4
Q ss_pred cccChhHhhhcCCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCC-CCCCCCCchhhHhhHHHHHhh
Q 002835 230 IGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT-EFSPEEDAHIIADCVKYVIRE 308 (875)
Q Consensus 230 FGvpLe~ll~~~~~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~~-~~~~~~D~h~VAslLK~fLRe 308 (875)
|||||+.++.++..||.+|.+|++||+++|+.+|||||++|+..++++|++.|+.|.. .....+|+|+||++||.|||+
T Consensus 1 FGv~L~~~~~~~~~vP~il~~~i~~l~~~gl~~EGIfR~~Gs~~~i~~l~~~~~~~~~~~~~~~~d~h~va~lLK~flRe 80 (186)
T cd04407 1 FGVRVGSLTSNKTSVPIVLEKLLEHVEMHGLYTEGIYRKSGSANRMKELHQLLQADPENVKLENYPIHAITGLLKQWLRE 80 (186)
T ss_pred CCCcHHHHHhCCCCCCcHHHHHHHHHHHcCCCCCceeecCCCHHHHHHHHHHHhcCCcccCcccCCHHHHHHHHHHHHHh
Confidence 9999999998888999999999999999999999999999999999999999998753 233567999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCccccceeecccccC
Q 002835 309 LPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLR 387 (875)
Q Consensus 309 LPePLlp~~ly~~~i~a~~~~~-~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NLAi~FgPtLLr 387 (875)
||+||||+++|+.|+.+.+..+ .+++..++.+|. +||+.|+.+|+||+.||++|+.|++.|+||+.|||+||||+|||
T Consensus 81 LPepLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivfaP~Ll~ 159 (186)
T cd04407 81 LPEPLMTFAQYNDFLRAVELPEKQEQLQAIYRVLE-QLPTANHNTLERLIFHLVKVALEEDVNRMSPNALAIVFAPCLLR 159 (186)
T ss_pred CCCccCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHhccccCCCChhHHHHhhhccccC
Confidence 9999999999999999988877 889999999885 99999999999999999999999999999999999999999999
Q ss_pred CCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 002835 388 PLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEE 430 (875)
Q Consensus 388 p~~s~~~e~e~d~~~~g~~~~qL~~a~~~~~~~~~IVe~LIen 430 (875)
++... + . +..+....+.+.+|++||..
T Consensus 160 ~~~~~-----d--------~---~~~~~~~~~~~~~v~~li~~ 186 (186)
T cd04407 160 CPDSS-----D--------P---LTSMKDVAKTTTCVEMLIKE 186 (186)
T ss_pred CCCCC-----C--------H---HHHHHhhhhhHHHHHHHhhC
Confidence 86311 1 1 23445667888999999963
No 10
>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA. CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.3e-38 Score=327.63 Aligned_cols=189 Identities=23% Similarity=0.349 Sum_probs=165.5
Q ss_pred CccccChhHhhhc-CCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCCC-CC---CCCCchhhHhhH
Q 002835 228 PVIGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTE-FS---PEEDAHIIADCV 302 (875)
Q Consensus 228 ~vFGvpLe~ll~~-~~~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~~~-~~---~~~D~h~VAslL 302 (875)
++||+||+.++.+ +..||.+|.+|++||+.+|+ +|||||++|+..++++|++.||+|... +. ...|+|+||++|
T Consensus 1 ~vFG~~L~~~~~~~g~~iP~il~~~i~~l~~~g~-~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~lL 79 (195)
T cd04384 1 RVFGCDLTEHLLNSGQDVPQVLKSCTEFIEKHGI-VDGIYRLSGIASNIQRLRHEFDSEQIPDLTKDVYIQDIHSVSSLC 79 (195)
T ss_pred CcCCccHHHHHHHcCCCCChHHHHHHHHHHHcCC-CcCeeeCCCCHHHHHHHHHHHcCCCCCCcccccccccHHHHHHHH
Confidence 4899999988865 67899999999999999999 699999999999999999999998632 21 346999999999
Q ss_pred HHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCccccceee
Q 002835 303 KYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACM 381 (875)
Q Consensus 303 K~fLReLPePLlp~~ly~~~i~a~~~~~-~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NLAi~F 381 (875)
|.|||+||+||||+.+|+.|+.+.+..+ .+++..++.+|. +||+.|+.+|+||+.||++|+.|++.||||+.|||+||
T Consensus 80 K~flReLPePLi~~~~y~~~~~~~~~~~~~~~~~~l~~li~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf 158 (195)
T cd04384 80 KLYFRELPNPLLTYQLYEKFSEAVSAASDEERLEKIHDVIQ-QLPPPHYRTLEFLMRHLSRLAKYCSITNMHAKNLAIVW 158 (195)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHhhHhh
Confidence 9999999999999999999999998877 899999999886 99999999999999999999999999999999999999
Q ss_pred cccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 002835 382 APLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEE 430 (875)
Q Consensus 382 gPtLLrp~~s~~~e~e~d~~~~g~~~~qL~~a~~~~~~~~~IVe~LIen 430 (875)
||+|||++..... .+.| .++.+....++.||++||+|
T Consensus 159 ~P~L~~~~~~~~~------~~~~------~~~~~~~~~q~~v~~~~~~~ 195 (195)
T cd04384 159 APNLLRSKQIESA------CFSG------TAAFMEVRIQSVVVEFILNH 195 (195)
T ss_pred hhhcCCCCccccc------cchH------HHHHHHHhhhhhheehhhcC
Confidence 9999999742110 0001 34566677788899999986
No 11
>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs. srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific group
Probab=100.00 E-value=3.2e-38 Score=322.88 Aligned_cols=183 Identities=20% Similarity=0.360 Sum_probs=165.0
Q ss_pred CccccChhHhhhc-CCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCCCC---CCCCCchhhHhhHH
Q 002835 228 PVIGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEF---SPEEDAHIIADCVK 303 (875)
Q Consensus 228 ~vFGvpLe~ll~~-~~~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~~~~---~~~~D~h~VAslLK 303 (875)
.+||++|+.+++. +..||.+|.+|++||+.+|+.+|||||++|+..+++++++.|++|...+ ....|+|+||++||
T Consensus 1 k~FG~~L~~~~~~~~~~IP~~v~~~i~~l~~~gl~~EGIFRv~G~~~~i~~l~~~~d~g~~~~~~~~~~~d~~~va~lLK 80 (188)
T cd04383 1 KLFNGSLEEYIQDSGQAIPLVVESCIRFINLYGLQHQGIFRVSGSQVEVNDIKNAFERGEDPLADDQNDHDINSVAGVLK 80 (188)
T ss_pred CcCCccHHHHHHHCCCCCChHHHHHHHHHHHcCCCCCCeeecCCCHHHHHHHHHHHhcCCCccccccccccHHHHHHHHH
Confidence 4899999998866 6689999999999999999999999999999999999999999986432 34679999999999
Q ss_pred HHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCccccceeec
Q 002835 304 YVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMA 382 (875)
Q Consensus 304 ~fLReLPePLlp~~ly~~~i~a~~~~~-~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NLAi~Fg 382 (875)
.|||+||+||||+++|+.|+.+.+..+ .+++..++.+|. +||+.|+.+|+||+.||++|++|++.|+||+.|||+|||
T Consensus 81 ~fLReLPepLip~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~ 159 (188)
T cd04383 81 LYFRGLENPLFPKERFEDLMSCVKLENPTERVHQIREILS-TLPRSVIIVMRYLFAFLNHLSQFSDENMMDPYNLAICFG 159 (188)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHHhhCCCcccceeeee
Confidence 999999999999999999999999888 889999999886 999999999999999999999999999999999999999
Q ss_pred ccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 002835 383 PLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEE 430 (875)
Q Consensus 383 PtLLrp~~s~~~e~e~d~~~~g~~~~qL~~a~~~~~~~~~IVe~LIen 430 (875)
|+|||.+... ..+....++++||+.||.|
T Consensus 160 P~L~~~p~~~-------------------~~~~~~~~~~~~~~~li~~ 188 (188)
T cd04383 160 PTLMPVPEGQ-------------------DQVSCQAHVNELIKTIIIH 188 (188)
T ss_pred ccccCCCCCc-------------------cHHHHHHHHHHHHHHHhcC
Confidence 9999986311 1234567889999999975
No 12
>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin. RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low int
Probab=100.00 E-value=1.4e-38 Score=323.91 Aligned_cols=175 Identities=21% Similarity=0.367 Sum_probs=162.9
Q ss_pred cccChhHhhhc-----CCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCCCCCCCCCchhhHhhHHH
Q 002835 230 IGRPILLALED-----VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHIIADCVKY 304 (875)
Q Consensus 230 FGvpLe~ll~~-----~~~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~~~~~~~~D~h~VAslLK~ 304 (875)
||+||+.++++ +..||.+|.+|+.||+++|+++|||||++|+..+|++|++.|++|.......+|+|+||++||.
T Consensus 1 FGv~L~~~~~~~~~~~g~~iP~~v~~~i~~l~~~gl~~EGIfR~~G~~~~i~~l~~~~~~~~~~~~~~~d~h~va~lLK~ 80 (182)
T cd04381 1 FGASLSLAVERSRCHDGIDLPLVFRECIDYVEKHGMKCEGIYKVSGIKSKVDELKAAYNRRESPNLEEYEPPTVASLLKQ 80 (182)
T ss_pred CCCCHHHHHHhhccCCCCcCChHHHHHHHHHHHhCCCCCceeecCCcHHHHHHHHHHHcCCCCCCccccChHHHHHHHHH
Confidence 99999998876 3459999999999999999999999999999999999999999987555556799999999999
Q ss_pred HHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCccccceeecc
Q 002835 305 VIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAP 383 (875)
Q Consensus 305 fLReLPePLlp~~ly~~~i~a~~~~~-~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NLAi~FgP 383 (875)
|||+||+||||.++|+.|+.++...+ .+|+..++.+|. +||+.|+.+|+||+.||++|+.|++.|+||+.|||+||||
T Consensus 81 fLReLP~pLi~~~~~~~~~~~~~~~~~~~r~~~l~~li~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP 159 (182)
T cd04381 81 YLRELPEPLLTKELMPRFEEACGRPTEAEREQELQRLLK-ELPECNRLLLAWLIVHMDHVIAQELETKMNIQNISIVLSP 159 (182)
T ss_pred HHHhCCCccCCHHHHHHHHHHcCCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHHHHhCc
Confidence 99999999999999999999988877 889999999886 9999999999999999999999999999999999999999
Q ss_pred cccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Q 002835 384 LLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGE 437 (875)
Q Consensus 384 tLLrp~~s~~~e~e~d~~~~g~~~~qL~~a~~~~~~~~~IVe~LIeny~~IF~e 437 (875)
+|+.+. .++..||+||+.||++
T Consensus 160 ~l~~~~--------------------------------~~~~~li~~~~~if~~ 181 (182)
T cd04381 160 TVQISN--------------------------------RLLYALLTHCQELFGN 181 (182)
T ss_pred cccCcH--------------------------------HHHHHHHHHHHHHcCC
Confidence 997642 5899999999999986
No 13
>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains. Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.8e-38 Score=322.02 Aligned_cols=182 Identities=28% Similarity=0.412 Sum_probs=162.8
Q ss_pred cccChhHhhhc-CCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCC-CC--CCCCCchhhHhhHHHH
Q 002835 230 IGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT-EF--SPEEDAHIIADCVKYV 305 (875)
Q Consensus 230 FGvpLe~ll~~-~~~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~~-~~--~~~~D~h~VAslLK~f 305 (875)
||+||+.++++ +..||.+|.+|+.||+.+|+++|||||++|+...+++|+..+|.|.. ++ ....|+|+||++||.|
T Consensus 1 FGv~L~~~~~~~~~~iP~~l~~~i~~l~~~gl~~eGIFR~sg~~~~v~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK~f 80 (187)
T cd04403 1 FGCHLEALCQRENSTVPKFVRLCIEAVEKRGLDVDGIYRVSGNLAVIQKLRFAVDHDEKLDLDDSKWEDIHVITGALKLF 80 (187)
T ss_pred CCCChHHHHHHcCCCCChHHHHHHHHHHHhCCCcCceeeecCcHHHHHHHHHHhcCCCCCCccccccccHHHHHHHHHHH
Confidence 99999999876 56799999999999999999999999999999999999999999753 22 2356999999999999
Q ss_pred HhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCccccceeeccc
Q 002835 306 IRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPL 384 (875)
Q Consensus 306 LReLPePLlp~~ly~~~i~a~~~~~-~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NLAi~FgPt 384 (875)
||+||+||||+++|+.|+.+.+..+ .+++..++.++. +||+.|+.+|+||+.||++|+.|++.|+||+.|||+||||+
T Consensus 81 LReLPepLi~~~~~~~~~~~~~~~~~~~~i~~l~~ll~-~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLAivf~P~ 159 (187)
T cd04403 81 FRELPEPLFPYSLFNDFVAAIKLSDYEQRVSAVKDLIK-SLPKPNHDTLKMLFRHLCRVIEHGEKNRMTTQNLAIVFGPT 159 (187)
T ss_pred HhcCCCCcCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHhccccccCChHHhhhhcccc
Confidence 9999999999999999999999888 899999999886 99999999999999999999999999999999999999999
Q ss_pred ccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 002835 385 LLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEE 430 (875)
Q Consensus 385 LLrp~~s~~~e~e~d~~~~g~~~~qL~~a~~~~~~~~~IVe~LIen 430 (875)
|||++. ++ ...+....+++.||++||+|
T Consensus 160 ll~~~~------~~------------~~~~~~~~~~~~~ve~l~~~ 187 (187)
T cd04403 160 LLRPEQ------ET------------GNIAVHMVYQNQIVELILLE 187 (187)
T ss_pred ccCCCC------cc------------hHHHHHhHHHHHHHHHHhhC
Confidence 999873 11 01222445788999999985
No 14
>cd04397 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins. Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4e-38 Score=328.06 Aligned_cols=190 Identities=17% Similarity=0.290 Sum_probs=165.9
Q ss_pred cccChhHhhhcCC------------CCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCCC--CCCCCCc
Q 002835 230 IGRPILLALEDVD------------GTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTE--FSPEEDA 295 (875)
Q Consensus 230 FGvpLe~ll~~~~------------~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~~~--~~~~~D~ 295 (875)
||+||+.++++.. .||.+|.+|+.||+++|+.+|||||++|+..++++|+..|+.|... .....++
T Consensus 1 FGv~L~~l~~~~~~~~~~~~~~~~~~IP~~l~~~i~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~d~~~~~~ 80 (213)
T cd04397 1 FGVPLEILVEKFGADSTLGVGPGKLRIPALIDDIISAMRQMDMSVEGVFRKNGNIRRLKELTEEIDKNPTEVPDLSKENP 80 (213)
T ss_pred CCCCHHHHHHHhCcccccccCCCCCCCCHHHHHHHHHHHHcCCCcCCeeeecchHHHHHHHHHHHhcCCCcccccccCcH
Confidence 9999999998732 4999999999999999999999999999999999999999997532 2345789
Q ss_pred hhhHhhHHHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhc-----c
Q 002835 296 HIIADCVKYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKN-----Q 369 (875)
Q Consensus 296 h~VAslLK~fLReLPePLlp~~ly~~~i~a~~~~~-~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~-----~ 369 (875)
|+||++||.|||+||+||||+++|+.|+.+.+..+ +.++..++.++. +||+.||.+|+||+.||++|+.++. .
T Consensus 81 ~~va~lLK~flReLPepLi~~~~y~~~i~~~~~~~~~~~~~~l~~l~~-~LP~~n~~~L~~L~~~L~~V~~~s~i~~~~~ 159 (213)
T cd04397 81 VQLAALLKKFLRELPDPLLTFKLYRLWISSQKIEDEEERKRVLHLVYC-LLPKYHRDTMEVLFSFLKWVSSFSHIDEETG 159 (213)
T ss_pred HHHHHHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHhhhhcccCC
Confidence 99999999999999999999999999999998888 788888888775 9999999999999999999998875 5
Q ss_pred cCCCccccceeecccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Q 002835 370 NRMSTSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEG 438 (875)
Q Consensus 370 NkMta~NLAi~FgPtLLrp~~s~~~e~e~d~~~~g~~~~qL~~a~~~~~~~~~IVe~LIeny~~IF~e~ 438 (875)
||||+.|||+||||+|||++.... .........+.+|++||+||+.||.-.
T Consensus 160 NkM~~~NLAivf~P~Ll~~~~~~~------------------~~~~~~~~~~~vv~~LI~n~~~if~vp 210 (213)
T cd04397 160 SKMDIHNLATVITPNILYSKTDNP------------------NTGDEYFLAIEAVNYLIENNEEFCEVP 210 (213)
T ss_pred CcCChHHhHHhhcccccCCCCCCc------------------chHHHHHHHHHHHHHHHHhHHHHhcCC
Confidence 999999999999999999873210 111233456789999999999999843
No 15
>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=7.5e-38 Score=321.96 Aligned_cols=189 Identities=21% Similarity=0.342 Sum_probs=168.5
Q ss_pred ccccChhHhhhc--CCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCCCC----CCCCCchhhHhhH
Q 002835 229 VIGRPILLALED--VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEF----SPEEDAHIIADCV 302 (875)
Q Consensus 229 vFGvpLe~ll~~--~~~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~~~~----~~~~D~h~VAslL 302 (875)
+||+||+..+.. +..||.+|.+|+.+|+.+|+++|||||++|+..++++|++.+|.|.... ....|+|+||++|
T Consensus 1 ~FGvpl~~~~~~~~~~~vP~iv~~~~~~l~~~g~~~eGIFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~d~~~va~ll 80 (196)
T cd04395 1 TFGVPLDDCPPSSENPYVPLIVEVCCNIVEARGLETVGIYRVPGNNAAISALQEELNRGGFDIDLQDPRWRDVNVVSSLL 80 (196)
T ss_pred CCCccHHHHhcccCCCCCChHHHHHHHHHHHcCCCCccceeCCCcHHHHHHHHHHHhcCCCCcCccccccccHHHHHHHH
Confidence 599999987754 3679999999999999999999999999999999999999999986432 2346999999999
Q ss_pred HHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCccccceee
Q 002835 303 KYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACM 381 (875)
Q Consensus 303 K~fLReLPePLlp~~ly~~~i~a~~~~~-~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NLAi~F 381 (875)
|.|||+||+||||.++|+.|+.+.+..+ .+++..++.+|. +||+.|+.+|.||+.||++|+.|++.|+|++.|||+||
T Consensus 81 K~flr~Lp~pli~~~~~~~~i~~~~~~~~~~~i~~l~~~i~-~LP~~n~~~L~~l~~~L~~v~~~~~~NkM~~~nLAi~f 159 (196)
T cd04395 81 KSFFRKLPEPLFTNELYPDFIEANRIEDPVERLKELRRLIH-SLPDHHYETLKHLIRHLKTVADNSEVNKMEPRNLAIVF 159 (196)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHhhccccccccchHHhh
Confidence 9999999999999999999999988888 899999999886 99999999999999999999999999999999999999
Q ss_pred cccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 002835 382 APLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIF 435 (875)
Q Consensus 382 gPtLLrp~~s~~~e~e~d~~~~g~~~~qL~~a~~~~~~~~~IVe~LIeny~~IF 435 (875)
||+|+|++... +..........+.||+.||+||++||
T Consensus 160 aP~l~r~~~~~-----------------~~~~~~~~~~~~~ii~~LI~~~d~~f 196 (196)
T cd04395 160 GPTLVRTSDDN-----------------METMVTHMPDQCKIVETLIQHYDWFF 196 (196)
T ss_pred ccccCCCCCCC-----------------HHHHHHhHHHHHHHHHHHHHhCcccC
Confidence 99999987311 12233455677899999999999998
No 16
>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3). It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1e-37 Score=320.63 Aligned_cols=190 Identities=24% Similarity=0.418 Sum_probs=169.1
Q ss_pred CCCccccChhHhhhcC---CCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCC-CCCCCCCchhhHhh
Q 002835 226 KFPVIGRPILLALEDV---DGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT-EFSPEEDAHIIADC 301 (875)
Q Consensus 226 k~~vFGvpLe~ll~~~---~~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~~-~~~~~~D~h~VAsl 301 (875)
++.+||+||+.++++. ..||.+|.+|++||+++|+++|||||++|+..+++++++.+|.|.. .+....|+|+||++
T Consensus 2 ~~~~FGv~L~~~~~~~~~~~~iP~il~~~i~~l~~~g~~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~~ 81 (195)
T cd04404 2 PTQQFGVSLQFLKEKNPEQEPIPPVVRETVEYLQAHALTTEGIFRRSANTQVVKEVQQKYNMGEPVDFDQYEDVHLPAVI 81 (195)
T ss_pred CCCcCCCcHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCCcccccCHHHHHHH
Confidence 5789999999988763 5799999999999999999999999999999999999999999863 34333499999999
Q ss_pred HHHHHhhCCCCCCChhhHHHHHHHHhcCchHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCccccceee
Q 002835 302 VKYVIRELPSSPVPASCCNALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACM 381 (875)
Q Consensus 302 LK~fLReLPePLlp~~ly~~~i~a~~~~~~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NLAi~F 381 (875)
||.|||+||+||||.++|+.|+.+.+.+...++..++.+|. +||+.|+.+|.+|+.||++|+.|++.|+|++.|||+||
T Consensus 82 LK~~lr~Lp~pLi~~~~~~~l~~~~~~~~~~~~~~~~~~i~-~LP~~n~~~L~~L~~~l~~i~~~s~~NkM~~~nLa~vf 160 (195)
T cd04404 82 LKTFLRELPEPLLTFDLYDDIVGFLNVDKEERVERVKQLLQ-TLPEENYQVLKYLIKFLVQVSAHSDQNKMTNSNLAVVF 160 (195)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHhcccccCCCHhHhheee
Confidence 99999999999999999999999876655778999999886 89999999999999999999999999999999999999
Q ss_pred cccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 002835 382 APLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIF 435 (875)
Q Consensus 382 gPtLLrp~~s~~~e~e~d~~~~g~~~~qL~~a~~~~~~~~~IVe~LIeny~~IF 435 (875)
||+|||++... .........+.+|++||+||+.||
T Consensus 161 aP~l~~~~~~~-------------------~~l~~~~~~~~~~~~LI~~~~~iF 195 (195)
T cd04404 161 GPNLLWAKDAS-------------------MSLSAINPINTFTKFLLDHQDEIF 195 (195)
T ss_pred eccccCCCCcc-------------------cCHHHHHHHHHHHHHHHHhHHhhC
Confidence 99999987310 012345677889999999999998
No 17
>cd04408 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=8.6e-38 Score=322.65 Aligned_cols=185 Identities=20% Similarity=0.319 Sum_probs=163.2
Q ss_pred cccChhHhhhc-CCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCCC-CCCCCCchhhHhhHHHHHh
Q 002835 230 IGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTE-FSPEEDAHIIADCVKYVIR 307 (875)
Q Consensus 230 FGvpLe~ll~~-~~~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~~~-~~~~~D~h~VAslLK~fLR 307 (875)
||+||+.++++ +..||.+|.+|++||+.+|+.+|||||++|+..++++|++.|+.|... .....+||+||++||.|||
T Consensus 1 FGv~l~~l~~~~~~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~lLK~fLR 80 (200)
T cd04408 1 FGVDFSQLPRDFPEEVPFVVVRCTAEIENRALGVQGIYRISGSKARVEKLCQAFENGRDLVDLSGHSPHDITSVLKHFLK 80 (200)
T ss_pred CCCCHHHHHHhCCCCCChHHHHHHHHHHHcCCCCcceeeCCCcHHHHHHHHHHHhcCCCccCcccCCHHHHHHHHHHHHH
Confidence 99999988876 778999999999999999999999999999999999999999998632 2346799999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHhcC------------c-hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCc
Q 002835 308 ELPSSPVPASCCNALLEARRTD------------R-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMST 374 (875)
Q Consensus 308 eLPePLlp~~ly~~~i~a~~~~------------~-~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta 374 (875)
+||+||||+++|+.|+.+.+.. . .+++..++.+|. +||+.|+.+|+||+.||++|+.|++.|+|++
T Consensus 81 eLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lk~li~-~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~ 159 (200)
T cd04408 81 ELPEPVLPFQLYDDFIALAKELQRDSEKAAESPSIVENIIRSLKELLG-RLPVSNYNTLRHLMAHLYRVAERFEDNKMSP 159 (200)
T ss_pred hCCCccCCHHHHHHHHHHHHHhcccccccccccccHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHhhhccCCCH
Confidence 9999999999999999987531 1 468999999886 9999999999999999999999999999999
Q ss_pred cccceeecccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 002835 375 SAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEE 430 (875)
Q Consensus 375 ~NLAi~FgPtLLrp~~s~~~e~e~d~~~~g~~~~qL~~a~~~~~~~~~IVe~LIen 430 (875)
.|||+||||+|||++.... ..+.++....+.+.+|++||.|
T Consensus 160 ~NLAivf~P~Ll~~~~~~~---------------~~~~~~~~~~~q~~~ve~li~~ 200 (200)
T cd04408 160 NNLGIVFGPTLLRPLVGGD---------------VSMICLLDTGYQAQLVEFLISN 200 (200)
T ss_pred hHhhhhhccccCCCCCCCc---------------hHHHHHhccchHHHHHHHHhhC
Confidence 9999999999999973211 0134555667889999999986
No 18
>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolife
Probab=100.00 E-value=1.1e-37 Score=318.52 Aligned_cols=183 Identities=22% Similarity=0.322 Sum_probs=164.3
Q ss_pred cccChhHhhhcCCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCC-CCCCCCCchhhHhhHHHHHhh
Q 002835 230 IGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT-EFSPEEDAHIIADCVKYVIRE 308 (875)
Q Consensus 230 FGvpLe~ll~~~~~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~~-~~~~~~D~h~VAslLK~fLRe 308 (875)
||+||+.++.++..||.+|.+|++||+.+|+.+|||||++|+..+|++|++.|+.+.. .....+|+|+||++||.|||+
T Consensus 1 FGv~L~~l~~~~~~iP~ii~~~i~~l~~~gl~~EGIFR~sGs~~~i~~l~~~~d~~~~~~~~~~~d~h~va~lLK~fLRe 80 (186)
T cd04406 1 FGVELSRLTSEDRSVPLVVEKLINYIEMHGLYTEGIYRKSGSTNKIKELRQGLDTDANSVNLDDYNIHVIASVFKQWLRD 80 (186)
T ss_pred CCCchHHHHHCCCCCCcHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHccCCCCCCcccCCHHHHHHHHHHHHHh
Confidence 9999998887788999999999999999999999999999999999999999998752 334567999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCccccceeecccccC
Q 002835 309 LPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLR 387 (875)
Q Consensus 309 LPePLlp~~ly~~~i~a~~~~~-~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NLAi~FgPtLLr 387 (875)
||+||||+++|+.|+.+....+ .+++..++.+|. +||+.|+.+|+||+.||++|+.|++.|+||+.|||+||||+|||
T Consensus 81 LPePLi~~~~y~~~~~~~~~~~~~~~i~~~~~li~-~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivf~P~ll~ 159 (186)
T cd04406 81 LPNPLMTFELYEEFLRAMGLQERRETVRGVYSVID-QLSRTHLNTLERLIFHLVRIALQEETNRMSANALAIVFAPCILR 159 (186)
T ss_pred CCCccCCHHHHHHHHHHHhcccHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHhCCCccCCChHHHHHHhcccccC
Confidence 9999999999999999998887 889999999885 99999999999999999999999999999999999999999999
Q ss_pred CCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHh
Q 002835 388 PLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLE 429 (875)
Q Consensus 388 p~~s~~~e~e~d~~~~g~~~~qL~~a~~~~~~~~~IVe~LIe 429 (875)
++... + + +.++....+...+|++||-
T Consensus 160 ~p~~~-----d--------~---~~~~~~~~~~~~~~~~~~~ 185 (186)
T cd04406 160 CPDTT-----D--------P---LQSVQDISKTTTCVELIVC 185 (186)
T ss_pred CCCCC-----C--------H---HHHHHHHhhccchhhhhcc
Confidence 86311 1 1 3455667778889999873
No 19
>cd04394 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins. The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2e-37 Score=320.46 Aligned_cols=191 Identities=24% Similarity=0.307 Sum_probs=165.5
Q ss_pred ccccChhHhhhc----CCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCCCCCCCCCchhhHhhHHH
Q 002835 229 VIGRPILLALED----VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHIIADCVKY 304 (875)
Q Consensus 229 vFGvpLe~ll~~----~~~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~~~~~~~~D~h~VAslLK~ 304 (875)
|||+||+.++.. +..||.+|.+|+.||++ |+++|||||++|+..+++++++.+|.|.... ...++|+||++||.
T Consensus 1 vFGv~L~~l~~~~~~~~~~IP~il~~~~~~l~~-~l~~EGIFR~sG~~~~i~~l~~~~d~~~~~~-~~~~~~~vaslLK~ 78 (202)
T cd04394 1 VFGVPLHSLPHSTVPEYGNVPKFLVDACTFLLD-HLSTEGLFRKSGSVVRQKELKAKLEGGEACL-SSALPCDVAGLLKQ 78 (202)
T ss_pred CCCccHHHHHHhhCCCCCCCChHHHHHHHHHHH-CCCCCCeeeCCCCHHHHHHHHHHHcCCCCCc-cccCHHHHHHHHHH
Confidence 799999988753 56899999999999986 6999999999999999999999999987543 35689999999999
Q ss_pred HHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCccccceeecc
Q 002835 305 VIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAP 383 (875)
Q Consensus 305 fLReLPePLlp~~ly~~~i~a~~~~~-~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NLAi~FgP 383 (875)
|||+||+||||+++|+.|+.+....+ .+++.+++.++. +||+.|+.+|+||+.||++|+.|++.|+||+.|||+||||
T Consensus 79 flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivfaP 157 (202)
T cd04394 79 FFRELPEPLLPYDLHEALLKAQELPTDEERKSATLLLTC-LLPDEHVNTLRYFFSFLYDVAQRCSENKMDSSNLAVIFAP 157 (202)
T ss_pred HHhcCCCcCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHhhcc
Confidence 99999999999999999999988877 788888888775 9999999999999999999999999999999999999999
Q ss_pred cccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 002835 384 LLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFG 436 (875)
Q Consensus 384 tLLrp~~s~~~e~e~d~~~~g~~~~qL~~a~~~~~~~~~IVe~LIeny~~IF~ 436 (875)
+|||+.... ..|.. .+......++.+|++||+||+.||.
T Consensus 158 ~L~~~~~~~-------~~~s~-------~~~~~~~~~~~vv~~lI~~~~~i~~ 196 (202)
T cd04394 158 NLFQSEEGG-------EKMSS-------STEKRLRLQAAVVQTLIDNASNIGI 196 (202)
T ss_pred eeecCCCcc-------cccch-------hHHHhHHHHHHHHHHHHHHHHHHcc
Confidence 999987311 01100 0112345578999999999999997
No 20
>cd04398 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins. Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2e-37 Score=317.46 Aligned_cols=184 Identities=25% Similarity=0.397 Sum_probs=165.4
Q ss_pred cccChhHhhhc-CCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCC--CCC----CCCCchhhHhhH
Q 002835 230 IGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT--EFS----PEEDAHIIADCV 302 (875)
Q Consensus 230 FGvpLe~ll~~-~~~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~~--~~~----~~~D~h~VAslL 302 (875)
||+||+.++.. +..||.+|.+|+.||+.+|+++|||||++|+..+++++++.++++.. .+. ...|+|+||++|
T Consensus 1 FG~~L~~~~~~~~~~iP~~v~~~i~~l~~~gl~~eGiFR~~g~~~~i~~l~~~~d~~~~~~~~~~~~~~~~d~~~va~~L 80 (192)
T cd04398 1 FGVPLEDLILREGDNVPNIVYQCIQAIENFGLNLEGIYRLSGNVSRVNKLKELFDKDPLNVLLISPEDYESDIHSVASLL 80 (192)
T ss_pred CCCChHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCCeeecCCcHHHHHHHHHHHccCCccccccccccccccHHHHHHHH
Confidence 99999998865 56799999999999999999999999999999999999999999853 111 245899999999
Q ss_pred HHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCccccceee
Q 002835 303 KYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACM 381 (875)
Q Consensus 303 K~fLReLPePLlp~~ly~~~i~a~~~~~-~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NLAi~F 381 (875)
|.|||+||+||||.++|+.|+.+.+..+ ..++..++.++. +||+.|+.+|+||+.||++|+.+++.|+||+.|||+||
T Consensus 81 K~fLreLp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~li~-~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf 159 (192)
T cd04398 81 KLFFRELPEPLLTKALSREFIEAAKIEDESRRRDALHGLIN-DLPDANYATLRALMFHLARIKEHESVNRMSVNNLAIIW 159 (192)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHhhhCCCHhHHHHHH
Confidence 9999999999999999999999998888 889999999886 99999999999999999999999999999999999999
Q ss_pred cccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 002835 382 APLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIF 435 (875)
Q Consensus 382 gPtLLrp~~s~~~e~e~d~~~~g~~~~qL~~a~~~~~~~~~IVe~LIeny~~IF 435 (875)
||+|||++.. .+......+.++++||+||+.||
T Consensus 160 ~P~l~~~~~~---------------------~~~~~~~~~~~~~~LI~~~~~iF 192 (192)
T cd04398 160 GPTLMNAAPD---------------------NAADMSFQSRVIETLLDNAYQIF 192 (192)
T ss_pred hhhhCCCCcc---------------------chhhHHHHHHHHHHHHHHHHHhC
Confidence 9999998721 01233456789999999999998
No 21
>cd04396 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins. Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.8e-37 Score=324.22 Aligned_cols=187 Identities=22% Similarity=0.280 Sum_probs=160.8
Q ss_pred ccccChhHhhhcC----------------CCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCC----CC
Q 002835 229 VIGRPILLALEDV----------------DGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGK----TE 288 (875)
Q Consensus 229 vFGvpLe~ll~~~----------------~~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~----~~ 288 (875)
||||+|++.+... ..||.+|.+|+.||+.+|+.+|||||++|+..++++|++.|+.+. ..
T Consensus 1 ~fg~~l~~~~~~~~~~~~~~~~~~~~~~~~~IP~iv~~ci~~l~~~gl~~EGIFRvsG~~~~i~~L~~~~d~~~~~~~~~ 80 (225)
T cd04396 1 VFGVSLEESLKYASVAISIVDEDGEQYVYGYIPVVVAKCGVYLKENATEVEGIFRVAGSSKRIRELQLIFSTPPDYGKSF 80 (225)
T ss_pred CCCCcHHHHHHhcchheeeecCCCccccCCCCChHHHHHHHHHHHCCCCCCCceeCCCCHHHHHHHHHHHccCcccCCcC
Confidence 7999999887542 258999999999999999999999999999999999999999863 22
Q ss_pred CCCCCCchhhHhhHHHHHhhCCCCCCChhhHHHHHHHHhc-----------------Cc-hHHHHHHHHHHHhhCChhHH
Q 002835 289 FSPEEDAHIIADCVKYVIRELPSSPVPASCCNALLEARRT-----------------DR-GSRVSAMRTAILETFPEPNR 350 (875)
Q Consensus 289 ~~~~~D~h~VAslLK~fLReLPePLlp~~ly~~~i~a~~~-----------------~~-~eri~~i~~LI~~~LP~~Nr 350 (875)
....+++|+||++||.|||+||+||||+++|+.|+.++.. .+ .+++..++.+|. +||+.|+
T Consensus 81 ~~~~~~vh~va~lLK~fLReLPePLip~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~l~~li~-~LP~~n~ 159 (225)
T cd04396 81 DWDGYTVHDAASVLRRYLNNLPEPLVPLDLYEEFRNPLRKRPRILQYMKGRINEPLNTDIDQAIKEYRDLIT-RLPNLNR 159 (225)
T ss_pred CccCCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHhcchhhhhhccccccccccCHHHHHHHHHHHHH-HCCHHHH
Confidence 2356799999999999999999999999999999987642 23 788999999886 9999999
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCccccceeecccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 002835 351 KLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEE 430 (875)
Q Consensus 351 ~lL~~Ll~~L~~Va~~S~~NkMta~NLAi~FgPtLLrp~~s~~~e~e~d~~~~g~~~~qL~~a~~~~~~~~~IVe~LIen 430 (875)
.+|+||+.||++|++|++.||||+.|||+||||+||+++... | . .......+.+|++||+|
T Consensus 160 ~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP~Ll~~~~~~---------~---------~-~~~~~~~~~~ve~lI~~ 220 (225)
T cd04396 160 QLLLYLLDLLAVFARNSDKNLMTASNLAAIFQPGILSHPDHE---------M---------D-PKEYKLSRLVVEFLIEH 220 (225)
T ss_pred HHHHHHHHHHHHHHHhhccccCChhhhheeeccccCCCCccc---------c---------C-HHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999986311 0 0 11234567899999999
Q ss_pred ccccc
Q 002835 431 YDKIF 435 (875)
Q Consensus 431 y~~IF 435 (875)
+++|.
T Consensus 221 ~~~~~ 225 (225)
T cd04396 221 QDKFL 225 (225)
T ss_pred HHhhC
Confidence 99873
No 22
>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins. ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.2e-37 Score=319.77 Aligned_cols=186 Identities=23% Similarity=0.394 Sum_probs=163.0
Q ss_pred CCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCC-CCCCCCCchhhHhhHHHHHhhCCCCCCChhhH
Q 002835 241 VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT-EFSPEEDAHIIADCVKYVIRELPSSPVPASCC 319 (875)
Q Consensus 241 ~~~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~~-~~~~~~D~h~VAslLK~fLReLPePLlp~~ly 319 (875)
+..||.+|.+|++||+++|+++|||||++|+..+|++|++.|+.|.. .+....|+|+||++||.|||+||+||||+++|
T Consensus 6 ~~~iP~iv~~ci~~l~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~lLK~fLReLPePLi~~~~y 85 (206)
T cd04376 6 ARQVPRLVESCCQHLEKHGLQTVGIFRVGSSKKRVRQLREEFDRGIDVVLDENHSVHDVAALLKEFFRDMPDPLLPRELY 85 (206)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHHHHhCCCccCCHHHH
Confidence 45799999999999999999999999999999999999999999863 45556799999999999999999999999999
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhc-----------ccCCCccccceeecccccCC
Q 002835 320 NALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKN-----------QNRMSTSAVAACMAPLLLRP 388 (875)
Q Consensus 320 ~~~i~a~~~~~~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~-----------~NkMta~NLAi~FgPtLLrp 388 (875)
+.|+.+.....++++..++.+|. +||+.|+.+|+||+.||++|+.|++ .|+||+.|||+||||+|||+
T Consensus 86 ~~~i~~~~~~~~~~~~~l~~li~-~LP~~n~~~L~~L~~~L~~V~~~s~~~~~~~~~~~~~NkM~~~NLAivf~P~Ll~~ 164 (206)
T cd04376 86 TAFIGTALLEPDEQLEALQLLIY-LLPPCNCDTLHRLLKFLHTVAEHAADSIDEDGQEVSGNKMTSLNLATIFGPNLLHK 164 (206)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCHHHHHHHhhccccCC
Confidence 99999988766788999999886 9999999999999999999999986 79999999999999999999
Q ss_pred CcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Q 002835 389 LLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEG 438 (875)
Q Consensus 389 ~~s~~~e~e~d~~~~g~~~~qL~~a~~~~~~~~~IVe~LIeny~~IF~e~ 438 (875)
+..+..+.++ ..+.+......+.||++||+||+.||...
T Consensus 165 ~~~~~~~~~~-----------~~~~~~~~~~~~~vv~~LI~~~~~iF~~~ 203 (206)
T cd04376 165 QKSGEREFVQ-----------ASLRIEESTAIINVVQTMIDNYEELFMVS 203 (206)
T ss_pred CCCcccccch-----------hhhhHHHHHHHHHHHHHHHHhHHHHcCCC
Confidence 7533222111 12344455677889999999999999854
No 23
>cd04378 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases ge
Probab=100.00 E-value=3.9e-37 Score=318.45 Aligned_cols=186 Identities=22% Similarity=0.325 Sum_probs=162.6
Q ss_pred cccChhHhhhc-CCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCC-CCCCCCCchhhHhhHHHHHh
Q 002835 230 IGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT-EFSPEEDAHIIADCVKYVIR 307 (875)
Q Consensus 230 FGvpLe~ll~~-~~~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~~-~~~~~~D~h~VAslLK~fLR 307 (875)
||+||+.++.+ ++.||.+|.+|++||+++|+.+|||||++|+..++++|++.|+.|.. .....+++|+||++||.|||
T Consensus 1 FG~~L~~~~~~~~~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~~~~~~~~~~~~~~~h~va~~LK~fLR 80 (203)
T cd04378 1 FGVDFSQVPRDFPDEVPFIIKKCTSEIENRALGVQGIYRVSGSKARVEKLCQAFENGKDLVELSELSPHDISSVLKLFLR 80 (203)
T ss_pred CCCChHHHHHHCCCCCChHHHHHHHHHHhcCCCCccceeCCCcHHHHHHHHHHHhcCCCccccccCCHHHHHHHHHHHHH
Confidence 99999998876 67899999999999999999999999999999999999999999863 23446799999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHhcC--------------c-hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCC
Q 002835 308 ELPSSPVPASCCNALLEARRTD--------------R-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRM 372 (875)
Q Consensus 308 eLPePLlp~~ly~~~i~a~~~~--------------~-~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkM 372 (875)
+||+||||+++|+.|+.+++.. + ..++..++.+|. +||+.|+.+|+||+.||++|+.|++.|+|
T Consensus 81 eLpePlip~~~y~~~~~~~~~~~~~~e~~~~~~~~~~~~~~i~~l~~ll~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkM 159 (203)
T cd04378 81 QLPEPLILFRLYNDFIALAKEIQRDTEEDKAPNTPIEVNRIIRKLKDLLR-QLPASNYNTLQHLIAHLYRVAEQFEENKM 159 (203)
T ss_pred hCCCccCCHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999987531 1 457889999886 99999999999999999999999999999
Q ss_pred CccccceeecccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 002835 373 STSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEE 430 (875)
Q Consensus 373 ta~NLAi~FgPtLLrp~~s~~~e~e~d~~~~g~~~~qL~~a~~~~~~~~~IVe~LIen 430 (875)
++.|||+||||+|||++... . + . .+.+.....+++.||++||.|
T Consensus 160 ~~~NLaivf~P~Ll~~~~~~-----~------~--~-~~~~l~~~~~q~~~ve~li~~ 203 (203)
T cd04378 160 SPNNLGIVFGPTLIRPRPGD-----A------D--V-SLSSLVDYGYQARLVEFLITN 203 (203)
T ss_pred CHHHhhhhhccccCCCCCCC-----c------c--h-hHHHHHhhhhhHHHHHHHhhC
Confidence 99999999999999998421 0 0 0 133455677888999999986
No 24
>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins. p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.5e-37 Score=313.66 Aligned_cols=160 Identities=26% Similarity=0.485 Sum_probs=150.5
Q ss_pred cccChhHhhhcCCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCC-CC-CCCCCchhhHhhHHHHHh
Q 002835 230 IGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT-EF-SPEEDAHIIADCVKYVIR 307 (875)
Q Consensus 230 FGvpLe~ll~~~~~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~~-~~-~~~~D~h~VAslLK~fLR 307 (875)
||+||+.++..+..||.+|.+|+.||+++|+.+|||||++|+..+++++++.|+.|.. ++ ..++|+|+||++||.|||
T Consensus 1 FG~pL~~~~~~~~~IP~~l~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~fLr 80 (185)
T cd04373 1 FGVPLANVVTSEKPIPIFLEKCVEFIEATGLETEGIYRVSGNKTHLDSLQKQFDQDHNLDLVSKDFTVNAVAGALKSFFS 80 (185)
T ss_pred CCCchHHHHhCCCCCCcHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHhcCCCCCcccccCcHHHHHHHHHHHHh
Confidence 9999999998888999999999999999999999999999999999999999999753 33 235689999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCccccceeeccccc
Q 002835 308 ELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLL 386 (875)
Q Consensus 308 eLPePLlp~~ly~~~i~a~~~~~-~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NLAi~FgPtLL 386 (875)
+||+||||+++|+.|+.+.+..+ .+++..++.+|. +||+.|+.+|+||+.||++|+++++.|+||+.|||+||||+||
T Consensus 81 eLPePlip~~~~~~~~~~~~~~~~~~~i~~l~~li~-~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~NLAi~f~P~L~ 159 (185)
T cd04373 81 ELPDPLIPYSMHLELVEAAKINDREQRLHALKELLK-KFPPENFDVFKYVITHLNKVSQNSKVNLMTSENLSICFWPTLM 159 (185)
T ss_pred cCCchhccHHHHHHHHHHHhCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHcccccCCChHHHHHHHccccC
Confidence 99999999999999999998877 889999999886 9999999999999999999999999999999999999999999
Q ss_pred CCCc
Q 002835 387 RPLL 390 (875)
Q Consensus 387 rp~~ 390 (875)
||..
T Consensus 160 ~~~~ 163 (185)
T cd04373 160 RPDF 163 (185)
T ss_pred CCCC
Confidence 9873
No 25
>cd04409 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1). PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=8.4e-37 Score=317.76 Aligned_cols=186 Identities=23% Similarity=0.351 Sum_probs=159.2
Q ss_pred cccChhHhhhc-CCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCCC-CCCCCCchhhHhhHHHHHh
Q 002835 230 IGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTE-FSPEEDAHIIADCVKYVIR 307 (875)
Q Consensus 230 FGvpLe~ll~~-~~~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~~~-~~~~~D~h~VAslLK~fLR 307 (875)
||+||+.++.+ +++||.+|.+|++||+++|+.+|||||++|+..++++|+..|+.|... ....+|+|+||++||.|||
T Consensus 1 FG~~L~~~~~~~~~~iP~il~~ci~~ie~~gl~~EGIfRvsG~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~~LK~fLR 80 (211)
T cd04409 1 FGADFAQVAKKSPDGIPFIIKKCTSEIESRALCLKGIYRVNGAKSRVEKLCQAFENGKDLVELSELSPHDISNVLKLYLR 80 (211)
T ss_pred CCCChHHHHHhCCCCCCcHHHHHHHHHHHcCCCCCCeeECCCcHHHHHHHHHHHHcCCCccccccCCHHHHHHHHHHHHH
Confidence 99999988866 568999999999999999999999999999999999999999998632 2346799999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHhcCc-----------------------hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHH
Q 002835 308 ELPSSPVPASCCNALLEARRTDR-----------------------GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVA 364 (875)
Q Consensus 308 eLPePLlp~~ly~~~i~a~~~~~-----------------------~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va 364 (875)
+||+||||+++|+.|+.+++... ..++..++.+|. +||++||.+|+||+.||++|+
T Consensus 81 eLPePLi~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~~~~~~~~~l~~li~-~LP~~n~~~L~~L~~~L~~V~ 159 (211)
T cd04409 81 QLPEPLILFRLYNEFIGLAKESQHVNETQEAKKNSDKKWPNMCTELNRILLKSKDLLR-QLPAPNYNTLQFLIVHLHRVS 159 (211)
T ss_pred hCCCcccCHHHHHHHHHHHHhhcccccccccccccccccccchhhHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999875210 123678899886 999999999999999999999
Q ss_pred HhhcccCCCccccceeecccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 002835 365 SSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEE 430 (875)
Q Consensus 365 ~~S~~NkMta~NLAi~FgPtLLrp~~s~~~e~e~d~~~~g~~~~qL~~a~~~~~~~~~IVe~LIen 430 (875)
+|++.|+||+.|||+||||+||||.... ..+ + +..+.....+..||++||.+
T Consensus 160 ~~s~~NkM~~~NLAivf~P~Llrp~~~~-------~~~----~---~~~~~~~~~~~~~ve~li~~ 211 (211)
T cd04409 160 EQAEENKMSASNLGIIFGPTLIRPRPTD-------ATV----S---LSSLVDYPHQARLVELLITY 211 (211)
T ss_pred cccccCCCChHHhhhhccccccCCCCCC-------cch----h---HHHHhhhhhHHHHHHHHhhC
Confidence 9999999999999999999999987311 000 0 23344567789999999974
No 26
>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins. Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=6.7e-37 Score=313.49 Aligned_cols=176 Identities=22% Similarity=0.401 Sum_probs=160.7
Q ss_pred ccccChhHhhhc------CCCCcHHHHHHHHHHHHhC-CccCCeeecCCCHHHHHHHHHHHhcCCC-CC---CCCCCchh
Q 002835 229 VIGRPILLALED------VDGTPSFLEKAIRFIEEHG-VQVEGILRQAAYVDDVHRRIREFEQGKT-EF---SPEEDAHI 297 (875)
Q Consensus 229 vFGvpLe~ll~~------~~~VP~~L~kcI~~Le~~G-l~~EGIFR~sG~~~~V~~Lk~~ld~g~~-~~---~~~~D~h~ 297 (875)
|||+||+.+++. +..||.+|.+|++||+++| +.+|||||++|+...+++|++.++.+.. .+ ....|+|+
T Consensus 1 vFGv~L~~~~~~~~~~~~~~~iP~iv~~~i~~l~~~g~~~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~d~h~ 80 (190)
T cd04400 1 IFGSPLEEAVELSSHKYNGRDLPSVVYRCIEYLDKNRAIYEEGIFRLSGSASVIKQLKERFNTEYDVDLFSSSLYPDVHT 80 (190)
T ss_pred CCCCcHHHHHHHhccccCCCCCChHHHHHHHHHHHcCCcCCCCeeeCCCcHHHHHHHHHHHcCCCCCCccccccccCHHH
Confidence 799999988865 3579999999999999987 7999999999999999999999999842 22 23579999
Q ss_pred hHhhHHHHHhhCCCCCCChhhHHHHHHHHhcC-c-hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCcc
Q 002835 298 IADCVKYVIRELPSSPVPASCCNALLEARRTD-R-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTS 375 (875)
Q Consensus 298 VAslLK~fLReLPePLlp~~ly~~~i~a~~~~-~-~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~ 375 (875)
||++||.|||+||+||||.++|+.|+.+.+.. + .+++..++.+|. +||+.|+.+|++|+.||++|+.|++.|+||++
T Consensus 81 va~lLK~flreLP~PLi~~~~~~~~~~~~~~~~~~~~~~~~l~~li~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~ 159 (190)
T cd04400 81 VAGLLKLYLRELPTLILGGELHNDFKRLVEENHDRSQRALELKDLVS-QLPQANYDLLYVLFSFLRKIIEHSDVNKMNLR 159 (190)
T ss_pred HHHHHHHHHHhCCcccCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHhccccCCChH
Confidence 99999999999999999999999999988876 5 889999999885 89999999999999999999999999999999
Q ss_pred ccceeecccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Q 002835 376 AVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGE 437 (875)
Q Consensus 376 NLAi~FgPtLLrp~~s~~~e~e~d~~~~g~~~~qL~~a~~~~~~~~~IVe~LIeny~~IF~e 437 (875)
|||+||||+|++|. .++..||++|+.||++
T Consensus 160 NLa~vf~P~L~~~~--------------------------------~~~~~~~~~~~~~f~~ 189 (190)
T cd04400 160 NVCIVFSPTLNIPA--------------------------------GIFVLFLTDFDCIFGG 189 (190)
T ss_pred HhhhhcCCCCCCCH--------------------------------HHHHHHHHHHHHHcCC
Confidence 99999999998874 3799999999999985
No 27
>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins. Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=100.00 E-value=1.3e-36 Score=310.42 Aligned_cols=184 Identities=26% Similarity=0.374 Sum_probs=166.6
Q ss_pred cccChhHhhhcCCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCC-CCCCCCCCchhhHhhHHHHHhh
Q 002835 230 IGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGK-TEFSPEEDAHIIADCVKYVIRE 308 (875)
Q Consensus 230 FGvpLe~ll~~~~~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~-~~~~~~~D~h~VAslLK~fLRe 308 (875)
||+||+.++.++..||.+|.+|++||+.+|+.+|||||++|+..+++++++.++.|. ......+|+|+||++||.|||+
T Consensus 1 FG~~L~~~~~~~~~vP~~l~~~~~~l~~~g~~~eGiFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~~va~~LK~flr~ 80 (186)
T cd04377 1 FGVSLSSLTSEDRSVPLVLEKLLEHIEMHGLYTEGIYRKSGSANKIKELRQGLDTDPDSVNLEDYPIHVITSVLKQWLRE 80 (186)
T ss_pred CCCCHHHHHhCCCCCChHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhCCCcccCcccCCHHHHHHHHHHHHHc
Confidence 999999999888899999999999999999999999999999999999999999984 2234567999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCccccceeecccccC
Q 002835 309 LPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLR 387 (875)
Q Consensus 309 LPePLlp~~ly~~~i~a~~~~~-~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NLAi~FgPtLLr 387 (875)
||+||||+++|+.|+.+....+ .+++..++.+|. +||+.|+.+|.||+.||++|+.|++.|+|++.|||+||||+|||
T Consensus 81 LpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~-~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf~P~ll~ 159 (186)
T cd04377 81 LPEPLMTFELYENFLRAMELEEKQERVRALYSVLE-QLPRANLNTLERLIFHLVRVALQEEVNRMSANALAIVFAPCILR 159 (186)
T ss_pred CCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhhHhcC
Confidence 9999999999999999998887 889999999886 99999999999999999999999999999999999999999999
Q ss_pred CCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 002835 388 PLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEE 430 (875)
Q Consensus 388 p~~s~~~e~e~d~~~~g~~~~qL~~a~~~~~~~~~IVe~LIen 430 (875)
++... +. +.+.....+...+|++||+.
T Consensus 160 ~~~~~-------------~~---~~~~~d~~~~~~~~e~li~~ 186 (186)
T cd04377 160 CPDTA-------------DP---LQSLQDVSKTTTCVETLIKE 186 (186)
T ss_pred CCCCC-------------CH---HHHHHHHHHHHHHHHHHhhC
Confidence 87311 11 23566778889999999974
No 28
>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude.
Probab=100.00 E-value=1.8e-36 Score=310.05 Aligned_cols=183 Identities=23% Similarity=0.400 Sum_probs=163.7
Q ss_pred CccccChhHhhhc---CCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCC-CCCCCCCchhhHhhHH
Q 002835 228 PVIGRPILLALED---VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT-EFSPEEDAHIIADCVK 303 (875)
Q Consensus 228 ~vFGvpLe~ll~~---~~~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~~-~~~~~~D~h~VAslLK 303 (875)
++||+||+.++++ .++||.+|..|+.||+++|+.+|||||++|+...++++++.++.|.. .+..++|+|++|++||
T Consensus 1 ~~FGv~L~~l~~~~~~~~~vP~il~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~d~~~~~~~~~~~d~~~va~~lK 80 (189)
T cd04393 1 KVFGVPLQELQQAGQPENGVPAVVRHIVEYLEQHGLEQEGLFRVNGNAETVEWLRQRLDSGEEVDLSKEADVCSAASLLR 80 (189)
T ss_pred CcccccHHHHHhccCCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHHHHcCCCCCCccccCCHHHHHHHHH
Confidence 4899999998876 46799999999999999999999999999999999999999999964 3445689999999999
Q ss_pred HHHhhCCCCCCChhhHHHHHHHHhcC-c-hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCccccceee
Q 002835 304 YVIRELPSSPVPASCCNALLEARRTD-R-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACM 381 (875)
Q Consensus 304 ~fLReLPePLlp~~ly~~~i~a~~~~-~-~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NLAi~F 381 (875)
.|||+||+||||+++|+.|+.+++.. + .+++..++.+|. +||+.|+.+|.||+.||++|+.|++.|+||+.|||+||
T Consensus 81 ~flr~Lp~pLi~~~~~~~l~~~~~~~~~~~~~~~~l~~li~-~Lp~~n~~~L~~l~~~l~~V~~~s~~NkMt~~nLA~vf 159 (189)
T cd04393 81 LFLQELPEGLIPASLQIRLMQLYQDYNGEDEFGRKLRDLLQ-QLPPVNYSLLKFLCHFLSNVASQHHENRMTAENLAAVF 159 (189)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHHHccChHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHcccccCCCHHHhhhhc
Confidence 99999999999999999999987655 3 778899999885 99999999999999999999999999999999999999
Q ss_pred cccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 002835 382 APLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEE 430 (875)
Q Consensus 382 gPtLLrp~~s~~~e~e~d~~~~g~~~~qL~~a~~~~~~~~~IVe~LIen 430 (875)
||+|||.+.. ...+.....+++|++.||+|
T Consensus 160 ~P~l~~~~~~-------------------~~~~~~~~~~~~~~~~li~~ 189 (189)
T cd04393 160 GPDVFHVYTD-------------------VEDMKEQEICSRIMAKLLEN 189 (189)
T ss_pred cCceeCCCCC-------------------cccHHHHHHHHHHHHHHhcC
Confidence 9999998621 11233456788999999987
No 29
>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins. Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switch
Probab=100.00 E-value=2.2e-36 Score=311.25 Aligned_cols=161 Identities=24% Similarity=0.358 Sum_probs=149.5
Q ss_pred cccChhHhhhc-CCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCCC---CCCCCCchhhHhhHHHH
Q 002835 230 IGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTE---FSPEEDAHIIADCVKYV 305 (875)
Q Consensus 230 FGvpLe~ll~~-~~~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~~~---~~~~~D~h~VAslLK~f 305 (875)
||+||+..+.+ +..||.+|.+|++||+.+|+.+|||||++|+..++++|++.||.+... .....|+|+||++||.|
T Consensus 1 FGv~L~~~~~r~~~~IP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK~f 80 (196)
T cd04387 1 FGVKISTVTKRERSKVPYIVRQCVEEVERRGMEEVGIYRISGVATDIQALKAAFDTNNKDVSVMLSEMDVNAIAGTLKLY 80 (196)
T ss_pred CCCCHHHHHHhcCCCCChHHHHHHHHHHHhCCCCCceEEeCCcHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHH
Confidence 99999988876 456999999999999999999999999999999999999999997532 23467999999999999
Q ss_pred HhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCccccceeeccc
Q 002835 306 IRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPL 384 (875)
Q Consensus 306 LReLPePLlp~~ly~~~i~a~~~~~-~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NLAi~FgPt 384 (875)
||+||+||||+++|+.|+.+....+ ..++..++.+|. +||+.|+.+|.||+.||++|+.+++.|+||+.|||+||||+
T Consensus 81 LReLPePLip~~~y~~~~~~~~~~~~~~~~~~l~~ll~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~ 159 (196)
T cd04387 81 FRELPEPLFTDELYPNFAEGIALSDPVAKESCMLNLLL-SLPDPNLVTFLFLLHHLKRVAEREEVNKMSLHNLATVFGPT 159 (196)
T ss_pred HHhCCCccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHccc
Confidence 9999999999999999999998888 888999999885 99999999999999999999999999999999999999999
Q ss_pred ccCCCcC
Q 002835 385 LLRPLLA 391 (875)
Q Consensus 385 LLrp~~s 391 (875)
|||++.+
T Consensus 160 Llr~~~~ 166 (196)
T cd04387 160 LLRPSEK 166 (196)
T ss_pred cCCCCcc
Confidence 9999853
No 30
>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins. Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=7.7e-36 Score=309.58 Aligned_cols=194 Identities=21% Similarity=0.277 Sum_probs=159.3
Q ss_pred cccChhHhhhc---CCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCC--CCC--CCCCchhhHhhH
Q 002835 230 IGRPILLALED---VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT--EFS--PEEDAHIIADCV 302 (875)
Q Consensus 230 FGvpLe~ll~~---~~~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~~--~~~--~~~D~h~VAslL 302 (875)
||+||+.++.+ +..||.+|.+|++||+.+|+.+|||||++|+..++++|++.|+.+.. ++. ...|+|+||++|
T Consensus 1 FGvpL~~l~~re~~~~~IP~iv~~ci~~L~~~gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~l~~~~~~dvh~vA~lL 80 (207)
T cd04379 1 FGVPLSRLVEREGESRDVPIVLQKCVQEIERRGLDVIGLYRLCGSAAKKKELRDAFERNSAAVELSEELYPDINVITGVL 80 (207)
T ss_pred CCCChHHHHhhcCCCCCcChHHHHHHHHHHHcCCCcCCceeeCCcHHHHHHHHHHHcCCCCcCCCChhhcccHHHHHHHH
Confidence 99999999976 35699999999999999999999999999999999999999998742 222 234899999999
Q ss_pred HHHHhhCCCCCCChhhHHHHHHHHhcCc----hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCccccc
Q 002835 303 KYVIRELPSSPVPASCCNALLEARRTDR----GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVA 378 (875)
Q Consensus 303 K~fLReLPePLlp~~ly~~~i~a~~~~~----~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NLA 378 (875)
|.|||+||+||||+++|+.|+.+..... ..++..++.+|. +||+.|+.+|+||+.||+.|+.|++.||||+.|||
T Consensus 81 K~fLReLPePLip~~~y~~~~~~~~~~~~~~~~~~~~~~~~li~-~LP~~n~~~L~~Ll~~L~~V~~~s~~NkMt~~NLA 159 (207)
T cd04379 81 KDYLRELPEPLITPQLYEMVLEALAVALPNDVQTNTHLTLSIID-CLPLSAKATLLLLLDHLSLVLSNSERNKMTPQNLA 159 (207)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhccChhhHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhH
Confidence 9999999999999999999999886543 445677888775 99999999999999999999999999999999999
Q ss_pred eeecccccCCCcCCcccccc-ccccCCCChHHHHHHHHHHHHHHHHHHHHHhhc
Q 002835 379 ACMAPLLLRPLLAGECEIET-DFNVGGDGSAQLLQAAAAANHAQAIVITLLEEY 431 (875)
Q Consensus 379 i~FgPtLLrp~~s~~~e~e~-d~~~~g~~~~qL~~a~~~~~~~~~IVe~LIeny 431 (875)
+||||+||+++......-.+ ...|....+ ........++.+||+-|
T Consensus 160 ivf~P~Ll~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 206 (207)
T cd04379 160 VCFGPVLMFCSQEFSRYGISPTSKMAAVST-------VDFKQHIEVLHYLLQIW 206 (207)
T ss_pred HhhccccCCCCcccccccCCCCccccccch-------hhHHHHHHHHHHHHHhc
Confidence 99999999998643221111 111211111 22345667899999865
No 31
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=8.3e-37 Score=358.85 Aligned_cols=334 Identities=17% Similarity=0.213 Sum_probs=241.7
Q ss_pred EEEEeeeEee----cC----CCCccCceeEEEEEeCCeEEEecCCCCCCCCC----C------ccceeecCCeeecCCCc
Q 002835 84 VFKSGPLFIS----SK----GIGWTSWKKRWFILTHTSLVFFRSDPSAIPQK----G------SEVNLTLGGIDLNNSGS 145 (875)
Q Consensus 84 v~KEGyL~k~----kK----g~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~----g------~e~~i~L~~~~l~~s~s 145 (875)
..|+||||+. ++ |...+.|+.-|.+|.++.|+.|++.....+.. + ..-.+.+.+|.+.-.
