Query 002837
Match_columns 875
No_of_seqs 489 out of 2461
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 11:47:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002837.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002837hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4271 Rho-GTPase activating 100.0 1.4E-54 3E-59 500.7 15.8 734 97-863 286-1097(1100)
2 cd04402 RhoGAP_ARHGAP20 RhoGAP 100.0 5.4E-40 1.2E-44 337.2 17.9 192 165-376 1-192 (192)
3 cd04372 RhoGAP_chimaerin RhoGA 100.0 1.4E-39 3.1E-44 334.5 18.9 189 166-372 1-194 (194)
4 cd04386 RhoGAP_nadrin RhoGAP_n 100.0 1.8E-39 4E-44 335.9 19.6 197 163-375 2-202 (203)
5 cd04390 RhoGAP_ARHGAP22_24_25 100.0 5.8E-39 1.2E-43 331.2 18.9 191 164-372 1-199 (199)
6 cd04391 RhoGAP_ARHGAP18 RhoGAP 100.0 8.1E-39 1.8E-43 334.2 19.3 200 165-376 1-209 (216)
7 cd04407 RhoGAP_myosin_IXB RhoG 100.0 1.4E-38 2.9E-43 325.4 19.4 185 166-367 1-186 (186)
8 cd04381 RhoGap_RalBP1 RhoGap_R 100.0 1.1E-38 2.3E-43 325.0 16.8 176 166-374 1-181 (182)
9 cd04375 RhoGAP_DLC1 RhoGAP_DLC 100.0 1.6E-38 3.5E-43 332.7 18.5 209 163-375 2-217 (220)
10 KOG1451 Oligophrenin-1 and rel 100.0 7.8E-37 1.7E-41 340.1 32.0 305 14-378 260-573 (812)
11 cd04384 RhoGAP_CdGAP RhoGAP_Cd 100.0 2E-38 4.2E-43 326.5 17.5 190 164-367 1-195 (195)
12 cd04397 RhoGAP_fLRG1 RhoGAP_fL 100.0 2.6E-38 5.7E-43 329.7 17.8 192 166-376 1-211 (213)
13 cd04404 RhoGAP-p50rhoGAP RhoGA 100.0 4.8E-38 1E-42 323.3 18.6 190 162-372 2-195 (195)
14 cd04395 RhoGAP_ARHGAP21 RhoGAP 100.0 9.1E-38 2E-42 321.6 20.1 190 165-372 1-196 (196)
15 cd04383 RhoGAP_srGAP RhoGAP_sr 100.0 4.9E-38 1.1E-42 321.8 17.7 184 164-367 1-188 (188)
16 cd04403 RhoGAP_ARHGAP27_15_12_ 100.0 9.9E-38 2.1E-42 319.2 19.4 183 166-367 1-187 (187)
17 cd04408 RhoGAP_GMIP RhoGAP_GMI 100.0 1.3E-37 2.8E-42 321.6 18.5 186 166-367 1-200 (200)
18 cd04406 RhoGAP_myosin_IXA RhoG 100.0 1.3E-37 2.8E-42 318.1 17.8 184 166-366 1-185 (186)
19 cd04394 RhoGAP-ARHGAP11A RhoGA 100.0 1.9E-37 4.2E-42 320.8 18.2 195 165-376 1-199 (202)
20 cd04376 RhoGAP_ARHGAP6 RhoGAP_ 100.0 3.4E-37 7.4E-42 319.7 18.6 187 177-376 6-204 (206)
21 cd04396 RhoGAP_fSAC7_BAG7 RhoG 100.0 3.5E-37 7.6E-42 323.8 18.6 188 165-372 1-225 (225)
22 cd04398 RhoGAP_fRGD1 RhoGAP_fR 100.0 4.1E-37 9E-42 315.4 17.2 185 166-372 1-192 (192)
23 cd04377 RhoGAP_myosin_IX RhoGA 100.0 7.2E-37 1.6E-41 312.6 18.7 185 166-367 1-186 (186)
24 cd04400 RhoGAP_fBEM3 RhoGAP_fB 100.0 4.4E-37 9.5E-42 315.1 17.0 177 165-374 1-189 (190)
25 cd04378 RhoGAP_GMIP_PARG1 RhoG 100.0 5.3E-37 1.2E-41 317.7 17.8 187 166-367 1-203 (203)
26 cd04373 RhoGAP_p190 RhoGAP_p19 100.0 8.4E-37 1.8E-41 311.9 18.7 161 166-327 1-163 (185)
27 cd04409 RhoGAP_PARG1 RhoGAP_PA 100.0 1E-36 2.3E-41 317.3 18.8 187 166-367 1-211 (211)
28 cd04387 RhoGAP_Bcr RhoGAP_Bcr: 100.0 3.4E-36 7.3E-41 310.0 19.5 163 166-329 1-167 (196)
29 cd04393 RhoGAP_FAM13A1a RhoGAP 100.0 2.9E-36 6.4E-41 308.8 18.5 184 164-367 1-189 (189)
30 cd04379 RhoGAP_SYD1 RhoGAP_SYD 100.0 5.8E-36 1.3E-40 310.6 19.8 195 166-368 1-206 (207)
31 cd04392 RhoGAP_ARHGAP19 RhoGAP 100.0 5.8E-36 1.3E-40 311.0 17.8 186 166-376 1-200 (208)
32 KOG4407 Predicted Rho GTPase-a 100.0 5.8E-37 1.3E-41 360.0 10.1 337 17-376 921-1358(1973)
33 cd04385 RhoGAP_ARAP RhoGAP_ARA 100.0 2.4E-35 5.1E-40 301.0 18.2 180 167-368 2-184 (184)
34 cd04399 RhoGAP_fRGD2 RhoGAP_fR 100.0 2.3E-35 5E-40 307.3 16.8 189 166-374 1-210 (212)
35 cd04382 RhoGAP_MgcRacGAP RhoGA 100.0 7.7E-35 1.7E-39 299.3 18.6 178 177-371 14-192 (193)
36 cd04389 RhoGAP_KIAA1688 RhoGAP 100.0 1.6E-34 3.5E-39 295.6 17.7 178 166-367 1-187 (187)
37 cd04374 RhoGAP_Graf RhoGAP_Gra 100.0 2.1E-34 4.5E-39 298.2 17.5 171 178-367 26-203 (203)
38 cd04388 RhoGAP_p85 RhoGAP_p85: 100.0 6.2E-34 1.3E-38 293.0 17.2 176 170-368 5-184 (200)
39 KOG1117 Rho- and Arf-GTPase ac 100.0 6E-32 1.3E-36 310.5 16.7 324 16-376 489-900 (1186)
40 smart00324 RhoGAP GTPase-activ 100.0 6.3E-31 1.4E-35 264.4 17.6 170 179-367 2-173 (174)
41 KOG1450 Predicted Rho GTPase-a 100.0 5.2E-31 1.1E-35 303.5 18.4 319 34-373 270-649 (650)
42 KOG4270 GTPase-activator prote 100.0 8.5E-30 1.9E-34 293.0 19.3 206 157-378 138-349 (577)
43 cd04380 RhoGAP_OCRL1 RhoGAP_OC 100.0 1.6E-29 3.4E-34 265.1 15.1 158 163-327 10-195 (220)
44 cd00159 RhoGAP RhoGAP: GTPase- 100.0 5.7E-29 1.2E-33 247.3 18.0 168 181-367 1-169 (169)
45 KOG2200 Tumour suppressor prot 100.0 1.5E-29 3.3E-34 283.9 14.6 211 162-376 297-514 (674)
46 KOG4269 Rac GTPase-activating 100.0 1.1E-29 2.3E-34 293.7 11.9 185 159-376 893-1087(1112)
47 PF00620 RhoGAP: RhoGAP domain 99.9 2.4E-28 5.2E-33 239.5 9.6 145 181-326 1-147 (151)
48 KOG4406 CDC42 Rho GTPase-activ 99.9 1.1E-27 2.4E-32 261.1 13.5 201 157-377 245-450 (467)
49 KOG2710 Rho GTPase-activating 99.9 1.2E-26 2.5E-31 258.3 14.7 205 161-376 62-295 (412)
50 KOG4724 Predicted Rho GTPase-a 99.9 2.6E-27 5.6E-32 268.7 7.6 241 159-422 76-316 (741)
51 KOG1453 Chimaerin and related 99.9 2E-24 4.4E-29 265.3 11.3 162 165-327 602-771 (918)
52 PF14389 Lzipper-MIP1: Leucine 99.9 6.7E-24 1.5E-28 191.7 10.4 87 614-700 1-88 (88)
53 KOG3564 GTPase-activating prot 99.9 4.1E-22 8.9E-27 219.5 14.8 148 178-327 360-508 (604)
54 KOG4271 Rho-GTPase activating 99.7 3.7E-18 8E-23 199.9 8.4 161 162-323 914-1076(1100)
55 KOG1452 Predicted Rho GTPase-a 99.7 3.5E-17 7.7E-22 173.4 12.4 164 163-327 182-353 (442)
56 cd01233 Unc104 Unc-104 pleckst 99.6 1.3E-15 2.9E-20 140.9 11.5 91 19-124 2-98 (100)
57 cd04405 RhoGAP_BRCC3-like RhoG 99.6 1.7E-15 3.6E-20 157.7 12.9 185 164-376 20-232 (235)
58 cd01251 PH_centaurin_alpha Cen 99.6 2.8E-15 6.1E-20 139.6 11.1 91 21-125 1-101 (103)
59 cd01264 PH_melted Melted pleck 99.6 5.1E-15 1.1E-19 137.2 9.8 91 21-124 2-101 (101)
60 cd01260 PH_CNK Connector enhan 99.6 1.7E-14 3.7E-19 131.9 10.9 93 21-123 2-96 (96)
61 cd01265 PH_PARIS-1 PARIS-1 ple 99.6 1.8E-14 3.9E-19 132.3 10.7 90 22-123 2-93 (95)
62 cd01238 PH_Tec Tec pleckstrin 99.5 1.6E-14 3.6E-19 135.2 9.5 94 20-123 1-106 (106)
63 cd01235 PH_SETbf Set binding f 99.5 4.4E-14 9.5E-19 129.8 10.1 90 21-124 1-101 (101)
64 cd01252 PH_cytohesin Cytohesin 99.5 7.3E-14 1.6E-18 134.3 11.5 97 20-128 1-117 (125)
65 cd04401 RhoGAP_fMSB1 RhoGAP_fM 99.5 6.9E-14 1.5E-18 144.1 10.9 144 181-327 7-166 (198)
66 cd01236 PH_outspread Outspread 99.5 6.7E-14 1.5E-18 130.6 9.2 90 21-122 1-102 (104)
67 cd01247 PH_GPBP Goodpasture an 99.5 1.5E-13 3.2E-18 125.4 10.4 89 22-122 2-90 (91)
68 cd01257 PH_IRS Insulin recepto 99.5 2.6E-13 5.6E-18 126.2 10.3 92 18-122 1-100 (101)
69 cd01241 PH_Akt Akt pleckstrin 99.5 4.3E-13 9.2E-18 124.8 11.0 97 19-123 1-101 (102)
70 cd01266 PH_Gab Gab (Grb2-assoc 99.4 9.7E-13 2.1E-17 123.5 10.1 88 22-123 2-107 (108)
71 cd01246 PH_oxysterol_bp Oxyste 99.4 1.1E-12 2.4E-17 117.3 10.1 91 21-123 1-91 (91)
72 cd01250 PH_centaurin Centaurin 99.4 1.5E-12 3.3E-17 117.2 9.3 93 21-122 1-93 (94)
73 cd01244 PH_RasGAP_CG9209 RAS_G 99.3 3.1E-12 6.7E-17 118.3 9.3 77 34-123 18-98 (98)
74 PF00169 PH: PH domain; Inter 99.3 1.3E-11 2.9E-16 110.8 12.1 101 19-124 1-103 (104)
75 cd01245 PH_RasGAP_CG5898 RAS G 99.3 5.4E-12 1.2E-16 116.6 8.5 88 21-122 1-97 (98)
76 cd01263 PH_anillin Anillin Ple 99.3 7.6E-12 1.7E-16 120.0 9.6 98 20-123 2-122 (122)
77 cd01253 PH_beta_spectrin Beta- 99.3 2.6E-11 5.7E-16 112.5 10.7 96 22-122 2-103 (104)
78 KOG0930 Guanine nucleotide exc 99.2 2.5E-11 5.4E-16 127.7 9.7 102 19-129 260-380 (395)
79 cd01230 PH_EFA6 EFA6 Pleckstri 99.1 2.3E-10 5E-15 109.2 10.7 102 20-125 1-112 (117)
80 cd01237 Unc112 Unc-112 pleckst 99.1 2.1E-10 4.5E-15 106.8 10.0 92 28-124 11-103 (106)
81 KOG4370 Ral-GTPase effector RL 99.1 5.4E-11 1.2E-15 131.0 7.2 172 179-383 70-282 (514)
82 KOG3565 Cdc42-interacting prot 99.1 1.3E-10 2.9E-15 137.9 8.3 146 179-326 217-366 (640)
83 PF15413 PH_11: Pleckstrin hom 99.1 4.6E-10 9.9E-15 106.4 9.6 97 21-123 1-112 (112)
84 cd01254 PH_PLD Phospholipase D 99.1 8.4E-10 1.8E-14 106.0 10.3 76 36-123 32-121 (121)
85 cd01219 PH_FGD FGD (faciogenit 99.0 3.5E-09 7.5E-14 98.5 11.2 98 19-125 2-100 (101)
86 PF15409 PH_8: Pleckstrin homo 99.0 3.4E-09 7.3E-14 96.2 10.1 86 23-123 1-88 (89)
87 smart00233 PH Pleckstrin homol 98.9 8.9E-09 1.9E-13 90.7 11.5 101 19-124 1-101 (102)
88 PF15410 PH_9: Pleckstrin homo 98.9 3.7E-09 8E-14 101.2 8.5 103 20-124 1-118 (119)
89 cd01256 PH_dynamin Dynamin ple 98.8 2.1E-08 4.5E-13 91.5 9.6 99 19-123 1-104 (110)
90 cd00821 PH Pleckstrin homology 98.7 5.9E-08 1.3E-12 84.7 8.6 92 21-122 1-95 (96)
91 cd00900 PH-like Pleckstrin hom 98.7 1.3E-07 2.8E-12 83.1 10.4 96 22-123 2-99 (99)
92 cd01249 PH_oligophrenin Oligop 98.7 1.1E-07 2.5E-12 88.4 10.1 95 21-121 1-102 (104)
93 cd01234 PH_CADPS CADPS (Ca2+-d 98.6 7.6E-08 1.6E-12 88.5 5.2 97 20-126 3-112 (117)
94 KOG0690 Serine/threonine prote 98.5 1.1E-07 2.3E-12 103.4 6.4 107 15-127 11-119 (516)
95 KOG4724 Predicted Rho GTPase-a 98.5 9E-08 2E-12 111.0 5.2 171 156-326 407-589 (741)
96 cd01220 PH_CDEP Chondrocyte-de 98.4 2.2E-06 4.9E-11 79.7 11.6 97 19-125 2-98 (99)
97 cd01243 PH_MRCK MRCK (myotonic 98.4 3.4E-06 7.3E-11 80.2 11.7 104 20-123 3-118 (122)
98 cd01259 PH_Apbb1ip Apbb1ip (Am 98.4 1.2E-06 2.7E-11 82.1 7.8 101 21-124 2-108 (114)
99 KOG1090 Predicted dual-specifi 98.3 2E-07 4.3E-12 111.1 2.7 94 17-124 1632-1731(1732)
100 KOG3640 Actin binding protein 98.2 1.4E-06 3.1E-11 104.3 6.9 105 16-126 987-1108(1116)
101 cd01242 PH_ROK Rok (Rho- assoc 98.2 2.3E-05 5E-10 73.6 11.8 102 21-124 2-110 (112)
102 PF14593 PH_3: PH domain; PDB: 98.1 2.2E-05 4.8E-10 73.7 10.0 91 16-126 10-101 (104)
103 KOG2059 Ras GTPase-activating 98.1 8E-06 1.7E-10 95.9 8.1 114 16-144 562-683 (800)
104 PF08101 DUF1708: Domain of un 98.1 1.9E-05 4.1E-10 90.4 11.0 146 180-327 8-168 (420)
105 KOG3751 Growth factor receptor 97.6 9.1E-05 2E-09 84.8 7.3 105 18-125 316-425 (622)
106 cd01218 PH_phafin2 Phafin2 Pl 97.6 0.00062 1.3E-08 64.1 11.3 98 18-126 3-100 (104)
107 PLN00188 enhanced disease resi 97.5 0.00038 8.2E-09 83.5 10.6 104 17-127 2-112 (719)
108 cd01261 PH_SOS Son of Sevenles 97.5 0.0008 1.7E-08 64.1 10.2 102 17-125 2-110 (112)
109 cd01239 PH_PKD Protein kinase 97.4 0.00044 9.6E-09 65.6 7.1 90 20-123 1-117 (117)
110 KOG0932 Guanine nucleotide exc 97.4 8.4E-05 1.8E-09 85.4 2.6 102 14-125 501-618 (774)
111 PTZ00267 NIMA-related protein 97.3 0.00057 1.2E-08 79.9 8.9 101 16-125 374-477 (478)
112 KOG0521 Putative GTPase activa 97.3 0.00012 2.6E-09 90.0 3.2 100 17-127 272-371 (785)
113 cd01258 PH_syntrophin Syntroph 97.3 0.0011 2.5E-08 62.6 8.2 99 22-122 2-107 (108)
114 PF12814 Mcp5_PH: Meiotic cell 96.5 0.038 8.3E-07 53.4 12.1 99 24-125 14-122 (123)
115 KOG1453 Chimaerin and related 96.4 0.0015 3.4E-08 82.2 2.4 161 165-326 462-668 (918)
116 KOG0248 Cytoplasmic protein Ma 96.3 0.0023 4.9E-08 75.5 3.0 96 17-125 247-342 (936)
117 cd01222 PH_clg Clg (common-sit 96.3 0.037 8E-07 51.6 10.5 93 18-124 3-95 (97)
118 cd01240 PH_beta-ARK Beta adren 96.3 0.0056 1.2E-07 57.6 4.8 94 18-125 2-99 (116)
119 PF15408 PH_7: Pleckstrin homo 96.2 0.0018 3.8E-08 58.2 1.1 88 22-123 1-96 (104)
120 PLN02866 phospholipase D 96.2 0.038 8.1E-07 69.4 12.4 89 35-128 216-311 (1068)
121 KOG3543 Ca2+-dependent activat 96.2 0.0014 3E-08 76.2 0.2 106 17-127 462-568 (1218)
122 cd01262 PH_PDK1 3-Phosphoinosi 95.9 0.035 7.6E-07 50.8 8.0 86 19-124 1-88 (89)
123 PTZ00283 serine/threonine prot 95.9 0.025 5.4E-07 66.8 9.0 38 86-125 453-490 (496)
124 KOG3723 PH domain protein Melt 95.9 0.0043 9.4E-08 71.9 2.4 94 20-125 736-837 (851)
125 KOG3531 Rho guanine nucleotide 95.4 0.007 1.5E-07 73.0 1.9 84 34-125 937-1020(1036)
126 cd01221 PH_ephexin Ephexin Ple 95.4 0.16 3.6E-06 49.4 10.9 97 19-121 3-119 (125)
127 KOG1739 Serine/threonine prote 94.9 0.037 7.9E-07 63.6 5.5 94 19-125 24-117 (611)
128 cd01224 PH_Collybistin Collybi 94.9 0.31 6.7E-06 46.4 10.8 100 19-122 2-105 (109)
129 KOG4424 Predicted Rho/Rac guan 94.6 0.046 9.9E-07 64.2 5.5 104 13-125 266-370 (623)
130 cd01232 PH_TRIO Trio pleckstri 93.4 1.5 3.3E-05 42.1 12.4 84 36-125 23-113 (114)
131 PF15406 PH_6: Pleckstrin homo 93.2 0.18 3.9E-06 47.7 5.6 70 39-121 41-110 (112)
132 KOG0804 Cytoplasmic Zn-finger 92.7 0.78 1.7E-05 52.8 10.8 109 585-700 347-455 (493)
133 KOG1449 Predicted Rho GTPase-a 92.7 0.025 5.4E-07 66.1 -0.9 74 294-376 1-74 (670)
134 KOG1449 Predicted Rho GTPase-a 92.3 0.038 8.3E-07 64.7 -0.1 176 163-376 207-390 (670)
135 cd01228 PH_BCR-related BCR (br 91.8 0.65 1.4E-05 43.1 7.2 89 19-124 3-94 (96)
136 cd01225 PH_Cool_Pix Cool (clon 91.3 1.1 2.4E-05 42.8 8.4 82 36-123 27-108 (111)
137 PF10186 Atg14: UV radiation r 90.7 2.5 5.4E-05 46.1 11.9 125 579-704 24-157 (302)
138 COG1579 Zn-ribbon protein, pos 90.4 7.2 0.00016 42.2 14.6 70 582-651 10-82 (239)
139 KOG0995 Centromere-associated 90.0 4.8 0.0001 48.0 13.9 102 581-699 220-327 (581)
140 KOG1117 Rho- and Arf-GTPase ac 90.0 0.19 4.1E-06 61.3 2.6 95 16-125 84-178 (1186)
141 KOG3549 Syntrophins (type gamm 89.8 0.58 1.3E-05 52.1 5.9 107 14-124 276-386 (505)
142 PF15404 PH_4: Pleckstrin homo 89.1 1.7 3.7E-05 45.2 8.4 35 21-57 1-35 (185)
143 KOG1737 Oxysterol-binding prot 88.8 0.36 7.8E-06 59.6 3.9 90 20-123 78-167 (799)
144 cd01231 PH_Lnk LNK-family Plec 88.4 2.3 4.9E-05 40.0 7.8 82 34-122 18-106 (107)
145 KOG2391 Vacuolar sorting prote 88.1 9.6 0.00021 42.9 13.7 113 586-700 211-341 (365)
146 cd01227 PH_Dbs Dbs (DBL's big 88.0 4.7 0.0001 39.9 10.3 87 38-125 30-116 (133)
147 cd01226 PH_exo84 Exocyst compl 87.9 3.9 8.5E-05 38.5 9.2 79 38-124 20-98 (100)
148 PF15405 PH_5: Pleckstrin homo 86.8 2 4.3E-05 42.5 7.0 35 89-123 100-134 (135)
149 cd01223 PH_Vav Vav pleckstrin 85.5 4.6 0.0001 39.0 8.4 87 37-126 20-113 (116)
150 PF09755 DUF2046: Uncharacteri 85.2 7.8 0.00017 43.3 11.2 115 625-741 171-291 (310)
151 cd00089 HR1 Protein kinase C-r 84.3 2.6 5.7E-05 36.9 5.8 67 622-700 3-69 (72)
152 PF15411 PH_10: Pleckstrin hom 83.8 12 0.00026 36.1 10.6 98 19-120 7-116 (116)
153 KOG0996 Structural maintenance 83.1 44 0.00095 43.3 17.5 74 617-698 816-896 (1293)
154 PF12240 Angiomotin_C: Angiomo 82.8 13 0.00029 39.1 11.1 71 606-689 13-87 (205)
155 PF09726 Macoilin: Transmembra 81.7 1.5E+02 0.0033 37.1 28.6 33 665-697 544-576 (697)
156 KOG1738 Membrane-associated gu 81.7 0.27 5.9E-06 58.6 -1.8 58 19-80 562-620 (638)
157 PF00038 Filament: Intermediat 81.4 8.8 0.00019 42.5 10.0 65 585-649 50-124 (312)
158 PF00038 Filament: Intermediat 78.7 64 0.0014 35.7 15.7 119 581-699 74-199 (312)
159 PRK10884 SH3 domain-containing 78.2 23 0.00049 37.7 11.3 35 667-701 140-174 (206)
160 KOG4047 Docking protein 1 (p62 78.1 1.2 2.6E-05 51.7 1.9 104 17-125 6-118 (429)
161 KOG3727 Mitogen inducible gene 77.7 0.41 8.9E-06 56.3 -1.9 88 34-125 372-459 (664)
162 cd01248 PH_PLC Phospholipase C 77.3 16 0.00035 34.6 9.1 33 89-122 80-114 (115)
163 PF15619 Lebercilin: Ciliary p 76.4 19 0.00041 37.9 10.0 35 584-618 14-48 (194)
164 TIGR03185 DNA_S_dndD DNA sulfu 75.8 35 0.00075 42.2 13.7 106 584-703 184-292 (650)
165 KOG0161 Myosin class II heavy 73.5 30 0.00064 47.5 12.9 79 618-696 1010-1092(1930)
166 PF00769 ERM: Ezrin/radixin/mo 71.5 99 0.0021 33.7 14.4 112 586-701 2-117 (246)
167 PF07106 TBPIP: Tat binding pr 71.4 18 0.00038 36.8 8.2 65 622-694 73-137 (169)
168 KOG0517 Beta-spectrin [Cytoske 71.1 0.1 2.2E-06 67.8 -9.6 104 17-125 2297-2410(2473)
169 KOG3551 Syntrophins (type beta 71.1 3.9 8.4E-05 46.6 3.6 109 18-127 291-404 (506)
170 KOG0248 Cytoplasmic protein Ma 70.5 2.1 4.6E-05 51.6 1.5 86 20-124 260-348 (936)
171 COG5185 HEC1 Protein involved 70.2 49 0.0011 39.0 11.9 94 583-701 272-365 (622)
172 PF08614 ATG16: Autophagy prot 70.1 51 0.0011 34.4 11.5 99 586-701 85-186 (194)
173 PF08317 Spc7: Spc7 kinetochor 68.6 69 0.0015 36.2 12.9 38 664-701 207-244 (325)
174 PRK11637 AmiB activator; Provi 68.5 34 0.00073 40.0 10.8 31 670-700 100-130 (428)
175 PF12761 End3: Actin cytoskele 68.4 67 0.0014 33.9 11.6 115 560-700 74-194 (195)
176 PF03148 Tektin: Tektin family 68.0 44 0.00096 38.7 11.5 110 588-704 232-355 (384)
177 PF10186 Atg14: UV radiation r 67.8 1.3E+02 0.0028 32.7 14.6 45 583-627 64-108 (302)
178 PF14197 Cep57_CLD_2: Centroso 67.7 26 0.00055 30.9 7.2 55 585-639 1-65 (69)
179 TIGR01843 type_I_hlyD type I s 67.5 86 0.0019 35.8 13.8 26 673-698 210-235 (423)
180 COG1579 Zn-ribbon protein, pos 66.9 1.1E+02 0.0024 33.3 13.4 29 611-639 93-121 (239)
181 KOG4674 Uncharacterized conser 66.9 27 0.00058 47.4 10.2 94 608-701 792-886 (1822)
182 KOG4807 F-actin binding protei 66.6 0.12 2.6E-06 57.9 -9.1 121 583-706 419-546 (593)
183 KOG4236 Serine/threonine prote 65.7 8.8 0.00019 45.7 5.1 100 9-125 403-524 (888)
184 PRK11637 AmiB activator; Provi 64.4 1.4E+02 0.0031 34.9 14.9 88 580-695 168-255 (428)
185 KOG1656 Protein involved in gl 64.3 1.3E+02 0.0028 32.0 12.6 47 559-608 7-54 (221)
186 PF10168 Nup88: Nuclear pore c 63.8 90 0.002 39.2 13.7 109 583-701 552-667 (717)
187 PF12128 DUF3584: Protein of u 62.2 78 0.0017 42.1 13.5 111 580-700 382-496 (1201)
188 PF07888 CALCOCO1: Calcium bin 61.0 40 0.00088 40.6 9.5 51 594-648 141-191 (546)
189 KOG0977 Nuclear envelope prote 60.3 1.1E+02 0.0024 37.1 12.9 100 579-698 110-233 (546)
190 PRK11519 tyrosine kinase; Prov 59.9 1.2E+02 0.0027 37.9 14.1 81 604-693 250-331 (719)
191 PF12240 Angiomotin_C: Angiomo 59.5 1.5E+02 0.0033 31.4 12.3 118 582-699 17-155 (205)
192 PRK09039 hypothetical protein; 59.0 1.2E+02 0.0026 34.6 12.7 18 583-600 47-64 (343)
193 PF02403 Seryl_tRNA_N: Seryl-t 57.8 80 0.0017 29.5 9.3 73 620-699 28-100 (108)
194 PHA02562 46 endonuclease subun 57.7 2.1E+02 0.0045 34.3 15.1 30 665-694 298-327 (562)
195 PF13851 GAS: Growth-arrest sp 57.5 1.4E+02 0.003 31.5 12.0 102 582-694 27-128 (201)
196 TIGR01000 bacteriocin_acc bact 57.3 1.7E+02 0.0036 34.6 13.9 42 610-651 161-202 (457)
197 PF07926 TPR_MLP1_2: TPR/MLP1/ 57.1 2E+02 0.0043 28.2 14.9 59 580-638 19-83 (132)
198 PF08826 DMPK_coil: DMPK coile 56.8 56 0.0012 28.2 7.1 27 613-639 31-57 (61)
199 PF05911 DUF869: Plant protein 56.6 79 0.0017 39.9 11.4 101 581-702 595-695 (769)
200 KOG3523 Putative guanine nucle 56.5 25 0.00055 42.4 6.7 86 34-121 496-591 (695)
201 PRK09841 cryptic autophosphory 56.5 1.2E+02 0.0025 38.2 13.0 143 610-761 256-414 (726)
202 PF06637 PV-1: PV-1 protein (P 56.3 1.3E+02 0.0028 34.8 11.8 60 580-639 302-374 (442)
203 KOG4807 F-actin binding protei 56.2 2.5E+02 0.0054 32.6 14.0 82 35-125 33-115 (593)
204 KOG2129 Uncharacterized conser 55.5 58 0.0013 37.8 9.0 69 584-652 210-316 (552)
205 PLN02372 violaxanthin de-epoxi 55.3 36 0.00079 39.4 7.5 27 576-602 355-381 (455)
206 cd01255 PH_TIAM TIAM Pleckstri 53.8 91 0.002 31.4 9.0 88 36-125 48-155 (160)
207 KOG2129 Uncharacterized conser 53.7 1.6E+02 0.0035 34.4 12.1 68 668-745 248-319 (552)
208 PF05508 Ran-binding: RanGTP-b 53.6 80 0.0017 35.5 9.7 81 585-691 45-136 (302)
209 PRK00409 recombination and DNA 53.2 1.9E+02 0.004 36.9 14.1 79 579-677 517-595 (782)
210 PF02185 HR1: Hr1 repeat; Int 52.8 39 0.00086 29.3 5.9 60 628-701 1-61 (70)
211 PF08317 Spc7: Spc7 kinetochor 52.7 2.9E+02 0.0062 31.3 14.3 24 616-639 179-202 (325)
212 PRK09039 hypothetical protein; 52.6 2.2E+02 0.0048 32.6 13.4 33 581-613 52-84 (343)
213 PHA02562 46 endonuclease subun 52.1 2E+02 0.0043 34.5 13.7 58 581-639 298-355 (562)
214 TIGR02168 SMC_prok_B chromosom 51.6 2.2E+02 0.0047 37.1 14.9 28 671-698 913-940 (1179)
215 TIGR02231 conserved hypothetic 51.4 39 0.00085 40.5 7.5 38 663-700 135-172 (525)
216 TIGR02168 SMC_prok_B chromosom 50.4 2.4E+02 0.0053 36.6 15.0 18 834-851 993-1010(1179)
217 KOG0018 Structural maintenance 48.2 3.4E+02 0.0074 35.4 14.8 117 580-707 650-766 (1141)
218 TIGR02169 SMC_prok_A chromosom 48.1 2.4E+02 0.0052 36.8 14.5 15 584-598 303-317 (1164)
219 PF03962 Mnd1: Mnd1 family; I 48.1 99 0.0021 32.3 8.9 28 666-693 103-130 (188)
220 PF07798 DUF1640: Protein of u 47.6 2.9E+02 0.0063 28.4 12.2 35 608-642 67-101 (177)
221 PF11083 Streptin-Immun: Lanti 46.9 89 0.0019 29.5 7.3 59 584-642 1-73 (99)
222 KOG0161 Myosin class II heavy 46.7 2.4E+02 0.0053 39.3 14.2 35 669-703 1086-1120(1930)
223 PF09726 Macoilin: Transmembra 46.7 7.1E+02 0.015 31.5 21.4 11 581-591 417-427 (697)
224 KOG0996 Structural maintenance 46.6 2.6E+02 0.0056 36.8 13.5 71 583-654 364-438 (1293)
225 PF11559 ADIP: Afadin- and alp 46.5 3E+02 0.0065 27.3 11.9 21 677-697 130-150 (151)
226 TIGR03185 DNA_S_dndD DNA sulfu 46.4 2.3E+02 0.005 35.1 13.3 99 582-699 421-521 (650)
227 KOG1264 Phospholipase C [Lipid 46.4 19 0.00041 44.7 3.7 43 85-127 871-913 (1267)
228 PF04111 APG6: Autophagy prote 46.3 2.3E+02 0.005 32.0 12.1 33 613-645 70-102 (314)
229 TIGR02169 SMC_prok_A chromosom 46.3 3.1E+02 0.0066 35.8 15.0 17 181-197 116-132 (1164)
230 COG2433 Uncharacterized conser 46.2 1.2E+02 0.0025 37.2 10.0 71 582-652 429-505 (652)
231 COG1196 Smc Chromosome segrega 46.2 3.3E+02 0.0071 36.3 15.3 20 830-849 973-992 (1163)
232 PRK02224 chromosome segregatio 46.1 2.6E+02 0.0057 35.6 14.1 32 608-639 308-339 (880)
233 PF07889 DUF1664: Protein of u 46.1 1.9E+02 0.0041 28.6 9.9 67 585-693 57-123 (126)
234 smart00787 Spc7 Spc7 kinetocho 46.0 4.8E+02 0.01 29.5 14.6 47 581-635 147-193 (312)
235 PF06705 SF-assemblin: SF-asse 45.9 3.1E+02 0.0068 29.6 12.8 42 603-644 45-86 (247)
236 KOG1853 LIS1-interacting prote 45.8 3.6E+02 0.0079 29.7 12.6 21 678-698 162-182 (333)
237 PF02841 GBP_C: Guanylate-bind 45.7 3.3E+02 0.0071 30.3 13.2 35 608-642 223-257 (297)
238 KOG3520 Predicted guanine nucl 45.1 33 0.00071 44.6 5.6 45 85-129 682-726 (1167)
239 PRK13182 racA polar chromosome 45.0 1.5E+02 0.0034 30.7 9.7 30 610-639 81-110 (175)
240 PF06248 Zw10: Centromere/kine 44.8 2.7E+02 0.0058 34.1 13.3 105 579-700 11-116 (593)
241 PF07888 CALCOCO1: Calcium bin 44.7 4.4E+02 0.0096 32.2 14.5 39 581-619 142-180 (546)
242 PLN02678 seryl-tRNA synthetase 44.5 63 0.0014 38.3 7.6 74 621-701 33-106 (448)
243 PF06637 PV-1: PV-1 protein (P 43.9 4.7E+02 0.01 30.5 13.7 94 586-702 282-378 (442)
244 COG4026 Uncharacterized protei 43.7 3.4E+02 0.0073 29.4 11.8 28 670-697 174-201 (290)
245 KOG0612 Rho-associated, coiled 43.5 2.2E+02 0.0047 37.6 12.2 77 619-710 747-823 (1317)
246 KOG4424 Predicted Rho/Rac guan 43.4 31 0.00068 41.5 4.8 84 34-125 510-596 (623)
247 PF15397 DUF4618: Domain of un 43.3 1.9E+02 0.0041 31.9 10.4 26 673-698 200-225 (258)
248 PRK10884 SH3 domain-containing 43.1 2.6E+02 0.0056 29.8 11.2 29 671-699 137-165 (206)
249 TIGR01005 eps_transp_fam exopo 43.1 5.5E+02 0.012 32.3 16.0 106 664-769 286-428 (754)
250 KOG0837 Transcriptional activa 43.0 1.5E+02 0.0033 32.6 9.4 57 614-701 213-269 (279)
251 KOG0705 GTPase-activating prot 42.8 20 0.00042 43.1 3.0 34 89-124 446-479 (749)
252 PRK05431 seryl-tRNA synthetase 42.7 1.3E+02 0.0028 35.4 9.8 72 623-701 30-101 (425)
253 PF04156 IncA: IncA protein; 42.1 4E+02 0.0086 27.3 15.4 37 582-618 81-117 (191)
254 TIGR01837 PHA_granule_1 poly(h 42.1 1.1E+02 0.0023 29.7 7.5 21 673-693 96-116 (118)
255 PF12128 DUF3584: Protein of u 42.1 3.8E+02 0.0083 35.9 15.0 24 828-851 896-919 (1201)
256 PF14992 TMCO5: TMCO5 family 42.1 1.4E+02 0.003 33.2 9.2 31 662-692 112-142 (280)
257 KOG2077 JNK/SAPK-associated pr 41.9 62 0.0013 39.0 6.8 54 586-639 319-375 (832)
258 KOG0612 Rho-associated, coiled 41.7 2.7E+02 0.0059 36.8 12.7 27 825-851 754-780 (1317)
259 PRK04863 mukB cell division pr 41.5 2.1E+02 0.0045 39.2 12.4 78 622-699 514-591 (1486)
260 KOG1937 Uncharacterized conser 41.4 3.6E+02 0.0078 32.0 12.6 127 573-700 284-423 (521)
261 PF03938 OmpH: Outer membrane 41.3 2.7E+02 0.0059 27.5 10.7 74 607-702 36-109 (158)
262 PF07798 DUF1640: Protein of u 41.2 1.7E+02 0.0037 30.1 9.4 99 583-690 52-155 (177)
263 PF09486 HrpB7: Bacterial type 40.8 4.2E+02 0.0091 27.2 12.5 100 601-701 13-114 (158)
264 PRK02224 chromosome segregatio 40.7 3.3E+02 0.0072 34.7 13.8 24 828-853 816-839 (880)
265 KOG0976 Rho/Rac1-interacting s 40.4 2.8E+02 0.0061 35.1 12.0 55 586-644 327-381 (1265)
266 TIGR00606 rad50 rad50. This fa 40.2 3.1E+02 0.0067 37.0 13.9 123 570-699 780-921 (1311)
267 PRK12704 phosphodiesterase; Pr 40.0 5.2E+02 0.011 31.4 14.5 38 673-710 117-154 (520)
268 KOG0977 Nuclear envelope prote 39.9 2.2E+02 0.0048 34.6 11.1 78 620-700 105-189 (546)
269 PRK04863 mukB cell division pr 39.9 4.4E+02 0.0096 36.1 15.0 26 670-695 380-405 (1486)
270 TIGR01010 BexC_CtrB_KpsE polys 39.7 2.8E+02 0.0061 31.5 11.8 67 618-693 167-234 (362)
271 PF08581 Tup_N: Tup N-terminal 39.7 1.4E+02 0.0031 27.0 7.4 52 588-639 24-75 (79)
272 PF07106 TBPIP: Tat binding pr 39.7 1E+02 0.0023 31.2 7.5 58 582-639 72-134 (169)
273 COG2433 Uncharacterized conser 39.4 4E+02 0.0087 32.8 13.0 91 581-703 421-511 (652)
274 PF05667 DUF812: Protein of un 39.4 5.6E+02 0.012 31.7 14.7 64 667-734 441-508 (594)
275 PRK03918 chromosome segregatio 39.4 5.1E+02 0.011 33.0 15.2 21 829-849 461-481 (880)
276 PF09304 Cortex-I_coil: Cortex 39.3 2.1E+02 0.0046 27.5 8.7 16 584-599 4-19 (107)
277 COG1842 PspA Phage shock prote 38.9 5.3E+02 0.012 27.9 13.6 35 665-699 84-118 (225)
278 KOG4673 Transcription factor T 38.9 3.4E+02 0.0075 33.8 12.3 104 579-702 663-768 (961)
279 PF06785 UPF0242: Uncharacteri 38.8 3.7E+02 0.0081 30.7 11.8 82 602-700 140-221 (401)
280 KOG0971 Microtubule-associated 38.8 4.4E+02 0.0096 34.0 13.4 136 584-738 426-579 (1243)
281 KOG4270 GTPase-activator prote 38.5 26 0.00056 42.6 3.2 154 158-325 32-196 (577)
282 TIGR03319 YmdA_YtgF conserved 38.4 6.2E+02 0.013 30.7 14.8 37 673-709 111-147 (514)
283 TIGR03007 pepcterm_ChnLen poly 38.3 7.4E+02 0.016 29.3 15.6 35 668-702 312-346 (498)
284 PF10146 zf-C4H2: Zinc finger- 38.1 3E+02 0.0066 29.8 10.9 30 670-699 78-108 (230)
285 PF09744 Jnk-SapK_ap_N: JNK_SA 37.9 1.5E+02 0.0032 30.4 8.1 66 625-696 54-119 (158)
286 PF09787 Golgin_A5: Golgin sub 37.6 3.5E+02 0.0076 32.6 12.6 91 608-702 219-310 (511)
287 PF12325 TMF_TATA_bd: TATA ele 37.5 4E+02 0.0087 26.0 11.4 47 583-637 38-84 (120)
288 cd07596 BAR_SNX The Bin/Amphip 37.5 2.5E+02 0.0055 28.7 10.1 39 663-701 142-180 (218)
289 PLN02320 seryl-tRNA synthetase 36.7 1.8E+02 0.0039 35.1 9.7 37 666-702 130-166 (502)
290 TIGR03752 conj_TIGR03752 integ 36.4 2.1E+02 0.0044 34.2 9.9 30 669-698 112-141 (472)
291 PF13514 AAA_27: AAA domain 36.0 6.7E+02 0.015 33.2 15.8 132 571-703 231-383 (1111)
292 KOG3915 Transcription regulato 35.8 1.6E+02 0.0036 34.7 8.8 64 587-652 501-566 (641)
293 KOG4657 Uncharacterized conser 35.7 2.7E+02 0.0058 30.2 9.7 34 669-702 96-129 (246)
294 PRK13729 conjugal transfer pil 35.5 1E+02 0.0022 36.7 7.3 62 572-637 56-120 (475)
295 KOG4674 Uncharacterized conser 35.5 3.3E+02 0.0072 37.7 12.6 108 581-694 1256-1374(1822)
296 KOG0993 Rab5 GTPase effector R 35.4 2.2E+02 0.0048 33.2 9.6 53 626-695 439-491 (542)
297 COG3937 Uncharacterized conser 35.2 1.1E+02 0.0023 29.4 6.0 22 675-696 85-106 (108)
298 PF04880 NUDE_C: NUDE protein, 35.1 58 0.0012 33.6 4.7 27 670-696 21-47 (166)
299 PRK10929 putative mechanosensi 35.1 6.9E+02 0.015 33.3 15.3 111 581-695 172-287 (1109)
300 PF13094 CENP-Q: CENP-Q, a CEN 35.0 4.8E+02 0.01 26.2 11.3 73 578-650 16-92 (160)
301 TIGR01843 type_I_hlyD type I s 35.0 5.3E+02 0.012 29.3 13.2 27 671-697 244-270 (423)
302 PF06005 DUF904: Protein of un 35.0 1.2E+02 0.0025 27.0 6.0 28 666-693 11-38 (72)
303 PF07820 TraC: TraC-like prote 34.9 1.2E+02 0.0026 28.3 6.1 30 623-652 4-39 (92)
304 PF14282 FlxA: FlxA-like prote 34.5 2.3E+02 0.005 26.8 8.4 63 623-705 21-83 (106)
305 KOG4460 Nuclear pore complex, 34.0 4.7E+02 0.01 31.9 12.2 121 581-711 573-700 (741)
306 PRK11281 hypothetical protein; 33.9 4.4E+02 0.0096 35.0 13.3 41 599-639 212-252 (1113)
307 KOG4593 Mitotic checkpoint pro 33.9 8.3E+02 0.018 30.7 14.6 122 582-704 248-401 (716)
308 TIGR00414 serS seryl-tRNA synt 33.7 2.6E+02 0.0056 32.8 10.4 35 668-702 71-105 (418)
309 KOG1118 Lysophosphatidic acid 33.7 7.6E+02 0.017 28.1 13.1 114 571-701 97-223 (366)
310 COG1196 Smc Chromosome segrega 33.6 6.7E+02 0.015 33.5 15.3 63 583-645 296-368 (1163)
311 PF11932 DUF3450: Protein of u 33.6 1.8E+02 0.004 31.4 8.6 67 584-654 44-110 (251)
312 TIGR03007 pepcterm_ChnLen poly 33.6 3.7E+02 0.008 31.8 11.9 87 604-700 140-231 (498)
313 PF05266 DUF724: Protein of un 33.5 5.9E+02 0.013 26.8 12.2 27 670-696 156-182 (190)
314 PF10211 Ax_dynein_light: Axon 33.4 5.8E+02 0.013 26.7 13.8 67 615-697 121-187 (189)
315 smart00787 Spc7 Spc7 kinetocho 33.3 7.6E+02 0.017 28.0 14.4 10 670-679 250-259 (312)
316 PF14362 DUF4407: Domain of un 33.3 7E+02 0.015 27.6 15.4 86 611-701 132-217 (301)
317 PF08687 ASD2: Apx/Shroom doma 33.1 4.6E+02 0.01 29.1 11.5 109 583-694 94-262 (264)
318 KOG4643 Uncharacterized coiled 33.0 9.8E+02 0.021 31.4 15.2 125 577-701 59-205 (1195)
319 PF05565 Sipho_Gp157: Siphovir 32.8 2.7E+02 0.0058 28.4 9.1 66 578-643 22-90 (162)
320 PF03148 Tektin: Tektin family 32.7 3.9E+02 0.0085 31.0 11.6 99 611-709 47-159 (384)
321 PF11932 DUF3450: Protein of u 32.6 6.7E+02 0.014 27.1 12.8 37 613-649 41-77 (251)
322 TIGR01005 eps_transp_fam exopo 32.6 3.1E+02 0.0068 34.5 11.6 115 581-703 287-406 (754)
323 PF10805 DUF2730: Protein of u 32.5 4.3E+02 0.0093 25.0 9.8 72 607-696 22-95 (106)
324 TIGR00606 rad50 rad50. This fa 32.3 7.1E+02 0.015 33.7 15.4 31 664-694 968-998 (1311)
325 PF10458 Val_tRNA-synt_C: Valy 32.3 1.6E+02 0.0035 25.4 6.3 64 626-692 2-65 (66)
326 KOG2685 Cystoskeletal protein 32.3 8.5E+02 0.019 28.7 13.7 113 582-701 253-379 (421)
327 PF14389 Lzipper-MIP1: Leucine 32.2 1E+02 0.0023 28.3 5.5 55 583-637 9-77 (88)
328 KOG2070 Guanine nucleotide exc 31.5 65 0.0014 38.2 4.8 59 598-656 597-658 (661)
329 PRK15178 Vi polysaccharide exp 31.3 7.4E+02 0.016 29.5 13.4 100 581-697 222-338 (434)
330 PRK14127 cell division protein 31.2 77 0.0017 30.5 4.5 29 670-698 41-69 (109)
331 KOG0933 Structural maintenance 31.1 5.7E+02 0.012 33.4 12.9 31 669-699 846-876 (1174)
332 PF08232 Striatin: Striatin fa 31.0 1.4E+02 0.0031 29.5 6.6 51 587-648 23-73 (134)
333 cd00890 Prefoldin Prefoldin is 30.8 4.1E+02 0.0089 25.1 9.7 39 613-651 5-43 (129)
334 PF08172 CASP_C: CASP C termin 30.8 2.6E+02 0.0057 30.6 9.2 27 675-701 95-121 (248)
335 TIGR02473 flagell_FliJ flagell 30.7 4.5E+02 0.0098 25.2 10.1 39 664-702 66-104 (141)
336 PF05483 SCP-1: Synaptonemal c 30.4 5.3E+02 0.011 32.3 12.1 78 626-703 673-769 (786)
337 PF09730 BicD: Microtubule-ass 30.2 5.1E+02 0.011 32.7 12.4 26 669-694 93-118 (717)
338 COG0419 SbcC ATPase involved i 29.9 4.1E+02 0.0088 34.4 12.1 55 665-721 409-471 (908)
339 PRK11239 hypothetical protein; 29.7 78 0.0017 33.8 4.7 27 670-696 187-213 (215)
340 PRK11546 zraP zinc resistance 29.3 1.8E+02 0.004 29.3 7.0 57 588-649 60-118 (143)
341 PF07246 Phlebovirus_NSM: Phle 29.2 5.8E+02 0.013 28.3 11.3 84 596-705 155-241 (264)
342 PF06698 DUF1192: Protein of u 29.1 1.5E+02 0.0033 25.5 5.5 33 618-650 25-57 (59)
343 PF03962 Mnd1: Mnd1 family; I 28.9 1.6E+02 0.0036 30.7 7.0 19 620-638 109-127 (188)
344 TIGR01069 mutS2 MutS2 family p 28.9 6.6E+02 0.014 32.0 13.4 18 108-125 38-55 (771)
345 PRK12705 hypothetical protein; 28.6 5.5E+02 0.012 31.1 12.1 24 617-640 59-82 (508)
346 PF13514 AAA_27: AAA domain 28.5 7.5E+02 0.016 32.8 14.4 39 660-698 236-274 (1111)
347 KOG4140 Nuclear protein Ataxin 28.5 2.7E+02 0.0059 33.2 9.0 30 623-652 290-319 (659)
348 PF09727 CortBP2: Cortactin-bi 28.4 2.3E+02 0.005 29.9 7.8 47 626-692 139-185 (192)
349 PF14197 Cep57_CLD_2: Centroso 28.3 3.8E+02 0.0082 23.7 8.0 63 625-700 2-67 (69)
350 KOG0993 Rab5 GTPase effector R 28.3 3E+02 0.0065 32.2 9.2 74 612-696 105-185 (542)
351 PF07926 TPR_MLP1_2: TPR/MLP1/ 28.3 4.6E+02 0.01 25.6 9.6 67 583-649 60-126 (132)
352 PRK12787 fliX flagellar assemb 27.7 2.6E+02 0.0057 28.0 7.7 26 662-687 111-137 (138)
353 KOG2072 Translation initiation 27.6 8.2E+02 0.018 31.4 13.2 61 623-702 672-732 (988)
354 PF05700 BCAS2: Breast carcino 27.6 7.8E+02 0.017 26.3 16.1 36 664-699 180-215 (221)
355 TIGR03755 conj_TIGR03755 integ 27.6 1.1E+02 0.0024 35.8 5.9 61 629-689 308-373 (418)
356 PF12761 End3: Actin cytoskele 27.0 2.3E+02 0.005 30.0 7.5 26 674-699 161-186 (195)
357 PF12709 Kinetocho_Slk19: Cent 27.0 1.5E+02 0.0031 27.5 5.3 34 610-643 45-78 (87)
358 PF15188 CCDC-167: Coiled-coil 26.6 3.5E+02 0.0075 25.0 7.7 40 662-707 31-70 (85)
359 PRK10929 putative mechanosensi 26.6 3.4E+02 0.0073 36.0 10.5 22 665-686 172-193 (1109)
360 COG3750 Uncharacterized protei 26.5 1.4E+02 0.003 27.2 4.9 40 583-622 22-68 (85)
361 PF05278 PEARLI-4: Arabidopsis 26.5 4.3E+02 0.0092 29.4 9.7 31 670-700 211-241 (269)
362 PF07321 YscO: Type III secret 26.4 7E+02 0.015 25.4 13.8 71 610-701 32-102 (152)
363 PF07957 DUF3294: Protein of u 26.3 1.4E+02 0.0031 32.0 5.9 34 625-658 74-109 (216)
364 PRK00106 hypothetical protein; 26.3 1.1E+03 0.024 28.8 14.1 98 587-702 48-147 (535)
365 KOG3433 Protein involved in me 26.2 3.4E+02 0.0074 28.5 8.3 64 583-649 75-141 (203)
366 PF10073 DUF2312: Uncharacteri 26.2 2.1E+02 0.0044 25.8 5.9 36 583-618 12-54 (74)
367 PF06705 SF-assemblin: SF-asse 26.2 8.5E+02 0.018 26.3 13.8 78 613-703 113-191 (247)
368 KOG1899 LAR transmembrane tyro 26.1 5.5E+02 0.012 31.8 11.1 16 583-598 112-127 (861)
369 KOG1029 Endocytic adaptor prot 25.9 9.4E+02 0.02 30.7 13.1 111 579-703 390-509 (1118)
370 PF04111 APG6: Autophagy prote 25.6 3.8E+02 0.0082 30.3 9.6 18 670-687 75-92 (314)
371 TIGR02680 conserved hypothetic 25.6 9.8E+02 0.021 32.6 14.9 14 837-850 1100-1113(1353)
372 PF07439 DUF1515: Protein of u 25.5 4.4E+02 0.0094 25.5 8.3 63 619-694 6-68 (112)
373 KOG4403 Cell surface glycoprot 25.2 1.2E+03 0.025 27.8 13.1 108 580-699 250-366 (575)
374 cd00632 Prefoldin_beta Prefold 25.1 5.1E+02 0.011 24.2 9.0 31 670-700 67-97 (105)
375 PRK11239 hypothetical protein; 25.1 93 0.002 33.3 4.3 29 673-701 183-211 (215)
376 KOG0250 DNA repair protein RAD 25.0 6.9E+02 0.015 32.9 12.4 58 582-642 661-724 (1074)
377 PRK10361 DNA recombination pro 25.0 1.3E+03 0.028 27.9 14.9 24 834-857 275-299 (475)
378 PF09731 Mitofilin: Mitochondr 25.0 1.2E+03 0.026 28.3 14.5 21 690-710 363-383 (582)
379 KOG0976 Rho/Rac1-interacting s 24.5 9.4E+02 0.02 30.8 12.8 61 579-639 45-110 (1265)
380 PRK13729 conjugal transfer pil 24.2 1.7E+02 0.0037 34.9 6.6 21 671-691 102-122 (475)
381 KOG2070 Guanine nucleotide exc 24.2 1.2E+02 0.0025 36.2 5.2 80 37-122 325-404 (661)
382 TIGR01000 bacteriocin_acc bact 24.1 1E+03 0.022 28.0 13.3 26 671-696 289-314 (457)
383 PF14817 HAUS5: HAUS augmin-li 24.0 1.8E+02 0.0039 36.1 7.0 41 599-639 52-97 (632)
384 KOG4673 Transcription factor T 23.9 4.6E+02 0.01 32.8 10.0 88 593-683 541-654 (961)
385 PF08614 ATG16: Autophagy prot 23.6 5.2E+02 0.011 26.9 9.6 95 583-694 68-172 (194)
386 PF10234 Cluap1: Clusterin-ass 23.3 3E+02 0.0065 30.6 7.9 84 624-708 127-217 (267)
387 PF05557 MAD: Mitotic checkpoi 23.2 86 0.0019 39.3 4.3 81 618-698 451-535 (722)
388 KOG3863 bZIP transcription fac 23.1 3E+02 0.0065 33.9 8.4 60 615-705 505-564 (604)
389 PF05837 CENP-H: Centromere pr 23.1 5.7E+02 0.012 24.2 8.8 70 583-652 4-82 (106)
390 PF15030 DUF4527: Protein of u 23.0 1.8E+02 0.004 31.6 6.0 82 616-701 11-92 (277)
391 KOG1760 Molecular chaperone Pr 22.9 5E+02 0.011 25.7 8.3 79 618-699 27-121 (131)
392 KOG4348 Adaptor protein CMS/SE 22.7 1.7E+02 0.0037 34.3 6.0 22 628-649 594-615 (627)
393 PF11285 DUF3086: Protein of u 22.5 1.1E+02 0.0024 33.6 4.3 19 617-635 7-25 (283)
394 TIGR03017 EpsF chain length de 22.5 1.2E+03 0.027 26.9 15.1 39 666-704 254-306 (444)
395 PF01920 Prefoldin_2: Prefoldi 22.3 5.4E+02 0.012 23.4 8.5 85 618-702 9-98 (106)
396 PF10224 DUF2205: Predicted co 22.1 5E+02 0.011 23.7 7.8 49 620-699 15-63 (80)
397 PRK11820 hypothetical protein; 22.1 6E+02 0.013 28.5 10.1 97 588-698 133-235 (288)
398 PF08647 BRE1: BRE1 E3 ubiquit 22.1 6.4E+02 0.014 23.4 9.1 68 582-649 3-80 (96)
399 KOG3156 Uncharacterized membra 22.0 1.6E+02 0.0036 31.4 5.3 59 579-638 124-191 (220)
400 PF11180 DUF2968: Protein of u 22.0 9.7E+02 0.021 25.4 11.0 75 579-653 102-186 (192)
401 PF05597 Phasin: Poly(hydroxya 21.9 5.4E+02 0.012 25.6 8.7 19 674-692 110-128 (132)
402 PRK11281 hypothetical protein; 21.8 1E+03 0.022 31.9 13.4 26 664-689 190-215 (1113)
403 PF04880 NUDE_C: NUDE protein, 21.7 96 0.0021 32.0 3.5 38 592-637 3-40 (166)
404 COG4717 Uncharacterized conser 21.6 8.5E+02 0.018 31.5 11.9 120 584-708 184-309 (984)
405 PF02841 GBP_C: Guanylate-bind 21.6 7.9E+02 0.017 27.3 11.1 27 674-700 237-263 (297)
406 PRK13848 conjugal transfer pro 21.5 2.7E+02 0.0058 26.1 5.9 29 624-652 6-40 (98)
407 PF13166 AAA_13: AAA domain 21.4 1.5E+03 0.032 28.1 14.6 66 623-692 324-389 (712)
408 PTZ00186 heat shock 70 kDa pre 21.3 5E+02 0.011 32.5 10.2 39 678-716 605-644 (657)
409 PRK11020 hypothetical protein; 21.2 3.2E+02 0.0069 26.6 6.5 51 625-687 2-52 (118)
410 KOG0249 LAR-interacting protei 21.1 9.5E+02 0.021 30.4 11.9 26 615-640 161-186 (916)
411 PF10359 Fmp27_WPPW: RNA pol I 21.0 3.8E+02 0.0081 32.1 8.8 62 619-702 168-229 (475)
412 KOG0250 DNA repair protein RAD 21.0 1E+03 0.023 31.4 12.8 23 238-264 187-209 (1074)
413 PF11853 DUF3373: Protein of u 20.9 1.1E+02 0.0025 36.5 4.4 29 670-698 28-56 (489)
414 smart00338 BRLZ basic region l 20.9 2.9E+02 0.0062 23.5 5.8 15 622-636 20-34 (65)
415 TIGR02338 gimC_beta prefoldin, 20.8 7.1E+02 0.015 23.5 9.2 39 663-701 64-102 (110)
416 PF06698 DUF1192: Protein of u 20.7 1.4E+02 0.0031 25.6 3.8 26 668-693 23-48 (59)
417 COG0172 SerS Seryl-tRNA synthe 20.7 5.4E+02 0.012 30.6 9.7 88 607-700 13-102 (429)
418 PF12718 Tropomyosin_1: Tropom 20.7 8.6E+02 0.019 24.3 13.9 68 617-698 38-105 (143)
419 PF14282 FlxA: FlxA-like prote 20.4 5.7E+02 0.012 24.2 8.2 59 581-640 18-77 (106)
420 PF05529 Bap31: B-cell recepto 20.4 7E+02 0.015 25.7 9.7 76 582-695 115-190 (192)
421 PTZ00464 SNF-7-like protein; P 20.3 1.1E+03 0.023 25.3 12.5 98 581-683 74-174 (211)
422 PF04714 BCL_N: BCL7, N-termin 20.3 55 0.0012 27.2 1.1 21 34-54 27-47 (52)
No 1
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-54 Score=500.69 Aligned_cols=734 Identities=29% Similarity=0.312 Sum_probs=576.7
Q ss_pred CCCCceEEEEeCCHHHHHHHHHHHHHHHhhCCcc-hhccCCcccccCCCCccccCc-cccccCCCCCCCcccccchHHHh
Q 002837 97 GRDGRAFTLKAETSEDLYEWKTALELALAQAPSA-ALVMGHNGIFRNDTNDTIEGS-FHQWRDKRPVKSLVVGRPILLAL 174 (875)
Q Consensus 97 ~~~gRty~LqAdTeeE~~eWv~AI~~al~~aP~~-a~~~g~~~if~~~~~~~~~~s-~~~~k~k~~~k~~VFGvpL~~ll 174 (875)
..+++.|...+++..++.+|-.+++.+..+||.+ +.++||+|+|+.+..++..+. +..++...++.+.+||+|..-.+
T Consensus 286 ~~~a~~fsdKmeti~d~le~e~rye~~~~~Aperdalil~higfv~~~t~~tc~s~~~c~d~~~t~llss~~~rps~g~l 365 (1100)
T KOG4271|consen 286 ELDAKPFSDKMETIQDVLEEEARYEAALKQAPERDALILKHIGFVYHPTKETCPSCPACVDAKITPLLSSVLGRPSLGAL 365 (1100)
T ss_pred hhccccccchhHHHHHHHHhHHHHHHHHHhCcchhhhhhhcCceeeCCCCCCCCCccchhhhccchhhhhhhcCcchhhh
Confidence 4567889999999999999999999999999999 899999999999988776543 67788889999999999999899
Q ss_pred hhcCCCcHHHHHHHHHHHhcCCcccC---ccccCC-CHHHHHHHHHHHh-cCCCCC--CCCCCcc--hhhhhhh--hhhc
Q 002837 175 EDIDGGPSFLEKALRFLEKFGTKVEG---ILRQAA-DVEEVDRRVQEYE-QGKTEF--SADEDAH--VIGDCVK--HVLR 243 (875)
Q Consensus 175 ~~~~~VP~iL~~~i~~Le~~Gl~~EG---IFRisG-~~~~V~~L~~~ld-~G~~~~--~~~~D~h--~VAslLK--~fLR 243 (875)
+..++-|.|..+.+.+|..+|+..|| |-|+++ ++..|+.-+..|+ .|...+ ....+|| .|...++ .-||
T Consensus 366 e~~d~sp~~~~knL~~l~~~Gl~~E~~n~I~~qsa~D~~~id~kiyE~s~dgkt~~~v~~~~~ph~s~v~e~Ie~~~~lr 445 (1100)
T KOG4271|consen 366 ENSDGSPNIDEKNLVILGKDGLAGEGANEIRRQSADDVYVIDGKIYELSIDGKTRLPVNSFQQPHLSYVGESIEKSHSLR 445 (1100)
T ss_pred hhhcCCcccchhhhhhhhhcccchhhhHHHHHhcccchhhhhhhhhhcccccccccchhhhcCcchhHHHhhhhhhhhhh
Confidence 99999999999999999999999999 999999 8888888777776 565433 3345899 6888888 8899
Q ss_pred cCCCCCCChhhHHHHHHH--HhcCCHHHHHHHHHHHHHhh--CChhHHH----HHHHHHHHHHHHhcCcCCCCCCcc-ch
Q 002837 244 ELPSSPVPASCCTALLEA--YKIDRKEARISAMRSAILET--FPEPNRR----LLQRILRMMHTISSHAHENRMTPS-AV 314 (875)
Q Consensus 244 eLPePLLp~~ly~~~i~~--~~~~~~eeri~~l~~lLl~~--LP~~N~~----lL~~Ll~~L~~Va~~s~~NKMta~-NL 314 (875)
.++..+.|..+|..+..+ +...-.+.|+..++..+++. .|.+|+. ++.+|+.++..+..++..|.|++. ..
T Consensus 446 ~~~~~~~~~~~C~~ld~a~gY~~~~Ne~riss~~~aices~~~p~pnnk~~~d~~LRivm~m~~g~~~s~~ni~n~~~~s 525 (1100)
T KOG4271|consen 446 QQGQQIAPKLQCVFLDEASGYGRDINEKRISSVLKAICESRNSPEPNNKDLADLDLRIVMCMMCGDPFSADNILNPVLAS 525 (1100)
T ss_pred hcccccCCccccccccccccccccccHHHHHHHHHHHHhhcCCCccccchhHHHHHHHHHHHhcCCchhhhhhcChhhHH
Confidence 999999999999988877 66666788999999999988 8999888 889999999999999999999999 99
Q ss_pred hhhccc-cccC-CCCCCCCCcccc-cccCCCchHH----HHHHHHHHH-HHHHHHHHHHhhccccCCCcccccccCCCCC
Q 002837 315 AACMAP-LLLR-PLLAGECELEDD-FDMNGDNSAQ----LLAAANAAN-NAQAIIATLLEEYENIFDDESLHRCSISADS 386 (875)
Q Consensus 315 Ai~FaP-~LLr-p~~~~~~~led~-~~~~g~~s~q----~~~a~~~~~-~~~~iVe~LIeny~~IF~~~~~~~~s~s~~s 386 (875)
+.|++| .|++ |-..+.|.++.. |+..|+...+ ++.|...++ .++.+|-.+++.|..||.+..+.++..+..+
T Consensus 526 ~aCkS~~llL~~pI~~~krrie~~~f~v~~de~vh~~~~~~sA~~~An~~aQ~iI~~~l~D~~si~~~~gl~~~~~s~~s 605 (1100)
T KOG4271|consen 526 AACKSPHLLLRLPIGAGKRRIELSSFDVRKDELVHGYIVLYSAKRKANMEAQDIIPVALTDYASIFLDNGLSREQLSEGS 605 (1100)
T ss_pred HHhcChHHHHhcccccccceecccccccccchhHHHHHHHHHHHhhccchHhhhhhHHhhcchhhhcccchhhhhccccc
Confidence 999999 6787 656788888876 8999999988 777777777 5999999999999999999988777666554
Q ss_pred CCCCCC--CCCCCcccccccCCCCCCCCCCCCCCCCCCCcccccCCCCcccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 002837 387 HVDNSG--SEDSSDEENLDMKNNGYHDAQNEVDPESDDDPERAHSGKLSESSGYAGSDLYDYKALGGDDSDVGSPRNNNA 464 (875)
Q Consensus 387 s~~~~~--sedssd~~~~~~~d~syds~e~e~~~~~d~~~~~~~s~~~Se~s~~~~sd~~~~~~~~~~~s~~~~~~~~~~ 464 (875)
.+..+. +.++.+.+.+-.....-.+..++++-..+.|..........|......+|++.|.+++..|++.+++...+.
T Consensus 606 ~iats~pl~q~~~~~es~~~~~~D~~e~~im~e~s~~~dn~~~a~~~tee~~~~Sp~~s~~~~~~~~~d~d~ds~p~~Sp 685 (1100)
T KOG4271|consen 606 EIATSIPLSQPSHKLESFTPFFSDVVEKKIMIEGSHMSDNAAEACSTTEEVFNFSPRDSSPYCNSNLQDSDEDSPPSYSP 685 (1100)
T ss_pred ccccccccCCCchhccccccccccccchhhccccccCCccccccccCchhhcCCChhhcccccCCCccccCCCCCCCcCC
Confidence 433222 233333333322222222222222222222222333455566777788899999999999999999999998
Q ss_pred ccccCCCCCCCCCCCCCCChhhhhhhccccCCCCcccccccCccCCCCCcccccccccccCCCCCCCC-CCCCCCccCCC
Q 002837 465 SAESSKLPIDPIQIGDPGDQVVEQQGKQKKGNENSITEMEVSSVLPAGESYHSMGEILSSVDPGHPLS-VSGLESSAEKP 543 (875)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 543 (875)
+.+.++++..|...|.+.. . .+.+.-++....+.+++...|+....|+.|.+ +++.+..+.|+
T Consensus 686 ~~e~t~lsst~k~~S~~~~------d----------~g~~~~~i~~~~~n~~~~r~i~~Vs~pi~Pk~vs~dvt~~a~kp 749 (1100)
T KOG4271|consen 686 FREDTSLSSTSKDHSKLSM------D----------LGGNDVGISFTMNNFESKRNINKVSPPIKPKAVSPDVTFDATKP 749 (1100)
T ss_pred ccCcccccCCccccccccc------c----------ccCCCCCcccccchhHhhhhcccCCCCCCCCcCCCCcccccccC
Confidence 8899998877654443322 1 11122234455566677777777666766665 44555667777
Q ss_pred -CCCCCCCCCCCCcccccccCcccCCCCcccCCCChhHHHHHhH-----hhhhhHHHHHHHHHHhhhhhhhhhhHHHHHH
Q 002837 544 -VGKGTSSNFSAKRSAFWGRSNARKTSSVESIDSSGEEELAIQR-----LEITKNDLRHRIAKEARGNAILQASLERRKQ 617 (875)
Q Consensus 544 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~ 617 (875)
++.+.++...++|...|||+.+.|++.+|++|.+++|++.|+| ++.+|.|+|+||+||+|+|+.+||++|+|++
T Consensus 750 ~~sls~asi~~~~Rks~~~~~~g~~~l~~es~~~s~eD~~~~~r~e~~ni~~~k~dsq~Ri~k~~k~~~~~QaSder~nk 829 (1100)
T KOG4271|consen 750 DLSLSDASIRDGQRKSVSGRTWGPKDLFDESDYASPEDAVVKPRNEEENIYSVKDDSQQRIIKEIKNNNKLQASDERRNK 829 (1100)
T ss_pred cccccccccccCccccccCCCCCcccCCchhcccCcchhhhcccccccceeecchhhhhHHHHHhhcchhhhhhhhhccc
Confidence 3345556677888899999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh--hcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 618 ALHERRLALE-QDVSRLQEQLQAERDLRAALEVG--LSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (875)
Q Consensus 618 ~~~~~r~~Le-qeV~~Lq~qL~~E~~l~~~Le~a--l~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~ 694 (875)
+++++|.+|| +++.+||.++|.|+..|.+...+ +....|.. ...-.|.++++-|.+++..|.+ ++|.+++.+...
T Consensus 830 s~~~~rts~E~~ekgr~rs~~qapr~~rka~~k~~~lt~~~~~~-d~~~~~sktskkl~k~k~a~hD-a~lktk~~n~pa 907 (1100)
T KOG4271|consen 830 SDSERRTSLEFLEKGRLRSIVQAPRLYRKACLKGGLLTNSAGGS-DLSAGPSKTSKKLEKNKLAKHD-AKLKTKTKNTPA 907 (1100)
T ss_pred ccccccccccHhhhhhhhhccccchhHHHHHHhccCcccccccc-ccccCcccchHHHhhhcccccc-ccccccccCCcc
Confidence 9999999999 99999999999999999999987 66555533 3466899999999999999999 999999999999
Q ss_pred HHH--HHHhhhcCCCcccchhhhcccccchhhhhcccccchhhhhhhhhhhhhcc-cccccchhhhccccccCCCCCCCC
Q 002837 695 QLN--QQRQHHYGSLSDACDRYQNVQNHNSQQRFLQQDFDSTLAFVNHERKQRTE-NLLGADWRNIKGQGLATGSSNRLP 771 (875)
Q Consensus 695 ~l~--~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 771 (875)
+.+ .+++....++++.....+.+|.|..|-+..++++..+.++..|.+-.+|+ .....+|++-.. ..+++++..
T Consensus 908 ~~stt~~s~~~~~~l~~~~t~~k~ip~~~ekc~sfiedtg~~te~lyrv~gnkT~~eelrkqf~n~~~---~dl~s~d~~ 984 (1100)
T KOG4271|consen 908 RRSTTWESNYFLTPLQDAVTSEKPIPIFLEKCKSFIEDTGLSTEGLYRVSGNKTDLEELRKQFLNDHN---FDLSSMDTT 984 (1100)
T ss_pred cccchhhhhccCCcccccccCCcccchHHHHHHHHHHhccchhhhheecCCCCccHHHHHHHHHhhcc---ccccccccc
Confidence 999 99999999999999999999999999999999999999999999999988 778888876222 111344432
Q ss_pred ccccccccccCCCccccccccccccccccCCCCCCCCCCCCccccccCC--CC-CCchhhHHHHhhhhhhHHHHHHHHH-
Q 002837 772 RKQFVESTSLSDSKSTEASTNVSMDELCGVDSASVPSTSRPIEATDYAR--HP-STASSALVELTTRLDFFKERRSQLM- 847 (875)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~s~l~~lt~rl~f~kerrsq~~- 847 (875)
-+--.-+. +.--+....|++.++. ++--.-+.-..|+|| |+ ..++.+|..+| ++|||++++||+
T Consensus 985 v~~vagAl-----ksffa~Lpeplipys~-----h~~~~e~~kI~D~~rklhglr~~~a~l~~~n--~dvfry~ithL~k 1052 (1100)
T KOG4271|consen 985 VNVVAGAL-----KSFFACLPEPLIPYSY-----HPRLKEAMKISDRGRKLHGLREASAKLHPSN--QDVFRYVITHLNK 1052 (1100)
T ss_pred cccccCcc-----hhhhhhCCCcccCccC-----CcchhhhhhcccchhhccchhhHhhhcCchH--HHHHHHHHHHHhh
Confidence 11000000 0000111122222221 011111334778888 55 45566688888 999999999999
Q ss_pred -----------------------------HHhhhcCCCCCCCCCC
Q 002837 848 -----------------------------EQLHNLDLNYGTTSSQ 863 (875)
Q Consensus 848 -----------------------------~~~~~~d~~~~~~~~~ 863 (875)
.|+|++|++|+++...
T Consensus 1053 vs~~~k~~l~t~~~~~i~~~~~~~~~~~i~Q~q~fd~N~~s~~~~ 1097 (1100)
T KOG4271|consen 1053 VSCSPKTNLMTNNNLSICFPTLLMYEEFIQQCQFFDKNRCSSEMK 1097 (1100)
T ss_pred hcccccccccccccccccccchHHHHHHHHHhhhhhccccccccc
Confidence 9999999999976544
No 2
>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins. ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=5.4e-40 Score=337.17 Aligned_cols=192 Identities=23% Similarity=0.437 Sum_probs=175.5
Q ss_pred ccccchHHHhhhcCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcCCCCCCCCCCcchhhhhhhhhhcc
Q 002837 165 VVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKHVLRE 244 (875)
Q Consensus 165 VFGvpL~~ll~~~~~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G~~~~~~~~D~h~VAslLK~fLRe 244 (875)
+||+||..++. +..||.+|.+|+.||+++|+.+|||||++|+...+++++..+|.|.......+|+|+||++||.|||+
T Consensus 1 ~FG~~L~~~~~-~~~vP~~i~~~i~~l~~~g~~~eGiFR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~va~~lK~flre 79 (192)
T cd04402 1 LFGQPLSNICE-DDNLPKPILDMLSLLYQKGPSTEGIFRRSANAKACKELKEKLNSGVEVDLKAEPVLLLASVLKDFLRN 79 (192)
T ss_pred CCCCcHHHHhC-CCCCCHHHHHHHHHHHHhCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCCCccCCHHHHHHHHHHHHHh
Confidence 69999999999 67899999999999999999999999999999999999999999986556789999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCCCCccchhhhccccccC
Q 002837 245 LPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLR 324 (875)
Q Consensus 245 LPePLLp~~ly~~~i~~~~~~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~FaP~LLr 324 (875)
||+||||++.|+.|+.+....+.+.++..++. ++.+||..|+.+|+||+.||++|+.+++.|+||+.|||+||||+|||
T Consensus 80 LpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~-~i~~LP~~n~~~L~~l~~~L~~V~~~~~~NkM~~~nLAi~faP~l~~ 158 (192)
T cd04402 80 IPGSLLSSDLYEEWMSALDQENEEEKIAELQR-LLDKLPRPNVLLLKHLICVLHNISQNSETNKMDAFNLAVCIAPSLLW 158 (192)
T ss_pred CCCccCCHHHHHHHHHHHccCCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHhhhhccccccC
Confidence 99999999999999999988888999999998 55799999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCcc
Q 002837 325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (875)
Q Consensus 325 p~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~~~ 376 (875)
++..+ . ........+..+|++||+||+.||+++.
T Consensus 159 ~~~~~--------------~----~~~~~~~~~~~~~~~LI~~~~~IF~~~~ 192 (192)
T cd04402 159 PPASS--------------E----LQNEDLKKVTSLVQFLIENCQEIFGEDI 192 (192)
T ss_pred CCCcc--------------H----HHHHHHHhhhHHHHHHHHhHHHhCCCCC
Confidence 98321 0 1123345678999999999999999863
No 3
>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins. Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GT
Probab=100.00 E-value=1.4e-39 Score=334.53 Aligned_cols=189 Identities=20% Similarity=0.369 Sum_probs=167.7
Q ss_pred cccchHHHhhhc-CCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcC-C-CCCC--CCCCcchhhhhhhh
Q 002837 166 VGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG-K-TEFS--ADEDAHVIGDCVKH 240 (875)
Q Consensus 166 FGvpL~~ll~~~-~~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G-~-~~~~--~~~D~h~VAslLK~ 240 (875)
||+||..++++. ..||.+|.+|++||+++|+.+|||||++|+..+|+++++.|+++ . .++. ...|+|+||++||.
T Consensus 1 FG~~L~~~~~~~~~~iP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~lLK~ 80 (194)
T cd04372 1 YGCDLTTLVKAHNTQRPMVVDMCIREIEARGLQSEGLYRVSGFAEEIEDVKMAFDRDGEKADISATVYPDINVITGALKL 80 (194)
T ss_pred CCCChHHHHHHcCCCCChHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHHHcCCCCccCCcccccccHHHHHHHHHH
Confidence 999999999874 46999999999999999999999999999999999999999974 3 2332 23589999999999
Q ss_pred hhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCCCCccchhhhccc
Q 002837 241 VLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAP 320 (875)
Q Consensus 241 fLReLPePLLp~~ly~~~i~~~~~~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~FaP 320 (875)
|||+||+||||.++|+.|+.+.+..+..+++..++. ++.+||++|+.+|+||+.||++|+.|++.||||+.|||+||||
T Consensus 81 flReLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLaivf~P 159 (194)
T cd04372 81 YFRDLPIPVITYDTYPKFIDAAKISNPDERLEAVHE-ALMLLPPAHYETLRYLMEHLKRVTLHEKDNKMNAENLGIVFGP 159 (194)
T ss_pred HHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhc
Confidence 999999999999999999999998888999999998 4579999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 002837 321 LLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (875)
Q Consensus 321 ~LLrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF 372 (875)
+|+|++... ....+......+.+|++||+||+.||
T Consensus 160 ~Ll~~~~~~-----------------~~~~~~~~~~~~~iv~~LI~~~~~iF 194 (194)
T cd04372 160 TLMRPPEDS-----------------ALTTLNDMRYQILIVQLLITNEDVLF 194 (194)
T ss_pred ccCCCCCcc-----------------HHHHHHhHHHHHHHHHHHHHhhHhhC
Confidence 999987311 01223344567889999999999998
No 4
>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins. Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.8e-39 Score=335.94 Aligned_cols=197 Identities=23% Similarity=0.358 Sum_probs=174.7
Q ss_pred CcccccchHHHhhh-cCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcCCCCC---CCCCCcchhhhhh
Q 002837 163 SLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEF---SADEDAHVIGDCV 238 (875)
Q Consensus 163 ~~VFGvpL~~ll~~-~~~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G~~~~---~~~~D~h~VAslL 238 (875)
+++||+||..+++. +..||.+|.+|+.||+++|+.+|||||++|+...++.++..||.|.... ....|||+||++|
T Consensus 2 ~~~FG~~L~~~~~~~~~~iP~~v~~~i~~L~~~gl~~eGIFR~~g~~~~i~~l~~~~d~g~~~~~~~~~~~d~h~va~~l 81 (203)
T cd04386 2 KPVFGTPLEEHLKRTGREIALPIEACVMCLLETGMNEEGLFRVGGGASKLKRLKAALDAGTFSLPLDEFYSDPHAVASAL 81 (203)
T ss_pred CCcCCCCHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCcchhhccCCHHHHHHHH
Confidence 46999999999976 4679999999999999999999999999999999999999999997432 3457999999999
Q ss_pred hhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCCCCccchhhhc
Q 002837 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (875)
Q Consensus 239 K~fLReLPePLLp~~ly~~~i~~~~~~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~F 318 (875)
|.|||+||+||||.++|+.|+.+.+..+.++++..++. ++.+||+.|+.+|+||+.||++|+.|++.|+|++.|||+||
T Consensus 82 K~fLreLp~pli~~~~~~~~~~~~~~~~~~~~~~~l~~-ll~~LP~~n~~~L~~l~~~l~~v~~~~~~NkM~~~nLai~f 160 (203)
T cd04386 82 KSYLRELPDPLLTYNLYEDWVQAANKPDEDERLQAIWR-ILNKLPRENRDNLRYLIKFLSKLAQKSDENKMSPSNIAIVL 160 (203)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHccCCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHh
Confidence 99999999999999999999999988888899999998 55799999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCc
Q 002837 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDE 375 (875)
Q Consensus 319 aP~LLrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~~ 375 (875)
||+|+|++..+. . ...+.....+.+.+|++||+||+.||+++
T Consensus 161 aP~ll~~~~~~~--------------~-~~~~~~~~~~~~~iv~~LI~~~~~iF~~~ 202 (203)
T cd04386 161 APNLLWAKNEGS--------------L-AEMAAGTSVHVVAIVELIISHADWFFPGE 202 (203)
T ss_pred ccccCCCCCCCh--------------h-hhhhhhhhHHHHHHHHHHHHhHHHhCCCC
Confidence 999999874211 0 11122334568899999999999999986
No 5
>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain. ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the r
Probab=100.00 E-value=5.8e-39 Score=331.20 Aligned_cols=191 Identities=23% Similarity=0.415 Sum_probs=168.1
Q ss_pred cccccchHHHhhhc-----CCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcCCC-CCCCCCCcchhhhh
Q 002837 164 LVVGRPILLALEDI-----DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVIGDC 237 (875)
Q Consensus 164 ~VFGvpL~~ll~~~-----~~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G~~-~~~~~~D~h~VAsl 237 (875)
.|||+||++++... ..||.+|.+|+.||+++|+.+|||||++|+...++++++.|+.|.. .+....|+|+||++
T Consensus 1 ~iFG~~L~~~~~~~~~~~~~~iP~~i~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~~d~h~va~l 80 (199)
T cd04390 1 GVFGQRLEDTVAYERKFGPRLVPILVEQCVDFIREHGLKEEGLFRLPGQANLVKQLQDAFDAGERPSFDSDTDVHTVASL 80 (199)
T ss_pred CcCCccHHHHHHHhcccCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHHHHhCCCCCCccccCCHHHHHHH
Confidence 38999999998642 3499999999999999999999999999999999999999999964 34457899999999
Q ss_pred hhhhhccCCCCCCChhhHHHHHHHHhc--CCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCCCCccchh
Q 002837 238 VKHVLRELPSSPVPASCCTALLEAYKI--DRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVA 315 (875)
Q Consensus 238 LK~fLReLPePLLp~~ly~~~i~~~~~--~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLA 315 (875)
||.|||+||+||||+++|+.|+.+.+. .+.+.++..++. ++..||+.|+.+|+||+.||++|+.|++.||||+.|||
T Consensus 81 LK~fLReLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~l~~-~l~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA 159 (199)
T cd04390 81 LKLYLRELPEPVIPWAQYEDFLSCAQLLSKDEEKGLGELMK-QVSILPKVNYNLLSYICRFLDEVQSNSSVNKMSVQNLA 159 (199)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHhccCccHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHH
Confidence 999999999999999999999988764 345677888988 55799999999999999999999999999999999999
Q ss_pred hhccccccCCCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 002837 316 ACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (875)
Q Consensus 316 i~FaP~LLrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF 372 (875)
+||||+|||++.. + ..+.+..+..++.+|++||+||+.||
T Consensus 160 ivf~P~llr~~~~------~-----------~~~~~~~~~~~~~~~~~lI~~~~~~F 199 (199)
T cd04390 160 TVFGPNILRPKVE------D-----------PATIMEGTPQIQQLMTVMISKHEPLF 199 (199)
T ss_pred HHhccccCCCCCC------C-----------HHHHHhccHHHHHHHHHHHHhhhhcC
Confidence 9999999998732 2 12234455677899999999999998
No 6
>cd04391 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins. The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=8.1e-39 Score=334.19 Aligned_cols=200 Identities=25% Similarity=0.331 Sum_probs=175.6
Q ss_pred ccccchHHHhhhc------CCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcCC---CCCCCCCCcchhh
Q 002837 165 VVGRPILLALEDI------DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK---TEFSADEDAHVIG 235 (875)
Q Consensus 165 VFGvpL~~ll~~~------~~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G~---~~~~~~~D~h~VA 235 (875)
|||+||+.++.+. ..||.+|.+|+.||+++|+.+|||||++|+..+|+.++..++.+. .......|+|+||
T Consensus 1 vFGv~L~~l~~~~~~~~~~~~iP~~l~~~i~~l~~~gl~~EGIFR~~G~~~~i~~l~~~ld~~~~~~~~~~~~~~~h~va 80 (216)
T cd04391 1 LFGVPLSTLLERDQKKVPGSKVPLIFQKLINKLEERGLETEGILRIPGSAQRVKFLCQELEAKFYEGTFLWDQVKQHDAA 80 (216)
T ss_pred CCCCCHHHHHHHhcccCCCCCCCcHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHHHhcccccCccccccCCHHHHH
Confidence 7999999999763 469999999999999999999999999999999999999999863 2234568999999
Q ss_pred hhhhhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCCCCccchh
Q 002837 236 DCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVA 315 (875)
Q Consensus 236 slLK~fLReLPePLLp~~ly~~~i~~~~~~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLA 315 (875)
++||.|||+||+||||.++|+.|+.+....+.++++.+++. ++.+||+.|+.+|+||+.||++|+.|++.||||+.|||
T Consensus 81 ~lLK~flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~l~~-li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA 159 (216)
T cd04391 81 SLLKLFIRELPQPLLTVEYLPAFYSVQGLPSKKDQLQALNL-LVLLLPEANRDTLKALLEFLQKVVDHEEKNKMNLWNVA 159 (216)
T ss_pred HHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHccccCCCChHHHH
Confidence 99999999999999999999999999888888889999998 55799999999999999999999999999999999999
Q ss_pred hhccccccCCCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCcc
Q 002837 316 ACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (875)
Q Consensus 316 i~FaP~LLrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~~~ 376 (875)
+||||+||++...+.. +.......+..+..++.+|++||+|++.||..+.
