Query 002835
Match_columns 875
No_of_seqs 502 out of 2425
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 03:30:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002835.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002835hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3byi_A RHO GTPase activating p 100.0 7E-41 2.4E-45 346.8 16.8 205 215-438 4-214 (214)
2 3msx_B RHO GTPase-activating p 100.0 2.5E-40 8.6E-45 339.1 15.1 194 224-435 7-201 (201)
3 1f7c_A Rhogap protein; GTPase 100.0 1.4E-40 4.8E-45 348.7 12.9 210 174-440 1-221 (231)
4 2ee4_A RHO GTPase activating p 100.0 2.4E-40 8.2E-45 341.6 14.3 196 226-440 9-207 (209)
5 1tx4_A P50-rhogap; complex (GT 100.0 6.3E-40 2.2E-44 335.8 15.9 192 224-435 3-198 (198)
6 3iug_A RHO/CDC42/RAC GTPase-ac 100.0 7E-40 2.4E-44 342.7 15.3 205 224-442 16-226 (229)
7 2osa_A N-chimaerin; RHO-GAP, G 100.0 1.4E-39 4.9E-44 334.1 17.2 191 227-435 6-202 (202)
8 3fk2_A Glucocorticoid receptor 100.0 9.9E-40 3.4E-44 345.3 15.4 195 225-438 49-246 (246)
9 1ow3_A RHO-GTPase-activating p 100.0 7.8E-39 2.7E-43 337.7 16.0 195 224-438 39-237 (242)
10 3kuq_A RHO GTPase-activating p 100.0 1.2E-37 4E-42 325.9 17.9 207 226-434 17-228 (228)
11 1pbw_A Rhogap domain, phosphat 100.0 1.3E-38 4.3E-43 330.6 9.8 191 227-440 5-203 (216)
12 2ovj_A Mgcracgap, RAC GTPase-a 100.0 1.2E-36 4.2E-41 312.4 16.6 188 233-437 5-196 (201)
13 3eap_A RHO GTPase-activating p 100.0 1.1E-36 3.8E-41 326.5 14.4 196 224-436 59-258 (271)
14 3cxl_A N-chimerin; SH2, RHO-GA 100.0 2.6E-35 8.9E-40 337.5 15.3 191 227-435 267-463 (463)
15 2xs6_A Phosphatidylinositol 3- 100.0 6.9E-36 2.4E-40 310.0 2.3 189 227-438 20-212 (214)
16 3qis_A Inositol polyphosphate 100.0 2.3E-31 7.8E-36 296.5 14.7 141 243-390 198-338 (366)
17 4h8s_A DCC-interacting protein 99.8 6.9E-20 2.4E-24 206.2 0.8 168 4-192 231-400 (407)
18 2q13_A DCC-interacting protein 99.7 1.5E-19 5.1E-24 202.1 -0.8 161 5-190 209-375 (385)
19 1wi1_A Calcium-dependent activ 99.7 6.2E-17 2.1E-21 154.2 11.7 102 84-193 8-113 (126)
20 1v88_A Oxysterol binding prote 99.7 6.2E-16 2.1E-20 148.3 13.1 100 83-193 7-127 (130)
21 1x1f_A Signal-transducing adap 99.6 1.1E-15 3.8E-20 150.1 14.0 96 84-190 18-113 (149)
22 1wjm_A Beta-spectrin III; PH d 99.6 9.1E-16 3.1E-20 143.9 9.6 107 83-194 7-121 (123)
23 2p0d_A RHO GTPase-activating p 99.6 1.4E-15 4.9E-20 145.0 10.2 104 83-191 11-125 (129)
24 1dyn_A Dynamin; signal transdu 99.6 3.2E-15 1.1E-19 141.4 12.4 99 84-188 12-115 (125)
25 2lul_A Tyrosine-protein kinase 99.6 6E-15 2.1E-19 146.5 14.9 109 80-194 11-125 (164)
26 2rsg_A Collagen type IV alpha- 99.6 1.9E-15 6.4E-20 135.0 10.2 92 84-188 1-92 (94)
27 1wgq_A FYVE, rhogef and PH dom 99.6 3.4E-15 1.2E-19 136.7 12.0 99 84-193 8-106 (109)
28 3pp2_A RHO GTPase-activating p 99.6 2.8E-15 9.5E-20 142.0 11.2 104 83-190 7-123 (124)
29 3cxb_B Pleckstrin homology dom 99.6 7E-15 2.4E-19 136.8 12.1 99 85-190 1-101 (112)
30 1v89_A Hypothetical protein KI 99.6 8.5E-15 2.9E-19 134.8 12.5 105 83-194 7-116 (118)
31 1dro_A Beta-spectrin; cytoskel 99.6 2.3E-15 8E-20 141.4 8.4 103 83-190 7-119 (122)
32 2d9v_A Pleckstrin homology dom 99.6 7.3E-15 2.5E-19 139.8 11.8 103 83-191 7-115 (130)
33 2yry_A Pleckstrin homology dom 99.6 2E-14 6.8E-19 133.6 14.3 100 83-190 21-120 (122)
34 2cof_A Protein KIAA1914; PH do 99.6 3.9E-15 1.3E-19 136.4 9.2 95 84-191 8-102 (107)
35 1v5u_A SBF1, SET binding facto 99.6 8.2E-15 2.8E-19 135.1 11.4 103 83-194 7-115 (117)
36 1u5d_A SKAP55, SRC kinase-asso 99.6 7.2E-15 2.5E-19 132.9 10.8 102 83-190 2-105 (108)
37 2da0_A 130-kDa phosphatidylino 99.6 1.1E-14 3.7E-19 135.1 12.2 94 84-192 10-103 (114)
38 1pls_A Pleckstrin homology dom 99.6 1.2E-14 4.2E-19 133.7 12.1 100 84-193 5-104 (113)
39 2dhk_A TBC1 domain family memb 99.6 6.3E-15 2.2E-19 137.8 10.1 95 84-190 8-104 (119)
40 2coc_A FYVE, rhogef and PH dom 99.6 1.1E-14 3.8E-19 136.3 11.7 96 84-190 8-106 (112)
41 1upq_A PEPP1; PH domain, phosp 99.6 2E-14 6.8E-19 133.8 13.1 99 84-190 11-109 (123)
42 1v5p_A Pleckstrin homology dom 99.6 9.6E-15 3.3E-19 139.2 11.1 101 84-193 15-123 (126)
43 2j59_M RHO-GTPase activating p 99.6 7.3E-15 2.5E-19 145.2 10.5 101 84-190 3-111 (168)
44 1u5f_A SRC-associated adaptor 99.6 2.3E-14 7.9E-19 138.7 13.2 103 83-191 16-120 (148)
45 1fgy_A GRP1; PH domain, signal 99.6 2E-14 7E-19 134.1 12.1 102 83-194 4-124 (127)
46 2dkp_A Pleckstrin homology dom 99.5 3.5E-14 1.2E-18 133.1 13.4 100 83-190 20-119 (128)
47 2d9y_A Pleckstrin homology dom 99.5 3.8E-14 1.3E-18 130.6 13.1 99 84-190 11-109 (117)
48 1btn_A Beta-spectrin; signal t 99.5 2.2E-14 7.4E-19 130.0 10.7 98 86-188 1-106 (106)
49 2w2x_D 1-phosphatidylinositol- 99.5 2.1E-14 7E-19 136.0 10.7 105 83-191 11-120 (124)
50 2cod_A Centaurin-delta 1; ARF 99.5 2.5E-14 8.4E-19 132.2 10.8 94 83-191 7-100 (115)
51 2i5f_A Pleckstrin; PH domain, 99.5 4.6E-14 1.6E-18 128.5 12.2 99 83-189 6-108 (109)
52 1x05_A Pleckstrin; PH domain, 99.5 1.1E-13 3.8E-18 130.2 14.5 102 82-191 16-121 (129)
53 1unq_A RAC-alpha serine/threon 99.5 1.5E-14 5E-19 135.7 8.4 103 83-191 7-111 (125)
54 1eaz_A Tandem PH domain contai 99.5 2E-14 6.9E-19 134.0 9.0 100 83-191 13-112 (125)
55 1fao_A Dual adaptor of phospho 99.5 3.5E-14 1.2E-18 133.1 10.6 97 83-191 17-113 (126)
56 4a6h_A Phosphatidylinositol 4, 99.5 4.5E-14 1.5E-18 133.7 11.3 100 84-189 6-117 (120)
57 3rcp_A Pleckstrin homology dom 99.5 7.4E-14 2.5E-18 126.4 12.3 95 86-192 1-95 (103)
58 2dn6_A KIAA0640 protein; PH do 99.5 5.5E-14 1.9E-18 129.2 11.4 96 83-190 7-103 (115)
59 1wg7_A Dedicator of cytokinesi 99.5 5.9E-14 2E-18 135.8 11.0 98 83-190 17-124 (150)
60 1btk_A Bruton'S tyrosine kinas 99.5 3.5E-14 1.2E-18 141.9 9.4 103 84-193 3-135 (169)
61 2y7b_A Actin-binding protein a 99.5 1.7E-14 5.9E-19 136.4 6.8 107 83-190 4-128 (134)
62 1x1g_A Pleckstrin 2; PH domain 99.5 2.4E-13 8.3E-18 127.7 14.2 100 83-190 17-124 (129)
63 2rlo_A Centaurin-gamma 1; spli 99.5 9.6E-14 3.3E-18 131.4 11.4 106 83-190 3-124 (128)
64 1u5e_A SRC-associated adaptor 99.5 9.5E-14 3.2E-18 143.5 10.8 102 83-190 105-208 (211)
65 3aj4_A Pleckstrin homology dom 99.5 7.7E-14 2.6E-18 128.1 8.7 100 84-189 5-110 (112)
66 2d9x_A Oxysterol binding prote 99.5 1E-13 3.5E-18 129.5 9.0 95 84-190 8-104 (120)
67 3a8p_A T-lymphoma invasion and 99.4 2.3E-13 7.9E-18 145.2 11.2 105 83-192 10-126 (263)
68 2dtc_A RAL guanine nucleotide 99.4 1.6E-12 5.4E-17 124.2 13.5 102 85-191 2-113 (126)
69 3tfm_A Myosin X; split PH doma 99.4 6E-13 2.1E-17 138.8 10.4 97 83-191 57-156 (228)
70 3tca_A Amyloid beta A4 precurs 99.3 2.3E-12 7.8E-17 137.4 10.0 104 84-190 168-276 (291)
71 2r09_A Cytohesin-3; autoinhibi 99.3 3.3E-12 1.1E-16 141.3 11.2 99 84-192 213-330 (347)
72 1qqg_A IRS-1, insulin receptor 99.3 2.9E-12 9.9E-17 136.8 8.8 98 83-192 9-114 (264)
73 3lju_X ARF-GAP with dual PH do 99.3 9.8E-12 3.3E-16 139.4 10.5 101 82-191 267-373 (386)
74 3a8n_A TIAM-1, T-lymphoma inva 99.2 1E-11 3.4E-16 133.4 7.6 102 84-190 11-124 (279)
75 2fjl_A 1-phosphatidylinositol- 99.2 9.8E-11 3.3E-15 114.4 12.0 103 85-191 2-149 (150)
76 2ys3_A UNC-112-related protein 99.2 8.8E-11 3E-15 112.9 11.2 101 85-190 10-112 (137)
77 2rov_A RHO-associated protein 99.2 3E-11 1E-15 113.8 7.4 104 86-190 3-115 (117)
78 3lju_X ARF-GAP with dual PH do 99.1 8.1E-11 2.8E-15 132.0 8.2 97 84-189 146-245 (386)
79 2d9w_A Docking protein 2; PH d 99.0 1.1E-09 3.9E-14 103.5 11.8 103 84-190 12-121 (127)
80 4ejn_A RAC-alpha serine/threon 99.0 9.8E-10 3.3E-14 123.8 10.7 102 83-190 5-108 (446)
81 3hk0_A Growth factor receptor- 98.9 2.6E-09 8.7E-14 113.5 11.6 105 83-190 131-240 (256)
82 4gmv_A RAS-associated and plec 98.9 2.2E-09 7.6E-14 115.3 8.8 104 84-190 158-266 (281)
83 4bbk_A Kindlin-1, fermitin fam 98.9 4.5E-09 1.5E-13 102.6 9.6 100 85-189 27-128 (165)
84 4f7h_A Fermitin family homolog 98.9 7.2E-09 2.4E-13 102.2 10.2 99 86-189 49-149 (173)
85 1w1g_A HPDK1, 3-phosphoinositi 98.6 1.1E-07 3.9E-12 92.9 10.5 89 83-190 51-139 (151)
86 2coa_A Protein kinase C, D2 ty 98.4 2E-06 7E-11 81.3 10.9 102 81-191 5-120 (125)
87 2d9z_A Protein kinase C, NU ty 98.2 7.7E-06 2.6E-10 77.6 11.1 102 81-191 5-124 (129)
88 1v5m_A SH2 and PH domain-conta 97.6 0.00083 2.8E-08 64.1 13.0 101 83-190 17-130 (136)
89 3tfm_A Myosin X; split PH doma 97.2 0.00029 9.8E-09 73.2 5.6 38 84-123 21-58 (228)
90 2lg1_A A-kinase anchor protein 97.2 0.0015 5.3E-08 65.9 10.5 103 82-192 69-174 (185)
91 3ml4_A Protein DOK-7; tyrosine 97.1 0.0011 3.7E-08 68.5 9.0 98 84-190 9-113 (224)
92 1v61_A RAC/CDC42 guanine nucle 96.8 0.0039 1.3E-07 59.8 9.0 85 103-193 45-129 (132)
93 3p6a_A RHO guanine nucleotide 96.8 0.0054 1.8E-07 67.5 11.4 101 83-191 258-372 (377)
94 3odw_A RHO guanine nucleotide 96.8 0.0045 1.5E-07 72.1 11.1 106 82-195 410-529 (536)
95 3t06_A PDZ-rhogef, RHO guanine 96.7 0.0065 2.2E-07 67.9 11.6 103 82-193 293-411 (418)
96 1zc3_B Exocyst complex protein 96.5 0.015 5.2E-07 54.1 10.4 96 83-189 7-106 (113)
97 3mpx_A FYVE, rhogef and PH dom 96.3 0.009 3.1E-07 67.1 9.4 96 83-191 243-338 (434)
98 1xcg_A PDZ-rhogef, RHO guanine 96.1 0.027 9.4E-07 61.7 11.8 100 83-191 252-367 (368)
99 1txd_A RHO guanine nucleotide 96.0 0.025 8.6E-07 62.5 10.9 101 83-191 256-370 (385)
100 1dbh_A Protein (human SOS 1); 95.8 0.031 1E-06 61.1 10.4 97 83-190 246-349 (354)
101 2pz1_A RHO guanine nucleotide 95.6 0.064 2.2E-06 60.9 12.2 106 83-191 333-441 (466)
102 1nty_A Triple functional domai 95.5 0.069 2.4E-06 57.3 11.4 100 84-190 203-308 (311)
103 2dfk_A Collybistin II; DH doma 95.5 0.092 3.2E-06 58.6 12.8 105 83-190 256-363 (402)
104 1kz7_A Guanine nucleotide exch 95.5 0.073 2.5E-06 58.3 11.8 102 83-190 209-325 (353)
105 2rgn_B RHOA/RAC/CDC42 exchange 95.0 0.088 3E-06 57.7 10.7 101 84-190 207-318 (354)
106 2vrw_B P95VAV, VAV1, proto-onc 94.9 0.11 3.7E-06 57.9 11.1 102 84-191 234-336 (406)
107 3zvr_A Dynamin-1; hydrolase, D 94.8 0.14 4.7E-06 62.1 12.5 99 84-188 540-643 (772)
108 3jzy_A Intersectin 2; C2 domai 94.4 0.007 2.4E-07 69.1 0.0 97 83-191 252-363 (510)
109 1mai_A Phospholipase C delta-1 94.4 0.15 5.3E-06 48.2 9.2 39 152-191 84-122 (131)
110 3qwm_A Iqsec1, IQ motif and SE 94.2 0.28 9.5E-06 47.4 10.6 102 84-190 13-122 (140)
111 3ky9_A Proto-oncogene VAV; cal 94.1 0.13 4.3E-06 60.4 9.8 102 84-191 406-508 (587)
112 3ol1_A Vimentin; structural ge 94.0 0.27 9.3E-06 46.2 9.9 42 653-694 18-59 (119)
113 2z0q_A XPLN, RHO guanine nucle 93.2 0.23 8E-06 53.9 9.3 100 83-189 231-345 (346)
114 3ksy_A SOS-1, SON of sevenless 91.6 0.44 1.5E-05 59.8 10.1 97 83-190 443-546 (1049)
115 2dfs_A Myosin-5A; myosin-V, in 91.2 0.6 2.1E-05 58.7 10.7 100 649-762 922-1046(1080)
116 1foe_A T-lymphoma invasion and 90.8 1.2 4.1E-05 48.8 11.5 105 84-190 238-366 (377)
117 3v5w_A G-protein coupled recep 89.7 0.98 3.4E-05 54.1 10.2 96 81-189 556-651 (689)
118 3o0z_A RHO-associated protein 88.3 3.9 0.00013 40.5 11.6 32 680-711 55-86 (168)
119 3o0z_A RHO-associated protein 88.2 2.4 8.3E-05 42.0 10.1 98 649-770 42-160 (168)
120 2fxo_A Myosin heavy chain, car 87.3 4.9 0.00017 38.0 11.4 35 678-712 32-66 (129)
121 3swk_A Vimentin; cytoskeleton, 87.3 3.5 0.00012 36.4 9.7 80 658-765 3-82 (86)
122 2ke4_A CDC42-interacting prote 84.8 2.4 8.1E-05 38.5 7.4 75 686-760 14-90 (98)
123 2eqb_B RAB guanine nucleotide 83.9 8 0.00027 35.0 10.3 67 684-764 16-94 (97)
124 3oja_B Anopheles plasmodium-re 80.7 2.8 9.7E-05 48.5 8.0 31 735-765 526-556 (597)
125 3c3f_A Alpha/beta peptide with 77.3 2.6 8.7E-05 30.8 3.7 28 677-704 5-32 (34)
126 3c3g_A Alpha/beta peptide with 77.2 2.6 8.9E-05 30.6 3.7 28 677-704 4-31 (33)
127 1z87_A Alpha-1-syntrophin; pro 74.8 3.5 0.00012 43.7 5.8 54 132-189 207-261 (263)
128 1kd8_A GABH AIV, GCN4 acid bas 74.8 4.2 0.00014 30.1 4.3 28 677-704 5-32 (36)
129 2ocy_A RAB guanine nucleotide 74.3 18 0.00062 35.3 10.2 66 685-764 49-126 (154)
130 1kd8_B GABH BLL, GCN4 acid bas 73.9 4.5 0.00015 29.9 4.3 29 677-705 5-33 (36)
131 2hy6_A General control protein 72.6 5.2 0.00018 29.3 4.3 27 677-703 5-31 (34)
132 2fxo_A Myosin heavy chain, car 72.4 36 0.0012 32.0 11.6 63 649-715 42-104 (129)
133 1uo4_A General control protein 72.1 4.2 0.00015 29.7 3.8 28 677-704 5-32 (34)
134 1fho_A UNC-89; pleckstrin homo 71.8 7.9 0.00027 36.1 6.8 98 84-189 10-111 (119)
135 2oxj_A Hybrid alpha/beta pepti 71.4 6.1 0.00021 28.9 4.5 28 677-704 5-32 (34)
136 3m48_A General control protein 71.2 4.6 0.00016 29.4 3.8 28 677-704 4-31 (33)
137 3oja_B Anopheles plasmodium-re 68.4 12 0.00041 43.1 9.0 40 647-686 455-494 (597)
138 2wq1_A General control protein 68.2 7.4 0.00025 28.3 4.3 27 677-703 4-30 (33)
139 3mq9_A Bone marrow stromal ant 67.6 34 0.0012 38.3 12.3 77 684-766 394-470 (471)
140 2e7s_A RAB guanine nucleotide 67.1 19 0.00066 34.4 8.4 63 688-764 40-114 (135)
141 2bni_A General control protein 66.8 5.8 0.0002 29.1 3.6 28 677-704 5-32 (34)
142 2q12_A DIP13 alpha, DCC-intera 66.6 0.12 4.2E-06 54.3 -7.6 42 4-45 208-250 (265)
143 2adz_A Alpha-1-syntrophin; pro 65.8 6.5 0.00022 39.3 5.1 54 132-189 122-176 (178)
144 1i84_S Smooth muscle myosin he 64.3 7.8 0.00027 49.2 6.8 36 682-717 915-950 (1184)
145 1m1j_B Fibrinogen beta chain; 63.1 58 0.002 37.2 12.8 73 673-768 125-197 (464)
146 3na7_A HP0958; flagellar bioge 62.3 50 0.0017 34.3 11.5 55 648-703 60-120 (256)
147 2v71_A Nuclear distribution pr 60.8 46 0.0016 33.6 10.3 20 730-749 135-154 (189)
148 1m1j_C Fibrinogen gamma chain; 60.4 60 0.002 36.5 12.2 89 674-764 25-116 (409)
149 1x79_B RAB GTPase binding effe 56.8 19 0.00066 33.4 6.2 70 691-766 10-79 (112)
150 2dfs_A Myosin-5A; myosin-V, in 56.0 64 0.0022 40.7 12.7 15 351-365 410-424 (1080)
151 1cxz_B Protein (PKN); protein- 55.4 46 0.0016 29.5 8.1 54 692-763 23-80 (86)
152 3ol1_A Vimentin; structural ge 54.8 66 0.0022 29.8 9.6 55 688-762 63-117 (119)
153 3na7_A HP0958; flagellar bioge 52.5 1.5E+02 0.0051 30.7 13.2 102 649-762 19-120 (256)
154 1fmh_A General control protein 50.0 16 0.00056 25.7 3.4 24 738-761 7-30 (33)
155 1fmh_A General control protein 49.9 25 0.00086 24.8 4.3 24 678-701 6-29 (33)
156 1c1g_A Tropomyosin; contractIl 48.7 1.7E+02 0.0059 28.6 12.6 21 684-704 87-107 (284)
157 2pnv_A Small conductance calci 47.8 29 0.001 26.8 4.9 31 674-704 10-40 (43)
158 1gmj_A ATPase inhibitor; coile 47.2 1E+02 0.0035 27.2 8.8 57 677-760 21-79 (84)
159 3qne_A Seryl-tRNA synthetase, 46.1 76 0.0026 36.4 10.3 78 672-766 16-105 (485)
160 3v6i_B V-type ATP synthase, su 44.0 54 0.0018 29.8 6.7 58 646-703 15-73 (105)
161 2r2v_A GCN4 leucine zipper; co 42.8 36 0.0012 25.0 4.3 26 678-703 6-31 (34)
162 4dzn_A Coiled-coil peptide CC- 42.7 34 0.0012 24.1 4.1 28 739-766 2-29 (33)
163 3mq7_A Bone marrow stromal ant 42.3 1.9E+02 0.0065 26.9 10.2 32 738-769 70-101 (121)
164 1cxz_B Protein (PKN); protein- 41.2 61 0.0021 28.7 6.6 27 643-669 13-39 (86)
165 3lay_A Zinc resistance-associa 40.3 88 0.003 31.1 8.5 30 732-764 113-142 (175)
166 2pms_C Pneumococcal surface pr 40.3 33 0.0011 32.3 5.0 32 733-764 55-86 (125)
167 3cve_A Homer protein homolog 1 39.3 1.8E+02 0.0062 24.8 10.1 35 677-711 4-38 (72)
168 1ses_A Seryl-tRNA synthetase; 37.2 1.1E+02 0.0036 34.4 9.6 35 732-766 64-98 (421)
169 4etp_A Kinesin-like protein KA 36.8 29 0.00098 38.9 4.8 43 677-719 14-56 (403)
170 3cvf_A Homer-3, homer protein 36.7 2E+02 0.0067 25.1 9.0 32 680-711 13-44 (79)
171 1urf_A Protein kinase C-like 1 34.0 89 0.003 27.3 6.3 67 693-769 7-73 (81)
172 3he4_A Synzip6; heterodimeric 33.3 20 0.00068 28.0 1.9 40 658-701 6-45 (56)
173 2dq3_A Seryl-tRNA synthetase; 32.7 1.2E+02 0.004 34.1 9.0 32 730-761 73-104 (425)
174 3u1c_A Tropomyosin alpha-1 cha 32.4 2.4E+02 0.0082 25.2 9.4 36 669-704 18-54 (101)
175 3bas_A Myosin heavy chain, str 31.9 84 0.0029 27.6 6.1 26 678-703 61-86 (89)
176 3pk1_B Apoptosis regulator BAX 31.6 17 0.0006 26.6 1.3 16 661-676 16-31 (34)
177 2w83_C C-JUN-amino-terminal ki 30.8 37 0.0013 29.3 3.4 48 652-703 27-74 (77)
178 3ghg_C Fibrinogen gamma chain; 30.2 2.9E+02 0.0098 31.0 11.4 92 674-765 25-117 (411)
179 3edu_A Beta-I spectrin, spectr 28.4 2.9E+02 0.01 27.0 10.4 118 647-764 37-172 (218)
180 1wt6_A Myotonin-protein kinase 28.2 1.5E+02 0.0052 25.9 6.8 49 657-705 12-70 (81)
181 2v71_A Nuclear distribution pr 27.8 3.2E+02 0.011 27.5 10.2 23 741-763 90-112 (189)
182 1i84_S Smooth muscle myosin he 27.3 92 0.0032 39.5 7.7 9 503-511 587-595 (1184)
183 1joc_A EEA1, early endosomal a 26.9 65 0.0022 30.1 4.7 32 734-765 6-37 (125)
184 3u59_A Tropomyosin beta chain; 26.4 2.4E+02 0.0083 25.1 8.3 36 669-704 18-54 (101)
185 3mq9_A Bone marrow stromal ant 26.2 3.8E+02 0.013 29.7 11.8 69 671-759 399-470 (471)
186 3bas_A Myosin heavy chain, str 26.2 3.3E+02 0.011 23.8 8.9 25 691-715 18-42 (89)
187 3u06_A Protein claret segregat 26.1 66 0.0023 36.1 5.4 42 678-719 15-56 (412)
188 2dq0_A Seryl-tRNA synthetase; 25.7 2.3E+02 0.0077 32.1 9.8 34 733-766 70-103 (455)
189 1joc_A EEA1, early endosomal a 25.7 2.4E+02 0.0081 26.2 8.4 24 682-705 6-29 (125)
190 3oja_A Leucine-rich immune mol 25.3 2.4E+02 0.0082 31.4 10.0 95 675-769 355-451 (487)
191 3ghg_A Fibrinogen alpha chain; 24.6 86 0.0029 36.1 5.9 109 653-772 55-164 (562)
192 2c5k_T Syntaxin TLG1, T-snare 23.9 1.9E+02 0.0066 25.7 7.0 59 686-764 35-93 (95)
193 3swf_A CGMP-gated cation chann 23.3 1.8E+02 0.0062 25.0 6.3 48 645-699 4-51 (74)
194 3ra3_B P2F; coiled coil domain 22.3 48 0.0017 22.6 2.0 18 736-753 11-28 (28)
195 3viq_B Mating-type switching p 22.1 62 0.0021 28.6 3.3 29 675-703 3-31 (85)
196 3k29_A Putative uncharacterize 22.1 5.7E+02 0.02 25.2 11.6 77 678-767 18-106 (169)
197 3lbx_B Beta-I spectrin, spectr 22.0 4.7E+02 0.016 24.9 10.3 111 645-760 38-171 (185)
198 4emc_A Monopolin complex subun 22.0 1.8E+02 0.0061 29.3 7.0 13 692-704 25-37 (190)
199 3ibp_A Chromosome partition pr 21.7 3.9E+02 0.013 28.6 9.9 84 681-764 18-101 (302)
200 3ra3_A P1C; coiled coil domain 21.7 71 0.0024 21.8 2.7 17 743-759 11-27 (28)
201 3lss_A Seryl-tRNA synthetase; 21.6 1.6E+02 0.0055 33.7 7.5 29 738-766 109-138 (484)
202 1f5n_A Interferon-induced guan 21.3 3.5E+02 0.012 31.6 10.5 41 665-705 467-512 (592)
203 3mq7_A Bone marrow stromal ant 20.8 1.2E+02 0.0042 28.2 5.1 33 673-705 57-89 (121)
204 2z5i_A TM, general control pro 20.4 1E+02 0.0035 24.6 4.0 27 742-768 8-34 (52)
205 1fmh_B General control protein 20.4 1.4E+02 0.0046 21.1 4.0 25 678-702 6-30 (33)
206 3lay_A Zinc resistance-associa 20.3 3.1E+02 0.011 27.1 8.4 24 682-705 73-96 (175)
207 1g6u_A Domain swapped dimer; d 20.0 1.1E+02 0.0036 23.3 3.6 24 739-762 20-43 (48)
No 1
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens}
Probab=100.00 E-value=7e-41 Score=346.77 Aligned_cols=205 Identities=26% Similarity=0.432 Sum_probs=178.5
Q ss_pred Cchhhhccc-CCCCCccccChhHhhhc-CCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCC-CCCCC
Q 002835 215 GSVEQLKEK-PVKFPVIGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGK-TEFSP 291 (875)
Q Consensus 215 ~s~~~~~~K-~~k~~vFGvpLe~ll~~-~~~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~-~~~~~ 291 (875)
++.+.+++| ..+.++||+||+.++.+ +..||.+|.+|+.||+.+|+.+|||||++|+..+|++|+..++.|. .++..
T Consensus 4 ps~~~l~~~~~~~~~vFG~~L~~~~~~~~~~vP~~v~~~i~~l~~~gl~~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~ 83 (214)
T 3byi_A 4 PSLKTLQEKGLIKDQIFGSHLHKVCERENSTVPWFVKQCIEAVEKRGLDVDGIYRVSGNLATIQKLRFIVNQEEKLNLDD 83 (214)
T ss_dssp CCHHHHHHHTSCCCCSTTSCHHHHHHHHTCSSCHHHHHHHHHHHHHTTTSTTTTTSCCCHHHHHHHHHHHHTTCCCCTTS
T ss_pred CchhhHHhcCCCcCCccCCcHHHHHHHcCCCCChHHHHHHHHHHHhCCCCCCccccCCCHHHHHHHHHHHhcCCCCCCCc
Confidence 444556666 77889999999998864 6789999999999999999999999999999999999999999985 33332
Q ss_pred --CCCchhhHhhHHHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhc
Q 002835 292 --EEDAHIIADCVKYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKN 368 (875)
Q Consensus 292 --~~D~h~VAslLK~fLReLPePLlp~~ly~~~i~a~~~~~-~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~ 368 (875)
..|+|+||++||.|||+||+||||+++|+.|+.+.+..+ .+++..++.+|. +||+.|+.+|+||+.||++|+.|++
T Consensus 84 ~~~~dvh~va~lLK~flreLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll~-~LP~~n~~~L~~L~~~L~~v~~~s~ 162 (214)
T 3byi_A 84 SQWEDIHVVTGALKMFFRELPEPLFPYSFFEQFVEAIKKQDNNTRIEAVKSLVQ-KLPPPNRDTMKVLFGHLTKIVAKAS 162 (214)
T ss_dssp GGGCSHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHTSSSHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHHHTHH
T ss_pred ccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHccc
Confidence 249999999999999999999999999999999999888 899999999886 9999999999999999999999999
Q ss_pred ccCCCccccceeecccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Q 002835 369 QNRMSTSAVAACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEG 438 (875)
Q Consensus 369 ~NkMta~NLAi~FgPtLLrp~~s~~~e~e~d~~~~g~~~~qL~~a~~~~~~~~~IVe~LIeny~~IF~e~ 438 (875)
.|+||+.|||+||||+|||++... + . .+......+.+|++||+||+.||+++
T Consensus 163 ~NkM~~~NLa~vf~P~Ll~~~~~~-----------~--~-----~~~~~~~~~~vve~LI~~~~~iF~~d 214 (214)
T 3byi_A 163 KNLMSTQSLGIVFGPTLLRAENET-----------G--N-----MAIHMVYQNQIAELMLSEYSKIFGSE 214 (214)
T ss_dssp HHCCCHHHHHHHHHHHHHCCTTSS-----------S--C-----HHHHHHHHHHHHHHHHHTHHHHHC--
T ss_pred CCCCCHHHhHHHhccccCCCCCcc-----------H--H-----HHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999987311 0 0 01234567889999999999999863
No 2
>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens}
Probab=100.00 E-value=2.5e-40 Score=339.13 Aligned_cols=194 Identities=19% Similarity=0.343 Sum_probs=170.8
Q ss_pred CCCCCccccChhHhhhcCCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCCCCCCCCCchhhHhhHH
Q 002835 224 PVKFPVIGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHIIADCVK 303 (875)
Q Consensus 224 ~~k~~vFGvpLe~ll~~~~~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~~~~~~~~D~h~VAslLK 303 (875)
+.++.+||++|+.++++ +.||.+|.+|+.||+++|+.+|||||++|+...+++|++.|+.|.......+|+|+||++||
T Consensus 7 ~~~~~vFG~~L~~~~~~-~~vP~~v~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~d~~~va~lLK 85 (201)
T 3msx_B 7 PMPGQLFGISLPNICEN-DNLPKPVLDMLFFLNQKGPLTKGIFRQSANVKSCRELKEKLNSGVEVHLDCESIFVIASVLK 85 (201)
T ss_dssp ---CCCTTSCHHHHSGG-GCCCHHHHHHHHHHHHHGGGSTTTTTSCCCHHHHHHHHHHHHHTCCCCTTSSCHHHHHHHHH
T ss_pred CCCCCeeCCcHHHHhcC-CCCCHHHHHHHHHHHHhCCCCCCeeeeCCCHHHHHHHHHHhccCCCCCCCcccHHHHHHHHH
Confidence 34578999999988865 57999999999999999999999999999999999999999999754455679999999999
Q ss_pred HHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCccccceeec
Q 002835 304 YVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMA 382 (875)
Q Consensus 304 ~fLReLPePLlp~~ly~~~i~a~~~~~-~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NLAi~Fg 382 (875)
.|||+||+||||.++|+.|+.+....+ .+++..++.++. +||+.|+.+|+||+.||++|+.|++.|+||+.|||+|||
T Consensus 86 ~flreLp~pLl~~~l~~~~~~~~~~~~~~~~~~~~~~ll~-~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~vf~ 164 (201)
T 3msx_B 86 DFLRNIPGSIFSSDLYDHWVSVMDQGNDEEKINTVQRLLD-QLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVCVA 164 (201)
T ss_dssp HHHHTSTTTTTTGGGHHHHHHGGGSSSHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHHHH
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHccccHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHhccccCCCChhhhhhhhh
Confidence 999999999999999999999998888 899999999885 999999999999999999999999999999999999999
Q ss_pred ccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 002835 383 PLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIF 435 (875)
Q Consensus 383 PtLLrp~~s~~~e~e~d~~~~g~~~~qL~~a~~~~~~~~~IVe~LIeny~~IF 435 (875)
|+|||++.... .. ........++.+|++||+||+.||
T Consensus 165 P~ll~~~~~~~--------------~~--~~~~~~~~~~~iv~~LI~~~~~IF 201 (201)
T 3msx_B 165 PSILWPPASSS--------------PE--LENEFTKKVSLLIQFLIENCLRIF 201 (201)
T ss_dssp HHHCCCCTTSC--------------HH--HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccccCCCCCCC--------------hH--HHHHHHHHHHHHHHHHHHhhHhhC
Confidence 99999974211 11 111234566777999999999998
No 3
>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1
Probab=100.00 E-value=1.4e-40 Score=348.70 Aligned_cols=210 Identities=24% Similarity=0.338 Sum_probs=154.5
Q ss_pred chhhHHHHHHHHHhhhccCCCCCCCCcccCcccccchhhccCchhhhcccCCCCCccccChhHhhhcCC----CCcHHHH
Q 002835 174 SLEDLYDWKTALENALAQAPSTGSATGQNGILKNDKAEAANGSVEQLKEKPVKFPVIGRPILLALEDVD----GTPSFLE 249 (875)
Q Consensus 174 SEeE~~eWI~AI~~ai~~aP~~~~~~~~~~if~~~~~~~~~~s~~~~~~K~~k~~vFGvpLe~ll~~~~----~VP~~L~ 249 (875)
||+|++.|+.+|.+. .+|||+||...+.+.. .+|.+|.
T Consensus 1 ~e~~~~~W~~~m~~~--------------------------------------~pvfgvpl~~~~~~~~~l~~~~p~iv~ 42 (231)
T 1f7c_A 1 SEEDRRLWMEAMDGR--------------------------------------EPVYNSNKDNQSEGTAQLDSIGFSIIK 42 (231)
T ss_dssp --------------------------------------------------------------------CCSSHHHHHHHH
T ss_pred ChHHHHHHHHHcCCC--------------------------------------CCccCCcchhccccccccCCcCccHHH
Confidence 578999999999642 2489999988776522 3799999
Q ss_pred HHHHHHHHhCCccCCeeecCCCHHHHHHHHHH-HhcCC---CCCC--CCCCchhhHhhHHHHHhhCCCCCCChhhHHHHH
Q 002835 250 KAIRFIEEHGVQVEGILRQAAYVDDVHRRIRE-FEQGK---TEFS--PEEDAHIIADCVKYVIRELPSSPVPASCCNALL 323 (875)
Q Consensus 250 kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~-ld~g~---~~~~--~~~D~h~VAslLK~fLReLPePLlp~~ly~~~i 323 (875)
+|+.||+++|+.+|||||++|+..+|++|++. +|.|. .++. ..+|+|+||++||.|||+||+||||+++|+.|+
T Consensus 43 ~ci~~le~~gl~~eGIfR~sG~~~~v~~l~~~~~d~~~~~~~~l~~~~~~dvh~va~lLK~flReLPePLl~~~ly~~~~ 122 (231)
T 1f7c_A 43 KCIHAVETRGINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEIKTITSALKTYLRMLPGPLMMYQFQRSFI 122 (231)
T ss_dssp HHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHCC------CCCCCTTSCHHHHHHHHHHHHHTSSSCTTCHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCeeeeCCcHHHHHHHHHHHhCcCCCcccCccccccccHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Confidence 99999999999999999999999999999874 78763 3332 247999999999999999999999999999999
Q ss_pred HHHhcCc-hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCccccceeecccccCCCcCCcccccccccc
Q 002835 324 EARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLLAGECEIETDFNV 402 (875)
Q Consensus 324 ~a~~~~~-~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NLAi~FgPtLLrp~~s~~~e~e~d~~~ 402 (875)
.+.+..+ ++|+..++.+|. +||+.|+.+|+||+.||++|+.|++.|+||+.|||+||||+|||++....
T Consensus 123 ~~~~~~~~~~r~~~l~~ll~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Ll~~~~~~~--------- 192 (231)
T 1f7c_A 123 KAAKLENQESRVSEIHSLVH-RLPEKNRQMLHLLMNHLAKVADNHKQNLMTVANLGVVFGPTLLRPQEETV--------- 192 (231)
T ss_dssp HHHTCSSHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHSCC---CC---------
T ss_pred HHHhcCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhccccCCCCcccH---------
Confidence 9999888 899999999885 99999999999999999999999999999999999999999999873210
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCC
Q 002835 403 GGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEGSA 440 (875)
Q Consensus 403 ~g~~~~qL~~a~~~~~~~~~IVe~LIeny~~IF~e~~~ 440 (875)
.++.....++.+|++||+||+.||++.+.
T Consensus 193 ---------~~~~~~~~~~~vve~LI~~~~~iF~~~~~ 221 (231)
T 1f7c_A 193 ---------AAIMDIKFQNIVIEILIENHEKIFNTVPE 221 (231)
T ss_dssp ---------SGGGGHHHHHHHHHHHHHTHHHHHHSCCC
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 01112346778999999999999996644
No 4
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A
Probab=100.00 E-value=2.4e-40 Score=341.59 Aligned_cols=196 Identities=22% Similarity=0.394 Sum_probs=173.3
Q ss_pred CCCccccChhHhhhcCCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCC-CCC-CCCCchhhHhhHH
Q 002835 226 KFPVIGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT-EFS-PEEDAHIIADCVK 303 (875)
Q Consensus 226 k~~vFGvpLe~ll~~~~~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~~-~~~-~~~D~h~VAslLK 303 (875)
++.+||+||+.++..+..||.+|.+|+.||+.+|+.+|||||++|+..+|++|++.|+.|.. ++. ..+|+|+||++||
T Consensus 9 ~~~~FG~~L~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~d~~~va~lLK 88 (209)
T 2ee4_A 9 ESNYFGMPLQDLVTAEKPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSMEVTVNAVAGALK 88 (209)
T ss_dssp CCSSSSSCHHHHSCSSCCSCHHHHHHHHHHHHTCSCCTTTTTSCCCHHHHHHHHHHHHHCTTCCHHHHTCCHHHHHHHHH
T ss_pred CCCeeCCcHHHHHhcCCCCChHHHHHHHHHHHhCCCCCCccccCCCHHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHHH
Confidence 47899999999988778899999999999999999999999999999999999999999853 221 2469999999999
Q ss_pred HHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCccccceeec
Q 002835 304 YVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMA 382 (875)
Q Consensus 304 ~fLReLPePLlp~~ly~~~i~a~~~~~-~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NLAi~Fg 382 (875)
.|||+||+||||+++|+.|+.+.+..+ .+|+..++.+|. +||+.|+.+|+||+.||++|+.|++.|+||+.|||+|||
T Consensus 89 ~flreLPePLi~~~l~~~~~~~~~~~~~~~~~~~l~~ll~-~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLaivf~ 167 (209)
T 2ee4_A 89 AFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALKEIVK-KFHPVNYDVFRYVITHLNRVSQQHKINLMTADNLSICFW 167 (209)
T ss_dssp HHHHHSSSCSSCTTTHHHHHHHHSCSSHHHHHHHHHHHTT-TSCTTHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHH
T ss_pred HHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHhc
Confidence 999999999999999999999999888 899999999885 999999999999999999999999999999999999999
Q ss_pred ccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCC
Q 002835 383 PLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEGSA 440 (875)
Q Consensus 383 PtLLrp~~s~~~e~e~d~~~~g~~~~qL~~a~~~~~~~~~IVe~LIeny~~IF~e~~~ 440 (875)
|+|||+..... .+.. .+...+.+|++||+||+.||+++.+
T Consensus 168 P~L~~~~~~~~-------~~l~-----------~~~~~~~vve~LI~~~~~iF~~~~~ 207 (209)
T 2ee4_A 168 PTLMRPDFENR-------EFLS-----------TTKIHQSVVETFIQQCQFFFYNGEI 207 (209)
T ss_dssp HHHSCCCCCSS-------CCSC-----------CCTTHHHHHHHHHHTHHHHTTCCCC
T ss_pred ccccCCCCccH-------HHHH-----------HhHHHHHHHHHHHHhhHHHcCCCCC
Confidence 99999874221 0000 1124567999999999999997654
No 5
>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B*
Probab=100.00 E-value=6.3e-40 Score=335.76 Aligned_cols=192 Identities=22% Similarity=0.356 Sum_probs=170.3
Q ss_pred CCCCCccccChhHhhhcC---CCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCC-CCCCCCCchhhH
Q 002835 224 PVKFPVIGRPILLALEDV---DGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT-EFSPEEDAHIIA 299 (875)
Q Consensus 224 ~~k~~vFGvpLe~ll~~~---~~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~~-~~~~~~D~h~VA 299 (875)
+.+..+||+||+.++.+. ..||.+|.+|+.||+++|+.+|||||++|+..+|++|++.|+.|.. ++....|+|++|
T Consensus 3 ~~~~~vFG~~L~~~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~~a 82 (198)
T 1tx4_A 3 PLPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNALHLPA 82 (198)
T ss_dssp CCTTCCTTSCHHHHHHHSTTCCSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGGSSCTHHHH
T ss_pred CCCCCccCCcHHHHHhhCCCCCCCCHHHHHHHHHHHHhCCCCCCeeecCCcHHHHHHHHHHHhCCCCCCccccccchHHH
Confidence 456789999999998764 3799999999999999999999999999999999999999999863 333345899999
Q ss_pred hhHHHHHhhCCCCCCChhhHHHHHHHHhcCchHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCccccce
Q 002835 300 DCVKYVIRELPSSPVPASCCNALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAA 379 (875)
Q Consensus 300 slLK~fLReLPePLlp~~ly~~~i~a~~~~~~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NLAi 379 (875)
++||.|||+||+||||+++|+.|+.+.+.+.++++..++.+|. +||+.|+.+|+||+.||++|+.|++.|+||+.|||+
T Consensus 83 ~lLK~flreLpePLi~~~l~~~~~~~~~~~~~~~~~~l~~ll~-~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~ 161 (198)
T 1tx4_A 83 VILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQ-TLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAV 161 (198)
T ss_dssp HHHHHHHHHSSSCTTCGGGHHHHHTGGGSCGGGHHHHHHHHHT-TSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHH
T ss_pred HHHHHHHHHCCCcCCCHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHh
Confidence 9999999999999999999999999877655889999999885 999999999999999999999999999999999999
Q ss_pred eecccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 002835 380 CMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIF 435 (875)
Q Consensus 380 ~FgPtLLrp~~s~~~e~e~d~~~~g~~~~qL~~a~~~~~~~~~IVe~LIeny~~IF 435 (875)
||||+|||++.. ..........+.+|++||+||+.||
T Consensus 162 vf~P~Ll~~~~~-------------------~~~~~~~~~~~~~v~~LI~~~~~iF 198 (198)
T 1tx4_A 162 VFGPNLLWAKDA-------------------AITLKAINPINTFTKFLLDHQGELF 198 (198)
T ss_dssp HHHHHHCCCSSH-------------------HHHHHTHHHHHHHHHHHHHTHHHHC
T ss_pred hhcccccCCCCc-------------------cccHHHHHHHHHHHHHHHHhHHHhC
Confidence 999999998621 0112334567889999999999998
No 6
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens}
Probab=100.00 E-value=7e-40 Score=342.73 Aligned_cols=205 Identities=21% Similarity=0.286 Sum_probs=166.1
Q ss_pred CCCCCccccChhHhhhc-CCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCCC-CCC---CCCchhh
Q 002835 224 PVKFPVIGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTE-FSP---EEDAHII 298 (875)
Q Consensus 224 ~~k~~vFGvpLe~ll~~-~~~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~~~-~~~---~~D~h~V 298 (875)
..+.++||+||+.++.. +..||.+|.+|+.||+++|+ +|||||++|+...|++|++.|+.|... +.. .+|+|+|
T Consensus 16 ~~~~~vFG~~L~~~~~~~~~~vP~iv~~~i~~i~~~gl-~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~~~~dvh~v 94 (229)
T 3iug_A 16 FQGERVFGCDLGEHLLNSGFEVPQVLQSCTAFIERYGI-VDGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQDIHSV 94 (229)
T ss_dssp --CCCSTTSCHHHHHHHHCCSSCHHHHHHHHHHHHHCC-STTTTTSCCCHHHHHHHHHHHHTTCCCCTTSTTTTTCHHHH
T ss_pred CCCCCeECcchHHHHHhcCCCCCHHHHHHHHHHHHcCC-CCCCeecCCcHHHHHHHHHHHhcCCCCCccccccccchHHH
Confidence 44688999999987764 67899999999999999999 899999999999999999999998633 222 2599999
Q ss_pred HhhHHHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCcccc
Q 002835 299 ADCVKYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAV 377 (875)
Q Consensus 299 AslLK~fLReLPePLlp~~ly~~~i~a~~~~~-~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NL 377 (875)
|++||.|||+||+||||+++|+.|+.+....+ ++++..++.+|. +||+.|+.+|+||+.||++|+.|++.|+||+.||
T Consensus 95 a~lLK~fLreLPePLl~~~ly~~~~~~~~~~~~~~~~~~l~~ll~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NL 173 (229)
T 3iug_A 95 GSLCKLYFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHDVIQ-QLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNL 173 (229)
T ss_dssp HHHHHHHHHHCSSCTTCTTTHHHHHHHHTSSSHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHH
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHhccCccCCChHHH
Confidence 99999999999999999999999999999888 899999999885 9999999999999999999999999999999999
Q ss_pred ceeecccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCC
Q 002835 378 AACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEGSASP 442 (875)
Q Consensus 378 Ai~FgPtLLrp~~s~~~e~e~d~~~~g~~~~qL~~a~~~~~~~~~IVe~LIeny~~IF~e~~~s~ 442 (875)
|+||||+|||++..... .. .+ .++......++.||++||+||+.||++...+.
