Query 002837
Match_columns 875
No_of_seqs 489 out of 2461
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 03:35:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002837.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002837hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3byi_A RHO GTPase activating p 100.0 8.4E-41 2.9E-45 346.6 14.4 205 152-375 6-214 (214)
2 3msx_B RHO GTPase-activating p 100.0 1.3E-40 4.6E-45 341.6 15.2 196 159-372 6-201 (201)
3 2ee4_A RHO GTPase activating p 100.0 2.4E-40 8.1E-45 342.0 14.9 197 161-376 8-206 (209)
4 3iug_A RHO/CDC42/RAC GTPase-ac 100.0 5.4E-40 1.9E-44 344.0 15.5 210 154-377 10-224 (229)
5 1tx4_A P50-rhogap; complex (GT 100.0 1.5E-39 5.1E-44 333.4 14.9 193 159-372 2-198 (198)
6 3fk2_A Glucocorticoid receptor 100.0 1.6E-39 5.4E-44 344.2 14.9 197 159-374 47-245 (246)
7 2osa_A N-chimaerin; RHO-GAP, G 100.0 3.8E-39 1.3E-43 331.4 16.8 192 163-372 6-202 (202)
8 1f7c_A Rhogap protein; GTPase 100.0 2.3E-39 7.7E-44 339.9 14.1 194 164-376 17-220 (231)
9 1ow3_A RHO-GTPase-activating p 100.0 1.3E-38 4.3E-43 336.5 14.9 198 158-376 37-238 (242)
10 1pbw_A Rhogap domain, phosphat 100.0 3.1E-38 1.1E-42 328.0 11.4 191 163-376 5-202 (216)
11 3kuq_A RHO GTPase-activating p 100.0 1.7E-37 5.7E-42 325.1 16.0 209 161-371 16-228 (228)
12 2ovj_A Mgcracgap, RAC GTPase-a 100.0 1.2E-36 4.2E-41 312.7 16.0 191 168-375 4-197 (201)
13 3eap_A RHO GTPase-activating p 100.0 3E-36 1E-40 323.4 13.4 200 159-376 58-261 (271)
14 3cxl_A N-chimerin; SH2, RHO-GA 100.0 6.2E-35 2.1E-39 334.8 15.0 192 163-372 267-463 (463)
15 2xs6_A Phosphatidylinositol 3- 100.0 4.3E-36 1.5E-40 311.8 2.3 192 162-376 19-213 (214)
16 3qis_A Inositol polyphosphate 100.0 3.8E-31 1.3E-35 295.1 15.4 141 179-327 198-338 (366)
17 1x1f_A Signal-transducing adap 99.7 2.5E-16 8.5E-21 154.7 14.1 95 17-125 16-113 (149)
18 1wi1_A Calcium-dependent activ 99.7 1.7E-16 5.8E-21 151.1 12.1 102 17-127 6-112 (126)
19 1v88_A Oxysterol binding prote 99.7 2.4E-16 8.3E-21 151.2 12.5 103 15-128 4-127 (130)
20 1dyn_A Dynamin; signal transdu 99.6 6.5E-16 2.2E-20 146.0 12.5 100 18-123 11-115 (125)
21 2da0_A 130-kDa phosphatidylino 99.6 1.1E-15 3.7E-20 142.0 12.2 100 13-128 4-104 (114)
22 2rsg_A Collagen type IV alpha- 99.6 5.3E-16 1.8E-20 138.8 8.4 92 19-123 1-92 (94)
23 1wgq_A FYVE, rhogef and PH dom 99.6 1.5E-15 5.3E-20 139.2 11.6 101 16-127 5-105 (109)
24 1v89_A Hypothetical protein KI 99.6 2.2E-15 7.4E-20 139.0 12.7 107 16-129 5-116 (118)
25 1pls_A Pleckstrin homology dom 99.6 2.2E-15 7.4E-20 138.9 12.6 98 17-127 3-103 (113)
26 1v5u_A SBF1, SET binding facto 99.6 1.2E-15 4.2E-20 140.8 10.5 101 15-129 4-115 (117)
27 2d9v_A Pleckstrin homology dom 99.6 4.5E-15 1.5E-19 141.4 14.2 107 15-125 4-114 (130)
28 1v5p_A Pleckstrin homology dom 99.6 2.6E-15 8.8E-20 143.3 12.4 103 14-126 10-121 (126)
29 2cod_A Centaurin-delta 1; ARF 99.6 2.9E-15 9.9E-20 138.7 12.3 97 14-126 3-100 (115)
30 1x1g_A Pleckstrin 2; PH domain 99.6 4.5E-15 1.5E-19 139.8 13.7 109 4-125 3-124 (129)
31 2dn6_A KIAA0640 protein; PH do 99.6 4E-15 1.4E-19 136.9 12.7 98 15-126 4-104 (115)
32 2dhk_A TBC1 domain family memb 99.6 2.6E-15 8.8E-20 140.7 11.4 96 16-125 5-104 (119)
33 1x05_A Pleckstrin; PH domain, 99.6 7E-15 2.4E-19 138.6 14.2 105 14-126 13-121 (129)
34 1fgy_A GRP1; PH domain, signal 99.6 4.4E-15 1.5E-19 138.9 12.7 101 17-128 3-123 (127)
35 1fao_A Dual adaptor of phospho 99.6 3.4E-15 1.2E-19 140.3 11.9 99 14-126 13-113 (126)
36 1eaz_A Tandem PH domain contai 99.6 2.9E-15 1E-19 139.9 11.1 100 13-126 8-112 (125)
37 2i5f_A Pleckstrin; PH domain, 99.6 6.6E-15 2.2E-19 134.3 13.1 102 15-124 3-108 (109)
38 2w2x_D 1-phosphatidylinositol- 99.6 3.9E-16 1.4E-20 147.9 4.9 108 16-127 9-121 (124)
39 2lul_A Tyrosine-protein kinase 99.6 1.5E-14 5.1E-19 143.8 16.4 119 12-142 8-137 (164)
40 1wjm_A Beta-spectrin III; PH d 99.6 2.2E-15 7.6E-20 141.4 9.9 111 14-129 3-121 (123)
41 3cxb_B Pleckstrin homology dom 99.6 5.9E-15 2E-19 137.4 12.2 95 21-126 2-102 (112)
42 2p0d_A RHO GTPase-activating p 99.6 3.3E-15 1.1E-19 142.6 10.7 109 14-127 7-126 (129)
43 2dkp_A Pleckstrin homology dom 99.6 9.9E-15 3.4E-19 137.1 13.7 103 14-125 16-119 (128)
44 2yry_A Pleckstrin homology dom 99.6 1.9E-14 6.6E-19 133.9 15.3 99 14-125 17-120 (122)
45 1unq_A RAC-alpha serine/threon 99.6 3.6E-15 1.2E-19 140.1 9.4 106 16-127 5-112 (125)
46 1upq_A PEPP1; PH domain, phosp 99.6 1.5E-14 5.1E-19 134.9 12.9 104 14-125 6-109 (123)
47 4a6h_A Phosphatidylinositol 4, 99.6 6.5E-15 2.2E-19 139.5 10.4 101 19-125 6-118 (120)
48 1u5d_A SKAP55, SRC kinase-asso 99.6 1.2E-14 4.1E-19 131.7 11.7 103 18-126 2-106 (108)
49 1wg7_A Dedicator of cytokinesi 99.6 9.2E-15 3.2E-19 141.7 11.1 102 15-127 14-126 (150)
50 1btk_A Bruton'S tyrosine kinas 99.6 6.9E-15 2.4E-19 147.0 10.4 104 18-129 2-136 (169)
51 3pp2_A RHO GTPase-activating p 99.6 1.7E-14 5.7E-19 136.8 12.4 106 16-125 5-123 (124)
52 2cof_A Protein KIAA1914; PH do 99.6 7.4E-15 2.5E-19 134.7 9.4 97 16-125 5-101 (107)
53 2d9x_A Oxysterol binding prote 99.6 6.3E-15 2.1E-19 137.9 8.8 99 16-126 5-105 (120)
54 2j59_M RHO-GTPase activating p 99.6 1.4E-14 4.8E-19 143.3 11.8 102 18-126 2-112 (168)
55 1u5f_A SRC-associated adaptor 99.6 2.7E-14 9.2E-19 138.4 13.3 105 16-126 14-120 (148)
56 2y7b_A Actin-binding protein a 99.5 5.2E-15 1.8E-19 140.2 8.1 104 16-125 2-128 (134)
57 2d9y_A Pleckstrin homology dom 99.5 2.3E-14 8E-19 132.2 12.2 102 15-125 7-109 (117)
58 3aj4_A Pleckstrin homology dom 99.5 1.2E-14 4.3E-19 133.6 10.2 103 17-125 3-111 (112)
59 2coc_A FYVE, rhogef and PH dom 99.5 2.3E-14 7.8E-19 134.2 11.6 99 17-126 6-107 (112)
60 1dro_A Beta-spectrin; cytoskel 99.5 1.3E-14 4.5E-19 136.4 8.8 110 14-126 3-120 (122)
61 2rlo_A Centaurin-gamma 1; spli 99.5 4.9E-14 1.7E-18 133.6 12.4 104 18-125 3-124 (128)
62 3rcp_A Pleckstrin homology dom 99.5 2.8E-14 9.6E-19 129.3 10.0 94 21-126 1-94 (103)
63 1u5e_A SRC-associated adaptor 99.5 6.3E-14 2.1E-18 145.0 12.0 99 17-126 104-209 (211)
64 1btn_A Beta-spectrin; signal t 99.5 6.8E-14 2.3E-18 126.9 9.9 98 21-123 1-106 (106)
65 3a8p_A T-lymphoma invasion and 99.5 1.1E-13 3.7E-18 147.8 11.5 108 16-128 8-127 (263)
66 4h8s_A DCC-interacting protein 99.5 1.1E-13 3.8E-18 156.0 10.7 104 14-127 296-400 (407)
67 3tfm_A Myosin X; split PH doma 99.5 2E-13 6.7E-18 142.7 11.6 97 16-126 55-156 (228)
68 2dtc_A RAL guanine nucleotide 99.4 2.2E-12 7.5E-17 123.2 14.4 102 20-126 2-113 (126)
69 2q13_A DCC-interacting protein 99.4 4.4E-13 1.5E-17 150.0 10.9 99 17-126 276-376 (385)
70 2r09_A Cytohesin-3; autoinhibi 99.4 7.3E-13 2.5E-17 146.7 11.8 101 18-129 212-332 (347)
71 3lju_X ARF-GAP with dual PH do 99.4 1.1E-12 3.7E-17 147.3 12.8 98 15-126 265-373 (386)
72 1qqg_A IRS-1, insulin receptor 99.4 4.3E-13 1.5E-17 143.3 8.4 103 12-127 3-114 (264)
73 3tca_A Amyloid beta A4 precurs 99.3 2.5E-12 8.5E-17 137.4 10.9 104 19-125 168-276 (291)
74 2rov_A RHO-associated protein 99.3 7E-12 2.4E-16 118.2 7.7 104 21-125 3-115 (117)
75 2fjl_A 1-phosphatidylinositol- 99.3 2.4E-11 8.4E-16 118.6 11.7 104 20-125 2-148 (150)
76 3lju_X ARF-GAP with dual PH do 99.2 7.8E-12 2.7E-16 140.4 8.4 95 19-124 146-245 (386)
77 3a8n_A TIAM-1, T-lymphoma inva 99.2 3.4E-11 1.2E-15 129.3 9.2 106 15-125 7-124 (279)
78 2ys3_A UNC-112-related protein 99.1 1.3E-10 4.4E-15 111.7 10.3 101 20-125 10-112 (137)
79 4ejn_A RAC-alpha serine/threon 99.1 7.6E-11 2.6E-15 133.2 10.0 104 17-126 4-109 (446)
80 2d9w_A Docking protein 2; PH d 99.1 1.2E-09 4E-14 103.3 12.4 102 15-125 8-121 (127)
81 3hk0_A Growth factor receptor- 99.0 1.2E-09 4.2E-14 115.9 12.0 106 17-125 130-240 (256)
82 4bbk_A Kindlin-1, fermitin fam 98.9 2.3E-09 8E-14 104.4 9.8 101 20-125 27-129 (165)
83 4f7h_A Fermitin family homolog 98.9 3.1E-09 1E-13 104.6 10.4 101 20-125 48-150 (173)