T Consensus 923 ~~megWly~~q~~SkkGk~tGssLr~wk~~y~~l~ghsl~L~ss~re~~~~~aas~as~~~st~tts~c~nscltdI~-- 1000 (1973)
T KOG4407|consen 923 SEMEGWLYVLQSSSKKGKATGSSLREWKLSYTGLHGHSLVLNSSAREHNSQSAASLASSSCSTATTSECLNSCLTDIQ-- 1000 (1973)
T ss_pred hhhhcceeeeeecccCCcccCcchhhhhhHHHHhccccceecccccccCcchhhhhcccccccccCccccccchhhhh--
Confidence 5799999972 23 34678899999999999999999877532211 0 011122233322210
Q ss_pred eeeecCCcceEEEEecCCCCceeEEEecchhhHHHHHHHHHhhhccCCCCCCCCcc-------------cC---------
Q 002835 146 VVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAPSTGSATGQ-------------NG--------- 203 (875)
Q Consensus 146 v~~~~~KK~~FvI~~~~~dgrty~fQAdSEeE~~eWI~AI~~ai~~aP~~~~~~~~-------------~~--------- 203 (875)
-....++..|.++. .+-..++|||++.++|-.|++.++.......-...|++. ++
T Consensus 1001 -ysetkrn~vfRLTt--~d~ce~lfqaeDrddmlgG~~ttq~St~~na~~~~V~~r~~a~~s~~~s~~~~~kae~~pst~ 1077 (1973)
T KOG4407|consen 1001 -YSETKRNQVFRLTT--NDLCEGLFQAEDRDDMLGGLSTTQSSTTENAKNRLVMHRYIAKNSQLQSPTANKKAETDPSTV 1077 (1973)
T ss_pred -hhhhhhhhHHHhHH--HHHHhHhhccCccccccchhhhhhhcccccccccccccchhhhcccccCccccchhhcCCCCC
Confidence 00123444455443 334679999999999999999987654311000001000 00
Q ss_pred ------------cccccch-----------------hhccC-chhhhccc------------CC------------CCCc
Q 002835 204 ------------ILKNDKA-----------------EAANG-SVEQLKEK------------PV------------KFPV 229 (875)
Q Consensus 204 ------------if~~~~~-----------------~~~~~-s~~~~~~K------------~~------------k~~v 229 (875)
.|....+ +...+ +...|++- +. +-++
T Consensus 1078 ~ssl~~~at~~~a~s~~~sq~~~p~~~se~k~~p~~d~~~PKsk~~Wkk~~~~~~gsg~g~~~~~~g~~~~~~a~~~~~~ 1157 (1973)
T KOG4407|consen 1078 PSSLQTMATTSSAFSHHSSQAMGPSRDSENKEAPTADATTPKSKRKWKKSKAAKQGSGGGSSGSSSGSQQQGAAGAPQPV 1157 (1973)
T ss_pred cchhHHHHHHhhhccCccccccCcccccccccCCcccCCCCccccchhhhhhhhccCCCCCCCCcccccccccccCcCcc
Confidence 0000000 00000 01112221 01 1248
Q ss_pred cccChhHhhh--cCCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCC------CCCCCCCchhhHhh
Q 002835 230 IGRPILLALE--DVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT------EFSPEEDAHIIADC 301 (875)
Q Consensus 230 FGvpLe~ll~--~~~~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~~------~~~~~~D~h~VAsl 301 (875)
|||+|...-- .++-||.+|..|+..+|.+||.+.||||++|+...|..|++.+|.+.. ..+.+.|+++|.+|
T Consensus 1158 ~GVrl~dCP~~~~n~yVP~iV~~C~~vVEt~Gl~~vGIYRIPGN~AAIs~l~E~ln~~~f~~~v~~~DdrWrDvNVVSSL 1237 (1973)
T KOG4407|consen 1158 LGVRLADCPTGSCNDYVPMIVQACVCVVETYGLDTVGIYRIPGNTAAISALKESLNNRGFLSKVESLDDRWRDVNVVSSL 1237 (1973)
T ss_pred cccccccCCcccccccchHHHHHHHHHHhhcCccceeEEecCCcHHHHHHHHHHHhccccchhhhccccchhhhHHHHHH
Confidence 9999964321 255799999999999999999999999999999999999999999832 22346799999999
Q ss_pred HHHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCcccccee
Q 002835 302 VKYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAAC 380 (875)
Q Consensus 302 LK~fLReLPePLlp~~ly~~~i~a~~~~~-~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NLAi~ 380 (875)
||.|||.|||||||..+|..||++-+..+ -+|+..|+.||. +||.++|.+|++|+.||.+|+.|+++|||-+.||||+
T Consensus 1238 LK~F~RkLPepL~t~~~Y~~FIeAnrk~~~l~Rl~~Lr~l~~-~LPrhhYeTlkfLi~HL~~Vt~nsdvNkMEprNLAi~ 1316 (1973)
T KOG4407|consen 1238 LKMFLRKLPEPLLTDKLYPFFIEANRKSTHLNRLHKLRNLLR-KLPRHHYETLKFLIVHLSEVTKNSDVNKMEPRNLAIM 1316 (1973)
T ss_pred HHHHHHhCCcccccccchhhhhhhcccccHHHHHHHHHHHHH-hCccchHHHHHHHHHHHHHHhcccccccccccceeEE
Confidence 99999999999999999999999999998 899999999886 9999999999999999999999999999999999999
Q ss_pred ecccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCC
Q 002835 381 MAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEGSA 440 (875)
Q Consensus 381 FgPtLLrp~~s~~~e~e~d~~~~g~~~~qL~~a~~~~~~~~~IVe~LIeny~~IF~e~~~ 440 (875)
|||+|+|+++ + +. ..++..+..+++||++||.+|+++|++...
T Consensus 1317 FGPsiVRts~-------D-------nm---~tmVthM~dQckIVEtLI~~~dwfF~esg~ 1359 (1973)
T KOG4407|consen 1317 FGPSIVRTSD-------D-------NM---ATMVTHMSDQCKIVETLIHYNDWFFDESGT 1359 (1973)
T ss_pred eccceeccCC-------c-------cH---HHHhhcchhhhhHHHHHHhhhhheeccCCC
Confidence 9999999872 2 22 334556778999999999999999997533
No 32
>cd04392 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins. The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=8.1e-36 Score=309.72 Aligned_cols=184 Identities=23% Similarity=0.361 Sum_probs=155.5
Q ss_pred cccChhHhhhcCCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCC-CCC-CCCCchhhHhhHHHHHh
Q 002835 230 IGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT-EFS-PEEDAHIIADCVKYVIR 307 (875)
Q Consensus 230 FGvpLe~ll~~~~~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~~-~~~-~~~D~h~VAslLK~fLR 307 (875)
||.||.+ .+++ +|.+||+||++ |+.+|||||++|+..++++|++.+++|.. .+. ..+++|+||++||.|||
T Consensus 1 ~~~~~~~-----~~~~-~v~~~i~~l~~-gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~~~~~~~~h~va~lLK~flR 73 (208)
T cd04392 1 FGAPLTE-----EGIA-QIYQLIEYLEK-NLRVEGLFRKPGNSARQQELRDLLNSGTDLDLESGGFHAHDCATVLKGFLG 73 (208)
T ss_pred CCCCccc-----cccH-HHHHHHHHHHh-CCCCcceeeCCCcHHHHHHHHHHHHcCCCCCcccccCCHHHHHHHHHHHHH
Confidence 7888853 1333 88999999998 99999999999999999999999999864 333 35699999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHhc------------Cc-hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCc
Q 002835 308 ELPSSPVPASCCNALLEARRT------------DR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMST 374 (875)
Q Consensus 308 eLPePLlp~~ly~~~i~a~~~------------~~-~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta 374 (875)
+||+||||.++|+.|+.+.+. .+ +.++..++.++. +||+.||.+|+||+.||++|++|++.|+||+
T Consensus 74 eLPePLi~~~~y~~~~~i~~l~~~~~~~~~~~~~~~~~~i~~l~~ll~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~ 152 (208)
T cd04392 74 ELPEPLLTHAHYPAHLQIADLCQFDEKGNKTSAPDKERLLEALQLLLL-LLPEENRNLLKLILDLLYQTAKHEDKNKMSA 152 (208)
T ss_pred hCCCccCCHHHHHHHHHHHHhhcccccccccCCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHhcccCCCCH
Confidence 999999999999999887642 23 567889998775 9999999999999999999999999999999
Q ss_pred cccceeecccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Q 002835 375 SAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEG 438 (875)
Q Consensus 375 ~NLAi~FgPtLLrp~~s~~~e~e~d~~~~g~~~~qL~~a~~~~~~~~~IVe~LIeny~~IF~e~ 438 (875)
.|||+||||+||||+.. +...++ .....++.||++||+||+.||+..
T Consensus 153 ~NLAivf~P~Ll~~~~~--------------~~~~~~---~~~~~~~~iv~~lI~~~~~iF~~~ 199 (208)
T cd04392 153 DNLALLFTPHLICPRNL--------------TPEDLH---ENAQKLNSIVTFMIKHSQKLFKAP 199 (208)
T ss_pred HHHHHHhCcccCCCCCC--------------CHHHHH---HHHHHHHHHHHHHHHHHHHHcCCc
Confidence 99999999999998621 111111 234567899999999999999854
No 33
>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs. ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.7e-35 Score=301.73 Aligned_cols=179 Identities=22% Similarity=0.393 Sum_probs=161.5
Q ss_pred ccChhHhhhcCCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCCC--C-CCCCCchhhHhhHHHHHh
Q 002835 231 GRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTE--F-SPEEDAHIIADCVKYVIR 307 (875)
Q Consensus 231 GvpLe~ll~~~~~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~~~--~-~~~~D~h~VAslLK~fLR 307 (875)
|.+|+.....+..||.+|.+|+.||+.+|+++|||||++|+...+++|++.|+.+... + ....|+|+||++||.|||
T Consensus 2 ~~~l~~~~~~~~~iP~~v~~~i~~l~~~g~~~eGIFR~sg~~~~i~~L~~~~~~~~~~~~~~~~~~d~~~va~llK~yLr 81 (184)
T cd04385 2 GPALEDQQLTDNDIPVIVDKCIDFITQHGLMSEGIYRKNGKNSSVKKLLEAFRKDARSVQLREGEYTVHDVADVLKRFLR 81 (184)
T ss_pred CccHHHhhhCCCCCChHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHhcCCCcCCCCcccCCHHHHHHHHHHHHH
Confidence 7788877777889999999999999999999999999999999999999999886422 2 346799999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCccccceeeccccc
Q 002835 308 ELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLL 386 (875)
Q Consensus 308 eLPePLlp~~ly~~~i~a~~~~~-~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NLAi~FgPtLL 386 (875)
+||+||||+++|+.|+.+.+..+ .+++..++.+|. +||+.|+.+|++|+.||++|+.|++.|+|++.|||+||||+||
T Consensus 82 eLP~pLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i~-~LP~~n~~~L~~l~~~l~~V~~~~~~NkM~~~nLaiv~~P~ll 160 (184)
T cd04385 82 DLPDPLLTSELHAEWIEAAELENKDERIARYKELIR-RLPPINRATLKVLIGHLYRVQKHSDENQMSVHNLALVFGPTLF 160 (184)
T ss_pred hCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhhhhhccccC
Confidence 99999999999999999998888 899999999886 9999999999999999999999999999999999999999999
Q ss_pred CCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhc
Q 002835 387 RPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEY 431 (875)
Q Consensus 387 rp~~s~~~e~e~d~~~~g~~~~qL~~a~~~~~~~~~IVe~LIeny 431 (875)
|++.. .........+||+.||+||
T Consensus 161 ~~~~~---------------------~~~~~~~~~~v~~~Li~~~ 184 (184)
T cd04385 161 QTDEH---------------------SVGQTSHEVKVIEDLIDNY 184 (184)
T ss_pred CCCcc---------------------chhHHHHHHHHHHHHHhcC
Confidence 98731 1123457888999999998
No 34
>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins. Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4e-35 Score=303.34 Aligned_cols=170 Identities=24% Similarity=0.417 Sum_probs=150.7
Q ss_pred CCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHH-HhcC-----CCCCCC-CCCchhhHhhHHHHHhhCCCCCC
Q 002835 242 DGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIRE-FEQG-----KTEFSP-EEDAHIIADCVKYVIRELPSSPV 314 (875)
Q Consensus 242 ~~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~-ld~g-----~~~~~~-~~D~h~VAslLK~fLReLPePLl 314 (875)
+..|.||.+||+||+.+|+.+|||||++|+..+|++++.. ++.+ ..++.. .+|+|+||++||.|||+||+|||
T Consensus 26 ~~~~~iv~~ci~~le~~gl~~EGIFR~sGs~~~i~~l~~~~~d~~~~~~~~id~~~~~~d~h~va~lLK~fLReLPePLi 105 (203)
T cd04374 26 DIGFKFVRKCIEAVETRGINEQGLYRVVGVNSKVQKLLSLGLDPKTSTPGDVDLDNSEWEIKTITSALKTYLRNLPEPLM 105 (203)
T ss_pred cccHHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCcCCCCccccccccccccHHHHHHHHHHHHHcCCCCcC
Confidence 3567799999999999999999999999999999999875 5654 233333 57999999999999999999999
Q ss_pred ChhhHHHHHHHHhcCc-hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCccccceeecccccCCCcCCc
Q 002835 315 PASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGE 393 (875)
Q Consensus 315 p~~ly~~~i~a~~~~~-~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NLAi~FgPtLLrp~~s~~ 393 (875)
|+++|+.|+.+.+..+ +.|+..++.+|. +||+.|+.+|++|+.||++|+.|++.|||++.|||+||||+|||++.
T Consensus 106 ~~~~y~~~i~~~~~~~~~~ri~~l~~li~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Llr~~~--- 181 (203)
T cd04374 106 TYELHNDFINAAKSENLESRVNAIHSLVH-KLPEKNREMLELLIKHLTNVSDHSKKNLMTVSNLGVVFGPTLLRPQE--- 181 (203)
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHhccccCCCCC---
Confidence 9999999999999888 899999999886 99999999999999999999999999999999999999999999873
Q ss_pred cccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 002835 394 CEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEE 430 (875)
Q Consensus 394 ~e~e~d~~~~g~~~~qL~~a~~~~~~~~~IVe~LIen 430 (875)
++ ++++......+.||++||+|
T Consensus 182 ---~~------------~~~~~~~~~~~~vve~LIeN 203 (203)
T cd04374 182 ---ET------------VAAIMDIKFQNIVVEILIEN 203 (203)
T ss_pred ---cc------------HHHHHHhHHHHHHhhhHhcC
Confidence 11 23455677888999999987
No 35
>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins. MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway
Probab=100.00 E-value=6.1e-35 Score=299.93 Aligned_cols=177 Identities=22% Similarity=0.328 Sum_probs=157.1
Q ss_pred CCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCCC-CCCCCCchhhHhhHHHHHhhCCCCCCChhhH
Q 002835 241 VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTE-FSPEEDAHIIADCVKYVIRELPSSPVPASCC 319 (875)
Q Consensus 241 ~~~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~~~-~~~~~D~h~VAslLK~fLReLPePLlp~~ly 319 (875)
...||.+|.+|+.||+++|+.+|||||++|+..+|+++++.|+.|... .....|+|+||++||.|||+||+||||+++|
T Consensus 14 ~~~IP~~l~~ci~~ie~~gl~~EGIFRv~G~~~~i~~l~~~~~~~~~~~~~~~~d~h~vaslLK~fLReLPePLi~~~~y 93 (193)
T cd04382 14 SPMIPALIVHCVNEIEARGLTEEGLYRVSGSEREVKALKEKFLRGKTVPNLSKVDIHVICGCLKDFLRSLKEPLITFALW 93 (193)
T ss_pred CCCccHHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHHcCCCCcccccCCHHHHHHHHHHHHHhCCCcCCCHHHH
Confidence 457999999999999999999999999999999999999999988532 3445699999999999999999999999999
Q ss_pred HHHHHHHhcCc-hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCccccceeecccccCCCcCCcccccc
Q 002835 320 NALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIET 398 (875)
Q Consensus 320 ~~~i~a~~~~~-~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NLAi~FgPtLLrp~~s~~~e~e~ 398 (875)
+.|+++.+..+ ..++..++.+|. .||+.|+.+|+||+.||++|+. ++.|+||+.|||+||||+||+++...
T Consensus 94 ~~~~~~~~~~~~~~~~~~l~~ll~-~LP~~n~~~L~~L~~~L~~V~~-s~~NkM~~~NLAivf~P~L~~~~~~~------ 165 (193)
T cd04382 94 KEFMEAAEILDEDNSRAALYQAIS-ELPQPNRDTLAFLILHLQRVAQ-SPECKMDINNLARVFGPTIVGYSVPN------ 165 (193)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHhc-cccCCCChHHhhhhhhchhcCCCCCC------
Confidence 99999998888 888999999886 9999999999999999999999 99999999999999999999986311
Q ss_pred ccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 002835 399 DFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKI 434 (875)
Q Consensus 399 d~~~~g~~~~qL~~a~~~~~~~~~IVe~LIeny~~I 434 (875)
.. .++++..+..++.+|+.||++-+..
T Consensus 166 ------~~---~~~~~~~~~~~~~vve~Li~~~~~~ 192 (193)
T cd04382 166 ------PD---PMTILQDTVRQPRVVERLLEIPSDY 192 (193)
T ss_pred ------cc---HHHHHHHhHHHHHHHHHHHhCCccc
Confidence 00 1455666777889999999987654
No 36
>cd04399 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.7e-35 Score=305.58 Aligned_cols=188 Identities=14% Similarity=0.258 Sum_probs=160.6
Q ss_pred cccChhHhhhc-CCCCcHHHHHHHHHHHHhC--CccC----CeeecCCCHHHHHHHHHHHhcCCCCC-----CCCCCchh
Q 002835 230 IGRPILLALED-VDGTPSFLEKAIRFIEEHG--VQVE----GILRQAAYVDDVHRRIREFEQGKTEF-----SPEEDAHI 297 (875)
Q Consensus 230 FGvpLe~ll~~-~~~VP~~L~kcI~~Le~~G--l~~E----GIFR~sG~~~~V~~Lk~~ld~g~~~~-----~~~~D~h~ 297 (875)
|||||+.++.. +..||.+|.+|+.||+.+| +..+ ||||++|+.+.+++|++.|++|.... ...+|+|+
T Consensus 1 FGv~L~~~~~~~~~~VP~vV~~ci~~ie~~~~~l~~~~~~~Gi~r~sg~~~~i~~Lr~~~d~~~~~~~~~~~~~~~dv~~ 80 (212)
T cd04399 1 FGVDLETRCRLDKKVVPLIVSAILSYLDQLYPDLINDEVRRNVWTDPVSLKETHQLRNLLNKPKKPDKEVIILKKFEPST 80 (212)
T ss_pred CCCcHHHHHhhcCCCCCHHHHHHHHHHHHhCccccCCcceeeEEEecCcHHHHHHHHHHHcCCCCcchhhhccccCCHHH
Confidence 99999988876 4579999999999999975 3333 99999999999999999999985321 34679999
Q ss_pred hHhhHHHHHhhCCCCCCChhhHHHHHHHHhc------Cc-hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhccc
Q 002835 298 IADCVKYVIRELPSSPVPASCCNALLEARRT------DR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQN 370 (875)
Q Consensus 298 VAslLK~fLReLPePLlp~~ly~~~i~a~~~------~~-~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~N 370 (875)
||++||.|||+||+||||+++|+.|+.+... .+ ++|+..++.+|. +||.+|+.+|++|+.||.+|+.++..|
T Consensus 81 va~~LK~ylReLPepL~~~~~y~~~~~~~~~~~~~~~~~~~~r~~~l~~~l~-~LP~~n~~~L~~li~hL~rv~~~~~~~ 159 (212)
T cd04399 81 VASVLKLYLLELPDSLIPHDIYDLIRSLYSAYPPSQEDSDTARIQGLQSTLS-QLPKSHIATLDAIITHFYRLIEITKMG 159 (212)
T ss_pred HHHHHHHHHHHCCCccCCHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999887532 34 899999999886 999999999999999999999988666
Q ss_pred ---CCCccccceeecccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Q 002835 371 ---RMSTSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGE 437 (875)
Q Consensus 371 ---kMta~NLAi~FgPtLLrp~~s~~~e~e~d~~~~g~~~~qL~~a~~~~~~~~~IVe~LIeny~~IF~e 437 (875)
+|++.|||+||||+|+||..... . .....+++.+|++||+||++||++
T Consensus 160 ~~~kM~~~nLa~vfgp~llr~~~~~~------~-------------~~~~~~~~~~~e~Li~~~~~iF~~ 210 (212)
T cd04399 160 ESEEEYADKLATSLSREILRPIIESL------L-------------TIGDKHGYKFFRDLLTHKDQIFSE 210 (212)
T ss_pred cccccCHHHHHHHhhhhhcCCCcccc------c-------------ccccHHHHHHHHHHHHhHHHhccc
Confidence 59999999999999999873110 0 012356779999999999999985
No 37
>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4e-35 Score=299.86 Aligned_cols=178 Identities=22% Similarity=0.271 Sum_probs=152.9
Q ss_pred cccChhHhhhc------CCCCcHHHHHHHHHHHH-hCCccCCeeecCCCHHHHHHHHHHHhcCCCCCCCCCCchhhHhhH
Q 002835 230 IGRPILLALED------VDGTPSFLEKAIRFIEE-HGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHIIADCV 302 (875)
Q Consensus 230 FGvpLe~ll~~------~~~VP~~L~kcI~~Le~-~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~~~~~~~~D~h~VAslL 302 (875)
||+||++++.+ +..||.+|..|+++|.+ +|+.+|||||++|+..+++++++.++.|...+....|+|+||++|
T Consensus 1 FG~~L~~~~~r~~~~~~~~~iP~il~~~i~~l~~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~d~h~va~lL 80 (187)
T cd04389 1 FGSSLEEIMDRQKEKYPELKLPWILTFLSEKVLALGGFQTEGIFRVPGDIDEVNELKLRVDQWDYPLSGLEDPHVPASLL 80 (187)
T ss_pred CCCCHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCCcCCCeeeCCCCHHHHHHHHHHHhcCCCCccccCCHHHHHHHH
Confidence 99999999855 23599999999999865 799999999999999999999999999986666667999999999
Q ss_pred HHHHhhCCCCCCChhhHHHHHHHHhcCchHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhh--cccCCCcccccee
Q 002835 303 KYVIRELPSSPVPASCCNALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSK--NQNRMSTSAVAAC 380 (875)
Q Consensus 303 K~fLReLPePLlp~~ly~~~i~a~~~~~~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S--~~NkMta~NLAi~ 380 (875)
|.|||+||+||||+++|+.|+.+.. ....++.+|. +||+.|+.+|.||+.||+.|+.++ +.||||+.|||+|
T Consensus 81 K~fLReLpePli~~~~~~~~i~~~~-----~~~~~~~li~-~LP~~n~~~L~~l~~~L~~v~~~~~~~~NkM~~~NLAiv 154 (187)
T cd04389 81 KLWLRELEEPLIPDALYQQCISASE-----DPDKAVEIVQ-KLPIINRLVLCYLINFLQVFAQPENVAHTKMDVSNLAMV 154 (187)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHhhc-----CHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHH
Confidence 9999999999999999999998743 2335667675 999999999999999999999765 7899999999999
Q ss_pred ecccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 002835 381 MAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEE 430 (875)
Q Consensus 381 FgPtLLrp~~s~~~e~e~d~~~~g~~~~qL~~a~~~~~~~~~IVe~LIen 430 (875)
|||+|||++. ++ . +..+..+.+...+|+.||+|
T Consensus 155 f~P~l~~~~~------~~--------~---~~~~~~~~~~~~~~~~lI~~ 187 (187)
T cd04389 155 FAPNILRCTS------DD--------P---RVIFENTRKEMSFLRTLIEH 187 (187)
T ss_pred HccccCCCCC------CC--------H---HHHHHccHHHHHHHHHHhcC
Confidence 9999999863 11 1 22334556788999999987
No 38
>cd04388 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase). This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell p
Probab=100.00 E-value=1.6e-34 Score=297.24 Aligned_cols=174 Identities=20% Similarity=0.272 Sum_probs=148.2
Q ss_pred HhhhcCCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCC-CCCCCCCCchhhHhhHHHHHhhCCCCCC
Q 002835 236 LALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGK-TEFSPEEDAHIIADCVKYVIRELPSSPV 314 (875)
Q Consensus 236 ~ll~~~~~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~-~~~~~~~D~h~VAslLK~fLReLPePLl 314 (875)
+.....+.+|.+|.+||++|+++|+++|||||++|+.. +.+|++.|+.+. ......+|+|+||++||.|||+||+|||
T Consensus 7 ~~~~~~~~~P~iv~~ci~~IE~~GL~~eGIYRvsgs~~-~~~lk~~~d~~~~~~d~~~~dv~~va~~LK~ylReLPePLi 85 (200)
T cd04388 7 EQFSPPDVAPPLLIKLVEAIEKKGLESSTLYRTQSSSS-LTELRQILDCDAASVDLEQFDVAALADALKRYLLDLPNPVI 85 (200)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHhCCCCCceeeCCCccH-HHHHHHHHhcCCCCCCcccccHHHHHHHHHHHHHhCCCccC
Confidence 34444578999999999999999999999999999765 788999999863 2223467999999999999999999999
Q ss_pred ChhhHHHHHHHHh-cCc-hHHHHHHHHHHH-hhCChhHHHHHHHHHHHHHHHHHhhcccCCCccccceeecccccCCCcC
Q 002835 315 PASCCNALLEARR-TDR-GSRVSAMRTAIL-ETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLA 391 (875)
Q Consensus 315 p~~ly~~~i~a~~-~~~-~eri~~i~~LI~-~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NLAi~FgPtLLrp~~s 391 (875)
|+.+|+.|+.+++ ..+ ++++..++.+|. ..||+.|+.+|+|||.||.+|+.|+..|+||+.|||+||||+|||++..
T Consensus 86 p~~~y~~fi~~~~~~~~~~~~~~~l~~li~~~~LP~~n~~tL~~Li~HL~rV~~~s~~NkM~~~NLAiVFgPtL~r~~~~ 165 (200)
T cd04388 86 PAPVYSEMISRAQEVQSSDEYAQLLRKLIRSPNLPHQYWLTLQYLLKHFFRLCQSSSKNLLSARALAEIFSPLLFRFQPA 165 (200)
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHhHHHhhhhhcCCCcc
Confidence 9999999999875 344 788999999773 2799999999999999999999999999999999999999999999732
Q ss_pred CccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhc
Q 002835 392 GECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEY 431 (875)
Q Consensus 392 ~~~e~e~d~~~~g~~~~qL~~a~~~~~~~~~IVe~LIeny 431 (875)
. .....+...+|++||.++
T Consensus 166 ~---------------------~~~~~~~~~vvE~Li~~~ 184 (200)
T cd04388 166 S---------------------SDSPEFHIRIIEVLITSE 184 (200)
T ss_pred c---------------------ccchhhHHHHHHHHHHHH
Confidence 1 012346788999999853
No 39
>KOG1450 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=99.98 E-value=1.2e-31 Score=308.88 Aligned_cols=316 Identities=22% Similarity=0.304 Sum_probs=232.0
Q ss_pred cCceeEEEEEeCCeEEEecCCCCCCCCC---CccceeecCCeeecCCCce--eeecCCcceEEEEecCCCCceeEEEecc
Q 002835 100 TSWKKRWFILTHTSLVFFRSDPSAIPQK---GSEVNLTLGGIDLNNSGSV--VVKADKKLLTVLFPDGRDGRAFTLKAES 174 (875)
Q Consensus 100 ksWkKRWfVL~~~sL~yYKd~k~~~p~~---g~e~~i~L~~~~l~~s~sv--~~~~~KK~~FvI~~~~~dgrty~fQAdS 174 (875)
..|...|..+.+..++||.+.+.....+ .+.-........+..+... .....++ +.+......+..|+++-.+
T Consensus 271 ~~~~~~~~~~t~~~~~~~~~~~~~~~s~~~~~~~~~~~~~sps~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~n 348 (650)
T KOG1450|consen 271 TVWETSTDALTGNPLYYYSDTGSTTWSGHHSPPEKAEIAQSPSLSPAMVSASKNKSTRK--NTLWLTTNRTSKVLNRSHN 348 (650)
T ss_pred cccccchhhcccccceeecccCcccccCCCCccccccCCCCcccchhhhccccccCCcc--ceeeeeecCCceeeecCCC
Confidence 4599999999999999999876543221 1111111111111111100 1112233 3444445567789999999
Q ss_pred hhhHHHHHHHHHhhhccCCCCCCC--Ccc----cCc--------------------cccc-chh---hc-----------
Q 002835 175 LEDLYDWKTALENALAQAPSTGSA--TGQ----NGI--------------------LKND-KAE---AA----------- 213 (875)
Q Consensus 175 EeE~~eWI~AI~~ai~~aP~~~~~--~~~----~~i--------------------f~~~-~~~---~~----------- 213 (875)
+.....|..+....+...++++.+ .|. .+. +... ++. +.
T Consensus 349 et~~~d~~~~~~~~~~~~~~~~s~~s~g~~~~~~P~s~~~~~~~~~~~~~~sp~ss~p~~~~ss~ist~~~~~~~~~~~~ 428 (650)
T KOG1450|consen 349 ETSFEDWSSNLPEVINELPNSASPNSQGDLESTLPESDSPESHTSEPEEDVSPVSSKPLEGLSSPISTTLGPECHEQQDP 428 (650)
T ss_pred CccccchhhcchhhhhccCCCCCCCCCCCCCCCCCCCccccccccCcccccCcccccccccccccceecCCcccccccch
Confidence 999999999998887633332111 010 000 0000 000 00
Q ss_pred ----------cCchhhhccc--CCCCCccccChhHhhhc-CCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHH
Q 002835 214 ----------NGSVEQLKEK--PVKFPVIGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIR 280 (875)
Q Consensus 214 ----------~~s~~~~~~K--~~k~~vFGvpLe~ll~~-~~~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~ 280 (875)
++-++-.+++ +....|||++|+.+|++ +..||.||.+|+..|+..|++.+||||++|+...|++|+.
T Consensus 429 ~~~l~~~~s~rp~v~s~~~~g~~k~~~vFGs~Lealc~rE~~~vP~~V~~c~~~IE~~GLd~~GiYRVsgnl~~Vnklr~ 508 (650)
T KOG1450|consen 429 QKKLTKNFSTRPIVQSSREPGKPKFDKVFGSPLEALCQRENGLVPKIVRLCIEHIEKFGLDSDGIYRVSGNLASVNKLRE 508 (650)
T ss_pred HHHHHHhhhccchhhhccccCccccCcccCccHHHHhhccCCCcchHHHHHHHHHhhhcccCCceeeecchHHHHHHHHH
Confidence 0001112223 44589999999999876 6779999999999999999999999999999999999999
Q ss_pred HHhcCC-CCC--CCCCCchhhHhhHHHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhhCChhHHHHHHHH
Q 002835 281 EFEQGK-TEF--SPEEDAHIIADCVKYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRI 356 (875)
Q Consensus 281 ~ld~g~-~~~--~~~~D~h~VAslLK~fLReLPePLlp~~ly~~~i~a~~~~~-~eri~~i~~LI~~~LP~~Nr~lL~~L 356 (875)
.+|... ..+ ..+.|+|.|+++||.|||+||+||+|..++..|..+..... ..|...++.+|. .||.+|+.||+||
T Consensus 509 ~~d~d~~l~l~~~~~~dihai~galK~ffreLpdpL~p~~l~~~f~~a~~~~~~~~r~~~~~~li~-~lP~~n~~Tlr~l 587 (650)
T KOG1450|consen 509 QSDQDNSLDLADDRWDDIHAITGALKTFFRELPDPLFPKALSKDFTVALQGELSHTRVDKVEELIG-LLPDANYQTLRYL 587 (650)
T ss_pred hcCccccccccccchhHHHHHHHHHHHHHHhcCCcccChhHhHHHHHHhcccchhhHHHHHHHHHh-hCCCcchhHHHHH
Confidence 999542 233 23469999999999999999999999999999999999988 899999999996 9999999999999
Q ss_pred HHHHHHHHHhhcccCCCccccceeecccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 002835 357 LMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFG 436 (875)
Q Consensus 357 l~~L~~Va~~S~~NkMta~NLAi~FgPtLLrp~~s~~~e~e~d~~~~g~~~~qL~~a~~~~~~~~~IVe~LIeny~~IF~ 436 (875)
+.||.+|..|++.|+|+.+||||||||+|+.+... + + ..+..+..+.+||+.||+++..+|+
T Consensus 588 v~HL~rv~shs~kNrMs~~NLaIVfgpTl~~~~~~------~-----~-------~~a~~~~~~~~ivq~lle~~~~~f~ 649 (650)
T KOG1450|consen 588 VRHLRRVLSHSDKNRMSRHNLAIVFGPTLIKPEQE------T-----S-------SEAIHSTYQSQIVQLLLENVSSAFG 649 (650)
T ss_pred HHHHHHHHhccccccccccceEEEecccccccccc------c-----c-------chhhHHhHHHHHHHHHHHhhHhhcc
Confidence 99999999999999999999999999999997531 1 0 1234556788999999999999997
No 40
>KOG4270 consensus GTPase-activator protein [Signal transduction mechanisms]
Probab=99.97 E-value=7.4e-30 Score=293.52 Aligned_cols=198 Identities=21% Similarity=0.253 Sum_probs=169.1
Q ss_pred CCCCccccChhHhhhc----CCCCcHHHHHHHH-HHHH-hCCccCCeeecCCCHHHHHHHHHHHhcCCCCCCCCCCchhh
Q 002835 225 VKFPVIGRPILLALED----VDGTPSFLEKAIR-FIEE-HGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHII 298 (875)
Q Consensus 225 ~k~~vFGvpLe~ll~~----~~~VP~~L~kcI~-~Le~-~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~~~~~~~~D~h~V 298 (875)
....||||+++.+... ++.||.++..+.. .|+. .|++.|||||++|...+++.|++.||.|.+....+.|||+|
T Consensus 142 ~~~~vfgv~~~s~Q~s~~~~~n~vp~i~~l~~~~~l~~e~Gl~eEGlFRi~~~~sk~e~lr~~ld~g~v~~~~~iDvH~~ 221 (577)
T KOG4270|consen 142 ASETVFGVSTEAMQLSYDPRGNFVPLILHLLQSGRLLLEGGLKEEGLFRINGEASKVERLREALDCGVVPDQLYIDVHCL 221 (577)
T ss_pred chhhhhcchHHhhhcccccCCCcchhhhHhhhhhhhhhhcCccccceeccCCCchHHHHHHHHHcCCcccccccCCHHHH
Confidence 3467999999866543 4457999988888 6665 78999999999999999999999999996443336899999
Q ss_pred HhhHHHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCcccc
Q 002835 299 ADCVKYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAV 377 (875)
Q Consensus 299 AslLK~fLReLPePLlp~~ly~~~i~a~~~~~-~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NL 377 (875)
|++||.|||+||+|+|++.+|++|+.++...+ ++++..++.++. +||+.|+.+|+|+|+||+.|++++++||||++||
T Consensus 222 agllKayLRELPepvl~~nL~~e~~qv~~~~~e~~~~q~lr~~~~-~LPp~n~slL~yli~flA~v~~~~~vNKMs~~Nl 300 (577)
T KOG4270|consen 222 AGLLKAYLRELPEPVLTFNLYKEWTQVQNCENEDEKVQLLRQCLQ-KLPPTNYSLLRYLIRFLADVVEKEHVNKMSARNL 300 (577)
T ss_pred HHHHHHHHHhCCCcCCCcccCHHHHHHHhccCHHHHHHHHHHHHH-hCCcchHHHHHHHHHHHHHHHHHhhhcccchhhc
Confidence 99999999999999999999999999998888 899999999775 9999999999999999999999999999999999
Q ss_pred ceeecccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Q 002835 378 AACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEG 438 (875)
Q Consensus 378 Ai~FgPtLLrp~~s~~~e~e~d~~~~g~~~~qL~~a~~~~~~~~~IVe~LIeny~~IF~e~ 438 (875)
||||||+|+|+..+ ...++.+....+.+..+|+.+|+++++.|...
T Consensus 301 AiV~gPNl~~~~~p---------------~~~l~~avqvs~~~~~lie~~l~~~~~~~~g~ 346 (577)
T KOG4270|consen 301 AIVFGPNLLWMKDP---------------LTALMYAVQVSNFLKGLIEKTLEERDTSFPGE 346 (577)
T ss_pred eeEecCCccccCCh---------------HHHHHHHHHHHHHHHHHHHHHHHhhhccCCcc
Confidence 99999999998731 22345555566666777777777888777744
No 41
>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases. GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.
Probab=99.97 E-value=1.1e-30 Score=262.27 Aligned_cols=169 Identities=29% Similarity=0.476 Sum_probs=153.9
Q ss_pred CCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCCCC--CCCCCchhhHhhHHHHHhhCCCCCCChhhHH
Q 002835 243 GTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEF--SPEEDAHIIADCVKYVIRELPSSPVPASCCN 320 (875)
Q Consensus 243 ~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~~~~--~~~~D~h~VAslLK~fLReLPePLlp~~ly~ 320 (875)
.||.+|..|+.||+.+|++++||||++|+..+++++++.++.+.... ...+|+|++|++||.|||+||+||||.+.|+
T Consensus 2 ~vP~~l~~~~~~l~~~g~~~egiFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~Lr~Lp~pli~~~~~~ 81 (174)
T smart00324 2 PIPIIVEKCIEYLEKRGLDTEGIYRVSGSKSRVKELREAFDSGPDPDLDLSEYDVHDVAGLLKLFLRELPEPLIPYELYE 81 (174)
T ss_pred CCChHHHHHHHHHHHcCCCccceeecCCcHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHHHhCCCccCCHHHHH
Confidence 58999999999999999999999999999999999999999986543 5678999999999999999999999999999
Q ss_pred HHHHHHhcCc-hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCccccceeecccccCCCcCCccccccc
Q 002835 321 ALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETD 399 (875)
Q Consensus 321 ~~i~a~~~~~-~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NLAi~FgPtLLrp~~s~~~e~e~d 399 (875)
.|+.++...+ .+++..++.++. +||+.|+.+|.+|+.||+.|+.|++.|+|++.|||+||||+|||++...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~-~Lp~~~~~~L~~l~~~l~~i~~~~~~n~M~~~nLa~~f~P~l~~~~~~~------- 153 (174)
T smart00324 82 EFIEAAKVEDETERLRALRELIS-LLPPANRATLRYLLAHLNRVAEHSEENKMTARNLAIVFGPTLLRPPDGE------- 153 (174)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhcccCCCCccc-------
Confidence 9999998777 889999999885 9999999999999999999999999999999999999999999987311
Q ss_pred cccCCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 002835 400 FNVGGDGSAQLLQAAAAANHAQAIVITLLEE 430 (875)
Q Consensus 400 ~~~~g~~~~qL~~a~~~~~~~~~IVe~LIen 430 (875)
+.......+.+.+|++||+|
T Consensus 154 -----------~~~~~~~~~~~~~i~~li~~ 173 (174)
T smart00324 154 -----------VASLKDIRHQNTVVETLIEN 173 (174)
T ss_pred -----------HHHHHHHHHHHHHHHHHHhc
Confidence 11245567889999999987
No 42
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=99.97 E-value=2.3e-31 Score=305.90 Aligned_cols=266 Identities=22% Similarity=0.341 Sum_probs=215.9
Q ss_pred ccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecCCCCceeEEEecchhhH
Q 002835 99 WTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDL 178 (875)
Q Consensus 99 ~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~~dgrty~fQAdSEeE~ 178 (875)
.-.|++-||.+.+.+|.++-..... .+ ....|+...-....+......|+-.|+++.+ |||+|++..+.-++
T Consensus 628 ~~~~r~gwfsl~gssl~~~~~~~~v---e~--d~~hlrrlqElsi~s~~~n~~K~~~l~lve~---grTLYI~g~~rldf 699 (1186)
T KOG1117|consen 628 LDQARKGWFSLDGSSLHFCLQMQPV---EE--DRMHLRRLQELSISSMVQNGEKLDVLVLVEK---GRTLYIQGETRLDF 699 (1186)
T ss_pred hhhccccceecCCCeeEEecCCCcC---ch--hHHHHHHHHHHhhhhccCCcccccceEEEee---ccEEEEecCCcchH
Confidence 4569999999999999987753311 11 1111221111111111233457777888877 99999999999999
Q ss_pred HHHHHHHHhhhccCCCCCCCCcccCcccccchhhccCchhhhcccCCCCCccccChhHhhhcCCCCcHHHHHHHHHHHHh
Q 002835 179 YDWKTALENALAQAPSTGSATGQNGILKNDKAEAANGSVEQLKEKPVKFPVIGRPILLALEDVDGTPSFLEKAIRFIEEH 258 (875)
Q Consensus 179 ~eWI~AI~~ai~~aP~~~~~~~~~~if~~~~~~~~~~s~~~~~~K~~k~~vFGvpLe~ll~~~~~VP~~L~kcI~~Le~~ 258 (875)
-.|..||.+++.. + |.-|+++.-..+.||.||..||.|+.++
T Consensus 700 t~W~~AIekaa~~-~-------------------------------------gt~LqeqqLs~~dIPvIVd~CI~FVTqy 741 (1186)
T KOG1117|consen 700 TVWHTAIEKAAGT-D-------------------------------------GTALQEQQLSKNDIPVIVDSCIAFVTQY 741 (1186)
T ss_pred HHHHHHHHHHhcC-C-------------------------------------cchhhhhhccCCCCcEehHHHHHHHHHh
Confidence 9999999998841 1 1112233333568999999999999999
Q ss_pred CCccCCeeecCCCHHHHHHHHHHHhcCCCCC---CCCCCchhhHhhHHHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHH
Q 002835 259 GVQVEGILRQAAYVDDVHRRIREFEQGKTEF---SPEEDAHIIADCVKYVIRELPSSPVPASCCNALLEARRTDR-GSRV 334 (875)
Q Consensus 259 Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~~~~---~~~~D~h~VAslLK~fLReLPePLlp~~ly~~~i~a~~~~~-~eri 334 (875)
|+..|||||.+|...++.+|...|-.+...+ ..+.-+.+|+++||.|||+|++||+|.++|..|++++...+ ++|+
T Consensus 742 Gl~cegIYrknG~~~~~~~lLeslr~Dars~~lregeh~vedVtdvLk~FlrdlddpLft~~~~~~w~eaae~~d~~Er~ 821 (1186)
T KOG1117|consen 742 GLGCEGIYRKNGDPLHISRLLESLRKDARSVKLREGEHQVEDVTDVLKRFLRDLDDPLFTKELYPYWIEAAETQDDKERI 821 (1186)
T ss_pred CccceeeeccCCchHHHHHHHHHHhhccceeeccCCcchHHHHHHHHHHHHHhCCccccchhhhhhHHHhhhccchHHHH
Confidence 9999999999999999999999998875332 23557999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCccccceeecccccCCCcCCccccccccccCCCChHHHHHHH
Q 002835 335 SAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAA 414 (875)
Q Consensus 335 ~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NLAi~FgPtLLrp~~s~~~e~e~d~~~~g~~~~qL~~a~ 414 (875)
..+..+|. .||..||.+|+.||.||++|..+++.|+|+++|||.||||+||... |.
T Consensus 822 ~rY~~lI~-~lp~VnRaTLkalIgHLy~Vqk~s~~N~mnvhNLAlVFa~sLFqTd--------------gq--------- 877 (1186)
T KOG1117|consen 822 KRYGALIR-SLPGVNRATLKALIGHLYRVQKCSEINQMNVHNLALVFAPSLFQTD--------------GQ--------- 877 (1186)
T ss_pred HHHHHHHh-hcccccHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhheecC--------------CC---------
Confidence 99999997 9999999999999999999999999999999999999999999864 21
Q ss_pred HHHHHHHHHHHHHHhhcccccC
Q 002835 415 AAANHAQAIVITLLEEYDKIFG 436 (875)
Q Consensus 415 ~~~~~~~~IVe~LIeny~~IF~ 436 (875)
..+..+|++-||.+|..||.
T Consensus 878 --dehevnVledLingYvvVF~ 897 (1186)
T KOG1117|consen 878 --DEHEVNVLEDLINGYVVVFE 897 (1186)
T ss_pred --chhhhhHHHHHhcCceEEEE
Confidence 23667899999999999998
No 43
>KOG2200 consensus Tumour suppressor protein p122-RhoGAP/DLC1 [Signal transduction mechanisms]
Probab=99.97 E-value=3.3e-30 Score=289.33 Aligned_cols=206 Identities=22% Similarity=0.328 Sum_probs=171.8
Q ss_pred CCCccccChhHhhhc-CCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCC---CCCCCCCchhhHhh
Q 002835 226 KFPVIGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT---EFSPEEDAHIIADC 301 (875)
Q Consensus 226 k~~vFGvpLe~ll~~-~~~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~~---~~~~~~D~h~VAsl 301 (875)
.+.||||||..++++ +-.+|.+|.+++.||+++|++++||||++|..++|+.|++.++..-. ...+....|++|.+
T Consensus 297 d~~vFGVPL~vll~rtG~~lP~~iQq~m~~lr~~~Le~vGifRksGvksRIk~Lrq~lE~~~~~~~~~~d~~~~~DvAdl 376 (674)
T KOG2200|consen 297 DGGVFGVPLTVLLQRTGQPLPLSIQQAMRYLRERGLETVGIFRKSGVKSRIKNLRQMLEAKFYNGEFNWDSQSAHDVADL 376 (674)
T ss_pred CCceeecCceeeeccCCCcCcHHHHHHHHHHHHhCccccceeecccHHHHHHHHHHHHhhcccCcccccchhhhhHHHHH
Confidence 478999999998887 56699999999999999999999999999999999999999887421 22335579999999
Q ss_pred HHHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCcccccee
Q 002835 302 VKYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAAC 380 (875)
Q Consensus 302 LK~fLReLPePLlp~~ly~~~i~a~~~~~-~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NLAi~ 380 (875)
||.|||+||+||||.++.+.|+.++.... .+|+++++.+|. .||.+||.+|+.|+.||.+|+.+++.|+||+.|||+|
T Consensus 377 LKqffRdLPePL~t~k~~~aF~~i~~~~pkkqrlqAl~~ail-lLPDeNReaLktLL~FL~~V~an~e~N~MT~~Nlsvc 455 (674)
T KOG2200|consen 377 LKQFFRDLPEPLFTVKYSEAFAQIYQLVPKKQRLQALQLAIL-LLPDENREALKTLLEFLNDVIANEEENQMTLMNLSVC 455 (674)
T ss_pred HHHHHHhCCcccchhhHHHHHHHHHhcCcHHHHHHHHHHHHH-hCCcccHHHHHHHHHHHHHHHHhHhhcccchhhhhhh
Confidence 99999999999999999999999999999 999999999998 9999999999999999999999999999999999999
Q ss_pred ecccccCCCcCCc---cccccccccCCC-ChHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 002835 381 MAPLLLRPLLAGE---CEIETDFNVGGD-GSAQLLQAAAAANHAQAIVITLLEEYDKIFG 436 (875)
Q Consensus 381 FgPtLLrp~~s~~---~e~e~d~~~~g~-~~~qL~~a~~~~~~~~~IVe~LIeny~~IF~ 436 (875)
|||+||....... +.+......-|. ....+ ..+.-+.+++..||..+..+|.
T Consensus 456 mAPsLF~l~~~~~d~spr~~~~k~~~g~p~~kel----~~a~aaa~~l~~mI~y~k~Lf~ 511 (674)
T KOG2200|consen 456 MAPSLFHLNALKLDSSPRVRQKKSETGKPDQKEL----NEALAAAQGLAHMIKYQKLLFT 511 (674)
T ss_pred hcchHHhhccCCCCCCccccccccccCCCchHHH----HHHHHHHHHHHHHHHHHHHHhh
Confidence 9999998543211 000000000011 11122 3344577899999999999998
No 44
>cd04380 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins. OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPas
Probab=99.96 E-value=1.2e-29 Score=265.69 Aligned_cols=142 Identities=17% Similarity=0.313 Sum_probs=128.2
Q ss_pred CCcHHHHHHHHHHHHhCCccCCeeecCCCHHH----HHHHHHHHhcCCCCCCCCCCchhhHhhHHHHHhhCCCCCCChhh
Q 002835 243 GTPSFLEKAIRFIEEHGVQVEGILRQAAYVDD----VHRRIREFEQGKTEFSPEEDAHIIADCVKYVIRELPSSPVPASC 318 (875)
Q Consensus 243 ~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~----V~~Lk~~ld~g~~~~~~~~D~h~VAslLK~fLReLPePLlp~~l 318 (875)
.||.+|.+|++||+++|+.+|||||++|+... +.++++.+|.|.... ...++|+||++||.|||+||+||||+.+
T Consensus 49 ~iP~~l~~~i~~L~~~gl~~eGiFR~~G~~~~~~~~i~~l~~~ld~~~~~~-~~~~~~~va~~LK~fLr~LpePlip~~~ 127 (220)
T cd04380 49 SIPKEIWRLVDYLYTRGLAQEGLFEEPGLPSEPGELLAEIRDALDTGSPFN-SPGSAESVAEALLLFLESLPDPIIPYSL 127 (220)
T ss_pred ccCHHHHHHHHHHHHcCCcccCcccCCCcccchHHHHHHHHHHHhCCCCCC-CCCCHHHHHHHHHHHHHhCCCCccCHHH
Confidence 48999999999999999999999999999999 999999999986443 5679999999999999999999999999
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHh-hCChhHHHHHHHHHHHHHHHHHhhcccCCCccccceeecccccCCCc
Q 002835 319 CNALLEARRTDRGSRVSAMRTAILE-TFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLL 390 (875)
Q Consensus 319 y~~~i~a~~~~~~eri~~i~~LI~~-~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NLAi~FgPtLLrp~~ 390 (875)
|..|+.+... +. ..++.+| + +||+.|+.+|.||+.||++|+.+++.|+|++.|||+||||+|||++.
T Consensus 128 y~~~~~~~~~-~~---~~~~~ll-~~~LP~~n~~~l~~L~~fL~~v~~~~~~nkM~~~nLA~vF~P~Llr~~~ 195 (220)
T cd04380 128 YERLLEAVAN-NE---EDKRQVI-RISLPPVHRNVFVYLCSFLRELLSESADRGLDENTLATIFGRVLLRDPP 195 (220)
T ss_pred HHHHHHHhcC-cH---HHHHHHH-HhhCCHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHhHHHhcchhccCCc
Confidence 9999998722 12 2344544 5 89999999999999999999999999999999999999999999984
No 45
>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.
Probab=99.96 E-value=4.2e-29 Score=247.75 Aligned_cols=167 Identities=26% Similarity=0.489 Sum_probs=151.5
Q ss_pred cHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCCC-CCCCCCchhhHhhHHHHHhhCCCCCCChhhHHHHH
Q 002835 245 PSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTE-FSPEEDAHIIADCVKYVIRELPSSPVPASCCNALL 323 (875)
Q Consensus 245 P~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~~~-~~~~~D~h~VAslLK~fLReLPePLlp~~ly~~~i 323 (875)
|.+|..|+.||+++|+.++||||++|+..++.+++..++.+... ....+|+|++|++||.|||+||+||||.++|+.|+
T Consensus 1 P~~l~~~~~~l~~~~~~~~giFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~va~~lK~~l~~Lp~pli~~~~~~~~~ 80 (169)
T cd00159 1 PLIIEKCIEYLEKNGLNTEGIFRVSGSASKIEELKKKFDRGEDIDDLEDYDVHDVASLLKLYLRELPEPLIPFELYDEFI 80 (169)
T ss_pred ChHHHHHHHHHHHcCCCcCCeeeCCCcHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHcCCCccCCHHHHHHHH
Confidence 88999999999999999999999999999999999999998754 45678999999999999999999999999999999
Q ss_pred HHHhcCc-hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCccccceeecccccCCCcCCcccccccccc
Q 002835 324 EARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETDFNV 402 (875)
Q Consensus 324 ~a~~~~~-~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NLAi~FgPtLLrp~~s~~~e~e~d~~~ 402 (875)
.++...+ ..++..++.++. +||+.|+.+|.+|+.||++|+.+++.|+|++.|||+||||+||++....
T Consensus 81 ~~~~~~~~~~~~~~~~~~i~-~Lp~~~~~~L~~l~~~l~~v~~~~~~n~M~~~nLa~~f~p~l~~~~~~~---------- 149 (169)
T cd00159 81 ELAKIEDEEERIEALKELLK-SLPPENRDLLKYLLKLLHKISQNSEVNKMTASNLAIVFAPTLLRPPDSD---------- 149 (169)
T ss_pred HHHHcCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHccccCCCCCcc----------
Confidence 9998878 889999999886 9999999999999999999999999999999999999999999987321
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 002835 403 GGDGSAQLLQAAAAANHAQAIVITLLEE 430 (875)
Q Consensus 403 ~g~~~~qL~~a~~~~~~~~~IVe~LIen 430 (875)
+........+..+|++||.|
T Consensus 150 --------~~~~~~~~~~~~~~~~li~~ 169 (169)
T cd00159 150 --------DELLEDIKKLNEIVEFLIEN 169 (169)
T ss_pred --------HHHHHHhHHHHHHHHHHHhC
Confidence 12234556788899999975
No 46
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=99.96 E-value=2.4e-29 Score=290.91 Aligned_cols=185 Identities=22% Similarity=0.381 Sum_probs=162.8
Q ss_pred CCCCccccChhHhh-----hcCCCCcHHHHHHHHHHH-HhCCccCCeeecCCCHHHHHHHHHHHhcC-CCCC---CCCCC
Q 002835 225 VKFPVIGRPILLAL-----EDVDGTPSFLEKAIRFIE-EHGVQVEGILRQAAYVDDVHRRIREFEQG-KTEF---SPEED 294 (875)
Q Consensus 225 ~k~~vFGvpLe~ll-----~~~~~VP~~L~kcI~~Le-~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g-~~~~---~~~~D 294 (875)
..+.|||.||..-+ .+..++|++|++|++||+ .+|++.|||||++|++..|+.|++.||.+ +.++ ..+.|
T Consensus 895 ~qTgIFG~~~~~kisv~t~~n~s~lP~VVyrCvEyle~~RgieEeGIyRlSGsaT~Ik~Lke~Fd~~~n~di~~~d~E~d 974 (1112)
T KOG4269|consen 895 KQTGIFGLPLNVKISVVTKRNVSGLPYVVYRCVEYLESCRGIEEEGIYRLSGSATDIKALKEQFDENVNKDILSMDSEMD 974 (1112)
T ss_pred eeceeccccceeeEeeeeeecccCCchHHHHHHHHHHhccccchhceEEecccHHHHHHHHHHhccccCchhhhcccccc
Confidence 35899997764333 224579999999999999 59999999999999999999999999998 3332 35679
Q ss_pred chhhHhhHHHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCC
Q 002835 295 AHIIADCVKYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMS 373 (875)
Q Consensus 295 ~h~VAslLK~fLReLPePLlp~~ly~~~i~a~~~~~-~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMt 373 (875)
||+|||+||+|||+||+|||+.++|..|.......+ .....++..+|. .||++|..+|.+|+.||.+|+.++.+|||+
T Consensus 975 Vn~IaGlLKLYlR~LP~~Ll~de~~~~F~~~i~~~npva~~~~~~~li~-slP~aNl~l~~~LlehL~RI~e~ekvNKMn 1053 (1112)
T KOG4269|consen 975 VNAIAGLLKLYLRELPEPLLTDEMYPLFEEGIALSNPVAKEGCMCDLIS-SLPPANLALFLFLLEHLKRIAEKEKVNKMN 1053 (1112)
T ss_pred HHHHHHHHHHHHHhCCccccchhhhHHHHhhccCCCHHHHHhhHHHHHH-hCCChhHHHHHHHHHHHHHHHhhccccccc
Confidence 999999999999999999999999999999998888 888889999886 899999999999999999999999999999
Q ss_pred ccccceeecccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCC
Q 002835 374 TSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEGSASP 442 (875)
Q Consensus 374 a~NLAi~FgPtLLrp~~s~~~e~e~d~~~~g~~~~qL~~a~~~~~~~~~IVe~LIeny~~IF~e~~~s~ 442 (875)
++|||+||+|+|.+|. .+...||.||+-||.+.....
T Consensus 1054 lrNlciVFsPTLniPs--------------------------------e~~~~li~n~d~if~dv~~q~ 1090 (1112)
T KOG4269|consen 1054 LRNLCIVFSPTLNIPS--------------------------------EIESKLILNYDHIFTDVMRQV 1090 (1112)
T ss_pred ccceeeeecccccCcH--------------------------------HhhhhhccchhhhhccchHHH
Confidence 9999999999999985 145678888999999774433
No 47
>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation. Like all other GTPases, Rho proteins act as molecular switches, with an active GTP-bound form and an inactive GDP-bound form. The active conformation is promoted by guanine-nucleotide exchange factors, and the inactive state by GTPase-activating proteins (GAPs) which stimulate the intrinsic GTPase activity of small G proteins. This entry is a Rho/Rac/Cdc42-like GAP domain, that is found in a wide variety of large, multi-functional proteins []. A number of structure are known for this family [, , ]. The domain is composed of seven alpha helices. This domain is also known as the breakpoint cluster region-homology (BH) domain.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1RGP_A 1AM4_B 1GRN_B 2NGR_B 1OW3_A 1TX4_A 3BYI_B 1XA6_A 3FK2_B 1F7C_A ....
Probab=99.95 E-value=2.9e-28 Score=238.53 Aligned_cols=144 Identities=25% Similarity=0.515 Sum_probs=134.5
Q ss_pred cHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCCC--CCCCCCchhhHhhHHHHHhhCCCCCCChhhHHHH
Q 002835 245 PSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTE--FSPEEDAHIIADCVKYVIRELPSSPVPASCCNAL 322 (875)
Q Consensus 245 P~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~~~--~~~~~D~h~VAslLK~fLReLPePLlp~~ly~~~ 322 (875)
|.+|..|+.||+++|+.++||||++|+..+++++++.++.|... ....+|+|+||++||.||++||+||||.++|+.|
T Consensus 1 P~~l~~~~~~l~~~g~~~~gIFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~L~~lp~pli~~~~~~~~ 80 (151)
T PF00620_consen 1 PRILNDCVDYLEKKGLETEGIFRIPGSSSEVQELRNKIDSGEPPNENLENYDVHDVASLLKRFLRELPEPLIPSELYDKF 80 (151)
T ss_dssp EHHHHHHHHHHHHHTTTSTTTTTSS--HHHHHHHHHHHHTTTTCSTTGTTSTHHHHHHHHHHHHHHSSSTSTTHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCCCCceeccCCHHHHHHHHHHHHhhhcccccccccChhhccccceeeeeccccchhhhhHHHHH
Confidence 88999999999999999999999999999999999999999755 5678899999999999999999999999999999
Q ss_pred HHHHhcCc-hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCccccceeecccccCCC
Q 002835 323 LEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPL 389 (875)
Q Consensus 323 i~a~~~~~-~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NLAi~FgPtLLrp~ 389 (875)
+.+.+..+ .+++..++.++. +||+.|+.+|.+|+.||+.|+.+++.|+||+.|||+||||+||+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~-~lp~~~~~~l~~l~~~l~~v~~~~~~n~m~~~~La~~f~P~l~~~~ 147 (151)
T PF00620_consen 81 IAASKSADEEEQIEAIRSLLQ-SLPPSNRSLLKYLIELLSKVSDNSEINKMTAENLAIIFAPSLFRPP 147 (151)
T ss_dssp HHHHTSSSHHHHHHHHHHHHT-TS-HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTGS
T ss_pred hhhhccchhhHHHHHHHHhhh-ccccccceeehhcccchhhhhcccccccCCHHHHHHHHHhHcCCCC
Confidence 98888877 889999999886 9999999999999999999999999999999999999999999987
No 48
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=99.95 E-value=1.1e-27 Score=261.46 Aligned_cols=196 Identities=23% Similarity=0.370 Sum_probs=173.1
Q ss_pred CCCCCccccChhHhhhc---CCCCcHHHHHHHHHHHHhC-CccCCeeecCCCHHHHHHHHHHHhcCCCC-CCCCCCchhh
Q 002835 224 PVKFPVIGRPILLALED---VDGTPSFLEKAIRFIEEHG-VQVEGILRQAAYVDDVHRRIREFEQGKTE-FSPEEDAHII 298 (875)
Q Consensus 224 ~~k~~vFGvpLe~ll~~---~~~VP~~L~kcI~~Le~~G-l~~EGIFR~sG~~~~V~~Lk~~ld~g~~~-~~~~~D~h~V 298 (875)
+.++..||+||..+.+. +..||.+|..|+.+|..+| +.+|||||.+++.+.+.++.+.++.|..+ +...-|+|..
T Consensus 248 pl~t~qFgvpLqf~~~~~~e~~~iPpiv~~tV~~L~~~~kl~tEG~FRrS~s~~~i~~~q~~~n~G~pVdle~~~~~h~~ 327 (467)
T KOG4406|consen 248 PLPTQQFGVPLQFIPEKNPEGESIPPIVRSTVEYLQAHGKLTTEGLFRRSASRSPIREVQELYNTGEPVDLEVYKDLHAP 327 (467)
T ss_pred CCchhhcCccHHHhcccCcccCCCCcHHHHHhhhhhccceecccceeccccCccchHHHHHHhcCCCcccHHHhccchhh
Confidence 77899999999877654 5679999999999999999 99999999999999999999999999744 4434469999
Q ss_pred HhhHHHHHhhCCCCCCChhhHHHHHHHHhcCchHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCccccc
Q 002835 299 ADCVKYVIRELPSSPVPASCCNALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVA 378 (875)
Q Consensus 299 AslLK~fLReLPePLlp~~ly~~~i~a~~~~~~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NLA 378 (875)
|.+||.|||+||+||++.++|..+......+..+|...+..+|..+||+.|+.+|++++.||.+|+.|+..|+||+.|||
T Consensus 328 avllKtF~R~LpePL~t~~~y~~lt~~~~~~~~~~s~s~~qli~~~lp~~ny~L~r~i~sfL~~Is~~~~~N~M~~sNLa 407 (467)
T KOG4406|consen 328 AVLLKTFLRSLPEPLLTFRLYESLTGFSNVDKSLRSSSTDQLIRPTLPEENYSLLRYISSFLVQISDNSKENKMTASNLA 407 (467)
T ss_pred HHHHHHHHhcCCcccchhhhhhhhhccccchHHhhhhHHHHHhhccCChhHHHHHHHHHHHHHHHHHhHHHhhhccccce
Confidence 99999999999999999999999988877666888999999998779999999999999999999999999999999999
Q ss_pred eeecccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Q 002835 379 ACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEG 438 (875)
Q Consensus 379 i~FgPtLLrp~~s~~~e~e~d~~~~g~~~~qL~~a~~~~~~~~~IVe~LIeny~~IF~e~ 438 (875)
+||||+|+|+... +. .....+..+.++++||+||.++|...
T Consensus 408 ~vfGpnl~w~~~~---------------s~----tl~q~npin~F~~~li~~~~~~f~~~ 448 (467)
T KOG4406|consen 408 VVFGPNLLWAQDE---------------SL----TLKQINPINKFTKFLIEHYKKLFTTP 448 (467)
T ss_pred eeecccccccccc---------------cc----cHHHhccHHHHHHHHHHhhhhccCCC
Confidence 9999999998731 11 12234567889999999999999844
No 49
>KOG2710 consensus Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=99.93 E-value=2.9e-26 Score=255.20 Aligned_cols=199 Identities=20% Similarity=0.354 Sum_probs=166.0
Q ss_pred CCccccChhHhhhc-------------CCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcC-----CCC
Q 002835 227 FPVIGRPILLALED-------------VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQG-----KTE 288 (875)
Q Consensus 227 ~~vFGvpLe~ll~~-------------~~~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g-----~~~ 288 (875)
+.+||+++...+.. ...||.+|.+|+.||.++|+.+.||||++|+..+|++|.+.|+++ +..
T Consensus 64 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~IP~vv~~c~~~lk~~~ls~~GIFRv~gs~kRvr~L~~~fd~~p~y~~~~~ 143 (412)
T KOG2710|consen 64 GLLLKVPLELSSKVASAETRLQSLNPGEGQIPRVVAKCGQYLKKNGLSVVGIFRVAGSIKRVRQLREEFDSPPDYGIDVN 143 (412)
T ss_pred eeeeccchhhhhhhhhccchhccCCccceeCcHHHHHHHHHHHHcCceeeeeeecCCchHHHHHHHHHhccCcccccccc
Confidence 45666666544332 224899999999999999999999999999999999999999998 334
Q ss_pred CCCCCCchhhHhhHHHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhh
Q 002835 289 FSPEEDAHIIADCVKYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSK 367 (875)
Q Consensus 289 ~~~~~D~h~VAslLK~fLReLPePLlp~~ly~~~i~a~~~~~-~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S 367 (875)
..+.+++|+||++||.|||+||+||||.++|+.|+..++... .+++..++.++. .||++|+.+|.+|+.||+.|+.|+
T Consensus 144 ~~e~~nvHDvAaLLK~flr~lp~pLLP~~LY~~f~~p~kl~~e~e~~~~l~l~~~-llp~~nr~~l~~ll~fL~~~a~~s 222 (412)
T KOG2710|consen 144 DWEDFNVHDVAALLKEFLRDLPDPLLPLELYESFINPAKLEPETEQLGVLQLLIY-LLPKCNRDTLEVLLGFLSVVASHA 222 (412)
T ss_pred ccccccHHHHHHHHHHHHHhCCcccCCHHHHHHHhhhhcCCcHHHHHHHHHHHHH-hcCccchhHHHHHHhhhhhhhccc
Confidence 456789999999999999999999999999999999999999 599999999887 999999999999999999999999
Q ss_pred ccc-----------CCCccccceeecccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 002835 368 NQN-----------RMSTSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFG 436 (875)
Q Consensus 368 ~~N-----------kMta~NLAi~FgPtLLrp~~s~~~e~e~d~~~~g~~~~qL~~a~~~~~~~~~IVe~LIeny~~IF~ 436 (875)
+.| +|++.|||.||+|+|++..... .....+.+- ...........+++.||+||+.+|.