T Consensus 174 Aivf~P~Ll~~~~~~~~------~~--~~----~~~~~~~~~~~~vve~LI~~~~~iF~~~~~~~ 226 (229)
T 3iug_A 174 AIVWAPNLLRSKQIESA------CF--SG----TAAFMEVRIQSVVVEFILNHVDVLFSGRISMA 226 (229)
T ss_dssp HHHHHHHHCCC-------------------------------CHHHHHHHHHTHHHHTC------
T ss_pred HHHHhccccCCCccccc------cc--ch----HHHHHHHHHHHHHHHHHHHhHHHhCCCcHHhh
Confidence 99999999998731100 00 00 12233455678899999999999999775443
No 7
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.4e-39 Score=334.13 Aligned_cols=191 Identities=19% Similarity=0.330 Sum_probs=170.7
Q ss_pred CCccccChhHhhhc-CCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcC-C-CCCC--CCCCchhhHhh
Q 002835 227 FPVIGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQG-K-TEFS--PEEDAHIIADC 301 (875)
Q Consensus 227 ~~vFGvpLe~ll~~-~~~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g-~-~~~~--~~~D~h~VAsl 301 (875)
.++||+||+.++.+ +..||.+|.+|+.||+++|+.+|||||++|+..+|++|++.|+.+ . .++. ...|+|+||++
T Consensus 6 ~~vFG~~L~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~d~~~~~~~d~~~va~l 85 (202)
T 2osa_A 6 KKVYSCDLTTLVKAHTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGA 85 (202)
T ss_dssp -CCTTSCHHHHHHHHTCSSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHHHHHHH
T ss_pred CCccCCChHHHHHHcCCCCCcHHHHHHHHHHHhCCCcCCeeeecCcHHHHHHHHHHHHcCCCccCCCccccccHHHHHHH
Confidence 57999999988865 567999999999999999999999999999999999999999985 2 3443 24699999999
Q ss_pred HHHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCcccccee
Q 002835 302 VKYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAAC 380 (875)
Q Consensus 302 LK~fLReLPePLlp~~ly~~~i~a~~~~~-~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NLAi~ 380 (875)
||.|||+||+||||+++|+.|+.+.+..+ ++++..++.+|. +||+.|+.+|+||+.||++|+.|++.|+||+.|||+|
T Consensus 86 LK~flreLpePLl~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~NLa~v 164 (202)
T 2osa_A 86 LKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALK-LLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIV 164 (202)
T ss_dssp HHHHHHTCSSCSSCTTTHHHHHHHHHCCSHHHHHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHH
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHH
Confidence 99999999999999999999999999888 899999999886 9999999999999999999999999999999999999
Q ss_pred ecccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 002835 381 MAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIF 435 (875)
Q Consensus 381 FgPtLLrp~~s~~~e~e~d~~~~g~~~~qL~~a~~~~~~~~~IVe~LIeny~~IF 435 (875)
|||+|||++... . +.+.......+.+|++||+||+.||
T Consensus 165 f~P~Ll~~~~~~--------------~---~~~~~~~~~~~~vve~LI~~~~~iF 202 (202)
T 2osa_A 165 FGPTLMRSPELD--------------A---MAALNDIRYQRLVVELLIKNEDILF 202 (202)
T ss_dssp HHHHHCCCCCCC--------------H---HHHHHHHHHHHHHHHHHHHTHHHHC
T ss_pred HccccCCCCCcc--------------H---HHHHHHHHHHHHHHHHHHHcccccC
Confidence 999999987311 1 2233455678899999999999998
No 8
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens}
Probab=100.00 E-value=9.9e-40 Score=345.35 Aligned_cols=195 Identities=23% Similarity=0.435 Sum_probs=174.1
Q ss_pred CCCCccccChhHhhhcCCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCC-CCC-CCCCchhhHhhH
Q 002835 225 VKFPVIGRPILLALEDVDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT-EFS-PEEDAHIIADCV 302 (875)
Q Consensus 225 ~k~~vFGvpLe~ll~~~~~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~~-~~~-~~~D~h~VAslL 302 (875)
.++.+||+||+.++..+..||.+|.+|+.||+++|+.+|||||++|+...|++|++.|+.|.. ++. ..+|+|+||++|
T Consensus 49 ~~~~vFGv~L~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIFR~sG~~~~v~~L~~~~d~~~~~~~~~~~~dvh~va~lL 128 (246)
T 3fk2_A 49 WESNYFGVPLTTVVTPEKPIPIFIERCIEYIEATGLSTEGIYRVSGNKSEMESLQRQFDQDHNLDLAEKDFTVNTVAGAM 128 (246)
T ss_dssp CCCSSTTSCGGGGCCSSSCSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHHHCTTCCSGGGTCCHHHHHHHH
T ss_pred cCCCeeCCCHHHHhcCCCCCChHHHHHHHHHHHhCCCCCCeeEeCCcHHHHHHHHHHHhcCCCCCcccccCcHHHHHHHH
Confidence 357899999999998788999999999999999999999999999999999999999999863 332 246999999999
Q ss_pred HHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCccccceee
Q 002835 303 KYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACM 381 (875)
Q Consensus 303 K~fLReLPePLlp~~ly~~~i~a~~~~~-~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NLAi~F 381 (875)
|.|||+||+||||+.+|+.|+.+....+ ++++..++.+|. +||+.|+.+|+||+.||++|+.|++.|+||+.|||+||
T Consensus 129 K~fLReLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkMt~~NLAivf 207 (246)
T 3fk2_A 129 KSFFSELPDPLVPYNMQIDLVEAHKINDREQKLHALKEVLK-KFPKENHEVFKYVISHLNKVSHNNKVNLMTSENLSICF 207 (246)
T ss_dssp HHHHHHSSSCSSCHHHHHHHHHHTTCCSHHHHHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHHH
T ss_pred HHHHHhCCCccCCHHHHHHHHHHhccCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHhccCccCCchHHhHHHh
Confidence 9999999999999999999999999888 889999999886 99999999999999999999999999999999999999
Q ss_pred cccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Q 002835 382 APLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEG 438 (875)
Q Consensus 382 gPtLLrp~~s~~~e~e~d~~~~g~~~~qL~~a~~~~~~~~~IVe~LIeny~~IF~e~ 438 (875)
||+||||... + +.++..+..++.||++||+||+.||.++
T Consensus 208 ~P~Llrp~~~------~------------~~~~~~~~~~~~ive~LI~~~~~iF~n~ 246 (246)
T 3fk2_A 208 WPTLMRPDFS------T------------MDALTATRTYQTIIELFIQQCPFFFYNR 246 (246)
T ss_dssp HHHHHCCCSS------S------------SCHHHHHHHHHHHHHHHHHTHHHHHC--
T ss_pred cccccCCCCc------c------------HHHHHHHHHHHHHHHHHHHhHHHhcCCC
Confidence 9999998631 1 1123345677799999999999999863
No 9
>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B*
Probab=100.00 E-value=7.8e-39 Score=337.73 Aligned_cols=195 Identities=22% Similarity=0.350 Sum_probs=170.4
Q ss_pred CCCCCccccChhHhhhcC---CCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCC-CCCCCCCchhhH
Q 002835 224 PVKFPVIGRPILLALEDV---DGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT-EFSPEEDAHIIA 299 (875)
Q Consensus 224 ~~k~~vFGvpLe~ll~~~---~~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~~-~~~~~~D~h~VA 299 (875)
+.+..+||++|+.++.+. ..||.+|.+|+.||+.+|+.+|||||++|+..+|++|++.|+.|.. ++....|+|++|
T Consensus 39 ~~~~~vFG~~L~~~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~dv~~va 118 (242)
T 1ow3_A 39 PLPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNELHLPA 118 (242)
T ss_dssp CCTTCCSSSCHHHHHHHSTTCCSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGGSSCTHHHH
T ss_pred CCCCCccCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHcCCCCCceeeeCCcHHHHHHHHHHHhcCCCCCcccccchHHHH
Confidence 445789999999988764 3799999999999999999999999999999999999999999863 333345999999
Q ss_pred hhHHHHHhhCCCCCCChhhHHHHHHHHhcCchHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCccccce
Q 002835 300 DCVKYVIRELPSSPVPASCCNALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAA 379 (875)
Q Consensus 300 slLK~fLReLPePLlp~~ly~~~i~a~~~~~~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NLAi 379 (875)
++||.|||+||+||||+++|+.|+.+.+.+.++++..++.+|. +||+.|+.+|+||+.||++|+.|++.|+||+.|||+
T Consensus 119 ~lLK~flReLPePLl~~~ly~~~~~~~~~~~~~~~~~l~~ll~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAi 197 (242)
T 1ow3_A 119 VILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQ-TLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAV 197 (242)
T ss_dssp HHHHHHHHHSSSCTTCGGGHHHHHTGGGSCGGGHHHHHHHHHT-TSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHhccCcCCCCHHHhHH
Confidence 9999999999999999999999999887655889999999885 999999999999999999999999999999999999
Q ss_pred eecccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Q 002835 380 CMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEG 438 (875)
Q Consensus 380 ~FgPtLLrp~~s~~~e~e~d~~~~g~~~~qL~~a~~~~~~~~~IVe~LIeny~~IF~e~ 438 (875)
||||+|||++.. ...+......+.+|++||+||+.||++.
T Consensus 198 vf~P~Ll~~~~~-------------------~~~~~~~~~~~~~v~~LI~~~~~iF~~~ 237 (242)
T 1ow3_A 198 VFGPNLLWAKDA-------------------AITLKAINPINTFTKFLLDHQGELFPSP 237 (242)
T ss_dssp HHHHHHCCCSSH-------------------HHHHHTHHHHHHHHHHHHHTHHHHC---
T ss_pred hhcchhCCCCCc-------------------cccHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999998621 0112334567889999999999999865
No 10
>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.2e-37 Score=325.94 Aligned_cols=207 Identities=19% Similarity=0.297 Sum_probs=167.0
Q ss_pred CCCccccChhHhhhc-CCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCC-CCCCCCCCchhhHhhHH
Q 002835 226 KFPVIGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGK-TEFSPEEDAHIIADCVK 303 (875)
Q Consensus 226 k~~vFGvpLe~ll~~-~~~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~-~~~~~~~D~h~VAslLK 303 (875)
.++|||+||+.++++ +..||.+|.+|+.||+++|+.+|||||++|+..+|++|++.++.+. ......+|+|+||++||
T Consensus 17 ~~~vFGv~L~~~~~~~~~~vP~~v~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~~va~lLK 96 (228)
T 3kuq_A 17 QGSVFGVPLTVNVQRTGQPLPQSIQQAMRYLRNHCLDQVGLFRKSGVKSRIQALRQMNEGAIDCVNYEGQSAYDVADMLK 96 (228)
T ss_dssp TTSSTTCCHHHHHHHHSSSSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHTBSSSCCCCTTCCHHHHHHHHH
T ss_pred CCCEECCchHHHHHHcCCCCCHHHHHHHHHHHHhCCCcCCeeecCCCHHHHHHHHHHHhcCCCcCCcccCCHHHHHHHHH
Confidence 478999999988865 6789999999999999999999999999999999999999998753 33345679999999999
Q ss_pred HHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCccccceeec
Q 002835 304 YVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMA 382 (875)
Q Consensus 304 ~fLReLPePLlp~~ly~~~i~a~~~~~-~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NLAi~Fg 382 (875)
.|||+||+||||+++|+.|+.+++..+ ++++..++.+|. +||+.|+.+|+||+.||++|+.|++.|+||+.|||+|||
T Consensus 97 ~fLReLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~ 175 (228)
T 3kuq_A 97 QYFRDLPEPLMTNKLSETFLQIYQYVPKDQRLQAIKAAIM-LLPDENREVLQTLLYFLSDVTAAVKENQMTPTNLAVCLA 175 (228)
T ss_dssp HHHHHSSSCTTCSSHHHHHHHHHHHSCGGGHHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHH
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHhccccCCchhHhHHHHh
Confidence 999999999999999999999998877 899999999886 999999999999999999999999999999999999999
Q ss_pred ccccCCCcCCcccccccccc--CCCChHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 002835 383 PLLLRPLLAGECEIETDFNV--GGDGSAQLLQAAAAANHAQAIVITLLEEYDKI 434 (875)
Q Consensus 383 PtLLrp~~s~~~e~e~d~~~--~g~~~~qL~~a~~~~~~~~~IVe~LIeny~~I 434 (875)
|+|||+.... ++..++..+ +..........+.....+..+|.+||+||+.|
T Consensus 176 P~Ll~~~~~~-~~s~~~~~~~r~~~~~~~~~~~l~e~~aa~~~l~~mi~~~~~l 228 (228)
T 3kuq_A 176 PSLFHLNTLK-RENSSPRVMQRKQSLGKPDQKDLNENLAATQGLAHMIAECKKL 228 (228)
T ss_dssp HHHHTCCCC--------------------CHHHHHHHHHHHHHHHHHHHC----
T ss_pred hhhcCCCCCC-CCCCCcchhhhccccCCCcHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999987431 122221110 00000111223344556788999999999875
No 11
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1
Probab=100.00 E-value=1.3e-38 Score=330.59 Aligned_cols=191 Identities=16% Similarity=0.219 Sum_probs=157.2
Q ss_pred CCccccChhHhhhc---CCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCC-CCCCCCCchhhHhhH
Q 002835 227 FPVIGRPILLALED---VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT-EFSPEEDAHIIADCV 302 (875)
Q Consensus 227 ~~vFGvpLe~ll~~---~~~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~~-~~~~~~D~h~VAslL 302 (875)
..+||+||+.++.+ +..||.+|.+|+.||+++|+.+|||||++|+..+ ++|++.|+.|.. .....+|+|+||++|
T Consensus 5 ~~~fGv~L~~l~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~-~~l~~~~d~~~~~~~~~~~dv~~va~lL 83 (216)
T 1pbw_A 5 VEQQALTLPDLAEQFAPPDIAPPLLIKLVEAIEKKGLECSTLYRTQSSSNL-AELRQLLDCDTPSVDLEMIDVHVLADAF 83 (216)
T ss_dssp -------CCCHHHHCCTTSCSCHHHHHHHHHHHHHHTTCTTTTSSCCSCCT-THHHHHSCSSSSCCCGGGBCHHHHHHHH
T ss_pred cccCCCcHHHHHhccCCCCCcCHHHHHHHHHHHHcCCCCCCeeeCCChHHH-HHHHHHHHcCCCCCCccccCHHHHHHHH
Confidence 46899999998875 3579999999999999999999999999999999 999999999742 223457999999999
Q ss_pred HHHHhhCCCCCCChhhHHHHHHHHh-cCc-hHHHHHHHHHHHh--hCChhHHHHHHHHHHHHHHHHHhhcccCCCccccc
Q 002835 303 KYVIRELPSSPVPASCCNALLEARR-TDR-GSRVSAMRTAILE--TFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVA 378 (875)
Q Consensus 303 K~fLReLPePLlp~~ly~~~i~a~~-~~~-~eri~~i~~LI~~--~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NLA 378 (875)
|.|||+||+||||+++|+.|+.+.+ ..+ ++++..++.+| . +||+.|+.+|+||+.||++|+.|++.|+||+.|||
T Consensus 84 K~flReLPePLl~~~ly~~~~~~~~~~~~~~~~~~~l~~ll-~~~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLA 162 (216)
T 1pbw_A 84 KRYLLDLPNPVIPAAVYSEMISLAPEVQSSEEYIQLLKKLI-RSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVLS 162 (216)
T ss_dssp HHHHHTSSSCSSCHHHHHHHHHHGGGCCSHHHHHHHHHHHH-TCTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHH
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHH
Confidence 9999999999999999999999996 556 89999999977 5 79999999999999999999999999999999999
Q ss_pred eeecccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCC
Q 002835 379 ACMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEGSA 440 (875)
Q Consensus 379 i~FgPtLLrp~~s~~~e~e~d~~~~g~~~~qL~~a~~~~~~~~~IVe~LIeny~~IF~e~~~ 440 (875)
+||||+|||++... . . .. ..++.||++||+||+.||+..+.
T Consensus 163 ivf~P~Ll~~~~~~--------------~----~--~~-~~~~~vve~LI~~~~~iF~~~P~ 203 (216)
T 1pbw_A 163 EIFSPMLFRFSAAS--------------S----D--NT-ENLIKVIEILISTEWNERQPAPA 203 (216)
T ss_dssp HHHHHHHHTCSSCC--------------H----H--HH-HHHHHHHHHHHHTTC--------
T ss_pred HHHhhhcCCCCCCc--------------h----h--hh-HHHHHHHHHHHhhhHHhcCCCCC
Confidence 99999999997311 0 0 11 67889999999999999997643
No 12
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens}
Probab=100.00 E-value=1.2e-36 Score=312.38 Aligned_cols=188 Identities=20% Similarity=0.282 Sum_probs=163.7
Q ss_pred ChhHhhhc-CCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCC-CCCCC-CCchhhHhhHHHHHhhC
Q 002835 233 PILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKT-EFSPE-EDAHIIADCVKYVIREL 309 (875)
Q Consensus 233 pLe~ll~~-~~~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~~-~~~~~-~D~h~VAslLK~fLReL 309 (875)
.|+.++.. +..||.+|.+|+.||+++|+.+|||||++|+..+|++|++.|+.|.. ..... .|+|+||++||.|||+|
T Consensus 5 ~L~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~~~~~~~~~~~~~~d~h~va~lLK~flreL 84 (201)
T 2ovj_A 5 MLADFVSQTSPMIPSIVVHCVNEIEQRGLTETGLYRISGCDRTVKELKEKFLRVKTVPLLSKVDDIHAICSLLKDFLRNL 84 (201)
T ss_dssp CGGGGCCSSSSCCCHHHHHHHHHHHHHTTTSTTTTTSCCCHHHHHHHHHHHHTTCSCCCGGGCCCHHHHHHHHHHHHHTS
T ss_pred cHHHHhcccCCCCChHHHHHHHHHHHhCCCcCceeeeCCcHHHHHHHHHHHHcCCCCccccccCCHHHHHHHHHHHHHhC
Confidence 45555543 66799999999999999999999999999999999999999999853 22333 49999999999999999
Q ss_pred CCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCccccceeecccccCC
Q 002835 310 PSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRP 388 (875)
Q Consensus 310 PePLlp~~ly~~~i~a~~~~~-~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NLAi~FgPtLLrp 388 (875)
|+||||+++|+.|+.+.+..+ .+++..++.+|. +||+.|+.+|+||+.||++|+.+ +.|+||+.|||+||||+|||+
T Consensus 85 pePLi~~~l~~~~~~~~~~~~~~~~~~~l~~ll~-~LP~~n~~~L~~L~~~L~~V~~~-~~NkM~~~NLa~vf~P~ll~~ 162 (201)
T 2ovj_A 85 KEPLLTFRLNRAFMEAAEITDEDNSIAAMYQAVG-ELPQANRDTLAFLMIHLQRVAQS-PHTKMDVANLAKVFGPTIVAH 162 (201)
T ss_dssp SSCTTCTTTHHHHHHHHHCSSHHHHHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHHHC-TTSCCCHHHHHHHHHHHHTCC
T ss_pred CCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHcc-cccCCCHHHHHHHhhhhhcCC
Confidence 999999999999999999888 889999999886 99999999999999999999996 689999999999999999998
Q ss_pred CcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Q 002835 389 LLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGE 437 (875)
Q Consensus 389 ~~s~~~e~e~d~~~~g~~~~qL~~a~~~~~~~~~IVe~LIeny~~IF~e 437 (875)
+... ... +.++..+..++.||++||+||+.||+.
T Consensus 163 ~~~~------------~~~---~~~~~~~~~~~~vv~~LI~~~~~if~~ 196 (201)
T 2ovj_A 163 AVPN------------PDP---VTMLQDIKRQPKVVERLLSLPLEYWSQ 196 (201)
T ss_dssp SSSS------------CCH---HHHHHHHHHHHHHHHHHHHSCHHHHHG
T ss_pred CCCC------------CCH---HHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 6311 011 234456677889999999999999985
No 13
>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.1e-36 Score=326.46 Aligned_cols=196 Identities=22% Similarity=0.290 Sum_probs=157.3
Q ss_pred CCCCCccccChhHhhhc----CCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCCCCCCCCCchhhH
Q 002835 224 PVKFPVIGRPILLALED----VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHIIA 299 (875)
Q Consensus 224 ~~k~~vFGvpLe~ll~~----~~~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~~~~~~~~D~h~VA 299 (875)
+.++.+||+||+.++.. .+.||.+|.+|+.||++ |+.+|||||++|+...|++|++.||.|...+ ...++|+||
T Consensus 59 ~~~~~vFGv~L~~l~~~~~~~~~~iP~~l~~~~~~le~-gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~-~~~~~~~va 136 (271)
T 3eap_A 59 EIGGKIFGVPFNALPHSAVPEYGHIPSFLVDACTSLED-HIHTEGLFRKSGSVIRLKALKNKVDHGEGCL-SSAPPCDIA 136 (271)
T ss_dssp --CCSSTTSCGGGSCEEEETTTEEEEHHHHHHHHHHGG-GTTC--------CHHHHHHHHHHHHHC------CCCHHHHH
T ss_pred CCCCCeeCCcHHHHHhhccCCCCCcChHHHHHHHHHHh-CCCCCCeeeeCCCHHHHHHHHHHHHcCCCCc-ccccHHHHH
Confidence 44688999999987753 44699999999999975 8999999999999999999999999987543 357999999
Q ss_pred hhHHHHHhhCCCCCCChhhHHHHHHHHhcCchHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCccccce
Q 002835 300 DCVKYVIRELPSSPVPASCCNALLEARRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAA 379 (875)
Q Consensus 300 slLK~fLReLPePLlp~~ly~~~i~a~~~~~~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NLAi 379 (875)
++||.|||+||+||||+++|+.|+.+.+..+++++..++.++. .||+.|+.+|+||+.||++|+.|++.|+||+.|||+
T Consensus 137 ~lLK~fLReLPePLl~~~ly~~~~~~~~~~~~~~~~~~~~l~~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAi 215 (271)
T 3eap_A 137 GLLKQFFRELPEPILPADLHEALLKAQQLGTEEKNKATLLLSC-LLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAV 215 (271)
T ss_dssp HHHHHHHHHSSSCSSCGGGHHHHHHHTTSCHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHH
T ss_pred HHHHHHHHhCCcccCCHHHHHHHHHHHHHhHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHH
Confidence 9999999999999999999999999998866778888888664 899999999999999999999999999999999999
Q ss_pred eecccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 002835 380 CMAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFG 436 (875)
Q Consensus 380 ~FgPtLLrp~~s~~~e~e~d~~~~g~~~~qL~~a~~~~~~~~~IVe~LIeny~~IF~ 436 (875)
||||+|||++.... .+ . ..........+.||++||+||+.||.
T Consensus 216 vf~P~Ll~~~~~~~-------~~----~---~~~~~~~~~~~~vve~LI~~~~~IF~ 258 (271)
T 3eap_A 216 IFAPNLLQTSEGHE-------KM----S---SNTEKKLRLQAAVVQTLIDYASDIGR 258 (271)
T ss_dssp HHHHHHHTCCCCCT-------TC----C---HHHHHHHHHHHHHHHHHHHTGGGTTC
T ss_pred HHHhHhccCCCCcc-------ch----h---hhHHHHHHHHHHHHHHHHHhHHHHhC
Confidence 99999999873110 00 0 01122345667899999999999996
No 14
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=100.00 E-value=2.6e-35 Score=337.46 Aligned_cols=191 Identities=19% Similarity=0.324 Sum_probs=169.8
Q ss_pred CCccccChhHhhhc-CCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCC--CCCC--CCCCchhhHhh
Q 002835 227 FPVIGRPILLALED-VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGK--TEFS--PEEDAHIIADC 301 (875)
Q Consensus 227 ~~vFGvpLe~ll~~-~~~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~--~~~~--~~~D~h~VAsl 301 (875)
..+||++|+.++.. +..||.+|.+|+.+|+.+|+.+|||||++|+...|++|++.||.+. .++. ...|+|+||++
T Consensus 267 ~~vFG~~L~~~~~~~~~~vP~iv~~~i~~le~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~dv~~va~l 346 (463)
T 3cxl_A 267 KKVYSCDLTTLVKAHTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGA 346 (463)
T ss_dssp CCCTTSCHHHHHHHHTCSSCHHHHHHHHHHHHHCSCSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHHHHHHH
T ss_pred ccccccccchhhhccCCCCCeeHHHHHHHHHhcCCCCCceeEecCCHHHHHHHHHHHHhcCCcCCcccccCCCcchhhhH
Confidence 67999999988875 6789999999999999999999999999999999999999999852 3333 24599999999
Q ss_pred HHHHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCcccccee
Q 002835 302 VKYVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAAC 380 (875)
Q Consensus 302 LK~fLReLPePLlp~~ly~~~i~a~~~~~-~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NLAi~ 380 (875)
||.|||+||+||||+++|+.|+.+.+..+ ++++..++.+|. +||+.|+.+|+||+.||++|+.+++.|+||+.|||+|
T Consensus 347 LK~flReLPePLi~~~ly~~~~~~~~~~~~~~~~~~l~~ll~-~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAiv 425 (463)
T 3cxl_A 347 LKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEALK-LLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIV 425 (463)
T ss_dssp HHHHHHHCSSCSSCTTTHHHHHHHHHCCCHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHH
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHH
Confidence 99999999999999999999999999888 899999999886 9999999999999999999999999999999999999
Q ss_pred ecccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 002835 381 MAPLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIF 435 (875)
Q Consensus 381 FgPtLLrp~~s~~~e~e~d~~~~g~~~~qL~~a~~~~~~~~~IVe~LIeny~~IF 435 (875)
|||+|||++.... +.++..+...+.||++||+||+.||
T Consensus 426 f~P~Ll~~~~~~~-----------------~~~~~~~~~~~~vve~LI~~~~~iF 463 (463)
T 3cxl_A 426 FGPTLMRSPELDA-----------------MAALNDIRYQRLVVELLIKNEDILF 463 (463)
T ss_dssp HHHHHCCCCCSCT-----------------TGGGGGHHHHHHHHHHHHHTHHHHC
T ss_pred hhccccCCCCccH-----------------HHHHHHHHHHHHHHHHHHhchhhcC
Confidence 9999999874211 0111234567789999999999998
No 15
>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens}
Probab=100.00 E-value=6.9e-36 Score=310.03 Aligned_cols=189 Identities=21% Similarity=0.201 Sum_probs=140.5
Q ss_pred CCccccChhHhhhc---CCCCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCCCCCCCCCchhhHhhHH
Q 002835 227 FPVIGRPILLALED---VDGTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHIIADCVK 303 (875)
Q Consensus 227 ~~vFGvpLe~ll~~---~~~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~~~~~~~~D~h~VAslLK 303 (875)
.++||+||+.++++ .+.||.+|.+|+.||+++|+.+|||||++|+. |++ .+.......+|+|+||++||
T Consensus 20 ~~vFGv~L~~l~~~~~~~~~vP~iv~~~i~~l~~~Gl~~eGIfR~sG~~-----lr~---~~~~~dl~~~dvh~va~lLK 91 (214)
T 2xs6_A 20 FQSMGLTLPDLPEQFSPPDVAPPLLVKLVEAIERTGLDSESHYRPELPA-----PRT---DWSLSDVDQWDTAALADGIK 91 (214)
T ss_dssp -----CCCCCHHHHCCTTCCSCHHHHHHHHHHHHHCTTCSGGGCCSCCC-----CCC---CCCCTTGGGCCHHHHHHHHH
T ss_pred CcccCcCHHHHHHhhCCCCCCCHHHHHHHHHHHHhCCCCCCCeeeCHHH-----HHh---ccccCCCccCCHHHHHHHHH
Confidence 57999999988873 36799999999999999999999999999998 333 12222223579999999999
Q ss_pred HHHhhCCCCCCChhhHHHHHHHHhcCc-hHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCccccceeec
Q 002835 304 YVIRELPSSPVPASCCNALLEARRTDR-GSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMA 382 (875)
Q Consensus 304 ~fLReLPePLlp~~ly~~~i~a~~~~~-~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NLAi~Fg 382 (875)
.|||+||+||||+++|+.|+.+.+..+ .+++. .+| .+||+.|+.+|+||+.||++|+.+++.||||+.|||+|||
T Consensus 92 ~flReLPePLi~~~ly~~~i~~~~~~~~~~~~~---~l~-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~ 167 (214)
T 2xs6_A 92 SFLLALPAPLVTPEASAEARRALREAAGPVGPA---LEP-PTLPLHRALTLRFLLQHLGRVARRAPALGPAVRALGATFG 167 (214)
T ss_dssp HHHHHSSSCSSCHHHHHHHHHHHHCC--CCGGG---GST-TTSCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHH---HHH-HHCCHHHHHHHHHHHHHHHHHHHcccccCCCHHHHHHHHh
Confidence 999999999999999999999998776 44444 445 5999999999999999999999999999999999999999
Q ss_pred ccccCCCcCCccccccccccCCCChHHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Q 002835 383 PLLLRPLLAGECEIETDFNVGGDGSAQLLQAAAAANHAQAIVITLLEEYDKIFGEG 438 (875)
Q Consensus 383 PtLLrp~~s~~~e~e~d~~~~g~~~~qL~~a~~~~~~~~~IVe~LIeny~~IF~e~ 438 (875)
|+|||++..... .+. .+.. ..++......+.||++||+| .||+.+
T Consensus 168 P~Ll~~~~~~~~---~~~--~~~~----~~~~~d~~~~~~vve~LI~n--~ife~d 212 (214)
T 2xs6_A 168 PLLLRAPPPPSS---PPP--GGAP----DGSEPSPDFPALLVEKLLQE--HLEEQE 212 (214)
T ss_dssp HHHHC---------------------------CCTTHHHHHHHHHHHH--HHHC--
T ss_pred hhhcCCcccccc---ccc--ccch----hhhHHhHHHHHHHHHHHHhh--hccccC
Confidence 999999742100 000 0000 11223345678999999976 477754
No 16
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=99.97 E-value=2.3e-31 Score=296.48 Aligned_cols=141 Identities=14% Similarity=0.250 Sum_probs=129.9
Q ss_pred CCcHHHHHHHHHHHHhCCccCCeeecCCCHHHHHHHHHHHhcCCCCCCCCCCchhhHhhHHHHHhhCCCCCCChhhHHHH
Q 002835 243 GTPSFLEKAIRFIEEHGVQVEGILRQAAYVDDVHRRIREFEQGKTEFSPEEDAHIIADCVKYVIRELPSSPVPASCCNAL 322 (875)
Q Consensus 243 ~VP~~L~kcI~~Le~~Gl~~EGIFR~sG~~~~V~~Lk~~ld~g~~~~~~~~D~h~VAslLK~fLReLPePLlp~~ly~~~ 322 (875)
.||.+|.+|+.||+++|+.+|||||++|+..++++|++.|+.|..... ..|+|+||++||.|||+||+||||+.+|+.|
T Consensus 198 ~iP~~v~~~i~~l~~~Gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~-~~dvh~va~lLK~fLReLPePLi~~~ly~~~ 276 (366)
T 3qis_A 198 QVPKEIWLLVDHLFKYACHQEDLFQTPGMQEELQQIIDCLDTSIPETI-PGSNHSVAEALLIFLEALPEPVICYELYQRC 276 (366)
T ss_dssp SSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHHCCCSSC-CSCHHHHHHHHHHHHHHCSSCSSCHHHHHHH
T ss_pred CcChHHHHHHHHHHhcCCCCCCeEeCCCCHHHHHHHHHHHcCCCCCcc-ccCHHHHHHHHHHHHHhCCCCCCcHHHHHHH
Confidence 589999999999999999999999999999999999999999865433 3499999999999999999999999999999
Q ss_pred HHHHhcCchHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHhhcccCCCccccceeecccccCCCc
Q 002835 323 LEARRTDRGSRVSAMRTAILETFPEPNRKLLQRILMMMQTVASSKNQNRMSTSAVAACMAPLLLRPLL 390 (875)
Q Consensus 323 i~a~~~~~~eri~~i~~LI~~~LP~~Nr~lL~~Ll~~L~~Va~~S~~NkMta~NLAi~FgPtLLrp~~ 390 (875)
+.+.+. ...++.+|. +||+.|+.+|.||+.||++|+.|++.|+||+.|||+||||+|||++.
T Consensus 277 ~~~~~~-----~~~~~~ll~-~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA~vf~P~Llr~~~ 338 (366)
T 3qis_A 277 LDSAYD-----PRICRQVIS-QLPRCHRNVFRYLMAFLRELLKFSEYNSVNANMIATLFTSLLLRPPP 338 (366)
T ss_dssp HHHTTC-----HHHHHHHHH-TSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHHHHHHHSCCCC
T ss_pred HHHhhh-----HHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHhhhcccCCC
Confidence 998653 245677775 99999999999999999999999999999999999999999999983
No 17
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=99.75 E-value=6.9e-20 Score=206.22 Aligned_cols=168 Identities=15% Similarity=0.180 Sum_probs=116.1
Q ss_pred eeecCCchhhHhhhccchhhhcccceecccC-CCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCC
Q 002835 4 FQIFPPTHSIFAESCNHDAGDLVIGIWSVKA-PNGLRRKNLSGDAGTPPMATNPPGGPPSGQPPGPPPGPNDHRITRAGN 82 (875)
Q Consensus 4 ~~~~~~~~~~~~~df~~y~~~L~~~lq~tR~-~~~tR~~~esl~~~~~km~~~p~~~~~~~~~p~~~~~p~~~~~~~~~~ 82 (875)
+.+|+.||..+.++|++|+.+|+..+|++|. ++.+++++..+ ++.+.........+...+..+. ...+
T Consensus 231 ~~~f~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 299 (407)
T 4h8s_A 231 INFFKKGAEMFSKRMDSFLSSVADMVQSIQVELEAEAEKMRVS---QQELLSVDESVYTPDSDVAAPQ--------INRN 299 (407)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHCSCTTTTCTTSCSSSCC--------CCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhcccccccCCCCCccccc--------ccCC
Confidence 3578888866789999999999999999998 87776655544 1111111000000000001011 1123
Q ss_pred cEEEEeeeEeecC-CCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEec
Q 002835 83 AVFKSGPLFISSK-GIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPD 161 (875)
Q Consensus 83 ~v~KEGyL~k~kK-g~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~ 161 (875)
.+.|+||||++.+ |..+++|+||||||+++.|+||+..... +...+.|..|.+... ...+++|||.|++.
T Consensus 300 ~~~k~G~L~k~~~~g~~~~~W~rrwfvl~~~~l~y~~~~~~~-----~~~~~~l~~~~v~~~----~~~~r~~cF~i~~~ 370 (407)
T 4h8s_A 300 LIQKAGYLNLRNKTGLVTTTWERLYFFTQGGNLMCQPRGAVA-----GGLIQDLDNCSVMAV----DCEDRRYCFQITTP 370 (407)
T ss_dssp CSCCEEEEEEEEECSSSCEEEEEEEEEECSSCEECCCTTCSS-----CCCCBCSSCCEEEEE----CCTTCSSEEEEECT
T ss_pred cceeeceeeeeccCCCCCCCceEEEEEEECCEEEEEeCCCCC-----CCeEEECCceEEEEC----CCCCCCceEEEEec
Confidence 4789999999755 5557899999999999999999865433 113356677776643 34578999999865
Q ss_pred CCCCceeEEEecchhhHHHHHHHHHhhhccC
Q 002835 162 GRDGRAFTLKAESLEDLYDWKTALENALAQA 192 (875)
Q Consensus 162 ~~dgrty~fQAdSEeE~~eWI~AI~~ai~~a 192 (875)
.. .++|+|||+|++||..||.||++++..+
T Consensus 371 ~~-~~~~~l~A~s~~e~~~Wi~ai~~a~~~~ 400 (407)
T 4h8s_A 371 NG-KSGIILQAESRKENEEWICAINNISRQI 400 (407)
T ss_dssp TS-SCCEEEECSSSHHHHHHHHHHHHHHSCC
T ss_pred CC-CceEEEEcCCHHHHHHHHHHHHHHHHHh
Confidence 32 3789999999999999999999999643
No 18
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=99.73 E-value=1.5e-19 Score=202.10 Aligned_cols=161 Identities=14% Similarity=0.137 Sum_probs=110.6
Q ss_pred eecCCchhhHhhhccchhhhcccceecccC-CCccccccccCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCccccCC
Q 002835 5 QIFPPTHSIFAESCNHDAGDLVIGIWSVKA-PNGLRRKNLSGDAGTPPMAT---NPPGGPPSGQPPGPPPGPNDHRITRA 80 (875)
Q Consensus 5 ~~~~~~~~~~~~df~~y~~~L~~~lq~tR~-~~~tR~~~esl~~~~~km~~---~p~~~~~~~~~p~~~~~p~~~~~~~~ 80 (875)
.||+.||..++++|.||+++|+..||++|. ++.+++++..+ ++.+.. .+..+. ..+ +.++ ..
T Consensus 209 ~ff~~g~~~~~~~~~~~~~~l~~~l~~~r~~~~~~~~~~~~~---~~~l~~~~~~~~~~~---~~~--~~~~------~~ 274 (385)
T 2q13_A 209 SFFKMGSENLNEQLEEFLANIGTSVQNVRREMDSDIETMQQT---IEDLEVASDPLYVPD---PDP--TKFP------VN 274 (385)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHGGGSSSS---CCT--TTSC------CC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhccCCCCCCCC---Ccc--cccc------cC
Confidence 578999955678999999999999999999 98887766654 222211 000000 000 0000 01
Q ss_pred CCcEEEEeeeEeecCCC-CccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEE
Q 002835 81 GNAVFKSGPLFISSKGI-GWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLF 159 (875)
Q Consensus 81 ~~~v~KEGyL~k~kKg~-~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~ 159 (875)
.+.++|+|||+++++++ .+++|++|||||+++.|+||++. +.. +...+.|..|.+... ...++++||.|+
T Consensus 275 ~~~~~k~G~L~K~~~~~~~~~~WkkRwfvL~~~~L~y~k~~-~~~----~~~~i~l~~~~v~~~----~~~~r~~~F~i~ 345 (385)
T 2q13_A 275 RNLTRKAGYLNARNKTGLVSSTWDRQFYFTQGGNLMSQARG-DVA----GGLAMDIDNCSVMAV----DCEDRRYCFQIT 345 (385)
T ss_dssp CCCSCCEEEEEEC--------CCEEEEEEEETTEEEEECSS-CSS----CEEEEECTTCEEEEE----CCTTCSSEEEEE
T ss_pred CCCccEEEEEEEecCCCCCcCCceeEEEEEECCEEEEecCC-CcC----CCceEEccceEEEec----cccCCCceEEEE
Confidence 12478999999987654 34589999999999999999983 221 224567777766542 235788999998
Q ss_pred ecCCCC-ceeEEEecchhhHHHHHHHHHhhhc
Q 002835 160 PDGRDG-RAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 160 ~~~~dg-rty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
+. ++ ++|+|+|+|++||.+||.||+.++.
T Consensus 346 t~--~~~~~~~l~A~s~~e~~~Wi~ai~~~~~ 375 (385)
T 2q13_A 346 SF--DGKKSSILQAESKKDHEEWICTINNISK 375 (385)
T ss_dssp CT--TSCBCCCEECSSHHHHHHHHHHHHHHHT
T ss_pred eC--CCCeEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 65 23 8999999999999999999999985
No 19
>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.70 E-value=6.2e-17 Score=154.18 Aligned_cols=102 Identities=25% Similarity=0.404 Sum_probs=79.5
Q ss_pred EEEEeeeEeecCCCCccCceeEEEEEeCCeEEEec----CCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEE
Q 002835 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFR----SDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLF 159 (875)
Q Consensus 84 v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYK----d~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~ 159 (875)
+.++|||++++... +|+|+||||||++..|+||+ ++.+..|. -.+.|.+|++...........++++|.++
T Consensus 8 ~~~~G~L~KqG~~~-~K~WKrRwFVL~~~~LyYfk~~~~~~~~~~p~----G~I~L~g~tV~~~~~~~~~~~~k~~F~~v 82 (126)
T 1wi1_A 8 MKHSGYLWAIGKNV-WKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQ----ELLQLDGYTVDYTDPQPGLEGGRAFFNAV 82 (126)
T ss_dssp EEEEEEEEEECSSS-CCSCEEEEEEEEEEETTEEEEEECCSSSSCCS----EEEECSSCEEEECCCCSSCCSCSSEEEEE
T ss_pred CceeEEEEEeCCCc-ccccceEEEEEeCCEEEEEEcccccccCCCCc----eEEECCCcEEEEecCCcccccCceEEEEe
Confidence 78999999987654 59999999999999999999 77655442 23667777765322211234688999877
Q ss_pred ecCCCCceeEEEecchhhHHHHHHHHHhhhccCC
Q 002835 160 PDGRDGRAFTLKAESLEDLYDWKTALENALAQAP 193 (875)
Q Consensus 160 ~~~~dgrty~fQAdSEeE~~eWI~AI~~ai~~aP 193 (875)
.. +++|+|+|++++||..||.||..|+..+.
T Consensus 83 ~~---~~ty~~~Adseee~~~WikAi~~A~~~~~ 113 (126)
T 1wi1_A 83 KE---GDTVIFASDDEQDRILWVQAMYRATGQSH 113 (126)
T ss_dssp CS---SCEEEEECSSHHHHHHHHHHHHHHHTCSS
T ss_pred cC---CceEEEEcCCHHHHHHHHHHHHHHhcccc
Confidence 54 77899999999999999999999997554
No 20
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.65 E-value=6.2e-16 Score=148.30 Aligned_cols=100 Identities=21% Similarity=0.292 Sum_probs=76.1
Q ss_pred cEEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecC
Q 002835 83 AVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDG 162 (875)
Q Consensus 83 ~v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~ 162 (875)
.++++|||++++ ..++|++|||||+++.|+|||++.+..+ .-.+.|.+|.+... ....+++||.|....
T Consensus 7 ~v~k~GwL~K~g---~~k~WkrRWfVLk~~~L~yyk~~~~~~p----~G~I~L~~~~v~~~----~~~~~~~~F~i~~~~ 75 (130)
T 1v88_A 7 GIVMADWLKIRG---TLKSWTKLWCVLKPGVLLIYKTQKNGQW----VGTVLLNACEIIER----PSKKDGFCFKLFHPL 75 (130)
T ss_dssp SCCEEEEEEECC---SSSSCEEEEEEEETTEEEEESCSSSCCC----CEEEECSSCEECCC----CTTTSSCEEEEECTT
T ss_pred ceEEEeEEEEeC---CCCCceEEEEEEECCEEEEECCCCCCCc----eEEEEcCCCEEEEC----CCCCCCeEEEEEcCC
Confidence 489999998854 5689999999999999999999876533 23466777776432 122455899987543
Q ss_pred CC---------------------CceeEEEecchhhHHHHHHHHHhhhccCC
Q 002835 163 RD---------------------GRAFTLKAESLEDLYDWKTALENALAQAP 193 (875)
Q Consensus 163 ~d---------------------grty~fQAdSEeE~~eWI~AI~~ai~~aP 193 (875)
.. .++|+|+|+|++|+++||.||+.++...|
T Consensus 76 ~~~i~~~~g~~~~~~g~~~~~~~~~~~~f~A~s~~e~~~Wi~ai~~a~~~~~ 127 (130)
T 1v88_A 76 EQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALELALKSGP 127 (130)
T ss_dssp CCCCSCSSCTTSCSCSCCCSCCCSSCCEEECSSHHHHHHHHHHHHHHHTTTT
T ss_pred ccccccccCCcccccccccccCCceEEEEECCCHHHHHHHHHHHHHHHhcCC
Confidence 21 24599999999999999999999996444
No 21
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.64 E-value=1.1e-15 Score=150.06 Aligned_cols=96 Identities=19% Similarity=0.283 Sum_probs=71.8
Q ss_pred EEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecCC
Q 002835 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGR 163 (875)
Q Consensus 84 v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~~ 163 (875)
++|+|||++++.+ .++|++|||||+++.|+|||++.+..+.+ .+.|..+.+.... .....+.+||.|...