T Consensus 160 ivfaP~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~iv~~lI~~~~~if~~p~ 209 (216)
T cd04391 160 MIMAPNLFPPRGKHSK-----------DNESLQEEVNMAAGCANIMRLLIRYQDLLWTVPS 209 (216)
T ss_pred HHhccccCCCCCCCCC-----------cchhHHHHHHHHHHHHHHHHHHHHhHHHHhcCCH
Confidence 9999999998743211 1122344556667788999999999999999765
No 7
>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=100.00 E-value=1.4e-38 Score=325.36 Aligned_cols=185 Identities=25% Similarity=0.352 Sum_probs=167.0
Q ss_pred cccchHHHhhhcCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcCC-CCCCCCCCcchhhhhhhhhhcc
Q 002837 166 VGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLRE 244 (875)
Q Consensus 166 FGvpL~~ll~~~~~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G~-~~~~~~~D~h~VAslLK~fLRe 244 (875)
||+||+.++.+...||.+|.+|++||+++|+.+|||||++|+..+++.+++.|+.|. ......+|+|+||++||.|||+
T Consensus 1 FGv~L~~~~~~~~~vP~il~~~i~~l~~~gl~~EGIfR~~Gs~~~i~~l~~~~~~~~~~~~~~~~d~h~va~lLK~flRe 80 (186)
T cd04407 1 FGVRVGSLTSNKTSVPIVLEKLLEHVEMHGLYTEGIYRKSGSANRMKELHQLLQADPENVKLENYPIHAITGLLKQWLRE 80 (186)
T ss_pred CCCcHHHHHhCCCCCCcHHHHHHHHHHHcCCCCCceeecCCCHHHHHHHHHHHhcCCcccCcccCCHHHHHHHHHHHHHh
Confidence 999999999888899999999999999999999999999999999999999999985 3334678999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCCCCccchhhhccccccC
Q 002837 245 LPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLR 324 (875)
Q Consensus 245 LPePLLp~~ly~~~i~~~~~~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~FaP~LLr 324 (875)
||+||||+++|+.|+.+.+..+..+++..++. ++.+||++|+.+|++|+.||++|+.|++.|||++.|||+||||+|||
T Consensus 81 LPepLi~~~~~~~~~~~~~~~~~~~~~~~l~~-ll~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivfaP~Ll~ 159 (186)
T cd04407 81 LPEPLMTFAQYNDFLRAVELPEKQEQLQAIYR-VLEQLPTANHNTLERLIFHLVKVALEEDVNRMSPNALAIVFAPCLLR 159 (186)
T ss_pred CCCccCCHHHHHHHHHHHHCCCHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHHHHhccccCCCChhHHHHhhhccccC
Confidence 99999999999999999988888889999998 55899999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 002837 325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (875)
Q Consensus 325 p~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIen 367 (875)
++... + .+..+....++..+|++||+.
T Consensus 160 ~~~~~-----d-----------~~~~~~~~~~~~~~v~~li~~ 186 (186)
T cd04407 160 CPDSS-----D-----------PLTSMKDVAKTTTCVEMLIKE 186 (186)
T ss_pred CCCCC-----C-----------HHHHHHhhhhhHHHHHHHhhC
Confidence 86321 1 123455667888999999973
No 8
>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin. RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low int
Probab=100.00 E-value=1.1e-38 Score=325.02 Aligned_cols=176 Identities=22% Similarity=0.358 Sum_probs=165.2
Q ss_pred cccchHHHhhhc-----CCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcCCCCCCCCCCcchhhhhhhh
Q 002837 166 VGRPILLALEDI-----DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKH 240 (875)
Q Consensus 166 FGvpL~~ll~~~-----~~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G~~~~~~~~D~h~VAslLK~ 240 (875)
||+||..++++. ..||.+|.+|+.||+++|+.+|||||++|+..+|+++++.|++|......++|+|+||++||.
T Consensus 1 FGv~L~~~~~~~~~~~g~~iP~~v~~~i~~l~~~gl~~EGIfR~~G~~~~i~~l~~~~~~~~~~~~~~~d~h~va~lLK~ 80 (182)
T cd04381 1 FGASLSLAVERSRCHDGIDLPLVFRECIDYVEKHGMKCEGIYKVSGIKSKVDELKAAYNRRESPNLEEYEPPTVASLLKQ 80 (182)
T ss_pred CCCCHHHHHHhhccCCCCcCChHHHHHHHHHHHhCCCCCceeecCCcHHHHHHHHHHHcCCCCCCccccChHHHHHHHHH
Confidence 999999998763 359999999999999999999999999999999999999999997666667899999999999
Q ss_pred hhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCCCCccchhhhccc
Q 002837 241 VLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAP 320 (875)
Q Consensus 241 fLReLPePLLp~~ly~~~i~~~~~~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~FaP 320 (875)
|||+||+||||.++|+.|+++....+..+++..++. ++.+||+.|+.+|+||+.||++|+.|++.|||++.|||+||||
T Consensus 81 fLReLP~pLi~~~~~~~~~~~~~~~~~~~r~~~l~~-li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP 159 (182)
T cd04381 81 YLRELPEPLLTKELMPRFEEACGRPTEAEREQELQR-LLKELPECNRLLLAWLIVHMDHVIAQELETKMNIQNISIVLSP 159 (182)
T ss_pred HHHhCCCccCCHHHHHHHHHHcCCCCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHHHHhCc
Confidence 999999999999999999999988888999999998 5679999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 002837 321 LLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDD 374 (875)
Q Consensus 321 ~LLrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~ 374 (875)
+|+.+. .++..||+||+.||++
T Consensus 160 ~l~~~~--------------------------------~~~~~li~~~~~if~~ 181 (182)
T cd04381 160 TVQISN--------------------------------RLLYALLTHCQELFGN 181 (182)
T ss_pred cccCcH--------------------------------HHHHHHHHHHHHHcCC
Confidence 998642 6799999999999986
No 9
>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.6e-38 Score=332.66 Aligned_cols=209 Identities=21% Similarity=0.346 Sum_probs=173.9
Q ss_pred CcccccchHHHhhh-cCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcCC-CCCCCCCCcchhhhhhhh
Q 002837 163 SLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKH 240 (875)
Q Consensus 163 ~~VFGvpL~~ll~~-~~~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G~-~~~~~~~D~h~VAslLK~ 240 (875)
+.|||+||..++++ +..||.+|.+|+.||+.+|+.+|||||++|+..+|+.|++.++.+. .......++|+||++||.
T Consensus 2 ~~vFGvpL~~~~~r~g~~IP~~i~~~i~~L~~~gl~~eGIFR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~~va~lLK~ 81 (220)
T cd04375 2 KNVFGVPLLVNLQRTGQPLPRSIQQAMRWLRNNALDQVGLFRKSGVKSRIQKLRSMIESSTDNVNYDGQQAYDVADMLKQ 81 (220)
T ss_pred CCEecCcHHHHHhhcCCCCChHHHHHHHHHHHhCCCccceeecCCcHHHHHHHHHHHhcCCCccCcccccHHHHHHHHHH
Confidence 46999999988876 4679999999999999999999999999999999999999999863 444567899999999999
Q ss_pred hhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCCCCccchhhhccc
Q 002837 241 VLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAP 320 (875)
Q Consensus 241 fLReLPePLLp~~ly~~~i~~~~~~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~FaP 320 (875)
|||+||+||||+++|+.|+.+.+..+.++++.+++.+ +..||++|+.+|++|+.||++|+.|++.|||++.|||+||||
T Consensus 82 flReLPePLlt~~l~~~fi~~~~~~~~~~~~~~l~~~-i~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP 160 (220)
T cd04375 82 YFRDLPEPLLTNKLSETFIAIFQYVPKEQRLEAVQCA-ILLLPDENREVLQTLLYFLSDVAANSQENQMTATNLAVCLAP 160 (220)
T ss_pred HHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHhh
Confidence 9999999999999999999998888888999999984 569999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCccc---cc--ccCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCc
Q 002837 321 LLLRPLLAGECELED---DF--DMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDE 375 (875)
Q Consensus 321 ~LLrp~~~~~~~led---~~--~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~~ 375 (875)
+||+........+-. -+ ...|... ...+.....+..+|.+||+||+.||.-.
T Consensus 161 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~e~~~~~~~v~~lI~~~~~lf~vp 217 (220)
T cd04375 161 SLFHLNTSRRENSSPARRMQRKKSLGKPD---QKELSENKAAHQCLAYMIEECNTLFMVP 217 (220)
T ss_pred hhcCCCCCCcccccchhhhccccccCCCc---HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999986432111000 00 0001111 1123334456788999999999999754
No 10
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=100.00 E-value=7.8e-37 Score=340.07 Aligned_cols=305 Identities=23% Similarity=0.343 Sum_probs=243.6
Q ss_pred CCCCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCC--CCCCceeeeeeCceEeCCCcceeeccCCceeE
Q 002837 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSAL--PQRGGEVNLTLGGIDLNNSGSVVVREDKKLLT 91 (875)
Q Consensus 14 ~~s~~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~--p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~f 91 (875)
..+....++||||++.|....++|.|+||+..+.+-.|-..+-+.+ .+.+...++.+..|.-....+ .+|+|||
T Consensus 260 k~p~p~t~eGYlY~QEK~~~g~sWvKyYC~Y~retk~~TMvp~~qk~g~k~g~~~~~~lKsC~RRktdS----IdKRFCF 335 (812)
T KOG1451|consen 260 KRPTPSTKEGYLYMQEKSKIGKSWVKYYCVYSRETKIFTMVPANQKTGTKMGQTATFKLKSCSRRKTDS----IDKRFCF 335 (812)
T ss_pred cCCCCcccceeeeehhhhhccchhhhheeEeecccceEEEeecccCCCCcCCCcceEEehhhccCcccc----cccceee
Confidence 3445678999999999998889999999999886544443333322 233445556666665555444 5899999
Q ss_pred EEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHhhCCcchhccCCcccccCCCCccccCccccccCCCCCCCcccc-cch
Q 002837 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAALVMGHNGIFRNDTNDTIEGSFHQWRDKRPVKSLVVG-RPI 170 (875)
Q Consensus 92 iIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~~aP~~a~~~g~~~if~~~~~~~~~~s~~~~k~k~~~k~~VFG-vpL 170 (875)
.|....+.| +.++||-+++++..||.|+..+ .+++.+...-. -.| ..|
T Consensus 336 Dve~~erpg-viTmQALSE~drrlWmeAMDG~-------------ep~Y~s~~~~~-----------------~~~~~qL 384 (812)
T KOG1451|consen 336 DVEVEERPG-VITMQALSEKDRRLWMEAMDGA-------------EPSYTSGENCS-----------------TYKQTQL 384 (812)
T ss_pred eeeecccCC-eeehHhhhhhHHHHHHHHhcCC-------------CccccCccccc-----------------hhhhhhh
Confidence 998765554 7999999999999999998644 22222221100 000 011
Q ss_pred HHHhhhcCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhc-C---CCC--CCCCCCcchhhhhhhhhhcc
Q 002837 171 LLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQ-G---KTE--FSADEDAHVIGDCVKHVLRE 244 (875)
Q Consensus 171 ~~ll~~~~~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~-G---~~~--~~~~~D~h~VAslLK~fLRe 244 (875)
.++ -=.||.+||.+|+..|++++|+||..|...+|++|...+-. . +.+ ...+||+-+|++.||.|||.
T Consensus 385 d~i------GF~fvrkCI~i~Et~GI~eqGlYR~vGvns~VQKlln~~fDPK~ase~d~dn~~eWeiKTITSaLKtYLRn 458 (812)
T KOG1451|consen 385 DDI------GFEFVRKCIDILETSGIHEQGLYRNVGVNSKVQKLLNLGFDPKKASEKDGDNLDEWEIKTITSALKTYLRN 458 (812)
T ss_pred hhh------hHHHHHHHHHHHHhcCcccccchhhccchHHHHHHHHhcCCCCCccccccchhhhhhhhhHHHHHHHHHHh
Confidence 111 24589999999999999999999999999999999886533 2 222 23578999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCCCCccchhhhccccccC
Q 002837 245 LPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLR 324 (875)
Q Consensus 245 LPePLLp~~ly~~~i~~~~~~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~FaP~LLr 324 (875)
||+||+++.++..|+.+.+..+.+.|+.+|+. ++.+||.-||.+|..||.||.+|+.|+.+|.||..||++||||+|||
T Consensus 459 LpEPLMTY~LHk~FI~AAKsdnq~yRv~aIHs-LVHkLPEKNReMLelLirHLvnVa~hSkeNLMTVSNLGViFGPTLlR 537 (812)
T KOG1451|consen 459 LPEPLMTYELHKVFINAAKSDNQTYRVDAIHS-LVHKLPEKNREMLELLIRHLVNVADHSKENLMTVSNLGVIFGPTLLR 537 (812)
T ss_pred CCchhhHHHHHHHHHHHHhccchhhhHHHHHH-HHHhccHhhHHHHHHHHHHHHHHHhhhhcccccccccceeecccccC
Confidence 99999999999999999999999999999998 55799999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCcccc
Q 002837 325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESLH 378 (875)
Q Consensus 325 p~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~~~~~ 378 (875)
+.. .+++|+|.++.++-||+.||+||+.||...+..
T Consensus 538 pQE------------------ETVAAiMdIKFQNIVVEILIEnyeKIF~t~Pd~ 573 (812)
T KOG1451|consen 538 PQE------------------ETVAAIMDIKFQNIVVEILIENYEKIFKTKPDS 573 (812)
T ss_pred chH------------------HHHHHHHcchhhhhhHHHHHhhhHHHhcCCCCc
Confidence 972 368899999999999999999999999987643
No 11
>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA. CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2e-38 Score=326.45 Aligned_cols=190 Identities=22% Similarity=0.306 Sum_probs=165.9
Q ss_pred cccccchHHHhhh-cCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcCCCCCC----CCCCcchhhhhh
Q 002837 164 LVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFS----ADEDAHVIGDCV 238 (875)
Q Consensus 164 ~VFGvpL~~ll~~-~~~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G~~~~~----~~~D~h~VAslL 238 (875)
+|||+||..++.+ +..||.+|.+|++||+++|+ +|||||++|+..+++++++.||+|..... ...|+|+||++|
T Consensus 1 ~vFG~~L~~~~~~~g~~iP~il~~~i~~l~~~g~-~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~lL 79 (195)
T cd04384 1 RVFGCDLTEHLLNSGQDVPQVLKSCTEFIEKHGI-VDGIYRLSGIASNIQRLRHEFDSEQIPDLTKDVYIQDIHSVSSLC 79 (195)
T ss_pred CcCCccHHHHHHHcCCCCChHHHHHHHHHHHcCC-CcCeeeCCCCHHHHHHHHHHHcCCCCCCcccccccccHHHHHHHH
Confidence 4899999999876 46899999999999999999 69999999999999999999999963322 346999999999
Q ss_pred hhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCCCCccchhhhc
Q 002837 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (875)
Q Consensus 239 K~fLReLPePLLp~~ly~~~i~~~~~~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~F 318 (875)
|.|||+||+||||+++|+.|+++....+.++++..++. ++.+||+.|+.+|+||+.||++|+.|++.||||+.|||+||
T Consensus 80 K~flReLPePLi~~~~y~~~~~~~~~~~~~~~~~~l~~-li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf 158 (195)
T cd04384 80 KLYFRELPNPLLTYQLYEKFSEAVSAASDEERLEKIHD-VIQQLPPPHYRTLEFLMRHLSRLAKYCSITNMHAKNLAIVW 158 (195)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHhhHhh
Confidence 99999999999999999999999998888999999998 55799999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 002837 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (875)
Q Consensus 319 aP~LLrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIen 367 (875)
||+|||++...+. ..+-.++.+....++.+|+|||+|
T Consensus 159 ~P~L~~~~~~~~~------------~~~~~~~~~~~~~q~~v~~~~~~~ 195 (195)
T cd04384 159 APNLLRSKQIESA------------CFSGTAAFMEVRIQSVVVEFILNH 195 (195)
T ss_pred hhhcCCCCccccc------------cchHHHHHHHHhhhhhheehhhcC
Confidence 9999998732110 011134455666778899999986
No 12
>cd04397 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins. Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.6e-38 Score=329.71 Aligned_cols=192 Identities=18% Similarity=0.327 Sum_probs=168.0
Q ss_pred cccchHHHhhhcC------------CCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcCCCC--CCCCCCc
Q 002837 166 VGRPILLALEDID------------GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE--FSADEDA 231 (875)
Q Consensus 166 FGvpL~~ll~~~~------------~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G~~~--~~~~~D~ 231 (875)
||+||..++++.+ .||.+|.+|+.||+++|+.+|||||++|+..+++.++..|+.|... .....++
T Consensus 1 FGv~L~~l~~~~~~~~~~~~~~~~~~IP~~l~~~i~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~d~~~~~~ 80 (213)
T cd04397 1 FGVPLEILVEKFGADSTLGVGPGKLRIPALIDDIISAMRQMDMSVEGVFRKNGNIRRLKELTEEIDKNPTEVPDLSKENP 80 (213)
T ss_pred CCCCHHHHHHHhCcccccccCCCCCCCCHHHHHHHHHHHHcCCCcCCeeeecchHHHHHHHHHHHhcCCCcccccccCcH
Confidence 9999999998742 3999999999999999999999999999999999999999998532 3456899
Q ss_pred chhhhhhhhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcC-----C
Q 002837 232 HVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAH-----E 306 (875)
Q Consensus 232 h~VAslLK~fLReLPePLLp~~ly~~~i~~~~~~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~-----~ 306 (875)
|+||++||.|||+||+||||+++|+.|+.+.+..+.++++..++. ++.+||+.|+.+|++|+.||++|+.+++ .
T Consensus 81 ~~va~lLK~flReLPepLi~~~~y~~~i~~~~~~~~~~~~~~l~~-l~~~LP~~n~~~L~~L~~~L~~V~~~s~i~~~~~ 159 (213)
T cd04397 81 VQLAALLKKFLRELPDPLLTFKLYRLWISSQKIEDEEERKRVLHL-VYCLLPKYHRDTMEVLFSFLKWVSSFSHIDEETG 159 (213)
T ss_pred HHHHHHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHhhhhcccCC
Confidence 999999999999999999999999999999998888888888887 5679999999999999999999998765 5
Q ss_pred CCCCccchhhhccccccCCCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCcc
Q 002837 307 NRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (875)
Q Consensus 307 NKMta~NLAi~FaP~LLrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~~~ 376 (875)
|||++.|||+||||+|||++..... .+........+|++||+||+.||....
T Consensus 160 NkM~~~NLAivf~P~Ll~~~~~~~~------------------~~~~~~~~~~vv~~LI~n~~~if~vp~ 211 (213)
T cd04397 160 SKMDIHNLATVITPNILYSKTDNPN------------------TGDEYFLAIEAVNYLIENNEEFCEVPD 211 (213)
T ss_pred CcCChHHhHHhhcccccCCCCCCcc------------------hHHHHHHHHHHHHHHHHhHHHHhcCCC
Confidence 9999999999999999998742210 111223456899999999999998754
No 13
>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3). It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.8e-38 Score=323.32 Aligned_cols=190 Identities=26% Similarity=0.426 Sum_probs=168.6
Q ss_pred CCcccccchHHHhhhc---CCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcCCCCCCCC-CCcchhhhh
Q 002837 162 KSLVVGRPILLALEDI---DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSAD-EDAHVIGDC 237 (875)
Q Consensus 162 k~~VFGvpL~~ll~~~---~~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G~~~~~~~-~D~h~VAsl 237 (875)
++.+||+||+.++.+. ..||.+|.+|+.||+++|+++|||||++|+..+++.+++.+|.|....... .|+|+||++
T Consensus 2 ~~~~FGv~L~~~~~~~~~~~~iP~il~~~i~~l~~~g~~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~~ 81 (195)
T cd04404 2 PTQQFGVSLQFLKEKNPEQEPIPPVVRETVEYLQAHALTTEGIFRRSANTQVVKEVQQKYNMGEPVDFDQYEDVHLPAVI 81 (195)
T ss_pred CCCcCCCcHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCCcccccCHHHHHHH
Confidence 5789999999999763 579999999999999999999999999999999999999999996433334 499999999
Q ss_pred hhhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCCCCccchhhh
Q 002837 238 VKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAAC 317 (875)
Q Consensus 238 LK~fLReLPePLLp~~ly~~~i~~~~~~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~ 317 (875)
||.|||+||+||||.+.|+.|+.+.+.. ..+++..++. ++.+||+.|+.+|.+|+.||++|+.|++.|+|++.|||+|
T Consensus 82 LK~~lr~Lp~pLi~~~~~~~l~~~~~~~-~~~~~~~~~~-~i~~LP~~n~~~L~~L~~~l~~i~~~s~~NkM~~~nLa~v 159 (195)
T cd04404 82 LKTFLRELPEPLLTFDLYDDIVGFLNVD-KEERVERVKQ-LLQTLPEENYQVLKYLIKFLVQVSAHSDQNKMTNSNLAVV 159 (195)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHcCC-HHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHhHhhee
Confidence 9999999999999999999999987654 6778899998 5579999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 002837 318 MAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (875)
Q Consensus 318 FaP~LLrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF 372 (875)
|||+|+|++.. .. .+.....++.+|++||+||+.||
T Consensus 160 faP~l~~~~~~-~~------------------~l~~~~~~~~~~~~LI~~~~~iF 195 (195)
T cd04404 160 FGPNLLWAKDA-SM------------------SLSAINPINTFTKFLLDHQDEIF 195 (195)
T ss_pred eeccccCCCCc-cc------------------CHHHHHHHHHHHHHHHHhHHhhC
Confidence 99999998732 10 12345667889999999999998
No 14
>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=9.1e-38 Score=321.62 Aligned_cols=190 Identities=20% Similarity=0.366 Sum_probs=168.8
Q ss_pred ccccchHHHhhhc--CCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcCCCCC----CCCCCcchhhhhh
Q 002837 165 VVGRPILLALEDI--DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEF----SADEDAHVIGDCV 238 (875)
Q Consensus 165 VFGvpL~~ll~~~--~~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G~~~~----~~~~D~h~VAslL 238 (875)
+||+||+..+... ..||.+|.+|+.||+++|+.+|||||++|+..+++++++.+|+|.... ....|+|+||++|
T Consensus 1 ~FGvpl~~~~~~~~~~~vP~iv~~~~~~l~~~g~~~eGIFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~d~~~va~ll 80 (196)
T cd04395 1 TFGVPLDDCPPSSENPYVPLIVEVCCNIVEARGLETVGIYRVPGNNAAISALQEELNRGGFDIDLQDPRWRDVNVVSSLL 80 (196)
T ss_pred CCCccHHHHhcccCCCCCChHHHHHHHHHHHcCCCCccceeCCCcHHHHHHHHHHHhcCCCCcCccccccccHHHHHHHH
Confidence 5999999887653 569999999999999999999999999999999999999999996432 2347999999999
Q ss_pred hhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCCCCccchhhhc
Q 002837 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (875)
Q Consensus 239 K~fLReLPePLLp~~ly~~~i~~~~~~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~F 318 (875)
|.|||+||+||||.++|+.|+.+.+..+..+++..++. ++.+||+.|+.+|.||+.||++|+.|++.|+|++.|||+||
T Consensus 81 K~flr~Lp~pli~~~~~~~~i~~~~~~~~~~~i~~l~~-~i~~LP~~n~~~L~~l~~~L~~v~~~~~~NkM~~~nLAi~f 159 (196)
T cd04395 81 KSFFRKLPEPLFTNELYPDFIEANRIEDPVERLKELRR-LIHSLPDHHYETLKHLIRHLKTVADNSEVNKMEPRNLAIVF 159 (196)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHhhccccccccchHHhh
Confidence 99999999999999999999999988888999999998 55799999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 002837 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (875)
Q Consensus 319 aP~LLrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF 372 (875)
||+|+|++..+ ...........+.+|+.||+||+.||
T Consensus 160 aP~l~r~~~~~-----------------~~~~~~~~~~~~~ii~~LI~~~d~~f 196 (196)
T cd04395 160 GPTLVRTSDDN-----------------METMVTHMPDQCKIVETLIQHYDWFF 196 (196)
T ss_pred ccccCCCCCCC-----------------HHHHHHhHHHHHHHHHHHHHhCcccC
Confidence 99999987321 11223344556799999999999998
No 15
>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs. srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific group
Probab=100.00 E-value=4.9e-38 Score=321.77 Aligned_cols=184 Identities=21% Similarity=0.396 Sum_probs=164.9
Q ss_pred cccccchHHHhhh-cCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcCCCCC---CCCCCcchhhhhhh
Q 002837 164 LVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEF---SADEDAHVIGDCVK 239 (875)
Q Consensus 164 ~VFGvpL~~ll~~-~~~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G~~~~---~~~~D~h~VAslLK 239 (875)
++||++|+.+++. +..||.+|.+|++||+++|+.+|||||++|+..+++.+++.|++|...+ ....|+|+||++||
T Consensus 1 k~FG~~L~~~~~~~~~~IP~~v~~~i~~l~~~gl~~EGIFRv~G~~~~i~~l~~~~d~g~~~~~~~~~~~d~~~va~lLK 80 (188)
T cd04383 1 KLFNGSLEEYIQDSGQAIPLVVESCIRFINLYGLQHQGIFRVSGSQVEVNDIKNAFERGEDPLADDQNDHDINSVAGVLK 80 (188)
T ss_pred CcCCccHHHHHHHCCCCCChHHHHHHHHHHHcCCCCCCeeecCCCHHHHHHHHHHHhcCCCccccccccccHHHHHHHHH
Confidence 4899999999976 4679999999999999999999999999999999999999999986432 34689999999999
Q ss_pred hhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCCCCccchhhhcc
Q 002837 240 HVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMA 319 (875)
Q Consensus 240 ~fLReLPePLLp~~ly~~~i~~~~~~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~Fa 319 (875)
.|||+||+||||.++|+.|+.+.+..+..+++..++. ++.+||++|+.+|+||+.||++|++|++.||||+.|||+|||
T Consensus 81 ~fLReLPepLip~~~~~~~~~~~~~~~~~~~~~~l~~-ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~ 159 (188)
T cd04383 81 LYFRGLENPLFPKERFEDLMSCVKLENPTERVHQIRE-ILSTLPRSVIIVMRYLFAFLNHLSQFSDENMMDPYNLAICFG 159 (188)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHHHhhCCCcccceeeee
Confidence 9999999999999999999999999888899999998 557999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 002837 320 PLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (875)
Q Consensus 320 P~LLrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIen 367 (875)
|+|+|.+... +.+....+++.|++.||.|
T Consensus 160 P~L~~~p~~~-------------------~~~~~~~~~~~~~~~li~~ 188 (188)
T cd04383 160 PTLMPVPEGQ-------------------DQVSCQAHVNELIKTIIIH 188 (188)
T ss_pred ccccCCCCCc-------------------cHHHHHHHHHHHHHHHhcC
Confidence 9999987311 1133346788899999865
No 16
>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains. Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=9.9e-38 Score=319.19 Aligned_cols=183 Identities=27% Similarity=0.415 Sum_probs=162.9
Q ss_pred cccchHHHhhh-cCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcCCCC-C--CCCCCcchhhhhhhhh
Q 002837 166 VGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE-F--SADEDAHVIGDCVKHV 241 (875)
Q Consensus 166 FGvpL~~ll~~-~~~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G~~~-~--~~~~D~h~VAslLK~f 241 (875)
||+||..++++ +..||.+|.+|+.||+.+|+.+|||||++|+...+++++..+|.|... + ....|+|+||++||.|
T Consensus 1 FGv~L~~~~~~~~~~iP~~l~~~i~~l~~~gl~~eGIFR~sg~~~~v~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK~f 80 (187)
T cd04403 1 FGCHLEALCQRENSTVPKFVRLCIEAVEKRGLDVDGIYRVSGNLAVIQKLRFAVDHDEKLDLDDSKWEDIHVITGALKLF 80 (187)
T ss_pred CCCChHHHHHHcCCCCChHHHHHHHHHHHhCCCcCceeeecCcHHHHHHHHHHhcCCCCCCccccccccHHHHHHHHHHH
Confidence 99999999986 456999999999999999999999999999999999999999998632 2 3457999999999999
Q ss_pred hccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCCCCccchhhhcccc
Q 002837 242 LRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPL 321 (875)
Q Consensus 242 LReLPePLLp~~ly~~~i~~~~~~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~FaP~ 321 (875)
||+||+||||+++|+.|+.+.+..+..+++..++. ++.+||++|+.+|+||+.||++|+.+++.||||+.|||+||||+
T Consensus 81 LReLPepLi~~~~~~~~~~~~~~~~~~~~i~~l~~-ll~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLAivf~P~ 159 (187)
T cd04403 81 FRELPEPLFPYSLFNDFVAAIKLSDYEQRVSAVKD-LIKSLPKPNHDTLKMLFRHLCRVIEHGEKNRMTTQNLAIVFGPT 159 (187)
T ss_pred HhcCCCCcCCHHHHHHHHHHHHCCCHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHHHHhccccccCChHHhhhhcccc
Confidence 99999999999999999999999988999999998 55799999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 002837 322 LLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (875)
Q Consensus 322 LLrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIen 367 (875)
|||++... . ..+.....++.+|++||++
T Consensus 160 ll~~~~~~-------------~-----~~~~~~~~~~~~ve~l~~~ 187 (187)
T cd04403 160 LLRPEQET-------------G-----NIAVHMVYQNQIVELILLE 187 (187)
T ss_pred ccCCCCcc-------------h-----HHHHHhHHHHHHHHHHhhC
Confidence 99987321 0 1112334677999999975
No 17
>cd04408 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.3e-37 Score=321.63 Aligned_cols=186 Identities=21% Similarity=0.354 Sum_probs=163.0
Q ss_pred cccchHHHhhh-cCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcCCC-CCCCCCCcchhhhhhhhhhc
Q 002837 166 VGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVIGDCVKHVLR 243 (875)
Q Consensus 166 FGvpL~~ll~~-~~~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G~~-~~~~~~D~h~VAslLK~fLR 243 (875)
||+||..++++ ++.||.+|.+|++||+++|+.+|||||++|+..+++++++.|++|.. ......|||+||++||.|||
T Consensus 1 FGv~l~~l~~~~~~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~lLK~fLR 80 (200)
T cd04408 1 FGVDFSQLPRDFPEEVPFVVVRCTAEIENRALGVQGIYRISGSKARVEKLCQAFENGRDLVDLSGHSPHDITSVLKHFLK 80 (200)
T ss_pred CCCCHHHHHHhCCCCCChHHHHHHHHHHHcCCCCcceeeCCCcHHHHHHHHHHHhcCCCccCcccCCHHHHHHHHHHHHH
Confidence 99999999886 57799999999999999999999999999999999999999999863 33457899999999999999
Q ss_pred cCCCCCCChhhHHHHHHHHhcC------------CHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCCCCc
Q 002837 244 ELPSSPVPASCCTALLEAYKID------------RKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTP 311 (875)
Q Consensus 244 eLPePLLp~~ly~~~i~~~~~~------------~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta 311 (875)
+||+||||+++|+.|+.+.+.. ...+++..++. ++..||++|+.||+||+.||++|+.+++.|||++
T Consensus 81 eLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lk~-li~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~ 159 (200)
T cd04408 81 ELPEPVLPFQLYDDFIALAKELQRDSEKAAESPSIVENIIRSLKE-LLGRLPVSNYNTLRHLMAHLYRVAERFEDNKMSP 159 (200)
T ss_pred hCCCccCCHHHHHHHHHHHHHhcccccccccccccHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHhhhccCCCH
Confidence 9999999999999999876531 24578999998 5579999999999999999999999999999999
Q ss_pred cchhhhccccccCCCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 002837 312 SAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (875)
Q Consensus 312 ~NLAi~FaP~LLrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIen 367 (875)
.|||+||||+|||++..... .+.++......+.+|++||.|
T Consensus 160 ~NLAivf~P~Ll~~~~~~~~---------------~~~~~~~~~~q~~~ve~li~~ 200 (200)
T cd04408 160 NNLGIVFGPTLLRPLVGGDV---------------SMICLLDTGYQAQLVEFLISN 200 (200)
T ss_pred hHhhhhhccccCCCCCCCch---------------HHHHHhccchHHHHHHHHhhC
Confidence 99999999999999843211 123445567778999999986
No 18
>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolife
Probab=100.00 E-value=1.3e-37 Score=318.12 Aligned_cols=184 Identities=20% Similarity=0.330 Sum_probs=164.3
Q ss_pred cccchHHHhhhcCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcCC-CCCCCCCCcchhhhhhhhhhcc
Q 002837 166 VGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLRE 244 (875)
Q Consensus 166 FGvpL~~ll~~~~~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G~-~~~~~~~D~h~VAslLK~fLRe 244 (875)
||+||+.++..+..||.+|.+|++||+.+|+.+|||||++|+..+|+.+++.|+.|. ......+|+|+||++||.|||+
T Consensus 1 FGv~L~~l~~~~~~iP~ii~~~i~~l~~~gl~~EGIFR~sGs~~~i~~l~~~~d~~~~~~~~~~~d~h~va~lLK~fLRe 80 (186)
T cd04406 1 FGVELSRLTSEDRSVPLVVEKLINYIEMHGLYTEGIYRKSGSTNKIKELRQGLDTDANSVNLDDYNIHVIASVFKQWLRD 80 (186)
T ss_pred CCCchHHHHHCCCCCCcHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHccCCCCCCcccCCHHHHHHHHHHHHHh
Confidence 999999999877889999999999999999999999999999999999999999875 3345678999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCCCCccchhhhccccccC
Q 002837 245 LPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLR 324 (875)
Q Consensus 245 LPePLLp~~ly~~~i~~~~~~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~FaP~LLr 324 (875)
||+||||+++|+.|+.+....+..+++..++. ++..||+.|+.+|++|+.||++|+.|++.|||++.|||+||||+|||
T Consensus 81 LPePLi~~~~y~~~~~~~~~~~~~~~i~~~~~-li~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivf~P~ll~ 159 (186)
T cd04406 81 LPNPLMTFELYEEFLRAMGLQERRETVRGVYS-VIDQLSRTHLNTLERLIFHLVRIALQEETNRMSANALAIVFAPCILR 159 (186)
T ss_pred CCCccCCHHHHHHHHHHHhcccHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHhCCCccCCChHHHHHHhcccccC
Confidence 99999999999999999988888889999998 55799999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHh
Q 002837 325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLE 366 (875)
Q Consensus 325 p~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIe 366 (875)
++... + + +..++...+...+|++||-
T Consensus 160 ~p~~~-----d--------~---~~~~~~~~~~~~~~~~~~~ 185 (186)
T cd04406 160 CPDTT-----D--------P---LQSVQDISKTTTCVELIVC 185 (186)
T ss_pred CCCCC-----C--------H---HHHHHHHhhccchhhhhcc
Confidence 87321 1 1 2234555667788998873
No 19
>cd04394 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins. The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.9e-37 Score=320.76 Aligned_cols=195 Identities=24% Similarity=0.332 Sum_probs=168.1
Q ss_pred ccccchHHHhhh----cCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcCCCCCCCCCCcchhhhhhhh
Q 002837 165 VVGRPILLALED----IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKH 240 (875)
Q Consensus 165 VFGvpL~~ll~~----~~~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G~~~~~~~~D~h~VAslLK~ 240 (875)
|||+||..++.. ...||.+|.+|+.||++ |+.+|||||++|+..+++.+++.||.|.... ...++|+||++||.
T Consensus 1 vFGv~L~~l~~~~~~~~~~IP~il~~~~~~l~~-~l~~EGIFR~sG~~~~i~~l~~~~d~~~~~~-~~~~~~~vaslLK~ 78 (202)
T cd04394 1 VFGVPLHSLPHSTVPEYGNVPKFLVDACTFLLD-HLSTEGLFRKSGSVVRQKELKAKLEGGEACL-SSALPCDVAGLLKQ 78 (202)
T ss_pred CCCccHHHHHHhhCCCCCCCChHHHHHHHHHHH-CCCCCCeeeCCCCHHHHHHHHHHHcCCCCCc-cccCHHHHHHHHHH
Confidence 799999988753 46799999999999986 5999999999999999999999999986543 45789999999999
Q ss_pred hhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCCCCccchhhhccc
Q 002837 241 VLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAP 320 (875)
Q Consensus 241 fLReLPePLLp~~ly~~~i~~~~~~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~FaP 320 (875)
|||+||+||||+++|+.|+.+....+.++++.+++. ++.+||+.|+.+|+||+.||++|+.|++.|||++.|||+||||
T Consensus 79 flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivfaP 157 (202)
T cd04394 79 FFRELPEPLLPYDLHEALLKAQELPTDEERKSATLL-LTCLLPDEHVNTLRYFFSFLYDVAQRCSENKMDSSNLAVIFAP 157 (202)
T ss_pred HHhcCCCcCCCHHHHHHHHHHHhcCCHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHhhcc
Confidence 999999999999999999999888888888888886 5679999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCcc
Q 002837 321 LLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (875)
Q Consensus 321 ~LLrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~~~ 376 (875)
+|||+..... .|.+ . .......++.+|++||+||+.||.-+.
T Consensus 158 ~L~~~~~~~~-~~s~---------~----~~~~~~~~~~vv~~lI~~~~~i~~vp~ 199 (202)
T cd04394 158 NLFQSEEGGE-KMSS---------S----TEKRLRLQAAVVQTLIDNASNIGIVPD 199 (202)
T ss_pred eeecCCCccc-ccch---------h----HHHhHHHHHHHHHHHHHHHHHHccCCc
Confidence 9999873211 1111 0 112234567999999999999997654
No 20
>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins. ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.4e-37 Score=319.74 Aligned_cols=187 Identities=23% Similarity=0.434 Sum_probs=163.5
Q ss_pred cCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcCCC-CCCCCCCcchhhhhhhhhhccCCCCCCChhhH
Q 002837 177 IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVIGDCVKHVLRELPSSPVPASCC 255 (875)
Q Consensus 177 ~~~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G~~-~~~~~~D~h~VAslLK~fLReLPePLLp~~ly 255 (875)
...||.+|.+|++||+++|+.+|||||++|+..+|+++++.|+.|.. .+....|+|+||++||.|||+||+||||+++|
T Consensus 6 ~~~iP~iv~~ci~~l~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~lLK~fLReLPePLi~~~~y 85 (206)
T cd04376 6 ARQVPRLVESCCQHLEKHGLQTVGIFRVGSSKKRVRQLREEFDRGIDVVLDENHSVHDVAALLKEFFRDMPDPLLPRELY 85 (206)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHHHHhCCCccCCHHHH
Confidence 45799999999999999999999999999999999999999999963 44557899999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcC-----------CCCCCccchhhhccccccC
Q 002837 256 TALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAH-----------ENRMTPSAVAACMAPLLLR 324 (875)
Q Consensus 256 ~~~i~~~~~~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~-----------~NKMta~NLAi~FaP~LLr 324 (875)
+.|+.+.... .++++..++. ++.+||+.|+.+|+||+.||++|+.|++ .||||+.|||+||||+|||
T Consensus 86 ~~~i~~~~~~-~~~~~~~l~~-li~~LP~~n~~~L~~L~~~L~~V~~~s~~~~~~~~~~~~~NkM~~~NLAivf~P~Ll~ 163 (206)
T cd04376 86 TAFIGTALLE-PDEQLEALQL-LIYLLPPCNCDTLHRLLKFLHTVAEHAADSIDEDGQEVSGNKMTSLNLATIFGPNLLH 163 (206)
T ss_pred HHHHHHHcCC-HHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCHHHHHHHhhccccC
Confidence 9999998765 6788999998 5579999999999999999999999986 7999999999999999999
Q ss_pred CCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCcc
Q 002837 325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (875)
Q Consensus 325 p~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~~~ 376 (875)
++..+..++++ ..+.+.....++.+|++||+||+.||..++
T Consensus 164 ~~~~~~~~~~~-----------~~~~~~~~~~~~~vv~~LI~~~~~iF~~~~ 204 (206)
T cd04376 164 KQKSGEREFVQ-----------ASLRIEESTAIINVVQTMIDNYEELFMVSP 204 (206)
T ss_pred CCCCcccccch-----------hhhhHHHHHHHHHHHHHHHHhHHHHcCCCC
Confidence 98544322222 122344456678899999999999999765
No 21
>cd04396 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins. Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.5e-37 Score=323.77 Aligned_cols=188 Identities=20% Similarity=0.289 Sum_probs=161.7
Q ss_pred ccccchHHHhhhc----------------CCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcCC----CC
Q 002837 165 VVGRPILLALEDI----------------DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK----TE 224 (875)
Q Consensus 165 VFGvpL~~ll~~~----------------~~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G~----~~ 224 (875)
||||+|++.++.. ..||.+|.+|+.||+++|+.+|||||++|+..+++.+++.|+.|. ..
T Consensus 1 ~fg~~l~~~~~~~~~~~~~~~~~~~~~~~~~IP~iv~~ci~~l~~~gl~~EGIFRvsG~~~~i~~L~~~~d~~~~~~~~~ 80 (225)
T cd04396 1 VFGVSLEESLKYASVAISIVDEDGEQYVYGYIPVVVAKCGVYLKENATEVEGIFRVAGSSKRIRELQLIFSTPPDYGKSF 80 (225)
T ss_pred CCCCcHHHHHHhcchheeeecCCCccccCCCCChHHHHHHHHHHHCCCCCCCceeCCCCHHHHHHHHHHHccCcccCCcC
Confidence 7999999888652 258999999999999999999999999999999999999999863 22
Q ss_pred CCCCCCcchhhhhhhhhhccCCCCCCChhhHHHHHHHHhc-----------------CCHHHHHHHHHHHHHhhCChhHH
Q 002837 225 FSADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKI-----------------DRKEARISAMRSAILETFPEPNR 287 (875)
Q Consensus 225 ~~~~~D~h~VAslLK~fLReLPePLLp~~ly~~~i~~~~~-----------------~~~eeri~~l~~lLl~~LP~~N~ 287 (875)
....+++|+||++||.|||+||+||||+++|+.|+.+... .+..+++..++. ++.+||++|+
T Consensus 81 ~~~~~~vh~va~lLK~fLReLPePLip~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~l~~-li~~LP~~n~ 159 (225)
T cd04396 81 DWDGYTVHDAASVLRRYLNNLPEPLVPLDLYEEFRNPLRKRPRILQYMKGRINEPLNTDIDQAIKEYRD-LITRLPNLNR 159 (225)
T ss_pred CccCCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHhcchhhhhhccccccccccCHHHHHHHHHH-HHHHCCHHHH
Confidence 3366899999999999999999999999999999987643 356788999998 5579999999
Q ss_pred HHHHHHHHHHHHHhcCcCCCCCCccchhhhccccccCCCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 002837 288 RLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (875)
Q Consensus 288 ~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~FaP~LLrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIen 367 (875)
.+|+||+.||++|++|++.|||++.|||+||||+||+++.. +|. .......+.+|++||+|
T Consensus 160 ~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP~Ll~~~~~---~~~----------------~~~~~~~~~~ve~lI~~ 220 (225)
T cd04396 160 QLLLYLLDLLAVFARNSDKNLMTASNLAAIFQPGILSHPDH---EMD----------------PKEYKLSRLVVEFLIEH 220 (225)
T ss_pred HHHHHHHHHHHHHHHhhccccCChhhhheeeccccCCCCcc---ccC----------------HHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998731 111 11223456899999999
Q ss_pred ccccC
Q 002837 368 YENIF 372 (875)
Q Consensus 368 y~~IF 372 (875)
++.|.
T Consensus 221 ~~~~~ 225 (225)
T cd04396 221 QDKFL 225 (225)
T ss_pred HHhhC
Confidence 99863
No 22
>cd04398 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins. Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.1e-37 Score=315.42 Aligned_cols=185 Identities=24% Similarity=0.404 Sum_probs=165.9
Q ss_pred cccchHHHhhh-cCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcCCC--CCC----CCCCcchhhhhh
Q 002837 166 VGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT--EFS----ADEDAHVIGDCV 238 (875)
Q Consensus 166 FGvpL~~ll~~-~~~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G~~--~~~----~~~D~h~VAslL 238 (875)
||+||+.++.. +..||.+|.+|+.||+++|+.+|||||++|+..+++++++.+++|.. .+. ...|||+||++|
T Consensus 1 FG~~L~~~~~~~~~~iP~~v~~~i~~l~~~gl~~eGiFR~~g~~~~i~~l~~~~d~~~~~~~~~~~~~~~~d~~~va~~L 80 (192)
T cd04398 1 FGVPLEDLILREGDNVPNIVYQCIQAIENFGLNLEGIYRLSGNVSRVNKLKELFDKDPLNVLLISPEDYESDIHSVASLL 80 (192)
T ss_pred CCCChHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCCeeecCCcHHHHHHHHHHHccCCccccccccccccccHHHHHHHH
Confidence 99999999875 46799999999999999999999999999999999999999999852 221 246999999999
Q ss_pred hhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCCCCccchhhhc
Q 002837 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (875)
Q Consensus 239 K~fLReLPePLLp~~ly~~~i~~~~~~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~F 318 (875)
|.|||+||+||||.++|+.|+.+.+..+..+++..++. ++.+||+.|+.+|+||+.||++|+.+++.|+|++.|||+||
T Consensus 81 K~fLreLp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~-li~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf 159 (192)
T cd04398 81 KLFFRELPEPLLTKALSREFIEAAKIEDESRRRDALHG-LINDLPDANYATLRALMFHLARIKEHESVNRMSVNNLAIIW 159 (192)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHHhhhCCCHhHHHHHH
Confidence 99999999999999999999999998888899999998 55799999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 002837 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (875)
Q Consensus 319 aP~LLrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF 372 (875)
||+|||++..+ +........++++||+||+.||
T Consensus 160 ~P~l~~~~~~~---------------------~~~~~~~~~~~~~LI~~~~~iF 192 (192)
T cd04398 160 GPTLMNAAPDN---------------------AADMSFQSRVIETLLDNAYQIF 192 (192)
T ss_pred hhhhCCCCccc---------------------hhhHHHHHHHHHHHHHHHHHhC
Confidence 99999987320 1122445789999999999998
No 23
>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins. Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=100.00 E-value=7.2e-37 Score=312.57 Aligned_cols=185 Identities=26% Similarity=0.386 Sum_probs=167.8
Q ss_pred cccchHHHhhhcCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcCC-CCCCCCCCcchhhhhhhhhhcc
Q 002837 166 VGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLRE 244 (875)
Q Consensus 166 FGvpL~~ll~~~~~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G~-~~~~~~~D~h~VAslLK~fLRe 244 (875)
||+||..++.++..||.+|.+|++||+.+|+.+|||||++|+..+++++++.++.|. ......+|+|+||++||.|||+
T Consensus 1 FG~~L~~~~~~~~~vP~~l~~~~~~l~~~g~~~eGiFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~~va~~LK~flr~ 80 (186)
T cd04377 1 FGVSLSSLTSEDRSVPLVLEKLLEHIEMHGLYTEGIYRKSGSANKIKELRQGLDTDPDSVNLEDYPIHVITSVLKQWLRE 80 (186)
T ss_pred CCCCHHHHHhCCCCCChHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhCCCcccCcccCCHHHHHHHHHHHHHc
Confidence 999999999888899999999999999999999999999999999999999999984 3335678999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCCCCccchhhhccccccC
Q 002837 245 LPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLR 324 (875)
Q Consensus 245 LPePLLp~~ly~~~i~~~~~~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~FaP~LLr 324 (875)
||+||||+++|+.|+.+....+..+++..++. ++.+||+.|+.+|.||+.||++|+.|++.|||++.|||+||||+|||
T Consensus 81 LpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~-~i~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf~P~ll~ 159 (186)
T cd04377 81 LPEPLMTFELYENFLRAMELEEKQERVRALYS-VLEQLPRANLNTLERLIFHLVRVALQEEVNRMSANALAIVFAPCILR 159 (186)
T ss_pred CCCccCCHHHHHHHHHHHhcCCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhhHhcC
Confidence 99999999999999999998888899999998 55799999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 002837 325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (875)
Q Consensus 325 p~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIen 367 (875)
++... +. +.++....+...+|++||+.
T Consensus 160 ~~~~~-------------~~---~~~~~d~~~~~~~~e~li~~ 186 (186)
T cd04377 160 CPDTA-------------DP---LQSLQDVSKTTTCVETLIKE 186 (186)
T ss_pred CCCCC-------------CH---HHHHHHHHHHHHHHHHHhhC
Confidence 87321 11 23566677888999999974
No 24
>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins. Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.4e-37 Score=315.13 Aligned_cols=177 Identities=21% Similarity=0.374 Sum_probs=161.5
Q ss_pred ccccchHHHhhh------cCCCcHHHHHHHHHHHhcC-CcccCccccCCCHHHHHHHHHHHhcCC-CCC---CCCCCcch
Q 002837 165 VVGRPILLALED------IDGGPSFLEKALRFLEKFG-TKVEGILRQAADVEEVDRRVQEYEQGK-TEF---SADEDAHV 233 (875)
Q Consensus 165 VFGvpL~~ll~~------~~~VP~iL~~~i~~Le~~G-l~~EGIFRisG~~~~V~~L~~~ld~G~-~~~---~~~~D~h~ 233 (875)
|||+||+++++. +..||.+|.+|+.||+++| +.+|||||++|+...++.+++.|+.|. ..+ ....|+|+
T Consensus 1 vFGv~L~~~~~~~~~~~~~~~iP~iv~~~i~~l~~~g~~~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~d~h~ 80 (190)
T cd04400 1 IFGSPLEEAVELSSHKYNGRDLPSVVYRCIEYLDKNRAIYEEGIFRLSGSASVIKQLKERFNTEYDVDLFSSSLYPDVHT 80 (190)
T ss_pred CCCCcHHHHHHHhccccCCCCCChHHHHHHHHHHHcCCcCCCCeeeCCCcHHHHHHHHHHHcCCCCCCccccccccCHHH
Confidence 799999999975 3469999999999999987 799999999999999999999999984 222 23579999
Q ss_pred hhhhhhhhhccCCCCCCChhhHHHHHHHHhcC-CHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCCCCcc
Q 002837 234 IGDCVKHVLRELPSSPVPASCCTALLEAYKID-RKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPS 312 (875)
Q Consensus 234 VAslLK~fLReLPePLLp~~ly~~~i~~~~~~-~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~ 312 (875)
||++||.|||+||+||||.++|+.|+.+.+.. +..+++..++. ++++||+.|+.+|++|+.||++|+.|++.|+||+.
T Consensus 81 va~lLK~flreLP~PLi~~~~~~~~~~~~~~~~~~~~~~~~l~~-li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~ 159 (190)
T cd04400 81 VAGLLKLYLRELPTLILGGELHNDFKRLVEENHDRSQRALELKD-LVSQLPQANYDLLYVLFSFLRKIIEHSDVNKMNLR 159 (190)
T ss_pred HHHHHHHHHHhCCcccCCHHHHHHHHHHHhccCCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHhccccCCChH
Confidence 99999999999999999999999999988776 77889999998 55799999999999999999999999999999999
Q ss_pred chhhhccccccCCCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 002837 313 AVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDD 374 (875)
Q Consensus 313 NLAi~FaP~LLrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~ 374 (875)
|||+||||+|++|. .++..||++|+.||++
T Consensus 160 NLa~vf~P~L~~~~--------------------------------~~~~~~~~~~~~~f~~ 189 (190)
T cd04400 160 NVCIVFSPTLNIPA--------------------------------GIFVLFLTDFDCIFGG 189 (190)
T ss_pred HhhhhcCCCCCCCH--------------------------------HHHHHHHHHHHHHcCC
Confidence 99999999999874 4689999999999986
No 25
>cd04378 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases ge
Probab=100.00 E-value=5.3e-37 Score=317.67 Aligned_cols=187 Identities=21% Similarity=0.314 Sum_probs=162.5
Q ss_pred cccchHHHhhh-cCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcCCC-CCCCCCCcchhhhhhhhhhc
Q 002837 166 VGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVIGDCVKHVLR 243 (875)
Q Consensus 166 FGvpL~~ll~~-~~~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G~~-~~~~~~D~h~VAslLK~fLR 243 (875)
||+||..++.+ ++.||.+|.+|+.||+++|+.+|||||++|+..++++++..|+.|.. ....++|+|+||++||.|||
T Consensus 1 FG~~L~~~~~~~~~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~~~~~~~~~~~~~~~h~va~~LK~fLR 80 (203)
T cd04378 1 FGVDFSQVPRDFPDEVPFIIKKCTSEIENRALGVQGIYRVSGSKARVEKLCQAFENGKDLVELSELSPHDISSVLKLFLR 80 (203)
T ss_pred CCCChHHHHHHCCCCCChHHHHHHHHHHhcCCCCccceeCCCcHHHHHHHHHHHhcCCCccccccCCHHHHHHHHHHHHH
Confidence 99999999986 57899999999999999999999999999999999999999999863 33557899999999999999
Q ss_pred cCCCCCCChhhHHHHHHHHhcC--------------CHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCCC
Q 002837 244 ELPSSPVPASCCTALLEAYKID--------------RKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRM 309 (875)
Q Consensus 244 eLPePLLp~~ly~~~i~~~~~~--------------~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKM 309 (875)
+||+||||+++|+.|+.+.... +...++..++. ++..||++|+.+|+||+.||++|+.|++.|||
T Consensus 81 eLpePlip~~~y~~~~~~~~~~~~~~e~~~~~~~~~~~~~~i~~l~~-ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM 159 (203)
T cd04378 81 QLPEPLILFRLYNDFIALAKEIQRDTEEDKAPNTPIEVNRIIRKLKD-LLRQLPASNYNTLQHLIAHLYRVAEQFEENKM 159 (203)
T ss_pred hCCCccCCHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999986531 22457889998 56799999999999999999999999999999
Q ss_pred CccchhhhccccccCCCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 002837 310 TPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (875)
Q Consensus 310 ta~NLAi~FaP~LLrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIen 367 (875)
++.|||+||||+|||++.... . ..+.++......+.+|++||.|
T Consensus 160 ~~~NLaivf~P~Ll~~~~~~~-------------~-~~~~~l~~~~~q~~~ve~li~~ 203 (203)
T cd04378 160 SPNNLGIVFGPTLIRPRPGDA-------------D-VSLSSLVDYGYQARLVEFLITN 203 (203)
T ss_pred CHHHhhhhhccccCCCCCCCc-------------c-hhHHHHHhhhhhHHHHHHHhhC
Confidence 999999999999999984211 0 0123345567788999999986
No 26
>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins. p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=8.4e-37 Score=311.92 Aligned_cols=161 Identities=28% Similarity=0.520 Sum_probs=151.6
Q ss_pred cccchHHHhhhcCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcCCC-CC-CCCCCcchhhhhhhhhhc
Q 002837 166 VGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EF-SADEDAHVIGDCVKHVLR 243 (875)
Q Consensus 166 FGvpL~~ll~~~~~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G~~-~~-~~~~D~h~VAslLK~fLR 243 (875)
||+||..++..+..||.+|.+|+.||+++|+.+|||||++|+..+++++++.|+.|.. .+ ..++|+|+||++||.|||
T Consensus 1 FG~pL~~~~~~~~~IP~~l~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~fLr 80 (185)
T cd04373 1 FGVPLANVVTSEKPIPIFLEKCVEFIEATGLETEGIYRVSGNKTHLDSLQKQFDQDHNLDLVSKDFTVNAVAGALKSFFS 80 (185)
T ss_pred CCCchHHHHhCCCCCCcHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHhcCCCCCcccccCcHHHHHHHHHHHHh
Confidence 9999999999888999999999999999999999999999999999999999999753 33 245799999999999999
Q ss_pred cCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCCCCccchhhhcccccc
Q 002837 244 ELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLL 323 (875)
Q Consensus 244 eLPePLLp~~ly~~~i~~~~~~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~FaP~LL 323 (875)
+||+||||+++|+.|+++....+..+++..++. ++++||+.|+.||+||+.||++|+++++.|+||+.|||+||||+||
T Consensus 81 eLPePlip~~~~~~~~~~~~~~~~~~~i~~l~~-li~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~NLAi~f~P~L~ 159 (185)
T cd04373 81 ELPDPLIPYSMHLELVEAAKINDREQRLHALKE-LLKKFPPENFDVFKYVITHLNKVSQNSKVNLMTSENLSICFWPTLM 159 (185)
T ss_pred cCCchhccHHHHHHHHHHHhCCCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHHHHHHccccC
Confidence 999999999999999999998888899999998 5579999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 002837 324 RPLL 327 (875)
Q Consensus 324 rp~~ 327 (875)
|+..
T Consensus 160 ~~~~ 163 (185)
T cd04373 160 RPDF 163 (185)
T ss_pred CCCC
Confidence 9873
No 27
>cd04409 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1). PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1e-36 Score=317.27 Aligned_cols=187 Identities=22% Similarity=0.322 Sum_probs=158.7
Q ss_pred cccchHHHhhh-cCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcCCC-CCCCCCCcchhhhhhhhhhc
Q 002837 166 VGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVIGDCVKHVLR 243 (875)
Q Consensus 166 FGvpL~~ll~~-~~~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G~~-~~~~~~D~h~VAslLK~fLR 243 (875)
||+||..++.+ .++||.+|.+|+.||+++|+.+|||||++|+..+++++++.|+.|.. ....++|+|+||++||.|||
T Consensus 1 FG~~L~~~~~~~~~~iP~il~~ci~~ie~~gl~~EGIfRvsG~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~~LK~fLR 80 (211)
T cd04409 1 FGADFAQVAKKSPDGIPFIIKKCTSEIESRALCLKGIYRVNGAKSRVEKLCQAFENGKDLVELSELSPHDISNVLKLYLR 80 (211)
T ss_pred CCCChHHHHHhCCCCCCcHHHHHHHHHHHcCCCCCCeeECCCcHHHHHHHHHHHHcCCCccccccCCHHHHHHHHHHHHH
Confidence 99999999876 46899999999999999999999999999999999999999999863 33456899999999999999
Q ss_pred cCCCCCCChhhHHHHHHHHhcCC----------------------HHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHh
Q 002837 244 ELPSSPVPASCCTALLEAYKIDR----------------------KEARISAMRSAILETFPEPNRRLLQRILRMMHTIS 301 (875)
Q Consensus 244 eLPePLLp~~ly~~~i~~~~~~~----------------------~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va 301 (875)
+||+||||+++|+.|+.+.+... ...++..++. ++.+||++|+.+|+||+.||++|+
T Consensus 81 eLPePLi~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~~~~~~~~~l~~-li~~LP~~n~~~L~~L~~~L~~V~ 159 (211)
T cd04409 81 QLPEPLILFRLYNEFIGLAKESQHVNETQEAKKNSDKKWPNMCTELNRILLKSKD-LLRQLPAPNYNTLQFLIVHLHRVS 159 (211)
T ss_pred hCCCcccCHHHHHHHHHHHHhhcccccccccccccccccccchhhHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998764210 0134667887 557999999999999999999999
Q ss_pred cCcCCCCCCccchhhhccccccCCCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 002837 302 SHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (875)
Q Consensus 302 ~~s~~NKMta~NLAi~FaP~LLrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIen 367 (875)
+|++.|||++.|||+||||+||||...+. . ..+..+.....++.+|++||.+
T Consensus 160 ~~s~~NkM~~~NLAivf~P~Llrp~~~~~-~-------------~~~~~~~~~~~~~~~ve~li~~ 211 (211)
T cd04409 160 EQAEENKMSASNLGIIFGPTLIRPRPTDA-T-------------VSLSSLVDYPHQARLVELLITY 211 (211)
T ss_pred cccccCCCChHHhhhhccccccCCCCCCc-c-------------hhHHHHhhhhhHHHHHHHHhhC
Confidence 99999999999999999999999873210 0 0122344556778999999974
No 28
>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins. Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switch
Probab=100.00 E-value=3.4e-36 Score=310.03 Aligned_cols=163 Identities=20% Similarity=0.320 Sum_probs=151.6
Q ss_pred cccchHHHhhhc-CCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcCCCC---CCCCCCcchhhhhhhhh
Q 002837 166 VGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE---FSADEDAHVIGDCVKHV 241 (875)
Q Consensus 166 FGvpL~~ll~~~-~~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G~~~---~~~~~D~h~VAslLK~f 241 (875)
||+||..++.+. ..||.+|.+|++||+++|+.+|||||++|+..+++++++.|+.|... .....|+|+||++||.|
T Consensus 1 FGv~L~~~~~r~~~~IP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK~f 80 (196)
T cd04387 1 FGVKISTVTKRERSKVPYIVRQCVEEVERRGMEEVGIYRISGVATDIQALKAAFDTNNKDVSVMLSEMDVNAIAGTLKLY 80 (196)
T ss_pred CCCCHHHHHHhcCCCCChHHHHHHHHHHHhCCCCCceEEeCCcHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHH
Confidence 999999999874 46999999999999999999999999999999999999999998532 24568999999999999
Q ss_pred hccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCCCCccchhhhcccc
Q 002837 242 LRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPL 321 (875)
Q Consensus 242 LReLPePLLp~~ly~~~i~~~~~~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~FaP~ 321 (875)
||+||+||||+++|+.|+.+....+...++..++. ++.+||++|+.+|.||+.||++|+++++.|||++.|||+||||+
T Consensus 81 LReLPePLip~~~y~~~~~~~~~~~~~~~~~~l~~-ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~ 159 (196)
T cd04387 81 FRELPEPLFTDELYPNFAEGIALSDPVAKESCMLN-LLLSLPDPNLVTFLFLLHHLKRVAEREEVNKMSLHNLATVFGPT 159 (196)
T ss_pred HHhCCCccCCHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHccc
Confidence 99999999999999999999998888899999998 55799999999999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 002837 322 LLRPLLAG 329 (875)
Q Consensus 322 LLrp~~~~ 329 (875)
|||++...
T Consensus 160 Llr~~~~~ 167 (196)
T cd04387 160 LLRPSEKE 167 (196)
T ss_pred cCCCCccc
Confidence 99998543
No 29
>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude.
Probab=100.00 E-value=2.9e-36 Score=308.77 Aligned_cols=184 Identities=27% Similarity=0.435 Sum_probs=162.7
Q ss_pred cccccchHHHhhh---cCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcCCCC-CCCCCCcchhhhhhh
Q 002837 164 LVVGRPILLALED---IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE-FSADEDAHVIGDCVK 239 (875)
Q Consensus 164 ~VFGvpL~~ll~~---~~~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G~~~-~~~~~D~h~VAslLK 239 (875)
++||+||..++.+ .++||.+|..|+.||+++|+.+|||||++|+...++.+++.++.|... +...+|||+||++||
T Consensus 1 ~~FGv~L~~l~~~~~~~~~vP~il~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~d~~~~~~~~~~~d~~~va~~lK 80 (189)
T cd04393 1 KVFGVPLQELQQAGQPENGVPAVVRHIVEYLEQHGLEQEGLFRVNGNAETVEWLRQRLDSGEEVDLSKEADVCSAASLLR 80 (189)
T ss_pred CcccccHHHHHhccCCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHHHHcCCCCCCccccCCHHHHHHHHH
Confidence 4899999999876 457999999999999999999999999999999999999999999743 445689999999999
Q ss_pred hhhccCCCCCCChhhHHHHHHHHhcC-CHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCCCCccchhhhc
Q 002837 240 HVLRELPSSPVPASCCTALLEAYKID-RKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (875)
Q Consensus 240 ~fLReLPePLLp~~ly~~~i~~~~~~-~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~F 318 (875)
.|||+||+||||+++|+.|+.+++.. ...+++..++. ++.+||+.|+.+|.+|+.||++|+.|++.|+||+.|||+||
T Consensus 81 ~flr~Lp~pLi~~~~~~~l~~~~~~~~~~~~~~~~l~~-li~~Lp~~n~~~L~~l~~~l~~V~~~s~~NkMt~~nLA~vf 159 (189)
T cd04393 81 LFLQELPEGLIPASLQIRLMQLYQDYNGEDEFGRKLRD-LLQQLPPVNYSLLKFLCHFLSNVASQHHENRMTAENLAAVF 159 (189)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHHHccChHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHcccccCCCHHHhhhhc
Confidence 99999999999999999999987654 56778889998 55799999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 002837 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (875)
Q Consensus 319 aP~LLrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIen 367 (875)
||+|||.+.. .++ +.....++.++++||+|
T Consensus 160 ~P~l~~~~~~----~~~---------------~~~~~~~~~~~~~li~~ 189 (189)
T cd04393 160 GPDVFHVYTD----VED---------------MKEQEICSRIMAKLLEN 189 (189)
T ss_pred cCceeCCCCC----ccc---------------HHHHHHHHHHHHHHhcC
Confidence 9999998731 111 22335577899999987
No 30
>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins. Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=5.8e-36 Score=310.61 Aligned_cols=195 Identities=22% Similarity=0.329 Sum_probs=160.9
Q ss_pred cccchHHHhhhc---CCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcCCC--CCC--CCCCcchhhhhh
Q 002837 166 VGRPILLALEDI---DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT--EFS--ADEDAHVIGDCV 238 (875)
Q Consensus 166 FGvpL~~ll~~~---~~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G~~--~~~--~~~D~h~VAslL 238 (875)
||+||..++.+. ..||.+|.+|++||+.+|+.+|||||++|+...++.+++.|+.+.. .+. ...|+|+||++|
T Consensus 1 FGvpL~~l~~re~~~~~IP~iv~~ci~~L~~~gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~l~~~~~~dvh~vA~lL 80 (207)
T cd04379 1 FGVPLSRLVEREGESRDVPIVLQKCVQEIERRGLDVIGLYRLCGSAAKKKELRDAFERNSAAVELSEELYPDINVITGVL 80 (207)
T ss_pred CCCChHHHHhhcCCCCCcChHHHHHHHHHHHcCCCcCCceeeCCcHHHHHHHHHHHcCCCCcCCCChhhcccHHHHHHHH
Confidence 999999999873 4699999999999999999999999999999999999999998742 222 224899999999
Q ss_pred hhhhccCCCCCCChhhHHHHHHHHhcCC---HHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCCCCccchh
Q 002837 239 KHVLRELPSSPVPASCCTALLEAYKIDR---KEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVA 315 (875)
Q Consensus 239 K~fLReLPePLLp~~ly~~~i~~~~~~~---~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLA 315 (875)
|.|||+||+||||+++|+.|+++..... ...++..++. ++++||+.|+.+|+||+.||+.|+.|++.|||++.|||
T Consensus 81 K~fLReLPePLip~~~y~~~~~~~~~~~~~~~~~~~~~~~~-li~~LP~~n~~~L~~Ll~~L~~V~~~s~~NkMt~~NLA 159 (207)
T cd04379 81 KDYLRELPEPLITPQLYEMVLEALAVALPNDVQTNTHLTLS-IIDCLPLSAKATLLLLLDHLSLVLSNSERNKMTPQNLA 159 (207)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhccChhhHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhH
Confidence 9999999999999999999999876543 2344667777 56799999999999999999999999999999999999
Q ss_pred hhccccccCCCCCCCC-CcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 002837 316 ACMAPLLLRPLLAGEC-ELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEY 368 (875)
Q Consensus 316 i~FaP~LLrp~~~~~~-~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny 368 (875)
+||||+||+++..+.. .+....+|....+. ...+...++.+||+-|
T Consensus 160 ivf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 206 (207)
T cd04379 160 VCFGPVLMFCSQEFSRYGISPTSKMAAVSTV-------DFKQHIEVLHYLLQIW 206 (207)
T ss_pred HhhccccCCCCcccccccCCCCccccccchh-------hHHHHHHHHHHHHHhc
Confidence 9999999999865432 12212233333332 2345678999999865
No 31
>cd04392 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins. The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=5.8e-36 Score=310.98 Aligned_cols=186 Identities=23% Similarity=0.380 Sum_probs=157.1
Q ss_pred cccchHHHhhhcCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcCCCC-CC-CCCCcchhhhhhhhhhc
Q 002837 166 VGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE-FS-ADEDAHVIGDCVKHVLR 243 (875)
Q Consensus 166 FGvpL~~ll~~~~~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G~~~-~~-~~~D~h~VAslLK~fLR 243 (875)
||.||.+ ++++ +|.+||+||++ |+.+|||||++|+..+++.+++.|+.|... +. ..+|+|+||++||.|||
T Consensus 1 ~~~~~~~-----~~~~-~v~~~i~~l~~-gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~~~~~~~~h~va~lLK~flR 73 (208)
T cd04392 1 FGAPLTE-----EGIA-QIYQLIEYLEK-NLRVEGLFRKPGNSARQQELRDLLNSGTDLDLESGGFHAHDCATVLKGFLG 73 (208)
T ss_pred CCCCccc-----cccH-HHHHHHHHHHh-CCCCcceeeCCCcHHHHHHHHHHHHcCCCCCcccccCCHHHHHHHHHHHHH
Confidence 7888743 3444 78899999998 999999999999999999999999999643 32 35799999999999999
Q ss_pred cCCCCCCChhhHHHHHHHHh------------cCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCCCCc
Q 002837 244 ELPSSPVPASCCTALLEAYK------------IDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTP 311 (875)
Q Consensus 244 eLPePLLp~~ly~~~i~~~~------------~~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta 311 (875)
+||+||||+++|+.|+.+.+ ..+.+.++..++. ++.+||++|+.+|+||+.||++|++|++.||||+
T Consensus 74 eLPePLi~~~~y~~~~~i~~l~~~~~~~~~~~~~~~~~~i~~l~~-ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~ 152 (208)
T cd04392 74 ELPEPLLTHAHYPAHLQIADLCQFDEKGNKTSAPDKERLLEALQL-LLLLLPEENRNLLKLILDLLYQTAKHEDKNKMSA 152 (208)
T ss_pred hCCCccCCHHHHHHHHHHHHhhcccccccccCCCCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHhcccCCCCH
Confidence 99999999999999987654 2345677889997 5679999999999999999999999999999999
Q ss_pred cchhhhccccccCCCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCcc
Q 002837 312 SAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (875)
Q Consensus 312 ~NLAi~FaP~LLrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~~~ 376 (875)
.|||+||||+||||+..+ ...+ ......++.||++||+||+.||+...
T Consensus 153 ~NLAivf~P~Ll~~~~~~--------------~~~~---~~~~~~~~~iv~~lI~~~~~iF~~~~ 200 (208)
T cd04392 153 DNLALLFTPHLICPRNLT--------------PEDL---HENAQKLNSIVTFMIKHSQKLFKAPA 200 (208)
T ss_pred HHHHHHhCcccCCCCCCC--------------HHHH---HHHHHHHHHHHHHHHHHHHHHcCCcH
Confidence 999999999999986211 0111 12234578999999999999999875
No 32
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=5.8e-37 Score=360.04 Aligned_cols=337 Identities=18% Similarity=0.259 Sum_probs=248.3
Q ss_pred CceEEEeeeeee----ccC----CCCCCcEEEEEEEeCCeeeEecCCCCCCCCCC----------ceeeeeeCceEeCCC
Q 002837 17 NTVFKSGPLFIS----SKG----IGWKSWKKRWFILTRTSLVFFKNDPSALPQRG----------GEVNLTLGGIDLNNS 78 (875)
Q Consensus 17 ~~V~KeG~L~l~----KkG----~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~----------~e~~i~Lg~I~L~~~ 78 (875)
....++||||+. |+| .....|+.-|.+|.++.|+.|++.....+... .+-.+++.+|-+.-.
T Consensus 921 sd~~megWly~~q~~SkkGk~tGssLr~wk~~y~~l~ghsl~L~ss~re~~~~~aas~as~~~st~tts~c~nscltdI~ 1000 (1973)
T KOG4407|consen 921 SDSEMEGWLYVLQSSSKKGKATGSSLREWKLSYTGLHGHSLVLNSSAREHNSQSAASLASSSCSTATTSECLNSCLTDIQ 1000 (1973)
T ss_pred hhhhhhcceeeeeecccCCcccCcchhhhhhHHHHhccccceecccccccCcchhhhhcccccccccCccccccchhhhh
Confidence 346789999954 443 45788999999999999999998876432211 112233333322211
Q ss_pred cceeeccCCceeEEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHhhCCcchhccCC-------------ccc------
Q 002837 79 GSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAALVMGH-------------NGI------ 139 (875)
Q Consensus 79 ~sV~~~~~Kk~~fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~~aP~~a~~~g~-------------~~i------ 139 (875)
. ....++..|.++.. +-..|.|+|++.++|-.|+..+++..........+++. +++
T Consensus 1001 y---setkrn~vfRLTt~--d~ce~lfqaeDrddmlgG~~ttq~St~~na~~~~V~~r~~a~~s~~~s~~~~~kae~~ps 1075 (1973)
T KOG4407|consen 1001 Y---SETKRNQVFRLTTN--DLCEGLFQAEDRDDMLGGLSTTQSSTTENAKNRLVMHRYIAKNSQLQSPTANKKAETDPS 1075 (1973)
T ss_pred h---hhhhhhhHHHhHHH--HHHhHhhccCccccccchhhhhhhcccccccccccccchhhhcccccCccccchhhcCCC
Confidence 1 11344456666532 23679999999999999999997765422111111110 000
Q ss_pred ---------------ccCCCCc------------cccCcc------ccccCCCC-----------------------CCC
Q 002837 140 ---------------FRNDTND------------TIEGSF------HQWRDKRP-----------------------VKS 163 (875)
Q Consensus 140 ---------------f~~~~~~------------~~~~s~------~~~k~k~~-----------------------~k~ 163 (875)
|...... ..+..+ ..||+-.+ .+-
T Consensus 1076 t~~ssl~~~at~~~a~s~~~sq~~~p~~~se~k~~p~~d~~~PKsk~~Wkk~~~~~~gsg~g~~~~~~g~~~~~~a~~~~ 1155 (1973)
T KOG4407|consen 1076 TVPSSLQTMATTSSAFSHHSSQAMGPSRDSENKEAPTADATTPKSKRKWKKSKAAKQGSGGGSSGSSSGSQQQGAAGAPQ 1155 (1973)
T ss_pred CCcchhHHHHHHhhhccCccccccCcccccccccCCcccCCCCccccchhhhhhhhccCCCCCCCCcccccccccccCcC
Confidence 1000000 011122 23432100 112
Q ss_pred cccccchHHHhhh--cCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcCCCC------CCCCCCcchhh
Q 002837 164 LVVGRPILLALED--IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE------FSADEDAHVIG 235 (875)
Q Consensus 164 ~VFGvpL~~ll~~--~~~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G~~~------~~~~~D~h~VA 235 (875)
.+|||+|.+.--. .+-||.||+.|+..++.+||.+.|||||+||...|..|.+.++++.+- +..+.|+++|.
T Consensus 1156 ~~~GVrl~dCP~~~~n~yVP~iV~~C~~vVEt~Gl~~vGIYRIPGN~AAIs~l~E~ln~~~f~~~v~~~DdrWrDvNVVS 1235 (1973)
T KOG4407|consen 1156 PVLGVRLADCPTGSCNDYVPMIVQACVCVVETYGLDTVGIYRIPGNTAAISALKESLNNRGFLSKVESLDDRWRDVNVVS 1235 (1973)
T ss_pred cccccccccCCcccccccchHHHHHHHHHHhhcCccceeEEecCCcHHHHHHHHHHHhccccchhhhccccchhhhHHHH
Confidence 4999999655322 456999999999999999999999999999999999999999998422 24568999999
Q ss_pred hhhhhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCCCCccchh
Q 002837 236 DCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVA 315 (875)
Q Consensus 236 slLK~fLReLPePLLp~~ly~~~i~~~~~~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLA 315 (875)
+|||.|||.||+||||..+|..||++.+..+.-+|+..|++ |++.||.++|.+|++|+.||.+|+.|+++|||-+.|||
T Consensus 1236 SLLK~F~RkLPepL~t~~~Y~~FIeAnrk~~~l~Rl~~Lr~-l~~~LPrhhYeTlkfLi~HL~~Vt~nsdvNkMEprNLA 1314 (1973)
T KOG4407|consen 1236 SLLKMFLRKLPEPLLTDKLYPFFIEANRKSTHLNRLHKLRN-LLRKLPRHHYETLKFLIVHLSEVTKNSDVNKMEPRNLA 1314 (1973)
T ss_pred HHHHHHHHhCCcccccccchhhhhhhcccccHHHHHHHHHH-HHHhCccchHHHHHHHHHHHHHHhccccccccccccee
Confidence 99999999999999999999999999999999999999999 56899999999999999999999999999999999999
Q ss_pred hhccccccCCCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCcc
Q 002837 316 ACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (875)
Q Consensus 316 i~FaP~LLrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~~~ 376 (875)
|+|||+|+|++. | . |..+......++.||+.||.+|+++|++.-
T Consensus 1315 i~FGPsiVRts~-------D-------n---m~tmVthM~dQckIVEtLI~~~dwfF~esg 1358 (1973)
T KOG4407|consen 1315 IMFGPSIVRTSD-------D-------N---MATMVTHMSDQCKIVETLIHYNDWFFDESG 1358 (1973)
T ss_pred EEeccceeccCC-------c-------c---HHHHhhcchhhhhHHHHHHhhhhheeccCC
Confidence 999999999872 1 1 223345557789999999999999999854
No 33
>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs. ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.4e-35 Score=300.98 Aligned_cols=180 Identities=20% Similarity=0.407 Sum_probs=162.5
Q ss_pred ccchHHHhhhcCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcCCCC--C-CCCCCcchhhhhhhhhhc
Q 002837 167 GRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE--F-SADEDAHVIGDCVKHVLR 243 (875)
Q Consensus 167 GvpL~~ll~~~~~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G~~~--~-~~~~D~h~VAslLK~fLR 243 (875)
|.+|+.......+||.+|.+|+.||+++|+.+|||||++|+...++++++.|+.+... + ...+|||+||++||.|||
T Consensus 2 ~~~l~~~~~~~~~iP~~v~~~i~~l~~~g~~~eGIFR~sg~~~~i~~L~~~~~~~~~~~~~~~~~~d~~~va~llK~yLr 81 (184)
T cd04385 2 GPALEDQQLTDNDIPVIVDKCIDFITQHGLMSEGIYRKNGKNSSVKKLLEAFRKDARSVQLREGEYTVHDVADVLKRFLR 81 (184)
T ss_pred CccHHHhhhCCCCCChHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHhcCCCcCCCCcccCCHHHHHHHHHHHHH
Confidence 7788888877889999999999999999999999999999999999999999886422 2 457899999999999999
Q ss_pred cCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCCCCccchhhhcccccc
Q 002837 244 ELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLL 323 (875)
Q Consensus 244 eLPePLLp~~ly~~~i~~~~~~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~FaP~LL 323 (875)
+||+||||+++|+.|+.+.+..+..+++..++. ++..||++|+.+|++|+.||++|+.|++.|||++.|||+||||+||
T Consensus 82 eLP~pLi~~~~~~~~~~~~~~~~~~~~i~~l~~-~i~~LP~~n~~~L~~l~~~l~~V~~~~~~NkM~~~nLaiv~~P~ll 160 (184)
T cd04385 82 DLPDPLLTSELHAEWIEAAELENKDERIARYKE-LIRRLPPINRATLKVLIGHLYRVQKHSDENQMSVHNLALVFGPTLF 160 (184)
T ss_pred hCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhhhhhccccC
Confidence 999999999999999999998888999999998 5579999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 002837 324 RPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEY 368 (875)
Q Consensus 324 rp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny 368 (875)
|++.. ..........+|+.||+||
T Consensus 161 ~~~~~---------------------~~~~~~~~~~v~~~Li~~~ 184 (184)
T cd04385 161 QTDEH---------------------SVGQTSHEVKVIEDLIDNY 184 (184)
T ss_pred CCCcc---------------------chhHHHHHHHHHHHHHhcC
Confidence 98731 0122346778999999998
No 34
>cd04399 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.3e-35 Score=307.30 Aligned_cols=189 Identities=16% Similarity=0.240 Sum_probs=161.5
Q ss_pred cccchHHHhhhc-CCCcHHHHHHHHHHHhcC--Cccc----CccccCCCHHHHHHHHHHHhcCCCCC-----CCCCCcch
Q 002837 166 VGRPILLALEDI-DGGPSFLEKALRFLEKFG--TKVE----GILRQAADVEEVDRRVQEYEQGKTEF-----SADEDAHV 233 (875)
Q Consensus 166 FGvpL~~ll~~~-~~VP~iL~~~i~~Le~~G--l~~E----GIFRisG~~~~V~~L~~~ld~G~~~~-----~~~~D~h~ 233 (875)
|||||..++... ..||.+|.+|+.||+++| +..+ ||||++|+...+++|++.|++|.... ...+|+|+
T Consensus 1 FGv~L~~~~~~~~~~VP~vV~~ci~~ie~~~~~l~~~~~~~Gi~r~sg~~~~i~~Lr~~~d~~~~~~~~~~~~~~~dv~~ 80 (212)
T cd04399 1 FGVDLETRCRLDKKVVPLIVSAILSYLDQLYPDLINDEVRRNVWTDPVSLKETHQLRNLLNKPKKPDKEVIILKKFEPST 80 (212)
T ss_pred CCCcHHHHHhhcCCCCCHHHHHHHHHHHHhCccccCCcceeeEEEecCcHHHHHHHHHHHcCCCCcchhhhccccCCHHH
Confidence 999999999864 579999999999999975 3333 99999999999999999999985332 34689999
Q ss_pred hhhhhhhhhccCCCCCCChhhHHHHHHHHhc------CCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCC
Q 002837 234 IGDCVKHVLRELPSSPVPASCCTALLEAYKI------DRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHEN 307 (875)
Q Consensus 234 VAslLK~fLReLPePLLp~~ly~~~i~~~~~------~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~N 307 (875)
||++||.|||+||+||||+++|+.|+.+... .+.++|+..++. ++..||++|+.+|++|+.||++|+.++..|
T Consensus 81 va~~LK~ylReLPepL~~~~~y~~~~~~~~~~~~~~~~~~~~r~~~l~~-~l~~LP~~n~~~L~~li~hL~rv~~~~~~~ 159 (212)
T cd04399 81 VASVLKLYLLELPDSLIPHDIYDLIRSLYSAYPPSQEDSDTARIQGLQS-TLSQLPKSHIATLDAIITHFYRLIEITKMG 159 (212)
T ss_pred HHHHHHHHHHHCCCccCCHHHHHHHHHHHHhccccccCCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999887533 457899999998 557999999999999999999999887665
Q ss_pred ---CCCccchhhhccccccCCCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 002837 308 ---RMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDD 374 (875)
Q Consensus 308 ---KMta~NLAi~FaP~LLrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~ 374 (875)
||++.|||+||||+|+|+....... ........+|++||+||+.||++
T Consensus 160 ~~~kM~~~nLa~vfgp~llr~~~~~~~~-------------------~~~~~~~~~~e~Li~~~~~iF~~ 210 (212)
T cd04399 160 ESEEEYADKLATSLSREILRPIIESLLT-------------------IGDKHGYKFFRDLLTHKDQIFSE 210 (212)
T ss_pred cccccCHHHHHHHhhhhhcCCCcccccc-------------------cccHHHHHHHHHHHHhHHHhccc
Confidence 6999999999999999987432111 11245678999999999999986
No 35
>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins. MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway
Probab=100.00 E-value=7.7e-35 Score=299.32 Aligned_cols=178 Identities=20% Similarity=0.314 Sum_probs=157.7
Q ss_pred cCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcCCC-CCCCCCCcchhhhhhhhhhccCCCCCCChhhH
Q 002837 177 IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVIGDCVKHVLRELPSSPVPASCC 255 (875)
Q Consensus 177 ~~~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G~~-~~~~~~D~h~VAslLK~fLReLPePLLp~~ly 255 (875)
...||.+|.+|+.||+++|+.+|||||++|+..+|+.+++.|+.|.. ......|+|+||++||.|||+||+||||+++|
T Consensus 14 ~~~IP~~l~~ci~~ie~~gl~~EGIFRv~G~~~~i~~l~~~~~~~~~~~~~~~~d~h~vaslLK~fLReLPePLi~~~~y 93 (193)
T cd04382 14 SPMIPALIVHCVNEIEARGLTEEGLYRVSGSEREVKALKEKFLRGKTVPNLSKVDIHVICGCLKDFLRSLKEPLITFALW 93 (193)
T ss_pred CCCccHHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHHcCCCCcccccCCHHHHHHHHHHHHHhCCCcCCCHHHH
Confidence 45699999999999999999999999999999999999999998863 34556799999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCCCCccchhhhccccccCCCCCCCCCccc
Q 002837 256 TALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELED 335 (875)
Q Consensus 256 ~~~i~~~~~~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~FaP~LLrp~~~~~~~led 335 (875)
+.|+++.+..+.++++..++. ++..||+.|+.+|+||+.||++|+. ++.|||++.|||+||||+||+++..+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~l~~-ll~~LP~~n~~~L~~L~~~L~~V~~-s~~NkM~~~NLAivf~P~L~~~~~~~~----- 166 (193)
T cd04382 94 KEFMEAAEILDEDNSRAALYQ-AISELPQPNRDTLAFLILHLQRVAQ-SPECKMDINNLARVFGPTIVGYSVPNP----- 166 (193)
T ss_pred HHHHHHHHcCCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHhc-cccCCCChHHhhhhhhchhcCCCCCCc-----
Confidence 999999999888899999998 5579999999999999999999999 999999999999999999999873211
Q ss_pred ccccCCCchHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 002837 336 DFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENI 371 (875)
Q Consensus 336 ~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~I 371 (875)
..++++..+..++.+|+.||++-+..