T Consensus 223 ~d~~~kdg~~~~gnkm~~~nlatIf~P~iL~k~~~~----~~~~s~~~~------~~~s~~~~i~~~~~~~~~N~e~~f~ 292 (412)
T KOG2710|consen 223 EDNIGKDGQEVNGNKMTSENLATIFGPNILYKLKGS----HKELSVTGV------ANESESEAIVNFAQMMIENLEALFQ 292 (412)
T ss_pred ccccccccccccCcccchhhhhhhhcchhhhcccCC----Ccccccccc------cchhhHHHHHHHHHHhhhhHHHhhc
Confidence 999 9999999999999999953200 111222111 1112334566789999999999999
No 50
>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=99.91 E-value=4.7e-25 Score=250.66 Aligned_cols=239 Identities=17% Similarity=0.220 Sum_probs=209.1
Q ss_pred CCCCCccccChhHhhhcCCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCCCCCCCCCchhhHhhHH
Q 002835 224 PVKFPVIGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHIIADCVK 303 (875)
Q Consensus 224 ~~k~~vFGvpLe~ll~~~~~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~~~~~~~~D~h~VAslLK 303 (875)
+.++.+||.||..+|.+.+ +|..+..++-+|...|.-++||||..++...+++|++.++.|..+-.....|+++|.++|
T Consensus 77 ~~~~~Lfg~pl~nic~~~~-lp~p~~d~l~~lc~kgp~t~giFr~~anek~~relKe~lnsgv~v~l~~~~i~v~a~v~k 155 (741)
T KOG4724|consen 77 TADSFLFGWPLTNICVHFR-LPEPDEDFLLLLCCKGPCTRGIFRTIANEKNVRELKETLNSGVDVGLKSGEIVVDAAVDK 155 (741)
T ss_pred CCCccccCccchhhcccCC-CCChHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHhcccccccccccceEEeehhhh
Confidence 4468899999999888766 999999999999999999999999999999999999999999766666679999999999
Q ss_pred HHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCccccceeec
Q 002835 304 YVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMA 382 (875)
Q Consensus 304 ~fLReLPePLlp~~ly~~~i~a~~~~~-~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NLAi~Fg 382 (875)
.|||.+|.-+|...+|..|+.+....+ +++|..|+++. .+||..|..+|+||+..| .|..++.+|.|+..|||+|++
T Consensus 156 dflr~ip~~~lSsdl~~hw~~~~~~~~~e~~i~~i~r~~-d~Lpr~n~~lL~~l~~vl-~i~~~S~~n~m~~~nla~cv~ 233 (741)
T KOG4724|consen 156 DFLRTIPQLTLSSDLNSHWQLQGPENVYEAIISEIERQG-DRLPRSNKQLLDTLPIVL-CILILSTINSMSGPNLAQCVN 233 (741)
T ss_pred chhhhchhhhhccccHHHHhhccccccHHHHHHHHHHHH-hhCCchHHHHHHHhHHHH-HHHHhhhhccccCccHHHHhc
Confidence 999999999999999999999998888 99999999977 599999999999999999 999999999999999999999
Q ss_pred ccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCcccccccccCCCCCCCCCCC
Q 002835 383 PLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEGSASPEELYSESELSGSGTEEATDD 462 (875)
Q Consensus 383 PtLLrp~~s~~~e~e~d~~~~g~~~~qL~~a~~~~~~~~~IVe~LIeny~~IF~e~~~s~~~ly~ds~~~~s~sees~d~ 462 (875)
|+++++......+...+++ +.+.-+++|||+||-.||+++.. .+|+.+.......+..+|-
T Consensus 234 p~~l~~~~~~s~e~~k~ln----------------~kv~~l~~flI~nclrifGe~i~---~~fr~~s~~s~~~e~~sd~ 294 (741)
T KOG4724|consen 234 PIKLKVLTRTSSEFGKGLN----------------GKVPPLPIFLIVNCLRIFGEDIE---GIFRKSSKQSTFKELKSDL 294 (741)
T ss_pred chhcccccccChhhhcccc----------------CCCCCceeeehhhhHHhhccccc---ceeecccccccchhhhhhh
Confidence 9999998654444444332 34455799999999999998855 4588777766677888888
Q ss_pred CCCCCCCCCCCCCCCCCCCCCc
Q 002835 463 DESYEDDDQDGATPESDAYTDD 484 (875)
Q Consensus 463 d~~~~d~~y~s~e~e~~~~~d~ 484 (875)
+....|..||+.+++.+++.|-
T Consensus 295 s~~q~Ds~yds~~~~~~~~~~~ 316 (741)
T KOG4724|consen 295 SKGQVDSHYDSTHVLASILKEY 316 (741)
T ss_pred ccccccccccccchhhhhhhhh
Confidence 8887799999998887765544
No 51
>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms]
Probab=99.91 E-value=5.4e-24 Score=261.33 Aligned_cols=161 Identities=25% Similarity=0.423 Sum_probs=150.1
Q ss_pred ccccChhHhhh-cCCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCC-CCCCCCCCchhhHhhHHHHH
Q 002835 229 VIGRPILLALE-DVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGK-TEFSPEEDAHIIADCVKYVI 306 (875)
Q Consensus 229 vFGvpLe~ll~-~~~~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~-~~~~~~~D~h~VAslLK~fL 306 (875)
+||+.|..++. ....||.++.+|+.+|+.+|+.++||||++|...+++.|...|+.+. .+.....|+|+|+++||.||
T Consensus 602 ~fG~~l~~~~~~e~~~vP~i~~~c~~~ie~~~lr~eGiYRksG~~~~~e~l~~~~e~~~~~v~l~~~dih~vtsVlK~yL 681 (918)
T KOG1453|consen 602 LFGVSLSELARYEPSTVPFILKKCLREIEAHLLRVEGIYRKSGSMNQVENLSAVFENGDALVLLSTPDIHAVTSVLKLYL 681 (918)
T ss_pred cccHHHHHhhccCCCCCCHHHHHHHHHHHHhhhhccceeeccccHHHHHHHHHHhcCCccceecCCCChHHHHHHHHHHH
Confidence 99999998887 57789999999999999999999999999999999999999999986 44556789999999999999
Q ss_pred hhCCCCCCChhhHHHHHHHHhcCc-h------HHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCccccce
Q 002835 307 RELPSSPVPASCCNALLEARRTDR-G------SRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAA 379 (875)
Q Consensus 307 ReLPePLlp~~ly~~~i~a~~~~~-~------eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NLAi 379 (875)
|+||+|||++.+|+.|+.+.+... . +++..++.+|. .||+.|+.+|++|+.||.+|+.+++.|+|++.|||+
T Consensus 682 r~Lp~pIi~f~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~LP~~~~~vl~~li~Hl~RV~~~~~~NrM~~~nlai 760 (918)
T KOG1453|consen 682 RKLPEPIIIFNLYDEFLSAAKLPEKDEPSRSTEPLRKLKEVLE-QLPRAHYEVLRRLIAHLKRVARYEDVNRMTPKNLAI 760 (918)
T ss_pred HhccccccccchHHHHHhhhccccccccccccccchhHHHHHH-hcCHhHHHHHHHHHHHHHHHHHhhHhhcCCCCCccc
Confidence 999999999999999999999843 3 48999999886 999999999999999999999999999999999999
Q ss_pred eecccccCCCc
Q 002835 380 CMAPLLLRPLL 390 (875)
Q Consensus 380 ~FgPtLLrp~~ 390 (875)
||||||||++.
T Consensus 761 vF~Ptllr~~d 771 (918)
T KOG1453|consen 761 VFAPTLLRPPD 771 (918)
T ss_pred cccCcccCCCC
Confidence 99999999984
No 52
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=99.90 E-value=2.7e-23 Score=228.88 Aligned_cols=174 Identities=21% Similarity=0.340 Sum_probs=149.2
Q ss_pred CCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCCC-CCCCCCchhhHhhHHHHHhhCCCCCCChhhHH
Q 002835 242 DGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTE-FSPEEDAHIIADCVKYVIRELPSSPVPASCCN 320 (875)
Q Consensus 242 ~~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~~~-~~~~~D~h~VAslLK~fLReLPePLlp~~ly~ 320 (875)
..||.+|..|+..||.+||..+||||++|....+++|++.|-+|+.. .....|+|+||++||.|||+|.+||||..+..
T Consensus 360 PMIPalVVHCVneIEaRGLteeGLYRvsg~~rtvk~lkekfLR~Kt~p~~g~~Dihvic~~lKdFLR~LkePLip~~~~r 439 (604)
T KOG3564|consen 360 PMIPALVVHCVNEIEARGLTEEGLYRVSGCDRTVKRLKEKFLRGKTTPHLGNDDIHVICCCLKDFLRNLKEPLIPFRLRR 439 (604)
T ss_pred ccchHHHHHHHHHHHHccccccceeeccccHHHHHHHHHHHhccCCCCccCCcchhHHHHHHHHHHHhcccccccchHHH
Confidence 34899999999999999999999999999999999999999999753 34567999999999999999999999999999
Q ss_pred HHHHHHhcCc-hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCccccceeecccccCCCcCCccccccc
Q 002835 321 ALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETD 399 (875)
Q Consensus 321 ~~i~a~~~~~-~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NLAi~FgPtLLrp~~s~~~e~e~d 399 (875)
+|+.++...+ ..-+.++-..|. .||..||.+|.|||-|+++||+ +..|+|+..|||.+|||+|+.-+.+.
T Consensus 440 df~eAa~~tD~dn~~~aly~aV~-ELpQAnRDTLAfLmiH~qrIAQ-sp~~kM~v~nlA~ifgPtivgh~vp~------- 510 (604)
T KOG3564|consen 440 DFMEAAEITDEDNSILALYQAVG-ELPQANRDTLAFLMIHWQRIAQ-SPRVKMNVANLARIFGPTIVGHAVPN------- 510 (604)
T ss_pred HHHHHhcCCCchhHHHHHHHHHH-hhhhcchhHHHHHHHHHHHHHh-CCcccccHHHHHHHhcchhhccCCCC-------
Confidence 9999999988 666777777787 7999999999999999999888 88999999999999999999855321
Q ss_pred cccCCCChHHHHHHHHHHHHHHHHHHHHHhhcc
Q 002835 400 FNVGGDGSAQLLQAAAAANHAQAIVITLLEEYD 432 (875)
Q Consensus 400 ~~~~g~~~~qL~~a~~~~~~~~~IVe~LIeny~ 432 (875)
... ..+...+.-+.++|+.|++--.
T Consensus 511 -----pd~---~~~l~dv~~q~rvmkaLlelp~ 535 (604)
T KOG3564|consen 511 -----PDQ---VTMLQDVKTQPRVMKALLELPL 535 (604)
T ss_pred -----ccH---hHHHHhhhhhHHHHHHHHhCCH
Confidence 011 2334455667788888876433
No 53
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=99.86 E-value=6.5e-22 Score=178.95 Aligned_cols=87 Identities=47% Similarity=0.614 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCC-CCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHH
Q 002835 680 SRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSF-PIPDTIDEKTKVELGEIAQAETDIINLKQKAKDL 758 (875)
Q Consensus 680 ~~~~~~~~~r~~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~-~~~~~~~~~~~~~l~~i~~~e~~v~~l~~~~~~l 758 (875)
+||++.+++|.+|||||.+||+|||+|+++|.|||.||+.+.|++ +++++||.+++++|.|||++|++|++||++|.+|
T Consensus 1 ~rk~~~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~~L 80 (88)
T PF14389_consen 1 KRKQALHERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKVLSL 80 (88)
T ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999988 6779999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 002835 759 RVQLSEQL 766 (875)
Q Consensus 759 ~~~l~~~~ 766 (875)
+.+|++||
T Consensus 81 ~~~l~~q~ 88 (88)
T PF14389_consen 81 YRQLFQQR 88 (88)
T ss_pred HHHHHhcC
Confidence 99999986
No 54
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]
Probab=99.75 E-value=1.1e-18 Score=204.25 Aligned_cols=158 Identities=23% Similarity=0.406 Sum_probs=145.8
Q ss_pred CCccccChhHhhhcCCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcC-CCCCCC-CCCchhhHhhHHH
Q 002835 227 FPVIGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQG-KTEFSP-EEDAHIIADCVKY 304 (875)
Q Consensus 227 ~~vFGvpLe~ll~~~~~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g-~~~~~~-~~D~h~VAslLK~ 304 (875)
...||.||..+......||.++.+|+.||+..|+.++||||++|+......++.+|.+. ..++.. +..+|++|+.+|.
T Consensus 915 s~~~~~~l~~~~t~~k~ip~~~ekc~sfiedtg~~te~lyrv~gnkT~~eelrkqf~n~~~~dl~s~d~~v~~vagAlks 994 (1100)
T KOG4271|consen 915 SNYFLTPLQDAVTSEKPIPIFLEKCKSFIEDTGLSTEGLYRVSGNKTDLEELRKQFLNDHNFDLSSMDTTVNVVAGALKS 994 (1100)
T ss_pred hhccCCcccccccCCcccchHHHHHHHHHHhccchhhhheecCCCCccHHHHHHHHHhhccccccccccccccccCcchh
Confidence 56899999887777888999999999999999999999999999999999999998873 333322 4579999999999
Q ss_pred HHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCccccceeecc
Q 002835 305 VIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAP 383 (875)
Q Consensus 305 fLReLPePLlp~~ly~~~i~a~~~~~-~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NLAi~FgP 383 (875)
||..||+||+|+.++..|.+++++.+ ..++..++..+. .||+.|+.+++|++.||.+|+....+|.||..||.|||+|
T Consensus 995 ffa~Lpeplipys~h~~~~e~~kI~D~~rklhglr~~~a-~l~~~n~dvfry~ithL~kvs~~~k~~l~t~~~~~i~~~~ 1073 (1100)
T KOG4271|consen 995 FFACLPEPLIPYSYHPRLKEAMKISDRGRKLHGLREASA-KLHPSNQDVFRYVITHLNKVSCSPKTNLMTNNNLSICFPT 1073 (1100)
T ss_pred hhhhCCCcccCccCCcchhhhhhcccchhhccchhhHhh-hcCchHHHHHHHHHHHHhhhcccccccccccccccccccc
Confidence 99999999999999999999999999 899999999876 9999999999999999999999999999999999999999
Q ss_pred cc
Q 002835 384 LL 385 (875)
Q Consensus 384 tL 385 (875)
.|
T Consensus 1074 ~~ 1075 (1100)
T KOG4271|consen 1074 LL 1075 (1100)
T ss_pred hH
Confidence 88
No 55
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=99.72 E-value=1.2e-17 Score=177.14 Aligned_cols=166 Identities=22% Similarity=0.262 Sum_probs=140.5
Q ss_pred CCCCCccccChhHhhhc-CCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCCCCC----CCCCchhh
Q 002835 224 PVKFPVIGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFS----PEEDAHII 298 (875)
Q Consensus 224 ~~k~~vFGvpLe~ll~~-~~~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~~~~~----~~~D~h~V 298 (875)
|--..+||.+|+.++++ ...-|.++.+|+..|+++|++.-|+|+++|+..+-+.|+..|+.....+. .--|.++|
T Consensus 179 PrlrgvfG~~L~~lV~RE~~~~PIvlrR~~~EiEkRGvD~~Gly~lCGS~~KKkmLR~~fe~n~r~~el~~E~iPD~nvI 258 (442)
T KOG1452|consen 179 PRLRGVFGISLSRLVQREPESPPIVLRRLYAEIEKRGVDYSGLYSLCGSVEKKKMLRRDFEPNGRDFELGAESIPDYNVI 258 (442)
T ss_pred cccccccchhhHhHhhcCCCCCchHHHHHHHHHHhcccccccceeeechhhHHHHHHHHhccCCcccccccccCCCccee
Confidence 33356999999988876 55678899999999999999999999999999999999999998643322 12488999
Q ss_pred HhhHHHHHhhCCCCCCChhhHHHHHHHHhc--Cc--hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCc
Q 002835 299 ADCVKYVIRELPSSPVPASCCNALLEARRT--DR--GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMST 374 (875)
Q Consensus 299 AslLK~fLReLPePLlp~~ly~~~i~a~~~--~~--~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta 374 (875)
++++|.||||||||||+...|...++++.. .+ ......+-.+| .-||..++.+|-.++.||..|..+|+.|+||+
T Consensus 259 tg~~kD~lrElpEPl~t~~~f~m~~dA~sV~LP~dp~~N~kl~l~ii-dcL~r~~~~~l~~~LDHLS~Vl~sS~~N~lt~ 337 (442)
T KOG1452|consen 259 TGDSKDELRELPEPLVTGQDFEMDFDAASVALPFDPHLNLKLFLAII-DCLERELSKQLNVCLDHLSTVLCSSPHNGLTP 337 (442)
T ss_pred ecccHhHHHhCCCccccchhhhhhhhhhhhcCCCCccccHHHHHHHH-HHHHHHhhhhHhHHHhhhhHheecCCcCCcCH
Confidence 999999999999999999999888887642 22 33344555555 48999999999999999999999999999999
Q ss_pred cccceeecccccCCCc
Q 002835 375 SAVAACMAPLLLRPLL 390 (875)
Q Consensus 375 ~NLAi~FgPtLLrp~~ 390 (875)
..||.||||.||-...
T Consensus 338 ~~Ls~i~~P~L~~~~~ 353 (442)
T KOG1452|consen 338 TRLSLIFAPLLFFCLD 353 (442)
T ss_pred HHHHHHhhhhHHHhhc
Confidence 9999999999987543
No 56
>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins. This subgroup also contains two groups of closely related proteins, BRCC3 and DEPDC7, which both contain a C-terminal RhoGAP-like domain and an N-terminal DEP (Disheveled, Egl-10, and Pleckstrin) domain. The function(s) of BRCC3 and DEPDC7 are unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.60 E-value=3.8e-15 Score=155.21 Aligned_cols=181 Identities=14% Similarity=0.210 Sum_probs=142.4
Q ss_pred CccccChhHhh-hcCCCCcHHHHHHH--HHHHHhCCcc--CCeeecCCCHHHHHHHHHHHhcCCCC--CCCCCCch----
Q 002835 228 PVIGRPILLAL-EDVDGTPSFLEKAI--RFIEEHGVQV--EGILRQAAYVDDVHRRIREFEQGKTE--FSPEEDAH---- 296 (875)
Q Consensus 228 ~vFGvpLe~ll-~~~~~VP~~L~kcI--~~Le~~Gl~~--EGIFR~sG~~~~V~~Lk~~ld~g~~~--~~~~~D~h---- 296 (875)
.+||+|+.+-+ ..+...|..+.... +++..+-++. .|+|+.++...-+...++.++..... .......+
T Consensus 20 ~l~glp~Ld~vl~~~~~~p~~i~~~~~~~~~~~~~ldr~vv~~~~ks~~~~Wl~aA~~CLe~~Pd~~~~~~~~~~y~~~~ 99 (235)
T cd04405 20 QLVGLPLLEELLDPALVNPKHISYNMDPDVYTSNYLDREVVKLFSKSQLDHWLLSAMDCLANWPDQLVVDVSRPLYSQHD 99 (235)
T ss_pred HHcCCccHHHHhcccCCCCcchhhcccccccccccccchhhcccccccCcHHHHHHHHHHHhCCcccccccccccccccc
Confidence 48999886444 44555677775555 5555555554 79999999999999999988875321 11111122
Q ss_pred -------hhHhhHHHHHhhCCCCCCChhhHHHHHHHHh---cCc-hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHH
Q 002835 297 -------IIADCVKYVIRELPSSPVPASCCNALLEARR---TDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVAS 365 (875)
Q Consensus 297 -------~VAslLK~fLReLPePLlp~~ly~~~i~a~~---~~~-~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~ 365 (875)
+|+.+++.||++|||||+|..+|+.|+.++. ... +..+++++.++. .||++||..|+.|+.||+.|+.
T Consensus 100 ~~~~~e~dv~~ti~qyf~~LpEPLLT~~l~~~~~~I~~ll~~~~~e~aleAlQl~~l-LLP~enRe~Lq~LL~fl~~va~ 178 (235)
T cd04405 100 MLSGFKRLLFKTIAKYYGQLKEPLLTFHLFDIFVGILELLGNGKEEVALEALQLCLL-LLPPASRRELRRLLRFMARAAK 178 (235)
T ss_pred cccchHHHHHHHHHHHHhcCCCccCcchHHHHHHHHHHHhcCccHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999998888886 334 888999999887 9999999999999999999999
Q ss_pred hh-------cccCCCccccceeecccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 002835 366 SK-------NQNRMSTSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFG 436 (875)
Q Consensus 366 ~S-------~~NkMta~NLAi~FgPtLLrp~~s~~~e~e~d~~~~g~~~~qL~~a~~~~~~~~~IVe~LIeny~~IF~ 436 (875)
+. ..|+| |++..|+|++++++.- . ...+..+|.|||+|+..||.
T Consensus 179 ~~~~~L~~~~~nR~---~v~~~Fs~~ii~~~~l--------------------~----~~~~~~LV~Fmmd~~~~ifk 229 (235)
T cd04405 179 NDMPRLHKEIENRM---LVKQTFSRAILCSKDL--------------------D----EGLADLLVLFLMDHHQDIFK 229 (235)
T ss_pred cCccccccccchHH---HHHHHhhhHhcCcccc--------------------C----HHHHHHHHHHHHHcchhhhc
Confidence 95 26677 8999999999998720 0 13467899999999999997
No 57
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=99.60 E-value=4.3e-15 Score=138.44 Aligned_cols=97 Identities=23% Similarity=0.390 Sum_probs=68.0
Q ss_pred EEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCe----eecCCCceeeecCCcceEEEEec
Q 002835 86 KSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGI----DLNNSGSVVVKADKKLLTVLFPD 161 (875)
Q Consensus 86 KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~----~l~~s~sv~~~~~KK~~FvI~~~ 161 (875)
|+|||.+++.+. .++|++|||||+++.|+||++..+..+.+ .+.|..| .+.....-.......++|.|..+
T Consensus 1 KeG~L~K~g~~~-~k~wkkRwFvL~~~~L~Yyk~~~d~~~~G----~I~L~~~~~~~~v~~~~~~~~~~~~~~~F~i~t~ 75 (103)
T cd01251 1 KEGFMEKTGPKH-TEGFKKRWFTLDDRRLMYFKDPLDAFAKG----EVFLGSQEDGYEVREGLPPGTQGNHWYGVTLVTP 75 (103)
T ss_pred CceeEEecCCCC-CCCceeEEEEEeCCEEEEECCCCCcCcCc----EEEeeccccceeEeccCCccccccccceEEEEeC
Confidence 689888766543 58999999999999999999987654432 1333322 22111000001122347887765
Q ss_pred CCCCceeEEEecchhhHHHHHHHHHhhhc
Q 002835 162 GRDGRAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 162 ~~dgrty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
+|+|+|+|+|++|+.+||+||+.++.
T Consensus 76 ---~Rty~l~a~s~~e~~~Wi~ai~~v~~ 101 (103)
T cd01251 76 ---ERKFLFACETEQDRREWIAAFQNVLS 101 (103)
T ss_pred ---CeEEEEECCCHHHHHHHHHHHHHHhc
Confidence 89999999999999999999999984
No 58
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=99.59 E-value=5.5e-15 Score=136.80 Aligned_cols=97 Identities=20% Similarity=0.322 Sum_probs=70.1
Q ss_pred EEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecCC
Q 002835 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGR 163 (875)
Q Consensus 84 v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~~ 163 (875)
|+|+|||.+++.. .++|++|||||++..|+|||++++..+. ..+.|..|.+...........+.+||.|...
T Consensus 2 v~k~G~L~Kkg~~--~k~WkkRwfvL~~~~L~yyk~~~~~~~~----~~I~L~~~~v~~~~~~~~~~~~~~~F~I~t~-- 73 (100)
T cd01233 2 VSKKGYLNFPEET--NSGWTRRFVVVRRPYLHIYRSDKDPVER----GVINLSTARVEHSEDQAAMVKGPNTFAVCTK-- 73 (100)
T ss_pred cceeEEEEeeCCC--CCCcEEEEEEEECCEEEEEccCCCccEe----eEEEecccEEEEccchhhhcCCCcEEEEECC--
Confidence 6899988876544 4899999999999999999998764322 2244444443322110001135688988754
Q ss_pred CCceeEEEecchhhHHHHHHHHHhhh
Q 002835 164 DGRAFTLKAESLEDLYDWKTALENAL 189 (875)
Q Consensus 164 dgrty~fQAdSEeE~~eWI~AI~~ai 189 (875)
.++|+|+|+|++|+.+||.||+..+
T Consensus 74 -~rt~~~~A~s~~e~~~Wi~ai~~~~ 98 (100)
T cd01233 74 -HRGYLFQALSDKEMIDWLYALNPLY 98 (100)
T ss_pred -CCEEEEEcCCHHHHHHHHHHhhhhh
Confidence 7999999999999999999998765
No 59
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=99.55 E-value=1.8e-14 Score=131.66 Aligned_cols=93 Identities=27% Similarity=0.432 Sum_probs=71.2
Q ss_pred EEeeeEeecCCC--CccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecCC
Q 002835 86 KSGPLFISSKGI--GWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGR 163 (875)
Q Consensus 86 KEGyL~k~kKg~--~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~~ 163 (875)
++|||+++.+.. .++.|++|||||+++.|+||+++.+..+. ..+.|.++.+... ....+.++|.|..+
T Consensus 2 ~~GwL~kk~~~~g~~~k~WkkrwfvL~~~~L~yyk~~~~~~~~----~~I~L~~~~v~~~----~~~~k~~~F~I~~~-- 71 (96)
T cd01260 2 CDGWLWKRKKPGGFMGQKWARRWFVLKGTTLYWYRSKQDEKAE----GLIFLSGFTIESA----KEVKKKYAFKVCHP-- 71 (96)
T ss_pred ceeEEEEecCCCCccccCceeEEEEEECCEEEEECCCCCCccc----eEEEccCCEEEEc----hhcCCceEEEECCC--
Confidence 689999976532 57899999999999999999998765432 2355666654432 12347788888743
Q ss_pred CCceeEEEecchhhHHHHHHHHHhh
Q 002835 164 DGRAFTLKAESLEDLYDWKTALENA 188 (875)
Q Consensus 164 dgrty~fQAdSEeE~~eWI~AI~~a 188 (875)
+.++|+|+|+|++++.+||.||+.|
T Consensus 72 ~~~~~~f~a~s~~e~~~Wi~ai~~~ 96 (96)
T cd01260 72 VYKSFYFAAETLDDLSQWVNHLITA 96 (96)
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 3499999999999999999999864
No 60
>cd04401 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal MSB1-like proteins. Msb1 was originally identified as a multicopy suppressor of temperature sensitive cdc42 mutation. Msb1 is a positive regulator of the Pkc1p-MAPK pathway and 1,3-beta-glucan synthesis, both pathways involve Rho1 regulation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.53 E-value=3.4e-14 Score=146.41 Aligned_cols=144 Identities=15% Similarity=0.211 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHhCCccCCe---eecCCCHHHHHHHHHH-HhcCC--CCC-------CCCCCchhhHhhHHHHHhhCCCC
Q 002835 246 SFLEKAIRFIEEHGVQVEGI---LRQAAYVDDVHRRIRE-FEQGK--TEF-------SPEEDAHIIADCVKYVIRELPSS 312 (875)
Q Consensus 246 ~~L~kcI~~Le~~Gl~~EGI---FR~sG~~~~V~~Lk~~-ld~g~--~~~-------~~~~D~h~VAslLK~fLReLPeP 312 (875)
.+|..|.+.|+.+|+++++| ||..++...++.++.. |+.+. ... ....|+|+|+++||.|||.||.+
T Consensus 8 ~l~~~~t~eLk~rg~~t~~l~~pfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~e~~~~d~~~l~~~LK~~~~rLP~~ 87 (198)
T cd04401 8 GLIHNITEELKSRGLDTPLLFLPFRPELSPDKVRSLINSFFPSQNGQLQGTAELLDELRYADPHTLILVLKWIWSRLPGS 87 (198)
T ss_pred HHHHHHHHHHHhcccCcchhhcccCCCCCHHHHHHHHHHHCCCcCCcccchHHHHHHHhccChHHHHHHHHHHHHHCCCC
Confidence 47899999999999999999 9999999999998655 55542 111 12369999999999999999999
Q ss_pred CCCh-hhHHHHHHHHhcCchHHHHHHHHHHHhhC-ChhHHHHHHHHHHHHHHHHHhhcccCCCccccceeecccccCCCc
Q 002835 313 PVPA-SCCNALLEARRTDRGSRVSAMRTAILETF-PEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLL 390 (875)
Q Consensus 313 Llp~-~ly~~~i~a~~~~~~eri~~i~~LI~~~L-P~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NLAi~FgPtLLrp~~ 390 (875)
+|+. +.|..|...-+..+ .-..+++.+|...+ |+.|..+|..++.+|..|+.|+..|+|+..+|+.+|||.+|..+.
T Consensus 88 ~v~~~~~Y~~F~~~E~~~~-~p~~aF~~~l~~~~~~~a~~~il~~ffdlL~~Iaa~s~~N~ms~~kLs~~fg~waF~~~~ 166 (198)
T cd04401 88 KVIWWEVYEEFKARERRSN-YPADAFLDLLPQCLSSPAHASILYDFFDLLSSIAAHSSVNGMSGRKLSKMAGPWAFGKPT 166 (198)
T ss_pred ccCCHHHHHHHHHHHHhcC-CcHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHhcCccCCcHhHHHHHhhHHHcCCCC
Confidence 9999 99999999755444 22337888776333 889999999999999999999999999999999999999999874
No 61
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.51 E-value=5.1e-14 Score=129.31 Aligned_cols=90 Identities=21% Similarity=0.341 Sum_probs=67.6
Q ss_pred EeeeEeecCCCCccCceeEEEEEeC--CeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecCCC
Q 002835 87 SGPLFISSKGIGWTSWKKRWFILTH--TSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRD 164 (875)
Q Consensus 87 EGyL~k~kKg~~~ksWkKRWfVL~~--~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~~d 164 (875)
+|||.+++.+...+.|++|||||++ ..|+||+++.+..|.+ .|.|..+.+... ...++++|.|...
T Consensus 2 ~GyL~K~g~~~~~K~WkkRWFvL~~~~~~L~Yyk~~~d~~p~G----~I~L~~~~~~~~-----~~~~~~~F~i~t~--- 69 (95)
T cd01265 2 CGYLHKIEGKGPLRGRRSRWFALDDRTCYLYYYKDSQDAKPLG----RVDLSGAAFTYD-----PREEKGRFEIHSN--- 69 (95)
T ss_pred cccEEEecCCCCCcCceeEEEEEcCCCcEEEEECCCCcccccc----eEECCccEEEcC-----CCCCCCEEEEEcC---
Confidence 6999998765447999999999984 4799999987654322 244554443321 2234677888764
Q ss_pred CceeEEEecchhhHHHHHHHHHhh
Q 002835 165 GRAFTLKAESLEDLYDWKTALENA 188 (875)
Q Consensus 165 grty~fQAdSEeE~~eWI~AI~~a 188 (875)
+|+|+|+|+|++||+.||.||+.+
T Consensus 70 ~r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 70 NEVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhh
Confidence 799999999999999999999875
No 62
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=99.51 E-value=4.7e-14 Score=132.12 Aligned_cols=98 Identities=20% Similarity=0.215 Sum_probs=67.9
Q ss_pred EEEeeeEeecCC---CCccCceeEEEEEeCCeEEEecCCCCC-CCCCCccceeecCCeeecCCCceee----ecCCcceE
Q 002835 85 FKSGPLFISSKG---IGWTSWKKRWFILTHTSLVFFRSDPSA-IPQKGSEVNLTLGGIDLNNSGSVVV----KADKKLLT 156 (875)
Q Consensus 85 ~KEGyL~k~kKg---~~~ksWkKRWfVL~~~sL~yYKd~k~~-~p~~g~e~~i~L~~~~l~~s~sv~~----~~~KK~~F 156 (875)
+++|||+++.++ .+.++|++|||||+++.|.||++..+. ..+.| .+.|..|.......... ...+++||
T Consensus 1 ~k~g~l~Kr~~~~~~~~~~nwKkRwFvL~~~~L~Yyk~~~~~~~~~kG---~I~L~~~~~ve~~~~~~~~~~~~~~~~~F 77 (106)
T cd01238 1 ILESILVKRSQQKKKTSPLNYKERLFVLTKSKLSYYEGDFEKRGSKKG---SIDLSKIKCVETVKPEKNPPIPERFKYPF 77 (106)
T ss_pred CcceeeeeeccCCCCCCCCCceeEEEEEcCCEEEEECCCcccccCcce---eEECCcceEEEEecCCcCcccccccCccE
Confidence 479999997543 345699999999999999999987653 11121 24444443221100000 11357889
Q ss_pred EEEecCCCCceeEEEecchhhHHHHHHHHHhh
Q 002835 157 VLFPDGRDGRAFTLKAESLEDLYDWKTALENA 188 (875)
Q Consensus 157 vI~~~~~dgrty~fQAdSEeE~~eWI~AI~~a 188 (875)
.|.+. +++|+|+|+|++|+++||.||+.+
T Consensus 78 ~i~t~---~r~~yl~A~s~~er~~WI~ai~~~ 106 (106)
T cd01238 78 QVVHD---EGTLYVFAPTEELRKRWIKALKQV 106 (106)
T ss_pred EEEeC---CCeEEEEcCCHHHHHHHHHHHHhC
Confidence 88875 689999999999999999999863
No 63
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.47 E-value=2.6e-13 Score=130.32 Aligned_cols=98 Identities=21% Similarity=0.492 Sum_probs=72.3
Q ss_pred EEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecCC--
Q 002835 86 KSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGR-- 163 (875)
Q Consensus 86 KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~~-- 163 (875)
|+|||++++.. .+.|++|||||.++.|+||+++.+..+ ...+.|..|.+... ....+++||.|.....
T Consensus 2 k~G~L~K~~~~--~~~WkkRwfvL~~~~L~yyk~~~~~~~----~g~I~L~~~~v~~~----~~~~~~~~F~i~~~~~~~ 71 (125)
T cd01252 2 REGWLLKQGGR--VKTWKRRWFILTDNCLYYFEYTTDKEP----RGIIPLENVSIREV----EDPSKPFCFELFSPSDKQ 71 (125)
T ss_pred cEEEEEEeCCC--CCCeEeEEEEEECCEEEEEcCCCCCCc----eEEEECCCcEEEEc----ccCCCCeeEEEECCcccc
Confidence 78999865543 489999999999999999998775432 22355555544322 1235778898776432
Q ss_pred ----------------CCceeEEEecchhhHHHHHHHHHhhhccCC
Q 002835 164 ----------------DGRAFTLKAESLEDLYDWKTALENALAQAP 193 (875)
Q Consensus 164 ----------------dgrty~fQAdSEeE~~eWI~AI~~ai~~aP 193 (875)
..++|+|+|++++|+.+||.||+.++...|
T Consensus 72 ~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~~~~ 117 (125)
T cd01252 72 QIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASISPNP 117 (125)
T ss_pred ccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhcCc
Confidence 126899999999999999999999996444
No 64
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.46 E-value=2e-13 Score=126.79 Aligned_cols=91 Identities=24% Similarity=0.395 Sum_probs=65.6
Q ss_pred EEeeeEeecCCC---CccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceee-ec-----CCcceE
Q 002835 86 KSGPLFISSKGI---GWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVV-KA-----DKKLLT 156 (875)
Q Consensus 86 KEGyL~k~kKg~---~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~-~~-----~KK~~F 156 (875)
.+||| .++|+ ..++|++|||+|+++.|+|||+.....+.. ..+.|..|. +|.. .. .+.+||
T Consensus 2 ~~G~l--~k~~g~~r~~K~WkrRwF~L~~~~L~y~K~~~~~~~~~---g~IdL~~~~-----sVk~~~~~~~~~~~~~~F 71 (101)
T cd01264 2 IEGQL--KEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKDDPDD---CSIDLSKIR-----SVKAVAKKRRDRSLPKAF 71 (101)
T ss_pred cceEE--eecCccceeeecceeEEEEEeCCEEEEEeccCccCCCC---ceEEcccce-----EEeeccccccccccCcEE
Confidence 47955 44444 679999999999999999999876543321 234444443 2211 11 234899
Q ss_pred EEEecCCCCceeEEEecchhhHHHHHHHHHhhh
Q 002835 157 VLFPDGRDGRAFTLKAESLEDLYDWKTALENAL 189 (875)
Q Consensus 157 vI~~~~~dgrty~fQAdSEeE~~eWI~AI~~ai 189 (875)
.|..+ .|+|+|+|+|++++++||++|+.|+
T Consensus 72 ei~tp---~rt~~l~A~se~e~e~WI~~i~~a~ 101 (101)
T cd01264 72 EIFTA---DKTYILKAKDEKNAEEWLQCLNIAV 101 (101)
T ss_pred EEEcC---CceEEEEeCCHHHHHHHHHHHHhhC
Confidence 98876 6999999999999999999998763
No 65
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=99.44 E-value=6.1e-13 Score=121.43 Aligned_cols=90 Identities=16% Similarity=0.271 Sum_probs=67.2
Q ss_pred EEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecCCCC
Q 002835 86 KSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDG 165 (875)
Q Consensus 86 KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~~dg 165 (875)
++|||.|.... .++|++|||||+++.|.||+++.+... ++--.+.|..|.+... ..++++|.|... .+
T Consensus 1 ~~G~L~K~~~~--~k~Wk~RwFvL~~g~L~Yyk~~~~~~~--~~~G~I~L~~~~i~~~------~~~~~~F~i~~~--~~ 68 (91)
T cd01247 1 TNGVLSKWTNY--INGWQDRYFVLKEGNLSYYKSEAEKSH--GCRGSIFLKKAIIAAH------EFDENRFDISVN--EN 68 (91)
T ss_pred CceEEEEeccc--cCCCceEEEEEECCEEEEEecCccCcC--CCcEEEECcccEEEcC------CCCCCEEEEEeC--CC
Confidence 37988887765 589999999999999999999776421 1123355565554432 234677888653 35
Q ss_pred ceeEEEecchhhHHHHHHHHHh
Q 002835 166 RAFTLKAESLEDLYDWKTALEN 187 (875)
Q Consensus 166 rty~fQAdSEeE~~eWI~AI~~ 187 (875)
++|+|.|++++|+..||.||+.
T Consensus 69 r~~~L~A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 69 VVWYLRAENSQSRLLWMDSVVR 90 (91)
T ss_pred eEEEEEeCCHHHHHHHHHHHhh
Confidence 9999999999999999999974
No 66
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.43 E-value=6.5e-13 Score=119.43 Aligned_cols=93 Identities=23% Similarity=0.447 Sum_probs=68.7
Q ss_pred EEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecCCCC
Q 002835 86 KSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDG 165 (875)
Q Consensus 86 KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~~dg 165 (875)
|+|||+++..+. .+.|++|||||+++.|.||++...... .+...+.+..|.+.... ....+++||.|... .
T Consensus 1 k~G~L~kk~~~~-~~~W~kr~~~L~~~~l~~y~~~~~~~~--~~~~~i~l~~~~v~~~~---~~~~~~~~f~i~~~---~ 71 (94)
T cd01250 1 KQGYLYKRSSKS-NKEWKKRWFVLKNGQLTYHHRLKDYDN--AHVKEIDLRRCTVRHNG---KQPDRRFCFEVISP---T 71 (94)
T ss_pred CcceEEEECCCc-CCCceEEEEEEeCCeEEEEcCCccccc--ccceEEeccceEEecCc---cccCCceEEEEEcC---C
Confidence 689999876543 578999999999999999998875211 11233556655554321 11236788988865 3
Q ss_pred ceeEEEecchhhHHHHHHHHHh
Q 002835 166 RAFTLKAESLEDLYDWKTALEN 187 (875)
Q Consensus 166 rty~fQAdSEeE~~eWI~AI~~ 187 (875)
++|+|+|++++++.+||.||++
T Consensus 72 ~~~~f~a~s~~~~~~Wi~al~~ 93 (94)
T cd01250 72 KTWHFQADSEEERDDWISAIQE 93 (94)
T ss_pred cEEEEECCCHHHHHHHHHHHhc
Confidence 8999999999999999999975
No 67
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=99.41 E-value=9.9e-13 Score=122.33 Aligned_cols=92 Identities=24% Similarity=0.331 Sum_probs=66.1
Q ss_pred EEEEeeeEeecCCCCccCceeEEEEEeCC------eEEEecCCCCCCCC-CCccceeecCCeeecCCCceeeecCCcceE
Q 002835 84 VFKSGPLFISSKGIGWTSWKKRWFILTHT------SLVFFRSDPSAIPQ-KGSEVNLTLGGIDLNNSGSVVVKADKKLLT 156 (875)
Q Consensus 84 v~KEGyL~k~kKg~~~ksWkKRWfVL~~~------sL~yYKd~k~~~p~-~g~e~~i~L~~~~l~~s~sv~~~~~KK~~F 156 (875)
|.++|||.++ ++|+||||||++. .|.||++++..... ..+--.+.|..|..... .....++++|
T Consensus 2 v~k~GyL~K~------K~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~~---~~d~k~~~~f 72 (101)
T cd01257 2 VRKSGYLRKQ------KSMHKRFFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNINK---RADAKHRHLI 72 (101)
T ss_pred ccEEEEEeEe------cCcEeEEEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEEEee---ccccccCeEE
Confidence 7899999986 7999999999988 69999998753111 11223466666653221 0112345777
Q ss_pred EEEecCCCCceeEEEecchhhHHHHHHHHHh
Q 002835 157 VLFPDGRDGRAFTLKAESLEDLYDWKTALEN 187 (875)
Q Consensus 157 vI~~~~~dgrty~fQAdSEeE~~eWI~AI~~ 187 (875)
.|..+ .++|+|.|+|++|+++|+.+|..
T Consensus 73 ~i~t~---dr~f~l~aese~E~~~Wi~~i~~ 100 (101)
T cd01257 73 ALYTR---DEYFAVAAENEAEQDSWYQALLE 100 (101)
T ss_pred EEEeC---CceEEEEeCCHHHHHHHHHHHhh
Confidence 77664 58999999999999999999964
No 68
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.39 E-value=8.9e-13 Score=123.22 Aligned_cols=92 Identities=21% Similarity=0.408 Sum_probs=62.8
Q ss_pred EEeeeEeecCC-------CCccCceeEEEEEeC-CeEEEecCCC-CCCCCCCccceeecCCeeecCCCceeeecCCcceE
Q 002835 86 KSGPLFISSKG-------IGWTSWKKRWFILTH-TSLVFFRSDP-SAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLT 156 (875)
Q Consensus 86 KEGyL~k~kKg-------~~~ksWkKRWfVL~~-~sL~yYKd~k-~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~F 156 (875)
++|||++...+ ..+++|+||||||++ +.|+||++.. +..|.+ .|.|..|...... .....+.++|
T Consensus 1 ~~g~l~~~~~~~~~~~~~~~~K~WkrRWFvL~~~~~L~y~~d~~~~~~p~G----~IdL~~~~~V~~~--~~~~~~~~~f 74 (104)
T cd01236 1 YCGWLLVAPDGTDFDNPVHRSKRWQRRWFILYDHGLLTYALDEMPTTLPQG----TIDMNQCTDVVDA--EARTGQKFSI 74 (104)
T ss_pred CcceeEEcCCCCcccccceeeccccceEEEEeCCCEEEEeeCCCCCcccce----EEEccceEEEeec--ccccCCccEE
Confidence 47999986544 357999999999985 5677776653 333322 2333433322111 0123345788
Q ss_pred EEEecCCCCceeEEEecchhhHHHHHHHHH
Q 002835 157 VLFPDGRDGRAFTLKAESLEDLYDWKTALE 186 (875)
Q Consensus 157 vI~~~~~dgrty~fQAdSEeE~~eWI~AI~ 186 (875)
.|..+ .|+|+|.|+|++|+++||.+|.
T Consensus 75 ~I~tp---~R~f~l~Aete~E~~~Wi~~l~ 101 (104)
T cd01236 75 CILTP---DKEHFIKAETKEEISWWLNMLM 101 (104)
T ss_pred EEECC---CceEEEEeCCHHHHHHHHHHHH
Confidence 88766 7999999999999999999986
No 69
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=99.39 E-value=1.5e-12 Score=119.56 Aligned_cols=95 Identities=19% Similarity=0.379 Sum_probs=64.3
Q ss_pred EEeeeEeecCCCCccCceeEEEEEeC--CeEEEecCCCCCCCCCCccceeecCCeeecCC-Cc---eeeecCCcceEEEE
Q 002835 86 KSGPLFISSKGIGWTSWKKRWFILTH--TSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNS-GS---VVVKADKKLLTVLF 159 (875)
Q Consensus 86 KEGyL~k~kKg~~~ksWkKRWfVL~~--~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s-~s---v~~~~~KK~~FvI~ 159 (875)
.+|||++++. ..++|++|||||.+ ..|.||+++.+..+.+ .+.|..+..... .. ......+.++|.+.
T Consensus 1 ~~G~L~K~g~--~~k~WkkRwFvL~~~~~~L~Yy~~~~~~~~~g----~I~L~~~~~v~~~~~~~~~~~~~~~~~~f~i~ 74 (101)
T cd01235 1 CEGYLYKRGA--LLKGWKPRWFVLDPDKHQLRYYDDFEDTAEKG----CIDLAEVKSVNLAQPGMGAPKHTSRKGFFDLK 74 (101)
T ss_pred CeEEEEEcCC--CCCCccceEEEEECCCCEEEEecCCCCCccce----EEEcceeEEEeecCCCCCCCCCCCCceEEEEE
Confidence 3798887654 46999999999994 4899999887654332 244443321110 00 00011345667665
Q ss_pred ecCCCCceeEEEecchhhHHHHHHHHHhhh
Q 002835 160 PDGRDGRAFTLKAESLEDLYDWKTALENAL 189 (875)
Q Consensus 160 ~~~~dgrty~fQAdSEeE~~eWI~AI~~ai 189 (875)
.. +++|+|+|++++++.+||.||+.+|
T Consensus 75 t~---~r~~~~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 75 TS---KRTYNFLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred eC---CceEEEECCCHHHHHHHHHHHHhhC
Confidence 43 7999999999999999999999865
No 70
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.34 E-value=5.4e-12 Score=112.77 Aligned_cols=91 Identities=23% Similarity=0.392 Sum_probs=66.5
Q ss_pred EEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecCCCC
Q 002835 86 KSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDG 165 (875)
Q Consensus 86 KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~~dg 165 (875)
++|||++++.+ .+.|++|||||+++.|+||+++.... ..+...+.+..|.+.. ...+.++|.|.. .++
T Consensus 1 ~~G~L~k~~~~--~~~W~~r~~vl~~~~L~~~~~~~~~~--~~~~~~i~l~~~~~~~------~~~~~~~F~i~~--~~~ 68 (91)
T cd01246 1 VEGWLLKWTNY--LKGWQKRWFVLDNGLLSYYKNKSSMR--GKPRGTILLSGAVISE------DDSDDKCFTIDT--GGD 68 (91)
T ss_pred CeEEEEEeccc--CCCceeeEEEEECCEEEEEecCccCC--CCceEEEEeceEEEEE------CCCCCcEEEEEc--CCC
Confidence 58998877544 38999999999999999999987541 0111234455554332 223467787764 456
Q ss_pred ceeEEEecchhhHHHHHHHHHhh
Q 002835 166 RAFTLKAESLEDLYDWKTALENA 188 (875)
Q Consensus 166 rty~fQAdSEeE~~eWI~AI~~a 188 (875)
++|+|+|++++|+..||.||+.|
T Consensus 69 ~~~~~~a~s~~e~~~Wi~al~~a 91 (91)
T cd01246 69 KTLHLRANSEEERQRWVDALELA 91 (91)
T ss_pred CEEEEECCCHHHHHHHHHHHHhC
Confidence 99999999999999999999864
No 71
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.34 E-value=4e-12 Score=117.92 Aligned_cols=98 Identities=26% Similarity=0.339 Sum_probs=65.9
Q ss_pred EEeeeEee------cCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEE
Q 002835 86 KSGPLFIS------SKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLF 159 (875)
Q Consensus 86 KEGyL~k~------kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~ 159 (875)
++|||.++ +++...+.|++|||||+++.|+||+++............+.+.++.+.... ....++++|.|.
T Consensus 1 ~~g~l~rk~~~~~~g~~~~~~~Wk~r~~vL~~~~L~~ykd~~~~~~~~~~~~~i~l~~~~i~~~~---~~~k~~~~F~l~ 77 (104)
T cd01253 1 MEGSLERKHELESGGKKASNRSWDNVYGVLCGQSLSFYKDEKMAAENVHGEPPVDLTGAQCEVAS---DYTKKKHVFRLR 77 (104)
T ss_pred CCceEeEEEEeecCCcccCCCCcceEEEEEeCCEEEEEecCcccccCCCCCCcEeccCCEEEecC---CcccCceEEEEE
Confidence 36777742 334457899999999999999999988643222222223444343332210 122456777776
Q ss_pred ecCCCCceeEEEecchhhHHHHHHHHHhh
Q 002835 160 PDGRDGRAFTLKAESLEDLYDWKTALENA 188 (875)
Q Consensus 160 ~~~~dgrty~fQAdSEeE~~eWI~AI~~a 188 (875)
. .+|++|+|+|+++++|..|+.||+.+
T Consensus 78 ~--~~~~~~~f~a~s~e~~~~Wi~aL~~~ 104 (104)
T cd01253 78 L--PDGAEFLFQAPDEEEMSSWVRALKSA 104 (104)
T ss_pred e--cCCCEEEEECCCHHHHHHHHHHHhcC
Confidence 4 46899999999999999999999753
No 72
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=99.33 E-value=5.4e-12 Score=118.42 Aligned_cols=95 Identities=17% Similarity=0.155 Sum_probs=63.6
Q ss_pred EeeeEeecCCC--CccCceeEEEEEeCCe-------EEEecCCCCCCCCCCccceeecCCeeecCCCceeeec--CCcce
Q 002835 87 SGPLFISSKGI--GWTSWKKRWFILTHTS-------LVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKA--DKKLL 155 (875)
Q Consensus 87 EGyL~k~kKg~--~~ksWkKRWfVL~~~s-------L~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~--~KK~~ 155 (875)
+|||.+++... +.++|++|||||+++. |.||+++....+.+ .+.|..|............ ...+.
T Consensus 2 eGwL~K~~~~~~~~~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~~k~~g----~I~L~~~~~v~~~~~~~~~~~~~~~~ 77 (108)
T cd01266 2 EGWLKKSPPYKLLFRTKWVRRYFVLHCGDRERNLFALEYYKTSRKFKLEF----VIDLESCSQVDPGLLCTAGNCIFGYG 77 (108)
T ss_pred ceeeeeCCccccccccCcEEEEEEEeccccCCCcceEEEECCCCCCccce----EEECCccEEEcccccccccCcccceE
Confidence 79998865432 3579999999999876 59999887553322 3455555433211000011 12344
Q ss_pred EEEEecCCCCceeEEEecchhhHHHHHHHHHhh
Q 002835 156 TVLFPDGRDGRAFTLKAESLEDLYDWKTALENA 188 (875)
Q Consensus 156 FvI~~~~~dgrty~fQAdSEeE~~eWI~AI~~a 188 (875)
|.+... .|+|+|+|+|++||++||.+|+.+
T Consensus 78 f~i~t~---~r~y~l~A~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 78 FDIETI---VRDLYLVAKNEEEMTLWVNCICKL 107 (108)
T ss_pred EEEEeC---CccEEEEECCHHHHHHHHHHHHhh
Confidence 555543 689999999999999999999764
No 73
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.33 E-value=8.2e-12 Score=116.20 Aligned_cols=97 Identities=19% Similarity=0.274 Sum_probs=63.5
Q ss_pred EEEEeeeEeecCCCCccCceeEEEEEe-CCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecC
Q 002835 84 VFKSGPLFISSKGIGWTSWKKRWFILT-HTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDG 162 (875)
Q Consensus 84 v~KEGyL~k~kKg~~~ksWkKRWfVL~-~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~ 162 (875)
|+|+|||.+++. ..+.|++|||+|+ ++.|.||++.+..... ..+.+..+.+..+..+.....+.++|.|....
T Consensus 1 v~k~G~L~K~g~--~~~~Wk~R~f~L~~~~~l~~yk~~~~~~~~----~~i~l~~~~v~~~~~~~~~~~~~~~F~i~~~~ 74 (102)
T cd01241 1 VVKEGWLHKRGE--YIKTWRPRYFLLKSDGSFIGYKEKPEDGDP----FLPPLNNFSVAECQLMKTERPRPNTFIIRCLQ 74 (102)
T ss_pred CcEEEEEEeecC--CCCCCeeEEEEEeCCCeEEEEecCCCccCc----cccccCCeEEeeeeeeeccCCCcceEEEEecc
Confidence 469998877654 5699999999999 7789999887643221 12334444443321111123455778876321
Q ss_pred ---CCCceeEEEecchhhHHHHHHHHHhh
Q 002835 163 ---RDGRAFTLKAESLEDLYDWKTALENA 188 (875)
Q Consensus 163 ---~dgrty~fQAdSEeE~~eWI~AI~~a 188 (875)
...| +|+|++++|+++||.||+.+
T Consensus 75 ~~~~~~r--~f~a~s~ee~~eWi~ai~~v 101 (102)
T cd01241 75 WTTVIER--TFHVESPEEREEWIHAIQTV 101 (102)
T ss_pred CCcccCE--EEEeCCHHHHHHHHHHHHhh
Confidence 1234 56799999999999999875
No 74
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=99.31 E-value=1.7e-11 Score=110.01 Aligned_cols=101 Identities=23% Similarity=0.415 Sum_probs=76.2
Q ss_pred EEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCcee--eecCCcceEEEEec
Q 002835 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVV--VKADKKLLTVLFPD 161 (875)
Q Consensus 84 v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~--~~~~KK~~FvI~~~ 161 (875)
++++|||++++ ...+.|++|||||.++.|+||++.... ....+...+.|..+.+....... ......++|.|...
T Consensus 1 ~~~~G~L~~~~--~~~~~wk~r~~vL~~~~L~~~~~~~~~-~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~~~f~i~~~ 77 (104)
T PF00169_consen 1 CIKEGWLLKKS--SSRKKWKKRYFVLRDSYLLYYKSSKDK-SDSKPKGSIPLDDCTVRPDPSSDFLSNKKRKNCFEITTP 77 (104)
T ss_dssp EEEEEEEEEEE--SSSSSEEEEEEEEETTEEEEESSTTTT-TESSESEEEEGTTEEEEEETSSTSTSTSSSSSEEEEEET
T ss_pred CEEEEEEEEEC--CCCCCeEEEEEEEECCEEEEEecCccc-cceeeeEEEEecCceEEEcCccccccccCCCcEEEEEeC
Confidence 57999999888 335899999999999999999998741 11223355777777766532210 12357788888876
Q ss_pred CCCCceeEEEecchhhHHHHHHHHHhhh
Q 002835 162 GRDGRAFTLKAESLEDLYDWKTALENAL 189 (875)
Q Consensus 162 ~~dgrty~fQAdSEeE~~eWI~AI~~ai 189 (875)
.+.+|+|+|+|++++..|+.+|+.++
T Consensus 78 --~~~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 78 --NGKSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp --TSEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred --CCcEEEEEcCCHHHHHHHHHHHHHHh
Confidence 33599999999999999999999876
No 75
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.30 E-value=1.2e-11 Score=118.08 Aligned_cols=100 Identities=20% Similarity=0.231 Sum_probs=67.6
Q ss_pred EEeeeEee------cCCC--CccCceeEEEEEeCCeEEEecCCCCCCCC---CCccceeecCCeeecCCCceeeecCCcc
Q 002835 86 KSGPLFIS------SKGI--GWTSWKKRWFILTHTSLVFFRSDPSAIPQ---KGSEVNLTLGGIDLNNSGSVVVKADKKL 154 (875)
Q Consensus 86 KEGyL~k~------kKg~--~~ksWkKRWfVL~~~sL~yYKd~k~~~p~---~g~e~~i~L~~~~l~~s~sv~~~~~KK~ 154 (875)
|+|+|.+. +++. +.+.|+++||||+++.|++|||+...... ...+..+.+..+.... ...+.|.
T Consensus 2 ~~g~l~RK~~~~~~~kk~~~~~R~Wk~~y~vL~g~~L~~yKDe~~~~~~~~~~~~~~~Isi~~a~~~i-----a~dy~Kr 76 (117)
T cd01230 2 KHGALMRKVHADPDCRKTPFGKRSWKMFYGILRGLVLYLQKDEHKPGKSLSETELKNAISIHHALATR-----ASDYSKK 76 (117)
T ss_pred CCcEEEEEEEecCCCccCCCCCCcceEEEEEEECCEEEEEccCcccccccccccccceEEeccceeEe-----eccccCC
Confidence 68888762 2222 36899999999999999999999742111 0112234444433221 1223333
Q ss_pred eEEEEecCCCCceeEEEecchhhHHHHHHHHHhhhc
Q 002835 155 LTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 155 ~FvI~~~~~dgrty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
.++|.+...+|..|+|||.+++||..||.+|..++.
T Consensus 77 ~~VF~L~~~~g~~~lfqA~~~ee~~~Wi~~I~~~~~ 112 (117)
T cd01230 77 PHVFRLRTADWREFLFQTSSLKELQSWIERINVVAA 112 (117)
T ss_pred CcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHH
Confidence 455555567899999999999999999999998773
No 76
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.28 E-value=1.1e-11 Score=115.00 Aligned_cols=97 Identities=21% Similarity=0.292 Sum_probs=72.3
Q ss_pred EEeeeEeecCCCCccCceeEEEEEeCCeEEE----ecCCC--CCCCCCCccceeecCCeeecCCCceeeecCCcceEEEE
Q 002835 86 KSGPLFISSKGIGWTSWKKRWFILTHTSLVF----FRSDP--SAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLF 159 (875)
Q Consensus 86 KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~y----YKd~k--~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~ 159 (875)
|+||||++.+++...+|.|+||.+.+..-.| +.... +..........+.|..|.+.... ..+|||||+|+
T Consensus 1 k~GYLy~~~k~~~~~~Wvk~y~~~~~~~~~f~m~~~~q~s~~~~~g~v~~~e~~~l~sc~~r~~~----~~dRRFCFei~ 76 (104)
T cd01249 1 KEGYLYMQEKSKFGGSWTKYYCTYSKETRIFTMVPFNQKTKTDMKGAVAQDETLTLKSCSRRKTE----SIDKRFCFDVE 76 (104)
T ss_pred CCceEEEEcCCCCCCeEEEEEEEEEcCCcEEEEEecccccccccCcccccceEEeeeeccccccC----CccceeeEeee
Confidence 6899999999888789999999999863222 33221 00011123345777788887753 56999999999
Q ss_pred ecCCCCceeEEEecchhhHHHHHHHHHh
Q 002835 160 PDGRDGRAFTLKAESLEDLYDWKTALEN 187 (875)
Q Consensus 160 ~~~~dgrty~fQAdSEeE~~eWI~AI~~ 187 (875)
...++ .+++|||+++.++..||.||++
T Consensus 77 ~~~~~-~~~~lQA~Se~~~~~Wi~A~dg 103 (104)
T cd01249 77 VEEKP-GVITMQALSEKDRRLWIEAMDG 103 (104)
T ss_pred ecCCC-CeEEEEecCHHHHHHHHHhhcC
Confidence 88766 4699999999999999999975
No 77
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=99.23 E-value=2.6e-11 Score=133.59 Aligned_cols=143 Identities=19% Similarity=0.260 Sum_probs=122.9
Q ss_pred CCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCC---------------------------CCC-----
Q 002835 242 DGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGK---------------------------TEF----- 289 (875)
Q Consensus 242 ~~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~---------------------------~~~----- 289 (875)
...|.++...+.+.+.+|+.++|++|..+..+...+++..-..|+ +.|
T Consensus 69 ~~~~~~f~~~~~~~e~~~~fte~~s~~~~eksr~~e~k~k~kk~~k~~~aD~~~~~~~~k~~~~~i~Epvvpi~~p~V~r 148 (514)
T KOG4370|consen 69 IPLPSFFRYAIDFVEENGLFTEGISRLSPEKSRLDELKRKAKKGEKMIFADAHDAAGLIKRFLRQIPEPVVPIEFPSVAR 148 (514)
T ss_pred CcCcccchhhhhhhhccccccccccccCcccchhHHHHHhhhhhhhhhHHHHHHHHhHHHHhhhccCCccccccchHHHH
Confidence 346889999999999999999999999988866666655433320 000
Q ss_pred ---------CCCCCchhhHhhHHHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhhCChhHHHHHHHHHHH
Q 002835 290 ---------SPEEDAHIIADCVKYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMM 359 (875)
Q Consensus 290 ---------~~~~D~h~VAslLK~fLReLPePLlp~~ly~~~i~a~~~~~-~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~ 359 (875)
...+.+.+||++||.|||+||++|++.++...|..++.... ....+.++.++. .||++||.++.||+-|
T Consensus 149 ~Ci~e~~~~~~~l~p~tvcSllk~~lr~lpenlLT~el~~rFeev~~h~~~t~~q~efq~llk-~Lp~cNyll~swl~lH 227 (514)
T KOG4370|consen 149 SCIREGLATTTQLTPKTVCSLLKSRLRRLPENLLTVELKTRFEEVFLHAQHTMGQNEFQFLLK-ILPKCNYLLYSWLNLH 227 (514)
T ss_pred HHhhccccchhhcCchhHHHHHHHHHhhcchhhHHHHHHHHHHHHHccchhhHHHHHHHHHHH-hccccchHHHHHHHHH
Confidence 12357899999999999999999999999999999998877 788888988775 9999999999999999
Q ss_pred HHHHHHhhcccCCCccccceeecccc
Q 002835 360 MQTVASSKNQNRMSTSAVAACMAPLL 385 (875)
Q Consensus 360 L~~Va~~S~~NkMta~NLAi~FgPtL 385 (875)
+-.|....-.|||++.||+|+..|++
T Consensus 228 ~d~vi~~e~~~Kln~q~i~i~lspt~ 253 (514)
T KOG4370|consen 228 KDKVIEEEYCLKLNKQQIFINLSPTE 253 (514)
T ss_pred HHHHHHHHHHhhcchhheeeecchHH
Confidence 99999999999999999999999998
No 78
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.23 E-value=3.6e-11 Score=115.45 Aligned_cols=103 Identities=19% Similarity=0.287 Sum_probs=70.9
Q ss_pred EEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCcee-eecCCcceEEEEecCC
Q 002835 85 FKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVV-VKADKKLLTVLFPDGR 163 (875)
Q Consensus 85 ~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~-~~~~KK~~FvI~~~~~ 163 (875)
...|||.+.....+.++|++|||||+++.|.||+.+.+. ....+...+.|..|.+.....+. +...|++.|.|.....
T Consensus 2 ~~~GfL~~~q~~~~~k~W~RRWFvL~g~~L~y~k~p~d~-~~~~Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i~~~~~ 80 (122)
T cd01263 2 EYHGFLTMFEDTSGFGAWHRRWCALEGGEIKYWKYPDDE-KRKGPTGLIDLSTCTSSEGASAVRDICARPNTFHLDVWRP 80 (122)
T ss_pred ccceeEEEEeccCCCCCceEEEEEEeCCEEEEEcCCCcc-ccCCceEEEEhhhCcccccccCChhhcCCCCeEEEEEecc
Confidence 457999985544568999999999999999999977663 22334445777777665543221 1235777777754211
Q ss_pred C--------------C--c-eeEEEecchhhHHHHHHHHHhh
Q 002835 164 D--------------G--R-AFTLKAESLEDLYDWKTALENA 188 (875)
Q Consensus 164 d--------------g--r-ty~fQAdSEeE~~eWI~AI~~a 188 (875)
. . + -|+|.|+|.+|+.+|+.||..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~~ 122 (122)
T cd01263 81 KMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNST 122 (122)
T ss_pred cccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhcC
Confidence 1 1 1 2678899999999999999763
No 79
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.20 E-value=3.5e-11 Score=111.34 Aligned_cols=93 Identities=17% Similarity=0.203 Sum_probs=66.7
Q ss_pred EEeeeEeecCCCCccCceeEEEEEeC----CeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEec
Q 002835 86 KSGPLFISSKGIGWTSWKKRWFILTH----TSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPD 161 (875)
Q Consensus 86 KEGyL~k~kKg~~~ksWkKRWfVL~~----~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~ 161 (875)
+.|||.+++++. .++|++|||+|.+ .+|+||++.++..|.+ .+.|..+.+.+... ....+.+||.+...
T Consensus 1 ~~G~l~K~g~~~-~K~wK~rwF~l~~~~s~~~l~yf~~~~~~~p~g----li~l~~~~V~~v~d--s~~~r~~cFel~~~ 73 (98)
T cd01245 1 KKGNLLKRTKSV-TKLWKTLYFALILDGSRSHESLLSSPKKTKPIG----LIDLSDAYLYPVHD--SLFGRPNCFQIVER 73 (98)
T ss_pred CCCccccCCCCc-ccccceeEEEEecCCCCceEEEEcCCCCCCccc----eeeccccEEEEccc--cccCCCeEEEEecC
Confidence 358888776543 6999999999987 8999999888764422 23445554443211 11267799999865
Q ss_pred CCCCceeEEEecchhhHHHHHHHHHh
Q 002835 162 GRDGRAFTLKAESLEDLYDWKTALEN 187 (875)
Q Consensus 162 ~~dgrty~fQAdSEeE~~eWI~AI~~ 187 (875)
.. +.+|+++|++ +|+++||.+|+.