T Consensus 18 v~keG~L~Kkg~~--~k~WkrRWFvLk~~~L~Yyk~~~d~~~~g----~I~L~~~~~~~~~--~~~~~~~~~F~I~t~-- 87 (149)
T 1x1f_A 18 LYFEGFLLIKRSG--YREYEHYWTELRGTTLFFYTDKKSIIYVD----KLDIVDLTCLTEQ--NSTEKNCAKFTLVLP-- 87 (149)
T ss_dssp EEEEEEEEEECTT--CCSCEEEEEEEETTEEEEESCSSCSSCSE----ECCCSSCCEEEEC--CCTTSCCCEEEEECS--
T ss_pred ccEEEEEEEeCCC--CCCceeEEEEEcCCEEEEEeCCCccccCc----EEECCCceEEeec--cCCCCcCcEEEEEcC--
Confidence 8999999887643 59999999999999999999988764321 2344443322100 001234678888765
Q ss_pred CCceeEEEecchhhHHHHHHHHHhhhc
Q 002835 164 DGRAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 164 dgrty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
.++|+|+|+|++||.+||.||+.++.
T Consensus 88 -~r~~~f~A~s~ee~~eWi~aI~~v~~ 113 (149)
T 1x1f_A 88 -KEEVQLKTENTESGEEWRGFILTVTE 113 (149)
T ss_dssp -SCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred -CCEEEEEcCCHHHHHHHHHHHHHHHc
Confidence 68999999999999999999999885
No 22
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.62 E-value=9.1e-16 Score=143.91 Aligned_cols=107 Identities=21% Similarity=0.297 Sum_probs=77.9
Q ss_pred cEEEEeeeEeecC------CCCccCceeEEEEEeCCeEEEecCCCCCCCC--CCccceeecCCeeecCCCceeeecCCcc
Q 002835 83 AVFKSGPLFISSK------GIGWTSWKKRWFILTHTSLVFFRSDPSAIPQ--KGSEVNLTLGGIDLNNSGSVVVKADKKL 154 (875)
Q Consensus 83 ~v~KEGyL~k~kK------g~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~--~g~e~~i~L~~~~l~~s~sv~~~~~KK~ 154 (875)
.+.++|||+++.. +...+.|++|||||+++.|+|||++.+.... ..+...+.+.+|.+.... +...+++
T Consensus 7 ~v~~eG~L~kk~~~~~~gk~~~~~~Wk~rwfvL~~~~L~yyk~~~~~~~~~~~~~~~~i~l~~~~~~~~~---~~~~r~~ 83 (123)
T 1wjm_A 7 GEQMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPVSLARAQGSVAF---DYRKRKH 83 (123)
T ss_dssp CCCEEEEEEEEEEEEETTEECSCCCCEEEEEEEETTEEEEESSHHHHTTTCBSSSCCCEECTTCEEEECT---TCSSCSS
T ss_pred CeEEEEEEEEEEEEeCCCccCCCCCccEEEEEEECCEEEEEEcccccccCcccCCCceEEccCcEEeecc---cccCCCC
Confidence 3789999998542 2236899999999999999999988654210 112334566555443221 1246788
Q ss_pred eEEEEecCCCCceeEEEecchhhHHHHHHHHHhhhccCCC
Q 002835 155 LTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAPS 194 (875)
Q Consensus 155 ~FvI~~~~~dgrty~fQAdSEeE~~eWI~AI~~ai~~aP~ 194 (875)
||.|.. .++++|+|+|++++||++||.||+.++...|+
T Consensus 84 ~F~i~~--~~~~~~~f~A~s~~e~~~Wi~ai~~~~~~~~~ 121 (123)
T 1wjm_A 84 VFKLGL--QDGKEYLFQAKDEAEMSSWLRVVNAAIASGPS 121 (123)
T ss_dssp EEEEEC--SSSCEEEEECSSHHHHHHHHHHHHHHHHHCCC
T ss_pred EEEEEE--cCCcEEEEECCCHHHHHHHHHHHHHHHhccCC
Confidence 998875 35799999999999999999999999965443
No 23
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Probab=99.61 E-value=1.4e-15 Score=144.98 Aligned_cols=104 Identities=27% Similarity=0.481 Sum_probs=75.4
Q ss_pred cEEEEeeeEeec---CC-CCccCceeEEEEEeCCeEEEecCCCCCCC-------CCCccceeecCCeeecCCCceeeecC
Q 002835 83 AVFKSGPLFISS---KG-IGWTSWKKRWFILTHTSLVFFRSDPSAIP-------QKGSEVNLTLGGIDLNNSGSVVVKAD 151 (875)
Q Consensus 83 ~v~KEGyL~k~k---Kg-~~~ksWkKRWfVL~~~sL~yYKd~k~~~p-------~~g~e~~i~L~~~~l~~s~sv~~~~~ 151 (875)
.+.|+|||+++. +| ...++|++|||||+++.|+|||+.+.... ...+...+.|.+|.+... .+...
T Consensus 11 ~~~k~G~L~kk~~~~~G~~~~k~Wk~rwfvL~~~~L~yykd~~~~~~~~~~~~~~~~p~g~I~L~~~~v~~~---~~~~k 87 (129)
T 2p0d_A 11 EVEKSGLLNMTKIAQGGRKLRKNWGPSWVVLTGNSLVFYREPPPTAPSSGWGPAGSRPESSVDLRGAALAHG---RHLSS 87 (129)
T ss_dssp SEEEEEEEEEEEEEETTEECCCCCEEEEEEEESSEEEEESCC--------------CCSEEEECTTCEEEEC---TTSCS
T ss_pred ceeEEEEEEEeeeccCCCcCCCCceEEEEEEeCCEEEEEcCcccccccccccccCCCCccEEEeCCcEEEEC---CCCCC
Confidence 389999999852 22 12489999999999999999999853211 112334577777765432 12345
Q ss_pred CcceEEEEecCCCCceeEEEecchhhHHHHHHHHHhhhcc
Q 002835 152 KKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQ 191 (875)
Q Consensus 152 KK~~FvI~~~~~dgrty~fQAdSEeE~~eWI~AI~~ai~~ 191 (875)
++++|.|.+ .++++|+|||++++||++||.||+.+|..
T Consensus 88 r~~~F~l~t--~~~~~yl~qA~s~~e~~~Wi~aI~~~i~~ 125 (129)
T 2p0d_A 88 RRNVLHIRT--IPGHEFLLQSDHETELRAWHRALRTVIER 125 (129)
T ss_dssp SSSEEEEEC--TTSCEEEEECSCHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEc--CCCCEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 778888874 46789999999999999999999999853
No 24
>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A
Probab=99.61 E-value=3.2e-15 Score=141.38 Aligned_cols=99 Identities=27% Similarity=0.433 Sum_probs=78.6
Q ss_pred EEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecC-
Q 002835 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDG- 162 (875)
Q Consensus 84 v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~- 162 (875)
|+++|||+++..+....+|++|||||++.+|+|||++.+.. +...+.|.++.++...+- ...+++||.+....
T Consensus 12 VirkGWL~k~~~g~~k~~wk~rWFVLt~~~L~yyKd~~eke----~~G~IpL~~~~vr~v~~~--~~~rk~~F~l~~~d~ 85 (125)
T 1dyn_A 12 VIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKE----KKYMLSVDNLKLRDVEKG--FMSSKHIFALFNTEQ 85 (125)
T ss_dssp EEEEEEEEESCCCGGGTSSEEEEEEEESSEEEEESSTTCSC----EEEEEECTTEEEEECCSC--SSSSCEEEEEEETTS
T ss_pred eEEEEEEEEecCccccCCceeeEEEEeccceeeecCCcccc----cceEEECCCceEeccCCC--CCCCceEEEEECCCC
Confidence 99999999977666433599999999999999999988653 335688888888764321 12688999998753
Q ss_pred C----CCceeEEEecchhhHHHHHHHHHhh
Q 002835 163 R----DGRAFTLKAESLEDLYDWKTALENA 188 (875)
Q Consensus 163 ~----dgrty~fQAdSEeE~~eWI~AI~~a 188 (875)
+ +.++|.|.|+|.+|+..|+.+|..|
T Consensus 86 r~v~~~h~~y~LsA~t~ee~~~Wi~s~~ra 115 (125)
T 1dyn_A 86 RNVYKDYRQLELACETQEEVDSWKASFLRA 115 (125)
T ss_dssp SCSSTTCSSEEEEESSHHHHHHHHHHHHHT
T ss_pred ccccccceEEEEeCCCHHHHHHHHHHHHhC
Confidence 2 4569999999999999999999544
No 25
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}
Probab=99.61 E-value=6e-15 Score=146.47 Aligned_cols=109 Identities=17% Similarity=0.219 Sum_probs=77.5
Q ss_pred CCCcEEEEeeeEeecCC---CCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeee---cCCCceeeecCCc
Q 002835 80 AGNAVFKSGPLFISSKG---IGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDL---NNSGSVVVKADKK 153 (875)
Q Consensus 80 ~~~~v~KEGyL~k~kKg---~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l---~~s~sv~~~~~KK 153 (875)
-...+++||||+|+..+ .+.++|++|||||+++.|.||+++.+.....| .+.|..+.. ...........++
T Consensus 11 m~~~~i~EG~L~Kr~~~kk~~~~knWKkRwFVL~~~~L~Yyk~~~~~~~~~G---~I~L~~~~~v~~~~~~~~~~~~~~~ 87 (164)
T 2lul_A 11 MNFNTILEEILIKRSQQKKKTSPLNYKERLFVLTKSMLTYYEGRAEKKYRKG---FIDVSKIKCVEIVKNDDGVIPCQNK 87 (164)
T ss_dssp CCSSEEEEEEEEEECCCCSSSCCCCEEEEEEEEESSEEEEECCCSSSCCCCC---EEEGGGCCEEEECCCCSSSCCSSSC
T ss_pred CCCCeeEEEEEEEecCCCCCCCCCCceeEEEEEECCEEEEEeccCccccccc---EEEEeeeEEEEeccccccCcccccc
Confidence 34459999999997653 34578999999999999999998765433332 233443321 1111111123467
Q ss_pred ceEEEEecCCCCceeEEEecchhhHHHHHHHHHhhhccCCC
Q 002835 154 LLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAPS 194 (875)
Q Consensus 154 ~~FvI~~~~~dgrty~fQAdSEeE~~eWI~AI~~ai~~aP~ 194 (875)
++|.|... .++|+|+|+|++|+.+||.||+.++...++
T Consensus 88 ~~f~i~t~---~rt~~l~A~s~~e~~~Wi~aL~~~i~~n~~ 125 (164)
T 2lul_A 88 YPFQVVHD---ANTLYIFAPSPQSRDLWVKKLKEEIKNNNN 125 (164)
T ss_dssp SEEEEECS---SCEEEEECSSHHHHHHHHHHHHHHHTTCSC
T ss_pred eeEEEecC---CcEEEEECCCHHHHHHHHHHHHHHHHHChh
Confidence 88888765 789999999999999999999999975544
No 26
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}
Probab=99.61 E-value=1.9e-15 Score=135.04 Aligned_cols=92 Identities=17% Similarity=0.326 Sum_probs=71.3
Q ss_pred EEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecCC
Q 002835 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGR 163 (875)
Q Consensus 84 v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~~ 163 (875)
|.|+|||++++. ..++|++|||||+++.|.||+++.+... .+...+.+..|.+.. ....+++|.|...
T Consensus 1 V~k~G~L~K~g~--~~k~WkkR~FvL~~~~L~Yy~~~~~~~~--~~~~~i~l~~~~~~~------~~~~~~~F~i~~~-- 68 (94)
T 2rsg_A 1 VERCGVLSKWTN--YIHGWQDRWVVLKNNALSYYKSEDETEY--GCRGSICLSKAVITP------HDFDECRFDISVN-- 68 (94)
T ss_dssp CCEEEEEEEESS--STTCEEEEEEEEETTEEEEESSTTGGGT--CCSEEEETTTCEEEE------CSSCSSEEEEEET--
T ss_pred CCEEEEEEEeCC--CCCCceEEEEEEECCEEEEEEecccccc--cceeeEecceeeeec------CcccceeEEEEeC--
Confidence 569999998754 4589999999999999999998765422 122335555555432 3456788998875
Q ss_pred CCceeEEEecchhhHHHHHHHHHhh
Q 002835 164 DGRAFTLKAESLEDLYDWKTALENA 188 (875)
Q Consensus 164 dgrty~fQAdSEeE~~eWI~AI~~a 188 (875)
+++|+|+|+|++|+.+||.||+.|
T Consensus 69 -~r~~~l~A~s~~e~~~Wi~aLq~A 92 (94)
T 2rsg_A 69 -DSVWYLRAQDPDHRQQWIDAIEQH 92 (94)
T ss_dssp -TEEEEEECCSSCCTHHHHHHHHHH
T ss_pred -CeEEEEECCCHHHHHHHHHHHHhh
Confidence 799999999999999999999876
No 27
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=99.60 E-value=3.4e-15 Score=136.75 Aligned_cols=99 Identities=17% Similarity=0.301 Sum_probs=75.9
Q ss_pred EEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecCC
Q 002835 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGR 163 (875)
Q Consensus 84 v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~~ 163 (875)
+.++|||++++.+ .+.|++|||||+++.|+||+++.+..+. ..+.|..|.+.... ....+++||.|...
T Consensus 8 ~~~~G~L~K~~~~--~~~Wk~RwfvL~~~~L~yyk~~~~~~~~----~~i~L~~~~~~~~~---~~~~~~~~F~i~~~-- 76 (109)
T 1wgq_A 8 STMSGYLYRSKGS--KKPWKHLWFVIKNKVLYTYAASEDVAAL----ESQPLLGFTVTLVK---DENSESKVFQLLHK-- 76 (109)
T ss_dssp CSCEEEEEEESST--TSCCEEEEEEEETTEEEEESCTTCSSCS----EEEECSSEEEEECC---CSSCSSSEEEEEET--
T ss_pred CeEEEEEEeCCCC--CCCceeEEEEEeCCEEEEECCCCcCccC----ceEECCCCEEEECC---CCCCCCcEEEEEeC--
Confidence 6799999987543 5899999999999999999988765332 34666666654321 12235689988753
Q ss_pred CCceeEEEecchhhHHHHHHHHHhhhccCC
Q 002835 164 DGRAFTLKAESLEDLYDWKTALENALAQAP 193 (875)
Q Consensus 164 dgrty~fQAdSEeE~~eWI~AI~~ai~~aP 193 (875)
++++|+|+|++++++..||.+|+.++...|
T Consensus 77 ~~~~~~~~a~s~~e~~~Wi~al~~a~~~~~ 106 (109)
T 1wgq_A 77 GMVFYVFKADDAHSTQRWIDAFQEGTVSGP 106 (109)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHHHHHSCCC
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHhccCC
Confidence 457899999999999999999999986544
No 28
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Probab=99.60 E-value=2.8e-15 Score=142.04 Aligned_cols=104 Identities=22% Similarity=0.398 Sum_probs=77.1
Q ss_pred cEEEEeeeEee-----cCCCCccCceeEEEEEeCCeEEEecCCCCCCCCC--------CccceeecCCeeecCCCceeee
Q 002835 83 AVFKSGPLFIS-----SKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQK--------GSEVNLTLGGIDLNNSGSVVVK 149 (875)
Q Consensus 83 ~v~KEGyL~k~-----kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~--------g~e~~i~L~~~~l~~s~sv~~~ 149 (875)
.|.|+|||++. +++...++|+++||||+++.|+|||+.+...+.+ .+...+.|.+|.+.... .+.
T Consensus 7 ~v~keG~L~rK~~~~~gkk~~~r~W~~~w~VL~~~~L~~yKd~~~~~~~~~~~~~~~~~~~~~i~L~~a~v~~~~--~d~ 84 (124)
T 3pp2_A 7 TLDKAGVLHRTKTADKGKRLRKKHWSASWTVLEGGVLTFFKDSKTSAAGGLRQPSKFSTPEYTVELRGATLSWAP--KDK 84 (124)
T ss_dssp --CEEEEEEEEEEEETTEECSSCCCEEEEEEEETTEEEEESCSBCC---CBCCGGGGCSEEEEEECTTCEEEECC--GGG
T ss_pred cEEEEEEEEEEEeccCCccCCCCCceEEEEEEECCEEEEEecCccccccCccCcccccCCcceEEcCCCEEEecc--ccc
Confidence 38999999975 3444457999999999999999999987653211 24455777776654321 023
Q ss_pred cCCcceEEEEecCCCCceeEEEecchhhHHHHHHHHHhhhc
Q 002835 150 ADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 150 ~~KK~~FvI~~~~~dgrty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
..++++|.|.+ .+|++|+|||+++++|..||.+|..+|.
T Consensus 85 ~krk~vF~l~t--~~~~~ylfqA~s~~e~~~Wi~aI~~aI~ 123 (124)
T 3pp2_A 85 SSRKNVLELRS--RDGSEYLIQHDSEAIISTWHKAIAQGIQ 123 (124)
T ss_dssp CSSSSEEEEEC--TTSCEEEEECSCHHHHHHHHHHHHHHHC
T ss_pred CCCceEEEEEC--CCCCEEEEECCCHHHHHHHHHHHHHHHh
Confidence 45788888774 4689999999999999999999999984
No 29
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B
Probab=99.58 E-value=7e-15 Score=136.75 Aligned_cols=99 Identities=21% Similarity=0.372 Sum_probs=71.6
Q ss_pred EEEeeeEeecCC--CCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecC
Q 002835 85 FKSGPLFISSKG--IGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDG 162 (875)
Q Consensus 85 ~KEGyL~k~kKg--~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~ 162 (875)
+|+|||.++..+ ...++|++|||||+++.|+|||+..+..|. ..+.|.++.+... ...+...+++||.|...
T Consensus 1 tkeG~L~kK~g~~~~~~k~Wk~rwfvL~~~~L~~yk~~~~~~p~----~~i~l~~~~~~~~-~~~~~~~r~~~F~l~~~- 74 (112)
T 3cxb_B 1 TKEGMLHYKAGTSYLGKEHWKTCFVVLSNGILYQYPDRTDVIPL----LSVNMGGEQCGGC-RRANTTDRPHAFQVILS- 74 (112)
T ss_dssp CEEEEEEECCSCCCSSCCCCEEEEEEEETTEEEEESSSSCCSCS----EEEETTC-CEEEE-EECCCSSCTTEEEEEET-
T ss_pred CceEEEEEeCCCCCCCCCCceEEEEEEECCEEEEECCCCCCCcc----ceEEecCCEEEee-eccCCCCCCeEEEEEcC-
Confidence 489999865322 257999999999999999999998765432 2344443221100 00123467899998743
Q ss_pred CCCceeEEEecchhhHHHHHHHHHhhhc
Q 002835 163 RDGRAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 163 ~dgrty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
++++|+|+|+|+++|++||.+|+.++.
T Consensus 75 -~~~~y~f~A~s~ee~~~Wi~ai~~~~~ 101 (112)
T 3cxb_B 75 -DRPCLELSAESEAEMAEWMQHLCQAVS 101 (112)
T ss_dssp -TSCCEEEECSSHHHHHHHHHHHHHHHT
T ss_pred -CCCEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 478999999999999999999999985
No 30
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.58 E-value=8.5e-15 Score=134.76 Aligned_cols=105 Identities=20% Similarity=0.385 Sum_probs=78.5
Q ss_pred cEEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecC
Q 002835 83 AVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDG 162 (875)
Q Consensus 83 ~v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~ 162 (875)
.++++|||++++. ..+.|++|||||+++.|+||++..+..+. -.+.|..|.+..... .....++++|.|....
T Consensus 7 ~~~~~G~L~K~g~--~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~----g~i~L~~~~v~~~~~-~~~~~~~~~f~i~~~~ 79 (118)
T 1v89_A 7 GPIKMGWLKKQRS--IVKNWQQRYFVLRAQQLYYYKDEEDTKPQ----GCMYLPGCTIKEIAT-NPEEAGKFVFEIIPAS 79 (118)
T ss_dssp CEEEEEEEEEECS--SSSCEEEEEEEEETTEEEEESSSSCCSCS----EEECSTTEEEEEECC-CSSCCCCCEEEEEESC
T ss_pred CCcEEEEEEecCC--CCCCccEEEEEEECCEEEEEeCCCCCCce----EEEECCCCEEEEcCc-CcccCCcceEEEECCc
Confidence 4899999998754 35899999999999999999988764332 235666666542110 0123467899988632
Q ss_pred -----CCCceeEEEecchhhHHHHHHHHHhhhccCCC
Q 002835 163 -----RDGRAFTLKAESLEDLYDWKTALENALAQAPS 194 (875)
Q Consensus 163 -----~dgrty~fQAdSEeE~~eWI~AI~~ai~~aP~ 194 (875)
..+++|+|+|++++|+..||.+|+.++...|+
T Consensus 80 ~~~~~~~~~~~~l~a~s~~e~~~Wi~al~~~~~~~~~ 116 (118)
T 1v89_A 80 WDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAGSGPS 116 (118)
T ss_dssp CSSCCSSCCCEEEECSSHHHHHHHHHHHHHHHHCCSC
T ss_pred cccccCCCcEEEEECCCHHHHHHHHHHHHHHHccCCC
Confidence 24789999999999999999999999975553
No 31
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1
Probab=99.58 E-value=2.3e-15 Score=141.38 Aligned_cols=103 Identities=16% Similarity=0.213 Sum_probs=75.2
Q ss_pred cEEEEeeeEeecC------CCCccCceeEEEEEeCCeEEEecCCCCCCCCCC----ccceeecCCeeecCCCceeeecCC
Q 002835 83 AVFKSGPLFISSK------GIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKG----SEVNLTLGGIDLNNSGSVVVKADK 152 (875)
Q Consensus 83 ~v~KEGyL~k~kK------g~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g----~e~~i~L~~~~l~~s~sv~~~~~K 152 (875)
.+.|+|||+++.. +...++|++|||||+++.|+|||++.+..+..+ ++..+.|.+|.+... .+...+
T Consensus 7 ~v~k~G~L~rK~~~~~~gkk~~~~~Wk~rw~vL~~~~L~~yk~~~~~~~~~~~~~~~~~~i~L~~~~v~~~---~d~~kr 83 (122)
T 1dro_A 7 GEGHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTFRGEPSYDLQNAAIEIA---SDYTKK 83 (122)
T ss_dssp SSSEEEEEEEECSCCCCCCTTCCCCCEEEEEEESSSCCBEESSSSHHHHCTTCCSSCCCBCCCSSCCCEEC---CSSSSS
T ss_pred ceEEEEEEEEEEEEeCCCccCCCCCccEEEEEEECCEEEEEeCCcccccCCCcccCCCceEECCCCEEEeC---CCCCCC
Confidence 3789999987532 225799999999999999999999875432111 112355555543321 123457
Q ss_pred cceEEEEecCCCCceeEEEecchhhHHHHHHHHHhhhc
Q 002835 153 KLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 153 K~~FvI~~~~~dgrty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
+++|.|.+ .++++|+|||++++||++||.||+.++.
T Consensus 84 ~~~F~l~t--~~~~~~lfqA~s~~e~~~Wi~ai~~~i~ 119 (122)
T 1dro_A 84 KHVLRVKL--ANGALFLLQAHDDTEMSQWVTSLKAQSD 119 (122)
T ss_dssp TTEEEEEC--SSSCEEEEECSSSHHHHHHHHHHHHHHT
T ss_pred CeEEEEEE--cCCCEEEEECCCHHHHHHHHHHHHHHHH
Confidence 78898873 3589999999999999999999999985
No 32
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.58 E-value=7.3e-15 Score=139.77 Aligned_cols=103 Identities=23% Similarity=0.381 Sum_probs=71.2
Q ss_pred cEEEEeeeEeecCCCCccCceeEEEEE-eCCeEEEecCCCCCCCCCCccceeecCCeeecC---CCce--eeecCCcceE
Q 002835 83 AVFKSGPLFISSKGIGWTSWKKRWFIL-THTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNN---SGSV--VVKADKKLLT 156 (875)
Q Consensus 83 ~v~KEGyL~k~kKg~~~ksWkKRWfVL-~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~---s~sv--~~~~~KK~~F 156 (875)
.++++|||++++. ..+.|++||||| +++.|+||++..+..+.+ .+.+....+.+.. +..+ .....++++|
T Consensus 7 ~v~~~G~L~K~g~--~~k~WkkRwFVL~~~~~L~Yyk~~~~~~~~g--~i~l~~~~~~i~~~~~~~~v~~~~~~~~~~~F 82 (130)
T 2d9v_A 7 GLVRGGWLWRQSS--ILRRWKRNWFALWLDGTLGYYHDETAQDEED--RVVIHFNVRDIKVGQECQDVQPPEGRSRDGLL 82 (130)
T ss_dssp CEEEEEEEEEECS--SSCCEEEEEEEEETTTEEEEESSSSTTSEEE--EEECTTTEEEEEEGGGCSSCCCCSSCCTTTEE
T ss_pred ceeEEEEEEeecC--ccCCceeeEEEEccCCEEEEEeCCCCCCcCc--eEecccceeEEeccccccccCCCCCCCcCcEE
Confidence 4899999998754 458999999999 899999999887542211 1111111111110 0001 1123567899
Q ss_pred EEEecCCCCceeEEEecchhhHHHHHHHHHhhhcc
Q 002835 157 VLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQ 191 (875)
Q Consensus 157 vI~~~~~dgrty~fQAdSEeE~~eWI~AI~~ai~~ 191 (875)
.|... ++++|+|+|++++||++||.||+.++..
T Consensus 83 ~I~~~--~~r~~~l~A~s~~e~~~Wi~al~~a~~~ 115 (130)
T 2d9v_A 83 TVNLR--EGSRLHLCAETRDDAIAWKTALMEANST 115 (130)
T ss_dssp EEEET--TSCEEEEECSSHHHHHHHHHHHHHHHTC
T ss_pred EEEeC--CCCEEEEEcCCHHHHHHHHHHHHHHHcC
Confidence 98863 4789999999999999999999999853
No 33
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=2e-14 Score=133.64 Aligned_cols=100 Identities=22% Similarity=0.330 Sum_probs=74.9
Q ss_pred cEEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecC
Q 002835 83 AVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDG 162 (875)
Q Consensus 83 ~v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~ 162 (875)
.++++|||++++.+. .+.|++|||||+++.|+||++..+..+. -.+.|..|.+..... .....+++||.|..
T Consensus 21 ~~~~~G~L~K~~~~~-~~~Wk~R~fvL~~~~L~yy~~~~~~~~~----g~i~L~~~~v~~~~~-~~~~~~~~~F~i~~-- 92 (122)
T 2yry_A 21 PVTKAGWLFKQASSG-VKQWNKRWFVLVDRCLFYYKDEKEESIL----GSIPLLSFRVAAVQP-SDNISRKHTFKAEH-- 92 (122)
T ss_dssp CEEEEEEEEEECCSS-SCCEEEEEEEEETTEEEEESSTTCCSCC----EEEESTTCCCEECCT-TCSCSSSSEEEEEC--
T ss_pred CccEEEEEEEECCCC-CCCcEEEEEEEeCCEEEEECCCCCCCcc----cEEEcCCCEEEEcCc-cccCCcccEEEEec--
Confidence 489999999876433 5899999999999999999988765332 235556554332111 11235778998863
Q ss_pred CCCceeEEEecchhhHHHHHHHHHhhhc
Q 002835 163 RDGRAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 163 ~dgrty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
.++++|+|+|++++++..||.+|+.++.
T Consensus 93 ~~~r~~~l~a~s~~e~~~Wi~al~~a~~ 120 (122)
T 2yry_A 93 AGVRTYFFSAESPEEQEAWIQAMGEAAR 120 (122)
T ss_dssp SSSCEEEEECSSHHHHHHHHHHHHHHHC
T ss_pred CCCcEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 2468999999999999999999999873
No 34
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.57 E-value=3.9e-15 Score=136.43 Aligned_cols=95 Identities=20% Similarity=0.286 Sum_probs=75.0
Q ss_pred EEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecCC
Q 002835 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGR 163 (875)
Q Consensus 84 v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~~ 163 (875)
+.++|||+++ ..+.|++|||||+++.|+||++.... ..+...+.+.+|.+.... ...+++||.|...
T Consensus 8 ~~~~G~L~K~----~~k~Wk~RwfvL~~~~L~yyk~~~~~---~~~~~~i~l~~~~v~~~~----~~~~~~~F~i~~~-- 74 (107)
T 2cof_A 8 LETSSYLNVL----VNSQWKSRWCSVRDNHLHFYQDRNRS---KVAQQPLSLVGCEVVPDP----SPDHLYSFRILHK-- 74 (107)
T ss_dssp CTTCCEEEEE----ETTEEEEEEEEECSSCEEEECSSTTC---SEEEEEECTTTCEEECCC----BTTBSCEEEEEET--
T ss_pred CcEeEEEEEe----cCCCcceEEEEEECCEEEEEeCCccc---CCCeeEEeccceEEEECC----CCCCCeEEEEEeC--
Confidence 6799999988 45899999999999999999988652 223355667777554321 2457789988763
Q ss_pred CCceeEEEecchhhHHHHHHHHHhhhcc
Q 002835 164 DGRAFTLKAESLEDLYDWKTALENALAQ 191 (875)
Q Consensus 164 dgrty~fQAdSEeE~~eWI~AI~~ai~~ 191 (875)
++++|+|+|++++|+..||.||+.++..
T Consensus 75 ~~r~~~l~A~s~~e~~~Wi~al~~~~~~ 102 (107)
T 2cof_A 75 GEELAKLEAKSSEEMGHWLGLLLSESGS 102 (107)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHHHHSSC
T ss_pred CCeEEEEEcCCHHHHHHHHHHHHHHHcC
Confidence 3689999999999999999999998853
No 35
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1
Probab=99.57 E-value=8.2e-15 Score=135.10 Aligned_cols=103 Identities=18% Similarity=0.376 Sum_probs=75.8
Q ss_pred cEEEEeeeEeecCCCCccCceeEEEEEe--CCeEEEecCCCCCCCCCCccceeecCCeeecCCCc----eeeecCCcceE
Q 002835 83 AVFKSGPLFISSKGIGWTSWKKRWFILT--HTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGS----VVVKADKKLLT 156 (875)
Q Consensus 83 ~v~KEGyL~k~kKg~~~ksWkKRWfVL~--~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~s----v~~~~~KK~~F 156 (875)
.++++|||++++.. .+.|++|||||+ ++.|+||++..+..+.+ .+.|..|....... ......++++|
T Consensus 7 ~~~~~G~L~K~g~~--~~~Wk~R~fvL~~~~~~L~yy~~~~~~~~~g----~i~L~~~~~v~~~~~~~~~~~~~~~~~~F 80 (117)
T 1v5u_A 7 GRSYEGILYKKGAF--MKPWKARWFVLDKTKHQLRYYDHRMDTECKG----VIDLAEVEAVAPGTPTIGAPKTVDEKAFF 80 (117)
T ss_dssp SSSEEEEEEECCCS--SSCCEEEEEEEETTTTEEEEESSSSCSSCCC----EEEGGGEEEEECCCCCTTSCSSSCTTTCE
T ss_pred CccEEEEEEecCCC--CCCceeeEEEEECCCCEEEEeecCCCCccce----EEEccCcEEEeecCccccccccCCCCeEE
Confidence 37899999886543 589999999999 88999999887654322 35555554321100 00123466899
Q ss_pred EEEecCCCCceeEEEecchhhHHHHHHHHHhhhccCCC
Q 002835 157 VLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAPS 194 (875)
Q Consensus 157 vI~~~~~dgrty~fQAdSEeE~~eWI~AI~~ai~~aP~ 194 (875)
.|... +++|+|+|++++++..||.+|+.++..+|+
T Consensus 81 ~i~~~---~r~~~l~a~s~~e~~~Wi~al~~~i~~~~~ 115 (117)
T 1v5u_A 81 DVKTT---RRVYNFCAQDVPSAQQWVDRIQSCLSSGPS 115 (117)
T ss_dssp EEEES---SCEEEEECSSHHHHHHHHHHHHTTCCCCCC
T ss_pred EEECC---CceEEEECCCHHHHHHHHHHHHHHhccCCC
Confidence 99765 799999999999999999999999976554
No 36
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Probab=99.57 E-value=7.2e-15 Score=132.92 Aligned_cols=102 Identities=22% Similarity=0.367 Sum_probs=76.7
Q ss_pred cEEEEeeeEeecCCC--CccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEe
Q 002835 83 AVFKSGPLFISSKGI--GWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFP 160 (875)
Q Consensus 83 ~v~KEGyL~k~kKg~--~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~ 160 (875)
.++++|||++++.+. ..+.|++|||||+++.|+||+++.+..+. -.+.|..|.+...........+.+||.|..
T Consensus 2 ~v~~~G~L~K~~~~~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~----g~i~L~~~~v~~~~~~~~~~~~~~~F~i~~ 77 (108)
T 1u5d_A 2 SVIKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQPK----GTFLIKGYSVRMAPHLRRDSKKESCFELTS 77 (108)
T ss_dssp CEEEEEEEEEEEECSSSSCEEEEEEEEEEETTEEEEESSTTCSSCS----EEEECTTCEEEECGGGCSSGGGGGEEEEEC
T ss_pred CccEEEEEEEcCCCCCccccCceeeEEEEeCCEEEEecCCCCCCCC----EEEEecceEEEeCCccccccCCcceEEEEc
Confidence 389999999987653 34899999999999999999988764332 235566666443211111235678999885
Q ss_pred cCCCCceeEEEecchhhHHHHHHHHHhhhc
Q 002835 161 DGRDGRAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 161 ~~~dgrty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
. ++++|+|+|+|++|+..|+.+|+.++.
T Consensus 78 ~--~~r~~~l~a~s~~e~~~Wi~ai~~~i~ 105 (108)
T 1u5d_A 78 Q--DRRTYEFTATSPAEARDWVDQISFLLK 105 (108)
T ss_dssp S--SSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred C--CCcEEEEECCCHHHHHHHHHHHHHHHH
Confidence 4 458999999999999999999999884
No 37
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.1e-14 Score=135.12 Aligned_cols=94 Identities=22% Similarity=0.311 Sum_probs=73.0
Q ss_pred EEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecCC
Q 002835 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGR 163 (875)
Q Consensus 84 v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~~ 163 (875)
+.++|||+++..+ ..+.|++|||||+++.|+||++.... +. ..+.+..|.+. ...++++||.|...
T Consensus 10 ~~~~G~L~K~~~~-~~k~WkkR~fvL~~~~L~yyk~~~~~-~~----~~i~l~~~~v~------~~~~~~~~F~I~~~-- 75 (114)
T 2da0_A 10 SEKKGYLLKKSDG-IRKVWQRRKCSVKNGILTISHATSNR-QP----AKLNLLTCQVK------PNAEDKKSFDLISH-- 75 (114)
T ss_dssp SCEEEEEEEECSS-SCCCEEEEEEEEETTEEEECCSSCCS-CC----EEEETTTSEEE------ECSSSSSCEEEEET--
T ss_pred ccEEEEEEEeCCC-CCCCceeEEEEEeCCEEEEEcCCCCC-CC----CEEEeeeeEEE------ECCCCCCEEEEEcC--
Confidence 7899999988754 34899999999999999999986543 21 22334444333 22457789999865
Q ss_pred CCceeEEEecchhhHHHHHHHHHhhhccC
Q 002835 164 DGRAFTLKAESLEDLYDWKTALENALAQA 192 (875)
Q Consensus 164 dgrty~fQAdSEeE~~eWI~AI~~ai~~a 192 (875)
+++|+|+|+|++|+..||.||+.++..+
T Consensus 76 -~r~~~l~a~s~~e~~~Wi~al~~~~~~~ 103 (114)
T 2da0_A 76 -NRTYHFQAEDEQDYVAWISVLTNSKEEA 103 (114)
T ss_dssp -TEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred -CcEEEEEcCCHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999988643
No 38
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.57 E-value=1.2e-14 Score=133.70 Aligned_cols=100 Identities=16% Similarity=0.330 Sum_probs=75.6
Q ss_pred EEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecCC
Q 002835 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGR 163 (875)
Q Consensus 84 v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~~ 163 (875)
++++|||++++. ..++|++|||||+++.|+||++..+..+. -.+.|..|.+.... .....+.+||.|...
T Consensus 5 ~~~~G~L~K~g~--~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~----g~i~L~~~~~~~~~--~~~~~~~~~F~i~~~-- 74 (113)
T 1pls_A 5 RIREGYLVKKGS--VFNTWKPMWVVLLEDGIEFYKKKSDNSPK----GMIPLKGSTLTSPC--QDFGKRMFVFKITTT-- 74 (113)
T ss_dssp CSEEEEEEEESS--SSSCCEEEEEEEETTEEEEESSTTCSSCS----EEEESSSCCEESSC--CSSCCSSSEEEEEET--
T ss_pred CcEEEEEEEeCC--CCCCceEEEEEEECCEEEEEeCCCCCCcc----eEEEcCCCEEEEec--CCCCCCccEEEEEcC--
Confidence 789999987654 45899999999999999999988654332 23556665543210 123457789998764
Q ss_pred CCceeEEEecchhhHHHHHHHHHhhhccCC
Q 002835 164 DGRAFTLKAESLEDLYDWKTALENALAQAP 193 (875)
Q Consensus 164 dgrty~fQAdSEeE~~eWI~AI~~ai~~aP 193 (875)
++++|+|+|+|++|+..||.+|+.++...+
T Consensus 75 ~~r~~~l~a~s~~e~~~Wi~ai~~~~~~~~ 104 (113)
T 1pls_A 75 KQQDHFFQAAFLEERDAWVRDINKAIKCIE 104 (113)
T ss_dssp TTEEEEEECSSHHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHhccc
Confidence 468999999999999999999999986543
No 39
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=6.3e-15 Score=137.84 Aligned_cols=95 Identities=20% Similarity=0.249 Sum_probs=73.5
Q ss_pred EEEEeeeEeecCCCCccCceeEEEEEeCC--eEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEec
Q 002835 84 VFKSGPLFISSKGIGWTSWKKRWFILTHT--SLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPD 161 (875)
Q Consensus 84 v~KEGyL~k~kKg~~~ksWkKRWfVL~~~--sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~ 161 (875)
+.++|||++++.+...+.|++|||||+++ .|+||++..+..+. -.+.|..|.+.. ....++++|.|...
T Consensus 8 ~~~~G~L~K~g~~~~~k~WkkRwfvL~~~~~~L~Yy~~~~~~~~~----g~I~L~~~~~~~-----~~~~~~~~F~i~~~ 78 (119)
T 2dhk_A 8 KKLCGYLSKFGGKGPIRGWKSRWFFYDERKCQLYYSRTAQDANPL----DSIDLSSAVFDC-----KADAEEGIFEIKTP 78 (119)
T ss_dssp CCCEEEEEECSCSSSSCCCEEEEEEEETTTTEEEEESSTTCCSCS----EEEEGGGCEEEE-----CTTGGGCEEEEECS
T ss_pred CcEEEEEEecCCCCCCCCceeEEEEEECCccEEEEECCCCCcccc----cEEECCCCEEEe-----cCCCCCCEEEEEeC
Confidence 67999999877644568999999999999 99999988765332 234455544332 12346778988765
Q ss_pred CCCCceeEEEecchhhHHHHHHHHHhhhc
Q 002835 162 GRDGRAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 162 ~~dgrty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
+|+|+|+|++++|+..||.+|+.++.
T Consensus 79 ---~r~~~l~a~s~~e~~~Wi~al~~~~~ 104 (119)
T 2dhk_A 79 ---SRVITLKAATKQAMLYWLQQLQMKRW 104 (119)
T ss_dssp ---SCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred ---CcEEEEECCCHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999874
No 40
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.57 E-value=1.1e-14 Score=136.34 Aligned_cols=96 Identities=19% Similarity=0.230 Sum_probs=75.6
Q ss_pred EEEEeeeEeecCCCCccCceeEEEEEeCC---eEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEe
Q 002835 84 VFKSGPLFISSKGIGWTSWKKRWFILTHT---SLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFP 160 (875)
Q Consensus 84 v~KEGyL~k~kKg~~~ksWkKRWfVL~~~---sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~ 160 (875)
+.+.|||+++++ .+.|+||||||+++ .|+||++..+..+. ..+.|.+|.+..... ....++++||.|..
T Consensus 8 ~~~~G~L~k~~~---~~~WkkrWfVL~~~~~~~Ly~Yk~~~d~~p~----g~I~L~g~~V~~~~~-~~~~~~~~~Fki~~ 79 (112)
T 2coc_A 8 SLLCGPLRLSES---GETWSEVWAAIPMSDPQVLHLQGGSQDGRLP----RTIPLPSCKLSVPDP-EERLDSGHVWKLQW 79 (112)
T ss_dssp SSSEEEEEEESS---SSCEEEEEEECCTTCTTCEEEECCTTCSSSC----SEECGGGCEEECCCS-SSCCSSSEEEEEEE
T ss_pred ceEEEEEEecCC---CCCceEEEEEEECCCccEEEEECCCCccCcc----eEEEcCCCEEEecCc-ccccCCCCEEEEec
Confidence 557799999654 58999999999985 79999998876443 357777887774221 12345889999885
Q ss_pred cCCCCceeEEEecchhhHHHHHHHHHhhhc
Q 002835 161 DGRDGRAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 161 ~~~dgrty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
. +++|+|+|+|+++|..||.+|+.|+.
T Consensus 80 ~---~~~y~f~A~s~e~~~~Wl~al~~A~~ 106 (112)
T 2coc_A 80 A---KQSWYLSASSAELQQQWLETLSTAAH 106 (112)
T ss_dssp T---TEEEEEEESSHHHHHHHHHHHHHHHS
T ss_pred C---CeEEEEEcCCHHHHHHHHHHHHHHhc
Confidence 4 78999999999999999999999874
No 41
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Probab=99.56 E-value=2e-14 Score=133.84 Aligned_cols=99 Identities=23% Similarity=0.396 Sum_probs=75.7
Q ss_pred EEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecCC
Q 002835 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGR 163 (875)
Q Consensus 84 v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~~ 163 (875)
++++|||++++.+. .+.|++|||||+++.|+||++..+..+. -.+.|..|.+...... ....+++||.|...
T Consensus 11 ~~~~G~L~K~~~~~-~~~WkkR~fvL~~~~L~yy~~~~~~~~~----g~i~l~~~~v~~~~~~-~~~~~~~~f~i~~~-- 82 (123)
T 1upq_A 11 VHIRGWLHKQDSSG-LRLWKRRWFVLSGHCLFYYKDSREESVL----GSVLLPSYNIRPDGPG-APRGRRFTFTAEHP-- 82 (123)
T ss_dssp EEEEEEEEEECSSS-SCCEEEEEEEEETTEEEEESSTTCCSCC----EEEEGGGCEEEECCSS-CTTSSSSEEEEECT--
T ss_pred ceEEEEEEeeCCCC-CCCceeEEEEEeCCEEEEECCCCCcccc----eEEECCCCEEEECCCC-ccCCCcEEEEEECC--
Confidence 89999999887433 5899999999999999999988765332 2355666655443211 12347788888753
Q ss_pred CCceeEEEecchhhHHHHHHHHHhhhc
Q 002835 164 DGRAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 164 dgrty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
++++|+|+|++++|+..||.+|+.++.