T Consensus 167 ----------~~~~~~~~~~~~~~vve~Li~~~~~~ 192 (193)
T cd04382 167 ----------DPMTILQDTVRQPRVVERLLEIPSDY 192 (193)
T ss_pred ----------cHHHHHHHhHHHHHHHHHHHhCCccc
Confidence 01345566667789999999987653
No 36
>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.6e-34 Score=295.63 Aligned_cols=178 Identities=22% Similarity=0.251 Sum_probs=152.2
Q ss_pred cccchHHHhhhc------CCCcHHHHHHHHHHHh-cCCcccCccccCCCHHHHHHHHHHHhcCCCCCCCCCCcchhhhhh
Q 002837 166 VGRPILLALEDI------DGGPSFLEKALRFLEK-FGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCV 238 (875)
Q Consensus 166 FGvpL~~ll~~~------~~VP~iL~~~i~~Le~-~Gl~~EGIFRisG~~~~V~~L~~~ld~G~~~~~~~~D~h~VAslL 238 (875)
||+||++++.+. ..||.+|..|++||.+ +|+.+|||||++|+..+++++++.++.|...+....|+|+||++|
T Consensus 1 FG~~L~~~~~r~~~~~~~~~iP~il~~~i~~l~~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~d~h~va~lL 80 (187)
T cd04389 1 FGSSLEEIMDRQKEKYPELKLPWILTFLSEKVLALGGFQTEGIFRVPGDIDEVNELKLRVDQWDYPLSGLEDPHVPASLL 80 (187)
T ss_pred CCCCHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCCcCCCeeeCCCCHHHHHHHHHHHhcCCCCccccCCHHHHHHHH
Confidence 999999998652 3599999999999865 799999999999999999999999999987666678999999999
Q ss_pred hhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCc--CCCCCCccchhh
Q 002837 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHA--HENRMTPSAVAA 316 (875)
Q Consensus 239 K~fLReLPePLLp~~ly~~~i~~~~~~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s--~~NKMta~NLAi 316 (875)
|.|||+||+||||+++|+.++.+.+. ...++. ++.+||+.|+.+|.||+.||+.|++++ +.|||++.|||+
T Consensus 81 K~fLReLpePli~~~~~~~~i~~~~~------~~~~~~-li~~LP~~n~~~L~~l~~~L~~v~~~~~~~~NkM~~~NLAi 153 (187)
T cd04389 81 KLWLRELEEPLIPDALYQQCISASED------PDKAVE-IVQKLPIINRLVLCYLINFLQVFAQPENVAHTKMDVSNLAM 153 (187)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHhhcC------HHHHHH-HHHhCCHHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Confidence 99999999999999999999886532 234566 457999999999999999999999754 789999999999
Q ss_pred hccccccCCCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 002837 317 CMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (875)
Q Consensus 317 ~FaP~LLrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIen 367 (875)
||||+|||++..++ ...+....+...+|+.||+|
T Consensus 154 vf~P~l~~~~~~~~-----------------~~~~~~~~~~~~~~~~lI~~ 187 (187)
T cd04389 154 VFAPNILRCTSDDP-----------------RVIFENTRKEMSFLRTLIEH 187 (187)
T ss_pred HHccccCCCCCCCH-----------------HHHHHccHHHHHHHHHHhcC
Confidence 99999999873211 12234455678999999986
No 37
>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins. Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.1e-34 Score=298.17 Aligned_cols=171 Identities=24% Similarity=0.408 Sum_probs=149.6
Q ss_pred CCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHH-HhcC-----CCCCCC-CCCcchhhhhhhhhhccCCCCCC
Q 002837 178 DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQE-YEQG-----KTEFSA-DEDAHVIGDCVKHVLRELPSSPV 250 (875)
Q Consensus 178 ~~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~-ld~G-----~~~~~~-~~D~h~VAslLK~fLReLPePLL 250 (875)
+..|.||.+|+.||+++|+.+|||||++|+..+|++++.. ++.+ ..++.. .+|+|+||++||.|||+||+|||
T Consensus 26 ~~~~~iv~~ci~~le~~gl~~EGIFR~sGs~~~i~~l~~~~~d~~~~~~~~id~~~~~~d~h~va~lLK~fLReLPePLi 105 (203)
T cd04374 26 DIGFKFVRKCIEAVETRGINEQGLYRVVGVNSKVQKLLSLGLDPKTSTPGDVDLDNSEWEIKTITSALKTYLRNLPEPLM 105 (203)
T ss_pred cccHHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCcCCCCccccccccccccHHHHHHHHHHHHHcCCCCcC
Confidence 3456689999999999999999999999999999999875 5654 233333 57999999999999999999999
Q ss_pred ChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCCCCccchhhhccccccCCCCCCC
Q 002837 251 PASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGE 330 (875)
Q Consensus 251 p~~ly~~~i~~~~~~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~FaP~LLrp~~~~~ 330 (875)
|+++|+.|+.+.+..+.++++..++. ++..||++|+.+|++|+.||++|+.|++.|||++.|||+||||+|||++..+
T Consensus 106 ~~~~y~~~i~~~~~~~~~~ri~~l~~-li~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Llr~~~~~- 183 (203)
T cd04374 106 TYELHNDFINAAKSENLESRVNAIHS-LVHKLPEKNREMLELLIKHLTNVSDHSKKNLMTVSNLGVVFGPTLLRPQEET- 183 (203)
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHhccccCCCCCcc-
Confidence 99999999999999888999999998 5579999999999999999999999999999999999999999999987311
Q ss_pred CCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 002837 331 CELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (875)
Q Consensus 331 ~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIen 367 (875)
.+++......+.+|++||+|
T Consensus 184 -----------------~~~~~~~~~~~~vve~LIeN 203 (203)
T cd04374 184 -----------------VAAIMDIKFQNIVVEILIEN 203 (203)
T ss_pred -----------------HHHHHHhHHHHHHhhhHhcC
Confidence 12344566778899999987
No 38
>cd04388 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase). This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell p
Probab=100.00 E-value=6.2e-34 Score=292.98 Aligned_cols=176 Identities=19% Similarity=0.285 Sum_probs=149.8
Q ss_pred hHHHhhhcCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcCC-CCCCCCCCcchhhhhhhhhhccCCCC
Q 002837 170 ILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLRELPSS 248 (875)
Q Consensus 170 L~~ll~~~~~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G~-~~~~~~~D~h~VAslLK~fLReLPeP 248 (875)
|.+.....+.+|.+|.+|+++|+++|+++|||||++|+.. +.++++.|+.+. ......+|+|+||++||.|||+||+|
T Consensus 5 ~~~~~~~~~~~P~iv~~ci~~IE~~GL~~eGIYRvsgs~~-~~~lk~~~d~~~~~~d~~~~dv~~va~~LK~ylReLPeP 83 (200)
T cd04388 5 LTEQFSPPDVAPPLLIKLVEAIEKKGLESSTLYRTQSSSS-LTELRQILDCDAASVDLEQFDVAALADALKRYLLDLPNP 83 (200)
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHhCCCCCceeeCCCccH-HHHHHHHHhcCCCCCCcccccHHHHHHHHHHHHHhCCCc
Confidence 4444444678999999999999999999999999999775 778999999863 33345789999999999999999999
Q ss_pred CCChhhHHHHHHHHh-cCCHHHHHHHHHHHHHh--hCChhHHHHHHHHHHHHHHHhcCcCCCCCCccchhhhccccccCC
Q 002837 249 PVPASCCTALLEAYK-IDRKEARISAMRSAILE--TFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRP 325 (875)
Q Consensus 249 LLp~~ly~~~i~~~~-~~~~eeri~~l~~lLl~--~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~FaP~LLrp 325 (875)
|||+++|+.|+++.+ ..+.++++..++.+ +. .||+.|+.||+|||.||++|++|+..|+|++.|||+||||+|||+
T Consensus 84 Lip~~~y~~fi~~~~~~~~~~~~~~~l~~l-i~~~~LP~~n~~tL~~Li~HL~rV~~~s~~NkM~~~NLAiVFgPtL~r~ 162 (200)
T cd04388 84 VIPAPVYSEMISRAQEVQSSDEYAQLLRKL-IRSPNLPHQYWLTLQYLLKHFFRLCQSSSKNLLSARALAEIFSPLLFRF 162 (200)
T ss_pred cCCHHHHHHHHHHHHccCCHHHHHHHHHHH-HhcccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHhHHHhhhhhcCC
Confidence 999999999999874 55677889999984 44 799999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 002837 326 LLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEY 368 (875)
Q Consensus 326 ~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny 368 (875)
+.... . .......+||+||.++
T Consensus 163 ~~~~~---~------------------~~~~~~~vvE~Li~~~ 184 (200)
T cd04388 163 QPASS---D------------------SPEFHIRIIEVLITSE 184 (200)
T ss_pred Ccccc---c------------------chhhHHHHHHHHHHHH
Confidence 74311 1 1234578899999863
No 39
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=99.97 E-value=6e-32 Score=310.47 Aligned_cols=324 Identities=20% Similarity=0.332 Sum_probs=238.8
Q ss_pred CCceEEEeeeeeeccC--------CCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceee--c-
Q 002837 16 SNTVFKSGPLFISSKG--------IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV--R- 84 (875)
Q Consensus 16 s~~V~KeG~L~l~KkG--------~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~--~- 84 (875)
++.++..|+||+.-.. ..+..-.++||||-++.|+||.+.+...|.+ .|.+.....+.. .
T Consensus 489 s~s~~~~~fLyc~~sa~~kl~~drr~~Ee~nr~wcVlg~g~ls~fen~~S~tP~~---------lI~~~Eivclav~~pd 559 (1186)
T KOG1117|consen 489 SQSTFLCGFLYCAPSAASKLSSDRRLREETNRKWCVLGGGFLSYFENEKSTTPNG---------LININEIVCLAVHPPD 559 (1186)
T ss_pred cccccccceeeechhhccCCCChhhhcccCCCceEEcCcchhhhhhhcCCCCCCc---------eeeccceEEEeecCCC
Confidence 3456777999966331 1245578999999999999999998876433 333333222111 1
Q ss_pred --cCCceeEEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHhhCCcch---------------------hccCCccccc
Q 002837 85 --EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAA---------------------LVMGHNGIFR 141 (875)
Q Consensus 85 --~~Kk~~fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~~aP~~a---------------------~~~g~~~if~ 141 (875)
....++|++..-...+|.|+|.+++.+++..|..+|.++.. |.-+ ..-.++|+|.
T Consensus 560 ~~pn~~~~f~fE~~l~~er~~~fgle~ad~l~~wt~aiaKhfv--p~~~e~l~a~~~~llg~l~~kd~~~~~~~r~gwfs 637 (1186)
T KOG1117|consen 560 TYPNTGFIFIFEIYLPGERVFLFGLETADALRKWTEAIAKHFV--PLFAENLLAADYDLLGRLFYKDCHALDQARKGWFS 637 (1186)
T ss_pred CCCCcCceeEEEEeecccceEEeecccHHHHHHHHHHHHHhcC--chHHHHhccchhhhhhhhhhcChhhhhhcccccee
Confidence 12234444333345589999999999999999999988763 2111 1112467777
Q ss_pred CCCCcc--------cc--------------CccccccCC-CCCCCccccc----------------------------ch
Q 002837 142 NDTNDT--------IE--------------GSFHQWRDK-RPVKSLVVGR----------------------------PI 170 (875)
Q Consensus 142 ~~~~~~--------~~--------------~s~~~~k~k-~~~k~~VFGv----------------------------pL 170 (875)
.+.+.. .+ .++-.+.+| ..+--..=|+ -|
T Consensus 638 l~gssl~~~~~~~~ve~d~~hlrrlqElsi~s~~~n~~K~~~l~lve~grTLYI~g~~rldft~W~~AIekaa~~~gt~L 717 (1186)
T KOG1117|consen 638 LDGSSLHFCLQMQPVEEDRMHLRRLQELSISSMVQNGEKLDVLVLVEKGRTLYIQGETRLDFTVWHTAIEKAAGTDGTAL 717 (1186)
T ss_pred cCCCeeEEecCCCcCchhHHHHHHHHHHhhhhccCCcccccceEEEeeccEEEEecCCcchHHHHHHHHHHHhcCCcchh
Confidence 554321 11 111111111 0000001122 22
Q ss_pred HHHhhhcCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcCCCCC---CCCCCcchhhhhhhhhhccCCC
Q 002837 171 LLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEF---SADEDAHVIGDCVKHVLRELPS 247 (875)
Q Consensus 171 ~~ll~~~~~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G~~~~---~~~~D~h~VAslLK~fLReLPe 247 (875)
.+..-..+.||+||..||.|+.++|+..|||||++|...++.+|...|-++...+ ..+.-+.+|+++||+|||+|++
T Consensus 718 qeqqLs~~dIPvIVd~CI~FVTqyGl~cegIYrknG~~~~~~~lLeslr~Dars~~lregeh~vedVtdvLk~Flrdldd 797 (1186)
T KOG1117|consen 718 QEQQLSKNDIPVIVDSCIAFVTQYGLGCEGIYRKNGDPLHISRLLESLRKDARSVKLREGEHQVEDVTDVLKRFLRDLDD 797 (1186)
T ss_pred hhhhccCCCCcEehHHHHHHHHHhCccceeeeccCCchHHHHHHHHHHhhccceeeccCCcchHHHHHHHHHHHHHhCCc
Confidence 2222225679999999999999999999999999999999999999998875332 3457799999999999999999
Q ss_pred CCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCCCCccchhhhccccccCCCC
Q 002837 248 SPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLL 327 (875)
Q Consensus 248 PLLp~~ly~~~i~~~~~~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~FaP~LLrp~~ 327 (875)
||||.++|..|+++....+.++++..+.. ++..||..||.||+.||.||++|..+++.|+|+++|||+||||+||...-
T Consensus 798 pLft~~~~~~w~eaae~~d~~Er~~rY~~-lI~~lp~VnRaTLkalIgHLy~Vqk~s~~N~mnvhNLAlVFa~sLFqTdg 876 (1186)
T KOG1117|consen 798 PLFTKELYPYWIEAAETQDDKERIKRYGA-LIRSLPGVNRATLKALIGHLYRVQKCSEINQMNVHNLALVFAPSLFQTDG 876 (1186)
T ss_pred cccchhhhhhHHHhhhccchHHHHHHHHH-HHhhcccccHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhheecCC
Confidence 99999999999999999999999999998 55799999999999999999999999999999999999999999998751
Q ss_pred CCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCcc
Q 002837 328 AGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (875)
Q Consensus 328 ~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~~~ 376 (875)
+ ..+..+|++.||.+|..||.-+.
T Consensus 877 -----q--------------------dehevnVledLingYvvVF~v~e 900 (1186)
T KOG1117|consen 877 -----Q--------------------DEHEVNVLEDLINGYVVVFEVDE 900 (1186)
T ss_pred -----C--------------------chhhhhHHHHHhcCceEEEEecH
Confidence 1 13567899999999999998654
No 40
>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases. GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.
Probab=99.97 E-value=6.3e-31 Score=264.39 Aligned_cols=170 Identities=28% Similarity=0.486 Sum_probs=154.6
Q ss_pred CCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcCCCCC--CCCCCcchhhhhhhhhhccCCCCCCChhhHH
Q 002837 179 GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEF--SADEDAHVIGDCVKHVLRELPSSPVPASCCT 256 (875)
Q Consensus 179 ~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G~~~~--~~~~D~h~VAslLK~fLReLPePLLp~~ly~ 256 (875)
.||.+|..|+.||+++|+.+|||||++|+..+++++++.++.|.... ...+|+|+||++||.|||+||+||||.+.|+
T Consensus 2 ~vP~~l~~~~~~l~~~g~~~egiFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~Lr~Lp~pli~~~~~~ 81 (174)
T smart00324 2 PIPIIVEKCIEYLEKRGLDTEGIYRVSGSKSRVKELREAFDSGPDPDLDLSEYDVHDVAGLLKLFLRELPEPLIPYELYE 81 (174)
T ss_pred CCChHHHHHHHHHHHcCCCccceeecCCcHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHHHhCCCccCCHHHHH
Confidence 58999999999999999999999999999999999999999997544 6789999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCCCCccchhhhccccccCCCCCCCCCcccc
Q 002837 257 ALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDD 336 (875)
Q Consensus 257 ~~i~~~~~~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~FaP~LLrp~~~~~~~led~ 336 (875)
.|+.+....+..+++..++. ++.+||+.|+.+|.+|+.||+.|+.|++.|+|++.|||+||||+|+|++..+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~-~~~~Lp~~~~~~L~~l~~~l~~i~~~~~~n~M~~~nLa~~f~P~l~~~~~~~~------ 154 (174)
T smart00324 82 EFIEAAKVEDETERLRALRE-LISLLPPANRATLRYLLAHLNRVAEHSEENKMTARNLAIVFGPTLLRPPDGEV------ 154 (174)
T ss_pred HHHHHHhCCCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhcccCCCCcccH------
Confidence 99999988888899999998 55799999999999999999999999999999999999999999999873210
Q ss_pred cccCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 002837 337 FDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (875)
Q Consensus 337 ~~~~g~~s~q~~~a~~~~~~~~~iVe~LIen 367 (875)
.......+...+|++||+|
T Consensus 155 ------------~~~~~~~~~~~~i~~li~~ 173 (174)
T smart00324 155 ------------ASLKDIRHQNTVVETLIEN 173 (174)
T ss_pred ------------HHHHHHHHHHHHHHHHHhc
Confidence 1234456788999999987
No 41
>KOG1450 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=99.97 E-value=5.2e-31 Score=303.53 Aligned_cols=319 Identities=18% Similarity=0.281 Sum_probs=232.6
Q ss_pred CCCcEEEEEEEeCCeeeEecCCCCCCCCC---CceeeeeeCceEeCCCcce--eeccCCceeEEEEcCCCCCceEEEEeC
Q 002837 34 WKSWKKRWFILTRTSLVFFKNDPSALPQR---GGEVNLTLGGIDLNNSGSV--VVREDKKLLTVLFPDGRDGRAFTLKAE 108 (875)
Q Consensus 34 ~ksWKKRWFVL~~~~L~YYKd~~~~~p~~---~~e~~i~Lg~I~L~~~~sV--~~~~~Kk~~fiIt~~~~~gRty~LqAd 108 (875)
...|..-|..+.+..++||.+......-+ .........+..+.+.... ..+..++ +.+......+..|+++-.
T Consensus 270 ~~~~~~~~~~~t~~~~~~~~~~~~~~~s~~~~~~~~~~~~~sps~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 347 (650)
T KOG1450|consen 270 STVWETSTDALTGNPLYYYSDTGSTTWSGHHSPPEKAEIAQSPSLSPAMVSASKNKSTRK--NTLWLTTNRTSKVLNRSH 347 (650)
T ss_pred CcccccchhhcccccceeecccCcccccCCCCccccccCCCCcccchhhhccccccCCcc--ceeeeeecCCceeeecCC
Confidence 34499999999999999999876654222 1111111111222221110 0112222 233333344678999999
Q ss_pred CHHHHHHHHHHHHHHHhhCCcchhc--cCCc----c--------------------cccCCC-Cccc---c---------
Q 002837 109 TSEDLYEWKTALELALAQAPSAALV--MGHN----G--------------------IFRNDT-NDTI---E--------- 149 (875)
Q Consensus 109 TeeE~~eWv~AI~~al~~aP~~a~~--~g~~----~--------------------if~~~~-~~~~---~--------- 149 (875)
++.....|..++..++...++.+.. .|.. + .+.... +..+ .
T Consensus 348 net~~~d~~~~~~~~~~~~~~~~s~~s~g~~~~~~P~s~~~~~~~~~~~~~~sp~ss~p~~~~ss~ist~~~~~~~~~~~ 427 (650)
T KOG1450|consen 348 NETSFEDWSSNLPEVINELPNSASPNSQGDLESTLPESDSPESHTSEPEEDVSPVSSKPLEGLSSPISTTLGPECHEQQD 427 (650)
T ss_pred CCccccchhhcchhhhhccCCCCCCCCCCCCCCCCCCCccccccccCcccccCcccccccccccccceecCCcccccccc
Confidence 9999999999999998865553322 1100 0 000000 0000 0
Q ss_pred ------------CccccccCCCC-CCCcccccchHHHhhh-cCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHH
Q 002837 150 ------------GSFHQWRDKRP-VKSLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRV 215 (875)
Q Consensus 150 ------------~s~~~~k~k~~-~k~~VFGvpL~~ll~~-~~~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~ 215 (875)
+.....+.++. ....|||++|+.+|++ .+.||.||..|+..|+..|++..||||++|+...|.+|+
T Consensus 428 ~~~~l~~~~s~rp~v~s~~~~g~~k~~~vFGs~Lealc~rE~~~vP~~V~~c~~~IE~~GLd~~GiYRVsgnl~~Vnklr 507 (650)
T KOG1450|consen 428 PQKKLTKNFSTRPIVQSSREPGKPKFDKVFGSPLEALCQRENGLVPKIVRLCIEHIEKFGLDSDGIYRVSGNLASVNKLR 507 (650)
T ss_pred hHHHHHHhhhccchhhhccccCccccCcccCccHHHHhhccCCCcchHHHHHHHHHhhhcccCCceeeecchHHHHHHHH
Confidence 00111122222 2378999999999987 456999999999999999999999999999999999999
Q ss_pred HHHhcCC-CCC--CCCCCcchhhhhhhhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHH
Q 002837 216 QEYEQGK-TEF--SADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQR 292 (875)
Q Consensus 216 ~~ld~G~-~~~--~~~~D~h~VAslLK~fLReLPePLLp~~ly~~~i~~~~~~~~eeri~~l~~lLl~~LP~~N~~lL~~ 292 (875)
.+++... ..+ ..+.|+|+|+++||.|||+||+||+|..++..|..+........+...+..+ +..||.+|+.||+|
T Consensus 508 ~~~d~d~~l~l~~~~~~dihai~galK~ffreLpdpL~p~~l~~~f~~a~~~~~~~~r~~~~~~l-i~~lP~~n~~Tlr~ 586 (650)
T KOG1450|consen 508 EQSDQDNSLDLADDRWDDIHAITGALKTFFRELPDPLFPKALSKDFTVALQGELSHTRVDKVEEL-IGLLPDANYQTLRY 586 (650)
T ss_pred HhcCccccccccccchhHHHHHHHHHHHHHHhcCCcccChhHhHHHHHHhcccchhhHHHHHHHH-HhhCCCcchhHHHH
Confidence 9999543 222 3347999999999999999999999999999999999999989999999995 57999999999999
Q ss_pred HHHHHHHHhcCcCCCCCCccchhhhccccccCCCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 002837 293 ILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (875)
Q Consensus 293 Ll~~L~~Va~~s~~NKMta~NLAi~FaP~LLrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF 372 (875)
|+.||++|..|++.|||+.+||||||||+|+.+.... ++ .+.....+..||+.||+++..+|
T Consensus 587 lv~HL~rv~shs~kNrMs~~NLaIVfgpTl~~~~~~~-----------~~-------~a~~~~~~~~ivq~lle~~~~~f 648 (650)
T KOG1450|consen 587 LVRHLRRVLSHSDKNRMSRHNLAIVFGPTLIKPEQET-----------SS-------EAIHSTYQSQIVQLLLENVSSAF 648 (650)
T ss_pred HHHHHHHHHhccccccccccceEEEeccccccccccc-----------cc-------hhhHHhHHHHHHHHHHHhhHhhc
Confidence 9999999999999999999999999999999975211 11 12344567899999999999999
Q ss_pred C
Q 002837 373 D 373 (875)
Q Consensus 373 ~ 373 (875)
+
T Consensus 649 ~ 649 (650)
T KOG1450|consen 649 G 649 (650)
T ss_pred c
Confidence 6
No 42
>KOG4270 consensus GTPase-activator protein [Signal transduction mechanisms]
Probab=99.97 E-value=8.5e-30 Score=292.99 Aligned_cols=206 Identities=21% Similarity=0.267 Sum_probs=175.8
Q ss_pred CCCCCCCcccccchHHHhhh----cCCCcHHHHHHHH-HHH-hcCCcccCccccCCCHHHHHHHHHHHhcCCCCCCCCCC
Q 002837 157 DKRPVKSLVVGRPILLALED----IDGGPSFLEKALR-FLE-KFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADED 230 (875)
Q Consensus 157 ~k~~~k~~VFGvpL~~ll~~----~~~VP~iL~~~i~-~Le-~~Gl~~EGIFRisG~~~~V~~L~~~ld~G~~~~~~~~D 230 (875)
........||||++..+... .+.||.++.-+.. +|+ ++|++.|||||+.|....++.+++.||.|........|
T Consensus 138 rals~~~~vfgv~~~s~Q~s~~~~~n~vp~i~~l~~~~~l~~e~Gl~eEGlFRi~~~~sk~e~lr~~ld~g~v~~~~~iD 217 (577)
T KOG4270|consen 138 RALSASETVFGVSTEAMQLSYDPRGNFVPLILHLLQSGRLLLEGGLKEEGLFRINGEASKVERLREALDCGVVPDQLYID 217 (577)
T ss_pred ccccchhhhhcchHHhhhcccccCCCcchhhhHhhhhhhhhhhcCccccceeccCCCchHHHHHHHHHcCCcccccccCC
Confidence 33444568999999777654 3447999998888 666 48899999999999999999999999999644433789
Q ss_pred cchhhhhhhhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCCCC
Q 002837 231 AHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMT 310 (875)
Q Consensus 231 ~h~VAslLK~fLReLPePLLp~~ly~~~i~~~~~~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMt 310 (875)
||+||++||.|||+||+|++++++|+.|+.+....+.+++...++. ++.+||+.|+.+|+|++.||+.|++++++|||+
T Consensus 218 vH~~agllKayLRELPepvl~~nL~~e~~qv~~~~~e~~~~q~lr~-~~~~LPp~n~slL~yli~flA~v~~~~~vNKMs 296 (577)
T KOG4270|consen 218 VHCLAGLLKAYLRELPEPVLTFNLYKEWTQVQNCENEDEKVQLLRQ-CLQKLPPTNYSLLRYLIRFLADVVEKEHVNKMS 296 (577)
T ss_pred HHHHHHHHHHHHHhCCCcCCCcccCHHHHHHHhccCHHHHHHHHHH-HHHhCCcchHHHHHHHHHHHHHHHHHhhhcccc
Confidence 9999999999999999999999999999999999999999999998 567999999999999999999999999999999
Q ss_pred ccchhhhccccccCCCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCcccc
Q 002837 311 PSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESLH 378 (875)
Q Consensus 311 a~NLAi~FaP~LLrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~~~~~ 378 (875)
++||||||||+|+|+.. ....+..+.+..+.+..+|+..|++++..|++..-.
T Consensus 297 ~~NlAiV~gPNl~~~~~---------------p~~~l~~avqvs~~~~~lie~~l~~~~~~~~g~~~~ 349 (577)
T KOG4270|consen 297 ARNLAIVFGPNLLWMKD---------------PLTALMYAVQVSNFLKGLIEKTLEERDTSFPGELEF 349 (577)
T ss_pred hhhceeEecCCccccCC---------------hHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccc
Confidence 99999999999999872 123344455555666778888888888888887643
No 43
>cd04380 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins. OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPas
Probab=99.96 E-value=1.6e-29 Score=265.07 Aligned_cols=158 Identities=16% Similarity=0.244 Sum_probs=138.2
Q ss_pred CcccccchHHHhhh-----------------------cCCCcHHHHHHHHHHHhcCCcccCccccCCCHHH----HHHHH
Q 002837 163 SLVVGRPILLALED-----------------------IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEE----VDRRV 215 (875)
Q Consensus 163 ~~VFGvpL~~ll~~-----------------------~~~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~----V~~L~ 215 (875)
.++||.+|+.+..- ...||.+|.+|++||+++|+.+|||||++|+... ++.++
T Consensus 10 ~s~fG~sl~~L~~~~~p~~~~~~~~~~~~~~~~~~~~~~~iP~~l~~~i~~L~~~gl~~eGiFR~~G~~~~~~~~i~~l~ 89 (220)
T cd04380 10 PSCFGSSLETLIRLPDPGIRNLIDQLELGDNPDYSEVPLSIPKEIWRLVDYLYTRGLAQEGLFEEPGLPSEPGELLAEIR 89 (220)
T ss_pred cccccccHHHHhcCCchHhhccccccccccCCCCCCCccccCHHHHHHHHHHHHcCCcccCcccCCCcccchHHHHHHHH
Confidence 45788888776641 1248999999999999999999999999999999 99999
Q ss_pred HHHhcCCCCCCCCCCcchhhhhhhhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHh-hCChhHHHHHHHHH
Q 002837 216 QEYEQGKTEFSADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILE-TFPEPNRRLLQRIL 294 (875)
Q Consensus 216 ~~ld~G~~~~~~~~D~h~VAslLK~fLReLPePLLp~~ly~~~i~~~~~~~~eeri~~l~~lLl~-~LP~~N~~lL~~Ll 294 (875)
+.+|.|.... ...|+|+||++||.|||+||+||||+++|+.|+++... +. ..++. +++ .||++|+.+|.||+
T Consensus 90 ~~ld~~~~~~-~~~~~~~va~~LK~fLr~LpePlip~~~y~~~~~~~~~-~~----~~~~~-ll~~~LP~~n~~~l~~L~ 162 (220)
T cd04380 90 DALDTGSPFN-SPGSAESVAEALLLFLESLPDPIIPYSLYERLLEAVAN-NE----EDKRQ-VIRISLPPVHRNVFVYLC 162 (220)
T ss_pred HHHhCCCCCC-CCCCHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHhcC-cH----HHHHH-HHHhhCCHHHHHHHHHHH
Confidence 9999985433 67899999999999999999999999999999998722 21 23444 557 99999999999999
Q ss_pred HHHHHHhcCcCCCCCCccchhhhccccccCCCC
Q 002837 295 RMMHTISSHAHENRMTPSAVAACMAPLLLRPLL 327 (875)
Q Consensus 295 ~~L~~Va~~s~~NKMta~NLAi~FaP~LLrp~~ 327 (875)
.||++|+.+++.|+|++.|||+||||+|||++.
T Consensus 163 ~fL~~v~~~~~~nkM~~~nLA~vF~P~Llr~~~ 195 (220)
T cd04380 163 SFLRELLSESADRGLDENTLATIFGRVLLRDPP 195 (220)
T ss_pred HHHHHHHHHHHhhCCCHHHhHHHhcchhccCCc
Confidence 999999999999999999999999999999984
No 44
>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.
Probab=99.96 E-value=5.7e-29 Score=247.25 Aligned_cols=168 Identities=32% Similarity=0.540 Sum_probs=151.9
Q ss_pred cHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcCCCC-CCCCCCcchhhhhhhhhhccCCCCCCChhhHHHHH
Q 002837 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE-FSADEDAHVIGDCVKHVLRELPSSPVPASCCTALL 259 (875)
Q Consensus 181 P~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G~~~-~~~~~D~h~VAslLK~fLReLPePLLp~~ly~~~i 259 (875)
|.+|..|+.||+++|+.++||||++|+..+++.++..++.|... .....|+|++|++||.|||+||+||||.++|+.|+
T Consensus 1 P~~l~~~~~~l~~~~~~~~giFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~va~~lK~~l~~Lp~pli~~~~~~~~~ 80 (169)
T cd00159 1 PLIIEKCIEYLEKNGLNTEGIFRVSGSASKIEELKKKFDRGEDIDDLEDYDVHDVASLLKLYLRELPEPLIPFELYDEFI 80 (169)
T ss_pred ChHHHHHHHHHHHcCCCcCCeeeCCCcHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHcCCCccCCHHHHHHHH
Confidence 88999999999999999999999999999999999999999755 56789999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCCCCccchhhhccccccCCCCCCCCCccccccc
Q 002837 260 EAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDM 339 (875)
Q Consensus 260 ~~~~~~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~FaP~LLrp~~~~~~~led~~~~ 339 (875)
.+....+...++..++. ++..||+.|+.+|.+|+.||++|+.+++.|+|++.|||+||||+|++++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~-~i~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~M~~~nLa~~f~p~l~~~~~~~---------- 149 (169)
T cd00159 81 ELAKIEDEEERIEALKE-LLKSLPPENRDLLKYLLKLLHKISQNSEVNKMTASNLAIVFAPTLLRPPDSD---------- 149 (169)
T ss_pred HHHHcCCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHccccCCCCCcc----------
Confidence 99998888999999998 5569999999999999999999999999999999999999999999987321
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 002837 340 NGDNSAQLLAAANAANNAQAIIATLLEE 367 (875)
Q Consensus 340 ~g~~s~q~~~a~~~~~~~~~iVe~LIen 367 (875)
............+|++||.|
T Consensus 150 --------~~~~~~~~~~~~~~~~li~~ 169 (169)
T cd00159 150 --------DELLEDIKKLNEIVEFLIEN 169 (169)
T ss_pred --------HHHHHHhHHHHHHHHHHHhC
Confidence 11223445677899999975
No 45
>KOG2200 consensus Tumour suppressor protein p122-RhoGAP/DLC1 [Signal transduction mechanisms]
Probab=99.96 E-value=1.5e-29 Score=283.92 Aligned_cols=211 Identities=24% Similarity=0.339 Sum_probs=173.6
Q ss_pred CCcccccchHHHhhh-cCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcCCC---CCCCCCCcchhhhh
Q 002837 162 KSLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT---EFSADEDAHVIGDC 237 (875)
Q Consensus 162 k~~VFGvpL~~ll~~-~~~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G~~---~~~~~~D~h~VAsl 237 (875)
.+.||||||..++++ +-.||.+|.+++.||+++|++++||||++|...+|+.|++.++..-. ..++....|+||.+
T Consensus 297 d~~vFGVPL~vll~rtG~~lP~~iQq~m~~lr~~~Le~vGifRksGvksRIk~Lrq~lE~~~~~~~~~~d~~~~~DvAdl 376 (674)
T KOG2200|consen 297 DGGVFGVPLTVLLQRTGQPLPLSIQQAMRYLRERGLETVGIFRKSGVKSRIKNLRQMLEAKFYNGEFNWDSQSAHDVADL 376 (674)
T ss_pred CCceeecCceeeeccCCCcCcHHHHHHHHHHHHhCccccceeecccHHHHHHHHHHHHhhcccCcccccchhhhhHHHHH
Confidence 468999999999987 34699999999999999999999999999999999999999887532 22445678999999
Q ss_pred hhhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCCCCccchhhh
Q 002837 238 VKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAAC 317 (875)
Q Consensus 238 LK~fLReLPePLLp~~ly~~~i~~~~~~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~ 317 (875)
||.|||+||+||||.++.+.|+.+++.....+++.+++.+|+ .||.+||.+|+.|+.||++|+.+++.|+||+.|||+|
T Consensus 377 LKqffRdLPePL~t~k~~~aF~~i~~~~pkkqrlqAl~~ail-lLPDeNReaLktLL~FL~~V~an~e~N~MT~~Nlsvc 455 (674)
T KOG2200|consen 377 LKQFFRDLPEPLFTVKYSEAFAQIYQLVPKKQRLQALQLAIL-LLPDENREALKTLLEFLNDVIANEEENQMTLMNLSVC 455 (674)
T ss_pred HHHHHHhCCcccchhhHHHHHHHHHhcCcHHHHHHHHHHHHH-hCCcccHHHHHHHHHHHHHHHHhHhhcccchhhhhhh
Confidence 999999999999999999999999999999999999998877 9999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCC---CcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCcc
Q 002837 318 MAPLLLRPLLAGEC---ELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (875)
Q Consensus 318 FaP~LLrp~~~~~~---~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~~~ 376 (875)
|||+||........ .+-.-....|.... ..+..+.-+..++..||.+++.+|.-..
T Consensus 456 mAPsLF~l~~~~~d~spr~~~~k~~~g~p~~---kel~~a~aaa~~l~~mI~y~k~Lf~VP~ 514 (674)
T KOG2200|consen 456 MAPSLFHLNALKLDSSPRVRQKKSETGKPDQ---KELNEALAAAQGLAHMIKYQKLLFTVPS 514 (674)
T ss_pred hcchHHhhccCCCCCCccccccccccCCCch---HHHHHHHHHHHHHHHHHHHHHHHhhchH
Confidence 99999975432111 00000000111111 1122333456789999999999998765
No 46
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=99.96 E-value=1.1e-29 Score=293.68 Aligned_cols=185 Identities=21% Similarity=0.386 Sum_probs=163.1
Q ss_pred CCCCCcccccchHHHh----h-hcCCCcHHHHHHHHHHH-hcCCcccCccccCCCHHHHHHHHHHHhcC-CCCC---CCC
Q 002837 159 RPVKSLVVGRPILLAL----E-DIDGGPSFLEKALRFLE-KFGTKVEGILRQAADVEEVDRRVQEYEQG-KTEF---SAD 228 (875)
Q Consensus 159 ~~~k~~VFGvpL~~ll----~-~~~~VP~iL~~~i~~Le-~~Gl~~EGIFRisG~~~~V~~L~~~ld~G-~~~~---~~~ 228 (875)
...++.|||.||-..+ . +.-++|+||.+|++||+ .+|+..|||||++|.+..|+.|++.||.+ +.++ ..+
T Consensus 893 ~~~qTgIFG~~~~~kisv~t~~n~s~lP~VVyrCvEyle~~RgieEeGIyRlSGsaT~Ik~Lke~Fd~~~n~di~~~d~E 972 (1112)
T KOG4269|consen 893 SVKQTGIFGLPLNVKISVVTKRNVSGLPYVVYRCVEYLESCRGIEEEGIYRLSGSATDIKALKEQFDENVNKDILSMDSE 972 (1112)
T ss_pred cceeceeccccceeeEeeeeeecccCCchHHHHHHHHHHhccccchhceEEecccHHHHHHHHHHhccccCchhhhcccc
Confidence 3446889997764333 2 24579999999999999 59999999999999999999999999998 4333 457
Q ss_pred CCcchhhhhhhhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCC
Q 002837 229 EDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENR 308 (875)
Q Consensus 229 ~D~h~VAslLK~fLReLPePLLp~~ly~~~i~~~~~~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NK 308 (875)
.|||+|||+||+|||+||+|||+.++|..|.......+...+...+..+| ..||++|+.+|.+|+.||.+|+.++.+||
T Consensus 973 ~dVn~IaGlLKLYlR~LP~~Ll~de~~~~F~~~i~~~npva~~~~~~~li-~slP~aNl~l~~~LlehL~RI~e~ekvNK 1051 (1112)
T KOG4269|consen 973 MDVNAIAGLLKLYLRELPEPLLTDEMYPLFEEGIALSNPVAKEGCMCDLI-SSLPPANLALFLFLLEHLKRIAEKEKVNK 1051 (1112)
T ss_pred ccHHHHHHHHHHHHHhCCccccchhhhHHHHhhccCCCHHHHHhhHHHHH-HhCCChhHHHHHHHHHHHHHHHhhccccc
Confidence 89999999999999999999999999999999999999999999999955 68999999999999999999999999999
Q ss_pred CCccchhhhccccccCCCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCcc
Q 002837 309 MTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (875)
Q Consensus 309 Mta~NLAi~FaP~LLrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~~~ 376 (875)
|+++|||+||+|+|++|. .+...||.||+.||.+..
T Consensus 1052 MnlrNlciVFsPTLniPs--------------------------------e~~~~li~n~d~if~dv~ 1087 (1112)
T KOG4269|consen 1052 MNLRNLCIVFSPTLNIPS--------------------------------EIESKLILNYDHIFTDVM 1087 (1112)
T ss_pred ccccceeeeecccccCcH--------------------------------Hhhhhhccchhhhhccch
Confidence 999999999999999986 235567788999998864
No 47
>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation. Like all other GTPases, Rho proteins act as molecular switches, with an active GTP-bound form and an inactive GDP-bound form. The active conformation is promoted by guanine-nucleotide exchange factors, and the inactive state by GTPase-activating proteins (GAPs) which stimulate the intrinsic GTPase activity of small G proteins. This entry is a Rho/Rac/Cdc42-like GAP domain, that is found in a wide variety of large, multi-functional proteins []. A number of structure are known for this family [, , ]. The domain is composed of seven alpha helices. This domain is also known as the breakpoint cluster region-homology (BH) domain.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1RGP_A 1AM4_B 1GRN_B 2NGR_B 1OW3_A 1TX4_A 3BYI_B 1XA6_A 3FK2_B 1F7C_A ....
Probab=99.95 E-value=2.4e-28 Score=239.51 Aligned_cols=145 Identities=31% Similarity=0.540 Sum_probs=136.2
Q ss_pred cHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcCCCC--CCCCCCcchhhhhhhhhhccCCCCCCChhhHHHH
Q 002837 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE--FSADEDAHVIGDCVKHVLRELPSSPVPASCCTAL 258 (875)
Q Consensus 181 P~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G~~~--~~~~~D~h~VAslLK~fLReLPePLLp~~ly~~~ 258 (875)
|.+|..|++||+++|+.++||||++|+..+++++++.|+.|... ....+|+|+||++||.||++||+||||.++|+.|
T Consensus 1 P~~l~~~~~~l~~~g~~~~gIFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~L~~lp~pli~~~~~~~~ 80 (151)
T PF00620_consen 1 PRILNDCVDYLEKKGLETEGIFRIPGSSSEVQELRNKIDSGEPPNENLENYDVHDVASLLKRFLRELPEPLIPSELYDKF 80 (151)
T ss_dssp EHHHHHHHHHHHHHTTTSTTTTTSS--HHHHHHHHHHHHTTTTCSTTGTTSTHHHHHHHHHHHHHHSSSTSTTHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCCCCceeccCCHHHHHHHHHHHHhhhcccccccccChhhccccceeeeeccccchhhhhHHHHH
Confidence 88999999999999999999999999999999999999999765 6788999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCCCCccchhhhccccccCCC
Q 002837 259 LEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPL 326 (875)
Q Consensus 259 i~~~~~~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~FaP~LLrp~ 326 (875)
+.+.+..+.++++..++. ++.+||..|+.+|.+|+.||+.|+.+++.|+||+.|||+||||+|++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~-~l~~lp~~~~~~l~~l~~~l~~v~~~~~~n~m~~~~La~~f~P~l~~~~ 147 (151)
T PF00620_consen 81 IAASKSADEEEQIEAIRS-LLQSLPPSNRSLLKYLIELLSKVSDNSEINKMTAENLAIIFAPSLFRPP 147 (151)
T ss_dssp HHHHTSSSHHHHHHHHHH-HHTTS-HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTGS
T ss_pred hhhhccchhhHHHHHHHH-hhhccccccceeehhcccchhhhhcccccccCCHHHHHHHHHhHcCCCC
Confidence 998888899999999998 5679999999999999999999999999999999999999999999987
No 48
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=99.95 E-value=1.1e-27 Score=261.10 Aligned_cols=201 Identities=25% Similarity=0.354 Sum_probs=174.8
Q ss_pred CCCCCCCcccccchHHHhhh---cCCCcHHHHHHHHHHHhcC-CcccCccccCCCHHHHHHHHHHHhcCCCCCCCCC-Cc
Q 002837 157 DKRPVKSLVVGRPILLALED---IDGGPSFLEKALRFLEKFG-TKVEGILRQAADVEEVDRRVQEYEQGKTEFSADE-DA 231 (875)
Q Consensus 157 ~k~~~k~~VFGvpL~~ll~~---~~~VP~iL~~~i~~Le~~G-l~~EGIFRisG~~~~V~~L~~~ld~G~~~~~~~~-D~ 231 (875)
.+.++.+.-||+||..+.+. +..||.+|..|+.||..+| +.+|||||.+++...+.++.+.+++|..+..+.+ |+
T Consensus 245 pr~pl~t~qFgvpLqf~~~~~~e~~~iPpiv~~tV~~L~~~~kl~tEG~FRrS~s~~~i~~~q~~~n~G~pVdle~~~~~ 324 (467)
T KOG4406|consen 245 PRPPLPTQQFGVPLQFIPEKNPEGESIPPIVRSTVEYLQAHGKLTTEGLFRRSASRSPIREVQELYNTGEPVDLEVYKDL 324 (467)
T ss_pred CCCCCchhhcCccHHHhcccCcccCCCCcHHHHHhhhhhccceecccceeccccCccchHHHHHHhcCCCcccHHHhccc
Confidence 45677899999999888764 4679999999999999999 9999999999999999999999999985555454 49
Q ss_pred chhhhhhhhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCCCCc
Q 002837 232 HVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTP 311 (875)
Q Consensus 232 h~VAslLK~fLReLPePLLp~~ly~~~i~~~~~~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta 311 (875)
|..|.++|.|||+||+||+++++|..+....... ...+...++.++-.+||+.|+.++++++.||.+|+.|+.+|+||+
T Consensus 325 h~~avllKtF~R~LpePL~t~~~y~~lt~~~~~~-~~~~s~s~~qli~~~lp~~ny~L~r~i~sfL~~Is~~~~~N~M~~ 403 (467)
T KOG4406|consen 325 HAPAVLLKTFLRSLPEPLLTFRLYESLTGFSNVD-KSLRSSSTDQLIRPTLPEENYSLLRYISSFLVQISDNSKENKMTA 403 (467)
T ss_pred hhhHHHHHHHHhcCCcccchhhhhhhhhccccch-HHhhhhHHHHHhhccCChhHHHHHHHHHHHHHHHHHhHHHhhhcc
Confidence 9999999999999999999999999887766554 467788888866666999999999999999999999999999999
Q ss_pred cchhhhccccccCCCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCccc
Q 002837 312 SAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESL 377 (875)
Q Consensus 312 ~NLAi~FaP~LLrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~~~~ 377 (875)
.|||+||||+|+|+.... + .+.+.+.++.++++||+||..||..+..
T Consensus 404 sNLa~vfGpnl~w~~~~s---~----------------tl~q~npin~F~~~li~~~~~~f~~~~~ 450 (467)
T KOG4406|consen 404 SNLAVVFGPNLLWAQDES---L----------------TLKQINPINKFTKFLIEHYKKLFTTPEN 450 (467)
T ss_pred ccceeeeccccccccccc---c----------------cHHHhccHHHHHHHHHHhhhhccCCCCC
Confidence 999999999999987211 0 1234567889999999999999998764
No 49
>KOG2710 consensus Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=99.94 E-value=1.2e-26 Score=258.33 Aligned_cols=205 Identities=22% Similarity=0.371 Sum_probs=169.1
Q ss_pred CCCcccccchHHHhhh-------------cCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcC-----C
Q 002837 161 VKSLVVGRPILLALED-------------IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG-----K 222 (875)
Q Consensus 161 ~k~~VFGvpL~~ll~~-------------~~~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G-----~ 222 (875)
..+.+||+++...+.. ...||.+|.+|+.||.++|+.+.||||+.|+..+|++|++.|+.+ +
T Consensus 62 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~IP~vv~~c~~~lk~~~ls~~GIFRv~gs~kRvr~L~~~fd~~p~y~~~ 141 (412)
T KOG2710|consen 62 LDGLLLKVPLELSSKVASAETRLQSLNPGEGQIPRVVAKCGQYLKKNGLSVVGIFRVAGSIKRVRQLREEFDSPPDYGID 141 (412)
T ss_pred cceeeeccchhhhhhhhhccchhccCCccceeCcHHHHHHHHHHHHcCceeeeeeecCCchHHHHHHHHHhccCcccccc
Confidence 3455677776555322 124899999999999999999999999999999999999999998 3
Q ss_pred CCCCCCCCcchhhhhhhhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhc
Q 002837 223 TEFSADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISS 302 (875)
Q Consensus 223 ~~~~~~~D~h~VAslLK~fLReLPePLLp~~ly~~~i~~~~~~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~ 302 (875)
...+.++++|+||++||.|||+||+||||.++|+.|+..+....+++++..++. ++..||++|+.||.+|+.||+.|+.
T Consensus 142 ~~~~e~~nvHDvAaLLK~flr~lp~pLLP~~LY~~f~~p~kl~~e~e~~~~l~l-~~~llp~~nr~~l~~ll~fL~~~a~ 220 (412)
T KOG2710|consen 142 VNDWEDFNVHDVAALLKEFLRDLPDPLLPLELYESFINPAKLEPETEQLGVLQL-LIYLLPKCNRDTLEVLLGFLSVVAS 220 (412)
T ss_pred ccccccccHHHHHHHHHHHHHhCCcccCCHHHHHHHhhhhcCCcHHHHHHHHHH-HHHhcCccchhHHHHHHhhhhhhhc
Confidence 455678999999999999999999999999999999999999988899999997 5569999999999999999999999
Q ss_pred CcCCC-----------CCCccchhhhccccccCCCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 002837 303 HAHEN-----------RMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENI 371 (875)
Q Consensus 303 ~s~~N-----------KMta~NLAi~FaP~LLrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~I 371 (875)
|++.| +|++.|||+||+|+|+.........+.- ...+..+ ....+..++.+||+||+.+
T Consensus 221 ~s~d~~~kdg~~~~gnkm~~~nlatIf~P~iL~k~~~~~~~~s~--~~~~~~s--------~~~~i~~~~~~~~~N~e~~ 290 (412)
T KOG2710|consen 221 HAEDNIGKDGQEVNGNKMTSENLATIFGPNILYKLKGSHKELSV--TGVANES--------ESEAIVNFAQMMIENLEAL 290 (412)
T ss_pred ccccccccccccccCcccchhhhhhhhcchhhhcccCCCccccc--ccccchh--------hHHHHHHHHHHhhhhHHHh
Confidence 99998 9999999999999999953211111211 1111111 2234668899999999999
Q ss_pred CCCcc
Q 002837 372 FDDES 376 (875)
Q Consensus 372 F~~~~ 376 (875)
|..+.
T Consensus 291 f~ip~ 295 (412)
T KOG2710|consen 291 FQIPP 295 (412)
T ss_pred hcCCc
Confidence 99544
No 50
>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=99.94 E-value=2.6e-27 Score=268.73 Aligned_cols=241 Identities=19% Similarity=0.196 Sum_probs=217.7
Q ss_pred CCCCCcccccchHHHhhhcCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcCCCCCCCCCCcchhhhhh
Q 002837 159 RPVKSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCV 238 (875)
Q Consensus 159 ~~~k~~VFGvpL~~ll~~~~~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G~~~~~~~~D~h~VAslL 238 (875)
.+.++.+||.||..+|.+.+ +|..+++++-+|...|.-++||||..++...++.|++.++.|..+..+...+|++|.++
T Consensus 76 ~~~~~~Lfg~pl~nic~~~~-lp~p~~d~l~~lc~kgp~t~giFr~~anek~~relKe~lnsgv~v~l~~~~i~v~a~v~ 154 (741)
T KOG4724|consen 76 NTADSFLFGWPLTNICVHFR-LPEPDEDFLLLLCCKGPCTRGIFRTIANEKNVRELKETLNSGVDVGLKSGEIVVDAAVD 154 (741)
T ss_pred CCCCccccCccchhhcccCC-CCChHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHhcccccccccccceEEeehhh
Confidence 45678899999999999877 99999999999999999999999999999999999999999987777888999999999
Q ss_pred hhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCCCCccchhhhc
Q 002837 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (875)
Q Consensus 239 K~fLReLPePLLp~~ly~~~i~~~~~~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~F 318 (875)
|.|||.+|..+|.+++|+.|+.+..+.+.+++|.+|++ +..+||..|..+|++|+..| .|..++..|.|+..|||+|+
T Consensus 155 kdflr~ip~~~lSsdl~~hw~~~~~~~~~e~~i~~i~r-~~d~Lpr~n~~lL~~l~~vl-~i~~~S~~n~m~~~nla~cv 232 (741)
T KOG4724|consen 155 KDFLRTIPQLTLSSDLNSHWQLQGPENVYEAIISEIER-QGDRLPRSNKQLLDTLPIVL-CILILSTINSMSGPNLAQCV 232 (741)
T ss_pred hchhhhchhhhhccccHHHHhhccccccHHHHHHHHHH-HHhhCCchHHHHHHHhHHHH-HHHHhhhhccccCccHHHHh
Confidence 99999999999999999999999999999999999999 66899999999999999999 99999999999999999999
Q ss_pred cccccCCCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCcccccccCCCCCCCCCCCCCCCCc
Q 002837 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESLHRCSISADSHVDNSGSEDSSD 398 (875)
Q Consensus 319 aP~LLrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~~~~~~~s~s~~ss~~~~~sedssd 398 (875)
+|+++++.+..+.+.+.+++ +++..+++|||+||-.||++++. .+..+++.++...|+.+|
T Consensus 233 ~p~~l~~~~~~s~e~~k~ln----------------~kv~~l~~flI~nclrifGe~i~---~~fr~~s~~s~~~e~~sd 293 (741)
T KOG4724|consen 233 NPIKLKVLTRTSSEFGKGLN----------------GKVPPLPIFLIVNCLRIFGEDIE---GIFRKSSKQSTFKELKSD 293 (741)
T ss_pred cchhcccccccChhhhcccc----------------CCCCCceeeehhhhHHhhccccc---ceeecccccccchhhhhh
Confidence 99999998766665555432 34567899999999999999995 455566667777888999
Q ss_pred ccccccCCCCCCCCCCCCCCCCCC
Q 002837 399 EENLDMKNNGYHDAQNEVDPESDD 422 (875)
Q Consensus 399 ~~~~~~~d~syds~e~e~~~~~d~ 422 (875)
-+..+. |+.||+.+++++.+.|.
T Consensus 294 ~s~~q~-Ds~yds~~~~~~~~~~~ 316 (741)
T KOG4724|consen 294 LSKGQV-DSHYDSTHVLASILKEY 316 (741)
T ss_pred hccccc-cccccccchhhhhhhhh
Confidence 888888 99999999998876654
No 51
>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms]
Probab=99.90 E-value=2e-24 Score=265.29 Aligned_cols=162 Identities=27% Similarity=0.439 Sum_probs=150.4
Q ss_pred ccccchHHHhh-hcCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcCC-CCCCCCCCcchhhhhhhhhh
Q 002837 165 VVGRPILLALE-DIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVL 242 (875)
Q Consensus 165 VFGvpL~~ll~-~~~~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G~-~~~~~~~D~h~VAslLK~fL 242 (875)
.||+.|..++. ....||.++.+|+.||+.+|+.+|||||++|...+++.|...|+.|. .+.....|+|+|++|||.||
T Consensus 602 ~fG~~l~~~~~~e~~~vP~i~~~c~~~ie~~~lr~eGiYRksG~~~~~e~l~~~~e~~~~~v~l~~~dih~vtsVlK~yL 681 (918)
T KOG1453|consen 602 LFGVSLSELARYEPSTVPFILKKCLREIEAHLLRVEGIYRKSGSMNQVENLSAVFENGDALVLLSTPDIHAVTSVLKLYL 681 (918)
T ss_pred cccHHHHHhhccCCCCCCHHHHHHHHHHHHhhhhccceeeccccHHHHHHHHHHhcCCccceecCCCChHHHHHHHHHHH
Confidence 99999999998 56789999999999999999999999999999999999999999986 55567899999999999999
Q ss_pred ccCCCCCCChhhHHHHHHHHhcCCHH------HHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCCCCccchhh
Q 002837 243 RELPSSPVPASCCTALLEAYKIDRKE------ARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAA 316 (875)
Q Consensus 243 ReLPePLLp~~ly~~~i~~~~~~~~e------eri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi 316 (875)
|+||+|||++..|+.|+.+.+..... +++..+.. ++..||+.|+.+|++|+.||.+|+.+++.|+|++.|||+
T Consensus 682 r~Lp~pIi~f~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~LP~~~~~vl~~li~Hl~RV~~~~~~NrM~~~nlai 760 (918)
T KOG1453|consen 682 RKLPEPIIIFNLYDEFLSAAKLPEKDEPSRSTEPLRKLKE-VLEQLPRAHYEVLRRLIAHLKRVARYEDVNRMTPKNLAI 760 (918)
T ss_pred HhccccccccchHHHHHhhhccccccccccccccchhHHH-HHHhcCHhHHHHHHHHHHHHHHHHHhhHhhcCCCCCccc
Confidence 99999999999999999999883333 48888988 567999999999999999999999999999999999999
Q ss_pred hccccccCCCC
Q 002837 317 CMAPLLLRPLL 327 (875)
Q Consensus 317 ~FaP~LLrp~~ 327 (875)
||||+|+|++.
T Consensus 761 vF~Ptllr~~d 771 (918)
T KOG1453|consen 761 VFAPTLLRPPD 771 (918)
T ss_pred cccCcccCCCC
Confidence 99999999984
No 52
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=99.90 E-value=6.7e-24 Score=191.67 Aligned_cols=87 Identities=61% Similarity=0.747 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC-CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 614 RRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQF-SSSRGMDSKTRAELEEIALAEADVARLKQKVAEL 692 (875)
Q Consensus 614 ~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~-~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l 692 (875)
+||.+.+++|.+|||||.+||+||++|+++|.|||+||++++|++ ++|++||+++++||+|||+||+||++||++|++|
T Consensus 1 ~rk~~~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~~L 80 (88)
T PF14389_consen 1 KRKQALHERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKVLSL 80 (88)
T ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999988 5889999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 002837 693 HHQLNQQR 700 (875)
Q Consensus 693 ~~~l~~~~ 700 (875)
|++|++||
T Consensus 81 ~~~l~~q~ 88 (88)
T PF14389_consen 81 YRQLFQQR 88 (88)
T ss_pred HHHHHhcC
Confidence 99999986
No 53
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=99.87 E-value=4.1e-22 Score=219.50 Aligned_cols=148 Identities=24% Similarity=0.367 Sum_probs=136.2
Q ss_pred CCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcCCC-CCCCCCCcchhhhhhhhhhccCCCCCCChhhHH
Q 002837 178 DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVIGDCVKHVLRELPSSPVPASCCT 256 (875)
Q Consensus 178 ~~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G~~-~~~~~~D~h~VAslLK~fLReLPePLLp~~ly~ 256 (875)
..||.+|..|+..|+.+|+..+||||++|....+++|++.|-+|+. ......|+|+||++||.|||+|.+||||+.+..
T Consensus 360 PMIPalVVHCVneIEaRGLteeGLYRvsg~~rtvk~lkekfLR~Kt~p~~g~~Dihvic~~lKdFLR~LkePLip~~~~r 439 (604)
T KOG3564|consen 360 PMIPALVVHCVNEIEARGLTEEGLYRVSGCDRTVKRLKEKFLRGKTTPHLGNDDIHVICCCLKDFLRNLKEPLIPFRLRR 439 (604)
T ss_pred ccchHHHHHHHHHHHHccccccceeeccccHHHHHHHHHHHhccCCCCccCCcchhHHHHHHHHHHHhcccccccchHHH
Confidence 4599999999999999999999999999999999999999999974 445678999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCCCCccchhhhccccccCCCC
Q 002837 257 ALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLL 327 (875)
Q Consensus 257 ~~i~~~~~~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~FaP~LLrp~~ 327 (875)
+|+++....+...-+.++-.++ ..||..|+.||.|||-|+++||+ +..|||+..|||.+|||+|+..+.
T Consensus 440 df~eAa~~tD~dn~~~aly~aV-~ELpQAnRDTLAfLmiH~qrIAQ-sp~~kM~v~nlA~ifgPtivgh~v 508 (604)
T KOG3564|consen 440 DFMEAAEITDEDNSILALYQAV-GELPQANRDTLAFLMIHWQRIAQ-SPRVKMNVANLARIFGPTIVGHAV 508 (604)
T ss_pred HHHHHhcCCCchhHHHHHHHHH-HhhhhcchhHHHHHHHHHHHHHh-CCcccccHHHHHHHhcchhhccCC
Confidence 9999999988877777777655 49999999999999999999887 679999999999999999998653
No 54
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]
Probab=99.73 E-value=3.7e-18 Score=199.88 Aligned_cols=161 Identities=22% Similarity=0.390 Sum_probs=147.6
Q ss_pred CCcccccchHHHhhhcCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcC-CCCCC-CCCCcchhhhhhh
Q 002837 162 KSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG-KTEFS-ADEDAHVIGDCVK 239 (875)
Q Consensus 162 k~~VFGvpL~~ll~~~~~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G-~~~~~-~~~D~h~VAslLK 239 (875)
....||.||..+......||.++.+|+.||+..|+.+|||||++|+......++.+|.+. +.++. -+..+|+||+.+|
T Consensus 914 ~s~~~~~~l~~~~t~~k~ip~~~ekc~sfiedtg~~te~lyrv~gnkT~~eelrkqf~n~~~~dl~s~d~~v~~vagAlk 993 (1100)
T KOG4271|consen 914 ESNYFLTPLQDAVTSEKPIPIFLEKCKSFIEDTGLSTEGLYRVSGNKTDLEELRKQFLNDHNFDLSSMDTTVNVVAGALK 993 (1100)
T ss_pred hhhccCCcccccccCCcccchHHHHHHHHHHhccchhhhheecCCCCccHHHHHHHHHhhccccccccccccccccCcch
Confidence 356899999888888889999999999999999999999999999999999999999874 33332 3467999999999
Q ss_pred hhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCCCCccchhhhcc
Q 002837 240 HVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMA 319 (875)
Q Consensus 240 ~fLReLPePLLp~~ly~~~i~~~~~~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~Fa 319 (875)
.||-.||+||+|+.+...|.+++.+.+...++..++. .+..||+.|+.+|+|++.||.+|+.....|.||..||.|||+
T Consensus 994 sffa~Lpeplipys~h~~~~e~~kI~D~~rklhglr~-~~a~l~~~n~dvfry~ithL~kvs~~~k~~l~t~~~~~i~~~ 1072 (1100)
T KOG4271|consen 994 SFFACLPEPLIPYSYHPRLKEAMKISDRGRKLHGLRE-ASAKLHPSNQDVFRYVITHLNKVSCSPKTNLMTNNNLSICFP 1072 (1100)
T ss_pred hhhhhCCCcccCccCCcchhhhhhcccchhhccchhh-HhhhcCchHHHHHHHHHHHHhhhccccccccccccccccccc
Confidence 9999999999999999999999999999999999998 457999999999999999999999999999999999999999
Q ss_pred cccc
Q 002837 320 PLLL 323 (875)
Q Consensus 320 P~LL 323 (875)
|.|+
T Consensus 1073 ~~~~ 1076 (1100)
T KOG4271|consen 1073 TLLM 1076 (1100)
T ss_pred chHH
Confidence 8776
No 55
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=99.71 E-value=3.5e-17 Score=173.38 Aligned_cols=164 Identities=21% Similarity=0.271 Sum_probs=138.5
Q ss_pred CcccccchHHHhhh-cCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcCCCCC--C--CCCCcchhhhh
Q 002837 163 SLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEF--S--ADEDAHVIGDC 237 (875)
Q Consensus 163 ~~VFGvpL~~ll~~-~~~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G~~~~--~--~~~D~h~VAsl 237 (875)
..|||.+|+.++.+ ...-|+++.+|+..|+++|++.-|+|+++|++..-+.|+..|+...-.+ . ..-|.++|+++
T Consensus 182 rgvfG~~L~~lV~RE~~~~PIvlrR~~~EiEkRGvD~~Gly~lCGS~~KKkmLR~~fe~n~r~~el~~E~iPD~nvItg~ 261 (442)
T KOG1452|consen 182 RGVFGISLSRLVQREPESPPIVLRRLYAEIEKRGVDYSGLYSLCGSVEKKKMLRRDFEPNGRDFELGAESIPDYNVITGD 261 (442)
T ss_pred ccccchhhHhHhhcCCCCCchHHHHHHHHHHhcccccccceeeechhhHHHHHHHHhccCCcccccccccCCCcceeecc
Confidence 45999999999986 4568999999999999999999999999999999999999998864222 2 22588999999
Q ss_pred hhhhhccCCCCCCChhhHHHHHHHHhc---CCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCCCCccch
Q 002837 238 VKHVLRELPSSPVPASCCTALLEAYKI---DRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAV 314 (875)
Q Consensus 238 LK~fLReLPePLLp~~ly~~~i~~~~~---~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NL 314 (875)
+|.||||||+|||+...|...+++... .+.+--...+-. |+.-||..++.+|-.++.||..|..++..|+|++..|
T Consensus 262 ~kD~lrElpEPl~t~~~f~m~~dA~sV~LP~dp~~N~kl~l~-iidcL~r~~~~~l~~~LDHLS~Vl~sS~~N~lt~~~L 340 (442)
T KOG1452|consen 262 SKDELRELPEPLVTGQDFEMDFDAASVALPFDPHLNLKLFLA-IIDCLERELSKQLNVCLDHLSTVLCSSPHNGLTPTRL 340 (442)
T ss_pred cHhHHHhCCCccccchhhhhhhhhhhhcCCCCccccHHHHHH-HHHHHHHHhhhhHhHHHhhhhHheecCCcCCcCHHHH
Confidence 999999999999999999887777432 122223334444 6679999999999999999999999999999999999
Q ss_pred hhhccccccCCCC
Q 002837 315 AACMAPLLLRPLL 327 (875)
Q Consensus 315 Ai~FaP~LLrp~~ 327 (875)
|.||||.||-...
T Consensus 341 s~i~~P~L~~~~~ 353 (442)
T KOG1452|consen 341 SLIFAPLLFFCLD 353 (442)
T ss_pred HHHhhhhHHHhhc
Confidence 9999999987653
No 56
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=99.64 E-value=1.3e-15 Score=140.94 Aligned_cols=91 Identities=21% Similarity=0.347 Sum_probs=70.4
Q ss_pred eEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeecc------CCceeEE
Q 002837 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE------DKKLLTV 92 (875)
Q Consensus 19 V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~------~Kk~~fi 92 (875)
|+|+|||+ |+|+..+.|++|||||+++.|+||+++.+.. +++.|+|..+ .+.... .+.++|.
T Consensus 2 v~k~G~L~--Kkg~~~k~WkkRwfvL~~~~L~yyk~~~~~~---------~~~~I~L~~~-~v~~~~~~~~~~~~~~~F~ 69 (100)
T cd01233 2 VSKKGYLN--FPEETNSGWTRRFVVVRRPYLHIYRSDKDPV---------ERGVINLSTA-RVEHSEDQAAMVKGPNTFA 69 (100)
T ss_pred cceeEEEE--eeCCCCCCcEEEEEEEECCEEEEEccCCCcc---------EeeEEEeccc-EEEEccchhhhcCCCcEEE
Confidence 78999776 6777789999999999999999999988764 4455666633 222111 2567887
Q ss_pred EEcCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 002837 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (875)
Q Consensus 93 It~~~~~gRty~LqAdTeeE~~eWv~AI~~al 124 (875)
|... .|+|+|+|+|++|+.+||.+|+...
T Consensus 70 I~t~---~rt~~~~A~s~~e~~~Wi~ai~~~~ 98 (100)
T cd01233 70 VCTK---HRGYLFQALSDKEMIDWLYALNPLY 98 (100)
T ss_pred EECC---CCEEEEEcCCHHHHHHHHHHhhhhh
Confidence 7543 4999999999999999999998764
No 57
>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins. This subgroup also contains two groups of closely related proteins, BRCC3 and DEPDC7, which both contain a C-terminal RhoGAP-like domain and an N-terminal DEP (Disheveled, Egl-10, and Pleckstrin) domain. The function(s) of BRCC3 and DEPDC7 are unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.63 E-value=1.7e-15 Score=157.70 Aligned_cols=185 Identities=16% Similarity=0.220 Sum_probs=143.1
Q ss_pred cccccchHHHh-hhcCCCcHHHHHHH--HHHHhcCCcc--cCccccCCCHHHHHHHHHHHhcCCCC--CCCC---CCcc-
Q 002837 164 LVVGRPILLAL-EDIDGGPSFLEKAL--RFLEKFGTKV--EGILRQAADVEEVDRRVQEYEQGKTE--FSAD---EDAH- 232 (875)
Q Consensus 164 ~VFGvpL~~ll-~~~~~VP~iL~~~i--~~Le~~Gl~~--EGIFRisG~~~~V~~L~~~ld~G~~~--~~~~---~D~h- 232 (875)
.+||+|+.+-+ ..+...|..+.... +++..+.++. -|+|++++-..-+...++.++.-... .... ++.+
T Consensus 20 ~l~glp~Ld~vl~~~~~~p~~i~~~~~~~~~~~~~ldr~vv~~~~ks~~~~Wl~aA~~CLe~~Pd~~~~~~~~~~y~~~~ 99 (235)
T cd04405 20 QLVGLPLLEELLDPALVNPKHISYNMDPDVYTSNYLDREVVKLFSKSQLDHWLLSAMDCLANWPDQLVVDVSRPLYSQHD 99 (235)
T ss_pred HHcCCccHHHHhcccCCCCcchhhcccccccccccccchhhcccccccCcHHHHHHHHHHHhCCcccccccccccccccc
Confidence 48999985544 44455677776555 5555554444 79999999888888888888764311 1111 2211
Q ss_pred -------hhhhhhhhhhccCCCCCCChhhHHHHHHHHh---cCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhc
Q 002837 233 -------VIGDCVKHVLRELPSSPVPASCCTALLEAYK---IDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISS 302 (875)
Q Consensus 233 -------~VAslLK~fLReLPePLLp~~ly~~~i~~~~---~~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~ 302 (875)
+|+.+++.||++||+||+|..+|+.|+.++. ....+.++++++-+++ .||++||..|+.|+.||+.|+.
T Consensus 100 ~~~~~e~dv~~ti~qyf~~LpEPLLT~~l~~~~~~I~~ll~~~~~e~aleAlQl~~l-LLP~enRe~Lq~LL~fl~~va~ 178 (235)
T cd04405 100 MLSGFKRLLFKTIAKYYGQLKEPLLTFHLFDIFVGILELLGNGKEEVALEALQLCLL-LLPPASRRELRRLLRFMARAAK 178 (235)
T ss_pred cccchHHHHHHHHHHHHhcCCCccCcchHHHHHHHHHHHhcCccHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999998888776 4458899999997555 9999999999999999999999
Q ss_pred Cc-------CCCCCCccchhhhccccccCCCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCc
Q 002837 303 HA-------HENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDE 375 (875)
Q Consensus 303 ~s-------~~NKMta~NLAi~FaP~LLrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~~ 375 (875)
+. ..|+| |++..|+|++++++. +. ......+|.|||+|+..||.-+
T Consensus 179 ~~~~~L~~~~~nR~---~v~~~Fs~~ii~~~~-----l~-------------------~~~~~~LV~Fmmd~~~~ifkvP 231 (235)
T cd04405 179 NDMPRLHKEIENRM---LVKQTFSRAILCSKD-----LD-------------------EGLADLLVLFLMDHHQDIFKVP 231 (235)
T ss_pred cCccccccccchHH---HHHHHhhhHhcCccc-----cC-------------------HHHHHHHHHHHHHcchhhhcCC
Confidence 94 25777 899999999999872 11 1235689999999999999865
Q ss_pred c
Q 002837 376 S 376 (875)
Q Consensus 376 ~ 376 (875)
.
T Consensus 232 ~ 232 (235)
T cd04405 232 G 232 (235)
T ss_pred c
Confidence 4
No 58
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=99.61 E-value=2.8e-15 Score=139.65 Aligned_cols=91 Identities=29% Similarity=0.457 Sum_probs=66.5
Q ss_pred EEeeeeeeccCCC-CCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcc---ee----e--ccCCcee
Q 002837 21 KSGPLFISSKGIG-WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGS---VV----V--REDKKLL 90 (875)
Q Consensus 21 KeG~L~l~KkG~~-~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~s---V~----~--~~~Kk~~ 90 (875)
|+|||. |+|+. .+.|++|||||+++.|+||+++.+..|+ |.|+|..+.. |. . .....++
T Consensus 1 KeG~L~--K~g~~~~k~wkkRwFvL~~~~L~Yyk~~~d~~~~---------G~I~L~~~~~~~~v~~~~~~~~~~~~~~~ 69 (103)
T cd01251 1 KEGFME--KTGPKHTEGFKKRWFTLDDRRLMYFKDPLDAFAK---------GEVFLGSQEDGYEVREGLPPGTQGNHWYG 69 (103)
T ss_pred CceeEE--ecCCCCCCCceeEEEEEeCCEEEEECCCCCcCcC---------cEEEeeccccceeEeccCCccccccccce
Confidence 689665 77765 6899999999999999999998876533 3344443221 11 0 1122336
Q ss_pred EEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002837 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (875)
Q Consensus 91 fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~ 125 (875)
|.|... +|+|+|+|+|++|+.+||.||+.++.
T Consensus 70 F~i~t~---~Rty~l~a~s~~e~~~Wi~ai~~v~~ 101 (103)
T cd01251 70 VTLVTP---ERKFLFACETEQDRREWIAAFQNVLS 101 (103)
T ss_pred EEEEeC---CeEEEEECCCHHHHHHHHHHHHHHhc
Confidence 766543 59999999999999999999999985
No 59
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.59 E-value=5.1e-15 Score=137.18 Aligned_cols=91 Identities=27% Similarity=0.402 Sum_probs=71.5
Q ss_pred EEeeeeeeccCC---CCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccC------CceeE
Q 002837 21 KSGPLFISSKGI---GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED------KKLLT 91 (875)
Q Consensus 21 KeG~L~l~KkG~---~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~------Kk~~f 91 (875)
.+| |+.|+|+ .+|+|++|||+|+++.|+|||+.....| ..+.|+|+.+..|....+ +.+||
T Consensus 2 ~~G--~l~k~~g~~r~~K~WkrRwF~L~~~~L~y~K~~~~~~~--------~~g~IdL~~~~sVk~~~~~~~~~~~~~~F 71 (101)
T cd01264 2 IEG--QLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKDDP--------DDCSIDLSKIRSVKAVAKKRRDRSLPKAF 71 (101)
T ss_pred cce--EEeecCccceeeecceeEEEEEeCCEEEEEeccCccCC--------CCceEEcccceEEeeccccccccccCcEE
Confidence 479 6667777 7999999999999999999998866532 125688888777654332 24788
Q ss_pred EEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 002837 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (875)
Q Consensus 92 iIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al 124 (875)
.|.... |+|||+|+|++++++||++|+.|+
T Consensus 72 ei~tp~---rt~~l~A~se~e~e~WI~~i~~a~ 101 (101)
T cd01264 72 EIFTAD---KTYILKAKDEKNAEEWLQCLNIAV 101 (101)
T ss_pred EEEcCC---ceEEEEeCCHHHHHHHHHHHHhhC
Confidence 876543 999999999999999999998774
No 60
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=99.56 E-value=1.7e-14 Score=131.94 Aligned_cols=93 Identities=26% Similarity=0.424 Sum_probs=67.6
Q ss_pred EEeeeeeecc-CC-CCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEEEEcCCC
Q 002837 21 KSGPLFISSK-GI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGR 98 (875)
Q Consensus 21 KeG~L~l~Kk-G~-~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiIt~~~~ 98 (875)
++|||+++.+ ++ ..+.|++|||||+++.|+||+++.+..+. ..|+|.++.+... ....++++|.|.. +
T Consensus 2 ~~GwL~kk~~~~g~~~k~WkkrwfvL~~~~L~yyk~~~~~~~~----~~I~L~~~~v~~~----~~~~k~~~F~I~~--~ 71 (96)
T cd01260 2 CDGWLWKRKKPGGFMGQKWARRWFVLKGTTLYWYRSKQDEKAE----GLIFLSGFTIESA----KEVKKKYAFKVCH--P 71 (96)
T ss_pred ceeEEEEecCCCCccccCceeEEEEEECCEEEEECCCCCCccc----eEEEccCCEEEEc----hhcCCceEEEECC--C
Confidence 6899986543 22 57799999999999999999999876422 2334444332211 1245677888763 3
Q ss_pred CCceEEEEeCCHHHHHHHHHHHHHH
Q 002837 99 DGRAFTLKAETSEDLYEWKTALELA 123 (875)
Q Consensus 99 ~gRty~LqAdTeeE~~eWv~AI~~a 123 (875)
+.++|+|+|+|++++++||.+|+.|
T Consensus 72 ~~~~~~f~a~s~~e~~~Wi~ai~~~ 96 (96)
T cd01260 72 VYKSFYFAAETLDDLSQWVNHLITA 96 (96)
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 4599999999999999999999864
No 61
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.56 E-value=1.8e-14 Score=132.30 Aligned_cols=90 Identities=22% Similarity=0.359 Sum_probs=66.4
Q ss_pred EeeeeeeccCCCCCCcEEEEEEEeC--CeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEEEEcCCCC
Q 002837 22 SGPLFISSKGIGWKSWKKRWFILTR--TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRD 99 (875)
Q Consensus 22 eG~L~l~KkG~~~ksWKKRWFVL~~--~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiIt~~~~~ 99 (875)
+|||++...++..+.|++|||||++ +.|+||+++.+.. ++|.|+|..+..+.....++++|.|...