84 4gmv_A RAS-associated and plec 98.9 2.2E-09 7.4E-14 115.4 9.7 105 18-125 157-266 (281)
85 1w1g_A HPDK1, 3-phosphoinositi 98.8 1.3E-08 4.4E-13 99.4 9.6 94 14-126 47-140 (151)
86 2coa_A Protein kinase C, D2 ty 98.5 2.9E-07 1E-11 86.9 9.5 98 14-125 3-119 (125)
87 2d9z_A Protein kinase C, NU ty 98.5 1.2E-06 4.1E-11 83.0 11.9 98 14-125 3-123 (129)
88 1v5m_A SH2 and PH domain-conta 97.9 0.00016 5.5E-09 68.7 13.7 106 14-126 13-131 (136)
89 3tfm_A Myosin X; split PH doma 97.4 0.00014 4.8E-09 75.6 5.7 40 17-58 19-58 (228)
90 3ml4_A Protein DOK-7; tyrosine 97.3 0.00049 1.7E-08 70.9 9.0 98 17-125 7-113 (224)
91 2lg1_A A-kinase anchor protein 97.2 0.0015 5.2E-08 65.9 10.7 103 17-127 69-174 (185)
92 1v61_A RAC/CDC42 guanine nucle 97.0 0.0047 1.6E-07 59.2 11.8 86 37-128 44-129 (132)
93 3p6a_A RHO guanine nucleotide 96.8 0.0067 2.3E-07 66.9 12.4 104 16-127 256-373 (377)
94 3odw_A RHO guanine nucleotide 96.8 0.0051 1.7E-07 71.7 11.4 107 16-130 409-529 (536)
95 1zc3_B Exocyst complex protein 96.6 0.018 6.1E-07 53.6 11.6 104 15-125 4-107 (113)
96 3t06_A PDZ-rhogef, RHO guanine 96.4 0.012 4.2E-07 65.8 11.6 104 16-127 292-410 (418)
97 3mpx_A FYVE, rhogef and PH dom 96.3 0.014 4.8E-07 65.6 11.0 100 14-126 239-338 (434)
98 1xcg_A PDZ-rhogef, RHO guanine 96.3 0.027 9.1E-07 61.9 12.9 103 16-126 250-367 (368)
99 1txd_A RHO guanine nucleotide 96.0 0.02 6.8E-07 63.4 9.9 104 16-127 254-371 (385)
100 1nty_A Triple functional domai 95.7 0.068 2.3E-06 57.4 12.5 103 17-126 201-309 (311)
101 3zvr_A Dynamin-1; hydrolase, D 95.6 0.056 1.9E-06 65.5 12.5 99 18-122 539-642 (772)
102 1dbh_A Protein (human SOS 1); 95.4 0.094 3.2E-06 57.2 12.6 102 16-126 244-350 (354)
103 2rgn_B RHOA/RAC/CDC42 exchange 95.3 0.081 2.8E-06 58.1 11.6 105 17-126 205-319 (354)
104 1mai_A Phospholipase C delta-1 95.3 0.09 3.1E-06 49.8 10.4 39 87-126 84-122 (131)
105 2dfk_A Collybistin II; DH doma 95.2 0.14 4.9E-06 57.1 13.4 109 15-126 253-364 (402)
106 2pz1_A RHO guanine nucleotide 95.2 0.13 4.3E-06 58.5 12.9 108 16-126 331-441 (466)
107 1kz7_A Guanine nucleotide exch 95.1 0.17 5.8E-06 55.4 13.2 104 17-126 208-326 (353)
108 3qwm_A Iqsec1, IQ motif and SE 94.7 0.18 6E-06 48.8 10.5 103 19-125 13-122 (140)
109 2vrw_B P95VAV, VAV1, proto-onc 94.1 0.28 9.6E-06 54.6 12.1 104 18-127 233-337 (406)
110 2dfs_A Myosin-5A; myosin-V, in 93.9 0.22 7.6E-06 62.6 11.8 103 584-699 923-1049(1080)
111 3ol1_A Vimentin; structural ge 93.6 0.49 1.7E-05 44.3 10.8 37 587-623 18-54 (119)
112 2z0q_A XPLN, RHO guanine nucle 93.5 0.27 9.2E-06 53.4 10.5 102 16-124 229-345 (346)
113 3o0z_A RHO-associated protein 93.5 2 6.7E-05 42.6 15.4 86 618-703 59-159 (168)
114 3jzy_A Intersectin 2; C2 domai 93.4 0.014 4.8E-07 66.7 0.0 99 17-127 251-364 (510)
115 3ky9_A Proto-oncogene VAV; cal 93.1 0.31 1E-05 57.2 10.6 104 18-127 405-509 (587)
116 2fxo_A Myosin heavy chain, car 92.3 1.8 6.2E-05 41.0 13.0 33 613-645 68-100 (129)
117 1foe_A T-lymphoma invasion and 91.5 1.6 5.6E-05 47.8 13.5 107 17-125 236-366 (377)
118 3ksy_A SOS-1, SON of sevenless 91.3 0.51 1.8E-05 59.2 10.2 100 16-126 441-547 (1049)
119 3v5w_A G-protein coupled recep 90.4 0.74 2.5E-05 55.2 9.9 97 14-125 554-652 (689)
120 2ke4_A CDC42-interacting prote 90.2 0.96 3.3E-05 41.1 8.2 75 620-694 14-90 (98)
121 3swk_A Vimentin; cytoskeleton, 89.7 2.9 9.8E-05 37.0 10.7 79 592-698 3-81 (86)
122 3oja_B Anopheles plasmodium-re 88.8 3 0.0001 48.4 13.3 34 669-702 533-566 (597)
123 3mq9_A Bone marrow stromal ant 82.7 6.7 0.00023 44.2 11.8 77 618-700 394-470 (471)
124 2fxo_A Myosin heavy chain, car 79.4 35 0.0012 32.0 13.7 36 613-648 33-68 (129)
125 2eqb_B RAB guanine nucleotide 77.8 17 0.00057 32.9 10.1 31 619-649 17-47 (97)
126 2v71_A Nuclear distribution pr 77.7 4.4 0.00015 40.9 7.1 18 666-683 137-154 (189)
127 3na7_A HP0958; flagellar bioge 76.7 45 0.0015 34.7 15.0 71 581-651 59-141 (256)
128 3na7_A HP0958; flagellar bioge 76.4 47 0.0016 34.6 15.0 35 665-699 89-123 (256)
129 3he4_A Synzip6; heterodimeric 76.1 1.5 5E-05 34.1 2.4 20 593-612 7-26 (56)
130 3oja_B Anopheles plasmodium-re 72.0 22 0.00076 41.0 12.3 29 587-615 461-489 (597)
131 1z87_A Alpha-1-syntrophin; pro 67.7 8 0.00027 40.9 6.6 56 66-125 206-262 (263)
132 1m1j_C Fibrinogen gamma chain; 67.2 41 0.0014 37.8 12.6 85 608-694 25-112 (409)
133 1gmj_A ATPase inhibitor; coile 65.8 44 0.0015 29.4 9.7 55 613-694 23-79 (84)
134 1i84_S Smooth muscle myosin he 64.5 9.4 0.00032 48.5 7.6 35 617-651 916-950 (1184)
135 1kd8_B GABH BLL, GCN4 acid bas 62.7 12 0.0004 27.6 4.6 28 612-639 6-33 (36)
136 3mq9_A Bone marrow stromal ant 62.6 21 0.0007 40.2 9.2 55 587-641 395-463 (471)
137 3ol1_A Vimentin; structural ge 62.2 65 0.0022 29.8 11.0 29 621-649 62-90 (119)
138 3c3f_A Alpha/beta peptide with 61.1 10 0.00035 27.6 4.0 27 612-638 6-32 (34)
139 2dfs_A Myosin-5A; myosin-V, in 60.4 80 0.0027 39.8 14.7 17 287-303 409-425 (1080)
140 1kd8_A GABH AIV, GCN4 acid bas 60.3 14 0.00047 27.3 4.6 27 612-638 6-32 (36)
141 3c3g_A Alpha/beta peptide with 59.8 11 0.00039 27.2 4.0 27 612-638 5-31 (33)
142 3m48_A General control protein 59.1 11 0.00038 27.3 3.8 28 611-638 4-31 (33)
143 3o0z_A RHO-associated protein 59.1 29 0.00099 34.3 8.2 26 624-649 44-69 (168)
144 2w6b_A RHO guanine nucleotide 59.0 19 0.00064 29.1 5.6 35 618-652 14-48 (56)
145 2adz_A Alpha-1-syntrophin; pro 58.7 13 0.00046 37.0 5.9 39 86-125 139-177 (178)
146 2ocy_A RAB guanine nucleotide 58.6 86 0.0029 30.5 11.4 33 619-651 49-81 (154)
147 1m1j_B Fibrinogen beta chain; 58.6 82 0.0028 35.9 13.0 31 607-637 125-155 (464)
148 2oxj_A Hybrid alpha/beta pepti 57.9 16 0.00056 26.6 4.6 28 611-638 5-32 (34)
149 2p22_A Suppressor protein STP2 57.7 1.5E+02 0.0052 29.3 14.2 110 580-689 10-138 (174)
150 1c1g_A Tropomyosin; contractIl 57.6 1.5E+02 0.0051 29.2 15.4 11 626-636 95-105 (284)
151 1uo4_A General control protein 55.2 15 0.00053 26.8 4.0 28 611-638 5-32 (34)
152 2hy6_A General control protein 54.7 20 0.00069 26.1 4.6 26 612-637 6-31 (34)
153 3a7p_A Autophagy protein 16; c 54.5 1.2E+02 0.0041 29.4 11.5 113 566-701 18-138 (152)
154 4dzn_A Coiled-coil peptide CC- 54.5 23 0.00078 24.9 4.7 25 674-698 3-27 (33)
155 3thf_A Protein shroom; coiled- 54.5 1E+02 0.0035 31.0 11.3 113 583-698 20-187 (190)
156 1ses_A Seryl-tRNA synthetase; 54.0 58 0.002 36.6 10.9 84 608-700 14-98 (421)
157 3ra3_B P2F; coiled coil domain 53.7 9.5 0.00032 25.9 2.6 21 667-687 8-28 (28)
158 3v6i_B V-type ATP synthase, su 53.6 53 0.0018 29.8 8.2 58 580-637 15-73 (105)
159 3he5_A Synzip1; heterodimeric 53.2 42 0.0014 25.5 6.3 42 624-691 6-49 (49)
160 1kd8_A GABH AIV, GCN4 acid bas 53.0 20 0.00067 26.5 4.3 27 665-691 7-33 (36)
161 1fho_A UNC-89; pleckstrin homo 52.6 25 0.00086 32.6 6.4 99 18-124 9-111 (119)
162 2wq1_A General control protein 52.5 23 0.00079 25.7 4.6 26 612-637 5-30 (33)
163 1x79_B RAB GTPase binding effe 50.9 1.4E+02 0.0049 27.5 11.0 68 620-700 5-72 (112)
164 3tnu_A Keratin, type I cytoske 50.4 85 0.0029 29.4 9.8 61 626-699 43-103 (131)
165 1cxz_B Protein (PKN); protein- 49.8 79 0.0027 27.9 8.6 55 626-698 23-81 (86)
166 2e7s_A RAB guanine nucleotide 49.2 34 0.0012 32.7 6.7 48 624-702 42-89 (135)
167 1g6u_A Domain swapped dimer; d 49.2 22 0.00077 26.8 4.3 25 673-697 20-44 (48)
168 1i84_S Smooth muscle myosin he 48.9 55 0.0019 41.5 10.7 25 618-642 882-906 (1184)
169 1f5n_A Interferon-induced guan 48.3 68 0.0023 37.7 10.6 51 599-649 467-522 (592)
170 1wt6_A Myotonin-protein kinase 47.8 55 0.0019 28.5 7.2 50 590-639 11-70 (81)
171 3k29_A Putative uncharacterize 47.3 2.2E+02 0.0075 28.1 12.1 73 616-701 22-106 (169)
172 2bni_A General control protein 46.9 22 0.00076 25.9 3.8 27 612-638 6-32 (34)
173 1cxz_B Protein (PKN); protein- 46.6 44 0.0015 29.5 6.5 26 578-603 14-39 (86)
174 1kd8_B GABH BLL, GCN4 acid bas 46.2 34 0.0012 25.3 4.7 27 665-691 7-33 (36)