T Consensus 83 ~~r~~~l~a~s~~e~~~Wi~al~~a~~ 109 (123)
T 1upq_A 83 GMRTYVLAADTLEDLRGWLRALGRASR 109 (123)
T ss_dssp TSCCEEEECSSHHHHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHHh
Confidence 458999999999999999999999985
No 42
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=99.56 E-value=9.6e-15 Score=139.23 Aligned_cols=101 Identities=24% Similarity=0.260 Sum_probs=69.1
Q ss_pred EEEEeeeEeecCCCCccCceeEEEEEe---CCeEEEecCC----CCCCCCCCccceeecCCe-eecCCCceeeecCCcce
Q 002835 84 VFKSGPLFISSKGIGWTSWKKRWFILT---HTSLVFFRSD----PSAIPQKGSEVNLTLGGI-DLNNSGSVVVKADKKLL 155 (875)
Q Consensus 84 v~KEGyL~k~kKg~~~ksWkKRWfVL~---~~sL~yYKd~----k~~~p~~g~e~~i~L~~~-~l~~s~sv~~~~~KK~~ 155 (875)
..++|||++++.+. .+.|+||||||+ +..|+||+++ .+..+ .-.+.|..| .+..... .....+++|
T Consensus 15 ~~~~G~L~K~g~~~-~k~WkrRwFvL~~~~~~~L~Y~k~~~~~~~~~~~----~G~I~L~~~~~V~~~~~-~~~~~~~~~ 88 (126)
T 1v5p_A 15 NRICGFLDIEDNEN-SGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGA----VGSLQLTYISKVSIATP-KQKPKTPFC 88 (126)
T ss_dssp CCEECCEEEECTTC-SSCEEEEEEEEETTTTEEEEESSCTTTSCTTCCC----SEEEETTTCCEEEECCT-TTSCSCSSE
T ss_pred CceEEEEEEeCCCC-CCCccceEEEEecCCCCEEEEECCCCCCCCCcee----eEEEECCCccEEecCCc-ccCCCCCEE
Confidence 45899999887443 589999999999 5567788884 22212 122444442 2221110 012356789
Q ss_pred EEEEecCCCCceeEEEecchhhHHHHHHHHHhhhccCC
Q 002835 156 TVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAP 193 (875)
Q Consensus 156 FvI~~~~~dgrty~fQAdSEeE~~eWI~AI~~ai~~aP 193 (875)
|+|... .|+|+|+|+|++||++||.||+.++...|
T Consensus 89 F~i~t~---~r~y~l~A~s~~e~~~Wi~al~~a~~~~~ 123 (126)
T 1v5p_A 89 FVINAL---SQRYFLQANDQKDLKDWVEALNQASKSGP 123 (126)
T ss_dssp EEEECS---SCEEEEECSSHHHHHHHHHHHHHTTTTSS
T ss_pred EEEECC---CEEEEEECCCHHHHHHHHHHHHHHHhcCC
Confidence 987654 69999999999999999999999886444
No 43
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A
Probab=99.56 E-value=7.3e-15 Score=145.18 Aligned_cols=101 Identities=17% Similarity=0.292 Sum_probs=68.0
Q ss_pred EEEEeeeEee--------cCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcce
Q 002835 84 VFKSGPLFIS--------SKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLL 155 (875)
Q Consensus 84 v~KEGyL~k~--------kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~ 155 (875)
+.++|||+++ ++|...+.|++|||||+++.|+||++..+......+.+.+.+..|.+... .....+++|
T Consensus 3 v~~eG~L~~k~~~~~~gkK~g~~~k~WkkRwfvL~~~~L~yyk~~~~~~~~~~g~i~l~~~~~~~~~~---~~~~~~~~~ 79 (168)
T 2j59_M 3 AAKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPISVNACLIDIS---YSETKRKNV 79 (168)
T ss_dssp CCEEEEEEEEECC------------CCEEEEEEEETTEEEEESCTTCC--------CEECSSCEEEEC---SSSCSCSSE
T ss_pred CcEEEEEeeeeecccCCcccCCCCCCceEEEEEEeCCEEEEEECCcccccccCCceEecccceEEEec---cccCCCCCE
Confidence 6899999965 44556799999999999999999999865211112223344433432211 112457889
Q ss_pred EEEEecCCCCceeEEEecchhhHHHHHHHHHhhhc
Q 002835 156 TVLFPDGRDGRAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 156 FvI~~~~~dgrty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
|.|... +++|+|+|++++||..||.+|+.++.
T Consensus 80 F~I~t~---~r~~~l~A~s~~e~~~Wi~ai~~~~~ 111 (168)
T 2j59_M 80 FRLTTS---DCECLFQAEDRDDMLAWIKTIQESSN 111 (168)
T ss_dssp EEEECS---SCEEEEECSSHHHHHHHHHHHHHHCC
T ss_pred EEEEeC---CceEEEEcCCHHHHHHHHHHHHHHHh
Confidence 999865 58999999999999999999999885
No 44
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A
Probab=99.55 E-value=2.3e-14 Score=138.71 Aligned_cols=103 Identities=23% Similarity=0.364 Sum_probs=76.4
Q ss_pred cEEEEeeeEeecCCC--CccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEe
Q 002835 83 AVFKSGPLFISSKGI--GWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFP 160 (875)
Q Consensus 83 ~v~KEGyL~k~kKg~--~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~ 160 (875)
.++++|||++++.+. ..+.|++|||||+++.|+||++..+..+. -.+.|..|.+...........+.+||.|..
T Consensus 16 ~~~~~G~L~K~g~~~~~~~k~WkkR~fvL~~~~L~yyk~~~~~~~~----g~i~L~~~~v~~~~~~~~~~~~~~~F~I~~ 91 (148)
T 1u5f_A 16 FVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQK----GEFAIDGYDVRMNNTLRKDGKKDCCFEICA 91 (148)
T ss_dssp SEEEEEEEEEECCCSSCSSCSEEEEEEEEETTEEEEESSTTCSSCS----EEEECTTCEEEECTTSCSSTTGGGEEEEEC
T ss_pred CccEEEEEEEeCCCCCCcCCCceeEEEEEECCEEEEEcCCCCcccc----eEEEcCCcEEEECCCcccCCCCccEEEEEC
Confidence 489999999987543 45899999999999999999988764332 235566655442211111234568999886
Q ss_pred cCCCCceeEEEecchhhHHHHHHHHHhhhcc
Q 002835 161 DGRDGRAFTLKAESLEDLYDWKTALENALAQ 191 (875)
Q Consensus 161 ~~~dgrty~fQAdSEeE~~eWI~AI~~ai~~ 191 (875)
. ++++|+|+|++++++..||.+|+.++..
T Consensus 92 ~--~~r~~~l~a~s~~e~~~Wi~al~~~i~~ 120 (148)
T 1u5f_A 92 P--DKRIYQFTAASPKDAEEWVQQLKFILQD 120 (148)
T ss_dssp T--TSCEEEEECSSHHHHHHHHHHHHHHCC-
T ss_pred C--CCcEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 4 4589999999999999999999999853
No 45
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*
Probab=99.55 E-value=2e-14 Score=134.11 Aligned_cols=102 Identities=21% Similarity=0.418 Sum_probs=77.4
Q ss_pred cEEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecC
Q 002835 83 AVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDG 162 (875)
Q Consensus 83 ~v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~ 162 (875)
.++++|||++++.+ .++|++|||||+++.|+||++..+..+. -.+.|..|.+... ....+++||.|....
T Consensus 4 ~~~~~G~L~K~g~~--~~~Wk~R~fvL~~~~L~yy~~~~~~~~~----g~i~L~~~~v~~~----~~~~~~~~f~i~~~~ 73 (127)
T 1fgy_A 4 NPDREGWLLKLGGR--VKTWKRRWFILTDNCLYYFEYTTDKEPR----GIIPLENLSIREV----LDPRKPNCFELYNPS 73 (127)
T ss_dssp SCSEEEEEEEECSS--SCCEEEEEEEEETTEEEEESSTTCSSCS----EEEECTTCEEEEE----CCSSCSSEEEEECSS
T ss_pred CCceEeEEEEECCC--CCCeEEEEEEEECCEEEEeCCCCCCCcc----eEEECCceEEEEc----cCCCCCceEEEecCC
Confidence 36899999887544 5899999999999999999987654332 2356666654432 234678899887643
Q ss_pred C-------------------CCceeEEEecchhhHHHHHHHHHhhhccCCC
Q 002835 163 R-------------------DGRAFTLKAESLEDLYDWKTALENALAQAPS 194 (875)
Q Consensus 163 ~-------------------dgrty~fQAdSEeE~~eWI~AI~~ai~~aP~ 194 (875)
. ..++|+|+|+|++|+..||.+|+.++...|.
T Consensus 74 ~~~~~~~~~~~~~~~~~v~~~~r~~~l~a~s~~e~~~Wi~al~~~i~~~~~ 124 (127)
T 1fgy_A 74 HKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISRDPF 124 (127)
T ss_dssp STTCCCCCEEECTTSCEEECCCSEEEEECSSHHHHHHHHHHHHHHHHHCTT
T ss_pred ccccccccccccCCcceecCCceEEEEECCCHHHHHHHHHHHHHHhccCCc
Confidence 2 2479999999999999999999999975553
No 46
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}
Probab=99.55 E-value=3.5e-14 Score=133.10 Aligned_cols=100 Identities=19% Similarity=0.310 Sum_probs=74.5
Q ss_pred cEEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecC
Q 002835 83 AVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDG 162 (875)
Q Consensus 83 ~v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~ 162 (875)
.++++|||++++.+. .+.|++|||||+++.|+||+++.+..+ .-.+.|..|.+..... .....+++||.|...
T Consensus 20 ~~~~~G~L~K~~~~~-~~~Wk~R~fvL~~~~L~yy~~~~~~~~----~g~i~L~~~~v~~~~~-~~~~~~~~~F~i~~~- 92 (128)
T 2dkp_A 20 PVVRRGWLYKQDSTG-MKLWKKRWFVLSDLCLFYYRDEKEEGI----LGSILLPSFQIALLTS-EDHINRKYAFKAAHP- 92 (128)
T ss_dssp CCCEEEEEEEECCSS-SCCEEEEEEEEETTEEEEESSTTCCSE----EEEECGGGSEEEECCG-GGCCSSCSEEEEECS-
T ss_pred CcEEEEEEEEeCCCC-CCCceeEEEEEeCCEEEEECCCCCccc----ceEEEcCceEEEEcCC-cccCCCCeEEEEEcC-
Confidence 488999999876633 589999999999999999998865432 1234455555432211 012357789988753
Q ss_pred CCCceeEEEecchhhHHHHHHHHHhhhc
Q 002835 163 RDGRAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 163 ~dgrty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
++++|+|+|++++|+..||.+|+.++.
T Consensus 93 -~~r~~~l~a~s~~e~~~Wi~al~~a~~ 119 (128)
T 2dkp_A 93 -NMRTYYFCTDTGKEMELWMKAMLDAAL 119 (128)
T ss_dssp -SSCCEEEECSSHHHHHHHHHHHHHHHS
T ss_pred -CCCEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 468999999999999999999999874
No 47
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=3.8e-14 Score=130.56 Aligned_cols=99 Identities=22% Similarity=0.333 Sum_probs=75.0
Q ss_pred EEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecCC
Q 002835 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGR 163 (875)
Q Consensus 84 v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~~ 163 (875)
++++|||++++.+. .+.|++|||||+++.|+||+++.+..+. -.+.|..|.+..... .....++++|.|.. .
T Consensus 11 ~~~~G~L~K~~~~~-~~~Wk~R~fvL~~~~L~yy~~~~~~~~~----g~i~L~~~~v~~~~~-~~~~~~~~~F~i~~--~ 82 (117)
T 2d9y_A 11 VTKAGWLFKQASSG-VKQWNKRWFVLVDRCLFYYKDEKEESIL----GSIPLLSFRVAAVQP-SDNISRKHTFKAEH--A 82 (117)
T ss_dssp CCEEEEEEEECTTS-SSCEEEEEEEEETTEEEEESSTTCCSCC----EEEECSSCEEEECCT-TTTCCCSSEEEEEC--S
T ss_pred eeEEEEEEEeCCCC-CCCceEEEEEECCCEEEEECCCCCCCcC----CEEEeCCeEEEEcCc-cccCCCccEEEEEc--C
Confidence 78999999886433 5899999999999999999988765332 245666665432211 01235778898864 2
Q ss_pred CCceeEEEecchhhHHHHHHHHHhhhc
Q 002835 164 DGRAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 164 dgrty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
++++|+|+|++++|+..||.+|+.++.
T Consensus 83 ~~r~~~l~a~s~~e~~~Wi~al~~~~~ 109 (117)
T 2d9y_A 83 GVRTYFFSAESPEEQEAWIQAMGEAAR 109 (117)
T ss_dssp SSCEEEEECSSHHHHHHHHHHHHHTTC
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 468999999999999999999999984
No 48
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A
Probab=99.54 E-value=2.2e-14 Score=129.95 Aligned_cols=98 Identities=22% Similarity=0.304 Sum_probs=70.5
Q ss_pred EEeeeEeec------CCCCccCceeEEEEEeCCeEEEecCCCCCC--CCCCccceeecCCeeecCCCceeeecCCcceEE
Q 002835 86 KSGPLFISS------KGIGWTSWKKRWFILTHTSLVFFRSDPSAI--PQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTV 157 (875)
Q Consensus 86 KEGyL~k~k------Kg~~~ksWkKRWfVL~~~sL~yYKd~k~~~--p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~Fv 157 (875)
++|||+++. ++...++|++|||||+++.|+||+++.+.. ....+...+.+.+|.+... .....++++|.
T Consensus 1 ~eG~L~kk~~~~~~gk~~~~~~Wk~rwfvL~~~~L~yyk~~~~~~~~~~~~~~~~i~l~~~~~~~~---~~~~~~~~~F~ 77 (106)
T 1btn_A 1 MEGFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEAICEVA---LDYKKKKHVFK 77 (106)
T ss_dssp CEEEEEEEEEECSTTCBCSCCCCEEEEEEEETTEEEEESSHHHHHHTCCSSSCCCEECTTCEEEEC---SSCCSSSSEEE
T ss_pred CccEEEEEEEEeCCCccCCCCChhEEEEEEECCEEEEEeCCcccccCCCCCCcceEECCCCEEEEc---ccccCCccEEE
Confidence 589999876 113568999999999999999999876321 0111233455655543321 12345788998
Q ss_pred EEecCCCCceeEEEecchhhHHHHHHHHHhh
Q 002835 158 LFPDGRDGRAFTLKAESLEDLYDWKTALENA 188 (875)
Q Consensus 158 I~~~~~dgrty~fQAdSEeE~~eWI~AI~~a 188 (875)
|.. .++++|+|+|+|++|+..||.||+.|
T Consensus 78 i~~--~~~~~~~~~A~s~~e~~~Wi~ai~~A 106 (106)
T 1btn_A 78 LRL--SDGNEYLFQAKDDEEMNTWIQAISSA 106 (106)
T ss_dssp EEC--TTSCEEEEECSSHHHHHHHHHHHHHC
T ss_pred EEe--cCCCEEEEECCCHHHHHHHHHHHhcC
Confidence 874 45799999999999999999999864
No 49
>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A
Probab=99.53 E-value=2.1e-14 Score=135.96 Aligned_cols=105 Identities=14% Similarity=0.267 Sum_probs=74.9
Q ss_pred cEEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCC----CCCCC-CccceeecCCeeecCCCceeeecCCcceEE
Q 002835 83 AVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPS----AIPQK-GSEVNLTLGGIDLNNSGSVVVKADKKLLTV 157 (875)
Q Consensus 83 ~v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~----~~p~~-g~e~~i~L~~~~l~~s~sv~~~~~KK~~Fv 157 (875)
.+.|+|||++++.. .++|++|||||+++.|+||++... ..|.+ ...-.+.|.+|.+..... ....++++|.
T Consensus 11 ~~~k~G~L~K~g~~--~k~Wk~RwfVL~~~~L~yyk~~~~~~~e~~plg~~~~G~I~L~~~~v~~~~~--~~~~k~~~F~ 86 (124)
T 2w2x_D 11 EHKQQGELYMWDSI--DQKWTRHFCAIADAKLSFSDDIEQTMEEDNPLGSLCRGILDLNTYNVVKAPQ--GKNQKSFVFI 86 (124)
T ss_dssp --CCEEEEEEEETT--TTEEEEEEEEEETTEEEEEEEHHHHHHCSSCCCCSCSEEEEGGGEEEEECTT--CBTTBSEEEE
T ss_pred hcceeEEEEEECCC--CCCceEeEEEEECCEEEEEcccccccccccccCCccccEEECCCCEEEEccC--CcCCCCEEEE
Confidence 37899999987643 589999999999999999997431 11221 112346777777654321 1245778999
Q ss_pred EEecCCCCceeEEEecchhhHHHHHHHHHhhhcc
Q 002835 158 LFPDGRDGRAFTLKAESLEDLYDWKTALENALAQ 191 (875)
Q Consensus 158 I~~~~~dgrty~fQAdSEeE~~eWI~AI~~ai~~ 191 (875)
|.....+.++|+|+|+|++++.+||.||+.++..
T Consensus 87 I~~~~~~~~~~~~~A~s~ee~~~Wi~ai~~a~~~ 120 (124)
T 2w2x_D 87 LEPKQQGDPPVEFATDKVEELFEWFQSIREITWK 120 (124)
T ss_dssp EEECC--CCCEEEEECCCHHHHHHHHHHHHHHC-
T ss_pred EECCCCCCceEEEEECCHHHHHHHHHHHHHHHHh
Confidence 8875444578999999999999999999999854
No 50
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.53 E-value=2.5e-14 Score=132.22 Aligned_cols=94 Identities=24% Similarity=0.359 Sum_probs=72.0
Q ss_pred cEEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecC
Q 002835 83 AVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDG 162 (875)
Q Consensus 83 ~v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~ 162 (875)
.++++|||++++.. ..+.|++|||||+++.|+||+++.+..+.+ .+.|..|.. + ....++||.|...
T Consensus 7 ~~~~~G~L~K~~~~-~~~~WkkR~fvL~~~~L~yy~~~~~~~~~g----~i~l~~~~~-----v--~~~~~~~F~i~~~- 73 (115)
T 2cod_A 7 GKVKSGWLDKLSPQ-GKRMFQKRWVKFDGLSISYYNNEKEMYSKG----IIPLSAIST-----V--RVQGDNKFEVVTT- 73 (115)
T ss_dssp CCCEEEEEEECCSS-SSSCCEEEEEEECSSEEEEEESSCCSSCCC----EEETTTEEE-----E--EEETTTEEEEEES-
T ss_pred CccEEEEEEEcCCC-CCCCCceEEEEEECCEEEEEcCCCCcccCC----EEECCcceE-----E--EeCCCCEEEEEeC-
Confidence 37899999976542 358999999999999999999987643322 345555431 1 1123688998854
Q ss_pred CCCceeEEEecchhhHHHHHHHHHhhhcc
Q 002835 163 RDGRAFTLKAESLEDLYDWKTALENALAQ 191 (875)
Q Consensus 163 ~dgrty~fQAdSEeE~~eWI~AI~~ai~~ 191 (875)
+++|+|+|++++|+..||.+|+.++..
T Consensus 74 --~r~~~l~a~s~~e~~~Wi~~l~~~~~~ 100 (115)
T 2cod_A 74 --QRTFVFRVEKEEERNDWISILLNALKS 100 (115)
T ss_dssp --SCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred --CcEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 799999999999999999999999854
No 51
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A
Probab=99.53 E-value=4.6e-14 Score=128.45 Aligned_cols=99 Identities=22% Similarity=0.344 Sum_probs=71.9
Q ss_pred cEEEEeeeEeecCCCCccCceeEEEEEeCC--eEEEecCCCCCCCCCCccceeecCCeeecCCCceee--ecCCcceEEE
Q 002835 83 AVFKSGPLFISSKGIGWTSWKKRWFILTHT--SLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVV--KADKKLLTVL 158 (875)
Q Consensus 83 ~v~KEGyL~k~kKg~~~ksWkKRWfVL~~~--sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~--~~~KK~~FvI 158 (875)
.++++|||++++. ..++|++|||||+++ .|+||++..+..|. -.+.|..|.+........ ...+.++|.|
T Consensus 6 ~~~~~G~L~K~g~--~~~~Wk~R~fvL~~~~~~L~yyk~~~~~~~~----g~i~L~~~~v~~~~~~~~~~~~~~~~~F~i 79 (109)
T 2i5f_A 6 VIIKQGCLLKQGH--RRKNWKVRKFILREDPAYLHYYDPAGAEDPL----GAIHLRGCVVTSVESNSNGRKSEEENLFEI 79 (109)
T ss_dssp CEEEEEEEEEECT--TTCCEEEEEEEEETTTTEEEEECTTSCSSCS----EEEECTTCEEEEECC--------CCSEEEE
T ss_pred ceeEEEEEEEcCC--CCCCceEEEEEEeCCCcEEEEECCCCCCCcc----EEEECCCCEEEEccCCcccccCCCceEEEE
Confidence 4899999998654 358999999999986 99999987654332 235666665432211100 1236788988
Q ss_pred EecCCCCceeEEEecchhhHHHHHHHHHhhh
Q 002835 159 FPDGRDGRAFTLKAESLEDLYDWKTALENAL 189 (875)
Q Consensus 159 ~~~~~dgrty~fQAdSEeE~~eWI~AI~~ai 189 (875)
... ++++|+|+|+|++|+..||.+|+.++
T Consensus 80 ~~~--~~~~~~l~a~s~~e~~~Wi~ai~~~~ 108 (109)
T 2i5f_A 80 ITA--DEVHYFLQAATPKERTEWIKAIQMAS 108 (109)
T ss_dssp ECT--TCCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred EeC--CCCEEEEEcCCHHHHHHHHHHHHHHh
Confidence 864 46789999999999999999999876
No 52
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Probab=99.52 E-value=1.1e-13 Score=130.21 Aligned_cols=102 Identities=22% Similarity=0.334 Sum_probs=75.0
Q ss_pred CcEEEEeeeEeecCCCCccCceeEEEEEeCC--eEEEecCCCCCCCCCCccceeecCCeeecCCCceee--ecCCcceEE
Q 002835 82 NAVFKSGPLFISSKGIGWTSWKKRWFILTHT--SLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVV--KADKKLLTV 157 (875)
Q Consensus 82 ~~v~KEGyL~k~kKg~~~ksWkKRWfVL~~~--sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~--~~~KK~~Fv 157 (875)
..++++|||++++. ..+.|++|||||+++ .|+||++..+..+. -.+.|..|.+........ ...+.+||.
T Consensus 16 ~~~~~~G~L~K~g~--~~~~Wk~R~fvL~~~~~~L~yy~~~~~~~~~----g~i~L~~~~v~~~~~~~~~~~~~~~~~F~ 89 (129)
T 1x05_A 16 GVIIKQGCLLKQGH--RRKNWKVRKFILREDPAYLHYYDPAGAEDPL----GAIHLRGCVVTSVESNSNGRKSEEENLFE 89 (129)
T ss_dssp SEEEEEEEEEECCS--SCCCCEEEEEEEEETTTEEEEECSSCCSSCS----EEEECTTCEEEECCCCCCSSSCSSCSEEE
T ss_pred CCceEEEEEEecCC--CCCCCeeEEEEEeCCCCEEEEECCCCCCcce----eEEEccCCEEEEccCCccccccCCCeEEE
Confidence 35899999988644 458999999999976 89999987654332 236666665543211100 123678999
Q ss_pred EEecCCCCceeEEEecchhhHHHHHHHHHhhhcc
Q 002835 158 LFPDGRDGRAFTLKAESLEDLYDWKTALENALAQ 191 (875)
Q Consensus 158 I~~~~~dgrty~fQAdSEeE~~eWI~AI~~ai~~ 191 (875)
|... ++++|+|+|++++++..||.||+.++..
T Consensus 90 i~~~--~~~~~~l~a~s~~e~~~Wi~al~~~~~~ 121 (129)
T 1x05_A 90 IITA--DEVHYFLQAATPKERTEWIKAIQMASRT 121 (129)
T ss_dssp EECT--TCCCCEEECSSHHHHHHHHHHHHHHHTC
T ss_pred EEcC--CCCEEEEECCCHHHHHHHHHHHHHHHHc
Confidence 8864 4678999999999999999999999853
No 53
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Probab=99.52 E-value=1.5e-14 Score=135.67 Aligned_cols=103 Identities=17% Similarity=0.288 Sum_probs=74.0
Q ss_pred cEEEEeeeEeecCCCCccCceeEEEEEeC-CeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEec
Q 002835 83 AVFKSGPLFISSKGIGWTSWKKRWFILTH-TSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPD 161 (875)
Q Consensus 83 ~v~KEGyL~k~kKg~~~ksWkKRWfVL~~-~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~ 161 (875)
.++++|||++++. ..++|++|||||++ +.|+||++..+..+. -.+.|..+.+...........+.+||.|...
T Consensus 7 ~~~~~G~L~K~g~--~~k~WkkRwfvL~~~~~L~yy~~~~~~~~~----g~i~L~~~~~~~~~~~~~~~~~~~~F~I~~~ 80 (125)
T 1unq_A 7 AIVKEGWLHKRGE--YIKTWRPRYFLLKNDGTFIGYKERPQDVDQ----REAPLNNFSVAQCQLMKTERPRPNTFIIRCL 80 (125)
T ss_dssp CEEEEEEEEEECS--SSCCEEEEEEEEETTSEEEEESSCCCSHHH----HTSCSEEEECTTCEEEEECSSSTTEEEEEEE
T ss_pred CeeEEeeEEeccC--CccCccCcEEEEecCCEEEEEeCCCCCCCC----ceeEccceeEEeeeecccccCCCCEEEEEec
Confidence 4899999987654 46899999999995 699999987654221 1234455544332111123467889998742
Q ss_pred C-CCCceeEEEecchhhHHHHHHHHHhhhcc
Q 002835 162 G-RDGRAFTLKAESLEDLYDWKTALENALAQ 191 (875)
Q Consensus 162 ~-~dgrty~fQAdSEeE~~eWI~AI~~ai~~ 191 (875)
. ..+++|+|+|++++|+..||.||+.++..
T Consensus 81 ~~~~~~~~~~~a~s~~e~~~Wi~al~~~~~~ 111 (125)
T 1unq_A 81 QWTTVIERTFHVETPEEREEWTTAIQTVADG 111 (125)
T ss_dssp ETTEEEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCceeEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 1 33689999999999999999999999853
No 54
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1
Probab=99.52 E-value=2e-14 Score=133.96 Aligned_cols=100 Identities=22% Similarity=0.361 Sum_probs=73.4
Q ss_pred cEEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecC
Q 002835 83 AVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDG 162 (875)
Q Consensus 83 ~v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~ 162 (875)
.++++|||++++. ..+.|++|||||+++.|+||++..+..+. -.+.|..|.............+.+||.|...
T Consensus 13 ~~~~~G~L~K~g~--~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~----g~i~l~~~~~v~~~~~~~~~~~~~~F~i~~~- 85 (125)
T 1eaz_A 13 AVIKAGYCVKQGA--VMKNWKRRYFQLDENTIGYFKSELEKEPL----RVIPLKEVHKVQECKQSDIMMRDNLFEIVTT- 85 (125)
T ss_dssp CCSEEEEEEEECT--TTCCEEEEEEEECSSEEEEESSTTCSSCS----EEEEGGGCCEEEECTTHHHHTCSSEEEEECS-
T ss_pred CccEEEEEEEeCC--CCCCcceEEEEEeCCEEEEEcCCCCCcce----eEEEcccceEEeeccccccCCcCCEEEEEeC-
Confidence 3789999998744 45899999999999999999988764332 2344444421110000012356889999864
Q ss_pred CCCceeEEEecchhhHHHHHHHHHhhhcc
Q 002835 163 RDGRAFTLKAESLEDLYDWKTALENALAQ 191 (875)
Q Consensus 163 ~dgrty~fQAdSEeE~~eWI~AI~~ai~~ 191 (875)
+++|+|+|++++|+..||.+|+.++..
T Consensus 86 --~r~~~l~a~s~~e~~~W~~al~~~i~~ 112 (125)
T 1eaz_A 86 --SRTFYVQADSPEEMHSWIKAVSGAIVA 112 (125)
T ss_dssp --SCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred --CcEEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 789999999999999999999999864
No 55
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Probab=99.52 E-value=3.5e-14 Score=133.11 Aligned_cols=97 Identities=25% Similarity=0.267 Sum_probs=74.3
Q ss_pred cEEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecC
Q 002835 83 AVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDG 162 (875)
Q Consensus 83 ~v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~ 162 (875)
.++++|||++++. ..+.|++|||||+++.|+||++..+..+. -.+.|..|..... .....+++||.|...
T Consensus 17 ~~~~~G~L~K~g~--~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~----g~i~L~~~~~v~~---~~~~~~~~~F~i~~~- 86 (126)
T 1fao_A 17 LGTKEGYLTKQGG--LVKTWKTRWFTLHRNELKYFKDQMSPEPI----RILDLTECSAVQF---DYSQERVNCFCLVFP- 86 (126)
T ss_dssp TTCEEEEEEEECS--SSCCEEEEEEEEETTEEEEESSTTCSSCS----EEEEGGGCCEEEE---ECSSSSSSEEEEEET-
T ss_pred CccEEEEEEEcCC--CCCCcccEEEEEECCEEEEeCCCCCCCce----eEEEccceEEEEe---cccCCCCCEEEEEeC-
Confidence 3789999998764 45899999999999999999988754332 2355555542111 112457789999865
Q ss_pred CCCceeEEEecchhhHHHHHHHHHhhhcc
Q 002835 163 RDGRAFTLKAESLEDLYDWKTALENALAQ 191 (875)
Q Consensus 163 ~dgrty~fQAdSEeE~~eWI~AI~~ai~~ 191 (875)
+++|+|+|++++++..|+.+|+.++..
T Consensus 87 --~r~~~l~a~s~~e~~~Wi~al~~~i~~ 113 (126)
T 1fao_A 87 --FRTFYLCAKTGVEADEWIKILRWKLSQ 113 (126)
T ss_dssp --TEEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred --CcEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999954
No 56
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Probab=99.52 E-value=4.5e-14 Score=133.75 Aligned_cols=100 Identities=24% Similarity=0.287 Sum_probs=75.2
Q ss_pred EEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecC--------Ccce
Q 002835 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKAD--------KKLL 155 (875)
Q Consensus 84 v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~--------KK~~ 155 (875)
++++|||++++.. .++|++|||||+++.|+|||++.... -..+...+.|.+|.+.... .... +.++
T Consensus 6 ~~k~G~L~Kk~~~--~k~W~~rwfVL~~~~L~yyK~~~~~~-d~~P~gsI~L~~c~v~~~~---~~~~~~~~~~~~~~~~ 79 (120)
T 4a6h_A 6 EIKSGFLERRSKF--LKSYSKGYYVLTPNFLHEFKTADRKK-DLVPVMSLALSECTVTEHS---RKNSTSSPNSTGSDAK 79 (120)
T ss_dssp CSEEEEEEEEETT--TTEEEEEEEEECSSEEEEESSCCTTT-CCSCSEEEEGGGEEEEEEC---CCCC---------CCE
T ss_pred ccEEEEEEEcCCC--CCCCccEEEEEeCCEEEEEcCCCcCc-CCCceEEEECCCCEEEEcc---cccccccccccCCCcE
Confidence 6899999987763 58999999999999999999875321 1123456788888876521 1111 6678
Q ss_pred EEEEecCCC----CceeEEEecchhhHHHHHHHHHhhh
Q 002835 156 TVLFPDGRD----GRAFTLKAESLEDLYDWKTALENAL 189 (875)
Q Consensus 156 FvI~~~~~d----grty~fQAdSEeE~~eWI~AI~~ai 189 (875)
|.|...... +++|+|+|+|.+||++||.+|+.++
T Consensus 80 F~i~~~~~~~~~~~~~y~f~A~s~~e~~~Wv~aI~~~~ 117 (120)
T 4a6h_A 80 FVLHAKQNGIIRRGHNWVFKADSYESMMSWFDNLKILT 117 (120)
T ss_dssp EEEEESSSSSSCTTCEEEEECSSHHHHHHHHHHHHHHC
T ss_pred EEEEeCCCCcccCceEEEEEcCCHHHHHHHHHHHHHHh
Confidence 888875421 4699999999999999999999886
No 57
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A
Probab=99.52 E-value=7.4e-14 Score=126.37 Aligned_cols=95 Identities=21% Similarity=0.381 Sum_probs=70.1
Q ss_pred EEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecCCCC
Q 002835 86 KSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDG 165 (875)
Q Consensus 86 KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~~dg 165 (875)
++|||++++.. .++|++|||||.++.|+||++..+... .+.-.+.|..|.+... ..+.++|.|... ++
T Consensus 1 ~eG~L~K~g~~--~k~Wk~R~fvL~~~~L~Yy~~~~~~~~--~~~g~i~L~~~~v~~~------~~~~~~F~i~~~--~~ 68 (103)
T 3rcp_A 1 MEGVLYKWTNY--LTGWQPRWFVLDNGILSYYDSQDDVCK--GSKGSIKMAVCEIKVH------SADNTRMELIIP--GE 68 (103)
T ss_dssp CEEEEEEECCT--TTCEEEEEEEEETTEEEEESSCC---C--CCSCEEEGGGCEEECC------TTCSSEEEEEET--TT
T ss_pred CceEEEEccCC--CCCeeceEEEEECCEEEEEecCCcccC--CcccEEEeeeeEEEEc------CCCCceEEEEeC--CC
Confidence 58999887644 589999999999999999999875311 1112345555555432 235778888753 46
Q ss_pred ceeEEEecchhhHHHHHHHHHhhhccC
Q 002835 166 RAFTLKAESLEDLYDWKTALENALAQA 192 (875)
Q Consensus 166 rty~fQAdSEeE~~eWI~AI~~ai~~a 192 (875)
++|+|+|+|++|+..||.+|+.++...
T Consensus 69 r~~~l~a~s~~e~~~Wi~al~~a~~~~ 95 (103)
T 3rcp_A 69 QHFYMKAVNAAERQRWLVALGSSKASL 95 (103)
T ss_dssp EEEEEECSSHHHHHHHHHHHHTTSCCC
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 899999999999999999999998543
No 58
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=5.5e-14 Score=129.16 Aligned_cols=96 Identities=19% Similarity=0.356 Sum_probs=71.4
Q ss_pred cEEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCe-eecCCCceeeecCCcceEEEEec
Q 002835 83 AVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGI-DLNNSGSVVVKADKKLLTVLFPD 161 (875)
Q Consensus 83 ~v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~-~l~~s~sv~~~~~KK~~FvI~~~ 161 (875)
.++++|||++++. ..+.|++|||||+++.|+||++..+..+ .-.+.|..+ .+... .....++++|.|...
T Consensus 7 ~~~~~G~L~K~~~--~~~~Wk~R~fvL~~~~L~yy~~~~~~~~----~g~i~L~~~~~v~~~---~~~~~~~~~F~i~~~ 77 (115)
T 2dn6_A 7 GVLKQGYMMKKGH--RRKNWTERWFVLKPNIISYYVSEDLKDK----KGDILLDENCCVESL---PDKDGKKCLFLVKCF 77 (115)
T ss_dssp SCSEEEEEEEECT--TSSCEEEEEEEECSSCEEEESSTTCSSE----EEEECCCTTCEEEEE---CCCTTCCSEEEEECS
T ss_pred CceEEEEEEecCC--CCCCcEEeEEEEECCEEEEeCCCCCccc----CcEEEecCcEEEEEC---CCCCCCeeEEEEEeC
Confidence 4789999998665 3589999999999999999998765422 122334432 12110 112356789998765
Q ss_pred CCCCceeEEEecchhhHHHHHHHHHhhhc
Q 002835 162 GRDGRAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 162 ~~dgrty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
+++|+|+|++++|+..||.+|+.++.
T Consensus 78 ---~r~~~l~a~s~~e~~~Wi~ai~~~~~ 103 (115)
T 2dn6_A 78 ---DKTFEISASDKKKKQEWIQAIHSTIH 103 (115)
T ss_dssp ---SCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred ---CCEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999885
No 59
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.50 E-value=5.9e-14 Score=135.83 Aligned_cols=98 Identities=23% Similarity=0.346 Sum_probs=75.5
Q ss_pred cEEEEeeeEeecCC----CCccCceeEEEEEeCC-----eEEEecCCC-CCCCCCCccceeecCCeeecCCCceeeecCC
Q 002835 83 AVFKSGPLFISSKG----IGWTSWKKRWFILTHT-----SLVFFRSDP-SAIPQKGSEVNLTLGGIDLNNSGSVVVKADK 152 (875)
Q Consensus 83 ~v~KEGyL~k~kKg----~~~ksWkKRWfVL~~~-----sL~yYKd~k-~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~K 152 (875)
.++++|||+++..+ ...+.|++|||||++. .|.||++.. ...+ . -.+.|..|.+... ....+
T Consensus 17 ~~~~~G~L~K~~~~~~~~~~~k~Wk~RwfvL~~~~~g~~~L~yy~~~~~~~~~-~---g~I~L~~~~~~~~----~~~~~ 88 (150)
T 1wg7_A 17 GITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEP-K---GSIFLDSCMGVVQ----NNKVR 88 (150)
T ss_dssp CCCCEEEEEECCCCSSHHHHHSSCEEEEEEEEECSSSCEEEEEESSSCCSSCC-S---EEECTTTCCEECC----CCSSC
T ss_pred CeeEEEEEEEecCCccccccccCeeEEEEEEecCCCCceEEEEECCCCCCCCc-C---cEEecccCEEEec----CCCCC
Confidence 37899999987643 2458999999999997 999999887 3322 2 2355666655432 12467
Q ss_pred cceEEEEecCCCCceeEEEecchhhHHHHHHHHHhhhc
Q 002835 153 KLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 153 K~~FvI~~~~~dgrty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
++||.|... ++++|+|+|++++|+..||.+|+.++.
T Consensus 89 ~~~F~i~~~--~~r~~~l~A~s~~e~~~Wi~al~~ai~ 124 (150)
T 1wg7_A 89 RFAFELKMQ--DKSSYLLAADSEVEMEEWITILNKILQ 124 (150)
T ss_dssp TTEEEEECS--SSCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEeC--CCcEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 889998864 358999999999999999999999985
No 60
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*
Probab=99.50 E-value=3.5e-14 Score=141.87 Aligned_cols=103 Identities=15% Similarity=0.137 Sum_probs=71.1
Q ss_pred EEEEeeeEeecCCC---CccCceeEEEEEeCCeEEEecCC----CCCCCCCCccceeecCCeeec-CCCc-eeeecCCc-
Q 002835 84 VFKSGPLFISSKGI---GWTSWKKRWFILTHTSLVFFRSD----PSAIPQKGSEVNLTLGGIDLN-NSGS-VVVKADKK- 153 (875)
Q Consensus 84 v~KEGyL~k~kKg~---~~ksWkKRWfVL~~~sL~yYKd~----k~~~p~~g~e~~i~L~~~~l~-~s~s-v~~~~~KK- 153 (875)
|+|+|||+|+..+. .+++|++|||||+++.|.||++. .+..+ .-.|.|..+... .... -.....++
T Consensus 3 vikeG~L~Kr~~~~~~~~~k~WKkRwFVL~~~~L~Yyk~~~~~~~~~~~----~G~I~L~~~~~ve~~~~~~~~~~~~~~ 78 (169)
T 1btk_A 3 VILESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERGRRGSK----KGSIDVEKITCVETVVPEKNPPPERQI 78 (169)
T ss_dssp CCEEEEEEEECCCSSTTCCCCEEEEEEEECSSEEEEEEEETTTTEEEEE----EEEEEGGGEEEEEECCCCSSCCGGGCC
T ss_pred eEEEEEEEEecCCCCCcccCCCceEEEEEcCCEEEEEecCCccCCCCce----eeEEECcceEEEEeccCCCCcchhccc
Confidence 78999999976542 45899999999999999999983 22211 123455544321 1100 00001122
Q ss_pred --------------------ceEEEEecCCCCceeEEEecchhhHHHHHHHHHhhhccCC
Q 002835 154 --------------------LLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAP 193 (875)
Q Consensus 154 --------------------~~FvI~~~~~dgrty~fQAdSEeE~~eWI~AI~~ai~~aP 193 (875)
++|.|+.. .++|+|+|+|++|+++||.+|+.++...|
T Consensus 79 ~~~~~~~~~~~~~~i~~~~~~~F~I~t~---~rt~yl~A~s~~E~~eWi~aI~~~i~~n~ 135 (169)
T 1btk_A 79 PRRGEESSEMEQISIIERFPYPFQVVYD---EGPLYVFSPTEELRKRWIHQLKNVIRYNS 135 (169)
T ss_dssp ---------CCTTHHHHCCCEEEEEEET---TCCEEEEESCHHHHHHHHHHHHHHHTTCS
T ss_pred ccccCcccccccccccccccccEEEEeC---CceEEEEcCCHHHHHHHHHHHHHHHHHCc
Confidence 78888765 58999999999999999999999996544
No 61
>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}
Probab=99.50 E-value=1.7e-14 Score=136.44 Aligned_cols=107 Identities=18% Similarity=0.256 Sum_probs=73.3
Q ss_pred cEEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCcee-eecCCcceEEEEec
Q 002835 83 AVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVV-VKADKKLLTVLFPD 161 (875)
Q Consensus 83 ~v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~-~~~~KK~~FvI~~~ 161 (875)
.+.++|||+++..+...+.|++|||||+++.|+||++..+.. ...+.-.+.|..|.+....... ....+++||.|...
T Consensus 4 ~v~~~G~L~K~~~~~~~~~WkrRwfvL~~~~L~yyk~~~d~~-~~~p~g~I~L~~~~~~~v~~~~~~~~~~~~~F~i~~~ 82 (134)
T 2y7b_A 4 SVEERGFLTIFEDVSGFGAWHRRWCVLSGNCISYWTYPDDEK-RKNPIGRINLANCTSRQIEPANREFCARRNTFELITV 82 (134)
T ss_dssp CCCEEEEEEEEEEETTEEEEEEEEEEEETTEEEEESSHHHHT-TSCCSEEEEGGGBCSSSCEECCTTTCCCTTEEEEEEE
T ss_pred CceEEeeEEEEcCCCCCCCcEEEEEEEECCEEEEECCCCccc-ccCceEEEEhhhCccccccccchhhccCCCEEEEEec
Confidence 478999999985445568999999999999999999543210 0111234666666532211100 01257889998752
Q ss_pred --CCC---------------CceeEEEecchhhHHHHHHHHHhhhc
Q 002835 162 --GRD---------------GRAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 162 --~~d---------------grty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
.+. .++|+|+|+|++|+..||.||+.++.
T Consensus 83 ~p~~~~~~~~~~~~~~~~~~~r~~~l~A~s~~e~~~Wi~al~~~i~ 128 (134)
T 2y7b_A 83 RPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQKLNQVLV 128 (134)
T ss_dssp EECCTTCCCCSSEEEETTEEEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCcccccccccccccCCCceEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 111 15799999999999999999999884
No 62
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.49 E-value=2.4e-13 Score=127.71 Aligned_cols=100 Identities=19% Similarity=0.298 Sum_probs=71.2
Q ss_pred cEEEEeeeEeecCCCCccCceeEEEEEe--CCeEEEecCC-CCCCCCCCccceeecCCeeecCCCce--eeecC---Ccc
Q 002835 83 AVFKSGPLFISSKGIGWTSWKKRWFILT--HTSLVFFRSD-PSAIPQKGSEVNLTLGGIDLNNSGSV--VVKAD---KKL 154 (875)
Q Consensus 83 ~v~KEGyL~k~kKg~~~ksWkKRWfVL~--~~sL~yYKd~-k~~~p~~g~e~~i~L~~~~l~~s~sv--~~~~~---KK~ 154 (875)
.++++|||++++.. .+.|++|||||+ +..|+||+++ ....+ . -.+.|..|.+...... ..... +.+
T Consensus 17 ~~~~~G~L~K~g~~--~~~Wk~R~fvL~~d~~~L~yy~~~~~~~~~-~---g~i~L~~~~v~~~~~~~~p~~~~~~~~~~ 90 (129)
T 1x1g_A 17 TVVKQGYLAKQGHK--RKNWKVRRFVLRKDPAFLHYYDPSKEENRP-V---GGFSLRGSLVSALEDNGVPTGVKGNVQGN 90 (129)
T ss_dssp EEEEEEEEEEECSS--SSSEEEEEEEEEESSCEEEEECSSSCCSSC-S---CCEESTTCCCEECCSSSSCSSCSSCCCSS
T ss_pred CEEEEEEEEEECCC--CCCeeeEEEEEeCCCCeEEEeCCCCcCCcc-c---eEEECcCCEEEEeCCCCCcccccCCCCCc
Confidence 48999999987544 689999999999 4699999986 33322 2 2355555544322110 00001 568
Q ss_pred eEEEEecCCCCceeEEEecchhhHHHHHHHHHhhhc
Q 002835 155 LTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 155 ~FvI~~~~~dgrty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
||.|... ++++|+|+|++++|+..||.+|+.++.
T Consensus 91 ~F~I~~~--~~r~~~l~a~s~~e~~~Wi~al~~~~~ 124 (129)
T 1x1g_A 91 LFKVITK--DDTHYYIQASSKAERAEWIEAIKKLTS 124 (129)
T ss_dssp CEEECCT--TCCCEEECCSSHHHHHHHHHHHHHHSS
T ss_pred eEEEEcC--CCCEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 8888754 467899999999999999999999985
No 63
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}
Probab=99.49 E-value=9.6e-14 Score=131.43 Aligned_cols=106 Identities=20% Similarity=0.284 Sum_probs=67.2
Q ss_pred cEEEEeeeEeecCCCCccCceeEEEEEeC-CeEEEecCCCCCC-CCCCccc------------eeecCCeeecCCC--ce
Q 002835 83 AVFKSGPLFISSKGIGWTSWKKRWFILTH-TSLVFFRSDPSAI-PQKGSEV------------NLTLGGIDLNNSG--SV 146 (875)
Q Consensus 83 ~v~KEGyL~k~kKg~~~ksWkKRWfVL~~-~sL~yYKd~k~~~-p~~g~e~------------~i~L~~~~l~~s~--sv 146 (875)
.++++|||+++..+...++|++|||||++ +.|+||++..+.. ...+.++ .+.|..|.+.... ..
T Consensus 3 ~~~k~G~L~K~~g~~~~k~WkkRwFvL~~~~~l~Y~~~~~d~~~~~~~~~i~l~~~~~~~~~~~i~l~~~~~~~~~~~~~ 82 (128)
T 2rlo_A 3 IPIKQSFLLKRSGNSLNKEWKKKYVTLSSNGFLLYHPSINDYIHSTHGKEMDLLRTTVKVPGKRPPRAISAFGPSASGSA 82 (128)
T ss_dssp CEEEEEEEEEECSCSTTCCEEEEEEEEETTTEEEEESSHHHHHHTCSCEEEESSSCEEECSSCCCCCSSCCCSCCSCCCC
T ss_pred cceeEEEEEEecCCCccCCccEEEEEEeCCCEEEEecchhhhccccCCCeeeeeeeEEecCCCccccccccccccccccc
Confidence 37899999998432346899999999996 6788887522100 0001111 1112222221100 00
Q ss_pred eeecCCcceEEEEecCCCCceeEEEecchhhHHHHHHHHHhhhc
Q 002835 147 VVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 147 ~~~~~KK~~FvI~~~~~dgrty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
.....+++||.|... ++++|+|+|+|++|+.+||.||+.++.