T Consensus 2 ~GyL~K~g~~~~~K~WkkRWFvL~~~~~~L~Yyk~~~d~~---------p~G~I~L~~~~~~~~~~~~~~~F~i~t~--- 69 (95)
T cd01265 2 CGYLHKIEGKGPLRGRRSRWFALDDRTCYLYYYKDSQDAK---------PLGRVDLSGAAFTYDPREEKGRFEIHSN--- 69 (95)
T ss_pred cccEEEecCCCCCcCceeEEEEEcCCCcEEEEECCCCccc---------ccceEECCccEEEcCCCCCCCEEEEEcC---
Confidence 5977744332348999999999984 5899999988765 5566666664433223334566766543
Q ss_pred CceEEEEeCCHHHHHHHHHHHHHH
Q 002837 100 GRAFTLKAETSEDLYEWKTALELA 123 (875)
Q Consensus 100 gRty~LqAdTeeE~~eWv~AI~~a 123 (875)
+|+|+|+|+|++|+++||.||+.+
T Consensus 70 ~r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 70 NEVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhh
Confidence 599999999999999999999865
No 62
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=99.55 E-value=1.6e-14 Score=135.20 Aligned_cols=94 Identities=23% Similarity=0.262 Sum_probs=67.3
Q ss_pred EEEeeeeeeccC---CCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeec---c------CC
Q 002837 20 FKSGPLFISSKG---IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR---E------DK 87 (875)
Q Consensus 20 ~KeG~L~l~KkG---~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~---~------~K 87 (875)
+|+||||++.+| ..+++|++|||||+++.|+||+++.+.. .. +.|.|+|..+..+... . .+
T Consensus 1 ~k~g~l~Kr~~~~~~~~~~nwKkRwFvL~~~~L~Yyk~~~~~~--~~-----~kG~I~L~~~~~ve~~~~~~~~~~~~~~ 73 (106)
T cd01238 1 ILESILVKRSQQKKKTSPLNYKERLFVLTKSKLSYYEGDFEKR--GS-----KKGSIDLSKIKCVETVKPEKNPPIPERF 73 (106)
T ss_pred CcceeeeeeccCCCCCCCCCceeEEEEEcCCEEEEECCCcccc--cC-----cceeEECCcceEEEEecCCcCccccccc
Confidence 589988866433 2356999999999999999999887641 01 3445666654433211 1 24
Q ss_pred ceeEEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 002837 88 KLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELA 123 (875)
Q Consensus 88 k~~fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~a 123 (875)
+++|.|.+. .++|||+|+|++|+++||.||+.+
T Consensus 74 ~~~F~i~t~---~r~~yl~A~s~~er~~WI~ai~~~ 106 (106)
T cd01238 74 KYPFQVVHD---EGTLYVFAPTEELRKRWIKALKQV 106 (106)
T ss_pred CccEEEEeC---CCeEEEEcCCHHHHHHHHHHHHhC
Confidence 577877553 489999999999999999999864
No 63
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=99.52 E-value=4.4e-14 Score=129.79 Aligned_cols=90 Identities=27% Similarity=0.490 Sum_probs=65.9
Q ss_pred EEeeeeeeccCCCCCCcEEEEEEEeC--CeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeec---------cCCce
Q 002837 21 KSGPLFISSKGIGWKSWKKRWFILTR--TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR---------EDKKL 89 (875)
Q Consensus 21 KeG~L~l~KkG~~~ksWKKRWFVL~~--~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~---------~~Kk~ 89 (875)
.+|||+ |+|...+.|++|||||++ +.|+||+++.+..| .|.|+|..+..+... ..+.+
T Consensus 1 ~~G~L~--K~g~~~k~WkkRwFvL~~~~~~L~Yy~~~~~~~~---------~g~I~L~~~~~v~~~~~~~~~~~~~~~~~ 69 (101)
T cd01235 1 CEGYLY--KRGALLKGWKPRWFVLDPDKHQLRYYDDFEDTAE---------KGCIDLAEVKSVNLAQPGMGAPKHTSRKG 69 (101)
T ss_pred CeEEEE--EcCCCCCCccceEEEEECCCCEEEEecCCCCCcc---------ceEEEcceeEEEeecCCCCCCCCCCCCce
Confidence 379666 888889999999999994 49999999877653 334555544332211 12345
Q ss_pred eEEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 002837 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (875)
Q Consensus 90 ~fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al 124 (875)
+|.+.. .+|+|+|+|++++|+.+|+.||+.++
T Consensus 70 ~f~i~t---~~r~~~~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 70 FFDLKT---SKRTYNFLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred EEEEEe---CCceEEEECCCHHHHHHHHHHHHhhC
Confidence 666643 35999999999999999999999764
No 64
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.52 E-value=7.3e-14 Score=134.26 Aligned_cols=97 Identities=27% Similarity=0.516 Sum_probs=71.8
Q ss_pred EEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceee--ccCCceeEEEEcCC
Q 002837 20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV--REDKKLLTVLFPDG 97 (875)
Q Consensus 20 ~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~--~~~Kk~~fiIt~~~ 97 (875)
.|+|||+ |+|+..+.|++|||||+++.|+||+++.+.. +.+.|.|..+. |.. ...+++||.|....
T Consensus 1 ~k~G~L~--K~~~~~~~WkkRwfvL~~~~L~yyk~~~~~~---------~~g~I~L~~~~-v~~~~~~~~~~~F~i~~~~ 68 (125)
T cd01252 1 DREGWLL--KQGGRVKTWKRRWFILTDNCLYYFEYTTDKE---------PRGIIPLENVS-IREVEDPSKPFCFELFSPS 68 (125)
T ss_pred CcEEEEE--EeCCCCCCeEeEEEEEECCEEEEEcCCCCCC---------ceEEEECCCcE-EEEcccCCCCeeEEEECCc
Confidence 3789777 7777789999999999999999999887654 34445555422 222 23466778665432
Q ss_pred C------------------CCceEEEEeCCHHHHHHHHHHHHHHHhhCC
Q 002837 98 R------------------DGRAFTLKAETSEDLYEWKTALELALAQAP 128 (875)
Q Consensus 98 ~------------------~gRty~LqAdTeeE~~eWv~AI~~al~~aP 128 (875)
. ..++|+|+|+|.+|+.+|++||+.++...|
T Consensus 69 ~~~~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~~~~ 117 (125)
T cd01252 69 DKQQIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASISPNP 117 (125)
T ss_pred cccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhcCc
Confidence 2 236899999999999999999999986443
No 65
>cd04401 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal MSB1-like proteins. Msb1 was originally identified as a multicopy suppressor of temperature sensitive cdc42 mutation. Msb1 is a positive regulator of the Pkc1p-MAPK pathway and 1,3-beta-glucan synthesis, both pathways involve Rho1 regulation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.50 E-value=6.9e-14 Score=144.11 Aligned_cols=144 Identities=13% Similarity=0.152 Sum_probs=120.2
Q ss_pred cHHHHHHHHHHHhcCCcccCc---cccCCCHHHHHHHHH-HHhcCC--CCC-------CCCCCcchhhhhhhhhhccCCC
Q 002837 181 PSFLEKALRFLEKFGTKVEGI---LRQAADVEEVDRRVQ-EYEQGK--TEF-------SADEDAHVIGDCVKHVLRELPS 247 (875)
Q Consensus 181 P~iL~~~i~~Le~~Gl~~EGI---FRisG~~~~V~~L~~-~ld~G~--~~~-------~~~~D~h~VAslLK~fLReLPe 247 (875)
=.+|..|.+.|+.+|+++++| ||..++...++.++. .|+.+. ... ....|||+|+++||.||+.||+
T Consensus 7 ~~l~~~~t~eLk~rg~~t~~l~~pfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~e~~~~d~~~l~~~LK~~~~rLP~ 86 (198)
T cd04401 7 KGLIHNITEELKSRGLDTPLLFLPFRPELSPDKVRSLINSFFPSQNGQLQGTAELLDELRYADPHTLILVLKWIWSRLPG 86 (198)
T ss_pred HHHHHHHHHHHHhcccCcchhhcccCCCCCHHHHHHHHHHHCCCcCCcccchHHHHHHHhccChHHHHHHHHHHHHHCCC
Confidence 347889999999999999999 999999999998865 455442 111 1237999999999999999999
Q ss_pred CCCCh-hhHHHHHHHHhcCCHHHHHHHHHHHHHhhC--ChhHHHHHHHHHHHHHHHhcCcCCCCCCccchhhhccccccC
Q 002837 248 SPVPA-SCCTALLEAYKIDRKEARISAMRSAILETF--PEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLR 324 (875)
Q Consensus 248 PLLp~-~ly~~~i~~~~~~~~eeri~~l~~lLl~~L--P~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~FaP~LLr 324 (875)
++|+. +.|..|...-+..+ .-..+++.+| ..+ |+.|+.++..++.+|..|+.|+..|+|+..+|+.+|||.+|.
T Consensus 87 ~~v~~~~~Y~~F~~~E~~~~--~p~~aF~~~l-~~~~~~~a~~~il~~ffdlL~~Iaa~s~~N~ms~~kLs~~fg~waF~ 163 (198)
T cd04401 87 SKVIWWEVYEEFKARERRSN--YPADAFLDLL-PQCLSSPAHASILYDFFDLLSSIAAHSSVNGMSGRKLSKMAGPWAFG 163 (198)
T ss_pred CccCCHHHHHHHHHHHHhcC--CcHHHHHHHH-hhccCChhhHHHHHHHHHHHHHHHHhcCccCCcHhHHHHHhhHHHcC
Confidence 99999 99999998644332 2233777644 455 789999999999999999999999999999999999999999
Q ss_pred CCC
Q 002837 325 PLL 327 (875)
Q Consensus 325 p~~ 327 (875)
.+.
T Consensus 164 ~~~ 166 (198)
T cd04401 164 KPT 166 (198)
T ss_pred CCC
Confidence 874
No 66
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.50 E-value=6.7e-14 Score=130.63 Aligned_cols=90 Identities=30% Similarity=0.531 Sum_probs=66.3
Q ss_pred EEeeeeeeccC-------CCCCCcEEEEEEEe-CCeeeEecCCC-CCCCCCCceeeeeeCceEeCCCcceeecc---CCc
Q 002837 21 KSGPLFISSKG-------IGWKSWKKRWFILT-RTSLVFFKNDP-SALPQRGGEVNLTLGGIDLNNSGSVVVRE---DKK 88 (875)
Q Consensus 21 KeG~L~l~KkG-------~~~ksWKKRWFVL~-~~~L~YYKd~~-~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~---~Kk 88 (875)
++|||++..-| ..+|.|+||||||+ ++.|+||++.. +.. +.|.|+|+.+..|.... .+.
T Consensus 1 ~~g~l~~~~~~~~~~~~~~~~K~WkrRWFvL~~~~~L~y~~d~~~~~~---------p~G~IdL~~~~~V~~~~~~~~~~ 71 (104)
T cd01236 1 YCGWLLVAPDGTDFDNPVHRSKRWQRRWFILYDHGLLTYALDEMPTTL---------PQGTIDMNQCTDVVDAEARTGQK 71 (104)
T ss_pred CcceeEEcCCCCcccccceeeccccceEEEEeCCCEEEEeeCCCCCcc---------cceEEEccceEEEeecccccCCc
Confidence 47999876544 24899999999998 56788887663 443 45667887776654432 234
Q ss_pred eeEEEEcCCCCCceEEEEeCCHHHHHHHHHHHHH
Q 002837 89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALEL 122 (875)
Q Consensus 89 ~~fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~ 122 (875)
++|.|.+. .|+|||.|+|++|+++|+.+|..
T Consensus 72 ~~f~I~tp---~R~f~l~Aete~E~~~Wi~~l~~ 102 (104)
T cd01236 72 FSICILTP---DKEHFIKAETKEEISWWLNMLMV 102 (104)
T ss_pred cEEEEECC---CceEEEEeCCHHHHHHHHHHHHh
Confidence 67766543 49999999999999999999964
No 67
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=99.49 E-value=1.5e-13 Score=125.40 Aligned_cols=89 Identities=20% Similarity=0.305 Sum_probs=67.3
Q ss_pred EeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEEEEcCCCCCc
Q 002837 22 SGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGR 101 (875)
Q Consensus 22 eG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiIt~~~~~gR 101 (875)
+|||+ |+|...+.|++|||||+++.|.||+++.+..+ + +.|.|+|..+.-+ ..+.+++.|.|... .++
T Consensus 2 ~G~L~--K~~~~~k~Wk~RwFvL~~g~L~Yyk~~~~~~~--~-----~~G~I~L~~~~i~-~~~~~~~~F~i~~~--~~r 69 (91)
T cd01247 2 NGVLS--KWTNYINGWQDRYFVLKEGNLSYYKSEAEKSH--G-----CRGSIFLKKAIIA-AHEFDENRFDISVN--ENV 69 (91)
T ss_pred ceEEE--EeccccCCCceEEEEEECCEEEEEecCccCcC--C-----CcEEEECcccEEE-cCCCCCCEEEEEeC--CCe
Confidence 69555 88889999999999999999999999876531 1 3455666654322 22344567777532 359
Q ss_pred eEEEEeCCHHHHHHHHHHHHH
Q 002837 102 AFTLKAETSEDLYEWKTALEL 122 (875)
Q Consensus 102 ty~LqAdTeeE~~eWv~AI~~ 122 (875)
+|+|.|++++|+++||.||+.
T Consensus 70 ~~~L~A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 70 VWYLRAENSQSRLLWMDSVVR 90 (91)
T ss_pred EEEEEeCCHHHHHHHHHHHhh
Confidence 999999999999999999974
No 68
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=99.46 E-value=2.6e-13 Score=126.17 Aligned_cols=92 Identities=27% Similarity=0.379 Sum_probs=67.9
Q ss_pred ceEEEeeeeeeccCCCCCCcEEEEEEEeCC------eeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeec--cCCce
Q 002837 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRT------SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR--EDKKL 89 (875)
Q Consensus 18 ~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~------~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~--~~Kk~ 89 (875)
.|+|+|||. |+ +.|+||||||++. .|.||++++.....+ ..+.+.|+|..|..|... ..+++
T Consensus 1 ~v~k~GyL~--K~----K~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~----~~p~~vI~L~~c~~v~~~~d~k~~~ 70 (101)
T cd01257 1 DVRKSGYLR--KQ----KSMHKRFFVLRAESSGGPARLEYYENEKKFLQKG----SAPKRVIPLESCFNINKRADAKHRH 70 (101)
T ss_pred CccEEEEEe--Ee----cCcEeEEEEEecCCCCCCceEEEECChhhccccC----CCceEEEEccceEEEeeccccccCe
Confidence 478999776 43 7899999999988 699999987532110 115667788777766443 23346
Q ss_pred eEEEEcCCCCCceEEEEeCCHHHHHHHHHHHHH
Q 002837 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALEL 122 (875)
Q Consensus 90 ~fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~ 122 (875)
+|.|... .++|+|.|+|++|+++|+.+|..
T Consensus 71 ~f~i~t~---dr~f~l~aese~E~~~Wi~~i~~ 100 (101)
T cd01257 71 LIALYTR---DEYFAVAAENEAEQDSWYQALLE 100 (101)
T ss_pred EEEEEeC---CceEEEEeCCHHHHHHHHHHHhh
Confidence 7776543 38999999999999999999964
No 69
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.45 E-value=4.3e-13 Score=124.79 Aligned_cols=97 Identities=22% Similarity=0.317 Sum_probs=68.3
Q ss_pred eEEEeeeeeeccCCCCCCcEEEEEEEe-CCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEEEEcCC
Q 002837 19 VFKSGPLFISSKGIGWKSWKKRWFILT-RTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDG 97 (875)
Q Consensus 19 V~KeG~L~l~KkG~~~ksWKKRWFVL~-~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiIt~~~ 97 (875)
|+|+|||. |+|...+.|++|||+|+ ++.|+||++.+..... ..++++++.+..+..+.....+.++|.|...+
T Consensus 1 v~k~G~L~--K~g~~~~~Wk~R~f~L~~~~~l~~yk~~~~~~~~----~~i~l~~~~v~~~~~~~~~~~~~~~F~i~~~~ 74 (102)
T cd01241 1 VVKEGWLH--KRGEYIKTWRPRYFLLKSDGSFIGYKEKPEDGDP----FLPPLNNFSVAECQLMKTERPRPNTFIIRCLQ 74 (102)
T ss_pred CcEEEEEE--eecCCCCCCeeEEEEEeCCCeEEEEecCCCccCc----cccccCCeEEeeeeeeeccCCCcceEEEEecc
Confidence 57999665 78888999999999999 7889988887643221 24466777666543322334555677775211
Q ss_pred ---CCCceEEEEeCCHHHHHHHHHHHHHH
Q 002837 98 ---RDGRAFTLKAETSEDLYEWKTALELA 123 (875)
Q Consensus 98 ---~~gRty~LqAdTeeE~~eWv~AI~~a 123 (875)
...| +|+|+|++|+++||.||+.+
T Consensus 75 ~~~~~~r--~f~a~s~ee~~eWi~ai~~v 101 (102)
T cd01241 75 WTTVIER--TFHVESPEEREEWIHAIQTV 101 (102)
T ss_pred CCcccCE--EEEeCCHHHHHHHHHHHHhh
Confidence 1234 44699999999999999876
No 70
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=99.41 E-value=9.7e-13 Score=123.48 Aligned_cols=88 Identities=19% Similarity=0.145 Sum_probs=62.0
Q ss_pred EeeeeeeccCC----CCCCcEEEEEEEeCCe-------eeEecCCCCCCCCCCceeeeeeCceEeCCCcceee-----cc
Q 002837 22 SGPLFISSKGI----GWKSWKKRWFILTRTS-------LVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-----RE 85 (875)
Q Consensus 22 eG~L~l~KkG~----~~ksWKKRWFVL~~~~-------L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~-----~~ 85 (875)
+|||. |+|. ..+.|++|||||+++. |+||+++.+.. +.|.|+|..+..+.. ..
T Consensus 2 eGwL~--K~~~~~~~~~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~~k---------~~g~I~L~~~~~v~~~~~~~~~ 70 (108)
T cd01266 2 EGWLK--KSPPYKLLFRTKWVRRYFVLHCGDRERNLFALEYYKTSRKFK---------LEFVIDLESCSQVDPGLLCTAG 70 (108)
T ss_pred ceeee--eCCccccccccCcEEEEEEEeccccCCCcceEEEECCCCCCc---------cceEEECCccEEEccccccccc
Confidence 79776 5554 3569999999999876 59999987665 344555555433211 11
Q ss_pred --CCceeEEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 002837 86 --DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELA 123 (875)
Q Consensus 86 --~Kk~~fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~a 123 (875)
...+.|.+.. ..|+|+|.|+|++||++||.+|+++
T Consensus 71 ~~~~~~~f~i~t---~~r~y~l~A~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 71 NCIFGYGFDIET---IVRDLYLVAKNEEEMTLWVNCICKL 107 (108)
T ss_pred CcccceEEEEEe---CCccEEEEECCHHHHHHHHHHHHhh
Confidence 2234565543 3499999999999999999999865
No 71
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.41 E-value=1.1e-12 Score=117.31 Aligned_cols=91 Identities=27% Similarity=0.422 Sum_probs=65.4
Q ss_pred EEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEEEEcCCCCC
Q 002837 21 KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDG 100 (875)
Q Consensus 21 KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiIt~~~~~g 100 (875)
++|||+ |++...+.|++|||||+++.|+||+++.... . .+.+.|.|..+. +.....+.++|.|.. .++
T Consensus 1 ~~G~L~--k~~~~~~~W~~r~~vl~~~~L~~~~~~~~~~--~-----~~~~~i~l~~~~-~~~~~~~~~~F~i~~--~~~ 68 (91)
T cd01246 1 VEGWLL--KWTNYLKGWQKRWFVLDNGLLSYYKNKSSMR--G-----KPRGTILLSGAV-ISEDDSDDKCFTIDT--GGD 68 (91)
T ss_pred CeEEEE--EecccCCCceeeEEEEECCEEEEEecCccCC--C-----CceEEEEeceEE-EEECCCCCcEEEEEc--CCC
Confidence 479776 5555668999999999999999999987651 0 123334444432 222233456777753 346
Q ss_pred ceEEEEeCCHHHHHHHHHHHHHH
Q 002837 101 RAFTLKAETSEDLYEWKTALELA 123 (875)
Q Consensus 101 Rty~LqAdTeeE~~eWv~AI~~a 123 (875)
++|+|+|+|.+|+.+|+.||+.|
T Consensus 69 ~~~~~~a~s~~e~~~Wi~al~~a 91 (91)
T cd01246 69 KTLHLRANSEEERQRWVDALELA 91 (91)
T ss_pred CEEEEECCCHHHHHHHHHHHHhC
Confidence 99999999999999999999864
No 72
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.38 E-value=1.5e-12 Score=117.17 Aligned_cols=93 Identities=22% Similarity=0.451 Sum_probs=63.6
Q ss_pred EEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEEEEcCCCCC
Q 002837 21 KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDG 100 (875)
Q Consensus 21 KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiIt~~~~~g 100 (875)
|+|||+++.. ...+.|++|||||+++.|+||+++.... ......+.+..+.+..... ...++++|.|....
T Consensus 1 k~G~L~kk~~-~~~~~W~kr~~~L~~~~l~~y~~~~~~~--~~~~~~i~l~~~~v~~~~~---~~~~~~~f~i~~~~--- 71 (94)
T cd01250 1 KQGYLYKRSS-KSNKEWKKRWFVLKNGQLTYHHRLKDYD--NAHVKEIDLRRCTVRHNGK---QPDRRFCFEVISPT--- 71 (94)
T ss_pred CcceEEEECC-CcCCCceEEEEEEeCCeEEEEcCCcccc--cccceEEeccceEEecCcc---ccCCceEEEEEcCC---
Confidence 5898874332 2267899999999999999999987631 1111223444333322111 11267788776433
Q ss_pred ceEEEEeCCHHHHHHHHHHHHH
Q 002837 101 RAFTLKAETSEDLYEWKTALEL 122 (875)
Q Consensus 101 Rty~LqAdTeeE~~eWv~AI~~ 122 (875)
++|+|+|+|.+++.+|+.||+.
T Consensus 72 ~~~~f~a~s~~~~~~Wi~al~~ 93 (94)
T cd01250 72 KTWHFQADSEEERDDWISAIQE 93 (94)
T ss_pred cEEEEECCCHHHHHHHHHHHhc
Confidence 8999999999999999999975
No 73
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.35 E-value=3.1e-12 Score=118.34 Aligned_cols=77 Identities=22% Similarity=0.240 Sum_probs=58.0
Q ss_pred CCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeecc----CCceeEEEEcCCCCCceEEEEeCC
Q 002837 34 WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE----DKKLLTVLFPDGRDGRAFTLKAET 109 (875)
Q Consensus 34 ~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~----~Kk~~fiIt~~~~~gRty~LqAdT 109 (875)
.++||+|||+|++..|+||+++... +.|.|+|..+..|..-. ...++|.|... .++|||+|+|
T Consensus 18 ~~n~KkRwF~Lt~~~L~Y~k~~~~~----------~~g~I~L~~i~~ve~v~~~~~~~~~~fqivt~---~r~~yi~a~s 84 (98)
T cd01244 18 VLHFKKRYFQLTTTHLSWAKDVQCK----------KSALIKLAAIKGTEPLSDKSFVNVDIITIVCE---DDTMQLQFEA 84 (98)
T ss_pred CcCCceeEEEECCCEEEEECCCCCc----------eeeeEEccceEEEEEcCCcccCCCceEEEEeC---CCeEEEECCC
Confidence 4789999999999999999987643 56667777765543222 22345655332 3899999999
Q ss_pred HHHHHHHHHHHHHH
Q 002837 110 SEDLYEWKTALELA 123 (875)
Q Consensus 110 eeE~~eWv~AI~~a 123 (875)
+.|+++||.||+++
T Consensus 85 ~~E~~~Wi~al~k~ 98 (98)
T cd01244 85 PVEATDWLNALEKQ 98 (98)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999864
No 74
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=99.33 E-value=1.3e-11 Score=110.85 Aligned_cols=101 Identities=23% Similarity=0.402 Sum_probs=72.9
Q ss_pred eEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCccee--eccCCceeEEEEcC
Q 002837 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV--VREDKKLLTVLFPD 96 (875)
Q Consensus 19 V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~--~~~~Kk~~fiIt~~ 96 (875)
++++|||++.. ...+.|++|||||+++.|+||++..... ...+...+.+.++.+....... ......++|.|...
T Consensus 1 ~~~~G~L~~~~--~~~~~wk~r~~vL~~~~L~~~~~~~~~~-~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~~~f~i~~~ 77 (104)
T PF00169_consen 1 CIKEGWLLKKS--SSRKKWKKRYFVLRDSYLLYYKSSKDKS-DSKPKGSIPLDDCTVRPDPSSDFLSNKKRKNCFEITTP 77 (104)
T ss_dssp EEEEEEEEEEE--SSSSSEEEEEEEEETTEEEEESSTTTTT-ESSESEEEEGTTEEEEEETSSTSTSTSSSSSEEEEEET
T ss_pred CEEEEEEEEEC--CCCCCeEEEEEEEECCEEEEEecCcccc-ceeeeEEEEecCceEEEcCccccccccCCCcEEEEEeC
Confidence 68999888544 5678899999999999999999988411 1223344556555554432210 12356678877654
Q ss_pred CCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 002837 97 GRDGRAFTLKAETSEDLYEWKTALELAL 124 (875)
Q Consensus 97 ~~~gRty~LqAdTeeE~~eWv~AI~~al 124 (875)
. +..|+|+|+|++++..|+.+|+.++
T Consensus 78 ~--~~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 78 N--GKSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp T--SEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred C--CcEEEEEcCCHHHHHHHHHHHHHHh
Confidence 3 4799999999999999999999986
No 75
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.31 E-value=5.4e-12 Score=116.63 Aligned_cols=88 Identities=17% Similarity=0.249 Sum_probs=65.9
Q ss_pred EEeeeeeeccCCC-CCCcEEEEEEEeC----CeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceee-c---cCCceeE
Q 002837 21 KSGPLFISSKGIG-WKSWKKRWFILTR----TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-R---EDKKLLT 91 (875)
Q Consensus 21 KeG~L~l~KkG~~-~ksWKKRWFVL~~----~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~-~---~~Kk~~f 91 (875)
+.|||. |+|+. .|.||+|||+|.+ +.|+||++..++. +++-|++..+ .|.. . ..+++||
T Consensus 1 ~~G~l~--K~g~~~~K~wK~rwF~l~~~~s~~~l~yf~~~~~~~---------p~gli~l~~~-~V~~v~ds~~~r~~cF 68 (98)
T cd01245 1 KKGNLL--KRTKSVTKLWKTLYFALILDGSRSHESLLSSPKKTK---------PIGLIDLSDA-YLYPVHDSLFGRPNCF 68 (98)
T ss_pred CCCccc--cCCCCcccccceeEEEEecCCCCceEEEEcCCCCCC---------ccceeecccc-EEEEccccccCCCeEE
Confidence 358665 77776 9999999999987 8999999998876 4444555554 3222 1 2567899
Q ss_pred EEEcCCCCCceEEEEeCCHHHHHHHHHHHHH
Q 002837 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALEL 122 (875)
Q Consensus 92 iIt~~~~~gRty~LqAdTeeE~~eWv~AI~~ 122 (875)
.+.... .+.+|+++|++ +|+++||.+|+.
T Consensus 69 el~~~~-~~~~y~~~a~~-~er~~Wi~~l~~ 97 (98)
T cd01245 69 QIVERA-LPTVYYSCRSS-EERDKWIESLQA 97 (98)
T ss_pred EEecCC-CCeEEEEeCCH-HHHHHHHHHHhc
Confidence 886432 12689999999 999999999975
No 76
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.30 E-value=7.6e-12 Score=119.96 Aligned_cols=98 Identities=23% Similarity=0.313 Sum_probs=66.8
Q ss_pred EEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceee------ccCCceeEEE
Q 002837 20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV------REDKKLLTVL 93 (875)
Q Consensus 20 ~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~------~~~Kk~~fiI 93 (875)
.-.|||.+....++.++|++|||||+|+.|+||+.+.+.. ... +++.|+|..+..... .-.+++.|.|
T Consensus 2 ~~~GfL~~~q~~~~~k~W~RRWFvL~g~~L~y~k~p~d~~-~~~-----Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i 75 (122)
T cd01263 2 EYHGFLTMFEDTSGFGAWHRRWCALEGGEIKYWKYPDDEK-RKG-----PTGLIDLSTCTSSEGASAVRDICARPNTFHL 75 (122)
T ss_pred ccceeEEEEeccCCCCCceEEEEEEeCCEEEEEcCCCccc-cCC-----ceEEEEhhhCcccccccCChhhcCCCCeEEE
Confidence 3469998866666799999999999999999999877632 112 455555555444222 2345556665
Q ss_pred EcCCCC--------------C--c-eEEEEeCCHHHHHHHHHHHHHH
Q 002837 94 FPDGRD--------------G--R-AFTLKAETSEDLYEWKTALELA 123 (875)
Q Consensus 94 t~~~~~--------------g--R-ty~LqAdTeeE~~eWv~AI~~a 123 (875)
...... . + -|+|.|+|.+|+++|+.||+++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~~ 122 (122)
T cd01263 76 DVWRPKMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNST 122 (122)
T ss_pred EEecccccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhcC
Confidence 321111 1 1 2789999999999999999753
No 77
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.27 E-value=2.6e-11 Score=112.49 Aligned_cols=96 Identities=27% Similarity=0.374 Sum_probs=62.9
Q ss_pred Eeeeeeec------cCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEEEEc
Q 002837 22 SGPLFISS------KGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFP 95 (875)
Q Consensus 22 eG~L~l~K------kG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiIt~ 95 (875)
+|+|..+. +....+.|++|||||+++.|+||+++........+...|.+.++.+..+. ....++++|.|..
T Consensus 2 ~g~l~rk~~~~~~g~~~~~~~Wk~r~~vL~~~~L~~ykd~~~~~~~~~~~~~i~l~~~~i~~~~---~~~k~~~~F~l~~ 78 (104)
T cd01253 2 EGSLERKHELESGGKKASNRSWDNVYGVLCGQSLSFYKDEKMAAENVHGEPPVDLTGAQCEVAS---DYTKKKHVFRLRL 78 (104)
T ss_pred CceEeEEEEeecCCcccCCCCcceEEEEEeCCEEEEEecCcccccCCCCCCcEeccCCEEEecC---CcccCceEEEEEe
Confidence 57666331 22347789999999999999999987654222222222333222221111 0124567787763
Q ss_pred CCCCCceEEEEeCCHHHHHHHHHHHHH
Q 002837 96 DGRDGRAFTLKAETSEDLYEWKTALEL 122 (875)
Q Consensus 96 ~~~~gRty~LqAdTeeE~~eWv~AI~~ 122 (875)
++|+.|+|+|+++++|.+|+.+|+.
T Consensus 79 --~~~~~~~f~a~s~e~~~~Wi~aL~~ 103 (104)
T cd01253 79 --PDGAEFLFQAPDEEEMSSWVRALKS 103 (104)
T ss_pred --cCCCEEEEECCCHHHHHHHHHHHhc
Confidence 4679999999999999999999975
No 78
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=2.5e-11 Score=127.68 Aligned_cols=102 Identities=27% Similarity=0.496 Sum_probs=76.4
Q ss_pred eEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEEEEcCC-
Q 002837 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDG- 97 (875)
Q Consensus 19 V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiIt~~~- 97 (875)
..++|||++. .|...++||+|||+|+.++||||.--.+..|.+ .|+|....+..+. ...|++||.+....
T Consensus 260 pdREGWLlKl-gg~rvktWKrRWFiLtdNCLYYFe~tTDKEPrG----IIpLeNlsir~Ve----dP~kP~cfEly~ps~ 330 (395)
T KOG0930|consen 260 PDREGWLLKL-GGNRVKTWKRRWFILTDNCLYYFEYTTDKEPRG----IIPLENLSIREVE----DPKKPNCFELYIPSN 330 (395)
T ss_pred ccccceeeee-cCCcccchhheeEEeecceeeeeeeccCCCCCc----ceeccccceeecc----CCCCCCeEEEecCCC
Confidence 4689988844 233689999999999999999999888876544 3455555554433 35778899875422
Q ss_pred -----------CCCc-------eEEEEeCCHHHHHHHHHHHHHHHhhCCc
Q 002837 98 -----------RDGR-------AFTLKAETSEDLYEWKTALELALAQAPS 129 (875)
Q Consensus 98 -----------~~gR-------ty~LqAdTeeE~~eWv~AI~~al~~aP~ 129 (875)
.+|| .|-++|.+.+|+.+||.+|+.++.+.|-
T Consensus 331 ~gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is~~Pf 380 (395)
T KOG0930|consen 331 KGQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAISRDPF 380 (395)
T ss_pred CcCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhccCcH
Confidence 1333 6999999999999999999999976554
No 79
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.14 E-value=2.3e-10 Score=109.20 Aligned_cols=102 Identities=21% Similarity=0.260 Sum_probs=68.4
Q ss_pred EEEeeeeeec----cCC----CCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcc-ee-eccCCce
Q 002837 20 FKSGPLFISS----KGI----GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGS-VV-VREDKKL 89 (875)
Q Consensus 20 ~KeG~L~l~K----kG~----~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~s-V~-~~~~Kk~ 89 (875)
.|+|+|..+- .|. +.+.|+++||||+++.|++||++....... .. .-.-..|.|..+.. +. ...++++
T Consensus 1 ~~~g~l~RK~~~~~~~kk~~~~~R~Wk~~y~vL~g~~L~~yKDe~~~~~~~-~~-~~~~~~Isi~~a~~~ia~dy~Kr~~ 78 (117)
T cd01230 1 YKHGALMRKVHADPDCRKTPFGKRSWKMFYGILRGLVLYLQKDEHKPGKSL-SE-TELKNAISIHHALATRASDYSKKPH 78 (117)
T ss_pred CCCcEEEEEEEecCCCccCCCCCCcceEEEEEEECCEEEEEccCccccccc-cc-ccccceEEeccceeEeeccccCCCc
Confidence 3789887441 111 257899999999999999999997532110 00 00012244544432 21 2345666
Q ss_pred eEEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002837 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (875)
Q Consensus 90 ~fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~ 125 (875)
.|.|.. .+|+.|+|||.+.+||+.||.+|+.+.+
T Consensus 79 VF~L~~--~~g~~~lfqA~~~ee~~~Wi~~I~~~~~ 112 (117)
T cd01230 79 VFRLRT--ADWREFLFQTSSLKELQSWIERINVVAA 112 (117)
T ss_pred EEEEEc--CCCCEEEEECCCHHHHHHHHHHHHHHHH
Confidence 777764 5689999999999999999999999875
No 80
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.14 E-value=2.1e-10 Score=106.85 Aligned_cols=92 Identities=22% Similarity=0.392 Sum_probs=71.0
Q ss_pred eccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEEE-EcCCCCCceEEEE
Q 002837 28 SSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVL-FPDGRDGRAFTLK 106 (875)
Q Consensus 28 ~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiI-t~~~~~gRty~Lq 106 (875)
+-+...++.||+|||+|+++.|+|||++.+.. +.+.+.+.+.+|.+.....| ..+++++.+ +|.....++|+|.
T Consensus 11 ~~~~~~~K~~KrrwF~lk~~~L~YyK~kee~~--~~p~i~lnl~gcev~~dv~~---~~~kf~I~l~~ps~~~~r~y~l~ 85 (106)
T cd01237 11 KPKKLTLKGYKQYWFTFRDTSISYYKSKEDSN--GAPIGQLNLKGCEVTPDVNV---AQQKFHIKLLIPTAEGMNEVWLR 85 (106)
T ss_pred CcchhhhhhheeEEEEEeCCEEEEEccchhcC--CCCeEEEecCceEEcccccc---cccceEEEEecCCccCCeEEEEE
Confidence 34455688899999999999999999987753 45566778888888775443 244566655 4444455899999
Q ss_pred eCCHHHHHHHHHHHHHHH
Q 002837 107 AETSEDLYEWKTALELAL 124 (875)
Q Consensus 107 AdTeeE~~eWv~AI~~al 124 (875)
|+|++++.+||+|++.|.
T Consensus 86 cdsEeqya~Wmaa~rlas 103 (106)
T cd01237 86 CDNEKQYAKWMAACRLAS 103 (106)
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 999999999999999875
No 81
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=99.14 E-value=5.4e-11 Score=131.04 Aligned_cols=172 Identities=17% Similarity=0.224 Sum_probs=142.4
Q ss_pred CCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcCC------------------------------------
Q 002837 179 GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK------------------------------------ 222 (875)
Q Consensus 179 ~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G~------------------------------------ 222 (875)
..|.++...+.+.+.+|..++||+|.++...+.++++..-..|+
T Consensus 70 ~~~~~f~~~~~~~e~~~~fte~~s~~~~eksr~~e~k~k~kk~~k~~~aD~~~~~~~~k~~~~~i~Epvvpi~~p~V~r~ 149 (514)
T KOG4370|consen 70 PLPSFFRYAIDFVEENGLFTEGISRLSPEKSRLDELKRKAKKGEKMIFADAHDAAGLIKRFLRQIPEPVVPIEFPSVARS 149 (514)
T ss_pred cCcccchhhhhhhhccccccccccccCcccchhHHHHHhhhhhhhhhHHHHHHHHhHHHHhhhccCCccccccchHHHHH
Confidence 46889999999999999999999999988766555544332211
Q ss_pred -----CCCCCCCCcchhhhhhhhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHH
Q 002837 223 -----TEFSADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMM 297 (875)
Q Consensus 223 -----~~~~~~~D~h~VAslLK~fLReLPePLLp~~ly~~~i~~~~~~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L 297 (875)
.....++.|.+||+|+|.|||+||++|++.++...|..++...........++. ++..||.+||.++.||+-|+
T Consensus 150 Ci~e~~~~~~~l~p~tvcSllk~~lr~lpenlLT~el~~rFeev~~h~~~t~~q~efq~-llk~Lp~cNyll~swl~lH~ 228 (514)
T KOG4370|consen 150 CIREGLATTTQLTPKTVCSLLKSRLRRLPENLLTVELKTRFEEVFLHAQHTMGQNEFQF-LLKILPKCNYLLYSWLNLHK 228 (514)
T ss_pred HhhccccchhhcCchhHHHHHHHHHhhcchhhHHHHHHHHHHHHHccchhhHHHHHHHH-HHHhccccchHHHHHHHHHH
Confidence 000134678999999999999999999999999999999988888888888887 56899999999999999999
Q ss_pred HHHhcCcCCCCCCccchhhhccccccCCCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCccc
Q 002837 298 HTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESL 377 (875)
Q Consensus 298 ~~Va~~s~~NKMta~NLAi~FaP~LLrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~~~~ 377 (875)
-.|....-.|||++.||+|+..|++--+ ..++..|.-|+..||++.-+
T Consensus 229 d~vi~~e~~~Kln~q~i~i~lspt~q~s--------------------------------~r~l~al~~h~q~lf~~v~l 276 (514)
T KOG4370|consen 229 DKVIEEEYCLKLNKQQIFINLSPTEQES--------------------------------KRGLQALGLHLQTLFEMVRL 276 (514)
T ss_pred HHHHHHHHHhhcchhheeeecchHHHHH--------------------------------HHHHHHHHHHHHHHHhhhee
Confidence 9999999999999999999988876532 34577888899999999887
Q ss_pred ccccCC
Q 002837 378 HRCSIS 383 (875)
Q Consensus 378 ~~~s~s 383 (875)
..|..+
T Consensus 277 ~~~~~p 282 (514)
T KOG4370|consen 277 MVCFSP 282 (514)
T ss_pred eeeecc
Confidence 666444
No 82
>KOG3565 consensus Cdc42-interacting protein CIP4 [Cytoskeleton]
Probab=99.09 E-value=1.3e-10 Score=137.90 Aligned_cols=146 Identities=22% Similarity=0.302 Sum_probs=129.8
Q ss_pred CCcHHHHHHHHHHHhcCCcccCccc-cCCCHHHHHHHHHHHhcCCCCC--CCCCCcchhhhhhhhhhccCCCC-CCChhh
Q 002837 179 GGPSFLEKALRFLEKFGTKVEGILR-QAADVEEVDRRVQEYEQGKTEF--SADEDAHVIGDCVKHVLRELPSS-PVPASC 254 (875)
Q Consensus 179 ~VP~iL~~~i~~Le~~Gl~~EGIFR-isG~~~~V~~L~~~ld~G~~~~--~~~~D~h~VAslLK~fLReLPeP-LLp~~l 254 (875)
.||.++..|+.+++.+|+..+|||| +++....|...+.++.+|.... ..+.+... |.++|.|+|.|.+| +|+++.
T Consensus 217 ~iP~i~d~~~~l~~~~~l~~~~i~~k~s~~e~~v~~~~~k~~~g~~~~~~~~~~~~dS-a~vlk~~~~~le~P~~f~~e~ 295 (640)
T KOG3565|consen 217 FIPLIVDSLQRLEERRGLRLEGILRKVSGSESSVNDIISKCERGMRLAVGLNDPDLDS-AGVLKLYFRGLEEPADFPFED 295 (640)
T ss_pred cccHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhccCcchhH-HHHHHHHHccCCCcccCcccc
Confidence 4999999999999999999999999 8899999999999999984222 23344555 99999999999999 999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCCCCccchhhhccccccCCC
Q 002837 255 CTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPL 326 (875)
Q Consensus 255 y~~~i~~~~~~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~FaP~LLrp~ 326 (875)
|..++.+....+.-+++..++.++ ..+|..+..++.+|+.|+...+..++.|.|++.|+|+||||.++-.+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~L-~~~~~~~~~~~~~l~~f~~~l~~~~~~~~~~~~n~~~~~g~~~~~~~ 366 (640)
T KOG3565|consen 296 FGQPHDCAARDNLLSRALHVRKLL-KSLPNQVGIELRKLFAFLSKLSQLSDENMMDPYNLAICFGPTLEPVP 366 (640)
T ss_pred ccchhhhhhhcCchhhhhhhhhhh-hccccHHHHHHHHHHHhhhhhhhhccccccCccccccccccccccCc
Confidence 999999988877777778888754 59999999999999999999999999999999999999999997654
No 83
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=99.08 E-value=4.6e-10 Score=106.37 Aligned_cols=97 Identities=32% Similarity=0.518 Sum_probs=49.0
Q ss_pred EEeeeeeeccCCC-CCCcEEEEEEEe-CCeeeEecCCCCCCCCC--C--ceeeeeeCceEeCC----Cc-----ceeecc
Q 002837 21 KSGPLFISSKGIG-WKSWKKRWFILT-RTSLVFFKNDPSALPQR--G--GEVNLTLGGIDLNN----SG-----SVVVRE 85 (875)
Q Consensus 21 KeG~L~l~KkG~~-~ksWKKRWFVL~-~~~L~YYKd~~~~~p~~--~--~e~~i~Lg~I~L~~----~~-----sV~~~~ 85 (875)
|+|||+ |++.. .+.|++|||+|. ++.|.|||.+.+..... + ....+..+.+.... .. ......
T Consensus 1 k~G~l~--K~~~~~~kgWk~RwFiL~k~~~L~YyK~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (112)
T PF15413_consen 1 KEGYLY--KWGNKFGKGWKKRWFILRKDGVLSYYKIPRDKKDVRIIGEESSRVIRKGDWSISRRSSRIQGIKDKNPFGEI 78 (112)
T ss_dssp EEEEEE--E--TTS-S--EEEEEEEE-TTEEEEESS-------------TT-SB-SEEEE---GGGT-EEEES-T--SS-
T ss_pred CCceEE--EecCCCCcCccccEEEEEeCCEEEEeecccccccccccccchhceEeecccCcccccccccccccCCcccCc
Confidence 689777 66665 899999999999 99999999933321000 0 00000001111111 00 000011
Q ss_pred CCceeEEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 002837 86 DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELA 123 (875)
Q Consensus 86 ~Kk~~fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~a 123 (875)
..+ .+.|.+. .++|+|.|+|.+|+.+|+.||+.|
T Consensus 79 ~~~-~~~i~T~---~kt~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 79 HLK-VFSIFTP---TKTFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp SSE-EEEEE-S---S-EEEEEESSHHHHHHHHHHHHH-
T ss_pred CCC-CcEEECC---CcEEEEEECCHHHHHHHHHHHHhC
Confidence 122 3333322 389999999999999999999875
No 84
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.05 E-value=8.4e-10 Score=105.97 Aligned_cols=76 Identities=26% Similarity=0.424 Sum_probs=57.6
Q ss_pred CcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeec--------------cCCceeEEEEcCCCCCc
Q 002837 36 SWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR--------------EDKKLLTVLFPDGRDGR 101 (875)
Q Consensus 36 sWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~--------------~~Kk~~fiIt~~~~~gR 101 (875)
.|++|||||+++.|.||+++.+.. +++.|.++....+... ..+++.|.|... .|
T Consensus 32 ~w~kRWFvlr~s~L~Y~~~~~~~~---------~~~vil~D~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~i~t~---~R 99 (121)
T cd01254 32 RWQKRWFIVKESFLAYMDDPSSAQ---------ILDVILFDVDFKVNGGGKEDISLAVELKDITGLRHGLKITNS---NR 99 (121)
T ss_pred CCcceeEEEeCCEEEEEcCCCCCc---------eeeEEEEcCCccEEeCCcccccccccccccCCCceEEEEEcC---Cc
Confidence 699999999999999999988864 4444555443333221 245667777544 49
Q ss_pred eEEEEeCCHHHHHHHHHHHHHH
Q 002837 102 AFTLKAETSEDLYEWKTALELA 123 (875)
Q Consensus 102 ty~LqAdTeeE~~eWv~AI~~a 123 (875)
+|.|.|+|+.++.+|+++|+.|
T Consensus 100 ~~~l~a~s~~~~~~Wi~~i~~a 121 (121)
T cd01254 100 SLKLKCKSSRKLKQWMASIEDA 121 (121)
T ss_pred EEEEEeCCHHHHHHHHHHHHhC
Confidence 9999999999999999999864
No 85
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.99 E-value=3.5e-09 Score=98.47 Aligned_cols=98 Identities=12% Similarity=0.205 Sum_probs=68.1
Q ss_pred eEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCC-CCceeeeeeCceEeCCCcceeeccCCceeEEEEcCC
Q 002837 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQ-RGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDG 97 (875)
Q Consensus 19 V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~-~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiIt~~~ 97 (875)
.+|+|||. |.+...+.|+.|||+|-++.|.|++........ ......+.+.++.+.... ....++.|.|....
T Consensus 2 ~ikeG~L~--K~~~~~~~~k~RyffLFnd~Ll~~~~~~~~~~~~y~~~~~i~l~~~~v~~~~----~~~~~~~F~I~~~~ 75 (101)
T cd01219 2 LLKEGSVL--KISSTTEKTEERYLFLFNDLLLYCVPRKMIGGSKFKVRARIDVSGMQVCEGD----NLERPHSFLVSGKQ 75 (101)
T ss_pred cccceEEE--EEecCCCCceeEEEEEeCCEEEEEEcccccCCCcEEEEEEEecccEEEEeCC----CCCcCceEEEecCC
Confidence 57999665 777777899999999999999999964321100 001122444444443211 23456788886433
Q ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002837 98 RDGRAFTLKAETSEDLYEWKTALELALA 125 (875)
Q Consensus 98 ~~gRty~LqAdTeeE~~eWv~AI~~al~ 125 (875)
++|+|+|+|++|+.+|++||+.++.
T Consensus 76 ---rsf~l~A~s~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 76 ---RCLELQARTQKEKNDWVQAIFSIID 100 (101)
T ss_pred ---cEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999874
No 86
>PF15409 PH_8: Pleckstrin homology domain
Probab=98.97 E-value=3.4e-09 Score=96.23 Aligned_cols=86 Identities=27% Similarity=0.486 Sum_probs=60.6
Q ss_pred eeeeeeccCCCCCCcEEEEEEE--eCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEEEEcCCCCC
Q 002837 23 GPLFISSKGIGWKSWKKRWFIL--TRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDG 100 (875)
Q Consensus 23 G~L~l~KkG~~~ksWKKRWFVL--~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiIt~~~~~g 100 (875)
|||.++ ++...+.|++||||| ..+.|.||+++.+.. .-|.|+|..+ .+... .+...+.|-. ..
T Consensus 1 G~llKk-rr~~lqG~~kRyFvL~~~~G~LsYy~~~~~~~---------~rGsi~v~~a-~is~~-~~~~~I~ids---g~ 65 (89)
T PF15409_consen 1 GWLLKK-RRKPLQGWHKRYFVLDFEKGTLSYYRNQNSGK---------LRGSIDVSLA-VISAN-KKSRRIDIDS---GD 65 (89)
T ss_pred Ccceee-ccccCCCceeEEEEEEcCCcEEEEEecCCCCe---------eEeEEEccce-EEEec-CCCCEEEEEc---CC
Confidence 777643 344578899999999 889999999877652 2344555543 12222 2333444432 35
Q ss_pred ceEEEEeCCHHHHHHHHHHHHHH
Q 002837 101 RAFTLKAETSEDLYEWKTALELA 123 (875)
Q Consensus 101 Rty~LqAdTeeE~~eWv~AI~~a 123 (875)
.+|.|.|.++.+.+.|+.||+.|
T Consensus 66 ~i~hLKa~s~~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 66 EIWHLKAKSQEDFQRWVSALQKA 88 (89)
T ss_pred eEEEEEcCCHHHHHHHHHHHHhc
Confidence 89999999999999999999875
No 87
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=98.94 E-value=8.9e-09 Score=90.71 Aligned_cols=101 Identities=30% Similarity=0.477 Sum_probs=67.5
Q ss_pred eEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEEEEcCCC
Q 002837 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGR 98 (875)
Q Consensus 19 V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiIt~~~~ 98 (875)
++++|||+....+ ....|++|||+|.++.|.||++...... ......+.+.++.+...... ......++|.|....
T Consensus 1 ~~~~G~l~~~~~~-~~~~~~~~~~~L~~~~l~~~~~~~~~~~-~~~~~~i~l~~~~v~~~~~~-~~~~~~~~f~l~~~~- 76 (102)
T smart00233 1 VIKEGWLYKKSGG-KKKSWKKRYFVLFNSTLLYYKSEKAKKD-YKPKGSIDLSGITVREAPDP-DSAKKPHCFEIKTAD- 76 (102)
T ss_pred CceeEEEEEeCCC-ccCCceEEEEEEECCEEEEEeCCCcccc-CCCceEEECCcCEEEeCCCC-ccCCCceEEEEEecC-
Confidence 3689988755443 4678999999999999999998876321 11222233333322221110 001356778776543
Q ss_pred CCceEEEEeCCHHHHHHHHHHHHHHH
Q 002837 99 DGRAFTLKAETSEDLYEWKTALELAL 124 (875)
Q Consensus 99 ~gRty~LqAdTeeE~~eWv~AI~~al 124 (875)
+..|+|+|+|.+++..|+.+|+.++
T Consensus 77 -~~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 77 -RRSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred -CceEEEEcCCHHHHHHHHHHHHHhh
Confidence 3699999999999999999999875
No 88
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=98.91 E-value=3.7e-09 Score=101.17 Aligned_cols=103 Identities=24% Similarity=0.395 Sum_probs=59.5
Q ss_pred EEEeeeeee------ccCC--CCCCcEEEEEEEeCCeeeEecCCCCCCCCC-----CceeeeeeCceEeCCCcceee--c
Q 002837 20 FKSGPLFIS------SKGI--GWKSWKKRWFILTRTSLVFFKNDPSALPQR-----GGEVNLTLGGIDLNNSGSVVV--R 84 (875)
Q Consensus 20 ~KeG~L~l~------KkG~--~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~-----~~e~~i~Lg~I~L~~~~sV~~--~ 84 (875)
.|+|||+.+ .+.. ..+.|+..|+||+++.|++||+........ ..+..-+...|.|..+..... .
T Consensus 1 ~keG~l~RK~~~~~~gkk~~~~~R~Wk~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~a~a~~a~dY 80 (119)
T PF15410_consen 1 YKEGILMRKHELESGGKKASRSKRSWKQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHHALAEIASDY 80 (119)
T ss_dssp --EEEEEEEEEEECTTCC---S---EEEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-TT-EEEEETTB
T ss_pred CceEEEEEEEEEcCCCCCcCCCCCCccEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEecceEEEeCccc
Confidence 489988744 1112 467899999999999999999954221100 011111233355554333211 2
Q ss_pred cCCceeEEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 002837 85 EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (875)
Q Consensus 85 ~~Kk~~fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al 124 (875)
.++++.|.+.. .+|..|+|||.|.+||++||++|+-+.
T Consensus 81 ~Kr~~VFrL~~--~dg~e~Lfqa~~~~~m~~Wi~~IN~~A 118 (119)
T PF15410_consen 81 TKRKNVFRLRT--ADGSEYLFQASDEEEMNEWIDAINYAA 118 (119)
T ss_dssp TTCSSEEEEE---TTS-EEEEE-SSHHHHHHHHHHHHHH-
T ss_pred ccCCeEEEEEe--CCCCEEEEECCCHHHHHHHHHHHhhhc
Confidence 45778888874 468999999999999999999998764
No 89
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.82 E-value=2.1e-08 Score=91.46 Aligned_cols=99 Identities=32% Similarity=0.456 Sum_probs=74.4
Q ss_pred eEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEEEEc-CC
Q 002837 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFP-DG 97 (875)
Q Consensus 19 V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiIt~-~~ 97 (875)
|++.|||-+...|..+..=|.|||||+..+|+|||+..+..+++ .++|.++.+.....- -..+++||.++. ..
T Consensus 1 virkgwl~~~n~~~m~ggsK~~WFVLt~~~L~wykd~eeKE~ky----ilpLdnLk~Rdve~g--f~sk~~~FeLfnpd~ 74 (110)
T cd01256 1 VIRKGWLSISNVGIMKGGSKDYWFVLTSESLSWYKDDEEKEKKY----MLPLDGLKLRDIEGG--FMSRNHKFALFYPDG 74 (110)
T ss_pred CeeeeeEEeeccceecCCCcceEEEEecceeeeecccccccccc----eeeccccEEEeeccc--ccCCCcEEEEEcCcc
Confidence 67899998887766566679999999999999999998876443 457777766654321 135678998863 22
Q ss_pred ----CCCceEEEEeCCHHHHHHHHHHHHHH
Q 002837 98 ----RDGRAFTLKAETSEDLYEWKTALELA 123 (875)
Q Consensus 98 ----~~gRty~LqAdTeeE~~eWv~AI~~a 123 (875)
.+-++.-|.|+|++++..|.+.+-.|
T Consensus 75 rnvykd~k~lel~~~~~e~vdswkasflra 104 (110)
T cd01256 75 RNVYKDYKQLELGCETLEEVDSWKASFLRA 104 (110)
T ss_pred cccccchheeeecCCCHHHHHHHHHHHHhc
Confidence 23468899999999999999877543
No 90
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.70 E-value=5.9e-08 Score=84.68 Aligned_cols=92 Identities=32% Similarity=0.551 Sum_probs=62.2
Q ss_pred EEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeec-c--CCceeEEEEcCC
Q 002837 21 KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR-E--DKKLLTVLFPDG 97 (875)
Q Consensus 21 KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~-~--~Kk~~fiIt~~~ 97 (875)
++|||+....+. ...|++|||+|.++.|.+|+...... ... ..+.|+|.. ..+... . ...++|.|...
T Consensus 1 ~~G~l~~~~~~~-~~~w~~~~~~L~~~~l~~~~~~~~~~-~~~-----~~~~i~l~~-~~v~~~~~~~~~~~~f~i~~~- 71 (96)
T cd00821 1 KEGYLLKKTGKL-RKGWKRRWFVLFNDLLLYYKKKSSKK-SYK-----PKGSIPLSG-AEVEESPDDSGRKNCFEIRTP- 71 (96)
T ss_pred CcchhhhhhChh-hCCccEEEEEEECCEEEEEECCCCCc-CCC-----CcceEEcCC-CEEEECCCcCCCCcEEEEecC-
Confidence 469777444332 47899999999999999999876531 011 222344443 111111 1 24678888753
Q ss_pred CCCceEEEEeCCHHHHHHHHHHHHH
Q 002837 98 RDGRAFTLKAETSEDLYEWKTALEL 122 (875)
Q Consensus 98 ~~gRty~LqAdTeeE~~eWv~AI~~ 122 (875)
+++.|+|+|+|..++..|+.+|+.
T Consensus 72 -~~~~~~~~~~s~~~~~~W~~~l~~ 95 (96)
T cd00821 72 -DGRSYLLQAESEEEREEWIEALQS 95 (96)
T ss_pred -CCcEEEEEeCCHHHHHHHHHHHhc
Confidence 248999999999999999999975
No 91
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=98.69 E-value=1.3e-07 Score=83.14 Aligned_cols=96 Identities=26% Similarity=0.458 Sum_probs=64.3
Q ss_pred EeeeeeeccCC--CCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEEEEcCCCC
Q 002837 22 SGPLFISSKGI--GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRD 99 (875)
Q Consensus 22 eG~L~l~KkG~--~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiIt~~~~~ 99 (875)
+|||....... ....|++|||+|.+..|.||+.+....... ..+++..+.+..... .....++|.+......
T Consensus 2 ~g~l~~~~~~~~~~~~~w~~~~~~l~~~~l~~~~~~~~~~~~~---~~~~l~~~~v~~~~~---~~~~~~~F~i~~~~~~ 75 (99)
T cd00900 2 EGYLLKLGSDDVSKGKRWKRRWFFLFDDGLLLYKSDDKKEIKP---GSIPLSEISVEEDPD---GSDDPNCFAIVTKDRG 75 (99)
T ss_pred ccEEEEeCCCccccccCceeeEEEEECCEEEEEEcCCCCcCCC---CEEEccceEEEECCC---CCCCCceEEEECCCCC
Confidence 58776444332 257899999999999999999987764211 123444433222111 1135677877643223
Q ss_pred CceEEEEeCCHHHHHHHHHHHHHH
Q 002837 100 GRAFTLKAETSEDLYEWKTALELA 123 (875)
Q Consensus 100 gRty~LqAdTeeE~~eWv~AI~~a 123 (875)
.+.|+|+|+|.+++..|+.+|+.+
T Consensus 76 ~~~~~~~~~~~~~~~~W~~al~~~ 99 (99)
T cd00900 76 RRVFVFQADSEEEAQEWVEALQQA 99 (99)
T ss_pred cEEEEEEcCCHHHHHHHHHHHhcC
Confidence 699999999999999999999853
No 92
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.68 E-value=1.1e-07 Score=88.42 Aligned_cols=95 Identities=20% Similarity=0.306 Sum_probs=61.6
Q ss_pred EEeeeeeeccCCCCCCcEEEEEEEeCC--eee--EecCCCCCCCCCC---ceeeeeeCceEeCCCcceeeccCCceeEEE
Q 002837 21 KSGPLFISSKGIGWKSWKKRWFILTRT--SLV--FFKNDPSALPQRG---GEVNLTLGGIDLNNSGSVVVREDKKLLTVL 93 (875)
Q Consensus 21 KeG~L~l~KkG~~~ksWKKRWFVL~~~--~L~--YYKd~~~~~p~~~---~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiI 93 (875)
|+||||++.++.....|.+.||...+. .+. -+...... +.++ ....+.|..|.+... ...+++|||.|
T Consensus 1 k~GYLy~~~k~~~~~~Wvk~y~~~~~~~~~f~m~~~~q~s~~-~~~g~v~~~e~~~l~sc~~r~~----~~~dRRFCFei 75 (104)
T cd01249 1 KEGYLYMQEKSKFGGSWTKYYCTYSKETRIFTMVPFNQKTKT-DMKGAVAQDETLTLKSCSRRKT----ESIDKRFCFDV 75 (104)
T ss_pred CCceEEEEcCCCCCCeEEEEEEEEEcCCcEEEEEeccccccc-ccCcccccceEEeeeecccccc----CCccceeeEee
Confidence 589999998877777899999999875 321 12222101 1111 111222233333322 33689999998
Q ss_pred EcCCCCCceEEEEeCCHHHHHHHHHHHH
Q 002837 94 FPDGRDGRAFTLKAETSEDLYEWKTALE 121 (875)
Q Consensus 94 t~~~~~gRty~LqAdTeeE~~eWv~AI~ 121 (875)
+..... .+++|||+++.++..||.||.
T Consensus 76 ~~~~~~-~~~~lQA~Se~~~~~Wi~A~d 102 (104)
T cd01249 76 EVEEKP-GVITMQALSEKDRRLWIEAMD 102 (104)
T ss_pred eecCCC-CeEEEEecCHHHHHHHHHhhc
Confidence 765533 479999999999999999984
No 93
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.56 E-value=7.6e-08 Score=88.55 Aligned_cols=97 Identities=20% Similarity=0.377 Sum_probs=67.5
Q ss_pred EEEeeeeeeccCC-CCCCcEEEEEEEeCCe-----eeEecCCCCCCCCCCceeeeeeCceEeCCCccee-------eccC
Q 002837 20 FKSGPLFISSKGI-GWKSWKKRWFILTRTS-----LVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV-------VRED 86 (875)
Q Consensus 20 ~KeG~L~l~KkG~-~~ksWKKRWFVL~~~~-----L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~-------~~~~ 86 (875)
.++|||| +.|+ .+|.||||||+|++-+ +.-|+.++. .+...+.|.|..++.+.... ....
T Consensus 3 k~sGyL~--k~Gg~~~KkWKKRwFvL~qvsQYtfamcsy~ekks-----~P~e~~qldGyTvDy~~~~~~~~~~~~~~~g 75 (117)
T cd01234 3 KHCGYLY--AIGKNVWKKWKKRFFVLVQVSQYTFAMCSYREKKA-----EPTEFIQLDGYTVDYMPESDPDPNSELSLQG 75 (117)
T ss_pred ceeEEEE--eccchhhhhhheeEEEEEchhHHHHHHHhhhhhcC-----CchhheeecceEEeccCCCCCCccccccccc
Confidence 4899777 6665 7999999999999753 444554332 23455678887777654432 1124
Q ss_pred CceeEEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002837 87 KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (875)
Q Consensus 87 Kk~~fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~~ 126 (875)
.+++|-..- -|-...|..+++.|+.-||+||=.|..+
T Consensus 76 g~~ff~avk---egd~~~fa~~de~~r~lwvqa~yratgq 112 (117)
T cd01234 76 GRHFFNAVK---EGDELKFATDDENERHLWVQAMYRATGQ 112 (117)
T ss_pred chhhhheec---cCcEEEEeccchHHHHHHHHHHHHHcCc
Confidence 555554432 3578999999999999999999888654
No 94
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=98.54 E-value=1.1e-07 Score=103.40 Aligned_cols=107 Identities=18% Similarity=0.300 Sum_probs=77.5
Q ss_pred CCCceEEEeeeeeeccCCCCCCcEEEEEEEeC-CeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEEE
Q 002837 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTR-TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVL 93 (875)
Q Consensus 15 ~s~~V~KeG~L~l~KkG~~~ksWKKRWFVL~~-~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiI 93 (875)
....|+|+|||+ |+|...++|+.|||+|.. +.|.-|+.++....+. ..+|....+..|..+.....+++.|+|
T Consensus 11 ~~~~vvkEgWlh--KrGE~IknWRpRYF~l~~DG~~~Gyr~kP~~~~~~----p~pLNnF~v~~cq~m~~erPrPntFii 84 (516)
T KOG0690|consen 11 SQEDVVKEGWLH--KRGEHIKNWRPRYFLLFNDGTLLGYRSKPKEVQPT----PEPLNNFMVRDCQTMKTERPRPNTFII 84 (516)
T ss_pred chhhhHHhhhHh--hcchhhhcccceEEEEeeCCceEeeccCCccCCCC----cccccchhhhhhhhhhccCCCCceEEE
Confidence 345699999666 889899999999999974 7888888776543211 135555555555544445567777877
Q ss_pred Ec-CCCCCceEEEEeCCHHHHHHHHHHHHHHHhhC
Q 002837 94 FP-DGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (875)
Q Consensus 94 t~-~~~~gRty~LqAdTeeE~~eWv~AI~~al~~a 127 (875)
.. ..+.-..-+|.+++.+++++|+.||+.+....
T Consensus 85 RcLQWTTVIERTF~ves~~eRq~W~~AIq~vsn~l 119 (516)
T KOG0690|consen 85 RCLQWTTVIERTFYVESAEERQEWIEAIQAVSNRL 119 (516)
T ss_pred EeeeeeeeeeeeeecCCHHHHHHHHHHHHHHhhhh
Confidence 43 33334567899999999999999999987644
No 95
>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=98.50 E-value=9e-08 Score=111.00 Aligned_cols=171 Identities=15% Similarity=0.171 Sum_probs=142.2
Q ss_pred cCCCCCCCcccccchHHHhhhcCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHH-----HHHHHhcCCCCCCCCCC
Q 002837 156 RDKRPVKSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDR-----RVQEYEQGKTEFSADED 230 (875)
Q Consensus 156 k~k~~~k~~VFGvpL~~ll~~~~~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~-----L~~~ld~G~~~~~~~~D 230 (875)
.....+...-||+||+..|.+++.+|..|......|...+..++++||..-...-+.+ ..+....|.....+...
T Consensus 407 a~e~~l~kv~fdaPlS~~c~d~gk~prPlq~~~tll~kknp~tpn~fprt~~~Alv~ks~s~~s~dd~s~gr~vdv~ssp 486 (741)
T KOG4724|consen 407 ALESELAKVPFDAPLSVFCADQGKTPRPLQIQSTLLKKKNPATPNVFPRTNDEALVLKAFSSSSLDDSSDGRPVDVPSSP 486 (741)
T ss_pred hhhhhhhhCcCCCchhhcccccCCCCCChhhhhHHHHhcCCCCCccCCCccchhhhhhcccccchhhhccCCcccCCCCC
Confidence 3445566778999999999999999999988888999999999999998544333322 22223336666666779
Q ss_pred cchhhhhhhhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHH-------HHHhhCChhHHHHHHHHHHHHHHHhcC
Q 002837 231 AHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRS-------AILETFPEPNRRLLQRILRMMHTISSH 303 (875)
Q Consensus 231 ~h~VAslLK~fLReLPePLLp~~ly~~~i~~~~~~~~eeri~~l~~-------lLl~~LP~~N~~lL~~Ll~~L~~Va~~ 303 (875)
+|.+++++|.|+|.+|..++..+.+.+++++.....++++.++++. ......|..++.+....+.-.+.+..+
T Consensus 487 v~taasv~KdfnRKtpRgi~sr~ihke~~ea~~lq~EedrtEaLk~~~gks~~fv~~~~Prg~s~~~shsvf~~~i~S~n 566 (741)
T KOG4724|consen 487 VHTAASVHKDFNRKTPRGIPSREIHKESMEATFLQHEEDRTEALKAGSGKSQDFVRDHVPRGGSNVRKHSVFAGRIVSEN 566 (741)
T ss_pred chHHHHHHHHhhhhcCCCccchHHHHHhhhhhhccchHHHHHHHHhhcCCcccccccCCCCCcccccccccccceecccc
Confidence 9999999999999999999999999999999999999999999985 134688889888888888888889999
Q ss_pred cCCCCCCccchhhhccccccCCC
Q 002837 304 AHENRMTPSAVAACMAPLLLRPL 326 (875)
Q Consensus 304 s~~NKMta~NLAi~FaP~LLrp~ 326 (875)
+..+.|+..|++.|..|+++...
T Consensus 567 se~~s~dsSn~~~csrpn~~tvd 589 (741)
T KOG4724|consen 567 SEETSNDSSNPGFCSRPNALTVD 589 (741)
T ss_pred cccccccccccCCCCCccccchh
Confidence 99999999999999999998754
No 96
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.43 E-value=2.2e-06 Score=79.66 Aligned_cols=97 Identities=19% Similarity=0.146 Sum_probs=58.8
Q ss_pred eEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEEEEcCCC
Q 002837 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGR 98 (875)
Q Consensus 19 V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiIt~~~~ 98 (875)
.+|+|+|.+. +. ...|.|+||.+.+..||+.+...+. .+......++|.++.+..... ....+++|.|...
T Consensus 2 ~ikEG~L~K~--~~-k~~~~R~~FLFnD~LlY~~~~~~~~-~~y~~~~~i~L~~~~V~~~~~---~~~~~~~F~I~~~-- 72 (99)
T cd01220 2 FIRQGCLLKL--SK-KGLQQRMFFLFSDLLLYTSKSPTDQ-NSFRILGHLPLRGMLTEESEH---EWGVPHCFTIFGG-- 72 (99)
T ss_pred eeeEEEEEEE--eC-CCCceEEEEEccceEEEEEeecCCC-ceEEEEEEEEcCceEEeeccC---CcCCceeEEEEcC--
Confidence 5899987743 32 3456766665555444444432211 000112234555554443211 1245678888743
Q ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002837 99 DGRAFTLKAETSEDLYEWKTALELALA 125 (875)
Q Consensus 99 ~gRty~LqAdTeeE~~eWv~AI~~al~ 125 (875)
.+.|.|+|.|++|+.+|+.+|+.++.
T Consensus 73 -~ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 73 -QCAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred -CeEEEEECCCHHHHHHHHHHHHHHhh
Confidence 48999999999999999999999874
No 97
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.39 E-value=3.4e-06 Score=80.21 Aligned_cols=104 Identities=15% Similarity=0.180 Sum_probs=74.2
Q ss_pred EEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCce--eeeee--CceEeCCCcc--ee--eccCCceeE
Q 002837 20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGE--VNLTL--GGIDLNNSGS--VV--VREDKKLLT 91 (875)
Q Consensus 20 ~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e--~~i~L--g~I~L~~~~s--V~--~~~~Kk~~f 91 (875)
..+|||.+.+.++..+.|.++|+||.+..|++|..+.+...+...+ ..+++ +.+.+...+. |. ...+-+++|
T Consensus 3 ~~EGwvkvP~~~~~krGW~r~~vVv~~~Kl~lYd~e~~k~~~p~~~~~~vLdlrD~~fsV~~VtasDvi~a~~kDiP~If 82 (122)
T cd01243 3 AYEGHVKIPKPGGVKKGWQRALVVVCDFKLFLYDIAEDRASQPSVVISQVLDMRDPEFSVSSVLESDVIHASKKDIPCIF 82 (122)
T ss_pred cceeeEeccCCCCcccCceEEEEEEeCCEEEEEeCCccccCCccCceeEEEEcCCCCEEEEEecHHHccccCcccCCeEE
Confidence 4689999888877778999999999999999999877654333333 44455 2355543332 21 123445677
Q ss_pred EEEc----CCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 002837 92 VLFP----DGRDGRAFTLKAETSEDLYEWKTALELA 123 (875)
Q Consensus 92 iIt~----~~~~gRty~LqAdTeeE~~eWv~AI~~a 123 (875)
.|+. ....+.+.||-|++..|...|+.||...
T Consensus 83 ~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l 118 (122)
T cd01243 83 RVTTSQISASSSKCSTLMLADTEEEKSKWVGALSEL 118 (122)
T ss_pred EEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHH
Confidence 7754 2235689999999999999999999875
No 98
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.35 E-value=1.2e-06 Score=82.11 Aligned_cols=101 Identities=24% Similarity=0.338 Sum_probs=63.5
Q ss_pred EEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCC--CcceeeccCCceeEEEEcCCC
Q 002837 21 KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNN--SGSVVVREDKKLLTVLFPDGR 98 (875)
Q Consensus 21 KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~--~~sV~~~~~Kk~~fiIt~~~~ 98 (875)
.+||||++.-| .++|||+||+|++.-|+|+-..+...+.... -...+.+.+|-. ...-.-+....++|.+.+...
T Consensus 2 ~~g~LylK~~g--kKsWKk~~f~LR~SGLYy~~Kgksk~srdL~-cl~~f~~~nvY~~~~~kKk~kAPTd~~F~~K~~~~ 78 (114)
T cd01259 2 MEGPLYLKADG--KKSWKKYYFVLRSSGLYYFPKEKTKNTRDLA-CLNLLHGHNVYTGLGWRKKYKSPTDYCFGFKAVGD 78 (114)
T ss_pred ccceEEEccCC--CccceEEEEEEeCCeeEEccCCCcCCHHHHH-HHHhcccCcEEEEechhhccCCCCCceEEEecccc
Confidence 47999987765 5899999999999999988765544322100 000111111110 001111234457898865332
Q ss_pred ----CCceEEEEeCCHHHHHHHHHHHHHHH
Q 002837 99 ----DGRAFTLKAETSEDLYEWKTALELAL 124 (875)
Q Consensus 99 ----~gRty~LqAdTeeE~~eWv~AI~~al 124 (875)
..-..+|+|+++..+..|+.|||-+.
T Consensus 79 q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~K 108 (114)
T cd01259 79 QSKGSQSIKYLCAEDLPTLDRWLTAIRIAK 108 (114)
T ss_pred CcccchhheeeccCCHHHHHHHHHHHHHHh
Confidence 23468999999999999999999764
No 99
>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]
Probab=98.34 E-value=2e-07 Score=111.08 Aligned_cols=94 Identities=27% Similarity=0.506 Sum_probs=73.6
Q ss_pred CceEEEeeeeeeccCCCCCCcEEEEEEEeC--CeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceee---c-cCCcee
Q 002837 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTR--TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV---R-EDKKLL 90 (875)
Q Consensus 17 ~~V~KeG~L~l~KkG~~~ksWKKRWFVL~~--~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~---~-~~Kk~~ 90 (875)
.+-+.+|+|| |+|...|.||.|||||.. .+|+||.+..+++|+ |.|+|....+|.. + -+.|-+
T Consensus 1632 eNr~~eG~Ly--KrGA~lK~Wk~RwFVLd~~khqlrYYd~~edt~pk---------G~IdLaevesv~~~~~k~vdekgf 1700 (1732)
T KOG1090|consen 1632 ENRIPEGYLY--KRGAKLKLWKPRWFVLDPDKHQLRYYDDFEDTKPK---------GCIDLAEVESVALIGPKTVDEKGF 1700 (1732)
T ss_pred cccCcccchh--hcchhhcccccceeEecCCccceeeeccccccccc---------chhhhhhhhhhcccCccccCccce
Confidence 3456699777 899999999999999986 589999999988744 4566666555433 1 345556
Q ss_pred EEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 002837 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (875)
Q Consensus 91 fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al 124 (875)
|.+... .|+|-|+|.+....++|+..|+.++
T Consensus 1701 fdlktt---~rvynf~a~nin~AqqWve~iqscl 1731 (1732)
T KOG1090|consen 1701 FDLKTT---NRVYNFCAQNINLAQQWVECIQSCL 1731 (1732)
T ss_pred eeeehh---hHHHHHHhccchHHHHHHHHHHHhh
Confidence 777543 4999999999999999999999876
No 100
>KOG3640 consensus Actin binding protein Anillin [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.24 E-value=1.4e-06 Score=104.31 Aligned_cols=105 Identities=26% Similarity=0.400 Sum_probs=76.7
Q ss_pred CCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeecc------CCce
Q 002837 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE------DKKL 89 (875)
Q Consensus 16 s~~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~------~Kk~ 89 (875)
+-.|.-.|||++..-+.++..|+||||+|.++.+.|||.+.+.+.+. +++.|+|+.|++-.... .+.+
T Consensus 987 ~idVEYrGFLtmfed~sgfGaWhRyWc~L~gg~I~fWk~PdDEkrK~------Pig~IDLt~CTsq~ie~a~rdicar~n 1060 (1116)
T KOG3640|consen 987 AIDVEYRGFLTMFEDGSGFGAWHRYWCALHGGEIKFWKYPDDEKRKV------PIGQIDLTKCTSQSIEEARRDICARPN 1060 (1116)
T ss_pred ccceeeeeeeeeeeccCCCchhhhhhHHhcCCeeeeecCcchhcccC------cceeeehhhhhccccccchhhhccCCc
Confidence 34467779999888888888999999999999999999988875332 77888888887722211 1222
Q ss_pred eEEEE---cCCC-------CCc-eEEEEeCCHHHHHHHHHHHHHHHhh
Q 002837 90 LTVLF---PDGR-------DGR-AFTLKAETSEDLYEWKTALELALAQ 126 (875)
Q Consensus 90 ~fiIt---~~~~-------~gR-ty~LqAdTeeE~~eWv~AI~~al~~ 126 (875)
-|.|. |... -.| ..+|.|+|.++++.|+.+|+.++..
T Consensus 1061 tFhie~~rPl~~Dqep~~ie~r~Rv~LaADTkeel~~Wls~iN~tL~~ 1108 (1116)
T KOG3640|consen 1061 TFHIEVWRPLEDDQEPLLIEKRLRVMLAADTKEELQSWLSAINDTLKQ 1108 (1116)
T ss_pred eeEEEeecccccccCcchhhhcceeeeecccHHHHHHHHHHHHHHHHH
Confidence 33332 1110 113 6899999999999999999999863
No 101
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.17 E-value=2.3e-05 Score=73.61 Aligned_cols=102 Identities=13% Similarity=0.284 Sum_probs=69.7
Q ss_pred EEeeeeeeccCCC--CCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCc-eEeCCCcc--ee--eccCCceeEEE
Q 002837 21 KSGPLFISSKGIG--WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGG-IDLNNSGS--VV--VREDKKLLTVL 93 (875)
Q Consensus 21 KeG~L~l~KkG~~--~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~-I~L~~~~s--V~--~~~~Kk~~fiI 93 (875)
.+|||-+.+.++. .+.|++.|+||.+..|++|..+.+..... +...+.++. +.+...+. |. ...+-+++|.|
T Consensus 2 lEGwlsvP~~~~~~~k~gW~r~yvVv~~~Kl~lYd~e~~~~~~~-p~~vldl~~~fhv~~V~asDVi~a~~kDiP~IF~I 80 (112)
T cd01242 2 MEGWLSLPNRTNKSRKPGWKKQYVVVSSRKILFYNDEQDKENST-PSMILDIDKLFHVRPVTQGDVYRADAKEIPKIFQI 80 (112)
T ss_pred cceeEEccCCCCccccCCceEEEEEEeCCEEEEEecCccccCCC-cEEEEEccceeeeecccHHHeeecCcccCCeEEEE
Confidence 4898877777554 46899999999999999999877653222 223333332 33333222 21 12344567777
Q ss_pred EcCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 002837 94 FPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (875)
Q Consensus 94 t~~~~~gRty~LqAdTeeE~~eWv~AI~~al 124 (875)
+.. ..+++.+|-|+++.|.+.|+.+|.+-+
T Consensus 81 ~~~-~~~~~lllLA~s~~ek~kWV~~L~~~~ 110 (112)
T cd01242 81 LYA-NEARDLLLLAPQTDEQNKWVSRLVKKI 110 (112)
T ss_pred EeC-CccceEEEEeCCchHHHHHHHHHHHhc
Confidence 653 346999999999999999999998765
No 102
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=98.08 E-value=2.2e-05 Score=73.66 Aligned_cols=91 Identities=24% Similarity=0.285 Sum_probs=60.2
Q ss_pred CCceEEEeeeeeeccCCCCCCcEEEEEEEeCC-eeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEEEE
Q 002837 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRT-SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLF 94 (875)
Q Consensus 16 s~~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~-~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiIt 94 (875)
+..++++|+|. |+++.. +++|||+|+++ .|+|+...... .-|.|.++....+..... +.|++.+
T Consensus 10 ge~Il~~g~v~--K~kgl~--~kkR~liLTd~PrL~Yvdp~~~~----------~KGeI~~~~~l~v~~k~~-~~F~I~t 74 (104)
T PF14593_consen 10 GELILKQGYVK--KRKGLF--AKKRQLILTDGPRLFYVDPKKMV----------LKGEIPWSKELSVEVKSF-KTFFIHT 74 (104)
T ss_dssp T--EEEEEEEE--EEETTE--EEEEEEEEETTTEEEEEETTTTE----------EEEEE--STT-EEEECSS-SEEEEEE
T ss_pred CCeEEEEEEEE--EeeceE--EEEEEEEEccCCEEEEEECCCCe----------ECcEEecCCceEEEEccC-CEEEEEC
Confidence 67799999766 433323 89999999998 77777765443 346688887666655433 3456666
Q ss_pred cCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002837 95 PDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (875)
Q Consensus 95 ~~~~~gRty~LqAdTeeE~~eWv~AI~~al~~ 126 (875)
| +|+|+|... ...+..|+++|+.+...
T Consensus 75 p----~RtY~l~d~-~~~A~~W~~~I~~~~~~ 101 (104)
T PF14593_consen 75 P----KRTYYLEDP-EGNAQQWVEAIEEVKKQ 101 (104)
T ss_dssp T----TEEEEEE-T-TS-HHHHHHHHHHHHHH
T ss_pred C----CcEEEEECC-CCCHHHHHHHHHHHHHH
Confidence 5 599999884 55688899999998763
No 103
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.06 E-value=8e-06 Score=95.88 Aligned_cols=114 Identities=28% Similarity=0.383 Sum_probs=77.2
Q ss_pred CCceEEEeeeeeeccCC---CCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeec----cCCc
Q 002837 16 SNTVFKSGPLFISSKGI---GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR----EDKK 88 (875)
Q Consensus 16 s~~V~KeG~L~l~KkG~---~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~----~~Kk 88 (875)
...|.|+|.+....+|. +.+.+|||||-|+...|.|.|++... +.+.|.|.++..|..- .+.+
T Consensus 562 ~p~v~k~glm~kr~~gr~~~~~~~FKKryf~LT~~~Ls~~Ksp~~q----------~~~~Ipl~nI~avEklee~sF~~k 631 (800)
T KOG2059|consen 562 EPVVLKEGLMIKRAQGRGRFGKKNFKKRYFRLTTEELSYAKSPGKQ----------PIYTIPLSNIRAVEKLEEKSFKMK 631 (800)
T ss_pred CCceecccceEeccccccchhhhhhhheEEEeccceeEEecCCccC----------cccceeHHHHHHHHHhhhhccCCC
Confidence 34466666554443332 24678999999999999999998765 5566777776554321 2334
Q ss_pred eeE-EEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHhhCCcchhccCCcccccCCC
Q 002837 89 LLT-VLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAALVMGHNGIFRNDT 144 (875)
Q Consensus 89 ~~f-iIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~~aP~~a~~~g~~~if~~~~ 144 (875)
++| +|..+ |+.||||.+.-|.++|+++|+++....+.. ...-+.|-|+.+.
T Consensus 632 nv~qVV~~d----rtly~Q~~n~vEandWldaL~kvs~~N~~r-Las~HPgaF~s~~ 683 (800)
T KOG2059|consen 632 NVFQVVHTD----RTLYVQAKNCVEANDWLDALRKVSCCNQNR-LASYHPGAFRSDS 683 (800)
T ss_pred ceEEEEecC----cceeEecCCchHHHHHHHHHHHHhccCcch-hhhcCCcccccCc
Confidence 444 55543 799999999999999999999997633221 1223556676653
No 104
>PF08101 DUF1708: Domain of unknown function (DUF1708); InterPro: IPR012965 This is a fungal domain of unknown function, though the yeast protein MSB1(P21339 from SWISSPROT) which contains this domain is thought to play a role in bud formation [].
Probab=98.06 E-value=1.9e-05 Score=90.40 Aligned_cols=146 Identities=12% Similarity=0.179 Sum_probs=117.2
Q ss_pred CcHHHHHHHHHHHhcCCcccCcc---ccCCCHHHHHHHHHHH-hcCCCC--C--------CCCCCcchhhhhhhhhhccC
Q 002837 180 GPSFLEKALRFLEKFGTKVEGIL---RQAADVEEVDRRVQEY-EQGKTE--F--------SADEDAHVIGDCVKHVLREL 245 (875)
Q Consensus 180 VP~iL~~~i~~Le~~Gl~~EGIF---RisG~~~~V~~L~~~l-d~G~~~--~--------~~~~D~h~VAslLK~fLReL 245 (875)
|=.+|..|...|..+|+++++|| |..-+...++.++..| ..+... . ....++|+++++||..+..|
T Consensus 8 v~~li~~~t~elK~rgldtp~lllpfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~~el~~~~~~~L~~~LKw~w~RL 87 (420)
T PF08101_consen 8 VKDLIHACTEELKSRGLDTPFLLLPFRPDSDPSALRRFIRSFFPQGNGSPVLDGEALIQELRFTSPHTLISVLKWIWSRL 87 (420)
T ss_pred HHHHHHHHHHHHHhccCCCchhccCCCCCCCHHHHHHHHHHhCCCccCcccccHHHHHHHHhcCCchHHHHHHHHHHHHc
Confidence 34578889999999999999997 6667788888877755 333321 1 13469999999999999999
Q ss_pred CCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHHhcCcCCCCCCccchhhhccccccC
Q 002837 246 PSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFP-EPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLR 324 (875)
Q Consensus 246 PePLLp~~ly~~~i~~~~~~~~eeri~~l~~lLl~~LP-~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~FaP~LLr 324 (875)
|..+|+.+.|..|...-+..+ -...++..+|-..|| +.|..++..++.+|..|+.|+..|+|+..-|+-.+|+-+|.