T Consensus 74 ~~-~~~y~~~a~~-~er~~Wi~~l~~ 97 (98)
T cd01245 74 AL-PTVYYSCRSS-EERDKWIESLQA 97 (98)
T ss_pred CC-CeEEEEeCCH-HHHHHHHHHHhc
Confidence 22 2589999999 999999999975
No 80
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.20 E-value=5.2e-11 Score=110.32 Aligned_cols=81 Identities=22% Similarity=0.248 Sum_probs=55.0
Q ss_pred ccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecCCCCceeEEEecchhhH
Q 002835 99 WTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDL 178 (875)
Q Consensus 99 ~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~~dgrty~fQAdSEeE~ 178 (875)
.++|++|||+|+++.|.||+++... + . -.|.|..+....... .....+.++|.|..+ .++|||+|++++|+
T Consensus 18 ~~n~KkRwF~Lt~~~L~Y~k~~~~~-~-~---g~I~L~~i~~ve~v~-~~~~~~~~~fqivt~---~r~~yi~a~s~~E~ 88 (98)
T cd01244 18 VLHFKKRYFQLTTTHLSWAKDVQCK-K-S---ALIKLAAIKGTEPLS-DKSFVNVDIITIVCE---DDTMQLQFEAPVEA 88 (98)
T ss_pred CcCCceeEEEECCCEEEEECCCCCc-e-e---eeEEccceEEEEEcC-CcccCCCceEEEEeC---CCeEEEECCCHHHH
Confidence 4899999999999999999976532 1 1 123333222110000 001234578888765 58999999999999
Q ss_pred HHHHHHHHhh
Q 002835 179 YDWKTALENA 188 (875)
Q Consensus 179 ~eWI~AI~~a 188 (875)
++||.||+.+
T Consensus 89 ~~Wi~al~k~ 98 (98)
T cd01244 89 TDWLNALEKQ 98 (98)
T ss_pred HHHHHHHhcC
Confidence 9999999863
No 81
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=7.6e-11 Score=124.25 Aligned_cols=102 Identities=24% Similarity=0.467 Sum_probs=76.5
Q ss_pred EEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecCC
Q 002835 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGR 163 (875)
Q Consensus 84 v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~~ 163 (875)
..++|||++.+.+ ..++||+|||||++++|+||.-..+.-|.+ .++|....++.. +...|.+||.+.....
T Consensus 260 pdREGWLlKlgg~-rvktWKrRWFiLtdNCLYYFe~tTDKEPrG----IIpLeNlsir~V----edP~kP~cfEly~ps~ 330 (395)
T KOG0930|consen 260 PDREGWLLKLGGN-RVKTWKRRWFILTDNCLYYFEYTTDKEPRG----IIPLENLSIREV----EDPKKPNCFELYIPSN 330 (395)
T ss_pred ccccceeeeecCC-cccchhheeEEeecceeeeeeeccCCCCCc----ceeccccceeec----cCCCCCCeEEEecCCC
Confidence 3689999998654 469999999999999999987665543332 244555544432 3457889998875422
Q ss_pred ------------CCc-------eeEEEecchhhHHHHHHHHHhhhccCCC
Q 002835 164 ------------DGR-------AFTLKAESLEDLYDWKTALENALAQAPS 194 (875)
Q Consensus 164 ------------dgr-------ty~fQAdSEeE~~eWI~AI~~ai~~aP~ 194 (875)
||| .|.++|.+.+|+.+||.+|+.++...|-
T Consensus 331 ~gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is~~Pf 380 (395)
T KOG0930|consen 331 KGQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAISRDPF 380 (395)
T ss_pred CcCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhccCcH
Confidence 333 8999999999999999999999965554
No 82
>KOG3565 consensus Cdc42-interacting protein CIP4 [Cytoskeleton]
Probab=99.13 E-value=7.4e-11 Score=140.05 Aligned_cols=146 Identities=21% Similarity=0.300 Sum_probs=130.6
Q ss_pred CCCcHHHHHHHHHHHHhCCccCCeee-cCCCHHHHHHHHHHHhcCCCCC--CCCCCchhhHhhHHHHHhhCCCC-CCChh
Q 002835 242 DGTPSFLEKAIRFIEEHGVQVEGILR-QAAYVDDVHRRIREFEQGKTEF--SPEEDAHIIADCVKYVIRELPSS-PVPAS 317 (875)
Q Consensus 242 ~~VP~~L~kcI~~Le~~Gl~~EGIFR-~sG~~~~V~~Lk~~ld~g~~~~--~~~~D~h~VAslLK~fLReLPeP-Llp~~ 317 (875)
..||.+|..|+.+++.+|+..+|||| +++....|...+..+..|.... ..+.+... |.+||.|+|.|.+| +|+++
T Consensus 216 q~iP~i~d~~~~l~~~~~l~~~~i~~k~s~~e~~v~~~~~k~~~g~~~~~~~~~~~~dS-a~vlk~~~~~le~P~~f~~e 294 (640)
T KOG3565|consen 216 QFIPLIVDSLQRLEERRGLRLEGILRKVSGSESSVNDIISKCERGMRLAVGLNDPDLDS-AGVLKLYFRGLEEPADFPFE 294 (640)
T ss_pred ccccHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhccCcchhH-HHHHHHHHccCCCcccCccc
Confidence 35999999999999999999999999 8999999999999999983221 12334555 99999999999999 99999
Q ss_pred hHHHHHHHHhcCc-hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCccccceeecccccCCC
Q 002835 318 CCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPL 389 (875)
Q Consensus 318 ly~~~i~a~~~~~-~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NLAi~FgPtLLrp~ 389 (875)
.|..|+.+....+ .+++..++.++. .+|..+..++.+|+.|+...+.++..|.|++.|+|+||||+++.-+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~L~-~~~~~~~~~~~~l~~f~~~l~~~~~~~~~~~~n~~~~~g~~~~~~~ 366 (640)
T KOG3565|consen 295 DFGQPHDCAARDNLLSRALHVRKLLK-SLPNQVGIELRKLFAFLSKLSQLSDENMMDPYNLAICFGPTLEPVP 366 (640)
T ss_pred cccchhhhhhhcCchhhhhhhhhhhh-ccccHHHHHHHHHHHhhhhhhhhccccccCccccccccccccccCc
Confidence 9999999998888 777788888886 8999999999999999999999999999999999999999997654
No 83
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=99.11 E-value=1.3e-10 Score=111.23 Aligned_cols=99 Identities=22% Similarity=0.370 Sum_probs=58.7
Q ss_pred EEeeeEee------cCCC--CccCceeEEEEEeCCeEEEecCCCCCC---CC--CC-----ccceeecCCeeecCCCcee
Q 002835 86 KSGPLFIS------SKGI--GWTSWKKRWFILTHTSLVFFRSDPSAI---PQ--KG-----SEVNLTLGGIDLNNSGSVV 147 (875)
Q Consensus 86 KEGyL~k~------kKg~--~~ksWkKRWfVL~~~sL~yYKd~k~~~---p~--~g-----~e~~i~L~~~~l~~s~sv~ 147 (875)
|+|||.+. +++. ..++|+..|+||+++.|+|||+..... +. .. +...+.|..+....+ .
T Consensus 2 keG~l~RK~~~~~~gkk~~~~~R~Wk~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~a~a~~a---~ 78 (119)
T PF15410_consen 2 KEGILMRKHELESGGKKASRSKRSWKQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHHALAEIA---S 78 (119)
T ss_dssp -EEEEEEEEEEECTTCC---S---EEEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-TT-EEEEE---T
T ss_pred ceEEEEEEEEEcCCCCCcCCCCCCccEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEecceEEEeC---c
Confidence 78998862 3344 678999999999999999999953211 00 00 112244444433321 1
Q ss_pred eecCCcceEEEEecCCCCceeEEEecchhhHHHHHHHHHhhh
Q 002835 148 VKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENAL 189 (875)
Q Consensus 148 ~~~~KK~~FvI~~~~~dgrty~fQAdSEeE~~eWI~AI~~ai 189 (875)
+...|++.|.+. +.+|..|+|||.|+++|..||.+|.-+.
T Consensus 79 dY~Kr~~VFrL~--~~dg~e~Lfqa~~~~~m~~Wi~~IN~~A 118 (119)
T PF15410_consen 79 DYTKRKNVFRLR--TADGSEYLFQASDEEEMNEWIDAINYAA 118 (119)
T ss_dssp TBTTCSSEEEEE---TTS-EEEEE-SSHHHHHHHHHHHHHH-
T ss_pred ccccCCeEEEEE--eCCCCEEEEECCCHHHHHHHHHHHhhhc
Confidence 233455555555 6689999999999999999999998654
No 84
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.10 E-value=2.9e-10 Score=105.99 Aligned_cols=92 Identities=20% Similarity=0.330 Sum_probs=71.6
Q ss_pred ecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecCCC-CceeEEE
Q 002835 93 SSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRD-GRAFTLK 171 (875)
Q Consensus 93 ~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~~d-grty~fQ 171 (875)
+-++..++.|++|||+|++..|+|||+..+.. +.+.+.+.+.+|.+.+...+ ..+++++.+..+..+ .++|+|.
T Consensus 11 ~~~~~~~K~~KrrwF~lk~~~L~YyK~kee~~--~~p~i~lnl~gcev~~dv~~---~~~kf~I~l~~ps~~~~r~y~l~ 85 (106)
T cd01237 11 KPKKLTLKGYKQYWFTFRDTSISYYKSKEDSN--GAPIGQLNLKGCEVTPDVNV---AQQKFHIKLLIPTAEGMNEVWLR 85 (106)
T ss_pred CcchhhhhhheeEEEEEeCCEEEEEccchhcC--CCCeEEEecCceEEcccccc---cccceEEEEecCCccCCeEEEEE
Confidence 34455678999999999999999999877642 44567788999998876432 345677777655333 3799999
Q ss_pred ecchhhHHHHHHHHHhhh
Q 002835 172 AESLEDLYDWKTALENAL 189 (875)
Q Consensus 172 AdSEeE~~eWI~AI~~ai 189 (875)
|+|++++..||.|++-|.
T Consensus 86 cdsEeqya~Wmaa~rlas 103 (106)
T cd01237 86 CDNEKQYAKWMAACRLAS 103 (106)
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 999999999999998764
No 85
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=99.03 E-value=8.8e-10 Score=104.45 Aligned_cols=98 Identities=24% Similarity=0.438 Sum_probs=51.1
Q ss_pred EEeeeEeecCCCCccCceeEEEEEe-CCeEEEecCCCCCC--------CC---CCccceeecCCeeecCC--CceeeecC
Q 002835 86 KSGPLFISSKGIGWTSWKKRWFILT-HTSLVFFRSDPSAI--------PQ---KGSEVNLTLGGIDLNNS--GSVVVKAD 151 (875)
Q Consensus 86 KEGyL~k~kKg~~~ksWkKRWfVL~-~~sL~yYKd~k~~~--------p~---~g~e~~i~L~~~~l~~s--~sv~~~~~ 151 (875)
|+|||++.... .++.|++|||+|. ++.|.|||.+.... +. ..+..........+... ... ....
T Consensus 1 k~G~l~K~~~~-~~kgWk~RwFiL~k~~~L~YyK~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 78 (112)
T PF15413_consen 1 KEGYLYKWGNK-FGKGWKKRWFILRKDGVLSYYKIPRDKKDVRIIGEESSRVIRKGDWSISRRSSRIQGIKDKNP-FGEI 78 (112)
T ss_dssp EEEEEEE--TT-S-S--EEEEEEEE-TTEEEEESS-------------TT-SB-SEEEE---GGGT-EEEES-T---SS-
T ss_pred CCceEEEecCC-CCcCccccEEEEEeCCEEEEeecccccccccccccchhceEeecccCcccccccccccccCCc-ccCc
Confidence 68999988877 4689999999999 99999999832211 00 00001110000000000 000 0111
Q ss_pred CcceEEEEecCCCCceeEEEecchhhHHHHHHHHHhh
Q 002835 152 KKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENA 188 (875)
Q Consensus 152 KK~~FvI~~~~~dgrty~fQAdSEeE~~eWI~AI~~a 188 (875)
-...|.+.+. .++|+|.|++.+|+.+||.||+.|
T Consensus 79 ~~~~~~i~T~---~kt~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 79 HLKVFSIFTP---TKTFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp SSEEEEEE-S---S-EEEEEESSHHHHHHHHHHHHH-
T ss_pred CCCCcEEECC---CcEEEEEECCHHHHHHHHHHHHhC
Confidence 2222344333 589999999999999999999864
No 86
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.97 E-value=3.4e-09 Score=98.54 Aligned_cols=98 Identities=14% Similarity=0.266 Sum_probs=69.8
Q ss_pred EEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCC-CccceeecCCeeecCCCceeeecCCcceEEEEecC
Q 002835 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQK-GSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDG 162 (875)
Q Consensus 84 v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~-g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~ 162 (875)
.+|+|||.+...+. +.|+.|||.|-++.|.||+......... ...-.+.+.++.+.... ....+++|.|...
T Consensus 2 ~ikeG~L~K~~~~~--~~~k~RyffLFnd~Ll~~~~~~~~~~~~y~~~~~i~l~~~~v~~~~----~~~~~~~F~I~~~- 74 (101)
T cd01219 2 LLKEGSVLKISSTT--EKTEERYLFLFNDLLLYCVPRKMIGGSKFKVRARIDVSGMQVCEGD----NLERPHSFLVSGK- 74 (101)
T ss_pred cccceEEEEEecCC--CCceeEEEEEeCCEEEEEEcccccCCCcEEEEEEEecccEEEEeCC----CCCcCceEEEecC-
Confidence 57999888776554 7999999999999999999543211000 01122555556554321 2346778888765
Q ss_pred CCCceeEEEecchhhHHHHHHHHHhhhc
Q 002835 163 RDGRAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 163 ~dgrty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
.++|+|+|+|++|+.+||.||..++.
T Consensus 75 --~rsf~l~A~s~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 75 --QRCLELQARTQKEKNDWVQAIFSIID 100 (101)
T ss_pred --CcEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 48999999999999999999999873
No 87
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=98.93 E-value=9.8e-09 Score=90.24 Aligned_cols=100 Identities=30% Similarity=0.494 Sum_probs=70.3
Q ss_pred EEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecCCC
Q 002835 85 FKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRD 164 (875)
Q Consensus 85 ~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~~d 164 (875)
.++|||++...+ ....|++|||+|.++.|.||++...... ......+.+..+.+...... ......++|.|... +
T Consensus 2 ~~~G~l~~~~~~-~~~~~~~~~~~L~~~~l~~~~~~~~~~~-~~~~~~i~l~~~~v~~~~~~-~~~~~~~~f~l~~~--~ 76 (102)
T smart00233 2 IKEGWLYKKSGG-KKKSWKKRYFVLFNSTLLYYKSEKAKKD-YKPKGSIDLSGITVREAPDP-DSAKKPHCFEIKTA--D 76 (102)
T ss_pred ceeEEEEEeCCC-ccCCceEEEEEEECCEEEEEeCCCcccc-CCCceEEECCcCEEEeCCCC-ccCCCceEEEEEec--C
Confidence 589999987764 3578999999999999999998764311 12223355555544432110 00135677887764 3
Q ss_pred CceeEEEecchhhHHHHHHHHHhhh
Q 002835 165 GRAFTLKAESLEDLYDWKTALENAL 189 (875)
Q Consensus 165 grty~fQAdSEeE~~eWI~AI~~ai 189 (875)
+.+|+|+|++++++..|+.+|+.++
T Consensus 77 ~~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 77 RRSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHhh
Confidence 3589999999999999999998765
No 88
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.91 E-value=5.7e-09 Score=100.24 Aligned_cols=82 Identities=23% Similarity=0.427 Sum_probs=55.6
Q ss_pred CceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCC--------ceeeecCCcceEEEEecCCCCceeEEEe
Q 002835 101 SWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSG--------SVVVKADKKLLTVLFPDGRDGRAFTLKA 172 (875)
Q Consensus 101 sWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~--------sv~~~~~KK~~FvI~~~~~dgrty~fQA 172 (875)
.|++|||||+++.|.||+++.+..+.. .+.++ ....+.... .+.....+++.|.|... .|+|.|.|
T Consensus 32 ~w~kRWFvlr~s~L~Y~~~~~~~~~~~--vil~D-~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~i~t~---~R~~~l~a 105 (121)
T cd01254 32 RWQKRWFIVKESFLAYMDDPSSAQILD--VILFD-VDFKVNGGGKEDISLAVELKDITGLRHGLKITNS---NRSLKLKC 105 (121)
T ss_pred CCcceeEEEeCCEEEEEcCCCCCceee--EEEEc-CCccEEeCCcccccccccccccCCCceEEEEEcC---CcEEEEEe
Confidence 799999999999999999887643321 11111 111111110 01122456777777655 79999999
Q ss_pred cchhhHHHHHHHHHhh
Q 002835 173 ESLEDLYDWKTALENA 188 (875)
Q Consensus 173 dSEeE~~eWI~AI~~a 188 (875)
+|+.++++|+++|+.|
T Consensus 106 ~s~~~~~~Wi~~i~~a 121 (121)
T cd01254 106 KSSRKLKQWMASIEDA 121 (121)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 9999999999999864
No 89
>PF15409 PH_8: Pleckstrin homology domain
Probab=98.90 E-value=5.1e-09 Score=95.21 Aligned_cols=86 Identities=24% Similarity=0.426 Sum_probs=61.1
Q ss_pred eeeEeecCCCCccCceeEEEEE--eCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecCCCC
Q 002835 88 GPLFISSKGIGWTSWKKRWFIL--THTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDG 165 (875)
Q Consensus 88 GyL~k~kKg~~~ksWkKRWfVL--~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~~dg 165 (875)
|||.+.++.. .+.|+|||||| ..+.|.||+++.+.. .. +. +.+..+.+. ...+..++.|... .
T Consensus 1 G~llKkrr~~-lqG~~kRyFvL~~~~G~LsYy~~~~~~~-~r-Gs--i~v~~a~is-------~~~~~~~I~idsg---~ 65 (89)
T PF15409_consen 1 GWLLKKRRKP-LQGWHKRYFVLDFEKGTLSYYRNQNSGK-LR-GS--IDVSLAVIS-------ANKKSRRIDIDSG---D 65 (89)
T ss_pred Ccceeecccc-CCCceeEEEEEEcCCcEEEEEecCCCCe-eE-eE--EEccceEEE-------ecCCCCEEEEEcC---C
Confidence 7888876665 58999999999 899999999876541 11 11 222322222 1234455666543 6
Q ss_pred ceeEEEecchhhHHHHHHHHHhh
Q 002835 166 RAFTLKAESLEDLYDWKTALENA 188 (875)
Q Consensus 166 rty~fQAdSEeE~~eWI~AI~~a 188 (875)
.+|+|.|.++++++.|+.||+.+
T Consensus 66 ~i~hLKa~s~~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 66 EIWHLKAKSQEDFQRWVSALQKA 88 (89)
T ss_pred eEEEEEcCCHHHHHHHHHHHHhc
Confidence 79999999999999999999864
No 90
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=98.77 E-value=9.3e-10 Score=133.68 Aligned_cols=166 Identities=16% Similarity=0.229 Sum_probs=113.8
Q ss_pred eecCCchhhHhhhccchhhhcccceecccC-CCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCc
Q 002835 5 QIFPPTHSIFAESCNHDAGDLVIGIWSVKA-PNGLRRKNLSGDAGTPPMATNPPGGPPSGQPPGPPPGPNDHRITRAGNA 83 (875)
Q Consensus 5 ~~~~~~~~~~~~df~~y~~~L~~~lq~tR~-~~~tR~~~esl~~~~~km~~~p~~~~~~~~~p~~~~~p~~~~~~~~~~~ 83 (875)
-||+.|+ .+...++||+.++...||.+|. ++..++.++.. +......-....-...-...|+..+. ...
T Consensus 204 ~fF~~g~-~l~~~m~p~~~~i~~~v~ql~~~~~~e~~am~~~---~q~l~~~~~~~~~~~~~~~~~~~~~~------~~~ 273 (785)
T KOG0521|consen 204 NFFKQGE-DLLSQMDPYIKKVATYVQQLREESDAEQRAMEQR---YQELRSASNLESRPKSDSASPSGGNL------KLG 273 (785)
T ss_pred chhcccH-hHHhhhhHHHHHHHHHHHHHHHhhHHHHHHHHhH---HHHHHHHhhhhhhccccccccccccc------cch
Confidence 5899997 8999999999999999999999 87776666533 11111100000000000000111010 112
Q ss_pred EEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecCC
Q 002835 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGR 163 (875)
Q Consensus 84 v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~~ 163 (875)
..+.||||+..... .+.|+||||-..++.+.|++.-..... .+...|..|.++... ...++++||.|+..
T Consensus 274 ~~~~~~l~~k~~~~-~~tw~r~~f~~q~~~l~~~~r~~~~~~----~~~~dL~~csvk~~~---~~~drr~CF~iiS~-- 343 (785)
T KOG0521|consen 274 YRMEGYLRKKASNA-SKTWKRRWFSIQDGQLGYQHRGADAEN----VLIEDLRTCSVKPDA---EQRDRRFCFEIISP-- 343 (785)
T ss_pred hhhhhhhhhhcccc-hhhHHhhhhhhhccccccccccccccc----cccccchhccccCCc---ccccceeeEEEecC--
Confidence 56778787666553 699999999999999999886554421 355777888877652 34589999999874
Q ss_pred CCceeEEEecchhhHHHHHHHHHhhhcc
Q 002835 164 DGRAFTLKAESLEDLYDWKTALENALAQ 191 (875)
Q Consensus 164 dgrty~fQAdSEeE~~eWI~AI~~ai~~ 191 (875)
.++|+|||+++.+..+||.+|++.+..
T Consensus 344 -tks~~lQAes~~d~~~Wi~~i~nsi~s 370 (785)
T KOG0521|consen 344 -TKSYLLQAESEKDCQDWISALQNSILS 370 (785)
T ss_pred -CcceEEecCchhHHHHHHHHHHHHHHH
Confidence 689999999999999999999998753
No 91
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.73 E-value=4.7e-08 Score=85.14 Aligned_cols=95 Identities=27% Similarity=0.525 Sum_probs=65.9
Q ss_pred EEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecCCCC
Q 002835 86 KSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDG 165 (875)
Q Consensus 86 KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~~dg 165 (875)
++|||++...+. ...|+++||+|.++.|.+|+...... ...+...+.+..+.+.... ......++|.|... .+
T Consensus 1 ~~G~l~~~~~~~-~~~w~~~~~~L~~~~l~~~~~~~~~~-~~~~~~~i~l~~~~v~~~~---~~~~~~~~f~i~~~--~~ 73 (96)
T cd00821 1 KEGYLLKKTGKL-RKGWKRRWFVLFNDLLLYYKKKSSKK-SYKPKGSIPLSGAEVEESP---DDSGRKNCFEIRTP--DG 73 (96)
T ss_pred CcchhhhhhChh-hCCccEEEEEEECCEEEEEECCCCCc-CCCCcceEEcCCCEEEECC---CcCCCCcEEEEecC--CC
Confidence 479888766554 47899999999999999998776431 1112233445544444321 01124678888765 34
Q ss_pred ceeEEEecchhhHHHHHHHHHh
Q 002835 166 RAFTLKAESLEDLYDWKTALEN 187 (875)
Q Consensus 166 rty~fQAdSEeE~~eWI~AI~~ 187 (875)
+.|+|+|++++++..|+.+|+.
T Consensus 74 ~~~~~~~~s~~~~~~W~~~l~~ 95 (96)
T cd00821 74 RSYLLQAESEEEREEWIEALQS 95 (96)
T ss_pred cEEEEEeCCHHHHHHHHHHHhc
Confidence 8999999999999999999975
No 92
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=98.68 E-value=1.4e-07 Score=82.69 Aligned_cols=96 Identities=25% Similarity=0.442 Sum_probs=67.0
Q ss_pred EeeeEeecCCC--CccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecCCC
Q 002835 87 SGPLFISSKGI--GWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRD 164 (875)
Q Consensus 87 EGyL~k~kKg~--~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~~d 164 (875)
+|||.+..... ....|++|||+|.+..|.||++........ ..+.+..+.+.... ......++|.|......
T Consensus 2 ~g~l~~~~~~~~~~~~~w~~~~~~l~~~~l~~~~~~~~~~~~~---~~~~l~~~~v~~~~---~~~~~~~~F~i~~~~~~ 75 (99)
T cd00900 2 EGYLLKLGSDDVSKGKRWKRRWFFLFDDGLLLYKSDDKKEIKP---GSIPLSEISVEEDP---DGSDDPNCFAIVTKDRG 75 (99)
T ss_pred ccEEEEeCCCccccccCceeeEEEEECCEEEEEEcCCCCcCCC---CEEEccceEEEECC---CCCCCCceEEEECCCCC
Confidence 68887766554 257999999999999999999887543211 12444444433221 01135688888754223
Q ss_pred CceeEEEecchhhHHHHHHHHHhh
Q 002835 165 GRAFTLKAESLEDLYDWKTALENA 188 (875)
Q Consensus 165 grty~fQAdSEeE~~eWI~AI~~a 188 (875)
.+.|+|+|++++++..|+.+|..+
T Consensus 76 ~~~~~~~~~~~~~~~~W~~al~~~ 99 (99)
T cd00900 76 RRVFVFQADSEEEAQEWVEALQQA 99 (99)
T ss_pred cEEEEEEcCCHHHHHHHHHHHhcC
Confidence 689999999999999999999864
No 93
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.64 E-value=1.5e-07 Score=86.23 Aligned_cols=99 Identities=29% Similarity=0.440 Sum_probs=74.7
Q ss_pred EEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecC-
Q 002835 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDG- 162 (875)
Q Consensus 84 v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~- 162 (875)
|++.|||-+..-+.....=|.|||||+..+|+|||+..+..+ ...+.|.++.++.... .-..+++||.+.-..
T Consensus 1 virkgwl~~~n~~~m~ggsK~~WFVLt~~~L~wykd~eeKE~----kyilpLdnLk~Rdve~--gf~sk~~~FeLfnpd~ 74 (110)
T cd01256 1 VIRKGWLSISNVGIMKGGSKDYWFVLTSESLSWYKDDEEKEK----KYMLPLDGLKLRDIEG--GFMSRNHKFALFYPDG 74 (110)
T ss_pred CeeeeeEEeeccceecCCCcceEEEEecceeeeecccccccc----cceeeccccEEEeecc--cccCCCcEEEEEcCcc
Confidence 578899999877665455699999999999999999876533 2457778777775421 014688999987432
Q ss_pred ----CCCceeEEEecchhhHHHHHHHHHhh
Q 002835 163 ----RDGRAFTLKAESLEDLYDWKTALENA 188 (875)
Q Consensus 163 ----~dgrty~fQAdSEeE~~eWI~AI~~a 188 (875)
.+.++.-|+|++.+++..|...+-.|
T Consensus 75 rnvykd~k~lel~~~~~e~vdswkasflra 104 (110)
T cd01256 75 RNVYKDYKQLELGCETLEEVDSWKASFLRA 104 (110)
T ss_pred cccccchheeeecCCCHHHHHHHHHHHHhc
Confidence 24468899999999999999887554
No 94
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.63 E-value=4.3e-08 Score=90.37 Aligned_cols=99 Identities=19% Similarity=0.379 Sum_probs=67.6
Q ss_pred EEEeeeEeecCCCCccCceeEEEEEeCCe-----EEEecCCCCCCCCCCccceeecCCeeecCCCcee-------eecCC
Q 002835 85 FKSGPLFISSKGIGWTSWKKRWFILTHTS-----LVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVV-------VKADK 152 (875)
Q Consensus 85 ~KEGyL~k~kKg~~~ksWkKRWfVL~~~s-----L~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~-------~~~~K 152 (875)
.++|||++.++.. +++|+||||+|++-+ ++-|+..+.. +...+.|.+.++.-..... .-...
T Consensus 3 k~sGyL~k~Gg~~-~KkWKKRwFvL~qvsQYtfamcsy~ekks~-----P~e~~qldGyTvDy~~~~~~~~~~~~~~~gg 76 (117)
T cd01234 3 KHCGYLYAIGKNV-WKKWKKRFFVLVQVSQYTFAMCSYREKKAE-----PTEFIQLDGYTVDYMPESDPDPNSELSLQGG 76 (117)
T ss_pred ceeEEEEeccchh-hhhhheeEEEEEchhHHHHHHHhhhhhcCC-----chhheeecceEEeccCCCCCCcccccccccc
Confidence 4899999877655 799999999999764 3446655432 1223445555554433221 12245
Q ss_pred cceEEEEecCCCCceeEEEecchhhHHHHHHHHHhhhccC
Q 002835 153 KLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQA 192 (875)
Q Consensus 153 K~~FvI~~~~~dgrty~fQAdSEeE~~eWI~AI~~ai~~a 192 (875)
+++|..+- .|-+..|..++|.|+..|++||-.|.+++
T Consensus 77 ~~ff~avk---egd~~~fa~~de~~r~lwvqa~yratgqs 113 (117)
T cd01234 77 RHFFNAVK---EGDELKFATDDENERHLWVQAMYRATGQS 113 (117)
T ss_pred hhhhheec---cCcEEEEeccchHHHHHHHHHHHHHcCcc
Confidence 66665543 37889999999999999999999888654
No 95
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.56 E-value=3.9e-07 Score=84.78 Aligned_cols=97 Identities=20% Similarity=0.228 Sum_probs=62.9
Q ss_pred EEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecCC
Q 002835 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGR 163 (875)
Q Consensus 84 v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~~ 163 (875)
.++||+|.+..++. .|.|+||.+.+ .|+|+...............+.|.++.+.... ......+||.|...
T Consensus 2 ~ikEG~L~K~~~k~---~~~R~~FLFnD-~LlY~~~~~~~~~~y~~~~~i~L~~~~V~~~~---~~~~~~~~F~I~~~-- 72 (99)
T cd01220 2 FIRQGCLLKLSKKG---LQQRMFFLFSD-LLLYTSKSPTDQNSFRILGHLPLRGMLTEESE---HEWGVPHCFTIFGG-- 72 (99)
T ss_pred eeeEEEEEEEeCCC---CceEEEEEccc-eEEEEEeecCCCceEEEEEEEEcCceEEeecc---CCcCCceeEEEEcC--
Confidence 58999999876543 57766666655 45555432211000011123566666655421 11245789999865
Q ss_pred CCceeEEEecchhhHHHHHHHHHhhhc
Q 002835 164 DGRAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 164 dgrty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
.+.|+|+|.|++|+.+||.+|..+|.
T Consensus 73 -~ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 73 -QCAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred -CeEEEEECCCHHHHHHHHHHHHHHhh
Confidence 68999999999999999999999883
No 96
>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=98.47 E-value=1.2e-07 Score=110.14 Aligned_cols=167 Identities=13% Similarity=0.160 Sum_probs=136.9
Q ss_pred cCCCCCccccChhHhhhcCCCCcHHHHHHHHHHHHhCCccCCeeecCC----CHHHHHHHHHHHhc-CCCCCCCCCCchh
Q 002835 223 KPVKFPVIGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAA----YVDDVHRRIREFEQ-GKTEFSPEEDAHI 297 (875)
Q Consensus 223 K~~k~~vFGvpLe~ll~~~~~VP~~L~kcI~~Le~~Gl~~EGIFR~sG----~~~~V~~Lk~~ld~-g~~~~~~~~D~h~ 297 (875)
+..+...||+||+..+.+++.+|..|......|...+..++++||..- +.+.-......+.. |.....+...+|+
T Consensus 410 ~~l~kv~fdaPlS~~c~d~gk~prPlq~~~tll~kknp~tpn~fprt~~~Alv~ks~s~~s~dd~s~gr~vdv~sspv~t 489 (741)
T KOG4724|consen 410 SELAKVPFDAPLSVFCADQGKTPRPLQIQSTLLKKKNPATPNVFPRTNDEALVLKAFSSSSLDDSSDGRPVDVPSSPVHT 489 (741)
T ss_pred hhhhhCcCCCchhhcccccCCCCCChhhhhHHHHhcCCCCCccCCCccchhhhhhcccccchhhhccCCcccCCCCCchH
Confidence 345578899999999999999999998888899999999999998833 22222222233333 5555555668999
Q ss_pred hHhhHHHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHH-------HHHhhCChhHHHHHHHHHHHHHHHHHhhcc
Q 002835 298 IADCVKYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRT-------AILETFPEPNRKLLQRILMMMQTVASSKNQ 369 (875)
Q Consensus 298 VAslLK~fLReLPePLlp~~ly~~~i~a~~~~~-~eri~~i~~-------LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~ 369 (875)
+++++|.|+|.+|..++..+.+.+++.+....+ +++.++++. .+..+.|..+..+....+.-...+..++..
T Consensus 490 aasv~KdfnRKtpRgi~sr~ihke~~ea~~lq~EedrtEaLk~~~gks~~fv~~~~Prg~s~~~shsvf~~~i~S~nse~ 569 (741)
T KOG4724|consen 490 AASVHKDFNRKTPRGIPSREIHKESMEATFLQHEEDRTEALKAGSGKSQDFVRDHVPRGGSNVRKHSVFAGRIVSENSEE 569 (741)
T ss_pred HHHHHHHhhhhcCCCccchHHHHHhhhhhhccchHHHHHHHHhhcCCcccccccCCCCCcccccccccccceeccccccc
Confidence 999999999999999999999999999998888 789999987 133588999898888888888888999999
Q ss_pred cCCCccccceeecccccCCC
Q 002835 370 NRMSTSAVAACMAPLLLRPL 389 (875)
Q Consensus 370 NkMta~NLAi~FgPtLLrp~ 389 (875)
+.|+..|++.|..|+++.-.
T Consensus 570 ~s~dsSn~~~csrpn~~tvd 589 (741)
T KOG4724|consen 570 TSNDSSNPGFCSRPNALTVD 589 (741)
T ss_pred ccccccccCCCCCccccchh
Confidence 99999999999999997643
No 97
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.32 E-value=1.4e-06 Score=81.87 Aligned_cols=101 Identities=25% Similarity=0.341 Sum_probs=62.1
Q ss_pred EEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCC--CceeeecCCcceEEEEecCC
Q 002835 86 KSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNS--GSVVVKADKKLLTVLFPDGR 163 (875)
Q Consensus 86 KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s--~sv~~~~~KK~~FvI~~~~~ 163 (875)
.+|+||+++-|. ++|+|+||+|+..-|+|+-..+...+..-. .-..+....+-.. .....+.--.|||.|.+...
T Consensus 2 ~~g~LylK~~gk--KsWKk~~f~LR~SGLYy~~Kgksk~srdL~-cl~~f~~~nvY~~~~~kKk~kAPTd~~F~~K~~~~ 78 (114)
T cd01259 2 MEGPLYLKADGK--KSWKKYYFVLRSSGLYYFPKEKTKNTRDLA-CLNLLHGHNVYTGLGWRKKYKSPTDYCFGFKAVGD 78 (114)
T ss_pred ccceEEEccCCC--ccceEEEEEEeCCeeEEccCCCcCCHHHHH-HHHhcccCcEEEEechhhccCCCCCceEEEecccc
Confidence 589999988776 899999999999999987644432221100 0011111111110 00011223457888876432
Q ss_pred C----CceeEEEecchhhHHHHHHHHHhhh
Q 002835 164 D----GRAFTLKAESLEDLYDWKTALENAL 189 (875)
Q Consensus 164 d----grty~fQAdSEeE~~eWI~AI~~ai 189 (875)
. .-..+|||++++.+..||.||+=+-
T Consensus 79 q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~K 108 (114)
T cd01259 79 QSKGSQSIKYLCAEDLPTLDRWLTAIRIAK 108 (114)
T ss_pred CcccchhheeeccCCHHHHHHHHHHHHHHh
Confidence 1 2367899999999999999998554
No 98
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.23 E-value=1e-05 Score=77.21 Aligned_cols=104 Identities=13% Similarity=0.147 Sum_probs=70.6
Q ss_pred EEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCC--Cccceeec--CCeeecCCCce----eeecCCcceE
Q 002835 85 FKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQK--GSEVNLTL--GGIDLNNSGSV----VVKADKKLLT 156 (875)
Q Consensus 85 ~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~--g~e~~i~L--~~~~l~~s~sv----~~~~~KK~~F 156 (875)
-.||||...+.+...+.|+++|+|+.+..|+||..+.+...+. .....+.+ +.+.+...... ....+-.+.|
T Consensus 3 ~~EGwvkvP~~~~~krGW~r~~vVv~~~Kl~lYd~e~~k~~~p~~~~~~vLdlrD~~fsV~~VtasDvi~a~~kDiP~If 82 (122)
T cd01243 3 AYEGHVKIPKPGGVKKGWQRALVVVCDFKLFLYDIAEDRASQPSVVISQVLDMRDPEFSVSSVLESDVIHASKKDIPCIF 82 (122)
T ss_pred cceeeEeccCCCCcccCceEEEEEEeCCEEEEEeCCccccCCccCceeEEEEcCCCCEEEEEecHHHccccCcccCCeEE
Confidence 3799999887766567999999999999999998665432221 22233344 23444322111 1234455667
Q ss_pred EEEec----CCCCceeEEEecchhhHHHHHHHHHhh
Q 002835 157 VLFPD----GRDGRAFTLKAESLEDLYDWKTALENA 188 (875)
Q Consensus 157 vI~~~----~~dgrty~fQAdSEeE~~eWI~AI~~a 188 (875)
.|+.. ...+.+.+|-|+++.|.+.|+.||...
T Consensus 83 ~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l 118 (122)
T cd01243 83 RVTTSQISASSSKCSTLMLADTEEEKSKWVGALSEL 118 (122)
T ss_pred EEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHH
Confidence 77753 234678999999999999999999864
No 99
>PF08101 DUF1708: Domain of unknown function (DUF1708); InterPro: IPR012965 This is a fungal domain of unknown function, though the yeast protein MSB1(P21339 from SWISSPROT) which contains this domain is thought to play a role in bud formation [].
Probab=98.21 E-value=7.9e-06 Score=93.49 Aligned_cols=145 Identities=14% Similarity=0.219 Sum_probs=118.8
Q ss_pred cHHHHHHHHHHHHhCCccCCee---ecCCCHHHHHHHHHHHh-cCCCC--C--------CCCCCchhhHhhHHHHHhhCC
Q 002835 245 PSFLEKAIRFIEEHGVQVEGIL---RQAAYVDDVHRRIREFE-QGKTE--F--------SPEEDAHIIADCVKYVIRELP 310 (875)
Q Consensus 245 P~~L~kcI~~Le~~Gl~~EGIF---R~sG~~~~V~~Lk~~ld-~g~~~--~--------~~~~D~h~VAslLK~fLReLP 310 (875)
=.+|..|...|..+|+++++|| |-.-+...++.++..|- .+... . ....++|+++++||-.+..||
T Consensus 9 ~~li~~~t~elK~rgldtp~lllpfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~~el~~~~~~~L~~~LKw~w~RLp 88 (420)
T PF08101_consen 9 KDLIHACTEELKSRGLDTPFLLLPFRPDSDPSALRRFIRSFFPQGNGSPVLDGEALIQELRFTSPHTLISVLKWIWSRLP 88 (420)
T ss_pred HHHHHHHHHHHHhccCCCchhccCCCCCCCHHHHHHHHHHhCCCccCcccccHHHHHHHHhcCCchHHHHHHHHHHHHcC
Confidence 3478899999999999999998 77778888888777654 33211 0 124599999999999999999
Q ss_pred CCCCChhhHHHHHHHHhcCchHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHHHHhhcccCCCccccceeecccccCCC
Q 002835 311 SSPVPASCCNALLEARRTDRGSRVSAMRTAILETFP-EPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPL 389 (875)
Q Consensus 311 ePLlp~~ly~~~i~a~~~~~~eri~~i~~LI~~~LP-~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NLAi~FgPtLLrp~ 389 (875)
..+|+.+.|..|...-+..+ -...++..+|-..|| +.+..++.-++.+|..|+.|+..|+|+..-|+-.+|+-+|...
T Consensus 89 ~gvVgW~~Y~~Fk~~E~~~~-yp~~AF~~~lp~~l~s~a~~~Iv~dFfdLL~sIaa~s~~NglsgrKlsrm~g~WaF~~~ 167 (420)
T PF08101_consen 89 GGVVGWDSYEEFKRREREAG-YPRDAFLTFLPQCLPSPAHASIVYDFFDLLSSIAAHSKKNGLSGRKLSRMAGIWAFGHP 167 (420)
T ss_pred CCccccHHHHHHHHHHhhcC-CChHHHHHhccccCCChhHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHCCCC
Confidence 99999999999988765554 234566666665674 6678899999999999999999999999999999999999876
Q ss_pred c
Q 002835 390 L 390 (875)
Q Consensus 390 ~ 390 (875)
.
T Consensus 168 ~ 168 (420)
T PF08101_consen 168 D 168 (420)
T ss_pred C
Confidence 4
No 100
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=98.13 E-value=2.2e-06 Score=93.54 Aligned_cols=100 Identities=20% Similarity=0.259 Sum_probs=67.6
Q ss_pred EEEEeeeEeecCCCCccCceeEEEEEe-CCeEEEecCCCCCCCCC-CccceeecCCeeecCCCceeeecCCcceEEEEec
Q 002835 84 VFKSGPLFISSKGIGWTSWKKRWFILT-HTSLVFFRSDPSAIPQK-GSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPD 161 (875)
Q Consensus 84 v~KEGyL~k~kKg~~~ksWkKRWfVL~-~~sL~yYKd~k~~~p~~-g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~ 161 (875)
|+++|||.++ |-..++|+.|||+|. ++.|.-|+..+....+. .+--++.++.|.+-. ...-+.+.|+|.+-
T Consensus 15 vvkEgWlhKr--GE~IknWRpRYF~l~~DG~~~Gyr~kP~~~~~~p~pLNnF~v~~cq~m~-----~erPrPntFiiRcL 87 (516)
T KOG0690|consen 15 VVKEGWLHKR--GEHIKNWRPRYFLLFNDGTLLGYRSKPKEVQPTPEPLNNFMVRDCQTMK-----TERPRPNTFIIRCL 87 (516)
T ss_pred hHHhhhHhhc--chhhhcccceEEEEeeCCceEeeccCCccCCCCcccccchhhhhhhhhh-----ccCCCCceEEEEee
Confidence 8999966654 445599999999997 66888888776442222 222335555555443 23345666766542
Q ss_pred -CCCCceeEEEecchhhHHHHHHHHHhhhc
Q 002835 162 -GRDGRAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 162 -~~dgrty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
...-..-+|.+++.+++++|+.||+.+..
T Consensus 88 QWTTVIERTF~ves~~eRq~W~~AIq~vsn 117 (516)
T KOG0690|consen 88 QWTTVIERTFYVESAEERQEWIEAIQAVSN 117 (516)
T ss_pred eeeeeeeeeeecCCHHHHHHHHHHHHHHhh
Confidence 22234678999999999999999998764
No 101
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.12 E-value=2.1e-05 Score=73.95 Aligned_cols=102 Identities=12% Similarity=0.259 Sum_probs=68.8
Q ss_pred EEeeeEeecCCCC--ccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCC-eeecCCCce----eeecCCcceEEE
Q 002835 86 KSGPLFISSKGIG--WTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGG-IDLNNSGSV----VVKADKKLLTVL 158 (875)
Q Consensus 86 KEGyL~k~kKg~~--~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~-~~l~~s~sv----~~~~~KK~~FvI 158 (875)
.||||-+.+.+.. .+.|++.|+|+.+..|+||..+.+.... .+...+.++. +.+++.... ....+-.+.|.|
T Consensus 2 lEGwlsvP~~~~~~~k~gW~r~yvVv~~~Kl~lYd~e~~~~~~-~p~~vldl~~~fhv~~V~asDVi~a~~kDiP~IF~I 80 (112)
T cd01242 2 MEGWLSLPNRTNKSRKPGWKKQYVVVSSRKILFYNDEQDKENS-TPSMILDIDKLFHVRPVTQGDVYRADAKEIPKIFQI 80 (112)
T ss_pred cceeEEccCCCCccccCCceEEEEEEeCCEEEEEecCccccCC-CcEEEEEccceeeeecccHHHeeecCcccCCeEEEE
Confidence 6899887666443 3689999999999999999977644211 1223333332 222221111 123455566887
Q ss_pred EecCCCCceeEEEecchhhHHHHHHHHHhhh
Q 002835 159 FPDGRDGRAFTLKAESLEDLYDWKTALENAL 189 (875)
Q Consensus 159 ~~~~~dgrty~fQAdSEeE~~eWI~AI~~ai 189 (875)
... ..+++.+|-|+++.|.+.|+.||...|
T Consensus 81 ~~~-~~~~~lllLA~s~~ek~kWV~~L~~~~ 110 (112)
T cd01242 81 LYA-NEARDLLLLAPQTDEQNKWVSRLVKKI 110 (112)
T ss_pred EeC-CccceEEEEeCCchHHHHHHHHHHHhc
Confidence 764 346999999999999999999998877
No 102
>KOG3640 consensus Actin binding protein Anillin [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.96 E-value=9.3e-06 Score=97.61 Aligned_cols=108 Identities=18% Similarity=0.249 Sum_probs=78.1
Q ss_pred CcEEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceee-ecCCcceEEEEe
Q 002835 82 NAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVV-KADKKLLTVLFP 160 (875)
Q Consensus 82 ~~v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~-~~~KK~~FvI~~ 160 (875)
..|...|||++-.-+.+...|.||||+|.++.+.|+|...+.+ .+++...+.|..|.-.....+.. .-.+.+.|.|.+
T Consensus 988 idVEYrGFLtmfed~sgfGaWhRyWc~L~gg~I~fWk~PdDEk-rK~Pig~IDLt~CTsq~ie~a~rdicar~ntFhie~ 1066 (1116)
T KOG3640|consen 988 IDVEYRGFLTMFEDGSGFGAWHRYWCALHGGEIKFWKYPDDEK-RKVPIGQIDLTKCTSQSIEEARRDICARPNTFHIEV 1066 (1116)
T ss_pred cceeeeeeeeeeeccCCCchhhhhhHHhcCCeeeeecCcchhc-ccCcceeeehhhhhccccccchhhhccCCceeEEEe
Confidence 3478889999877766678899999999999999999887764 56666667788777665444321 123455566651
Q ss_pred c-----CC-----CCc-eeEEEecchhhHHHHHHHHHhhhc
Q 002835 161 D-----GR-----DGR-AFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 161 ~-----~~-----dgr-ty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
- ++ .-| ...|.|++.++++.|+.+|..++.
T Consensus 1067 ~rPl~~Dqep~~ie~r~Rv~LaADTkeel~~Wls~iN~tL~ 1107 (1116)
T KOG3640|consen 1067 WRPLEDDQEPLLIEKRLRVMLAADTKEELQSWLSAINDTLK 1107 (1116)
T ss_pred ecccccccCcchhhhcceeeeecccHHHHHHHHHHHHHHHH
Confidence 0 00 111 468999999999999999998763
No 103
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.74 E-value=0.00022 Score=67.13 Aligned_cols=97 Identities=15% Similarity=0.192 Sum_probs=66.7
Q ss_pred cEEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecC
Q 002835 83 AVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDG 162 (875)
Q Consensus 83 ~v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~ 162 (875)
..+++|-|.+.-+ +..+.|||.|=.+.|+|-+-.... ......-.+.|.++.+.... +....++.|.|...
T Consensus 3 ~li~eG~L~K~~r----k~~~~R~ffLFnD~LvY~~~~~~~-~~~~~~~~i~L~~~~v~~~~---d~~~~~n~f~I~~~- 73 (104)
T cd01218 3 VLVGEGVLTKMCR----KKPKQRQFFLFNDILVYGNIVISK-KKYNKQHILPLEGVQVESIE---DDGIERNGWIIKTP- 73 (104)
T ss_pred EEEecCcEEEeec----CCCceEEEEEecCEEEEEEeecCC-ceeeEeeEEEccceEEEecC---CcccccceEEEecC-
Confidence 4789998877553 345779999999999996431111 00011123567777665431 12234677888765
Q ss_pred CCCceeEEEecchhhHHHHHHHHHhhhc
Q 002835 163 RDGRAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 163 ~dgrty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
.+.|+++|+|++|..+|+.+|..++.
T Consensus 74 --~kSf~v~A~s~~eK~eWl~~i~~ai~ 99 (104)
T cd01218 74 --TKSFAVYAATETEKREWMLHINKCVT 99 (104)
T ss_pred --CeEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999984
No 104
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=97.72 E-value=7.4e-05 Score=85.59 Aligned_cols=107 Identities=22% Similarity=0.288 Sum_probs=61.7
Q ss_pred CCcEEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccce-eecCCeeecCCCceeeecCCcceEEEE
Q 002835 81 GNAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVN-LTLGGIDLNNSGSVVVKADKKLLTVLF 159 (875)
Q Consensus 81 ~~~v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~-i~L~~~~l~~s~sv~~~~~KK~~FvI~ 159 (875)
.+...++|+||++..|. |+|||+||||+..-|||+-..+...+..-..+. +.-..+-.--...-.-+.--.++|.|.
T Consensus 314 ~~~pei~GfL~~K~dgk--KsWKk~yf~LR~SGLYys~K~tsk~~r~Lq~l~~~~~snVYt~i~~rKkyksPTd~~f~~K 391 (622)
T KOG3751|consen 314 SSPPEIQGFLYLKEDGK--KSWKKHYFVLRRSGLYYSTKGTSKEPRHLQCLADLHSSNVYTGIGGRKKYKSPTDYGFCIK 391 (622)
T ss_pred CCCccccceeeeccccc--ccceeEEEEEecCcceEccCCCCCCchhhHHHHhcccCceEEeecchhccCCCCCceEEee
Confidence 34578999999988775 899999999999999998654433222100000 000000000000000011123455555
Q ss_pred ecC-CCC-c-eeEEEecchhhHHHHHHHHHhhh
Q 002835 160 PDG-RDG-R-AFTLKAESLEDLYDWKTALENAL 189 (875)
Q Consensus 160 ~~~-~dg-r-ty~fQAdSEeE~~eWI~AI~~ai 189 (875)
+.. +.+ + .-+|||+++..+..|+.||+-+-
T Consensus 392 ~~~~~~~~r~lk~lCAEDe~t~~~WltAiRl~K 424 (622)
T KOG3751|consen 392 PNKLRNKRRFLKMLCAEDEQTRTCWLTAIRLLK 424 (622)
T ss_pred eccccCcccceeeeecccchhHHHHHHHHHHHH
Confidence 432 111 1 45899999999999999998543
No 105
>KOG0932 consensus Guanine nucleotide exchange factor EFA6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=3.7e-05 Score=88.36 Aligned_cols=102 Identities=21% Similarity=0.216 Sum_probs=67.3
Q ss_pred cEEEEeeeEee-------cC-CCCccCceeEEEEEeCCeEEEecCCCCCCCCC-Cccc--eeecCCeeecCCCceeeecC
Q 002835 83 AVFKSGPLFIS-------SK-GIGWTSWKKRWFILTHTSLVFFRSDPSAIPQK-GSEV--NLTLGGIDLNNSGSVVVKAD 151 (875)
Q Consensus 83 ~v~KEGyL~k~-------kK-g~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~-g~e~--~i~L~~~~l~~s~sv~~~~~ 151 (875)
.+.|.|+|.++ +| --+.+.||.-|.||++-.|+|-||+--..... ...+ .+.+....-.. ...+
T Consensus 505 ~~Yk~G~L~RK~had~DgkKTPrGkRgWk~fya~LkG~vLYlqkDey~p~kalse~~lknavsvHHALAt~-----AtdY 579 (774)
T KOG0932|consen 505 ATYKSGFLARKYHADMDGKKTPRGKRGWKMFYAVLKGMVLYLQKDEYKPGKALSESDLKNAVSVHHALATP-----ATDY 579 (774)
T ss_pred hhhhhhhhhhhhhccccCCcCCccchhHHHHHHHHhhheEEeeccccCcccchhhhhhhhhhhhhhhhcCC-----Cccc
Confidence 47899987652 11 12578899999999999999988764211000 0000 01111111111 1345
Q ss_pred CcceEEEEecCCCCceeEEEecchhhHHHHHHHHHhhh
Q 002835 152 KKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENAL 189 (875)
Q Consensus 152 KK~~FvI~~~~~dgrty~fQAdSEeE~~eWI~AI~~ai 189 (875)
.|..|+|.+.+.+.|+|+|||.+.++|+.||..|.-+.
T Consensus 580 ~KKp~Vf~lrtAdwrv~LFQaps~eEmqsWi~rIN~vA 617 (774)
T KOG0932|consen 580 SKKPHVFKLRTADWRVFLFQAPSQEEMQSWIERINLVA 617 (774)
T ss_pred ccCCceEEEEeccceeEEEeCCCHHHHHHHHHHHHHHH
Confidence 66667888888899999999999999999999998654
No 106
>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]
Probab=97.60 E-value=3.2e-05 Score=92.99 Aligned_cols=96 Identities=20% Similarity=0.397 Sum_probs=67.6
Q ss_pred EEEEeeeEeecCCCCccCceeEEEEEeCC--eEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEec
Q 002835 84 VFKSGPLFISSKGIGWTSWKKRWFILTHT--SLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPD 161 (875)
Q Consensus 84 v~KEGyL~k~kKg~~~ksWkKRWfVL~~~--sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~ 161 (875)
.+.+|||||+ |+..|-|+.|||||... .|.||.+-.+..|.+-..+ .....+.... ....+.|-+|++...
T Consensus 1634 r~~eG~LyKr--GA~lK~Wk~RwFVLd~~khqlrYYd~~edt~pkG~IdL-aevesv~~~~----~k~vdekgffdlktt 1706 (1732)
T KOG1090|consen 1634 RIPEGYLYKR--GAKLKLWKPRWFVLDPDKHQLRYYDDFEDTKPKGCIDL-AEVESVALIG----PKTVDEKGFFDLKTT 1706 (1732)
T ss_pred cCcccchhhc--chhhcccccceeEecCCccceeeecccccccccchhhh-hhhhhhcccC----ccccCccceeeeehh
Confidence 4569988865 45569999999999855 7999998877755442111 1111111111 112367777888876
Q ss_pred CCCCceeEEEecchhhHHHHHHHHHhhh
Q 002835 162 GRDGRAFTLKAESLEDLYDWKTALENAL 189 (875)
Q Consensus 162 ~~dgrty~fQAdSEeE~~eWI~AI~~ai 189 (875)
.|+|-|+|.+-....+|++.|+..+
T Consensus 1707 ---~rvynf~a~nin~AqqWve~iqscl 1731 (1732)
T KOG1090|consen 1707 ---NRVYNFCAQNINLAQQWVECIQSCL 1731 (1732)
T ss_pred ---hHHHHHHhccchHHHHHHHHHHHhh
Confidence 7999999999999999999998865
No 107
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=97.45 E-value=0.00028 Score=83.36 Aligned_cols=98 Identities=22% Similarity=0.316 Sum_probs=68.3
Q ss_pred EEEEeeeEeecCC--C-CccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCcee-eecCCcceEEEE
Q 002835 84 VFKSGPLFISSKG--I-GWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVV-VKADKKLLTVLF 159 (875)
Q Consensus 84 v~KEGyL~k~kKg--~-~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~-~~~~KK~~FvI~ 159 (875)
|.++|.|.+..+| . +.+++|||||.|+...|.|.|+.... +...+.+..|.-. ..+. ...+.+++|.|+
T Consensus 565 v~k~glm~kr~~gr~~~~~~~FKKryf~LT~~~Ls~~Ksp~~q-----~~~~Ipl~nI~av--Eklee~sF~~knv~qVV 637 (800)
T KOG2059|consen 565 VLKEGLMIKRAQGRGRFGKKNFKKRYFRLTTEELSYAKSPGKQ-----PIYTIPLSNIRAV--EKLEEKSFKMKNVFQVV 637 (800)
T ss_pred eecccceEeccccccchhhhhhhheEEEeccceeEEecCCccC-----cccceeHHHHHHH--HHhhhhccCCCceEEEE
Confidence 5666655554433 2 44889999999999999999987643 2234544443221 1111 123577888877
Q ss_pred ecCCCCceeEEEecchhhHHHHHHHHHhhhcc
Q 002835 160 PDGRDGRAFTLKAESLEDLYDWKTALENALAQ 191 (875)
Q Consensus 160 ~~~~dgrty~fQAdSEeE~~eWI~AI~~ai~~ 191 (875)
.. .|+.||||.+--|.++|+.+|.++...
T Consensus 638 ~~---drtly~Q~~n~vEandWldaL~kvs~~ 666 (800)
T KOG2059|consen 638 HT---DRTLYVQAKNCVEANDWLDALRKVSCC 666 (800)
T ss_pred ec---CcceeEecCCchHHHHHHHHHHHHhcc
Confidence 65 379999999999999999999998753
No 108
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=97.43 E-value=0.001 Score=62.68 Aligned_cols=87 Identities=25% Similarity=0.306 Sum_probs=53.8
Q ss_pred cEEEEeeeEeecCCCCccCceeEEEEEeCC-eEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEec
Q 002835 83 AVFKSGPLFISSKGIGWTSWKKRWFILTHT-SLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPD 161 (875)
Q Consensus 83 ~v~KEGyL~k~kKg~~~ksWkKRWfVL~~~-sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~ 161 (875)
.++++|++.++ +|. .+++|||+|+++ .|+|+...... + -+.|.+...-.+.. .....|.|..+
T Consensus 12 ~Il~~g~v~K~-kgl---~~kkR~liLTd~PrL~Yvdp~~~~---------~-KGeI~~~~~l~v~~--k~~~~F~I~tp 75 (104)
T PF14593_consen 12 LILKQGYVKKR-KGL---FAKKRQLILTDGPRLFYVDPKKMV---------L-KGEIPWSKELSVEV--KSFKTFFIHTP 75 (104)
T ss_dssp -EEEEEEEEEE-ETT---EEEEEEEEEETTTEEEEEETTTTE---------E-EEEE--STT-EEEE--CSSSEEEEEET
T ss_pred eEEEEEEEEEe-ece---EEEEEEEEEccCCEEEEEECCCCe---------E-CcEEecCCceEEEE--ccCCEEEEECC
Confidence 49999988876 343 289999999999 56665533311 1 13344443322222 22234666665
Q ss_pred CCCCceeEEEecchhhHHHHHHHHHhhh
Q 002835 162 GRDGRAFTLKAESLEDLYDWKTALENAL 189 (875)
Q Consensus 162 ~~dgrty~fQAdSEeE~~eWI~AI~~ai 189 (875)
+|+|+|.. .+.....|+.+|+.+.
T Consensus 76 ---~RtY~l~d-~~~~A~~W~~~I~~~~ 99 (104)
T PF14593_consen 76 ---KRTYYLED-PEGNAQQWVEAIEEVK 99 (104)
T ss_dssp ---TEEEEEE--TTS-HHHHHHHHHHHH
T ss_pred ---CcEEEEEC-CCCCHHHHHHHHHHHH
Confidence 89999998 5667888999999876
No 109
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.38 E-value=0.0014 Score=62.64 Aligned_cols=101 Identities=17% Similarity=0.226 Sum_probs=66.6
Q ss_pred cEEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCC-CCC--Cccce----eecCCeeecCCCceeeecCCcce
Q 002835 83 AVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAI-PQK--GSEVN----LTLGGIDLNNSGSVVVKADKKLL 155 (875)
Q Consensus 83 ~v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~-p~~--g~e~~----i~L~~~~l~~s~sv~~~~~KK~~ 155 (875)
..++||-|-+...+ .+.++.|||.|=++.|+|+|...... ..+ +..+. +.+..+.+.... +...-++.
T Consensus 3 elI~EG~L~ki~~~--~~~~q~R~~FLFd~~Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~~---d~~~~kna 77 (112)
T cd01261 3 EFIMEGTLTRVGPS--KKAKHERHVFLFDGLMVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDKP---DSSEYKNA 77 (112)
T ss_pred cccccCcEEEEecc--cCCcceEEEEEecCeEEEEEeccCcccccccccceEEEEEEEeeeeeEEEEcC---CCcccCce
Confidence 46889977654433 36789999999999999999644310 001 11111 334445444221 11223677
Q ss_pred EEEEecCCCCceeEEEecchhhHHHHHHHHHhhhc
Q 002835 156 TVLFPDGRDGRAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 156 FvI~~~~~dgrty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
|.|... +++.|.|+|.++++..+||.+|..++.
T Consensus 78 F~I~~~--~~~s~~l~Akt~eeK~~Wm~~l~~~~~ 110 (112)
T cd01261 78 FEIILK--DGNSVIFSAKNAEEKNNWMAALISVQT 110 (112)
T ss_pred EEEEcC--CCCEEEEEECCHHHHHHHHHHHHHHhc
Confidence 887753 367899999999999999999998875
No 110
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=97.23 E-value=0.0013 Score=79.11 Aligned_cols=103 Identities=17% Similarity=0.295 Sum_probs=68.7
Q ss_pred cEEEEeeeEeecC-CCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceee----ecCCcceEE
Q 002835 83 AVFKSGPLFISSK-GIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVV----KADKKLLTV 157 (875)
Q Consensus 83 ~v~KEGyL~k~kK-g~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~----~~~KK~~Fv 157 (875)
.+.+|||||.-+. +.+..--++|||||.+..|.|||.++... .+.++...+....-|.+ ..-.+-.|+
T Consensus 3 ~~~~eGW~y~~g~~kig~~~~~~Ry~vl~~~~~~~yK~~P~~~-------~~pirs~~id~~~rVed~Gr~~~~g~~~yv 75 (719)
T PLN00188 3 KVVYEGWMVRYGRRKIGRSYIHMRYFVLESRLLAYYKKKPQDN-------QVPIKTLLIDGNCRVEDRGLKTHHGHMVYV 75 (719)
T ss_pred cceEeeEEEEEcccccccccceeEEEEEecchhhhcccCCccc-------cccceeeccCCCceEeecCceEEcCceEEE
Confidence 3789999998654 44556679999999999999999865431 12233333332222211 112334455
Q ss_pred EEec--CCCCceeEEEecchhhHHHHHHHHHhhhccC
Q 002835 158 LFPD--GRDGRAFTLKAESLEDLYDWKTALENALAQA 192 (875)
Q Consensus 158 I~~~--~~dgrty~fQAdSEeE~~eWI~AI~~ai~~a 192 (875)
+.+- ....+...|.|-+.+|...|++|++.++.+.
T Consensus 76 l~~Yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~q~ 112 (719)
T PLN00188 76 LSVYNKKEKYHRITMAAFNIQEALIWKEKIESVIDQH 112 (719)
T ss_pred EEEecCCCccccEEEecCCHHHHHHHHHHHHHHHhhh
Confidence 5542 2334678999999999999999999999754
No 111
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=97.15 E-value=0.00087 Score=78.32 Aligned_cols=100 Identities=22% Similarity=0.337 Sum_probs=60.8
Q ss_pred CcEEEEeeeEeecCCCCccCceeEEEEEeCCeEEEe-cCCCCCCCCCCccce-eecCCe-eecCCCceeeecCCcceEEE
Q 002835 82 NAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFF-RSDPSAIPQKGSEVN-LTLGGI-DLNNSGSVVVKADKKLLTVL 158 (875)
Q Consensus 82 ~~v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yY-Kd~k~~~p~~g~e~~-i~L~~~-~l~~s~sv~~~~~KK~~FvI 158 (875)
+.+.+.|||++..... .|++|||.+..+.+... +..++.........+ ..+..| .+... ....+.++|.+
T Consensus 375 sDv~~~G~l~k~~~~~---~wk~ry~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~pv~~~----~~~~~~~~~~i 447 (478)
T PTZ00267 375 SDVTHGGYLYKYSSDM---RWKKRYFYIGNGQLRISLSENPENDGVAPKSVNLETVNDVFPVPEV----YSQKHPNQLVL 447 (478)
T ss_pred CCcccceEEeccCCCc---chhhheEEecCCceEEEeccccccCCCCCccccHHHhcccccccHH----hcCCCCceEEE
Confidence 3478999888765433 59999999998766553 322221111001111 111221 11100 11235677777
Q ss_pred EecCCCCceeEEEecchhhHHHHHHHHHhhhc
Q 002835 159 FPDGRDGRAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 159 ~~~~~dgrty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
. .+.|+.++|+|++++++++||.+|+.+++
T Consensus 448 ~--~~~~~~~~~~~~~~~~~~~W~~~~~~~~~ 477 (478)
T PTZ00267 448 W--FNNGQKIIAYAKTAEDRDQWISKFQRACG 477 (478)
T ss_pred E--ecCCcEEEEecCChHHHHHHHHHHHHHhC
Confidence 4 45688899999999999999999999873
No 112
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.15 E-value=0.0011 Score=63.12 Aligned_cols=80 Identities=14% Similarity=0.187 Sum_probs=50.4
Q ss_pred EEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeec-C-CCceeeecCCcceEEEEecC
Q 002835 85 FKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLN-N-SGSVVVKADKKLLTVLFPDG 162 (875)
Q Consensus 85 ~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~-~-s~sv~~~~~KK~~FvI~~~~ 162 (875)
.|||||---...- +.|||+|++|....+.+|+++....+-+. +.|..|.-- . .+.........+||+|.+.