T Consensus 83 ~~~~~~~~~F~I~t~--~~r~~~l~A~s~~e~~~Wi~ai~~~i~ 124 (128)
T 2rlo_A 83 GQAEEENFEFLIVSS--TGQTWHFEAASFEERDAWVQAIESQIL 124 (128)
T ss_dssp SSCCCCCCCEEEECT--TSCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred cccccCCceEEEEcC--CCCEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 001257889998754 469999999999999999999999884
No 64
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A
Probab=99.47 E-value=9.5e-14 Score=143.51 Aligned_cols=102 Identities=24% Similarity=0.365 Sum_probs=76.3
Q ss_pred cEEEEeeeEeecCCC--CccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEe
Q 002835 83 AVFKSGPLFISSKGI--GWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFP 160 (875)
Q Consensus 83 ~v~KEGyL~k~kKg~--~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~ 160 (875)
.++++|||++++.+. .++.|++|||||+++.|+||++.....+. -.+.|..|.+...........+.+||.|..
T Consensus 105 ~v~k~G~L~Kkg~~~~~~~k~WkkRwfVL~~~~L~Yyk~~~~~~p~----g~I~L~~~~~v~~~~~~~~~~k~~~F~I~t 180 (211)
T 1u5e_A 105 FVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQK----GEFAIDGYDVRMNNTLRKDGKKDCCFEICA 180 (211)
T ss_dssp SEEEEEEEEEEEHHHHTTTCCCEEEEEEEETTEEEEESSTTCSSCS----EEEECTTCEEEECGGGCSSTTGGGEEEEEC
T ss_pred CccEEEEEEEECCCCCcCCCCcEeEEEEEECCEEEEEcCCCCccce----EEEEeCCcEEEEcCCccccCCCCCEEEEEc
Confidence 489999999987642 36899999999999999999998764332 235555555432211001224568999886
Q ss_pred cCCCCceeEEEecchhhHHHHHHHHHhhhc
Q 002835 161 DGRDGRAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 161 ~~~dgrty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
. ++++|+|+|++++++..||.+|+.++.
T Consensus 181 ~--~~r~~~l~A~s~~e~~~Wi~aL~~ai~ 208 (211)
T 1u5e_A 181 P--DKRIYQFTAASPKDAEEWVQQLKFILQ 208 (211)
T ss_dssp S--SSCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred C--CCCEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 4 469999999999999999999999984
No 65
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A
Probab=99.47 E-value=7.7e-14 Score=128.12 Aligned_cols=100 Identities=25% Similarity=0.453 Sum_probs=68.5
Q ss_pred EEEEeeeEeecCCCCccCceeEEEEE-eCCeEEEecCCCCCCCCCCccceeecCCeeecCCCcee---eec--CCcceEE
Q 002835 84 VFKSGPLFISSKGIGWTSWKKRWFIL-THTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVV---VKA--DKKLLTV 157 (875)
Q Consensus 84 v~KEGyL~k~kKg~~~ksWkKRWfVL-~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~---~~~--~KK~~Fv 157 (875)
+.++|||++++. ..+.|++||||| .++.|+||+++.+..+.+ .+.+....+.+.....+. ... .+.++|.
T Consensus 5 ~~~~G~L~K~g~--~~k~WkkR~fvL~~~~~L~yyk~~~~~~~~g--~i~l~~~~i~l~~~~~v~~v~~~~~~~~~~~F~ 80 (112)
T 3aj4_A 5 FVKSGWLLRQST--ILKRWKKNWFDLWSDGHLIYYDDQTRQNIED--KVHMPMDCINIRTGQECRDTQPPDGKSKDCMLQ 80 (112)
T ss_dssp CSEEEEEEEECS--SSCCEEEEEEEECTTSEEEEESSTTCCSEEE--EEEHHHHEEEEEEGGGCCSCCCSTTCCGGGEEE
T ss_pred eeEEEEEEeeCC--CCCCeeceEEEEeeCCEEEEEcCCCCCCCCc--cccccccceeecccccccccCCCCCCCcCcEEE
Confidence 789999998754 458999999999 888999999887543211 111111122222111110 111 2357899
Q ss_pred EEecCCCCceeEEEecchhhHHHHHHHHHhhh
Q 002835 158 LFPDGRDGRAFTLKAESLEDLYDWKTALENAL 189 (875)
Q Consensus 158 I~~~~~dgrty~fQAdSEeE~~eWI~AI~~ai 189 (875)
|... ++++|+|+|+|++|+..||.||+.+.
T Consensus 81 i~~~--~~r~~~l~a~s~~e~~~Wi~al~~a~ 110 (112)
T 3aj4_A 81 IVCR--DGKTISLCAESTDDCLAWKFTLQDSR 110 (112)
T ss_dssp EEET--TSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred EEec--CCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 8742 47999999999999999999999886
No 66
>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1e-13 Score=129.46 Aligned_cols=95 Identities=19% Similarity=0.301 Sum_probs=71.8
Q ss_pred EEEEeeeEeecCCCCccCceeEEEEEe--CCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEec
Q 002835 84 VFKSGPLFISSKGIGWTSWKKRWFILT--HTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPD 161 (875)
Q Consensus 84 v~KEGyL~k~kKg~~~ksWkKRWfVL~--~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~ 161 (875)
+.++|||+++.. ..+.|++|||||+ ++.|+||++..+... .+.-.+.|..|.+.. ...++++|.|...
T Consensus 8 ~~~~G~L~K~~~--~~~~Wk~R~fvL~~~~~~L~Yyk~~~~~~~--~~~g~I~L~~~~v~~------~~~~~~~F~i~~~ 77 (120)
T 2d9x_A 8 ENVYGYLMKYTN--LVTGWQYRFFVLNNEAGLLEYFVNEQSRNQ--KPRGTLQLAGAVISP------SDEDSHTFTVNAA 77 (120)
T ss_dssp CCCEEEEEEEEE--TTTEEEEEEEEECTTTCEEEEESSGGGSSS--CCSEEEECTTCCEEC------CSSSSSCEEECCS
T ss_pred CcEEEEEEecCC--CCCCceEEEEEEECCCCEEEEEecCcccCC--CccceEEcceEEEEe------cCCCCCEEEEEcC
Confidence 679999998775 3589999999999 479999998765311 111235566665433 2346688988753
Q ss_pred CCCCceeEEEecchhhHHHHHHHHHhhhc
Q 002835 162 GRDGRAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 162 ~~dgrty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
++++|+|+|++++|+..||.+|+.++.
T Consensus 78 --~~r~~~l~a~s~~e~~~Wi~al~~~~~ 104 (120)
T 2d9x_A 78 --SGEQYKLRATDAKERQHWVSRLQICTQ 104 (120)
T ss_dssp --SSCCEEECCSSHHHHHHHHHHHHHHHH
T ss_pred --CCCEEEEECCCHHHHHHHHHHHHHHHH
Confidence 469999999999999999999999885
No 67
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A
Probab=99.44 E-value=2.3e-13 Score=145.21 Aligned_cols=105 Identities=23% Similarity=0.328 Sum_probs=74.7
Q ss_pred cEEEEeeeEee------cCCCC----ccCceeEEEEEeCCeEEEecCCCCCCC--CCCccceeecCCeeecCCCceeeec
Q 002835 83 AVFKSGPLFIS------SKGIG----WTSWKKRWFILTHTSLVFFRSDPSAIP--QKGSEVNLTLGGIDLNNSGSVVVKA 150 (875)
Q Consensus 83 ~v~KEGyL~k~------kKg~~----~ksWkKRWfVL~~~sL~yYKd~k~~~p--~~g~e~~i~L~~~~l~~s~sv~~~~ 150 (875)
.+.|+|||++. +.|.. +++|++|||||+++.|+|||+.+.... ...+...+.|.+|.+... .+..
T Consensus 10 ~v~K~G~L~~k~~~~~~K~g~~~~~~~K~WkrRWfVL~~~~L~yyK~~~~~~~~~~~~p~g~I~L~~~~v~~~---~~~~ 86 (263)
T 3a8p_A 10 VVRKAGWLFFKPLVTLQKERKLELVARRKWKQYWVTLKGCTLLFYETYGKNSTEQNSAPRCALFAEDSIVQSV---PEHP 86 (263)
T ss_dssp CEEEEEEEEEEEEEEEEGGGEEEECTTCCCEEEEEEEETTEEEEESSCCC------CCCSEEEECTTCEEEEC---TTCS
T ss_pred CeEEEEEeeecccccccCCCCccCccCCCceEEEEEEcCCEEEEEecCcccccccccCccceEEcCCcEEEEC---CcCC
Confidence 48999999932 33333 689999999999999999998642110 011223355656554422 1223
Q ss_pred CCcceEEEEecCCCCceeEEEecchhhHHHHHHHHHhhhccC
Q 002835 151 DKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQA 192 (875)
Q Consensus 151 ~KK~~FvI~~~~~dgrty~fQAdSEeE~~eWI~AI~~ai~~a 192 (875)
.+++||.|... ++++|+|+|+|++||++||.||+.++...
T Consensus 87 kk~~~F~I~t~--~~r~y~f~A~s~ee~~~Wi~aI~~a~~~~ 126 (263)
T 3a8p_A 87 KKEHVFCLSNS--CGDVYLFQATSQTDLENWVTAIHSACASL 126 (263)
T ss_dssp SCSSEEEEECT--TSCEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEcC--CCcEEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 57899998753 58999999999999999999999998643
No 68
>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus}
Probab=99.41 E-value=1.6e-12 Score=124.20 Aligned_cols=102 Identities=15% Similarity=0.294 Sum_probs=75.7
Q ss_pred EEEeeeEee-----cCCCCccCceeEEEEEeCCeEEEecCCCCCCC-----CCCccceeecCCeeecCCCceeeecCCcc
Q 002835 85 FKSGPLFIS-----SKGIGWTSWKKRWFILTHTSLVFFRSDPSAIP-----QKGSEVNLTLGGIDLNNSGSVVVKADKKL 154 (875)
Q Consensus 85 ~KEGyL~k~-----kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p-----~~g~e~~i~L~~~~l~~s~sv~~~~~KK~ 154 (875)
+++|||.+. +++..+++|++|||||+++.|+||+....... ...+.-.+.|.++.+... +...+++
T Consensus 2 ~~~G~L~rk~llK~G~k~~~ksWkr~W~vL~g~~L~yf~~~~~~~~~~~~~~~~P~~~i~L~g~~V~~~----e~~~~~~ 77 (126)
T 2dtc_A 2 TMEGPLRRKTLLKEGRKPALSSWTRYWVVLSGATLLYYGAKSLRGTDRKHYKSTPGKKVSIVGWMVQLP----DDPEHPD 77 (126)
T ss_dssp CEEEEEEEEEEEBTTBCCSSCCCEEEEEEEETTEEEEEEBSSSCCSSGGGBCSSCSEEEECTTCEEECC----CCTTSTT
T ss_pred ceeeeeeeeehhhcCCcccccCcccEEEEEeCCEEEEEcccccccccccccccCCCceEEeCCCEEEec----CCCCCCC
Confidence 478988864 34435799999999999999999996531100 012334577777777632 3445788
Q ss_pred eEEEEecCCCCceeEEEecchhhHHHHHHHHHhhhcc
Q 002835 155 LTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQ 191 (875)
Q Consensus 155 ~FvI~~~~~dgrty~fQAdSEeE~~eWI~AI~~ai~~ 191 (875)
||.|... ..|.+|.|+|++++++..|+.||..++..
T Consensus 78 ~F~L~~~-~~G~~Y~fqA~s~~~~~~W~~ai~~a~~~ 113 (126)
T 2dtc_A 78 IFQLNNP-DKGNVYKFQTGSRFHAILWHKHLDDACKS 113 (126)
T ss_dssp EEEEECT-TSCSEEEEECSSHHHHHHHHHHHHHHHTS
T ss_pred EEEEeeC-CCCCEEEEeCCCHHHHHHHHHHHHHHHhc
Confidence 9999842 35899999999999999999999999963
No 69
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Probab=99.39 E-value=6e-13 Score=138.82 Aligned_cols=97 Identities=26% Similarity=0.453 Sum_probs=74.9
Q ss_pred cEEEEeeeEeecCCC---CccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEE
Q 002835 83 AVFKSGPLFISSKGI---GWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLF 159 (875)
Q Consensus 83 ~v~KEGyL~k~kKg~---~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~ 159 (875)
.++++|||++++.+. ..+.|++|||||+++.|+||+++.+..+ .-.+.|..|.+ +.....+++||.|.
T Consensus 57 ~~~k~G~L~K~g~~~~~~~~k~WkkRwfvL~~~~L~Yyk~~~~~~~----~g~I~L~~~~~-----v~~~~~k~~~F~I~ 127 (228)
T 3tfm_A 57 EALKQGWLHNNGGGSSTLSRRNWKKRWFVLRQSKLMYFENDSEEKL----KGTVEVRSAKE-----IIDNTNKENGIDII 127 (228)
T ss_dssp CSSEEEEEEECGGGCSSSCGGGCEEEEEEECSSEEEEESSTTCCSE----EEEEEGGGCSE-----EEEETTTTSEEEEE
T ss_pred CcceEEEEEEECCCcCCcccCCceEEEEEEeCCEEEEEeCCCCcce----eEEEEcCCCEE-----eccCCCCCcEEEEE
Confidence 378999999876532 3589999999999999999998876422 12244444432 33345678999997
Q ss_pred ecCCCCceeEEEecchhhHHHHHHHHHhhhcc
Q 002835 160 PDGRDGRAFTLKAESLEDLYDWKTALENALAQ 191 (875)
Q Consensus 160 ~~~~dgrty~fQAdSEeE~~eWI~AI~~ai~~ 191 (875)
.. +++|+|+|+|++|+..||.+|+.++..
T Consensus 128 t~---~r~~~l~A~s~~e~~~Wv~aL~~~i~~ 156 (228)
T 3tfm_A 128 MA---DRTFHLIAESPEDASQWFSVLSQVHSS 156 (228)
T ss_dssp CS---SCEEEEECSSHHHHHHHHHHHHHHHTC
T ss_pred cC---CcEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 64 799999999999999999999999963
No 70
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=99.33 E-value=2.3e-12 Score=137.40 Aligned_cols=104 Identities=16% Similarity=0.245 Sum_probs=73.4
Q ss_pred EEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCce--eeecCCcceEEEEec
Q 002835 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSV--VVKADKKLLTVLFPD 161 (875)
Q Consensus 84 v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv--~~~~~KK~~FvI~~~ 161 (875)
..++||||+++.+ .++|++|||||+++.|+||++..+..+.+ ......+..|.+...... .....+++||.|.+.
T Consensus 168 p~~~G~L~k~~~~--~k~WkkR~fvL~~~~L~yyk~~~~~~~~~-~i~l~~l~~~~v~~~~~~~~~~~~~~~~~F~i~~~ 244 (291)
T 3tca_A 168 PELEGALYLKEDG--KKSWKRRYFLLRASGIYYVPKGKTKTSRD-LACFIQFENVNIYYGIQCKMKYKAPTDHCFVLKHP 244 (291)
T ss_dssp CCCEEEEEEECTT--SSCEEEEEEEECSSEEEECCTTCCSSTTT-CEEEEEGGGCEEEEECSHHHHHCCSSSCEEEEECT
T ss_pred CceEEEEEEeCCC--CCCceEEEEEEeCCEEEEEecCccccccC-ceeeccceeEEEEecCccccccCCCCCeEEEEEcC
Confidence 4689999987665 48999999999999999999887664433 212233344433221110 112346899999864
Q ss_pred CC---CCceeEEEecchhhHHHHHHHHHhhhc
Q 002835 162 GR---DGRAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 162 ~~---dgrty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
.. ..++|+|+|+|++++..||.||+.|.+
T Consensus 245 ~~~~~~~~~~~l~A~s~~e~~~Wi~air~Ak~ 276 (291)
T 3tca_A 245 QIQKESQYIKYLCCDDARTLSQWVMGIRIAKY 276 (291)
T ss_dssp TCCSCCTTSEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCceEEEEECCCHHHHHHHHHHHHHHhc
Confidence 32 346899999999999999999997763
No 71
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Probab=99.32 E-value=3.3e-12 Score=141.31 Aligned_cols=99 Identities=20% Similarity=0.403 Sum_probs=76.3
Q ss_pred EEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecCC
Q 002835 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGR 163 (875)
Q Consensus 84 v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~~ 163 (875)
+.++|||++++.. .++|++|||||+++.|+||++..+..+. -.+.|.+|.+... ....+++||.|.....
T Consensus 213 ~~k~G~L~K~g~~--~k~WkkRwFVL~~~~L~Yyk~~~~~~p~----G~I~L~~~~v~~~----~~~~~~~~F~I~~~~~ 282 (347)
T 2r09_A 213 PDREGWLLKLGGR--VKTWKRRWFILTDNCLYYFEYTTDKEPR----GIIPLENLSIREV----EDPRKPNCFELYNPSH 282 (347)
T ss_dssp CCEEEEEEEECSS--SCCEEEEEEEEETTEEEEESSTTCSSCS----EEEECTTCEEEEE----CCSSCSSEEEEECSSS
T ss_pred cccCCeeEecCCC--cccceeEEEEEcCCEEEEEcCCCccCCc----EEEEcCCeEEEEc----cCCCCCCEEEEEeCCc
Confidence 5799999887543 5899999999999999999988764332 2356666665432 2346789999885421
Q ss_pred -------------------CCceeEEEecchhhHHHHHHHHHhhhccC
Q 002835 164 -------------------DGRAFTLKAESLEDLYDWKTALENALAQA 192 (875)
Q Consensus 164 -------------------dgrty~fQAdSEeE~~eWI~AI~~ai~~a 192 (875)
..++|+|+|+|++|+..||.+|+.++...
T Consensus 283 ~~~~~~~~k~~~~g~~v~~~~r~y~l~A~s~ee~~~Wi~aI~~ai~~~ 330 (347)
T 2r09_A 283 KGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISRD 330 (347)
T ss_dssp TTCCCCCEEECTTSCEEECCCSCEEEECSSHHHHHHHHHHHHHHHHCC
T ss_pred cccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhcC
Confidence 24899999999999999999999999643
No 72
>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A*
Probab=99.30 E-value=2.9e-12 Score=136.79 Aligned_cols=98 Identities=22% Similarity=0.298 Sum_probs=70.4
Q ss_pred cEEEEeeeEeecCCCCccCceeEEEEEeCC-------eEEEecCCCCCCCC-CCccceeecCCeeecCCCceeeecCCcc
Q 002835 83 AVFKSGPLFISSKGIGWTSWKKRWFILTHT-------SLVFFRSDPSAIPQ-KGSEVNLTLGGIDLNNSGSVVVKADKKL 154 (875)
Q Consensus 83 ~v~KEGyL~k~kKg~~~ksWkKRWfVL~~~-------sL~yYKd~k~~~p~-~g~e~~i~L~~~~l~~s~sv~~~~~KK~ 154 (875)
.++++|||+|+ ++|+||||||+++ .|.||+++++.... ..+.-.+.|..|..... .....+++
T Consensus 9 ~v~k~G~L~K~------K~WkkRwFVL~~~~~~G~~~~L~YYk~~~~~~~~~~~p~g~I~L~~~~~V~~---~~~~~~~~ 79 (264)
T 1qqg_A 9 DVRKVGYLRKP------KSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPLESCFNINK---RADSKNKH 79 (264)
T ss_dssp CEEEEEEEECT------TTCCEEEEEEECCBTTTBSSEEEEESSHHHHHTTCSCCSEEEEGGGEEEEEE---ECCSSCSS
T ss_pred CccEEEEEEEC------CCCEeEEEEEECCCCCCCCCEEEEECCCccccccccCcceEEEeeceEEEEe---ccCCCCCc
Confidence 48999999876 6899999999998 99999988751000 01112355665541100 11245678
Q ss_pred eEEEEecCCCCceeEEEecchhhHHHHHHHHHhhhccC
Q 002835 155 LTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQA 192 (875)
Q Consensus 155 ~FvI~~~~~dgrty~fQAdSEeE~~eWI~AI~~ai~~a 192 (875)
+|.|... +++|+|+|+|++|+..||.+|+.++...
T Consensus 80 ~F~I~t~---~rty~l~A~se~e~~~Wi~aL~~~~~~~ 114 (264)
T 1qqg_A 80 LVALYTR---DEHFAIAADSEAEQDSWYQALLQLHNRA 114 (264)
T ss_dssp EEEEEES---SCEEEEECSSHHHHHHHHHHHHHHC---
T ss_pred EEEEEEC---CEEEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 9999865 7999999999999999999999988543
No 73
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=99.26 E-value=9.8e-12 Score=139.43 Aligned_cols=101 Identities=17% Similarity=0.326 Sum_probs=71.2
Q ss_pred CcEEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeec----CCCceeeecC--Ccce
Q 002835 82 NAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLN----NSGSVVVKAD--KKLL 155 (875)
Q Consensus 82 ~~v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~----~s~sv~~~~~--KK~~ 155 (875)
..++|+|||++++... .++|++|||||+++.|+||+++.+..+.+ .+.|..+... ..... .... ++++
T Consensus 267 ~~~~k~G~L~K~g~~~-~k~WKkRwFVL~~~~L~YYk~~~d~~~~G----~I~L~~~~~~~~v~~~~~~-~~~~~~~~~~ 340 (386)
T 3lju_X 267 RNYLKEGYMEKTGPKQ-TEGFRKRWFTMDDRRLMYFKDPLDAFARG----EVFIGSKESGYTVLHGFPP-STQGHHWPHG 340 (386)
T ss_dssp CCCSEEEEEEECCTTS-CSCCEEEEEEEETTEEEEESSTTCSBCSE----EEECCCGGGTCEEEESCCT-TCCSCCSCEE
T ss_pred cccceeeeEEEECCCC-CCCCcccEEEEECCEEEEEecCCCcccce----EEEeecceeeeeecccCCc-cccccCCCcE
Confidence 3478999988765442 38999999999999999999987654322 2333322211 00000 0011 2588
Q ss_pred EEEEecCCCCceeEEEecchhhHHHHHHHHHhhhcc
Q 002835 156 TVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQ 191 (875)
Q Consensus 156 FvI~~~~~dgrty~fQAdSEeE~~eWI~AI~~ai~~ 191 (875)
|.|... +++|+|+|+|++|+.+||.||+.++..
T Consensus 341 F~I~t~---~rty~l~A~s~~e~~~Wi~aL~~~i~~ 373 (386)
T 3lju_X 341 ITIVTP---DRKFLFACETESDQREWVAAFQKAVDR 373 (386)
T ss_dssp EEEECS---SCEEEEEESSHHHHHHHHHHHHHHHHS
T ss_pred EEEEeC---CeEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 988865 699999999999999999999999964
No 74
>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus}
Probab=99.22 E-value=1e-11 Score=133.36 Aligned_cols=102 Identities=24% Similarity=0.344 Sum_probs=74.1
Q ss_pred EEEEeeeEee-----cCC-----CCccCceeEEEEEeCCeEEEecCCCCCCC--CCCccceeecCCeeecCCCceeeecC
Q 002835 84 VFKSGPLFIS-----SKG-----IGWTSWKKRWFILTHTSLVFFRSDPSAIP--QKGSEVNLTLGGIDLNNSGSVVVKAD 151 (875)
Q Consensus 84 v~KEGyL~k~-----kKg-----~~~ksWkKRWfVL~~~sL~yYKd~k~~~p--~~g~e~~i~L~~~~l~~s~sv~~~~~ 151 (875)
+.|+|||.+. +++ .+.+.|+++||||++..|+|||+...... ...+...+.+.+|.+.... +...
T Consensus 11 v~k~G~L~rK~~l~~~k~~K~~~~~~r~Wkk~w~VLkg~~L~fYKde~~~~~~~~~~p~~~I~L~ga~v~~a~---d~~k 87 (279)
T 3a8n_A 11 VRKAGALAVKNFLVHKKNKKVESATRRKWKHYWVSLKGCTLFFYETDGRSGIDHNSVPKHAVWVENSIVQAVP---EHPK 87 (279)
T ss_dssp CSCEEEEEEEEEEEEETTTEEECCCCCCCEEEEEEEETTEECCBCCC--------CCCSSCCBCCSCEECCCT---TSSS
T ss_pred eeEEEEEEEEEEecccCCcccCCccCCCCeEEEEEEeCCEEEEEecccccccccccCCCceEeccCcEEEecc---ccCC
Confidence 7899999762 221 24689999999999999999999874321 1123344667777666321 2345
Q ss_pred CcceEEEEecCCCCceeEEEecchhhHHHHHHHHHhhhc
Q 002835 152 KKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 152 KK~~FvI~~~~~dgrty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
++++|.|.. .+|++|+|||++++||+.||.+|..++.
T Consensus 88 Kk~vF~L~t--~~g~~yLFQA~s~eEm~~WI~aI~~a~~ 124 (279)
T 3a8n_A 88 KDFVFCLSN--SLGDAFLFQTTSQTELENWITAIHSACA 124 (279)
T ss_dssp SCSCCCEEE--TTTEEEECCCSCHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEc--CCCCEEEEeCCCHHHHHHHHHHHHHHHh
Confidence 778888874 4789999999999999999999999874
No 75
>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; beta-barrel, hydrolase; NMR {Rattus norvegicus} SCOP: b.55.1.1
Probab=99.18 E-value=9.8e-11 Score=114.44 Aligned_cols=103 Identities=16% Similarity=0.287 Sum_probs=73.4
Q ss_pred EEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCC---------CCC---CC-------------C------------
Q 002835 85 FKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDP---------SAI---PQ-------------K------------ 127 (875)
Q Consensus 85 ~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k---------~~~---p~-------------~------------ 127 (875)
+|+||||+...- .+.|++|||||++..|+|++... +.. ++ .
T Consensus 2 ~k~G~L~~~~~~--~~~w~~~~fvL~~~~L~y~~e~s~~~~~~~~e~~~~~~~~~~~~~~~n~~fh~~~~~~~e~~~~~l 79 (150)
T 2fjl_A 2 IKNGILYLEDPV--NHEWYPHYFVLTSSKIYYSEETSSDQGNEDEEEPKEASGSTELHSSLEVLFQGPNPAILEPEREHL 79 (150)
T ss_dssp CEEEEEEEEETT--TTEEEEEEEEEETTEEEECCCCSCSSCCSCCCCSCCCCCSCCCCCCSSSGGGSSCSTTSCTTCSSS
T ss_pred CcceEEEeecCC--CCCceEeEEEEECCEEEEEeeccccccccCcccccccCCchhhcccchhccccCCccccchhHhcc
Confidence 589999988653 48999999999999999998221 110 00 0
Q ss_pred ------Cc--cceeecCCeeecCCCceeeecCCcceEEEEecCCCCceeEEEecchhhHHHHHHHHHhhhcc
Q 002835 128 ------GS--EVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQ 191 (875)
Q Consensus 128 ------g~--e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~~dgrty~fQAdSEeE~~eWI~AI~~ai~~ 191 (875)
|. .-.+.|.+|.+..... .+..+.+.|.|.+...+.++|.|.|+|.++|.+||.||+.++..
T Consensus 80 ~E~~~lG~l~kG~IdL~gc~V~~~~~--~~~~~~~vF~I~~~~~~~~~~~laAds~Eem~dW~kaIreaa~~ 149 (150)
T 2fjl_A 80 DENSPLGDLLRGVLDVPACQIAIRPE--GKNNRLFVFSISMPSVAQWSLDVAADSQEELQDWVKKIREVAQT 149 (150)
T ss_dssp CTTTTTTTCCCEEECSTTCEEEEETT--CSSSCSCEEEEECTTTSSCCEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred cccccccccccceEecCccEEEeccC--CCCCCceEEEEeCCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 00 1235555555543110 13458899999887665679999999999999999999999853
No 76
>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.18 E-value=8.8e-11 Score=112.91 Aligned_cols=101 Identities=16% Similarity=0.274 Sum_probs=76.6
Q ss_pred EEEeeeEeec-CCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecCC
Q 002835 85 FKSGPLFISS-KGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGR 163 (875)
Q Consensus 85 ~KEGyL~k~k-Kg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~~ 163 (875)
..++||-+.+ ++...+.|++|||||++..|+|||+..+.. +.+...+.|.+|.+.+..++ ..++|+|.+..+..
T Consensus 10 el~~~l~~~~pkk~tlK~~KrrWFvlk~~~L~YyK~kee~~--~ePig~I~L~gceV~pd~~~---~~~kf~ikl~iPs~ 84 (137)
T 2ys3_A 10 ELKDHLRIFRPRKLTLKGYRQHWVVFKETTLSYYKSQDEAP--GDPIQQLNLKGCEVVPDVNV---SGQKFCIKLLVPSP 84 (137)
T ss_dssp CEECCCEECCTTSCCSSSSCCCEEEECSSCEEEESSTTTTT--SCCSCCBCTTTCEEEECCBG---GGTBEEEEEEEECS
T ss_pred chhHHHHhhCccccccccceeEEEEEeCCEEEEECCchhcc--CCCceEEECCCCEEeccccc---cCCceEEEEEccCC
Confidence 4778887643 455689999999999999999999887642 22334578889987765322 35777776665533
Q ss_pred C-CceeEEEecchhhHHHHHHHHHhhhc
Q 002835 164 D-GRAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 164 d-grty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
+ .++|+|.|++++++.+||.|++.|..
T Consensus 85 ~g~r~y~l~cdsEeqy~~WMaA~rlAsk 112 (137)
T 2ys3_A 85 EGMSEIYLRCQDEQQYARWMAGCRLASK 112 (137)
T ss_dssp SSEEEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred CCceEEEEECCCHHHHHHHHHHHHHhcc
Confidence 2 38999999999999999999998763
No 77
>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=99.17 E-value=3e-11 Score=113.79 Aligned_cols=104 Identities=14% Similarity=0.253 Sum_probs=69.4
Q ss_pred EEeeeEeecCCCCcc-CceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeee----cCCCce-eeecCCcceEEEE
Q 002835 86 KSGPLFISSKGIGWT-SWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDL----NNSGSV-VVKADKKLLTVLF 159 (875)
Q Consensus 86 KEGyL~k~kKg~~~k-sWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l----~~s~sv-~~~~~KK~~FvI~ 159 (875)
.+|||.+.++++..+ .|++|||||++..|+||+++.... ...+...+.+..+.. ...+.+ ....+..+.|.|+
T Consensus 3 ~eGwl~~pk~~~~~k~~Wkkr~~vL~~~kL~~y~~~~~~~-~~~p~~~Idl~~~~~V~~V~~~d~i~~~~~~~p~iF~I~ 81 (117)
T 2rov_A 3 LEGWLSLPVRNNTKKFGWVKKYVIVSSKKILFYDSEQDKE-QSNPYMVLDIDKLFHVRPVTQTDVYRADAKEIPRIFQIL 81 (117)
T ss_dssp SEEEEECCCCSSSSCCCCCEEEEEEETTEEEEESCHHHHH-TTCCSEEECGGGEEEEEECCTTTCSSSCTTTGGGEEEEE
T ss_pred eEEEEEeecCCCccCCCcEEEEEEEECCEEEEEECCCCcc-cCCceEEEECcccEEEEEcccccccccccccCCcEEEEE
Confidence 589999876766667 899999999999999999764320 001112344433221 111111 1122345678887
Q ss_pred ecC---CCCceeEEEecchhhHHHHHHHHHhhhc
Q 002835 160 PDG---RDGRAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 160 ~~~---~dgrty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
... ..+++|+|.|+|++|++.||.+|..+|.
T Consensus 82 ~~~~~~~~~~~l~l~A~s~~e~~~WV~aL~~~i~ 115 (117)
T 2rov_A 82 YANEGISSAKNLLLLANSTEEQQKWVSRLVKKIP 115 (117)
T ss_dssp ECSSSSTTCEEEEEECSSHHHHHHHHHHHHHHCT
T ss_pred eCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHhc
Confidence 542 3358999999999999999999999873
No 78
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=99.10 E-value=8.1e-11 Score=131.99 Aligned_cols=97 Identities=16% Similarity=0.255 Sum_probs=68.2
Q ss_pred EEEEeeeEeecCCCCccCceeEEEEE--eCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEe-
Q 002835 84 VFKSGPLFISSKGIGWTSWKKRWFIL--THTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFP- 160 (875)
Q Consensus 84 v~KEGyL~k~kKg~~~ksWkKRWfVL--~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~- 160 (875)
..|+|||+|+++. .++|++||||| +++.|.||+++.+..|.+ .+.|..+..... .....+.++|.|..
T Consensus 146 ~~keG~L~KrG~~--~k~WkrRwFVL~~~~~~L~Yy~~~~~~~p~g----~I~L~~~~~~~~---~~~~~~~~~f~I~~~ 216 (386)
T 3lju_X 146 GYREGFLWKRGRD--NGQFLSRKFVLTEREGALKYFNRNDAKEPKA----VMKIEHLNATFQ---PAKIGHPHGLQVTYL 216 (386)
T ss_dssp SEEEEEEEEECSS--SCCEEEEEEEEETTTTEEEEEC-----CCSE----EEEGGGEEEEEC---HHHHTSTTCEEEEEE
T ss_pred cccccceeeeccc--cCCceEEEEEEEcCCCEEEEECCCCccCccc----EEEeeccEEEEc---ccccCCCceEEEEEe
Confidence 5799999988766 48999999999 899999999987654422 244444332211 12346888998762
Q ss_pred cCCCCceeEEEecchhhHHHHHHHHHhhh
Q 002835 161 DGRDGRAFTLKAESLEDLYDWKTALENAL 189 (875)
Q Consensus 161 ~~~dgrty~fQAdSEeE~~eWI~AI~~ai 189 (875)
.....|+|+|+|+|.+++.+|+.+|+.+.
T Consensus 217 ~~~~~R~y~l~A~s~~e~~~Wi~aIr~a~ 245 (386)
T 3lju_X 217 KDNSTRNIFIYHEDGKEIVDWFNALRAAR 245 (386)
T ss_dssp ETTEEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred cCCCceEEEEEcCCHHHHHHHHHhhhhcc
Confidence 22336899999999999999999999774
No 79
>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.04 E-value=1.1e-09 Score=103.49 Aligned_cols=103 Identities=16% Similarity=0.114 Sum_probs=69.7
Q ss_pred EEEEeeeEeecCCCCccCceeEEEEEeCCe------EEEecCCCCCCCCCCccceeecCCeeec-CCCceeeecCCcceE
Q 002835 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTS------LVFFRSDPSAIPQKGSEVNLTLGGIDLN-NSGSVVVKADKKLLT 156 (875)
Q Consensus 84 v~KEGyL~k~kKg~~~ksWkKRWfVL~~~s------L~yYKd~k~~~p~~g~e~~i~L~~~~l~-~s~sv~~~~~KK~~F 156 (875)
+.|+||||++..+.+.+.|+||||||.+.+ |-||...........+.-.|.|..|.-. +...-.......+.|
T Consensus 12 ~vk~G~L~~q~q~~fgkKWrk~w~vLy~~S~~GvaRLE~yd~~ek~~r~~~~rrVIrLsdCisV~~~~~e~~~pk~~~aF 91 (127)
T 2d9w_A 12 AVKQGFLYLQQQQTFGKKWRRFGASLYGGSDCALARLELQEGPEKPRRCEAARKVIRLSDCLRVAEAGGEASSPRDTSAF 91 (127)
T ss_dssp SSEEEEEEECBCSSSSCBCCEEEEEEECCSSSSCCEEEEECCCSCSSSCSCCEEEECGGGEEEEEECCSCSSSCSSCEEE
T ss_pred cccceEEEecccchhhhhhheeEEEEecCCCCCceeeeeeeccCccccCCCCceEEEhhhCCeEecccCccCCCCcceEE
Confidence 689999999987444567999999999874 8899987643221123344667666432 211000011233556
Q ss_pred EEEecCCCCceeEEEecchhhHHHHHHHHHhhhc
Q 002835 157 VLFPDGRDGRAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 157 vI~~~~~dgrty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
.|.+. .++|+|.|++. ++.+||.+|...+.
T Consensus 92 ~l~T~---er~~~laAe~~-E~~~Wi~~ic~~aF 121 (127)
T 2d9w_A 92 FLETK---ERLYLLAAPAA-ERGDWVQAICLLAF 121 (127)
T ss_dssp EEEES---SCEEEEEECHH-HHHHHHHHHHHHHT
T ss_pred EEEeC---CcEEEEEeCcH-HHHHHHHHHHHHhc
Confidence 66654 69999999975 89999999999875
No 80
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=98.98 E-value=9.8e-10 Score=123.84 Aligned_cols=102 Identities=17% Similarity=0.294 Sum_probs=67.0
Q ss_pred cEEEEeeeEeecCCCCccCceeEEEEEe-CCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEec
Q 002835 83 AVFKSGPLFISSKGIGWTSWKKRWFILT-HTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPD 161 (875)
Q Consensus 83 ~v~KEGyL~k~kKg~~~ksWkKRWfVL~-~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~ 161 (875)
.|+|+|||+|++ ...++|++|||||+ ++.|+|||+.+...+.+ .+.+..+.+.....+.....+.+||.|...
T Consensus 5 ~v~keG~L~K~g--~~~k~Wk~r~fvL~~~~~l~yyk~~~~~~~~~----~i~l~~~~~~~~~~~~~~~~~~~~f~I~~~ 78 (446)
T 4ejn_A 5 AIVKEGWLHKRG--EYIKTWRPRYFLLKNDGTFIGYKERPQDVDQR----EAPLNNFSVAQCQLMKTERPRPNTFIIRCL 78 (446)
T ss_dssp CEEEEEEEEEEE--TTTTEEEEEEEEEETTSBEEEESSCC-----------CCCGGGBCTTCEEEEECSSSTTEEEEEEE
T ss_pred eEEEEeeEEeec--cccccccceEEEEeeCCEEEEEecCCCCCccC----cccccCccccceeecCCCCCCCceeEEEcC
Confidence 389999888774 44589999999998 89999999987653322 122333322221111223345778988643
Q ss_pred C-CCCceeEEEecchhhHHHHHHHHHhhhc
Q 002835 162 G-RDGRAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 162 ~-~dgrty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
. ......+|++++++++..|+.||+.++.
T Consensus 79 ~~~~~~~r~~~~~~~ee~e~W~~ai~~~i~ 108 (446)
T 4ejn_A 79 QWTTVIERTFHVETPEEREEWTTAIQTVAD 108 (446)
T ss_dssp ETTEEEEEEEECSSHHHHHHHHHHHHHHCC
T ss_pred CCceeeeeEEecCCHHHHHHHHHHHHhhhh
Confidence 1 1112338999999999999999999875
No 81
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=98.95 E-value=2.6e-09 Score=113.52 Aligned_cols=105 Identities=19% Similarity=0.134 Sum_probs=72.3
Q ss_pred cEEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCce--eeecCCcceEEEEe
Q 002835 83 AVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSV--VVKADKKLLTVLFP 160 (875)
Q Consensus 83 ~v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv--~~~~~KK~~FvI~~ 160 (875)
...++||||+++.+. ++|+||||+|+++.|+||+..+.. ..++-...+.+..+.+-..... ..+.-+++||.|.+
T Consensus 131 ~P~~~G~L~~ke~~~--K~WkkRyfvLr~sgLy~~~k~~sk-~~r~l~~~~~L~~~~vy~~~~~kKk~kaPt~~~F~ik~ 207 (256)
T 3hk0_A 131 SPEIQGFLHVKELGK--KSWKKLYVCLRRSGLYCSTKGTSA-APRHLQLLADLEDSNIFSLIAGRKQYNAPTDHGLCIKP 207 (256)
T ss_dssp CEEEEEEEEEECTTS--SCEEEEEEEEETTEEEEESSTTCC-CGGGEEEEECCTTEEEEEESSTHHHHCCSSSEEEEEEE
T ss_pred CCcceeEEEEecCCC--CcceEEEEEEeCCEEEEEecCCCC-ccccceEEEEcCCCEEEEecccccccCCCCCCEEEEEc
Confidence 357999999887664 899999999999999999866532 2121111235555555432110 01123478999986
Q ss_pred cCC---CCceeEEEecchhhHHHHHHHHHhhhc
Q 002835 161 DGR---DGRAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 161 ~~~---dgrty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
... ....++|||++++++..|++||+.+.+
T Consensus 208 ~k~~~~~~~~~~lcaede~~~~~W~~aIr~ak~ 240 (256)
T 3hk0_A 208 NKVRNETKELRLLCAEDEQTRTSWMTAFRLLKY 240 (256)
T ss_dssp TTCSSCCTTCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred ccccCCCceEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 532 124799999999999999999998864
No 82
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=98.89 E-value=2.2e-09 Score=115.33 Aligned_cols=104 Identities=19% Similarity=0.265 Sum_probs=69.2
Q ss_pred EEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCce--eeecCCcceEEEEec
Q 002835 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSV--VVKADKKLLTVLFPD 161 (875)
Q Consensus 84 v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv--~~~~~KK~~FvI~~~ 161 (875)
..++||||+++.+. ++|+||||||+++.|+||+..+.. ..+.....+.|.++.+-..... ..+.-+.+||.|.+.
T Consensus 158 pe~~G~L~~k~~~~--k~WkkRyfvLr~sgLyy~~K~~sk-~~r~l~~l~~L~~~~VY~~~~~kkk~kaPt~~~F~ik~~ 234 (281)
T 4gmv_A 158 PEIEGVLWLKDDGK--KSWKKRYFLLRASGIYYVPKGKAK-VSRDLVCFLQLDHVNVYYGQDYRNKYKAPTDYCLVLKHP 234 (281)
T ss_dssp CCCEEEEEEECTTS--SCEEEEEEEECSSCEEEC----------CCEEEECGGGCEEEEESSHHHHTCCSCSCEEEEECT
T ss_pred CccEEEEEEECCCC--CCCeEEEEEEeCCEEEEEeCCCCC-ccccceEEEEcCCcEEEEecccccccCCCCCcEEEEecC
Confidence 46899999887765 799999999999999999865432 2222222235566555432111 012346899999864
Q ss_pred CC---CCceeEEEecchhhHHHHHHHHHhhhc
Q 002835 162 GR---DGRAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 162 ~~---dgrty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
.. ...+++|||++++++..||.||+-+.+
T Consensus 235 ~~~~~~~~~~~~caede~~~~~Wv~Air~ak~ 266 (281)
T 4gmv_A 235 QIQKKSQYIKYLCCDDVRTLHQWVNGIRIAKY 266 (281)
T ss_dssp TCCSCCTTCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCceEEEEeCCHHHHHHHHHHHHHHhh
Confidence 32 235899999999999999999998764
No 83
>4bbk_A Kindlin-1, fermitin family homolog 1; PH domain, cell adhesion; 2.10A {Mus musculus}
Probab=98.88 E-value=4.5e-09 Score=102.60 Aligned_cols=100 Identities=19% Similarity=0.245 Sum_probs=73.7
Q ss_pred EEEeeeEee-cCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecCC
Q 002835 85 FKSGPLFIS-SKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGR 163 (875)
Q Consensus 85 ~KEGyL~k~-kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~~ 163 (875)
...|||-.. -++...|.||+||||+++..|.|||++.+.. +.+...+.|++|.+.+.. .....||++.+..+..
T Consensus 27 eL~dyLk~~~pkrltLKgfKryWfv~kDt~LsyYKSkEe~~--geP~~~inLrGCEVtPDV---nva~~Kf~ikL~ip~~ 101 (165)
T 4bbk_A 27 KLADYLKLFRPKKLMLKACKQYWFVFKDTSIAYFKNKELEQ--GEPIEKLNLRGCEIVPDV---NVSGRKFGIKLLIPVA 101 (165)
T ss_dssp CEEEEEEEEC-------CCEEEEEEEETTEEEEESSGGGTT--SCCSEEEECTTCEEEEEE---ETTTTEEEEEEEEEET
T ss_pred hhHhHHHhhcccccccccceeEEEEEeCCEEEEEcCHHHhc--CCCceEEecCccEEeccc---ccccceeeEEEecCCC
Confidence 356988653 4566789999999999999999999988753 445567889999988642 2245777777766555
Q ss_pred CCc-eeEEEecchhhHHHHHHHHHhhh
Q 002835 164 DGR-AFTLKAESLEDLYDWKTALENAL 189 (875)
Q Consensus 164 dgr-ty~fQAdSEeE~~eWI~AI~~ai 189 (875)
+|. +++|.|+++.++..||.|++-|.
T Consensus 102 ~gm~e~~LrcdsE~QYa~WMAAcrLAs 128 (165)
T 4bbk_A 102 DGMNEVYLRCDHEDQYARWMAACILAS 128 (165)
T ss_dssp TEEEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CcceeeeeecCCHHHHHHHHHHhhhcc
Confidence 554 89999999999999999999776
No 84
>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin activation, cytoplas membrane, cell adhesion; HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A*
Probab=98.86 E-value=7.2e-09 Score=102.17 Aligned_cols=99 Identities=14% Similarity=0.211 Sum_probs=76.3
Q ss_pred EEeeeEe-ecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecCC-
Q 002835 86 KSGPLFI-SSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGR- 163 (875)
Q Consensus 86 KEGyL~k-~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~~- 163 (875)
..+||-. +-++...|.||+||||+++..|.|||++.+.. +.+...+.|++|.+.+.. .....||++.+..+..
T Consensus 49 L~dyLk~~~pk~~tLKgyKryWFv~kd~~LsyYKskEe~~--geP~~~I~LrGCEVtpDV---nva~~Kf~IkL~vP~~~ 123 (173)
T 4f7h_A 49 LADYIKVFKPKKLTLKGYKQYWCTFKDTSISCYKSKEESS--GTPAHQMNLRGCEVTPDV---NISGQKFNIKLLIPVAE 123 (173)
T ss_dssp EEEEEEEECCBTTBCCCCEEEEEEEETTEEEEESCGGGCS--SCCSEEEECTTCEEEEEE---ETTTTEEEEEEEEEETT
T ss_pred hHhHHHhhcchhcccccceeEEEEEeCCEEEEEcCHhHhc--CCCceEEecCceEEeccc---cccccceeEEEeccCCC
Confidence 5698865 44567789999999999999999999987642 445566889999988642 2245666666555433
Q ss_pred CCceeEEEecchhhHHHHHHHHHhhh
Q 002835 164 DGRAFTLKAESLEDLYDWKTALENAL 189 (875)
Q Consensus 164 dgrty~fQAdSEeE~~eWI~AI~~ai 189 (875)
...+|+|.|+++..+..||.|++-|.