T Consensus 88 p~gvVgW~~Y~~Fk~~E~~~~--yp~~AF~~~lp~~l~s~a~~~Iv~dFfdLL~sIaa~s~~NglsgrKlsrm~g~WaF~ 165 (420)
T PF08101_consen 88 PGGVVGWDSYEEFKRREREAG--YPRDAFLTFLPQCLPSPAHASIVYDFFDLLSSIAAHSKKNGLSGRKLSRMAGIWAFG 165 (420)
T ss_pred CCCccccHHHHHHHHHHhhcC--CChHHHHHhccccCCChhHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHCC
Confidence 999999999999977644332 234556665656674 66788999999999999999999999999999999999998
Q ss_pred CCC
Q 002837 325 PLL 327 (875)
Q Consensus 325 p~~ 327 (875)
...
T Consensus 166 ~~~ 168 (420)
T PF08101_consen 166 HPD 168 (420)
T ss_pred CCC
Confidence 764
No 105
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=97.65 E-value=9.1e-05 Score=84.81 Aligned_cols=105 Identities=23% Similarity=0.278 Sum_probs=63.8
Q ss_pred ceEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCc--eEeCCCcceeeccCCceeEEEEc
Q 002837 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGG--IDLNNSGSVVVREDKKLLTVLFP 95 (875)
Q Consensus 18 ~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~--I~L~~~~sV~~~~~Kk~~fiIt~ 95 (875)
....+||||++..| +|.|||.||||+...|||+-..+...+....-+ ..+.+ |.......-.-+....++|-|.+
T Consensus 316 ~pei~GfL~~K~dg--kKsWKk~yf~LR~SGLYys~K~tsk~~r~Lq~l-~~~~~snVYt~i~~rKkyksPTd~~f~~K~ 392 (622)
T KOG3751|consen 316 PPEIQGFLYLKEDG--KKSWKKHYFVLRRSGLYYSTKGTSKEPRHLQCL-ADLHSSNVYTGIGGRKKYKSPTDYGFCIKP 392 (622)
T ss_pred Cccccceeeecccc--cccceeEEEEEecCcceEccCCCCCCchhhHHH-HhcccCceEEeecchhccCCCCCceEEeee
Confidence 35678999977655 589999999999999999987666554321100 00111 11000000000112224666655
Q ss_pred CCC-C--CceEEEEeCCHHHHHHHHHHHHHHHh
Q 002837 96 DGR-D--GRAFTLKAETSEDLYEWKTALELALA 125 (875)
Q Consensus 96 ~~~-~--gRty~LqAdTeeE~~eWv~AI~~al~ 125 (875)
... + .-.-+|||+++..+..|+.||+-+..
T Consensus 393 ~~~~~~~r~lk~lCAEDe~t~~~WltAiRl~Ky 425 (622)
T KOG3751|consen 393 NKLRNKRRFLKMLCAEDEQTRTCWLTAIRLLKY 425 (622)
T ss_pred ccccCcccceeeeecccchhHHHHHHHHHHHHH
Confidence 321 1 23568999999999999999997753
No 106
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.62 E-value=0.00062 Score=64.07 Aligned_cols=98 Identities=18% Similarity=0.187 Sum_probs=64.1
Q ss_pred ceEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEEEEcCC
Q 002837 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDG 97 (875)
Q Consensus 18 ~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiIt~~~ 97 (875)
..+++|.|. |.. ++..+.|||.|-.+.|+|-+-..... +......++|.++.+..... ...-++.|.|...
T Consensus 3 ~li~eG~L~--K~~--rk~~~~R~ffLFnD~LvY~~~~~~~~-~~~~~~~i~L~~~~v~~~~d---~~~~~n~f~I~~~- 73 (104)
T cd01218 3 VLVGEGVLT--KMC--RKKPKQRQFFLFNDILVYGNIVISKK-KYNKQHILPLEGVQVESIED---DGIERNGWIIKTP- 73 (104)
T ss_pred EEEecCcEE--Eee--cCCCceEEEEEecCEEEEEEeecCCc-eeeEeeEEEccceEEEecCC---cccccceEEEecC-
Confidence 468899776 322 45578899999999999954311110 01112335666665544322 1233456666533
Q ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002837 98 RDGRAFTLKAETSEDLYEWKTALELALAQ 126 (875)
Q Consensus 98 ~~gRty~LqAdTeeE~~eWv~AI~~al~~ 126 (875)
.+.|.++|+|++|..+|+++|+.++.+
T Consensus 74 --~kSf~v~A~s~~eK~eWl~~i~~ai~~ 100 (104)
T cd01218 74 --TKSFAVYAATETEKREWMLHINKCVTD 100 (104)
T ss_pred --CeEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999864
No 107
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=97.53 E-value=0.00038 Score=83.50 Aligned_cols=104 Identities=18% Similarity=0.259 Sum_probs=73.7
Q ss_pred CceEEEeeeeeeccCC-CCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccC----CceeE
Q 002837 17 NTVFKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED----KKLLT 91 (875)
Q Consensus 17 ~~V~KeG~L~l~KkG~-~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~----Kk~~f 91 (875)
+.+..+||||.-.... +..-.++|||||.+..|.|||.++... .++++...|+....|..... .+.+|
T Consensus 2 ~~~~~eGW~y~~g~~kig~~~~~~Ry~vl~~~~~~~yK~~P~~~-------~~pirs~~id~~~rVed~Gr~~~~g~~~y 74 (719)
T PLN00188 2 SKVVYEGWMVRYGRRKIGRSYIHMRYFVLESRLLAYYKKKPQDN-------QVPIKTLLIDGNCRVEDRGLKTHHGHMVY 74 (719)
T ss_pred CcceEeeEEEEEcccccccccceeEEEEEecchhhhcccCCccc-------cccceeeccCCCceEeecCceEEcCceEE
Confidence 3577999999776543 344569999999999999999876542 23555555555444433322 22355
Q ss_pred EEEcCC--CCCceEEEEeCCHHHHHHHHHHHHHHHhhC
Q 002837 92 VLFPDG--RDGRAFTLKAETSEDLYEWKTALELALAQA 127 (875)
Q Consensus 92 iIt~~~--~~gRty~LqAdTeeE~~eWv~AI~~al~~a 127 (875)
++.... ...+...|.|-|.+|...|+.||+.|+.+.
T Consensus 75 vl~~Yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~q~ 112 (719)
T PLN00188 75 VLSVYNKKEKYHRITMAAFNIQEALIWKEKIESVIDQH 112 (719)
T ss_pred EEEEecCCCccccEEEecCCHHHHHHHHHHHHHHHhhh
Confidence 555422 345789999999999999999999999864
No 108
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.48 E-value=0.0008 Score=64.10 Aligned_cols=102 Identities=20% Similarity=0.258 Sum_probs=67.0
Q ss_pred CceEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCC-C--Cce----eeeeeCceEeCCCcceeeccCCce
Q 002837 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQ-R--GGE----VNLTLGGIDLNNSGSVVVREDKKL 89 (875)
Q Consensus 17 ~~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~-~--~~e----~~i~Lg~I~L~~~~sV~~~~~Kk~ 89 (875)
+..+++|-|- +-+...+.++.|+|.|-++.|+|.|........ | ++. ..+.+..+.|..... .+.-++
T Consensus 2 ~elI~EG~L~--ki~~~~~~~q~R~~FLFd~~Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~~d---~~~~kn 76 (112)
T cd01261 2 NEFIMEGTLT--RVGPSKKAKHERHVFLFDGLMVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDKPD---SSEYKN 76 (112)
T ss_pred ccccccCcEE--EEecccCCcceEEEEEecCeEEEEEeccCcccccccccceEEEEEEEeeeeeEEEEcCC---CcccCc
Confidence 3468899554 444345678999999999999999965542111 1 111 123444455543221 122356
Q ss_pred eEEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002837 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (875)
Q Consensus 90 ~fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~ 125 (875)
.|.|... +++.|.|+|.|+++..+|+++|..++.
T Consensus 77 aF~I~~~--~~~s~~l~Akt~eeK~~Wm~~l~~~~~ 110 (112)
T cd01261 77 AFEIILK--DGNSVIFSAKNAEEKNNWMAALISVQT 110 (112)
T ss_pred eEEEEcC--CCCEEEEEECCHHHHHHHHHHHHHHhc
Confidence 6777643 257899999999999999999998875
No 109
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.39 E-value=0.00044 Score=65.55 Aligned_cols=90 Identities=17% Similarity=0.228 Sum_probs=60.9
Q ss_pred EEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeec-------cCCceeEE
Q 002837 20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR-------EDKKLLTV 92 (875)
Q Consensus 20 ~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~-------~~Kk~~fi 92 (875)
+||||+- --...-+.|||+|++|....|.+|+++...+ ..+.|.|..+.+|... ....+||.
T Consensus 1 lkEGWmV--HyT~~d~~rKRhYWrLDsK~Itlf~~e~~sk---------yyKeIPLsEIl~V~~~~~~~~~~~~~~hcFE 69 (117)
T cd01239 1 LKEGWMV--HYTSSDNRRKKHYWRLDSKAITLYQEESGSR---------YYKEIPLAEILSVSSNNGDSVLAKHPPHCFE 69 (117)
T ss_pred CccceEE--EEecCccceeeeEEEecCCeEEEEEcCCCCe---------eeEEeehHHheEEeccCCCcCCCCCCCcEEE
Confidence 4799773 1111236799999999999999999988764 3444555554444221 34567998
Q ss_pred EEcCCCCCceEEEEeCC--------------------HHHHHHHHHHHHHH
Q 002837 93 LFPDGRDGRAFTLKAET--------------------SEDLYEWKTALELA 123 (875)
Q Consensus 93 It~~~~~gRty~LqAdT--------------------eeE~~eWv~AI~~a 123 (875)
|.+. ..+||++.+. ....+-|-.||+.|
T Consensus 70 i~T~---~~vY~VG~~~~~~~~~~~~~~~~~~~sg~g~~~a~~We~aI~qA 117 (117)
T cd01239 70 IRTT---TNVYFVGGEDYHAFSGGPPKKIPPSDSGRGSDNAQSWETAIRQA 117 (117)
T ss_pred EEec---CEEEEecccccccCCCcccCCCCcccccchhHHHHHHHHHHhcC
Confidence 8754 3899997752 34568899999864
No 110
>KOG0932 consensus Guanine nucleotide exchange factor EFA6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.38 E-value=8.4e-05 Score=85.42 Aligned_cols=102 Identities=27% Similarity=0.335 Sum_probs=68.8
Q ss_pred CCCCceEEEeeeeee-------cc-CCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcce----
Q 002837 14 GASNTVFKSGPLFIS-------SK-GIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSV---- 81 (875)
Q Consensus 14 ~~s~~V~KeG~L~l~-------Kk-G~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV---- 81 (875)
.++..+.|.|+|-.+ || -.+++.||..|.||+|-.|||-|++-.... .+..-+|.++.+|
T Consensus 501 dpsa~~Yk~G~L~RK~had~DgkKTPrGkRgWk~fya~LkG~vLYlqkDey~p~k--------alse~~lknavsvHHAL 572 (774)
T KOG0932|consen 501 DPSAATYKSGFLARKYHADMDGKKTPRGKRGWKMFYAVLKGMVLYLQKDEYKPGK--------ALSESDLKNAVSVHHAL 572 (774)
T ss_pred CCCchhhhhhhhhhhhhccccCCcCCccchhHHHHHHHHhhheEEeeccccCccc--------chhhhhhhhhhhhhhhh
Confidence 556678999977633 11 123677999999999999999997643321 1222223322221
Q ss_pred ----eeccCCceeEEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002837 82 ----VVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (875)
Q Consensus 82 ----~~~~~Kk~~fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~ 125 (875)
....+|.+.|.+. ..+.|.|+|||.+.++|+.||..|+-|..
T Consensus 573 At~AtdY~KKp~Vf~lr--tAdwrv~LFQaps~eEmqsWi~rIN~vAA 618 (774)
T KOG0932|consen 573 ATPATDYSKKPHVFKLR--TADWRVFLFQAPSQEEMQSWIERINLVAA 618 (774)
T ss_pred cCCCcccccCCceEEEE--eccceeEEEeCCCHHHHHHHHHHHHHHHH
Confidence 1124555666654 46789999999999999999999998764
No 111
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=97.33 E-value=0.00057 Score=79.93 Aligned_cols=101 Identities=21% Similarity=0.282 Sum_probs=62.1
Q ss_pred CCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecC-CCCCCCCCCceeeeeeCceEeCCCcceee--ccCCceeEE
Q 002837 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKN-DPSALPQRGGEVNLTLGGIDLNNSGSVVV--REDKKLLTV 92 (875)
Q Consensus 16 s~~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd-~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~--~~~Kk~~fi 92 (875)
...+.+.|||+ +.+... .|++|||.+.++.+..... .+........ .+...++..+..|.. ...+.++|.
T Consensus 374 ~sDv~~~G~l~--k~~~~~-~wk~ry~~l~~~~l~~~~~~~~~~~~~~~~----~~~l~~~~~v~pv~~~~~~~~~~~~~ 446 (478)
T PTZ00267 374 TSDVTHGGYLY--KYSSDM-RWKKRYFYIGNGQLRISLSENPENDGVAPK----SVNLETVNDVFPVPEVYSQKHPNQLV 446 (478)
T ss_pred cCCcccceEEe--ccCCCc-chhhheEEecCCceEEEeccccccCCCCCc----cccHHHhcccccccHHhcCCCCceEE
Confidence 45678999776 444434 4999999999876555432 2221111101 111122222222211 224567787
Q ss_pred EEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002837 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (875)
Q Consensus 93 It~~~~~gRty~LqAdTeeE~~eWv~AI~~al~ 125 (875)
+.. ..|+.++|.|++++++++|+.+|+.++.
T Consensus 447 i~~--~~~~~~~~~~~~~~~~~~W~~~~~~~~~ 477 (478)
T PTZ00267 447 LWF--NNGQKIIAYAKTAEDRDQWISKFQRACG 477 (478)
T ss_pred EEe--cCCcEEEEecCChHHHHHHHHHHHHHhC
Confidence 754 4578999999999999999999999873
No 112
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=97.32 E-value=0.00012 Score=89.95 Aligned_cols=100 Identities=20% Similarity=0.342 Sum_probs=72.4
Q ss_pred CceEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEEEEcC
Q 002837 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPD 96 (875)
Q Consensus 17 ~~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiIt~~ 96 (875)
..+...|+||++. +...+.|+||||-..++.+.|+........ .+..+|..|.+..+.. ..++++||.|+..
T Consensus 272 ~~~~~~~~l~~k~-~~~~~tw~r~~f~~q~~~l~~~~r~~~~~~----~~~~dL~~csvk~~~~---~~drr~CF~iiS~ 343 (785)
T KOG0521|consen 272 LGYRMEGYLRKKA-SNASKTWKRRWFSIQDGQLGYQHRGADAEN----VLIEDLRTCSVKPDAE---QRDRRFCFEIISP 343 (785)
T ss_pred chhhhhhhhhhhc-ccchhhHHhhhhhhhccccccccccccccc----cccccchhccccCCcc---cccceeeEEEecC
Confidence 3456667666332 335899999999999999999987766531 2334555555554332 2378899987653
Q ss_pred CCCCceEEEEeCCHHHHHHHHHHHHHHHhhC
Q 002837 97 GRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (875)
Q Consensus 97 ~~~gRty~LqAdTeeE~~eWv~AI~~al~~a 127 (875)
.++|.|||+++.+...||.+|++.+..+
T Consensus 344 ---tks~~lQAes~~d~~~Wi~~i~nsi~s~ 371 (785)
T KOG0521|consen 344 ---TKSYLLQAESEKDCQDWISALQNSILSA 371 (785)
T ss_pred ---CcceEEecCchhHHHHHHHHHHHHHHHH
Confidence 3899999999999999999999998643
No 113
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.25 E-value=0.0011 Score=62.58 Aligned_cols=99 Identities=18% Similarity=0.256 Sum_probs=62.9
Q ss_pred Eeeeeeecc--CCCCCCcEEEEEEEeCCeeeEecCCCCCCC-CCCceeeeeeC--ceEeCCCcc-eeeccCCceeEEEEc
Q 002837 22 SGPLFISSK--GIGWKSWKKRWFILTRTSLVFFKNDPSALP-QRGGEVNLTLG--GIDLNNSGS-VVVREDKKLLTVLFP 95 (875)
Q Consensus 22 eG~L~l~Kk--G~~~ksWKKRWFVL~~~~L~YYKd~~~~~p-~~~~e~~i~Lg--~I~L~~~~s-V~~~~~Kk~~fiIt~ 95 (875)
-|||.-+-. +...+.|+.+|++|++..|++|+..+.... -..+..+.+|. ...+..... ......+.+||.+..
T Consensus 2 mGW~~E~~~~~~~~~~~wrP~F~aL~~~dl~ly~s~P~s~e~w~~p~~~y~L~~~atrvv~~~~~~~~~~~~~~~F~irt 81 (108)
T cd01258 2 IGWVNEQLSGDDESSQRWRPRFLALKGSEFLFFETPPLSVEDWSRPLYVYKLYDVATRLVKNSSTRRLNDQRDNCFLIRT 81 (108)
T ss_pred ceecccccCCCCccccccceEEEEEcCCcEEEEeCCCCCHHHHhChhhhChhHHhhhheeccCCccCcCCCCceEEEEEc
Confidence 486652222 224689999999999999999999876431 11122223333 111111111 000235667998875
Q ss_pred CCCCC-ceEEEEeCCHHHHHHHHHHHHH
Q 002837 96 DGRDG-RAFTLKAETSEDLYEWKTALEL 122 (875)
Q Consensus 96 ~~~~g-Rty~LqAdTeeE~~eWv~AI~~ 122 (875)
. .+ ..++|..++..|+..|..||..
T Consensus 82 g--~~vesh~fsVEt~~dL~~W~raiv~ 107 (108)
T cd01258 82 G--TQVENHYLRVETHRDLASWERALVR 107 (108)
T ss_pred C--CceeeEEEEecCHHHHHHHHHHHhc
Confidence 4 35 8999999999999999999863
No 114
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=96.48 E-value=0.038 Score=53.43 Aligned_cols=99 Identities=15% Similarity=0.208 Sum_probs=56.6
Q ss_pred eeeeeccCC---CCCCcEEEEEEEeC--CeeeEecCCCCCCCCC-CceeeeeeCceEeCCCcceeecc----CCceeEEE
Q 002837 24 PLFISSKGI---GWKSWKKRWFILTR--TSLVFFKNDPSALPQR-GGEVNLTLGGIDLNNSGSVVVRE----DKKLLTVL 93 (875)
Q Consensus 24 ~L~l~KkG~---~~ksWKKRWFVL~~--~~L~YYKd~~~~~p~~-~~e~~i~Lg~I~L~~~~sV~~~~----~Kk~~fiI 93 (875)
|||+..+++ .....++|||.|.. .+|+|...++...... +..-.+.+..+.--......+.. +..++|+|
T Consensus 14 ~l~Ky~r~~~~~~~~~~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~~~~~~~~~~~~~~si~i 93 (123)
T PF12814_consen 14 WLYKYTRKGRSGISEKPHRRYFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVTEVKDGNPSPPGLKKPDHNKSIII 93 (123)
T ss_pred EEEEEcccccCccCCCcEEEEEEEeCCCCEEEecCCCCCccccccccccceEEeeeEEecCCCCCCccccccccceEEEE
Confidence 677543332 24578999999998 4677776544322111 11112333332221111111111 12334554
Q ss_pred EcCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002837 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (875)
Q Consensus 94 t~~~~~gRty~LqAdTeeE~~eWv~AI~~al~ 125 (875)
.. .+|++-|.|.|.++.+-|+.+|+..++
T Consensus 94 ~t---~~R~L~l~a~s~~~~~~W~~aL~~L~~ 122 (123)
T PF12814_consen 94 VT---PDRSLDLTAPSRERHEIWFNALRYLLQ 122 (123)
T ss_pred Ec---CCeEEEEEeCCHHHHHHHHHHHHHHhh
Confidence 43 359999999999999999999998764
No 115
>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms]
Probab=96.40 E-value=0.0015 Score=82.15 Aligned_cols=161 Identities=15% Similarity=0.230 Sum_probs=124.9
Q ss_pred ccccchHHH---hhhcCCCcHHHHH-HHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcCCC---CC----CCCCCcch
Q 002837 165 VVGRPILLA---LEDIDGGPSFLEK-ALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT---EF----SADEDAHV 233 (875)
Q Consensus 165 VFGvpL~~l---l~~~~~VP~iL~~-~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G~~---~~----~~~~D~h~ 233 (875)
++|+++..+ .......|.++.. |.......|....|+||..+....+...+..++.... .+ ....++..
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~vs~~~~~e~~~~g~~s~~l~r~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~ 541 (918)
T KOG1453|consen 462 ILGTDLTTLSVNKDLNSNRPLSVSRSLERESRSPGALSRGLFRVSGFSSTIESKKNAFDRKGQSKKDASPNVHKSKEVNL 541 (918)
T ss_pred ccccCccccccchhhhcccCcccccchhcccCCCCcccccccccCCccccccchhhccCccccchhccCCCccccccchh
Confidence 788888666 2234457888888 7777778899999999999998888888888876431 11 11345667
Q ss_pred hhhhhhhhhccC--CCCCCChhhHHHHH----------------HHHhcCCHHHHH-------HHHHHHHHh----hCCh
Q 002837 234 IGDCVKHVLREL--PSSPVPASCCTALL----------------EAYKIDRKEARI-------SAMRSAILE----TFPE 284 (875)
Q Consensus 234 VAslLK~fLReL--PePLLp~~ly~~~i----------------~~~~~~~~eeri-------~~l~~lLl~----~LP~ 284 (875)
+.+.++.|+|.+ |.+....+.|..++ .........+++ ..+.. +.. .+|.
T Consensus 542 ~sg~~~~~~r~~~~P~~c~~c~~~~~~~~~~c~~c~~~chkkc~~~~~~~~~~~~l~~~~~fG~~l~~-~~~~e~~~vP~ 620 (918)
T KOG1453|consen 542 HSGALKHYLRSLRKPAPCRTCETYSWFMELECELCRLVCHKKCLEALKSLCGHERLPGRPLFGVSLSE-LARYEPSTVPF 620 (918)
T ss_pred ccCcchhhhhcccCCcccccccccchhhhcccceeeeeccccchhhccccCccccccccccccHHHHH-hhccCCCCCCH
Confidence 778999999999 99988888888887 333344445555 56665 556 8999
Q ss_pred hHHHHHHHHHHHHHHHhcCcCCC-CCCc-cchhhhccc----cccCCC
Q 002837 285 PNRRLLQRILRMMHTISSHAHEN-RMTP-SAVAACMAP----LLLRPL 326 (875)
Q Consensus 285 ~N~~lL~~Ll~~L~~Va~~s~~N-KMta-~NLAi~FaP----~LLrp~ 326 (875)
....+|.++..++.+|.....+| -|+. .||..+|++ +++...
T Consensus 621 i~~~c~~~ie~~~lr~eGiYRksG~~~~~e~l~~~~e~~~~~v~l~~~ 668 (918)
T KOG1453|consen 621 ILKKCLREIEAHLLRVEGIYRKSGSMNQVENLSAVFENGDALVLLSTP 668 (918)
T ss_pred HHHHHHHHHHHhhhhccceeeccccHHHHHHHHHHhcCCccceecCCC
Confidence 99999999999999999999888 8888 999999999 555543
No 116
>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]
Probab=96.34 E-value=0.0023 Score=75.48 Aligned_cols=96 Identities=18% Similarity=0.314 Sum_probs=64.5
Q ss_pred CceEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEEEEcC
Q 002837 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPD 96 (875)
Q Consensus 17 ~~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiIt~~ 96 (875)
....|.| |.++-+...+.|+|||||++.+++.||+.+.+....... .+++...+... .......|.+...
T Consensus 247 e~~ekSg--y~~~~~s~~k~lkrr~~v~k~gqi~~y~~~~~~~~~p~s-------~~d~~s~~~~~-~~~~s~~fqli~~ 316 (936)
T KOG0248|consen 247 ETMEKSG--YWTQLTSRIKSLKRRYVVFKNGQISFYRKHNNRDEEPAS-------KIDIRSVTKLE-QQGAAYAFQLITS 316 (936)
T ss_pred chhhccc--chhcchHHHHHHHhHheeeccceEEEEEcCCCccccccC-------cccccccceee-ccchhHHhhhhhh
Confidence 5567889 555666678899999999999999999988776533222 23333222111 1122222322222
Q ss_pred CCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002837 97 GRDGRAFTLKAETSEDLYEWKTALELALA 125 (875)
Q Consensus 97 ~~~gRty~LqAdTeeE~~eWv~AI~~al~ 125 (875)
..+|+|-++++--..+|+..|+.++.
T Consensus 317 ---t~~~~~~~~s~~lt~dw~~iL~~~iK 342 (936)
T KOG0248|consen 317 ---TDKMNFMTESERTTHDWVTILSAAIK 342 (936)
T ss_pred ---ceeEEEeccChhhhhhhHHHHHHHHH
Confidence 27899999999999999999998875
No 117
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.33 E-value=0.037 Score=51.57 Aligned_cols=93 Identities=18% Similarity=0.164 Sum_probs=60.8
Q ss_pred ceEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEEEEcCC
Q 002837 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDG 97 (875)
Q Consensus 18 ~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiIt~~~ 97 (875)
..+++|.|...+. =+-|++.|-...|.|.|...+.. .-.-.+.+..+.|.... ...++.|.|....
T Consensus 3 eLlleg~l~~~~~------~~eR~vFLFe~~ll~~K~~~~~y---~~K~~i~~~~l~i~e~~-----~~d~~~F~v~~~~ 68 (97)
T cd01222 3 DLLLEGRFREHGG------GKPRLLFLFQTMLLIAKPRGDKY---QFKAYIPCKNLMLVEHL-----PGEPLCFRVIPFD 68 (97)
T ss_pred ceeeeceEEeecC------CCceEEEEecccEEEEEecCCee---EEEEEEEecceEEecCC-----CCCCcEEEEEecC
Confidence 4678886653322 24599999999999988654432 01112333333333211 1236788887654
Q ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHH
Q 002837 98 RDGRAFTLKAETSEDLYEWKTALELAL 124 (875)
Q Consensus 98 ~~gRty~LqAdTeeE~~eWv~AI~~al 124 (875)
...+.|.|+|.|.++...|+++|+.++
T Consensus 69 ~p~~~~~l~A~s~e~K~~W~~~i~~~i 95 (97)
T cd01222 69 DPKGALQLTARNREEKRIWTQQLKRAM 95 (97)
T ss_pred CCceEEEEEecCHHHHHHHHHHHHHHh
Confidence 444799999999999999999999886
No 118
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=96.29 E-value=0.0056 Score=57.56 Aligned_cols=94 Identities=20% Similarity=0.297 Sum_probs=63.3
Q ss_pred ceEEEeeeeeeccCC-CCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCccee---eccCCceeEEE
Q 002837 18 TVFKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV---VREDKKLLTVL 93 (875)
Q Consensus 18 ~V~KeG~L~l~KkG~-~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~---~~~~Kk~~fiI 93 (875)
.++..| |+.|-|+ +...|.+|||-|-.+.|-+|....... ++ -|.+..+..|. ..-+...|..+
T Consensus 2 DcIvhG--yi~KLGGPFls~WQ~Ry~~LfPNRLE~~~~~~~~~----~e------Li~M~~i~~V~~e~~~iK~~~CI~i 69 (116)
T cd01240 2 DCIVHG--YIKKLGGPFLSQWQTRYFKLYPNRLELYGESEANK----PE------LITMDQIEDVSVEFQQIKEENCILL 69 (116)
T ss_pred ceEEee--ehhhhCCHHHHHHHHHHheeCcceeeecccccccC----Cc------EEEeehhhhcchhheeeccCceEEE
Confidence 578899 4446554 567799999999999999975544321 11 12233222222 11133346666
Q ss_pred EcCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002837 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (875)
Q Consensus 94 t~~~~~gRty~LqAdTeeE~~eWv~AI~~al~ 125 (875)
... ++..|+|.+++..++.+|..-|+.+..
T Consensus 70 k~k--~~~k~vlt~~d~i~l~qW~~elr~a~r 99 (116)
T cd01240 70 KIR--DEKKIVLTNSDEIELKQWKKELRDAHR 99 (116)
T ss_pred EEc--CCceEEEecCCcHHHHHHHHHHHHHHH
Confidence 554 378999999999999999999998875
No 119
>PF15408 PH_7: Pleckstrin homology domain
Probab=96.22 E-value=0.0018 Score=58.19 Aligned_cols=88 Identities=13% Similarity=0.154 Sum_probs=58.4
Q ss_pred EeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcc----eeecc-C---CceeEEE
Q 002837 22 SGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGS----VVVRE-D---KKLLTVL 93 (875)
Q Consensus 22 eG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~s----V~~~~-~---Kk~~fiI 93 (875)
+||||..++|. -+|||.+|++..|.+|.++... .|+.+.|....- +.-++ . .-..|-+
T Consensus 1 EGYLY~~E~~s----i~rRF~~L~~K~~~~~~~KGG~----------~L~sF~L~~s~~s~Pm~~~~~A~~N~Gi~A~G~ 66 (104)
T PF15408_consen 1 EGYLYRDEDSS----IQRRFVMLRSKQFNMYEDKGGQ----------YLCSFQLSSSVVSHPMVNFSQAVPNLGINAFGF 66 (104)
T ss_pred CCeEEEeccch----HHHHHHhhhhceeEEecccCCc----------eeeeeehhhhhhhcccccccccCCCCCeeEEEE
Confidence 69999888775 5789999999999999987654 233333322110 00000 1 1123322
Q ss_pred EcCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 002837 94 FPDGRDGRAFTLKAETSEDLYEWKTALELA 123 (875)
Q Consensus 94 t~~~~~gRty~LqAdTeeE~~eWv~AI~~a 123 (875)
.-.+.+++..-+.|++.+.|+.|++++++-
T Consensus 67 L~~~~~~~~~~~FA~S~~~~~~Wi~~mN~~ 96 (104)
T PF15408_consen 67 LMYSPSRRHVQCFASSKKVCQSWIQVMNSP 96 (104)
T ss_pred EEecCCcchhhhhhhHHHHHHHHHHHhcCh
Confidence 223567899999999999999999999753
No 120
>PLN02866 phospholipase D
Probab=96.17 E-value=0.038 Score=69.36 Aligned_cols=89 Identities=19% Similarity=0.349 Sum_probs=56.4
Q ss_pred CCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCc-eEeCCCcceee------ccCCceeEEEEcCCCCCceEEEEe
Q 002837 35 KSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGG-IDLNNSGSVVV------REDKKLLTVLFPDGRDGRAFTLKA 107 (875)
Q Consensus 35 ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~-I~L~~~~sV~~------~~~Kk~~fiIt~~~~~gRty~LqA 107 (875)
..|.||||||+.+.|.|.+++.+..+. ..+.++..- +.-.....+.. ...-++.|.|+.. .|.+.|.|
T Consensus 216 ~~w~k~w~v~k~~~l~~~~~p~~~~~~--~v~lfD~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~i~~~---~r~l~l~~ 290 (1068)
T PLN02866 216 DNWQKVWAVLKPGFLALLEDPFDAKPL--DIIVFDVLPASNGNGEGQISLAKEIKERNPLRFGFKVTCG---NRSIRLRT 290 (1068)
T ss_pred CchheeEEEEeccEEEEEecCCCCcee--EEEEEecccccccCCCcceeecccccccCCCcceEEEecC---ceEEEEEE
Confidence 469999999999999999877665411 111111000 00000111111 1233556777654 49999999
Q ss_pred CCHHHHHHHHHHHHHHHhhCC
Q 002837 108 ETSEDLYEWKTALELALAQAP 128 (875)
Q Consensus 108 dTeeE~~eWv~AI~~al~~aP 128 (875)
.+...+..|+.+|+.+..+.|
T Consensus 291 ~s~~~~~~w~~ai~~~~~~~~ 311 (1068)
T PLN02866 291 KSSAKVKDWVAAINDAGLRPP 311 (1068)
T ss_pred CCHHHHHHHHHHHHHHHhccC
Confidence 999999999999999976443
No 121
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=96.16 E-value=0.0014 Score=76.17 Aligned_cols=106 Identities=21% Similarity=0.324 Sum_probs=66.5
Q ss_pred CceEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeE-EEEc
Q 002837 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLT-VLFP 95 (875)
Q Consensus 17 ~~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~f-iIt~ 95 (875)
.+.-..||||.-.+. .||.||||||||-.-+-|-|--..-...+..+...+.|.|..++...........+.|| -+.
T Consensus 462 ~nmkhsgylyaig~n-vwkrwkkrffvlvqvsqytfamcsyrekkaepqel~qldgytvdytdp~pglqgg~~ffnavk- 539 (1218)
T KOG3543|consen 462 PNMKHSGYLYAIGRN-VWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELIQLDGYTVDYTDPSPGLQGGKHFFNAVK- 539 (1218)
T ss_pred CccccceeehhhhhH-HHHHhHhhEEEEEEhhhhhhHhhhhhhcccChHHHhhccCeeeccCCCCCccccchHHHHHhc-
Confidence 345567999966543 49999999999987543322211111112223445677777666533211123333333 332
Q ss_pred CCCCCceEEEEeCCHHHHHHHHHHHHHHHhhC
Q 002837 96 DGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (875)
Q Consensus 96 ~~~~gRty~LqAdTeeE~~eWv~AI~~al~~a 127 (875)
-|-+..|..+++.|+.-|++|+-.|..++
T Consensus 540 ---egdtvifasddeqdr~lwvqamyratgqs 568 (1218)
T KOG3543|consen 540 ---EGDTVIFASDDEQDRHLWVQAMYRATGQS 568 (1218)
T ss_pred ---cCceEEeccCchhhhhHHHHHHHHhhCCc
Confidence 36799999999999999999999998765
No 122
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.92 E-value=0.035 Score=50.78 Aligned_cols=86 Identities=22% Similarity=0.306 Sum_probs=55.0
Q ss_pred eEEEeeeeeeccCCCCCCcEEEEEEEeCC-eeeEecCCCCCCCCCCceeeeeeCceEeCC-CcceeeccCCceeEEEEcC
Q 002837 19 VFKSGPLFISSKGIGWKSWKKRWFILTRT-SLVFFKNDPSALPQRGGEVNLTLGGIDLNN-SGSVVVREDKKLLTVLFPD 96 (875)
Q Consensus 19 V~KeG~L~l~KkG~~~ksWKKRWFVL~~~-~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~-~~sV~~~~~Kk~~fiIt~~ 96 (875)
|++.|.++ |+.+. .+++|=++|++. .|+|+...... .-|.|.++. ...+..... +.|++.+|
T Consensus 1 Il~~g~v~--Kr~gl--f~kkR~LiLTd~PrL~yvdp~~~~----------~KgeIp~s~~~l~v~~~~~-~~F~I~Tp- 64 (89)
T cd01262 1 ILKIGAVK--KRKGL--FAKKRQLILTNGPRLIYVDPVKKV----------VKGEIPWSDVELRVEVKNS-SHFFVHTP- 64 (89)
T ss_pred Cceeeeee--ehhcc--ccceeeEEEecCceEEEEcCCcCe----------EEeEecccccceEEEEecC-ccEEEECC-
Confidence 46788555 44332 579999999986 45555443322 345577776 333333333 44555555
Q ss_pred CCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 002837 97 GRDGRAFTLKAETSEDLYEWKTALELAL 124 (875)
Q Consensus 97 ~~~gRty~LqAdTeeE~~eWv~AI~~al 124 (875)
+|+|+|. +-......|+.+|.++.
T Consensus 65 ---~rty~le-D~~~~a~~W~~~I~~~~ 88 (89)
T cd01262 65 ---NKVYSFE-DPKGRASQWKKAIEDLQ 88 (89)
T ss_pred ---CceEEEE-CCCCCHHHHHHHHHHHh
Confidence 4999995 55678999999998874
No 123
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=95.90 E-value=0.025 Score=66.83 Aligned_cols=38 Identities=13% Similarity=0.299 Sum_probs=32.5
Q ss_pred CCceeEEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002837 86 DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (875)
Q Consensus 86 ~Kk~~fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~ 125 (875)
..++.|.+.. .+|+.|.|+|.+.++++.||.+|+.++.
T Consensus 453 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (496)
T PTZ00283 453 NAAHVFAVAF--KTGRRLLFQARSDPERDAWMQKIQSVLG 490 (496)
T ss_pred CCCcEEEEEe--cCCcEEEEecCCchhHHHHHHHHHHhcC
Confidence 4567777764 4589999999999999999999999974
No 124
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=95.88 E-value=0.0043 Score=71.92 Aligned_cols=94 Identities=29% Similarity=0.432 Sum_probs=62.6
Q ss_pred EEEeeeeeeccC--CCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceee-c--cCCc---eeE
Q 002837 20 FKSGPLFISSKG--IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-R--EDKK---LLT 91 (875)
Q Consensus 20 ~KeG~L~l~KkG--~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~-~--~~Kk---~~f 91 (875)
+.+|-|- .||| ...+.|+.|||+|.+..|.|.|....... .-..|++..+.+|.. . ...+ -.|
T Consensus 736 ~iEGQLK-EKKGrWRf~kRW~TrYFTLSgA~L~~~kg~s~~dS--------~~~~IDl~~IRSVk~v~~kr~~rslpKAF 806 (851)
T KOG3723|consen 736 LIEGQLK-EKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKDDS--------DDCPIDLSKIRSVKAVAKKRRDRSLPKAF 806 (851)
T ss_pred hhcchhh-hhccchhhhhhhccceEEecchhhhcccCCCCCCC--------CCCCccHHHhhhHHHHHhhhhhcccchhh
Confidence 6677432 2333 24688999999999999999775433221 113467766666531 1 1111 256
Q ss_pred EEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002837 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (875)
Q Consensus 92 iIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~ 125 (875)
.|+..+ .+|.|.|.++.-.++|++.|+=|++
T Consensus 807 EIFTAD---~T~ILKaKDeKNAEEWlqCL~IavA 837 (851)
T KOG3723|consen 807 EIFTAD---KTYILKAKDEKNAEEWLQCLNIAVA 837 (851)
T ss_pred heeecC---ceEEeecccccCHHHHHHHHHHHHH
Confidence 665443 7899999999999999999998875
No 125
>KOG3531 consensus Rho guanine nucleotide exchange factor CDEP [Signal transduction mechanisms]
Probab=95.40 E-value=0.007 Score=72.96 Aligned_cols=84 Identities=20% Similarity=0.342 Sum_probs=63.4
Q ss_pred CCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEEEEcCCCCCceEEEEeCCHHHH
Q 002837 34 WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDL 113 (875)
Q Consensus 34 ~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiIt~~~~~gRty~LqAdTeeE~ 113 (875)
...|.|-|.|.+.-+|+|||+..+..+ -.+++|-|+.+..-.. .....|-+.|.+..+. .+|+|.|++.=..
T Consensus 937 ssgwqkLwvvft~fcl~fyKS~qD~~~----laslPlLgysvs~P~~-~d~i~K~~vfkl~fk~---hvyffraes~yt~ 1008 (1036)
T KOG3531|consen 937 SSGWQKLWVVFTNFCLFFYKSHQDSEP----LASLPLLGYSVSIPAE-PDPIQKDYVFKLKFKS---HVYFFRAESYYTF 1008 (1036)
T ss_pred cccceeeeeeecceeeEeecccccccc----cccccccccccCCCCC-CCCcchhheeeeehhh---hHHHHhhhhhhhh
Confidence 457999999999999999999988763 3345666666554222 1223566778887664 8999999999999
Q ss_pred HHHHHHHHHHHh
Q 002837 114 YEWKTALELALA 125 (875)
Q Consensus 114 ~eWv~AI~~al~ 125 (875)
+.|+..|+.+-.
T Consensus 1009 ~rw~evi~~a~~ 1020 (1036)
T KOG3531|consen 1009 ERWMEVITDAPS 1020 (1036)
T ss_pred hhHHHHhhcCCc
Confidence 999999987643
No 126
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.39 E-value=0.16 Score=49.39 Aligned_cols=97 Identities=18% Similarity=0.179 Sum_probs=57.8
Q ss_pred eEEEeeeeeec-cCC-----CCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeee----eeCceEeCCCcceee-----
Q 002837 19 VFKSGPLFISS-KGI-----GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNL----TLGGIDLNNSGSVVV----- 83 (875)
Q Consensus 19 V~KeG~L~l~K-kG~-----~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i----~Lg~I~L~~~~sV~~----- 83 (875)
.+|.|.|.... .+. .+..-+.+|+.|-.+.|.|-|.+. +..+.| +...+.+..+.....
T Consensus 3 LvK~GEL~~l~~~~~~~~~~~k~~~~~vylfLFnDlLl~tkkK~------~~~f~V~dy~~r~~l~V~~~e~~~~~~~~~ 76 (125)
T cd01221 3 LVKRGELTQLEERGSSNILRKKLKARTIYLFLFNDLLLITKKKL------GSTFVVFDYAPRSFLRVEKIEPDNQKIPLG 76 (125)
T ss_pred eEEEeeEEEEeccCCcchhcccccCCcEEEEEecceEEEEEecC------CCeEEEEeeccccceEEeeccccccccccc
Confidence 36788765332 221 123456789999999999988543 222222 334454443322100
Q ss_pred --ccCCceeEEEEc-CCCCC--ceEEEEeCCHHHHHHHHHHHH
Q 002837 84 --REDKKLLTVLFP-DGRDG--RAFTLKAETSEDLYEWKTALE 121 (875)
Q Consensus 84 --~~~Kk~~fiIt~-~~~~g--Rty~LqAdTeeE~~eWv~AI~ 121 (875)
....++.|.++. .+..| +.+.|+|+|+.|+.+||.||.
T Consensus 77 ~~~~~~~~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al~ 119 (125)
T cd01221 77 SNLVGRPNLFLLTLLRNADDKQAELLLSADSQSDRERWLSALA 119 (125)
T ss_pred ccccCCCceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhcC
Confidence 013456676653 33334 569999999999999999983
No 127
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=94.89 E-value=0.037 Score=63.59 Aligned_cols=94 Identities=20% Similarity=0.351 Sum_probs=60.8
Q ss_pred eEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEEEEcCCC
Q 002837 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGR 98 (875)
Q Consensus 19 V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiIt~~~~ 98 (875)
+-..| ++.+.......|.-|||+|..+.|.||++..... .|. .|.|.+..+.--.-..+-.-|++.+ .
T Consensus 24 ~e~~G--~lskwtnyi~gwqdRyv~lk~g~Lsyykse~E~~--hGc-----Rgsi~l~ka~i~ahEfDe~rfdIsv-n-- 91 (611)
T KOG1739|consen 24 VERCG--VLSKWTNYIHGWQDRYVVLKNGALSYYKSEDETE--HGC-----RGSICLSKAVITAHEFDECRFDISV-N-- 91 (611)
T ss_pred hhhcc--eeeeeecccccccceEEEEcccchhhhhhhhhhh--ccc-----ceeeEeccCCcccccchhheeeeEe-c--
Confidence 34444 3335444566899999999999999999988764 222 2335554422110112222234433 2
Q ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002837 99 DGRAFTLKAETSEDLYEWKTALELALA 125 (875)
Q Consensus 99 ~gRty~LqAdTeeE~~eWv~AI~~al~ 125 (875)
-...++.|.+....+.|+++|.-.-.
T Consensus 92 -~nv~~lra~~~~hr~~w~d~L~wmk~ 117 (611)
T KOG1739|consen 92 -DNVWYLRAQDPDHRQQWIDALEWMKT 117 (611)
T ss_pred -cceeeehhcCcHHHHHHHHHHHHHhh
Confidence 37899999999999999999987654
No 128
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.86 E-value=0.31 Score=46.42 Aligned_cols=100 Identities=16% Similarity=0.207 Sum_probs=58.7
Q ss_pred eEEEeeeeeeccCCCCCCc-EEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceee---ccCCceeEEEE
Q 002837 19 VFKSGPLFISSKGIGWKSW-KKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV---REDKKLLTVLF 94 (875)
Q Consensus 19 V~KeG~L~l~KkG~~~ksW-KKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~---~~~Kk~~fiIt 94 (875)
.+.+|=|.+... .+.| +.|+|.|-++.|+|.|.+.-....-.-...+.+..+.+.+...-.. ...-++.|.|.
T Consensus 2 li~~Gel~~~s~---~~g~~q~R~~FLFD~~LI~CKkd~~r~~~~~yKgri~l~~~~I~d~~Dg~~~~~~~~~knafkl~ 78 (109)
T cd01224 2 LFLQGEATRQKQ---NKGWNSSRVLFLFDHQMVLCKKDLIRRDHLYYKGRIDLDRCEVVNIRDGKMFSSGHTIKNSLKIY 78 (109)
T ss_pred ceEeeeEEEEec---ccCCcccEEEEEecceEEEEecccccCCcEEEEEEEEcccEEEEECCCCccccCCceeEEEEEEE
Confidence 467785543332 1123 5799999999999999653221111112234444555544322000 01124567776
Q ss_pred cCCCCCceEEEEeCCHHHHHHHHHHHHH
Q 002837 95 PDGRDGRAFTLKAETSEDLYEWKTALEL 122 (875)
Q Consensus 95 ~~~~~gRty~LqAdTeeE~~eWv~AI~~ 122 (875)
.. ..+..|.|+|.|+++-..|++||..
T Consensus 79 ~~-~~~~~~~f~~Kt~e~K~~Wm~a~~~ 105 (109)
T cd01224 79 SE-STDEWYLFSFKSAERKHRWLSAFAL 105 (109)
T ss_pred Ec-CCCeEEEEEECCHHHHHHHHHHHHH
Confidence 43 3357799999999999999999964
No 129
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=94.60 E-value=0.046 Score=64.19 Aligned_cols=104 Identities=21% Similarity=0.245 Sum_probs=69.4
Q ss_pred CCCCCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcc-eeeccCCceeE
Q 002837 13 PGASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGS-VVVREDKKLLT 91 (875)
Q Consensus 13 ~~~s~~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~s-V~~~~~Kk~~f 91 (875)
..+++.++|+|.|+ |......+-..||++|-+..|.|.+... ..+...-++.. .+++..... ........+.|
T Consensus 266 V~PsreLiKEG~l~--Kis~k~~~~qeRylfLFNd~~lyc~~r~-~~~~~k~~~r~---~~s~~~~~v~~~~~~~~~~tF 339 (623)
T KOG4424|consen 266 VSPSRELIKEGQLQ--KISAKNGTTQERYLFLFNDILLYCKPRK-RLPGSKYEVRA---RCSISHMQVQEDDNEELPHTF 339 (623)
T ss_pred cCcHHHHhhcccee--eeeccCCCcceeEEEEehhHHHhhhhhh-hcccceeccce---eeccCcchhcccccccCCceE
Confidence 35677899999776 5555556789999999999998888665 22211111111 122221111 11223445678
Q ss_pred EEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002837 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (875)
Q Consensus 92 iIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~ 125 (875)
+++-. .|..-|+|.|+++-++|+++|+.++.
T Consensus 340 ~~~G~---~r~vel~a~t~~ek~eWv~~I~~~Id 370 (623)
T KOG4424|consen 340 ILTGK---KRGVELQARTEQEKKEWVQAIQDAID 370 (623)
T ss_pred EEecc---cceEEeecCchhhHHHHHHHHHHHHH
Confidence 88743 48999999999999999999999986
No 130
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=93.37 E-value=1.5 Score=42.11 Aligned_cols=84 Identities=21% Similarity=0.279 Sum_probs=53.0
Q ss_pred CcEEEEEEEeCCeeeEecCCCCCCCCCCce-----eeeeeCceEeCCCcceeeccCCceeEEEEcCCCC--CceEEEEeC
Q 002837 36 SWKKRWFILTRTSLVFFKNDPSALPQRGGE-----VNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRD--GRAFTLKAE 108 (875)
Q Consensus 36 sWKKRWFVL~~~~L~YYKd~~~~~p~~~~e-----~~i~Lg~I~L~~~~sV~~~~~Kk~~fiIt~~~~~--gRty~LqAd 108 (875)
.=+.|-+.|-...|+|-|...... ..+.. -.+.+..+.+... .++....|.+....+. ...|.+||.
T Consensus 23 K~~eR~vFLFe~~lvfsk~~~~~~-~~~~~~Y~yK~~ikls~l~l~e~-----v~gd~~kF~i~~~~~~~~~~~~ilqA~ 96 (114)
T cd01232 23 KGRERRVFLFEQSIIFAKEVKKKK-QFGNPKYIYKSKLQVSKMGLTEH-----VEGDPCRFALWSGDPPISDNRIILKAN 96 (114)
T ss_pred CCceeEEEEeeceEEEEEEeccCC-CCCceeEEEecceeeeeeEeEEc-----cCCCCceEEEEeCCCCCCceEEEEECC
Confidence 346777888888888888654321 11111 1223333333321 1233455777655443 479999999
Q ss_pred CHHHHHHHHHHHHHHHh
Q 002837 109 TSEDLYEWKTALELALA 125 (875)
Q Consensus 109 TeeE~~eWv~AI~~al~ 125 (875)
|.++.+.|+..|+.++.
T Consensus 97 s~e~K~~W~~~I~~il~ 113 (114)
T cd01232 97 SQETKQEWVKKIREILQ 113 (114)
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 99999999999999874
No 131
>PF15406 PH_6: Pleckstrin homology domain
Probab=93.23 E-value=0.18 Score=47.74 Aligned_cols=70 Identities=20% Similarity=0.355 Sum_probs=47.9
Q ss_pred EEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEEEEcCCCCCceEEEEeCCHHHHHHHHH
Q 002837 39 KRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKT 118 (875)
Q Consensus 39 KRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiIt~~~~~gRty~LqAdTeeE~~eWv~ 118 (875)
--|-.-+|.-|.||....+... +-|.|.|..+..+......+|.|.+ .|...+|+|.+..|++.||.
T Consensus 41 ~AwAsqTGKGLLF~~K~~dka~--------P~GiinLadase~~~~g~~kF~f~~-----~G~khtF~A~s~aERD~Wv~ 107 (112)
T PF15406_consen 41 AAWASQTGKGLLFFSKAEDKAS--------PSGIINLADASEPEKDGSNKFHFKI-----KGHKHTFEAASAAERDNWVA 107 (112)
T ss_pred hhhhhccCceEEEEeccccccC--------CcceEehhhccccccCCCceEEEEe-----CCceeeeecCCHHHhccHHH
Confidence 3566667766666653333321 4556888877766555555554444 36999999999999999999
Q ss_pred HHH
Q 002837 119 ALE 121 (875)
Q Consensus 119 AI~ 121 (875)
+|.
T Consensus 108 ~lk 110 (112)
T PF15406_consen 108 QLK 110 (112)
T ss_pred Hhh
Confidence 986
No 132
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.75 E-value=0.78 Score=52.83 Aligned_cols=109 Identities=20% Similarity=0.274 Sum_probs=80.3
Q ss_pred hHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 002837 585 QRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGM 664 (875)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~l 664 (875)
..||+.|..+..+|. ||+.=+..|..++.+|+....+-.+|.--|++++++|++|+++...|-..+.--.+. +
T Consensus 347 sqlen~k~~~e~~~~-e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~k------l 419 (493)
T KOG0804|consen 347 SQLENQKQYYELLIT-EADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGK------L 419 (493)
T ss_pred HHHHhHHHHHHHHHH-HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH------H
Confidence 478888888887775 677778888999999999999999999999999999999999999988765422221 1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 665 DSKTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (875)
Q Consensus 665 p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~ 700 (875)
-..-..+=+.+-..++.|..|++||.+|-+.|--|.
T Consensus 420 ~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le~qq 455 (493)
T KOG0804|consen 420 KELEEREKEALGSKDEKITDLQEQLRDLMFFLEAQQ 455 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHheehhhhh
Confidence 122222333455667777777777777776665443
No 133
>KOG1449 consensus Predicted Rho GTPase-activating protein CdGAPr [Signal transduction mechanisms]
Probab=92.69 E-value=0.025 Score=66.13 Aligned_cols=74 Identities=20% Similarity=0.240 Sum_probs=51.4
Q ss_pred HHHHHHHhcCcCCCCCCccchhhhccccccCCCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 002837 294 LRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFD 373 (875)
Q Consensus 294 l~~L~~Va~~s~~NKMta~NLAi~FaP~LLrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~ 373 (875)
+.||..|+.++....|.+.|||+||+|+|+|.+.......+. .-|+ +|........-+++|++.|-+.||.
T Consensus 1 ~rHls~va~~~s~tnmhA~Nla~vwapnllrskeies~lcs~---~~Gd------aAf~avq~qsvV~EfilnhvDvlF~ 71 (670)
T KOG1449|consen 1 HRHLSSVALGPSRTNMHAINLAEVWAPNLLRSKEIESSLCSH---LWGD------AAFSAVQAQSVVSEFILNHVDVLFL 71 (670)
T ss_pred CcchhhhhccchhhHHHHhhHHHhhhhhhHHHHHHHHhhhcc---cccc------HHHHHHHhhhhhhhhcccccceecC
Confidence 358899999999999999999999999999976321111110 1122 1223333344678999999999998
Q ss_pred Ccc
Q 002837 374 DES 376 (875)
Q Consensus 374 ~~~ 376 (875)
.-.
T Consensus 72 ~~a 74 (670)
T KOG1449|consen 72 PTA 74 (670)
T ss_pred CcC
Confidence 654
No 134
>KOG1449 consensus Predicted Rho GTPase-activating protein CdGAPr [Signal transduction mechanisms]
Probab=92.29 E-value=0.038 Score=64.66 Aligned_cols=176 Identities=19% Similarity=0.169 Sum_probs=111.2
Q ss_pred CcccccchHHHhh-hcCCCcH-HHHHHHHHHHh---cC--CcccCccccCCCHHHHHHHHHHHhcCCCCCCCCCCcchhh
Q 002837 163 SLVVGRPILLALE-DIDGGPS-FLEKALRFLEK---FG--TKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIG 235 (875)
Q Consensus 163 ~~VFGvpL~~ll~-~~~~VP~-iL~~~i~~Le~---~G--l~~EGIFRisG~~~~V~~L~~~ld~G~~~~~~~~D~h~VA 235 (875)
...||.-|..+.- -+++||. ++.+||..+.. ++ +...|+|++..+.... .+...+....|+.++.
T Consensus 207 ~~~~gl~ltr~~~~~G~~lpas~~g~~C~s~~~~~q~~ei~~~~g~l~a~~D~gae--------~d~~af~~p~di~v~S 278 (670)
T KOG1449|consen 207 NLNCGLVLTRMEVGLGRGLPASEWGRGCVSHHAVTQHREILDGNGVLSAVEDEGAE--------VDGEAFRWPSDIVVES 278 (670)
T ss_pred CccccceecceeeccccccchhhhccchhccccchhccCCcccCcceecccccccc--------ccccccCCccceeeec
Confidence 3455555533332 2567888 78888877765 22 4455677765543221 2234555678999999
Q ss_pred hhhhhhhccCCCCCCChhhHHHHHHHHhcC-CHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCCCCccch
Q 002837 236 DCVKHVLRELPSSPVPASCCTALLEAYKID-RKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAV 314 (875)
Q Consensus 236 slLK~fLReLPePLLp~~ly~~~i~~~~~~-~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NL 314 (875)
-+++-|.+.+|.|+.. . ++... ...+.+..++ +.....++.|+.+-.+|..||...+.-. .++
T Consensus 279 ~d~dp~s~Q~~pp~~~-~-------~~~k~Ds~s~sv~~~~-~~~~~~se~~~r~a~~lse~ft~~~~~~-------~s~ 342 (670)
T KOG1449|consen 279 WDMDPYSRQLPPPYPK-E-------AFEKEDSLSESVESLR-FSLETMSEAHYRTAKFLSEHFTRLCKSK-------KSL 342 (670)
T ss_pred cccChhhhhcCCCCcc-c-------ccccccCcccceeeec-cccccCCcccchHhhhhchhhhhhcccc-------ccc
Confidence 9999999999999543 2 22222 2233444444 3556899999999999999998887643 899
Q ss_pred hhhccccccCCCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCcc
Q 002837 315 AACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (875)
Q Consensus 315 Ai~FaP~LLrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~~~ 376 (875)
+|++.|+++|++. .++. ++..+- ...+....++.+.|++....|..+.
T Consensus 343 ~I~~~~~~~r~pp----tL~~-~~~h~~---------~~~~~~~~~~~~~~e~s~~~~~~~i 390 (670)
T KOG1449|consen 343 AIVWSPNLFRPPP----TLNG-ADTHLL---------SGLNVHTAICDFFIENSESLFVNDI 390 (670)
T ss_pred eeecCCCCCCCCC----CCCc-hhhhhc---------ccCCcceeecccchhhhhhhhhccc
Confidence 9999999999884 2322 111100 0111223456677777777766654
No 135
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=91.84 E-value=0.65 Score=43.11 Aligned_cols=89 Identities=17% Similarity=0.256 Sum_probs=56.1
Q ss_pred eEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCC---CCCCceeeeeeCceEeCCCcceeeccCCceeEEEEc
Q 002837 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSAL---PQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFP 95 (875)
Q Consensus 19 V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~---p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiIt~ 95 (875)
.+++|+|..--+| .=|.|=|.|-++.|+|-+-..... .+....-.|+|..+.+.... |.+.
T Consensus 3 Lv~eg~lvel~~~----~rK~R~~FLFnDlLvc~~ik~~~~~k~~kY~~~w~IPL~dl~~~~~~-----------~~~~- 66 (96)
T cd01228 3 LVKDSFLVELVEG----SRKLRHLFLFTDVLLCAKLKKTSRGKHQQYDCKWYIPLADLSFPSEP-----------FRIH- 66 (96)
T ss_pred ccccceeeeehhC----CCcceEEEeeccEEEEEEeeeccCccccccceeEEEEhHHheecchh-----------hhcc-
Confidence 5788977644333 347788889999888877542111 11111123455544443321 2222
Q ss_pred CCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 002837 96 DGRDGRAFTLKAETSEDLYEWKTALELAL 124 (875)
Q Consensus 96 ~~~~gRty~LqAdTeeE~~eWv~AI~~al 124 (875)
.++++.|+|.|.|..|..+|+.+|++..
T Consensus 67 -~~~~KSf~~~asS~~Er~eW~~hI~~~~ 94 (96)
T cd01228 67 -NKNGKSYTFLLSSDYERSEWRESIQKLQ 94 (96)
T ss_pred -ccCCceEEEEecCHHHHHHHHHHHHHHh
Confidence 3468999999999999999999998753
No 136
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=91.32 E-value=1.1 Score=42.79 Aligned_cols=82 Identities=18% Similarity=0.196 Sum_probs=57.9
Q ss_pred CcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEEEEcCCCCCceEEEEeCCHHHHHH
Q 002837 36 SWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYE 115 (875)
Q Consensus 36 sWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiIt~~~~~gRty~LqAdTeeE~~e 115 (875)
.=..||++|-.+.|.+....+... ...-+..++|.++.++.... .+..++.|.|+ +..--...+.|.+++|+.+
T Consensus 27 e~~eRyLvLFp~~LlilS~s~r~s-Gf~yqGkLPL~~i~v~~lEd---~e~~~~aFeI~--G~li~~i~v~C~~~~e~~~ 100 (111)
T cd01225 27 EKRERYLVLFPNVLLMLSASPRMS-GFIYQGKLPLTGIIVTRLED---TEALKNAFEIS--GPLIERIVVVCNNPQDAQE 100 (111)
T ss_pred ccceeEEEEcCceEEEEEcCCCcc-ceEEeeeecccccEEechHh---ccCccceEEEe--ccCcCcEEEEeCCHHHHHH
Confidence 347899999999999998765432 01123446778887775332 23556778886 3344578888999999999
Q ss_pred HHHHHHHH
Q 002837 116 WKTALELA 123 (875)
Q Consensus 116 Wv~AI~~a 123 (875)
|+.-|+.-
T Consensus 101 Wl~hL~~~ 108 (111)
T cd01225 101 WVELLNAN 108 (111)
T ss_pred HHHHHHhh
Confidence 99999864
No 137
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=90.68 E-value=2.5 Score=46.10 Aligned_cols=125 Identities=20% Similarity=0.274 Sum_probs=69.8
Q ss_pred hHHHHHhHhhhhhHHHHHHHHHHhh-----hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 002837 579 EEELAIQRLEITKNDLRHRIAKEAR-----GNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSM 653 (875)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~ 653 (875)
+-...|+++-..+..|+.+|.+... .....+.. ......++++-..|++.+++++++++..+.--..+...+..
T Consensus 24 ~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~-~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~ 102 (302)
T PF10186_consen 24 ELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQL-KREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQ 102 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466788888888999999987665 22222211 22334455555667777777777777777766666666643
Q ss_pred CCCCCC----CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 002837 654 SSGQFS----SSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQHHY 704 (875)
Q Consensus 654 ~~~~~~----~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~~~~ 704 (875)
....+. .-........++..++...+..+..|++++..-+.++.++-..=+
T Consensus 103 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~~l~~~l~~if 157 (302)
T PF10186_consen 103 RRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRRRQLIQELSEIF 157 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 322222 001112233344445555555555555555555555555554433
No 138
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=90.38 E-value=7.2 Score=42.21 Aligned_cols=70 Identities=33% Similarity=0.376 Sum_probs=52.9
Q ss_pred HHHhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002837 582 LAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQAL---HERRLALEQDVSRLQEQLQAERDLRAALEVGL 651 (875)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~---~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al 651 (875)
.+||.|..-+..|.++|...-|.=..+|+-+++-+..+ ...-..|+++|.+++..|++.+.=..-++..|
T Consensus 10 ~~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 10 LAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999766666566666665544444 44455688999999999999888877777777
No 139
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.03 E-value=4.8 Score=47.98 Aligned_cols=102 Identities=21% Similarity=0.316 Sum_probs=74.5
Q ss_pred HHHHhHhhhhhHHHHHHHHHHhhhhhhhhhhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 002837 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLE------RRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMS 654 (875)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~------~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~ 654 (875)
+..--||+.-.+.+-..|+-=-+.|+.|=..+. .|.+.+++++..|+-||-++|.=+.+=...-.+++..
T Consensus 220 ~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~---- 295 (581)
T KOG0995|consen 220 DELKHRLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKK---- 295 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHH----
Confidence 334456666666666666555555555555443 3455789999999999999887666555555555554
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 655 SGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (875)
Q Consensus 655 ~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~ 699 (875)
...|=.||+..|+|+-.|.+++.+|+.++--|
T Consensus 296 -------------l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q 327 (581)
T KOG0995|consen 296 -------------LEMLKSEIEEKEEEIEKLQKENDELKKQIELQ 327 (581)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45888999999999999999999999999777
No 140
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=90.00 E-value=0.19 Score=61.32 Aligned_cols=95 Identities=23% Similarity=0.346 Sum_probs=66.5
Q ss_pred CCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEEEEc
Q 002837 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFP 95 (875)
Q Consensus 16 s~~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiIt~ 95 (875)
...+++.|||-+-.-+ +...+.|||.-+.+..+.||...++..+++ -|.+..++.| ...... .|.+..
T Consensus 84 isp~~~~gwldk~~pq-g~~~~qkr~vkf~~~s~~yf~~~k~py~k~---------~i~va~is~v-~~~gd~-kfevit 151 (1186)
T KOG1117|consen 84 ISPVIKSGWLDKLSPQ-GEYPFQKRWVKFDGSSLEYFLSPKDPYSKG---------PIPVAAISAV-RNFGDN-KFEVIT 151 (1186)
T ss_pred cCchhhcchhhccCcC-cccccCccceecCCCCccccCCCCCCCCCC---------ceeeehhhhh-hhccCc-eEEEEe
Confidence 3458999977633322 245689999999999999999999887443 2444433332 112222 244432
Q ss_pred CCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002837 96 DGRDGRAFTLKAETSEDLYEWKTALELALA 125 (875)
Q Consensus 96 ~~~~gRty~LqAdTeeE~~eWv~AI~~al~ 125 (875)
+.|+|.|.++.+.++..|+..+++++.
T Consensus 152 ---n~r~fvfr~e~~~~r~~w~s~l~s~~~ 178 (1186)
T KOG1117|consen 152 ---NQRTFVFRQESEGERFIWVSPLQSALK 178 (1186)
T ss_pred ---cceEEEEecCCcccceeeechhhhcch
Confidence 349999999999999999999999874
No 141
>KOG3549 consensus Syntrophins (type gamma) [Extracellular structures]
Probab=89.76 E-value=0.58 Score=52.15 Aligned_cols=107 Identities=17% Similarity=0.308 Sum_probs=70.0
Q ss_pred CCCCceEEEeeeeeeccC-CCCCCcEEEEEEEeCCeeeEecCCCCCCC-CCCceeeeeeCc--eEeCCCcceeeccCCce
Q 002837 14 GASNTVFKSGPLFISSKG-IGWKSWKKRWFILTRTSLVFFKNDPSALP-QRGGEVNLTLGG--IDLNNSGSVVVREDKKL 89 (875)
Q Consensus 14 ~~s~~V~KeG~L~l~KkG-~~~ksWKKRWFVL~~~~L~YYKd~~~~~p-~~~~e~~i~Lg~--I~L~~~~sV~~~~~Kk~ 89 (875)
.++..|+..||..-..++ ..+..++.||..|+|.++|.|..++-..- ....++...+.. +.+.... ...+.+++
T Consensus 276 ~v~~qivyMGWvne~~q~~~s~q~y~P~FLaLkG~~~y~F~tPPv~t~dw~rAe~ty~vye~mfki~Kds--d~~D~R~~ 353 (505)
T KOG3549|consen 276 AVGEQIVYMGWVNEGVQNNISWQSYKPRFLALKGTEVYLFETPPVNTADWSRAEVTYKVYETMFKIVKDS--DTVDSRQH 353 (505)
T ss_pred CccceEEEeeeccccccCcccccccCceeEEecCcEEEEEcCCCcchhhhhhhhhhHHHHHHHHHHhccc--cccccccc
Confidence 346678899965532223 34777899999999999999997764320 001111111111 1111111 12357888
Q ss_pred eEEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 002837 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (875)
Q Consensus 90 ~fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al 124 (875)
||.+.. ..|...||..+...|+..|-.+.+.|.
T Consensus 354 CF~~qs--~~ge~~yfsVEl~seLa~wE~sfq~At 386 (505)
T KOG3549|consen 354 CFLLQS--SGGEPRYFSVELRSELARWENSFQAAT 386 (505)
T ss_pred eEEEEc--CCCCceEEEEehhhHHHHHHHHHhhHH
Confidence 999875 358899999999999999999988875
No 142
>PF15404 PH_4: Pleckstrin homology domain
Probab=89.09 E-value=1.7 Score=45.24 Aligned_cols=35 Identities=23% Similarity=0.356 Sum_probs=27.5
Q ss_pred EEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCC
Q 002837 21 KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPS 57 (875)
Q Consensus 21 KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~ 57 (875)
+.|+||.+.+. ...|+++|+||..|.|+.|..-..
T Consensus 1 ~sG~LY~K~~k--hs~F~~~~vvL~~G~Li~f~~~~R 35 (185)
T PF15404_consen 1 MSGYLYQKPRK--HSTFKKYFVVLIPGFLILFQLFKR 35 (185)
T ss_pred CCceeeecCCC--CCCceEEEEEEeCCEEEEEEEEee
Confidence 46999955443 467999999999999999987543
No 143
>KOG1737 consensus Oxysterol-binding protein [Lipid transport and metabolism]
Probab=88.84 E-value=0.36 Score=59.62 Aligned_cols=90 Identities=23% Similarity=0.375 Sum_probs=58.2
Q ss_pred EEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEEEEcCCCC
Q 002837 20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRD 99 (875)
Q Consensus 20 ~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiIt~~~~~ 99 (875)
-.+|||+ |.....+.|.+|||+|.++.|.||++......... +.+.+.... + ..... +-++...+.
T Consensus 78 ~~~g~l~--k~~n~~~~~~~r~f~l~~g~ls~~~~~~~~~~~~~-------~~~~~~~a~--i-~~~~~-~~~~~~~~~- 143 (799)
T KOG1737|consen 78 SLEGILL--KWRNYSKGPSSRWFVLSGGLLSYYFDNSFSKTTCG-------GGINLVTAW--I-QNGER-MDICSVDGS- 143 (799)
T ss_pred cccceee--ccccccCCcccceEEecCcceeeeccCCccccCCC-------Ccccccccc--c-ccCCC-cccchhhcc-
Confidence 3568666 66677889999999999999999998776542221 223332210 0 11111 112222222
Q ss_pred CceEEEEeCCHHHHHHHHHHHHHH
Q 002837 100 GRAFTLKAETSEDLYEWKTALELA 123 (875)
Q Consensus 100 gRty~LqAdTeeE~~eWv~AI~~a 123 (875)
.+.|+..+.+......|+.+++-+
T Consensus 144 ~q~~~~~~~~~~~~~~~~~~~~l~ 167 (799)
T KOG1737|consen 144 CQIYLVELSKKLQRQGWLHALELA 167 (799)
T ss_pred cchhhhhhhHHHhhcchhhhhhhc
Confidence 478889999999999999999876
No 144
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=88.40 E-value=2.3 Score=40.00 Aligned_cols=82 Identities=17% Similarity=0.309 Sum_probs=49.4
Q ss_pred CCCcEEEEEEEeC----CeeeEecC--CCCCCCCCCceeeeeeCc-eEeCCCcceeeccCCceeEEEEcCCCCCceEEEE
Q 002837 34 WKSWKKRWFILTR----TSLVFFKN--DPSALPQRGGEVNLTLGG-IDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLK 106 (875)
Q Consensus 34 ~ksWKKRWFVL~~----~~L~YYKd--~~~~~p~~~~e~~i~Lg~-I~L~~~~sV~~~~~Kk~~fiIt~~~~~gRty~Lq 106 (875)
...|.|.=.+|+. ..|.||-. ++...|+.+ +.... .++..++.. .-.++.+.|++... ++..|.|.
T Consensus 18 ~~~WqkcRl~L~~~~gg~~le~~~~~pPKssrpk~~----v~C~~I~EvR~tt~L-EmPD~~nTFvLK~~--~~~eyI~E 90 (107)
T cd01231 18 GARWQRGRLVLRKAVGGYMLEFYLPLPPKSSKPKLQ----VACSSISEVRECTRL-EMPDNLYTFVLKVD--DNTDIIFE 90 (107)
T ss_pred ccccceeeEEEEecCCCceEEEEccCCCCCCCCccc----cchhhhhhhhhcccc-cccCcccEEEEEec--CCceEEEE
Confidence 4569888777763 24555554 444433321 11111 112222221 12456677888753 46799999
Q ss_pred eCCHHHHHHHHHHHHH
Q 002837 107 AETSEDLYEWKTALEL 122 (875)
Q Consensus 107 AdTeeE~~eWv~AI~~ 122 (875)
|.+..+|+.|+..|+.
T Consensus 91 a~d~~q~~SWla~Ir~ 106 (107)
T cd01231 91 VGDEQQLNSWLAELRY 106 (107)
T ss_pred cCCHHHHHHHHHHHhc
Confidence 9999999999999974
No 145
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.07 E-value=9.6 Score=42.91 Aligned_cols=113 Identities=20% Similarity=0.192 Sum_probs=71.0
Q ss_pred HhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhhcCCCCC
Q 002837 586 RLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAE--------RDLRAALEVGLSMSSGQ 657 (875)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E--------~~l~~~Le~al~~~~~~ 657 (875)
=.++....|+.|..+|+-.+-.+|++|.||++.+.+=...|+.++++|+.|++.= ...+.||+.|=+ .-.
T Consensus 211 visa~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n--~~~ 288 (365)
T KOG2391|consen 211 VISAVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAEN--LEA 288 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc--CcC
Confidence 3566677899999999999999999999999988776666666666666555431 223446666544 112
Q ss_pred CC----C-C-CCCChhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 002837 658 FS----S-S-RGMDSKTRAELEEIALAEADVARLKQKV----AELHHQLNQQR 700 (875)
Q Consensus 658 ~~----~-~-~~lp~~~~~ll~eia~~E~~v~~Le~~v----~~l~~~l~~~~ 700 (875)
++ + + ..|=.+..+.++.=...|..|-.|++-. .+|-.=|.|-|
T Consensus 289 ~~~D~~~~~~~~l~kq~l~~~A~d~aieD~i~~L~~~~r~G~i~l~~yLr~VR 341 (365)
T KOG2391|consen 289 LDIDEAIECTAPLYKQILECYALDLAIEDAIYSLGKSLRDGVIDLDQYLRHVR 341 (365)
T ss_pred CCchhhhhccchHHHHHHHhhhhhhHHHHHHHHHHHHHhcCeeeHHHHHHHHH
Confidence 22 1 1 2333455555666666777777777632 33444444444
No 146
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=87.98 E-value=4.7 Score=39.87 Aligned_cols=87 Identities=13% Similarity=0.156 Sum_probs=51.5
Q ss_pred EEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEEEEcCCCCCceEEEEeCCHHHHHHHH
Q 002837 38 KKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWK 117 (875)
Q Consensus 38 KKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiIt~~~~~gRty~LqAdTeeE~~eWv 117 (875)
+.|.+-|-...+.|.|-.............+-...|.++...-.....+....|.|.... ....|.|+|.|.+..+.|+
T Consensus 30 ~eRhVFLFE~~viF~K~~~~~~~~~~~p~Y~yK~~ikls~lglte~v~gd~~kFeiw~~~-~~~~yilqA~t~e~K~~Wv 108 (133)
T cd01227 30 MQRHIFLHEKAVLFCKKREENGEGEKAPSYSFKQSLKMTAVGITENVKGDTKKFEIWYNA-REEVYILQAPTPEIKAAWV 108 (133)
T ss_pred ceeEEEEecceEEEEEEeccCCCCCcceeEEEeeeEEeecccccccCCCCccEEEEEeCC-CCcEEEEEcCCHHHHHHHH
Confidence 568888999999998865432110111111111223332211100011224457676544 3469999999999999999
Q ss_pred HHHHHHHh
Q 002837 118 TALELALA 125 (875)
Q Consensus 118 ~AI~~al~ 125 (875)
..|+..+.
T Consensus 109 ~~I~~iL~ 116 (133)
T cd01227 109 NEIRKVLT 116 (133)
T ss_pred HHHHHHHH
Confidence 99999985
No 147
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=87.90 E-value=3.9 Score=38.50 Aligned_cols=79 Identities=19% Similarity=0.190 Sum_probs=47.6
Q ss_pred EEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEEEEcCCCCCceEEEEeCCHHHHHHHH
Q 002837 38 KKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWK 117 (875)
Q Consensus 38 KKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiIt~~~~~gRty~LqAdTeeE~~eWv 117 (875)
.+..|.|-...|+|-.-.... +-.-...++|..+.+.+... ...-+.+|.|... .+.+.+||+|+++-.+|+
T Consensus 20 ~rv~~FLfND~Lvva~~~~~~--ky~~~~~~~L~~i~V~ni~D---~~~~kNafki~t~---~~s~i~qaes~~~K~eWl 91 (100)
T cd01226 20 QRVMLFLLNDRLIVGNINAAG--KYVMESTYSLNSVAVVNVKD---RENAKKVLKLLIF---PESRIYQCESARIKTEWF 91 (100)
T ss_pred ceEEEEEeccEEEEEEecccc--eEEEEEEEehHHeEEEecCC---CcCcCceEEEEeC---CccEEEEeCCHHHHHHHH
Confidence 445466666767665433221 11223445666655543222 1233445655432 278999999999999999
Q ss_pred HHHHHHH
Q 002837 118 TALELAL 124 (875)
Q Consensus 118 ~AI~~al 124 (875)
+.|+++.
T Consensus 92 ~~le~a~ 98 (100)
T cd01226 92 EELEQAK 98 (100)
T ss_pred HHHHHHh
Confidence 9999885
No 148
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=86.82 E-value=2 Score=42.45 Aligned_cols=35 Identities=23% Similarity=0.338 Sum_probs=25.3
Q ss_pred eeEEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 002837 89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELA 123 (875)
Q Consensus 89 ~~fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~a 123 (875)
+-|.+..-+..|..|+|+|+|..++++|+++|.++
T Consensus 100 yp~~~~hlG~~~~~~TLyA~s~~~R~~W~e~I~~q 134 (135)
T PF15405_consen 100 YPFTFRHLGRKGYSYTLYASSAQARQKWLEKIEEQ 134 (135)
T ss_dssp EEEEE---GGG-EEEEEE-SSHHHHHHHHHHHHHH
T ss_pred cCEEEEEcCCCceEEEEEeCCHHHHHHHHHHHHhc
Confidence 44555556777788999999999999999999864
No 149
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=85.46 E-value=4.6 Score=39.01 Aligned_cols=87 Identities=21% Similarity=0.156 Sum_probs=52.3
Q ss_pred cEEEEEEEeCCeeeEecCCCCCCCCCCcee----eeeeCc--eEeCCCcceee-ccCCceeEEEEcCCCCCceEEEEeCC
Q 002837 37 WKKRWFILTRTSLVFFKNDPSALPQRGGEV----NLTLGG--IDLNNSGSVVV-REDKKLLTVLFPDGRDGRAFTLKAET 109 (875)
Q Consensus 37 WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~----~i~Lg~--I~L~~~~sV~~-~~~Kk~~fiIt~~~~~gRty~LqAdT 109 (875)
=+-||..|-+..+++.|.....- +.++. .+.+.. |.......... ...-++.|.+... .....|+|+|.|
T Consensus 20 ~k~RyiFLFDk~lI~CK~~~~~~--~~~~Y~~Ke~~~l~~~~I~~~~~~d~~~~~~~~~~~f~L~~~-~~~~~~~f~~Kt 96 (116)
T cd01223 20 TKLRYIFLFDKAVIVCKALGDNT--GDMQYTYKDIHDLADYKIENNPSRDTEGRDTRWKYGFYLAHK-QGKTGFTFYFKT 96 (116)
T ss_pred CceeEEEEecceEEEEEecCCCC--CCccEEhHHhhhhheeeeEecCccCcccCCcceEEEEEEEec-CCCccEEEEeCC
Confidence 46899999999999999665431 11111 122233 32222111100 0112345666543 223679999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 002837 110 SEDLYEWKTALELALAQ 126 (875)
Q Consensus 110 eeE~~eWv~AI~~al~~ 126 (875)
+++.+.|++||..|+..
T Consensus 97 ee~K~kWm~al~~a~sn 113 (116)
T cd01223 97 EHLRKKWLKALEMAMSN 113 (116)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999999863
No 150
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=85.23 E-value=7.8 Score=43.29 Aligned_cols=115 Identities=23% Similarity=0.314 Sum_probs=57.0
Q ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 625 ALEQD----VSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGM-DSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (875)
Q Consensus 625 ~Leqe----V~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~l-p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~ 699 (875)
+|||| |-+|++|..+=..=.+.|+.-|..+.+..+.|..+ +..... .-..-+.+-|..|-+.|..|+.+|...
T Consensus 171 ~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~--Dt~e~~~shI~~Lr~EV~RLR~qL~~s 248 (310)
T PF09755_consen 171 TLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEEN--DTAERLSSHIRSLRQEVSRLRQQLAAS 248 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccC--CchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45554 66777776655555667777776554433333211 000000 012234555566666666666666554
Q ss_pred HhhhcCCCcccchhhhcccccc-hhhhhcccccchhhhhhhhh
Q 002837 700 RQHHYGSLSDACDRYQNVQNHN-SQQRFLQQDFDSTLAFVNHE 741 (875)
Q Consensus 700 ~~~~~~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 741 (875)
..++...+.-......++..-+ .-+.-++++.+-.-|+|.|.
T Consensus 249 q~e~~~k~~~~~~eek~ireEN~rLqr~L~~E~erreal~R~l 291 (310)
T PF09755_consen 249 QQEHSEKMAQYLQEEKEIREENRRLQRKLQREVERREALCRHL 291 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444333222111112221111 22566677888888999885
No 151
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=84.31 E-value=2.6 Score=36.88 Aligned_cols=67 Identities=27% Similarity=0.323 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 622 RRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (875)
Q Consensus 622 ~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~ 700 (875)
++.-|++-+..|+++|+.|..++..+|+.+..-.. -|. + .-++.+|..+..-.+++..|+.+|....
T Consensus 3 ~~~~~~~~l~~L~~~l~~E~~~r~Gaenm~~~~~~---~~~------~---~~~~~~~~~l~es~~ki~~Lr~~L~k~~ 69 (72)
T cd00089 3 VRSKLQSRLERLEKELSIELKVKEGAENLLRLYSD---EKK------K---KLLAEAEQMLRESKQKLELLKMQLEKLK 69 (72)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCC------c---cCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35568899999999999999999999998752111 010 1 3455677788888899999999886543
No 152
>PF15411 PH_10: Pleckstrin homology domain
Probab=83.76 E-value=12 Score=36.09 Aligned_cols=98 Identities=20% Similarity=0.242 Sum_probs=64.2
Q ss_pred eEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCC---------CCceeeeeeCc-eEeCCCcceeecc-CC
Q 002837 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQ---------RGGEVNLTLGG-IDLNNSGSVVVRE-DK 87 (875)
Q Consensus 19 V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~---------~~~e~~i~Lg~-I~L~~~~sV~~~~-~K 87 (875)
....|.+.+.+. ..|+-+.+-|-...|.++|+....... ......+.|.| |-+.....|.... ..
T Consensus 7 Lll~g~~~V~k~----~~erE~~vYLFe~illc~kE~~~~~~~~~~~~~~~~~~~~~~L~LKGrI~i~~i~~v~~~s~~g 82 (116)
T PF15411_consen 7 LLLHGTLTVGKD----DSEREYEVYLFEKILLCCKEVKPKKKKSKQISSKKKKKKKTKLQLKGRIYISNITEVSSSSKPG 82 (116)
T ss_pred eEEccEEEEEeC----CcceeeeeeeeeeeEEEEecCccCccchhhcccccccCCCceEEEeeEEEEEeeeeeeccCCCC
Confidence 344555555443 569999999999999999987765532 12234455554 7777776655433 22
Q ss_pred ceeEEEEc-CCCCCceEEEEeCCHHHHHHHHHHH
Q 002837 88 KLLTVLFP-DGRDGRAFTLKAETSEDLYEWKTAL 120 (875)
Q Consensus 88 k~~fiIt~-~~~~gRty~LqAdTeeE~~eWv~AI 120 (875)
.+...|.- ....--.|+|...+++.++.|..+|
T Consensus 83 ~~~L~i~w~~d~e~~~F~lrf~nee~l~~W~~~L 116 (116)
T PF15411_consen 83 SYSLQISWKGDPELENFTLRFRNEEQLEQWRSAL 116 (116)
T ss_pred ceEEEEEEcCCCCCceEEEEeCCHHHHHHHHhhC
Confidence 23333332 2233468999999999999999875
No 153
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=83.11 E-value=44 Score=43.33 Aligned_cols=74 Identities=30% Similarity=0.399 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHH-HHHHHHHHHHH------HHHH
Q 002837 617 QALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEE-IALAEADVARL------KQKV 689 (875)
Q Consensus 617 ~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~e-ia~~E~~v~~L------e~~v 689 (875)
..+.-++..|+-+|.+|-.+++....-=+.+|.++. +...+.+.+.++.+ |+-+|-+|-.| ++++
T Consensus 816 ~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~--------k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~~Kk~~i 887 (1293)
T KOG0996|consen 816 PELENRLEKLTASVKRLAELIEYLESQIAELEAAVL--------KKVVDKKRLKELEEQIEELKKEVEELQEKAAKKARI 887 (1293)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hccCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 333333444444444444444443333344444432 34456667777776 77777777777 3666
Q ss_pred HHHHHHHHH
Q 002837 690 AELHHQLNQ 698 (875)
Q Consensus 690 ~~l~~~l~~ 698 (875)
..|+..+-.