T Consensus 1 lkEGWmVHyT~~d--~~rKRhYWrLDsK~Itlf~~e~~skyyKe----IPLsEIl~V~~~~~~~~~~~~~~hcFEi~T~- 73 (117)
T cd01239 1 LKEGWMVHYTSSD--NRRKKHYWRLDSKAITLYQEESGSRYYKE----IPLAEILSVSSNNGDSVLAKHPPHCFEIRTT- 73 (117)
T ss_pred CccceEEEEecCc--cceeeeEEEecCCeEEEEEcCCCCeeeEE----eehHHheEEeccCCCcCCCCCCCcEEEEEec-
Confidence 3799885433333 68999999999999999999876543221 222222111 0 0001112357899999875
Q ss_pred CCCceeEEEec
Q 002835 163 RDGRAFTLKAE 173 (875)
Q Consensus 163 ~dgrty~fQAd 173 (875)
..+|+++.+
T Consensus 74 --~~vY~VG~~ 82 (117)
T cd01239 74 --TNVYFVGGE 82 (117)
T ss_pred --CEEEEeccc
Confidence 688999775
No 113
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.11 E-value=0.0012 Score=62.60 Aligned_cols=99 Identities=18% Similarity=0.282 Sum_probs=63.4
Q ss_pred eeeEeecCC--CCccCceeEEEEEeCCeEEEecCCCCCC-CCCCccceeecC--CeeecCCCcee-eecCCcceEEEEec
Q 002835 88 GPLFISSKG--IGWTSWKKRWFILTHTSLVFFRSDPSAI-PQKGSEVNLTLG--GIDLNNSGSVV-VKADKKLLTVLFPD 161 (875)
Q Consensus 88 GyL~k~kKg--~~~ksWkKRWfVL~~~sL~yYKd~k~~~-p~~g~e~~i~L~--~~~l~~s~sv~-~~~~KK~~FvI~~~ 161 (875)
|||.-+-.+ ...+.|+.+|++|++..|++|+..+-.. ....+.....|. .+.+...+... ....+.+||.+.+.
T Consensus 3 GW~~E~~~~~~~~~~~wrP~F~aL~~~dl~ly~s~P~s~e~w~~p~~~y~L~~~atrvv~~~~~~~~~~~~~~~F~irtg 82 (108)
T cd01258 3 GWVNEQLSGDDESSQRWRPRFLALKGSEFLFFETPPLSVEDWSRPLYVYKLYDVATRLVKNSSTRRLNDQRDNCFLIRTG 82 (108)
T ss_pred eecccccCCCCccccccceEEEEEcCCcEEEEeCCCCCHHHHhChhhhChhHHhhhheeccCCccCcCCCCceEEEEEcC
Confidence 777655333 2468999999999999999999876421 011122223333 22222211110 02256688988865
Q ss_pred CCCCceeEEEecchhhHHHHHHHHHh
Q 002835 162 GRDGRAFTLKAESLEDLYDWKTALEN 187 (875)
Q Consensus 162 ~~dgrty~fQAdSEeE~~eWI~AI~~ 187 (875)
.. -..++|..++..|+..|..||..
T Consensus 83 ~~-vesh~fsVEt~~dL~~W~raiv~ 107 (108)
T cd01258 83 TQ-VENHYLRVETHRDLASWERALVR 107 (108)
T ss_pred Cc-eeeEEEEecCHHHHHHHHHHHhc
Confidence 33 37899999999999999999864
No 114
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=97.01 E-value=0.00016 Score=83.64 Aligned_cols=101 Identities=21% Similarity=0.404 Sum_probs=69.4
Q ss_pred cEEEEeeeEeecCCCCccCceeEEEEEeCCe-----EEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEE
Q 002835 83 AVFKSGPLFISSKGIGWTSWKKRWFILTHTS-----LVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTV 157 (875)
Q Consensus 83 ~v~KEGyL~k~kKg~~~ksWkKRWfVL~~~s-----L~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~Fv 157 (875)
..-..||||.-++.. |+.||||||||..-+ ++-|+..+.. +..-+.|.+.++.-.....--.+.+.+|.
T Consensus 463 nmkhsgylyaig~nv-wkrwkkrffvlvqvsqytfamcsyrekkae-----pqel~qldgytvdytdp~pglqgg~~ffn 536 (1218)
T KOG3543|consen 463 NMKHSGYLYAIGRNV-WKRWKKRFFVLVQVSQYTFAMCSYREKKAE-----PQELIQLDGYTVDYTDPSPGLQGGKHFFN 536 (1218)
T ss_pred ccccceeehhhhhHH-HHHhHhhEEEEEEhhhhhhHhhhhhhcccC-----hHHHhhccCeeeccCCCCCccccchHHHH
Confidence 356789999988877 999999999998764 3335544432 12235566666654433221223444454
Q ss_pred EEecCCCCceeEEEecchhhHHHHHHHHHhhhccC
Q 002835 158 LFPDGRDGRAFTLKAESLEDLYDWKTALENALAQA 192 (875)
Q Consensus 158 I~~~~~dgrty~fQAdSEeE~~eWI~AI~~ai~~a 192 (875)
-+- .|-+..|..+++.++..|++||-.+.+++
T Consensus 537 avk---egdtvifasddeqdr~lwvqamyratgqs 568 (1218)
T KOG3543|consen 537 AVK---EGDTVIFASDDEQDRHLWVQAMYRATGQS 568 (1218)
T ss_pred Hhc---cCceEEeccCchhhhhHHHHHHHHhhCCc
Confidence 332 37889999999999999999999998765
No 115
>PF15408 PH_7: Pleckstrin homology domain
Probab=96.31 E-value=0.0018 Score=58.28 Aligned_cols=93 Identities=12% Similarity=0.123 Sum_probs=60.0
Q ss_pred EeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCe----eecCCCceeeecCCcceEEEEecC
Q 002835 87 SGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGI----DLNNSGSVVVKADKKLLTVLFPDG 162 (875)
Q Consensus 87 EGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~----~l~~s~sv~~~~~KK~~FvI~~~~ 162 (875)
|||||+.+++. -+|||.||++..+.||.++.... -.++.|+.. .+.+.... ...-.-..|-|....
T Consensus 1 EGYLY~~E~~s----i~rRF~~L~~K~~~~~~~KGG~~-----L~sF~L~~s~~s~Pm~~~~~A-~~N~Gi~A~G~L~~~ 70 (104)
T PF15408_consen 1 EGYLYRDEDSS----IQRRFVMLRSKQFNMYEDKGGQY-----LCSFQLSSSVVSHPMVNFSQA-VPNLGINAFGFLMYS 70 (104)
T ss_pred CCeEEEeccch----HHHHHHhhhhceeEEecccCCce-----eeeeehhhhhhhccccccccc-CCCCCeeEEEEEEec
Confidence 69999999886 48899999999999999765321 012222221 11111000 001122345555556
Q ss_pred CCCceeEEEecchhhHHHHHHHHHhhh
Q 002835 163 RDGRAFTLKAESLEDLYDWKTALENAL 189 (875)
Q Consensus 163 ~dgrty~fQAdSEeE~~eWI~AI~~ai 189 (875)
.+++..-+-|++.+-|+.|+++|.+-.
T Consensus 71 ~~~~~~~~FA~S~~~~~~Wi~~mN~~s 97 (104)
T PF15408_consen 71 PSRRHVQCFASSKKVCQSWIQVMNSPS 97 (104)
T ss_pred CCcchhhhhhhHHHHHHHHHHHhcChh
Confidence 778888889999999999999997543
No 116
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.25 E-value=0.037 Score=51.65 Aligned_cols=92 Identities=20% Similarity=0.244 Sum_probs=60.2
Q ss_pred EEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecCC
Q 002835 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGR 163 (875)
Q Consensus 84 v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~~ 163 (875)
.+++|.|...+.+ +-|++-|=+..|.|.|..++...-+ -.+.+....+... .. ...++|.|.....
T Consensus 4 Llleg~l~~~~~~------~eR~vFLFe~~ll~~K~~~~~y~~K---~~i~~~~l~i~e~----~~-~d~~~F~v~~~~~ 69 (97)
T cd01222 4 LLLEGRFREHGGG------KPRLLFLFQTMLLIAKPRGDKYQFK---AYIPCKNLMLVEH----LP-GEPLCFRVIPFDD 69 (97)
T ss_pred eeeeceEEeecCC------CceEEEEecccEEEEEecCCeeEEE---EEEEecceEEecC----CC-CCCcEEEEEecCC
Confidence 6789977644432 3488888899999988654321000 0122333333321 11 2368898877654
Q ss_pred CCceeEEEecchhhHHHHHHHHHhhh
Q 002835 164 DGRAFTLKAESLEDLYDWKTALENAL 189 (875)
Q Consensus 164 dgrty~fQAdSEeE~~eWI~AI~~ai 189 (875)
+.+.|.|||.|.++.+.|+.+|+.++
T Consensus 70 p~~~~~l~A~s~e~K~~W~~~i~~~i 95 (97)
T cd01222 70 PKGALQLTARNREEKRIWTQQLKRAM 95 (97)
T ss_pred CceEEEEEecCHHHHHHHHHHHHHHh
Confidence 45689999999999999999999886
No 117
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=96.21 E-value=0.0061 Score=57.44 Aligned_cols=95 Identities=18% Similarity=0.278 Sum_probs=63.7
Q ss_pred EEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCee-ecCCCceeeecCCcceEEEEecC
Q 002835 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGID-LNNSGSVVVKADKKLLTVLFPDG 162 (875)
Q Consensus 84 v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~-l~~s~sv~~~~~KK~~FvI~~~~ 162 (875)
++.+||+.+.+. ++...|++|||-|-.+.|-+|-...+. ++++ +....+. +.. +. .......|-.+..+
T Consensus 3 cIvhGyi~KLGG-PFls~WQ~Ry~~LfPNRLE~~~~~~~~----~~eL-i~M~~i~~V~~-e~--~~iK~~~CI~ik~k- 72 (116)
T cd01240 3 CIVHGYIKKLGG-PFLSQWQTRYFKLYPNRLELYGESEAN----KPEL-ITMDQIEDVSV-EF--QQIKEENCILLKIR- 72 (116)
T ss_pred eEEeeehhhhCC-HHHHHHHHHHheeCcceeeeccccccc----CCcE-EEeehhhhcch-hh--eeeccCceEEEEEc-
Confidence 788998776654 356899999999999999997543332 1222 2222221 110 00 12244566777654
Q ss_pred CCCceeEEEecchhhHHHHHHHHHhhh
Q 002835 163 RDGRAFTLKAESLEDLYDWKTALENAL 189 (875)
Q Consensus 163 ~dgrty~fQAdSEeE~~eWI~AI~~ai 189 (875)
+++.|++.+.++-+..+|..-|+.+-
T Consensus 73 -~~~k~vlt~~d~i~l~qW~~elr~a~ 98 (116)
T cd01240 73 -DEKKIVLTNSDEIELKQWKKELRDAH 98 (116)
T ss_pred -CCceEEEecCCcHHHHHHHHHHHHHH
Confidence 57889999999999999999999875
No 118
>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms]
Probab=96.13 E-value=0.0027 Score=80.01 Aligned_cols=160 Identities=15% Similarity=0.237 Sum_probs=125.6
Q ss_pred ccccChhHh---hhcCCCCcHHHHH-HHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCC---CC----CCCCCchh
Q 002835 229 VIGRPILLA---LEDVDGTPSFLEK-AIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT---EF----SPEEDAHI 297 (875)
Q Consensus 229 vFGvpLe~l---l~~~~~VP~~L~k-cI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~~---~~----~~~~D~h~ 297 (875)
++|+++..+ ..-....|.++.+ |.......|....|+||..+....+...+..++.... .+ ....++..
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~vs~~~~~e~~~~g~~s~~l~r~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~ 541 (918)
T KOG1453|consen 462 ILGTDLTTLSVNKDLNSNRPLSVSRSLERESRSPGALSRGLFRVSGFSSTIESKKNAFDRKGQSKKDASPNVHKSKEVNL 541 (918)
T ss_pred ccccCccccccchhhhcccCcccccchhcccCCCCcccccccccCCccccccchhhccCccccchhccCCCccccccchh
Confidence 889988765 2224567888888 7788888999999999999998999999888887431 11 11235666
Q ss_pred hHhhHHHHHhhC--CCCCCChhhHHHHH----------------HHHhcCc-hHHH-------HHHHHHHHh----hCCh
Q 002835 298 IADCVKYVIREL--PSSPVPASCCNALL----------------EARRTDR-GSRV-------SAMRTAILE----TFPE 347 (875)
Q Consensus 298 VAslLK~fLReL--PePLlp~~ly~~~i----------------~a~~~~~-~eri-------~~i~~LI~~----~LP~ 347 (875)
+.+.++.|+|.+ |.+......|..|+ ....... .+++ ..+..+. . .+|.
T Consensus 542 ~sg~~~~~~r~~~~P~~c~~c~~~~~~~~~~c~~c~~~chkkc~~~~~~~~~~~~l~~~~~fG~~l~~~~-~~e~~~vP~ 620 (918)
T KOG1453|consen 542 HSGALKHYLRSLRKPAPCRTCETYSWFMELECELCRLVCHKKCLEALKSLCGHERLPGRPLFGVSLSELA-RYEPSTVPF 620 (918)
T ss_pred ccCcchhhhhcccCCcccccccccchhhhcccceeeeeccccchhhccccCccccccccccccHHHHHhh-ccCCCCCCH
Confidence 777999999999 99988888888888 4433444 5555 5666643 4 7999
Q ss_pred hHHHHHHHHHHHHHHHHHhhccc-CCCc-cccceeecc----cccCCC
Q 002835 348 PNRKLLQRILMMMQTVASSKNQN-RMST-SAVAACMAP----LLLRPL 389 (875)
Q Consensus 348 ~Nr~lL~~Ll~~L~~Va~~S~~N-kMta-~NLAi~FgP----tLLrp~ 389 (875)
....+|.++..|+.+|.....+| -|+. .||..+|++ +++..+
T Consensus 621 i~~~c~~~ie~~~lr~eGiYRksG~~~~~e~l~~~~e~~~~~v~l~~~ 668 (918)
T KOG1453|consen 621 ILKKCLREIEAHLLRVEGIYRKSGSMNQVENLSAVFENGDALVLLSTP 668 (918)
T ss_pred HHHHHHHHHHHhhhhccceeeccccHHHHHHHHHHhcCCccceecCCC
Confidence 99999999999999999999999 7888 999999999 555544
No 119
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=95.67 E-value=0.00024 Score=90.21 Aligned_cols=102 Identities=19% Similarity=0.208 Sum_probs=71.8
Q ss_pred EEEEeeeEee------cCCCCccCceeEEEEEeCCeEEEecCCCCCCC----CCCccceeecCCeeecCCCceeeecCCc
Q 002835 84 VFKSGPLFIS------SKGIGWTSWKKRWFILTHTSLVFFRSDPSAIP----QKGSEVNLTLGGIDLNNSGSVVVKADKK 153 (875)
Q Consensus 84 v~KEGyL~k~------kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p----~~g~e~~i~L~~~~l~~s~sv~~~~~KK 153 (875)
..++|+||++ .+..+.++|.+.||++..+.+.||||.+.... ...++..+.+..+.+.-. ++..+|+
T Consensus 2299 ~~~eG~L~Rk~~~~A~e~k~~nRsw~~vy~~i~e~el~fykD~k~~~a~ve~~~r~e~~lel~~a~i~~a---~dy~kkk 2375 (2473)
T KOG0517|consen 2299 RQLEGFLYRKHLLGALEIKASNRSWDNVYCRIREKELGFYKDAKKDLASVELLVRGEPPLELDMAAIEVA---SDYHKKK 2375 (2473)
T ss_pred HHHHhHHHHHHHHhhhhhhhhcccHHHHHHHHHhccchhhcccCcccccchhhccCCcchhcchhHHHHH---HHHHHHh
Confidence 5789999863 34557899999999999999999999875432 122333343443333211 2334455
Q ss_pred ceEEEEecCCCCceeEEEecchhhHHHHHHHHHhhhc
Q 002835 154 LLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 154 ~~FvI~~~~~dgrty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
+.|. +...+|..|.|+|.++++|+.|+.++..+..
T Consensus 2376 ~v~~--l~~~~gae~llq~k~ee~m~sWL~~~a~~~~ 2410 (2473)
T KOG0517|consen 2376 HVFL--LQLPPGAEHLLQAKDEEEMESWLRALAVKRA 2410 (2473)
T ss_pred Hhhh--hcCCchHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 5444 4467899999999999999999999987764
No 120
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=95.57 E-value=0.13 Score=49.83 Aligned_cols=100 Identities=17% Similarity=0.197 Sum_probs=54.8
Q ss_pred eeeEeecCCC---CccCceeEEEEEeCC--eEEEecCCCCCCCC-CCccceeecCCeeecCCCceeee----cCCcceEE
Q 002835 88 GPLFISSKGI---GWTSWKKRWFILTHT--SLVFFRSDPSAIPQ-KGSEVNLTLGGIDLNNSGSVVVK----ADKKLLTV 157 (875)
Q Consensus 88 GyL~k~kKg~---~~ksWkKRWfVL~~~--sL~yYKd~k~~~p~-~g~e~~i~L~~~~l~~s~sv~~~----~~KK~~Fv 157 (875)
.||||-.++. .....++|||-|... +|+++...+..... ....-.+.+..+.....+..... .+..++|.
T Consensus 13 ~~l~Ky~r~~~~~~~~~~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~~~~~~~~~~~~~~si~ 92 (123)
T PF12814_consen 13 EWLYKYTRKGRSGISEKPHRRYFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVTEVKDGNPSPPGLKKPDHNKSII 92 (123)
T ss_pred cEEEEEcccccCccCCCcEEEEEEEeCCCCEEEecCCCCCccccccccccceEEeeeEEecCCCCCCccccccccceEEE
Confidence 4788744433 346889999999976 55665543321110 00111122222222111111000 01233444
Q ss_pred EEecCCCCceeEEEecchhhHHHHHHHHHhhhc
Q 002835 158 LFPDGRDGRAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 158 I~~~~~dgrty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
|.. .+|++-|.|++.++.+-|+.+|+..+.
T Consensus 93 i~t---~~R~L~l~a~s~~~~~~W~~aL~~L~~ 122 (123)
T PF12814_consen 93 IVT---PDRSLDLTAPSRERHEIWFNALRYLLQ 122 (123)
T ss_pred EEc---CCeEEEEEeCCHHHHHHHHHHHHHHhh
Confidence 443 379999999999999999999987763
No 121
>KOG3531 consensus Rho guanine nucleotide exchange factor CDEP [Signal transduction mechanisms]
Probab=95.54 E-value=0.007 Score=73.03 Aligned_cols=95 Identities=23% Similarity=0.373 Sum_probs=64.9
Q ss_pred EEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecCCC
Q 002835 85 FKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRD 164 (875)
Q Consensus 85 ~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~~d 164 (875)
...|||+..=|.. ..|+|.|+|.+.-+|+|||+-.+..+.. .+.|-++.+..-.. .+..-|-+.|.+..+
T Consensus 925 qLsg~Llrkfkns--sgwqkLwvvft~fcl~fyKS~qD~~~la----slPlLgysvs~P~~-~d~i~K~~vfkl~fk--- 994 (1036)
T KOG3531|consen 925 QLSGYLLRKFKNS--SGWQKLWVVFTNFCLFFYKSHQDSEPLA----SLPLLGYSVSIPAE-PDPIQKDYVFKLKFK--- 994 (1036)
T ss_pred hhhHHHHHHhhcc--ccceeeeeeecceeeEeecccccccccc----cccccccccCCCCC-CCCcchhheeeeehh---
Confidence 4567776543333 4799999999999999999877653321 12233333322111 123457777777665
Q ss_pred CceeEEEecchhhHHHHHHHHHhhh
Q 002835 165 GRAFTLKAESLEDLYDWKTALENAL 189 (875)
Q Consensus 165 grty~fQAdSEeE~~eWI~AI~~ai 189 (875)
..+|+|.|++.-..+.|++.|+.+.
T Consensus 995 ~hvyffraes~yt~~rw~evi~~a~ 1019 (1036)
T KOG3531|consen 995 SHVYFFRAESYYTFERWMEVITDAP 1019 (1036)
T ss_pred hhHHHHhhhhhhhhhhHHHHhhcCC
Confidence 5789999999999999999999876
No 122
>PLN02866 phospholipase D
Probab=95.50 E-value=0.066 Score=67.31 Aligned_cols=103 Identities=18% Similarity=0.300 Sum_probs=63.4
Q ss_pred EEEEeeeEeec-----C-CC------------CccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeec-CCeeecCCC
Q 002835 84 VFKSGPLFISS-----K-GI------------GWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTL-GGIDLNNSG 144 (875)
Q Consensus 84 v~KEGyL~k~k-----K-g~------------~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L-~~~~l~~s~ 144 (875)
-.+|||+.++. + +. -...|.||||||+.+.|.|.++..+..+.- -+.++. -........
T Consensus 182 K~~Eg~v~~r~~~~~~g~~~~~~~~~~~~~~~~~~~w~k~w~v~k~~~l~~~~~p~~~~~~~--v~lfD~~~~~~~~~~~ 259 (1068)
T PLN02866 182 KLKEGYVMVKHLPKIPKSDDSRGCFPCCCFSCCNDNWQKVWAVLKPGFLALLEDPFDAKPLD--IIVFDVLPASNGNGEG 259 (1068)
T ss_pred CcceeEEEEeccCCCCCCCccCCccccccCCeecCchheeEEEEeccEEEEEecCCCCceeE--EEEEecccccccCCCc
Confidence 46899888761 1 11 124699999999999999997766543210 011110 000000011
Q ss_pred cee------eecCCcceEEEEecCCCCceeEEEecchhhHHHHHHHHHhhhcc
Q 002835 145 SVV------VKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQ 191 (875)
Q Consensus 145 sv~------~~~~KK~~FvI~~~~~dgrty~fQAdSEeE~~eWI~AI~~ai~~ 191 (875)
.+. ....-++.|.|... .|.+.|.|.+...+..|+.+|..+...
T Consensus 260 ~~~~~~~~k~~~~~~~~~~i~~~---~r~l~l~~~s~~~~~~w~~ai~~~~~~ 309 (1068)
T PLN02866 260 QISLAKEIKERNPLRFGFKVTCG---NRSIRLRTKSSAKVKDWVAAINDAGLR 309 (1068)
T ss_pred ceeecccccccCCCcceEEEecC---ceEEEEEECCHHHHHHHHHHHHHHHhc
Confidence 110 11123556666654 788999999999999999999998743
No 123
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.32 E-value=0.17 Score=48.25 Aligned_cols=100 Identities=14% Similarity=0.174 Sum_probs=59.2
Q ss_pred EEEEeeeEeecCCCCccCc-eeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeee---cCCcceEEEE
Q 002835 84 VFKSGPLFISSKGIGWTSW-KKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVK---ADKKLLTVLF 159 (875)
Q Consensus 84 v~KEGyL~k~kKg~~~ksW-kKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~---~~KK~~FvI~ 159 (875)
.+++|-|.+.... +.| +.|+|.|=++.|+|+|.+.-......=-..+.+..|.+.....-... ..-++.|.|.
T Consensus 2 li~~Gel~~~s~~---~g~~q~R~~FLFD~~LI~CKkd~~r~~~~~yKgri~l~~~~I~d~~Dg~~~~~~~~~knafkl~ 78 (109)
T cd01224 2 LFLQGEATRQKQN---KGWNSSRVLFLFDHQMVLCKKDLIRRDHLYYKGRIDLDRCEVVNIRDGKMFSSGHTIKNSLKIY 78 (109)
T ss_pred ceEeeeEEEEecc---cCCcccEEEEEecceEEEEecccccCCcEEEEEEEEcccEEEEECCCCccccCCceeEEEEEEE
Confidence 4678866655432 223 46899999999999995431111000001244555555543110000 0125567777
Q ss_pred ecCCCCceeEEEecchhhHHHHHHHHHh
Q 002835 160 PDGRDGRAFTLKAESLEDLYDWKTALEN 187 (875)
Q Consensus 160 ~~~~dgrty~fQAdSEeE~~eWI~AI~~ 187 (875)
.... +..|.|+|.|.++...||+|+..
T Consensus 79 ~~~~-~~~~~f~~Kt~e~K~~Wm~a~~~ 105 (109)
T cd01224 79 SEST-DEWYLFSFKSAERKHRWLSAFAL 105 (109)
T ss_pred EcCC-CeEEEEEECCHHHHHHHHHHHHH
Confidence 6532 46799999999999999999864
No 124
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=95.23 E-value=0.045 Score=64.66 Aligned_cols=37 Identities=16% Similarity=0.265 Sum_probs=30.8
Q ss_pred CcceEEEEecCCCCceeEEEecchhhHHHHHHHHHhhhc
Q 002835 152 KKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 152 KK~~FvI~~~~~dgrty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
.++.|.+. .+.|+.|.|||.+++++..||.+|+.+++
T Consensus 454 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (496)
T PTZ00283 454 AAHVFAVA--FKTGRRLLFQARSDPERDAWMQKIQSVLG 490 (496)
T ss_pred CCcEEEEE--ecCCcEEEEecCCchhHHHHHHHHHHhcC
Confidence 45555544 56799999999999999999999999884
No 125
>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]
Probab=95.08 E-value=0.012 Score=69.58 Aligned_cols=94 Identities=19% Similarity=0.275 Sum_probs=60.4
Q ss_pred EEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecCC
Q 002835 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGR 163 (875)
Q Consensus 84 v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~~ 163 (875)
..+.||+-....+ .+.|+|||||++.+.+.||+...+........+.+.- +|.+. ...--..|.++..
T Consensus 249 ~ekSgy~~~~~s~--~k~lkrr~~v~k~gqi~~y~~~~~~~~~p~s~~d~~s-~~~~~-------~~~~s~~fqli~~-- 316 (936)
T KOG0248|consen 249 MEKSGYWTQLTSR--IKSLKRRYVVFKNGQISFYRKHNNRDEEPASKIDIRS-VTKLE-------QQGAAYAFQLITS-- 316 (936)
T ss_pred hhcccchhcchHH--HHHHHhHheeeccceEEEEEcCCCccccccCcccccc-cceee-------ccchhHHhhhhhh--
Confidence 6788976655533 4899999999999999999987654321111111111 11111 1122333444433
Q ss_pred CCceeEEEecchhhHHHHHHHHHhhhc
Q 002835 164 DGRAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 164 dgrty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
..+|+|-++++--..+|+..|..+|.
T Consensus 317 -t~~~~~~~~s~~lt~dw~~iL~~~iK 342 (936)
T KOG0248|consen 317 -TDKMNFMTESERTTHDWVTILSAAIK 342 (936)
T ss_pred -ceeEEEeccChhhhhhhHHHHHHHHH
Confidence 46799999999999999999988774
No 126
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=94.98 E-value=0.015 Score=67.78 Aligned_cols=94 Identities=23% Similarity=0.363 Sum_probs=59.8
Q ss_pred EEEEeeeEeecCC---CCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCcee-e--ec---CCcc
Q 002835 84 VFKSGPLFISSKG---IGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVV-V--KA---DKKL 154 (875)
Q Consensus 84 v~KEGyL~k~kKg---~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~-~--~~---~KK~ 154 (875)
-..|| -+++|+ .+.+.|+-|||+|.+..|.|.|........ ...+++.. ..+|. + +. .-+.
T Consensus 735 p~iEG--QLKEKKGrWRf~kRW~TrYFTLSgA~L~~~kg~s~~dS~---~~~IDl~~-----IRSVk~v~~kr~~rslpK 804 (851)
T KOG3723|consen 735 PLIEG--QLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKDDSD---DCPIDLSK-----IRSVKAVAKKRRDRSLPK 804 (851)
T ss_pred chhcc--hhhhhccchhhhhhhccceEEecchhhhcccCCCCCCCC---CCCccHHH-----hhhHHHHHhhhhhcccch
Confidence 35677 333333 356889999999999999997754422110 01233333 22221 1 11 1123
Q ss_pred eEEEEecCCCCceeEEEecchhhHHHHHHHHHhhhc
Q 002835 155 LTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 155 ~FvI~~~~~dgrty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
.|+|+.. ..+|.|.|.++...++|+.-|.=+++
T Consensus 805 AFEIFTA---D~T~ILKaKDeKNAEEWlqCL~IavA 837 (851)
T KOG3723|consen 805 AFEIFTA---DKTYILKAKDEKNAEEWLQCLNIAVA 837 (851)
T ss_pred hhheeec---CceEEeecccccCHHHHHHHHHHHHH
Confidence 4777754 46799999999999999999987774
No 127
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=94.79 E-value=0.0095 Score=69.50 Aligned_cols=35 Identities=14% Similarity=0.371 Sum_probs=30.2
Q ss_pred ceEEEEecCCCCceeEEEecchhhHHHHHHHHHhhhc
Q 002835 154 LLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 154 ~~FvI~~~~~dgrty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
+||.|+.. .|.++.|.|.+-+|+..|++||+..|-
T Consensus 446 e~F~IVs~--tgqtWhFeAtt~EERdaWvQai~sqIl 480 (749)
T KOG0705|consen 446 ECFEIVSN--TGQTWHFEATTYEERDAWVQAIQSQIL 480 (749)
T ss_pred ceEEEecc--ccchhhhhhcchhhHHHHHHHHHHHHH
Confidence 48888754 478999999999999999999998773
No 128
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.36 E-value=0.38 Score=46.98 Aligned_cols=97 Identities=15% Similarity=0.107 Sum_probs=56.1
Q ss_pred EEEEeeeEeecCCC------CccCceeEEEEEeCCeEEEecCCCCCCCCCCcccee----ecCCeeecCCCcee------
Q 002835 84 VFKSGPLFISSKGI------GWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNL----TLGGIDLNNSGSVV------ 147 (875)
Q Consensus 84 v~KEGyL~k~kKg~------~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i----~L~~~~l~~s~sv~------ 147 (875)
.+|.|.|.....+. ...+-+.+|+.|-.+.|.|.|...+. .+.+ ....+.+.......
T Consensus 3 LvK~GEL~~l~~~~~~~~~~~k~~~~~vylfLFnDlLl~tkkK~~~------~f~V~dy~~r~~l~V~~~e~~~~~~~~~ 76 (125)
T cd01221 3 LVKRGELTQLEERGSSNILRKKLKARTIYLFLFNDLLLITKKKLGS------TFVVFDYAPRSFLRVEKIEPDNQKIPLG 76 (125)
T ss_pred eEEEeeEEEEeccCCcchhcccccCCcEEEEEecceEEEEEecCCC------eEEEEeeccccceEEeeccccccccccc
Confidence 46888776543221 12234678999999999999855322 1222 11222222111000
Q ss_pred -eecCCcceEEEEec-CCCC--ceeEEEecchhhHHHHHHHHH
Q 002835 148 -VKADKKLLTVLFPD-GRDG--RAFTLKAESLEDLYDWKTALE 186 (875)
Q Consensus 148 -~~~~KK~~FvI~~~-~~dg--rty~fQAdSEeE~~eWI~AI~ 186 (875)
.....++.|.++.- ...| +++.|+|+|+.|+..||+||.
T Consensus 77 ~~~~~~~~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al~ 119 (125)
T cd01221 77 SNLVGRPNLFLLTLLRNADDKQAELLLSADSQSDRERWLSALA 119 (125)
T ss_pred ccccCCCceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhcC
Confidence 00134667777643 2234 469999999999999999984
No 129
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.17 E-value=0.65 Score=44.66 Aligned_cols=102 Identities=14% Similarity=0.161 Sum_probs=60.2
Q ss_pred EEEEeeeEeecCCC-CccCceeEEEEEeCCeEEEecCCCCCCCCCCccce----eecCCeeecCCCceeeecCCcceEEE
Q 002835 84 VFKSGPLFISSKGI-GWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVN----LTLGGIDLNNSGSVVVKADKKLLTVL 158 (875)
Q Consensus 84 v~KEGyL~k~kKg~-~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~----i~L~~~~l~~s~sv~~~~~KK~~FvI 158 (875)
.+++|.+.+..... ..+.=+.|.+-|=...|+|.|-......-+.+.+. +.+..+.+... ..+..++|.|
T Consensus 5 Ll~Q~~f~v~~~~~~~~~K~~eR~vFLFe~~lvfsk~~~~~~~~~~~~Y~yK~~ikls~l~l~e~-----v~gd~~kF~i 79 (114)
T cd01232 5 LLLQDTFQVWDPKAGLIQKGRERRVFLFEQSIIFAKEVKKKKQFGNPKYIYKSKLQVSKMGLTEH-----VEGDPCRFAL 79 (114)
T ss_pred eEEEccEEEEeCCccccCCCceeEEEEeeceEEEEEEeccCCCCCceeEEEecceeeeeeEeEEc-----cCCCCceEEE
Confidence 56677655543322 12223556666778888888864332110111111 22333333221 1234566888
Q ss_pred EecCCC--CceeEEEecchhhHHHHHHHHHhhhc
Q 002835 159 FPDGRD--GRAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 159 ~~~~~d--grty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
....+. ..+|.+||.|.+....|+..|+.++.
T Consensus 80 ~~~~~~~~~~~~ilqA~s~e~K~~W~~~I~~il~ 113 (114)
T cd01232 80 WSGDPPISDNRIILKANSQETKQEWVKKIREILQ 113 (114)
T ss_pred EeCCCCCCceEEEEECCCHHHHHHHHHHHHHHhh
Confidence 876553 46899999999999999999998763
No 130
>PF15404 PH_4: Pleckstrin homology domain
Probab=94.14 E-value=0.28 Score=50.89 Aligned_cols=32 Identities=25% Similarity=0.452 Sum_probs=27.8
Q ss_pred EEeeeEeecCCCCccCceeEEEEEeCCeEEEecC
Q 002835 86 KSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRS 119 (875)
Q Consensus 86 KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd 119 (875)
|.|+||.+.+++ ..|+++|+||..+.|+.|+.
T Consensus 1 ~sG~LY~K~~kh--s~F~~~~vvL~~G~Li~f~~ 32 (185)
T PF15404_consen 1 MSGYLYQKPRKH--STFKKYFVVLIPGFLILFQL 32 (185)
T ss_pred CCceeeecCCCC--CCceEEEEEEeCCEEEEEEE
Confidence 579999877766 68999999999999998876
No 131
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=93.79 E-value=0.11 Score=63.45 Aligned_cols=102 Identities=16% Similarity=0.232 Sum_probs=63.7
Q ss_pred EEEEeeeEeecCC--------CCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcce
Q 002835 84 VFKSGPLFISSKG--------IGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLL 155 (875)
Q Consensus 84 v~KEGyL~k~kKg--------~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~ 155 (875)
+...|+||..-.. ....--.++||||-++.|.||.+++...|-+- +.+.-..|...... .....-.+.
T Consensus 492 ~~~~~fLyc~~sa~~kl~~drr~~Ee~nr~wcVlg~g~ls~fen~~S~tP~~l--I~~~Eivclav~~p--d~~pn~~~~ 567 (1186)
T KOG1117|consen 492 TFLCGFLYCAPSAASKLSSDRRLREETNRKWCVLGGGFLSYFENEKSTTPNGL--ININEIVCLAVHPP--DTYPNTGFI 567 (1186)
T ss_pred ccccceeeechhhccCCCChhhhcccCCCceEEcCcchhhhhhhcCCCCCCce--eeccceEEEeecCC--CCCCCcCce
Confidence 4555999973221 12445789999999999999999886644321 11111111111100 011122444
Q ss_pred EEEEecCCCCceeEEEecchhhHHHHHHHHHhhh
Q 002835 156 TVLFPDGRDGRAFTLKAESLEDLYDWKTALENAL 189 (875)
Q Consensus 156 FvI~~~~~dgrty~fQAdSEeE~~eWI~AI~~ai 189 (875)
|.+..-...+|.|+|-+++.++...|..+|.+.-
T Consensus 568 f~fE~~l~~er~~~fgle~ad~l~~wt~aiaKhf 601 (1186)
T KOG1117|consen 568 FIFEIYLPGERVFLFGLETADALRKWTEAIAKHF 601 (1186)
T ss_pred eEEEEeecccceEEeecccHHHHHHHHHHHHHhc
Confidence 5544445568999999999999999999998765
No 132
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=93.78 E-value=0.072 Score=61.35 Aligned_cols=93 Identities=18% Similarity=0.293 Sum_probs=65.3
Q ss_pred cEEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecC
Q 002835 83 AVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDG 162 (875)
Q Consensus 83 ~v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~ 162 (875)
.+...|+|-+..... ..|+-||++|..+.|.||++..+.. .|.--.+.|....+... ...-+.|.|...
T Consensus 23 w~e~~G~lskwtnyi--~gwqdRyv~lk~g~Lsyykse~E~~--hGcRgsi~l~ka~i~ah------EfDe~rfdIsvn- 91 (611)
T KOG1739|consen 23 WVERCGVLSKWTNYI--HGWQDRYVVLKNGALSYYKSEDETE--HGCRGSICLSKAVITAH------EFDECRFDISVN- 91 (611)
T ss_pred chhhcceeeeeeccc--ccccceEEEEcccchhhhhhhhhhh--cccceeeEeccCCcccc------cchhheeeeEec-
Confidence 366788877766665 6899999999999999999876542 23333455555554432 122334666654
Q ss_pred CCCceeEEEecchhhHHHHHHHHHhh
Q 002835 163 RDGRAFTLKAESLEDLYDWKTALENA 188 (875)
Q Consensus 163 ~dgrty~fQAdSEeE~~eWI~AI~~a 188 (875)
-...++.|.+...++.|+.+|.-.
T Consensus 92 --~nv~~lra~~~~hr~~w~d~L~wm 115 (611)
T KOG1739|consen 92 --DNVWYLRAQDPDHRQQWIDALEWM 115 (611)
T ss_pred --cceeeehhcCcHHHHHHHHHHHHH
Confidence 467889999999999999998753
No 133
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=93.29 E-value=0.56 Score=43.18 Aligned_cols=86 Identities=19% Similarity=0.308 Sum_probs=49.5
Q ss_pred EEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecCCC
Q 002835 85 FKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRD 164 (875)
Q Consensus 85 ~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~~d 164 (875)
.+.|.++++++ . .|++|=++|++.--.||=|..... .+ +.|.+... .+.........|.|..+
T Consensus 2 l~~g~v~Kr~g-l---f~kkR~LiLTd~PrL~yvdp~~~~-~K--------geIp~s~~-~l~v~~~~~~~F~I~Tp--- 64 (89)
T cd01262 2 LKIGAVKKRKG-L---FAKKRQLILTNGPRLIYVDPVKKV-VK--------GEIPWSDV-ELRVEVKNSSHFFVHTP--- 64 (89)
T ss_pred ceeeeeeehhc-c---ccceeeEEEecCceEEEEcCCcCe-EE--------eEeccccc-ceEEEEecCccEEEECC---
Confidence 56785554332 2 679999999998655555544221 11 12222220 01111112233555544
Q ss_pred CceeEEEecchhhHHHHHHHHHhh
Q 002835 165 GRAFTLKAESLEDLYDWKTALENA 188 (875)
Q Consensus 165 grty~fQAdSEeE~~eWI~AI~~a 188 (875)
+|+|+|. +-+.....|+.+|..+
T Consensus 65 ~rty~le-D~~~~a~~W~~~I~~~ 87 (89)
T cd01262 65 NKVYSFE-DPKGRASQWKKAIEDL 87 (89)
T ss_pred CceEEEE-CCCCCHHHHHHHHHHH
Confidence 8999995 5568999999999865
No 134
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=93.11 E-value=0.46 Score=45.79 Aligned_cols=83 Identities=19% Similarity=0.238 Sum_probs=50.7
Q ss_pred eeEEEEEeCCeEEEecCCCCCCCCCCccce----eecCCeeecCCCceeeec--CCcc--eEEEEecCCCC-ceeEEEec
Q 002835 103 KKRWFILTHTSLVFFRSDPSAIPQKGSEVN----LTLGGIDLNNSGSVVVKA--DKKL--LTVLFPDGRDG-RAFTLKAE 173 (875)
Q Consensus 103 kKRWfVL~~~sL~yYKd~k~~~p~~g~e~~----i~L~~~~l~~s~sv~~~~--~KK~--~FvI~~~~~dg-rty~fQAd 173 (875)
+.||.-|-+.-++++|...+.. +.+++. +.+..+.|....+ .+.. .+++ .|.+.. .+| ..|+|+|.
T Consensus 21 k~RyiFLFDk~lI~CK~~~~~~--~~~~Y~~Ke~~~l~~~~I~~~~~-~d~~~~~~~~~~~f~L~~--~~~~~~~~f~~K 95 (116)
T cd01223 21 KLRYIFLFDKAVIVCKALGDNT--GDMQYTYKDIHDLADYKIENNPS-RDTEGRDTRWKYGFYLAH--KQGKTGFTFYFK 95 (116)
T ss_pred ceeEEEEecceEEEEEecCCCC--CCccEEhHHhhhhheeeeEecCc-cCcccCCcceEEEEEEEe--cCCCccEEEEeC
Confidence 5788888899999999654321 122222 2233333332111 0111 2334 455544 343 67999999
Q ss_pred chhhHHHHHHHHHhhhc
Q 002835 174 SLEDLYDWKTALENALA 190 (875)
Q Consensus 174 SEeE~~eWI~AI~~ai~ 190 (875)
|+++.+.||.||..|+.
T Consensus 96 tee~K~kWm~al~~a~s 112 (116)
T cd01223 96 TEHLRKKWLKALEMAMS 112 (116)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999999884
No 135
>KOG1449 consensus Predicted Rho GTPase-activating protein CdGAPr [Signal transduction mechanisms]
Probab=92.78 E-value=0.02 Score=66.97 Aligned_cols=73 Identities=22% Similarity=0.210 Sum_probs=51.6
Q ss_pred HHHHHHHHHhhcccCCCccccceeecccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 002835 357 LMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFG 436 (875)
Q Consensus 357 l~~L~~Va~~S~~NkMta~NLAi~FgPtLLrp~~s~~~e~e~d~~~~g~~~~qL~~a~~~~~~~~~IVe~LIeny~~IF~ 436 (875)
++||..|+.+.....|.+.|||+||+|+|+|.++....-.+. .-|+ +|........-++++++.|-+.||.
T Consensus 1 ~rHls~va~~~s~tnmhA~Nla~vwapnllrskeies~lcs~---~~Gd------aAf~avq~qsvV~EfilnhvDvlF~ 71 (670)
T KOG1449|consen 1 HRHLSSVALGPSRTNMHAINLAEVWAPNLLRSKEIESSLCSH---LWGD------AAFSAVQAQSVVSEFILNHVDVLFL 71 (670)
T ss_pred CcchhhhhccchhhHHHHhhHHHhhhhhhHHHHHHHHhhhcc---cccc------HHHHHHHhhhhhhhhcccccceecC
Confidence 368999999999999999999999999999987521111110 0022 2344444445568899999999998
Q ss_pred CC
Q 002835 437 EG 438 (875)
Q Consensus 437 e~ 438 (875)
..
T Consensus 72 ~~ 73 (670)
T KOG1449|consen 72 PT 73 (670)
T ss_pred Cc
Confidence 43
No 136
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.53 E-value=0.52 Score=54.28 Aligned_cols=108 Identities=20% Similarity=0.330 Sum_probs=77.8
Q ss_pred hhhhcchHHHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCC
Q 002835 651 QRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTI 730 (875)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~~~~~~ 730 (875)
..||+.|..+..+|. ||+.=+..|..+|.+|+....+-.+|-.-|+++++||+.|+++...|-..+.--.+.+
T Consensus 347 sqlen~k~~~e~~~~-e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl------ 419 (493)
T KOG0804|consen 347 SQLENQKQYYELLIT-EADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKL------ 419 (493)
T ss_pred HHHHhHHHHHHHHHH-HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH------
Confidence 467888888877774 6777788899999999999988889999999999999999999999988775544433
Q ss_pred ChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 002835 731 DEKTKVELGEIAQAETDIINLKQKAKDLRVQLSEQ 765 (875)
Q Consensus 731 ~~~~~~~l~~i~~~e~~v~~l~~~~~~l~~~l~~~ 765 (875)
-.....+=+.+...+.-|..|+.++-+|-+.|..|
T Consensus 420 ~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le~q 454 (493)
T KOG0804|consen 420 KELEEREKEALGSKDEKITDLQEQLRDLMFFLEAQ 454 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHheehhhh
Confidence 11112222334455556666666666666665443
No 137
>KOG1449 consensus Predicted Rho GTPase-activating protein CdGAPr [Signal transduction mechanisms]
Probab=92.47 E-value=0.042 Score=64.42 Aligned_cols=140 Identities=18% Similarity=0.143 Sum_probs=94.7
Q ss_pred CCccccChhHhhh-cCCCCcH-HHHHHHHHHHH---hC--CccCCeeecCCCHHHHHHHHHHHhcCCCCCCCCCCchhhH
Q 002835 227 FPVIGRPILLALE-DVDGTPS-FLEKAIRFIEE---HG--VQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHIIA 299 (875)
Q Consensus 227 ~~vFGvpLe~ll~-~~~~VP~-~L~kcI~~Le~---~G--l~~EGIFR~sG~~~~V~~Lk~~ld~g~~~~~~~~D~h~VA 299 (875)
...||.-|..+.- -++.||. .+.+||..+.. ++ +...|.|+++.+.... .+...+....|+.++.
T Consensus 207 ~~~~gl~ltr~~~~~G~~lpas~~g~~C~s~~~~~q~~ei~~~~g~l~a~~D~gae--------~d~~af~~p~di~v~S 278 (670)
T KOG1449|consen 207 NLNCGLVLTRMEVGLGRGLPASEWGRGCVSHHAVTQHREILDGNGVLSAVEDEGAE--------VDGEAFRWPSDIVVES 278 (670)
T ss_pred CccccceecceeeccccccchhhhccchhccccchhccCCcccCcceecccccccc--------ccccccCCccceeeec
Confidence 4445554443222 2567787 77777766655 22 4455777776542211 1112344456899999
Q ss_pred hhHHHHHhhCCCCCCChhhHHHHHHHHhcCc--hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCcccc
Q 002835 300 DCVKYVIRELPSSPVPASCCNALLEARRTDR--GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAV 377 (875)
Q Consensus 300 slLK~fLReLPePLlp~~ly~~~i~a~~~~~--~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NL 377 (875)
.+++-|+|.+|.|+.. .++..+| .+.+..++-.+ ...++.|+.+-.+|..||...+.-. .++
T Consensus 279 ~d~dp~s~Q~~pp~~~--------~~~~k~Ds~s~sv~~~~~~~-~~~se~~~r~a~~lse~ft~~~~~~-------~s~ 342 (670)
T KOG1449|consen 279 WDMDPYSRQLPPPYPK--------EAFEKEDSLSESVESLRFSL-ETMSEAHYRTAKFLSEHFTRLCKSK-------KSL 342 (670)
T ss_pred cccChhhhhcCCCCcc--------cccccccCcccceeeecccc-ccCCcccchHhhhhchhhhhhcccc-------ccc
Confidence 9999999999999444 2333344 55666666544 5899999999999999998877632 899
Q ss_pred ceeecccccCCCc
Q 002835 378 AACMAPLLLRPLL 390 (875)
Q Consensus 378 Ai~FgPtLLrp~~ 390 (875)
+|++.|+++|++.
T Consensus 343 ~I~~~~~~~r~pp 355 (670)
T KOG1449|consen 343 AIVWSPNLFRPPP 355 (670)
T ss_pred eeecCCCCCCCCC
Confidence 9999999999874
No 138
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=92.20 E-value=0.15 Score=60.17 Aligned_cols=101 Identities=15% Similarity=0.240 Sum_probs=65.3
Q ss_pred CCcEEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCC-CccceeecCCeeecCCCceeeecCCcceEEEE
Q 002835 81 GNAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQK-GSEVNLTLGGIDLNNSGSVVVKADKKLLTVLF 159 (875)
Q Consensus 81 ~~~v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~-g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~ 159 (875)
++.++|||.|+|..-+ ..+-..||++|=+..+.|.+-..-..-.+ .....+...++.+.. .+.....+.|.++
T Consensus 269 sreLiKEG~l~Kis~k--~~~~qeRylfLFNd~~lyc~~r~~~~~~k~~~r~~~s~~~~~v~~----~~~~~~~~tF~~~ 342 (623)
T KOG4424|consen 269 SRELIKEGQLQKISAK--NGTTQERYLFLFNDILLYCKPRKRLPGSKYEVRARCSISHMQVQE----DDNEELPHTFILT 342 (623)
T ss_pred HHHHhhccceeeeecc--CCCcceeEEEEehhHHHhhhhhhhcccceeccceeeccCcchhcc----cccccCCceEEEe
Confidence 4458999988876544 35779999999999888888655211111 001111222222211 1222345567766
Q ss_pred ecCCCCceeEEEecchhhHHHHHHHHHhhhc
Q 002835 160 PDGRDGRAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 160 ~~~~dgrty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
-+ .+...|+|.|+++-++|+.+|..+|.
T Consensus 343 G~---~r~vel~a~t~~ek~eWv~~I~~~Id 370 (623)
T KOG4424|consen 343 GK---KRGVELQARTEQEKKEWVQAIQDAID 370 (623)
T ss_pred cc---cceEEeecCchhhHHHHHHHHHHHHH
Confidence 43 57899999999999999999999985
No 139
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=91.70 E-value=0.68 Score=43.46 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=30.3
Q ss_pred ecCCcceEEEEecCCCCceeEEEecchhhHHHHHHHHHh
Q 002835 149 KADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALEN 187 (875)
Q Consensus 149 ~~~KK~~FvI~~~~~dgrty~fQAdSEeE~~eWI~AI~~ 187 (875)
-.++.+.|++.. .++..|.|.|.++++|+.|+..|+.
T Consensus 70 mPD~~nTFvLK~--~~~~eyI~Ea~d~~q~~SWla~Ir~ 106 (107)
T cd01231 70 MPDNLYTFVLKV--DDNTDIIFEVGDEQQLNSWLAELRY 106 (107)
T ss_pred ccCcccEEEEEe--cCCceEEEEcCCHHHHHHHHHHHhc
Confidence 356777777765 4577999999999999999999874
No 140
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=91.35 E-value=0.7 Score=43.00 Aligned_cols=88 Identities=15% Similarity=0.243 Sum_probs=53.9
Q ss_pred EEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCC--CCCC-CCCCccceeecCCeeecCCCceeeecCCcceEEEEe
Q 002835 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSD--PSAI-PQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFP 160 (875)
Q Consensus 84 v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~--k~~~-p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~ 160 (875)
.+++|+|.+.-.|. =|.|-|.|-++-|+|-+-. .... ........++|..+.+... .|.+.
T Consensus 3 Lv~eg~lvel~~~~----rK~R~~FLFnDlLvc~~ik~~~~~k~~kY~~~w~IPL~dl~~~~~-----------~~~~~- 66 (96)
T cd01228 3 LVKDSFLVELVEGS----RKLRHLFLFTDVLLCAKLKKTSRGKHQQYDCKWYIPLADLSFPSE-----------PFRIH- 66 (96)
T ss_pred ccccceeeeehhCC----CcceEEEeeccEEEEEEeeeccCccccccceeEEEEhHHheecch-----------hhhcc-
Confidence 57899887755443 2566677778888875532 1111 1111112355555444321 02222
Q ss_pred cCCCCceeEEEecchhhHHHHHHHHHhh
Q 002835 161 DGRDGRAFTLKAESLEDLYDWKTALENA 188 (875)
Q Consensus 161 ~~~dgrty~fQAdSEeE~~eWI~AI~~a 188 (875)
.+++++|+|.|.|..|+.+|+.+|...
T Consensus 67 -~~~~KSf~~~asS~~Er~eW~~hI~~~ 93 (96)
T cd01228 67 -NKNGKSYTFLLSSDYERSEWRESIQKL 93 (96)
T ss_pred -ccCCceEEEEecCHHHHHHHHHHHHHH
Confidence 345899999999999999999999764
No 141
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=90.74 E-value=3.2 Score=41.12 Aligned_cols=82 Identities=12% Similarity=0.255 Sum_probs=51.1
Q ss_pred eeEEEEEeCCeEEEecCCCCCCCCC-Cccce----eecCCeeecCCCceeeecCCcceEEEEecCCCCceeEEEecchhh
Q 002835 103 KKRWFILTHTSLVFFRSDPSAIPQK-GSEVN----LTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLED 177 (875)
Q Consensus 103 kKRWfVL~~~sL~yYKd~k~~~p~~-g~e~~----i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~~dgrty~fQAdSEeE 177 (875)
+.|++-|=...++|.|-..+..... .+.+. +.+..+.+... ..+..++|.|....+ ...|.|||.|.+.
T Consensus 30 ~eRhVFLFE~~viF~K~~~~~~~~~~~p~Y~yK~~ikls~lglte~-----v~gd~~kFeiw~~~~-~~~yilqA~t~e~ 103 (133)
T cd01227 30 MQRHIFLHEKAVLFCKKREENGEGEKAPSYSFKQSLKMTAVGITEN-----VKGDTKKFEIWYNAR-EEVYILQAPTPEI 103 (133)
T ss_pred ceeEEEEecceEEEEEEeccCCCCCcceeEEEeeeEEeeccccccc-----CCCCccEEEEEeCCC-CcEEEEEcCCHHH
Confidence 4578788888999998654221101 11121 11222222211 123355688887654 3689999999999
Q ss_pred HHHHHHHHHhhhc
Q 002835 178 LYDWKTALENALA 190 (875)
Q Consensus 178 ~~eWI~AI~~ai~ 190 (875)
...|+..|...+.
T Consensus 104 K~~Wv~~I~~iL~ 116 (133)
T cd01227 104 KAAWVNEIRKVLT 116 (133)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998873
No 142
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=89.33 E-value=4.5 Score=43.77 Aligned_cols=106 Identities=26% Similarity=0.305 Sum_probs=73.4
Q ss_pred hhhhhhhcchHHHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCC
Q 002835 648 VEIQRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLA---LENDVARLKDQLQKERDKRTAMEAGLGEFNGSF 724 (875)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~---le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~ 724 (875)
.+||.|...+..|..+|...-+.=..+|+-+++=++++.....+ ||+.|.+++.-||+.+.-..-++..+ +.++
T Consensus 10 ~~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl--~~v~- 86 (239)
T COG1579 10 LAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL--SAVK- 86 (239)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccc-
Confidence 57888999999999999876677777888888777766665554 78999999999999999999999888 2221
Q ss_pred CCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 002835 725 PIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQ 761 (875)
Q Consensus 725 ~~~~~~~~~~~~~l~~i~~~e~~v~~l~~~~~~l~~~ 761 (875)
-...-.++.-||-.|+-....|+.++.+|+..
T Consensus 87 -----~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~ 118 (239)
T COG1579 87 -----DERELRALNIEIQIAKERINSLEDELAELMEE 118 (239)
T ss_pred -----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122344445555555555555555554443
No 143
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=88.44 E-value=1.2 Score=46.79 Aligned_cols=73 Identities=25% Similarity=0.308 Sum_probs=49.5
Q ss_pred hhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCC--CCCCCChhhHHHHhhhhhhhhHHH
Q 002835 672 EILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFP--IPDTIDEKTKVELGEIAQAETDII 749 (875)
Q Consensus 672 ~~~~~~~~~~~~~~~~~r~~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~--~~~~~~~~~~~~l~~i~~~e~~v~ 749 (875)
+.|||--|||-+.=+.-|..||+|++.|+-|=.. |... .+..+ ....|-...++-=|-|-.+|||++
T Consensus 13 ~~LQaa~ekRE~lE~rLR~~lE~EL~~lr~qq~~----------~~~~-~~~~~~~~~~~L~~~LrEkEErILaLEad~~ 81 (205)
T PF12240_consen 13 AQLQAACEKREQLERRLRTRLERELESLRAQQRQ----------GNSS-GSSSPSNNASNLKELLREKEERILALEADMT 81 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----------CCCC-CCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999998888899999999988766322 1111 11111 122233344444466999999999
Q ss_pred HHHHHH
Q 002835 750 NLKQKA 755 (875)
Q Consensus 750 ~l~~~~ 755 (875)
|.|||-
T Consensus 82 kWEqkY 87 (205)
T PF12240_consen 82 KWEQKY 87 (205)
T ss_pred HHHHHH
Confidence 999985
No 144
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=88.43 E-value=1 Score=44.52 Aligned_cols=37 Identities=24% Similarity=0.314 Sum_probs=25.9
Q ss_pred CcceEEEEecCCCCceeEEEecchhhHHHHHHHHHhh
Q 002835 152 KKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENA 188 (875)
Q Consensus 152 KK~~FvI~~~~~dgrty~fQAdSEeE~~eWI~AI~~a 188 (875)
..+.|.|..-++.|..|+|.|+|..+++.|++.|..+
T Consensus 98 ~~yp~~~~hlG~~~~~~TLyA~s~~~R~~W~e~I~~q 134 (135)
T PF15405_consen 98 SLYPFTFRHLGRKGYSYTLYASSAQARQKWLEKIEEQ 134 (135)
T ss_dssp SEEEEEE---GGG-EEEEEE-SSHHHHHHHHHHHHHH
T ss_pred CccCEEEEEcCCCceEEEEEeCCHHHHHHHHHHHHhc
Confidence 3444566556677778999999999999999999764
No 145
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=87.91 E-value=3.4 Score=38.93 Aligned_cols=79 Identities=16% Similarity=0.147 Sum_probs=48.2
Q ss_pred eeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecCCCCceeEEEecchhhHHHHH
Q 002835 103 KKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWK 182 (875)
Q Consensus 103 kKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~~dgrty~fQAdSEeE~~eWI 182 (875)
++..+.|=++.|+|-.-..... ..-.-.+.|..+.+.+. .+...-+.+|.|... .+.+.+||++.++..+|+
T Consensus 20 ~rv~~FLfND~Lvva~~~~~~k--y~~~~~~~L~~i~V~ni---~D~~~~kNafki~t~---~~s~i~qaes~~~K~eWl 91 (100)
T cd01226 20 QRVMLFLLNDRLIVGNINAAGK--YVMESTYSLNSVAVVNV---KDRENAKKVLKLLIF---PESRIYQCESARIKTEWF 91 (100)
T ss_pred ceEEEEEeccEEEEEEecccce--EEEEEEEehHHeEEEec---CCCcCcCceEEEEeC---CccEEEEeCCHHHHHHHH
Confidence 3454556666676643221111 11122345555555432 123345677877765 578999999999999999
Q ss_pred HHHHhhh
Q 002835 183 TALENAL 189 (875)
Q Consensus 183 ~AI~~ai 189 (875)
..|..+.
T Consensus 92 ~~le~a~ 98 (100)
T cd01226 92 EELEQAK 98 (100)
T ss_pred HHHHHHh
Confidence 9999875
No 146
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=87.77 E-value=1.7 Score=38.08 Aligned_cols=65 Identities=28% Similarity=0.295 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 002835 688 RRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSE 764 (875)
Q Consensus 688 ~r~~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~v~~l~~~~~~l~~~l~~ 764 (875)
+|..|++-+..|+.+|++|...|..+|+-+......- .+ ..++.|+.-+..-.+|+.-|+.+|-.
T Consensus 3 ~~~~~~~~l~~L~~~l~~E~~~r~Gaenm~~~~~~~~---------~~---~~~~~~~~~l~es~~ki~~Lr~~L~k 67 (72)
T cd00089 3 VRSKLQSRLERLEKELSIELKVKEGAENLLRLYSDEK---------KK---KLLAEAEQMLRESKQKLELLKMQLEK 67 (72)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------Cc---cCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556899999999999999999999999876532211 11 56677888888899999999999865
No 147
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=87.56 E-value=3.1 Score=45.26 Aligned_cols=115 Identities=19% Similarity=0.404 Sum_probs=60.1
Q ss_pred hhhhhhhhcchHHHHHHHHHhhhc-c--hhHhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCC
Q 002835 647 EVEIQRLEDTKSDLQRKIADEVKG-N--EILEAS-LESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNG 722 (875)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~-~~~~~~~~~~~r~~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~ 722 (875)
...|+++-..+..|+.+|.+.+.. + ..+... +......+..|-..|.+.+.++++++++.+..-..+...|.....
T Consensus 26 ~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~ 105 (302)
T PF10186_consen 26 RSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRS 105 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888776540 1 111111 111222334444457777777777777777766666666654444
Q ss_pred CCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 002835 723 SFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSE 764 (875)
Q Consensus 723 ~~~~~~~~~~~~~~~l~~i~~~e~~v~~l~~~~~~l~~~l~~ 764 (875)
.++ ......+...+.+..+...+..+++++..|+.++..
T Consensus 106 ~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 144 (302)
T PF10186_consen 106 RLS---ASQDLVESRQEQLEELQNELEERKQRLSQLQSQLAR 144 (302)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 111222333333444444455555555554444443
No 148
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=86.90 E-value=2.7 Score=40.22 Aligned_cols=82 Identities=15% Similarity=0.131 Sum_probs=54.4
Q ss_pred ceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecCCCCceeEEEecchhhHHHH
Q 002835 102 WKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDW 181 (875)
Q Consensus 102 WkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~~dgrty~fQAdSEeE~~eW 181 (875)
=..||++|-...|.+..-.+.... ..-.-.+.|.++.++... +....++.|.|.-..- -...+.|.+.+|+.+|
T Consensus 28 ~~eRyLvLFp~~LlilS~s~r~sG-f~yqGkLPL~~i~v~~lE---d~e~~~~aFeI~G~li--~~i~v~C~~~~e~~~W 101 (111)
T cd01225 28 KRERYLVLFPNVLLMLSASPRMSG-FIYQGKLPLTGIIVTRLE---DTEALKNAFEISGPLI--ERIVVVCNNPQDAQEW 101 (111)
T ss_pred cceeEEEEcCceEEEEEcCCCccc-eEEeeeecccccEEechH---hccCccceEEEeccCc--CcEEEEeCCHHHHHHH
Confidence 367899999999988875432100 000123667777776532 2345677788874432 3578888899999999
Q ss_pred HHHHHhhh
Q 002835 182 KTALENAL 189 (875)
Q Consensus 182 I~AI~~ai 189 (875)
+..++..+
T Consensus 102 l~hL~~~~ 109 (111)
T cd01225 102 VELLNANN 109 (111)
T ss_pred HHHHHhhc
Confidence 99998754
No 149
>KOG1737 consensus Oxysterol-binding protein [Lipid transport and metabolism]
Probab=86.39 E-value=0.51 Score=58.36 Aligned_cols=91 Identities=19% Similarity=0.258 Sum_probs=57.5
Q ss_pred EEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecCC
Q 002835 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGR 163 (875)
Q Consensus 84 v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~~ 163 (875)
...+|||++..... +.|.+|||+|.++.|.||++.......-+++..+.... + .....+-+. .....
T Consensus 77 ~~~~g~l~k~~n~~--~~~~~r~f~l~~g~ls~~~~~~~~~~~~~~~~~~~~a~--i--------~~~~~~~~~-~~~~~ 143 (799)
T KOG1737|consen 77 ASLEGILLKWRNYS--KGPSSRWFVLSGGLLSYYFDNSFSKTTCGGGINLVTAW--I--------QNGERMDIC-SVDGS 143 (799)
T ss_pred ccccceeecccccc--CCcccceEEecCcceeeeccCCccccCCCCcccccccc--c--------ccCCCcccc-hhhcc
Confidence 45789888766655 79999999999999999998764422111111111111 1 111221112 22222
Q ss_pred CCceeEEEecchhhHHHHHHHHHhh
Q 002835 164 DGRAFTLKAESLEDLYDWKTALENA 188 (875)
Q Consensus 164 dgrty~fQAdSEeE~~eWI~AI~~a 188 (875)
...|+..+.+......|+.++.-+
T Consensus 144 -~q~~~~~~~~~~~~~~~~~~~~l~ 167 (799)
T KOG1737|consen 144 -CQIYLVELSKKLQRQGWLHALELA 167 (799)
T ss_pred -cchhhhhhhHHHhhcchhhhhhhc
Confidence 367889999999999999999876
No 150
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=83.27 E-value=53 Score=41.05 Aligned_cols=47 Identities=40% Similarity=0.478 Sum_probs=23.4
Q ss_pred hcchhHhhhHHHHHHHHH---------HHHHHHHHHH-HHHHHHHHHHHhHHHHHHh
Q 002835 669 KGNEILEASLESRKKALH---------ERRLALENDV-ARLKDQLQKERDKRTAMEA 715 (875)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~---------~~r~~le~~v-~~l~~ql~~e~~~~~~le~ 715 (875)
+.|.-||..+-.-.+++| |+|++-|++- ..|..||++||.-|..-|.
T Consensus 467 ~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~ 523 (697)
T PF09726_consen 467 QENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEE 523 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 456677764433333332 4444444433 2355667777655554443
No 151
>PF15406 PH_6: Pleckstrin homology domain
Probab=83.10 E-value=1.9 Score=41.14 Aligned_cols=29 Identities=21% Similarity=0.299 Sum_probs=24.4
Q ss_pred EEEEecCCCCceeEEEecchhhHHHHHHHHHh
Q 002835 156 TVLFPDGRDGRAFTLKAESLEDLYDWKTALEN 187 (875)
Q Consensus 156 FvI~~~~~dgrty~fQAdSEeE~~eWI~AI~~ 187 (875)
|.|... |...+|+|.+..|+..||.+|..