T Consensus 124 gm~e~~Lrcd~E~qya~WMAAcrLAs 149 (173)
T 4f7h_A 124 GMNEIWLRCDNEKQYAHWMAACRLAS 149 (173)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CcceeeeecCCHHHHHHHHHHhhhhc
Confidence 34689999999999999999998776
No 85
>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase, PKB, pleckstrin homology domain, inositol phosphate, signal transduction; HET: 4PT; 1.45A {Homo sapiens} SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A
Probab=98.63 E-value=1.1e-07 Score=92.87 Aligned_cols=89 Identities=12% Similarity=0.194 Sum_probs=63.5
Q ss_pred cEEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecC
Q 002835 83 AVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDG 162 (875)
Q Consensus 83 ~v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~ 162 (875)
.|++.|||+++++ . .|++|||+|++..+.||-++... ...+.|.+.....+.. ....+|.|.++
T Consensus 51 ~Ilk~G~v~KrkG-l---~~kkR~liLT~~PrL~Yvdp~~~---------~~KGeIpls~~l~ve~--k~~~~F~I~Tp- 114 (151)
T 1w1g_A 51 LILKMGPVDKRKG-L---FARRRQLLLTEGPHLYYVDPVNK---------VLKGEIPWSQELRPEA--KNFKTFFVHTP- 114 (151)
T ss_dssp CEEEEEEEEEEET-T---EEEEEEEEEETTTEEEEEETTTT---------EEEEEECCCTTCEEEE--SSSSEEEEEET-
T ss_pred cEEEEEEEEeccc-C---cceeEEEEEcCCceEEEEcCccc---------cccceEecCCCeeEEE--cCCCEEEEECC-
Confidence 4999999998643 3 49999999999999998877643 1222333333222222 22336777665
Q ss_pred CCCceeEEEecchhhHHHHHHHHHhhhc
Q 002835 163 RDGRAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 163 ~dgrty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
+|+|+|.+. ...+.+|+.||..++.
T Consensus 115 --~RtY~~~d~-~~~AqeWv~aI~~~~~ 139 (151)
T 1w1g_A 115 --NRTYYLMDP-SGNAHKWCRKIQEVWR 139 (151)
T ss_dssp --TEEEEEECT-TSCHHHHHHHHHHHHH
T ss_pred --CceEEEEcC-ccCHHHHHHHHHHHHH
Confidence 699999997 8999999999999874
No 86
>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.36 E-value=2e-06 Score=81.27 Aligned_cols=102 Identities=17% Similarity=0.227 Sum_probs=68.1
Q ss_pred CCcEEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeec-CCC--ceeeecCCcceEE
Q 002835 81 GNAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLN-NSG--SVVVKADKKLLTV 157 (875)
Q Consensus 81 ~~~v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~-~s~--sv~~~~~KK~~Fv 157 (875)
++.++|+||+-.....- +.|||||++|...++.+|+++.+..+-+ .+.|..|.-. ... ++.......+||+
T Consensus 5 ~s~vlkeGW~VH~t~~d--~~rKRHYWrLD~K~Itlf~~e~~~~~yk----eIpL~eIl~v~~~~~~~~l~~~~~~hcFE 78 (125)
T 2coa_A 5 SSGTLREGWVVHYSNKD--TLRKRHYWRLDCKCITLFQNNTTNRYYK----EIPLSEILTVESAQNFSLVPPGTNPHCFE 78 (125)
T ss_dssp CCSCSEEEEEEECCSSS--CCCEEEEEEECSSEEEEESSSSCSSCSE----EEETTTCCEEEESCCCSSSCTTSCCEEEE
T ss_pred CCceeecceEEEEccCC--ccccceeeEecCCeEEEEecCCCCceee----eeehhHeecccccccccccCCCCCCceEE
Confidence 34589999877655444 7899999999999999999987654322 2333322111 100 0000112559999
Q ss_pred EEecCCCCceeEEEec---ch--------hhHHHHHHHHHhhhcc
Q 002835 158 LFPDGRDGRAFTLKAE---SL--------EDLYDWKTALENALAQ 191 (875)
Q Consensus 158 I~~~~~dgrty~fQAd---SE--------eE~~eWI~AI~~ai~~ 191 (875)
|... .++|+++++ .. +.++.|..||++|+..
T Consensus 79 i~T~---~~~yyVg~~~~~~p~~~sg~g~~~a~~W~~aIrqALmP 120 (125)
T 2coa_A 79 IVTA---NATYFVGEMPGGTPGGPSGQGAEAARGWETAIRQALMS 120 (125)
T ss_dssp EECS---SCCCCEECCSCCCSSSCCCCCSHHHHHHHHHHHHHGGG
T ss_pred EEeC---CeEEEEccCCCCCCCCcCccccHHHHHHHHHHHhhccC
Confidence 9875 789999984 11 4599999999999963
No 87
>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.20 E-value=7.7e-06 Score=77.62 Aligned_cols=102 Identities=15% Similarity=0.245 Sum_probs=69.8
Q ss_pred CCcEEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeee-cCCCcee--eecCCcceEE
Q 002835 81 GNAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDL-NNSGSVV--VKADKKLLTV 157 (875)
Q Consensus 81 ~~~v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l-~~s~sv~--~~~~KK~~Fv 157 (875)
++.++|+||+-...... +.|||+|++|...++.+|+++....+-+ .+.|..|.- ....... ......+||+
T Consensus 5 ~s~vlkeGWmVH~t~~d--~~rKRHYWrLD~K~Itlf~~e~~~k~yk----eIpLseIL~v~~~~~~~~~~~~~~phcFE 78 (129)
T 2d9z_A 5 SSGMVKEGWMVHYTSRD--NLRKRHYWRLDSKCLTLFQNESGSKYYK----EIPLSEILRISSPRDFTNISQGSNPHCFE 78 (129)
T ss_dssp CTTSEEEEEEEEEESSC--CCCEEEEEEEESSCEEEESCSSCCSCCC----EECTTTCCEECCTTCCCCSSSCSCCCSEE
T ss_pred CCceeecceEEEEccCC--ccccceeeEecCCeEEEEecCCCCceec----eeeHHHhcccccccCccccCCCCCCceEE
Confidence 34589999887665554 6799999999999999999987653322 233443321 1111000 0112448999
Q ss_pred EEecCCCCceeEEEecc---------------hhhHHHHHHHHHhhhcc
Q 002835 158 LFPDGRDGRAFTLKAES---------------LEDLYDWKTALENALAQ 191 (875)
Q Consensus 158 I~~~~~dgrty~fQAdS---------------EeE~~eWI~AI~~ai~~ 191 (875)
|... ..+|++.++. .+.++.|..||++|+..
T Consensus 79 i~T~---~~~y~Vge~~~~~~~~~~~~~sg~g~~~a~~We~aIrqALmP 124 (129)
T 2d9z_A 79 IITD---TMVYFVGENNGDSSHNPVLAATGVGLDVAQSWEKAIRQALMS 124 (129)
T ss_dssp EECS---SCEEEECBCCSCCSCCTTTTTTTCBHHHHHHHHHHHHHHHHH
T ss_pred EEEC---CEEEEEccCCCCCCCCccccccccchHHHHHHHHHHHHhccC
Confidence 9864 7899998753 58899999999999863
No 88
>1v5m_A SH2 and PH domain-containing adapter protein APS; adaptor protein, pleckstrin homology domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=97.57 E-value=0.00083 Score=64.05 Aligned_cols=101 Identities=19% Similarity=0.368 Sum_probs=66.2
Q ss_pred cEEEEeee-EeecC-----CCCccCceeEEEEEeCC------eEEEecCCCCCCCCCCccceeecCCe-eecCCCceeee
Q 002835 83 AVFKSGPL-FISSK-----GIGWTSWKKRWFILTHT------SLVFFRSDPSAIPQKGSEVNLTLGGI-DLNNSGSVVVK 149 (875)
Q Consensus 83 ~v~KEGyL-~k~kK-----g~~~ksWkKRWfVL~~~------sL~yYKd~k~~~p~~g~e~~i~L~~~-~l~~s~sv~~~ 149 (875)
.+.+||.| |.... ......|.|+|++|+.. .|-||-.++..+|..+ +.+..| .++.... .+-
T Consensus 17 e~~kEG~l~~~~~~~~~~~~~~~~~W~k~RLvL~k~g~G~~y~LEfy~PPkssKpK~~----i~cs~I~EVR~tt~-LEm 91 (136)
T 1v5m_A 17 DIQREGALRFMVADDAASGPGGTAQWQKCRLLLRRAVAGERFRLEFFVPPKASRPKVS----IPLSAIIEVRTTMP-LEM 91 (136)
T ss_dssp SCCEEEEEEEEECSCCCSSSCCSCCCEEEEEEEEECSSSCCEEEEEESSTTSSSCSSC----EETTTCCBCCCCCC-SSS
T ss_pred eeeeeeeeeeecccccccccCcccchhheeeEEEEccCCCceEEEEecCCcccCCccc----cchhhhhhhhhccc-ccc
Confidence 37899987 33321 22457999999999853 3678877666544332 322222 2222211 122
Q ss_pred cCCcceEEEEecCCCCceeEEEecchhhHHHHHHHHHhhhc
Q 002835 150 ADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 150 ~~KK~~FvI~~~~~dgrty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
.++-+.|++. ..++..|+|.|.++.+|+.|+..|+..+.
T Consensus 92 PD~~nTFVlK--~~n~~eyi~ea~d~~q~~sWla~Ir~C~~ 130 (136)
T 1v5m_A 92 PEKDNTFVLK--VENGAEYILETIDSLQKHSWVADIQGCVD 130 (136)
T ss_dssp CCCTTEECCB--CTTSCBEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCccceEEEE--ecCCcEEEEEcCCHHHHHHHHHHHHhhcC
Confidence 4566767765 44567999999999999999999998875
No 89
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Probab=97.20 E-value=0.00029 Score=73.19 Aligned_cols=38 Identities=32% Similarity=0.699 Sum_probs=32.0
Q ss_pred EEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCC
Q 002835 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSA 123 (875)
Q Consensus 84 v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~ 123 (875)
..++|||+++ |+..++|+||||||+++.|.||+.....
T Consensus 21 ~~~~g~l~~~--~~~~~~w~~rw~vl~~~~~~~~~~~~~~ 58 (228)
T 3tfm_A 21 PYFHSFLYMN--GGLMNSWKRRWCVLKDETFLWFRSKQEA 58 (228)
T ss_dssp CCEEEEEEEC--CTTTCCCEEEEEEEETTEEEEESSCCCS
T ss_pred CceEEEEeec--CcccccceEEEEEEeCCEEEEeccCCCc
Confidence 5799988876 5567999999999999999999976543
No 90
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens}
Probab=97.18 E-value=0.0015 Score=65.89 Aligned_cols=103 Identities=15% Similarity=0.228 Sum_probs=66.9
Q ss_pred CcEEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCC---CccceeecCCeeecCCCceeeecCCcceEEE
Q 002835 82 NAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQK---GSEVNLTLGGIDLNNSGSVVVKADKKLLTVL 158 (875)
Q Consensus 82 ~~v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~---g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI 158 (875)
...+++|.|.+...+ +.|+.+|++|-.+.|+|.+...+...-. .....+.|..+.++.. ..+++.+|.|
T Consensus 69 R~Ll~eG~L~~k~~~---~~~~d~~~fLf~D~Ll~~~~~~~ky~~~~~~~~~pvi~L~~~~vre~-----a~d~~~~fli 140 (185)
T 2lg1_A 69 KKLVRDGSVFLKNAA---GRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREV-----AHEEKGLFLI 140 (185)
T ss_dssp SCEEEEEEEEEECTT---CCEEEEEEEEESSEEECCEEETTEEECCCCSSSCSEEESSSCEEECC-----SSCSSEEEEE
T ss_pred CceeeeceEEEeccC---CCeeeEEEEeecCEEEEEEecCCEEEEEcccCCCCeEeecceEEecc-----CCCCCeEEEE
Confidence 348999988644332 2689999999999888875322111000 0011244555555532 1245666666
Q ss_pred EecCCCCceeEEEecchhhHHHHHHHHHhhhccC
Q 002835 159 FPDGRDGRAFTLKAESLEDLYDWKTALENALAQA 192 (875)
Q Consensus 159 ~~~~~dgrty~fQAdSEeE~~eWI~AI~~ai~~a 192 (875)
.........|.|+|.|.++++.|+.+|..|+...
T Consensus 141 ~~~~~g~~~yel~a~s~~er~~W~~~I~~Ai~~~ 174 (185)
T 2lg1_A 141 SMGMTDPEMVEVHASSKEERNSWIQIIQDTINTL 174 (185)
T ss_dssp CCSSSCCCCEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred EecCCCCeEEEEEcCCHHHHHHHHHHHHHHHHhC
Confidence 6443345789999999999999999999998643
No 91
>3ml4_A Protein DOK-7; tyrosine phosphorylation, adapter protein, dimerization, SIG protein; HET: PTR; 2.60A {Mus musculus}
Probab=97.14 E-value=0.0011 Score=68.48 Aligned_cols=98 Identities=18% Similarity=0.284 Sum_probs=61.5
Q ss_pred EEEEeeeEeecCCCCccCceeEEEEEeCC-------eEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceE
Q 002835 84 VFKSGPLFISSKGIGWTSWKKRWFILTHT-------SLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLT 156 (875)
Q Consensus 84 v~KEGyL~k~kKg~~~ksWkKRWfVL~~~-------sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~F 156 (875)
++.||+.-++. .|.|++|||||++- .|..|||.++.........+++|..+.--.. ...-..+.+..
T Consensus 9 ~v~eg~vk~r~----~KkWk~rw~vlrk~s~~adcl~L~vYkd~~dr~k~~~~KaslsL~~~~GlE~--g~~ldk~s~Tl 82 (224)
T 3ml4_A 9 ALVEGQVKLRD----GKKWKSRWLVLRKPSPVADCLLMLVYKDKCERSKGLRERSSLTLEDICGLEP--ALPYEGLAHTL 82 (224)
T ss_dssp CSEEEEEEEC-------CCEEEEEEEECSSTTSSCEEEEEESSSHHHHSCCCCSEEEEECCEEEEEE--EEEETTEEEEE
T ss_pred eeEEEeeeeec----CCceeeEEEEEEcCCCchheEEEEEEcChhhhhcCCcccceeehHHhcCccc--cccccCcccEE
Confidence 67899554433 25899999999973 3788999876422222224455555432211 11223344444
Q ss_pred EEEecCCCCceeEEEecchhhHHHHHHHHHhhhc
Q 002835 157 VLFPDGRDGRAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 157 vI~~~~~dgrty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
.|+.. ..+++|.+++++.+..|-..|.....
T Consensus 83 AIIc~---d~~~vLAFds~e~l~~W~~~l~~slG 113 (224)
T 3ml4_A 83 AIICL---SQAVMLGFDSHEAMCAWDTRIRYALG 113 (224)
T ss_dssp EEEES---SCEEEEECSSHHHHHHHHHHHHHHTS
T ss_pred EEEec---CcEEEEEeCCHHHHHHHHHHHhhccC
Confidence 45543 46789999999999999999997664
No 92
>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=96.80 E-value=0.0039 Score=59.83 Aligned_cols=85 Identities=13% Similarity=0.289 Sum_probs=60.9
Q ss_pred eeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecCCCCceeEEEecchhhHHHHH
Q 002835 103 KKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWK 182 (875)
Q Consensus 103 kKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~~dgrty~fQAdSEeE~~eWI 182 (875)
+.|||+|=.+.|.|.+..... ....-.-.+++.++.+.... +....+++|.|+.. ....+.|.|.+.+|++.||
T Consensus 45 ~eR~l~LF~~~Ll~~s~~~~~-~~f~~kgklPL~g~~V~~~e---d~~~~~~aFeI~g~--~~~~i~v~~~s~eE~~~Wl 118 (132)
T 1v61_A 45 EERYFLLFSSVLIMLSASPRM-SGFMYQGKIPIAGMVVNRLD---EIEGSDCMFEITGS--TVERIVVHCNNNQDFQEWM 118 (132)
T ss_dssp CEEEEEECSSCEEEEECSSSS-SCCEEEEEECTTTCBCSTTC---SSSSSCCCEEEECS--SSCEEEECCCCSHHHHHHH
T ss_pred eEEEEEEcCCeEEEEEecCCC-ceEEEEEEEecceeEEEecc---ccccCccEEEEecC--CCceEEEEeCCHHHHHHHH
Confidence 678999999999888854321 00001123667777766532 22457889999853 3478999999999999999
Q ss_pred HHHHhhhccCC
Q 002835 183 TALENALAQAP 193 (875)
Q Consensus 183 ~AI~~ai~~aP 193 (875)
.+|..++..+|
T Consensus 119 ~~L~~~i~~~~ 129 (132)
T 1v61_A 119 EQLNRLTKSGP 129 (132)
T ss_dssp HHHHHHHTTSC
T ss_pred HHHHHHHhhcc
Confidence 99999997666
No 93
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A
Probab=96.78 E-value=0.0054 Score=67.52 Aligned_cols=101 Identities=16% Similarity=0.245 Sum_probs=67.3
Q ss_pred cEEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCC--C------------ccceeecCCeeecCCCceee
Q 002835 83 AVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQK--G------------SEVNLTLGGIDLNNSGSVVV 148 (875)
Q Consensus 83 ~v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~--g------------~e~~i~L~~~~l~~s~sv~~ 148 (875)
..+++|.|.+...+ ..|+.|||.|=.+.|+|.+.......-+ + ....+.+..+.+...
T Consensus 258 ~li~eG~l~~~~~~---~~~~~~~~fLF~d~Ll~~k~k~~k~~~k~~~~~~~~~~~~k~~~~~~i~l~~~~v~e~----- 329 (377)
T 3p6a_A 258 KLVHEGPLTWRVTK---DKAVEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTREV----- 329 (377)
T ss_dssp CEEEEEEEEEESSS---SCEEEEEEEEESSEEEEEEEETTEEECCCCCCC---------CSCSEEEGGGEEEEEC-----
T ss_pred eEEEECCcEEEecC---CCeEEEEEEeeCCEEEEEEEcCceeEEeecccccccCccccCCCCCeEechhhhcccc-----
Confidence 48999988554322 3689999999999999988543210000 0 001244555544432
Q ss_pred ecCCcceEEEEecCCCCceeEEEecchhhHHHHHHHHHhhhcc
Q 002835 149 KADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQ 191 (875)
Q Consensus 149 ~~~KK~~FvI~~~~~dgrty~fQAdSEeE~~eWI~AI~~ai~~ 191 (875)
..+.+.+|.+.........|.|+|.|.++++.|+..|+.++..
T Consensus 330 ~~~~~~~~~i~~~~~~~~~~~l~A~s~~ek~~W~~~I~~ai~~ 372 (377)
T 3p6a_A 330 ATDHKAFYVLFTWDQEAQIYELVAQTVSERKNWCALITETAGS 372 (377)
T ss_dssp TTCTTEEEEEETTCTTCCEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred ccccceeEEEecCCCCCeeEEEecCCHHHHHHHHHHHHHHHHh
Confidence 2345566776654345578999999999999999999999964
No 94
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A
Probab=96.76 E-value=0.0045 Score=72.08 Aligned_cols=106 Identities=15% Similarity=0.235 Sum_probs=67.7
Q ss_pred CcEEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCC--------c------cceeecCCeeecCCCcee
Q 002835 82 NAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKG--------S------EVNLTLGGIDLNNSGSVV 147 (875)
Q Consensus 82 ~~v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g--------~------e~~i~L~~~~l~~s~sv~ 147 (875)
...+++|.|.+...+ ..|+.|||.|-.+.|+|.+...+...-+. . ...+.+..+.+...
T Consensus 410 R~LI~eG~l~~~~~~---~k~~~r~~fLF~D~LL~~k~k~~ky~~k~~~~~~~~~~d~k~~~~~~i~L~~l~v~e~---- 482 (536)
T 3odw_A 410 KKLVHEGPLTWRVTK---DKAVEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTREV---- 482 (536)
T ss_dssp SCEEEEEEEEEESCC------CEEEEEEESSEEEEEEEETTEEECCCC------------CCCSEEEGGGEEEEEC----
T ss_pred ceeeeecceEEEecC---CCeeEEEEEEcCCEEEEEEEcCCeEEEeecccccccccccccccCceeecccceeecc----
Confidence 348999988654422 36899999999999999875432110000 0 01255555555432
Q ss_pred eecCCcceEEEEecCCCCceeEEEecchhhHHHHHHHHHhhhccCCCC
Q 002835 148 VKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQAPST 195 (875)
Q Consensus 148 ~~~~KK~~FvI~~~~~dgrty~fQAdSEeE~~eWI~AI~~ai~~aP~~ 195 (875)
..+.+.+|.+.........|.|+|.|.+|++.|+.+|+.+|..+..+
T Consensus 483 -~~d~~~ffli~~~~~~~~~~~L~A~S~eEK~~W~~~I~~aI~~~~~~ 529 (536)
T 3odw_A 483 -ATDHKAFYVLFTWDQEAQIYELVAQTVSERKNWCALITETAGSLKVP 529 (536)
T ss_dssp -TTCTTEEEEEEC---CCCEEEEECSSHHHHHHHHHHHHHHHHTSCCC
T ss_pred -cccCCceEEEecCCCCceEEEEECCCHHHHHHHHHHHHHHHHhCCCc
Confidence 23455556665433456789999999999999999999999765543
No 95
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens}
Probab=96.72 E-value=0.0065 Score=67.95 Aligned_cols=103 Identities=18% Similarity=0.230 Sum_probs=65.6
Q ss_pred CcEEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCC--------C--Cc----cceeecCCeeecCCCcee
Q 002835 82 NAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQ--------K--GS----EVNLTLGGIDLNNSGSVV 147 (875)
Q Consensus 82 ~~v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~--------~--g~----e~~i~L~~~~l~~s~sv~ 147 (875)
...+++|.|.+...+ ..|+.|||.|-.+.|+|.+...+.... + .. ...+.+..+.+...
T Consensus 293 r~li~eG~l~~~~~~---~~~~~~~~fLF~d~Ll~~k~~~~k~~~~~~~~~~~~~~~~~~~~k~~i~l~~~~v~~~---- 365 (418)
T 3t06_A 293 RKMIHEGPLTWRISK---DKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIRSV---- 365 (418)
T ss_dssp SCEEEEEEEEECCBT---TBCCEEEEEEESSEEEEEEECSSCEECCC-------------CCCSEEEGGGEEEEEC----
T ss_pred ceeEEeceEEEEeCC---CCeEEEEEEecCCEEEEEEEcCCceEEeecccccccCCCcccccCCceechhceeccc----
Confidence 348999988754422 368999999999999998854321100 0 00 01345555555532
Q ss_pred eecCCcceEEEEecCCC--CceeEEEecchhhHHHHHHHHHhhhccCC
Q 002835 148 VKADKKLLTVLFPDGRD--GRAFTLKAESLEDLYDWKTALENALAQAP 193 (875)
Q Consensus 148 ~~~~KK~~FvI~~~~~d--grty~fQAdSEeE~~eWI~AI~~ai~~aP 193 (875)
..+.+ .|.+...... ...|+|+|.|.+++..|+.+|+.++..++
T Consensus 366 -~~~~~-~f~l~~~~~~~~~~~~~l~A~s~~ek~~W~~~I~~a~~~~~ 411 (418)
T 3t06_A 366 -ATDKR-AFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVRNAH 411 (418)
T ss_dssp -SSCSS-EEEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHHTC-
T ss_pred -cccCc-eEEEEecCCCCCceEEEEEcCCHHHHHHHHHHHHHHHhcCc
Confidence 12333 3444443222 26899999999999999999999996543
No 96
>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase, GTP-binding protein,, signaling protein; HET: GNP; 2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*
Probab=96.47 E-value=0.015 Score=54.08 Aligned_cols=96 Identities=16% Similarity=0.118 Sum_probs=61.1
Q ss_pred cEEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccce----eecCCeeecCCCceeeecCCcceEEE
Q 002835 83 AVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVN----LTLGGIDLNNSGSVVVKADKKLLTVL 158 (875)
Q Consensus 83 ~v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~----i~L~~~~l~~s~sv~~~~~KK~~FvI 158 (875)
-++++|.|....... .+.=+++||.|=++.|+|.+-.... .+. +. +.|..+.+... .+...-+.+|.|
T Consensus 7 ~lv~eG~l~el~~~~-~k~~~~v~~FLfND~Ll~a~~~~~~---~~~-~~~~~~~~L~~~~v~d~---~d~~~~~n~f~i 78 (113)
T 1zc3_B 7 YLVYNGDLVEYEADH-MAQLQRVHGFLMNDCLLVATWLPQR---RGM-YRYNALYPLDRLAVVNV---KDNPPMKDMFKL 78 (113)
T ss_dssp CEEEEEEEEEEETTT-CCEEEEEEEEEESSEEEEEEEECCT---TSC-EEEEEEEETTTCEEEEE---CCBTTBSSEEEE
T ss_pred EEEEeCcEEEEcccc-CCCCccEEEEecCCEEEEEEEeccC---ccc-EEEEEEEEcccCEEEEC---CCCcccceEEEE
Confidence 388999877544321 1222457888888999887753321 111 11 23333333221 112345778888
Q ss_pred EecCCCCceeEEEecchhhHHHHHHHHHhhh
Q 002835 159 FPDGRDGRAFTLKAESLEDLYDWKTALENAL 189 (875)
Q Consensus 159 ~~~~~dgrty~fQAdSEeE~~eWI~AI~~ai 189 (875)
... .++|+|+|++.+|..+|+.+|+.++
T Consensus 79 ~~~---~~s~~~~aes~~eK~~Wl~~~~~a~ 106 (113)
T 1zc3_B 79 LMF---PESRIFQAENAKIKREWLEVLEETK 106 (113)
T ss_dssp EET---TEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred EeC---CceEEEEcCCHHHHHHHHHHHHHHH
Confidence 754 5789999999999999999999987
No 97
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=96.30 E-value=0.009 Score=67.06 Aligned_cols=96 Identities=16% Similarity=0.251 Sum_probs=62.0
Q ss_pred cEEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecC
Q 002835 83 AVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDG 162 (875)
Q Consensus 83 ~v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~ 162 (875)
..+++|.|.+... +.|+.|||.|-.+.|+|.|..+..... -...+.+..+.+... .....+++|.|...
T Consensus 243 ~li~~g~l~~~~~----~~~~~r~~fLF~d~Ll~~k~~~~~~y~--~k~~i~L~~l~v~~~----~~~~~~~~f~i~~~- 311 (434)
T 3mpx_A 243 EFLKEGTLMKVTG----KNRRPRHLFLMNDVLLYTYPQKDGKYR--LKNTLAVANMKVSRP----VMEKVPYALKIETS- 311 (434)
T ss_dssp CEEECCEEEEEET----TEEEEEEEEEESSEEEEEEECTTSCEE--EEEEEEC-----CCC----CCTTSCSEEEEECS-
T ss_pred ceEecceEEEEeC----CCceEEEEEEECCEEEEEEecCCCeEE--EEEEEEcCCcEEEec----CCCCCCeeEEEecC-
Confidence 3799998876542 357899999999999999854322100 011244455544321 12345677887643
Q ss_pred CCCceeEEEecchhhHHHHHHHHHhhhcc
Q 002835 163 RDGRAFTLKAESLEDLYDWKTALENALAQ 191 (875)
Q Consensus 163 ~dgrty~fQAdSEeE~~eWI~AI~~ai~~ 191 (875)
.+.|+|+|.|++++..|+.+|..++..
T Consensus 312 --~~~~~l~a~s~~ek~~W~~~i~~ai~e 338 (434)
T 3mpx_A 312 --ESCLMLSASSCAERDEWYGCLSRALPE 338 (434)
T ss_dssp --SCEEEEECSSHHHHHHHHHHHHHC---
T ss_pred --CeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999953
No 98
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A*
Probab=96.11 E-value=0.027 Score=61.71 Aligned_cols=100 Identities=18% Similarity=0.214 Sum_probs=62.7
Q ss_pred cEEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCC------C--CCC--c----cceeecCCeeecCCCceee
Q 002835 83 AVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAI------P--QKG--S----EVNLTLGGIDLNNSGSVVV 148 (875)
Q Consensus 83 ~v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~------p--~~g--~----e~~i~L~~~~l~~s~sv~~ 148 (875)
..+++|.|.+... .+.|+.|||.|=.+.|+|.+...+.. . .+. . ...+.+..+.+...
T Consensus 252 ~li~~G~l~~~~~---~~~~~~~~~fLF~d~Ll~~k~~~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~v~~~----- 323 (368)
T 1xcg_A 252 KMIHEGPLTWRIS---KDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIRSV----- 323 (368)
T ss_dssp CEEEEEEEEECCS---SSCCCEEEEEEESSEEEEEEECSSCEECCC-------------CCCSEEEGGGEEEEEC-----
T ss_pred eEEeecceEeeec---CCCeeEEEEEcccccHHHhhcccccceeeeccccccCCCCcccCcCCceEccceeeecc-----
Confidence 4899998764321 24689999999999999987543210 0 000 0 11244444444321
Q ss_pred ecCCcceEEEEecCCC--CceeEEEecchhhHHHHHHHHHhhhcc
Q 002835 149 KADKKLLTVLFPDGRD--GRAFTLKAESLEDLYDWKTALENALAQ 191 (875)
Q Consensus 149 ~~~KK~~FvI~~~~~d--grty~fQAdSEeE~~eWI~AI~~ai~~ 191 (875)
..++ .+|.+...... ...|+|+|.|+++++.|+.+|..++.+
T Consensus 324 ~~~~-~~f~i~~~~~~g~~~~~~l~a~s~~ek~~W~~~i~~ai~~ 367 (368)
T 1xcg_A 324 ATDK-RAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVRN 367 (368)
T ss_dssp SSCS-SEEEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred cCCC-ceEEEEEecCCCCceEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 1233 34554443221 368999999999999999999999853
No 99
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Probab=96.00 E-value=0.025 Score=62.53 Aligned_cols=101 Identities=16% Similarity=0.250 Sum_probs=65.0
Q ss_pred cEEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCC----------CCCc----cceeecCCeeecCCCceee
Q 002835 83 AVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIP----------QKGS----EVNLTLGGIDLNNSGSVVV 148 (875)
Q Consensus 83 ~v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p----------~~g~----e~~i~L~~~~l~~s~sv~~ 148 (875)
..+++|.|.+...+ ..|+.|||.|-.+.|+|.+...+... ...+ ...+.+..+.+...
T Consensus 256 ~li~eG~l~~~~~~---~~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~v~~~----- 327 (385)
T 1txd_A 256 KMIHEGPLVWKVNR---DKTIDLYTLLLEDILVLLQKQDDRLVLRCHSKILASTADSKHTFSPVIKLSTVLVRQV----- 327 (385)
T ss_dssp CEEEEEEEEEESSS---SCBCCEEEEEESSEEEEEEEETTEEECCC-------------CCCSEEEGGGEEEEEC-----
T ss_pred eEEEECcEEEEcCC---CCeEEEEEEecCCeeEEEEecCCeeEEeeccccccccCCCCcCCCCceeccccccccc-----
Confidence 48999988654322 46899999999999999875332100 0000 01234444444321
Q ss_pred ecCCcceEEEEecCCCCceeEEEecchhhHHHHHHHHHhhhcc
Q 002835 149 KADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQ 191 (875)
Q Consensus 149 ~~~KK~~FvI~~~~~dgrty~fQAdSEeE~~eWI~AI~~ai~~ 191 (875)
..+.+.+|.+.........|+|+|.|.++++.|+.+|..++..
T Consensus 328 ~~d~~~~f~i~~~~~~~~~~~l~a~s~~ek~~W~~~i~~~i~~ 370 (385)
T 1txd_A 328 ATDNKALFVISMSDNGAQIYELVAQTVSEKTVWQDLICRMAAS 370 (385)
T ss_dssp CC-CCEEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred ccCCceEEEEEEcCCCceEEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 1244566777654334578999999999999999999999854
No 100
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A
Probab=95.81 E-value=0.031 Score=61.06 Aligned_cols=97 Identities=16% Similarity=0.229 Sum_probs=64.4
Q ss_pred cEEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCC-C--CCccc----eeecCCeeecCCCceeeecCCcce
Q 002835 83 AVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIP-Q--KGSEV----NLTLGGIDLNNSGSVVVKADKKLL 155 (875)
Q Consensus 83 ~v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p-~--~g~e~----~i~L~~~~l~~s~sv~~~~~KK~~ 155 (875)
..+++|.|.+. | .|+.|||.|=.+.|+|.|....... . .+..+ .+.+..+.+.... +...-+++
T Consensus 246 ~li~eG~l~~~--g----~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~y~~k~~i~l~~~~v~~~~---d~~~~~~~ 316 (354)
T 1dbh_A 246 EFIMEGTLTRV--G----AKHERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQINDKD---DTNEYKHA 316 (354)
T ss_dssp CEEEEEEEEET--T----CSSCEEEEEESSEEEEEEECTTCCCCTTSCCCSEEEEEEEESCSCEEEECC---CSSSCCSE
T ss_pred eEEEEeeEEEE--e----cCceEEEEEeCCEEEEEecCCCCCCCCCCCCcceeEEEEEeccceEEEeCC---cccccCcc
Confidence 48999977665 2 5789999999999999886532100 0 11111 2344444443211 11233577
Q ss_pred EEEEecCCCCceeEEEecchhhHHHHHHHHHhhhc
Q 002835 156 TVLFPDGRDGRAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 156 FvI~~~~~dgrty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
|.|... ++..|+|+|.|++++..|+.+|..+..
T Consensus 317 F~i~~~--~~~~~~l~a~s~~ek~~W~~~i~~~~~ 349 (354)
T 1dbh_A 317 FEIILK--DENSVIFSAKSAEEKNNWMAALISLQY 349 (354)
T ss_dssp EEECCT--TSCCEEEECSSHHHHHHHHHHHHHHHT
T ss_pred EEEecC--CCCEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 887654 257899999999999999999999874
No 101
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Probab=95.57 E-value=0.064 Score=60.85 Aligned_cols=106 Identities=17% Similarity=0.167 Sum_probs=66.0
Q ss_pred cEEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceee---ecCCcceEEEE
Q 002835 83 AVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVV---KADKKLLTVLF 159 (875)
Q Consensus 83 ~v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~---~~~KK~~FvI~ 159 (875)
..+++|.|.+..... ..++.|||.|-.+.|+|.|..........-...+.+..+.+.....-.. ...-+++|.|.
T Consensus 333 ~li~~G~l~~~~~~~--~~~~~r~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~~~~~~~~~~~~F~i~ 410 (466)
T 2pz1_A 333 ELIYSGELTRVTQPQ--AKSQQRMFFLFDHQLIYCKKDLLRRDVLYYKGRLDMDGLEVVDLEDGKDRDLHVSIKNAFRLH 410 (466)
T ss_dssp CEEEEEEEEEECTTT--CCEEEEEEEEETTEEEEEEECSSCTTCEEEEEEEETTTCEEEECCSBSCCSSCCCBCEEEEEE
T ss_pred eeEEeeeEEEEecCC--CCeeEEEEEEECCEEEEEEeccccCCceEEeeeeeccceEEEeCCCCcccccccccceeEEEE
Confidence 489999887654322 3578999999999999998543211100000124444444432210000 00124678777
Q ss_pred ecCCCCceeEEEecchhhHHHHHHHHHhhhcc
Q 002835 160 PDGRDGRAFTLKAESLEDLYDWKTALENALAQ 191 (875)
Q Consensus 160 ~~~~dgrty~fQAdSEeE~~eWI~AI~~ai~~ 191 (875)
... .+..|+|+|.|.++...|+.+|..++..
T Consensus 411 ~~~-~~~~~~l~a~s~~eK~~W~~~i~~a~~~ 441 (466)
T 2pz1_A 411 RGA-TGDSHLLCTRKPEQKQRWLKAFAREREQ 441 (466)
T ss_dssp CSS-SCCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred eCC-CCeEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 542 2568999999999999999999998853
No 102
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Probab=95.46 E-value=0.069 Score=57.30 Aligned_cols=100 Identities=16% Similarity=0.197 Sum_probs=65.1
Q ss_pred EEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccc----eeecCCeeecCCCceeeecCCcceEEEE
Q 002835 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEV----NLTLGGIDLNNSGSVVVKADKKLLTVLF 159 (875)
Q Consensus 84 v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~----~i~L~~~~l~~s~sv~~~~~KK~~FvI~ 159 (875)
.+++|.+.+...+...+.++.|||.|=.+.|+|.|..+... +...+ .+.+..+.+... .....++|.+.
T Consensus 203 li~~~~~~~~~~~~~~~~~~~r~~fLF~d~Ll~~k~~~~~~--~~~~y~~k~~i~l~~~~v~e~-----~~~~~~~F~i~ 275 (311)
T 1nty_A 203 LILQESFQVWDPKTLIRKGRERHLFLFEMSLVFSKEVKDSS--GRSKYLYKSKLFTSELGVTEH-----VEGDPCKFALW 275 (311)
T ss_dssp EEEEEEEEEECSSSSSCCEEEEEEEEESSEEEEEEEEECTT--CCEEEEEEEEEEGGGEEEECC-----CTTCTTEEEEE
T ss_pred ceeeeeEEEEcCcccccccceeEEEeccCeEEEEEeeccCC--CCceeEEeeeeeccceeeEEc-----cCCCCceEEEE
Confidence 67778766554333345679999999999999987543210 11111 133444444321 12345678877
Q ss_pred ecC--CCCceeEEEecchhhHHHHHHHHHhhhc
Q 002835 160 PDG--RDGRAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 160 ~~~--~dgrty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
... ..+..|+|+|.|++++..|+.+|..++.
T Consensus 276 ~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~~i~ 308 (311)
T 1nty_A 276 VGRTPTSDNKIVLKASSIENKQDWIKHIREVIQ 308 (311)
T ss_dssp ESSSCCTTTCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred eCCCCCCCceEEEECCCHHHHHHHHHHHHHHHh
Confidence 621 1346799999999999999999999985
No 103
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1
Probab=95.46 E-value=0.092 Score=58.60 Aligned_cols=105 Identities=12% Similarity=0.086 Sum_probs=65.9
Q ss_pred cEEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceee---ecCCcceEEEE
Q 002835 83 AVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVV---KADKKLLTVLF 159 (875)
Q Consensus 83 ~v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~---~~~KK~~FvI~ 159 (875)
..+++|.|.+..... ..++.|||.|-++.|+|.|..........-...+.+..+.+.....-.. ...-+++|.|.
T Consensus 256 ~Li~~G~l~~~~~~~--~k~~~r~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~~~~~~~~~~~~F~i~ 333 (402)
T 2dfk_A 256 ELIYTGEMAWIYQPY--GRNQQRVFFLFDHQMVLCKKDLIRRDILYYKGRIDMDKYEVIDIEDGRDDDFNVSMKNAFKLH 333 (402)
T ss_dssp CEEEEEEEEEESSTT--CCCEEEEEEEETTEEEEEEECSSCTTCEEEEEEEEGGGEEEEECCSEECSSSCCEESSEEEEE
T ss_pred ceEEeceEEEEeccC--CceEEEEEEeeCCEEEEEEeccccCCceEEeeeeeccceEEEecCCCCccccccccceeEEEE
Confidence 489999887654322 3578999999999999998543211100000124455554443211000 00124578877
Q ss_pred ecCCCCceeEEEecchhhHHHHHHHHHhhhc
Q 002835 160 PDGRDGRAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 160 ~~~~dgrty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
... .+..|+|+|.|+++...|+.+|..++.
T Consensus 334 ~~~-~~~~~~l~a~s~~eK~~Wi~~i~~a~~ 363 (402)
T 2dfk_A 334 NKE-TEEVHLFFAKKLEEKIRWLRAFREERK 363 (402)
T ss_dssp ESS-SSCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred ECC-CCeEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 543 246899999999999999999999874
No 104
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A
Probab=95.46 E-value=0.073 Score=58.34 Aligned_cols=102 Identities=14% Similarity=0.259 Sum_probs=65.6
Q ss_pred cEEEEeeeEeec---CCC------CccCceeEEEEEeCCeEEEecCCCCCCC--CCCccc----eeecCCeeecCCCcee
Q 002835 83 AVFKSGPLFISS---KGI------GWTSWKKRWFILTHTSLVFFRSDPSAIP--QKGSEV----NLTLGGIDLNNSGSVV 147 (875)
Q Consensus 83 ~v~KEGyL~k~k---Kg~------~~ksWkKRWfVL~~~sL~yYKd~k~~~p--~~g~e~----~i~L~~~~l~~s~sv~ 147 (875)
..+++|.|.+.. +|. ....++.|||.|=.+.|+|.|....... .....+ .+.+..+.+...
T Consensus 209 ~ll~~g~l~~~~~~~~g~~~~k~~~~~k~~~r~~fLF~d~Ll~~k~~~~~~~~~~~~~~y~~k~~i~l~~~~v~e~---- 284 (353)
T 1kz7_A 209 KLLMQGSFSVWTDHKKGHTKVKELARFKPMQRHLFLHEKAVLFCKKREENGEGYEKAPSYSYKQSLNMTAVGITEN---- 284 (353)
T ss_dssp CEEEEEEEEEEECCCCC-----CCCSSSCEEEEEEEESSEEEEEEEECCCCSSCCCSCEEEEEEEEEGGGEEEECC----
T ss_pred hhheecceEEEecCccccchhhhhhccCcceeEEEEECCEEEEEEeccccccCCCCCCeEEEEEEeEcccceeeEc----
Confidence 378999887542 221 0235789999999999999886542110 011111 133444444321
Q ss_pred eecCCcceEEEEecCCCCceeEEEecchhhHHHHHHHHHhhhc
Q 002835 148 VKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 148 ~~~~KK~~FvI~~~~~dgrty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
..+..++|.|...++ ...|+|+|.|++++..|+.+|..++.
T Consensus 285 -~~~~~~~F~i~~~~~-~~~~~l~a~s~~ek~~W~~~i~~ai~ 325 (353)
T 1kz7_A 285 -VKGDTKKFEIWYNAR-EEVYIIQAPTPEIKAAWVNAIRKVLT 325 (353)
T ss_dssp -BTTBTTEEEEEETTT-TEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred -CCCCCceEEEEECCC-CcEEEEECCCHHHHHHHHHHHHHHHH
Confidence 123456788876533 46899999999999999999999884
No 105
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}
Probab=95.02 E-value=0.088 Score=57.72 Aligned_cols=101 Identities=11% Similarity=0.182 Sum_probs=63.9
Q ss_pred EEEEeeeEeecCCC---CccCceeEEEEEeCCeEEEecCCCCCCCCCC--ccc----eeecCCeeecCCCceeeecCCcc
Q 002835 84 VFKSGPLFISSKGI---GWTSWKKRWFILTHTSLVFFRSDPSAIPQKG--SEV----NLTLGGIDLNNSGSVVVKADKKL 154 (875)
Q Consensus 84 v~KEGyL~k~kKg~---~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g--~e~----~i~L~~~~l~~s~sv~~~~~KK~ 154 (875)
.+++|.+++..... ..+.++.|||.|=.+.|+|.|..+.... ++ ..+ .+.+..+.+... ..+..+
T Consensus 207 Ll~~g~~~v~~~~~~~~~~~~~~~r~~fLF~d~Ll~~k~~~~~~~-~~~~~~y~~k~~i~l~~~~v~~~-----~~~~~~ 280 (354)
T 2rgn_B 207 LLGQDTFWVTEPEAGGLLSSRGRERRVFLFEQIIIFSEALGGGVR-GGTQPGYVYKNSIKVSCLGLEGN-----LQGDPC 280 (354)
T ss_dssp EEEEEEEEEECC-------CCCCEEEEEEESSEEEEEEECC---------CCEEEEEEEEGGGEEEEES-----GGGCTT
T ss_pred ccccceEEEEcCCcCccccCCCceEEEEEeCCcEEEEEeccCCCC-CCCCCceEEcceeeccceeeeec-----cCCCCc
Confidence 67888877654211 2356899999999999999886542110 00 011 133444444321 123456
Q ss_pred eEEEEecCCC--CceeEEEecchhhHHHHHHHHHhhhc
Q 002835 155 LTVLFPDGRD--GRAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 155 ~FvI~~~~~d--grty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
.|.|....+. ...|+|+|.|.+++..|+.+|..++.
T Consensus 281 ~F~i~~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai~ 318 (354)
T 2rgn_B 281 RFALTSRGPEGGIQRYVLQAADPAISQAWIKHVAQILE 318 (354)
T ss_dssp EEEEEEECSSSCEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred eEEEEecCCCCCceEEEEECCCHHHHHHHHHHHHHHHH
Confidence 7888764432 36899999999999999999999884
No 106
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=94.85 E-value=0.11 Score=57.87 Aligned_cols=102 Identities=17% Similarity=0.202 Sum_probs=64.9
Q ss_pred EEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCcee-eecCCcceEEEEecC
Q 002835 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVV-VKADKKLLTVLFPDG 162 (875)
Q Consensus 84 v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~-~~~~KK~~FvI~~~~ 162 (875)
.+++|.|.+..... +.|+.||+.|=.+.|+|.|....... -...+.+..+.+.....-. ....-.+.|.|...