T Consensus 888 ~~lq~~i~~ 896 (1293)
T KOG0996|consen 888 KELQNKIDE 896 (1293)
T ss_pred HHHHHHHHH
Confidence 666665543
No 154
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=82.84 E-value=13 Score=39.09 Aligned_cols=71 Identities=37% Similarity=0.405 Sum_probs=48.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHH----HHHHHHH
Q 002837 606 AILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEE----IALAEAD 681 (875)
Q Consensus 606 ~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~e----ia~~E~~ 681 (875)
+.||+.-++|.+--+.-|..||+|++.|+-|=.. ....+. ..+.+=.+..+++|.| |-.||+|
T Consensus 13 ~~LQaa~ekRE~lE~rLR~~lE~EL~~lr~qq~~------------~~~~~~-~~~~~~~~~L~~~LrEkEErILaLEad 79 (205)
T PF12240_consen 13 AQLQAACEKREQLERRLRTRLERELESLRAQQRQ------------GNSSGS-SSPSNNASNLKELLREKEERILALEAD 79 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------------CCCCCC-CCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999988888999999999988766321 111111 1222333445666655 7788999
Q ss_pred HHHHHHHH
Q 002837 682 VARLKQKV 689 (875)
Q Consensus 682 v~~Le~~v 689 (875)
+++.||+-
T Consensus 80 ~~kWEqkY 87 (205)
T PF12240_consen 80 MTKWEQKY 87 (205)
T ss_pred HHHHHHHH
Confidence 99988876
No 155
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=81.70 E-value=1.5e+02 Score=37.15 Aligned_cols=33 Identities=15% Similarity=0.290 Sum_probs=16.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 665 DSKTRAELEEIALAEADVARLKQKVAELHHQLN 697 (875)
Q Consensus 665 p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~ 697 (875)
-...++|=.||-.|+.|+...|+++..|..++.
T Consensus 544 r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~ 576 (697)
T PF09726_consen 544 RQRRRQLESELKKLRRELKQKEEQIRELESELQ 576 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555554443
No 156
>KOG1738 consensus Membrane-associated guanylate kinase-interacting protein/connector enhancer of KSR-like [Nucleotide transport and metabolism]
Probab=81.65 E-value=0.27 Score=58.56 Aligned_cols=58 Identities=17% Similarity=0.259 Sum_probs=41.4
Q ss_pred eEEEeeeeeeccCC-CCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcc
Q 002837 19 VFKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGS 80 (875)
Q Consensus 19 V~KeG~L~l~KkG~-~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~s 80 (875)
-..+||||+.|... ....|++.||||.+..|++|.+..... .+..|.|-...|..+..
T Consensus 562 G~~qg~~~r~k~~~~~~~kW~k~~~~l~~~~l~~y~n~~~~~----~e~~i~l~~~~i~~a~e 620 (638)
T KOG1738|consen 562 GDRQGWLTRLKLNHLTQEKWRKIWMVLNDDPLLNYRNHRVRA----AESVIKLPLFTISVAEE 620 (638)
T ss_pred chhhccchhhccchHHHHHhhhheeeecCchhhhhhhhhhhc----hhheeeccchhhhhHHH
Confidence 35678898776652 245699999999999999999988764 34455555555554443
No 157
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=81.37 E-value=8.8 Score=42.52 Aligned_cols=65 Identities=26% Similarity=0.373 Sum_probs=41.2
Q ss_pred hHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 585 QRLEITKNDLRHRIAKEARGNAILQASLERRKQALHER----------RLALEQDVSRLQEQLQAERDLRAALEV 649 (875)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~----------r~~LeqeV~~Lq~qL~~E~~l~~~Le~ 649 (875)
..+|..-.+|+..|..-++.||.|+.-+.+-+..+.+. |..||.++..|++.|+.+.-.|..|+.
T Consensus 50 ~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~ 124 (312)
T PF00038_consen 50 EMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLEN 124 (312)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHH
Confidence 44566666777777777777777777665544433332 445666666666666666666666665
No 158
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=78.71 E-value=64 Score=35.73 Aligned_cols=119 Identities=24% Similarity=0.261 Sum_probs=77.8
Q ss_pred HHHHhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCC
Q 002837 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHE---RRLALEQDVSRLQEQLQAERDLRAALEVGLS-MSSG 656 (875)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~---~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~-~~~~ 656 (875)
+..+..|...-.+++.|+.++.+.+..++.-+..-++.+.+ .|..||..|..|+++|.--+.+|..=-..|. ...+
T Consensus 74 ~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~ 153 (312)
T PF00038_consen 74 ELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQS 153 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT---
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccc
Confidence 45567777777899999999999999999998888876654 4788999999999999988888876223342 2212
Q ss_pred CCCCC--CCCChhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 657 QFSSS--RGMDSKTRAELEEI-ALAEADVARLKQKVAELHHQLNQQ 699 (875)
Q Consensus 657 ~~~~~--~~lp~~~~~ll~ei-a~~E~~v~~Le~~v~~l~~~l~~~ 699 (875)
..+.. .+........|.+| +-.|..+.+-.+++...+..-..+
T Consensus 154 ~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~ 199 (312)
T PF00038_consen 154 SVTVEVDQFRSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEE 199 (312)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceeecccccccchhhhhhHHHHHHHHHhhhhhhhhhhccccccc
Confidence 22221 22233455666777 466777777777666666544333
No 159
>PRK10884 SH3 domain-containing protein; Provisional
Probab=78.23 E-value=23 Score=37.66 Aligned_cols=35 Identities=9% Similarity=0.116 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002837 667 KTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (875)
Q Consensus 667 ~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~ 701 (875)
+-++|-+|++.+..++..|+.+..+++..+..+..
T Consensus 140 ~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf 174 (206)
T PRK10884 140 ENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWF 174 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777888887788888877776655443
No 160
>KOG4047 consensus Docking protein 1 (p62dok) [Signal transduction mechanisms]
Probab=78.09 E-value=1.2 Score=51.71 Aligned_cols=104 Identities=16% Similarity=-0.002 Sum_probs=58.7
Q ss_pred CceEEEeeeeeeccCCCCCCcEEEEEEEeCCe------eeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccC---C
Q 002837 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTS------LVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED---K 87 (875)
Q Consensus 17 ~~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~------L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~---K 87 (875)
...+|.|++++.....+.|.|.++|++|..+. |-+|...+... .......+ -+.+.++++.+|....+ .
T Consensus 6 ~~~~k~g~~~~~~~r~~~k~~~~~~~~L~~gs~~g~aRle~~~~~g~~~-~~~~~~~~-rR~~~ls~~~S~e~~~~~~~~ 83 (429)
T KOG4047|consen 6 SCLVKDGVPDNHRNKFKVKNVRDDGAELGSGSMELTARLEILESRGRES-VRWPYRCL-RRYGYLSNLFSFESGRRCQTG 83 (429)
T ss_pred CcccccCccchhhhhhccccccccceeeeccccccchhhhhhhccCCcc-cccchhcc-eeeEeeccceeeecccccccC
Confidence 45789999998887778899999999998863 33343332211 11111111 14566766665433211 1
Q ss_pred ceeEEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002837 88 KLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (875)
Q Consensus 88 k~~fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~ 125 (875)
...+..+..... . +|-|...-+...|+++|...+-
T Consensus 84 ~~i~~~f~~~a~-e--~~~~~q~l~~~~w~~~i~~~~~ 118 (429)
T KOG4047|consen 84 PGITAFFCDRAE-E--LFNMLQDLMQANWINAIEEPAI 118 (429)
T ss_pred CCceEEEecchH-H--HHHHHHHHHhhhhhhhhhhccc
Confidence 112222221111 1 5556666777889999987653
No 161
>KOG3727 consensus Mitogen inducible gene product (contains ERM and PH domains) [Cell cycle control, cell division, chromosome partitioning]
Probab=77.72 E-value=0.41 Score=56.28 Aligned_cols=88 Identities=16% Similarity=0.344 Sum_probs=55.7
Q ss_pred CCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEEEEcCCCCCceEEEEeCCHHHH
Q 002837 34 WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDL 113 (875)
Q Consensus 34 ~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiIt~~~~~gRty~LqAdTeeE~ 113 (875)
+|..+|.||..+.-.+.+|++..+.. +.+-..+.+.||.++....++..... .|.+.+.......+|+.|+++...
T Consensus 372 ~Kg~kr~f~t~~dl~~~~~~s~~~s~--~ap~~~i~l~gcev~~dV~~~~~k~~--i~l~~~~~~~msEi~LRCd~E~QY 447 (664)
T KOG3727|consen 372 LKGYKRYFFTFRDLHLSLYKSSEDSR--GAPAISINLKGCEVTPDVNLSQQKYA--IKLLVPTAEGMSEIWLRCDNEQQY 447 (664)
T ss_pred hhhhhhHHHHHHHHHHHHHhhHhhhc--CCCCCchhhcCcccCCccccccccce--EEEEeecCCccceeEEecCCHHHH
Confidence 66677777777665555554443332 22233456677777765443222233 344444344478999999999999
Q ss_pred HHHHHHHHHHHh
Q 002837 114 YEWKTALELALA 125 (875)
Q Consensus 114 ~eWv~AI~~al~ 125 (875)
-.||+|.+-|..
T Consensus 448 A~WMAaCrLASK 459 (664)
T KOG3727|consen 448 ARWMAACRLASK 459 (664)
T ss_pred HHHHHHhhHhhc
Confidence 999999987754
No 162
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=77.29 E-value=16 Score=34.61 Aligned_cols=33 Identities=21% Similarity=0.325 Sum_probs=25.3
Q ss_pred eeEEEEcCCCC--CceEEEEeCCHHHHHHHHHHHHH
Q 002837 89 LLTVLFPDGRD--GRAFTLKAETSEDLYEWKTALEL 122 (875)
Q Consensus 89 ~~fiIt~~~~~--gRty~LqAdTeeE~~eWv~AI~~ 122 (875)
.||.|.. +.+ .+++.|-|++.++++.|+..|+.
T Consensus 80 ~~fTIiy-~~~~~~k~L~lVA~s~~~a~~W~~gL~~ 114 (115)
T cd01248 80 RCFTIVY-GTDLNLKSLDLVAPSEEEAKTWVSGLRK 114 (115)
T ss_pred cEEEEEE-CCCCCeeEEEEEECCHHHHHHHHHHHhh
Confidence 4555543 223 67899999999999999999864
No 163
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=76.44 E-value=19 Score=37.89 Aligned_cols=35 Identities=20% Similarity=0.354 Sum_probs=16.4
Q ss_pred HhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHH
Q 002837 584 IQRLEITKNDLRHRIAKEARGNAILQASLERRKQA 618 (875)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~ 618 (875)
|-+|.+.=.|||.+|..=.++|-.|..--.+..++
T Consensus 14 i~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kA 48 (194)
T PF15619_consen 14 IKELQNELAELQRKLQELRKENKTLKQLQKRQEKA 48 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555544443333333
No 164
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=75.82 E-value=35 Score=42.15 Aligned_cols=106 Identities=20% Similarity=0.242 Sum_probs=70.8
Q ss_pred HhHhhhhhHHHHHHHHHHhhhhhhhhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 002837 584 IQRLEITKNDLRHRIAKEARGNAILQASL---ERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSS 660 (875)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~n~~~q~~~---~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~ 660 (875)
+++|...-.++..+-.++...+..+ ..+ +++...+......++++.+.|+.++..-..=...|+..+....|
T Consensus 184 ~~~L~~dl~~~~~~~~~~~~~~~~~-~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG---- 258 (650)
T TIGR03185 184 IDRLAGDLTNVLRRRKKSELPSSIL-SEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGG---- 258 (650)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----
Confidence 5566655566666766666554433 232 33444455556667777777777777666666666666654444
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002837 661 SRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQHH 703 (875)
Q Consensus 661 ~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~~~ 703 (875)
.++.+...||.++..++++....+.+|.+.....
T Consensus 259 ---------~~~~~r~~Le~ei~~le~e~~e~~~~l~~l~~~~ 292 (650)
T TIGR03185 259 ---------DLFEEREQLERQLKEIEAARKANRAQLRELAADP 292 (650)
T ss_pred ---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 6777788888888888888888888888776554
No 165
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=73.55 E-value=30 Score=47.53 Aligned_cols=79 Identities=19% Similarity=0.355 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC---C-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 618 ALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSS---S-RGMDSKTRAELEEIALAEADVARLKQKVAELH 693 (875)
Q Consensus 618 ~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~---~-~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~ 693 (875)
.+...+..||++|..|+..|.+|...|.=+|++...--|.+.. + .-+-.+..+|-.+++..|.++..|..++.++.
T Consensus 1010 ~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~ 1089 (1930)
T KOG0161|consen 1010 SLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQ 1089 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4456678899999999999999999999999655433343321 1 11233344444555555555555555555554
Q ss_pred HHH
Q 002837 694 HQL 696 (875)
Q Consensus 694 ~~l 696 (875)
..+
T Consensus 1090 ~~~ 1092 (1930)
T KOG0161|consen 1090 AEV 1092 (1930)
T ss_pred HHH
Confidence 433
No 166
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=71.50 E-value=99 Score=33.68 Aligned_cols=112 Identities=23% Similarity=0.356 Sum_probs=64.4
Q ss_pred HhhhhhHHHHHHHH----HHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 002837 586 RLEITKNDLRHRIA----KEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSS 661 (875)
Q Consensus 586 ~~~~~~~~~~~~~~----~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~ 661 (875)
+.|..+.+|..|+. +-.+.+..|+.+ +.+-..|.+.+..+|.+-..|+..-.+=......|+.--.+.. .-=
T Consensus 2 ~aEr~k~Ele~rL~q~eee~~~a~~~L~e~-e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~---eEk 77 (246)
T PF00769_consen 2 EAEREKQELEERLRQMEEEMRRAQEALEES-EETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQE---EEK 77 (246)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 34556666666652 122444455444 4444455555555555555555544333333333333221110 011
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002837 662 RGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (875)
Q Consensus 662 ~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~ 701 (875)
..|..++.+.-.+|+.|+.++...+..+..|+.+|...|.
T Consensus 78 ~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~ 117 (246)
T PF00769_consen 78 EQLEQELREAEAEIARLEEESERKEEEAEELQEELEEARE 117 (246)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788999999999999999999999999999887776
No 167
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=71.43 E-value=18 Score=36.83 Aligned_cols=65 Identities=23% Similarity=0.313 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 622 RRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (875)
Q Consensus 622 ~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~ 694 (875)
--.+|..++..|+++|..-..-...|+.-|..-.. . | .+.+|..+|+.|+.++..|+.++..|+.
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~------~-~-t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSS------E-P-TNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------C-C-CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666777777766666666666554431111 1 1 2458999999999999999999998873
No 168
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=71.12 E-value=0.1 Score=67.82 Aligned_cols=104 Identities=22% Similarity=0.266 Sum_probs=67.1
Q ss_pred CceEEEeeeeeecc------CCCCCCcEEEEEEEeCCeeeEecCCCCCCCC----CCceeeeeeCceEeCCCcceeeccC
Q 002837 17 NTVFKSGPLFISSK------GIGWKSWKKRWFILTRTSLVFFKNDPSALPQ----RGGEVNLTLGGIDLNNSGSVVVRED 86 (875)
Q Consensus 17 ~~V~KeG~L~l~Kk------G~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~----~~~e~~i~Lg~I~L~~~~sV~~~~~ 86 (875)
...-.+|+||.+.- ...-++|...||++..+.+.||+|.+..... ..++..+.+.++.+.- -....+
T Consensus 2297 ~w~~~eG~L~Rk~~~~A~e~k~~nRsw~~vy~~i~e~el~fykD~k~~~a~ve~~~r~e~~lel~~a~i~~---a~dy~k 2373 (2473)
T KOG0517|consen 2297 AWRQLEGFLYRKHLLGALEIKASNRSWDNVYCRIREKELGFYKDAKKDLASVELLVRGEPPLELDMAAIEV---ASDYHK 2373 (2473)
T ss_pred HHHHHHhHHHHHHHHhhhhhhhhcccHHHHHHHHHhccchhhcccCcccccchhhccCCcchhcchhHHHH---HHHHHH
Confidence 33577899874311 1235679999999999999999998765321 0112222222211110 011235
Q ss_pred CceeEEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002837 87 KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (875)
Q Consensus 87 Kk~~fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~ 125 (875)
|++.|.+. ..+|..|.|+|..+++|+.|+.++.....
T Consensus 2374 kk~v~~l~--~~~gae~llq~k~ee~m~sWL~~~a~~~~ 2410 (2473)
T KOG0517|consen 2374 KKHVFLLQ--LPPGAEHLLQAKDEEEMESWLRALAVKRA 2410 (2473)
T ss_pred HhHhhhhc--CCchHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 66667665 45789999999999999999998887765
No 169
>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]
Probab=71.08 E-value=3.9 Score=46.57 Aligned_cols=109 Identities=20% Similarity=0.253 Sum_probs=65.4
Q ss_pred ceEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCC-CCceeeeee---CceEeCCCcceeeccCCceeEEE
Q 002837 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQ-RGGEVNLTL---GGIDLNNSGSVVVREDKKLLTVL 93 (875)
Q Consensus 18 ~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~-~~~e~~i~L---g~I~L~~~~sV~~~~~Kk~~fiI 93 (875)
.|-+-|||-.+-.+.+...|+..+++|+...|.+|.+-+..... ..+-...+| +.+.-.+..... ...-...|-+
T Consensus 291 evkHiGWLaeq~~~~G~~~w~P~l~~lTekelliYes~P~~keaws~P~~~ypLvaTRLvhsg~~~~s~-~~g~~lsFa~ 369 (506)
T KOG3551|consen 291 EVKHIGWLAEQVSGGGISQWKPKLMALTEKELLIYESMPWTKEAWSRPRHTYPLVATRLVHSGSGKGSV-IKGLTLSFAT 369 (506)
T ss_pred chhhhhhHHhhccCCChhhhhhheeeechhhhhhhhcChhhHHHhcChhhhhhhhhhhheecCCCCCCC-cCCceEEEEE
Confidence 56777977655456668889999999999999999987765411 000000011 111111111000 0111124555
Q ss_pred EcCCCCC-ceEEEEeCCHHHHHHHHHHHHHHHhhC
Q 002837 94 FPDGRDG-RAFTLKAETSEDLYEWKTALELALAQA 127 (875)
Q Consensus 94 t~~~~~g-Rty~LqAdTeeE~~eWv~AI~~al~~a 127 (875)
...++.| .+|+|.++|..|+-.|..+|-.-.+++
T Consensus 370 RtGTrqGV~thlfrvEThrdLa~WtRslVqGch~A 404 (506)
T KOG3551|consen 370 RTGTRQGVETHLFRVETHRELAAWTRSLVQGCHEA 404 (506)
T ss_pred ecccccceEEEEEEeccHHHHHHHHHHHHHHHHHH
Confidence 4444444 699999999999999999886665543
No 170
>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]
Probab=70.50 E-value=2.1 Score=51.57 Aligned_cols=86 Identities=6% Similarity=-0.120 Sum_probs=56.2
Q ss_pred EEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceee---ccCCceeEEEEcC
Q 002837 20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV---REDKKLLTVLFPD 96 (875)
Q Consensus 20 ~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~---~~~Kk~~fiIt~~ 96 (875)
.+.| +++++.+.+|.|+.+||++.++.+.||+.+-+.. .+ .+.+...++... ...++ ..++.
T Consensus 260 s~~k--~lkrr~~v~k~gqi~~y~~~~~~~~~p~s~~d~~-s~---------~~~~~~~~s~~fqli~~t~~--~~~~~- 324 (936)
T KOG0248|consen 260 SRIK--SLKRRYVVFKNGQISFYRKHNNRDEEPASKIDIR-SV---------TKLEQQGAAYAFQLITSTDK--MNFMT- 324 (936)
T ss_pred HHHH--HHHhHheeeccceEEEEEcCCCccccccCccccc-cc---------ceeeccchhHHhhhhhhcee--EEEec-
Confidence 4445 4456667799999999999999999999987642 11 122222111111 11222 12221
Q ss_pred CCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 002837 97 GRDGRAFTLKAETSEDLYEWKTALELAL 124 (875)
Q Consensus 97 ~~~gRty~LqAdTeeE~~eWv~AI~~al 124 (875)
.+|++-++...-+..|++++....
T Consensus 325 ----~s~~lt~dw~~iL~~~iKv~~~~~ 348 (936)
T KOG0248|consen 325 ----ESERTTHDWVTILSAAIKATTLRE 348 (936)
T ss_pred ----cChhhhhhhHHHHHHHHHHHhccc
Confidence 579999999999999999988764
No 171
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=70.21 E-value=49 Score=38.98 Aligned_cols=94 Identities=23% Similarity=0.351 Sum_probs=59.2
Q ss_pred HHhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 002837 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSR 662 (875)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~ 662 (875)
.|++|-.+-..|-.+|.+--|-- ...+.++++--+|.-|--+++ +-++||.. -..
T Consensus 272 ~i~~lk~~n~~l~e~i~ea~k~s--------~~i~~l~ek~r~l~~D~nk~~-----------~~~~~mk~------K~~ 326 (622)
T COG5185 272 DIANLKTQNDNLYEKIQEAMKIS--------QKIKTLREKWRALKSDSNKYE-----------NYVNAMKQ------KSQ 326 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhhHHHHH-----------HHHHHHHH------HHH
Confidence 46666666666666665333322 223344444445555544443 22223311 013
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002837 663 GMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (875)
Q Consensus 663 ~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~ 701 (875)
.-|.+...|=.||...|++|.-|..+.+.||+||..|+.
T Consensus 327 ~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~I 365 (622)
T COG5185 327 EWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGI 365 (622)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCC
Confidence 356788899999999999999999999999999987765
No 172
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=70.11 E-value=51 Score=34.37 Aligned_cols=99 Identities=21% Similarity=0.293 Sum_probs=54.4
Q ss_pred HhhhhhHHHHHHHHHHhhhhhhhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 002837 586 RLEITKNDLRHRIAKEARGNAILQASLE---RRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSR 662 (875)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~n~~~q~~~~---~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~ 662 (875)
.+--.+.+|+.++...--.+..+++.+. ++-..+...+..|+..+..|...|.+-......|..-+.
T Consensus 85 el~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~---------- 154 (194)
T PF08614_consen 85 ELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQ---------- 154 (194)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
T ss_pred ccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 3445677788887655555555555553 334455666778999999999999888888887776554
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002837 663 GMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (875)
Q Consensus 663 ~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~ 701 (875)
.|-.+..++|+.+.+|+++=.+|=.++-+...
T Consensus 155 -------~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~ 186 (194)
T PF08614_consen 155 -------ALQLQLNMLEEKLRKLEEENRELVERWMQRKA 186 (194)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788899999999999888888776655443
No 173
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=68.59 E-value=69 Score=36.17 Aligned_cols=38 Identities=21% Similarity=0.315 Sum_probs=24.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002837 664 MDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (875)
Q Consensus 664 lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~ 701 (875)
=+.+..++=++|+.++++|..+.+++.+|+.+|.+-..
T Consensus 207 D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~ 244 (325)
T PF08317_consen 207 DQEELEALRQELAEQKEEIEAKKKELAELQEELEELEE 244 (325)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677777777777666666666666655443
No 174
>PRK11637 AmiB activator; Provisional
Probab=68.49 E-value=34 Score=40.00 Aligned_cols=31 Identities=26% Similarity=0.224 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 670 AELEEIALAEADVARLKQKVAELHHQLNQQR 700 (875)
Q Consensus 670 ~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~ 700 (875)
++=.+|+.++.+|..++.++..++..|.+..
T Consensus 100 ~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rl 130 (428)
T PRK11637 100 QLNKQIDELNASIAKLEQQQAAQERLLAAQL 130 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555555555555555554444433
No 175
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=68.40 E-value=67 Score=33.91 Aligned_cols=115 Identities=19% Similarity=0.223 Sum_probs=69.7
Q ss_pred cccCcccCCCCcccCCCCh--hHHHHHhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHH----HHHHHHHHHHHHHHHHHH
Q 002837 560 WGRSNARKTSSVESIDSSG--EEELAIQRLEITKNDLRHRIAKEARGNAILQASLERR----KQALHERRLALEQDVSRL 633 (875)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~r----k~~~~~~r~~LeqeV~~L 633 (875)
.|++.. +......||+. +.+-++-||+.-=.+|-.+|++--+ ..++| .....--|-+|||=.+=-
T Consensus 74 lG~~~~--s~~~~gTdfS~~~~~dwEevrLkrELa~Le~~l~~~~~-------~~~~~~~~~~~~~~lvk~e~EqLL~YK 144 (195)
T PF12761_consen 74 LGRGGK--SYKEKGTDFSATEGTDWEEVRLKRELAELEEKLSKVEQ-------AAESRRSDTDSKPALVKREFEQLLDYK 144 (195)
T ss_pred hccccC--CCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH-------HHHhcccCCcchHHHHHHHHHHHHHHH
Confidence 555443 45556677765 4566788898888888888864222 12221 112222344666665555
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 634 QEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (875)
Q Consensus 634 q~qL~~E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~ 700 (875)
++||++ .-+ ++ ...+...+.+=++|..+|+.|.-||.++..=+..|.+-+
T Consensus 145 ~~ql~~------~~~---~~--------~~~~~~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 145 ERQLRE------LEE---GR--------SKSGKNLKSVREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHh------hhc---cC--------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 555543 222 21 223455677778888888888888888887777776644
No 176
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=68.02 E-value=44 Score=38.67 Aligned_cols=110 Identities=21% Similarity=0.259 Sum_probs=71.0
Q ss_pred hhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC--------
Q 002837 588 EITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFS-------- 659 (875)
Q Consensus 588 ~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~-------- 659 (875)
+.+.++|+.+-. +.|+.| .+|-....+.+..||....+..+++..-...-..|+.|+....|++.
T Consensus 232 ~~~~~dl~~Q~~---~vn~al----~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~ 304 (384)
T PF03148_consen 232 EQTANDLRAQAD---AVNAAL----RKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLEN 304 (384)
T ss_pred HHHHHHHHHHHH---HHHHHH----HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh
Confidence 344444444433 444444 34445566666667777766666666666666667777755555432
Q ss_pred ---CC---CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 002837 660 ---SS---RGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQHHY 704 (875)
Q Consensus 660 ---~~---~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~~~~ 704 (875)
=| -+-++.-..|+.||..|++.|..|.+++...+..|..-...+.
T Consensus 305 R~~RP~vElcrD~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~ 355 (384)
T PF03148_consen 305 RTQRPNVELCRDPPQYGLIEEVKELRESIEALQEKLDEAEASLQKLERTRL 355 (384)
T ss_pred HhcCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12 3345666788899999999999999999988887776655443
No 177
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=67.79 E-value=1.3e+02 Score=32.75 Aligned_cols=45 Identities=27% Similarity=0.355 Sum_probs=23.8
Q ss_pred HHhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 002837 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALE 627 (875)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~Le 627 (875)
.|+.++..-..|+.+|.+.-+.....+..++.++..++.+|..|.
T Consensus 64 ~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 64 EIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555555555555555555555555554
No 178
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=67.67 E-value=26 Score=30.89 Aligned_cols=55 Identities=24% Similarity=0.357 Sum_probs=40.3
Q ss_pred hHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
Q 002837 585 QRLEITKNDLRHRIAKEARGNAILQASLERRKQ----------ALHERRLALEQDVSRLQEQLQA 639 (875)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~----------~~~~~r~~LeqeV~~Lq~qL~~ 639 (875)
++||+.+..||.++.-=.+-|++-|..+..=.. ..++.=..|..+|+.|+++|++
T Consensus 1 ~~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 1 QKLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999998888888888766532211 2233344588999999998765
No 179
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=67.54 E-value=86 Score=35.78 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 673 EEIALAEADVARLKQKVAELHHQLNQ 698 (875)
Q Consensus 673 ~eia~~E~~v~~Le~~v~~l~~~l~~ 698 (875)
.+++.++.++..++.++..++.++.+
T Consensus 210 ~~l~~~~~~l~~~~~~l~~~~~~~~~ 235 (423)
T TIGR01843 210 GELGRLEAELEVLKRQIDELQLERQQ 235 (423)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555444443
No 180
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=66.86 E-value=1.1e+02 Score=33.27 Aligned_cols=29 Identities=28% Similarity=0.393 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 611 SLERRKQALHERRLALEQDVSRLQEQLQA 639 (875)
Q Consensus 611 ~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~ 639 (875)
.|.+......+++.+|+-++..|...+++
T Consensus 93 aL~~E~~~ak~r~~~le~el~~l~~~~~~ 121 (239)
T COG1579 93 ALNIEIQIAKERINSLEDELAELMEEIEK 121 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555566555555544443
No 181
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=66.85 E-value=27 Score=47.38 Aligned_cols=94 Identities=20% Similarity=0.286 Sum_probs=65.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC-CCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 002837 608 LQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQF-SSSRGMDSKTRAELEEIALAEADVARLK 686 (875)
Q Consensus 608 ~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~-~~~~~lp~~~~~ll~eia~~E~~v~~Le 686 (875)
++-+...+|..+..+-..|+.++.+|++.|+++..=.+-|..-+....-.. ..=-.+=.....++++|+.++.++..||
T Consensus 792 ~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le 871 (1822)
T KOG4674|consen 792 LEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLE 871 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445566677788888999999999999999876666665554221100 0112233456788999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 002837 687 QKVAELHHQLNQQRQ 701 (875)
Q Consensus 687 ~~v~~l~~~l~~~~~ 701 (875)
.++.+|-.+|--.-.
T Consensus 872 ~k~~eL~k~l~~~~~ 886 (1822)
T KOG4674|consen 872 IKLSELEKRLKSAKT 886 (1822)
T ss_pred HHHHHHHHHHHHhHH
Confidence 999999888765544
No 182
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=66.64 E-value=0.12 Score=57.93 Aligned_cols=121 Identities=25% Similarity=0.352 Sum_probs=80.1
Q ss_pred HHhHhhhhhHHHHH---HHHHHhhhhhhhhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 002837 583 AIQRLEITKNDLRH---RIAKEARGNAILQASLERRKQALHERRLA---LEQDVSRLQEQLQAERDLRAALEVGLSMSSG 656 (875)
Q Consensus 583 ~~~~~~~~~~~~~~---~~~~~~~~n~~~q~~~~~rk~~~~~~r~~---LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~ 656 (875)
..+-|++.+.+|+- +.....-+||.|--.+|.++++|+.|..+ |-.--.+|..+|-.|+.--+.|-.+=++-.|
T Consensus 419 yleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtlltgdGgGtG 498 (593)
T KOG4807|consen 419 YLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEITRLRTLLTGDGGGTG 498 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHhccCCCCCC
Confidence 34556777777764 45667789999988899999999988643 5555667888999998755544443332222
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhcCC
Q 002837 657 QFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQ-QRQHHYGS 706 (875)
Q Consensus 657 ~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~-~~~~~~~s 706 (875)
-+....-+..-.|.| +-+-|.+|-+|+|+|..|+..|.- +|..++.|
T Consensus 499 -splaqgkdayELEVL--LRVKEsEiQYLKqEissLkDELQtalrDKkyaS 546 (593)
T KOG4807|consen 499 -SPLAQGKDAYELEVL--LRVKESEIQYLKQEISSLKDELQTALRDKKYAS 546 (593)
T ss_pred -CccccCcchhhHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 112222333333333 456799999999999999998864 44545544
No 183
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=65.70 E-value=8.8 Score=45.74 Aligned_cols=100 Identities=20% Similarity=0.240 Sum_probs=61.5
Q ss_pred CCCCCCCCCceEEEeeee--eeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcce-----
Q 002837 9 ERPRPGASNTVFKSGPLF--ISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSV----- 81 (875)
Q Consensus 9 ~~~~~~~s~~V~KeG~L~--l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV----- 81 (875)
.++..+.+++..|+||+. ..+. ..-||.|..|...++..|.+..... -...|.|..+.+|
T Consensus 403 vkhtkRksst~~kEGWmvHyt~~d----~lRkrHYWrldsk~itlfqn~s~~r---------yYkeIPLsEIl~v~~~~~ 469 (888)
T KOG4236|consen 403 VKHTKRKSSTKLKEGWMVHYTSKD----NLRKRHYWRLDSKCITLFQNESTNR---------YYKEIPLSEILSVSSNNG 469 (888)
T ss_pred hccccccchhhhhcceEEEEechh----hhhhhhhheeccceeEeeecCCCce---------eEEeecHHHhheeeccCC
Confidence 344556678899999773 2222 1235666678888888887766542 1222334333332
Q ss_pred ---eeccCCceeEEEEcCCCCCceEEEEeCC------------HHHHHHHHHHHHHHHh
Q 002837 82 ---VVREDKKLLTVLFPDGRDGRAFTLKAET------------SEDLYEWKTALELALA 125 (875)
Q Consensus 82 ---~~~~~Kk~~fiIt~~~~~gRty~LqAdT------------eeE~~eWv~AI~~al~ 125 (875)
++.....+||.|.+. .+.||-.++ ...+..|-.||+.++.
T Consensus 470 ~~~vp~~~~phcFEI~T~----~~vyfVge~p~~~~~~~~g~g~d~a~~w~~ai~~alM 524 (888)
T KOG4236|consen 470 FSLVPAGTNPHCFEIRTA----TTVYFVGENPSSTPGGESGVGLDAAQGWETAIQQALM 524 (888)
T ss_pred cccCCCCCCCceEEEEee----eEEEEecCCCCCCccccccccchhhccCchhhhhccc
Confidence 233455679988754 356666666 4458899999999875
No 184
>PRK11637 AmiB activator; Provisional
Probab=64.39 E-value=1.4e+02 Score=34.86 Aligned_cols=88 Identities=16% Similarity=0.273 Sum_probs=45.4
Q ss_pred HHHHHhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 002837 580 EELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFS 659 (875)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~ 659 (875)
|-..|+.+...+.+|...+ ..++..+..+.....+++++..+|+.+..+-..+...|+.
T Consensus 168 d~~~l~~l~~~~~~L~~~k-----------~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~---------- 226 (428)
T PRK11637 168 RQETIAELKQTREELAAQK-----------AELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLES---------- 226 (428)
T ss_pred HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 4555666666665554333 2334444444444444555555555444444444444433
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 660 SSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQ 695 (875)
Q Consensus 660 ~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~ 695 (875)
..++.-++|+.|+.+..+|+..+..+..+
T Consensus 227 -------~~~~~~~~l~~l~~~~~~L~~~I~~l~~~ 255 (428)
T PRK11637 227 -------SLQKDQQQLSELRANESRLRDSIARAERE 255 (428)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22344455566666666676666666543
No 185
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.31 E-value=1.3e+02 Score=32.03 Aligned_cols=47 Identities=26% Similarity=0.336 Sum_probs=26.2
Q ss_pred ccccCcccCCCCc-ccCCCChhHHHHHhHhhhhhHHHHHHHHHHhhhhhhh
Q 002837 559 FWGRSNARKTSSV-ESIDSSGEEELAIQRLEITKNDLRHRIAKEARGNAIL 608 (875)
Q Consensus 559 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~ 608 (875)
++|....++..+. |.|+---|-| +=|+-...-|..||..|++-||.-
T Consensus 7 ~FG~~k~~~~~t~~eaI~kLrEte---emL~KKqe~Le~ki~~e~e~~A~k 54 (221)
T KOG1656|consen 7 LFGGMKQEAKPTPQEAIQKLRETE---EMLEKKQEFLEKKIEQEVENNARK 54 (221)
T ss_pred HhCcccccCCCChHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666665554 3333222211 112334456888999998887763
No 186
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=63.81 E-value=90 Score=39.22 Aligned_cols=109 Identities=19% Similarity=0.373 Sum_probs=64.8
Q ss_pred HHhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhcCCC
Q 002837 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQ---ALHERRLALEQDVSRLQEQLQAERDLRAALEV----GLSMSS 655 (875)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~---~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~----al~~~~ 655 (875)
-|+|++.++.++|.|+. .|+...+++-+ .+.++|..|.+.-++|.+++++=.+.+..|.. .|+...
T Consensus 552 Yi~~~~~ar~ei~~rv~-------~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~ 624 (717)
T PF10168_consen 552 YIEKQDLAREEIQRRVK-------LLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLN 624 (717)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777777777777764 22222222222 33445555655555555555544444444443 222221
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002837 656 GQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (875)
Q Consensus 656 ~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~ 701 (875)
.. .|. |-..-++.-.|+..+...+-.|..-+..++.++..|+.
T Consensus 625 ~~--~P~-LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~ 667 (717)
T PF10168_consen 625 SQ--LPV-LSEAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQR 667 (717)
T ss_pred cc--CCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 222 44555888899999999999999999999999977654
No 187
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=62.22 E-value=78 Score=42.09 Aligned_cols=111 Identities=20% Similarity=0.287 Sum_probs=53.8
Q ss_pred HHHHHhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhcCCC
Q 002837 580 EELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVS----RLQEQLQAERDLRAALEVGLSMSS 655 (875)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~----~Lq~qL~~E~~l~~~Le~al~~~~ 655 (875)
-+..+++|+......+.++.++ .+.++.....++...++.-.+|++++. .+..+++.++. .|..++..-.
T Consensus 382 y~~~~~~l~~~~~~~~~~~~~~---~~~~~e~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~l~~l~ 455 (1201)
T PF12128_consen 382 YNKLKQKLEEAFNRQQERLQAQ---QDEIREEKAERREQIEEEYQALEQELRQQSQEQLEELQEQRE---QLKSELAELK 455 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 3456777776666655555443 333344444444444444334444433 22333332222 2222222111
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 656 GQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (875)
Q Consensus 656 ~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~ 700 (875)
..+.. |..+.++..+++.++.++....+++.....++.+.+
T Consensus 456 ~~~~~----~~~~~e~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 496 (1201)
T PF12128_consen 456 QQLKN----PQYTEEEKEQLEQADKRLEQAQEQQNQAQQAVEELQ 496 (1201)
T ss_pred HHHhC----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222 333457788888888887776666665555544443
No 188
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=60.97 E-value=40 Score=40.65 Aligned_cols=51 Identities=22% Similarity=0.355 Sum_probs=25.1
Q ss_pred HHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 594 LRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALE 648 (875)
Q Consensus 594 ~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le 648 (875)
||.++-+--|++.-|+.. ...|.+....|+.+|.+|+.+|+.++.-..-|+
T Consensus 141 lQ~qlE~~qkE~eeL~~~----~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~ 191 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLKE----NEQLEEEVEQLREEVERLEAELEQEEEEMEQLK 191 (546)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455554444555544433 223344445555566666666655544444443
No 189
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=60.31 E-value=1.1e+02 Score=37.07 Aligned_cols=100 Identities=28% Similarity=0.412 Sum_probs=61.9
Q ss_pred hHHHHHhHhhhhhHHHHHHHHHHhhhhhh--------------hhh---hHHHHHHHHHHHH-------HHHHHHHHHHH
Q 002837 579 EEELAIQRLEITKNDLRHRIAKEARGNAI--------------LQA---SLERRKQALHERR-------LALEQDVSRLQ 634 (875)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~--------------~q~---~~~~rk~~~~~~r-------~~LeqeV~~Lq 634 (875)
.=+..|-||+.-=.+|+.+..|-.|+=+. ||| .+.+|.+.+.+-- ..|..++.+++
T Consensus 110 ~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 110 KLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 45667778888888888887665443222 222 2245555443332 23556667777
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 635 EQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQ 698 (875)
Q Consensus 635 ~qL~~E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~ 698 (875)
++|+.|+.+|.-++. +.|.||+||+-+... =++.|.+++....+
T Consensus 190 ~~ld~Etllr~d~~n-----------------~~q~Lleel~f~~~~---h~~eI~e~~~~~~r 233 (546)
T KOG0977|consen 190 KQLDDETLLRVDLQN-----------------RVQTLLEELAFLKRI---HKQEIEEERRKARR 233 (546)
T ss_pred HHHHHHHHHHHHHHh-----------------HHHHHHHHHHHHHhc---cHHHHHHHHHHHhh
Confidence 888888888887776 456899999887644 34455555444433
No 190
>PRK11519 tyrosine kinase; Provisional
Probab=59.94 E-value=1.2e+02 Score=37.92 Aligned_cols=81 Identities=20% Similarity=0.306 Sum_probs=52.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHH
Q 002837 604 GNAILQASLERRKQALHERRLALEQDVSRLQEQLQA-ERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADV 682 (875)
Q Consensus 604 ~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~-E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v 682 (875)
.++-++..+++|......-..-|++.+.+|+++|++ |..|...-. ..+.+. ++..++.+|..++.++..+
T Consensus 250 ~~~Yi~~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~-----~~~~vd----~~~ea~~~l~~~~~l~~ql 320 (719)
T PRK11519 250 TRNYLEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQ-----DKDSVD----LPLEAKAVLDSMVNIDAQL 320 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HcCCCC----chHHHHHHHHHHHHHHHHH
Confidence 344455556666666667777788888888888875 333333222 122222 4577888888888888888
Q ss_pred HHHHHHHHHHH
Q 002837 683 ARLKQKVAELH 693 (875)
Q Consensus 683 ~~Le~~v~~l~ 693 (875)
..|+.+..+|.
T Consensus 321 ~~l~~~~~~l~ 331 (719)
T PRK11519 321 NELTFKEAEIS 331 (719)
T ss_pred HHHHHHHHHHH
Confidence 77777666653
No 191
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=59.46 E-value=1.5e+02 Score=31.43 Aligned_cols=118 Identities=21% Similarity=0.295 Sum_probs=79.4
Q ss_pred HHHhHhhhhhHHHHHHHHHHhhhhhhhh---------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 582 LAIQRLEITKNDLRHRIAKEARGNAILQ---------------ASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAA 646 (875)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~n~~~q---------------~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~ 646 (875)
++-+|=|.+..-|+.|+-+|++.=-+-| ..|.++-+.-.++-++||-||.+.+++--+|-.||.+
T Consensus 17 aa~ekRE~lE~rLR~~lE~EL~~lr~qq~~~~~~~~~~~~~~~~~L~~~LrEkEErILaLEad~~kWEqkYLEEs~mrq~ 96 (205)
T PF12240_consen 17 AACEKREQLERRLRTRLERELESLRAQQRQGNSSGSSSPSNNASNLKELLREKEERILALEADMTKWEQKYLEESAMRQF 96 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888999988885322211 1245556666788999999999999999999999865
Q ss_pred HHHhhcCCCC-----CCC-CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 647 LEVGLSMSSG-----QFS-SSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (875)
Q Consensus 647 Le~al~~~~~-----~~~-~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~ 699 (875)
=-.|...+.. .+. .|..=+..-....++|.+...-+..||..|..||.+|-+-
T Consensus 97 a~dAaa~aa~~rdttiI~~s~~~s~~~s~r~~eel~~a~~K~qemE~RIK~LhaqI~EK 155 (205)
T PF12240_consen 97 AMDAAATAAAQRDTTIINHSPSESYNSSLREEEELHMANRKCQEMENRIKALHAQIAEK 155 (205)
T ss_pred HHHHHhhhHHHHHHHHHhcCCCCCCCccccchHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 4333222111 111 2211111111557899999999999999999999988764
No 192
>PRK09039 hypothetical protein; Validated
Probab=59.00 E-value=1.2e+02 Score=34.61 Aligned_cols=18 Identities=22% Similarity=0.291 Sum_probs=11.5
Q ss_pred HHhHhhhhhHHHHHHHHH
Q 002837 583 AIQRLEITKNDLRHRIAK 600 (875)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~ 600 (875)
.|..++..=.+|+.+|+.
T Consensus 47 ~i~~~~~eL~~L~~qIa~ 64 (343)
T PRK09039 47 EISGKDSALDRLNSQIAE 64 (343)
T ss_pred HHhhHHHHHHHHHHHHHH
Confidence 456666666677777754
No 193
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=57.80 E-value=80 Score=29.49 Aligned_cols=73 Identities=19% Similarity=0.274 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 620 HERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (875)
Q Consensus 620 ~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~ 699 (875)
-+.=.+|-++...|+.+++.=+.-|..+...+......- ..+.+|++++..+=.++..||.++..+..+|...
T Consensus 28 vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~-------~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 28 VDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAG-------EDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT-------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555555555566665553221100 4567888888888888888888888888777654
No 194
>PHA02562 46 endonuclease subunit; Provisional
Probab=57.68 E-value=2.1e+02 Score=34.31 Aligned_cols=30 Identities=10% Similarity=0.224 Sum_probs=18.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 665 DSKTRAELEEIALAEADVARLKQKVAELHH 694 (875)
Q Consensus 665 p~~~~~ll~eia~~E~~v~~Le~~v~~l~~ 694 (875)
|.....|-.+|+-++.++..|+..+.++..
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~ 327 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEE 327 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666654433
No 195
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=57.50 E-value=1.4e+02 Score=31.53 Aligned_cols=102 Identities=17% Similarity=0.181 Sum_probs=54.5
Q ss_pred HHHhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 002837 582 LAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSS 661 (875)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~ 661 (875)
..|..|-.--.+++.+...--|.=+.+++- -+.|.+==..++++|..|+++|..-..-..+|..+-.+-
T Consensus 27 ~lIksLKeei~emkk~e~~~~k~m~ei~~e----N~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl------- 95 (201)
T PF13851_consen 27 ELIKSLKEEIAEMKKKEERNEKLMAEISQE----NKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARL------- 95 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 345555555555555544333333333333 223333334578999999999998888888777654311
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 662 RGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (875)
Q Consensus 662 ~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~ 694 (875)
..+-.+.+.|=-|-.+|+.-+.+||++-.+|+.
T Consensus 96 ~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~ 128 (201)
T PF13851_consen 96 KELEKELKDLKWEHEVLEQRFEKLEQERDELYR 128 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112233344444444555555555555555444
No 196
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=57.33 E-value=1.7e+02 Score=34.59 Aligned_cols=42 Identities=21% Similarity=0.382 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002837 610 ASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGL 651 (875)
Q Consensus 610 ~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al 651 (875)
+.+..|...++.....+++.+..++.+++.=+.+..+++..+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 202 (457)
T TIGR01000 161 DKSQTQNEAAEKTKAQLDQQISKTDQKLQDYQALKNAISNGT 202 (457)
T ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344555666777777777777777777777666666666643
No 197
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=57.13 E-value=2e+02 Score=28.17 Aligned_cols=59 Identities=29% Similarity=0.385 Sum_probs=28.3
Q ss_pred HHHHHhHhhhhhHHH--HHHHHHHhhhh----hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 580 EELAIQRLEITKNDL--RHRIAKEARGN----AILQASLERRKQALHERRLALEQDVSRLQEQLQ 638 (875)
Q Consensus 580 ~~~~~~~~~~~~~~~--~~~~~~~~~~n----~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~ 638 (875)
.+....++...+.|| |.+|+++|-.| -++++..-..=..+++.-..++.++..|+..++
T Consensus 19 ~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~ 83 (132)
T PF07926_consen 19 EEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAE 83 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666665 34567777666 233333332223333333344444444444443
No 198
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=56.77 E-value=56 Score=28.23 Aligned_cols=27 Identities=30% Similarity=0.542 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 613 ERRKQALHERRLALEQDVSRLQEQLQA 639 (875)
Q Consensus 613 ~~rk~~~~~~r~~LeqeV~~Lq~qL~~ 639 (875)
++|=+....+..+|+++|.+|++++.+
T Consensus 31 e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 31 ESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667788899999999999999875
No 199
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=56.62 E-value=79 Score=39.94 Aligned_cols=101 Identities=23% Similarity=0.323 Sum_probs=59.4
Q ss_pred HHHHhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 002837 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSS 660 (875)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~ 660 (875)
+...++|+..|.+|...+++--. .++ .++-+=.++|+.+..||.+|.-=.....++|..|......
T Consensus 595 ~eelE~le~eK~~Le~~L~~~~d-------~lE----~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~--- 660 (769)
T PF05911_consen 595 EEELEKLESEKEELEMELASCQD-------QLE----SLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKES--- 660 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 33455666666666655543222 222 2222335689999999999999999999999988633211
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002837 661 SRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQH 702 (875)
Q Consensus 661 ~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~~ 702 (875)
-+.+-.-+..+|+++..|-.+|..|..+|-.+|..
T Consensus 661 -------~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~ 695 (769)
T PF05911_consen 661 -------YESLETRLKDLEAEAEELQSKISSLEEELEKERAL 695 (769)
T ss_pred -------HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11222223345666666666666666666666553
No 200
>KOG3523 consensus Putative guanine nucleotide exchange factor TIM [Signal transduction mechanisms]
Probab=56.49 E-value=25 Score=42.44 Aligned_cols=86 Identities=16% Similarity=0.146 Sum_probs=48.8
Q ss_pred CCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcce--ee-----ccCCceeEEEEc-CCCCC--ceE
Q 002837 34 WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSV--VV-----REDKKLLTVLFP-DGRDG--RAF 103 (875)
Q Consensus 34 ~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV--~~-----~~~Kk~~fiIt~-~~~~g--Rty 103 (875)
+...+..|+.|-...|.+-|.+.... .......+...+.+..+... .. ....++.|.++. .+.+| ..|
T Consensus 496 k~~~~~vylfLFnD~Llitk~k~~~~--f~V~Dya~r~~l~ve~~e~~~~lp~~~~~~~~~~hlF~ltLl~N~~~~~~e~ 573 (695)
T KOG3523|consen 496 KRLSKTVYLFLFNDLLLITKKKSEGS--FQVFDYAPRSLLQVEKCEPELKLPGGANSLSSRPHLFLLTLLSNHQGRQTEL 573 (695)
T ss_pred ccccceeeeeeecceeeEeeecCCCc--eEEeeccchhhhhhhhcCcccCCCCCCcccccccceEEEehhhccCCCceee
Confidence 34467888889888888887554321 00000011112222222210 00 123446777765 22233 479
Q ss_pred EEEeCCHHHHHHHHHHHH
Q 002837 104 TLKAETSEDLYEWKTALE 121 (875)
Q Consensus 104 ~LqAdTeeE~~eWv~AI~ 121 (875)
+|.|+++.|+..|+.|+.
T Consensus 574 lL~a~s~Sd~~RWi~Al~ 591 (695)
T KOG3523|consen 574 LLSAESQSDRQRWISALR 591 (695)
T ss_pred eecCCchHHHHHHHHhcC
Confidence 999999999999999995
No 201
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=56.45 E-value=1.2e+02 Score=38.20 Aligned_cols=143 Identities=15% Similarity=0.165 Sum_probs=73.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 002837 610 ASLERRKQALHERRLALEQDVSRLQEQLQA-ERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQK 688 (875)
Q Consensus 610 ~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~-E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~ 688 (875)
..++.|......-..-|++++.+|+++|.. |..|..--.. .+.+ .+...++.+|.+|+-||..+..|+.+
T Consensus 256 ~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~-----~~~~----d~~~ea~~~l~~~~~l~~ql~~l~~~ 326 (726)
T PRK09841 256 QNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQ-----RDSV----DLNLEAKAVLEQIVNVDNQLNELTFR 326 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCC----CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555566688888888888864 3333332221 1222 13467788888888888888777766
Q ss_pred HHHHHH----------HHHHHHhhhcCCCcccchhhhcccccchhhhhcccccchhhhhhhhhhhhhcc-----cccccc
Q 002837 689 VAELHH----------QLNQQRQHHYGSLSDACDRYQNVQNHNSQQRFLQQDFDSTLAFVNHERKQRTE-----NLLGAD 753 (875)
Q Consensus 689 v~~l~~----------~l~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 753 (875)
..+|.. .|..++..-...+.....+....|..+......+.+.++.-+.-+..-+++.+ .....+
T Consensus 327 ~~~l~~~~~~~hP~v~~l~~~~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~lY~~lL~r~~e~~i~~a~~~~~ 406 (726)
T PRK09841 327 EAEISQLYKKDHPTYRALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELSISKSSAIGN 406 (726)
T ss_pred HHHHHHHhcccCchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence 655532 11111110000000111122333444444445555566665555554444433 444567
Q ss_pred hhhhcccc
Q 002837 754 WRNIKGQG 761 (875)
Q Consensus 754 ~~~~~~~~ 761 (875)
||.|-...
T Consensus 407 ~rIid~A~ 414 (726)
T PRK09841 407 VRIIDPAV 414 (726)
T ss_pred eeeccCCC
Confidence 77776643
No 202
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=56.30 E-value=1.3e+02 Score=34.76 Aligned_cols=60 Identities=30% Similarity=0.457 Sum_probs=36.1
Q ss_pred HHHHHhHhhhhhH-----HHHHHHHHHhhhh-hhhhhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 580 EELAIQRLEITKN-----DLRHRIAKEARGN-AILQASLERR-------KQALHERRLALEQDVSRLQEQLQA 639 (875)
Q Consensus 580 ~~~~~~~~~~~~~-----~~~~~~~~~~~~n-~~~q~~~~~r-------k~~~~~~r~~LeqeV~~Lq~qL~~ 639 (875)
.++..|+||..+. +...+..|||-+- |.||+--.|. |.+++..|-.|+.+.++.+++|+.
T Consensus 302 s~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec~rQ~qlaLEEKaaLrkerd~L~keLeekkreleq 374 (442)
T PF06637_consen 302 SDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAECARQTQLALEEKAALRKERDSLAKELEEKKRELEQ 374 (442)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777665 5555666665543 3466654333 346666677777777777665543
No 203
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=56.18 E-value=2.5e+02 Score=32.60 Aligned_cols=82 Identities=27% Similarity=0.462 Sum_probs=60.3
Q ss_pred CCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceee-ccCCceeEEEEcCCCCCceEEEEeCCHHHH
Q 002837 35 KSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-REDKKLLTVLFPDGRDGRAFTLKAETSEDL 113 (875)
Q Consensus 35 ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~-~~~Kk~~fiIt~~~~~gRty~LqAdTeeE~ 113 (875)
.-|++.|||+....+-||.+........ --+.|+|..|+.|.. ....++.|-|... +.+|.|.|.+..-.
T Consensus 33 ~~~~k~~~~~~~~~~~~~~d~~A~~~~~------L~~~~~LR~C~~v~e~a~q~nY~~~i~~~---~~~~tL~~~~s~Ir 103 (593)
T KOG4807|consen 33 SQWKKHWFVLTDSSLKYYRDSTAEEADE------LDGEIDLRSCTDVTEYAVQRNYGFQIHTK---DAVYTLSAMTSGIR 103 (593)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhccc------CCccccHHHHHHHHHHHHHhccceeeccc---chhhhhHHHHHHHH
Confidence 3499999999999999999876543111 123477877776432 2345566666543 48999999999999
Q ss_pred HHHHHHHHHHHh
Q 002837 114 YEWKTALELALA 125 (875)
Q Consensus 114 ~eWv~AI~~al~ 125 (875)
..|+.|+++.+.
T Consensus 104 ~~~~~A~~kT~~ 115 (593)
T KOG4807|consen 104 RNWIEALRKTVR 115 (593)
T ss_pred HHHHHHHHhccC
Confidence 999999997764
No 204
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=55.54 E-value=58 Score=37.80 Aligned_cols=69 Identities=30% Similarity=0.330 Sum_probs=41.9
Q ss_pred HhHhhhhhHHHHHHHHHHhh------------------------hhhhhhhhHHHHHHHHHH-----------HHH---H
Q 002837 584 IQRLEITKNDLRHRIAKEAR------------------------GNAILQASLERRKQALHE-----------RRL---A 625 (875)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~------------------------~n~~~q~~~~~rk~~~~~-----------~r~---~ 625 (875)
|++||..|.-||.++..+|- -=-+||+-++|-|..+.. ||. .
T Consensus 210 mdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~ 289 (552)
T KOG2129|consen 210 MDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVD 289 (552)
T ss_pred HHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 67888888888888733321 112478888776664422 111 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002837 626 LEQDVSRLQEQLQAERDLRAALEVGLS 652 (875)
Q Consensus 626 LeqeV~~Lq~qL~~E~~l~~~Le~al~ 652 (875)
.+.+-++||+.|+.|..-|.||=+-|.
T Consensus 290 ~reen~rlQrkL~~e~erRealcr~ls 316 (552)
T KOG2129|consen 290 HREENERLQRKLINELERREALCRMLS 316 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445556777777777777776665443
No 205
>PLN02372 violaxanthin de-epoxidase
Probab=55.26 E-value=36 Score=39.44 Aligned_cols=27 Identities=33% Similarity=0.416 Sum_probs=21.9
Q ss_pred CChhHHHHHhHhhhhhHHHHHHHHHHh
Q 002837 576 SSGEEELAIQRLEITKNDLRHRIAKEA 602 (875)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (875)
.|+-+--+++|||.+-.+....|.|||
T Consensus 355 sCgpep~l~~~l~~~~e~~e~~i~~e~ 381 (455)
T PLN02372 355 TCGPEPPLLERLEKDVEEGEKTIVKEA 381 (455)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 455566679999999999999999883
No 206
>cd01255 PH_TIAM TIAM Pleckstrin homology (PH) domain. TIAM Pleckstrin homology (PH) domain. TIAM (T-cell invasion and metastasis) is a guanine nucleotide exchange factor specific for RAC1. It consists of an N-terminal PH domain followed by Raf-like ras binding domain(RDB), a PDZ domain, a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. This subfamily contains the alignment of the PH domain that follows the DH domain.
Probab=53.79 E-value=91 Score=31.43 Aligned_cols=88 Identities=16% Similarity=0.273 Sum_probs=54.2
Q ss_pred CcEEEEEEEeCCeeeEecCCCCCCCCCCc---------------eeeeeeCceEeCCCcceeeccCCceeEEEEc-----
Q 002837 36 SWKKRWFILTRTSLVFFKNDPSALPQRGG---------------EVNLTLGGIDLNNSGSVVVREDKKLLTVLFP----- 95 (875)
Q Consensus 36 sWKKRWFVL~~~~L~YYKd~~~~~p~~~~---------------e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiIt~----- 95 (875)
.-.-.-||.+.--+.+||+....+.+-++ ...++.....+..... ...+.++.++|+.
T Consensus 48 e~e~~~FVFK~AVVlv~ke~~K~KkKl~~~~r~~~~~e~dp~rfr~miP~~alQVR~~n~--ad~e~~~vwEliH~kSe~ 125 (160)
T cd01255 48 ELELMCFVFKSAVVLVYKERLKQKKKLMGVSRKNATNEVDPFRFRVLIPVTALQVRASSA--ADMESNFLWELIHLKSEL 125 (160)
T ss_pred CceEEEEEecceEEEEEcCcchhhhccccccccccccccCceeEEEeeceeeeeeecCCC--cCcccceEEEEEeecccc
Confidence 33456788898888888876554332211 0112222222222111 1234555565543
Q ss_pred CCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002837 96 DGRDGRAFTLKAETSEDLYEWKTALELALA 125 (875)
Q Consensus 96 ~~~~gRty~LqAdTeeE~~eWv~AI~~al~ 125 (875)
.++..++|.|++.+.+..+..+..|+..+.
T Consensus 126 egRpE~vfqLCcS~~E~k~~flK~Irsilr 155 (160)
T cd01255 126 EGRPEKVFVLCCSTAESRNAFLKTIRSILR 155 (160)
T ss_pred cCCCcceEEEecCCHHHHHHHHHHHHHHHH
Confidence 334678999999999999999999999886
No 207
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=53.75 E-value=1.6e+02 Score=34.36 Aligned_cols=68 Identities=19% Similarity=0.210 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhcCCCcccchhhhcccccchhhhhcccccchhhhhhhhhhh
Q 002837 668 TRAELEEIALAEADVARLKQKVAELHHQL----NQQRQHHYGSLSDACDRYQNVQNHNSQQRFLQQDFDSTLAFVNHERK 743 (875)
Q Consensus 668 ~~~ll~eia~~E~~v~~Le~~v~~l~~~l----~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (875)
+-.+-.-|-.|-+||.+|..++..-+.+- -|-|.+- .... .....-|+-+++..+..-|+|-|.-.
T Consensus 248 a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee---------~~~r-een~rlQrkL~~e~erRealcr~lsE 317 (552)
T KOG2129|consen 248 AAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEE---------VDHR-EENERLQRKLINELERREALCRMLSE 317 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hhHH-HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34555567777778888777766544322 1111110 0011 11122266667778888899998654
Q ss_pred hh
Q 002837 744 QR 745 (875)
Q Consensus 744 ~~ 745 (875)
.+
T Consensus 318 se 319 (552)
T KOG2129|consen 318 SE 319 (552)
T ss_pred hh
Confidence 43
No 208
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=53.58 E-value=80 Score=35.45 Aligned_cols=81 Identities=21% Similarity=0.345 Sum_probs=50.4
Q ss_pred hHhhhhhHHHHHHHH-----------HHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 002837 585 QRLEITKNDLRHRIA-----------KEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSM 653 (875)
Q Consensus 585 ~~~~~~~~~~~~~~~-----------~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~ 653 (875)
.+||..+..|++||. .-|+||..|++.+.= =..|..|+.+|.++|.+-...-.. +
T Consensus 45 ~~l~~lq~~L~~kI~IvspAIDLIel~aaRGNt~Lesal~L--------~~~L~~eI~~f~~~l~~~~~~~e~---~--- 110 (302)
T PF05508_consen 45 KELEKLQRRLESKIKIVSPAIDLIELIAARGNTSLESALPL--------TKDLRREIDSFDERLEEAAEKEEL---S--- 110 (302)
T ss_pred HHHHHHHHHHHhhhhccccHHHHHHHHHhcCCccHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhhhh---c---
Confidence 899999999999992 668999999998752 224555666666655543321111 1
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 654 SSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAE 691 (875)
Q Consensus 654 ~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~ 691 (875)
..-+.--++|..+|.++..|=..+++
T Consensus 111 ------------~~~~~~~~~i~~V~~~ik~LL~rId~ 136 (302)
T PF05508_consen 111 ------------KSSENQKESIKKVERYIKDLLARIDD 136 (302)
T ss_pred ------------cCcchhHHHHHHHHHHHHHHHHHHHh
Confidence 11123345666667776666555554
No 209
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=53.21 E-value=1.9e+02 Score=36.89 Aligned_cols=79 Identities=19% Similarity=0.287 Sum_probs=54.6
Q ss_pred hHHHHHhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 002837 579 EEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQF 658 (875)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~ 658 (875)
+=|..|++||..+.+++.+..+= +.+...+++.+..+.+.+..|+++-.++.+++++| .+.+|+.|-.
T Consensus 517 ~~~~li~~l~~~~~~~e~~~~~~----~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~--a~~~l~~a~~------ 584 (782)
T PRK00409 517 KLNELIASLEELERELEQKAEEA----EALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKE--AQQAIKEAKK------ 584 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH------
Confidence 56778899998888888765422 23445556777777788888888888877777776 4466666543
Q ss_pred CCCCCCChhHHHHHHHHHH
Q 002837 659 SSSRGMDSKTRAELEEIAL 677 (875)
Q Consensus 659 ~~~~~lp~~~~~ll~eia~ 677 (875)
.++++|.++-.
T Consensus 585 --------~~~~~i~~lk~ 595 (782)
T PRK00409 585 --------EADEIIKELRQ 595 (782)
T ss_pred --------HHHHHHHHHHH
Confidence 45677777754
No 210
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=52.78 E-value=39 Score=29.32 Aligned_cols=60 Identities=27% Similarity=0.363 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002837 628 QDVSRLQEQLQAERDLRAALEVGLSM-SSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (875)
Q Consensus 628 qeV~~Lq~qL~~E~~l~~~Le~al~~-~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~ 701 (875)
|-++.|+++|+.|..++...|+.+.. ... + .. =++.++..+..-+++|..|+.+|..-..
T Consensus 1 q~i~~L~~~i~~E~ki~~Gae~m~~~~~t~----------~--~~--~~~~~~~~l~~s~~kI~~L~~~L~~l~~ 61 (70)
T PF02185_consen 1 QRIEELQKKIDKELKIKEGAENMLQAYSTD----------K--KK--VLSEAESQLRESNQKIELLREQLEKLQQ 61 (70)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCCH----------H--CH---HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHccC----------c--HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999998887752 110 0 00 2345566666677777777777766544
No 211
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=52.69 E-value=2.9e+02 Score=31.26 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 616 KQALHERRLALEQDVSRLQEQLQA 639 (875)
Q Consensus 616 k~~~~~~r~~LeqeV~~Lq~qL~~ 639 (875)
...++++..+|+.++.+|+....+
T Consensus 179 ~~~l~~~~~~L~~e~~~Lk~~~~e 202 (325)
T PF08317_consen 179 LPKLRERKAELEEELENLKQLVEE 202 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345667777777777777776553
No 212
>PRK09039 hypothetical protein; Validated
Probab=52.60 E-value=2.2e+02 Score=32.55 Aligned_cols=33 Identities=30% Similarity=0.400 Sum_probs=17.9
Q ss_pred HHHHhHhhhhhHHHHHHHHHHhhhhhhhhhhHH
Q 002837 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLE 613 (875)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~ 613 (875)
+.++.+|+.-=.+|-.-+.-|--.++-||..+.
T Consensus 52 ~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~ 84 (343)
T PRK09039 52 DSALDRLNSQIAELADLLSLERQGNQDLQDSVA 84 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 344555555555555555555555555555543
No 213
>PHA02562 46 endonuclease subunit; Provisional
Probab=52.08 E-value=2e+02 Score=34.50 Aligned_cols=58 Identities=16% Similarity=0.218 Sum_probs=28.4
Q ss_pred HHHHhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQA 639 (875)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~ 639 (875)
+..+..|+....+|+.++.+--..=+.++...+ +...+..+-.+|++.+..++..|..
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~-~~~~~~~~i~el~~~i~~~~~~i~~ 355 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMD-EFNEQSKKLLELKNKISTNKQSLIT 355 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666543333333333322 2333344444455555554444433
No 214
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=51.58 E-value=2.2e+02 Score=37.06 Aligned_cols=28 Identities=14% Similarity=0.255 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 671 ELEEIALAEADVARLKQKVAELHHQLNQ 698 (875)
Q Consensus 671 ll~eia~~E~~v~~Le~~v~~l~~~l~~ 698 (875)
+-.++..++.++..++.++..+..+|..
T Consensus 913 l~~~l~~l~~~~~~~~~~~~~l~~~l~e 940 (1179)
T TIGR02168 913 LRRELEELREKLAQLELRLEGLEVRIDN 940 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 215
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=51.36 E-value=39 Score=40.52 Aligned_cols=38 Identities=26% Similarity=0.242 Sum_probs=28.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 663 GMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (875)
Q Consensus 663 ~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~ 700 (875)
++-.+..++..++.-+|.++..|++++..|+.+|..-.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 135 FNGSEIERLLTEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34456677778888888888888888888888876553
No 216
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=50.35 E-value=2.4e+02 Score=36.61 Aligned_cols=18 Identities=28% Similarity=0.244 Sum_probs=10.5
Q ss_pred hhhhhHHHHHHHHHHHhh
Q 002837 834 TRLDFFKERRSQLMEQLH 851 (875)
Q Consensus 834 ~rl~f~kerrsq~~~~~~ 851 (875)
.|++|+++++.-|.+.+.
T Consensus 993 er~~~l~~q~~dL~~~~~ 1010 (1179)
T TIGR02168 993 EEYEELKERYDFLTAQKE 1010 (1179)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566666666655555443
No 217
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=48.21 E-value=3.4e+02 Score=35.44 Aligned_cols=117 Identities=13% Similarity=0.177 Sum_probs=73.6
Q ss_pred HHHHHhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 002837 580 EELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFS 659 (875)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~ 659 (875)
||-+++.|-..|..|...|.+-.+.-- -=.+++.....+..++.-+.-|+..++..|.....=-.-++..+.
T Consensus 650 dek~~~~L~~~k~rl~eel~ei~~~~~-e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~------- 721 (1141)
T KOG0018|consen 650 DEKEVDQLKEKKERLLEELKEIQKRRK-EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEID------- 721 (1141)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 688899999999999999975443111 112333334444444444555555555444332221111222222
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 002837 660 SSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQHHYGSL 707 (875)
Q Consensus 660 ~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~~~~~s~ 707 (875)
.++++.-++..+|-..|.+.-.|+.++..+...+|..=-.+-|-.
T Consensus 722 ---~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ 766 (1141)
T KOG0018|consen 722 ---EFGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVR 766 (1141)
T ss_pred ---hhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCee
Confidence 356666688889999999999999999999998888766665543
No 218
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=48.14 E-value=2.4e+02 Score=36.76 Aligned_cols=15 Identities=20% Similarity=0.284 Sum_probs=5.9
Q ss_pred HhHhhhhhHHHHHHH
Q 002837 584 IQRLEITKNDLRHRI 598 (875)
Q Consensus 584 ~~~~~~~~~~~~~~~ 598 (875)
|++++.....++.++
T Consensus 303 ~~~~~~~~~~~~~~l 317 (1164)
T TIGR02169 303 IASLERSIAEKEREL 317 (1164)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333343344444443
No 219
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=48.11 E-value=99 Score=32.35 Aligned_cols=28 Identities=18% Similarity=0.321 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 666 SKTRAELEEIALAEADVARLKQKVAELH 693 (875)
Q Consensus 666 ~~~~~ll~eia~~E~~v~~Le~~v~~l~ 693 (875)
..-.++|+++..|+.++..|+.++..+.
T Consensus 103 ~eR~~~l~~l~~l~~~~~~l~~el~~~~ 130 (188)
T PF03962_consen 103 EEREELLEELEELKKELKELKKELEKYS 130 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566788999988888888888877443
No 220
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=47.55 E-value=2.9e+02 Score=28.37 Aligned_cols=35 Identities=23% Similarity=0.385 Sum_probs=23.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 608 LQASLERRKQALHERRLALEQDVSRLQEQLQAERD 642 (875)
Q Consensus 608 ~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~ 642 (875)
+|..-+..-..++..+..|+.||++|+.+|++|+.
T Consensus 67 l~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~ 101 (177)
T PF07798_consen 67 LQNSRKSEFAELRSENEKLQREIEKLRQELREEIN 101 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34333334445666677788888888888888865
No 221
>PF11083 Streptin-Immun: Lantibiotic streptin immunity protein; InterPro: IPR021112 Streptococcal species produce a lantibiotic, streptin, in a similar manner to the production of nisin and subtilin by other lactic acid bacteria, in order to compete against competing bacteria within the environment []. The immunity protein protects the bacterium from destruction by its own lantibiotic. In general, there is little homology between the immunity proteins of different genera of bacteria.
Probab=46.85 E-value=89 Score=29.51 Aligned_cols=59 Identities=27% Similarity=0.284 Sum_probs=43.6
Q ss_pred HhHhhhhhHHHHHHHHHHhhhhhhhh----hhHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
Q 002837 584 IQRLEITKNDLRHRIAKEARGNAILQ----ASLERRKQALHER----------RLALEQDVSRLQEQLQAERD 642 (875)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~n~~~q----~~~~~rk~~~~~~----------r~~LeqeV~~Lq~qL~~E~~ 642 (875)
|.-++.+=+++|.|||.==|-=++|= ...+.||-+..+. =-++|.|+..||.||..+.+
T Consensus 1 iA~~di~l~~~~EkiatLNKmAEvLinlks~~~esrklaky~~sKLNltesitle~ve~Ei~~lQ~qL~~~ld 73 (99)
T PF11083_consen 1 IAELDIKLTQTQEKIATLNKMAEVLINLKSDDPESRKLAKYDFSKLNLTESITLEQVEKEIRELQNQLGLYLD 73 (99)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 34577888999999986666656655 5568888777665 33589999999999876654
No 222
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=46.74 E-value=2.4e+02 Score=39.29 Aligned_cols=35 Identities=23% Similarity=0.434 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002837 669 RAELEEIALAEADVARLKQKVAELHHQLNQQRQHH 703 (875)
Q Consensus 669 ~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~~~ 703 (875)
.++-++++.+.-.|..|+.++.+|...|-.+|+.+
T Consensus 1086 e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r 1120 (1930)
T KOG0161|consen 1086 EDEQAEVAQLQKQIKELEARIKELEEELEAERASR 1120 (1930)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555554443
No 223
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=46.67 E-value=7.1e+02 Score=31.47 Aligned_cols=11 Identities=45% Similarity=0.362 Sum_probs=5.9
Q ss_pred HHHHhHhhhhh
Q 002837 581 ELAIQRLEITK 591 (875)
Q Consensus 581 ~~~~~~~~~~~ 591 (875)
..+|.|||+.-
T Consensus 417 ~~a~~rLE~dv 427 (697)
T PF09726_consen 417 PDAISRLEADV 427 (697)
T ss_pred hHHHHHHHHHH
Confidence 34556666543
No 224
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=46.62 E-value=2.6e+02 Score=36.85 Aligned_cols=71 Identities=20% Similarity=0.324 Sum_probs=44.3
Q ss_pred HHhHhhhhhHHHHHHHHHHhhhhh----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 002837 583 AIQRLEITKNDLRHRIAKEARGNA----ILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMS 654 (875)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~n~----~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~ 654 (875)
..++.|+.+-.+..|+ +++|.+- .=-..++++...+++.+--|-+..++|.+++++.+.=...++.+...+
T Consensus 364 ~~~k~e~~~~~~~e~~-~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~ 438 (1293)
T KOG0996|consen 364 EVEKNEAVKKEIKERA-KELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKA 438 (1293)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhh
Confidence 3445555555554443 3344221 111234666666777777788889999999999888888888776544
No 225
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=46.51 E-value=3e+02 Score=27.29 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002837 677 LAEADVARLKQKVAELHHQLN 697 (875)
Q Consensus 677 ~~E~~v~~Le~~v~~l~~~l~ 697 (875)
..+.|+-+.|.++..|+.+|.
T Consensus 130 q~~~e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 130 QYEHELRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 455666666666666666654
No 226
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=46.38 E-value=2.3e+02 Score=35.06 Aligned_cols=99 Identities=18% Similarity=0.249 Sum_probs=55.3
Q ss_pred HHHhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 002837 582 LAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSS 661 (875)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~ 661 (875)
..|+.|+....+++.+|++--..=..+ ..+-..+.+....|+.++.+++++..+...+..+++.|
T Consensus 421 e~i~~l~e~l~~l~~~l~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 485 (650)
T TIGR03185 421 EQIAQLLEELGEAQNELFRSEAEIEEL----LRQLETLKEAIEALRKTLDEKTKQKINAFELERAITIA----------- 485 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH-----------
Confidence 367777777777777776322221122 22223344444556666666666665555555555442
Q ss_pred CCCChhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 002837 662 RGMDSKTRAELEEIA--LAEADVARLKQKVAELHHQLNQQ 699 (875)
Q Consensus 662 ~~lp~~~~~ll~eia--~~E~~v~~Le~~v~~l~~~l~~~ 699 (875)
.+++++|.++. +.+.-+..||..+.+...+|.+.
T Consensus 486 ----~~~~~~l~~~~~~l~~~~~~~le~~~~~~f~~l~~k 521 (650)
T TIGR03185 486 ----DKAKKTLKEFREKLLERKLQQLEEEITKSFKKLMRK 521 (650)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 23455665543 34444666777777777777654
No 227
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=46.36 E-value=19 Score=44.72 Aligned_cols=43 Identities=21% Similarity=0.404 Sum_probs=35.5
Q ss_pred cCCceeEEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHhhC
Q 002837 85 EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (875)
Q Consensus 85 ~~Kk~~fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~~a 127 (875)
..+.+.|++.+.....-.|.|.|++++++.+|+++|+++...+
T Consensus 871 n~~~~vf~l~~~~~~~~~~~~aadsqEe~~eW~k~i~E~t~~a 913 (1267)
T KOG1264|consen 871 NQKSFVFILEPKWQGKPPVEFAADSQEELFEWFKSIREITWKA 913 (1267)
T ss_pred CCcceEEEechhhhcCCceEEecCchHHHHHHHHHHHHHHHHh
Confidence 3455788888776666789999999999999999999987643
No 228
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=46.29 E-value=2.3e+02 Score=32.00 Aligned_cols=33 Identities=18% Similarity=0.270 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 613 ERRKQALHERRLALEQDVSRLQEQLQAERDLRA 645 (875)
Q Consensus 613 ~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~ 645 (875)
++.+..+.....+||.+.++|+++-.+.-..+.
T Consensus 70 E~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n 102 (314)
T PF04111_consen 70 EKEREELDQELEELEEELEELDEEEEEYWREYN 102 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555566666665544443333333
No 229
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=46.26 E-value=3.1e+02 Score=35.84 Aligned_cols=17 Identities=24% Similarity=0.188 Sum_probs=7.9
Q ss_pred cHHHHHHHHHHHhcCCc
Q 002837 181 PSFLEKALRFLEKFGTK 197 (875)
Q Consensus 181 P~iL~~~i~~Le~~Gl~ 197 (875)
|.-+..+..++...|+.
T Consensus 116 ~~~~~~~~~~l~~~~~~ 132 (1164)
T TIGR02169 116 RVRLSEIHDFLAAAGIY 132 (1164)
T ss_pred cccHHHHHHHHHHcCCC
Confidence 33344444555555543
No 230
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=46.18 E-value=1.2e+02 Score=37.17 Aligned_cols=71 Identities=24% Similarity=0.404 Sum_probs=44.1
Q ss_pred HHHhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH-----H-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002837 582 LAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHE-----R-RLALEQDVSRLQEQLQAERDLRAALEVGLS 652 (875)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~-----~-r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~ 652 (875)
.-++||+.--.+|+..|-.-=+.+..|-+.|++=+...+. + =.+++.++.+|++.|+++......|++=|.
T Consensus 429 ~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~ 505 (652)
T COG2433 429 ETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLA 505 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666666666655556666666666543333321 1 123777888888888888877777776553
No 231
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=46.15 E-value=3.3e+02 Score=36.32 Aligned_cols=20 Identities=30% Similarity=0.416 Sum_probs=13.3
Q ss_pred HHHhhhhhhHHHHHHHHHHH
Q 002837 830 VELTTRLDFFKERRSQLMEQ 849 (875)
Q Consensus 830 ~~lt~rl~f~kerrsq~~~~ 849 (875)
-++.-|++||+..+..|.+.
T Consensus 973 e~~~~r~~~l~~~~~dl~~a 992 (1163)
T COG1196 973 EEVEERYEELKSQREDLEEA 992 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55677777777776665544
No 232
>PRK02224 chromosome segregation protein; Provisional
Probab=46.08 E-value=2.6e+02 Score=35.63 Aligned_cols=32 Identities=22% Similarity=0.301 Sum_probs=17.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 608 LQASLERRKQALHERRLALEQDVSRLQEQLQA 639 (875)
Q Consensus 608 ~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~ 639 (875)
..+.++.++..+..+...|++....++.+|.+
T Consensus 308 ~~~~l~~~~~~l~~k~~el~~~l~~~~~~l~~ 339 (880)
T PRK02224 308 DAEAVEARREELEDRDEELRDRLEECRVAAQA 339 (880)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555666666555544443
No 233
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=46.06 E-value=1.9e+02 Score=28.58 Aligned_cols=67 Identities=19% Similarity=0.334 Sum_probs=0.0
Q ss_pred hHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 002837 585 QRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGM 664 (875)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~l 664 (875)
+.|..+|.+|..||. .|..+=.+..+.-.+.+.||..++.-+.
T Consensus 57 ~~l~~tKkhLsqRId-----------~vd~klDe~~ei~~~i~~eV~~v~~dv~-------------------------- 99 (126)
T PF07889_consen 57 ESLSSTKKHLSQRID-----------RVDDKLDEQKEISKQIKDEVTEVREDVS-------------------------- 99 (126)
T ss_pred HHHHHHHHHHHHHHH-----------HHHhhHHHHHHHHHHHHHHHHHHHhhHH--------------------------
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 665 DSKTRAELEEIALAEADVARLKQKVAELH 693 (875)
Q Consensus 665 p~~~~~ll~eia~~E~~v~~Le~~v~~l~ 693 (875)
..=.+|..+...|..||.++.+|.
T Consensus 100 -----~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 100 -----QIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHh
No 234
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=45.99 E-value=4.8e+02 Score=29.53 Aligned_cols=47 Identities=28% Similarity=0.292 Sum_probs=24.8
Q ss_pred HHHHhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQE 635 (875)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~ 635 (875)
+.+.+.+|.++.|.+.-..++.+-|.++ ..++++..+|+.+|..|++
T Consensus 147 ~~L~~~~~~l~~D~~~L~~~~~~l~~~~--------~~l~~~~~~L~~e~~~L~~ 193 (312)
T smart00787 147 EGLDENLEGLKEDYKLLMKELELLNSIK--------PKLRDRKDALEEELRQLKQ 193 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555444444444443 3445556666666666554
No 235
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=45.85 E-value=3.1e+02 Score=29.57 Aligned_cols=42 Identities=17% Similarity=0.330 Sum_probs=27.1
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 603 RGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLR 644 (875)
Q Consensus 603 ~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~ 644 (875)
|-...||+-..+|-...+.-+..+|+.+..++..++.+..-+
T Consensus 45 ~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v~~~~~~~ 86 (247)
T PF06705_consen 45 KLEKALEAEVKRRVESNKKLQSKFEEQINNMQERVENQISEK 86 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666666666677777777777666665544
No 236
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=45.83 E-value=3.6e+02 Score=29.66 Aligned_cols=21 Identities=29% Similarity=0.408 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002837 678 AEADVARLKQKVAELHHQLNQ 698 (875)
Q Consensus 678 ~E~~v~~Le~~v~~l~~~l~~ 698 (875)
|=+.|-+|+.+.-+||+.|.-
T Consensus 162 llesvqRLkdEardlrqelav 182 (333)
T KOG1853|consen 162 LLESVQRLKDEARDLRQELAV 182 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 335577888888888887753
No 237
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=45.66 E-value=3.3e+02 Score=30.30 Aligned_cols=35 Identities=23% Similarity=0.514 Sum_probs=20.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 608 LQASLERRKQALHERRLALEQDVSRLQEQLQAERD 642 (875)
Q Consensus 608 ~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~ 642 (875)
++...+...+.+.+....+|..+..|+++|+.|+.
T Consensus 223 l~e~~~~~~~~le~~~~~~ee~~~~L~ekme~e~~ 257 (297)
T PF02841_consen 223 LEEKQKEQEQMLEQQERSYEEHIKQLKEKMEEERE 257 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444455555666666667777777766664
No 238
>KOG3520 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=45.11 E-value=33 Score=44.56 Aligned_cols=45 Identities=18% Similarity=0.339 Sum_probs=37.2
Q ss_pred cCCceeEEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHhhCCc
Q 002837 85 EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPS 129 (875)
Q Consensus 85 ~~Kk~~fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~~aP~ 129 (875)
.++|-||+|+.....-..|-|.|.|..|++.|++.|+.++...|.