T Consensus 83 F~f~~~---G~khtF~A~s~aERD~Wv~~lk~ 111 (112)
T PF15406_consen 83 FHFKIK---GHKHTFEAASAAERDNWVAQLKA 111 (112)
T ss_pred EEEEeC---CceeeeecCCHHHhccHHHHhhc
Confidence 555554 88899999999999999999863
No 152
>KOG3549 consensus Syntrophins (type gamma) [Extracellular structures]
Probab=82.80 E-value=2.4 Score=47.53 Aligned_cols=106 Identities=18% Similarity=0.303 Sum_probs=69.2
Q ss_pred CCcEEEEeeeEeecCC-CCccCceeEEEEEeCCeEEEecCCCCCC-CCCCccceeecCC--eeecCCCceeeecCCcceE
Q 002835 81 GNAVFKSGPLFISSKG-IGWTSWKKRWFILTHTSLVFFRSDPSAI-PQKGSEVNLTLGG--IDLNNSGSVVVKADKKLLT 156 (875)
Q Consensus 81 ~~~v~KEGyL~k~kKg-~~~ksWkKRWfVL~~~sL~yYKd~k~~~-p~~g~e~~i~L~~--~~l~~s~sv~~~~~KK~~F 156 (875)
+.++..-||..-...+ ..+.+++.+|..|++.+++.|..++-.. .+...+....+.. |.+-... ...+.+++||
T Consensus 278 ~~qivyMGWvne~~q~~~s~q~y~P~FLaLkG~~~y~F~tPPv~t~dw~rAe~ty~vye~mfki~Kds--d~~D~R~~CF 355 (505)
T KOG3549|consen 278 GEQIVYMGWVNEGVQNNISWQSYKPRFLALKGTEVYLFETPPVNTADWSRAEVTYKVYETMFKIVKDS--DTVDSRQHCF 355 (505)
T ss_pred cceEEEeeeccccccCcccccccCceeEEecCcEEEEEcCCCcchhhhhhhhhhHHHHHHHHHHhccc--cccccccceE
Confidence 3458888976644433 3677889999999999999998665321 1111111111111 1111110 1234688999
Q ss_pred EEEecCCCCceeEEEecchhhHHHHHHHHHhhhc
Q 002835 157 VLFPDGRDGRAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 157 vI~~~~~dgrty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
.+... .|...||..+.+.|+..|-.+.+.|+.
T Consensus 356 ~~qs~--~ge~~yfsVEl~seLa~wE~sfq~Atf 387 (505)
T KOG3549|consen 356 LLQSS--GGEPRYFSVELRSELARWENSFQAATF 387 (505)
T ss_pred EEEcC--CCCceEEEEehhhHHHHHHHHHhhHHh
Confidence 98864 477889999999999999999988774
No 153
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=78.18 E-value=0.045 Score=61.36 Aligned_cols=118 Identities=22% Similarity=0.312 Sum_probs=78.1
Q ss_pred hhhhhcchHHHHH---HHHHhhhcchhHhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHhhhcCCCC-
Q 002835 650 IQRLEDTKSDLQR---KIADEVKGNEILEASLESRKKALHERRLA---LENDVARLKDQLQKERDKRTAMEAGLGEFNG- 722 (875)
Q Consensus 650 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~r~~---le~~v~~l~~ql~~e~~~~~~le~~~~~~~~- 722 (875)
.+-|++.+.+|+- ......-+||-|---||.|.+||..|-.. |-.--..|...|-+|+.--..|-.|=.+-.|
T Consensus 420 leelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtlltgdGgGtGs 499 (593)
T KOG4807|consen 420 LEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEITRLRTLLTGDGGGTGS 499 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHhccCCCCCCC
Confidence 4456666666653 44666778999998999999999877543 4444567888899998755556566555544
Q ss_pred CCCCCCCCChhhHHHHhhh-hhhhhHHHHHHHHHHHHHHHHH-HHhhhccCC
Q 002835 723 SFPIPDTIDEKTKVELGEI-AQAETDIINLKQKAKDLRVQLS-EQLEKNDGF 772 (875)
Q Consensus 723 ~~~~~~~~~~~~~~~l~~i-~~~e~~v~~l~~~~~~l~~~l~-~~~~~~~~~ 772 (875)
+++ ..+.--+||=+ -.-|..|.-|||+|..|...|. -+|...|.|
T Consensus 500 pla-----qgkdayELEVLLRVKEsEiQYLKqEissLkDELQtalrDKkyaS 546 (593)
T KOG4807|consen 500 PLA-----QGKDAYELEVLLRVKESEIQYLKQEISSLKDELQTALRDKKYAS 546 (593)
T ss_pred ccc-----cCcchhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 221 12222344432 3457788899999999998875 356666643
No 154
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=78.05 E-value=10 Score=42.05 Aligned_cols=93 Identities=24% Similarity=0.367 Sum_probs=58.9
Q ss_pred hhhhcchHHHHHHHHHhhhcchhHhhhHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCC
Q 002835 651 QRLEDTKSDLQRKIADEVKGNEILEASLESRKKALH----------ERRLALENDVARLKDQLQKERDKRTAMEAGLGEF 720 (875)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~r~~le~~v~~l~~ql~~e~~~~~~le~~~~~~ 720 (875)
..++..-.+|+..|..-++.|+.|+..+..-+.++. ..|..||.++..|+++|..++..|..|++
T Consensus 50 ~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~----- 124 (312)
T PF00038_consen 50 EMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLEN----- 124 (312)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred cchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHH-----
Confidence 345666667778888778888888776665444333 34456667777777777777777777776
Q ss_pred CCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 002835 721 NGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLS 763 (875)
Q Consensus 721 ~~~~~~~~~~~~~~~~~l~~i~~~e~~v~~l~~~~~~l~~~l~ 763 (875)
+.+.+-++|..+..- -++++.+|..++.
T Consensus 125 ------------~i~~L~eEl~fl~~~---heeEi~~L~~~~~ 152 (312)
T PF00038_consen 125 ------------QIQSLKEELEFLKQN---HEEEIEELREQIQ 152 (312)
T ss_dssp ------------HHHHHHHHHHHHHHH---HHHHHHTTSTT--
T ss_pred ------------HHHHHHHHHHHHHhh---hhhhhhhhhhccc
Confidence 445555666554433 5556666665553
No 155
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=76.65 E-value=31 Score=36.48 Aligned_cols=110 Identities=20% Similarity=0.312 Sum_probs=78.5
Q ss_pred hhhhhhcchHHHHHHHHHhhhcchhHh---------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-
Q 002835 649 EIQRLEDTKSDLQRKIADEVKGNEILE---------------ASLESRKKALHERRLALENDVARLKDQLQKERDKRTA- 712 (875)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~r~~le~~v~~l~~ql~~e~~~~~~- 712 (875)
+-+|=|.+..-|+.|+-+|++.=..-| ..|-++.+.-.|+=++||-||.+.+..--+|-.+|-+
T Consensus 18 a~ekRE~lE~rLR~~lE~EL~~lr~qq~~~~~~~~~~~~~~~~~L~~~LrEkEErILaLEad~~kWEqkYLEEs~mrq~a 97 (205)
T PF12240_consen 18 ACEKREQLERRLRTRLERELESLRAQQRQGNSSGSSSPSNNASNLKELLREKEERILALEADMTKWEQKYLEESAMRQFA 97 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777788888888874321111 2366777788899999999999999999999999854
Q ss_pred HHhh-----------hcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 002835 713 MEAG-----------LGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSE 764 (875)
Q Consensus 713 le~~-----------~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~v~~l~~~~~~l~~~l~~ 764 (875)
+++| ++++.. ...++.- ...++|..+..-+..||..+..||.||..
T Consensus 98 ~dAaa~aa~~rdttiI~~s~~-----~s~~~s~-r~~eel~~a~~K~qemE~RIK~LhaqI~E 154 (205)
T PF12240_consen 98 MDAAATAAAQRDTTIINHSPS-----ESYNSSL-REEEELHMANRKCQEMENRIKALHAQIAE 154 (205)
T ss_pred HHHHhhhHHHHHHHHHhcCCC-----CCCCccc-cchHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 3222 222222 1222221 67899999999999999999999998865
No 156
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.53 E-value=6.2 Score=44.42 Aligned_cols=51 Identities=20% Similarity=0.281 Sum_probs=38.5
Q ss_pred hhcchHHHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002835 653 LEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQL 703 (875)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~ql 703 (875)
.++....|+.|..+|+-.+-.+|++|.||++.|.+=-..|+..+.+|..|+
T Consensus 212 isa~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~ 262 (365)
T KOG2391|consen 212 ISAVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQL 262 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHH
Confidence 456677899999999999999999999999866655555555555544443
No 157
>KOG3727 consensus Mitogen inducible gene product (contains ERM and PH domains) [Cell cycle control, cell division, chromosome partitioning]
Probab=75.03 E-value=0.41 Score=56.34 Aligned_cols=87 Identities=14% Similarity=0.266 Sum_probs=54.6
Q ss_pred ccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecCCCCceeEEEecchhhH
Q 002835 99 WTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDL 178 (875)
Q Consensus 99 ~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~~dgrty~fQAdSEeE~ 178 (875)
.|..+|+||.++.-.+.+|++..+.. ..+...+.+.+|.+++..+++-..+.++|. .+......++++.|++|...
T Consensus 372 ~Kg~kr~f~t~~dl~~~~~~s~~~s~--~ap~~~i~l~gcev~~dV~~~~~k~~i~l~--~~~~~~msEi~LRCd~E~QY 447 (664)
T KOG3727|consen 372 LKGYKRYFFTFRDLHLSLYKSSEDSR--GAPAISINLKGCEVTPDVNLSQQKYAIKLL--VPTAEGMSEIWLRCDNEQQY 447 (664)
T ss_pred hhhhhhHHHHHHHHHHHHHhhHhhhc--CCCCCchhhcCcccCCccccccccceEEEE--eecCCccceeEEecCCHHHH
Confidence 45566777766665554444332211 122345777888888764443334445444 43333367899999999999
Q ss_pred HHHHHHHHhhh
Q 002835 179 YDWKTALENAL 189 (875)
Q Consensus 179 ~eWI~AI~~ai 189 (875)
..||.|.+-|.
T Consensus 448 A~WMAaCrLAS 458 (664)
T KOG3727|consen 448 ARWMAACRLAS 458 (664)
T ss_pred HHHHHHhhHhh
Confidence 99999988665
No 158
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=74.80 E-value=34 Score=41.22 Aligned_cols=102 Identities=25% Similarity=0.406 Sum_probs=74.1
Q ss_pred hhhhhhhhcchHHHHHHHHHhhhcchhHhhhHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCC
Q 002835 647 EVEIQRLEDTKSDLQRKIADEVKGNEILEASLESRK------KALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEF 720 (875)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~r~~le~~v~~l~~ql~~e~~~~~~le~~~~~~ 720 (875)
+..-.||+.-.+.+-..|+.=-+.|+.|-+-++.|+ +-|.+.+.+|+.||-++|.-+-.=.....+
T Consensus 220 ~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~-------- 291 (581)
T KOG0995|consen 220 DELKHRLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQH-------- 291 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHH--------
Confidence 344557777777777777666667777766665544 467788888888888877655444444443
Q ss_pred CCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 002835 721 NGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSEQ 765 (875)
Q Consensus 721 ~~~~~~~~~~~~~~~~~l~~i~~~e~~v~~l~~~~~~l~~~l~~~ 765 (875)
++.+...+=+||+..|-.+..|++++++|+.|+.-|
T Consensus 292 ---------~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q 327 (581)
T KOG0995|consen 292 ---------MEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ 327 (581)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444566677899999999999999999999999776
No 159
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=74.42 E-value=8.1 Score=35.85 Aligned_cols=30 Identities=37% Similarity=0.660 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHH------HHHhHHHHHHhhhc
Q 002835 689 RLALENDVARLKDQLQ------KERDKRTAMEAGLG 718 (875)
Q Consensus 689 r~~le~~v~~l~~ql~------~e~~~~~~le~~~~ 718 (875)
...|+++.++||+||. .||==|.||++||.
T Consensus 4 ~s~I~~eIekLqe~lk~~e~keaERigr~AlKaGL~ 39 (92)
T PF07820_consen 4 SSKIREEIEKLQEQLKQAETKEAERIGRIALKAGLG 39 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 4678899999999985 47888999999983
No 160
>KOG1738 consensus Membrane-associated guanylate kinase-interacting protein/connector enhancer of KSR-like [Nucleotide transport and metabolism]
Probab=74.04 E-value=0.65 Score=55.54 Aligned_cols=55 Identities=18% Similarity=0.262 Sum_probs=39.0
Q ss_pred EEEEeeeEeecCCC-CccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecC
Q 002835 84 VFKSGPLFISSKGI-GWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNN 142 (875)
Q Consensus 84 v~KEGyL~k~kKg~-~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~ 142 (875)
-..+||||+.+... +...|+|.||||.+..|+.|.+.....+ +..+.|-..+|..
T Consensus 562 G~~qg~~~r~k~~~~~~~kW~k~~~~l~~~~l~~y~n~~~~~~----e~~i~l~~~~i~~ 617 (638)
T KOG1738|consen 562 GDRQGWLTRLKLNHLTQEKWRKIWMVLNDDPLLNYRNHRVRAA----ESVIKLPLFTISV 617 (638)
T ss_pred chhhccchhhccchHHHHHhhhheeeecCchhhhhhhhhhhch----hheeeccchhhhh
Confidence 35678999877654 4577999999999999999998775533 2334444444443
No 161
>KOG4047 consensus Docking protein 1 (p62dok) [Signal transduction mechanisms]
Probab=73.49 E-value=1.6 Score=50.80 Aligned_cols=30 Identities=13% Similarity=-0.069 Sum_probs=27.2
Q ss_pred EEEEeeeEeecCCCCccCceeEEEEEeCCe
Q 002835 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTS 113 (875)
Q Consensus 84 v~KEGyL~k~kKg~~~ksWkKRWfVL~~~s 113 (875)
..|.|+++.+..+.+.+.|.+.|++|..+.
T Consensus 8 ~~k~g~~~~~~~r~~~k~~~~~~~~L~~gs 37 (429)
T KOG4047|consen 8 LVKDGVPDNHRNKFKVKNVRDDGAELGSGS 37 (429)
T ss_pred ccccCccchhhhhhccccccccceeeeccc
Confidence 579999999988888899999999999885
No 162
>PRK09039 hypothetical protein; Validated
Probab=70.59 E-value=25 Score=40.16 Aligned_cols=32 Identities=28% Similarity=0.216 Sum_probs=21.9
Q ss_pred hhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 002835 733 KTKVELGEIAQAETDIINLKQKAKDLRVQLSE 764 (875)
Q Consensus 733 ~~~~~l~~i~~~e~~v~~l~~~~~~l~~~l~~ 764 (875)
...++..+++.+-.+|..|.+++..|..||.+
T Consensus 124 ~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~ 155 (343)
T PRK09039 124 ELDSEKQVSARALAQVELLNQQIAALRRQLAA 155 (343)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 44455566666777777888888877777654
No 163
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=69.21 E-value=88 Score=39.32 Aligned_cols=109 Identities=21% Similarity=0.392 Sum_probs=60.6
Q ss_pred hhhhhhcchHHHHHHHHHhhhcchhHhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh----hhcCCC
Q 002835 649 EIQRLEDTKSDLQRKIADEVKGNEILEASLESRKK---ALHERRLALENDVARLKDQLQKERDKRTAMEA----GLGEFN 721 (875)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~r~~le~~v~~l~~ql~~e~~~~~~le~----~~~~~~ 721 (875)
-|+|++.++.+++.|+. .|++..++.-+ .+.++|..|.+.-++|.+.+..=++.+..|.. -|....
T Consensus 552 Yi~~~~~ar~ei~~rv~-------~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~ 624 (717)
T PF10168_consen 552 YIEKQDLAREEIQRRVK-------LLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLN 624 (717)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36777777777777764 33333333222 34444555555555555554433333333332 222222
Q ss_pred CCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 002835 722 GSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSEQLE 767 (875)
Q Consensus 722 ~~~~~~~~~~~~~~~~l~~i~~~e~~v~~l~~~~~~l~~~l~~~~~ 767 (875)
.+++. +-..-++.-+|+-.+...+-.|+..+..+..+++.|+.
T Consensus 625 ~~~P~---LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~ 667 (717)
T PF10168_consen 625 SQLPV---LSEAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQR 667 (717)
T ss_pred ccCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 33344566666667777888899999999988886554
No 164
>PRK10884 SH3 domain-containing protein; Provisional
Probab=67.95 E-value=40 Score=35.80 Aligned_cols=32 Identities=6% Similarity=0.032 Sum_probs=21.2
Q ss_pred hhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 002835 733 KTKVELGEIAQAETDIINLKQKAKDLRVQLSE 764 (875)
Q Consensus 733 ~~~~~l~~i~~~e~~v~~l~~~~~~l~~~l~~ 764 (875)
..+++-++++.+.+.+..|+.+..++...+..
T Consensus 140 ~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~ 171 (206)
T PRK10884 140 ENQKLKNQLIVAQKKVDAANLQLDDKQRTIIM 171 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666777777777777777765543
No 165
>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]
Probab=67.18 E-value=4 Score=46.55 Aligned_cols=107 Identities=23% Similarity=0.278 Sum_probs=64.1
Q ss_pred cEEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCC-CCCccceeecCCeeecCCCce--eeecCCcceEEEE
Q 002835 83 AVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIP-QKGSEVNLTLGGIDLNNSGSV--VVKADKKLLTVLF 159 (875)
Q Consensus 83 ~v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p-~~g~e~~i~L~~~~l~~s~sv--~~~~~KK~~FvI~ 159 (875)
.+-.-|||-.+-++.+...|+..+++|+...|.+|..-+.... +..+-..-.|-...+..+++- ....+-...|...
T Consensus 291 evkHiGWLaeq~~~~G~~~w~P~l~~lTekelliYes~P~~keaws~P~~~ypLvaTRLvhsg~~~~s~~~g~~lsFa~R 370 (506)
T KOG3551|consen 291 EVKHIGWLAEQVSGGGISQWKPKLMALTEKELLIYESMPWTKEAWSRPRHTYPLVATRLVHSGSGKGSVIKGLTLSFATR 370 (506)
T ss_pred chhhhhhHHhhccCCChhhhhhheeeechhhhhhhhcChhhHHHhcChhhhhhhhhhhheecCCCCCCCcCCceEEEEEe
Confidence 4666799988877777889999999999999999987653210 001111111111111111110 0111122345555
Q ss_pred ecCCCC-ceeEEEecchhhHHHHHHHHHhhh
Q 002835 160 PDGRDG-RAFTLKAESLEDLYDWKTALENAL 189 (875)
Q Consensus 160 ~~~~dg-rty~fQAdSEeE~~eWI~AI~~ai 189 (875)
+-++.| .+|+|.+++-.|+-.|...|-.--
T Consensus 371 tGTrqGV~thlfrvEThrdLa~WtRslVqGc 401 (506)
T KOG3551|consen 371 TGTRQGVETHLFRVETHRELAAWTRSLVQGC 401 (506)
T ss_pred cccccceEEEEEEeccHHHHHHHHHHHHHHH
Confidence 444444 499999999999999999885433
No 166
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=67.04 E-value=59 Score=35.35 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=24.9
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccCC
Q 002835 736 VELGEIAQAETDIINLKQKAKDLRVQLSEQLEKNDGF 772 (875)
Q Consensus 736 ~~l~~i~~~e~~v~~l~~~~~~l~~~l~~~~~~~~~~ 772 (875)
....++...+..+..|++++..-+.+|.++...-|.-
T Consensus 123 ~~~~~~~~~~~~l~~l~~~l~~~r~~l~~~l~~ifpI 159 (302)
T PF10186_consen 123 ELQNELEERKQRLSQLQSQLARRRRQLIQELSEIFPI 159 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3445666666777777777777777777776665544
No 167
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=65.23 E-value=50 Score=39.90 Aligned_cols=70 Identities=31% Similarity=0.447 Sum_probs=44.0
Q ss_pred hhhhhhhhhcchHHHHHHHHHhhhc------ch--------hHhhh---HHHHHHHHHH-------HHHHHHHHHHHHHH
Q 002835 646 NEVEIQRLEDTKSDLQRKIADEVKG------NE--------ILEAS---LESRKKALHE-------RRLALENDVARLKD 701 (875)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~--------~~~~~---~~~~~~~~~~-------~r~~le~~v~~l~~ 701 (875)
=|..|-||+.--.+|+.+..|-.|+ +. .|||. +-+|.+++.+ -=..|..++++++.
T Consensus 111 ~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 111 LEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 4667778887777888777554332 21 13332 3345443332 22236667778888
Q ss_pred HHHHHHhHHHHHHh
Q 002835 702 QLQKERDKRTAMEA 715 (875)
Q Consensus 702 ql~~e~~~~~~le~ 715 (875)
||.+|+-||.-+++
T Consensus 191 ~ld~Etllr~d~~n 204 (546)
T KOG0977|consen 191 QLDDETLLRVDLQN 204 (546)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998887
No 168
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=64.34 E-value=17 Score=33.81 Aligned_cols=45 Identities=33% Similarity=0.610 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHH------HHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhh
Q 002835 691 ALENDVARLKDQLQ------KERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIA 742 (875)
Q Consensus 691 ~le~~v~~l~~ql~------~e~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~l~~i~ 742 (875)
.+..++++||+||. .||==|.||.+||..- ..=|...++.+++||
T Consensus 7 ~I~~eI~kLqe~lk~~e~keAERigRiAlKAGLgei-------eI~d~eL~~aFeeiA 57 (98)
T PRK13848 7 KIREEIAKLQEQLKQAETREAERIGRIALKAGLGEI-------EIEEAELQAAFEELA 57 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccc-------ccCHHHHHHHHHHHH
Confidence 45566777777774 5888999999999431 122345566666665
No 169
>PRK11637 AmiB activator; Provisional
Probab=64.01 E-value=37 Score=39.60 Aligned_cols=35 Identities=20% Similarity=0.164 Sum_probs=20.3
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccC
Q 002835 737 ELGEIAQAETDIINLKQKAKDLRVQLSEQLEKNDG 771 (875)
Q Consensus 737 ~l~~i~~~e~~v~~l~~~~~~l~~~l~~~~~~~~~ 771 (875)
.=.+|..++.+|..++.++..+..+|.+...-.|-
T Consensus 101 ~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 101 LNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666666666666666666666655444443
No 170
>PF15411 PH_10: Pleckstrin homology domain
Probab=63.86 E-value=64 Score=31.22 Aligned_cols=97 Identities=20% Similarity=0.206 Sum_probs=56.9
Q ss_pred EEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCC---------CCccceeecC-CeeecCCCceeeec-CCc
Q 002835 85 FKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQ---------KGSEVNLTLG-GIDLNNSGSVVVKA-DKK 153 (875)
Q Consensus 85 ~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~---------~g~e~~i~L~-~~~l~~s~sv~~~~-~KK 153 (875)
...|-+.+.+. ..|+-++|-|=..-|.++|..+..... +.....+.|+ .|-+.+...+.... ...
T Consensus 8 ll~g~~~V~k~----~~erE~~vYLFe~illc~kE~~~~~~~~~~~~~~~~~~~~~~L~LKGrI~i~~i~~v~~~s~~g~ 83 (116)
T PF15411_consen 8 LLHGTLTVGKD----DSEREYEVYLFEKILLCCKEVKPKKKKSKQISSKKKKKKKTKLQLKGRIYISNITEVSSSSKPGS 83 (116)
T ss_pred EEccEEEEEeC----CcceeeeeeeeeeeEEEEecCccCccchhhcccccccCCCceEEEeeEEEEEeeeeeeccCCCCc
Confidence 44554444432 569999999999999999977644221 1112223343 34455444442222 122
Q ss_pred ceEEEEec-CCCCceeEEEecchhhHHHHHHHH
Q 002835 154 LLTVLFPD-GRDGRAFTLKAESLEDLYDWKTAL 185 (875)
Q Consensus 154 ~~FvI~~~-~~dgrty~fQAdSEeE~~eWI~AI 185 (875)
+...|.-. ...--.|+|...+++.|+.|-.+|
T Consensus 84 ~~L~i~w~~d~e~~~F~lrf~nee~l~~W~~~L 116 (116)
T PF15411_consen 84 YSLQISWKGDPELENFTLRFRNEEQLEQWRSAL 116 (116)
T ss_pred eEEEEEEcCCCCCceEEEEeCCHHHHHHHHhhC
Confidence 33333331 123458999999999999998875
No 171
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=63.42 E-value=27 Score=42.11 Aligned_cols=50 Identities=18% Similarity=0.251 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHH
Q 002835 689 RLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVEL 738 (875)
Q Consensus 689 r~~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~l 738 (875)
+..+++++..|++||+.-.+.-.|-+.-...-...++++..+=++|.++|
T Consensus 278 ~~~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeL 327 (546)
T PF07888_consen 278 AQQLQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAEL 327 (546)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577777888888877665555444433333333333333333443333
No 172
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=62.58 E-value=75 Score=37.46 Aligned_cols=44 Identities=14% Similarity=0.318 Sum_probs=32.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhc
Q 002835 675 EASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLG 718 (875)
Q Consensus 675 ~~~~~~~~~~~~~~r~~le~~v~~l~~ql~~e~~~~~~le~~~~ 718 (875)
++.++.|.+.+.....++.+.+..++++++.=..+..+++.++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 203 (457)
T TIGR01000 160 NDKSQTQNEAAEKTKAQLDQQISKTDQKLQDYQALKNAISNGTK 203 (457)
T ss_pred hhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45566677777777777888888888888777777777777653
No 173
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=62.58 E-value=39 Score=42.56 Aligned_cols=72 Identities=14% Similarity=0.217 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhc
Q 002835 690 LALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSEQLEKN 769 (875)
Q Consensus 690 ~~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~v~~l~~~~~~l~~~l~~~~~~~ 769 (875)
..+|+.+..||.||..=.+...++|.+|.-... .-+.+-.-...+|+.+..|..|+..|..+|-.+|+.+
T Consensus 627 ~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e----------~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~ 696 (769)
T PF05911_consen 627 KESEQKLEELQSELESAKESNSLAETQLKAMKE----------SYESLETRLKDLEAEAEELQSKISSLEEELEKERALS 696 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 458999999999999999999999998854222 1122333344578888889999999999999988875
Q ss_pred cC
Q 002835 770 DG 771 (875)
Q Consensus 770 ~~ 771 (875)
-.
T Consensus 697 ~e 698 (769)
T PF05911_consen 697 EE 698 (769)
T ss_pred hh
Confidence 44
No 174
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=62.46 E-value=10 Score=45.38 Aligned_cols=94 Identities=15% Similarity=0.128 Sum_probs=58.6
Q ss_pred EEeeeEeecCCCCccCceeEEEEEeCC---eEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecC
Q 002835 86 KSGPLFISSKGIGWTSWKKRWFILTHT---SLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDG 162 (875)
Q Consensus 86 KEGyL~k~kKg~~~ksWkKRWfVL~~~---sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~ 162 (875)
..++|.+...+ .+.|.+.||+.-.. .++.|-.+.+...+ -.+.+.+|.+...+. ....+..+.|.++..
T Consensus 499 ~~s~l~~~~~~--~~~g~~a~~~vP~~d~~~~~~Yg~~qDv~a~----~~iPl~~~~v~~pe~-~~~~D~~~~~k~~~s- 570 (623)
T KOG4424|consen 499 ICSHLKYMEAA--GKTGILAWSVVPKSDPLVDYSYGSPQDVRAQ----ATIPLPGVEVTIPEF-VRREDLFHVFKLVQS- 570 (623)
T ss_pred ehhhHHHHhhc--CccceeeeeeccCCCCccccccCCccccccc----cccccCccccCCCcc-cccchhcchhhhhhh-
Confidence 33444444433 37999999988643 56667665543221 236667776653221 122344444444433
Q ss_pred CCCceeEEEecchhhHHHHHHHHHhhh
Q 002835 163 RDGRAFTLKAESLEDLYDWKTALENAL 189 (875)
Q Consensus 163 ~dgrty~fQAdSEeE~~eWI~AI~~ai 189 (875)
...++|.|++++-.+.|+..+.-|.
T Consensus 571 --~~~~~~~a~~~q~qq~wl~~l~~A~ 595 (623)
T KOG4424|consen 571 --HLSWHLAADDEQLQQRWLEVLLLAV 595 (623)
T ss_pred --cceeeeccCCHHHHHHHHHHHHhhh
Confidence 4579999999999999999998876
No 175
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=61.43 E-value=67 Score=36.64 Aligned_cols=22 Identities=18% Similarity=0.422 Sum_probs=9.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHH
Q 002835 741 IAQAETDIINLKQKAKDLRVQL 762 (875)
Q Consensus 741 i~~~e~~v~~l~~~~~~l~~~l 762 (875)
++.+++.+..+++++..+..++
T Consensus 212 l~~~~~~l~~~~~~l~~~~~~~ 233 (423)
T TIGR01843 212 LGRLEAELEVLKRQIDELQLER 233 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333
No 176
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.97 E-value=1.3e+02 Score=37.87 Aligned_cols=118 Identities=22% Similarity=0.224 Sum_probs=65.7
Q ss_pred HHHhhhcchhHhhhHHHHHH----HHHHHHHHHH------HHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChh
Q 002835 664 IADEVKGNEILEASLESRKK----ALHERRLALE------NDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEK 733 (875)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~----~~~~~r~~le------~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~~~~~~~~~ 733 (875)
--+|-|.---||+.|||... .=.|||-.+| ++.. -|-||+=|+..|.-|-+ .
T Consensus 363 qEqErk~qlElekqLerQReiE~qrEEerkkeie~rEaar~ElE-kqRqlewErar~qem~~-----------------Q 424 (1118)
T KOG1029|consen 363 QEQERKAQLELEKQLERQREIERQREEERKKEIERREAAREELE-KQRQLEWERARRQEMLN-----------------Q 424 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh-----------------h
Confidence 34555556667777765432 1122222222 1221 25678888888876554 3
Q ss_pred hHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcchhccc--chhhhhhccchHHHHHHHhh
Q 002835 734 TKVELGEIAQAETDIINLKQKAKDLRVQLSEQLEKNDGFVGDSSNQLHQT--STKLKDKQRDNEAAAERLRI 803 (875)
Q Consensus 734 ~~~~l~~i~~~e~~v~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 803 (875)
..++-+.|.-+-+-...|.++...|++++-| -.|-+||..-..... .---..+|.|....-+.+|.
T Consensus 425 k~reqe~iv~~nak~~ql~~eletLn~k~qq----ls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlq 492 (1118)
T KOG1029|consen 425 KNREQEWIVYLNAKKKQLQQELETLNFKLQQ----LSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQ 492 (1118)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3456677888888888888888888887755 455666643321111 11223455566555555543
No 177
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=60.82 E-value=29 Score=40.11 Aligned_cols=70 Identities=29% Similarity=0.369 Sum_probs=45.9
Q ss_pred hhhhhcchHHHHHHHHHhh------------------------hcchhHhhhHHHHHHHH-----------HHHHH---H
Q 002835 650 IQRLEDTKSDLQRKIADEV------------------------KGNEILEASLESRKKAL-----------HERRL---A 691 (875)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~-----------~~~r~---~ 691 (875)
|++||..|.-||.++..+| .-=.+|||.+||=+..| ..||. .
T Consensus 210 mdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~ 289 (552)
T KOG2129|consen 210 MDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVD 289 (552)
T ss_pred HHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6888999999998873332 11236899998865522 22222 2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhcC
Q 002835 692 LENDVARLKDQLQKERDKRTAMEAGLGE 719 (875)
Q Consensus 692 le~~v~~l~~ql~~e~~~~~~le~~~~~ 719 (875)
.+.+-+|||.-|+.|.+.|.||=.-|+.
T Consensus 290 ~reen~rlQrkL~~e~erRealcr~lsE 317 (552)
T KOG2129|consen 290 HREENERLQRKLINELERREALCRMLSE 317 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4556678888888888888877654433
No 178
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=60.79 E-value=8.1 Score=48.67 Aligned_cols=12 Identities=0% Similarity=0.025 Sum_probs=5.3
Q ss_pred chhhHhhHHHHH
Q 002835 295 AHIIADCVKYVI 306 (875)
Q Consensus 295 ~h~VAslLK~fL 306 (875)
+..|+...+..|
T Consensus 476 ~~~l~~~~~~~l 487 (784)
T PF04931_consen 476 LYTLVQIASELL 487 (784)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 179
>KOG4140 consensus Nuclear protein Ataxin-7 [Chromatin structure and dynamics]
Probab=60.36 E-value=48 Score=39.20 Aligned_cols=41 Identities=24% Similarity=0.303 Sum_probs=29.8
Q ss_pred HHHhhhcch-hHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002835 664 IADEVKGNE-ILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAM 713 (875)
Q Consensus 664 ~~~~~~~~~-~~~~~~~~~~~~~~~~r~~le~~v~~l~~ql~~e~~~~~~l 713 (875)
+|.+-|+|. .||+.++|| ++|+|...++.|||+|.+-+.-+
T Consensus 273 LA~~~~~~~~~~~~~~~~r---------~~~~~~~~~~~Q~Q~~~~~~~~~ 314 (659)
T KOG4140|consen 273 LAPEDNNNRKFLNKRLSER---------EFDPDIHCGVIQLQTKKPCTRSL 314 (659)
T ss_pred cchhhhhhHHHHHHHHHHh---------hhhhhhhhhhHhhccCCCcchhH
Confidence 344445554 467767665 68999999999999998876654
No 180
>cd05394 RasGAP_RASA2 RASA2 (or GAP1(m)) is a member of the GAP1 family of Ras GTPase-activating proteins that includes GAP1_IP4BP (or RASA3), CAPRI, and RASAL. In vitro, RASA2 has been shown to bind inositol 1,3,4,5-tetrakisphosphate (IP4), the water soluble inositol head group of the lipid second messenger phosphatidylinositol 3,4,5-trisphosphate (PIP3). In vivo studies also demonstrated that RASA2 binds PIP3, and it is recruited to the plasma membrane following agonist stimulation of PI 3-kinase. Furthermore, the membrane translocation is a consequence of the ability of its pleckstrin homology (PH) domain to bind PIP3.
Probab=59.66 E-value=2.2 Score=47.83 Aligned_cols=28 Identities=39% Similarity=0.802 Sum_probs=22.1
Q ss_pred cEEEEeeeEeecCCC---CccCceeEEEEEe
Q 002835 83 AVFKSGPLFISSKGI---GWTSWKKRWFILT 110 (875)
Q Consensus 83 ~v~KEGyL~k~kKg~---~~ksWkKRWfVL~ 110 (875)
.+.|+|+|.++.+|. ++++||||||.|+
T Consensus 282 ~~~~e~~~~~r~~~~~~~~~~~~kkr~~~l~ 312 (313)
T cd05394 282 VHLKEGEMYKRAQGRTRIGKKNFKKRWFCLT 312 (313)
T ss_pred hhhHHHHHHhhccCCCccccccchhheeecC
Confidence 378999998865443 5678999999986
No 181
>cd05134 RasGAP_RASA3 RASA3 (or GAP1_IP4BP) is a member of the GAP1 family and has been shown to specifically bind 1,3,4,5-tetrakisphosphate (IP4). Thus, RASA3 may function as an IP4 receptor. The members of GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. Purified RASA3 stimulates GAP activity on Ras with about a five-fold lower potency than p120RasGAP, but shows no GAP-stimulating activity at all against Rac or Rab3A.
Probab=58.69 E-value=2.9 Score=46.88 Aligned_cols=29 Identities=34% Similarity=0.702 Sum_probs=21.9
Q ss_pred cEEEEeeeEeecC---CCCccCceeEEEEEeC
Q 002835 83 AVFKSGPLFISSK---GIGWTSWKKRWFILTH 111 (875)
Q Consensus 83 ~v~KEGyL~k~kK---g~~~ksWkKRWfVL~~ 111 (875)
.+.|+|+|.++.. ..++++||||||.|+.
T Consensus 279 ~~~~~~~~~~r~~~~~~~~~~~~k~r~~~lt~ 310 (310)
T cd05134 279 ILLKEGFMIKRAQGRKRFGMKNFKKRWFRLTN 310 (310)
T ss_pred chhhhhhHHHhcccCCcccccchhheeeecCC
Confidence 3899999987443 2356789999999863
No 182
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=57.28 E-value=2e+02 Score=28.20 Aligned_cols=28 Identities=29% Similarity=0.277 Sum_probs=16.6
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 002835 735 KVELGEIAQAETDIINLKQKAKDLRVQL 762 (875)
Q Consensus 735 ~~~l~~i~~~e~~v~~l~~~~~~l~~~l 762 (875)
..+-.+|..++..+..|..+=.-||-||
T Consensus 101 ~~le~e~~~~~~r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 101 EQLEKELSELEQRIEDLNEQNKLLHDQL 128 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666666666665
No 183
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=57.13 E-value=92 Score=38.03 Aligned_cols=77 Identities=22% Similarity=0.332 Sum_probs=58.3
Q ss_pred hcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHH
Q 002835 669 KGNEILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDI 748 (875)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~v 748 (875)
..|..|++.|++-|+.+...+..|++=-.+....+++++.+++ .-.+|..+|..+
T Consensus 436 ~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~-------------------------~~~~I~~L~~~L 490 (652)
T COG2433 436 EENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRA-------------------------RDRRIERLEKEL 490 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-------------------------HHHHHHHHHHHH
Confidence 5678999999999988888777777776666666666666554 556777788887
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc
Q 002835 749 INLKQKAKDLRVQLSEQLEKND 770 (875)
Q Consensus 749 ~~l~~~~~~l~~~l~~~~~~~~ 770 (875)
.+-+.++..|...|++-++.+-
T Consensus 491 ~e~~~~ve~L~~~l~~l~k~~~ 512 (652)
T COG2433 491 EEKKKRVEELERKLAELRKMRK 512 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 7778888888888887775544
No 184
>cd05128 RasGAP_GAP1_like The GAP1 family of Ras GTPase-activating proteins includes GAP1(m) (or RASA2), GAP1_IP4BP (or RASA3), Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), and Ras GTPase activating-like proteins (RASAL) or RASAL1. The members are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin homology domain that is associated with a Bruton's tyrosine kinase motif. While this domain structure is conserved, a small change in the function of each individual domain and the interaction between domains has a marked effect on the regulation of each protein.
Probab=56.83 E-value=3.8 Score=46.15 Aligned_cols=28 Identities=39% Similarity=0.727 Sum_probs=21.1
Q ss_pred cEEEEeeeEeecCC---CCccCceeEEEEEe
Q 002835 83 AVFKSGPLFISSKG---IGWTSWKKRWFILT 110 (875)
Q Consensus 83 ~v~KEGyL~k~kKg---~~~ksWkKRWfVL~ 110 (875)
.++|+|++.++.+| .+.++||||||.|+
T Consensus 285 ~~~k~g~~~~~~~~~~~~~~~~~k~r~~~lt 315 (315)
T cd05128 285 VVLKEGFMIKRAQGRGRLGRKNFKKRYFRLT 315 (315)
T ss_pred hhhhhhhhHhhcccCCCccccchhheeeecC
Confidence 38999987764332 35678999999984
No 185
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=56.82 E-value=73 Score=32.79 Aligned_cols=82 Identities=20% Similarity=0.277 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHhhhcCCCCCCC-CCCCCChhhHHHHhhhhhhhhHHHHHHHHHHH
Q 002835 680 SRKKALHERRLALENDVARLKDQLQKERDK-RTAMEAGLGEFNGSFP-IPDTIDEKTKVELGEIAQAETDIINLKQKAKD 757 (875)
Q Consensus 680 ~~~~~~~~~r~~le~~v~~l~~ql~~e~~~-~~~le~~~~~~~~~~~-~~~~~~~~~~~~l~~i~~~e~~v~~l~~~~~~ 757 (875)
..-..++..+-.|..||..|+.+|.+|+.. ++-+.-=++.-.+... ....++.+.++.= .-++.+|++|+-++..
T Consensus 73 ~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~---~ki~~ei~~lr~~iE~ 149 (177)
T PF07798_consen 73 SEFAELRSENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELKIQELN---NKIDTEIANLRTEIES 149 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 333466677777999999999999998753 2222222222222110 0011222211111 2235556667777777
Q ss_pred HHHHHHH
Q 002835 758 LRVQLSE 764 (875)
Q Consensus 758 l~~~l~~ 764 (875)
+.+++.+
T Consensus 150 ~K~~~lr 156 (177)
T PF07798_consen 150 LKWDTLR 156 (177)
T ss_pred HHHHHHH
Confidence 7777664
No 186
>PRK09039 hypothetical protein; Validated
Probab=56.66 E-value=1.1e+02 Score=34.90 Aligned_cols=21 Identities=33% Similarity=0.398 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHhHHHHHHhh
Q 002835 696 VARLKDQLQKERDKRTAMEAG 716 (875)
Q Consensus 696 v~~l~~ql~~e~~~~~~le~~ 716 (875)
|.+|+.|+..=+.-.++|+.+
T Consensus 139 V~~L~~qI~aLr~Qla~le~~ 159 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAA 159 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444443333333334333
No 187
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=56.06 E-value=1e+02 Score=30.17 Aligned_cols=76 Identities=29% Similarity=0.476 Sum_probs=39.0
Q ss_pred hhhhhcchHHHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCC
Q 002835 650 IQRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDT 729 (875)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~~~~~ 729 (875)
|.+|+..|..|...|.+=.+.|..++ +...+--.|+++++.|+...+ ++|+-
T Consensus 39 l~~l~~~r~~l~~Eiv~l~~~~e~~~--------~~~~~~~~L~~el~~l~~ry~------t~Lel-------------- 90 (120)
T PF12325_consen 39 LARLEAERDELREEIVKLMEENEELR--------ALKKEVEELEQELEELQQRYQ------TLLEL-------------- 90 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH------HHHHH--------------
Confidence 44555555555555555444444442 233334456666666655443 22221
Q ss_pred CChhhHHHHhhhhhhhhHHHHHHHHHHH
Q 002835 730 IDEKTKVELGEIAQAETDIINLKQKAKD 757 (875)
Q Consensus 730 ~~~~~~~~l~~i~~~e~~v~~l~~~~~~ 757 (875)
+-+| -|++--+++||..||.-...
T Consensus 91 lGEK----~E~veEL~~Dv~DlK~myr~ 114 (120)
T PF12325_consen 91 LGEK----SEEVEELRADVQDLKEMYRE 114 (120)
T ss_pred hcch----HHHHHHHHHHHHHHHHHHHH
Confidence 2222 25566678888888876543
No 188
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=55.86 E-value=2e+02 Score=31.92 Aligned_cols=89 Identities=13% Similarity=0.203 Sum_probs=57.2
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHH
Q 002835 674 LEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQ 753 (875)
Q Consensus 674 ~~~~~~~~~~~~~~~r~~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~v~~l~~ 753 (875)
+++++..+.+++...+-+|+.++..++.++.+-..-...=..|- .-+...+--...+.--+.+..+++.+..|..
T Consensus 129 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~-----~~tg~~G~Gp~~~~~~~~~~~~~~~l~~l~~ 203 (301)
T PF14362_consen 129 VQASFDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGT-----GGTGVPGKGPRYKEKRAQLDAAQAELDTLQA 203 (301)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555565555555555554443333333332 2333445556778888888999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 002835 754 KAKDLRVQLSEQLE 767 (875)
Q Consensus 754 ~~~~l~~~l~~~~~ 767 (875)
+..+...+|.+++.
T Consensus 204 ~~~~~~~~l~~~~~ 217 (301)
T PF14362_consen 204 QIDAAIAALDAQIA 217 (301)
T ss_pred hHHHHHHHHHhhHH
Confidence 99999999987776
No 189
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=55.76 E-value=91 Score=37.71 Aligned_cols=99 Identities=20% Similarity=0.293 Sum_probs=68.5
Q ss_pred hhhcchHHHHHHHHHhhhcchhHhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCC
Q 002835 652 RLEDTKSDLQRKIADEVKGNEILEASLESRKK---ALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPD 728 (875)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~r~~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~~~~ 728 (875)
-|-+.|+||-.++..=--+|.|||-.||.||+ .|.++=..||.++++++..+..- .+.+++. ...
T Consensus 319 ALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~a--r~~~~~~----------e~d 386 (832)
T KOG2077|consen 319 ALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDA--RQKAKDD----------EDD 386 (832)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhccc----------ccc
Confidence 36678999999998888899999999999999 47777788888888877655332 2232222 445
Q ss_pred CCChhhHHHHhhhhhh--hhHHHHHHHHHHHHHHHH
Q 002835 729 TIDEKTKVELGEIAQA--ETDIINLKQKAKDLRVQL 762 (875)
Q Consensus 729 ~~~~~~~~~l~~i~~~--e~~v~~l~~~~~~l~~~l 762 (875)
.||--.+.-..-+-++ =-+-...|.++++|+.-+
T Consensus 387 diPmAqRkRFTRvEMaRVLMeRNqYKErLMELqEav 422 (832)
T KOG2077|consen 387 DIPMAQRKRFTRVEMARVLMERNQYKERLMELQEAV 422 (832)
T ss_pred cccHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 6777766666544332 233445778888887543
No 190
>PLN02372 violaxanthin de-epoxidase
Probab=55.68 E-value=28 Score=40.35 Aligned_cols=27 Identities=19% Similarity=0.227 Sum_probs=22.4
Q ss_pred CCCchhhhhhhhhcchHHHHHHHHHhh
Q 002835 642 GPSDNEVEIQRLEDTKSDLQRKIADEV 668 (875)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (875)
.|+-+--+++|||.+-.+....|.+||
T Consensus 355 sCgpep~l~~~l~~~~e~~e~~i~~e~ 381 (455)
T PLN02372 355 TCGPEPPLLERLEKDVEEGEKTIVKEA 381 (455)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 456666679999999999999999883
No 191
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=55.41 E-value=1.1e+02 Score=34.41 Aligned_cols=119 Identities=23% Similarity=0.180 Sum_probs=86.9
Q ss_pred CCcCCCCCCchhhhhhhhhcch--HHHHHHHHHhhhcch--hHhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHH--H
Q 002835 636 SMESIDGPSDNEVEIQRLEDTK--SDLQRKIADEVKGNE--ILEASLESRKKALHERRLALE---NDVARLKDQLQK--E 706 (875)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~r~~le---~~v~~l~~ql~~--e 706 (875)
.-|.-|.|+---++|+-=|+++ .++|-.++.+||.|= -||-.-..--+++|..|--|| .|-.-+..+-+| |
T Consensus 96 gkeLg~dSs~g~tl~~~Gesm~~i~evk~sl~~~vkq~FldpL~~l~~~elK~i~hh~KKLEgRRldyD~kkkk~~K~~d 175 (366)
T KOG1118|consen 96 GKELGDDSSFGHTLIDAGESMREIGEVKDSLDDNVKQNFLDPLQNLQLKELKDIQHHRKKLEGRRLDYDYKKKKQGKIKD 175 (366)
T ss_pred HHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHhhhhhhHHHHHHHHhccCCh
Confidence 3455566777778888878776 588999999999995 477774444455555555555 234455556666 8
Q ss_pred HhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 002835 707 RDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSEQLE 767 (875)
Q Consensus 707 ~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~v~~l~~~~~~l~~~l~~~~~ 767 (875)
-+||.|||.= =-++-.++-.=++++|.||-...|=++-+..||+=.||
T Consensus 176 EelrqA~eKf-------------EESkE~aE~sM~nlle~d~eqvsqL~~Li~aqLdfhrq 223 (366)
T KOG1118|consen 176 EELRQALEKF-------------EESKELAEDSMFNLLENDVEQVSQLSALIQAQLDFHRQ 223 (366)
T ss_pred HHHHHHHHHH-------------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 8999999871 12355677777999999999999999999999987776
No 192
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=55.04 E-value=1.2e+02 Score=34.37 Aligned_cols=21 Identities=33% Similarity=0.593 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002835 684 ALHERRLALENDVARLKDQLQ 704 (875)
Q Consensus 684 ~~~~~r~~le~~v~~l~~ql~ 704 (875)
++.+++.+|+.++.+|+....
T Consensus 181 ~l~~~~~~L~~e~~~Lk~~~~ 201 (325)
T PF08317_consen 181 KLRERKAELEEELENLKQLVE 201 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 566666677777777766543
No 193
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=54.92 E-value=2.4e+02 Score=30.12 Aligned_cols=101 Identities=23% Similarity=0.263 Sum_probs=64.7
Q ss_pred chhhhhhhhhcchHHHHHHHHH--------------hhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh
Q 002835 645 DNEVEIQRLEDTKSDLQRKIAD--------------EVKGNEILEASLESRKKALHERRLALENDVARLKD--QLQKERD 708 (875)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~--ql~~e~~ 708 (875)
+.++.-+.|.+.++.|.+.-.. =...|..|.+-+++=.+.|...|-++| +|-+-++ |++.-..
T Consensus 98 d~~~w~~al~na~a~lehq~~R~~NLeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie-~vN~~RK~~Q~~~~~~ 176 (221)
T PF05700_consen 98 DVEAWKEALDNAYAQLEHQRLRLENLELLSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIE-EVNRERKRRQEEAGEE 176 (221)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHH
Confidence 5555566666666666553311 124666666666666666666665554 3333333 3333333
Q ss_pred HHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 002835 709 KRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSE 764 (875)
Q Consensus 709 ~~~~le~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~v~~l~~~~~~l~~~l~~ 764 (875)
|+ . |-.+-+..+.....+|+++..|++++..|..+..+
T Consensus 177 L~-~-----------------Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~ 214 (221)
T PF05700_consen 177 LR-Y-----------------LEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAE 214 (221)
T ss_pred HH-H-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 2 44477899999999999999999999999887765
No 194
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=54.87 E-value=60 Score=30.77 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=27.9
Q ss_pred CCcceEEEEecCCC--CceeEEEecchhhHHHHHHHHHh
Q 002835 151 DKKLLTVLFPDGRD--GRAFTLKAESLEDLYDWKTALEN 187 (875)
Q Consensus 151 ~KK~~FvI~~~~~d--grty~fQAdSEeE~~eWI~AI~~ 187 (875)
....||.|+.. .+ -+++.|-|++.++++.|+..|..
T Consensus 77 ~e~~~fTIiy~-~~~~~k~L~lVA~s~~~a~~W~~gL~~ 114 (115)
T cd01248 77 LEERCFTIVYG-TDLNLKSLDLVAPSEEEAKTWVSGLRK 114 (115)
T ss_pred ccccEEEEEEC-CCCCeeEEEEEECCHHHHHHHHHHHhh
Confidence 34467777753 33 56899999999999999999864
No 195
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=54.75 E-value=41 Score=34.21 Aligned_cols=62 Identities=23% Similarity=0.379 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHH
Q 002835 690 LALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLR 759 (875)
Q Consensus 690 ~~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~v~~l~~~~~~l~ 759 (875)
.+|..++..|++||+.-..-...|++-|.--.. .|+ +-++...|+.++..+..|+.++..|+
T Consensus 75 ~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~-------~~t-~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 75 AELDAEIKELREELAELKKEVKSLEAELASLSS-------EPT-NEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCC-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666665555555555544422111 222 24456666666666666666666665
No 196
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=54.38 E-value=68 Score=36.21 Aligned_cols=99 Identities=27% Similarity=0.313 Sum_probs=54.6
Q ss_pred hhcchhHhhh---HHHHHH-------HHHHHHHHHHHHHHHHHHHHH-------HHHhHHHHHHhhhcCCCCCCCCCC-C
Q 002835 668 VKGNEILEAS---LESRKK-------ALHERRLALENDVARLKDQLQ-------KERDKRTAMEAGLGEFNGSFPIPD-T 729 (875)
Q Consensus 668 ~~~~~~~~~~---~~~~~~-------~~~~~r~~le~~v~~l~~ql~-------~e~~~~~~le~~~~~~~~~~~~~~-~ 729 (875)
+|.+|-|||. .|-|.+ .|.+.+..|.+|.+.|.++++ +=++.+++|+.-+..-..-...+. .
T Consensus 127 vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~ 206 (325)
T PF08317_consen 127 VKTYARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESC 206 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 6888888875 234443 455555555555555554443 334445555554422211111122 2
Q ss_pred CChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 002835 730 IDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSEQL 766 (875)
Q Consensus 730 ~~~~~~~~l~~i~~~e~~v~~l~~~~~~l~~~l~~~~ 766 (875)
=+....+.=.+|+...++|..+++++.+|..+|.+-.
T Consensus 207 D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~ 243 (325)
T PF08317_consen 207 DQEELEALRQELAEQKEEIEAKKKELAELQEELEELE 243 (325)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2244455556777777888877777777777776633
No 197
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=53.94 E-value=2.5e+02 Score=37.07 Aligned_cols=80 Identities=25% Similarity=0.377 Sum_probs=52.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhh-hhhhhhHHHHH--
Q 002835 675 EASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGE-IAQAETDIINL-- 751 (875)
Q Consensus 675 ~~~~~~~~~~~~~~r~~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~l~~-i~~~e~~v~~l-- 751 (875)
+..|.+|-..|.-++.-|+-+|+++-.+++....--+.+|+++ .....|.+...+|++ |+.++..|-.|
T Consensus 808 ~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~--------~k~~~d~~~l~~~~~~ie~l~kE~e~~qe 879 (1293)
T KOG0996|consen 808 VRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAV--------LKKVVDKKRLKELEEQIEELKKEVEELQE 879 (1293)
T ss_pred HHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hhccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666667777777777788887776666665566667663 224456677777777 77776666666
Q ss_pred ---H-HHHHHHHHHH
Q 002835 752 ---K-QKAKDLRVQL 762 (875)
Q Consensus 752 ---~-~~~~~l~~~l 762 (875)
+ +++..||..+
T Consensus 880 ~~~Kk~~i~~lq~~i 894 (1293)
T KOG0996|consen 880 KAAKKARIKELQNKI 894 (1293)
T ss_pred hhhHHHHHHHHHHHH
Confidence 3 6666666544
No 198
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=53.87 E-value=2.2e+02 Score=31.11 Aligned_cols=41 Identities=22% Similarity=0.265 Sum_probs=29.6
Q ss_pred chhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002835 671 NEILEASLESRKKALHERRLALENDVARLKDQLQKERDKRT 711 (875)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~ql~~e~~~~~ 711 (875)
++.=+..|++..+.+.+|+.+||.++.+|.+.+++=.+...
T Consensus 87 ~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~ 127 (239)
T COG1579 87 DERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIE 127 (239)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445678888888899999999988888876655444333
No 199
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=53.16 E-value=3.5e+02 Score=34.09 Aligned_cols=31 Identities=19% Similarity=0.258 Sum_probs=12.8
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 002835 736 VELGEIAQAETDIINLKQKAKDLRVQLSEQL 766 (875)
Q Consensus 736 ~~l~~i~~~e~~v~~l~~~~~~l~~~l~~~~ 766 (875)
.|...|+.+|--+.....+-..|..||..+|
T Consensus 485 ~DKq~l~~LEkrL~eE~~~R~~lEkQL~eEr 515 (697)
T PF09726_consen 485 QDKQSLQQLEKRLAEERRQRASLEKQLQEER 515 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444344444444444443
No 200
>PRK11637 AmiB activator; Provisional
Probab=53.04 E-value=1.8e+02 Score=33.96 Aligned_cols=21 Identities=5% Similarity=0.153 Sum_probs=10.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHH
Q 002835 739 GEIAQAETDIINLKQKAKDLR 759 (875)
Q Consensus 739 ~~i~~~e~~v~~l~~~~~~l~ 759 (875)
.+|+.++++..+|..++..|.
T Consensus 233 ~~l~~l~~~~~~L~~~I~~l~ 253 (428)
T PRK11637 233 QQLSELRANESRLRDSIARAE 253 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555544443
No 201
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=52.12 E-value=1.7e+02 Score=33.99 Aligned_cols=92 Identities=18% Similarity=0.223 Sum_probs=58.8
Q ss_pred hhhcchHHHHHHHHHhhhcchhHhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCC
Q 002835 652 RLEDTKSDLQRKIADEVKGNEILEAS---LESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPD 728 (875)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~r~~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~~~~ 728 (875)
|.|..-..|+..|..-+++|+-||.. +|+.-+|-.|-+-.-+++-.----|||.|-.-
T Consensus 282 Kveelar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec~r------------------- 342 (442)
T PF06637_consen 282 KVEELARSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAECAR------------------- 342 (442)
T ss_pred HHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 34555567888899999999998853 33333333333333333332222255555443
Q ss_pred CCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 002835 729 TIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSEQL 766 (875)
Q Consensus 729 ~~~~~~~~~l~~i~~~e~~v~~l~~~~~~l~~~l~~~~ 766 (875)
.++-.|||=|++..+--.|+.++.+..-+|-|.+
T Consensus 343 ----Q~qlaLEEKaaLrkerd~L~keLeekkreleql~ 376 (442)
T PF06637_consen 343 ----QTQLALEEKAALRKERDSLAKELEEKKRELEQLK 376 (442)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477788889888888888888888888877744
No 202
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=51.65 E-value=1.3e+02 Score=32.52 Aligned_cols=43 Identities=14% Similarity=0.319 Sum_probs=35.7
Q ss_pred hcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002835 669 KGNEILEASLESRKKALHERRLALENDVARLKDQLQKERDKRT 711 (875)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~ql~~e~~~~~ 711 (875)
|-...||+...||.++.+.-+..+|+.+..+++.++....-+.
T Consensus 45 ~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v~~~~~~~~ 87 (247)
T PF06705_consen 45 KLEKALEAEVKRRVESNKKLQSKFEEQINNMQERVENQISEKQ 87 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567788888889988888888999999999988888876654
No 203
>cd05135 RasGAP_RASAL Ras GTPase activating-like protein (RASAL) or RASAL1 is a member of the GAP1 family, and a Ca2+ sensor responding in-phase to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. It contains a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. RASAL, like Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), is a cytosolic protein that undergoes a rapid translocation to the plasma membrane in response to receptor-mediated elevation in the concentration of intracellular free Ca2+, a translocation that activates its ability to function as a RasGAP. However, unlike RASAL4, RASAL undergoes an oscillatory translocation to the plasma membrane that occurs in synchrony with repetitive Ca2+ spikes.
Probab=50.85 E-value=5.1 Score=45.45 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=20.8
Q ss_pred cEEEEeeeEeecCC----CCccCceeEEEEEe
Q 002835 83 AVFKSGPLFISSKG----IGWTSWKKRWFILT 110 (875)
Q Consensus 83 ~v~KEGyL~k~kKg----~~~ksWkKRWfVL~ 110 (875)
.+.|+|+++++.++ .++..||||||.|+
T Consensus 302 ~~~~eg~~~~r~~~~~~~~~~~~fkk~~f~l~ 333 (333)
T cd05135 302 VTVKEGYLHKRKTEGPQLLTRFAFKKRYFWLS 333 (333)
T ss_pred chhhhhHhhhccccCCCCcccccccceeeecC
Confidence 37899999987652 23346999999874
No 204
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=50.81 E-value=1.6e+02 Score=30.27 Aligned_cols=98 Identities=17% Similarity=0.289 Sum_probs=53.8
Q ss_pred hhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCC--CCCCCC--CCChhhHHHHhhhhh
Q 002835 668 VKGNEILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNG--SFPIPD--TIDEKTKVELGEIAQ 743 (875)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~--~~~~~~--~~~~~~~~~l~~i~~ 743 (875)
.+-+..||+.|+-..++|.++=-+|++-..+...-.+.-...+..|. .|..| +|++-. ....-.=.+.+.++.
T Consensus 14 ~R~~~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~ri~---~m~~gg~~f~i~~~~~~~~~r~~l~~~~~~ 90 (158)
T PF09486_consen 14 RRRERRLRARLAAQRRALAAAEAELAEQQAEVEAARQRLRAHDARID---AMMTGGAPFSIDEYLALRRYRDVLEERVRA 90 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHcCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666554444444433333333333333333233333332 33332 333222 222233356788999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhh
Q 002835 744 AETDIINLKQKAKDLRVQLSEQLEK 768 (875)
Q Consensus 744 ~e~~v~~l~~~~~~l~~~l~~~~~~ 768 (875)
+|+.+..|.+.|..-+.+|...+..
T Consensus 91 ~e~~~a~l~~~l~~~~~~ia~~~ra 115 (158)
T PF09486_consen 91 AEAELAALRQALRAAEDEIAATRRA 115 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999876553
No 205
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=50.74 E-value=43 Score=45.59 Aligned_cols=100 Identities=22% Similarity=0.230 Sum_probs=68.5
Q ss_pred hHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCC-CCCCCCCCChhhHHHHhhhhhhhhHHHHH
Q 002835 673 ILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNG-SFPIPDTIDEKTKVELGEIAQAETDIINL 751 (875)
Q Consensus 673 ~~~~~~~~~~~~~~~~r~~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~-~~~~~~~~~~~~~~~l~~i~~~e~~v~~l 751 (875)
+++-+...+|+.+..+=..|+.++.+|++-||++..=..-|..-++..-- ...---.+-......+++++.++..++.|
T Consensus 791 ~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~l 870 (1822)
T KOG4674|consen 791 ELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKL 870 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666777777889999999999999987655544444332111 11111233345677889999999999999
Q ss_pred HHHHHHHHHHHHH--HhhhccCC
Q 002835 752 KQKAKDLRVQLSE--QLEKNDGF 772 (875)
Q Consensus 752 ~~~~~~l~~~l~~--~~~~~~~~ 772 (875)
++++.+|..+|-- .|.+++++
T Consensus 871 e~k~~eL~k~l~~~~~~~~~l~~ 893 (1822)
T KOG4674|consen 871 EIKLSELEKRLKSAKTQLLNLDS 893 (1822)
T ss_pred HHHHHHHHHHHHHhHHHHhhccc
Confidence 9999999988764 45556665
No 206
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=50.49 E-value=39 Score=29.42 Aligned_cols=62 Identities=24% Similarity=0.372 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 002835 694 NDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSEQLEK 768 (875)
Q Consensus 694 ~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~v~~l~~~~~~l~~~l~~~~~~ 768 (875)
|-+..|+.+|.+|+.++...|+-+..- +-+.+. -.+.++.-+....+++..|+.+|..-...
T Consensus 1 q~i~~L~~~i~~E~ki~~Gae~m~~~~--------~t~~~~-----~~~~~~~~l~~s~~kI~~L~~~L~~l~~~ 62 (70)
T PF02185_consen 1 QRIEELQKKIDKELKIKEGAENMLQAY--------STDKKK-----VLSEAESQLRESNQKIELLREQLEKLQQR 62 (70)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHH--------CCHHCH------HHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH--------ccCcHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457889999999999999988876541 011111 34566777777888888888888764433
No 207
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=49.20 E-value=2.4e+02 Score=31.12 Aligned_cols=66 Identities=36% Similarity=0.545 Sum_probs=53.5
Q ss_pred hhhhhhhhcchHHHHHHHHHhhhcchhHhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHH
Q 002835 647 EVEIQRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHE---RRLALENDVARLKDQLQKERDKRTA 712 (875)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~r~~le~~v~~l~~ql~~e~~~~~~ 712 (875)
++.+..|...-.+++.|+.++.+.+..|+.-+..-++.+++ .|..||..+..|+++|.--+..|..
T Consensus 74 ~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~hee 142 (312)
T PF00038_consen 74 ELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEE 142 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhh
Confidence 45566777777899999999999999999988888876654 5666999999999999876666654
No 208
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=48.98 E-value=1.2e+02 Score=30.97 Aligned_cols=29 Identities=17% Similarity=0.323 Sum_probs=23.8
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 002835 736 VELGEIAQAETDIINLKQKAKDLRVQLSE 764 (875)
Q Consensus 736 ~~l~~i~~~e~~v~~l~~~~~~l~~~l~~ 764 (875)
.-.+++..++..|..|+.++..|...+.|
T Consensus 149 ~~~~~~~~l~~~i~~l~rk~~~l~~~i~~ 177 (177)
T PF13870_consen 149 KTKEEVEELRKEIKELERKVEILEMRIKQ 177 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 45667778899999999999999887754
No 209
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=48.51 E-value=2e+02 Score=32.64 Aligned_cols=31 Identities=23% Similarity=0.075 Sum_probs=19.4
Q ss_pred hhhhhhhhhcchHHHHHHHHHhhhcchhHhh
Q 002835 646 NEVEIQRLEDTKSDLQRKIADEVKGNEILEA 676 (875)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (875)
.+.+...++.++.|.+.-..++.+-|.++-.
T Consensus 146 k~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~ 176 (312)
T smart00787 146 KEGLDENLEGLKEDYKLLMKELELLNSIKPK 176 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666777776666666666666544
No 210
>PRK11519 tyrosine kinase; Provisional
Probab=48.40 E-value=1.6e+02 Score=36.97 Aligned_cols=90 Identities=13% Similarity=0.234 Sum_probs=58.3
Q ss_pred HHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHH
Q 002835 660 LQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQLQK-ERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVEL 738 (875)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~ql~~-e~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~l 738 (875)
+-.+|+.++ .++-++.++++|.++...-..-|++.+..|+.+|.+ |..|...-.. .+ ...++..+++.|
T Consensus 241 ~Aa~iaN~l-~~~Yi~~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~-----~~----~vd~~~ea~~~l 310 (719)
T PRK11519 241 QIRDILNSI-TRNYLEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQD-----KD----SVDLPLEAKAVL 310 (719)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cC----CCCchHHHHHHH
Confidence 334455444 556666777776666666666688888888888864 5555443322 11 123567788899
Q ss_pred hhhhhhhhHHHHHHHHHHHHH
Q 002835 739 GEIAQAETDIINLKQKAKDLR 759 (875)
Q Consensus 739 ~~i~~~e~~v~~l~~~~~~l~ 759 (875)
+.++.+++.+..|+++..+|.