175 3ghg_A Fibrinogen alpha chain; 45.1 31 0.001 39.7 6.6 44 623-683 112-155 (562)
176 3ghg_A Fibrinogen alpha chain; 44.8 76 0.0026 36.5 9.7 66 663-728 121-186 (562)
177 2dq3_A Seryl-tRNA synthetase; 44.6 84 0.0029 35.3 10.3 73 621-695 30-104 (425)
178 2wq1_A General control protein 44.3 29 0.00098 25.2 4.0 24 665-688 6-29 (33)
179 3lay_A Zinc resistance-associa 43.9 1.4E+02 0.0047 29.6 10.5 32 665-699 112-143 (175)
180 3m48_A General control protein 42.3 27 0.00094 25.4 3.6 24 664-687 5-28 (33)
181 3ghg_C Fibrinogen gamma chain; 42.0 1.7E+02 0.0057 32.9 11.9 89 608-696 25-114 (411)
182 2dq0_A Seryl-tRNA synthetase; 41.8 1E+02 0.0034 35.0 10.4 34 667-700 70-103 (455)
183 3qne_A Seryl-tRNA synthetase, 41.0 54 0.0019 37.6 8.0 34 668-701 73-106 (485)
184 3tnu_B Keratin, type II cytosk 40.9 1.4E+02 0.0049 27.7 9.7 61 626-699 41-101 (129)
185 2l5g_B Putative uncharacterize 40.2 50 0.0017 25.3 5.0 30 670-699 6-35 (42)
186 3bas_A Myosin heavy chain, str 38.8 72 0.0025 28.0 6.8 26 613-638 62-87 (89)
187 3ibp_A Chromosome partition pr 38.6 1.3E+02 0.0046 32.2 9.9 65 609-673 12-76 (302)
188 3s4r_A Vimentin; alpha-helix, 38.6 1.6E+02 0.0055 26.0 9.1 26 670-695 67-92 (93)
189 1uo4_A General control protein 38.3 34 0.0012 25.0 3.6 24 664-687 6-29 (34)
190 4etp_A Kinesin-like protein KA 37.2 31 0.0011 38.6 5.2 42 612-653 15-56 (403)
191 3c3f_A Alpha/beta peptide with 37.2 37 0.0013 24.8 3.6 24 665-688 7-30 (34)
192 1quu_A Human skeletal muscle a 37.1 3.4E+02 0.011 27.3 14.6 121 578-698 48-197 (250)
193 3edu_A Beta-I spectrin, spectr 36.9 2.2E+02 0.0074 28.0 11.1 117 580-699 36-173 (218)
194 1fmh_A General control protein 36.3 69 0.0024 22.5 4.8 25 669-693 4-28 (33)
195 1uii_A Geminin; human, DNA rep 35.4 88 0.003 27.4 6.5 28 669-696 49-76 (83)
196 2pnv_A Small conductance calci 35.1 63 0.0021 24.9 5.0 31 608-638 10-40 (43)
197 1jnm_A Proto-oncogene C-JUN; B 35.0 53 0.0018 26.8 5.0 45 616-691 17-61 (62)
198 1urf_A Protein kinase C-like 1 34.7 99 0.0034 27.0 6.7 67 627-704 7-74 (81)
199 3lbx_B Beta-I spectrin, spectr 34.6 2.2E+02 0.0076 27.3 10.5 113 581-694 40-171 (185)
200 1l8d_A DNA double-strand break 34.5 2.2E+02 0.0074 25.4 9.6 25 615-639 18-42 (112)
201 1fxk_A Prefoldin; archaeal pro 33.6 1.6E+02 0.0055 25.9 8.5 83 618-700 12-99 (107)
202 3swy_A Cyclic nucleotide-gated 33.5 93 0.0032 24.3 5.8 38 579-616 2-39 (46)
203 2v71_A Nuclear distribution pr 33.5 2.5E+02 0.0087 28.1 10.6 26 613-638 55-80 (189)
204 1hjb_A Ccaat/enhancer binding 33.3 1.4E+02 0.0048 26.3 7.7 28 602-633 21-48 (87)
205 2w83_C C-JUN-amino-terminal ki 33.1 53 0.0018 28.3 4.7 48 586-637 27-74 (77)
206 3u1c_A Tropomyosin alpha-1 cha 33.0 2.7E+02 0.0091 24.9 11.2 43 603-645 18-62 (101)
207 3hnw_A Uncharacterized protein 32.1 2.6E+02 0.0088 26.5 10.0 20 670-689 114-133 (138)
208 2xus_A Breast cancer metastasi 31.8 42 0.0014 26.6 3.6 22 681-702 14-35 (49)
209 3lss_A Seryl-tRNA synthetase; 31.7 1.1E+02 0.0037 35.2 8.5 35 667-701 100-139 (484)
210 3hie_A Protein PSL1, exocyst c 30.8 3.2E+02 0.011 26.9 10.6 80 37-126 64-149 (171)
211 2zqm_A Prefoldin beta subunit 30.7 1.7E+02 0.0059 26.1 8.3 27 673-699 84-110 (117)
212 3he5_B Synzip2; heterodimeric 30.5 1.6E+02 0.0053 22.6 6.3 16 671-686 36-51 (52)
213 3oja_A Leucine-rich immune mol 29.7 1.9E+02 0.0065 32.3 10.2 95 609-703 355-451 (487)
214 3qr0_A Phospholipase C-beta (P 29.5 1E+02 0.0034 37.7 8.2 24 102-125 119-142 (816)
215 2zkm_X 1-phosphatidylinositol- 29.1 72 0.0025 38.8 6.9 36 90-125 98-135 (799)
216 3ra3_A P1C; coiled coil domain 29.1 32 0.0011 23.3 2.1 19 674-692 8-26 (28)
217 3c3g_A Alpha/beta peptide with 28.7 62 0.0021 23.5 3.6 24 665-688 6-29 (33)
218 4f61_I Stathmin-like domain R4 28.5 1.2E+02 0.0041 31.5 7.4 50 599-648 127-187 (240)
219 1joc_A EEA1, early endosomal a 27.8 74 0.0025 29.7 5.3 33 668-700 6-38 (125)
220 2v4h_A NF-kappa-B essential mo 27.8 1.7E+02 0.0059 26.8 7.4 21 618-638 87-107 (110)
221 2z5i_A TM, general control pro 27.7 80 0.0027 25.2 4.7 30 672-701 4-33 (52)
222 1wle_A Seryl-tRNA synthetase; 27.0 3.1E+02 0.011 31.5 11.3 35 666-700 116-150 (501)
223 2r2v_A GCN4 leucine zipper; co 26.9 95 0.0032 22.7 4.4 25 613-637 7-31 (34)
224 2lw1_A ABC transporter ATP-bin 26.8 2.2E+02 0.0076 24.7 7.9 28 665-692 55-82 (89)
225 1gu4_A CAAT/enhancer binding p 26.6 1.2E+02 0.0041 26.2 6.0 16 602-617 21-36 (78)
226 2lf0_A Uncharacterized protein 26.4 2.1E+02 0.0071 26.7 7.7 51 625-687 7-57 (123)
227 2yy0_A C-MYC-binding protein; 26.3 87 0.003 25.1 4.7 35 664-698 17-51 (53)
228 4dzn_A Coiled-coil peptide CC- 25.9 1.1E+02 0.0039 21.4 4.5 28 668-695 4-31 (33)
229 3he4_A Synzip6; heterodimeric 25.9 64 0.0022 25.0 3.6 13 675-687 40-52 (56)
230 3pk1_B Apoptosis regulator BAX 25.8 32 0.0011 25.1 1.8 17 596-612 17-33 (34)
231 3a98_B Engulfment and cell mot 25.8 2.6E+02 0.0089 28.2 9.3 34 90-125 117-150 (203)
232 1ci6_A Transcription factor AT 25.7 1.4E+02 0.0047 24.6 5.9 21 618-638 13-33 (63)
233 3mq7_A Bone marrow stromal ant 25.6 4.1E+02 0.014 24.7 11.4 26 675-700 73-98 (121)
234 2jee_A YIIU; FTSZ, septum, coi 25.5 1.3E+02 0.0046 26.2 6.0 37 664-700 11-47 (81)
235 2wvr_A Geminin; DNA replicatio 25.4 1.2E+02 0.0042 30.7 6.5 25 670-694 119-143 (209)
236 1ik9_A DNA repair protein XRCC 25.3 1.6E+02 0.0055 30.0 7.7 55 586-640 150-212 (213)
237 3u59_A Tropomyosin beta chain; 25.1 3.6E+02 0.012 23.9 11.2 36 603-638 18-54 (101)
238 1t2k_D Cyclic-AMP-dependent tr 24.9 1.1E+02 0.0038 24.8 5.2 31 666-696 29-59 (61)
239 3a58_A Exocyst complex compone 24.6 2.1E+02 0.007 30.9 8.5 83 34-126 131-219 (320)
240 3ra3_A P1C; coiled coil domain 24.6 85 0.0029 21.3 3.5 25 674-698 1-25 (28)
241 3u06_A Protein claret segregat 24.6 2E+02 0.0069 32.1 9.0 53 623-699 5-57 (412)
242 3u06_A Protein claret segregat 24.6 81 0.0028 35.3 5.8 44 613-656 16-59 (412)
243 2lw1_A ABC transporter ATP-bin 24.2 69 0.0023 28.0 4.1 27 672-698 21-47 (89)
244 3kbt_A Beta-I spectrin, spectr 24.2 6E+02 0.02 26.1 12.7 117 580-696 145-279 (326)
245 3m0d_C TNF receptor-associated 24.0 2.1E+02 0.0073 23.5 6.8 56 581-636 5-63 (65)
246 3ulb_A Target of rapamycin com 23.5 3.7E+02 0.013 25.1 9.0 27 99-125 88-114 (121)
247 2pnv_A Small conductance calci 23.5 70 0.0024 24.7 3.4 22 676-697 19-40 (43)
248 2oxj_A Hybrid alpha/beta pepti 23.0 91 0.0031 22.8 3.6 23 666-688 8-30 (34)
249 2bni_A General control protein 22.8 92 0.0031 22.8 3.6 25 664-688 6-30 (34)
250 2hy6_A General control protein 22.4 1.1E+02 0.0038 22.3 4.0 26 664-689 6-31 (34)
251 2jee_A YIIU; FTSZ, septum, coi 21.5 3.3E+02 0.011 23.7 7.7 62 583-648 14-76 (81)
252 1s1c_X RHO-associated, coiled- 21.3 3.3E+02 0.011 23.1 7.5 13 632-644 43-55 (71)
253 4emc_A Monopolin complex subun 21.2 2.4E+02 0.0082 28.3 7.7 16 623-638 22-37 (190)
254 1wlq_A Geminin; coiled-coil; 2 21.2 1.9E+02 0.0064 25.4 6.0 28 669-696 41-68 (83)
255 3swf_A CGMP-gated cation chann 21.1 1.6E+02 0.0056 25.2 5.5 34 580-613 5-38 (74)
256 2oqq_A Transcription factor HY 21.1 1.3E+02 0.0045 23.0 4.4 27 610-636 6-32 (42)
257 3fse_A Two-domain protein cont 20.7 5.2E+02 0.018 28.3 11.2 31 662-695 316-346 (365)
258 1ci6_A Transcription factor AT 20.1 1.8E+02 0.006 23.9 5.5 43 617-690 19-61 (63)
No 1
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens}
Probab=100.00 E-value=8.4e-41 Score=346.60 Aligned_cols=205 Identities=25% Similarity=0.402 Sum_probs=178.0
Q ss_pred cccccCCCCCCCcccccchHHHhhh-cCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcCC-CCCCC--
Q 002837 152 FHQWRDKRPVKSLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSA-- 227 (875)
Q Consensus 152 ~~~~k~k~~~k~~VFGvpL~~ll~~-~~~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G~-~~~~~-- 227 (875)
.+.++.++..+..+||++|..++.+ +..||.+|.+|+.||+++|+.+|||||++|+...|+.++..|+.|. ..+..