T Consensus 682 td~ka~FlIs~s~~~pqmYEL~a~T~serntW~~li~~~v~s~~~ 726 (1167)
T KOG3520|consen 682 TDEKAFFLISMSDQGPEMYELVAQSKSERNTWIQLIQDAVASCPR 726 (1167)
T ss_pred ccccceEEEecCCCCCeeEEEecCCHHHHHHHHHHHHHHHHhCCc
Confidence 467778888765444578999999999999999999999986544
No 239
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=45.00 E-value=1.5e+02 Score=30.67 Aligned_cols=30 Identities=17% Similarity=0.170 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 610 ASLERRKQALHERRLALEQDVSRLQEQLQA 639 (875)
Q Consensus 610 ~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~ 639 (875)
+.++.|..-+.+++..|++.+++|+++|..
T Consensus 81 ~t~~~R~~lLe~~~~~l~~ri~eLe~~l~~ 110 (175)
T PRK13182 81 NISSVDFEQLEAQLNTITRRLDELERQLQQ 110 (175)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567778888888888888888877653
No 240
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=44.76 E-value=2.7e+02 Score=34.11 Aligned_cols=105 Identities=16% Similarity=0.215 Sum_probs=65.3
Q ss_pred hHHHHHhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 002837 579 EEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDV-SRLQEQLQAERDLRAALEVGLSMSSGQ 657 (875)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV-~~Lq~qL~~E~~l~~~Le~al~~~~~~ 657 (875)
+=+..|.||+....+++.+|..-+..|..==...-.+-+.+.++-.+|..|+ +-|+... +..+...|..|..
T Consensus 11 dl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~~~--~~~i~~~l~~a~~----- 83 (593)
T PF06248_consen 11 DLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQSEI--ENEIQPQLRDAAE----- 83 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhc--cchhHHHHHHHHH-----
Confidence 3467899999999999999988877776633333455667788888888888 4444333 3334555555443
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 658 FSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (875)
Q Consensus 658 ~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~ 700 (875)
+.+.|-.|++..+.-+.-|| ++..++.+|.+-+
T Consensus 84 ---------e~~~L~~eL~~~~~~l~~L~-~L~~i~~~l~~~~ 116 (593)
T PF06248_consen 84 ---------ELQELKRELEENEQLLEVLE-QLQEIDELLEEVE 116 (593)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 33455555555555544454 5566666664443
No 241
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=44.70 E-value=4.4e+02 Score=32.18 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=18.0
Q ss_pred HHHHhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHH
Q 002837 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQAL 619 (875)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~ 619 (875)
+..+++.+--+.+|......=-+.++.||..+++-+..|
T Consensus 142 Q~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL 180 (546)
T PF07888_consen 142 QNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAEL 180 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566666444333333444444444433333
No 242
>PLN02678 seryl-tRNA synthetase
Probab=44.46 E-value=63 Score=38.32 Aligned_cols=74 Identities=14% Similarity=0.149 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 621 ERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (875)
Q Consensus 621 ~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~ 700 (875)
++-.+|.++-.+|+.+++.=+.-|..+...+.... .-...+.+|++++..|-++|..||.++..+..+|.+..
T Consensus 33 d~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k-------~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~ 105 (448)
T PLN02678 33 DEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLK-------IAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKL 105 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555553200 00134567777788888888888888888877777654
Q ss_pred h
Q 002837 701 Q 701 (875)
Q Consensus 701 ~ 701 (875)
.
T Consensus 106 ~ 106 (448)
T PLN02678 106 K 106 (448)
T ss_pred H
Confidence 4
No 243
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=43.89 E-value=4.7e+02 Score=30.45 Aligned_cols=94 Identities=27% Similarity=0.302 Sum_probs=60.8
Q ss_pred HhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 002837 586 RLEITKNDLRHRIAKEARGNAILQASLERRKQAL---HERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSR 662 (875)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~---~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~ 662 (875)
|.|..-..|+..|..-+++|+-||..-..-.+.+ .+-+..-++|-..-..|||.|-
T Consensus 282 Kveelar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec--------------------- 340 (442)
T PF06637_consen 282 KVEELARSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAEC--------------------- 340 (442)
T ss_pred HHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 4555566788999999999999886522222221 2222222222222222333332
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002837 663 GMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQH 702 (875)
Q Consensus 663 ~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~~ 702 (875)
..+++-.|+|-|.|..+--.|++++.+.+.+|-|.+.+
T Consensus 341 --~rQ~qlaLEEKaaLrkerd~L~keLeekkreleql~~q 378 (442)
T PF06637_consen 341 --ARQTQLALEEKAALRKERDSLAKELEEKKRELEQLKMQ 378 (442)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23667889999999999999999999999999888763
No 244
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=43.68 E-value=3.4e+02 Score=29.38 Aligned_cols=28 Identities=18% Similarity=0.131 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 670 AELEEIALAEADVARLKQKVAELHHQLN 697 (875)
Q Consensus 670 ~ll~eia~~E~~v~~Le~~v~~l~~~l~ 697 (875)
.|=-|.+.||+..-+|+-+|.+|+.++.
T Consensus 174 ~le~E~s~LeE~~~~l~~ev~~L~~r~~ 201 (290)
T COG4026 174 RLEVENSRLEEMLKKLPGEVYDLKKRWD 201 (290)
T ss_pred HHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence 3334445555555555555555555443
No 245
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=43.55 E-value=2.2e+02 Score=37.63 Aligned_cols=77 Identities=26% Similarity=0.322 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 619 LHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQ 698 (875)
Q Consensus 619 ~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~ 698 (875)
++..-..+..+|.+||.+|+.|++-+..+.+-|. . ++-..+--++|.....++..+..++.++..
T Consensus 747 l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~~eLs-s--------------q~~~~~t~~~Ekq~~~~~~~l~~~K~~~e~ 811 (1317)
T KOG0612|consen 747 LRRSKDQLITEVLKLQSMLEQEISKRLSLQRELK-S--------------QEQEVNTKMLEKQLKKLLDELAELKKQLEE 811 (1317)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhh-h--------------HHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456888999999999999999999998775 1 232233378888888888888888888888
Q ss_pred HHhhhcCCCccc
Q 002837 699 QRQHHYGSLSDA 710 (875)
Q Consensus 699 ~~~~~~~s~~~~ 710 (875)
+..+-.|.-.+.
T Consensus 812 ~~~q~~~~~~~~ 823 (1317)
T KOG0612|consen 812 ENAQLRGLNRSA 823 (1317)
T ss_pred HHHHhhcccccc
Confidence 877666654433
No 246
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=43.41 E-value=31 Score=41.50 Aligned_cols=84 Identities=18% Similarity=0.226 Sum_probs=58.1
Q ss_pred CCCcEEEEEEEeC---CeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEEEEcCCCCCceEEEEeCCH
Q 002837 34 WKSWKKRWFILTR---TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETS 110 (875)
Q Consensus 34 ~ksWKKRWFVL~~---~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiIt~~~~~gRty~LqAdTe 110 (875)
.+.|+.-|++.-. ..++.|..+.+.. ....+++.+|.+...+.+. ..+..++|.++.. ...++|.|+++
T Consensus 510 ~~~g~~a~~~vP~~d~~~~~~Yg~~qDv~----a~~~iPl~~~~v~~pe~~~-~~D~~~~~k~~~s---~~~~~~~a~~~ 581 (623)
T KOG4424|consen 510 GKTGILAWSVVPKSDPLVDYSYGSPQDVR----AQATIPLPGVEVTIPEFVR-REDLFHVFKLVQS---HLSWHLAADDE 581 (623)
T ss_pred CccceeeeeeccCCCCccccccCCccccc----cccccccCccccCCCcccc-cchhcchhhhhhh---cceeeeccCCH
Confidence 4679999998854 3788888777643 2345677777776433321 2233344555543 36899999999
Q ss_pred HHHHHHHHHHHHHHh
Q 002837 111 EDLYEWKTALELALA 125 (875)
Q Consensus 111 eE~~eWv~AI~~al~ 125 (875)
+-.+.|++.|.-|+.
T Consensus 582 q~qq~wl~~l~~A~~ 596 (623)
T KOG4424|consen 582 QLQQRWLEVLLLAVS 596 (623)
T ss_pred HHHHHHHHHHHhhhc
Confidence 999999999988875
No 247
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=43.30 E-value=1.9e+02 Score=31.90 Aligned_cols=26 Identities=31% Similarity=0.493 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 673 EEIALAEADVARLKQKVAELHHQLNQ 698 (875)
Q Consensus 673 ~eia~~E~~v~~Le~~v~~l~~~l~~ 698 (875)
.+|..+|++|..|+..|..|+.+...
T Consensus 200 e~i~el~e~I~~L~~eV~~L~~~~~~ 225 (258)
T PF15397_consen 200 EEIDELEEEIPQLRAEVEQLQAQAQD 225 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 35566666666666666666665553
No 248
>PRK10884 SH3 domain-containing protein; Provisional
Probab=43.14 E-value=2.6e+02 Score=29.80 Aligned_cols=29 Identities=21% Similarity=0.166 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 671 ELEEIALAEADVARLKQKVAELHHQLNQQ 699 (875)
Q Consensus 671 ll~eia~~E~~v~~Le~~v~~l~~~l~~~ 699 (875)
|-+|-+.|.+++..+.+++..|..++...
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555554443
No 249
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=43.10 E-value=5.5e+02 Score=32.31 Aligned_cols=106 Identities=16% Similarity=0.076 Sum_probs=56.8
Q ss_pred CChhHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhhhcCCCcc------------------cc
Q 002837 664 MDSKTRAELEEIALAEAD--------------VARLKQKVAELHHQLNQQRQHHYGSLSD------------------AC 711 (875)
Q Consensus 664 lp~~~~~ll~eia~~E~~--------------v~~Le~~v~~l~~~l~~~~~~~~~s~~~------------------~~ 711 (875)
+.+..++|..+++.+|.+ |..|+.++.+|+.++.+|...-..+... ..
T Consensus 286 ~~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~ 365 (754)
T TIGR01005 286 LEDLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLK 365 (754)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888888888864 5667788888888887766653332211 11
Q ss_pred hhhhcccccchhhhhcccccchhhhhhhhhhhhhcc-----cccccchhhhccccccCCCCCC
Q 002837 712 DRYQNVQNHNSQQRFLQQDFDSTLAFVNHERKQRTE-----NLLGADWRNIKGQGLATGSSNR 769 (875)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 769 (875)
.+-...|..+.+...++.+.++.-..-.-.-.+..+ .....+||.|-....+..+..|
T Consensus 366 ~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~~~~~~~~~~vi~~A~~P~~P~~P 428 (754)
T TIGR01005 366 AASAQAGEQQVDLDALQRDAAAKRQLYESYLTNYRQAASRQNYVPVDARVASPASVPSEPYFP 428 (754)
T ss_pred HHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcEEeccCcCCCCCCCC
Confidence 111122333444444444555443322222222222 5566778877776555555444
No 250
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=43.04 E-value=1.5e+02 Score=32.59 Aligned_cols=57 Identities=21% Similarity=0.300 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 614 RRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELH 693 (875)
Q Consensus 614 ~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~ 693 (875)
|+|.+...+|.-+=+-+++|+++- +.|..+..-|+.++.+|..+|.+++
T Consensus 213 rnreaa~Kcr~rkLdrisrLEdkv-------------------------------~~lk~~n~~L~~~l~~l~~~v~e~k 261 (279)
T KOG0837|consen 213 RNREAASKCRKRKLDRISRLEDKV-------------------------------KTLKIYNRDLASELSKLKEQVAELK 261 (279)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhh-------------------------------hhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 455666666666666666666542 3555566667888888888888888
Q ss_pred HHHHHHHh
Q 002837 694 HQLNQQRQ 701 (875)
Q Consensus 694 ~~l~~~~~ 701 (875)
+++-+...
T Consensus 262 ~~V~~hi~ 269 (279)
T KOG0837|consen 262 QKVMEHIH 269 (279)
T ss_pred HHHHHHHh
Confidence 87766654
No 251
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=42.75 E-value=20 Score=43.09 Aligned_cols=34 Identities=18% Similarity=0.358 Sum_probs=29.4
Q ss_pred eeEEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 002837 89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (875)
Q Consensus 89 ~~fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al 124 (875)
+||+|... .|.++.|.|.+.+|++.||+||+.-+
T Consensus 446 e~F~IVs~--tgqtWhFeAtt~EERdaWvQai~sqI 479 (749)
T KOG0705|consen 446 ECFEIVSN--TGQTWHFEATTYEERDAWVQAIQSQI 479 (749)
T ss_pred ceEEEecc--ccchhhhhhcchhhHHHHHHHHHHHH
Confidence 48888754 48999999999999999999999865
No 252
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=42.66 E-value=1.3e+02 Score=35.36 Aligned_cols=72 Identities=19% Similarity=0.282 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002837 623 RLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (875)
Q Consensus 623 r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~ 701 (875)
-.+|.++-.+|+.+++.=+.-|..+.+.+..... -...+.+|++++..|-+++..||+++..+..++.+...
T Consensus 30 i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~-------~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T PRK05431 30 LLELDEERRELQTELEELQAERNALSKEIGQAKR-------KGEDAEALIAEVKELKEEIKALEAELDELEAELEELLL 101 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555532100 01245678899999999999999999998888888654
No 253
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=42.11 E-value=4e+02 Score=27.28 Aligned_cols=37 Identities=16% Similarity=0.209 Sum_probs=19.1
Q ss_pred HHHhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHH
Q 002837 582 LAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQA 618 (875)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~ 618 (875)
..+..++..-++|+..+..+-+.++.+++.++.-+..
T Consensus 81 ~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~ 117 (191)
T PF04156_consen 81 GELSELQQQLQQLQEELDQLQERIQELESELEKLKED 117 (191)
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555443333
No 254
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=42.08 E-value=1.1e+02 Score=29.72 Aligned_cols=21 Identities=38% Similarity=0.504 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002837 673 EEIALAEADVARLKQKVAELH 693 (875)
Q Consensus 673 ~eia~~E~~v~~Le~~v~~l~ 693 (875)
.||..|+..|..||.++..|.
T Consensus 96 ~ev~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 96 EEIEALSAKIEQLAVQVEELR 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 356666777777777777664
No 255
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=42.07 E-value=3.8e+02 Score=35.86 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=19.5
Q ss_pred hHHHHhhhhhhHHHHHHHHHHHhh
Q 002837 828 ALVELTTRLDFFKERRSQLMEQLH 851 (875)
Q Consensus 828 ~l~~lt~rl~f~kerrsq~~~~~~ 851 (875)
.+.++...+.-++.+|.+++++|+
T Consensus 896 ~~~~~~~~~~~~~~~~~~l~~~l~ 919 (1201)
T PF12128_consen 896 SVDERLRDLEDLLQRRKRLREELK 919 (1201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888889999988888886
No 256
>PF14992 TMCO5: TMCO5 family
Probab=42.06 E-value=1.4e+02 Score=33.24 Aligned_cols=31 Identities=19% Similarity=0.262 Sum_probs=22.4
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 662 RGMDSKTRAELEEIALAEADVARLKQKVAEL 692 (875)
Q Consensus 662 ~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l 692 (875)
...-.+.+-+++++|-+|.+++++|......
T Consensus 112 q~sk~~lqql~~~~~~qE~ei~kve~d~~~v 142 (280)
T PF14992_consen 112 QFSKNKLQQLLESCASQEKEIAKVEDDYQQV 142 (280)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334677888888888888888887755544
No 257
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=41.87 E-value=62 Score=38.98 Aligned_cols=54 Identities=30% Similarity=0.435 Sum_probs=45.5
Q ss_pred HhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 002837 586 RLEITKNDLRHRIAKEARGNAILQASLERRKQA---LHERRLALEQDVSRLQEQLQA 639 (875)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~---~~~~r~~LeqeV~~Lq~qL~~ 639 (875)
-|-+.|+||-.++.+=--+|-|||.-++.+|++ |.++--+||.|+++++..+..
T Consensus 319 ALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ 375 (832)
T KOG2077|consen 319 ALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAED 375 (832)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366789999999998889999999999999884 678888889888888877643
No 258
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=41.72 E-value=2.7e+02 Score=36.80 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=19.5
Q ss_pred chhhHHHHhhhhhhHHHHHHHHHHHhh
Q 002837 825 ASSALVELTTRLDFFKERRSQLMEQLH 851 (875)
Q Consensus 825 ~~s~l~~lt~rl~f~kerrsq~~~~~~ 851 (875)
..+...+|+.+|.=+...|.-+.++|-
T Consensus 754 ~~~~vl~Lq~~LEqe~~~r~~~~~eLs 780 (1317)
T KOG0612|consen 754 LITEVLKLQSMLEQEISKRLSLQRELK 780 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHhh
Confidence 446667788888877777777777764
No 259
>PRK04863 mukB cell division protein MukB; Provisional
Probab=41.50 E-value=2.1e+02 Score=39.16 Aligned_cols=78 Identities=13% Similarity=0.151 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 622 RRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (875)
Q Consensus 622 ~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~ 699 (875)
+-..|++....|+..|+.++...+.|..+-......+..+..+..-..+.=++|.-|++.+..+=+.-..++.++.|-
T Consensus 514 ~~~~~~~~~~~l~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL 591 (1486)
T PRK04863 514 QLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQL 591 (1486)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345588999999999999999999999876533222222233333333333334444444444444444555544443
No 260
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.40 E-value=3.6e+02 Score=32.01 Aligned_cols=127 Identities=19% Similarity=0.289 Sum_probs=78.1
Q ss_pred cCCCChhHHHHHhHhhhhhHHHHHHHHHHhhh-----hhhhhhhHHHHHH-------HHH-HHHHHHHHHHHHHHHHHHH
Q 002837 573 SIDSSGEEELAIQRLEITKNDLRHRIAKEARG-----NAILQASLERRKQ-------ALH-ERRLALEQDVSRLQEQLQA 639 (875)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----n~~~q~~~~~rk~-------~~~-~~r~~LeqeV~~Lq~qL~~ 639 (875)
-|+--.+-|+-.++|+..-..++.+|-.=.+- =+.+|..+.=|+. +.+ .+-.+|||||.-+-++.+.
T Consensus 284 l~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e~~~IqeleqdL~a~~eei~~ 363 (521)
T KOG1937|consen 284 LIEALDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETEDEEIRRIQELEQDLEAVDEEIES 363 (521)
T ss_pred HHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555566777788887777777666322211 0112222211111 011 2335699999988888888
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 640 ERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (875)
Q Consensus 640 E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~ 700 (875)
-..+++-|-++|..-+-.++ --..-.-.+|+..+|--.++||.+.=..--+|+.|++..-
T Consensus 364 ~eel~~~Lrsele~lp~dv~-rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~s 423 (521)
T KOG1937|consen 364 NEELAEKLRSELEKLPDDVQ-RKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSES 423 (521)
T ss_pred hHHHHHHHHHHHhcCCchhH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888763211111 0112234678999999999999998888888888877653
No 261
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=41.29 E-value=2.7e+02 Score=27.48 Aligned_cols=74 Identities=26% Similarity=0.392 Sum_probs=37.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 002837 607 ILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLK 686 (875)
Q Consensus 607 ~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le 686 (875)
.+++.++...++.......+++++..++++|+.+.. .++ +...+++-.|+...+.+ |.
T Consensus 36 ~~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~~~~~--------------~ls-----~~~~~~~~~~l~~~~~~---l~ 93 (158)
T PF03938_consen 36 DAQAKLQEKFKALQKELQAKQKELQKLQQKLQSQKA--------------TLS-----EEERQKRQQELQQKEQE---LQ 93 (158)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS------------------S-----SHHHHHHHHHHHHHHHH---HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------------ccc-----hhHHHHHHHHHHHHHHH---HH
Confidence 344555555555555555666666666666665533 011 23334444444444444 55
Q ss_pred HHHHHHHHHHHHHHhh
Q 002837 687 QKVAELHHQLNQQRQH 702 (875)
Q Consensus 687 ~~v~~l~~~l~~~~~~ 702 (875)
+....+..+|.++++.
T Consensus 94 ~~~~~~~~~l~~~~~~ 109 (158)
T PF03938_consen 94 QFQQQAQQQLQQEEQE 109 (158)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555556666666554
No 262
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=41.23 E-value=1.7e+02 Score=30.10 Aligned_cols=99 Identities=14% Similarity=0.214 Sum_probs=57.1
Q ss_pred HHhHhhhhhHHHHHHHHHHh-hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhcCCCCC
Q 002837 583 AIQRLEITKNDLRHRIAKEA-RGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAA----LEVGLSMSSGQ 657 (875)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~-~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~----Le~al~~~~~~ 657 (875)
....+++.=.+|+.-|..-- ..=+.+++..++=+..+..-+..|.+|+.+|+.-++-+.+++.. ....+...
T Consensus 52 ~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~k--- 128 (177)
T PF07798_consen 52 QEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELK--- 128 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---
Confidence 34444444444444442111 11144666667777777778888888898888877777665543 12222211
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 658 FSSSRGMDSKTRAELEEIALAEADVARLKQKVA 690 (875)
Q Consensus 658 ~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~ 690 (875)
|-.--..+-.||+-|..+|..++.++.
T Consensus 129 ------i~e~~~ki~~ei~~lr~~iE~~K~~~l 155 (177)
T PF07798_consen 129 ------IQELNNKIDTEIANLRTEIESLKWDTL 155 (177)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111123456778889999888766643
No 263
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=40.83 E-value=4.2e+02 Score=27.18 Aligned_cols=100 Identities=20% Similarity=0.266 Sum_probs=56.3
Q ss_pred HhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC--ChhHHHHHHHHHHH
Q 002837 601 EARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGM--DSKTRAELEEIALA 678 (875)
Q Consensus 601 ~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~l--p~~~~~ll~eia~~ 678 (875)
-.+-+..||+.|...+.++.+.=.+|.+-..+.+...+.-...+..|..-+. ..++|++-.++ -...=.+..+++.+
T Consensus 13 r~R~~~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~ri~~m~~-gg~~f~i~~~~~~~~~r~~l~~~~~~~ 91 (158)
T PF09486_consen 13 RRRRERRLRARLAAQRRALAAAEAELAEQQAEVEAARQRLRAHDARIDAMMT-GGAPFSIDEYLALRRYRDVLEERVRAA 91 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677777776666666555555555444444444444444444444333 12233322222 22233566778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 002837 679 EADVARLKQKVAELHHQLNQQRQ 701 (875)
Q Consensus 679 E~~v~~Le~~v~~l~~~l~~~~~ 701 (875)
|.++..|++.|..-+.+|...+.
T Consensus 92 e~~~a~l~~~l~~~~~~ia~~~r 114 (158)
T PF09486_consen 92 EAELAALRQALRAAEDEIAATRR 114 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888887777765543
No 264
>PRK02224 chromosome segregation protein; Provisional
Probab=40.67 E-value=3.3e+02 Score=34.74 Aligned_cols=24 Identities=33% Similarity=0.308 Sum_probs=14.3
Q ss_pred hHHHHhhhhhhHHHHHHHHHHHhhhc
Q 002837 828 ALVELTTRLDFFKERRSQLMEQLHNL 853 (875)
Q Consensus 828 ~l~~lt~rl~f~kerrsq~~~~~~~~ 853 (875)
-|-+-|+.||. .+|..+++-|+.+
T Consensus 816 ilDEp~~~lD~--~~~~~~~~~l~~~ 839 (880)
T PRK02224 816 ILDEPTVFLDS--GHVSQLVDLVESM 839 (880)
T ss_pred EecCCcccCCH--HHHHHHHHHHHHH
Confidence 35556666664 4566666666555
No 265
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=40.39 E-value=2.8e+02 Score=35.08 Aligned_cols=55 Identities=25% Similarity=0.314 Sum_probs=35.4
Q ss_pred HhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 586 RLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLR 644 (875)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~ 644 (875)
+|-..|.++|.-+ +|+|-||. .+...+..|...|..++.||.+||+.+..++.+-
T Consensus 327 kltrqkadirc~L-lEarrk~e---gfddk~~eLEKkrd~al~dvr~i~e~k~nve~el 381 (1265)
T KOG0976|consen 327 KLTRQKADIRCAL-LEARRKAE---GFDDKLNELEKKRDMALMDVRSIQEKKENVEEEL 381 (1265)
T ss_pred HHHHHHHHHHHHH-HHHHHhhc---chhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3333344444332 45555553 3455566788889999999999999998765543
No 266
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=40.19 E-value=3.1e+02 Score=37.01 Aligned_cols=123 Identities=11% Similarity=0.182 Sum_probs=67.5
Q ss_pred CcccCCCChhHHHHHhHhhhhhHHHHHHHHH---Hhhhh------hhhhhhHHHHHH----------HHHHHHHHHHHHH
Q 002837 570 SVESIDSSGEEELAIQRLEITKNDLRHRIAK---EARGN------AILQASLERRKQ----------ALHERRLALEQDV 630 (875)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~n------~~~q~~~~~rk~----------~~~~~r~~LeqeV 630 (875)
.+++++....+...|.|+...-.+|+.+|.. ++.+. .-||..+..-+. .+.+.+..++.++
T Consensus 780 ~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI 859 (1311)
T TIGR00606 780 EEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQI 859 (1311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666777777777777777742 22211 223433322222 2244566677777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 631 SRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (875)
Q Consensus 631 ~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~ 699 (875)
.+||.++.+-.+.+..|..++... ..|=+...+|-.+|+.+.++|..+++++..|...+...
T Consensus 860 ~~Lq~ki~el~~~klkl~~~l~~r-------~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~ 921 (1311)
T TIGR00606 860 QHLKSKTNELKSEKLQIGTNLQRR-------QQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKD 921 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 788777766666666666655421 12333445666666666666666666665555544433
No 267
>PRK12704 phosphodiesterase; Provisional
Probab=40.03 E-value=5.2e+02 Score=31.39 Aligned_cols=38 Identities=13% Similarity=0.251 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccc
Q 002837 673 EEIALAEADVARLKQKVAELHHQLNQQRQHHYGSLSDA 710 (875)
Q Consensus 673 ~eia~~E~~v~~Le~~v~~l~~~l~~~~~~~~~s~~~~ 710 (875)
.+|.-.+.++..+++++..+..+..++-..-+|-+.+-
T Consensus 117 ~~Le~re~eLe~~~~~~~~~~~~~~~~l~~~a~lt~~e 154 (520)
T PRK12704 117 KELEQKQQELEKKEEELEELIEEQLQELERISGLTAEE 154 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 45666666777777777777777777777677765543
No 268
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=39.93 E-value=2.2e+02 Score=34.63 Aligned_cols=78 Identities=26% Similarity=0.391 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-------CCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 620 HERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSG-------QFSSSRGMDSKTRAELEEIALAEADVARLKQKVAEL 692 (875)
Q Consensus 620 ~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~-------~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l 692 (875)
...|..||+|+.+|+.++.+ ++.-++.+.....| .+...+.+-.+..=+...|+.||+++..|..+..-|
T Consensus 105 ~~~ra~~e~ei~kl~~e~~e---lr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl 181 (546)
T KOG0977|consen 105 ARERAKLEIEITKLREELKE---LRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRL 181 (546)
T ss_pred HHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45688899999999888864 33333333221111 122345555566666677777777777777766666
Q ss_pred HHHHHHHH
Q 002837 693 HHQLNQQR 700 (875)
Q Consensus 693 ~~~l~~~~ 700 (875)
+.+|..-|
T Consensus 182 ~~~l~~~r 189 (546)
T KOG0977|consen 182 REELARAR 189 (546)
T ss_pred HHHHHHHH
Confidence 66665555
No 269
>PRK04863 mukB cell division protein MukB; Provisional
Probab=39.90 E-value=4.4e+02 Score=36.13 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 670 AELEEIALAEADVARLKQKVAELHHQ 695 (875)
Q Consensus 670 ~ll~eia~~E~~v~~Le~~v~~l~~~ 695 (875)
++-+++..+|.++..|++++.++...
T Consensus 380 eleeEleelEeeLeeLqeqLaelqqe 405 (1486)
T PRK04863 380 ENEARAEAAEEEVDELKSQLADYQQA 405 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555554444444433
No 270
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=39.73 E-value=2.8e+02 Score=31.53 Aligned_cols=67 Identities=21% Similarity=0.333 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 618 ALHERRLALEQDVSRLQEQLQA-ERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELH 693 (875)
Q Consensus 618 ~~~~~r~~LeqeV~~Lq~qL~~-E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~ 693 (875)
...+.+.-|+++|.+++++|.+ |..|... ....|.+. +...+...+.-|+.|+.+++.+|.++..|+
T Consensus 167 ~~~~a~~fl~~ql~~~~~~l~~ae~~l~~f-----r~~~~~~d----~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~ 234 (362)
T TIGR01010 167 ARKDTIAFAENEVKEAEQRLNATKAELLKY-----QIKNKVFD----PKAQSSAQLSLISTLEGELIRVQAQLAQLR 234 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhCCCcC----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667789999999888865 3333322 22223222 112344555555555555555555544443
No 271
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=39.70 E-value=1.4e+02 Score=27.01 Aligned_cols=52 Identities=17% Similarity=0.349 Sum_probs=39.0
Q ss_pred hhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 588 EITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQA 639 (875)
Q Consensus 588 ~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~ 639 (875)
...+.++.++|+--+-+...++..+-.=-.+-..-+..-|.||.+|+.+|+.
T Consensus 24 k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~ 75 (79)
T PF08581_consen 24 KHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3477788888888888888888777655556666677778888888888753
No 272
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=39.65 E-value=1e+02 Score=31.20 Aligned_cols=58 Identities=24% Similarity=0.363 Sum_probs=45.2
Q ss_pred HHHhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Q 002837 582 LAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQ-----ALHERRLALEQDVSRLQEQLQA 639 (875)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~-----~~~~~r~~LeqeV~~Lq~qL~~ 639 (875)
..+..|+..-.+|+.++..--+.+..|++.|..-.. .+...-.+|++++..|+.+|+.
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEK 134 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777888888888888888888888765554 4577778899999999988874
No 273
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=39.39 E-value=4e+02 Score=32.83 Aligned_cols=91 Identities=26% Similarity=0.368 Sum_probs=57.8
Q ss_pred HHHHhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 002837 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSS 660 (875)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~ 660 (875)
+-.|.+|+.+=..|+ .+|..|++.++.-|......+..|++=-.+....++..+
T Consensus 421 ~~~i~~~~~~ve~l~-------~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~r------------------- 474 (652)
T COG2433 421 EKRIKKLEETVERLE-------EENSELKRELEELKREIEKLESELERFRREVRDKVRKDR------------------- 474 (652)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-------------------
Confidence 344555555554444 467788888887766555544444443333333333333
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002837 661 SRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQHH 703 (875)
Q Consensus 661 ~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~~~ 703 (875)
+.+++-.+|..||-++.+=+..|..|...|.+-+.-+
T Consensus 475 ------ei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~ 511 (652)
T COG2433 475 ------EIRARDRRIERLEKELEEKKKRVEELERKLAELRKMR 511 (652)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777888888888888888889998888887543
No 274
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=39.38 E-value=5.6e+02 Score=31.69 Aligned_cols=64 Identities=14% Similarity=0.246 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhcCCCcccchhhhcc-cccchhhhhcccccchh
Q 002837 667 KTRAELEEIALAEADVARLKQKVAE---LHHQLNQQRQHHYGSLSDACDRYQNV-QNHNSQQRFLQQDFDST 734 (875)
Q Consensus 667 ~~~~ll~eia~~E~~v~~Le~~v~~---l~~~l~~~~~~~~~s~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 734 (875)
.++..+.+|..+..++-.++..+.. ++.+|..+-. ++....+++... ..++.-.+.+||..||.
T Consensus 441 e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e----~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~ 508 (594)
T PF05667_consen 441 ESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELE----KLPKDVNRSAYTRRILEIVKNIRKQKEEIE 508 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCCCCCHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4455666666666666666555533 3334433322 222223333333 44555555555555555
No 275
>PRK03918 chromosome segregation protein; Provisional
Probab=39.35 E-value=5.1e+02 Score=33.00 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=10.0
Q ss_pred HHHHhhhhhhHHHHHHHHHHH
Q 002837 829 LVELTTRLDFFKERRSQLMEQ 849 (875)
Q Consensus 829 l~~lt~rl~f~kerrsq~~~~ 849 (875)
+.+|..++.-+++....+-++
T Consensus 461 i~~l~~~~~~l~~~~~~l~~~ 481 (880)
T PRK03918 461 LKRIEKELKEIEEKERKLRKE 481 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555544444333
No 276
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=39.31 E-value=2.1e+02 Score=27.48 Aligned_cols=16 Identities=38% Similarity=0.665 Sum_probs=4.6
Q ss_pred HhHhhhhhHHHHHHHH
Q 002837 584 IQRLEITKNDLRHRIA 599 (875)
Q Consensus 584 ~~~~~~~~~~~~~~~~ 599 (875)
-++||+.+++||++.+
T Consensus 4 ~~~l~as~~el~n~La 19 (107)
T PF09304_consen 4 KEALEASQNELQNRLA 19 (107)
T ss_dssp ----------HHHHHH
T ss_pred HHHHHhhHHHHHHHHH
Confidence 3578888888888874
No 277
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=38.93 E-value=5.3e+02 Score=27.85 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=21.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 665 DSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (875)
Q Consensus 665 p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~ 699 (875)
..=+++.|++++.||..+.-+++.+..++.++-+-
T Consensus 84 E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l 118 (225)
T COG1842 84 EDLAREALEEKQSLEDLAKALEAELQQAEEQVEKL 118 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777777777766666666555555544443
No 278
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=38.92 E-value=3.4e+02 Score=33.78 Aligned_cols=104 Identities=24% Similarity=0.221 Sum_probs=67.1
Q ss_pred hHHHHHhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 002837 579 EEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQ--ALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSG 656 (875)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~--~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~ 656 (875)
++--+-+||--..+-|+.-.-.| .| .-|--|..|=+ ...-.-.-|++|-.+|+++|.+|++--+-++.-+.
T Consensus 663 eE~~l~~rL~dSQtllr~~v~~e-qg--ekqElL~~~~~l~s~~~q~sllraE~~~l~~~le~e~nr~~~~~~e~~---- 735 (961)
T KOG4673|consen 663 EERSLNERLSDSQTLLRINVLEE-QG--EKQELLSLNFSLPSSPIQLSLLRAEQGQLSKSLEKERNRAAENRQEYL---- 735 (961)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHH-hh--hHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH----
Confidence 34456678876666665554444 11 11111111111 01111234889999999999999987766655333
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002837 657 QFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQH 702 (875)
Q Consensus 657 ~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~~ 702 (875)
.+=+||..|+..++.||+.+..++..+.|+.+.
T Consensus 736 -------------~~qeE~~~l~~r~~~le~e~r~~k~~~~q~lq~ 768 (961)
T KOG4673|consen 736 -------------AAQEEADTLEGRANQLEVEIRELKRKHKQELQE 768 (961)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 556789999999999999999999988888653
No 279
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=38.84 E-value=3.7e+02 Score=30.73 Aligned_cols=82 Identities=21% Similarity=0.246 Sum_probs=50.4
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHH
Q 002837 602 ARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEAD 681 (875)
Q Consensus 602 ~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~eia~~E~~ 681 (875)
--+|+-||..|+.-++. .-+-|.|...|-+.|.+++....+|..--. .++..++.+=.+-| +-
T Consensus 140 ~EEn~~lqlqL~~l~~e----~~Ekeeesq~LnrELaE~layqq~L~~eyQ---atf~eq~~ml~kRQ----------~y 202 (401)
T PF06785_consen 140 REENQCLQLQLDALQQE----CGEKEEESQTLNRELAEALAYQQELNDEYQ---ATFVEQHSMLDKRQ----------AY 202 (401)
T ss_pred HHHHHHHHHhHHHHHHH----HhHhHHHHHHHHHHHHHHHHHHHHHHHHhh---cccccchhhhHHHH----------HH
Confidence 34677788877633322 234567778888888888877777765333 44544443333333 45
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002837 682 VARLKQKVAELHHQLNQQR 700 (875)
Q Consensus 682 v~~Le~~v~~l~~~l~~~~ 700 (875)
|.+||.||.||-+.+..--
T Consensus 203 I~~LEsKVqDLm~EirnLL 221 (401)
T PF06785_consen 203 IGKLESKVQDLMYEIRNLL 221 (401)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6778888888777655443
No 280
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=38.78 E-value=4.4e+02 Score=33.96 Aligned_cols=136 Identities=23% Similarity=0.333 Sum_probs=74.0
Q ss_pred HhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH------HHHHHH-----HHHHHHHHHHhhc
Q 002837 584 IQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRL------QEQLQA-----ERDLRAALEVGLS 652 (875)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~L------q~qL~~-----E~~l~~~Le~al~ 652 (875)
|.-+|.+-.|||.+|.--. |-...=..|-.++=.|.+|-..||.+|..| ++||++ |.+||.-|+-|=+
T Consensus 426 ~d~aEs~iadlkEQVDAAl-GAE~MV~qLtdknlnlEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~~g 504 (1243)
T KOG0971|consen 426 LDQAESTIADLKEQVDAAL-GAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMAKG 504 (1243)
T ss_pred HHHHHHHHHHHHHHHHHhh-cHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555566666663211 112222334555666777777777777654 566654 7788887776532
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhcccccchhhh
Q 002837 653 MSSGQFSSSRGMDSKTRAELEEIALAEA-------DVARLKQKVAELHHQLNQQRQHHYGSLSDACDRYQNVQNHNSQQR 725 (875)
Q Consensus 653 ~~~~~~~~~~~lp~~~~~ll~eia~~E~-------~v~~Le~~v~~l~~~l~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 725 (875)
..++|..+|...-+ +|.+.-+-|..|+.||...+.+..+|. +++++-|.-.+-.-
T Consensus 505 --------------~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq~~Sse----ees~q~~s~~~et~ 566 (1243)
T KOG0971|consen 505 --------------ARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQQESSE----EESQQPPSVDPETF 566 (1243)
T ss_pred --------------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH----HHhcCCCCCchhhh
Confidence 12455555554444 455555566666777777777655543 34444444433333
Q ss_pred hcccccchhhhhh
Q 002837 726 FLQQDFDSTLAFV 738 (875)
Q Consensus 726 ~~~~~~~~~~~~~ 738 (875)
.-|+-|-.+-||.
T Consensus 567 dyk~~fa~skaya 579 (1243)
T KOG0971|consen 567 DYKIKFAESKAYA 579 (1243)
T ss_pred HHHHHHHHhHHHH
Confidence 4444454454444
No 281
>KOG4270 consensus GTPase-activator protein [Signal transduction mechanisms]
Probab=38.55 E-value=26 Score=42.58 Aligned_cols=154 Identities=13% Similarity=-0.018 Sum_probs=94.1
Q ss_pred CCCCCCcccccchHHHhhhcC-----CCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcC--CCCCCCCCC
Q 002837 158 KRPVKSLVVGRPILLALEDID-----GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG--KTEFSADED 230 (875)
Q Consensus 158 k~~~k~~VFGvpL~~ll~~~~-----~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G--~~~~~~~~D 230 (875)
..+.+..+|+ .|..+..... -.+.-..+|..+....+....|.|+.+|.. +..+++.-+.+ ++.+..+..
T Consensus 32 ~~pl~~~~e~-~l~~~~~~ek~~~~r~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~--~~~~~~e~e~~~~kie~~~d~~ 108 (577)
T KOG4270|consen 32 VFPLRKIIEV-ELPNIRKEEKNLQRRVSDMDSEQLRLFQAQKSSGEEGLFRLPGAK--IDTLKEEEEECGMKIEQPTDQR 108 (577)
T ss_pred cCcccchhhh-hhhHHHHHHHHHHhhhhhcchhhhhhhhhhhhhhhccccccCcch--hhhhhchHHhhcCccccCcchh
Confidence 4455566777 5555543321 135556788888888899999999999943 44444433333 356667788
Q ss_pred cchhhhhhhhhhccCCCCCCChhhHHHHHHHHhcCCHHH----HHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCC
Q 002837 231 AHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEA----RISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHE 306 (875)
Q Consensus 231 ~h~VAslLK~fLReLPePLLp~~ly~~~i~~~~~~~~ee----ri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~ 306 (875)
.+++.++++.+++.+ +|.++.-|...+.......... ...+++. ...|..|+ +-+++.||... -.
T Consensus 109 ~~~~~~f~~~~~~~~--f~~~~~e~q~~~~rrals~~~~vfgv~~~s~Q~---s~~~~~n~--vp~i~~l~~~~----~l 177 (577)
T KOG4270|consen 109 HADHVTFDRKEGEYL--FLGLPVEFQPDYHRRALSASETVFGVSTEAMQL---SYDPRGNF--VPLILHLLQSG----RL 177 (577)
T ss_pred hhhhhhhhhhcchhh--hccchhhhccccccccccchhhhhcchHHhhhc---ccccCCCc--chhhhHhhhhh----hh
Confidence 899999999999998 6776665554443322221111 2234442 45677777 66666666654 34
Q ss_pred CCCCccchhhhccccccCC
Q 002837 307 NRMTPSAVAACMAPLLLRP 325 (875)
Q Consensus 307 NKMta~NLAi~FaP~LLrp 325 (875)
+.|.-.+...+|.++...+
T Consensus 178 ~~e~Gl~eEGlFRi~~~~s 196 (577)
T KOG4270|consen 178 LLEGGLKEEGLFRINGEAS 196 (577)
T ss_pred hhhcCccccceeccCCCch
Confidence 4455555556666555443
No 282
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=38.41 E-value=6.2e+02 Score=30.69 Aligned_cols=37 Identities=14% Similarity=0.244 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcc
Q 002837 673 EEIALAEADVARLKQKVAELHHQLNQQRQHHYGSLSD 709 (875)
Q Consensus 673 ~eia~~E~~v~~Le~~v~~l~~~l~~~~~~~~~s~~~ 709 (875)
.+|...+.++..++++...+..+..++-..-+|-+.+
T Consensus 111 ~~L~~re~eLee~~~e~~~~~~~~~~~le~~a~lt~~ 147 (514)
T TIGR03319 111 KELSNKEKNLDEKEEELEELIAEQREELERISGLTQE 147 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 3455555666666666666666666666666665544
No 283
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=38.34 E-value=7.4e+02 Score=29.32 Aligned_cols=35 Identities=31% Similarity=0.368 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002837 668 TRAELEEIALAEADVARLKQKVAELHHQLNQQRQH 702 (875)
Q Consensus 668 ~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~~ 702 (875)
-++|...++.++.++.-|+.++..|..++.+.+.+
T Consensus 312 ~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~ 346 (498)
T TIGR03007 312 YQQLQIELAEAEAEIASLEARVAELTARIERLESL 346 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788889999999999999999999888777553
No 284
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=38.14 E-value=3e+02 Score=29.81 Aligned_cols=30 Identities=23% Similarity=0.316 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 002837 670 AELEEIALAEADVARLKQKVAELHHQ-LNQQ 699 (875)
Q Consensus 670 ~ll~eia~~E~~v~~Le~~v~~l~~~-l~~~ 699 (875)
.....|..+.+++..|+.+|+.++.. |+..
T Consensus 78 ~~~~~i~r~~eey~~Lk~~in~~R~e~lgl~ 108 (230)
T PF10146_consen 78 KRQEKIQRLYEEYKPLKDEINELRKEYLGLE 108 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 46667777777777777777777766 5443
No 285
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=37.92 E-value=1.5e+02 Score=30.36 Aligned_cols=66 Identities=21% Similarity=0.259 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 625 ALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQL 696 (875)
Q Consensus 625 ~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l 696 (875)
.|..|+.+|..|.+.|+.+|...|.-+..- --.+-..+++|..-|+.||+++-.|+.++..+..+.
T Consensus 54 ~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~------Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~ 119 (158)
T PF09744_consen 54 LLREDNEQLETQYEREKELRKQAEEELLEL------EDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQS 119 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 466688888888888888887766432100 012334567777777777777777777766655543
No 286
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=37.57 E-value=3.5e+02 Score=32.58 Aligned_cols=91 Identities=21% Similarity=0.239 Sum_probs=47.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC-CCCCCChhHHHHHHHHHHHHHHHHHHH
Q 002837 608 LQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFS-SSRGMDSKTRAELEEIALAEADVARLK 686 (875)
Q Consensus 608 ~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~-~~~~lp~~~~~ll~eia~~E~~v~~Le 686 (875)
+|-.++--+..++..+.+|.+==.+-++-||.-..+..-|..+... +.+. .+.. ...-+|=.|...+.+++..|+
T Consensus 219 ~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~--~~~~~~~~~--~el~~l~~E~~~~~ee~~~l~ 294 (511)
T PF09787_consen 219 LQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLE--EGFDSSTNS--IELEELKQERDHLQEEIQLLE 294 (511)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccc--cccccccch--hcchhhHHHHHHHHHHHHHHH
Confidence 3333333333334444444444444455555555555555552211 1111 0000 122356678888888888888
Q ss_pred HHHHHHHHHHHHHHhh
Q 002837 687 QKVAELHHQLNQQRQH 702 (875)
Q Consensus 687 ~~v~~l~~~l~~~~~~ 702 (875)
.++..|+-++.+....
T Consensus 295 ~Qi~~l~~e~~d~e~~ 310 (511)
T PF09787_consen 295 RQIEQLRAELQDLEAQ 310 (511)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888555443
No 287
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=37.51 E-value=4e+02 Score=26.03 Aligned_cols=47 Identities=32% Similarity=0.456 Sum_probs=25.7
Q ss_pred HHhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQL 637 (875)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL 637 (875)
.|.+|+..|..|...|.+=.+.|..+++. ..+-..|++++..|+.+.
T Consensus 38 el~~l~~~r~~l~~Eiv~l~~~~e~~~~~--------~~~~~~L~~el~~l~~ry 84 (120)
T PF12325_consen 38 ELARLEAERDELREEIVKLMEENEELRAL--------KKEVEELEQELEELQQRY 84 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 35556666666666665555555555333 223345666666666554
No 288
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=37.50 E-value=2.5e+02 Score=28.68 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=32.6
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002837 663 GMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (875)
Q Consensus 663 ~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~ 701 (875)
.=|.++..+-.+|..+|..+..++.++......+..|..
T Consensus 142 ~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~~~El~ 180 (218)
T cd07596 142 IKPAKVEELEEELEEAESALEEARKRYEEISERLKEELK 180 (218)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999999999999988888888777754
No 289
>PLN02320 seryl-tRNA synthetase
Probab=36.71 E-value=1.8e+02 Score=35.12 Aligned_cols=37 Identities=22% Similarity=0.274 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002837 666 SKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQH 702 (875)
Q Consensus 666 ~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~~ 702 (875)
..+.+|++|+..|-+++..||+++..+..+|.+.-..
T Consensus 130 ~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~ 166 (502)
T PLN02320 130 SERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQS 166 (502)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567888888888888888888888888877776543
No 290
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=36.37 E-value=2.1e+02 Score=34.22 Aligned_cols=30 Identities=17% Similarity=0.275 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 669 RAELEEIALAEADVARLKQKVAELHHQLNQ 698 (875)
Q Consensus 669 ~~ll~eia~~E~~v~~Le~~v~~l~~~l~~ 698 (875)
+++-.|+..|..++..|...+.+|..||..
T Consensus 112 ~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~ 141 (472)
T TIGR03752 112 QELTKEIEQLKSERQQLQGLIDQLQRRLAG 141 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 577778888999999999999999888853
No 291
>PF13514 AAA_27: AAA domain
Probab=36.01 E-value=6.7e+02 Score=33.23 Aligned_cols=132 Identities=21% Similarity=0.208 Sum_probs=78.8
Q ss_pred cccCCCChhHHHHHhHhhhhhHHHHHHHHHHhhhhhhhhhhH------------HHHHHHHHHHHHH---HHHHHHHHHH
Q 002837 571 VESIDSSGEEELAIQRLEITKNDLRHRIAKEARGNAILQASL------------ERRKQALHERRLA---LEQDVSRLQE 635 (875)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~------------~~rk~~~~~~r~~---LeqeV~~Lq~ 635 (875)
.+.++++.+....+++++.....++.+|..-...-+.|+..+ ..+=.+|.+.+.. .++|+.+++.
T Consensus 231 ~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~ll~~~~~I~~L~~~~~~~~~~~~dl~~~~~ 310 (1111)
T PF13514_consen 231 GEVPDFPEDGAERLEQLEEELAEAQAQLERLQEELAQLEEELDALPVDEELLAHAAEIEALEEQRGEYRKARQDLPRLEA 310 (1111)
T ss_pred CCcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777777777777777777666644333333333322 1222345554443 4556666666
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCC------CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002837 636 QLQAERDLRAALEVGLSMSSGQF------SSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQHH 703 (875)
Q Consensus 636 qL~~E~~l~~~Le~al~~~~~~~------~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~~~ 703 (875)
++..-..--..|..-|+ +.... .++......+++|+.+-..++..+..++.++.+....+.+-+.+.
T Consensus 311 e~~~~~~~~~~~~~~lg-~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~ 383 (1111)
T PF13514_consen 311 ELAELEAELRALLAQLG-PDWDEEDLEALDPSLAARERIRELLQEREQLEQALAQARRELEEAERELEQLQAEL 383 (1111)
T ss_pred HHHHHHHHHHHHHHhcC-CCcccchhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66554433334444466 22111 133344457788888889999999999999988888887766653
No 292
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=35.85 E-value=1.6e+02 Score=34.71 Aligned_cols=64 Identities=30% Similarity=0.321 Sum_probs=34.1
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhhhhHH-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhc
Q 002837 587 LEITKNDLRHRIAKEARGNAILQASLE-RRKQALHERRLALEQDV-SRLQEQLQAERDLRAALEVGLS 652 (875)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~n~~~q~~~~-~rk~~~~~~r~~LeqeV-~~Lq~qL~~E~~l~~~Le~al~ 652 (875)
.|..+++.|.-+ |-|-.||-+|..-- --|.+|+--++. |+|| +.|++||+.|+.+|.+++.-|.
T Consensus 501 ~eTll~niq~ll-kva~dnar~qekQiq~Ek~ELkmd~lr-erelreslekql~~ErklR~~~qkr~k 566 (641)
T KOG3915|consen 501 IETLLTNIQGLL-KVAIDNARAQEKQIQLEKTELKMDFLR-ERELRESLEKQLAMERKLRAIVQKRLK 566 (641)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666544 44667887774310 001222111111 2232 4577888888888887776553
No 293
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.75 E-value=2.7e+02 Score=30.16 Aligned_cols=34 Identities=21% Similarity=0.338 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002837 669 RAELEEIALAEADVARLKQKVAELHHQLNQQRQH 702 (875)
Q Consensus 669 ~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~~ 702 (875)
+.+=+|+.+++.-+-.|+.+..+++.=|.++|+-
T Consensus 96 k~~q~elEvl~~n~Q~lkeE~dd~keiIs~kr~~ 129 (246)
T KOG4657|consen 96 KATQSELEVLRRNLQLLKEEKDDSKEIISQKRQA 129 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3444577777777777888888888888888763
No 294
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=35.48 E-value=1e+02 Score=36.75 Aligned_cols=62 Identities=16% Similarity=0.232 Sum_probs=41.3
Q ss_pred ccCCCChhHHHHHhHhhhhh---HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 572 ESIDSSGEEELAIQRLEITK---NDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQL 637 (875)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL 637 (875)
.-||-..++-...-+|+... .+|+.+|+++=++...+. +.++.+.++=.+||.|+.+|+.|+
T Consensus 56 ~vV~~~FddkVnqSALteqQ~kasELEKqLaaLrqElq~~s----aq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 56 GVVDTTFDDKVRQHATTEMQVTAAQMQKQYEEIRRELDVLN----KQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred ceecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhhHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666665544 788888887632222222 556666666678999999999998
No 295
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=35.46 E-value=3.3e+02 Score=37.71 Aligned_cols=108 Identities=19% Similarity=0.234 Sum_probs=71.6
Q ss_pred HHHHhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLA-----------LEQDVSRLQEQLQAERDLRAALEV 649 (875)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~-----------LeqeV~~Lq~qL~~E~~l~~~Le~ 649 (875)
+..|.+|+...++|+..|.+...++-.|+...++=|+...+-+.. |.-++.+|++.|..=.++-.=|+.
T Consensus 1256 ~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~~ke~~~~el~~ 1335 (1822)
T KOG4674|consen 1256 NFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEELEEKENLIAELKK 1335 (1822)
T ss_pred HhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888899999999999999987766655444333 667999999999877777666666
Q ss_pred hhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 650 GLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (875)
Q Consensus 650 al~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~ 694 (875)
-|++-. ..+-.+..++-.+++.+...|-.|+..-..|-.
T Consensus 1336 ~~~~~q------~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~ 1374 (1822)
T KOG4674|consen 1336 ELNRLQ------EKIKKQLDELNNEKANLTKELEQLEDLKTRLAA 1374 (1822)
T ss_pred HHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665332 222233445555666665555555444433333
No 296
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.43 E-value=2.2e+02 Score=33.22 Aligned_cols=53 Identities=36% Similarity=0.490 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 626 LEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQ 695 (875)
Q Consensus 626 LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~ 695 (875)
|-.++.-||.||++|+-.+.-||--|. -.+++-...++-++.|+-++.-+|+|
T Consensus 439 l~~ei~~L~eqle~e~~~~~~le~ql~-----------------~~ve~c~~~~aS~~slk~e~erl~qq 491 (542)
T KOG0993|consen 439 LVKEIQSLQEQLEKERQSEQELEWQLD-----------------DDVEQCSNCDASFASLKVEPERLHQQ 491 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 666788899999999999999997664 45566666666666666666666644
No 297
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=35.16 E-value=1.1e+02 Score=29.41 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002837 675 IALAEADVARLKQKVAELHHQL 696 (875)
Q Consensus 675 ia~~E~~v~~Le~~v~~l~~~l 696 (875)
...+.++|-.||++|.+|..++
T Consensus 85 ~~~l~~rvd~Lerqv~~Lenk~ 106 (108)
T COG3937 85 MDELTERVDALERQVADLENKL 106 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3567777888888888777665
No 298
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=35.13 E-value=58 Score=33.56 Aligned_cols=27 Identities=33% Similarity=0.549 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 670 AELEEIALAEADVARLKQKVAELHHQL 696 (875)
Q Consensus 670 ~ll~eia~~E~~v~~Le~~v~~l~~~l 696 (875)
+.|.|-..|.++|-+|+.++.||++.|
T Consensus 21 ~ELdEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 21 SELDEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566899999999999999999999999
No 299
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=35.12 E-value=6.9e+02 Score=33.29 Aligned_cols=111 Identities=15% Similarity=0.159 Sum_probs=64.7
Q ss_pred HHHHhHhhhhhHHHHHHH---HHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhcCCC
Q 002837 581 ELAIQRLEITKNDLRHRI---AKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAE--RDLRAALEVGLSMSS 655 (875)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~---~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E--~~l~~~Le~al~~~~ 655 (875)
++....|++-..-|..++ ..|.-+|..+|.-+..|..-...+-..||++|..||.++..- ..-..+++.+-...
T Consensus 172 ~a~~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~~~~~~~- 250 (1109)
T PRK10929 172 QAQLTALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAERALESTELLA- 250 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-
Confidence 344445555444444444 345668888888887777777777888999999999888652 22233444443210
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 656 GQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQ 695 (875)
Q Consensus 656 ~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~ 695 (875)
.-...+|+..+++++.-..|=.++...-++++.|..+
T Consensus 251 ---~~~~~~~~~i~~~~~~N~~Ls~~L~~~t~~~n~l~~~ 287 (1109)
T PRK10929 251 ---EQSGDLPKSIVAQFKINRELSQALNQQAQRMDLIASQ 287 (1109)
T ss_pred ---HhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0112345556666655555555555555555554443
No 300
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=35.02 E-value=4.8e+02 Score=26.20 Aligned_cols=73 Identities=22% Similarity=0.318 Sum_probs=57.6
Q ss_pred hhHHHHHhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHh
Q 002837 578 GEEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQAL---HERRLALEQDVSRLQEQLQAERDL-RAALEVG 650 (875)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~---~~~r~~LeqeV~~Lq~qL~~E~~l-~~~Le~a 650 (875)
-++...++.|=..+..|...++-+.++-+-||+.+++-...+ .++-..||+.+..++.++.++..= |-+|.-+
T Consensus 16 ~~~~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~~~ 92 (160)
T PF13094_consen 16 REDSFDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVLQLD 92 (160)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhccc
Confidence 456677888888888999999999999999999876554433 566778999999999998877655 7777654
No 301
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=35.02 E-value=5.3e+02 Score=29.33 Aligned_cols=27 Identities=30% Similarity=0.501 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 671 ELEEIALAEADVARLKQKVAELHHQLN 697 (875)
Q Consensus 671 ll~eia~~E~~v~~Le~~v~~l~~~l~ 697 (875)
+..+++.+++++..++.++..++.+|.
T Consensus 244 ~~~~l~~~~~~l~~~~~~l~~~~~~l~ 270 (423)
T TIGR01843 244 VLEELTEAQARLAELRERLNKARDRLQ 270 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445555555555555555554443
No 302
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=34.99 E-value=1.2e+02 Score=27.04 Aligned_cols=28 Identities=36% Similarity=0.457 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 666 SKTRAELEEIALAEADVARLKQKVAELH 693 (875)
Q Consensus 666 ~~~~~ll~eia~~E~~v~~Le~~v~~l~ 693 (875)
.+++.++.-|++|..+|..|+++...|.
T Consensus 11 ~ki~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 11 EKIQQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4778899999999999999999855555
No 303
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=34.87 E-value=1.2e+02 Score=28.33 Aligned_cols=30 Identities=40% Similarity=0.577 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHhhc
Q 002837 623 RLALEQDVSRLQEQLQA------ERDLRAALEVGLS 652 (875)
Q Consensus 623 r~~LeqeV~~Lq~qL~~------E~~l~~~Le~al~ 652 (875)
.+.|++++++||+||.. |+==|.||+.+|.
T Consensus 4 ~s~I~~eIekLqe~lk~~e~keaERigr~AlKaGL~ 39 (92)
T PF07820_consen 4 SSKIREEIEKLQEQLKQAETKEAERIGRIALKAGLG 39 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 46788999999999864 6667788887774
No 304
>PF14282 FlxA: FlxA-like protein
Probab=34.52 E-value=2.3e+02 Score=26.84 Aligned_cols=63 Identities=27% Similarity=0.456 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002837 623 RLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQH 702 (875)
Q Consensus 623 r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~~ 702 (875)
-..|++.+..|+++|++-.+ ...+|.+++. .-+.+|...|.-|+.++..|+.+..++...
T Consensus 21 I~~L~~Qi~~Lq~ql~~l~~------------------~~~~~~e~k~--~q~q~Lq~QI~~LqaQI~qlq~q~~~~~~~ 80 (106)
T PF14282_consen 21 IEQLQKQIKQLQEQLQELSQ------------------DSDLDAEQKQ--QQIQLLQAQIQQLQAQIAQLQSQQAEQQQQ 80 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHc------------------ccCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34577777777777764321 1345666654 556777788888888888887777777654
Q ss_pred hcC
Q 002837 703 HYG 705 (875)
Q Consensus 703 ~~~ 705 (875)
...
T Consensus 81 ~~~ 83 (106)
T PF14282_consen 81 KQS 83 (106)
T ss_pred ccc
Confidence 433
No 305
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.99 E-value=4.7e+02 Score=31.86 Aligned_cols=121 Identities=18% Similarity=0.254 Sum_probs=72.4
Q ss_pred HHHHhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 002837 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQ---ALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQ 657 (875)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~---~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~ 657 (875)
|--|+|-.-.|.++|+-|. .||-..+.+-+ ..+|.|.-++.--.+|.++.++=+.-|..|++-+++-
T Consensus 573 EqYi~~~dlV~~e~qrH~~-------~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L--- 642 (741)
T KOG4460|consen 573 EQYILKQDLVKEEIQRHVK-------LLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKL--- 642 (741)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---
Confidence 4445555556666665553 12222222222 3355566677777788888888888888888766421
Q ss_pred CCCC-CCCChhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccc
Q 002837 658 FSSS-RGMDSKTRAEL---EEIALAEADVARLKQKVAELHHQLNQQRQHHYGSLSDAC 711 (875)
Q Consensus 658 ~~~~-~~lp~~~~~ll---~eia~~E~~v~~Le~~v~~l~~~l~~~~~~~~~s~~~~~ 711 (875)
+..+ +++|+-+.+.+ .|+-.+-.++--|---+..++.....||.+-..+..++-
T Consensus 643 ~~~~~~~lp~l~~AErdFk~Elq~~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~ 700 (741)
T KOG4460|consen 643 LHSFHSELPVLSDAERDFKKELQLIPDQLRHLGNAIETVTMKKDKQQQHMEKVLSALP 700 (741)
T ss_pred HhcccccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 1122 55666665554 466666666666777777777777777777666665544
No 306
>PRK11281 hypothetical protein; Provisional
Probab=33.94 E-value=4.4e+02 Score=35.04 Aligned_cols=41 Identities=32% Similarity=0.446 Sum_probs=36.0
Q ss_pred HHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 599 AKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQA 639 (875)
Q Consensus 599 ~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~ 639 (875)
..|..+|..+|.-+..|..-+..+-..+|+.|..||.++.+
T Consensus 212 ~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~ 252 (1113)
T PRK11281 212 RKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINS 252 (1113)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999888888888888899999999998876
No 307
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=33.87 E-value=8.3e+02 Score=30.67 Aligned_cols=122 Identities=22% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHhHhhhhhHHHHHHHHHHh-------------hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 002837 582 LAIQRLEITKNDLRHRIAKEA-------------RGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAA-- 646 (875)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~-------------~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~-- 646 (875)
..||.||-.+..+-.++.+=+ -++.-||+. -+|-..+..+-+-||-++..|+.+|+....++.-
T Consensus 248 dqlqel~~l~~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqsk-l~~~~~l~~~~~~LELeN~~l~tkL~rwE~~~~~~~ 326 (716)
T KOG4593|consen 248 DQLQELEELERALSQLREELATLRENRETVGLLQEELEGLQSK-LGRLEKLQSTLLGLELENEDLLTKLQRWERADQEMG 326 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhh
Q ss_pred -----------------HHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 002837 647 -----------------LEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQHHY 704 (875)
Q Consensus 647 -----------------Le~al~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~~~~ 704 (875)
=...|+....++..|..+|..+..+|.|.-.==+.+.-.+.++..|+-.|..--..+.
T Consensus 327 ~~~~~~~~~~~~~~e~s~~~~l~~~~~t~~s~~~~~~r~~q~lke~~k~~~~ite~~tklk~l~etl~~~~~~~~ 401 (716)
T KOG4593|consen 327 SLRTPEDLMEKLVNEQSRNANLKNKNSTVTSPARGLERARQLLKEELKQVAGITEEETKLKELHETLARRLQKRA 401 (716)
T ss_pred ccCCHHHHHHHHHHHHHHHhhhccccccccCcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
No 308
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=33.74 E-value=2.6e+02 Score=32.84 Aligned_cols=35 Identities=11% Similarity=0.175 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002837 668 TRAELEEIALAEADVARLKQKVAELHHQLNQQRQH 702 (875)
Q Consensus 668 ~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~~ 702 (875)
+.+|++++..|-+++..||+++..+..++.+....
T Consensus 71 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 105 (418)
T TIGR00414 71 IEEIKKELKELKEELTELSAALKALEAELQDKLLS 105 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67888899999999999999999988888876543
No 309
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=33.66 E-value=7.6e+02 Score=28.11 Aligned_cols=114 Identities=27% Similarity=0.278 Sum_probs=76.2
Q ss_pred cccCCCChhHHHHHhHhhhhh--HHHHHHHHHHhhhhhh--hhhhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 571 VESIDSSGEEELAIQRLEITK--NDLRHRIAKEARGNAI--LQASL-------ERRKQALHERRLALEQDVSRLQEQLQA 639 (875)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~n~~--~q~~~-------~~rk~~~~~~r~~LeqeV~~Lq~qL~~ 639 (875)
-|.-|.|.---++|+-=|+++ .++|..++.+||.|=+ ||..- ..-++.|..||++ -+-+.++-++
T Consensus 97 keLg~dSs~g~tl~~~Gesm~~i~evk~sl~~~vkq~FldpL~~l~~~elK~i~hh~KKLEgRRld----yD~kkkk~~K 172 (366)
T KOG1118|consen 97 KELGDDSSFGHTLIDAGESMREIGEVKDSLDDNVKQNFLDPLQNLQLKELKDIQHHRKKLEGRRLD----YDYKKKKQGK 172 (366)
T ss_pred HhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHhhhhhhH----HHHHHHHhcc
Confidence 355566777778888888877 5889999999999965 77762 2233345555554 4445555566
Q ss_pred --HHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002837 640 --ERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (875)
Q Consensus 640 --E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~ 701 (875)
|.+||.|||.-=+ ++-.+.-.=++++|.||...+|=+.-+..||.=.|+
T Consensus 173 ~~dEelrqA~eKfEE-------------SkE~aE~sM~nlle~d~eqvsqL~~Li~aqLdfhrq 223 (366)
T KOG1118|consen 173 IKDEELRQALEKFEE-------------SKELAEDSMFNLLENDVEQVSQLSALIQAQLDFHRQ 223 (366)
T ss_pred CChHHHHHHHHHHHH-------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999997322 111222223678888888888877777777765554
No 310
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=33.64 E-value=6.7e+02 Score=33.46 Aligned_cols=63 Identities=27% Similarity=0.267 Sum_probs=29.8
Q ss_pred HHhHhhhhhHHHHHHHHHHhhhhhhhh-------hhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 002837 583 AIQRLEITKNDLRHRIAKEARGNAILQ-------ASLERRKQALHER---RLALEQDVSRLQEQLQAERDLRA 645 (875)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~n~~~q-------~~~~~rk~~~~~~---r~~LeqeV~~Lq~qL~~E~~l~~ 645 (875)
.|++||.....++.++..-.+....+| ..++.++..+-.+ ..+|++.+..+.++..+......
T Consensus 296 ~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~ 368 (1163)
T COG1196 296 EIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLS 368 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666666654444333333 3333333333333 34444444444444444444444
No 311
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=33.58 E-value=1.8e+02 Score=31.40 Aligned_cols=67 Identities=18% Similarity=0.217 Sum_probs=34.6
Q ss_pred HhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 002837 584 IQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMS 654 (875)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~ 654 (875)
|.++...+.+|..+|..--+.-+.|+. ..+.+..+-..+++++++|++|+..-...+.-|.--|...
T Consensus 44 id~~~~e~~~L~~e~~~l~~e~e~L~~----~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m 110 (251)
T PF11932_consen 44 IDQWDDEKQELLAEYRQLEREIENLEV----YNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQM 110 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444333333333333 2334444455677777777777777776666665554433
No 312
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=33.57 E-value=3.7e+02 Score=31.84 Aligned_cols=87 Identities=16% Similarity=0.265 Sum_probs=48.1
Q ss_pred hhhhhhhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHH
Q 002837 604 GNAILQASLER----RKQALHERRLALEQDVSRLQEQLQA-ERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALA 678 (875)
Q Consensus 604 ~n~~~q~~~~~----rk~~~~~~r~~LeqeV~~Lq~qL~~-E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~eia~~ 678 (875)
.|+++++.++. |+.....-+.-|++++.+++++|.+ |..+...... .|.+ +|.....+..+|+.+
T Consensus 140 ~n~l~~~yi~~~~~~~~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~-----~~~~-----~~~~~~~~~~~l~~l 209 (498)
T TIGR03007 140 VQTLLTIFVEETLGSKRQDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQE-----NGGI-----LPDQEGDYYSEISEA 209 (498)
T ss_pred HHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----Cccc-----CccchhhHHHHHHHH
Confidence 46776666654 4455556677799999999999874 4444443321 1211 233333445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002837 679 EADVARLKQKVAELHHQLNQQR 700 (875)
Q Consensus 679 E~~v~~Le~~v~~l~~~l~~~~ 700 (875)
+..+..++.++..+..++..-+
T Consensus 210 ~~~l~~~~~~l~~~~a~~~~l~ 231 (498)
T TIGR03007 210 QEELEAARLELNEAIAQRDALK 231 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555544444433
No 313
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=33.48 E-value=5.9e+02 Score=26.77 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 670 AELEEIALAEADVARLKQKVAELHHQL 696 (875)
Q Consensus 670 ~ll~eia~~E~~v~~Le~~v~~l~~~l 696 (875)
+.-.||+-++.++..+++.+.+.+.+-
T Consensus 156 ~~~~ei~~lks~~~~l~~~~~~~e~~F 182 (190)
T PF05266_consen 156 AKDKEISRLKSEAEALKEEIENAELEF 182 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444889999999999999888877654
No 314
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=33.38 E-value=5.8e+02 Score=26.66 Aligned_cols=67 Identities=27% Similarity=0.286 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 615 RKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (875)
Q Consensus 615 rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~ 694 (875)
.+..+..+-..|+.+...|+.++.+=+.-..+++.... ...-.+....+++|.+|++.-..|..
T Consensus 121 ~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~----------------e~~~~~~k~~~~ei~~lk~~~~ql~~ 184 (189)
T PF10211_consen 121 GKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREE----------------ELRQEEEKKHQEEIDFLKKQNQQLKA 184 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777888888888888777777776666443 23445567778888888888777777
Q ss_pred HHH
Q 002837 695 QLN 697 (875)
Q Consensus 695 ~l~ 697 (875)
+|-
T Consensus 185 ~l~ 187 (189)
T PF10211_consen 185 QLE 187 (189)
T ss_pred HHh
Confidence 663
No 315
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=33.29 E-value=7.6e+02 Score=27.98 Aligned_cols=10 Identities=50% Similarity=0.245 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 002837 670 AELEEIALAE 679 (875)
Q Consensus 670 ~ll~eia~~E 679 (875)
+++.+|+-+|
T Consensus 250 e~~~~I~~ae 259 (312)
T smart00787 250 ELNTEIAEAE 259 (312)
T ss_pred HHHHHHHHHH
Confidence 3333443333
No 316
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=33.26 E-value=7e+02 Score=27.56 Aligned_cols=86 Identities=14% Similarity=0.232 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 611 SLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVA 690 (875)
Q Consensus 611 ~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~ 690 (875)
....+.+.+...+.+|+.++..+++++..-...-..=..+- .-+-...--+..++.-+.+..+++++..|..+..
T Consensus 132 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~-----~~tg~~G~Gp~~~~~~~~~~~~~~~l~~l~~~~~ 206 (301)
T PF14362_consen 132 SFDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGT-----GGTGVPGKGPRYKEKRAQLDAAQAELDTLQAQID 206 (301)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 33444555555556666666666655554443322222211 1111233446778888888888888888888888
Q ss_pred HHHHHHHHHHh
Q 002837 691 ELHHQLNQQRQ 701 (875)
Q Consensus 691 ~l~~~l~~~~~ 701 (875)
....+|.+.+.
T Consensus 207 ~~~~~l~~~~~ 217 (301)
T PF14362_consen 207 AAIAALDAQIA 217 (301)
T ss_pred HHHHHHHhhHH
Confidence 88888875544
No 317
>PF08687 ASD2: Apx/Shroom domain ASD2; InterPro: IPR014799 Cell shape changes require the coordination of actin and microtubule cytoskeletons. The Shroom family is a small group of related proteins that are defined by sequence similarity and in most cases by some link to the actin cytoskeleton. The Shroom (Shrm) protein family is found only in animals. Proteins of this family are predicted to be utilised in multiple morphogenic and developmental processes across animal phyla to regulate cells shape or intracellular architecture in an actin and myosin-dependent manner []. While the founding member of the Shrm family is Shrm1 (formerly Apx), it appears that this protein is found only in Xenopus []. In mice and humans, the Shrm family of proteins consists of: Shrm2 (formerly Apxl), a protein involved in the morphogenesis, maintenance, and/or function of vascular endothelial cells. Shrm3 (formerly Shroom), a protein necessary for neural tube closure in vertebrate development as deficiency in Shrm results in spina bifida. Shrm3 is also conserved in some invertebrates, as orthologues can be found in sea urchins. Shrm4, a regulator of cyto-skeletal architecture that may play an important role in vertebrate development. It is implicated in X-linked mental retardation in humans. This protein family is based on the conservation of a specific arrangement of an N-terminal PDZ domain, a centrally positioned sequence motif termed ASD1 (Apx/Shrm Domain 1) and a C-terminal motif termed ASD2 [, , ]. Shrm2 and Shrm3 contain all three domains, while Shrm4 contains the PDZ and ASD2 domains, but lacks a discernible ASD1 element. To date, the ASD1 and ASD2 elements have only been found in Shrm-related proteins and do not appear in combination with other conserved domains. ASD1 is required for targeting actin, while ASD2 is capable of eliciting an actomyosin based constriction event [, ]. ASD2 is the most highly conserved sequence element shared by Shrm1, Shrm2, Shrm3, and Shrm4. It possesses a well conserved series of leucine residues that exhibit spacing consistent with that of a leucine zipper motif []. Shroom2 is both necessary and sufficient to govern the localization of pigment granules at the apical surface of epithelial cells. Shroom2 is a central regulator of RPE pigmentation. Despite their diverse biological roles, Shroom family proteins share a common activity. Since the locus encoding human SHROOM2 lies within the critical region for two distinct forms of ocular albinism, it is possible that SHROOM2 mutations may contribute to human visual system disorders [].; GO: 0000902 cell morphogenesis, 0005737 cytoplasm; PDB: 3THF_B.
Probab=33.10 E-value=4.6e+02 Score=29.07 Aligned_cols=109 Identities=23% Similarity=0.183 Sum_probs=67.3
Q ss_pred HHhHhhhhhHH---HHHHHHHHhhhhhhhhhhHHHHHHHH----------------------------------------
Q 002837 583 AIQRLEITKND---LRHRIAKEARGNAILQASLERRKQAL---------------------------------------- 619 (875)
Q Consensus 583 ~~~~~~~~~~~---~~~~~~~~~~~n~~~q~~~~~rk~~~---------------------------------------- 619 (875)
+|.+|...-.+ .|..|..|++.|+.|.+.++..=++.
T Consensus 94 Li~~l~~kl~~L~~eqe~l~ee~~~n~~lG~~ve~~v~~~c~p~E~~Ky~~fi~Dl~kv~~LLLsLs~RLaRve~aL~~~ 173 (264)
T PF08687_consen 94 LIESLSKKLEVLQEEQEALQEEIQANEALGAEVEALVQEVCKPNEFEKYRMFIGDLEKVVNLLLSLSGRLARVENALSSL 173 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34444443333 35677899999999888775433311
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHhhcCCCCCCC-CCCCCChhHHHHHHHHHHHHHHH
Q 002837 620 -----HERRLALEQDVSRLQEQLQAE-----------RDLRAALEVGLSMSSGQFS-SSRGMDSKTRAELEEIALAEADV 682 (875)
Q Consensus 620 -----~~~r~~LeqeV~~Lq~qL~~E-----------~~l~~~Le~al~~~~~~~~-~~~~lp~~~~~ll~eia~~E~~v 682 (875)
++-|..|++--..|+.|+.+= +.++.+|.+.|+.. ++. .-.|+-.| -+||.|---||+-|
T Consensus 174 ~~~~~~~Er~~L~~k~~~L~~Q~edAk~LKe~~drRe~~v~~iL~~~L~~e--q~~dy~~fv~mK-a~Ll~eqreLddki 250 (264)
T PF08687_consen 174 DEDADPEERESLLEKRRLLQRQLEDAKELKENLDRRERVVSEILARYLSEE--QLADYRHFVKMK-AALLIEQRELDDKI 250 (264)
T ss_dssp H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-HH--HHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHH--HHHHHHHHHHHH-HHHHHHHHhHHHHH
Confidence 345778888888999988764 44555555555310 010 01222222 26888888888888
Q ss_pred HHHHHHHHHHHH
Q 002837 683 ARLKQKVAELHH 694 (875)
Q Consensus 683 ~~Le~~v~~l~~ 694 (875)
--.|+|+..|+-
T Consensus 251 klgeEQL~~L~e 262 (264)
T PF08687_consen 251 KLGEEQLEALRE 262 (264)
T ss_dssp HHHHHHHHHHCC
T ss_pred HhhHHHHHHHHh
Confidence 888888887753
No 318
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=32.99 E-value=9.8e+02 Score=31.42 Aligned_cols=125 Identities=22% Similarity=0.187 Sum_probs=73.7
Q ss_pred ChhHHHHHhHhhhhhHHHHHHHHHHhhhhhhhhhhH-------HHHHHHH--HHHHHHHHHHHHHH--HH--HHHHHHHH
Q 002837 577 SGEEELAIQRLEITKNDLRHRIAKEARGNAILQASL-------ERRKQAL--HERRLALEQDVSRL--QE--QLQAERDL 643 (875)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~-------~~rk~~~--~~~r~~LeqeV~~L--q~--qL~~E~~l 643 (875)
|-.-|+.|+|+-..--+-+++|..+.+.+.--+..+ .-.+... |.+++--..++.=| =+ |+.-|..+
T Consensus 59 cp~kelfi~riq~ldlete~a~~~~iaevtd~~~~vleld~~er~~~~q~~~hir~llk~r~~~~k~~id~~qe~se~i~ 138 (1195)
T KOG4643|consen 59 CPTKELFIQRIQILDLETEMAQMRTIAEVTDEECQVLELDNEERAQKIQILEHIRLLLKDRKKKWKSVIDDLQEASEKIA 138 (1195)
T ss_pred CCcHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445688899998888888888876666655433332 1223333 66665544444322 22 33444444
Q ss_pred HHHHH-HhhcCCCC-------CCCCC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002837 644 RAALE-VGLSMSSG-------QFSSS-RGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (875)
Q Consensus 644 ~~~Le-~al~~~~~-------~~~~~-~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~ 701 (875)
-.-|+ +|++...- ....| ...-.+-.+|=.|||.+|+-|..|++++.+=--+|.+-|+
T Consensus 139 e~~le~vGl~~~~~~s~s~~~~~~sp~~~~~~~~~hL~velAdle~kir~LrqElEEK~enll~lr~ 205 (1195)
T KOG4643|consen 139 EKLLELVGLEKKYRESRSGKELYKSPYDIVVKKNLHLEVELADLEKKIRTLRQELEEKFENLLRLRN 205 (1195)
T ss_pred HHHHHHhcccceeeccccCCCCCCCcchhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444 56654321 22233 3344567788899999999999999888765444444443
No 319
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=32.85 E-value=2.7e+02 Score=28.37 Aligned_cols=66 Identities=23% Similarity=0.328 Sum_probs=48.9
Q ss_pred hhHHHHHhHhhhhhHHHHHHHHHHhhhhhhhhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 578 GEEELAIQRLEITKNDLRHRIAKEARGNAILQASL---ERRKQALHERRLALEQDVSRLQEQLQAERDL 643 (875)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~---~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l 643 (875)
.++|+...-||.-..++..++.-=|+-=-.++|-+ ....++|.+++.++|.-+.+|+.-|......
T Consensus 22 ~d~e~~~dtLe~i~~~~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~m~~ 90 (162)
T PF05565_consen 22 LDEEAIADTLESIEDEIEEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDAMEA 90 (162)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777778899988888888744444333344443 5666788999999999999999998876554
No 320
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=32.68 E-value=3.9e+02 Score=30.98 Aligned_cols=99 Identities=21% Similarity=0.249 Sum_probs=69.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC------------C-C-CCCChhHHHHHHHHH
Q 002837 611 SLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFS------------S-S-RGMDSKTRAELEEIA 676 (875)
Q Consensus 611 ~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~------------~-~-~~lp~~~~~ll~eia 676 (875)
.|..|-...+-.|..|+....++......=...+..||.||..-.+++. + + -.-+.--.+|+.|+.
T Consensus 47 ~L~~Ri~di~~wk~eL~~~l~~~~~Ei~~L~~~K~~le~aL~~~~~pl~i~~ecL~~R~~R~~~dlv~D~ve~eL~kE~~ 126 (384)
T PF03148_consen 47 RLRQRIRDIRFWKNELERELEELDEEIDLLEEEKRRLEKALEALRKPLSIAQECLSLREKRPGIDLVHDEVEKELLKEVE 126 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCCCCcccCCCcHHHHHHHHHH
Confidence 3455556666667777777777776666666677788888755444442 1 1 345666789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcc
Q 002837 677 LAEADVARLKQKVAELHHQLNQQRQHHYGSLSD 709 (875)
Q Consensus 677 ~~E~~v~~Le~~v~~l~~~l~~~~~~~~~s~~~ 709 (875)
+++.--..|++.+.....||..-|.-++.-.-|
T Consensus 127 li~~~~~lL~~~l~~~~eQl~~lr~ar~~Le~D 159 (384)
T PF03148_consen 127 LIENIKRLLQRTLEQAEEQLRLLRAARYRLEKD 159 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988776655443333
No 321
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=32.60 E-value=6.7e+02 Score=27.10 Aligned_cols=37 Identities=14% Similarity=0.253 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 613 ERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEV 649 (875)
Q Consensus 613 ~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~ 649 (875)
..|.....+.+..|++++..|+++++.=..-..-|++
T Consensus 41 Q~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~ 77 (251)
T PF11932_consen 41 QKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLER 77 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666677777777666666554444443333
No 322
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=32.56 E-value=3.1e+02 Score=34.46 Aligned_cols=115 Identities=20% Similarity=0.231 Sum_probs=52.6
Q ss_pred HHHHhHhhhhhHHHHHHHHHHhh----hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 002837 581 ELAIQRLEITKNDLRHRIAKEAR----GNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSG 656 (875)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~----~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~ 656 (875)
+..|+.|.....+|+.+++.... .+-.+|+. +.++.+-+.++++++.++...++.|...-.+-+.+|.....
T Consensus 287 ~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l----~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~ 362 (754)
T TIGR01005 287 EDLIQRLRERQAELRATIADLSTTMLANHPRVVAA----KSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVN 362 (754)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888777764322 12222222 33334444455555555555555444433333333321111
Q ss_pred CCC-CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002837 657 QFS-SSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQHH 703 (875)
Q Consensus 657 ~~~-~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~~~ 703 (875)
.+. --..+| ..-.|+..|+-++.-.++-...|-.++.+-+...
T Consensus 363 ~~~~~~~~~~----~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~~ 406 (754)
T TIGR01005 363 QLKAASAQAG----EQQVDLDALQRDAAAKRQLYESYLTNYRQAASRQ 406 (754)
T ss_pred HHHHHHHhCc----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 000 000111 1233444555555555555555555555555444
No 323
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=32.46 E-value=4.3e+02 Score=25.02 Aligned_cols=72 Identities=26% Similarity=0.303 Sum_probs=45.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCh--hHHHHHHHHHHHHHHHHH
Q 002837 607 ILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDS--KTRAELEEIALAEADVAR 684 (875)
Q Consensus 607 ~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~lp~--~~~~ll~eia~~E~~v~~ 684 (875)
+++..+.+ +.+.++.-.+|++.+.+...+|+. ||.-+.+ ||. ...+|=.+|+-++.++..