T Consensus 311 ~~~~~l~~ql~~l~~~~~~l~ 331 (719)
T PRK11519 311 DSMVNIDAQLNELTFKEAEIS 331 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 998888888877777766653
No 211
>PHA02562 46 endonuclease subunit; Provisional
Probab=48.00 E-value=1.3e+02 Score=36.13 Aligned_cols=37 Identities=16% Similarity=0.167 Sum_probs=20.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcchh
Q 002835 741 IAQAETDIINLKQKAKDLRVQLSEQLEKNDGFVGDSSNQL 780 (875)
Q Consensus 741 i~~~e~~v~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 780 (875)
+..++.++.+++.++..+...+..-. ....|..|.+.
T Consensus 257 L~~l~~~~~~~~~~l~~~~~~~~~~~---~~~~Cp~C~~~ 293 (562)
T PHA02562 257 LNKLNTAAAKIKSKIEQFQKVIKMYE---KGGVCPTCTQQ 293 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCCCCCc
Confidence 34455555555555555555554432 34577777664
No 212
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=47.63 E-value=1.3e+02 Score=29.90 Aligned_cols=80 Identities=20% Similarity=0.296 Sum_probs=45.7
Q ss_pred hhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhh
Q 002835 667 EVKGNEILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAET 746 (875)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~ 746 (875)
+..+=..+++.|++..+++......+++++..++++|+.+.. +++...+..++ ..+..
T Consensus 30 ~~~~~k~~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~~~~~--------------------~ls~~~~~~~~--~~l~~ 87 (158)
T PF03938_consen 30 ESPAGKDAQAKLQEKFKALQKELQAKQKELQKLQQKLQSQKA--------------------TLSEEERQKRQ--QELQQ 87 (158)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS------------------------SSHHHHHHH--HHHHH
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------------------ccchhHHHHHH--HHHHH
Confidence 333444567777777777777777777777777777777644 23333332221 12233
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 002835 747 DIINLKQKAKDLRVQLSEQLEK 768 (875)
Q Consensus 747 ~v~~l~~~~~~l~~~l~~~~~~ 768 (875)
-+..|++....+..+|.++++.
T Consensus 88 ~~~~l~~~~~~~~~~l~~~~~~ 109 (158)
T PF03938_consen 88 KEQELQQFQQQAQQQLQQEEQE 109 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344666666666677766665
No 213
>PRK12704 phosphodiesterase; Provisional
Probab=46.70 E-value=1.5e+02 Score=35.85 Aligned_cols=36 Identities=17% Similarity=0.368 Sum_probs=25.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 002835 740 EIAQAETDIINLKQKAKDLRVQLSEQLEKNDGFVGD 775 (875)
Q Consensus 740 ~i~~~e~~v~~l~~~~~~l~~~l~~~~~~~~~~~~~ 775 (875)
++...+..+.++++++..+..+..++.+.-.|-..+
T Consensus 118 ~Le~re~eLe~~~~~~~~~~~~~~~~l~~~a~lt~~ 153 (520)
T PRK12704 118 ELEQKQQELEKKEEELEELIEEQLQELERISGLTAE 153 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 455666677777777777777777777777776655
No 214
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=46.63 E-value=2.4e+02 Score=28.04 Aligned_cols=26 Identities=15% Similarity=0.175 Sum_probs=10.4
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHH
Q 002835 736 VELGEIAQAETDIINLKQKAKDLRVQ 761 (875)
Q Consensus 736 ~~l~~i~~~e~~v~~l~~~~~~l~~~ 761 (875)
++-..+..+++.+..++.++.-|...
T Consensus 98 ~l~~~~~~~~~~~k~~kee~~klk~~ 123 (151)
T PF11559_consen 98 QLQKQLKSLEAKLKQEKEELQKLKNQ 123 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444443333
No 215
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=46.47 E-value=1.3e+02 Score=40.18 Aligned_cols=74 Identities=8% Similarity=0.245 Sum_probs=41.9
Q ss_pred CccCceeEEEEEeCCeEEE-ecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecCCCCceeEEEecc--
Q 002835 98 GWTSWKKRWFILTHTSLVF-FRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAES-- 174 (875)
Q Consensus 98 ~~ksWkKRWfVL~~~sL~y-YKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~~dgrty~fQAdS-- 174 (875)
+.+++-.+||=.....++| |....+. ++.+.+... ..++.-+|.|+- ..-...||+....
T Consensus 54 ~rksF~~yYLP~~nSyIIYEY~R~~G~-----------~~~vvl~~~-----s~g~~V~YRFId-~~y~~e~fi~~~~~~ 116 (1201)
T PF12128_consen 54 GRKSFDDYYLPYSNSYIIYEYQREDGQ-----------LCCVVLSRK-----SDGRGVQYRFID-APYQRELFIDENNGD 116 (1201)
T ss_pred hhhhHHHHcCCCCCceEEEeeeccCCc-----------eeEEEEeec-----CCCCceeeeecc-CccchhhcccccCcc
Confidence 3578888898887777777 6644321 111222210 122344566553 2223567666665
Q ss_pred ---hhhHHHHHHHHHhh
Q 002835 175 ---LEDLYDWKTALENA 188 (875)
Q Consensus 175 ---EeE~~eWI~AI~~a 188 (875)
...+.+|+..+...
T Consensus 117 ~~~~~~~~e~~r~~~~~ 133 (1201)
T PF12128_consen 117 LVQALSMWELIRELRRK 133 (1201)
T ss_pred ccccccHHHHHHHHHhC
Confidence 46788888888764
No 216
>cd01255 PH_TIAM TIAM Pleckstrin homology (PH) domain. TIAM Pleckstrin homology (PH) domain. TIAM (T-cell invasion and metastasis) is a guanine nucleotide exchange factor specific for RAC1. It consists of an N-terminal PH domain followed by Raf-like ras binding domain(RDB), a PDZ domain, a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. This subfamily contains the alignment of the PH domain that follows the DH domain.
Probab=45.79 E-value=1e+02 Score=31.06 Aligned_cols=41 Identities=20% Similarity=0.335 Sum_probs=32.5
Q ss_pred cCCcceEEEEe-----cCCCCceeEEEecchhhHHHHHHHHHhhhc
Q 002835 150 ADKKLLTVLFP-----DGRDGRAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 150 ~~KK~~FvI~~-----~~~dgrty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
.+..+.++|+. .+++.++|.||+.+.+-.+..+.+|++.+.
T Consensus 110 ~e~~~vwEliH~kSe~egRpE~vfqLCcS~~E~k~~flK~Irsilr 155 (160)
T cd01255 110 MESNFLWELIHLKSELEGRPEKVFVLCCSTAESRNAFLKTIRSILR 155 (160)
T ss_pred cccceEEEEEeecccccCCCcceEEEecCCHHHHHHHHHHHHHHHH
Confidence 35666676664 244678999999999999999999999873
No 217
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=45.77 E-value=1.6e+02 Score=31.14 Aligned_cols=85 Identities=25% Similarity=0.317 Sum_probs=55.5
Q ss_pred CchhhhhhhhhcchHHHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCC
Q 002835 644 SDNEVEIQRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGS 723 (875)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~ 723 (875)
.+.|.--.+||+-|..+...|+.--..=+-||+-|..+ .+=++.|.--|+|.++|.
T Consensus 101 A~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~--------~~Q~~~va~~Q~q~r~ea---------------- 156 (192)
T PF11180_consen 101 ADVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIA--------RQQQQQVAARQQQARQEA---------------- 156 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH----------------
Confidence 34566667788999988888875444444566666543 334677777777777764
Q ss_pred CCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 002835 724 FPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLS 763 (875)
Q Consensus 724 ~~~~~~~~~~~~~~l~~i~~~e~~v~~l~~~~~~l~~~l~ 763 (875)
+++=.+-..+.+-+..|.++|..|+.|.+
T Consensus 157 -----------~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~ 185 (192)
T PF11180_consen 157 -----------QALEAERRAAQAQLRQLQRQVRQLQRQAN 185 (192)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 23333455666677777777777766654
No 218
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=45.70 E-value=2.5e+02 Score=31.82 Aligned_cols=69 Identities=23% Similarity=0.281 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 002835 696 VARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSEQ 765 (875)
Q Consensus 696 v~~l~~ql~~e~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~v~~l~~~~~~l~~~l~~~ 765 (875)
|-||++|.-+=-.=...|+.-|..+.+..++|..+-. ....=.....+.+.|..|.++|.-|..||-..
T Consensus 180 vN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~-~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~s 248 (310)
T PF09755_consen 180 VNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVN-VSEENDTAERLSSHIRSLRQEVSRLRQQLAAS 248 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHh-hcccCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777544222233455555543333333322100 00011112336677778888888777777543
No 219
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=45.69 E-value=1.6e+02 Score=36.46 Aligned_cols=102 Identities=24% Similarity=0.320 Sum_probs=57.2
Q ss_pred hhhhhcchHHHHHHHHHhhhcchhHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCC
Q 002835 650 IQRLEDTKSDLQRKIADEVKGNEILE--ASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIP 727 (875)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~r~~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~~~ 727 (875)
+++|...-.++..+-.++...+..+. ..|+++-+.+....-.++++.+.++.++..=..-...|+..+....|
T Consensus 184 ~~~L~~dl~~~~~~~~~~~~~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG----- 258 (650)
T TIGR03185 184 IDRLAGDLTNVLRRRKKSELPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGG----- 258 (650)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----
Confidence 55666555566667777666544332 12333334444455556666666666665544444444444433323
Q ss_pred CCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 002835 728 DTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSE 764 (875)
Q Consensus 728 ~~~~~~~~~~l~~i~~~e~~v~~l~~~~~~l~~~l~~ 764 (875)
..+++...+|+.+..++++..+...+|.+
T Consensus 259 --------~~~~~r~~Le~ei~~le~e~~e~~~~l~~ 287 (650)
T TIGR03185 259 --------DLFEEREQLERQLKEIEAARKANRAQLRE 287 (650)
T ss_pred --------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666777777777777777776665
No 220
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=45.59 E-value=1.4e+02 Score=36.11 Aligned_cols=36 Identities=19% Similarity=0.404 Sum_probs=22.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 002835 740 EIAQAETDIINLKQKAKDLRVQLSEQLEKNDGFVGD 775 (875)
Q Consensus 740 ~i~~~e~~v~~l~~~~~~l~~~l~~~~~~~~~~~~~ 775 (875)
+|...+..+.+++++...+..+..++.+.-.|-+.+
T Consensus 112 ~L~~re~eLee~~~e~~~~~~~~~~~le~~a~lt~~ 147 (514)
T TIGR03319 112 ELSNKEKNLDEKEEELEELIAEQREELERISGLTQE 147 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 455555666666666666666666677776665554
No 221
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=45.47 E-value=86 Score=27.15 Aligned_cols=29 Identities=28% Similarity=0.554 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002835 677 SLESRKKALHERRLALENDVARLKDQLQK 705 (875)
Q Consensus 677 ~~~~~~~~~~~~r~~le~~v~~l~~ql~~ 705 (875)
.+++|=++-..|..+|+++|.+|++++.+
T Consensus 29 ~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 29 AFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777788999999999999999999865
No 222
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.46 E-value=1e+02 Score=38.68 Aligned_cols=31 Identities=19% Similarity=0.174 Sum_probs=18.0
Q ss_pred hhhhhhhHHHHHHH---------HHHHHHHHHHHHhhhcc
Q 002835 740 EIAQAETDIINLKQ---------KAKDLRVQLSEQLEKND 770 (875)
Q Consensus 740 ~i~~~e~~v~~l~~---------~~~~l~~~l~~~~~~~~ 770 (875)
+|-..||+-..||. ++.+|..|-+.|-++..
T Consensus 394 eie~rEaar~ElEkqRqlewErar~qem~~Qk~reqe~iv 433 (1118)
T KOG1029|consen 394 EIERREAAREELEKQRQLEWERARRQEMLNQKNREQEWIV 433 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 45556666555543 34566666666666554
No 223
>PF11083 Streptin-Immun: Lantibiotic streptin immunity protein; InterPro: IPR021112 Streptococcal species produce a lantibiotic, streptin, in a similar manner to the production of nisin and subtilin by other lactic acid bacteria, in order to compete against competing bacteria within the environment []. The immunity protein protects the bacterium from destruction by its own lantibiotic. In general, there is little homology between the immunity proteins of different genera of bacteria.
Probab=45.13 E-value=74 Score=30.07 Aligned_cols=60 Identities=32% Similarity=0.276 Sum_probs=48.5
Q ss_pred hhhhhcchHHHHHHHHHhhhcchhHh----hhHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhH
Q 002835 650 IQRLEDTKSDLQRKIADEVKGNEILE----ASLESRKKALHERR----------LALENDVARLKDQLQKERDK 709 (875)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~r----------~~le~~v~~l~~ql~~e~~~ 709 (875)
|.-++.+-+++|.|||.==|-=++|= ++.|.||-|.+++= -++|.|+..||+||-.+++-
T Consensus 1 iA~~di~l~~~~EkiatLNKmAEvLinlks~~~esrklaky~~sKLNltesitle~ve~Ei~~lQ~qL~~~lde 74 (99)
T PF11083_consen 1 IAELDIKLTQTQEKIATLNKMAEVLINLKSDDPESRKLAKYDFSKLNLTESITLEQVEKEIRELQNQLGLYLDE 74 (99)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44577888999999987666666776 88999999888763 35899999999999888764
No 224
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=45.08 E-value=1.3e+02 Score=38.45 Aligned_cols=114 Identities=21% Similarity=0.344 Sum_probs=69.6
Q ss_pred hhhcchHHHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHH------HHHHHHH-----HHhHHHHHHhhhcCC
Q 002835 652 RLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVAR------LKDQLQK-----ERDKRTAMEAGLGEF 720 (875)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~------l~~ql~~-----e~~~~~~le~~~~~~ 720 (875)
-+|.+-.|||.+|.- +=|-...=-.|-.+|=.|.+|=-.||..|.. ++|||++ |.|||.-|+-+
T Consensus 428 ~aEs~iadlkEQVDA-AlGAE~MV~qLtdknlnlEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~---- 502 (1243)
T KOG0971|consen 428 QAESTIADLKEQVDA-ALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMA---- 502 (1243)
T ss_pred HHHHHHHHHHHHHHH-hhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 344445555555521 1121222223445555666666667766654 5788865 78888866653
Q ss_pred CCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 002835 721 NGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSEQLEKNDGFV 773 (875)
Q Consensus 721 ~~~~~~~~~~~~~~~~~l~~i~~~e~~v~~l~~~~~~l~~~l~~~~~~~~~~~ 773 (875)
+|.. .-+-....+..+-|.-.-.+|.|..+-|.-|+.||..++.++..+-
T Consensus 503 ~g~~---kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq~~Sse 552 (1243)
T KOG0971|consen 503 KGAR---KELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQQESSE 552 (1243)
T ss_pred hhHH---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 3322 2233344556666666677888999999999999998888776654
No 225
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=44.72 E-value=57 Score=28.74 Aligned_cols=25 Identities=40% Similarity=0.638 Sum_probs=21.2
Q ss_pred HHHHHHHHhhhcchhHhhhHHHHHH
Q 002835 659 DLQRKIADEVKGNEILEASLESRKK 683 (875)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (875)
.|+.+|-+=.--|..|+++||.||+
T Consensus 2 rL~~~ie~L~~~n~~L~~~le~~k~ 26 (67)
T PF10506_consen 2 RLKRRIEELKSQNEMLSSTLEERKQ 26 (67)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777887777789999999999998
No 226
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=43.88 E-value=1.4e+02 Score=30.63 Aligned_cols=76 Identities=26% Similarity=0.377 Sum_probs=49.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHH
Q 002835 676 ASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKA 755 (875)
Q Consensus 676 ~~~~~~~~~~~~~r~~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~v~~l~~~~ 755 (875)
+-|.+|...+.++ ..+++++.+.+.+|.+-+ .+ +.+-+.++..+-++|..+|..+..++.++
T Consensus 107 ~~l~~R~~~~~~~-~~~~~~l~~k~~~~~kl~-------~~----------~~~~~~ki~~l~~~i~~~e~~~~~~~~~~ 168 (218)
T cd07596 107 ETLDDRADALLTL-QSLKKDLASKKAQLEKLK-------AA----------PGIKPAKVEELEEELEEAESALEEARKRY 168 (218)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh-------hc----------CCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555544 445555555555554432 21 11456688888888999999999999888
Q ss_pred HHHHHHHHHHhhhc
Q 002835 756 KDLRVQLSEQLEKN 769 (875)
Q Consensus 756 ~~l~~~l~~~~~~~ 769 (875)
......+..+..+-
T Consensus 169 ~~i~~~~~~El~~f 182 (218)
T cd07596 169 EEISERLKEELKRF 182 (218)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888887776543
No 227
>TIGR02890 spore_yteA sporulation protein, yteA family. Members of this predicted regulatory protein are found only in endospore-forming members of the Firmicutes group of bacteria, and in nearly every such species; Clostridium perfringens seems to be an exception. The member from Bacillus subtilis, the model system for the study of the sporulation program, has been designated both yteA and yzwB. Some (but not all) members of this family show a strong sequence match to PFAM family pfam01258 the C4-type zinc finger protein, DksA/TraR family, but only one of the four key Cys residues is conserved. All members of this protein family share an additional C-terminal domain. The function of proteins in this family is unknown. YteA was detected in mature spores of Bacillus subtilis by Kuwana, et al., and appears to be expressed under control of sigma-K.
Probab=43.47 E-value=2.1e+02 Score=29.35 Aligned_cols=91 Identities=12% Similarity=0.090 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCC--CCCCCChhhHHHHhhhhhhhhHHHHHHHHHH
Q 002835 679 ESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFP--IPDTIDEKTKVELGEIAQAETDIINLKQKAK 756 (875)
Q Consensus 679 ~~~~~~~~~~r~~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~--~~~~~~~~~~~~l~~i~~~e~~v~~l~~~~~ 756 (875)
+.=|+-|.++|..|...+..+.++++.+.. ..+.+.++ .....|.-+...-.++ ..+-..+..+++.
T Consensus 4 ~~~r~~L~~~r~~L~~~i~~~~~~~~~~~~---------~~~~~~~s~~~~d~~D~a~~~~e~~~--~~~l~~~~~~~L~ 72 (159)
T TIGR02890 4 AELKNMLLQEKKELEQRLKQMNKEDGIASQ---------RESTGELSQYDNHPADLATELYEREK--DIALREHEERELR 72 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---------hcccccccccCCCcchHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 344555666666666666665555532211 11122221 1233443333332333 3344455667777
Q ss_pred HHHHHHHHHhhhccCCCCCCcchhc
Q 002835 757 DLRVQLSEQLEKNDGFVGDSSNQLH 781 (875)
Q Consensus 757 ~l~~~l~~~~~~~~~~~~~~~~~~~ 781 (875)
.+..-|..-....|| .|..|....
T Consensus 73 ~Ie~AL~Ri~~G~YG-~Ce~CGe~I 96 (159)
T TIGR02890 73 EIEHALQKIENGTYG-ICEVCGKPI 96 (159)
T ss_pred HHHHHHHHHhCCCCC-eecccCCcc
Confidence 888888877778888 788888753
No 228
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=42.77 E-value=3.9e+02 Score=28.21 Aligned_cols=114 Identities=22% Similarity=0.334 Sum_probs=66.5
Q ss_pred hhhhhhhcchHHHHHHHHHhhhcchhHhhhHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 002835 648 VEIQRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHER----------RLALENDVARLKDQLQKERDKRTAMEAGL 717 (875)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------r~~le~~v~~l~~ql~~e~~~~~~le~~~ 717 (875)
.-|-+|.+.=.+||.+|..=.++|..|..---|..+||..+ -..-..||.-|+++|.+=.+--.+++.=+
T Consensus 12 ~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~kl 91 (194)
T PF15619_consen 12 HKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKL 91 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777888888888888888888888877666666677555 33456777777777766222222222211
Q ss_pred cCCCC-------------CCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 002835 718 GEFNG-------------SFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQL 762 (875)
Q Consensus 718 ~~~~~-------------~~~~~~~~~~~~~~~l~~i~~~e~~v~~l~~~~~~l~~~l 762 (875)
..-.. .++.--.|++ --++-..+..+++.+..-+.++..|..+|
T Consensus 92 k~~~~el~k~~~~l~~L~~L~~dknL~e-ReeL~~kL~~~~~~l~~~~~ki~~Lek~l 148 (194)
T PF15619_consen 92 KDKDEELLKTKDELKHLKKLSEDKNLAE-REELQRKLSQLEQKLQEKEKKIQELEKQL 148 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11000 1112223444 23444566667776666677777766655
No 229
>KOG3523 consensus Putative guanine nucleotide exchange factor TIM [Signal transduction mechanisms]
Probab=42.57 E-value=42 Score=40.72 Aligned_cols=88 Identities=20% Similarity=0.203 Sum_probs=48.5
Q ss_pred ccCceeEEEEEeCCeEEEecCCCCCCCCC---CccceeecCCee--ecCCCceeeecCCcceEEEEecC-CCC--ceeEE
Q 002835 99 WTSWKKRWFILTHTSLVFFRSDPSAIPQK---GSEVNLTLGGID--LNNSGSVVVKADKKLLTVLFPDG-RDG--RAFTL 170 (875)
Q Consensus 99 ~ksWkKRWfVL~~~sL~yYKd~k~~~p~~---g~e~~i~L~~~~--l~~s~sv~~~~~KK~~FvI~~~~-~dg--rty~f 170 (875)
.+..+..|+-|-.+.|.+.|......... .+--.+.+..|. +...+--......++.|.+++-. .+| .+|+|
T Consensus 496 k~~~~~vylfLFnD~Llitk~k~~~~f~V~Dya~r~~l~ve~~e~~~~lp~~~~~~~~~~hlF~ltLl~N~~~~~~e~lL 575 (695)
T KOG3523|consen 496 KRLSKTVYLFLFNDLLLITKKKSEGSFQVFDYAPRSLLQVEKCEPELKLPGGANSLSSRPHLFLLTLLSNHQGRQTELLL 575 (695)
T ss_pred ccccceeeeeeecceeeEeeecCCCceEEeeccchhhhhhhhcCcccCCCCCCcccccccceEEEehhhccCCCceeeee
Confidence 34456778888888888888665432110 000001112222 00000000012345667776532 233 38999
Q ss_pred EecchhhHHHHHHHHH
Q 002835 171 KAESLEDLYDWKTALE 186 (875)
Q Consensus 171 QAdSEeE~~eWI~AI~ 186 (875)
+|+++.|+..||.||.
T Consensus 576 ~a~s~Sd~~RWi~Al~ 591 (695)
T KOG3523|consen 576 SAESQSDRQRWISALR 591 (695)
T ss_pred cCCchHHHHHHHHhcC
Confidence 9999999999999986
No 230
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=42.24 E-value=66 Score=32.88 Aligned_cols=66 Identities=27% Similarity=0.309 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 002835 691 ALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQL 762 (875)
Q Consensus 691 ~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~v~~l~~~~~~l~~~l 762 (875)
.|..|+.+|.-|.+.|+.+|...|.-+..- -..+...+|+++.-|+.+++.+..|+.++..++.|.
T Consensus 54 ~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~------Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~ 119 (158)
T PF09744_consen 54 LLREDNEQLETQYEREKELRKQAEEELLEL------EDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQS 119 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 355577777777777887777666533210 022344567777777777777777777777766654
No 231
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=42.06 E-value=32 Score=37.63 Aligned_cols=10 Identities=10% Similarity=0.185 Sum_probs=4.6
Q ss_pred HHHHHHHHhh
Q 002835 179 YDWKTALENA 188 (875)
Q Consensus 179 ~eWI~AI~~a 188 (875)
..||-.=+.-
T Consensus 104 EawvCHgrkC 113 (314)
T PF06524_consen 104 EAWVCHGRKC 113 (314)
T ss_pred hhheeccccc
Confidence 3465444433
No 232
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=41.62 E-value=4.2e+02 Score=28.89 Aligned_cols=39 Identities=23% Similarity=0.348 Sum_probs=31.1
Q ss_pred CCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 002835 729 TIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSEQLE 767 (875)
Q Consensus 729 ~~~~~~~~~l~~i~~~e~~v~~l~~~~~~l~~~l~~~~~ 767 (875)
.|..+..+.-.+|+.++..+.+.+.++..|+.+|...|.
T Consensus 79 ~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~ 117 (246)
T PF00769_consen 79 QLEQELREAEAEIARLEEESERKEEEAEELQEELEEARE 117 (246)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456688888889999999998888899999888877665
No 233
>PRK02224 chromosome segregation protein; Provisional
Probab=41.49 E-value=2e+02 Score=36.72 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=14.7
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 002835 737 ELGEIAQAETDIINLKQKAKDLRVQLS 763 (875)
Q Consensus 737 ~l~~i~~~e~~v~~l~~~~~~l~~~l~ 763 (875)
.|+++..++.++.+++..+.+|...+.
T Consensus 590 ~le~~~~~~~~i~~~~~~~~~~~~~~~ 616 (880)
T PRK02224 590 SLERIRTLLAAIADAEDEIERLREKRE 616 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555553
No 234
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=40.92 E-value=3.1e+02 Score=28.92 Aligned_cols=118 Identities=16% Similarity=0.247 Sum_probs=72.6
Q ss_pred hhhhhhhhcchHHHHHHHHHhhhcchhHhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCC
Q 002835 647 EVEIQRLEDTKSDLQRKIADEVKGNEILEASLESRKK---ALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGS 723 (875)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~r~~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~ 723 (875)
+.+|.+.|.+.++|-..|+.=.-+=..|+..|-+=+. ++...--..+.++-+++++|+. |....+ ...
T Consensus 46 ~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~---L~~L~~------dkn 116 (194)
T PF15619_consen 46 EKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKH---LKKLSE------DKN 116 (194)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH------cCC
Confidence 5689999999999998886444443456666644222 3333334455555555555554 222111 134
Q ss_pred CCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 002835 724 FPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSEQLEKNDGFV 773 (875)
Q Consensus 724 ~~~~~~~~~~~~~~l~~i~~~e~~v~~l~~~~~~l~~~l~~~~~~~~~~~ 773 (875)
+..-..+-.+.-..=..+...+-.|..|+.++.-...-..+|...-....
T Consensus 117 L~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~ 166 (194)
T PF15619_consen 117 LAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKH 166 (194)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44445566666777778888999999999999877665555544433333
No 235
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=40.90 E-value=22 Score=44.44 Aligned_cols=81 Identities=20% Similarity=0.352 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCC----CCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHH
Q 002835 684 ALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFP----IPDTIDEKTKVELGEIAQAETDIINLKQKAKDLR 759 (875)
Q Consensus 684 ~~~~~r~~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~----~~~~~~~~~~~~l~~i~~~e~~v~~l~~~~~~l~ 759 (875)
.++.++..||..|..|.+.|..-......++..+........ ...........+-.+|..+|..+.+|++++..|.
T Consensus 451 ~~~~~~~ele~~l~~l~~~l~~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le 530 (722)
T PF05557_consen 451 LVDEYKAELEAQLEELEEELSEQKQRNETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELE 530 (722)
T ss_dssp -------------------------------------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666667777777777665555555555555533222221 1233445566677899999999999999999999
Q ss_pred HHHHH
Q 002835 760 VQLSE 764 (875)
Q Consensus 760 ~~l~~ 764 (875)
.+|.+
T Consensus 531 ~~l~~ 535 (722)
T PF05557_consen 531 SELEK 535 (722)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99975
No 236
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=40.51 E-value=2.9e+02 Score=33.03 Aligned_cols=39 Identities=26% Similarity=0.221 Sum_probs=33.7
Q ss_pred CCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 002835 728 DTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSEQL 766 (875)
Q Consensus 728 ~~~~~~~~~~l~~i~~~e~~v~~l~~~~~~l~~~l~~~~ 766 (875)
..-|.+...+=+||...|..+.-|+.+.++||.||..|+
T Consensus 326 ~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~ 364 (622)
T COG5185 326 QEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQG 364 (622)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcC
Confidence 335667788889999999999999999999999997764
No 237
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=40.45 E-value=2.3e+02 Score=39.60 Aligned_cols=80 Identities=23% Similarity=0.430 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCC-CCCC--hhhHHHH-hhhhhhhhHHHHHHHHHHHHH
Q 002835 684 ALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIP-DTID--EKTKVEL-GEIAQAETDIINLKQKAKDLR 759 (875)
Q Consensus 684 ~~~~~r~~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~~~-~~~~--~~~~~~l-~~i~~~e~~v~~l~~~~~~l~ 759 (875)
.|...+..||++|..|..-|.+|...|.=+|.....--|.+... ..+. ..-+++| ...+-.|..+..|..++.+++
T Consensus 1010 ~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~ 1089 (1930)
T KOG0161|consen 1010 SLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQ 1089 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 45566778999999999999999999988885443333333211 1111 1122222 233445555555555555555
Q ss_pred HHHH
Q 002835 760 VQLS 763 (875)
Q Consensus 760 ~~l~ 763 (875)
..+.
T Consensus 1090 ~~~~ 1093 (1930)
T KOG0161|consen 1090 AEVA 1093 (1930)
T ss_pred HHHH
Confidence 4443
No 238
>PF07321 YscO: Type III secretion protein YscO; InterPro: IPR009929 This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis [].
Probab=40.33 E-value=2.7e+02 Score=28.33 Aligned_cols=74 Identities=18% Similarity=0.189 Sum_probs=58.5
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHH
Q 002835 674 LEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQ 753 (875)
Q Consensus 674 ~~~~~~~~~~~~~~~r~~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~v~~l~~ 753 (875)
..+.+++..++|..||.-...+-.||=..++.-.=....|+. ....|+.+...+.+|++
T Consensus 30 a~~~~~~a~~~l~dyr~wr~~ee~rly~~~~~~~v~~kele~---------------------~~~qv~~Lr~~e~~le~ 88 (152)
T PF07321_consen 30 ARAALQQAEQELADYRQWRQREEERLYAEIQGKVVSLKELEK---------------------WQQQVASLREREAELEQ 88 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHH---------------------HHHHHHHHHHhHHHHHH
Confidence 345677777889999999999888888888776655555543 34678888888889999
Q ss_pred HHHHHHHHHHHHhhh
Q 002835 754 KAKDLRVQLSEQLEK 768 (875)
Q Consensus 754 ~~~~l~~~l~~~~~~ 768 (875)
.+.++..++.++++.
T Consensus 89 ~~~~a~~~~~~e~~~ 103 (152)
T PF07321_consen 89 QLAEAEEQLEQERQA 103 (152)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999888765
No 239
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=40.29 E-value=1.8e+02 Score=34.93 Aligned_cols=35 Identities=23% Similarity=0.249 Sum_probs=25.9
Q ss_pred CChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 002835 730 IDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSE 764 (875)
Q Consensus 730 ~~~~~~~~l~~i~~~e~~v~~l~~~~~~l~~~l~~ 764 (875)
+.....++..++..++..+..|++++..|+.+|..
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 170 (525)
T TIGR02231 136 NGSEIERLLTEDREAERRIRELEKQLSELQNELNA 170 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455666677778888888888888888888755
No 240
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=39.96 E-value=2.1e+02 Score=39.93 Aligned_cols=75 Identities=23% Similarity=0.368 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 002835 684 ALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLS 763 (875)
Q Consensus 684 ~~~~~r~~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~v~~l~~~~~~l~~~l~ 763 (875)
++..-..+|+..+..|+.||++|..-+.+|++++.. +-.....+.+.+--...+..+|..++..+..++.
T Consensus 1291 ~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~----------l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~ 1360 (1930)
T KOG0161|consen 1291 ALSRDKQALESQLEELKRQLEEETREKSALENALRQ----------LEHELDLLREQLEEEQEAKNELERKLSKANAELA 1360 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666666666666666666665533 1222333344444444444445555555555444
Q ss_pred HHhhh
Q 002835 764 EQLEK 768 (875)
Q Consensus 764 ~~~~~ 768 (875)
+-|-.
T Consensus 1361 ~~~~k 1365 (1930)
T KOG0161|consen 1361 QWKKK 1365 (1930)
T ss_pred HHHHH
Confidence 44433
No 241
>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]
Probab=39.07 E-value=3e+02 Score=29.11 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=24.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 002835 741 IAQAETDIINLKQKAKDLRVQLSEQLEK 768 (875)
Q Consensus 741 i~~~e~~v~~l~~~~~~l~~~l~~~~~~ 768 (875)
|.++.--+.||||.|.++.|-..|.+=.
T Consensus 72 l~qt~~qL~nlEqmvsdiEft~vqk~V~ 99 (209)
T KOG2910|consen 72 LTQTDNQLINLEQMVSDIEFTQVQKKVM 99 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999998886543
No 242
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=38.58 E-value=2.2e+02 Score=36.87 Aligned_cols=23 Identities=13% Similarity=0.375 Sum_probs=9.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHH
Q 002835 741 IAQAETDIINLKQKAKDLRVQLS 763 (875)
Q Consensus 741 i~~~e~~v~~l~~~~~~l~~~l~ 763 (875)
+..++..+.+++.++..+..+|.
T Consensus 917 l~~l~~~~~~~~~~~~~l~~~l~ 939 (1179)
T TIGR02168 917 LEELREKLAQLELRLEGLEVRID 939 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444
No 243
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=38.41 E-value=2.5e+02 Score=36.55 Aligned_cols=21 Identities=14% Similarity=0.321 Sum_probs=9.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHH
Q 002835 741 IAQAETDIINLKQKAKDLRVQ 761 (875)
Q Consensus 741 i~~~e~~v~~l~~~~~~l~~~ 761 (875)
+..++..+..|++++.+|...
T Consensus 478 l~~l~~~l~~l~~~~~~l~~~ 498 (1164)
T TIGR02169 478 YDRVEKELSKLQRELAEAEAQ 498 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 244
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=38.03 E-value=2e+02 Score=36.20 Aligned_cols=80 Identities=11% Similarity=0.225 Sum_probs=51.0
Q ss_pred chhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHH
Q 002835 671 NEILEASLESRKKALHERRLALENDVARLKDQLQK-ERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDII 749 (875)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~ql~~-e~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~v~ 749 (875)
++-++.++++|.++...-..-|++.+.+|+.+|.+ |..|...-.. .+ ...+...+++.|+.|+.+++.++
T Consensus 251 ~~Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~-----~~----~~d~~~ea~~~l~~~~~l~~ql~ 321 (726)
T PRK09841 251 NNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQ-----RD----SVDLNLEAKAVLEQIVNVDNQLN 321 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cC----CCCCCHHHHHHHHHHHHHHHHHH
Confidence 34445566666665555555678888888877753 5555443332 11 12356778889999988888888
Q ss_pred HHHHHHHHHH
Q 002835 750 NLKQKAKDLR 759 (875)
Q Consensus 750 ~l~~~~~~l~ 759 (875)
.|+++..+|.
T Consensus 322 ~l~~~~~~l~ 331 (726)
T PRK09841 322 ELTFREAEIS 331 (726)
T ss_pred HHHHHHHHHH
Confidence 7777666553
No 245
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=37.95 E-value=6.2e+02 Score=29.95 Aligned_cols=50 Identities=18% Similarity=0.191 Sum_probs=34.9
Q ss_pred hHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcchhcccc
Q 002835 734 TKVELGEIAQAETDIINLKQKAKDLRVQLSEQLEKNDGFVGDSSNQLHQTS 784 (875)
Q Consensus 734 ~~~~l~~i~~~e~~v~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 784 (875)
-+.+...++.+++++..|+.+...|..++.+.++ ..+.+.+...++..+.
T Consensus 312 ~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~-~~~~~~~~~~el~~L~ 361 (498)
T TIGR03007 312 YQQLQIELAEAEAEIASLEARVAELTARIERLES-LLRTIPEVEAELTQLN 361 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhchHHHHHHHHHH
Confidence 3666678888999999999999999998887544 3444555444444443
No 246
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=37.95 E-value=35 Score=41.45 Aligned_cols=20 Identities=20% Similarity=0.428 Sum_probs=8.4
Q ss_pred ecCCCCCCCCCCccceeecC
Q 002835 117 FRSDPSAIPQKGSEVNLTLG 136 (875)
Q Consensus 117 YKd~k~~~p~~g~e~~i~L~ 136 (875)
|+.+.-..|.+|-++.+.+.
T Consensus 535 ~~~qsIilPI~grpVPFHis 554 (1001)
T COG5406 535 FARQSIILPIGGRPVPFHIS 554 (1001)
T ss_pred eccceEEEeecCcccceeeh
Confidence 44443333444444444443
No 247
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=37.86 E-value=3.1e+02 Score=31.42 Aligned_cols=89 Identities=18% Similarity=0.274 Sum_probs=55.9
Q ss_pred HHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhh
Q 002835 665 ADEVKGNEILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQA 744 (875)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~ 744 (875)
++---+|+-||++|+.=++ +|| +-|.+...|-..|-+++.-..+|-. .-..+|...+.+=.+-|
T Consensus 137 ~~~~EEn~~lqlqL~~l~~---e~~-Ekeeesq~LnrELaE~layqq~L~~---eyQatf~eq~~ml~kRQ--------- 200 (401)
T PF06785_consen 137 RHLREENQCLQLQLDALQQ---ECG-EKEEESQTLNRELAEALAYQQELND---EYQATFVEQHSMLDKRQ--------- 200 (401)
T ss_pred HHHHHHHHHHHHhHHHHHH---HHh-HhHHHHHHHHHHHHHHHHHHHHHHH---HhhcccccchhhhHHHH---------
Confidence 3333568888888865332 333 4567777787778888877776654 33446655555555554
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcc
Q 002835 745 ETDIINLKQKAKDLRVQLSEQLEKND 770 (875)
Q Consensus 745 e~~v~~l~~~~~~l~~~l~~~~~~~~ 770 (875)
+.|.+||.||.||-..+..-.|...
T Consensus 201 -~yI~~LEsKVqDLm~EirnLLQle~ 225 (401)
T PF06785_consen 201 -AYIGKLESKVQDLMYEIRNLLQLES 225 (401)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4566777777777776665555443
No 248
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=37.59 E-value=2.2e+02 Score=32.29 Aligned_cols=38 Identities=16% Similarity=0.153 Sum_probs=20.9
Q ss_pred HhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HHhHHH
Q 002835 674 LEASLESR-KKALHERRLALENDVARLKDQLQK-ERDKRT 711 (875)
Q Consensus 674 ~~~~~~~~-~~~~~~~r~~le~~v~~l~~ql~~-e~~~~~ 711 (875)
.++.+++. .++....+.-|++.|.+++++|.+ |..|..
T Consensus 156 ~~~~i~~~~~~~~~~a~~fl~~ql~~~~~~l~~ae~~l~~ 195 (362)
T TIGR01010 156 GERLINRLNERARKDTIAFAENEVKEAEQRLNATKAELLK 195 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444442 222334445588888888877754 444444
No 249
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=37.27 E-value=2.6e+02 Score=36.31 Aligned_cols=19 Identities=16% Similarity=0.405 Sum_probs=7.6
Q ss_pred hhhhHHHHHHHHHHHHHHH
Q 002835 743 QAETDIINLKQKAKDLRVQ 761 (875)
Q Consensus 743 ~~e~~v~~l~~~~~~l~~~ 761 (875)
.++..+.+|+.++..+..+
T Consensus 912 ~l~~~l~~l~~~~~~~~~~ 930 (1179)
T TIGR02168 912 ELRRELEELREKLAQLELR 930 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444333
No 250
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=37.21 E-value=41 Score=40.50 Aligned_cols=102 Identities=18% Similarity=0.233 Sum_probs=55.3
Q ss_pred CcEEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEec
Q 002835 82 NAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPD 161 (875)
Q Consensus 82 ~~v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~ 161 (875)
+...||||+.--..+. .--+|+|..|.-.++..|.+......-+..+++..|. +...+.-+.+......+||+|.+.
T Consensus 411 st~~kEGWmvHyt~~d--~lRkrHYWrldsk~itlfqn~s~~ryYkeIPLsEIl~-v~~~~~~~~vp~~~~phcFEI~T~ 487 (888)
T KOG4236|consen 411 STKLKEGWMVHYTSKD--NLRKRHYWRLDSKCITLFQNESTNRYYKEIPLSEILS-VSSNNGFSLVPAGTNPHCFEIRTA 487 (888)
T ss_pred hhhhhcceEEEEechh--hhhhhhhheeccceeEeeecCCCceeEEeecHHHhhe-eeccCCcccCCCCCCCceEEEEee
Confidence 4478899875322221 1235667778888888877766432111111111111 111111111223346799999874
Q ss_pred CCCCceeEEEecc------------hhhHHHHHHHHHhhhc
Q 002835 162 GRDGRAFTLKAES------------LEDLYDWKTALENALA 190 (875)
Q Consensus 162 ~~dgrty~fQAdS------------EeE~~eWI~AI~~ai~ 190 (875)
.+-||-.++ -...+.|-.||+.+..
T Consensus 488 ----~~vyfVge~p~~~~~~~~g~g~d~a~~w~~ai~~alM 524 (888)
T KOG4236|consen 488 ----TTVYFVGENPSSTPGGESGVGLDAAQGWETAIQQALM 524 (888)
T ss_pred ----eEEEEecCCCCCCccccccccchhhccCchhhhhccc
Confidence 355666666 3348899999999875
No 251
>PHA02562 46 endonuclease subunit; Provisional
Probab=37.00 E-value=2.7e+02 Score=33.31 Aligned_cols=58 Identities=19% Similarity=0.266 Sum_probs=28.2
Q ss_pred hhhhhhhhcchHHHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002835 647 EVEIQRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQLQK 705 (875)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~ql~~ 705 (875)
+..+..|+....+|+.++.+--..=..++...++++ .+..+-..|++....++..|..
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~-~~~~~i~el~~~i~~~~~~i~~ 355 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFN-EQSKKLLELKNKISTNKQSLIT 355 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 566667777777777666543333333333333322 2333334444444444444433
No 252
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=36.78 E-value=3.6e+02 Score=31.79 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=14.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHH
Q 002835 740 EIAQAETDIINLKQKAKDLRVQLSE 764 (875)
Q Consensus 740 ~i~~~e~~v~~l~~~~~~l~~~l~~ 764 (875)
.++.++.++..|+..+..++.++..
T Consensus 237 ~~~~~~~~i~~l~~~i~~~~~~~~~ 261 (457)
T TIGR01000 237 ILATIQQQIDQLQKSIASYQVQKAG 261 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555555666666666666555554
No 253
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=36.55 E-value=3.3e+02 Score=28.33 Aligned_cols=96 Identities=15% Similarity=0.265 Sum_probs=37.9
Q ss_pred hhhcchHHHHHHHHHhhhcchhHhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCC
Q 002835 652 RLEDTKSDLQRKIADEVKGNEILEASLESR---KKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPD 728 (875)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~r~~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~~~~ 728 (875)
.+--.+.+|+.+|...--.+..|++.+... -..|...+.+|+..+..|.+.|.+-......|-
T Consensus 85 el~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~-------------- 150 (194)
T PF08614_consen 85 ELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQ-------------- 150 (194)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
T ss_pred ccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence 344567777777765555555566555443 345666666788888888877766544443222
Q ss_pred CCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 002835 729 TIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSE 764 (875)
Q Consensus 729 ~~~~~~~~~l~~i~~~e~~v~~l~~~~~~l~~~l~~ 764 (875)
+...++--+...+|..+.+|+.+-.+|=-++-+
T Consensus 151 ---DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 151 ---DELQALQLQLNMLEEKLRKLEEENRELVERWMQ 183 (194)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122333345556666666666666555544433
No 254
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=36.48 E-value=3.5e+02 Score=34.98 Aligned_cols=78 Identities=21% Similarity=0.277 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhh-----
Q 002835 694 NDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSEQLEK----- 768 (875)
Q Consensus 694 ~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~v~~l~~~~~~l~~~l~~~~~~----- 768 (875)
+....+++++++.......+...+.. +.....+...+.+.+++.+..++..+..+..++++++..
T Consensus 382 e~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (908)
T COG0419 382 ERLKQLEEAIQELKEELAELSAALEE----------IQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIA 451 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666655554433 333344455566777888888888888888888886541
Q ss_pred ---ccCCCCCCcchhc
Q 002835 769 ---NDGFVGDSSNQLH 781 (875)
Q Consensus 769 ---~~~~~~~~~~~~~ 781 (875)
..|-.|..|++++
T Consensus 452 ~l~~~~~~CPvCg~~l 467 (908)
T COG0419 452 ELAGAGEKCPVCGQEL 467 (908)
T ss_pred HHHhCCCCCCCCCCCC
Confidence 1478899999543
No 255
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=35.79 E-value=2.1e+02 Score=37.84 Aligned_cols=77 Identities=21% Similarity=0.291 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 002835 685 LHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSE 764 (875)
Q Consensus 685 ~~~~r~~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~v~~l~~~~~~l~~~l~~ 764 (875)
++..-..+.-+|.+||-||+.|++-|..+..-|.. ..+. ++. -.+|.....|..++..+..++.-
T Consensus 747 l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~~eLss-q~~~-------------~~t-~~~Ekq~~~~~~~l~~~K~~~e~ 811 (1317)
T KOG0612|consen 747 LRRSKDQLITEVLKLQSMLEQEISKRLSLQRELKS-QEQE-------------VNT-KMLEKQLKKLLDELAELKKQLEE 811 (1317)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhh-HHHh-------------hcc-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444458889999999999999999999988762 2211 111 34455555555555555566666
Q ss_pred HhhhccCCCCCC
Q 002835 765 QLEKNDGFVGDS 776 (875)
Q Consensus 765 ~~~~~~~~~~~~ 776 (875)
++.+-.|.-.+.
T Consensus 812 ~~~q~~~~~~~~ 823 (1317)
T KOG0612|consen 812 ENAQLRGLNRSA 823 (1317)
T ss_pred HHHHhhcccccc
Confidence 666655554443
No 256
>PRK04863 mukB cell division protein MukB; Provisional
Probab=35.75 E-value=3.5e+02 Score=37.07 Aligned_cols=29 Identities=17% Similarity=0.193 Sum_probs=22.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 002835 740 EIAQAETDIINLKQKAKDLRVQLSEQLEK 768 (875)
Q Consensus 740 ~i~~~e~~v~~l~~~~~~l~~~l~~~~~~ 768 (875)
.+..++..+..||+++..+...+.+-++.
T Consensus 450 klee~e~qL~elE~kL~~lea~leql~~~ 478 (1486)
T PRK04863 450 KEQEATEELLSLEQKLSVAQAAHSQFEQA 478 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888888888765544
No 257
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=35.03 E-value=3.7e+02 Score=28.28 Aligned_cols=53 Identities=21% Similarity=0.302 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 002835 685 LHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQ 761 (875)
Q Consensus 685 ~~~~r~~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~v~~l~~~~~~l~~~ 761 (875)
+.+....||+.+-+||++++.=.. +..+.=.||+.+++++..|++.+.+...+
T Consensus 129 ~e~~i~~Le~ki~el~~~~~~~~~------------------------~ke~~~~ei~~lks~~~~l~~~~~~~e~~ 181 (190)
T PF05266_consen 129 LESEIKELEMKILELQRQAAKLKE------------------------KKEAKDKEISRLKSEAEALKEEIENAELE 181 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555677777777766543222 23333389999999999999999876654
No 258
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=34.96 E-value=3.3e+02 Score=36.27 Aligned_cols=16 Identities=13% Similarity=0.135 Sum_probs=7.1
Q ss_pred CceeEEEecchhhHHH
Q 002835 165 GRAFTLKAESLEDLYD 180 (875)
Q Consensus 165 grty~fQAdSEeE~~e 180 (875)
|++--|--..+.++..
T Consensus 144 G~V~~i~~~kp~err~ 159 (1163)
T COG1196 144 GKVEEIINAKPEERRK 159 (1163)
T ss_pred ccHHHHHcCCHHHHHH
Confidence 4433343344555544
No 259
>PF04714 BCL_N: BCL7, N-terminal conserver region; InterPro: IPR006804 The members of this group of sequences contain a conserved N-terminal domain which is found in the BCL7 family. The function of BCL7 proteins is unknown, though they may be involved in early development. Notably, BCL7B is commonly hemizygously deleted in patients with Williams syndrome [].
Probab=34.82 E-value=17 Score=30.19 Aligned_cols=20 Identities=30% Similarity=0.815 Sum_probs=18.6
Q ss_pred ccCceeEEEEEeCCeEEEec
Q 002835 99 WTSWKKRWFILTHTSLVFFR 118 (875)
Q Consensus 99 ~ksWkKRWfVL~~~sL~yYK 118 (875)
++.|.|.|+++.+.+|.+||
T Consensus 27 Vr~wEKKWVtv~dtslriyK 46 (52)
T PF04714_consen 27 VRKWEKKWVTVGDTSLRIYK 46 (52)
T ss_pred HHHHhhceEEeccceEEEEE
Confidence 57899999999999999998
No 260
>PRK00106 hypothetical protein; Provisional
Probab=34.34 E-value=1.4e+02 Score=36.35 Aligned_cols=36 Identities=14% Similarity=0.213 Sum_probs=23.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 002835 740 EIAQAETDIINLKQKAKDLRVQLSEQLEKNDGFVGD 775 (875)
Q Consensus 740 ~i~~~e~~v~~l~~~~~~l~~~l~~~~~~~~~~~~~ 775 (875)
++...+..+.++++++..|..+..++.+.-.|-..+
T Consensus 133 eLe~reeeLee~~~~~~~~~~~~~~~Le~~a~lt~~ 168 (535)
T PRK00106 133 SLTDKSKHIDEREEQVEKLEEQKKAELERVAALSQA 168 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 455555666666666677777777777776666554
No 261
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=34.26 E-value=42 Score=42.42 Aligned_cols=9 Identities=0% Similarity=-0.352 Sum_probs=3.9
Q ss_pred hhHHHHHHH
Q 002835 176 EDLYDWKTA 184 (875)
Q Consensus 176 eE~~eWI~A 184 (875)
-++..|-.+
T Consensus 301 l~R~a~~~l 309 (784)
T PF04931_consen 301 LHRKALQFL 309 (784)
T ss_pred HHHHHHHHH
Confidence 344444333
No 262
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=33.93 E-value=2e+02 Score=32.48 Aligned_cols=106 Identities=19% Similarity=0.266 Sum_probs=63.5
Q ss_pred hhhhcchHHHHHHHH-----------HhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcC
Q 002835 651 QRLEDTKSDLQRKIA-----------DEVKGNEILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGE 719 (875)
Q Consensus 651 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~ql~~e~~~~~~le~~~~~ 719 (875)
.+||..+..|++||. .-|+||..|++-++==| .|-.|..++.+.|.+-...-. +
T Consensus 45 ~~l~~lq~~L~~kI~IvspAIDLIel~aaRGNt~Lesal~L~~--------~L~~eI~~f~~~l~~~~~~~e----~--- 109 (302)
T PF05508_consen 45 KELEKLQRRLESKIKIVSPAIDLIELIAARGNTSLESALPLTK--------DLRREIDSFDERLEEAAEKEE----L--- 109 (302)
T ss_pred HHHHHHHHHHHhhhhccccHHHHHHHHHhcCCccHHHHHHHHH--------HHHHHHHHHHHHHHHHHHhhh----h---
Confidence 899999999999992 56899999999876322 233444444444433222111 0
Q ss_pred CCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHH----HHHHHHHHhhhccCCCCCCcchhcc
Q 002835 720 FNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKD----LRVQLSEQLEKNDGFVGDSSNQLHQ 782 (875)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~l~~i~~~e~~v~~l~~~~~~----l~~~l~~~~~~~~~~~~~~~~~~~~ 782 (875)
....+..-++|..+|.++.+|=.++++ |+.-|.---..-+++++..-+..+.
T Consensus 110 -----------~~~~~~~~~~i~~V~~~ik~LL~rId~aiPlinLaltTSG~~lst~lp~~vSPsRL 165 (302)
T PF05508_consen 110 -----------SKSSENQKESIKKVERYIKDLLARIDDAIPLINLALTTSGVNLSTSLPPTVSPSRL 165 (302)
T ss_pred -----------ccCcchhHHHHHHHHHHHHHHHHHHHhhcchHHHHHHhccccccCCCCCCcCHHHH
Confidence 112244456778888888888777776 4555554334444555444333333
No 263
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=33.41 E-value=1.7e+02 Score=30.56 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=11.6
Q ss_pred hhHHHHhhhhhhhhHHHHHHHHHH
Q 002835 733 KTKVELGEIAQAETDIINLKQKAK 756 (875)
Q Consensus 733 ~~~~~l~~i~~~e~~v~~l~~~~~ 756 (875)
.-.+.|+++..++..+..|+.++.
T Consensus 104 eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 104 EREELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555554444444433
No 264
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=33.33 E-value=2.3e+02 Score=25.08 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=19.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 002835 740 EIAQAETDIINLKQKAKDLRVQLSEQL 766 (875)
Q Consensus 740 ~i~~~e~~v~~l~~~~~~l~~~l~~~~ 766 (875)
.|..|=..+.+|+.++..|..+|-..|
T Consensus 41 ~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 41 QLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555567788888888888876554
No 265
>PRK02224 chromosome segregation protein; Provisional
Probab=33.32 E-value=2e+02 Score=36.62 Aligned_cols=15 Identities=20% Similarity=0.173 Sum_probs=9.6
Q ss_pred cchhhHHHHHHHHHh
Q 002835 173 ESLEDLYDWKTALEN 187 (875)
Q Consensus 173 dSEeE~~eWI~AI~~ 187 (875)
....+...||..|-+
T Consensus 109 ~~~~~~~~~i~~llg 123 (880)
T PRK02224 109 DGARDVREEVTELLR 123 (880)
T ss_pred cChHHHHHHHHHHHC
Confidence 345677778777644
No 266
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=33.21 E-value=1.8e+02 Score=34.65 Aligned_cols=57 Identities=23% Similarity=0.367 Sum_probs=32.4
Q ss_pred HHHHHHHHHhhhcchhHhhhHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 002835 658 SDLQRKIADEVKGNEILEASLESRKK-----------ALHERRLALENDVARLKDQLQKERDKRTAME 714 (875)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~r~~le~~v~~l~~ql~~e~~~~~~le 714 (875)
.+|+.++++=.+.|..|++..||=++ |+...|.+|+++...|++++|+=..+-.-|.
T Consensus 69 k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~ 136 (472)
T TIGR03752 69 KELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQ 136 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555666666666555433 5666666666666666666665444444443
No 267
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=32.78 E-value=2.9e+02 Score=31.28 Aligned_cols=18 Identities=39% Similarity=0.643 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002835 684 ALHERRLALENDVARLKD 701 (875)
Q Consensus 684 ~~~~~r~~le~~v~~l~~ 701 (875)
++.++..+|+.+|..|+.
T Consensus 176 ~l~~~~~~L~~e~~~L~~ 193 (312)
T smart00787 176 KLRDRKDALEEELRQLKQ 193 (312)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555666666666666553
No 268
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=32.45 E-value=5.1e+02 Score=32.11 Aligned_cols=68 Identities=24% Similarity=0.367 Sum_probs=32.6
Q ss_pred CCCCchh---hhhhhhhcchHHHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHH
Q 002835 641 DGPSDNE---VEIQRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARL---KDQLQKERDKRTAME 714 (875)
Q Consensus 641 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l---~~ql~~e~~~~~~le 714 (875)
++|.+.+ .-..|||..|.-|+.++. +|--.+|..++...+--.-||.--.+| .|+||.|.--|.+||
T Consensus 101 ~s~~~~~~yQerLaRLe~dkesL~LQvs-------vLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLE 173 (861)
T KOG1899|consen 101 VSCPEYPEYQERLARLEMDKESLQLQVS-------VLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLE 173 (861)
T ss_pred ccCCcchHHHHHHHHHhcchhhheehHH-------HHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHH
Confidence 3444433 345678888887776652 222333334443333333333222222 355555555555555
Q ss_pred h
Q 002835 715 A 715 (875)
Q Consensus 715 ~ 715 (875)
.
T Consensus 174 T 174 (861)
T KOG1899|consen 174 T 174 (861)
T ss_pred H
Confidence 4
No 269
>KOG3520 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=32.34 E-value=58 Score=42.46 Aligned_cols=45 Identities=20% Similarity=0.380 Sum_probs=36.9
Q ss_pred cCCcceEEEEecCCCCceeEEEecchhhHHHHHHHHHhhhccCCC
Q 002835 150 ADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAPS 194 (875)
Q Consensus 150 ~~KK~~FvI~~~~~dgrty~fQAdSEeE~~eWI~AI~~ai~~aP~ 194 (875)
.++|-+|.|......--.|-+.|.|..|++.||..|+.++...|.
T Consensus 682 td~ka~FlIs~s~~~pqmYEL~a~T~serntW~~li~~~v~s~~~ 726 (1167)
T KOG3520|consen 682 TDEKAFFLISMSDQGPEMYELVAQSKSERNTWIQLIQDAVASCPR 726 (1167)
T ss_pred ccccceEEEecCCCCCeeEEEecCCHHHHHHHHHHHHHHHHhCCc
Confidence 467778888876444568999999999999999999999976553
No 270
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=31.96 E-value=1.9e+02 Score=36.40 Aligned_cols=21 Identities=43% Similarity=0.550 Sum_probs=15.0
Q ss_pred hhhhhhhhhcchHHHHHHHHH
Q 002835 646 NEVEIQRLEDTKSDLQRKIAD 666 (875)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~ 666 (875)
.+..|+.|.....+|+.+++.
T Consensus 286 ~~~~i~~L~~~l~~l~~~~~~ 306 (754)
T TIGR01005 286 LEDLIQRLRERQAELRATIAD 306 (754)
T ss_pred ccHHHHHHHHHHHHHHHHHHH
Confidence 356788888777777777654
No 271
>TIGR02420 dksA RNA polymerase-binding protein DksA. The model that is the basis for this family describes a small, pleiotropic protein, DksA (DnaK suppressor A), originally named as a multicopy suppressor of temperature sensitivity of dnaKJ mutants. DksA mutants are defective in quorum sensing, virulence, etc. DksA is now understood to bind RNA polymerase directly and modulate its response to small molecules to control the level of transcription of rRNA. Nearly all members of this family are in the Proteobacteria. Whether the closest homologs outside the Proteobacteria function equivalently is unknown. The low value set for the noise cutoff allows identification of possible DksA proteins from outside the proteobacteria. TIGR02419 describes a closely related family of short sequences usually found in prophage regions of proteobacterial genomes or in known phage.
Probab=31.86 E-value=3.8e+02 Score=25.42 Aligned_cols=35 Identities=9% Similarity=-0.001 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcchhc
Q 002835 746 TDIINLKQKAKDLRVQLSEQLEKNDGFVGDSSNQLH 781 (875)
Q Consensus 746 ~~v~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 781 (875)
+.+.+..+++..+..-|..-..-.|| .|..|..+.
T Consensus 56 ~~~~~~~~~l~~i~~AL~ri~~g~yG-~C~~Cge~I 90 (110)
T TIGR02420 56 RTRDRERKLIKKIDEALKRIEDGEYG-YCEECGEEI 90 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCC-chhccCCcc
Confidence 33344456677778888887778888 888888754
No 272
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=31.17 E-value=2.2e+02 Score=28.99 Aligned_cols=66 Identities=30% Similarity=0.413 Sum_probs=50.8
Q ss_pred CchhhhhhhhhcchHHHHHHHHHhhhcchhHhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002835 644 SDNEVEIQRLEDTKSDLQRKIADEVKGNEILEASLES---RKKALHERRLALENDVARLKDQLQKERDK 709 (875)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~r~~le~~v~~l~~ql~~e~~~ 709 (875)
.++|+...-||....++..++.-=|+-=..|+|..+- ..+.|.+|+-++|+-+.+|++=|+.....
T Consensus 22 ~d~e~~~dtLe~i~~~~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~m~~ 90 (162)
T PF05565_consen 22 LDEEAIADTLESIEDEIEEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDAMEA 90 (162)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777889998899998885555555556665554 45589999999999999999998765443
No 273
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=31.15 E-value=3.3e+02 Score=30.99 Aligned_cols=20 Identities=20% Similarity=0.327 Sum_probs=7.9
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q 002835 743 QAETDIINLKQKAKDLRVQL 762 (875)
Q Consensus 743 ~~e~~v~~l~~~~~~l~~~l 762 (875)
.+++++..++.++..+..++
T Consensus 207 ~~~~~l~~~~~~l~~~~~~l 226 (423)
T TIGR01843 207 EAQGELGRLEAELEVLKRQI 226 (423)
T ss_pred HHHhHHHHHHHHHHHHHHHH
Confidence 33333344444444433333
No 274
>KOG4095 consensus Uncharacterized conserved protein (tumor-specific protein BCL7 in humans) [General function prediction only]
Probab=31.11 E-value=20 Score=36.04 Aligned_cols=22 Identities=27% Similarity=0.643 Sum_probs=19.8
Q ss_pred ccCceeEEEEEeCCeEEEecCC
Q 002835 99 WTSWKKRWFILTHTSLVFFRSD 120 (875)
Q Consensus 99 ~ksWkKRWfVL~~~sL~yYKd~ 120 (875)
++.|.|+|+++.+..|.+||=-
T Consensus 28 VRrWEKKwVtvgDTslRIyKWV 49 (165)
T KOG4095|consen 28 VRRWEKKWVTVGDTSLRIYKWV 49 (165)
T ss_pred HHHHhhheEeecccceEEEEee
Confidence 5789999999999999999943
No 275
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=30.80 E-value=2.6e+02 Score=30.39 Aligned_cols=67 Identities=13% Similarity=0.150 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHH-HHHH
Q 002835 689 RLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQ-LSEQ 765 (875)
Q Consensus 689 r~~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~v~~l~~~~~~l~~~-l~~~ 765 (875)
+-+|.+|-.++=++|+.=-.=...||+.+..+. +.-....+.|..+...+..|+.+|+++... |+..
T Consensus 41 ~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~----------~er~~~~~~i~r~~eey~~Lk~~in~~R~e~lgl~ 108 (230)
T PF10146_consen 41 MEELLQERMAHVEELRQINQDINTLENIIKQAE----------SERNKRQEKIQRLYEEYKPLKDEINELRKEYLGLE 108 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 344666666666666332222234666553322 123446777888888889999999988877 6653
No 276
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=30.69 E-value=4.4e+02 Score=31.95 Aligned_cols=14 Identities=21% Similarity=0.323 Sum_probs=7.2
Q ss_pred hHHHHhhhhhhhhH
Q 002835 734 TKVELGEIAQAETD 747 (875)
Q Consensus 734 ~~~~l~~i~~~e~~ 747 (875)
....|++||-+=++
T Consensus 134 ~~~~le~~a~lt~~ 147 (514)
T TIGR03319 134 QREELERISGLTQE 147 (514)
T ss_pred HHHHHHHHhCCCHH
Confidence 34456666554433
No 277
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=30.41 E-value=3.4e+02 Score=32.10 Aligned_cols=90 Identities=12% Similarity=0.135 Sum_probs=47.6
Q ss_pred cchhHhhhHHH----HHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHH-HhhhcCCCCCCCCCCCCChhhHHHHhhhhh
Q 002835 670 GNEILEASLES----RKKALHERRLALENDVARLKDQLQ-KERDKRTAM-EAGLGEFNGSFPIPDTIDEKTKVELGEIAQ 743 (875)
Q Consensus 670 ~~~~~~~~~~~----~~~~~~~~r~~le~~v~~l~~ql~-~e~~~~~~l-e~~~~~~~~~~~~~~~~~~~~~~~l~~i~~ 743 (875)
.|++.++.++. |.+....-+.-|++.+.+++++|. .|..|+... ++|+..... ...+.......-+++..
T Consensus 140 ~n~l~~~yi~~~~~~~~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~----~~~~~~~l~~l~~~l~~ 215 (498)
T TIGR03007 140 VQTLLTIFVEETLGSKRQDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQ----EGDYYSEISEAQEELEA 215 (498)
T ss_pred HHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccc----hhhHHHHHHHHHHHHHH
Confidence 36666666664 444555566778999999999886 466666654 333321100 01122222333334445
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 002835 744 AETDIINLKQKAKDLRVQLS 763 (875)
Q Consensus 744 ~e~~v~~l~~~~~~l~~~l~ 763 (875)
+++++..++.++..|..+|.
T Consensus 216 ~~~~l~~~~a~~~~l~~~l~ 235 (498)
T TIGR03007 216 ARLELNEAIAQRDALKRQLG 235 (498)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 55555555555555544443
No 278
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=29.68 E-value=6.4e+02 Score=31.61 Aligned_cols=113 Identities=26% Similarity=0.285 Sum_probs=74.6
Q ss_pred hhhhhhcchHHHHHHHHHhhh-------cchhHhhhHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--
Q 002835 649 EIQRLEDTKSDLQRKIADEVK-------GNEILEASLES------RKKALHERRLALENDVARLKDQLQKERDKRTAM-- 713 (875)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~------~~~~~~~~r~~le~~v~~l~~ql~~e~~~~~~l-- 713 (875)
.||.|+-.+..+-.++. |++ -+.+||+.+|+ |-..|.++-+-||-++.+|+..|+.+-.+++.+
T Consensus 249 qlqel~~l~~a~~q~~e-e~~~~re~~~tv~~LqeE~e~Lqskl~~~~~l~~~~~~LELeN~~l~tkL~rwE~~~~~~~~ 327 (716)
T KOG4593|consen 249 QLQELEELERALSQLRE-ELATLRENRETVGLLQEELEGLQSKLGRLEKLQSTLLGLELENEDLLTKLQRWERADQEMGS 327 (716)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 45666555555544442 333 35677777774 444667777789999999999999988777752
Q ss_pred -----------------HhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 002835 714 -----------------EAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQL 762 (875)
Q Consensus 714 -----------------e~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~v~~l~~~~~~l~~~l 762 (875)
.+.|+.-..++..|..++.++..+|-+.-.-=+-+..++.|...||-+|
T Consensus 328 ~~~~~~~~~~~~~e~s~~~~l~~~~~t~~s~~~~~~r~~q~lke~~k~~~~ite~~tklk~l~etl 393 (716)
T KOG4593|consen 328 LRTPEDLMEKLVNEQSRNANLKNKNSTVTSPARGLERARQLLKEELKQVAGITEEETKLKELHETL 393 (716)
T ss_pred cCCHHHHHHHHHHHHHHHhhhccccccccCcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 2344555677888888999988888765444444445555666666553
No 279
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=29.62 E-value=6.2e+02 Score=25.84 Aligned_cols=94 Identities=19% Similarity=0.348 Sum_probs=0.0
Q ss_pred hhhhhhhhcchHHHHHHHHHhhhcchhHh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCC
Q 002835 647 EVEIQRLEDTKSDLQRKIADEVKGNEILE---ASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGS 723 (875)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~r~~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~ 723 (875)
+.++..++....+++..+.+.-+....++ .+.+.|=+++.+....++++..+|+ ++..+.+.