T Consensus 6 ~~~l~~~~~~~~~vFG~~L~~~~~~~~~~vP~~v~~~i~~l~~~gl~~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~ 85 (214)
T 3byi_A 6 LKTLQEKGLIKDQIFGSHLHKVCERENSTVPWFVKQCIEAVEKRGLDVDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQ 85 (214)
T ss_dssp HHHHHHHTSCCCCSTTSCHHHHHHHHTCSSCHHHHHHHHHHHHHTTTSTTTTTSCCCHHHHHHHHHHHHTTCCCCTTSGG
T ss_pred hhhHHhcCCCcCCccCCcHHHHHHHcCCCCChHHHHHHHHHHHhCCCCCCccccCCCHHHHHHHHHHHhcCCCCCCCccc
Confidence 3445556777889999999999975 5679999999999999999999999999999999999999999986 33322
Q ss_pred CCCcchhhhhhhhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCC
Q 002837 228 DEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHEN 307 (875)
Q Consensus 228 ~~D~h~VAslLK~fLReLPePLLp~~ly~~~i~~~~~~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~N 307 (875)
..|+|+||++||.|||+||+||||+++|+.|+.+.+..+.++++..++. ++.+||++|+.+|+||+.||++|+.|++.|
T Consensus 86 ~~dvh~va~lLK~flreLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~-ll~~LP~~n~~~L~~L~~~L~~v~~~s~~N 164 (214)
T 3byi_A 86 WEDIHVVTGALKMFFRELPEPLFPYSFFEQFVEAIKKQDNNTRIEAVKS-LVQKLPPPNRDTMKVLFGHLTKIVAKASKN 164 (214)
T ss_dssp GCSHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHTSSSHHHHHHHHHH-HHHHSCHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred ccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHHHHHcccCC
Confidence 2599999999999999999999999999999999999999999999998 557999999999999999999999999999
Q ss_pred CCCccchhhhccccccCCCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCc
Q 002837 308 RMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDE 375 (875)
Q Consensus 308 KMta~NLAi~FaP~LLrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~~ 375 (875)
||++.|||+||||+|+|++.... + . +......+.+|++||+||+.||+++
T Consensus 165 kM~~~NLa~vf~P~Ll~~~~~~~-----------~--~-----~~~~~~~~~vve~LI~~~~~iF~~d 214 (214)
T 3byi_A 165 LMSTQSLGIVFGPTLLRAENETG-----------N--M-----AIHMVYQNQIAELMLSEYSKIFGSE 214 (214)
T ss_dssp CCCHHHHHHHHHHHHHCCTTSSS-----------C--H-----HHHHHHHHHHHHHHHHTHHHHHC--
T ss_pred CCCHHHhHHHhccccCCCCCccH-----------H--H-----HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999873210 0 0 1123456789999999999999874
No 2
>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.3e-40 Score=341.60 Aligned_cols=196 Identities=25% Similarity=0.408 Sum_probs=173.1
Q ss_pred CCCCCcccccchHHHhhhcCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcCCCCCCCCCCcchhhhhh
Q 002837 159 RPVKSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCV 238 (875)
Q Consensus 159 ~~~k~~VFGvpL~~ll~~~~~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G~~~~~~~~D~h~VAslL 238 (875)
.+.++.+||++|..++++ ++||.+|.+|+.||+++|+.+|||||++|+...++++++.|+.|.......+|+|+||++|
T Consensus 6 ~~~~~~vFG~~L~~~~~~-~~vP~~v~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~d~~~va~lL 84 (201)
T 3msx_B 6 SPMPGQLFGISLPNICEN-DNLPKPVLDMLFFLNQKGPLTKGIFRQSANVKSCRELKEKLNSGVEVHLDCESIFVIASVL 84 (201)
T ss_dssp ----CCCTTSCHHHHSGG-GCCCHHHHHHHHHHHHHGGGSTTTTTSCCCHHHHHHHHHHHHHTCCCCTTSSCHHHHHHHH
T ss_pred CCCCCCeeCCcHHHHhcC-CCCCHHHHHHHHHHHHhCCCCCCeeeeCCCHHHHHHHHHHhccCCCCCCCcccHHHHHHHH
Confidence 345678999999999875 5799999999999999999999999999999999999999999976556678999999999
Q ss_pred hhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCCCCccchhhhc
Q 002837 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (875)
Q Consensus 239 K~fLReLPePLLp~~ly~~~i~~~~~~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~F 318 (875)
|.|||+||+||||.++|+.|+.+....+.++++..++. ++.+||+.|+.+|+||+.||++|+.|++.|||++.|||+||
T Consensus 85 K~flreLp~pLl~~~l~~~~~~~~~~~~~~~~~~~~~~-ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~vf 163 (201)
T 3msx_B 85 KDFLRNIPGSIFSSDLYDHWVSVMDQGNDEEKINTVQR-LLDQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVCV 163 (201)
T ss_dssp HHHHHTSTTTTTTGGGHHHHHHGGGSSSHHHHHHHHHH-HHTTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHHH
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHccccHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHhccccCCCChhhhhhhh
Confidence 99999999999999999999999999999999999998 56899999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 002837 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (875)
Q Consensus 319 aP~LLrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF 372 (875)
||+|||++..... .+ .......++.+|++||+||+.||
T Consensus 164 ~P~ll~~~~~~~~--------------~~--~~~~~~~~~~iv~~LI~~~~~IF 201 (201)
T 3msx_B 164 APSILWPPASSSP--------------EL--ENEFTKKVSLLIQFLIENCLRIF 201 (201)
T ss_dssp HHHHCCCCTTSCH--------------HH--HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hccccCCCCCCCh--------------HH--HHHHHHHHHHHHHHHHHhhHhhC
Confidence 9999999843211 11 11223556778999999999998
No 3
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A
Probab=100.00 E-value=2.4e-40 Score=342.03 Aligned_cols=197 Identities=23% Similarity=0.394 Sum_probs=174.7
Q ss_pred CCCcccccchHHHhhhcCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcCCCC-CC-CCCCcchhhhhh
Q 002837 161 VKSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE-FS-ADEDAHVIGDCV 238 (875)
Q Consensus 161 ~k~~VFGvpL~~ll~~~~~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G~~~-~~-~~~D~h~VAslL 238 (875)
.+..+||+||..++.....||.+|.+|+.||+++|+.+|||||++|+..+++.+++.|+.|... +. ...|+|+||++|
T Consensus 8 ~~~~~FG~~L~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~d~~~va~lL 87 (209)
T 2ee4_A 8 WESNYFGMPLQDLVTAEKPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSMEVTVNAVAGAL 87 (209)
T ss_dssp SCCSSSSSCHHHHSCSSCCSCHHHHHHHHHHHHTCSCCTTTTTSCCCHHHHHHHHHHHHHCTTCCHHHHTCCHHHHHHHH
T ss_pred CCCCeeCCcHHHHHhcCCCCChHHHHHHHHHHHhCCCCCCccccCCCHHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHH
Confidence 3467999999999988788999999999999999999999999999999999999999998632 21 247999999999
Q ss_pred hhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCCCCccchhhhc
Q 002837 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (875)
Q Consensus 239 K~fLReLPePLLp~~ly~~~i~~~~~~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~F 318 (875)
|.|||+||+||||+++|+.|+.+.+..+.++++..++. ++.+||+.|+.+|+||+.||++|+.+++.|||++.|||+||
T Consensus 88 K~flreLPePLi~~~l~~~~~~~~~~~~~~~~~~~l~~-ll~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLaivf 166 (209)
T 2ee4_A 88 KAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALKE-IVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTADNLSICF 166 (209)
T ss_dssp HHHHHHSSSCSSCTTTHHHHHHHHSCSSHHHHHHHHHH-HTTTSCTTHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHH
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHh
Confidence 99999999999999999999999999999999999998 56799999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCcc
Q 002837 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (875)
Q Consensus 319 aP~LLrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~~~ 376 (875)
||+|+|++..+...+.+ +...+.+|++||+||+.||+++.
T Consensus 167 ~P~L~~~~~~~~~~l~~------------------~~~~~~vve~LI~~~~~iF~~~~ 206 (209)
T 2ee4_A 167 WPTLMRPDFENREFLST------------------TKIHQSVVETFIQQCQFFFYNGE 206 (209)
T ss_dssp HHHHSCCCCCSSCCSCC------------------CTTHHHHHHHHHHTHHHHTTCCC
T ss_pred cccccCCCCccHHHHHH------------------hHHHHHHHHHHHHhhHHHcCCCC
Confidence 99999987432211111 12356899999999999999765
No 4
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens}
Probab=100.00 E-value=5.4e-40 Score=343.98 Aligned_cols=210 Identities=20% Similarity=0.281 Sum_probs=167.4
Q ss_pred cccCCCCCCCcccccchHHHhhh-cCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcCCCCCCCC----
Q 002837 154 QWRDKRPVKSLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSAD---- 228 (875)
Q Consensus 154 ~~k~k~~~k~~VFGvpL~~ll~~-~~~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G~~~~~~~---- 228 (875)
.|+.+...+.+|||++|..++.. +..||.+|.+|+.||+++|+ +|||||++|+...|++|++.|+.|.......
T Consensus 10 ~~~~~~~~~~~vFG~~L~~~~~~~~~~vP~iv~~~i~~i~~~gl-~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~~~ 88 (229)
T 3iug_A 10 GRENLYFQGERVFGCDLGEHLLNSGFEVPQVLQSCTAFIERYGI-VDGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYV 88 (229)
T ss_dssp --------CCCSTTSCHHHHHHHHCCSSCHHHHHHHHHHHHHCC-STTTTTSCCCHHHHHHHHHHHHTTCCCCTTSTTTT
T ss_pred ccCCCCCCCCCeECcchHHHHHhcCCCCCHHHHHHHHHHHHcCC-CCCCeecCCcHHHHHHHHHHHhcCCCCCccccccc
Confidence 35566667789999999998875 56799999999999999999 8999999999999999999999986433222
Q ss_pred CCcchhhhhhhhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCC
Q 002837 229 EDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENR 308 (875)
Q Consensus 229 ~D~h~VAslLK~fLReLPePLLp~~ly~~~i~~~~~~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NK 308 (875)
.|+|+||++||.|||+||+||||+++|+.|+.+....+.++++..++. ++.+||+.|+.+|+||+.||++|+.|++.||
T Consensus 89 ~dvh~va~lLK~fLreLPePLl~~~ly~~~~~~~~~~~~~~~~~~l~~-ll~~LP~~n~~~L~~L~~~L~~V~~~s~~Nk 167 (229)
T 3iug_A 89 QDIHSVGSLCKLYFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHD-VIQQLPPPHYRTLEFLMRHLSLLADYCSITN 167 (229)
T ss_dssp TCHHHHHHHHHHHHHHCSSCTTCTTTHHHHHHHHTSSSHHHHHHHHHH-HHTTSCHHHHHHHHHHHHHHHHHHTTHHHHC
T ss_pred cchHHHHHHHHHHHHHCCCCCcCHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHhccCccC
Confidence 599999999999999999999999999999999999999999999998 5679999999999999999999999999999
Q ss_pred CCccchhhhccccccCCCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCccc
Q 002837 309 MTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESL 377 (875)
Q Consensus 309 Mta~NLAi~FaP~LLrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~~~~ 377 (875)
|++.|||+||||+|||++...... . ...+........+.+|++||+||+.||+++..