T Consensus 22 ~~~~~l~~-~~a~~~~~~~l~~~~~~~~~Rl~~-------lE~~l~~----------LPt~~dv~~L~l~l~el~G~~~~ 83 (106)
T PF10805_consen 22 IFWLWLRR-TYAKREDIEKLEERLDEHDRRLQA-------LETKLEH----------LPTRDDVHDLQLELAELRGELKE 83 (106)
T ss_pred HHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHH-------HHHHHHh----------CCCHHHHHHHHHHHHHHHhHHHH
Confidence 45555544 446677777788888777777653 5555532 343 344666667777777777
Q ss_pred HHHHHHHHHHHH
Q 002837 685 LKQKVAELHHQL 696 (875)
Q Consensus 685 Le~~v~~l~~~l 696 (875)
|+.++..+..++
T Consensus 84 l~~~l~~v~~~~ 95 (106)
T PF10805_consen 84 LSARLQGVSHQL 95 (106)
T ss_pred HHHHHHHHHHHH
Confidence 777776665554
No 324
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=32.33 E-value=7.1e+02 Score=33.68 Aligned_cols=31 Identities=10% Similarity=0.200 Sum_probs=14.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 664 MDSKTRAELEEIALAEADVARLKQKVAELHH 694 (875)
Q Consensus 664 lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~ 694 (875)
.|.+..++-.++..++.++..|+.++..+..
T Consensus 968 ~~~qL~~~e~el~~~~~~ie~le~e~~~l~~ 998 (1311)
T TIGR00606 968 KDDYLKQKETELNTVNAQLEECEKHQEKINE 998 (1311)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4454555545444444444444444444333
No 325
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=32.30 E-value=1.6e+02 Score=25.37 Aligned_cols=64 Identities=20% Similarity=0.268 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 626 LEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAEL 692 (875)
Q Consensus 626 LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l 692 (875)
++.|+.||+++|.+=..--..++.-|+++.-.-.-|..+= ...-+-++-++.++..|++.+..|
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVv---e~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVV---EKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHH---HHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHH---HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5677777777777655555555555543311111232222 233444556677777787777765
No 326
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=32.28 E-value=8.5e+02 Score=28.72 Aligned_cols=113 Identities=22% Similarity=0.246 Sum_probs=69.8
Q ss_pred HHHhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC--
Q 002837 582 LAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFS-- 659 (875)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~-- 659 (875)
+.-.=|+.+.++|+.+-. ..| ..+.+|=....+-|..|+-.+.+--+..-+-..==++||.||.-..|+|.
T Consensus 253 ~l~~~l~~tan~lr~Q~~---~ve----~af~~ri~etqdar~kL~~ql~k~leEi~~~e~~I~~le~airdK~~pLKVA 325 (421)
T KOG2685|consen 253 ALDQTLRETANDLRTQAD---AVE----LAFKKRIRETQDARNKLEWQLAKTLEEIADAENNIEALERAIRDKEGPLKVA 325 (421)
T ss_pred HHHHHHHHHHHHHHHHHH---HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccccHHHH
Confidence 333445666666665542 222 23456666777777777766665443333333333467888766666553
Q ss_pred ---------CC---CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002837 660 ---------SS---RGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (875)
Q Consensus 660 ---------~~---~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~ 701 (875)
=| -+-+.--..|+.||-.|...|..|++++.+-...|.--.+
T Consensus 326 qTRle~Rt~RPnvELCrD~AQ~~L~~EV~~l~~t~~~L~~kL~eA~~~l~~L~~ 379 (421)
T KOG2685|consen 326 QTRLENRTYRPNVELCRDQAQYRLVDEVHELDDTVAALKEKLDEAEDSLKLLVN 379 (421)
T ss_pred HHHHHHcccCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 2334455689999999999999999999887766554433
No 327
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=32.21 E-value=1e+02 Score=28.26 Aligned_cols=55 Identities=24% Similarity=0.338 Sum_probs=40.5
Q ss_pred HHhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
Q 002837 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQAL--------------HERRLALEQDVSRLQEQL 637 (875)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~--------------~~~r~~LeqeV~~Lq~qL 637 (875)
....||..-..||.++.+|..-+++|...+.+....+ =.--..||-||.+|++++
T Consensus 9 ~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v 77 (88)
T PF14389_consen 9 RRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKV 77 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888889999999999999999999987765433 222344666666666655
No 328
>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]
Probab=31.52 E-value=65 Score=38.25 Aligned_cols=59 Identities=29% Similarity=0.357 Sum_probs=41.4
Q ss_pred HHHHhhhhh--hhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 002837 598 IAKEARGNA--ILQA-SLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSG 656 (875)
Q Consensus 598 ~~~~~~~n~--~~q~-~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~ 656 (875)
|-+|+++|- +||. ++---=-++...-.+|+||-++++++|.+|+..|+-||.-|-...+
T Consensus 597 ~~ee~r~~~~~vleekslvdtvyalkd~v~~lqqd~~kmkk~leeEqkaRrdLe~ll~k~l~ 658 (661)
T KOG2070|consen 597 LMEETRSNGQSVLEEKSLVDTVYALKDEVSELQQDNKKMKKVLEEEQKARRDLEKLLRKMLK 658 (661)
T ss_pred HHHhcccccceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456667653 2332 1111223667777889999999999999999999999987754433
No 329
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=31.32 E-value=7.4e+02 Score=29.47 Aligned_cols=100 Identities=19% Similarity=0.134 Sum_probs=55.4
Q ss_pred HHHHhHhhhhhHHHHHHHHHHhhhhhh-----hhhhHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH
Q 002837 581 ELAIQRLEITKNDLRHRIAKEARGNAI-----LQASLERRKQALHERRLA------------LEQDVSRLQEQLQAERDL 643 (875)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~n~~-----~q~~~~~rk~~~~~~r~~------------LeqeV~~Lq~qL~~E~~l 643 (875)
++.+..=|..=|+|-+|+++++=.-|. .+..+..-+.+|.++|.. +-+-|.+||.||-+.+.=
T Consensus 222 ~aLL~~sE~~VN~Ls~rar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~ae 301 (434)
T PRK15178 222 QRILSFAEQHVNTVSARMQKERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAE 301 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566667777776554433322 112222233344444422 446788999999887777
Q ss_pred HHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 644 RAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLN 697 (875)
Q Consensus 644 ~~~Le~al~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~ 697 (875)
..+|...+.... + .|..|+..|.-||++|..++.+|.
T Consensus 302 L~~L~~~~~p~s----------P-------qV~~l~~rI~aLe~QIa~er~kl~ 338 (434)
T PRK15178 302 YAQLMVNGLDQN----------P-------LIPRLSAKIKVLEKQIGEQRNRLS 338 (434)
T ss_pred HHHHHhhcCCCC----------C-------chhHHHHHHHHHHHHHHHHHHHhh
Confidence 666765543211 1 345566666666666666666654
No 330
>PRK14127 cell division protein GpsB; Provisional
Probab=31.20 E-value=77 Score=30.48 Aligned_cols=29 Identities=38% Similarity=0.394 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 670 AELEEIALAEADVARLKQKVAELHHQLNQ 698 (875)
Q Consensus 670 ~ll~eia~~E~~v~~Le~~v~~l~~~l~~ 698 (875)
++..|++.|++++.+|++++.+++.++..
T Consensus 41 ~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~ 69 (109)
T PRK14127 41 AFQKEIEELQQENARLKAQVDELTKQVSV 69 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45555667777777777777777776663
No 331
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=31.13 E-value=5.7e+02 Score=33.41 Aligned_cols=31 Identities=23% Similarity=0.321 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 669 RAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (875)
Q Consensus 669 ~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~ 699 (875)
..|-.||..|++.|...|..+..+..+|..+
T Consensus 846 ~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~ 876 (1174)
T KOG0933|consen 846 SSLKSELGNLEAKVDKVEKDVKKAQAELKDQ 876 (1174)
T ss_pred HHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Confidence 3455555555555555555555555544433
No 332
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=30.99 E-value=1.4e+02 Score=29.49 Aligned_cols=51 Identities=24% Similarity=0.379 Sum_probs=32.3
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 587 LEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALE 648 (875)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le 648 (875)
-|+-|.+||.|||. ||.- ++.+..-...|-.-|+-|+..|.+|+.--.-|.
T Consensus 23 WeiERaEmkarIa~-------LEGE----~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~ 73 (134)
T PF08232_consen 23 WEIERAEMKARIAF-------LEGE----RRGQENLKKDLKRRIKMLEYALKQERAKYKKLK 73 (134)
T ss_pred hHHHHHHHHHHHHH-------HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 35668899999973 3332 334444455566667777777777776554443
No 333
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=30.84 E-value=4.1e+02 Score=25.10 Aligned_cols=39 Identities=26% Similarity=0.300 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002837 613 ERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGL 651 (875)
Q Consensus 613 ~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al 651 (875)
..+.+.++++-..|.+...+|+.++.+=..+...|+..-
T Consensus 5 ~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~ 43 (129)
T cd00890 5 AAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLK 43 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344556666677777777778877777777777777765
No 334
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=30.84 E-value=2.6e+02 Score=30.58 Aligned_cols=27 Identities=19% Similarity=0.318 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002837 675 IALAEADVARLKQKVAELHHQLNQQRQ 701 (875)
Q Consensus 675 ia~~E~~v~~Le~~v~~l~~~l~~~~~ 701 (875)
++.||+|+.++++++..|+.++..-+.
T Consensus 95 n~ELE~elr~~~~~~~~L~~Ev~~L~~ 121 (248)
T PF08172_consen 95 NAELEEELRKQQQTISSLRREVESLRA 121 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666665555544
No 335
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=30.70 E-value=4.5e+02 Score=25.21 Aligned_cols=39 Identities=21% Similarity=0.232 Sum_probs=26.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002837 664 MDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQH 702 (875)
Q Consensus 664 lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~~ 702 (875)
...-...|-..|...+..|..++..|...+..|-+.+.+
T Consensus 66 ~~~f~~~l~~~i~~q~~~l~~~~~~~e~~r~~l~~a~~~ 104 (141)
T TIGR02473 66 YQRFIRQLDQRIQQQQQELALLQQEVEAKRERLLEARRE 104 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445677777777777777777777777777665443
No 336
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=30.38 E-value=5.3e+02 Score=32.29 Aligned_cols=78 Identities=26% Similarity=0.359 Sum_probs=52.3
Q ss_pred HHHHHHHHHH------HHHHHHHHHHHHH----Hhh-cCCCCCCC------CC--CCCChhHHHHHHHHHHHHHHHHHHH
Q 002837 626 LEQDVSRLQE------QLQAERDLRAALE----VGL-SMSSGQFS------SS--RGMDSKTRAELEEIALAEADVARLK 686 (875)
Q Consensus 626 LeqeV~~Lq~------qL~~E~~l~~~Le----~al-~~~~~~~~------~~--~~lp~~~~~ll~eia~~E~~v~~Le 686 (875)
|..+|.+++. .+++|++||+-=. .|| ....+++- .. ..--.+-++.++=-+.||.++++|+
T Consensus 673 L~~EveK~k~~a~EAvK~q~EtdlrCQhKIAeMVALMEKHK~qYDkiVEEkDaEL~~~k~KE~E~~s~k~sLE~ELs~lk 752 (786)
T PF05483_consen 673 LLGEVEKAKLTADEAVKLQEETDLRCQHKIAEMVALMEKHKHQYDKIVEEKDAELGLYKKKEQEQSSHKASLELELSNLK 752 (786)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666664 5788888875221 233 32333321 01 1223455677777889999999999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 002837 687 QKVAELHHQLNQQRQHH 703 (875)
Q Consensus 687 ~~v~~l~~~l~~~~~~~ 703 (875)
-.+..|+.||-.+|.+.
T Consensus 753 ~el~slK~QLk~e~~eK 769 (786)
T PF05483_consen 753 NELSSLKKQLKTERTEK 769 (786)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 99999999999998863
No 337
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=30.24 E-value=5.1e+02 Score=32.73 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 669 RAELEEIALAEADVARLKQKVAELHH 694 (875)
Q Consensus 669 ~~ll~eia~~E~~v~~Le~~v~~l~~ 694 (875)
..||.+.+-||+|-.-|.++|..|+.
T Consensus 93 ~rll~dyselEeENislQKqvs~Lk~ 118 (717)
T PF09730_consen 93 ARLLQDYSELEEENISLQKQVSVLKQ 118 (717)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 46888888888888888888888875
No 338
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=29.87 E-value=4.1e+02 Score=34.36 Aligned_cols=55 Identities=18% Similarity=0.330 Sum_probs=34.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hhcCCCcccchhhhcccccc
Q 002837 665 DSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ--------HHYGSLSDACDRYQNVQNHN 721 (875)
Q Consensus 665 p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~--------~~~~s~~~~~~~~~~~~~~~ 721 (875)
.....++..+++-++.++..++..+..+..++.+.+. ...|-.|..|. +.++.++
T Consensus 409 ~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~CPvCg--~~l~~~~ 471 (908)
T COG0419 409 QEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCG--QELPEEH 471 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC--CCCCcHH
Confidence 3444555556677777777777777777777777543 11467888887 4554443
No 339
>PRK11239 hypothetical protein; Provisional
Probab=29.72 E-value=78 Score=33.80 Aligned_cols=27 Identities=30% Similarity=0.358 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 670 AELEEIALAEADVARLKQKVAELHHQL 696 (875)
Q Consensus 670 ~ll~eia~~E~~v~~Le~~v~~l~~~l 696 (875)
+|-++|+.||++|+.|+.++..|..|+
T Consensus 187 ~Le~rv~~Le~eva~L~~~l~~l~~~~ 213 (215)
T PRK11239 187 DLQARVEALEIEVAELKQRLDSLLAHL 213 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555555555443
No 340
>PRK11546 zraP zinc resistance protein; Provisional
Probab=29.26 E-value=1.8e+02 Score=29.29 Aligned_cols=57 Identities=21% Similarity=0.247 Sum_probs=36.8
Q ss_pred hhhhHHHHHHH-HHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 002837 588 EITKNDLRHRI-AKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDL-RAALEV 649 (875)
Q Consensus 588 ~~~~~~~~~~~-~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l-~~~Le~ 649 (875)
-..-.+||.+| +|..-=||.+++. .+=.++-.+|-+|+..|+.+|.+++.. +..++.
T Consensus 60 ~~~t~~LRqqL~aKr~ELnALl~~~-----~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~~~~~k 118 (143)
T PRK11546 60 YAQTSALRQQLVSKRYEYNALLTAN-----PPDSSKINAVAKEMENLRQSLDELRVKRDIAMAE 118 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444566555 6666667766654 233445678999999999999988753 444444
No 341
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=29.20 E-value=5.8e+02 Score=28.29 Aligned_cols=84 Identities=14% Similarity=0.197 Sum_probs=48.6
Q ss_pred HHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHH
Q 002837 596 HRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQE---QLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAEL 672 (875)
Q Consensus 596 ~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~---qL~~E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll 672 (875)
..|+++.+.++- .+|.+.++.+-..|+.++.+|+. .+|...+++.. .+++.
T Consensus 155 ~~i~~~~~~~e~-----d~rnq~l~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~---------------------~~e~~ 208 (264)
T PF07246_consen 155 QLIKEKTQEREN-----DRRNQILSHEISNLTNELSNLRNDIDKFQEREDEKIL---------------------HEELE 208 (264)
T ss_pred HHHHHHhhchhh-----hhHHHHHHHHHHHhhhhHHHhhchhhhhhhhhhHHHH---------------------HHHHH
Confidence 334444444443 55566666555566666666665 33433333221 24666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 002837 673 EEIALAEADVARLKQKVAELHHQLNQQRQHHYG 705 (875)
Q Consensus 673 ~eia~~E~~v~~Le~~v~~l~~~l~~~~~~~~~ 705 (875)
+.++-+.++..+|+.+..+.+.....+|+...-
T Consensus 209 ~r~~~lr~~~~~l~~el~~aK~~~~~~~~~~~~ 241 (264)
T PF07246_consen 209 ARESGLRNESKWLEHELSDAKEDMIRLRNDISD 241 (264)
T ss_pred HhHhhhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 667767777777777777777777767665443
No 342
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=29.07 E-value=1.5e+02 Score=25.46 Aligned_cols=33 Identities=33% Similarity=0.413 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002837 618 ALHERRLALEQDVSRLQEQLQAERDLRAALEVG 650 (875)
Q Consensus 618 ~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~a 650 (875)
.|.+|...|+.|+.|++..+..=...|.|=+.-
T Consensus 25 EL~~RIa~L~aEI~R~~~~~~~K~a~r~AAeal 57 (59)
T PF06698_consen 25 ELEERIALLEAEIARLEAAIAKKSASRAAAEAL 57 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888889999999999998888877776543
No 343
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=28.92 E-value=1.6e+02 Score=30.72 Aligned_cols=19 Identities=21% Similarity=0.403 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002837 620 HERRLALEQDVSRLQEQLQ 638 (875)
Q Consensus 620 ~~~r~~LeqeV~~Lq~qL~ 638 (875)
-++..+|++++++|+.+|+
T Consensus 109 l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 109 LEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344556666666666665
No 344
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=28.88 E-value=6.6e+02 Score=32.05 Aligned_cols=18 Identities=17% Similarity=0.016 Sum_probs=13.7
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 002837 108 ETSEDLYEWKTALELALA 125 (875)
Q Consensus 108 dTeeE~~eWv~AI~~al~ 125 (875)
.+..+...|++.+..+..
T Consensus 38 ~~~~~i~~~l~~~~e~~~ 55 (771)
T TIGR01069 38 KSVEESKEIIIKLTALGS 55 (771)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 467788888888887765
No 345
>PRK12705 hypothetical protein; Provisional
Probab=28.63 E-value=5.5e+02 Score=31.12 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 617 QALHERRLALEQDVSRLQEQLQAE 640 (875)
Q Consensus 617 ~~~~~~r~~LeqeV~~Lq~qL~~E 640 (875)
...+.+|.++|+|+...+..++..
T Consensus 59 ~~~~~~~~~~e~e~~~~~~~~~~~ 82 (508)
T PRK12705 59 ELLLRERNQQRQEARREREELQRE 82 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777777777766544
No 346
>PF13514 AAA_27: AAA domain
Probab=28.51 E-value=7.5e+02 Score=32.79 Aligned_cols=39 Identities=26% Similarity=0.350 Sum_probs=27.3
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 660 SSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQ 698 (875)
Q Consensus 660 ~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~ 698 (875)
+|.........+..+++.++..+..++.++..|..++..
T Consensus 236 ~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~ 274 (1111)
T PF13514_consen 236 FPEDGAERLEQLEEELAEAQAQLERLQEELAQLEEELDA 274 (1111)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555556666777777778777777777777777665543
No 347
>KOG4140 consensus Nuclear protein Ataxin-7 [Chromatin structure and dynamics]
Probab=28.46 E-value=2.7e+02 Score=33.21 Aligned_cols=30 Identities=17% Similarity=0.144 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002837 623 RLALEQDVSRLQEQLQAERDLRAALEVGLS 652 (875)
Q Consensus 623 r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~ 652 (875)
|.++++|+..++.|||.|..-++-+.+-.+
T Consensus 290 ~r~~~~~~~~~~~Q~Q~~~~~~~~~~~~~~ 319 (659)
T KOG4140|consen 290 EREFDPDIHCGVIQLQTKKPCTRSLTCKTH 319 (659)
T ss_pred HhhhhhhhhhhhHhhccCCCcchhHHHhhh
Confidence 347899999999999999988888776554
No 348
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=28.37 E-value=2.3e+02 Score=29.93 Aligned_cols=47 Identities=30% Similarity=0.370 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 626 LEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAEL 692 (875)
Q Consensus 626 LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l 692 (875)
||+|-.+|+++|..|+.-+..+|.-. =.-++.|++|..++++=|.-|
T Consensus 139 LEkEReRLkq~lE~Ek~~~~~~EkE~--------------------~K~~~~l~eE~~k~K~~~l~L 185 (192)
T PF09727_consen 139 LEKERERLKQQLEQEKAQQKKLEKEH--------------------KKLVSQLEEERTKLKSFVLML 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998744 345678888988888766654
No 349
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=28.33 E-value=3.8e+02 Score=23.65 Aligned_cols=63 Identities=17% Similarity=0.280 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 625 ALEQDVSRLQEQL---QAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (875)
Q Consensus 625 ~LeqeV~~Lq~qL---~~E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~ 700 (875)
.||.+|..||.+| ......+-+.-..|..- --..+.-|..+=.++.+|..++..|+.+|-..|
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~E-------------Rd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRE-------------RDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4677777777666 23333333333333210 012233344445555566666666666654433
No 350
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.33 E-value=3e+02 Score=32.22 Aligned_cols=74 Identities=26% Similarity=0.356 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhcCCCCCCCCCCCCChhHHH----HHHHHHHHHHHHHH
Q 002837 612 LERRKQALHERRLALEQDVSRLQEQLQA---ERDLRAALEVGLSMSSGQFSSSRGMDSKTRA----ELEEIALAEADVAR 684 (875)
Q Consensus 612 ~~~rk~~~~~~r~~LeqeV~~Lq~qL~~---E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~----ll~eia~~E~~v~~ 684 (875)
++.-+.++.+++-.+|.||+.|.+.|.. +.+|-.-.+.|-. .-.|.++ .+.||+.|-...++
T Consensus 105 leqertq~qq~~e~~erEv~~l~~llsr~~~~~~Lenem~ka~E-----------d~eKlrelv~pmekeI~elk~kl~~ 173 (542)
T KOG0993|consen 105 LEQERTQLQQNEEKLEREVKALMELLSRGQYQLDLENEMDKAKE-----------DEEKLRELVTPMEKEINELKKKLAK 173 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHh-----------hHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3445566777788888888888777654 3333333333322 1122222 24566666666666
Q ss_pred HHHHHHHHHHHH
Q 002837 685 LKQKVAELHHQL 696 (875)
Q Consensus 685 Le~~v~~l~~~l 696 (875)
-|+.+.+|...+
T Consensus 174 aE~~i~El~k~~ 185 (542)
T KOG0993|consen 174 AEQRIDELSKAK 185 (542)
T ss_pred HHHHHHHHHhhh
Confidence 677777766433
No 351
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=28.31 E-value=4.6e+02 Score=25.61 Aligned_cols=67 Identities=19% Similarity=0.303 Sum_probs=43.0
Q ss_pred HHhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEV 649 (875)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~ 649 (875)
.|+.|..--.+++..|+.=-..-...+..|+.-+....++|..|+.++..++.++.+=..=..+|-.
T Consensus 60 ~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~ 126 (132)
T PF07926_consen 60 ELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHD 126 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444556666544444445566667777777888888999999888888765555555543
No 352
>PRK12787 fliX flagellar assembly regulator FliX; Reviewed
Probab=27.71 E-value=2.6e+02 Score=28.02 Aligned_cols=26 Identities=38% Similarity=0.469 Sum_probs=21.7
Q ss_pred CCCChhHHHHHHHHHH-HHHHHHHHHH
Q 002837 662 RGMDSKTRAELEEIAL-AEADVARLKQ 687 (875)
Q Consensus 662 ~~lp~~~~~ll~eia~-~E~~v~~Le~ 687 (875)
..-++.-.++|.||.+ +|.|++||++
T Consensus 111 ~s~DP~L~~vL~EIElRa~VELAKl~~ 137 (138)
T PRK12787 111 ASGDPGLDAVLDEIELRVEVELAKLGQ 137 (138)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHhcc
Confidence 4557888899999987 7899999875
No 353
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=27.57 E-value=8.2e+02 Score=31.37 Aligned_cols=61 Identities=30% Similarity=0.274 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002837 623 RLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQH 702 (875)
Q Consensus 623 r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~~ 702 (875)
+.+|+.+-+.||.+|+....-=--+|+|+. |+||-++|+++..+-.+--+|+..--++|..
T Consensus 672 ~eel~Ke~kElq~rL~~q~KkiDh~ERA~R-------------------~EeiPL~e~~~~~~~~~d~e~~e~~Ek~Ri~ 732 (988)
T KOG2072|consen 672 IEELEKERKELQSRLQYQEKKIDHLERAKR-------------------LEEIPLIEKAYDERQEEDRELYEAREKQRIE 732 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHH-------------------HHhhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 455777777777777766555555666655 5566666666655555555555544444443
No 354
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=27.56 E-value=7.8e+02 Score=26.27 Aligned_cols=36 Identities=11% Similarity=0.219 Sum_probs=29.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 664 MDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (875)
Q Consensus 664 lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~ 699 (875)
|-.+-++++.-...+|.++..||++|..|+.+..++
T Consensus 180 Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~ 215 (221)
T PF05700_consen 180 LEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAEL 215 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334667899999999999999999999999876554
No 355
>TIGR03755 conj_TIGR03755 integrating conjugative element protein, PFL_4711 family. Members of this protein family are found in genomic regions associated with conjugative transfer and integrated TOL-like plasmids. The specific function is unknown.
Probab=27.55 E-value=1.1e+02 Score=35.82 Aligned_cols=61 Identities=21% Similarity=0.230 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCC---CCCC--CCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 002837 629 DVSRLQEQLQAERDLRAALEVGLSMSSGQ---FSSS--RGMDSKTRAELEEIALAEADVARLKQKV 689 (875)
Q Consensus 629 eV~~Lq~qL~~E~~l~~~Le~al~~~~~~---~~~~--~~lp~~~~~ll~eia~~E~~v~~Le~~v 689 (875)
|..-|-.+|-.|..|..+||.||-+..-. ...| ...+.-..++=..|+.|.-||.+|+-++
T Consensus 308 dq~~l~~RLA~EiA~a~~~ekALl~RR~L~tG~~ePnva~~~~A~~~~~~~i~~LDrEI~~Lk~E~ 373 (418)
T TIGR03755 308 DQSLLVQRLASEIALADTLEKALLMRRMLLTGLQEPNVAANKPAQQEVDKAIDKLDREINNLKTEL 373 (418)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778899999999999999998543222 2234 3344444555555666666666665554
No 356
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=27.03 E-value=2.3e+02 Score=30.00 Aligned_cols=26 Identities=15% Similarity=0.376 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 674 EIALAEADVARLKQKVAELHHQLNQQ 699 (875)
Q Consensus 674 eia~~E~~v~~Le~~v~~l~~~l~~~ 699 (875)
.+..+.+||..+|+||.-|..-|..-
T Consensus 161 ~l~~v~~Dl~~ie~QV~~Le~~L~~k 186 (195)
T PF12761_consen 161 NLKSVREDLDTIEEQVDGLESHLSSK 186 (195)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999888543
No 357
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=27.00 E-value=1.5e+02 Score=27.55 Aligned_cols=34 Identities=26% Similarity=0.460 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 610 ASLERRKQALHERRLALEQDVSRLQEQLQAERDL 643 (875)
Q Consensus 610 ~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l 643 (875)
+.-++|-..++..-.+|.+||.+|+.+|..|+.=
T Consensus 45 ~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~E 78 (87)
T PF12709_consen 45 ARWEKKVDELENENKALKRENEQLKKKLDTEREE 78 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777788888889999999999999988753
No 358
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=26.62 E-value=3.5e+02 Score=25.02 Aligned_cols=40 Identities=25% Similarity=0.430 Sum_probs=28.7
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 002837 662 RGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQHHYGSL 707 (875)
Q Consensus 662 ~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~~~~~s~ 707 (875)
..|++..++.|+ .|..-|..++.....+|.+-|.+|.-++
T Consensus 31 ~eLs~e~R~~lE------~E~~~l~~~l~~~E~eL~~LrkENrK~~ 70 (85)
T PF15188_consen 31 RELSPEARRSLE------KELNELKEKLENNEKELKLLRKENRKSM 70 (85)
T ss_pred cCCChHHHHHHH------HHHHHHHHHhhccHHHHHHHHHhhhhhH
Confidence 567888887665 6666677777777777777777776655
No 359
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=26.62 E-value=3.4e+02 Score=36.03 Aligned_cols=22 Identities=27% Similarity=0.155 Sum_probs=12.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHH
Q 002837 665 DSKTRAELEEIALAEADVARLK 686 (875)
Q Consensus 665 p~~~~~ll~eia~~E~~v~~Le 686 (875)
+.....|-+|.+.++..+..||
T Consensus 172 ~a~~~~lqae~~~l~~~~~~l~ 193 (1109)
T PRK10929 172 QAQLTALQAESAALKALVDELE 193 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455667776666555444
No 360
>COG3750 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.53 E-value=1.4e+02 Score=27.16 Aligned_cols=40 Identities=33% Similarity=0.443 Sum_probs=29.3
Q ss_pred HHhHhhhhhHHHHHHH---HHHhhhhh----hhhhhHHHHHHHHHHH
Q 002837 583 AIQRLEITKNDLRHRI---AKEARGNA----ILQASLERRKQALHER 622 (875)
Q Consensus 583 ~~~~~~~~~~~~~~~~---~~~~~~n~----~~q~~~~~rk~~~~~~ 622 (875)
-|+|||.-|.++...| -.||||+- ++..-+.-||....+|
T Consensus 22 rIERlEeEk~~i~~dikdvy~eakg~GFDvKa~r~iirlrK~D~~er 68 (85)
T COG3750 22 RIERLEEEKKTIADDIKDVYAEAKGHGFDVKAVRTIIRLRKLDKAER 68 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHhhhHHHH
Confidence 4899999999999887 56889884 4555566666655444
No 361
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=26.45 E-value=4.3e+02 Score=29.43 Aligned_cols=31 Identities=23% Similarity=0.403 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 670 AELEEIALAEADVARLKQKVAELHHQLNQQR 700 (875)
Q Consensus 670 ~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~ 700 (875)
++++|++..|.+|..+.++|.+++.+|.+--
T Consensus 211 ~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~ 241 (269)
T PF05278_consen 211 ELEEELKQKEKEVKEIKERITEMKGRLGELE 241 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555443
No 362
>PF07321 YscO: Type III secretion protein YscO; InterPro: IPR009929 This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis [].
Probab=26.40 E-value=7e+02 Score=25.37 Aligned_cols=71 Identities=30% Similarity=0.324 Sum_probs=57.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 002837 610 ASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKV 689 (875)
Q Consensus 610 ~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v 689 (875)
..+......+..||.-..++..+|=..++.-.-...-|+. ...+|+.|-+-+..||+++
T Consensus 32 ~~~~~a~~~l~dyr~wr~~ee~rly~~~~~~~v~~kele~---------------------~~~qv~~Lr~~e~~le~~~ 90 (152)
T PF07321_consen 32 AALQQAEQELADYRQWRQREEERLYAEIQGKVVSLKELEK---------------------WQQQVASLREREAELEQQL 90 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHH---------------------HHHHHHHHHHhHHHHHHHH
Confidence 3446667788899999999988888888877766666654 5578999999999999999
Q ss_pred HHHHHHHHHHHh
Q 002837 690 AELHHQLNQQRQ 701 (875)
Q Consensus 690 ~~l~~~l~~~~~ 701 (875)
.+...++.++++
T Consensus 91 ~~a~~~~~~e~~ 102 (152)
T PF07321_consen 91 AEAEEQLEQERQ 102 (152)
T ss_pred HHHHHHHHHHHH
Confidence 999999988876
No 363
>PF07957 DUF3294: Protein of unknown function (DUF3294); InterPro: IPR012917 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This is a family of mitochondrial ribosomal proteins, which appears to be fungal specific [].
Probab=26.32 E-value=1.4e+02 Score=31.96 Aligned_cols=34 Identities=29% Similarity=0.325 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHhhcCCCCCC
Q 002837 625 ALEQDVSRLQEQLQ--AERDLRAALEVGLSMSSGQF 658 (875)
Q Consensus 625 ~LeqeV~~Lq~qL~--~E~~l~~~Le~al~~~~~~~ 658 (875)
.|-|.|.+||.||. +|+++|++.-+-.......+
T Consensus 74 DLVQLV~ELQgQLd~lEeRsiRR~~NS~~~~~~d~l 109 (216)
T PF07957_consen 74 DLVQLVGELQGQLDNLEERSIRRTVNSTKTDDDDLL 109 (216)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccccc
Confidence 48899999999996 79999999988776665533
No 364
>PRK00106 hypothetical protein; Provisional
Probab=26.26 E-value=1.1e+03 Score=28.78 Aligned_cols=98 Identities=17% Similarity=0.212 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHhhhh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 002837 587 LEITKNDLRHRIAKEARGN-AILQASLERRKQALHERRLALEQDVSRLQ-EQLQAERDLRAALEVGLSMSSGQFSSSRGM 664 (875)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~n-~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq-~qL~~E~~l~~~Le~al~~~~~~~~~~~~l 664 (875)
++.++.+-+..+.+-.+.. +..+.....-++...++|.++++++..-+ +-.+.|..|..-.+. |.
T Consensus 48 leeAe~eAe~I~keA~~EAke~~ke~~lEaeeEi~~~R~ElEkel~eEr~rL~qrE~rL~qREE~-Le------------ 114 (535)
T PRK00106 48 RGKAERDAEHIKKTAKRESKALKKELLLEAKEEARKYREEIEQEFKSERQELKQIESRLTERATS-LD------------ 114 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH------------
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002837 665 DSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQH 702 (875)
Q Consensus 665 p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~~ 702 (875)
.-..++.--|.++...++.+.....+|-+...+
T Consensus 115 -----kRee~LekrE~eLe~kekeLe~reeeLee~~~~ 147 (535)
T PRK00106 115 -----RKDENLSSKEKTLESKEQSLTDKSKHIDEREEQ 147 (535)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 365
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=26.23 E-value=3.4e+02 Score=28.54 Aligned_cols=64 Identities=27% Similarity=0.316 Sum_probs=46.6
Q ss_pred HHhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHH--HH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHER--RL-ALEQDVSRLQEQLQAERDLRAALEV 649 (875)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~--r~-~LeqeV~~Lq~qL~~E~~l~~~Le~ 649 (875)
+|+..+..+.+|+...+.=-+--|-|+-+.|+||..+++. |. +|+++..-|+++ +..+|.-|..
T Consensus 75 a~~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~---~e~lr~el~k 141 (203)
T KOG3433|consen 75 AICDRKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKI---LESLRWELAK 141 (203)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 6777888888888888766666678888999999877543 55 888888888883 3445554443
No 366
>PF10073 DUF2312: Uncharacterized protein conserved in bacteria (DUF2312); InterPro: IPR018753 This entry is represented by Azospirillum phage Cd, Gp10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family of hypothetical bacterial proteins have no known function.
Probab=26.21 E-value=2.1e+02 Score=25.82 Aligned_cols=36 Identities=36% Similarity=0.525 Sum_probs=25.6
Q ss_pred HHhHhhhhhHHHHHHHH---HHhhhhh----hhhhhHHHHHHH
Q 002837 583 AIQRLEITKNDLRHRIA---KEARGNA----ILQASLERRKQA 618 (875)
Q Consensus 583 ~~~~~~~~~~~~~~~~~---~~~~~n~----~~q~~~~~rk~~ 618 (875)
-|+|||.-|..+...|. .|||+|- ++-.-+.-||..
T Consensus 12 RiErLEeEk~~i~~dikdVyaEAK~~GfD~K~lr~ii~lRk~d 54 (74)
T PF10073_consen 12 RIERLEEEKKAISDDIKDVYAEAKGNGFDTKALRQIIRLRKKD 54 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHcCC
Confidence 48999999999998884 5888874 444444555544
No 367
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=26.19 E-value=8.5e+02 Score=26.26 Aligned_cols=78 Identities=23% Similarity=0.349 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHH-HHHHHHHHHHHHHHHH
Q 002837 613 ERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEI-ALAEADVARLKQKVAE 691 (875)
Q Consensus 613 ~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~ei-a~~E~~v~~Le~~v~~ 691 (875)
..|..........|..+|..|+..+..|+.-|..-|.-+-. +..++..-| ..++.+....|+.+.+
T Consensus 113 ~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~k-------------rl~e~~~~l~~~i~~Ek~~Re~~~~~ 179 (247)
T PF06705_consen 113 EERPQDIEELNQELVRELNELQEAFENERNEREEREENILK-------------RLEEEENRLQEKIEKEKNTRESKLSE 179 (247)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556678888888888888888887766654421 111222221 2456666667777777
Q ss_pred HHHHHHHHHhhh
Q 002837 692 LHHQLNQQRQHH 703 (875)
Q Consensus 692 l~~~l~~~~~~~ 703 (875)
|+..|.+-+..+
T Consensus 180 l~~~le~~~~~~ 191 (247)
T PF06705_consen 180 LRSELEEVKRRR 191 (247)
T ss_pred HHHHHHHHHHHH
Confidence 777766665533
No 368
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=26.11 E-value=5.5e+02 Score=31.79 Aligned_cols=16 Identities=31% Similarity=0.617 Sum_probs=10.0
Q ss_pred HHhHhhhhhHHHHHHH
Q 002837 583 AIQRLEITKNDLRHRI 598 (875)
Q Consensus 583 ~~~~~~~~~~~~~~~~ 598 (875)
-..|||..|.-||-++
T Consensus 112 rLaRLe~dkesL~LQv 127 (861)
T KOG1899|consen 112 RLARLEMDKESLQLQV 127 (861)
T ss_pred HHHHHhcchhhheehH
Confidence 4556777777665544
No 369
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.90 E-value=9.4e+02 Score=30.71 Aligned_cols=111 Identities=19% Similarity=0.308 Sum_probs=0.0
Q ss_pred hHHHHHhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 002837 579 EEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQ-----ALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSM 653 (875)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~-----~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~ 653 (875)
|.--+|+|.|++|.+|...-.-|---|-+-+....+-++ -+..+...|+++.+-|+.+||+=-.--.=.++.+.
T Consensus 390 erkkeie~rEaar~ElEkqRqlewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~t- 468 (1118)
T KOG1029|consen 390 ERKKEIERREAAREELEKQRQLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDIT- 468 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccc-
Q ss_pred CCCCCCCCCCCChhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002837 654 SSGQFSSSRGMDSKTRAELEE----IALAEADVARLKQKVAELHHQLNQQRQHH 703 (875)
Q Consensus 654 ~~~~~~~~~~lp~~~~~ll~e----ia~~E~~v~~Le~~v~~l~~~l~~~~~~~ 703 (875)
..+..|++ +.+.=.|+..|.+++.+++..|.+--.++
T Consensus 469 -------------t~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ek 509 (1118)
T KOG1029|consen 469 -------------TQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEK 509 (1118)
T ss_pred -------------hHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
No 370
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=25.63 E-value=3.8e+02 Score=30.30 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002837 670 AELEEIALAEADVARLKQ 687 (875)
Q Consensus 670 ~ll~eia~~E~~v~~Le~ 687 (875)
++..||+.+|++...|++
T Consensus 75 ~l~~el~~le~e~~~l~~ 92 (314)
T PF04111_consen 75 ELDQELEELEEELEELDE 92 (314)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444455555555444433
No 371
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=25.62 E-value=9.8e+02 Score=32.61 Aligned_cols=14 Identities=21% Similarity=0.539 Sum_probs=7.2
Q ss_pred hhHHHHHHHHHHHh
Q 002837 837 DFFKERRSQLMEQL 850 (875)
Q Consensus 837 ~f~kerrsq~~~~~ 850 (875)
+.|.||=-+|.+++
T Consensus 1100 ~ll~e~er~l~E~~ 1113 (1353)
T TIGR02680 1100 ELLTARERELLENH 1113 (1353)
T ss_pred HHhhHHHHHHHHHH
Confidence 45555555554443
No 372
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=25.48 E-value=4.4e+02 Score=25.49 Aligned_cols=63 Identities=24% Similarity=0.374 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 619 LHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (875)
Q Consensus 619 ~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~ 694 (875)
+|+.=-.|.++|.+|++-+. +...++=. +-+++-..+-||...|+-||..+..|+..|.+++-
T Consensus 6 ~~~q~~~l~~~v~~lRed~r------~SEdrsa~-------SRa~mhrRlDElV~Rv~~lEs~~~~lk~dVsemKp 68 (112)
T PF07439_consen 6 LHQQLGTLNAEVKELREDIR------RSEDRSAA-------SRASMHRRLDELVERVTTLESSVSTLKADVSEMKP 68 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHhhh-------hhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHhccc
Confidence 45555667788888877665 22222110 01334456679999999999999999999988764
No 373
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=25.24 E-value=1.2e+03 Score=27.82 Aligned_cols=108 Identities=28% Similarity=0.321 Sum_probs=65.6
Q ss_pred HHHHHhHhhhhhHHHHHHHHHHhhhhhhh---hhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Q 002837 580 EELAIQRLEITKNDLRHRIAKEARGNAIL---QASLERRKQ---ALHERRLALEQDVSRLQEQLQAERDLRAALEVG--- 650 (875)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~---q~~~~~rk~---~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~a--- 650 (875)
|=...||.|..--|||.|+.|+--+|..+ --.|+++-. .|++-|.-+|.+-.+ + +=..||.+|++|
T Consensus 250 dle~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~r--k---elE~lR~~L~kAEke 324 (575)
T KOG4403|consen 250 DLEGLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSR--K---ELEQLRVALEKAEKE 324 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHH--H---HHHHHHHHHHHHHHH
Confidence 44567889999999999997765554332 223343332 345555556655544 2 335688899887
Q ss_pred hcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 651 LSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (875)
Q Consensus 651 l~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~ 699 (875)
|...+ +-+-|...|..|.= .-|.||.+++.|-.+...||-..
T Consensus 325 le~nS-----~wsaP~aLQ~wLq~--T~E~E~q~~~kkrqnaekql~~A 366 (575)
T KOG4403|consen 325 LEANS-----SWSAPLALQKWLQL--THEVEVQYYNKKRQNAEKQLKEA 366 (575)
T ss_pred HHhcc-----CCCCcHHHHHHHHH--HHHHHHHHHHHHhhhHHHHHHHH
Confidence 33222 35567778888863 34666777776665555555443
No 374
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=25.12 E-value=5.1e+02 Score=24.15 Aligned_cols=31 Identities=19% Similarity=0.343 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 670 AELEEIALAEADVARLKQKVAELHHQLNQQR 700 (875)
Q Consensus 670 ~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~ 700 (875)
.|=..+..+|.+|.+|+.++..+..++...+
T Consensus 67 ~Le~~~e~le~~i~~l~~~~~~l~~~~~elk 97 (105)
T cd00632 67 ELKERLETIELRIKRLERQEEDLQEKLKELQ 97 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334566777777777777777777665543
No 375
>PRK11239 hypothetical protein; Provisional
Probab=25.08 E-value=93 Score=33.26 Aligned_cols=29 Identities=28% Similarity=0.229 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002837 673 EEIALAEADVARLKQKVAELHHQLNQQRQ 701 (875)
Q Consensus 673 ~eia~~E~~v~~Le~~v~~l~~~l~~~~~ 701 (875)
..++.||++|..||++|..|+.+|.+-+.
T Consensus 183 ~~~~~Le~rv~~Le~eva~L~~~l~~l~~ 211 (215)
T PRK11239 183 AVDGDLQARVEALEIEVAELKQRLDSLLA 211 (215)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677999999999999999999887655
No 376
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=25.03 E-value=6.9e+02 Score=32.89 Aligned_cols=58 Identities=19% Similarity=0.291 Sum_probs=27.8
Q ss_pred HHHhHhhhhhHHHHHHHH------HHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 582 LAIQRLEITKNDLRHRIA------KEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERD 642 (875)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~------~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~ 642 (875)
..|+.||.--.+||..|- .++| .-+..++++-+.+...+.+++....++...+.+.++
T Consensus 661 ~~ie~le~e~~~l~~~~~~l~~~~~~~e---~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n 724 (1074)
T KOG0250|consen 661 DEIEDLEREASRLQKEILELENQRREAE---KNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKN 724 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356666666666666442 1121 123334444444555555555555555444444443
No 377
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=24.97 E-value=1.3e+03 Score=27.90 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=16.2
Q ss_pred hhhhhHHHHHHHHHHHhhhc-CCCC
Q 002837 834 TRLDFFKERRSQLMEQLHNL-DLNY 857 (875)
Q Consensus 834 ~rl~f~kerrsq~~~~~~~~-d~~~ 857 (875)
.|-.++|+-...+-+-|..| .|.|
T Consensus 275 ~r~~~Lk~H~~svr~HI~~Ls~K~Y 299 (475)
T PRK10361 275 TRESALQEHIASVRNHIRLLGRKDY 299 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCcc
Confidence 46667787777777766655 4555
No 378
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=24.96 E-value=1.2e+03 Score=28.32 Aligned_cols=21 Identities=19% Similarity=0.436 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHhhhcCCCccc
Q 002837 690 AELHHQLNQQRQHHYGSLSDA 710 (875)
Q Consensus 690 ~~l~~~l~~~~~~~~~s~~~~ 710 (875)
..+...+-+||+.+.+-+...
T Consensus 363 ~~i~~~v~~Er~~~~~~l~~~ 383 (582)
T PF09731_consen 363 KEIKEKVEQERNGRLAKLAEL 383 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777666655443
No 379
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=24.55 E-value=9.4e+02 Score=30.80 Aligned_cols=61 Identities=20% Similarity=0.254 Sum_probs=42.3
Q ss_pred hHHHHHhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH--HH---HHHHHHHHHHHHHHHH
Q 002837 579 EEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHE--RR---LALEQDVSRLQEQLQA 639 (875)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~--~r---~~LeqeV~~Lq~qL~~ 639 (875)
+-|--|+-|-+-|..|+.+.-.++-.|.-+|-.-.++..-..+ || ..||.|...++.||..
T Consensus 45 ~aeniiqdlrserdalhe~lvdkaglneSviie~sk~vstqetriyRrdv~llEddlk~~~sQiri 110 (1265)
T KOG0976|consen 45 DAENIIQDLRSERDALHESLVDKAGLNESVIIEQSKKVSTQETRIYRRDVNLLEDDLKHHESQIRI 110 (1265)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhccchhhhhhcchhhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4566789999999999999999999999888765444432222 22 2366666666666543
No 380
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=24.18 E-value=1.7e+02 Score=34.95 Aligned_cols=21 Identities=24% Similarity=0.251 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002837 671 ELEEIALAEADVARLKQKVAE 691 (875)
Q Consensus 671 ll~eia~~E~~v~~Le~~v~~ 691 (875)
+=+.|..+|+|+..|++++..
T Consensus 102 le~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 102 DQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334555667777777777643
No 381
>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]
Probab=24.16 E-value=1.2e+02 Score=36.23 Aligned_cols=80 Identities=19% Similarity=0.223 Sum_probs=48.8
Q ss_pred cEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEEEEcCCCCCceEEEEeCCHHHHHHH
Q 002837 37 WKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEW 116 (875)
Q Consensus 37 WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiIt~~~~~gRty~LqAdTeeE~~eW 116 (875)
-+-|||+|-.+.|.|+.-.+... ..-.+..+++.|+.++.-.. .+..+..|.|.- ..-.-....+..+.++++|
T Consensus 325 ~~dRy~~LF~~~llflsvs~rMs-~fIyegKlp~tG~iV~klEd---te~~~nafeis~--~ti~rIv~~c~~~~~l~~w 398 (661)
T KOG2070|consen 325 EKDRYLLLFPNVLLFLSVSPRMS-GFIYEGKLPTTGMIVTKLED---TENHRNAFEISG--STIERIVVSCNNQQDLQEW 398 (661)
T ss_pred hhhheeeeccceeeeeEeccccc-hhhhccccccceeEEeehhh---hhcccccccccc--cchhheeeccCChHHHHHH
Confidence 35899999999999888665432 11112335566655554222 122233344431 1123356678999999999
Q ss_pred HHHHHH
Q 002837 117 KTALEL 122 (875)
Q Consensus 117 v~AI~~ 122 (875)
+.+++.
T Consensus 399 ve~ln~ 404 (661)
T KOG2070|consen 399 VEHLNK 404 (661)
T ss_pred HHHhhh
Confidence 999996
No 382
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=24.14 E-value=1e+03 Score=27.99 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 671 ELEEIALAEADVARLKQKVAELHHQL 696 (875)
Q Consensus 671 ll~eia~~E~~v~~Le~~v~~l~~~l 696 (875)
...++..++.++..++.++...+.+|
T Consensus 289 ~~~~l~~~~~~l~~~~~~l~~a~~~l 314 (457)
T TIGR01000 289 VKQEITDLNQKLLELESKIKSLKEDS 314 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 383
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=24.01 E-value=1.8e+02 Score=36.13 Aligned_cols=41 Identities=27% Similarity=0.499 Sum_probs=27.2
Q ss_pred HHHhhhhhhhhhhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 599 AKEARGNAILQASLERR-----KQALHERRLALEQDVSRLQEQLQA 639 (875)
Q Consensus 599 ~~~~~~n~~~q~~~~~r-----k~~~~~~r~~LeqeV~~Lq~qL~~ 639 (875)
-+-+|||-.+-...... +...-.+|.+|+++|++|+..+++
T Consensus 52 V~~iRgNl~~~~~~~~~~~~~~~e~~~~~r~~L~~everLraei~~ 97 (632)
T PF14817_consen 52 VRKIRGNLLWYGHQQSKERKKSRENEARRRRELEKEVERLRAEIQE 97 (632)
T ss_pred HHHHHcceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45578887754443322 233344789999999999987654
No 384
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=23.92 E-value=4.6e+02 Score=32.76 Aligned_cols=88 Identities=23% Similarity=0.239 Sum_probs=52.9
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH--------------H-HHHHHH
Q 002837 593 DLRHRIAKEARGNAILQASLERRKQAL-----------HERRLALEQDVSRLQEQLQA--------------E-RDLRAA 646 (875)
Q Consensus 593 ~~~~~~~~~~~~n~~~q~~~~~rk~~~-----------~~~r~~LeqeV~~Lq~qL~~--------------E-~~l~~~ 646 (875)
.+|.+|+.----|+.+||++..-+..+ +++...|=|.|..|+..|+. | .+|.+-
T Consensus 541 ~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrR 620 (961)
T KOG4673|consen 541 NSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRR 620 (961)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666544445778888875555433 45555677777777776653 2 123344
Q ss_pred HHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHH
Q 002837 647 LEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVA 683 (875)
Q Consensus 647 Le~al~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~ 683 (875)
|+.|=.|.- .+...+|.-|+-||--|..|-++..
T Consensus 621 lqaaE~R~e---el~q~v~~TTrPLlRQIE~lQ~tl~ 654 (961)
T KOG4673|consen 621 LQAAERRCE---ELIQQVPETTRPLLRQIEALQETLS 654 (961)
T ss_pred HHHHHHHHH---HHHhhccccccHHHHHHHHHHHHHh
Confidence 444433221 2345677788889999988877654
No 385
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=23.65 E-value=5.2e+02 Score=26.89 Aligned_cols=95 Identities=19% Similarity=0.237 Sum_probs=25.0
Q ss_pred HHhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002837 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHER----------RLALEQDVSRLQEQLQAERDLRAALEVGLS 652 (875)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~----------r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~ 652 (875)
.|+-++..-..||.-++.=-|.++.++..|-.--..+.+. -..|+.++..|+.++..=..--.-++.++
T Consensus 68 ~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~- 146 (194)
T PF08614_consen 68 QISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKAN- 146 (194)
T ss_dssp ----------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred cccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3444555555566666666677777666653322222222 23344555555444322111111122222
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 653 MSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (875)
Q Consensus 653 ~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~ 694 (875)
.-|-.|+..|-.+..-||+++..|..
T Consensus 147 ----------------e~l~DE~~~L~l~~~~~e~k~~~l~~ 172 (194)
T PF08614_consen 147 ----------------EILQDELQALQLQLNMLEEKLRKLEE 172 (194)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24555666666666666666666554
No 386
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=23.26 E-value=3e+02 Score=30.57 Aligned_cols=84 Identities=18% Similarity=0.232 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 002837 624 LALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEE-------IALAEADVARLKQKVAELHHQL 696 (875)
Q Consensus 624 ~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~e-------ia~~E~~v~~Le~~v~~l~~~l 696 (875)
++|-+-=+.|-..|.+|..+|.+...|+.++.-.-.+-..|=.-++++..+ |.-|+.|..+||.|+.--+..|
T Consensus 127 seit~~GA~LydlL~kE~~lr~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~EL 206 (267)
T PF10234_consen 127 SEITQRGASLYDLLGKEVELREERQRALARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQEL 206 (267)
T ss_pred HHHHHHHHHHHHHHhchHhHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777788888999999999988888875532222223333344444444 4444555555666665555555
Q ss_pred HHHHhhhcCCCc
Q 002837 697 NQQRQHHYGSLS 708 (875)
Q Consensus 697 ~~~~~~~~~s~~ 708 (875)
-+.+. |.-+++
T Consensus 207 ER~qK-RL~sLq 217 (267)
T PF10234_consen 207 ERNQK-RLQSLQ 217 (267)
T ss_pred HHHHH-HHHHHH
Confidence 44433 555554
No 387
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=23.15 E-value=86 Score=39.30 Aligned_cols=81 Identities=26% Similarity=0.367 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC----CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 618 ALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFS----SSRGMDSKTRAELEEIALAEADVARLKQKVAELH 693 (875)
Q Consensus 618 ~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~----~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~ 693 (875)
.++.++.+|+..|..|.+.|..-......++..+........ ....+..+...|-.+|..||.++.+|++++..|.
T Consensus 451 ~~~~~~~ele~~l~~l~~~l~~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le 530 (722)
T PF05557_consen 451 LVDEYKAELEAQLEELEEELSEQKQRNETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELE 530 (722)
T ss_dssp -------------------------------------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777778878888888887766666666665543222221 1133455667788899999999999999999999
Q ss_pred HHHHH
Q 002837 694 HQLNQ 698 (875)
Q Consensus 694 ~~l~~ 698 (875)
.+|.+
T Consensus 531 ~~l~~ 535 (722)
T PF05557_consen 531 SELEK 535 (722)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99975
No 388
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=23.09 E-value=3e+02 Score=33.88 Aligned_cols=60 Identities=25% Similarity=0.315 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 615 RKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (875)
Q Consensus 615 rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~ 694 (875)
+++.--++-+.||.||.+||++= ..||.|=..+..++-.+.+|+..|++
T Consensus 505 CRKRKLd~I~nLE~ev~~l~~eK-------------------------------eqLl~Er~~~d~~L~~~kqqls~L~~ 553 (604)
T KOG3863|consen 505 CRKRKLDCILNLEDEVEKLQKEK-------------------------------EQLLRERDELDSTLGVMKQQLSELYQ 553 (604)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566788999999998752 25677777777888889999999999
Q ss_pred HHHHHHhhhcC
Q 002837 695 QLNQQRQHHYG 705 (875)
Q Consensus 695 ~l~~~~~~~~~ 705 (875)
.++++-....|
T Consensus 554 ~Vf~~lrd~eg 564 (604)
T KOG3863|consen 554 EVFQQLRDEEG 564 (604)
T ss_pred HHHHHHhcccc
Confidence 99998765443
No 389
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=23.06 E-value=5.7e+02 Score=24.19 Aligned_cols=70 Identities=16% Similarity=0.272 Sum_probs=45.2
Q ss_pred HHhHhhhhhHHHHHHHHHHhhhhhhhhhh--------HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002837 583 AIQRLEITKNDLRHRIAKEARGNAILQAS--------LERRKQALHER-RLALEQDVSRLQEQLQAERDLRAALEVGLS 652 (875)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~n~~~q~~--------~~~rk~~~~~~-r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~ 652 (875)
+|.++-..-.+++.+|...-+.|-.+... ++-.++.-..+ ...+.+.+++++..|+.++..-.++.+.+.
T Consensus 4 ~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~~~~~~~~l~~~~~~lk~~r~~~~v~k~v~q 82 (106)
T PF05837_consen 4 EILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQREDEELSEKLEKLEKELKKSRQRWRVMKNVFQ 82 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777776555544332211 11111111112 357889999999999999999999998775
No 390
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=22.96 E-value=1.8e+02 Score=31.64 Aligned_cols=82 Identities=21% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 616 KQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQ 695 (875)
Q Consensus 616 k~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~ 695 (875)
++.++-+-..|--.|..||-||+..-..|+-|..+++ -+.-+-..|-.|.-||...--.+.-+|+=|+.|| .--.+
T Consensus 11 eed~rL~v~~LhHQvlTLqcQLRDQ~~ahreLQas~d---Ea~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~-AslV~ 86 (277)
T PF15030_consen 11 EEDLRLRVQQLHHQVLTLQCQLRDQGSAHRELQASRD---EATRLQDELQGKLEELQKKQHEANLAVTPLKAKL-ASLVQ 86 (277)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhHhhccchHHHHH-HHHHH
Q ss_pred HHHHHh
Q 002837 696 LNQQRQ 701 (875)
Q Consensus 696 l~~~~~ 701 (875)
=+++||
T Consensus 87 kc~eRn 92 (277)
T PF15030_consen 87 KCRERN 92 (277)
T ss_pred HHHHHH
No 391
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=22.87 E-value=5e+02 Score=25.69 Aligned_cols=79 Identities=19% Similarity=0.268 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h--cC-CCCCCCCC-----C-------CCChhHHHHHHHHHHHHHH
Q 002837 618 ALHERRLALEQDVSRLQEQLQAERDLRAALEVG-L--SM-SSGQFSSS-----R-------GMDSKTRAELEEIALAEAD 681 (875)
Q Consensus 618 ~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~a-l--~~-~~~~~~~~-----~-------~lp~~~~~ll~eia~~E~~ 681 (875)
.++.|..+|++||+..+.+++. |..|.... | .- ..-++-+. . .|-.....+..+|+.||.+
T Consensus 27 rl~~R~~~lk~dik~~k~~~en---ledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i~~les~ 103 (131)
T KOG1760|consen 27 RLNSRKDDLKADIKEAKTEIEN---LEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEIEELESE 103 (131)
T ss_pred HHHhhHHHHHHHHHHHHHHHHH---HHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778899999999999875 33332222 2 11 11112111 1 1222334456677788888
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002837 682 VARLKQKVAELHHQLNQQ 699 (875)
Q Consensus 682 v~~Le~~v~~l~~~l~~~ 699 (875)
+-..+..+.+|+..||+-
T Consensus 104 ~e~I~~~m~~LK~~LYaK 121 (131)
T KOG1760|consen 104 LESISARMDELKKVLYAK 121 (131)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777788888888888864
No 392
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=22.70 E-value=1.7e+02 Score=34.35 Aligned_cols=22 Identities=27% Similarity=0.697 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002837 628 QDVSRLQEQLQAERDLRAALEV 649 (875)
Q Consensus 628 qeV~~Lq~qL~~E~~l~~~Le~ 649 (875)
.|+++|.+.|.+|+.||.-||-
T Consensus 594 kel~kl~~dleeek~mr~~lem 615 (627)
T KOG4348|consen 594 KELEKLRKDLEEEKTMRSNLEM 615 (627)
T ss_pred HHHHHHHHHHHHHHHHHhhhHh
Confidence 4667777778888888775553
No 393
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=22.55 E-value=1.1e+02 Score=33.58 Aligned_cols=19 Identities=26% Similarity=0.583 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002837 617 QALHERRLALEQDVSRLQE 635 (875)
Q Consensus 617 ~~~~~~r~~LeqeV~~Lq~ 635 (875)
+.|.+||.+|+.+|++|.+
T Consensus 7 ~eL~qrk~~Lq~eIe~Ler 25 (283)
T PF11285_consen 7 KELEQRKQALQIEIEQLER 25 (283)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999864
No 394
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=22.47 E-value=1.2e+03 Score=26.88 Aligned_cols=39 Identities=26% Similarity=0.298 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhhhc
Q 002837 666 SKTRAELEEIALAEADVARL--------------KQKVAELHHQLNQQRQHHY 704 (875)
Q Consensus 666 ~~~~~ll~eia~~E~~v~~L--------------e~~v~~l~~~l~~~~~~~~ 704 (875)
+-.+.|..+++.+|.++..| +.++..|+.+|.++...-.
T Consensus 254 ~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~~~~ 306 (444)
T TIGR03017 254 PIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEIKKVT 306 (444)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888876665 4567777777766654433
No 395
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=22.27 E-value=5.4e+02 Score=23.37 Aligned_cols=85 Identities=19% Similarity=0.166 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC-CCCCChh----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 618 ALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSS-SRGMDSK----TRAELEEIALAEADVARLKQKVAEL 692 (875)
Q Consensus 618 ~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~-~~~lp~~----~~~ll~eia~~E~~v~~Le~~v~~l 692 (875)
.++.....+.+....|..++++=...-..|+..=.-...-..+ +.++... ...|=..++.++.+|.+|+.+...+
T Consensus 9 ~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l 88 (106)
T PF01920_consen 9 ELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYL 88 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666677777777777764333333444321110000112 2333333 3334445677777787777777777
Q ss_pred HHHHHHHHhh
Q 002837 693 HHQLNQQRQH 702 (875)
Q Consensus 693 ~~~l~~~~~~ 702 (875)
..++......
T Consensus 89 ~~~l~~~~~~ 98 (106)
T PF01920_consen 89 EKKLKELKKK 98 (106)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777665443
No 396
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=22.12 E-value=5e+02 Score=23.68 Aligned_cols=49 Identities=18% Similarity=0.287 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 620 HERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (875)
Q Consensus 620 ~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~ 699 (875)
++.|.+|.+++..||..|+ +|+..|..+..+..+|+++=.-|+.=+...
T Consensus 15 ~e~k~~Li~ei~~LQ~sL~-------------------------------~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 15 KEEKEELIQEILELQDSLE-------------------------------ALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557788888888888774 677777777888777777766666555443
No 397
>PRK11820 hypothetical protein; Provisional
Probab=22.09 E-value=6e+02 Score=28.47 Aligned_cols=97 Identities=26% Similarity=0.321 Sum_probs=53.6
Q ss_pred hhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChh
Q 002837 588 EITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSK 667 (875)
Q Consensus 588 ~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~lp~~ 667 (875)
++.+.-|..-+..-.++=+.|++-+..|-..+...-..++.......++.++ .|+.=|+..+. .++.
T Consensus 133 ~al~~AL~~l~~~R~~EG~~L~~dl~~rl~~i~~~~~~i~~~~p~~~~~~~~--rL~~rl~el~~----------~~d~- 199 (288)
T PRK11820 133 AALDEALDDLIEMREREGAALKADLLQRLDAIEALVAKIEALAPEILEEYRE--RLRERLEELLG----------ELDE- 199 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH--HHHHHHHHHHh----------hcCH-
Confidence 4445556666666667777777777777776655544433332222222211 11111111110 0222
Q ss_pred HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Q 002837 668 TRAELEEIAL------AEADVARLKQKVAELHHQLNQ 698 (875)
Q Consensus 668 ~~~ll~eia~------~E~~v~~Le~~v~~l~~~l~~ 698 (875)
..|+.|+|+ +-+|+.||..|+..++.-|..
T Consensus 200 -~Rl~qEval~adK~DI~EEi~RL~sHl~~f~~~L~~ 235 (288)
T PRK11820 200 -NRLEQEVALLAQKADIAEELDRLKSHLKEFREILKK 235 (288)
T ss_pred -HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhc
Confidence 356666665 578999999999999887754
No 398
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=22.08 E-value=6.4e+02 Score=23.38 Aligned_cols=68 Identities=22% Similarity=0.286 Sum_probs=48.3
Q ss_pred HHHhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHH-----HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 582 LAIQRLEITKNDLRHRIAKEARGNAILQASLERR-----KQ-----ALHERRLALEQDVSRLQEQLQAERDLRAALEV 649 (875)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~r-----k~-----~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~ 649 (875)
.+|.++|....+++..+.+-++.=++++..+-|- |. +.....-+|..|+..|..++.+...+-.-|..
T Consensus 3 ~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 3 TELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3688999999999999988888877776654221 11 22333566888999998888877666655544
No 399
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=21.99 E-value=1.6e+02 Score=31.42 Aligned_cols=59 Identities=31% Similarity=0.443 Sum_probs=0.0
Q ss_pred hHHHHHhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHH---------HHHHHHHHHHHHHHHHHHHHH
Q 002837 579 EEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQ---------ALHERRLALEQDVSRLQEQLQ 638 (875)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~---------~~~~~r~~LeqeV~~Lq~qL~ 638 (875)
|.|-.+--||..|+.|++.|.+ +..-+.|+-+||+-+. ..+|-=..+.+||..|+.||.
T Consensus 124 e~EklkndlEk~ks~lr~ei~~-~~a~~rLdLNLEkgr~~d~~~~~~l~~~e~s~kId~Ev~~lk~qi~ 191 (220)
T KOG3156|consen 124 ENEKLKNDLEKLKSSLRHEISK-TTAEFRLDLNLEKGRIKDESSSHDLQIKEISTKIDQEVTNLKTQIE 191 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-cchhceeecchhhccccchhhhcchhHhHHHHHHHHHHHHHHHHHH
No 400
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=21.96 E-value=9.7e+02 Score=25.42 Aligned_cols=75 Identities=25% Similarity=0.233 Sum_probs=45.4
Q ss_pred hHHHHHhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 579 EEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQAL----------HERRLALEQDVSRLQEQLQAERDLRAALE 648 (875)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~----------~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le 648 (875)
+.|.---+||+-|.-+...|+.--.-=+-||+-|..++... +.-=.+|+.+-..+|.||.+=..==..|+
T Consensus 102 ~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq 181 (192)
T PF11180_consen 102 DVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQ 181 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777778999999999999765555556787776554422 22223355555555555554333334455
Q ss_pred HhhcC
Q 002837 649 VGLSM 653 (875)
Q Consensus 649 ~al~~ 653 (875)
...+.
T Consensus 182 ~q~~~ 186 (192)
T PF11180_consen 182 RQANE 186 (192)
T ss_pred HHhcC
Confidence 55543
No 401
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=21.90 E-value=5.4e+02 Score=25.57 Aligned_cols=19 Identities=21% Similarity=0.408 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002837 674 EIALAEADVARLKQKVAEL 692 (875)
Q Consensus 674 eia~~E~~v~~Le~~v~~l 692 (875)
||..|++.|..|+.+|..|
T Consensus 110 dv~~L~~rId~L~~~v~~l 128 (132)
T PF05597_consen 110 DVEALSARIDQLTAQVERL 128 (132)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555544
No 402
>PRK11281 hypothetical protein; Provisional
Probab=21.76 E-value=1e+03 Score=31.87 Aligned_cols=26 Identities=19% Similarity=0.059 Sum_probs=18.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHH
Q 002837 664 MDSKTRAELEEIALAEADVARLKQKV 689 (875)
Q Consensus 664 lp~~~~~ll~eia~~E~~v~~Le~~v 689 (875)
-|.....|-+|.+++++.+..+++..
T Consensus 190 ~~~~~~~l~ae~~~l~~~~~~~~~~l 215 (1113)
T PRK11281 190 RPSQRVLLQAEQALLNAQNDLQRKSL 215 (1113)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556677888888888777766654
No 403
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=21.73 E-value=96 Score=31.98 Aligned_cols=38 Identities=26% Similarity=0.587 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 592 NDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQL 637 (875)
Q Consensus 592 ~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL 637 (875)
.|+..|.....--||.|..-|. -|..|..+|.||+..|
T Consensus 3 eD~EsklN~AIERnalLE~ELd--------EKE~L~~~~QRLkDE~ 40 (166)
T PF04880_consen 3 EDFESKLNQAIERNALLESELD--------EKENLREEVQRLKDEL 40 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHCH-------
T ss_pred HHHHHHHHHHHHHhHHHHHHHH--------HHHHHHHHHHHHHHHH
Confidence 3677888888888999988873 3555666666666654
No 404
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=21.60 E-value=8.5e+02 Score=31.46 Aligned_cols=120 Identities=18% Similarity=0.181 Sum_probs=58.2
Q ss_pred HhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH--HhhcCCCCCC
Q 002837 584 IQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQ---LQAERDLRAALE--VGLSMSSGQF 658 (875)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~q---L~~E~~l~~~Le--~al~~~~~~~ 658 (875)
-|-||..| +++..|....|.+|.+.--|+.|+. .|+|-.+|+++...+... |+....++.+|. +.|+.-....
T Consensus 184 Nq~l~klk-q~~~ei~e~eke~a~yh~lLe~r~~-~~~rl~~l~~elr~~~~~i~~~~~~v~l~~~lqE~k~Leqel~~~ 261 (984)
T COG4717 184 NQLLEKLK-QERNEIDEAEKEYATYHKLLESRRA-EHARLAELRSELRADRDHIRALRDAVELWPRLQEWKQLEQELTRR 261 (984)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccc
Confidence 35556666 9999999999999999888876543 333333333333332222 222333333332 1121111111
Q ss_pred C-CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCc
Q 002837 659 S-SSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQHHYGSLS 708 (875)
Q Consensus 659 ~-~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~~~~~s~~ 708 (875)
. -+..+|...- -.+...|+.....|-++..|..+|-+--.+..-+.+
T Consensus 262 ~~e~~~fP~DGv---lrlEk~~ahL~~~ea~i~~~~vrlae~~d~~~~LiP 309 (984)
T COG4717 262 REELATFPRDGV---LRLEKREAHLQKTEAEIDALLVRLAELKDLASQLIP 309 (984)
T ss_pred hhhhccCCchhH---HHHHHHHHhhhhhhhhhHHHHHHHHhhhHHHHhccc
Confidence 1 2345555421 222225555555555555555555444444433333
No 405
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=21.59 E-value=7.9e+02 Score=27.27 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 674 EIALAEADVARLKQKVAELHHQLNQQR 700 (875)
Q Consensus 674 eia~~E~~v~~Le~~v~~l~~~l~~~~ 700 (875)
....+|+.+..|++++..-+.++.++.
T Consensus 237 ~~~~~ee~~~~L~ekme~e~~~~~~e~ 263 (297)
T PF02841_consen 237 QERSYEEHIKQLKEKMEEEREQLLQEQ 263 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555544443
No 406
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=21.52 E-value=2.7e+02 Score=26.13 Aligned_cols=29 Identities=45% Similarity=0.640 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHhhc
Q 002837 624 LALEQDVSRLQEQLQ------AERDLRAALEVGLS 652 (875)
Q Consensus 624 ~~LeqeV~~Lq~qL~------~E~~l~~~Le~al~ 652 (875)
+.+..++++||+||+ .|+=-|.||..+|.
T Consensus 6 s~I~~eI~kLqe~lk~~e~keAERigRiAlKAGLg 40 (98)
T PRK13848 6 SKIREEIAKLQEQLKQAETREAERIGRIALKAGLG 40 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 356677788888875 47778888888875
No 407
>PF13166 AAA_13: AAA domain
Probab=21.43 E-value=1.5e+03 Score=28.08 Aligned_cols=66 Identities=18% Similarity=0.242 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 623 RLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAEL 692 (875)
Q Consensus 623 r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l 692 (875)
..+|+..+..|...|.. +..+|+.-+..+...+.+. .+......+...|..+++.|....+++..+
T Consensus 324 ~~~~~~~~~~l~~~l~~---l~~~L~~K~~~~~~~~~~~-~~~~~~~~l~~~i~~~n~~i~~~n~~~~~~ 389 (712)
T PF13166_consen 324 KEELKSAIEALKEELEE---LKKALEKKIKNPSSPIELE-EINEDIDELNSIIDELNELIEEHNEKIDNL 389 (712)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHhccccccccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555532 5666666554444434332 223333444444555554444444444443
No 408
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=21.29 E-value=5e+02 Score=32.45 Aligned_cols=39 Identities=26% Similarity=0.249 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhhhcCCCcccchhhhc
Q 002837 678 AEADVARLKQKVAELHHQLNQQ-RQHHYGSLSDACDRYQN 716 (875)
Q Consensus 678 ~E~~v~~Le~~v~~l~~~l~~~-~~~~~~s~~~~~~~~~~ 716 (875)
++.....|++.+..+...++++ .-.++||.+.+..+.|+
T Consensus 605 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (657)
T PTZ00186 605 LAAATDKLQKAVMECGRTEYQQAAAANSGSSSNSGEQQQQ 644 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCchHHHHH
Confidence 3334444555555555555543 34466777666654443
No 409
>PRK11020 hypothetical protein; Provisional
Probab=21.17 E-value=3.2e+02 Score=26.56 Aligned_cols=51 Identities=29% Similarity=0.341 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 002837 625 ALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQ 687 (875)
Q Consensus 625 ~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~ 687 (875)
.|.+|+.+|..+|.. +|.=|..|..+. =+....++..||+.|+.+|.+|..
T Consensus 2 ~~K~Eiq~L~drLD~---~~~Klaaa~~rg---------d~~~i~qf~~E~~~l~k~I~~lk~ 52 (118)
T PRK11020 2 VEKNEIKRLSDRLDA---IRHKLAAASLRG---------DAEKYAQFEKEKATLEAEIARLKE 52 (118)
T ss_pred cHHHHHHHHHHHHHH---HHHHHHHHHhcC---------CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888888888875 444455444321 123344555555555555555544
No 410
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=21.09 E-value=9.5e+02 Score=30.37 Aligned_cols=26 Identities=23% Similarity=0.138 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 615 RKQALHERRLALEQDVSRLQEQLQAE 640 (875)
Q Consensus 615 rk~~~~~~r~~LeqeV~~Lq~qL~~E 640 (875)
|...++.++.++|..-..||.--|.|
T Consensus 161 ~eer~~kl~~~~qe~naeL~rarqre 186 (916)
T KOG0249|consen 161 IEERTRKLEEQLEELNAELQRARQRE 186 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555444433
No 411
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=21.02 E-value=3.8e+02 Score=32.08 Aligned_cols=62 Identities=19% Similarity=0.282 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 619 LHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQ 698 (875)
Q Consensus 619 ~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~ 698 (875)
+++|-.+||++++.++++|.+-.. .....++..+++.++..+..|++++.-|+.-|.+
T Consensus 168 ~~~Rl~~L~~qi~~~~~~l~~~~~----------------------~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~ 225 (475)
T PF10359_consen 168 IQERLDELEEQIEKHEEKLGELEL----------------------NPDDPELKSDIEELERHISSLKERIEFLENMLED 225 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccc----------------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677777777776654222 2223445555556666666666665555555544
Q ss_pred HHhh
Q 002837 699 QRQH 702 (875)
Q Consensus 699 ~~~~ 702 (875)
-...
T Consensus 226 l~~~ 229 (475)
T PF10359_consen 226 LEDS 229 (475)
T ss_pred Hhhh
Confidence 4433
No 412
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=21.00 E-value=1e+03 Score=31.36 Aligned_cols=23 Identities=13% Similarity=0.264 Sum_probs=15.4
Q ss_pred hhhhhccCCCCCCChhhHHHHHHHHhc
Q 002837 238 VKHVLRELPSSPVPASCCTALLEAYKI 264 (875)
Q Consensus 238 LK~fLReLPePLLp~~ly~~~i~~~~~ 264 (875)
=+.||.+.. |.+.|..|+.+...
T Consensus 187 aR~FL~~~~----p~dkYklfmkaT~L 209 (1074)
T KOG0250|consen 187 ARSFLANSN----PKDKYKLFMKATQL 209 (1074)
T ss_pred HHHHHhcCC----hHHHHHHHHHHhHH
Confidence 367777764 56778877776554
No 413
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=20.92 E-value=1.1e+02 Score=36.50 Aligned_cols=29 Identities=17% Similarity=0.361 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 670 AELEEIALAEADVARLKQKVAELHHQLNQ 698 (875)
Q Consensus 670 ~ll~eia~~E~~v~~Le~~v~~l~~~l~~ 698 (875)
+++.+|+.|+.+|..||+|+.+|..++..
T Consensus 28 ~~~qkie~L~kql~~Lk~q~~~l~~~v~k 56 (489)
T PF11853_consen 28 DLLQKIEALKKQLEELKAQQDDLNDRVDK 56 (489)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccccch
Confidence 46668888888888888888877776643
No 414
>smart00338 BRLZ basic region leucin zipper.
Probab=20.85 E-value=2.9e+02 Score=23.49 Aligned_cols=15 Identities=13% Similarity=0.313 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 002837 622 RRLALEQDVSRLQEQ 636 (875)
Q Consensus 622 ~r~~LeqeV~~Lq~q 636 (875)
+|.-=.+-+..|+.+
T Consensus 20 ~R~rKk~~~~~Le~~ 34 (65)
T smart00338 20 SRERKKAEIEELERK 34 (65)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333444444433
No 415
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=20.83 E-value=7.1e+02 Score=23.46 Aligned_cols=39 Identities=18% Similarity=0.216 Sum_probs=27.4
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002837 663 GMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (875)
Q Consensus 663 ~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~ 701 (875)
..+.-...|=..|..+|..|..|+++...|+.++...+.
T Consensus 64 ~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~ 102 (110)
T TIGR02338 64 DKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQE 102 (110)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455566778888888888888888888776544
No 416
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=20.73 E-value=1.4e+02 Score=25.61 Aligned_cols=26 Identities=38% Similarity=0.461 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 668 TRAELEEIALAEADVARLKQKVAELH 693 (875)
Q Consensus 668 ~~~ll~eia~~E~~v~~Le~~v~~l~ 693 (875)
+-+|=+=||+||+||.++|..+..=.
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K~ 48 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKKS 48 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555569999999999998876533
No 417
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.71 E-value=5.4e+02 Score=30.56 Aligned_cols=88 Identities=18% Similarity=0.288 Sum_probs=54.2
Q ss_pred hhhhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHH
Q 002837 607 ILQASLERRK--QALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVAR 684 (875)
Q Consensus 607 ~~q~~~~~rk--~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~ 684 (875)
+++..+.+|+ ...-+.=.+|+.+..+|+.+++.=+..|..|-..+++... .... .+.+|++|+..+=.++..
T Consensus 13 ~v~~~l~~r~~~~~~~~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~-----~~~~-~~~~l~~e~~~l~~~l~~ 86 (429)
T COG0172 13 AVREKLKKRGGDALDVDKLLELDEERRKLLRELEELQAERNELSKEIGRALK-----RGED-DAEELIAEVKELKEKLKE 86 (429)
T ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----ccch-hHHHHHHHHHHHHHHHHh
Confidence 3555555553 2333444555555555555555555556666655542211 1122 567899999888888888
Q ss_pred HHHHHHHHHHHHHHHH
Q 002837 685 LKQKVAELHHQLNQQR 700 (875)
Q Consensus 685 Le~~v~~l~~~l~~~~ 700 (875)
||.++.++..+|..-.
T Consensus 87 ~e~~~~~~~~~l~~~l 102 (429)
T COG0172 87 LEAALDELEAELDTLL 102 (429)
T ss_pred ccHHHHHHHHHHHHHH
Confidence 8888888888876654
No 418
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=20.67 E-value=8.6e+02 Score=24.31 Aligned_cols=68 Identities=22% Similarity=0.349 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 617 QALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQL 696 (875)
Q Consensus 617 ~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l 696 (875)
..|..+-..||.+|.+|+.+|..=...-..-+.... .+-.|=.-|.+||+++...+..+...-..|
T Consensus 38 ~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~--------------~~E~l~rriq~LEeele~ae~~L~e~~ekl 103 (143)
T PF12718_consen 38 TSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKS--------------NAEQLNRRIQLLEEELEEAEKKLKETTEKL 103 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--------------hHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666666666543322222222111 112445557777777777777776666655
Q ss_pred HH
Q 002837 697 NQ 698 (875)
Q Consensus 697 ~~ 698 (875)
.+
T Consensus 104 ~e 105 (143)
T PF12718_consen 104 RE 105 (143)
T ss_pred HH
Confidence 54
No 419
>PF14282 FlxA: FlxA-like protein
Probab=20.40 E-value=5.7e+02 Score=24.21 Aligned_cols=59 Identities=20% Similarity=0.313 Sum_probs=33.8
Q ss_pred HHHHhHhhhhhHHHHHHHHHHhhhhhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 581 ELAIQRLEITKNDLRHRIAKEARGNAILQAS-LERRKQALHERRLALEQDVSRLQEQLQAE 640 (875)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~-~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E 640 (875)
.-.|++|+.-...|+.+|. +++.+.-+=+. -..+.+.+...-..|+..+.+|+.+..++
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~-~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~ 77 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQ-ELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQ 77 (106)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999996 55554332110 02223334444444555555554444443
No 420
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=20.38 E-value=7e+02 Score=25.75 Aligned_cols=76 Identities=20% Similarity=0.305 Sum_probs=0.0
Q ss_pred HHHhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 002837 582 LAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSS 661 (875)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~ 661 (875)
..|-|+=..-.+|-..-++-........+..+..++...+.-..+++|+++|+++|.+
T Consensus 115 l~I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~---------------------- 172 (192)
T PF05529_consen 115 LVIRRVHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEK---------------------- 172 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHH----------------------
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 662 RGMDSKTRAELEEIALAEADVARLKQKVAELHHQ 695 (875)
Q Consensus 662 ~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~ 695 (875)
.|.++..|++|...|...
T Consensus 173 ----------------~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 173 ----------------KEKEIEALKKQSEGLQKE 190 (192)
T ss_pred ----------------HHHHHHHHHHHHHHHHhh
No 421
>PTZ00464 SNF-7-like protein; Provisional
Probab=20.31 E-value=1.1e+03 Score=25.31 Aligned_cols=98 Identities=10% Similarity=0.167 Sum_probs=0.0
Q ss_pred HHHHhHhhhhhHHHHHHH--HHHhhhhhhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 002837 581 ELAIQRLEITKNDLRHRI--AKEARGNAILQASLERRKQALHERRLAL-EQDVSRLQEQLQAERDLRAALEVGLSMSSGQ 657 (875)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~--~~~~~~n~~~q~~~~~rk~~~~~~r~~L-eqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~ 657 (875)
|-.+.+|.....-|...+ -.-++-|..+=..+..-.++|..--..+ =.+|+.|+..+++..+...-+-.+|. +.
T Consensus 74 E~ql~~l~~q~~nleq~~~~ie~a~~~~~vv~amk~g~kaLK~~~k~i~id~Vd~l~Dei~E~~e~~~EI~e~Ls---~~ 150 (211)
T PTZ00464 74 QNQQDMMMQQQFNMDQLQFTTESVKDTKVQVDAMKQAAKTLKKQFKKLNVDKVEDLQDELADLYEDTQEIQEIMG---RA 150 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHh---CC
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHH
Q 002837 658 FSSSRGMDSKTRAELEEIALAEADVA 683 (875)
Q Consensus 658 ~~~~~~lp~~~~~ll~eia~~E~~v~ 683 (875)
+..+.-++.. ||.+|++.||.++.
T Consensus 151 ~~~~~~~DEd--ELe~ELe~Le~e~~ 174 (211)
T PTZ00464 151 YDVPDDIDED--EMLGELDALDFDME 174 (211)
T ss_pred CCCCCCCCHH--HHHHHHHHHHHHHh
No 422
>PF04714 BCL_N: BCL7, N-terminal conserver region; InterPro: IPR006804 The members of this group of sequences contain a conserved N-terminal domain which is found in the BCL7 family. The function of BCL7 proteins is unknown, though they may be involved in early development. Notably, BCL7B is commonly hemizygously deleted in patients with Williams syndrome [].
Probab=20.26 E-value=55 Score=27.22 Aligned_cols=21 Identities=33% Similarity=0.762 Sum_probs=18.7
Q ss_pred CCCcEEEEEEEeCCeeeEecC
Q 002837 34 WKSWKKRWFILTRTSLVFFKN 54 (875)
Q Consensus 34 ~ksWKKRWFVL~~~~L~YYKd 54 (875)
...|.|.|.++.+++|..||=
T Consensus 27 Vr~wEKKWVtv~dtslriyKW 47 (52)
T PF04714_consen 27 VRKWEKKWVTVGDTSLRIYKW 47 (52)
T ss_pred HHHHhhceEEeccceEEEEEE
Confidence 467999999999999999983
Done!