T Consensus 94 ~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~---~~~~~~~~------------ 158 (191)
T PF04156_consen 94 QEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ---KELQDSRE------------ 158 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH------------
Q ss_pred CCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 002835 724 FPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSE 764 (875)
Q Consensus 724 ~~~~~~~~~~~~~~l~~i~~~e~~v~~l~~~~~~l~~~l~~ 764 (875)
..+.+-+.+..+.++...|++++.++.--+.|
T Consensus 159 ---------~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~ 190 (191)
T PF04156_consen 159 ---------EVQELRSQLERLQENLQQLEEKIQELQELLEQ 190 (191)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 280
>PLN02678 seryl-tRNA synthetase
Probab=29.14 E-value=1.3e+02 Score=35.82 Aligned_cols=30 Identities=10% Similarity=0.229 Sum_probs=14.7
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 002835 735 KVELGEIAQAETDIINLKQKAKDLRVQLSE 764 (875)
Q Consensus 735 ~~~l~~i~~~e~~v~~l~~~~~~l~~~l~~ 764 (875)
.++++++..+-..+..|+.++..|..+|.+
T Consensus 74 ~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~ 103 (448)
T PLN02678 74 TELIAETKELKKEITEKEAEVQEAKAALDA 103 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555555555555544
No 281
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=29.14 E-value=1e+02 Score=36.67 Aligned_cols=58 Identities=19% Similarity=0.301 Sum_probs=39.1
Q ss_pred CCCCCCchhhhhhhhhcch---HHHHHHHHHhhhcchhHhhhHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 002835 639 SIDGPSDNEVEIQRLEDTK---SDLQRKIADEVKGNEILEASLE---SRKKALHERRLALENDVARLKDQL 703 (875)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~r~~le~~v~~l~~ql 703 (875)
-|+-..++-+..-+|+... .+|+.+|+++ +.+++ +..+.+.++=..||.++++|+.|+
T Consensus 57 vV~~~FddkVnqSALteqQ~kasELEKqLaaL-------rqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 57 VVDTTFDDKVRQHATTEMQVTAAQMQKQYEEI-------RRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred eecchhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4555566656666665544 7888888876 44444 555555444447999999999998
No 282
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=29.06 E-value=4.1e+02 Score=33.89 Aligned_cols=58 Identities=26% Similarity=0.370 Sum_probs=40.3
Q ss_pred chhhhhhhhhcchHHHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002835 645 DNEVEIQRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQLQKE 706 (875)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~ql~~e 706 (875)
+=|..|++||..+.+++.+..+ =+.+.+.+++.++.+.+.+..|++...++.+++++|
T Consensus 517 ~~~~li~~l~~~~~~~e~~~~~----~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 574 (782)
T PRK00409 517 KLNELIASLEELERELEQKAEE----AEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKE 574 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888999888888776532 234556666777777777777777777777666665
No 283
>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]
Probab=28.97 E-value=55 Score=40.31 Aligned_cols=102 Identities=19% Similarity=0.154 Sum_probs=58.7
Q ss_pred EEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccc------eeecCCeeecCCCcee-eecCCcceE
Q 002835 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEV------NLTLGGIDLNNSGSVV-VKADKKLLT 156 (875)
Q Consensus 84 v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~------~i~L~~~~l~~s~sv~-~~~~KK~~F 156 (875)
..-+|||-+.+-+.. ++.||.|++..++|||...+..|.+.-.+ ...-.+|.-....... ..-.+.+|.
T Consensus 358 ~~~~GwlT~vk~g~s----kkv~~alv~~~~~~~k~~~d~rp~g~l~~~~~h~~ee~~s~~sde~~e~~~~r~l~~~~~~ 433 (936)
T KOG0248|consen 358 ASISGWLTRVKCGLS----KKVFAALVNQKLMFFKNSNDLVPNGFLCLQEKHNGTEEYSGSSDEQLETTKEHPQRKNNDS 433 (936)
T ss_pred CCcCcceeeeccccc----eeeeeeeeeeeeEEeecccccccccccchhhhhcceeeccCCchhhhhhhcCccccccCce
Confidence 456897776665553 78899999999999998776654431110 0111111100000000 001245666
Q ss_pred EEEecCCCCceeEEEecchhhHHHHHHHHHhhhc
Q 002835 157 VLFPDGRDGRAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 157 vI~~~~~dgrty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
+++.. ..+-+|||---+-++-..|+-.+..|..
T Consensus 434 l~~~~-~~~~p~yLi~~t~e~k~~wly~l~~A~g 466 (936)
T KOG0248|consen 434 LCVQI-ANEDPVYLILRTSEDKEKWLYYLKSASG 466 (936)
T ss_pred EEecc-CCCCCEEEEeeeccccceeeeeehhhcc
Confidence 66654 3456777777788888889887776654
No 284
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=28.61 E-value=6e+02 Score=34.04 Aligned_cols=46 Identities=24% Similarity=0.408 Sum_probs=27.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCC
Q 002835 675 EASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEF 720 (875)
Q Consensus 675 ~~~~~~~~~~~~~~r~~le~~v~~l~~ql~~e~~~~~~le~~~~~~ 720 (875)
+..+++.++.++.+|.+||+....+.+++.+=.+....|...+...
T Consensus 836 ~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~l~~l~~~~~~l 881 (1201)
T PF12128_consen 836 EQELNQLQKEVKQRRKELEEELKALEEQLEQLEEQLRRLRDLLEKL 881 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344445556667777777777777776666656555555555443
No 285
>PF14282 FlxA: FlxA-like protein
Probab=28.55 E-value=2e+02 Score=27.25 Aligned_cols=59 Identities=24% Similarity=0.385 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhc
Q 002835 691 ALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSEQLEKN 769 (875)
Q Consensus 691 ~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~v~~l~~~~~~l~~~l~~~~~~~ 769 (875)
.|++.+..|++||++-.+ ...+|.+++. +-+.++.+.|.-|+.++..|+.+..++....
T Consensus 23 ~L~~Qi~~Lq~ql~~l~~------------------~~~~~~e~k~--~q~q~Lq~QI~~LqaQI~qlq~q~~~~~~~~ 81 (106)
T PF14282_consen 23 QLQKQIKQLQEQLQELSQ------------------DSDLDAEQKQ--QQIQLLQAQIQQLQAQIAQLQSQQAEQQQQK 81 (106)
T ss_pred HHHHHHHHHHHHHHHHHc------------------ccCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466677777777764322 1345666664 4566677777777777777777776665443
No 286
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.43 E-value=3.2e+02 Score=32.48 Aligned_cols=40 Identities=30% Similarity=0.421 Sum_probs=28.4
Q ss_pred HHhhhcchhHhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 002835 665 ADEVKGNEILEASLESRK---KALHERRLALENDVARLKDQLQK 705 (875)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~---~~~~~~r~~le~~v~~l~~ql~~ 705 (875)
.+++-+|..|||--+.-- +||..+|.+++..-++|+ +|++
T Consensus 237 ~eq~eeneel~ae~kqh~v~~~ales~~sq~~e~~selE-~llk 279 (521)
T KOG1937|consen 237 TEQNEENEELQAEYKQHLVEYKALESKRSQFEEQNSELE-KLLK 279 (521)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHH
Confidence 456778888887543321 388899999998888887 5543
No 287
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.27 E-value=5.1e+02 Score=30.90 Aligned_cols=127 Identities=17% Similarity=0.342 Sum_probs=80.8
Q ss_pred cCCCCCCchhhhhhhhhcchHHHHHHHHHhhh-----cchhHhhhHHHHHH-------HHHHHH-HHHHHHHHHHHHHHH
Q 002835 638 ESIDGPSDNEVEIQRLEDTKSDLQRKIADEVK-----GNEILEASLESRKK-------ALHERR-LALENDVARLKDQLQ 704 (875)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-------~~~~~r-~~le~~v~~l~~ql~ 704 (875)
+.++--.+-|+-+++|+..-..++.+|-.=.+ -=+.||..|-=|++ +-.-+| .+|||||.-+-++.+
T Consensus 283 rl~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e~~~IqeleqdL~a~~eei~ 362 (521)
T KOG1937|consen 283 RLIEALDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETEDEEIRRIQELEQDLEAVDEEIE 362 (521)
T ss_pred HHHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667778888888877777776622111 11334444444433 111133 359999999999999
Q ss_pred HHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 002835 705 KERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSEQ 765 (875)
Q Consensus 705 ~e~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~v~~l~~~~~~l~~~l~~~ 765 (875)
+--+++.-|-+.|..-+--++ .-..-...++...+|--.++|+-|.-.+--+|+.|+|..
T Consensus 363 ~~eel~~~Lrsele~lp~dv~-rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~ 422 (521)
T KOG1937|consen 363 SNEELAEKLRSELEKLPDDVQ-RKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSE 422 (521)
T ss_pred hhHHHHHHHHHHHhcCCchhH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888887754211111 111222446677788888999999888888898888864
No 288
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=28.14 E-value=6e+02 Score=25.16 Aligned_cols=20 Identities=15% Similarity=0.316 Sum_probs=9.9
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 002835 744 AETDIINLKQKAKDLRVQLS 763 (875)
Q Consensus 744 ~e~~v~~l~~~~~~l~~~l~ 763 (875)
.+.++-+-++++..|..+|.
T Consensus 131 ~~~e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 131 YEHELRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34445555555555555443
No 289
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=28.05 E-value=4.1e+02 Score=35.88 Aligned_cols=22 Identities=14% Similarity=0.015 Sum_probs=14.0
Q ss_pred cccceecccCCCc--cccccccCC
Q 002835 25 LVIGIWSVKAPNG--LRRKNLSGD 46 (875)
Q Consensus 25 L~~~lq~tR~~~~--tR~~~esl~ 46 (875)
+.+.|+.+|.|.. .+..+..+.
T Consensus 4 ~kl~i~g~rSf~~~~~~~~~I~F~ 27 (1311)
T TIGR00606 4 LKMSILGVRSFGIEDKDKQIIDFF 27 (1311)
T ss_pred ceeeeeceecCCCccccceeeecc
Confidence 4567888888854 345555563
No 290
>PF15175 SPATA24: Spermatogenesis-associated protein 24
Probab=27.83 E-value=92 Score=31.49 Aligned_cols=81 Identities=27% Similarity=0.345 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhcCCC----CCCCCCCCCChhhHHHHhhhh--hhhhHHHHH-HHHHHHHHHHHHHHhh
Q 002835 695 DVARLKDQLQKERDKRTAMEAGLGEFN----GSFPIPDTIDEKTKVELGEIA--QAETDIINL-KQKAKDLRVQLSEQLE 767 (875)
Q Consensus 695 ~v~~l~~ql~~e~~~~~~le~~~~~~~----~~~~~~~~~~~~~~~~l~~i~--~~e~~v~~l-~~~~~~l~~~l~~~~~ 767 (875)
+|.=|-+||++|.. |.|.||..-. -..+-..+|=+|--+.=++|+ .-| |+.+. +.++.+|+..|.+|++
T Consensus 39 eieiL~kQl~rek~---afe~a~~~vk~k~~~Es~k~dqL~~KC~~~~~ei~c~kqe-d~LngKe~~I~eLk~~l~sQK~ 114 (153)
T PF15175_consen 39 EIEILSKQLEREKL---AFEKALGSVKSKVLQESSKKDQLITKCNEIESEIICHKQE-DILNGKENEIKELKQRLASQKQ 114 (153)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh-hhhcccccchHHHHhhhHHHHH
Confidence 57788899999875 4445542211 111111222222222223444 333 33344 6789999999999999
Q ss_pred h-ccCCCCCCcch
Q 002835 768 K-NDGFVGDSSNQ 779 (875)
Q Consensus 768 ~-~~~~~~~~~~~ 779 (875)
- |.+.+.|-..+
T Consensus 115 ~~Hk~qlsdl~Iq 127 (153)
T PF15175_consen 115 NFHKRQLSDLRIQ 127 (153)
T ss_pred HHhhccchhhHHh
Confidence 9 89999886544
No 291
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=27.79 E-value=1.5e+02 Score=31.04 Aligned_cols=63 Identities=24% Similarity=0.312 Sum_probs=45.8
Q ss_pred hhhhhhcchHHHHHHHHHhhhcchhHhhhHHHHHHHHHHH--HH-HHHHHHHHHHHHHHHHHhHHHHHH
Q 002835 649 EIQRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHER--RL-ALENDVARLKDQLQKERDKRTAME 714 (875)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--r~-~le~~v~~l~~ql~~e~~~~~~le 714 (875)
+|+..+..+.+|+..++.=-+--+-|+-+.|.||.-+|++ |. +|++...-|+++|+ .+|.-|.
T Consensus 75 a~~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e---~lr~el~ 140 (203)
T KOG3433|consen 75 AICDRKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILE---SLRWELA 140 (203)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 6777777778888887766666678999999999977754 44 78888888887443 4555433
No 292
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=27.63 E-value=1.4e+02 Score=25.73 Aligned_cols=32 Identities=41% Similarity=0.547 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 002835 684 ALHERRLALENDVARLKDQLQKERDKRTAMEA 715 (875)
Q Consensus 684 ~~~~~r~~le~~v~~l~~ql~~e~~~~~~le~ 715 (875)
.|.+|--.||.+++|++..+.+=..-|+|-++
T Consensus 25 EL~~RIa~L~aEI~R~~~~~~~K~a~r~AAea 56 (59)
T PF06698_consen 25 ELEERIALLEAEIARLEAAIAKKSASRAAAEA 56 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667778999999999999888888887665
No 293
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=27.15 E-value=9.1e+02 Score=29.12 Aligned_cols=45 Identities=16% Similarity=0.168 Sum_probs=22.5
Q ss_pred HHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002835 659 DLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQL 703 (875)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~ql 703 (875)
.++.++....-.++.|++.||...++..+.+..|++--.+|..|.
T Consensus 71 ~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F 115 (475)
T PRK10361 71 SLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQF 115 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444555566666555555555555555444444443
No 294
>PRK11546 zraP zinc resistance protein; Provisional
Probab=27.06 E-value=3.4e+02 Score=27.43 Aligned_cols=67 Identities=19% Similarity=0.285 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 002835 684 ALHERRLALENDVARLKDQLQK-ERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQL 762 (875)
Q Consensus 684 ~~~~~r~~le~~v~~l~~ql~~-e~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~v~~l~~~~~~l~~~l 762 (875)
++..-+..--.+...|++||.. .-+|++.|.+ ..-|. +-|..+-..|..|.+|+.++|+.+
T Consensus 51 ~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~------------~~pD~------~kI~aL~kEI~~Lr~kL~e~r~~~ 112 (143)
T PRK11546 51 AWQKIHNDFYAQTSALRQQLVSKRYEYNALLTA------------NPPDS------SKINAVAKEMENLRQSLDELRVKR 112 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------------CCCCH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556778888888753 3344442221 11122 223333344445566666666655
Q ss_pred HHHhhh
Q 002835 763 SEQLEK 768 (875)
Q Consensus 763 ~~~~~~ 768 (875)
..+...
T Consensus 113 ~~~~~k 118 (143)
T PRK11546 113 DIAMAE 118 (143)
T ss_pred HHHHHH
Confidence 555444
No 295
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=27.02 E-value=2e+02 Score=26.76 Aligned_cols=33 Identities=24% Similarity=0.393 Sum_probs=20.2
Q ss_pred hhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 002835 732 EKTKVELGEIAQAETDIINLKQKAKDLRVQLSE 764 (875)
Q Consensus 732 ~~~~~~l~~i~~~e~~v~~l~~~~~~l~~~l~~ 764 (875)
..+.++.+++..+-..+..|+.++..+..+|..
T Consensus 67 ~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 67 EDAEELKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666666666666666554
No 296
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.94 E-value=5.5e+02 Score=32.79 Aligned_cols=131 Identities=14% Similarity=0.191 Sum_probs=86.4
Q ss_pred cccChhHhhhcCCCCcHHHHHHHHHHHHh--C---CccCCeeecCCCHHHHHHHHHHHhcCCCCCCCCCCchhhHhhHHH
Q 002835 230 IGRPILLALEDVDGTPSFLEKAIRFIEEH--G---VQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHIIADCVKY 304 (875)
Q Consensus 230 FGvpLe~ll~~~~~VP~~L~kcI~~Le~~--G---l~~EGIFR~sG~~~~V~~Lk~~ld~g~~~~~~~~D~h~VAslLK~ 304 (875)
|-.+|-.++.....+-.++..+|..|... + ....-.|-.+-+...++.||-.+-.. +....+++.|--=|+.
T Consensus 323 i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~---La~esni~~ILrE~q~ 399 (968)
T KOG1060|consen 323 IAKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSN---LANESNISEILRELQT 399 (968)
T ss_pred HHHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHH---HhhhccHHHHHHHHHH
Confidence 44455556666677888888888777652 2 33455667888888888888776542 1122344444444445
Q ss_pred HHhhCCCC-----------------CCChhhHHHHHHHHhcCc----hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHH
Q 002835 305 VIRELPSS-----------------PVPASCCNALLEARRTDR----GSRVSAMRTAILETFPEPNRKLLQRILMMMQTV 363 (875)
Q Consensus 305 fLReLPeP-----------------Llp~~ly~~~i~a~~~~~----~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~V 363 (875)
|.+.-+.. =++..+.+.++...+..+ .+-+..|+.+|. .=|..|..+|.+|.++|..+
T Consensus 400 YI~s~d~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq-~~p~~h~~ii~~La~lldti 478 (968)
T KOG1060|consen 400 YIKSSDRSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQ-KDPAEHLEILFQLARLLDTI 478 (968)
T ss_pred HHhcCchhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhcccchhHHHHHHHHHHHHh-hChHHHHHHHHHHHHHhhhh
Confidence 55544422 134456666677666555 677888999886 89999999999999998655
Q ss_pred H
Q 002835 364 A 364 (875)
Q Consensus 364 a 364 (875)
.
T Consensus 479 ~ 479 (968)
T KOG1060|consen 479 L 479 (968)
T ss_pred h
Confidence 3
No 297
>PRK03918 chromosome segregation protein; Provisional
Probab=26.84 E-value=5.7e+02 Score=32.52 Aligned_cols=15 Identities=13% Similarity=-0.121 Sum_probs=7.5
Q ss_pred cCCCccccceeeccc
Q 002835 370 NRMSTSAVAACMAPL 384 (875)
Q Consensus 370 NkMta~NLAi~FgPt 384 (875)
|-++..+..+.|.|-
T Consensus 10 nf~~~~~~~i~f~~g 24 (880)
T PRK03918 10 NFRSHKSSVVEFDDG 24 (880)
T ss_pred CccCccCceEecCCC
Confidence 333444445666653
No 298
>PRK10884 SH3 domain-containing protein; Provisional
Probab=26.73 E-value=3e+02 Score=29.35 Aligned_cols=53 Identities=17% Similarity=0.303 Sum_probs=23.4
Q ss_pred hhhhhhcchHHHHHHHHHh----hhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002835 649 EIQRLEDTKSDLQRKIADE----VKGNEILEASLESRKKALHERRLALENDVARLKDQLQK 705 (875)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~ql~~ 705 (875)
.+++||..-.+|+.+++.= -...+.||-.++.+++...+ |+++-++|++||+.
T Consensus 94 rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~----L~~~n~~L~~~l~~ 150 (206)
T PRK10884 94 RVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVING----LKEENQKLKNQLIV 150 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 3444554444455444321 12223344444444433222 55555666555554
No 299
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=26.73 E-value=8.4e+02 Score=26.40 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002835 681 RKKALHERRLALENDVARLKDQ 702 (875)
Q Consensus 681 ~~~~~~~~r~~le~~v~~l~~q 702 (875)
|++.|+.+.-.+..++++|+++
T Consensus 53 ~~k~~e~~~~~~~~~~~k~e~~ 74 (225)
T COG1842 53 RQKQLERKLEEAQARAEKLEEK 74 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443
No 300
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=26.59 E-value=5.5e+02 Score=34.24 Aligned_cols=57 Identities=30% Similarity=0.357 Sum_probs=27.0
Q ss_pred hhhhhhcchHHHHHHHHHhhhcch-------hHhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 002835 649 EIQRLEDTKSDLQRKIADEVKGNE-------ILEASLESRKKALHER---RLALENDVARLKDQLQK 705 (875)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~---r~~le~~v~~l~~ql~~ 705 (875)
.|++||.....++.++..-..... .++..++.+++.+.++ ...|++.++.+..+..+
T Consensus 296 ~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e 362 (1163)
T COG1196 296 EIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEE 362 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 455566666666555543333322 3445555555555554 33444444444433333
No 301
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=26.42 E-value=1.3e+02 Score=37.41 Aligned_cols=41 Identities=27% Similarity=0.494 Sum_probs=27.1
Q ss_pred HHhhhcchhHhhhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q 002835 665 ADEVKGNEILEASLESR-----KKALHERRLALENDVARLKDQLQK 705 (875)
Q Consensus 665 ~~~~~~~~~~~~~~~~~-----~~~~~~~r~~le~~v~~l~~ql~~ 705 (875)
-+-+|||-.+-...+.. ++.--.+|..|+++|+||+..++.
T Consensus 52 V~~iRgNl~~~~~~~~~~~~~~~e~~~~~r~~L~~everLraei~~ 97 (632)
T PF14817_consen 52 VRKIRGNLLWYGHQQSKERKKSRENEARRRRELEKEVERLRAEIQE 97 (632)
T ss_pred HHHHHcceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35578887665544433 222333789999999999987653
No 302
>PRK12705 hypothetical protein; Provisional
Probab=26.13 E-value=2.2e+02 Score=34.38 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002835 683 KALHERRLALENDVARLKDQLQK 705 (875)
Q Consensus 683 ~~~~~~r~~le~~v~~l~~ql~~ 705 (875)
+..+..|..+|+++...+..+|.
T Consensus 59 ~~~~~~~~~~e~e~~~~~~~~~~ 81 (508)
T PRK12705 59 ELLLRERNQQRQEARREREELQR 81 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777777776666644
No 303
>PRK11281 hypothetical protein; Provisional
Probab=25.85 E-value=3.3e+02 Score=36.16 Aligned_cols=117 Identities=21% Similarity=0.222 Sum_probs=0.0
Q ss_pred hhhhhhhcchHHHHHHHHHhhhcchhHhhhHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhHHHHHHhhhc
Q 002835 648 VEIQRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERR---------LALENDVARLKDQLQKERDKRTAMEAGLG 718 (875)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r---------~~le~~v~~l~~ql~~e~~~~~~le~~~~ 718 (875)
..|++.+..-.+|+.+++.=-+.=...|+.|++=|++...-- .+||+....++.+||.+..--+.+.+
T Consensus 73 ~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~Ns--- 149 (1113)
T PRK11281 73 DKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNS--- 149 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q ss_pred CCCCCCCCCCCCChhhHHHHhhhhhh-------------------hhHHHHHHHHHHHHHHHHHHHhhhccC
Q 002835 719 EFNGSFPIPDTIDEKTKVELGEIAQA-------------------ETDIINLKQKAKDLRVQLSEQLEKNDG 771 (875)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~l~~i~~~-------------------e~~v~~l~~~~~~l~~~l~~~~~~~~~ 771 (875)
++....+.|+.+|+.+.+...- ++-...|.-+...|..|...+|+.-.|
T Consensus 150 ----qLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~~~~~~~~~l~~ 217 (1113)
T PRK11281 150 ----QLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEG 217 (1113)
T ss_pred ----HHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 304
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=25.60 E-value=4.3e+02 Score=32.81 Aligned_cols=52 Identities=27% Similarity=0.433 Sum_probs=33.5
Q ss_pred hhhhhhcchHHHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002835 649 EIQRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQLQ 704 (875)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~ql~ 704 (875)
+++.|..-+..|..++...++.|..|-.-...++ +|=..||..|.++++++.
T Consensus 88 E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqE----erL~ELE~~le~~~e~~~ 139 (617)
T PF15070_consen 88 EAEHLRKELESLEEQLQAQVENNEQLSRLNQEQE----ERLAELEEELERLQEQQE 139 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 4566766677777777778888887733222222 233348888888888764
No 305
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=25.54 E-value=7.4e+02 Score=30.35 Aligned_cols=16 Identities=44% Similarity=0.520 Sum_probs=7.7
Q ss_pred hhhhhhhHHHHHHHHH
Q 002835 740 EIAQAETDIINLKQKA 755 (875)
Q Consensus 740 ~i~~~e~~v~~l~~~~ 755 (875)
.|..+|.++..|.+++
T Consensus 221 ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 221 RIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555444444
No 306
>TIGR02559 HrpB7 type III secretion protein HrpB7. This family of genes is found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=25.46 E-value=7.4e+02 Score=25.54 Aligned_cols=99 Identities=18% Similarity=0.166 Sum_probs=62.1
Q ss_pred HHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhH------HH
Q 002835 664 IADEVKGNEILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTK------VE 737 (875)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~~~~~~~~~~~------~~ 737 (875)
|.---+-++.||+.|.-...+|.++=-+|++-+....- +.-.|+......-.|..|.- |.+|++-.+ .+
T Consensus 10 ~~rr~r~~~rL~a~l~a~R~al~~a~a~la~~~~~~~a---~~~~l~~~~arid~m~tG~~--~f~id~~la~~ryr~vl 84 (158)
T TIGR02559 10 LERKTRRDARLRAELAERRAALQSADRELAEKVSQAEA---KADRLHRHAARIDDLATGTA--SFTIDAYLQCRAYRDVL 84 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCC--cccHHHHHHHHHHHHHH
Confidence 33334667778887777666666655555544443332 33345544444445655533 233443322 34
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 002835 738 LGEIAQAETDIINLKQKAKDLRVQLSEQLE 767 (875)
Q Consensus 738 l~~i~~~e~~v~~l~~~~~~l~~~l~~~~~ 767 (875)
.+..+++|+.+..|.+-|...+.+|.-.+.
T Consensus 85 ~~~~~~aE~~~aaa~~al~~~~~~laa~~r 114 (158)
T TIGR02559 85 EAHLGAAEQAEAAARAALQALAAALAAKKR 114 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999999999987654
No 307
>PHA03187 UL14 tegument protein; Provisional
Probab=25.36 E-value=2e+02 Score=32.08 Aligned_cols=81 Identities=22% Similarity=0.278 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 002835 685 LHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSE 764 (875)
Q Consensus 685 ~~~~r~~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~v~~l~~~~~~l~~~l~~ 764 (875)
..+||+.|+. +..++-+-|+|-|.. +-.|.+...--|....+--..+-.+|.--...-+-|...+||+..++..+..
T Consensus 7 ~RRRRl~LaE--a~~RE~IyKaRTLdL-lreGVd~~DPaFV~AFTSAKeA~~dl~rqLRS~aRveaVeQKar~Iq~rVEe 83 (322)
T PHA03187 7 SRRRRLQLEE--AYQREMIFKMRTLDL-VREGVDKRSPAFVRAFTSAKEASLDLDRYMQAHSRVGRVEQNARALAQRVEA 83 (322)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHH-HHcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4468899988 899999999999876 5556655544443333333445556666666677788889999999998888
Q ss_pred Hhhh
Q 002835 765 QLEK 768 (875)
Q Consensus 765 ~~~~ 768 (875)
|..-
T Consensus 84 Q~a~ 87 (322)
T PHA03187 84 QAAV 87 (322)
T ss_pred HHHH
Confidence 7654
No 308
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.32 E-value=4.1e+02 Score=31.21 Aligned_cols=51 Identities=24% Similarity=0.423 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 002835 694 NDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQ 761 (875)
Q Consensus 694 ~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~v~~l~~~~~~l~~~ 761 (875)
.+.--||+||++|+-++.-||--| +-+.++-...+|-++.||-++.-||.|
T Consensus 441 ~ei~~L~eqle~e~~~~~~le~ql-----------------~~~ve~c~~~~aS~~slk~e~erl~qq 491 (542)
T KOG0993|consen 441 KEIQSLQEQLEKERQSEQELEWQL-----------------DDDVEQCSNCDASFASLKVEPERLHQQ 491 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 345679999999999999998744 557788888899999999999999844
No 309
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=25.29 E-value=1.7e+03 Score=29.52 Aligned_cols=76 Identities=13% Similarity=0.106 Sum_probs=37.2
Q ss_pred CCCchhhHhhHHHHHhhCCCCCCC--hhhHHHHHHHHhcCc---hH-HHHHHHHHHHhhCChhHHHHHH--HHHHHHHHH
Q 002835 292 EEDAHIIADCVKYVIRELPSSPVP--ASCCNALLEARRTDR---GS-RVSAMRTAILETFPEPNRKLLQ--RILMMMQTV 363 (875)
Q Consensus 292 ~~D~h~VAslLK~fLReLPePLlp--~~ly~~~i~a~~~~~---~e-ri~~i~~LI~~~LP~~Nr~lL~--~Ll~~L~~V 363 (875)
..++|++|.+|--.-+-.|+=.+. -...+.+.....+.+ .. |+...+ ++.+ -.|+.++. .|+.+|+.+
T Consensus 680 y~~i~~lA~llaGL~~y~~~fvi~VID~vlE~Ir~glEin~~~~nQrriA~ar-yL~E---Lynfemvds~vIl~tLy~~ 755 (1128)
T KOG2051|consen 680 YQNIHALASLLAGLSSYHPEFVIHVIDHVLEDIRPGLEINDYVSNQRRIALAR-YLGE---LYNFEMVDSDVILNTLYHL 755 (1128)
T ss_pred cccHHHHHHHHHHHHhhchhhhhhhHHHHHHHHHhhhhcCcHHHHHHHHHHHH-HHHH---HhhhhhhhHHHHHHHHHHH
Confidence 457888887776555555542221 112233333333333 22 333333 2332 23444443 367777777
Q ss_pred HHhhcccC
Q 002835 364 ASSKNQNR 371 (875)
Q Consensus 364 a~~S~~Nk 371 (875)
..+...|.
T Consensus 756 i~~g~~~~ 763 (1128)
T KOG2051|consen 756 ISLGHFEN 763 (1128)
T ss_pred hcccccCC
Confidence 77666554
No 310
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=25.04 E-value=62 Score=40.63 Aligned_cols=31 Identities=26% Similarity=0.628 Sum_probs=0.0
Q ss_pred EEEEeeeEeecCCCCccCceeEEEEEeCCeEEE
Q 002835 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVF 116 (875)
Q Consensus 84 v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~y 116 (875)
++|+|-||....-. +.|..+||||....|+|
T Consensus 475 svk~GiLy~kd~vd--heWt~h~fvlt~~kl~y 505 (1267)
T KOG1264|consen 475 SVKQGILYMKDPVD--HEWTRHYFVLTDAKLSY 505 (1267)
T ss_pred hhhcceEEEecCCC--CceeeeEEEEecceeEe
No 311
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=24.90 E-value=5.4e+02 Score=29.91 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=20.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHH
Q 002835 739 GEIAQAETDIINLKQKAKDLRVQLS 763 (875)
Q Consensus 739 ~~i~~~e~~v~~l~~~~~~l~~~l~ 763 (875)
.+|+.+++.+..+++++..+..+|.
T Consensus 227 ~~~~~~~~~l~~~~~~l~~~~~~l~ 251 (421)
T TIGR03794 227 KELETVEARIKEARYEIEELENKLN 251 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677888888888888888888885
No 312
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=24.59 E-value=5e+02 Score=30.36 Aligned_cols=30 Identities=20% Similarity=0.120 Sum_probs=15.9
Q ss_pred CCCCCCCCCccCCCcccccccccCCCCCcC
Q 002835 825 SFPNKLPPQNQQVDSMHTVTSRSTAPINSR 854 (875)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 854 (875)
|-+-...|--+|+.+-+-.+-|-++.-|+-
T Consensus 349 ~tt~r~~~~t~q~~~Greyv~rv~sagnyv 378 (499)
T COG4372 349 HTTRRRRPATRQSPSGREYVTRVTSAGNYV 378 (499)
T ss_pred cchhhhhhhhccCCCCCCeeEeecccCccc
Confidence 333444444555655555555666555553
No 313
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=23.97 E-value=6.3e+02 Score=26.72 Aligned_cols=102 Identities=17% Similarity=0.187 Sum_probs=52.1
Q ss_pred hhhhhhcchHHHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCC
Q 002835 649 EIQRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPD 728 (875)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~~~~ 728 (875)
.|..|..--.+++.+...--|.=+.+++.-. .|.+==..++++|..|+.+|..=..-..+|.+.-..- .
T Consensus 28 lIksLKeei~emkk~e~~~~k~m~ei~~eN~----~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl-------~ 96 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKEERNEKLMAEISQENK----RLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARL-------K 96 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H
Confidence 4555555555555544433333333333322 3333334578899999999987666666665532210 1
Q ss_pred CCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 002835 729 TIDEKTKVELGEIAQAETDIINLKQKAKDLRVQ 761 (875)
Q Consensus 729 ~~~~~~~~~l~~i~~~e~~v~~l~~~~~~l~~~ 761 (875)
.+....+.+--+--.++-.+.+|+++-.+|...
T Consensus 97 ~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~k 129 (201)
T PF13851_consen 97 ELEKELKDLKWEHEVLEQRFEKLEQERDELYRK 129 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123333344444455555555555555555543
No 314
>KOG4270 consensus GTPase-activator protein [Signal transduction mechanisms]
Probab=23.69 E-value=75 Score=38.79 Aligned_cols=131 Identities=15% Similarity=-0.016 Sum_probs=88.5
Q ss_pred cHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcC--CCCCCCCCCchhhHhhHHHHHhhCCCCCCChhhHHHH
Q 002835 245 PSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQG--KTEFSPEEDAHIIADCVKYVIRELPSSPVPASCCNAL 322 (875)
Q Consensus 245 P~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g--~~~~~~~~D~h~VAslLK~fLReLPePLlp~~ly~~~ 322 (875)
+.-..+|..+...++....|.|+.+| ..+..++..-+.+ ++.+..+...+++.++++.+++.+ +|.++..|...
T Consensus 59 ~~~~~~~~~~~~~~s~~~~~~~~~~~--~~~~~~~~e~e~~~~kie~~~d~~~~~~~~f~~~~~~~~--f~~~~~e~q~~ 134 (577)
T KOG4270|consen 59 DMDSEQLRLFQAQKSSGEEGLFRLPG--AKIDTLKEEEEECGMKIEQPTDQRHADHVTFDRKEGEYL--FLGLPVEFQPD 134 (577)
T ss_pred hcchhhhhhhhhhhhhhhccccccCc--chhhhhhchHHhhcCccccCcchhhhhhhhhhhhcchhh--hccchhhhccc
Confidence 44467888888889999999999999 4455555554443 345556667899999999999998 77777666655
Q ss_pred HHHHhcCc-----hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCccccceeecccccCC
Q 002835 323 LEARRTDR-----GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRP 388 (875)
Q Consensus 323 i~a~~~~~-----~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NLAi~FgPtLLrp 388 (875)
+....... .....+++. ...|..|+ +-+++.||... ..+.|.-.+..-+|.++.-.+
T Consensus 135 ~~rrals~~~~vfgv~~~s~Q~---s~~~~~n~--vp~i~~l~~~~----~l~~e~Gl~eEGlFRi~~~~s 196 (577)
T KOG4270|consen 135 YHRRALSASETVFGVSTEAMQL---SYDPRGNF--VPLILHLLQSG----RLLLEGGLKEEGLFRINGEAS 196 (577)
T ss_pred cccccccchhhhhcchHHhhhc---ccccCCCc--chhhhHhhhhh----hhhhhcCccccceeccCCCch
Confidence 54433222 112333433 35677787 67777777664 456667777777777776553
No 315
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=23.40 E-value=6.3e+02 Score=29.32 Aligned_cols=106 Identities=18% Similarity=0.213 Sum_probs=61.7
Q ss_pred hhcchHHHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCC-------
Q 002835 653 LEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFP------- 725 (875)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~------- 725 (875)
|+.+.++|+..-. +.|+.|. +|-.....-+..||....+..+++..=-..-..|+.|+..-.+++.
T Consensus 231 l~~~~~dl~~Q~~---~vn~al~----~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~ 303 (384)
T PF03148_consen 231 LEQTANDLRAQAD---AVNAALR----KRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLE 303 (384)
T ss_pred HHHHHHHHHHHHH---HHHHHHH----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 4445555555544 4555544 3444444445555555555555544433344455555544444331
Q ss_pred ------CC-CCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 002835 726 ------IP-DTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSEQ 765 (875)
Q Consensus 726 ------~~-~~~~~~~~~~l~~i~~~e~~v~~l~~~~~~l~~~l~~~ 765 (875)
.. ..-|.-...++.||..++..+..|.+++...+..|+.=
T Consensus 304 ~R~~RP~vElcrD~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L 350 (384)
T PF03148_consen 304 NRTQRPNVELCRDPPQYGLIEEVKELRESIEALQEKLDEAEASLQKL 350 (384)
T ss_pred hHhcCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 23455556677999999999999999999888877663
No 316
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=23.33 E-value=7.1e+02 Score=27.56 Aligned_cols=78 Identities=15% Similarity=0.230 Sum_probs=41.8
Q ss_pred hhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhH
Q 002835 668 VKGNEILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETD 747 (875)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~ 747 (875)
.+.++|=+..++..+.++...+.+|++-..++..++..- +..|..... ...-.++..++++
T Consensus 127 ~~~g~iS~~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~---~~~~~~~~~----------------~~~~~~~~~~~~~ 187 (327)
T TIGR02971 127 FRDGAVSASDLDSKALKLRTAEEELEEALASRSEQIDGA---RAALASLAE----------------EVRETDVDLAQAE 187 (327)
T ss_pred HHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhh----------------cccHHHHHHHHHH
Confidence 345566666666666666555555555544444222221 111111000 0012457778888
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002835 748 IINLKQKAKDLRVQLSE 764 (875)
Q Consensus 748 v~~l~~~~~~l~~~l~~ 764 (875)
+..++.++.....+|..
T Consensus 188 ~~~~~~~l~~a~~~l~~ 204 (327)
T TIGR02971 188 VKSALEAVQQAEALLEL 204 (327)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 88888888888777754
No 317
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=23.14 E-value=2.9e+02 Score=32.79 Aligned_cols=61 Identities=25% Similarity=0.313 Sum_probs=34.7
Q ss_pred hhcchHHHHHHHHHhhhcchhHhhh---HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHhhh
Q 002835 653 LEDTKSDLQRKIADEVKGNEILEAS---LESRKKALHERRLALENDV-ARLKDQLQKERDKRTAMEAGL 717 (875)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~r~~le~~v-~~l~~ql~~e~~~~~~le~~~ 717 (875)
.|..+++.|.-+ |-|-.||-+|.. +|| ..|.--++. |++| +.|.+||+.||+||+.++.-|
T Consensus 501 ~eTll~niq~ll-kva~dnar~qekQiq~Ek--~ELkmd~lr-erelreslekql~~ErklR~~~qkr~ 565 (641)
T KOG3915|consen 501 IETLLTNIQGLL-KVAIDNARAQEKQIQLEK--TELKMDFLR-ERELRESLEKQLAMERKLRAIVQKRL 565 (641)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666544 345678877642 222 222222221 3333 357889999999998777654
No 318
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=23.09 E-value=4.7e+02 Score=25.26 Aligned_cols=26 Identities=42% Similarity=0.602 Sum_probs=9.8
Q ss_pred hhhhhcchHHHHHHHHHhhhcchhHhhhHHHHH
Q 002835 650 IQRLEDTKSDLQRKIADEVKGNEILEASLESRK 682 (875)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (875)
-.+||+.+++||++++ -||-+||-=|
T Consensus 4 ~~~l~as~~el~n~La-------~Le~slE~~K 29 (107)
T PF09304_consen 4 KEALEASQNELQNRLA-------SLERSLEDEK 29 (107)
T ss_dssp ----------HHHHHH-------HHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHH-------HHHHHHHHHH
Confidence 3578899999998874 4555555444
No 319
>PRK04863 mukB cell division protein MukB; Provisional
Probab=22.94 E-value=8.8e+02 Score=33.47 Aligned_cols=13 Identities=23% Similarity=0.631 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 002835 693 ENDVARLKDQLQK 705 (875)
Q Consensus 693 e~~v~~l~~ql~~ 705 (875)
+.++..|+++|++
T Consensus 354 ~~~LeELee~Lee 366 (1486)
T PRK04863 354 QADLEELEERLEE 366 (1486)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444433
No 320
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=22.93 E-value=5.5e+02 Score=32.77 Aligned_cols=56 Identities=25% Similarity=0.242 Sum_probs=26.8
Q ss_pred chhhhhhhhhcchHHHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002835 645 DNEVEIQRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQLQ 704 (875)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~ql~ 704 (875)
+-|..|++||..+.+++.+..+ =+.+.+.+++.++.|.+.+.+||+.-.++.+.++
T Consensus 512 ~~~~li~~L~~~~~~~e~~~~~----~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~ 567 (771)
T TIGR01069 512 EINVLIEKLSALEKELEQKNEH----LEKLLKEQEKLKKELEQEMEELKERERNKKLELE 567 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777766654421 1123333444444444444444444444333333
No 321
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=22.51 E-value=5.3e+02 Score=33.89 Aligned_cols=86 Identities=22% Similarity=0.276 Sum_probs=0.0
Q ss_pred hhhhcchHHHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCC
Q 002835 651 QRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTI 730 (875)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~~~~~~ 730 (875)
++++..+.+|+.+-. |+-.=.+.+...+.+-+++..++-.||..|+.+++|+
T Consensus 337 ~Ei~~~r~~~~~~~r-e~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~--------------------------- 388 (1074)
T KOG0250|consen 337 EEIEEARKDLDDLRR-EVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQT--------------------------- 388 (1074)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------
Q ss_pred ChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 002835 731 DEKTKVELGEIAQAETDIINLKQKAKDLRVQLSEQLE 767 (875)
Q Consensus 731 ~~~~~~~l~~i~~~e~~v~~l~~~~~~l~~~l~~~~~ 767 (875)
++..=.++..+|-.+..|+++|..|+.|+++-|+
T Consensus 389 ---~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~ 422 (1074)
T KOG0250|consen 389 ---NNELGSELEERENKLEQLKKEVEKLEEQINSLRE 422 (1074)
T ss_pred ---HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 322
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=22.44 E-value=82 Score=39.33 Aligned_cols=16 Identities=25% Similarity=0.461 Sum_probs=6.8
Q ss_pred HHHHHHhhcccccCCC
Q 002835 423 IVITLLEEYDKIFGEG 438 (875)
Q Consensus 423 IVe~LIeny~~IF~e~ 438 (875)
||..+.+.-..+|.++
T Consensus 851 ImKTI~dDP~~Ffe~G 866 (960)
T KOG1189|consen 851 IMKTITDDPIAFFEDG 866 (960)
T ss_pred HhhhhccCHHHHHhcC
Confidence 4444444444444433
No 323
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=22.39 E-value=6.9e+02 Score=33.31 Aligned_cols=60 Identities=13% Similarity=0.178 Sum_probs=38.7
Q ss_pred hhhhhhhhhcchHHHHHHH---HHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002835 646 NEVEIQRLEDTKSDLQRKI---ADEVKGNEILEASLESRKKALHERRLALENDVARLKDQLQK 705 (875)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~ql~~ 705 (875)
.++....|++-..-|..++ ..|.-+|..+|.=+..|-+-+..+-.+||+.+..||+++-.
T Consensus 171 ~~a~~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~ 233 (1109)
T PRK10929 171 AQAQLTALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNS 233 (1109)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555444444444 34556777777777666666666666699999999988754
No 324
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=22.38 E-value=1.3e+03 Score=27.14 Aligned_cols=56 Identities=18% Similarity=0.275 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 002835 692 LENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRV 760 (875)
Q Consensus 692 le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~v~~l~~~~~~l~~ 760 (875)
+-+|+.-+-+.||+||.-..-||.=|| +-++--..||..+-.+++..|.||+=+..
T Consensus 242 ~~~e~~~~~~~LqEEr~R~erLEeqlN-------------d~~elHq~Ei~~LKqeLa~~EEK~~Yqs~ 297 (395)
T PF10267_consen 242 YQREYQFILEALQEERYRYERLEEQLN-------------DLTELHQNEIYNLKQELASMEEKMAYQSY 297 (395)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 556777778888888888887887443 35555666666666666666666654433
No 325
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=22.31 E-value=3.4e+02 Score=29.77 Aligned_cols=9 Identities=56% Similarity=0.973 Sum_probs=4.9
Q ss_pred HHHHHHHHH
Q 002835 692 LENDVARLK 700 (875)
Q Consensus 692 le~~v~~l~ 700 (875)
||+|+.+++
T Consensus 25 LE~DL~~~~ 33 (248)
T PF08172_consen 25 LENDLAKVQ 33 (248)
T ss_pred HHHHHHHHh
Confidence 555555544
No 326
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=22.16 E-value=6.2e+02 Score=33.75 Aligned_cols=20 Identities=30% Similarity=0.503 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 002835 748 IINLKQKAKDLRVQLSEQLE 767 (875)
Q Consensus 748 v~~l~~~~~~l~~~l~~~~~ 767 (875)
+.+|.....++-.++-+++.
T Consensus 562 ~~kl~~~~~e~~~~iq~~~e 581 (1317)
T KOG0612|consen 562 AGKLRKHSKELSKQIQQELE 581 (1317)
T ss_pred HhhHhhhhhhhhHHHHHHhh
Confidence 55666666666677766666
No 327
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=22.16 E-value=1.3e+02 Score=37.15 Aligned_cols=66 Identities=17% Similarity=0.163 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 002835 693 ENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSEQL 766 (875)
Q Consensus 693 e~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~v~~l~~~~~~l~~~l~~~~ 766 (875)
|-+--+|.+||++|.++-.|-.+..-+-.... .+..-+++-+-|++--| -||||+.+=..||++.|
T Consensus 820 e~E~q~l~~ql~qEle~l~ayq~k~k~~~e~q-----~~re~~ele~rvslrra---~lEqkieeE~~~~~~~R 885 (948)
T KOG0577|consen 820 EAECQVLREQLEQELELLNAYQSKIKMQAEEQ-----HERELRELEQRVSLRRA---LLEQKIEEELAQLQTER 885 (948)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhhhhHH---HHHHHHHHHHHHhcccc
Confidence 44566899999999999999888765544322 22222333333343333 39999999999999998
No 328
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=22.13 E-value=4.8e+02 Score=24.27 Aligned_cols=66 Identities=26% Similarity=0.323 Sum_probs=47.4
Q ss_pred hhhhhhcchHHHHHHHHHhhhcchhHhhhHHHH-----HH-----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 002835 649 EIQRLEDTKSDLQRKIADEVKGNEILEASLESR-----KK-----ALHERRLALENDVARLKDQLQKERDKRTAME 714 (875)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-----~~~~~r~~le~~v~~l~~ql~~e~~~~~~le 714 (875)
+|.+++....+++..+.+-++.=++|+.-+-|- |. |.-...-+|..|+.+|..|+-+-.++-..|.
T Consensus 4 EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~ 79 (96)
T PF08647_consen 4 ELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLK 79 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 678888888888888888777777766544332 11 4445556788999999999888877766554
No 329
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=22.02 E-value=3.1e+02 Score=24.22 Aligned_cols=55 Identities=24% Similarity=0.372 Sum_probs=33.6
Q ss_pred hhhhcchHHHHHHHHHhhhcchhHhhhHHH----HHHH---HH---HHHHHHHHHHHHHHHHHHH
Q 002835 651 QRLEDTKSDLQRKIADEVKGNEILEASLES----RKKA---LH---ERRLALENDVARLKDQLQK 705 (875)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~---~~---~~r~~le~~v~~l~~ql~~ 705 (875)
++||+.+..||.++.-=.+-|.+.|.-+.. |-.+ |+ ..=..|=.+|..|+++|+.
T Consensus 1 ~~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 1 QKLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999997767777776654432 2222 22 2222355666666666543
No 330
>PRK15361 pathogenicity island 2 effector protein SseD; Provisional
Probab=21.64 E-value=96 Score=32.52 Aligned_cols=51 Identities=27% Similarity=0.255 Sum_probs=29.4
Q ss_pred CCccccceee-cccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 002835 372 MSTSAVAACM-APLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKI 434 (875)
Q Consensus 372 Mta~NLAi~F-gPtLLrp~~s~~~e~e~d~~~~g~~~~qL~~a~~~~~~~~~IVe~LIeny~~I 434 (875)
|.+.|+|.|+ +|+|+.|...+.+..+. |.+....-.+.+|+.-|.+-+.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------md~~s~l~~fddii~kL~eLfKKL 52 (195)
T PRK15361 1 MEASNVALVLPAPSLLTPSSTPSPSGEG------------MGTESMLLLFDDIWMKLMELAKKL 52 (195)
T ss_pred CCccceeeeecCccccCCCCCCCCCccc------------CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888765 89999987544433332 222233334456666666555544
No 331
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=21.58 E-value=8.1e+02 Score=27.19 Aligned_cols=36 Identities=22% Similarity=0.492 Sum_probs=17.5
Q ss_pred hHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002835 673 ILEASLESRKKALHERRLALENDVARLKDQLQKERD 708 (875)
Q Consensus 673 ~~~~~~~~~~~~~~~~r~~le~~v~~l~~ql~~e~~ 708 (875)
.|+...+...+.+......+|..+..|.++|+.|+.
T Consensus 222 ~l~e~~~~~~~~le~~~~~~ee~~~~L~ekme~e~~ 257 (297)
T PF02841_consen 222 KLEEKQKEQEQMLEQQERSYEEHIKQLKEKMEEERE 257 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444555555555555555555543
No 332
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=21.25 E-value=6e+02 Score=28.23 Aligned_cols=39 Identities=23% Similarity=0.300 Sum_probs=20.9
Q ss_pred HhhhcchhHhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002835 666 DEVKGNEILEAS-----LESRKKALHERRLALENDVARLKDQLQ 704 (875)
Q Consensus 666 ~~~~~~~~~~~~-----~~~~~~~~~~~r~~le~~v~~l~~ql~ 704 (875)
++.-+++|||+. -|+..++...+.-++|++-..|++++.
T Consensus 185 ~~~~~~~ilq~d~~L~~~ek~~~~~~~k~e~~e~e~~~l~e~~~ 228 (297)
T PF02841_consen 185 KESMENSILQADQQLTEKEKEIEEEQAKAEAAEKEKEKLEEKQK 228 (297)
T ss_dssp CHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666643 234444555555566666666665543
No 333
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=21.21 E-value=2.6e+02 Score=31.08 Aligned_cols=29 Identities=28% Similarity=0.287 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhcC
Q 002835 691 ALENDVARLKDQLQKERDKRTAMEAGLGE 719 (875)
Q Consensus 691 ~le~~v~~l~~ql~~e~~~~~~le~~~~~ 719 (875)
.|=+.=+.|-+.|.+|.++|.+...++..
T Consensus 128 eit~~GA~LydlL~kE~~lr~~R~~a~~r 156 (267)
T PF10234_consen 128 EITQRGASLYDLLGKEVELREERQRALAR 156 (267)
T ss_pred HHHHHHHHHHHHHhchHhHHHHHHHHHcC
Confidence 36677788999999999999988888763
No 334
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=21.12 E-value=6.5e+02 Score=33.46 Aligned_cols=72 Identities=19% Similarity=0.339 Sum_probs=44.5
Q ss_pred hhhhhcchHHHHHHHHHhhhcchhHhh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCC
Q 002835 650 IQRLEDTKSDLQRKIADEVKGNEILEA-----SLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGS 723 (875)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~r~~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~ 723 (875)
.++.|..+..+..|++ ++| |...+. .+|++--++.|.+--|=+..++|.+++++.+.-+..+|++++.+...
T Consensus 365 ~~k~e~~~~~~~e~~~-~~k-n~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~ 441 (1293)
T KOG0996|consen 365 VEKNEAVKKEIKERAK-ELK-NKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIE 441 (1293)
T ss_pred HHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhH
Confidence 4556666666655543 444 223332 34444445555666666777778888888888888888877665543
No 335
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=20.99 E-value=3.8e+02 Score=23.90 Aligned_cols=44 Identities=25% Similarity=0.401 Sum_probs=30.9
Q ss_pred HHHHHHHHhhhcchhHhhhHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 002835 659 DLQRKIADEVKGNEILEASLE---SRKKALHERRLALENDVARLKDQ 702 (875)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~r~~le~~v~~l~~q 702 (875)
.|..||..=+-..+.||-.++ ..+.+|.+-+.+|+++..+|++.
T Consensus 8 ~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e 54 (72)
T PF06005_consen 8 QLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQE 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 466667666666667775444 44457788899999999988744
No 336
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=20.98 E-value=3e+02 Score=25.49 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=27.3
Q ss_pred CCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 002835 728 DTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSEQLEKNDGFV 773 (875)
Q Consensus 728 ~~~~~~~~~~l~~i~~~e~~v~~l~~~~~~l~~~l~~~~~~~~~~~ 773 (875)
..|++..++.||+ ...-|+.++.....+|.+=|++|.-++
T Consensus 31 ~eLs~e~R~~lE~------E~~~l~~~l~~~E~eL~~LrkENrK~~ 70 (85)
T PF15188_consen 31 RELSPEARRSLEK------ELNELKEKLENNEKELKLLRKENRKSM 70 (85)
T ss_pred cCCChHHHHHHHH------HHHHHHHHhhccHHHHHHHHHhhhhhH
Confidence 5578888888873 344567777777777777777765543
No 337
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=20.97 E-value=4.7e+02 Score=25.35 Aligned_cols=62 Identities=15% Similarity=0.382 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHH
Q 002835 685 LHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLR 759 (875)
Q Consensus 685 ~~~~r~~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~v~~l~~~~~~l~ 759 (875)
+|..=-.|-++|.+|++-+.+=-+.-+ -+ -..+-.++-++.+.|+.+|.++..||..|.+..
T Consensus 6 ~~~q~~~l~~~v~~lRed~r~SEdrsa-----~S--------Ra~mhrRlDElV~Rv~~lEs~~~~lk~dVsemK 67 (112)
T PF07439_consen 6 LHQQLGTLNAEVKELREDIRRSEDRSA-----AS--------RASMHRRLDELVERVTTLESSVSTLKADVSEMK 67 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-----hh--------hHHHHHhHHHHHHHHHHHHHHHHHHHhhHHhcc
Confidence 455555677888888877652111111 01 122445777889999999999999999988753
No 338
>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.
Probab=20.96 E-value=6.5e+02 Score=24.43 Aligned_cols=37 Identities=11% Similarity=0.257 Sum_probs=30.3
Q ss_pred CCcceEEEEecCCCCceeEEEecchhhHHHHHHHHHhhhc
Q 002835 151 DKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 151 ~KK~~FvI~~~~~dgrty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
..++.|.+.+. ....-|.|+|..+.+.|++.|+..+.
T Consensus 68 ~~~~yfgL~T~---~G~vEfec~~~~~~k~W~~gI~~mL~ 104 (110)
T PF08458_consen 68 EERRYFGLKTA---QGVVEFECDSQREYKRWVQGIQHMLS 104 (110)
T ss_pred ceEEEEEEEec---CcEEEEEeCChhhHHHHHHHHHHHHH
Confidence 35666777754 45699999999999999999998874
No 339
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=20.86 E-value=9.4e+02 Score=30.23 Aligned_cols=80 Identities=18% Similarity=0.187 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHH-------HhhhcCCCCCCC------CCCCCChhhHHHHhhhhhhhhH------------
Q 002835 693 ENDVARLKDQLQKERDKRTAM-------EAGLGEFNGSFP------IPDTIDEKTKVELGEIAQAETD------------ 747 (875)
Q Consensus 693 e~~v~~l~~ql~~e~~~~~~l-------e~~~~~~~~~~~------~~~~~~~~~~~~l~~i~~~e~~------------ 747 (875)
++.+..|..||..-+.-+.+. +..+........ ....++.-.+++..+++.+++.
T Consensus 236 ~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~~y~~~h 315 (754)
T TIGR01005 236 TQQLAELNTELSRARANRAAAEGTADSVKKALQNGGSLDVLPEVLSSQLKLEDLIQRLRERQAELRATIADLSTTMLANH 315 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 466777777776655444432 222322111111 1122335556666666666653
Q ss_pred --HHHHHHHHHHHHHHHHHHhhhccCC
Q 002835 748 --IINLKQKAKDLRVQLSEQLEKNDGF 772 (875)
Q Consensus 748 --v~~l~~~~~~l~~~l~~~~~~~~~~ 772 (875)
|..|+.++.+|+.++.++.+.-..+
T Consensus 316 P~v~~l~~qi~~l~~~i~~e~~~~~~~ 342 (754)
T TIGR01005 316 PRVVAAKSSLADLDAQIRSELQKITKS 342 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777888888877766654433
No 340
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=20.81 E-value=6.2e+02 Score=27.30 Aligned_cols=71 Identities=25% Similarity=0.355 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhh--cCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 002835 691 ALENDVARLKDQLQKERDKRTAMEAGL--GEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSE 764 (875)
Q Consensus 691 ~le~~v~~l~~ql~~e~~~~~~le~~~--~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~v~~l~~~~~~l~~~l~~ 764 (875)
.|=.|+++|+.+|..|++--.| +.-| |.-.|..-+..+.-.-..-+++ +-.++.|.+|+-++++-..|-+|
T Consensus 127 klkndlEk~ks~lr~ei~~~~a-~~rLdLNLEkgr~~d~~~~~~l~~~e~s--~kId~Ev~~lk~qi~s~K~qt~q 199 (220)
T KOG3156|consen 127 KLKNDLEKLKSSLRHEISKTTA-EFRLDLNLEKGRIKDESSSHDLQIKEIS--TKIDQEVTNLKTQIESVKTQTIQ 199 (220)
T ss_pred HHHHHHHHHHHHHHHHHHhcch-hceeecchhhccccchhhhcchhHhHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667999999999999875432 2222 3444444333322222222333 44555555666666555555554
No 341
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=20.80 E-value=2.7e+02 Score=29.14 Aligned_cols=18 Identities=28% Similarity=0.457 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002835 687 ERRLALENDVARLKDQLQ 704 (875)
Q Consensus 687 ~~r~~le~~v~~l~~ql~ 704 (875)
++..+|++++++|+.+|+
T Consensus 110 ~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 110 EELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334456666666666665
No 342
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=20.60 E-value=1.9e+02 Score=35.78 Aligned_cols=58 Identities=28% Similarity=0.410 Sum_probs=41.5
Q ss_pred hhhhhcchH-HHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 002835 650 IQRLEDTKS-DLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAME 714 (875)
Q Consensus 650 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~ql~~e~~~~~~le 714 (875)
|-|||--|. |.+.|.+ |-++-.+|.+|+=| +-|++|+|= .+|.----++|++||.|.+
T Consensus 354 ~gkLdp~~aeeF~kRV~---~~ia~~~AEIekmK-~~Hak~m~k---~k~~s~lk~AE~~LR~a~~ 412 (669)
T PF08549_consen 354 VGKLDPGKAEEFRKRVA---KKIADMNAEIEKMK-ARHAKRMAK---FKRNSLLKDAEKELRDAVE 412 (669)
T ss_pred ccCCCHHHHHHHHHHHH---HHHHHHHHHHHHHH-HHHHHHHHH---HhhccHHHHHHHHHHhccC
Confidence 345555554 4677777 56688999999765 679999874 4444444579999999887
No 343
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=20.37 E-value=4.1e+02 Score=27.15 Aligned_cols=65 Identities=25% Similarity=0.303 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHH
Q 002835 682 KKALHERRLALENDVARL--KDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDL 758 (875)
Q Consensus 682 ~~~~~~~r~~le~~v~~l--~~ql~~e~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~v~~l~~~~~~l 758 (875)
|..+.-||...+.++.+| -.||-+--+.-.-.|+ ..|-.|.+++.+-++.+|.-|+.|-..|+.-
T Consensus 72 K~eFe~Y~~~a~~Em~KLi~yk~~aKsyAkkKD~Ea------------~~L~~KLkeEq~kv~~ME~~v~elas~m~~~ 138 (152)
T PF11500_consen 72 KEEFESYHEKAEKEMEKLIKYKQLAKSYAKKKDAEA------------MRLAEKLKEEQEKVAEMERHVTELASQMASK 138 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566777777777777 5566555444333333 2234456666666666666666665555543
No 344
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=20.31 E-value=2.3e+02 Score=27.00 Aligned_cols=42 Identities=12% Similarity=0.277 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 002835 676 ASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGL 717 (875)
Q Consensus 676 ~~~~~~~~~~~~~r~~le~~v~~l~~ql~~e~~~~~~le~~~ 717 (875)
.....++..|.+++..|++..++|+.+++.=..+...|+.+|
T Consensus 75 ~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~~~ 116 (116)
T cd04769 75 LPWPHLQQALEDKKQEIRAQITELQQLLARLDAFEASLKDAL 116 (116)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 455777889999999999999999999888777777766654
No 345
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=20.21 E-value=3.9e+02 Score=27.44 Aligned_cols=76 Identities=20% Similarity=0.208 Sum_probs=45.2
Q ss_pred hhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhH
Q 002835 672 EILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTA----MEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETD 747 (875)
Q Consensus 672 ~~~~~~~~~~~~~~~~~r~~le~~v~~l~~ql~~e~~~~~~----le~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~ 747 (875)
+.|++..++=+..+..-|..|.+|+.+|+.-++-+.+++.. ....++.. |-.-....-.+|+.+.++
T Consensus 76 ~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~k---------i~e~~~ki~~ei~~lr~~ 146 (177)
T PF07798_consen 76 AELRSENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELK---------IQELNNKIDTEIANLRTE 146 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH
Confidence 44666666666677777777888888887766655443321 11222211 222233444567888899
Q ss_pred HHHHHHHHH
Q 002835 748 IINLKQKAK 756 (875)
Q Consensus 748 v~~l~~~~~ 756 (875)
+..+|+.+-
T Consensus 147 iE~~K~~~l 155 (177)
T PF07798_consen 147 IESLKWDTL 155 (177)
T ss_pred HHHHHHHHH
Confidence 888877653
No 346
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=20.19 E-value=1.1e+03 Score=25.46 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=13.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHH
Q 002835 740 EIAQAETDIINLKQKAKDLRVQLSE 764 (875)
Q Consensus 740 ~i~~~e~~v~~l~~~~~~l~~~l~~ 764 (875)
.|..+|..|..|+++...|-.+.+.
T Consensus 121 ~~~~Le~Ki~e~~~~~~~l~ar~~~ 145 (225)
T COG1842 121 QLAALEQKIAELRAKKEALKARKAA 145 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555566555555554443
No 347
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=20.08 E-value=6e+02 Score=31.11 Aligned_cols=78 Identities=21% Similarity=0.315 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCC-------CCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHH
Q 002835 686 HERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNG-------SFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDL 758 (875)
Q Consensus 686 ~~~r~~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~-------~~~~~~~~~~~~~~~l~~i~~~e~~v~~l~~~~~~l 758 (875)
+..|-.||+++.+|++++-+ ||.-++.+.....+ .+...+.+..+..-.+-.|..+|-++..|+.+..-|
T Consensus 105 ~~~ra~~e~ei~kl~~e~~e---lr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl 181 (546)
T KOG0977|consen 105 ARERAKLEIEITKLREELKE---LRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRL 181 (546)
T ss_pred HHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34688899999999999854 33333333222211 122233344444444556666666666666666666
Q ss_pred HHHHHHHh
Q 002835 759 RVQLSEQL 766 (875)
Q Consensus 759 ~~~l~~~~ 766 (875)
..+|..-|
T Consensus 182 ~~~l~~~r 189 (546)
T KOG0977|consen 182 REELARAR 189 (546)
T ss_pred HHHHHHHH
Confidence 55555444
No 348
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=20.06 E-value=3.4e+02 Score=24.72 Aligned_cols=50 Identities=18% Similarity=0.369 Sum_probs=33.2
Q ss_pred cchHHHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002835 655 DTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQLQ 704 (875)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~ql~ 704 (875)
..+.++..+|+--+-+...++-.+=.=-++-..-+.+-|.++.||+.+|.
T Consensus 25 ~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe 74 (79)
T PF08581_consen 25 HQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777777777777777665544444444556666777777777774
Done!