T Consensus 168 M~~~NLAivf~P~Ll~~~~~~~~~------~------~~~~~~~~~~~~~~vve~LI~~~~~iF~~~~~ 224 (229)
T 3iug_A 168 MHAKNLAIVWAPNLLRSKQIESAC------F------SGTAAFMEVRIQSVVVEFILNHVDVLFSGRIS 224 (229)
T ss_dssp CCHHHHHHHHHHHHCCC-------------------------------CHHHHHHHHHTHHHHTC----
T ss_pred CChHHHHHHHhccccCCCcccccc------c------chHHHHHHHHHHHHHHHHHHHhHHHhCCCcHH
Confidence 999999999999999987321100 0 00112223445678999999999999998763
No 5
>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B*
Probab=100.00 E-value=1.5e-39 Score=333.37 Aligned_cols=193 Identities=25% Similarity=0.369 Sum_probs=169.4
Q ss_pred CCCCCcccccchHHHhhhcC---CCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcCCCC-CCCCCCcchh
Q 002837 159 RPVKSLVVGRPILLALEDID---GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE-FSADEDAHVI 234 (875)
Q Consensus 159 ~~~k~~VFGvpL~~ll~~~~---~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G~~~-~~~~~D~h~V 234 (875)
.+.+..+||++|..++.+.. .||.+|.+|+.||+++|+.+|||||++|+..+|+.+++.|+.|... +....|+|++
T Consensus 2 ~~~~~~vFG~~L~~~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~~ 81 (198)
T 1tx4_A 2 PPLPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNALHLP 81 (198)
T ss_dssp -CCTTCCTTSCHHHHHHHSTTCCSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGGSSCTHHH
T ss_pred CCCCCCccCCcHHHHHhhCCCCCCCCHHHHHHHHHHHHhCCCCCCeeecCCcHHHHHHHHHHHhCCCCCCccccccchHH
Confidence 35667899999999998643 7999999999999999999999999999999999999999999643 3334689999
Q ss_pred hhhhhhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCCCCccch
Q 002837 235 GDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAV 314 (875)
Q Consensus 235 AslLK~fLReLPePLLp~~ly~~~i~~~~~~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NL 314 (875)
|++||.|||+||+||||+++|+.|+.+... +.++++..++. ++.+||+.|+.+|+||+.||++|+.|++.|||++.||
T Consensus 82 a~lLK~flreLpePLi~~~l~~~~~~~~~~-~~~~~~~~l~~-ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nL 159 (198)
T 1tx4_A 82 AVILKTFLRELPEPLLTFDLYPHVVGFLNI-DESQRVPATLQ-VLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNL 159 (198)
T ss_dssp HHHHHHHHHHSSSCTTCGGGHHHHHTGGGS-CGGGHHHHHHH-HHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHH
T ss_pred HHHHHHHHHHCCCcCCCHHHHHHHHHHHcC-CHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHH
Confidence 999999999999999999999999998765 45788999998 5689999999999999999999999999999999999
Q ss_pred hhhccccccCCCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 002837 315 AACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (875)
Q Consensus 315 Ai~FaP~LLrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF 372 (875)
|+||||+|+|++.. . ..+.....++.+|++||+||+.||
T Consensus 160 a~vf~P~Ll~~~~~---------------~----~~~~~~~~~~~~v~~LI~~~~~iF 198 (198)
T 1tx4_A 160 AVVFGPNLLWAKDA---------------A----ITLKAINPINTFTKFLLDHQGELF 198 (198)
T ss_dssp HHHHHHHHCCCSSH---------------H----HHHHTHHHHHHHHHHHHHTHHHHC
T ss_pred HhhhcccccCCCCc---------------c----ccHHHHHHHHHHHHHHHHhHHHhC
Confidence 99999999998721 0 112334567789999999999998
No 6
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.6e-39 Score=344.20 Aligned_cols=197 Identities=24% Similarity=0.435 Sum_probs=174.5
Q ss_pred CCCCCcccccchHHHhhhcCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcCCCCCC--CCCCcchhhh
Q 002837 159 RPVKSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFS--ADEDAHVIGD 236 (875)
Q Consensus 159 ~~~k~~VFGvpL~~ll~~~~~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G~~~~~--~~~D~h~VAs 236 (875)
...+..|||+||..++...+.||.+|.+|+.||+++|+.+|||||++|+...|+.|++.|+.|..... .++|||+||+
T Consensus 47 ~~~~~~vFGv~L~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIFR~sG~~~~v~~L~~~~d~~~~~~~~~~~~dvh~va~ 126 (246)
T 3fk2_A 47 ATWESNYFGVPLTTVVTPEKPIPIFIERCIEYIEATGLSTEGIYRVSGNKSEMESLQRQFDQDHNLDLAEKDFTVNTVAG 126 (246)
T ss_dssp --CCCSSTTSCGGGGCCSSSCSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHHHCTTCCSGGGTCCHHHHHH
T ss_pred cccCCCeeCCCHHHHhcCCCCCChHHHHHHHHHHHhCCCCCCeeEeCCcHHHHHHHHHHHhcCCCCCcccccCcHHHHHH
Confidence 34457899999999998878999999999999999999999999999999999999999999863332 2469999999
Q ss_pred hhhhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCCCCccchhh
Q 002837 237 CVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAA 316 (875)
Q Consensus 237 lLK~fLReLPePLLp~~ly~~~i~~~~~~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi 316 (875)
+||.|||+||+||||+++|+.|+.+....+.++++..++. ++..||++|+.+|+||+.||++|+.+++.|+||+.|||+
T Consensus 127 lLK~fLReLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~-ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkMt~~NLAi 205 (246)
T 3fk2_A 127 AMKSFFSELPDPLVPYNMQIDLVEAHKINDREQKLHALKE-VLKKFPKENHEVFKYVISHLNKVSHNNKVNLMTSENLSI 205 (246)
T ss_dssp HHHHHHHHSSSCSSCHHHHHHHHHHTTCCSHHHHHHHHHH-HHHTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHH
T ss_pred HHHHHHHhCCCccCCHHHHHHHHHHhccCCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHhccCccCCchHHhHH
Confidence 9999999999999999999999999999999999999998 557999999999999999999999999999999999999
Q ss_pred hccccccCCCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 002837 317 CMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDD 374 (875)
Q Consensus 317 ~FaP~LLrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~ 374 (875)
||||+|||+...+ + .++.....++.||++||+||+.||.+
T Consensus 206 vf~P~Llrp~~~~---~---------------~~~~~~~~~~~ive~LI~~~~~iF~n 245 (246)
T 3fk2_A 206 CFWPTLMRPDFST---M---------------DALTATRTYQTIIELFIQQCPFFFYN 245 (246)
T ss_dssp HHHHHHHCCCSSS---S---------------CHHHHHHHHHHHHHHHHHTHHHHHC-
T ss_pred HhcccccCCCCcc---H---------------HHHHHHHHHHHHHHHHHHhHHHhcCC
Confidence 9999999986321 1 11233456779999999999999985
No 7
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens}
Probab=100.00 E-value=3.8e-39 Score=331.36 Aligned_cols=192 Identities=18% Similarity=0.330 Sum_probs=170.4
Q ss_pred CcccccchHHHhhh-cCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcC-C-CCCC--CCCCcchhhhh
Q 002837 163 SLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG-K-TEFS--ADEDAHVIGDC 237 (875)
Q Consensus 163 ~~VFGvpL~~ll~~-~~~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G-~-~~~~--~~~D~h~VAsl 237 (875)
.+|||+||..++.. +..||.+|.+|+.||+++|+.+|||||++|+..+|+.+++.|+.| . .++. ...|+|+||++
T Consensus 6 ~~vFG~~L~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~d~~~~~~~d~~~va~l 85 (202)
T 2osa_A 6 KKVYSCDLTTLVKAHTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGA 85 (202)
T ss_dssp -CCTTSCHHHHHHHHTCSSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHHHHHHH
T ss_pred CCccCCChHHHHHHcCCCCCcHHHHHHHHHHHhCCCcCCeeeecCcHHHHHHHHHHHHcCCCccCCCccccccHHHHHHH
Confidence 46999999999976 467999999999999999999999999999999999999999985 3 3333 23699999999
Q ss_pred hhhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCCCCccchhhh
Q 002837 238 VKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAAC 317 (875)
Q Consensus 238 LK~fLReLPePLLp~~ly~~~i~~~~~~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~ 317 (875)
||.|||+||+||||+++|+.|+.+.+..+.++++..++. ++..||++|+.+|+||+.||++|+.|++.|||++.|||+|
T Consensus 86 LK~flreLpePLl~~~~~~~~~~~~~~~~~~~~~~~l~~-ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~NLa~v 164 (202)
T 2osa_A 86 LKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHE-ALKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIV 164 (202)
T ss_dssp HHHHHHTCSSCSSCTTTHHHHHHHHHCCSHHHHHHHHHH-HHHTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHH
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHH
Confidence 999999999999999999999999999999999999998 5579999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 002837 318 MAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (875)
Q Consensus 318 FaP~LLrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF 372 (875)
|||+|+|++..+ . ...+......+.+|++||+||+.||
T Consensus 165 f~P~Ll~~~~~~--------------~---~~~~~~~~~~~~vve~LI~~~~~iF 202 (202)
T 2osa_A 165 FGPTLMRSPELD--------------A---MAALNDIRYQRLVVELLIKNEDILF 202 (202)
T ss_dssp HHHHHCCCCCCC--------------H---HHHHHHHHHHHHHHHHHHHTHHHHC
T ss_pred HccccCCCCCcc--------------H---HHHHHHHHHHHHHHHHHHHcccccC
Confidence 999999987311 1 1223344567899999999999998
No 8
>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1
Probab=100.00 E-value=2.3e-39 Score=339.92 Aligned_cols=194 Identities=23% Similarity=0.329 Sum_probs=155.0
Q ss_pred cccccchHHHhhhcC----CCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHH-HHhcCC---CCCC--CCCCcch
Q 002837 164 LVVGRPILLALEDID----GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQ-EYEQGK---TEFS--ADEDAHV 233 (875)
Q Consensus 164 ~VFGvpL~~ll~~~~----~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~-~ld~G~---~~~~--~~~D~h~ 233 (875)
+|||+||...+++.. .+|.+|.+|+.||+++|+.+|||||++|+..+|+++++ .++.|. ..+. ..+|+|+
T Consensus 17 pvfgvpl~~~~~~~~~l~~~~p~iv~~ci~~le~~gl~~eGIfR~sG~~~~v~~l~~~~~d~~~~~~~~l~~~~~~dvh~ 96 (231)
T 1f7c_A 17 PVYNSNKDNQSEGTAQLDSIGFSIIKKCIHAVETRGINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEIKT 96 (231)
T ss_dssp --------------CCSSHHHHHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHCC------CCCCCTTSCHHH
T ss_pred CccCCcchhccccccccCCcCccHHHHHHHHHHHhCCCCCCeeeeCCcHHHHHHHHHHHhCcCCCcccCccccccccHHH
Confidence 489999998887532 37999999999999999999999999999999999987 478763 2232 2479999
Q ss_pred hhhhhhhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCCCCccc
Q 002837 234 IGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSA 313 (875)
Q Consensus 234 VAslLK~fLReLPePLLp~~ly~~~i~~~~~~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~N 313 (875)
||++||.|||+||+||||+++|+.|+.+.+..+.++++..++. ++.+||++|+.+|+||+.||++|+.|++.|||++.|
T Consensus 97 va~lLK~flReLPePLl~~~ly~~~~~~~~~~~~~~r~~~l~~-ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~N 175 (231)
T 1f7c_A 97 ITSALKTYLRMLPGPLMMYQFQRSFIKAAKLENQESRVSEIHS-LVHRLPEKNRQMLHLLMNHLAKVADNHKQNLMTVAN 175 (231)
T ss_dssp HHHHHHHHHHTSSSCTTCHHHHHHHHHHHTCSSHHHHHHHHHH-HHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHH
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHhcCCCCCCCHHH
Confidence 9999999999999999999999999999999999999999998 568999999999999999999999999999999999
Q ss_pred hhhhccccccCCCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCcc
Q 002837 314 VAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (875)
Q Consensus 314 LAi~FaP~LLrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~~~ 376 (875)
||+||||+|||++..+... +......+.+|++||+||+.||++..