T Consensus 234 li~~G~l~~~~~~~--~~~~~~~~fLF~d~Ll~~k~k~~~y~---~k~~i~l~~~~v~~~~~~~~~~~~~~~~F~i~~~- 307 (406)
T 2vrw_B 234 PKIDGELKITSVER--RSKTDRYAFLLDKALLICKRRGDSYD---LKASVNLHSFQVRDDSSGERDNKKWSHMFLLIED- 307 (406)
T ss_dssp EEEEEEEEEECSSC--CSCEEEEEEEESSEEEEEEEETTEEE---EEEEEETTTEEEEC--------CTTCEEEEEEET-
T ss_pred ccccccEEEEecCC--CccceEEEEecCCEEEEEEecCCceE---EEEEecccceeeeecCCCCccCCccceeeEEEec-
Confidence 68999887654322 56899999999999999885421100 0012445555554321100 00112466777653
Q ss_pred CCCceeEEEecchhhHHHHHHHHHhhhcc
Q 002835 163 RDGRAFTLKAESLEDLYDWKTALENALAQ 191 (875)
Q Consensus 163 ~dgrty~fQAdSEeE~~eWI~AI~~ai~~ 191 (875)
.....|+|+|.|++++..|+.+|..++..
T Consensus 308 ~~~~~~~l~a~s~~ek~~W~~~i~~ai~~ 336 (406)
T 2vrw_B 308 QGAQGYELFFKTRELKKKWMEQFEMAISN 336 (406)
T ss_dssp TCSCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEeCCCHHHHHHHHHHHHHHHhh
Confidence 23568999999999999999999999854
No 107
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=94.82 E-value=0.14 Score=62.13 Aligned_cols=99 Identities=26% Similarity=0.422 Sum_probs=67.4
Q ss_pred EEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEecCC
Q 002835 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDGR 163 (875)
Q Consensus 84 v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~~ 163 (875)
+++.|||-+...+.....=+.+||||+..+|.+||++.+.. ..+.+.+.+..++.... --..+++.|.++-...
T Consensus 540 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 613 (772)
T 3zvr_A 540 VIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKE----KKYMLSVDNLKLRDVEK--GFMSSKHIFALFNTEQ 613 (772)
T ss_dssp EEEEEEEEESSSCCC---CCEEEEEEESSEEEEESSTTCCC----EEEEEECTTEEEEEC---------CEEEEEEETTS
T ss_pred ceeeeeeeecccccccCCCccceeeccccccccccchhhhc----ccccccccccccchhhh--ccccccccccccCCcc
Confidence 89999999877666555668899999999999999965431 22556677776654321 0123667777665432
Q ss_pred -----CCceeEEEecchhhHHHHHHHHHhh
Q 002835 164 -----DGRAFTLKAESLEDLYDWKTALENA 188 (875)
Q Consensus 164 -----dgrty~fQAdSEeE~~eWI~AI~~a 188 (875)
+-+.+-|.|++.++...|...+-.|
T Consensus 614 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 643 (772)
T 3zvr_A 614 RNVYKDYRQLELACETQEEVDSWKASFLRA 643 (772)
T ss_dssp SCSBTTBSEEEEEESSHHHHHHHHHHHHHT
T ss_pred ccccchhhhhhhhccccccchhhHHhhhhc
Confidence 2357889999999999999987543
No 108
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=94.41 E-value=0.007 Score=69.12 Aligned_cols=97 Identities=15% Similarity=0.199 Sum_probs=0.0
Q ss_pred cEEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCC----------cc-----ceeecCCeeecCCCcee
Q 002835 83 AVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKG----------SE-----VNLTLGGIDLNNSGSVV 147 (875)
Q Consensus 83 ~v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g----------~e-----~~i~L~~~~l~~s~sv~ 147 (875)
..+++|.|.+. +.|+.|||.|-.+.|+|.+..+......+ .. ..+.+..+.+... .
T Consensus 252 ~li~eG~l~~~------~~~~~~~~fLF~d~Ll~~k~~~~~~~~~g~~~~f~~~~~~~~~v~k~~i~l~~~~v~~~---~ 322 (510)
T 3jzy_A 252 KLLHSGKLYKT------KSNKELHGFLFNDFLLLTYMVKQFAVSSGSEKLFSSKSNAQFKMYKTPIFLNEVLVKLP---T 322 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeEEeceEEEc------CCCcEEEEEcccceeEEeeecccccccCCcccccCcccccceeEEcCceehhheEEecc---C
Confidence 36778876643 35789999999999999884432200000 00 1133444443321 1
Q ss_pred eecCCcceEEEEecCCCCceeEEEecchhhHHHHHHHHHhhhcc
Q 002835 148 VKADKKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQ 191 (875)
Q Consensus 148 ~~~~KK~~FvI~~~~~dgrty~fQAdSEeE~~eWI~AI~~ai~~ 191 (875)
+....+++|.|... .++|+|+|.|.+++..|+.+|..++..
T Consensus 323 d~~~~~~~F~i~~~---~~~~~l~a~s~~ek~~W~~~i~~ai~~ 363 (510)
T 3jzy_A 323 DPSSDEPVFHISHI---DRVYTLRTDNINERTAWVQKIKAASEQ 363 (510)
T ss_dssp --------------------------------------------
T ss_pred CCCccccceeeecc---ceeEEeccCCHHHHHHHHHHHHHHHHH
Confidence 12345678888765 568999999999999999999998854
No 109
>1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1
Probab=94.36 E-value=0.15 Score=48.16 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=32.5
Q ss_pred CcceEEEEecCCCCceeEEEecchhhHHHHHHHHHhhhcc
Q 002835 152 KKLLTVLFPDGRDGRAFTLKAESLEDLYDWKTALENALAQ 191 (875)
Q Consensus 152 KK~~FvI~~~~~dgrty~fQAdSEeE~~eWI~AI~~ai~~ 191 (875)
..+||.|+.... -+++.|.|+|+++++.|+..|+..+..
T Consensus 84 ~~~~FsIiy~~~-~k~LdlvA~s~~e~~~Wv~gL~~L~~~ 122 (131)
T 1mai_A 84 EDRCFSIVFKDQ-RNTLDLIAPSPADAQHWVQGLRKIIHH 122 (131)
T ss_dssp GGGEEEEEESSS-CCCEEEECSSHHHHHHHHHHHHHHHC-
T ss_pred ccceEEEEECCC-CceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 567899887632 478999999999999999999998853
No 110
>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural genomics, structural genomics consortium, SGC; 2.39A {Homo sapiens}
Probab=94.19 E-value=0.28 Score=47.43 Aligned_cols=102 Identities=14% Similarity=0.020 Sum_probs=62.9
Q ss_pred EEEEeeeEee--cCCCCccCceeEEEEEeCCeEEEecCCCCCC--CCCCccceeecCCeeecCCCceeeecCCcceEEEE
Q 002835 84 VFKSGPLFIS--SKGIGWTSWKKRWFILTHTSLVFFRSDPSAI--PQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLF 159 (875)
Q Consensus 84 v~KEGyL~k~--kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~--p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~ 159 (875)
.+..+-||-- -.+..++.=+.|||.|=++.|.|.|.-+... ....--..+.+.+..+... ....-.++|.|.
T Consensus 13 lvc~~~l~ev~d~~K~~~kg~qqR~~FLFND~LL~TK~~~kkk~~~~Y~vr~~~~L~gm~V~~~----e~e~~p~~~~l~ 88 (140)
T 3qwm_A 13 LVCYCRLFEVPDPNKPQKLGLHQREIFLFNDLLVVTKIFQKKKNSVTYSFRQSFSLYGMQVLLF----ENQYYPNGIRLT 88 (140)
T ss_dssp EEEEEEEEECSCTTSCCCTTTTEEEEEEESSCEEEEECCC---CCCCCCCEEEECCTTEEEEEE----CCSSCTTEEEEE
T ss_pred EEEEEeeeeeccCcccccccccceEEEEecchhhheeecccCCCCCceEEEEEeeecceEEEcc----cCCCCceEEEEE
Confidence 5677766532 1112234458999999999999987322110 1111112344555554332 223456777777
Q ss_pred ecCCCC----ceeEEEecchhhHHHHHHHHHhhhc
Q 002835 160 PDGRDG----RAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 160 ~~~~dg----rty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
... +| ++++|+|.+..|+..|+.+|+.+|.
T Consensus 89 s~~-~G~~~k~~i~~~A~s~~ER~rwi~dL~esI~ 122 (140)
T 3qwm_A 89 SSV-PGADIKVLINFNAPNPQDRKKFTDDLRESIA 122 (140)
T ss_dssp ECC-TTSCCEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred ecC-CCCcceEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 542 23 6899999999999999999999984
No 111
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=94.12 E-value=0.13 Score=60.42 Aligned_cols=102 Identities=17% Similarity=0.168 Sum_probs=64.4
Q ss_pred EEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCce-eeecCCcceEEEEecC
Q 002835 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSV-VVKADKKLLTVLFPDG 162 (875)
Q Consensus 84 v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv-~~~~~KK~~FvI~~~~ 162 (875)
.+++|.|.+.... .+.++.||+.|=.+.|+|.|....... -...+.+..+.+.....- .....-++.|.|....
T Consensus 406 ll~~G~l~~~~~~--~~~~~~r~~fLF~d~Ll~~k~~~~~y~---~k~~i~L~~~~v~~~~~~~~~~~~~~~~f~i~~~~ 480 (587)
T 3ky9_A 406 PKIDGELKITSVE--RRSKMDRYAFLLDKALLICKRRGDSYD---LKDFVNLHSFQVRDDSSGDRDNKKWSHMFLLIEDQ 480 (587)
T ss_dssp EEEEEEEEEECSS--CCSCEEEEEEEETTEEEEEEEETTEEE---EEEEEEGGGEEEEEC-----CCCTTCEEEEEEETT
T ss_pred eEEEeeEEEEecc--CCCcceEEEEEECCEEEEEEecCCEEE---eeeeechhhceeeecCCCCcccccccceeEEEEcC
Confidence 7899988765433 367899999999999999885522110 112244555555432100 0001133567777642
Q ss_pred CCCceeEEEecchhhHHHHHHHHHhhhcc
Q 002835 163 RDGRAFTLKAESLEDLYDWKTALENALAQ 191 (875)
Q Consensus 163 ~dgrty~fQAdSEeE~~eWI~AI~~ai~~ 191 (875)
..+.|+|+|.|.+++..|+.+|..++..
T Consensus 481 -~~~~~~L~A~S~eeK~~Wi~~I~~ai~~ 508 (587)
T 3ky9_A 481 -GAQGYELFFKTRELKKKWMEQFEMAISN 508 (587)
T ss_dssp -C---CEEEESSHHHHHHHHHHHHHHHHH
T ss_pred -CCceEEEEeCCHHHHHHHHHHHHHHhhh
Confidence 2368999999999999999999999854
No 112
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=93.98 E-value=0.27 Score=46.16 Aligned_cols=42 Identities=14% Similarity=0.259 Sum_probs=32.5
Q ss_pred hhcchHHHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHH
Q 002835 653 LEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALEN 694 (875)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~le~ 694 (875)
.|..-.+||.+|..-.+.||.|+..+..-+.++..+|.-.|.
T Consensus 18 ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~ 59 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQE 59 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 455667999999888899999999988877777666554443
No 113
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Probab=93.20 E-value=0.23 Score=53.86 Aligned_cols=100 Identities=14% Similarity=0.074 Sum_probs=60.3
Q ss_pred cEEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCC--ccceeecCCeeecCCCc--ee----------e
Q 002835 83 AVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKG--SEVNLTLGGIDLNNSGS--VV----------V 148 (875)
Q Consensus 83 ~v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g--~e~~i~L~~~~l~~s~s--v~----------~ 148 (875)
..+++|.|.+. + .+.|||.|=.+.|+|.|.......... -...+.+..+.+..... +. .
T Consensus 231 ~li~~G~l~~~--~-----~~~~~~fLF~d~Ll~~k~~~~~~~~~~~v~k~~i~l~~l~v~~~~d~~~~~~~s~~g~~~~ 303 (346)
T 2z0q_A 231 VLCCHGELKNN--R-----GVKLHVFLFQEVLVITRAVTHNEQLCYQLYRQPIPVKDLTLEDLQDGEVRLGGSLRGAFSN 303 (346)
T ss_dssp CEEEEEEEEET--T-----SCEEEEEEESSEEEEEEEEEETTEEEEEESSCCEEGGGCEEEECCTTTSCCCSCC--CCSH
T ss_pred EEEEeceeEEC--C-----CcEEEEEECCCcEEEEEEeccCCceeeeeecCCcchhhceeeecCCCccccCccccccccC
Confidence 47899977541 1 278999999999999875321100000 00113344444432210 00 0
Q ss_pred ecCCcceEEEEecC-CCCceeEEEecchhhHHHHHHHHHhhh
Q 002835 149 KADKKLLTVLFPDG-RDGRAFTLKAESLEDLYDWKTALENAL 189 (875)
Q Consensus 149 ~~~KK~~FvI~~~~-~dgrty~fQAdSEeE~~eWI~AI~~ai 189 (875)
....+++|.|.... ..+..|+|+|.|++++..|+.+|..++
T Consensus 304 ~~~~~~~F~i~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai 345 (346)
T 2z0q_A 304 NERVKNFFRVSFKNGSQSQTHSLQANDTFNKQQWLNCIRQAK 345 (346)
T ss_dssp HHHTSSEEEEEECCGGGCEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred CcccccceEEEEecCCCCceEEEEECCHHHHHHHHHHHHHhh
Confidence 01235678887532 236799999999999999999999886
No 114
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=91.64 E-value=0.44 Score=59.77 Aligned_cols=97 Identities=15% Similarity=0.189 Sum_probs=62.9
Q ss_pred cEEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCC-C--Ccc----ceeecCCeeecCCCceeeecCCcce
Q 002835 83 AVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQ-K--GSE----VNLTLGGIDLNNSGSVVVKADKKLL 155 (875)
Q Consensus 83 ~v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~-~--g~e----~~i~L~~~~l~~s~sv~~~~~KK~~ 155 (875)
..+++|.|.+..++ +.|||.|=.+.|+|.|..+..... + +.. ..+.+..+.+... .+...-+++
T Consensus 443 ~Li~eG~l~~~~~k------~~r~~FLF~D~Ll~~K~~~~~~~~~g~~~~~y~~k~~i~L~~l~V~~~---~d~~~~~~~ 513 (1049)
T 3ksy_A 443 EFIMEGTLTRVGAK------HERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQINDK---DDTNEYKHA 513 (1049)
T ss_dssp CCCCEEEEEETTCS------SCEEEEEETTEEEEEECCTTCCCCTTSCCCSCCCCCEECCSSCCCCCC---CCSSSCCSE
T ss_pred eEEEeceEEEEccC------ceEEEEeeCCeEEEEEecCccCCCCCCCCCceEEEEEEEcCceEEEEC---CCCccccce
Confidence 47899977654422 789999999999999866432111 1 001 1233444444322 112234567
Q ss_pred EEEEecCCCCceeEEEecchhhHHHHHHHHHhhhc
Q 002835 156 TVLFPDGRDGRAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 156 FvI~~~~~dgrty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
|.|... ++..|+|+|.|++++..|+.+|..+..
T Consensus 514 F~I~~~--~~~~~~L~A~S~eeK~~Wi~~I~~~q~ 546 (1049)
T 3ksy_A 514 FEIILK--DENSVIFSAKSAEEKNNWMAALISLQY 546 (1049)
T ss_dssp EEECCT--TSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred EEEEcC--CCCEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 777643 456899999999999999999987664
No 115
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=91.25 E-value=0.6 Score=58.73 Aligned_cols=100 Identities=21% Similarity=0.295 Sum_probs=40.9
Q ss_pred hhhhhhcchHHHHHHHHHhhhcchhHhhhHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHH
Q 002835 649 EIQRLEDTKSDLQRKIADEVKGNEILEASLESRKK------------------------ALHERRLALENDVARLKDQLQ 704 (875)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~r~~le~~v~~l~~ql~ 704 (875)
....||..-.+||.|+..+.+.|..||+.+..-++ ++...-..||++++.|+++++
T Consensus 922 ~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~ 1001 (1080)
T 2dfs_A 922 LHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELH 1001 (1080)
T ss_dssp -----------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888999998888888877765321111 222333456666666777766
Q ss_pred HHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHH-hhhhhhhhHHHHHHHHHHHHHHHH
Q 002835 705 KERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVEL-GEIAQAETDIINLKQKAKDLRVQL 762 (875)
Q Consensus 705 ~e~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~l-~~i~~~e~~v~~l~~~~~~l~~~l 762 (875)
+...-...||..... ++.+| +.|+.+|....+|+|++++|..++
T Consensus 1002 ~~~ke~~~lee~~~~--------------~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~ 1046 (1080)
T 2dfs_A 1002 QTQTEKKTIEEWADK--------------YKHETEQLVSELKEQNTLLKTEKEELNRRI 1046 (1080)
T ss_dssp HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666654422 22233 557778888888888888887433
No 116
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1
Probab=90.75 E-value=1.2 Score=48.83 Aligned_cols=105 Identities=13% Similarity=0.171 Sum_probs=58.5
Q ss_pred EEEEeeeEeecCCC---CccCceeEEEEEeCCeEEE-ecCCCCCCCC-C----------Ccc----ceeecCCeeecCCC
Q 002835 84 VFKSGPLFISSKGI---GWTSWKKRWFILTHTSLVF-FRSDPSAIPQ-K----------GSE----VNLTLGGIDLNNSG 144 (875)
Q Consensus 84 v~KEGyL~k~kKg~---~~ksWkKRWfVL~~~sL~y-YKd~k~~~p~-~----------g~e----~~i~L~~~~l~~s~ 144 (875)
.+.+|.+....... ..+..+.||+.|=.+.|+| +|........ + +.. ..+.+..+.+....
T Consensus 238 ll~~~~~~~~~~~~~~~~~~k~~~~~~fLF~d~lll~~k~~~~~k~~~~~~~~~s~~~~~~~y~~k~~i~l~~~~v~~~~ 317 (377)
T 1foe_A 238 LLLHTSVIWLNPPASLGKWKKEPELAAFVFKTAVVLVYKDGSKQKKKLVGSHRLSIYEEWDPFRFRHMIPTEALQVRALP 317 (377)
T ss_dssp EEEEEEEEESSCCHHHHTTCSSCEEEEEEETTEEEEEECCCCCSCCSSCCCTTTTCSSCSCSCCCEEEEEGGGEEEECCC
T ss_pred eeeecceeeccCchhhccccccceEEEEEcCCeEEEEeccccccccccccccccccccCCCceeEeeeccccceEEEecC
Confidence 56677554322110 1134567888888887776 4532111000 0 011 12455566554421
Q ss_pred ceeeecCCcceEEEEec-----CCCCceeEEEecchhhHHHHHHHHHhhhc
Q 002835 145 SVVVKADKKLLTVLFPD-----GRDGRAFTLKAESLEDLYDWKTALENALA 190 (875)
Q Consensus 145 sv~~~~~KK~~FvI~~~-----~~dgrty~fQAdSEeE~~eWI~AI~~ai~ 190 (875)
.. ..+.+..|.|... +...+.|+|+|.|.++...|+.+|..++.
T Consensus 318 ~~--~~~~~~~f~i~~~~~~~~~~~~~~~~l~A~s~~eK~~W~~~i~~~i~ 366 (377)
T 1foe_A 318 SA--DAEANAVCEIVHVKSESEGRPERVFHLCCSSPESRKDFLKSVHSILR 366 (377)
T ss_dssp CT--TTTSCCEEEEEECCBTGGGBCCEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CC--ccchhhHHHHHhccccccCCCcceEEEEeCCHHHHHHHHHHHHHHhh
Confidence 10 1122344665521 23357899999999999999999999984
No 117
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=89.73 E-value=0.98 Score=54.12 Aligned_cols=96 Identities=24% Similarity=0.374 Sum_probs=58.1
Q ss_pred CCcEEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCCCCCCccceeecCCeeecCCCceeeecCCcceEEEEe
Q 002835 81 GNAVFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFP 160 (875)
Q Consensus 81 ~~~v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~ 160 (875)
+..+++.||+.+.+ +.....|++|++.|..+.+.++-.... + . ..+.+..+.... ........++.+.
T Consensus 556 ~~~~i~~G~~~k~~-g~f~~~~~rR~~~l~p~r~e~~~e~~~--~---~-~l~~~~~v~~v~----k~~i~~~~~l~~~- 623 (689)
T 3v5w_A 556 GKDCIMHGYMSKMG-NPFLTQWQRRYFYLFPNRLEWRGEGEA--P---Q-SLLTMEEIQSVE----ETQIKERKCLLLK- 623 (689)
T ss_dssp SSCCCEEEEEEEC--------CEEEEEEEETTEEEEECTTSC--C---C-EEEEGGGEEEEE----EEESSSCEEEEEE-
T ss_pred CCcceeecccccCC-CcccchhhhhccccCCCcccccccCCC--C---c-ceeeeccccccc----cCcCCCCcceeee-
Confidence 34578999777654 444679999999999998887753221 1 1 112222222110 0122344555554
Q ss_pred cCCCCceeEEEecchhhHHHHHHHHHhhh
Q 002835 161 DGRDGRAFTLKAESLEDLYDWKTALENAL 189 (875)
Q Consensus 161 ~~~dgrty~fQAdSEeE~~eWI~AI~~ai 189 (875)
..++++|.+++.++.++..|..+|+.+.
T Consensus 624 -~k~~k~f~~~t~~~~~~~~W~~~i~~~~ 651 (689)
T 3v5w_A 624 -IRGGKQFILQCDSDPELVQWKKELRDAY 651 (689)
T ss_dssp -ETTTEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred -ecCCcEEEEECCChHHHHHHHHHHHHHH
Confidence 4578999999999999999999998654
No 118
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=88.34 E-value=3.9 Score=40.50 Aligned_cols=32 Identities=25% Similarity=0.406 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002835 680 SRKKALHERRLALENDVARLKDQLQKERDKRT 711 (875)
Q Consensus 680 ~~~~~~~~~r~~le~~v~~l~~ql~~e~~~~~ 711 (875)
-|-..|..-|.+||+||..||-||..||.-|.
T Consensus 55 ~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~ 86 (168)
T 3o0z_A 55 ERNRILENSKSQTDKDYYQLQAILEAERRDRG 86 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44557778899999999999999999997776
No 119
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=88.25 E-value=2.4 Score=41.99 Aligned_cols=98 Identities=27% Similarity=0.333 Sum_probs=70.7
Q ss_pred hhhhhhcchHHHHHHHHHh-------hhcchhHhhhHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002835 649 EIQRLEDTKSDLQRKIADE-------VKGNEILEASLESRK----------KALHERRLALENDVARLKDQLQKERDKRT 711 (875)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~----------~~~~~~r~~le~~v~~l~~ql~~e~~~~~ 711 (875)
.++-+|..-.|||.+++.- =+..+.|||.|+.=+ ..|.+|...|+.|+++++..+++ +
T Consensus 42 ~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k-----~ 116 (168)
T 3o0z_A 42 SISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEK-----V 116 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H
Confidence 3455556666666655221 256778999987544 36778889999999999887664 2
Q ss_pred HHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHH----HHHHHHHHHHHHHhhhcc
Q 002835 712 AMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLK----QKAKDLRVQLSEQLEKND 770 (875)
Q Consensus 712 ~le~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~v~~l~----~~~~~l~~~l~~~~~~~~ 770 (875)
.. ..+.+-+.|..+|-.-++|+ =++..|+..+.|+..-|-
T Consensus 117 ~~-------------------e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~eqE~~~H~ 160 (168)
T 3o0z_A 117 EG-------------------ERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLEQEVNEHK 160 (168)
T ss_dssp HH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HH-------------------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 23778888999999999988 889999999999876553
No 120
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=87.32 E-value=4.9 Score=37.98 Aligned_cols=35 Identities=31% Similarity=0.424 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 002835 678 LESRKKALHERRLALENDVARLKDQLQKERDKRTA 712 (875)
Q Consensus 678 ~~~~~~~~~~~r~~le~~v~~l~~ql~~e~~~~~~ 712 (875)
.+.+++.|.+....|+++...|+.|||.|+++-+-
T Consensus 32 ~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e 66 (129)
T 2fxo_A 32 SEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLAD 66 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566677888888999999999999999887543
No 121
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=87.30 E-value=3.5 Score=36.44 Aligned_cols=80 Identities=23% Similarity=0.378 Sum_probs=59.2
Q ss_pred HHHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHH
Q 002835 658 SDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVE 737 (875)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~ 737 (875)
.+||.+|-.-.-.|+.|+..+.. +.-+|..++...+.|..+|..+|+-+.. .+.+
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn-----------~~~~~edfk~KyE~E~~~R~~~E~d~~~--------------Lrkd 57 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDN-----------LAEDIMRLREKLQEEMLQREEAENTLQS--------------FRQD 57 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhh
Confidence 46788887666677766655443 4456667777888899999999986642 3778
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 002835 738 LGEIAQAETDIINLKQKAKDLRVQLSEQ 765 (875)
Q Consensus 738 l~~i~~~e~~v~~l~~~~~~l~~~l~~~ 765 (875)
+.+..++-+| ||.||..|...|.=-
T Consensus 58 vD~a~l~r~d---LE~kvesL~eEl~fL 82 (86)
T 3swk_A 58 VDNASLARLD---LERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 8888888877 899999988887643
No 122
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=84.82 E-value=2.4 Score=38.54 Aligned_cols=75 Identities=16% Similarity=0.227 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcC--CCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 002835 686 HERRLALENDVARLKDQLQKERDKRTAMEAGLGE--FNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRV 760 (875)
Q Consensus 686 ~~~r~~le~~v~~l~~ql~~e~~~~~~le~~~~~--~~~~~~~~~~~~~~~~~~l~~i~~~e~~v~~l~~~~~~l~~ 760 (875)
+.||..|.+-|.+|+.++++|..=|.+|+.-..- ...+|.++.++....-+.--.|-.+++++-+++.-+++|..
T Consensus 14 eqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~e~ 90 (98)
T 2ke4_A 14 EQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEAES 90 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3466678899999999999999999999876533 34467777777555555555667777777777777777743
No 123
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=83.92 E-value=8 Score=35.02 Aligned_cols=67 Identities=27% Similarity=0.372 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhh------------hhhhhHHHHH
Q 002835 684 ALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEI------------AQAETDIINL 751 (875)
Q Consensus 684 ~~~~~r~~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~l~~i------------~~~e~~v~~l 751 (875)
.|+......+-++.+|+.+|++|+.+|...|.... ++..+||++ |.+-..-.++
T Consensus 16 ~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~--------------~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~ 81 (97)
T 2eqb_B 16 TLKRELSDRDDEVKRLREDIAKENELRTKAEEEAD--------------KLNKEVEDLTASLFDEANNMVADARKEKYAI 81 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555888999999999999999998888553 345555554 3344455667
Q ss_pred HHHHHHHHHHHHH
Q 002835 752 KQKAKDLRVQLSE 764 (875)
Q Consensus 752 ~~~~~~l~~~l~~ 764 (875)
+.++..|..||..
T Consensus 82 e~kn~~L~~qL~d 94 (97)
T 2eqb_B 82 EILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 7777777777753
No 124
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=80.73 E-value=2.8 Score=48.46 Aligned_cols=31 Identities=19% Similarity=0.246 Sum_probs=13.5
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 002835 735 KVELGEIAQAETDIINLKQKAKDLRVQLSEQ 765 (875)
Q Consensus 735 ~~~l~~i~~~e~~v~~l~~~~~~l~~~l~~~ 765 (875)
++..+++....+...+||+++..|..++..+
T Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~ 556 (597)
T 3oja_B 526 QARRTEADAKQKETEDLEQENIALEKQLDNK 556 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhcchhhHHhhhHHHHHHHhhh
Confidence 3444444444444444444444444444433
No 125
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=77.26 E-value=2.6 Score=30.79 Aligned_cols=28 Identities=21% Similarity=0.337 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002835 677 SLESRKKALHERRLALENDVARLKDQLQ 704 (875)
Q Consensus 677 ~~~~~~~~~~~~r~~le~~v~~l~~ql~ 704 (875)
.||.+-+.|-.+...||++|+||++-|.
T Consensus 5 QLEdKVEeLl~~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 4788888899999999999999998775
No 126
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=77.20 E-value=2.6 Score=30.62 Aligned_cols=28 Identities=25% Similarity=0.437 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002835 677 SLESRKKALHERRLALENDVARLKDQLQ 704 (875)
Q Consensus 677 ~~~~~~~~~~~~r~~le~~v~~l~~ql~ 704 (875)
.||.+-+.|-.+...||++|+||++-|.
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 4788888899999999999999998775
No 127
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Probab=74.76 E-value=3.5 Score=43.70 Aligned_cols=54 Identities=15% Similarity=0.237 Sum_probs=37.9
Q ss_pred eeecCCeeecCCCceeeecCCcceEEEEecCCCCc-eeEEEecchhhHHHHHHHHHhhh
Q 002835 132 NLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDGR-AFTLKAESLEDLYDWKTALENAL 189 (875)
Q Consensus 132 ~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~~dgr-ty~fQAdSEeE~~eWI~AI~~ai 189 (875)
.+.|..|.+...... ...+.++|++... +|+ ++.|+|++..++..|+.+|..+|
T Consensus 207 ~ipL~m~~~tR~~~~--~d~~~~~fev~s~--dG~~t~~l~~~d~~~a~~W~~ai~~~i 261 (263)
T 1z87_A 207 HVSLKMAYVSRRCTP--TDPEPRYLEICAA--DGQDAVFLRAKDEASARSWAGAIQAQI 261 (263)
T ss_dssp EEESSSEEEEEECCS--SCSSSCEEEEEET--TTTEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred ccCcceeeeeeeccc--cCCCCceEEEECC--CCCeeEEEEECCHHHHHHHHHHHHHHh
Confidence 344555555432211 1236778888764 454 68999999999999999999987
No 128
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=74.76 E-value=4.2 Score=30.11 Aligned_cols=28 Identities=32% Similarity=0.452 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002835 677 SLESRKKALHERRLALENDVARLKDQLQ 704 (875)
Q Consensus 677 ~~~~~~~~~~~~r~~le~~v~~l~~ql~ 704 (875)
.||-+-+.|-.+...||++|+||++-|-
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 4777778888999999999999998764
No 129
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=74.26 E-value=18 Score=35.32 Aligned_cols=66 Identities=26% Similarity=0.365 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhh------------hhhhHHHHHH
Q 002835 685 LHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIA------------QAETDIINLK 752 (875)
Q Consensus 685 ~~~~r~~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~l~~i~------------~~e~~v~~l~ 752 (875)
+...+...+.++.+|+++|++|+.+|...|.... ++..+||++. .+-..-.++|
T Consensus 49 l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~--------------~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e 114 (154)
T 2ocy_A 49 LKRELSDRDDEVKRLREDIAKENELRTKAEEEAD--------------KLNKEVEDLTASLFDEANNMVADARKEKYAIE 114 (154)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677899999999999999999998777543 3445555543 3344445566
Q ss_pred HHHHHHHHHHHH
Q 002835 753 QKAKDLRVQLSE 764 (875)
Q Consensus 753 ~~~~~l~~~l~~ 764 (875)
.++..|..||..
T Consensus 115 ~r~~~L~~ql~e 126 (154)
T 2ocy_A 115 ILNKRLTEQLRE 126 (154)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666666654
No 130
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=73.88 E-value=4.5 Score=29.92 Aligned_cols=29 Identities=31% Similarity=0.457 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002835 677 SLESRKKALHERRLALENDVARLKDQLQK 705 (875)
Q Consensus 677 ~~~~~~~~~~~~r~~le~~v~~l~~ql~~ 705 (875)
.||-+-+.|-.+...||++|+||++-|-.
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 47777888999999999999999987743
No 131
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=72.58 E-value=5.2 Score=29.26 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002835 677 SLESRKKALHERRLALENDVARLKDQL 703 (875)
Q Consensus 677 ~~~~~~~~~~~~r~~le~~v~~l~~ql 703 (875)
.||-+-+.|-.+...||++|+||++-|
T Consensus 5 QLEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 477788889999999999999999866
No 132
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=72.43 E-value=36 Score=31.98 Aligned_cols=63 Identities=27% Similarity=0.415 Sum_probs=46.4
Q ss_pred hhhhhhcchHHHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 002835 649 EIQRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEA 715 (875)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~ql~~e~~~~~~le~ 715 (875)
...+|..-|++|+..+.-| ++| =+..|.|-..|..++..||..+..|++.|..|-+....|.+
T Consensus 42 ~~~~l~~Ek~~L~~qL~~E-~~~---l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~ 104 (129)
T 2fxo_A 42 KMVSLLQEKNDLQLQVQAE-QDN---LADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTA 104 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777666654 222 24667888899999999999999999999998887765544
No 133
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=72.14 E-value=4.2 Score=29.75 Aligned_cols=28 Identities=25% Similarity=0.482 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002835 677 SLESRKKALHERRLALENDVARLKDQLQ 704 (875)
Q Consensus 677 ~~~~~~~~~~~~r~~le~~v~~l~~ql~ 704 (875)
.||.+-+.|-.+-..||++|+||++-|.
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHc
Confidence 4788888899999999999999998663
No 134
>1fho_A UNC-89; pleckstrin homology domain, electrostatics, muscle, signal transduction, signaling protein; NMR {Caenorhabditis elegans} SCOP: b.55.1.1
Probab=71.79 E-value=7.9 Score=36.11 Aligned_cols=98 Identities=12% Similarity=0.165 Sum_probs=60.0
Q ss_pred EEEEeeeEeecCCCCccCceeEEEEEeCCeEEEecCCCCCC-CCCCccceeecCCeeecCCCceeeecCCcceEEEEecC
Q 002835 84 VFKSGPLFISSKGIGWTSWKKRWFILTHTSLVFFRSDPSAI-PQKGSEVNLTLGGIDLNNSGSVVVKADKKLLTVLFPDG 162 (875)
Q Consensus 84 v~KEGyL~k~kKg~~~ksWkKRWfVL~~~sL~yYKd~k~~~-p~~g~e~~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~ 162 (875)
.+++|++.+.... +.=+.||+-|=...|+|.|-..... +...-.-.+.+..+.+... ...+..+.|.+....
T Consensus 10 Ll~q~~f~V~~~~---~k~~eR~vFLFe~~ilf~K~~~~~~~~~Y~~K~~ikl~~~~lte~----~~~~d~~kFeiw~~~ 82 (119)
T 1fho_A 10 IIRHDAFQVWEGD---EPPKLRYVFLFRNKIMFTEQDASTSPPSYTHYSSIRLDKYNIRQH----TTDEDTIVLQPQEPG 82 (119)
T ss_dssp SSEEEEEEECSTT---CSCEEEEEEEETTEEEEEEECCSSSSCCCSSCCEEESSSCEEEEE----CTTCCEEEEECCSTT
T ss_pred ccccCceEEEeCC---CCcceEEEEEecCcEEEEEEecCCCCCcEEEeeEEeeceeEEEec----CCCCCCcEEEEccCC
Confidence 5688887776542 2236689999999999999662210 1110001233334433321 111334558876654
Q ss_pred CCCceeEE--Eecchh-hHHHHHHHHHhhh
Q 002835 163 RDGRAFTL--KAESLE-DLYDWKTALENAL 189 (875)
Q Consensus 163 ~dgrty~f--QAdSEe-E~~eWI~AI~~ai 189 (875)
+. ..|.+ ||.|.+ ..+.|+..|....
T Consensus 83 ~~-~~~il~~qA~s~e~~K~~Wv~~I~~~~ 111 (119)
T 1fho_A 83 LP-SFRIKPKDFETSEYVRKAWLRDIAEEQ 111 (119)
T ss_dssp CC-CBCCCCCSSSSCSHHHHHHHHHHHTCC
T ss_pred CC-ceEEEeeecCCcHHHHHHHHHHHHHHH
Confidence 33 46888 999999 9999999999854
No 135
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=71.36 E-value=6.1 Score=28.89 Aligned_cols=28 Identities=32% Similarity=0.459 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002835 677 SLESRKKALHERRLALENDVARLKDQLQ 704 (875)
Q Consensus 677 ~~~~~~~~~~~~r~~le~~v~~l~~ql~ 704 (875)
.||.|-+.|-.+...||++|.||++-|.
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 5888888999999999999999998764
No 136
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=71.24 E-value=4.6 Score=29.41 Aligned_cols=28 Identities=39% Similarity=0.559 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002835 677 SLESRKKALHERRLALENDVARLKDQLQ 704 (875)
Q Consensus 677 ~~~~~~~~~~~~r~~le~~v~~l~~ql~ 704 (875)
.||.+-+.|-.+-..||++|+||++-|.
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 5788888999999999999999998653
No 137
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=68.37 E-value=12 Score=43.13 Aligned_cols=40 Identities=15% Similarity=0.207 Sum_probs=24.2
Q ss_pred hhhhhhhhcchHHHHHHHHHhhhcchhHhhhHHHHHHHHH
Q 002835 647 EVEIQRLEDTKSDLQRKIADEVKGNEILEASLESRKKALH 686 (875)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (875)
+.++..++.....|+.++...-+.-+.++..++.|++.+.
T Consensus 455 ~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~ 494 (597)
T 3oja_B 455 EAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYR 494 (597)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcC
Confidence 3345566666666666666666666666666666655433
No 138
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=68.22 E-value=7.4 Score=28.28 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002835 677 SLESRKKALHERRLALENDVARLKDQL 703 (875)
Q Consensus 677 ~~~~~~~~~~~~r~~le~~v~~l~~ql 703 (875)
.||-+-+.|-.+-..||++|+||++-|
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 477788888899999999999999865
No 139
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=67.63 E-value=34 Score=38.34 Aligned_cols=77 Identities=10% Similarity=0.202 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 002835 684 ALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLS 763 (875)
Q Consensus 684 ~~~~~r~~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~v~~l~~~~~~l~~~l~ 763 (875)
..+.++..|+|++.|+|+-|++=+.--+.----+ +..+.+|+.+.-.-+.-|--+|+.|.+|++++.++..|+.
T Consensus 394 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 394 EARNVTHLLQQELTEAQKGFQDVEAQAATANHTV------MALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446677788888888888765443221100000 0001123333333445677788888888888888888887
Q ss_pred HHh
Q 002835 764 EQL 766 (875)
Q Consensus 764 ~~~ 766 (875)
.+|
T Consensus 468 ~~~ 470 (471)
T 3mq9_A 468 RLR 470 (471)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
No 140
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=67.12 E-value=19 Score=34.42 Aligned_cols=63 Identities=25% Similarity=0.366 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhh------------hhhhHHHHHHHHH
Q 002835 688 RRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIA------------QAETDIINLKQKA 755 (875)
Q Consensus 688 ~r~~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~l~~i~------------~~e~~v~~l~~~~ 755 (875)
...-++.++.+|+..|++|+.+|...|... .++..+||+++ .+-..-.+++.++
T Consensus 40 ~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~--------------~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~ 105 (135)
T 2e7s_A 40 ELSDRDDEVKRLREDIAKENELRTKAEEEA--------------DKLNKEVEDLTASLFDEANNLVADARMEKYAIEILN 105 (135)
T ss_dssp HTTTHHHHHHTHHHHHHHTTSHHHHHHHTT--------------HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334588999999999999999999888854 34455666543 3344455677777
Q ss_pred HHHHHHHHH
Q 002835 756 KDLRVQLSE 764 (875)
Q Consensus 756 ~~l~~~l~~ 764 (875)
..|..||..
T Consensus 106 ~~L~~ql~e 114 (135)
T 2e7s_A 106 KRLTEQLRE 114 (135)
T ss_dssp HHHHHTTTH
T ss_pred HHHHHHHHH
Confidence 777776654
No 141
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=66.78 E-value=5.8 Score=29.06 Aligned_cols=28 Identities=21% Similarity=0.383 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002835 677 SLESRKKALHERRLALENDVARLKDQLQ 704 (875)
Q Consensus 677 ~~~~~~~~~~~~r~~le~~v~~l~~ql~ 704 (875)
.||-+-+.|-.+-..||++|+||++-|.
T Consensus 5 QLEdKvEeLl~~~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 5 QIEDKLEEILSKGHHICNELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhc
Confidence 4777778888899999999999998765
No 142
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=66.64 E-value=0.12 Score=54.30 Aligned_cols=42 Identities=7% Similarity=0.005 Sum_probs=36.9
Q ss_pred eeecCCchhhHhhhccchhhhcccceecccC-CCccccccccC
Q 002835 4 FQIFPPTHSIFAESCNHDAGDLVIGIWSVKA-PNGLRRKNLSG 45 (875)
Q Consensus 4 ~~~~~~~~~~~~~df~~y~~~L~~~lq~tR~-~~~tR~~~esl 45 (875)
+.||+.||..++++|+||+++|+..||++|. ++.++++++.+
T Consensus 208 ~~ff~~g~e~~~~~~~p~~~~l~~~l~~~r~~~~~~~~~~~~~ 250 (265)
T 2q12_A 208 ISFFKMGSENLNEQLEEFLANIGTSVQNVRREMDSDIETMQQT 250 (265)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999955567999999999999999999 99999988887
No 143
>2adz_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} SCOP: b.55.1.1
Probab=65.80 E-value=6.5 Score=39.35 Aligned_cols=54 Identities=15% Similarity=0.220 Sum_probs=38.0
Q ss_pred eeecCCeeecCCCceeeecCCcceEEEEecCCCCc-eeEEEecchhhHHHHHHHHHhhh
Q 002835 132 NLTLGGIDLNNSGSVVVKADKKLLTVLFPDGRDGR-AFTLKAESLEDLYDWKTALENAL 189 (875)
Q Consensus 132 ~i~L~~~~l~~s~sv~~~~~KK~~FvI~~~~~dgr-ty~fQAdSEeE~~eWI~AI~~ai 189 (875)
.+.|..|.+...-...+ .+..+|++... ||+ +.+|+|.+..+...|+.+|...|
T Consensus 122 ~IPLkMayvtR~~~~tD--~e~r~fEv~s~--DG~~t~iLrc~D~a~a~~Wf~aI~sni 176 (178)
T 2adz_A 122 HVSLKMAYVSRRCTPTD--PEPRYLEICAA--DGQDAVFLRAKDEASARSWAGAIQAQI 176 (178)
T ss_dssp EEETTTCEEEEECCSSC--CSSCEEEEEET--TTTEEEEECCSSHHHHHHHHHHHHHHH
T ss_pred eecHHHHHHHHhccCCC--CCccEEEEEcC--CCCeeEEEEeCCHHHHHHHHHHHHHhc
Confidence 45566666554221112 25667888764 454 88999999999999999999877
No 144
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=64.28 E-value=7.8 Score=49.19 Aligned_cols=36 Identities=14% Similarity=0.348 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 002835 682 KKALHERRLALENDVARLKDQLQKERDKRTAMEAGL 717 (875)
Q Consensus 682 ~~~~~~~r~~le~~v~~l~~ql~~e~~~~~~le~~~ 717 (875)
...+...+..|++.+..|+++|+++.+-...|+..+
T Consensus 915 l~~l~~~~~~Le~~l~ele~elee~ee~l~el~~e~ 950 (1184)
T 1i84_S 915 RVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEK 950 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556677777777777776666555555444
No 145
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=63.09 E-value=58 Score=37.17 Aligned_cols=73 Identities=12% Similarity=0.152 Sum_probs=43.4
Q ss_pred hHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHH
Q 002835 673 ILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLK 752 (875)
Q Consensus 673 ~~~~~~~~~~~~~~~~r~~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~v~~l~ 752 (875)
.||++++.+.+.+.+....+-+-...|.+|.....+.. .+..-+.|..+++.+.+|+
T Consensus 125 ~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~-----------------------~~~~~~~i~~L~~~~~~l~ 181 (464)
T 1m1j_B 125 MIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNL-----------------------DNNIPSSLRVLRAVIDSLH 181 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHH-----------------------hccchhHHHHHHHHHHHHH
Confidence 58888888877666655544444334433333222111 0112346667777777888
Q ss_pred HHHHHHHHHHHHHhhh
Q 002835 753 QKAKDLRVQLSEQLEK 768 (875)
Q Consensus 753 ~~~~~l~~~l~~~~~~ 768 (875)
+|+..|...+.++.+.
T Consensus 182 ~ki~~l~~~~~~~~~~ 197 (464)
T 1m1j_B 182 KKIQKLENAIATQTDY 197 (464)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8888888888776654
No 146
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=62.31 E-value=50 Score=34.35 Aligned_cols=55 Identities=24% Similarity=0.405 Sum_probs=28.5
Q ss_pred hhhhhhhcchHHHHHHHH------HhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002835 648 VEIQRLEDTKSDLQRKIA------DEVKGNEILEASLESRKKALHERRLALENDVARLKDQL 703 (875)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~ql 703 (875)
..|.++|..-.+++.||. ..|+.|.-++| |.+.-..+..+...||.++.++.+++
T Consensus 60 ~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~a-L~kEie~~~~~i~~lE~eile~~e~i 120 (256)
T 3na7_A 60 LQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRS-LNIEEDIAKERSNQANREIENLQNEI 120 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555552 34666665554 33444444455555555555555444
No 147
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=60.84 E-value=46 Score=33.56 Aligned_cols=20 Identities=10% Similarity=0.187 Sum_probs=16.1
Q ss_pred CChhhHHHHhhhhhhhhHHH
Q 002835 730 IDEKTKVELGEIAQAETDII 749 (875)
Q Consensus 730 ~~~~~~~~l~~i~~~e~~v~ 749 (875)
+-.+.-..+|.+|++|.++.