T Consensus 176 LAivf~P~Ll~~~~~~~~~------------------~~~~~~~~~vve~LI~~~~~iF~~~~ 220 (231)
T 1f7c_A 176 LGVVFGPTLLRPQEETVAA------------------IMDIKFQNIVIEILIENHEKIFNTVP 220 (231)
T ss_dssp HHHHHHHHHSCC---CCSG------------------GGGHHHHHHHHHHHHHTHHHHHHSCC
T ss_pred HHHHhccccCCCCcccHHH------------------HHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999987422111 11234566899999999999999876
No 9
>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B*
Probab=100.00 E-value=1.3e-38 Score=336.49 Aligned_cols=198 Identities=24% Similarity=0.344 Sum_probs=169.6
Q ss_pred CCCCCCcccccchHHHhhhcC---CCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcCCCCCCC-CCCcch
Q 002837 158 KRPVKSLVVGRPILLALEDID---GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSA-DEDAHV 233 (875)
Q Consensus 158 k~~~k~~VFGvpL~~ll~~~~---~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G~~~~~~-~~D~h~ 233 (875)
+.+.+..+||++|..++.+.. .||.+|.+|+.||+++|+.+|||||++|+..+|+.+++.|+.|...... ..|+|+
T Consensus 37 ~~~~~~~vFG~~L~~~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~dv~~ 116 (242)
T 1ow3_A 37 RPPLPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNELHL 116 (242)
T ss_dssp --CCTTCCSSSCHHHHHHHSTTCCSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGGSSCTHH
T ss_pred CCCCCCCccCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHcCCCCCceeeeCCcHHHHHHHHHHHhcCCCCCcccccchHH
Confidence 345667899999999997643 7999999999999999999999999999999999999999999643333 359999
Q ss_pred hhhhhhhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCCCCccc
Q 002837 234 IGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSA 313 (875)
Q Consensus 234 VAslLK~fLReLPePLLp~~ly~~~i~~~~~~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~N 313 (875)
+|++||.|||+||+||||+++|+.|+.+... +.++++..++. ++.+||+.|+.+|+||+.||++|+.|++.|||++.|
T Consensus 117 va~lLK~flReLPePLl~~~ly~~~~~~~~~-~~~~~~~~l~~-ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~N 194 (242)
T 1ow3_A 117 PAVILKTFLRELPEPLLTFDLYPHVVGFLNI-DESQRVPATLQ-VLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTN 194 (242)
T ss_dssp HHHHHHHHHHHSSSCTTCGGGHHHHHTGGGS-CGGGHHHHHHH-HHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHcC-CHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHhccCcCCCCHHH
Confidence 9999999999999999999999999998765 45788999998 568999999999999999999999999999999999
Q ss_pred hhhhccccccCCCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCcc
Q 002837 314 VAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (875)
Q Consensus 314 LAi~FaP~LLrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~~~ 376 (875)
||+||||+|+|++.. . ..+.....++.+|++||+||+.||++..
T Consensus 195 LAivf~P~Ll~~~~~---------------~----~~~~~~~~~~~~v~~LI~~~~~iF~~~~ 238 (242)
T 1ow3_A 195 LAVVFGPNLLWAKDA---------------A----ITLKAINPINTFTKFLLDHQGELFPSPD 238 (242)
T ss_dssp HHHHHHHHHCCCSSH---------------H----HHHHTHHHHHHHHHHHHHTHHHHC----
T ss_pred hHHhhcchhCCCCCc---------------c----ccHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 999999999998621 0 1123345567899999999999998764
No 10
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1
Probab=100.00 E-value=3.1e-38 Score=328.01 Aligned_cols=191 Identities=20% Similarity=0.262 Sum_probs=158.7
Q ss_pred CcccccchHHHhhhc---CCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcCC-CCCCCCCCcchhhhhh
Q 002837 163 SLVVGRPILLALEDI---DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCV 238 (875)
Q Consensus 163 ~~VFGvpL~~ll~~~---~~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G~-~~~~~~~D~h~VAslL 238 (875)
..+||++|..++++. ..||.+|.+|+.||+++|+.+|||||++|+... +.|++.|+.|. ......+|+|+||++|
T Consensus 5 ~~~fGv~L~~l~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~-~~l~~~~d~~~~~~~~~~~dv~~va~lL 83 (216)
T 1pbw_A 5 VEQQALTLPDLAEQFAPPDIAPPLLIKLVEAIEKKGLECSTLYRTQSSSNL-AELRQLLDCDTPSVDLEMIDVHVLADAF 83 (216)
T ss_dssp -------CCCHHHHCCTTSCSCHHHHHHHHHHHHHHTTCTTTTSSCCSCCT-THHHHHSCSSSSCCCGGGBCHHHHHHHH
T ss_pred cccCCCcHHHHHhccCCCCCcCHHHHHHHHHHHHcCCCCCCeeeCCChHHH-HHHHHHHHcCCCCCCccccCHHHHHHHH
Confidence 458999999999853 579999999999999999999999999999999 99999999985 2334568999999999
Q ss_pred hhhhccCCCCCCChhhHHHHHHHHh-cCCHHHHHHHHHHHHHh--hCChhHHHHHHHHHHHHHHHhcCcCCCCCCccchh
Q 002837 239 KHVLRELPSSPVPASCCTALLEAYK-IDRKEARISAMRSAILE--TFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVA 315 (875)
Q Consensus 239 K~fLReLPePLLp~~ly~~~i~~~~-~~~~eeri~~l~~lLl~--~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLA 315 (875)
|.|||+||+||||+++|+.|+.+.+ ..+.++++..++. ++. +||+.|+.+|+||+.||++|+.|++.|||++.|||
T Consensus 84 K~flReLPePLl~~~ly~~~~~~~~~~~~~~~~~~~l~~-ll~~~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLA 162 (216)
T 1pbw_A 84 KRYLLDLPNPVIPAAVYSEMISLAPEVQSSEEYIQLLKK-LIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVLS 162 (216)
T ss_dssp HHHHHTSSSCSSCHHHHHHHHHHGGGCCSHHHHHHHHHH-HHTCTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHH
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhhccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHH
Confidence 9999999999999999999999986 6778899999998 567 89999999999999999999999999999999999
Q ss_pred hhccccccCCCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCcc
Q 002837 316 ACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (875)
Q Consensus 316 i~FaP~LLrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~~~ 376 (875)
+||||+|||++..+ .. . ....+.+|++||+||+.||+..+
T Consensus 163 ivf~P~Ll~~~~~~--------------~~------~-~~~~~~vve~LI~~~~~iF~~~P 202 (216)
T 1pbw_A 163 EIFSPMLFRFSAAS--------------SD------N-TENLIKVIEILISTEWNERQPAP 202 (216)
T ss_dssp HHHHHHHHTCSSCC--------------HH------H-HHHHHHHHHHHHHTTC-------
T ss_pred HHHhhhcCCCCCCc--------------hh------h-hHHHHHHHHHHHhhhHHhcCCCC
Confidence 99999999987321 00 1 15678999999999999999875
No 11
>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.7e-37 Score=325.11 Aligned_cols=209 Identities=21% Similarity=0.326 Sum_probs=167.8
Q ss_pred CCCcccccchHHHhhh-cCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcCC-CCCCCCCCcchhhhhh
Q 002837 161 VKSLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCV 238 (875)
Q Consensus 161 ~k~~VFGvpL~~ll~~-~~~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G~-~~~~~~~D~h~VAslL 238 (875)
..+.|||+||..++++ +..||.+|.+|+.||+++|+.+|||||++|+..+|+.|++.|+.+. ......+|+|+||++|
T Consensus 16 ~~~~vFGv~L~~~~~~~~~~vP~~v~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~~va~lL 95 (228)
T 3kuq_A 16 FQGSVFGVPLTVNVQRTGQPLPQSIQQAMRYLRNHCLDQVGLFRKSGVKSRIQALRQMNEGAIDCVNYEGQSAYDVADML 95 (228)
T ss_dssp CTTSSTTCCHHHHHHHHSSSSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHTBSSSCCCCTTCCHHHHHHHH
T ss_pred CCCCEECCchHHHHHHcCCCCCHHHHHHHHHHHHhCCCcCCeeecCCCHHHHHHHHHHHhcCCCcCCcccCCHHHHHHHH
Confidence 4567999999999875 5679999999999999999999999999999999999999998753 4445678999999999
Q ss_pred hhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCCCCccchhhhc
Q 002837 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (875)
Q Consensus 239 K~fLReLPePLLp~~ly~~~i~~~~~~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~F 318 (875)
|.|||+||+||||+++|+.|+.+.+..+.++++..++. ++.+||+.|+.+|+||+.||++|+.|++.|+|++.|||+||
T Consensus 96 K~fLReLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~-ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf 174 (228)
T 3kuq_A 96 KQYFRDLPEPLMTNKLSETFLQIYQYVPKDQRLQAIKA-AIMLLPDENREVLQTLLYFLSDVTAAVKENQMTPTNLAVCL 174 (228)
T ss_dssp HHHHHHSSSCTTCSSHHHHHHHHHHHSCGGGHHHHHHH-HHHTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHH
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHHHHHhccccCCchhHhHHHH
Confidence 99999999999999999999999998888899999998 45699999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCccccccc--CCCchHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 002837 319 APLLLRPLLAGECELEDDFDM--NGDNSAQLLAAANAANNAQAIIATLLEEYENI 371 (875)
Q Consensus 319 aP~LLrp~~~~~~~led~~~~--~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~I 371 (875)
||+|||++...... .++..+ +..........+.....+..+|.+||+||+.|
T Consensus 175 ~P~Ll~~~~~~~~s-~~~~~~~r~~~~~~~~~~~l~e~~aa~~~l~~mi~~~~~l 228 (228)
T 3kuq_A 175 APSLFHLNTLKREN-SSPRVMQRKQSLGKPDQKDLNENLAATQGLAHMIAECKKL 228 (228)
T ss_dssp HHHHHTCCCC--------------------CHHHHHHHHHHHHHHHHHHHC----
T ss_pred hhhhcCCCCCCCCC-CCcchhhhccccCCCcHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999987542211 111100 00000111122334445678999999999875
No 12
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens}
Probab=100.00 E-value=1.2e-36 Score=312.69 Aligned_cols=191 Identities=17% Similarity=0.241 Sum_probs=165.8
Q ss_pred cchHHHhhh-cCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcCCC-CCCCC-CCcchhhhhhhhhhcc
Q 002837 168 RPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSAD-EDAHVIGDCVKHVLRE 244 (875)
Q Consensus 168 vpL~~ll~~-~~~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G~~-~~~~~-~D~h~VAslLK~fLRe 244 (875)
..|.+++.. ...||.+|.+|+.||+++|+.+|||||++|+..+|+.+++.|++|.. ..... .|+|+||++||.|||+
T Consensus 4 g~L~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~~~~~~~~~~~~~~d~h~va~lLK~flre 83 (201)
T 2ovj_A 4 GMLADFVSQTSPMIPSIVVHCVNEIEQRGLTETGLYRISGCDRTVKELKEKFLRVKTVPLLSKVDDIHAICSLLKDFLRN 83 (201)
T ss_dssp CCGGGGCCSSSSCCCHHHHHHHHHHHHHTTTSTTTTTSCCCHHHHHHHHHHHHTTCSCCCGGGCCCHHHHHHHHHHHHHT
T ss_pred CcHHHHhcccCCCCChHHHHHHHHHHHhCCCcCceeeeCCcHHHHHHHHHHHHcCCCCccccccCCHHHHHHHHHHHHHh
Confidence 456666654 56799999999999999999999999999999999999999999953 33334 4999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCCCCccchhhhccccccC
Q 002837 245 LPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLR 324 (875)
Q Consensus 245 LPePLLp~~ly~~~i~~~~~~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~FaP~LLr 324 (875)
||+||||+++|+.|+.+.+..+.++++..++. ++.+||++|+.+|+||+.||++|+.+ +.|||++.|||+||||+|||
T Consensus 84 LpePLi~~~l~~~~~~~~~~~~~~~~~~~l~~-ll~~LP~~n~~~L~~L~~~L~~V~~~-~~NkM~~~NLa~vf~P~ll~ 161 (201)
T 2ovj_A 84 LKEPLLTFRLNRAFMEAAEITDEDNSIAAMYQ-AVGELPQANRDTLAFLMIHLQRVAQS-PHTKMDVANLAKVFGPTIVA 161 (201)
T ss_dssp SSSCTTCTTTHHHHHHHHHCSSHHHHHHHHHH-HHHTSCHHHHHHHHHHHHHHHHHHHC-TTSCCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHcc-cccCCCHHHHHHHhhhhhcC
Confidence 99999999999999999999999999999998 55799999999999999999999997 68999999999999999999
Q ss_pred CCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCc
Q 002837 325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDE 375 (875)
Q Consensus 325 p~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~~ 375 (875)
++..+. +. .+.+......+.+|++||+||+.||+.-
T Consensus 162 ~~~~~~------------~~---~~~~~~~~~~~~vv~~LI~~~~~if~~f 197 (201)
T 2ovj_A 162 HAVPNP------------DP---VTMLQDIKRQPKVVERLLSLPLEYWSQF 197 (201)
T ss_dssp CSSSSC------------CH---HHHHHHHHHHHHHHHHHHHSCHHHHHGG
T ss_pred CCCCCC------------CH---HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 863211 01 2234455677899999999999999863
No 13
>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens}
Probab=100.00 E-value=3e-36 Score=323.37 Aligned_cols=200 Identities=22% Similarity=0.300 Sum_probs=157.7
Q ss_pred CCCCCcccccchHHHhhh----cCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcCCCCCCCCCCcchh
Q 002837 159 RPVKSLVVGRPILLALED----IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVI 234 (875)
Q Consensus 159 ~~~k~~VFGvpL~~ll~~----~~~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G~~~~~~~~D~h~V 234 (875)
.+.++.+||+||..++.. .+.||.+|.+|+.||++ |+.+|||||++|+...|+.|++.||.|... ....|+|+|
T Consensus 58 ~~~~~~vFGv~L~~l~~~~~~~~~~iP~~l~~~~~~le~-gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~-~~~~~~~~v 135 (271)
T 3eap_A 58 TEIGGKIFGVPFNALPHSAVPEYGHIPSFLVDACTSLED-HIHTEGLFRKSGSVIRLKALKNKVDHGEGC-LSSAPPCDI 135 (271)
T ss_dssp ---CCSSTTSCGGGSCEEEETTTEEEEHHHHHHHHHHGG-GTTC--------CHHHHHHHHHHHHHC------CCCHHHH
T ss_pred CCCCCCeeCCcHHHHHhhccCCCCCcChHHHHHHHHHHh-CCCCCCeeeeCCCHHHHHHHHHHHHcCCCC-cccccHHHH
Confidence 445678999999998753 34699999999999985 799999999999999999999999999754 346899999
Q ss_pred hhhhhhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCCCCccch
Q 002837 235 GDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAV 314 (875)
Q Consensus 235 AslLK~fLReLPePLLp~~ly~~~i~~~~~~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NL 314 (875)
|++||.|||+||+||||+++|+.|+.+.+.. .++++..++. ++..||++|+.+|+||+.||++|+.+++.|||++.||
T Consensus 136 a~lLK~fLReLPePLl~~~ly~~~~~~~~~~-~~~~~~~~~~-l~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NL 213 (271)
T 3eap_A 136 AGLLKQFFRELPEPILPADLHEALLKAQQLG-TEEKNKATLL-LSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNL 213 (271)
T ss_dssp HHHHHHHHHHSSSCSSCGGGHHHHHHHTTSC-HHHHHHHHHH-HHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHH
T ss_pred HHHHHHHHHhCCcccCCHHHHHHHHHHHHHh-HHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHHHHHhcccCCCCHHHH
Confidence 9999999999999999999999999998875 4667888886 6679999999999999999999999999999999999
Q ss_pred hhhccccccCCCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCcc
Q 002837 315 AACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (875)
Q Consensus 315 Ai~FaP~LLrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~~~ 376 (875)
|+||||+|||++.... .+. .. ........+.+|++||+||+.||..+.
T Consensus 214 Aivf~P~Ll~~~~~~~-~~~----------~~---~~~~~~~~~~vve~LI~~~~~IF~vp~ 261 (271)
T 3eap_A 214 AVIFAPNLLQTSEGHE-KMS----------SN---TEKKLRLQAAVVQTLIDYASDIGRVPD 261 (271)
T ss_dssp HHHHHHHHHTCCCCCT-TCC----------HH---HHHHHHHHHHHHHHHHHTGGGTTCCCH
T ss_pred HHHHHhHhccCCCCcc-chh----------hh---HHHHHHHHHHHHHHHHHhHHHHhCCCH
Confidence 9999999999873211 111 11 112234557899999999999997654
No 14
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=100.00 E-value=6.2e-35 Score=334.84 Aligned_cols=192 Identities=18% Similarity=0.319 Sum_probs=169.9
Q ss_pred CcccccchHHHhhh-cCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcCC--CCCC--CCCCcchhhhh
Q 002837 163 SLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK--TEFS--ADEDAHVIGDC 237 (875)
Q Consensus 163 ~~VFGvpL~~ll~~-~~~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G~--~~~~--~~~D~h~VAsl 237 (875)
..+||++|..++.. ...||.+|.+|+.||+++|+.+|||||++|+...|++|+..||.+. .++. ...|+|+||++
T Consensus 267 ~~vFG~~L~~~~~~~~~~vP~iv~~~i~~le~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~dv~~va~l 346 (463)
T 3cxl_A 267 KKVYSCDLTTLVKAHTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGA 346 (463)
T ss_dssp CCCTTSCHHHHHHHHTCSSCHHHHHHHHHHHHHCSCSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHHHHHHH
T ss_pred ccccccccchhhhccCCCCCeeHHHHHHHHHhcCCCCCceeEecCCHHHHHHHHHHHHhcCCcCCcccccCCCcchhhhH
Confidence 57999999999975 5679999999999999999999999999999999999999999853 2332 24699999999
Q ss_pred hhhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCCCCccchhhh
Q 002837 238 VKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAAC 317 (875)
Q Consensus 238 LK~fLReLPePLLp~~ly~~~i~~~~~~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~ 317 (875)
||.|||+||+||||+++|+.|+.+....+.++++..++.+ +..||++|+.||+||+.||++|+.+++.|||++.|||+|
T Consensus 347 LK~flReLPePLi~~~ly~~~~~~~~~~~~~~~~~~l~~l-l~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAiv 425 (463)
T 3cxl_A 347 LKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEA-LKLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIV 425 (463)
T ss_dssp HHHHHHHCSSCSSCTTTHHHHHHHHHCCCHHHHHHHHHHH-HHHSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHH
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHH
Confidence 9999999999999999999999999999999999999985 579999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 002837 318 MAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (875)
Q Consensus 318 FaP~LLrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF 372 (875)
|||+||+++..+... .+......+.+|++||+||+.||
T Consensus 426 f~P~Ll~~~~~~~~~-----------------~~~~~~~~~~vve~LI~~~~~iF 463 (463)
T 3cxl_A 426 FGPTLMRSPELDAMA-----------------ALNDIRYQRLVVELLIKNEDILF 463 (463)
T ss_dssp HHHHHCCCCCSCTTG-----------------GGGGHHHHHHHHHHHHHTHHHHC
T ss_pred hhccccCCCCccHHH-----------------HHHHHHHHHHHHHHHHhchhhcC
Confidence 999999987432110 11223456789999999999998
No 15
>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens}
Probab=100.00 E-value=4.3e-36 Score=311.77 Aligned_cols=192 Identities=18% Similarity=0.157 Sum_probs=141.7
Q ss_pred CCcccccchHHHhhh---cCCCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcCCCCCCCCCCcchhhhhh
Q 002837 162 KSLVVGRPILLALED---IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCV 238 (875)
Q Consensus 162 k~~VFGvpL~~ll~~---~~~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G~~~~~~~~D~h~VAslL 238 (875)
..++||+||..++++ .+.||.+|.+|+.||+++|+.+|||||++|+. +++ .+........|+|+||++|
T Consensus 19 ~~~vFGv~L~~l~~~~~~~~~vP~iv~~~i~~l~~~Gl~~eGIfR~sG~~-----lr~---~~~~~dl~~~dvh~va~lL 90 (214)
T 2xs6_A 19 YFQSMGLTLPDLPEQFSPPDVAPPLLVKLVEAIERTGLDSESHYRPELPA-----PRT---DWSLSDVDQWDTAALADGI 90 (214)
T ss_dssp ------CCCCCHHHHCCTTCCSCHHHHHHHHHHHHHCTTCSGGGCCSCCC-----CCC---CCCCTTGGGCCHHHHHHHH
T ss_pred CCcccCcCHHHHHHhhCCCCCCCHHHHHHHHHHHHhCCCCCCCeeeCHHH-----HHh---ccccCCCccCCHHHHHHHH
Confidence 357999999999883 35799999999999999999999999999999 333 2222333468999999999
Q ss_pred hhhhccCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCCCCccchhhhc
Q 002837 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (875)
Q Consensus 239 K~fLReLPePLLp~~ly~~~i~~~~~~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~F 318 (875)
|.|||+||+||||+++|+.|+.+.+..+..+++. . ++..||+.|+.+|+||+.||++|+.+++.|||++.|||+||
T Consensus 91 K~flReLPePLi~~~ly~~~i~~~~~~~~~~~~~---~-l~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf 166 (214)
T 2xs6_A 91 KSFLLALPAPLVTPEASAEARRALREAAGPVGPA---L-EPPTLPLHRALTLRFLLQHLGRVARRAPALGPAVRALGATF 166 (214)
T ss_dssp HHHHHHSSSCSSCHHHHHHHHHHHHCC--CCGGG---G-STTTSCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHH---H-HHHHCCHHHHHHHHHHHHHHHHHHHcccccCCCHHHHHHHH
Confidence 9999999999999999999999998766554444 3 66899999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHhhccccCCCcc
Q 002837 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (875)
Q Consensus 319 aP~LLrp~~~~~~~led~~~~~g~~s~q~~~a~~~~~~~~~iVe~LIeny~~IF~~~~ 376 (875)
||+|||++..... . .......+.+......+.+|++||+| .||+.+.
T Consensus 167 ~P~Ll~~~~~~~~---~------~~~~~~~~~~~d~~~~~~vve~LI~n--~ife~d~ 213 (214)
T 2xs6_A 167 GPLLLRAPPPPSS---P------PPGGAPDGSEPSPDFPALLVEKLLQE--HLEEQEV 213 (214)
T ss_dssp HHHHHC---------------------------CCTTHHHHHHHHHHHH--HHHC---
T ss_pred hhhhcCCcccccc---c------ccccchhhhHHhHHHHHHHHHHHHhh--hccccCC
Confidence 9999998842100 0 00000011122345568999999976 4777653
No 16
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=99.97 E-value=3.8e-31 Score=295.05 Aligned_cols=141 Identities=16% Similarity=0.249 Sum_probs=129.8
Q ss_pred CCcHHHHHHHHHHHhcCCcccCccccCCCHHHHHHHHHHHhcCCCCCCCCCCcchhhhhhhhhhccCCCCCCChhhHHHH
Q 002837 179 GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKHVLRELPSSPVPASCCTAL 258 (875)
Q Consensus 179 ~VP~iL~~~i~~Le~~Gl~~EGIFRisG~~~~V~~L~~~ld~G~~~~~~~~D~h~VAslLK~fLReLPePLLp~~ly~~~ 258 (875)
.||.+|.+|+.||+++|+.+|||||++|+..+++.|+..|+.|..... ..|+|+||++||.|||+||+||||+++|+.|
T Consensus 198 ~iP~~v~~~i~~l~~~Gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~-~~dvh~va~lLK~fLReLPePLi~~~ly~~~ 276 (366)
T 3qis_A 198 QVPKEIWLLVDHLFKYACHQEDLFQTPGMQEELQQIIDCLDTSIPETI-PGSNHSVAEALLIFLEALPEPVICYELYQRC 276 (366)
T ss_dssp SSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHHCCCSSC-CSCHHHHHHHHHHHHHHCSSCSSCHHHHHHH
T ss_pred CcChHHHHHHHHHHhcCCCCCCeEeCCCCHHHHHHHHHHHcCCCCCcc-ccCHHHHHHHHHHHHHhCCCCCCcHHHHHHH
Confidence 589999999999999999999999999999999999999999975433 3499999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHhcCcCCCCCCccchhhhccccccCCCC
Q 002837 259 LEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLL 327 (875)
Q Consensus 259 i~~~~~~~~eeri~~l~~lLl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NKMta~NLAi~FaP~LLrp~~ 327 (875)
+.+.... ..++. ++..||++|+.+|.||+.||++|+.|++.|+|++.|||+||||+|||++.