T Consensus 135 ~e~kln~aiEr~alLE~El~ 154 (189)
T 2v71_A 135 FEQRLNQAIERNAFLESELD 154 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56677888999999998865
No 148
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=60.45 E-value=60 Score=36.46 Aligned_cols=89 Identities=12% Similarity=0.111 Sum_probs=59.3
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCC---ChhhHHHHhhhhhhhhHHHH
Q 002835 674 LEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTI---DEKTKVELGEIAQAETDIIN 750 (875)
Q Consensus 674 ~~~~~~~~~~~~~~~r~~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~~~~~~---~~~~~~~l~~i~~~e~~v~~ 750 (875)
||-.|-+-.+.+...=..||+.|.+|+..-..=..|..+|...... ++-+.+..+ ..+.+..|++|..+|+.|.+
T Consensus 25 i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~--~Q~~~~d~~e~~tq~skkml~~~~~~e~~~~~ 102 (409)
T 1m1j_C 25 IADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPS--EKQTLPQSIEQLTQKSKKIIEEIIRYENTILA 102 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS--STTCCSSCHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--ccCCCCCchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 3444555555555555556776666666555555677777766443 333334333 56778899999999999998
Q ss_pred HHHHHHHHHHHHHH
Q 002835 751 LKQKAKDLRVQLSE 764 (875)
Q Consensus 751 l~~~~~~l~~~l~~ 764 (875)
-+..+..|+.+|..
T Consensus 103 ~~~~i~~l~~~~~~ 116 (409)
T 1m1j_C 103 HENTIQQLTDMHIM 116 (409)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHh
Confidence 88888888887765
No 149
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=56.84 E-value=19 Score=33.39 Aligned_cols=70 Identities=16% Similarity=0.168 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 002835 691 ALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSEQL 766 (875)
Q Consensus 691 ~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~v~~l~~~~~~l~~~l~~~~ 766 (875)
.|-..+..|++||.++++.|+-||..++...- .--.++.++.+-|-.+|..+..|.+.+..+......+.
T Consensus 10 ~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E------~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL 79 (112)
T 1x79_B 10 KLQLMLRQANDQLEKTMKDKQELEDFIKQSSE------DSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQM 79 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667789999999999999999998754321 01124577888888889888888888877766655543
No 150
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=55.95 E-value=64 Score=40.66 Aligned_cols=15 Identities=13% Similarity=0.191 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHH
Q 002835 351 KLLQRILMMMQTVAS 365 (875)
Q Consensus 351 ~lL~~Ll~~L~~Va~ 365 (875)
.++.||+..++.-..
T Consensus 410 ~LF~wlV~~iN~~l~ 424 (1080)
T 2dfs_A 410 NLFNWIVDHVNKALH 424 (1080)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhc
Confidence 677777777766544
No 151
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=55.44 E-value=46 Score=29.46 Aligned_cols=54 Identities=20% Similarity=0.203 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhh----hhhhhhHHHHHHHHHHHHHHHHH
Q 002835 692 LENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGE----IAQAETDIINLKQKAKDLRVQLS 763 (875)
Q Consensus 692 le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~l~~----i~~~e~~v~~l~~~~~~l~~~l~ 763 (875)
||+-.+.|+.++.||..++.--|+-+ .-+.+ .+.++..+.....++.+||.+|.
T Consensus 23 le~~r~~ir~eI~KElKiKeGaENL~------------------katt~~kk~~~~V~~eL~~sn~kl~~L~~eL~ 80 (86)
T 1cxz_B 23 LELERERLRREIRKELKLKEGAENLR------------------RATTDLGRSLGPVELLLRGSSRRLDLLHQQLQ 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHhHHHHH------------------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666778888999998888666532 22333 45666677777788888887774
No 152
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=54.83 E-value=66 Score=29.83 Aligned_cols=55 Identities=20% Similarity=0.267 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 002835 688 RRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQL 762 (875)
Q Consensus 688 ~r~~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~v~~l~~~~~~l~~~l 762 (875)
.|..+|.|+..|++.|..+.-.|.-||+ +.+.+.+||.-+-.- -+++|.+|+.|+
T Consensus 63 ~r~~~E~di~~lrK~lD~~~l~r~dLE~-----------------~iesL~eEl~FLKk~---heeEl~eLq~qi 117 (119)
T 3ol1_A 63 QREEAENTLQSFRQDVDNASLARLDLER-----------------KVESLQEEIAFLKKL---HEEEIQELQAQI 117 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHH---HHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHH-----------------HHHHHHHHHHHHHHH---HHHHHHHHHHHh
Confidence 4566677777777777666666666665 555666666655432 455666665443
No 153
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=52.54 E-value=1.5e+02 Score=30.66 Aligned_cols=102 Identities=17% Similarity=0.203 Sum_probs=48.2
Q ss_pred hhhhhhcchHHHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCC
Q 002835 649 EIQRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPD 728 (875)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~~~~ 728 (875)
.|.+|+.....|...|++=- .--+.++.+-.++......|+.+++++...+..-+....-.+.-|..-
T Consensus 19 ~i~~l~~~~~~lp~el~~le----~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v-------- 86 (256)
T 3na7_A 19 EIDSLEPLIREKRKDLDKAL----NDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEI-------- 86 (256)
T ss_dssp HHHHTHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--------
Confidence 44455555555543333211 112223333334444444555566666665555555555555444321
Q ss_pred CCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 002835 729 TIDEKTKVELGEIAQAETDIINLKQKAKDLRVQL 762 (875)
Q Consensus 729 ~~~~~~~~~l~~i~~~e~~v~~l~~~~~~l~~~l 762 (875)
.-+...+++..||..++..+..|+.++.++..++
T Consensus 87 ~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~i 120 (256)
T 3na7_A 87 KSERELRSLNIEEDIAKERSNQANREIENLQNEI 120 (256)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1233445555566666555555555555555444
No 154
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=49.98 E-value=16 Score=25.71 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=19.3
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHHH
Q 002835 738 LGEIAQAETDIINLKQKAKDLRVQ 761 (875)
Q Consensus 738 l~~i~~~e~~v~~l~~~~~~l~~~ 761 (875)
-.|+|++||.--.|||+|..|...
T Consensus 7 ekevaqaeaenyqleqevaqlehe 30 (33)
T 1fmh_A 7 EKEVAQAEAENYQLEQEVAQLEHE 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHh
Confidence 357899999999999999877543
No 155
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=49.92 E-value=25 Score=24.78 Aligned_cols=24 Identities=29% Similarity=0.410 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002835 678 LESRKKALHERRLALENDVARLKD 701 (875)
Q Consensus 678 ~~~~~~~~~~~r~~le~~v~~l~~ 701 (875)
||+--..-..--.+|||+|+.|.+
T Consensus 6 lekevaqaeaenyqleqevaqleh 29 (33)
T 1fmh_A 6 LEKEVAQAEAENYQLEQEVAQLEH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 343333334446789999997754
No 156
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=48.74 E-value=1.7e+02 Score=28.64 Aligned_cols=21 Identities=24% Similarity=0.476 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002835 684 ALHERRLALENDVARLKDQLQ 704 (875)
Q Consensus 684 ~~~~~r~~le~~v~~l~~ql~ 704 (875)
.+.++...|+.++.++..++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~ 107 (284)
T 1c1g_A 87 SLNRRIQLFEEELDRAQERLA 107 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443
No 157
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=47.81 E-value=29 Score=26.84 Aligned_cols=31 Identities=19% Similarity=0.401 Sum_probs=28.3
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002835 674 LEASLESRKKALHERRLALENDVARLKDQLQ 704 (875)
Q Consensus 674 ~~~~~~~~~~~~~~~r~~le~~v~~l~~ql~ 704 (875)
|++.|..|-++|.+|=.+||.-+..|+++|+
T Consensus 10 lvsel~~r~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 10 MISDLNERSEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788889999999999999999999999987
No 158
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=47.19 E-value=1e+02 Score=27.18 Aligned_cols=57 Identities=28% Similarity=0.377 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHH
Q 002835 677 SLESRKKALHER--RLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQK 754 (875)
Q Consensus 677 ~~~~~~~~~~~~--r~~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~v~~l~~~ 754 (875)
+.-+|-.|..++ |..=-+.++.|++.|+.|++.|. ++|.-+|-.|.+++++
T Consensus 21 aFgKrEaA~Ee~YfrqkekEqL~~LKkkl~~el~~h~---------------------------~ei~~le~~i~rhk~~ 73 (84)
T 1gmj_A 21 AFGKREQAEEERYFRARAKEQLAALKKHKENEISHHA---------------------------KEIERLQKEIERHKQS 73 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHH
T ss_pred CcccHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHH
Confidence 344555555554 33323334556666666665554 5666777777788888
Q ss_pred HHHHHH
Q 002835 755 AKDLRV 760 (875)
Q Consensus 755 ~~~l~~ 760 (875)
+..|..
T Consensus 74 i~~l~~ 79 (84)
T 1gmj_A 74 IKKLKQ 79 (84)
T ss_dssp HHHHHH
T ss_pred HHHhhh
Confidence 877754
No 159
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=46.13 E-value=76 Score=36.40 Aligned_cols=78 Identities=22% Similarity=0.218 Sum_probs=47.7
Q ss_pred hhHhhhHHHHHH---------HHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHh
Q 002835 672 EILEASLESRKK---------ALHERRLALENDVARLKDQ---LQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELG 739 (875)
Q Consensus 672 ~~~~~~~~~~~~---------~~~~~r~~le~~v~~l~~q---l~~e~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~l~ 739 (875)
..+.++|.+|.. +|.+.|.+|.+++..||.+ +.+++.. + +..+ ..+.++++
T Consensus 16 ~~v~~~~~~R~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~---~-----k~~~---------~~~~~l~~ 78 (485)
T 3qne_A 16 EIIKASQKKRGDSVELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGK---R-----FKAK---------EDAKDLIA 78 (485)
T ss_dssp HHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-----HHTT---------CCCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-----hcCc---------ccHHHHHH
Confidence 345555655543 4566666666666655543 3333321 1 1112 13467888
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 002835 740 EIAQAETDIINLKQKAKDLRVQLSEQL 766 (875)
Q Consensus 740 ~i~~~e~~v~~l~~~~~~l~~~l~~~~ 766 (875)
++..+-.++..|+.++.++..+|....
T Consensus 79 ~~~~l~~~i~~le~~~~~~~~~~~~~l 105 (485)
T 3qne_A 79 EKEKLSNEKKEIIEKEAEADKNLRSKI 105 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888887643
No 160
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=44.01 E-value=54 Score=29.82 Aligned_cols=58 Identities=17% Similarity=0.248 Sum_probs=48.7
Q ss_pred hhhhhhhhhcchHHHHHHH-HHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002835 646 NEVEIQRLEDTKSDLQRKI-ADEVKGNEILEASLESRKKALHERRLALENDVARLKDQL 703 (875)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~ql 703 (875)
+-.+-++||..|.+-+.+| .-|++..+||..-=++=|+--.+||..++.+|.+.++.-
T Consensus 15 E~~L~~~lE~Ar~eA~~~v~~AEAeA~ril~eAe~~a~~l~ae~r~~~~~Et~ri~~ea 73 (105)
T 3v6i_B 15 EKQLLERLEAAKKEAEERVKRAEAEAKALLEEAEAKAKALEAQYRERERAETEALLARY 73 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999 568999999998877777777889999999999987653
No 161
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=42.83 E-value=36 Score=24.99 Aligned_cols=26 Identities=15% Similarity=0.280 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002835 678 LESRKKALHERRLALENDVARLKDQL 703 (875)
Q Consensus 678 ~~~~~~~~~~~r~~le~~v~~l~~ql 703 (875)
||-.-+.|-..-..||++|+||++-|
T Consensus 6 ledKvEel~~~~~~l~nEv~Rl~~lL 31 (34)
T 2r2v_A 6 VADKLEEVASKLYHNANELARVAKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 55555677778889999999999866
No 162
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=42.66 E-value=34 Score=24.10 Aligned_cols=28 Identities=29% Similarity=0.466 Sum_probs=20.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 002835 739 GEIAQAETDIINLKQKAKDLRVQLSEQL 766 (875)
Q Consensus 739 ~~i~~~e~~v~~l~~~~~~l~~~l~~~~ 766 (875)
.|||.+...++-||.++..|.+.+..-.
T Consensus 2 geiaalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 2 GEIAALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888888888888888888765533
No 163
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=42.28 E-value=1.9e+02 Score=26.92 Aligned_cols=32 Identities=19% Similarity=0.312 Sum_probs=20.9
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhc
Q 002835 738 LGEIAQAETDIINLKQKAKDLRVQLSEQLEKN 769 (875)
Q Consensus 738 l~~i~~~e~~v~~l~~~~~~l~~~l~~~~~~~ 769 (875)
+..|.-++..|..|+|++.+....+-+.|-++
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33455566677777777777777776666544
No 164
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=41.24 E-value=61 Score=28.71 Aligned_cols=27 Identities=30% Similarity=0.288 Sum_probs=23.0
Q ss_pred CCchhhhhhhhhcchHHHHHHHHHhhh
Q 002835 643 PSDNEVEIQRLEDTKSDLQRKIADEVK 669 (875)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (875)
.+.|-..-++||..|..|+..|.||.|
T Consensus 13 ~~~d~~~q~~le~~r~~ir~eI~KElK 39 (86)
T 1cxz_B 13 DLAAPGVQQQLELERERLRREIRKELK 39 (86)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccChHHHHHHHHHHHHHHHHHHHHHh
Confidence 344557779999999999999999997
No 165
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=40.28 E-value=88 Score=31.06 Aligned_cols=30 Identities=13% Similarity=0.183 Sum_probs=15.4
Q ss_pred hhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 002835 732 EKTKVELGEIAQAETDIINLKQKAKDLRVQLSE 764 (875)
Q Consensus 732 ~~~~~~l~~i~~~e~~v~~l~~~~~~l~~~l~~ 764 (875)
.+++++..||+.+.++ |..+-.+.+.+|..
T Consensus 113 akI~aL~~Ei~~Lr~q---L~~~R~k~~~em~K 142 (175)
T 3lay_A 113 AKINAVAKEMESLGQK---LDEQRVKRDVAMAQ 142 (175)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 3556666666665554 33344444444433
No 166
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=40.27 E-value=33 Score=32.35 Aligned_cols=32 Identities=22% Similarity=0.293 Sum_probs=26.9
Q ss_pred hhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 002835 733 KTKVELGEIAQAETDIINLKQKAKDLRVQLSE 764 (875)
Q Consensus 733 ~~~~~l~~i~~~e~~v~~l~~~~~~l~~~l~~ 764 (875)
..+++|+.++-+---|..|+.+|+.|..++..
T Consensus 55 ~k~aeLe~leeL~~ki~eL~~kvA~le~e~~~ 86 (125)
T 2pms_C 55 AKKAKLSKLEELSDKIDELDAEIAKLEDQLKA 86 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 56788888877777888999999999999876
No 167
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=39.28 E-value=1.8e+02 Score=24.84 Aligned_cols=35 Identities=14% Similarity=0.329 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002835 677 SLESRKKALHERRLALENDVARLKDQLQKERDKRT 711 (875)
Q Consensus 677 ~~~~~~~~~~~~r~~le~~v~~l~~ql~~e~~~~~ 711 (875)
++..|=|++..+...||.-|..|+.+|+.=+.-+.
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~ 38 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQD 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677888888888888888888876554444
No 168
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=37.20 E-value=1.1e+02 Score=34.42 Aligned_cols=35 Identities=11% Similarity=0.166 Sum_probs=27.9
Q ss_pred hhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 002835 732 EKTKVELGEIAQAETDIINLKQKAKDLRVQLSEQL 766 (875)
Q Consensus 732 ~~~~~~l~~i~~~e~~v~~l~~~~~~l~~~l~~~~ 766 (875)
..+.++++++..+-.++..|++++.++..+|....
T Consensus 64 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (421)
T 1ses_A 64 EEKEALIARGKALGEEAKRLEEALREKEARLEALL 98 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788888888888889998888888886643
No 169
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=36.85 E-value=29 Score=38.85 Aligned_cols=43 Identities=28% Similarity=0.336 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcC
Q 002835 677 SLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGE 719 (875)
Q Consensus 677 ~~~~~~~~~~~~r~~le~~v~~l~~ql~~e~~~~~~le~~~~~ 719 (875)
.|++++++|.+.-..|+.++.+|+++|++|..+|.-|-+-+..
T Consensus 14 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~e 56 (403)
T 4etp_A 14 ALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQE 56 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777888888889999999999999999999988877743
No 170
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=36.73 E-value=2e+02 Score=25.06 Aligned_cols=32 Identities=22% Similarity=0.437 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 002835 680 SRKKALHERRLALENDVARLKDQLQKERDKRT 711 (875)
Q Consensus 680 ~~~~~~~~~r~~le~~v~~l~~ql~~e~~~~~ 711 (875)
.|=|++..+...||.-|..|+.+|+.=+.-|.
T Consensus 13 ~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~ 44 (79)
T 3cvf_A 13 QKVQDLETRNAELEHQLRAMERSLEEARAERE 44 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777777778777777766554444
No 171
>1urf_A Protein kinase C-like 1; transferase, G-protein, HR1 domain, helical, coiled coil, ATP-binding, serine/threonine-protein kinase, phosphorylation; NMR {Homo sapiens} SCOP: a.2.6.1 PDB: 2rmk_B*
Probab=33.96 E-value=89 Score=27.33 Aligned_cols=67 Identities=24% Similarity=0.228 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhc
Q 002835 693 ENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSEQLEKN 769 (875)
Q Consensus 693 e~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~v~~l~~~~~~l~~~l~~~~~~~ 769 (875)
++-+..|++||.-|...+.-.|+-+.+... -..+-+.+|.+--+ -+.+=+.|++-|+.|+.+-.|.+
T Consensus 7 ~~rl~~L~kqL~IElkVK~GAENmi~~y~~-------g~~~drKlLaeAQq---mL~DSk~KIe~lRmqI~k~~q~~ 73 (81)
T 1urf_A 7 LSRVAGLEKQLAIELKVKQGAENMIQTYSN-------GSTKDRKLLLTAQQ---MLQDSKTKIDIIRMQLRRALQAD 73 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------SSSCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------CCchhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhc
Confidence 566889999999999999999998755321 12244566655433 34458899999999997744443
No 172
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=33.28 E-value=20 Score=27.98 Aligned_cols=40 Identities=30% Similarity=0.466 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002835 658 SDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKD 701 (875)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~ 701 (875)
..|.+|+|-..|+||.|..-+.| |..---.||+|++.|.+
T Consensus 6 aqlknrvayklkenaklenivar----lendnanlekdianlek 45 (56)
T 3he4_A 6 AQLKNRVAYKLKENAKLENIVAR----LENDNANLEKDIANLEK 45 (56)
T ss_dssp -----CCCCCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHH----HhcccchHHHHHHHHHH
Confidence 45778888889999987643322 22222335555555443
No 173
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=32.70 E-value=1.2e+02 Score=34.08 Aligned_cols=32 Identities=19% Similarity=0.260 Sum_probs=14.6
Q ss_pred CChhhHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 002835 730 IDEKTKVELGEIAQAETDIINLKQKAKDLRVQ 761 (875)
Q Consensus 730 ~~~~~~~~l~~i~~~e~~v~~l~~~~~~l~~~ 761 (875)
+=..++++=++|..+|+.+..++.++.++-.+
T Consensus 73 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (425)
T 2dq3_A 73 IQNRVKELKEEIDRLEEELRKVEEELKNTLLW 104 (425)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444444444444333
No 174
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=32.44 E-value=2.4e+02 Score=25.24 Aligned_cols=36 Identities=42% Similarity=0.539 Sum_probs=25.7
Q ss_pred hcchhHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002835 669 KGNEILEA-SLESRKKALHERRLALENDVARLKDQLQ 704 (875)
Q Consensus 669 ~~~~~~~~-~~~~~~~~~~~~r~~le~~v~~l~~ql~ 704 (875)
+.||+=.| .++...+....++.++|++|.-|+..+|
T Consensus 18 ~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~ 54 (101)
T 3u1c_A 18 KENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLR 54 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44444433 2566667888888899999999988775
No 175
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=31.90 E-value=84 Score=27.63 Aligned_cols=26 Identities=42% Similarity=0.607 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002835 678 LESRKKALHERRLALENDVARLKDQL 703 (875)
Q Consensus 678 ~~~~~~~~~~~r~~le~~v~~l~~ql 703 (875)
.|.|...|-.++..||..+..|++.|
T Consensus 61 aEe~~~~L~~~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 61 LEDKVEELLSKNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35555666666666666666665544
No 176
>3pk1_B Apoptosis regulator BAX; BCL-2 family fold, regulation of apoptosis, mitochondri apoptosis-apoptosis regulator complex; 2.49A {Homo sapiens} PDB: 3pl7_C 2xa0_C
Probab=31.57 E-value=17 Score=26.56 Aligned_cols=16 Identities=31% Similarity=0.491 Sum_probs=14.1
Q ss_pred HHHHHHhhhcchhHhh
Q 002835 661 QRKIADEVKGNEILEA 676 (875)
Q Consensus 661 ~~~~~~~~~~~~~~~~ 676 (875)
-.||+.|.-+|+.||-
T Consensus 16 L~~IgDEld~N~ELQr 31 (34)
T 3pk1_B 16 LKRIGDELDSNMELQR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHH
Confidence 3689999999999995
No 177
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=30.83 E-value=37 Score=29.32 Aligned_cols=48 Identities=31% Similarity=0.429 Sum_probs=31.3
Q ss_pred hhhcchHHHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002835 652 RLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQL 703 (875)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~ql 703 (875)
.|...|+||=.|+..=.-++.+|+-.|+...++. ..||+-|..|.+.|
T Consensus 27 aLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~----~r~~~ri~elEeEl 74 (77)
T 2w83_C 27 ALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAK----LKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 4677899999999888889999999888776643 34444444444444
No 178
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=30.24 E-value=2.9e+02 Score=31.03 Aligned_cols=92 Identities=15% Similarity=0.177 Sum_probs=58.0
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCC-CCCChhhHHHHhhhhhhhhHHHHHH
Q 002835 674 LEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIP-DTIDEKTKVELGEIAQAETDIINLK 752 (875)
Q Consensus 674 ~~~~~~~~~~~~~~~r~~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~~~-~~~~~~~~~~l~~i~~~e~~v~~l~ 752 (875)
||.-|-+-......-=..||..|..+-..=..=..+=.+|...+.-..-+.+.. ..+-.+.+..|+||-.+|+.|.+.+
T Consensus 25 l~d~L~kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~~ 104 (411)
T 3ghg_C 25 IADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTHD 104 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhH
Confidence 344444444444444445666666665555555556666666554433332211 3455677789999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 002835 753 QKAKDLRVQLSEQ 765 (875)
Q Consensus 753 ~~~~~l~~~l~~~ 765 (875)
..+..|+.+|+..
T Consensus 105 ~~i~~l~~~~~~~ 117 (411)
T 3ghg_C 105 SSIRYLQEIYNSN 117 (411)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999888877654
No 179
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=28.43 E-value=2.9e+02 Score=27.04 Aligned_cols=118 Identities=10% Similarity=0.077 Sum_probs=58.9
Q ss_pred hhhhhhhhcchHHHHH----HHHH-hhhcchhH------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 002835 647 EVEIQRLEDTKSDLQR----KIAD-EVKGNEIL------EASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEA 715 (875)
Q Consensus 647 ~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~------~~~~~~~~~~~~~~r~~le~~v~~l~~ql~~e~~~~~~le~ 715 (875)
+..+.+.+.-+.+|.. ||.. -.-++..+ -..+..|...|+.+-..|.+-+..-+..|+.-..++.....
T Consensus 37 ~~l~~k~~~f~~el~~~~~~~v~~v~~~~~~L~~~~~~~~~~i~~~~~~l~~~W~~L~~~~~~R~~~L~~a~~~~~F~~~ 116 (218)
T 3edu_A 37 TLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYT 116 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777753 2311 00011111 13566777777777777766666666666554444432211
Q ss_pred hhcCC------CCCCCCC-CCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 002835 716 GLGEF------NGSFPIP-DTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSE 764 (875)
Q Consensus 716 ~~~~~------~~~~~~~-~~~~~~~~~~l~~i~~~e~~v~~l~~~~~~l~~~l~~ 764 (875)
+-... ...++.+ ..=...+++++..--..|.++..++.+|..|...-.+
T Consensus 117 ~~e~~~Wl~ek~~~l~~~~g~dl~~v~~l~~~h~~~e~dL~~~~~~v~~l~~~a~~ 172 (218)
T 3edu_A 117 GAEILGLIDEKHRELPEDVGLDASTAESFHRVHTAFERELHLLGVQVQQFQDVATR 172 (218)
T ss_dssp HHHHHHHHHHHHHCCC-------------CCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11000 0001111 1123456788888888899999999998888754443
No 180
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=28.21 E-value=1.5e+02 Score=25.86 Aligned_cols=49 Identities=22% Similarity=0.369 Sum_probs=36.3
Q ss_pred hHHHHHHHHHhhhcchhHhhhHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
Q 002835 657 KSDLQRKIADEVKGNEILEASLESRKK----------ALHERRLALENDVARLKDQLQK 705 (875)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~r~~le~~v~~l~~ql~~ 705 (875)
.-+||+.+-.|++.-..+|-.|.+=|. ....+...|+.++.+|++++.+
T Consensus 12 ~leLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 12 LRELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347888888888887778777755443 4455666799999999999876
No 181
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=27.82 E-value=3.2e+02 Score=27.46 Aligned_cols=23 Identities=13% Similarity=0.221 Sum_probs=12.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHH
Q 002835 741 IAQAETDIINLKQKAKDLRVQLS 763 (875)
Q Consensus 741 i~~~e~~v~~l~~~~~~l~~~l~ 763 (875)
|..++..|..|......|+.+|.
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ir 112 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVR 112 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555553
No 182
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=27.32 E-value=92 Score=39.49 Aligned_cols=9 Identities=11% Similarity=-0.008 Sum_probs=5.4
Q ss_pred Ccccccccc
Q 002835 503 SVVYKDKKN 511 (875)
Q Consensus 503 ~~~~~d~~~ 511 (875)
++|.|+..|
T Consensus 587 g~V~Y~~~g 595 (1184)
T 1i84_S 587 GKVTYNASA 595 (1184)
T ss_dssp CEEEEECTT
T ss_pred ceEEeccCC
Confidence 346777654
No 183
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=26.88 E-value=65 Score=30.08 Aligned_cols=32 Identities=22% Similarity=0.316 Sum_probs=28.3
Q ss_pred hHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 002835 734 TKVELGEIAQAETDIINLKQKAKDLRVQLSEQ 765 (875)
Q Consensus 734 ~~~~l~~i~~~e~~v~~l~~~~~~l~~~l~~~ 765 (875)
-+++|+.+..+|.+|.+|+.++.+|..+|..+
T Consensus 6 ~~~~~~~~~~~e~e~~~l~~~~~el~~~l~~~ 37 (125)
T 1joc_A 6 RRALLERCLKGEGEIEKLQTKVLELQRKLDNT 37 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 36889999999999999999999999988654
No 184
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=26.43 E-value=2.4e+02 Score=25.07 Aligned_cols=36 Identities=33% Similarity=0.392 Sum_probs=25.4
Q ss_pred hcchhHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002835 669 KGNEILEA-SLESRKKALHERRLALENDVARLKDQLQ 704 (875)
Q Consensus 669 ~~~~~~~~-~~~~~~~~~~~~r~~le~~v~~l~~ql~ 704 (875)
+.||+=.| .++...+....++.++|++|.-|+..++
T Consensus 18 ~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq 54 (101)
T 3u59_A 18 KENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLK 54 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44554444 3466667788888889999888888775
No 185
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=26.19 E-value=3.8e+02 Score=29.66 Aligned_cols=69 Identities=19% Similarity=0.306 Sum_probs=37.4
Q ss_pred chhHhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhH
Q 002835 671 NEILEASLESRKKALHERRLA---LENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETD 747 (875)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~r~~---le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~ 747 (875)
++.||-.|.|=++-|..-|-+ --.-|--||+-|.++..--. .+.+++=.||..+++.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~ 458 (471)
T 3mq9_A 399 THLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQ--------------------KKVEELEGEITTLNHK 458 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHH
Confidence 345566665555544444333 23456666666666654311 1445555566666666
Q ss_pred HHHHHHHHHHHH
Q 002835 748 IINLKQKAKDLR 759 (875)
Q Consensus 748 v~~l~~~~~~l~ 759 (875)
+.+++-+|.+|+
T Consensus 459 ~~~~~~~~~~~~ 470 (471)
T 3mq9_A 459 LQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 666666666553
No 186
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=26.16 E-value=3.3e+02 Score=23.77 Aligned_cols=25 Identities=16% Similarity=0.335 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHh
Q 002835 691 ALENDVARLKDQLQKERDKRTAMEA 715 (875)
Q Consensus 691 ~le~~v~~l~~ql~~e~~~~~~le~ 715 (875)
+++.+...|++.|+++...|.-||.
T Consensus 18 ~~eeel~~lke~l~k~e~~rkele~ 42 (89)
T 3bas_A 18 EQLKQMDKMKEDLAKTERIKKELEE 42 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777777788888777777777666
No 187
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=26.10 E-value=66 Score=36.07 Aligned_cols=42 Identities=17% Similarity=0.215 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcC
Q 002835 678 LESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGE 719 (875)
Q Consensus 678 ~~~~~~~~~~~r~~le~~v~~l~~ql~~e~~~~~~le~~~~~ 719 (875)
|.+|++.|.+.-.++..+++++.+||.+|-..|.-|.+-+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~ 56 (412)
T 3u06_A 15 LRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMD 56 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555666666666666666666666555533
No 188
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=25.73 E-value=2.3e+02 Score=32.11 Aligned_cols=34 Identities=15% Similarity=0.180 Sum_probs=26.7
Q ss_pred hhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 002835 733 KTKVELGEIAQAETDIINLKQKAKDLRVQLSEQL 766 (875)
Q Consensus 733 ~~~~~l~~i~~~e~~v~~l~~~~~~l~~~l~~~~ 766 (875)
.+.++++++..+-.++..|+.++.++..+|....
T Consensus 70 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (455)
T 2dq0_A 70 PVDELLAKSREIVKRIGELENEVEELKKKIDYYL 103 (455)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888888888888886643
No 189
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=25.69 E-value=2.4e+02 Score=26.18 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002835 682 KKALHERRLALENDVARLKDQLQK 705 (875)
Q Consensus 682 ~~~~~~~r~~le~~v~~l~~ql~~ 705 (875)
|.|+.++=+..|+||..||+++++
T Consensus 6 ~~~~~~~~~~~e~e~~~l~~~~~e 29 (125)
T 1joc_A 6 RRALLERCLKGEGEIEKLQTKVLE 29 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Confidence 568889999999999999998875
No 190
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=25.34 E-value=2.4e+02 Score=31.44 Aligned_cols=95 Identities=9% Similarity=0.013 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhc-CCCCCCCCCCCCChhhHHHHh-hhhhhhhHHHHHH
Q 002835 675 EASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLG-EFNGSFPIPDTIDEKTKVELG-EIAQAETDIINLK 752 (875)
Q Consensus 675 ~~~~~~~~~~~~~~r~~le~~v~~l~~ql~~e~~~~~~le~~~~-~~~~~~~~~~~~~~~~~~~l~-~i~~~e~~v~~l~ 752 (875)
...+++.|..++.-+.+||+.|.++|+.+++++.--..+...++ ......-.+--.-.+...-.+ ..+..|....+.+
T Consensus 355 ~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (487)
T 3oja_A 355 VTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAI 434 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhchhhhcccccccCcHHHHHHHHHHHHHHHHHHHHHhhcch
Q ss_pred HHHHHHHHHHHHHhhhc
Q 002835 753 QKAKDLRVQLSEQLEKN 769 (875)
Q Consensus 753 ~~~~~l~~~l~~~~~~~ 769 (875)
+.+...+.+..+.++.+
T Consensus 435 ~~~~~~~~~~~~~~~~~ 451 (487)
T 3oja_A 435 RDWDMYQHKETQLAEEN 451 (487)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHh
No 191
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=24.60 E-value=86 Score=36.12 Aligned_cols=109 Identities=9% Similarity=0.153 Sum_probs=62.0
Q ss_pred hhcchHHHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCC-CCCCCC
Q 002835 653 LEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFP-IPDTID 731 (875)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~-~~~~~~ 731 (875)
|...-.||..+|++ |.. +-..+..-|..-++-+..+-++|++...-+.-+++..+.-...|- .-.+|.
T Consensus 55 LdkqErDltkrINE-------LKn----qLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLK 123 (562)
T 3ghg_A 55 IDEVNQDFTNRINK-------LKN----SLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLK 123 (562)
T ss_dssp HHHHHHHHHHHHHH-------HHH----HHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHhhcCcHHHHHHH-------HHH----HHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHH
Confidence 34455567777752 111 112233333344444555555555444444444443322111110 124577
Q ss_pred hhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccCC
Q 002835 732 EKTKVELGEIAQAETDIINLKQKAKDLRVQLSEQLEKNDGF 772 (875)
Q Consensus 732 ~~~~~~l~~i~~~e~~v~~l~~~~~~l~~~l~~~~~~~~~~ 772 (875)
.++..-|..|++|+.-|.++-.||.-|...+--|+.-=-|+
T Consensus 124 ekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgs 164 (562)
T 3ghg_A 124 RKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGS 164 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 78888888888888888888888888888888877765543
No 192
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=23.88 E-value=1.9e+02 Score=25.72 Aligned_cols=59 Identities=12% Similarity=0.278 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 002835 686 HERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRVQLSE 764 (875)
Q Consensus 686 ~~~r~~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~v~~l~~~~~~l~~~l~~ 764 (875)
+..|..|+.-+..|++.| .+|+.+++..=.. .-.||+-=..-|++|+.++..|+.+++.
T Consensus 35 ~~~~~El~~~l~el~e~l---~DL~~SI~i~e~~-----------------~~~EI~~Rk~~v~~l~~~i~~lk~~~~~ 93 (95)
T 2c5k_T 35 DDQEEEIQDILKDVEETI---VDLDRSIIVMKRD-----------------ENEDVSGREAQVKNIKQQLDALKLRFDR 93 (95)
T ss_dssp CTTHHHHHHHHHHHHHHH---HHHHHHHHHHHTS-----------------TTCCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHcC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 477889999999999999 6788888773322 4456666677777788887777777753
No 193
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=23.30 E-value=1.8e+02 Score=24.98 Aligned_cols=48 Identities=27% Similarity=0.314 Sum_probs=33.0
Q ss_pred chhhhhhhhhcchHHHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002835 645 DNEVEIQRLEDTKSDLQRKIADEVKGNEILEASLESRKKALHERRLALENDVARL 699 (875)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~le~~v~~l 699 (875)
+=|.-|+|||.+-.-||.|.|+=. |..+.=.+.|..|=..||+.|+.+
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLL-------aEy~ssQ~KLKqRit~LE~~~~~~ 51 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARIL-------AEYESMQQKLKQRLTKVEKFLKPL 51 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhccc
Confidence 346779999999999999998644 444444444554555677766653
No 194
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=22.26 E-value=48 Score=22.58 Aligned_cols=18 Identities=39% Similarity=0.296 Sum_probs=8.8
Q ss_pred HHHhhhhhhhhHHHHHHH
Q 002835 736 VELGEIAQAETDIINLKQ 753 (875)
Q Consensus 736 ~~l~~i~~~e~~v~~l~~ 753 (875)
.+-.|||++|-.++-|||
T Consensus 11 rlkqeiaaleyeiaaleq 28 (28)
T 3ra3_B 11 RLKQEIAALEYEIAALEQ 28 (28)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 334455555555555543
No 195
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=22.14 E-value=62 Score=28.56 Aligned_cols=29 Identities=28% Similarity=0.394 Sum_probs=21.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002835 675 EASLESRKKALHERRLALENDVARLKDQL 703 (875)
Q Consensus 675 ~~~~~~~~~~~~~~r~~le~~v~~l~~ql 703 (875)
+.+|+.|-++|++.+.+|+++...+..+|
T Consensus 3 ~~~L~~~i~~L~~q~~~L~~ei~~~~a~L 31 (85)
T 3viq_B 3 KSQLESRVHLLEQQKEQLESSLQDALAKL 31 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777788888888888887777665
No 196
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=22.13 E-value=5.7e+02 Score=25.15 Aligned_cols=77 Identities=17% Similarity=0.264 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------HHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhh
Q 002835 678 LESRKKALHERRLALENDVARLKDQLQKERD------------KRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAE 745 (875)
Q Consensus 678 ~~~~~~~~~~~r~~le~~v~~l~~ql~~e~~------------~~~~le~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e 745 (875)
+++=-+++.+-+.+||++-+.|++ +..||+ ||.-|.-|. ..+++.--=.=|++++
T Consensus 18 ~e~aek~~~~k~~~le~ek~~l~~-~e~~r~k~~~h~~~k~~qlre~~d~gt------------t~~~i~~m~~yI~llr 84 (169)
T 3k29_A 18 VDRAEKVVKEKRRLLELEQEKLRE-RESERDKVKNHYMQKIRQLREQLDDGT------------TSDAILKMKAYIKVVA 84 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCC------------CcHHHHHHHHHHHHHH
Confidence 344455778888888888887765 444444 333333321 2233444444577777
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q 002835 746 TDIINLKQKAKDLRVQLSEQLE 767 (875)
Q Consensus 746 ~~v~~l~~~~~~l~~~l~~~~~ 767 (875)
--++.|+++|.+.--++..+++
T Consensus 85 Erea~lEqkVaeq~e~Ve~e~q 106 (169)
T 3k29_A 85 IQLSEEEEKVNKQKENVLAASK 106 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777788887777777766554
No 197
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens}
Probab=22.01 E-value=4.7e+02 Score=24.94 Aligned_cols=111 Identities=12% Similarity=0.165 Sum_probs=69.1
Q ss_pred chhhhhhhhhcchHHHHHH---HH-HhhhcchhHh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---
Q 002835 645 DNEVEIQRLEDTKSDLQRK---IA-DEVKGNEILE------ASLESRKKALHERRLALENDVARLKDQLQKERDKRT--- 711 (875)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~------~~~~~~~~~~~~~r~~le~~v~~l~~ql~~e~~~~~--- 711 (875)
.=+..+++-+.-+.+|..+ +. -...|+..++ ..+++|-.+|+.++.+|.+-...-+..|+.=..++.
T Consensus 38 ~~e~ll~~H~~~~~ei~~~~~~~~~l~~~G~~L~~~~~~~~~~i~~~l~~L~~~w~~L~~~w~~r~~~L~~~l~l~~F~~ 117 (185)
T 3lbx_B 38 SVELLMKYHQGINAEIETRSKNFSACLELGESLLQRQHQASEEIREKLQQVMSRRKEMNEKWEARWERLRMLLEVCQFSR 117 (185)
T ss_dssp SSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777433 31 1122444444 458888888888888888777766666654433331
Q ss_pred ----------HHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 002835 712 ----------AMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRV 760 (875)
Q Consensus 712 ----------~le~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~v~~l~~~~~~l~~ 760 (875)
.-|..|.. ..+ ..-...+.++|.+--..|.++..-+.+|..|..
T Consensus 118 d~~~~~~Wl~~~e~~L~~--~~~---g~sl~~ve~LlkkH~~fe~~l~~~~e~i~~L~~ 171 (185)
T 3lbx_B 118 DASVAEAWLIAQEPYLAS--GDF---GHTVDSVEKLIKRHEAFEKSTASWAERFAALEK 171 (185)
T ss_dssp HHHHHHHHHHHHHHHHHC--CCC---CSSHHHHHHHHHHHHHHHHHHHHTHHHHHHHHS
T ss_pred hHHHHHHHHHHhHhhhcc--CCC---CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Confidence 12233321 111 122346889999999999999999999988863
No 198
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=21.97 E-value=1.8e+02 Score=29.25 Aligned_cols=13 Identities=31% Similarity=0.394 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 002835 692 LENDVARLKDQLQ 704 (875)
Q Consensus 692 le~~v~~l~~ql~ 704 (875)
|-+++.+|.+||+
T Consensus 25 L~~En~~L~~ql~ 37 (190)
T 4emc_A 25 LVNENFVLSEKLD 37 (190)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444443
No 199
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=21.73 E-value=3.9e+02 Score=28.64 Aligned_cols=84 Identities=10% Similarity=0.110 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCCCCCCCCChhhHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 002835 681 RKKALHERRLALENDVARLKDQLQKERDKRTAMEAGLGEFNGSFPIPDTIDEKTKVELGEIAQAETDIINLKQKAKDLRV 760 (875)
Q Consensus 681 ~~~~~~~~r~~le~~v~~l~~ql~~e~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~e~~v~~l~~~~~~l~~ 760 (875)
+.-.+...+-+|.+++.+|..+...=.....+|+.--.++.-+|.++..+-+.++..|+.=-.++..-.++.++...|-.
T Consensus 18 ~r~~lr~~~eql~~~i~~L~~~ap~W~~aq~al~rL~eq~g~~~~ds~~v~~~mq~~Le~Ere~~~~Rd~~a~~k~~Le~ 97 (302)
T 3ibp_A 18 ERMALRQEQEQLQSRIQSLMQRAPVWLAAQNSLNQLSEQCGEEFTSSQDVTEYLQQLLEREREAIVERDEVGARKNAVDE 97 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555566666666666666665666666666556767788888788888888887543333333344444445544
Q ss_pred HHHH
Q 002835 761 QLSE 764 (875)
Q Consensus 761 ~l~~ 764 (875)
++..
T Consensus 98 ~ier 101 (302)
T 3ibp_A 98 EIER 101 (302)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 200
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=21.71 E-value=71 Score=21.79 Aligned_cols=17 Identities=41% Similarity=0.485 Sum_probs=11.8
Q ss_pred hhhhHHHHHHHHHHHHH
Q 002835 743 QAETDIINLKQKAKDLR 759 (875)
Q Consensus 743 ~~e~~v~~l~~~~~~l~ 759 (875)
++|..++-||||+.+|.
T Consensus 11 aleqkiaalkqkiaslk 27 (28)
T 3ra3_A 11 ALEQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 45667777777777763
No 201
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=21.65 E-value=1.6e+02 Score=33.72 Aligned_cols=29 Identities=14% Similarity=0.253 Sum_probs=20.3
Q ss_pred Hhh-hhhhhhHHHHHHHHHHHHHHHHHHHh
Q 002835 738 LGE-IAQAETDIINLKQKAKDLRVQLSEQL 766 (875)
Q Consensus 738 l~~-i~~~e~~v~~l~~~~~~l~~~l~~~~ 766 (875)
+++ ...+-..+..|+.++.++..+|....
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~~~~~~~l 138 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLEEERDKLM 138 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556 66666777777777777777776543
No 202
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=21.29 E-value=3.5e+02 Score=31.65 Aligned_cols=41 Identities=15% Similarity=0.167 Sum_probs=28.0
Q ss_pred HHhhhcchhHhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002835 665 ADEVKGNEILEAS-----LESRKKALHERRLALENDVARLKDQLQK 705 (875)
Q Consensus 665 ~~~~~~~~~~~~~-----~~~~~~~~~~~r~~le~~v~~l~~ql~~ 705 (875)
.++..+++||||- -|+..++=..++-+.|++...|.++..+
T Consensus 467 ~~~~~~~~ilq~d~~l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~ 512 (592)
T 1f5n_A 467 SKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRK 512 (592)
T ss_dssp HTHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566788888875 3555556666777788888777765443
No 203
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=20.81 E-value=1.2e+02 Score=28.15 Aligned_cols=33 Identities=30% Similarity=0.411 Sum_probs=22.1
Q ss_pred hHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002835 673 ILEASLESRKKALHERRLALENDVARLKDQLQK 705 (875)
Q Consensus 673 ~~~~~~~~~~~~~~~~r~~le~~v~~l~~ql~~ 705 (875)
.|.+||++-|..-+.+=..|+-+++.|..+||+
T Consensus 57 tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~ 89 (121)
T 3mq7_A 57 ALMASLDAEKAQGQKKVEELEGEITTLNHKLQD 89 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888876665555555577777777666653
No 204
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=20.45 E-value=1e+02 Score=24.58 Aligned_cols=27 Identities=30% Similarity=0.315 Sum_probs=23.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 002835 742 AQAETDIINLKQKAKDLRVQLSEQLEK 768 (875)
Q Consensus 742 ~~~e~~v~~l~~~~~~l~~~l~~~~~~ 768 (875)
--||.-|.+|+..|++|...|..+...
T Consensus 8 efAERsV~KLek~ID~LEdeL~~eKek 34 (52)
T 2z5i_A 8 YHLENEVARLKKLVDDLEDELYAQKLK 34 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 458999999999999999999887543
No 205
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=20.37 E-value=1.4e+02 Score=21.13 Aligned_cols=25 Identities=32% Similarity=0.489 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002835 678 LESRKKALHERRLALENDVARLKDQ 702 (875)
Q Consensus 678 ~~~~~~~~~~~r~~le~~v~~l~~q 702 (875)
|.+|-+||..|-.+-.|.|.-|++.
T Consensus 6 lkkrvqalkarnyaakqkvqalrhk 30 (33)
T 1fmh_B 6 LKKRVQALKARNYAAKQKVQALRHK 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 7899999999999999999888753
No 206
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=20.32 E-value=3.1e+02 Score=27.12 Aligned_cols=24 Identities=13% Similarity=0.087 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002835 682 KKALHERRLALENDVARLKDQLQK 705 (875)
Q Consensus 682 ~~~~~~~r~~le~~v~~l~~ql~~ 705 (875)
++.+.+-|.+.-.++..|++||..
T Consensus 73 q~ql~~I~~e~r~~~~~Lr~ql~a 96 (175)
T 3lay_A 73 QATAQKIYDDYYTQTSALRQQLIS 96 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555556665543
No 207
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=20.02 E-value=1.1e+02 Score=23.30 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=17.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHH
Q 002835 739 GEIAQAETDIINLKQKAKDLRVQL 762 (875)
Q Consensus 739 ~~i~~~e~~v~~l~~~~~~l~~~l 762 (875)
||+|.+|..+.-||.|+..|.-.|
T Consensus 20 eelaaleselqalekklaalkskl 43 (48)
T 1g6u_A 20 EELAALESELQALEKKLAALKSKL 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777776655
Done!