T Consensus 277 ~~~~~~~------~~~~~-ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA~vf~P~Llr~~~ 338 (366)
T 3qis_A 277 LDSAYDP------RICRQ-VISQLPRCHRNVFRYLMAFLRELLKFSEYNSVNANMIATLFTSLLLRPPP 338 (366)
T ss_dssp HHHTTCH------HHHHH-HHHTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHHHHHHHSCCCC
T ss_pred HHHhhhH------HHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHhhhcccCCC
Confidence 9997642 34666 55799999999999999999999999999999999999999999999984
No 17
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.68 E-value=2.5e-16 Score=154.68 Aligned_cols=95 Identities=20% Similarity=0.329 Sum_probs=73.4
Q ss_pred CceEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCccee---eccCCceeEEE
Q 002837 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV---VREDKKLLTVL 93 (875)
Q Consensus 17 ~~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~---~~~~Kk~~fiI 93 (875)
..++|+|||+ |+|...+.|++|||||+++.|+||+++.+.. +.+.|+|..+..+. ....+.++|.|
T Consensus 16 ~pv~keG~L~--Kkg~~~k~WkrRWFvLk~~~L~Yyk~~~d~~---------~~g~I~L~~~~~~~~~~~~~~~~~~F~I 84 (149)
T 1x1f_A 16 LPLYFEGFLL--IKRSGYREYEHYWTELRGTTLFFYTDKKSII---------YVDKLDIVDLTCLTEQNSTEKNCAKFTL 84 (149)
T ss_dssp SCEEEEEEEE--EECTTCCSCEEEEEEEETTEEEEESCSSCSS---------CSEECCCSSCCEEEECCCTTSCCCEEEE
T ss_pred CCccEEEEEE--EeCCCCCCceeEEEEEcCCEEEEEeCCCccc---------cCcEEECCCceEEeeccCCCCcCcEEEE
Confidence 3399999777 6777789999999999999999999998775 23345555543321 11234578877
Q ss_pred EcCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002837 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (875)
Q Consensus 94 t~~~~~gRty~LqAdTeeE~~eWv~AI~~al~ 125 (875)
... .++|+|+|+|.+|+++||.||+.++.
T Consensus 85 ~t~---~r~~~f~A~s~ee~~eWi~aI~~v~~ 113 (149)
T 1x1f_A 85 VLP---KEEVQLKTENTESGEEWRGFILTVTE 113 (149)
T ss_dssp ECS---SCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred EcC---CCEEEEEcCCHHHHHHHHHHHHHHHc
Confidence 643 48999999999999999999999876
No 18
>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.68 E-value=1.7e-16 Score=151.08 Aligned_cols=102 Identities=26% Similarity=0.422 Sum_probs=75.0
Q ss_pred CceEEEeeeeeeccCC-CCCCcEEEEEEEeCCeeeEec----CCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeE
Q 002837 17 NTVFKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFK----NDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLT 91 (875)
Q Consensus 17 ~~V~KeG~L~l~KkG~-~~ksWKKRWFVL~~~~L~YYK----d~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~f 91 (875)
.+..++|||| |+|. .+|.||||||||+++.|+||+ ++.+..|. ..|.|.++.+..+........++++|
T Consensus 6 ~n~~~~G~L~--KqG~~~~K~WKrRwFVL~~~~LyYfk~~~~~~~~~~p~----G~I~L~g~tV~~~~~~~~~~~~k~~F 79 (126)
T 1wi1_A 6 SGMKHSGYLW--AIGKNVWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQ----ELLQLDGYTVDYTDPQPGLEGGRAFF 79 (126)
T ss_dssp CCEEEEEEEE--EECSSSCCSCEEEEEEEEEEETTEEEEEECCSSSSCCS----EEEECSSCEEEECCCCSSCCSCSSEE
T ss_pred CCCceeEEEE--EeCCCcccccceEEEEEeCCEEEEEEcccccccCCCCc----eEEECCCcEEEEecCCcccccCceEE
Confidence 3579999887 5554 579999999999999999999 77765532 23456655544321111123577888
Q ss_pred EEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHhhC
Q 002837 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (875)
Q Consensus 92 iIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~~a 127 (875)
.+... +++|+|+|++++||..||.||..|+.++
T Consensus 80 ~~v~~---~~ty~~~Adseee~~~WikAi~~A~~~~ 112 (126)
T 1wi1_A 80 NAVKE---GDTVIFASDDEQDRILWVQAMYRATGQS 112 (126)
T ss_dssp EEECS---SCEEEEECSSHHHHHHHHHHHHHHHTCS
T ss_pred EEecC---CceEEEEcCCHHHHHHHHHHHHHHhccc
Confidence 76543 5789999999999999999999998643
No 19
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.67 E-value=2.4e-16 Score=151.21 Aligned_cols=103 Identities=23% Similarity=0.346 Sum_probs=74.4
Q ss_pred CCCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEEEE
Q 002837 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLF 94 (875)
Q Consensus 15 ~s~~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiIt 94 (875)
.+..|+++|||+ |+| ..+.|++|||||+++.|+||+++.+..| ...|+|.++.+... ....+++||.|.
T Consensus 4 ~~~~v~k~GwL~--K~g-~~k~WkrRWfVLk~~~L~yyk~~~~~~p----~G~I~L~~~~v~~~----~~~~~~~~F~i~ 72 (130)
T 1v88_A 4 GSSGIVMADWLK--IRG-TLKSWTKLWCVLKPGVLLIYKTQKNGQW----VGTVLLNACEIIER----PSKKDGFCFKLF 72 (130)
T ss_dssp SSSSCCEEEEEE--ECC-SSSSCEEEEEEEETTEEEEESCSSSCCC----CEEEECSSCEECCC----CTTTSSCEEEEE
T ss_pred CCCceEEEeEEE--EeC-CCCCceEEEEEEECCEEEEECCCCCCCc----eEEEEcCCCEEEEC----CCCCCCeEEEEE
Confidence 356789999877 566 6889999999999999999999887542 22344444444221 123445899886
Q ss_pred cCCCC---------------------CceEEEEeCCHHHHHHHHHHHHHHHhhCC
Q 002837 95 PDGRD---------------------GRAFTLKAETSEDLYEWKTALELALAQAP 128 (875)
Q Consensus 95 ~~~~~---------------------gRty~LqAdTeeE~~eWv~AI~~al~~aP 128 (875)
..... .++|+|+|+|++|+++||.||+.|+...|
T Consensus 73 ~~~~~~i~~~~g~~~~~~g~~~~~~~~~~~~f~A~s~~e~~~Wi~ai~~a~~~~~ 127 (130)
T 1v88_A 73 HPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALELALKSGP 127 (130)
T ss_dssp CTTCCCCSCSSCTTSCSCSCCCSCCCSSCCEEECSSHHHHHHHHHHHHHHHTTTT
T ss_pred cCCccccccccCCcccccccccccCCceEEEEECCCHHHHHHHHHHHHHHHhcCC
Confidence 32210 24599999999999999999999987443
No 20
>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A
Probab=99.65 E-value=6.5e-16 Score=145.96 Aligned_cols=100 Identities=29% Similarity=0.424 Sum_probs=77.1
Q ss_pred ceEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEEEEcCC
Q 002837 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDG 97 (875)
Q Consensus 18 ~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiIt~~~ 97 (875)
.|+|+|||++...|..+..||+|||||++.+|+|||+..+.. +...|+|.++.+..+..- ...++++|.|++.+
T Consensus 11 ~VirkGWL~k~~~g~~k~~wk~rWFVLt~~~L~yyKd~~eke----~~G~IpL~~~~vr~v~~~--~~~rk~~F~l~~~d 84 (125)
T 1dyn_A 11 LVIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKE----KKYMLSVDNLKLRDVEKG--FMSSKHIFALFNTE 84 (125)
T ss_dssp CEEEEEEEEESCCCGGGTSSEEEEEEEESSEEEEESSTTCSC----EEEEEECTTEEEEECCSC--SSSSCEEEEEEETT
T ss_pred ceEEEEEEEEecCccccCCceeeEEEEeccceeeecCCcccc----cceEEECCCceEeccCCC--CCCCceEEEEECCC
Confidence 399999888544454344599999999999999999998875 344678888887764431 12678999887532
Q ss_pred -C----CCceEEEEeCCHHHHHHHHHHHHHH
Q 002837 98 -R----DGRAFTLKAETSEDLYEWKTALELA 123 (875)
Q Consensus 98 -~----~gRty~LqAdTeeE~~eWv~AI~~a 123 (875)
. +.++|.|.|+|++|+++|+++|..|
T Consensus 85 ~r~v~~~h~~y~LsA~t~ee~~~Wi~s~~ra 115 (125)
T 1dyn_A 85 QRNVYKDYRQLELACETQEEVDSWKASFLRA 115 (125)
T ss_dssp SSCSSTTCSSEEEEESSHHHHHHHHHHHHHT
T ss_pred CccccccceEEEEeCCCHHHHHHHHHHHHhC
Confidence 2 4569999999999999999999655
No 21
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.1e-15 Score=142.02 Aligned_cols=100 Identities=20% Similarity=0.265 Sum_probs=74.1
Q ss_pred CCCCCceEEEeeeeeeccCCC-CCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeE
Q 002837 13 PGASNTVFKSGPLFISSKGIG-WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLT 91 (875)
Q Consensus 13 ~~~s~~V~KeG~L~l~KkG~~-~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~f 91 (875)
+.....++++|||+ |+|.. ++.|++|||||+++.|+||+++... +.++|.+..+. +....+++++|
T Consensus 4 ~~~~~~~~~~G~L~--K~~~~~~k~WkkR~fvL~~~~L~yyk~~~~~----------~~~~i~l~~~~-v~~~~~~~~~F 70 (114)
T 2da0_A 4 GSSGYGSEKKGYLL--KKSDGIRKVWQRRKCSVKNGILTISHATSNR----------QPAKLNLLTCQ-VKPNAEDKKSF 70 (114)
T ss_dssp SCCCCCSCEEEEEE--EECSSSCCCEEEEEEEEETTEEEECCSSCCS----------CCEEEETTTSE-EEECSSSSSCE
T ss_pred CCCCCCccEEEEEE--EeCCCCCCCceeEEEEEeCCEEEEEcCCCCC----------CCCEEEeeeeE-EEECCCCCCEE
Confidence 34456689999887 44443 4899999999999999999996653 22233333322 22344567788
Q ss_pred EEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHhhCC
Q 002837 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAP 128 (875)
Q Consensus 92 iIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~~aP 128 (875)
.|... +++|+|+|+|++|+.+||.+|+.++..+-
T Consensus 71 ~I~~~---~r~~~l~a~s~~e~~~Wi~al~~~~~~~~ 104 (114)
T 2da0_A 71 DLISH---NRTYHFQAEDEQDYVAWISVLTNSKEEAL 104 (114)
T ss_dssp EEEET---TEEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred EEEcC---CcEEEEEcCCHHHHHHHHHHHHHHHHHHH
Confidence 88643 59999999999999999999999987543
No 22
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}
Probab=99.62 E-value=5.3e-16 Score=138.75 Aligned_cols=92 Identities=18% Similarity=0.320 Sum_probs=70.1
Q ss_pred eEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEEEEcCCC
Q 002837 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGR 98 (875)
Q Consensus 19 V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiIt~~~~ 98 (875)
|.|+|||+ |+|...+.|++|||||+++.|+||+++.+.... +.+.|+|..+. +......+++|.|...
T Consensus 1 V~k~G~L~--K~g~~~k~WkkR~FvL~~~~L~Yy~~~~~~~~~-------~~~~i~l~~~~-~~~~~~~~~~F~i~~~-- 68 (94)
T 2rsg_A 1 VERCGVLS--KWTNYIHGWQDRWVVLKNNALSYYKSEDETEYG-------CRGSICLSKAV-ITPHDFDECRFDISVN-- 68 (94)
T ss_dssp CCEEEEEE--EESSSTTCEEEEEEEEETTEEEEESSTTGGGTC-------CSEEEETTTCE-EEECSSCSSEEEEEET--
T ss_pred CCEEEEEE--EeCCCCCCceEEEEEEECCEEEEEEeccccccc-------ceeeEecceee-eecCcccceeEEEEeC--
Confidence 67999777 778888999999999999999999987765321 22334444432 2233455677877653
Q ss_pred CCceEEEEeCCHHHHHHHHHHHHHH
Q 002837 99 DGRAFTLKAETSEDLYEWKTALELA 123 (875)
Q Consensus 99 ~gRty~LqAdTeeE~~eWv~AI~~a 123 (875)
+++|+|+|+|++|+++|+.||++|
T Consensus 69 -~r~~~l~A~s~~e~~~Wi~aLq~A 92 (94)
T 2rsg_A 69 -DSVWYLRAQDPDHRQQWIDAIEQH 92 (94)
T ss_dssp -TEEEEEECCSSCCTHHHHHHHHHH
T ss_pred -CeEEEEECCCHHHHHHHHHHHHhh
Confidence 599999999999999999999987
No 23
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=99.62 E-value=1.5e-15 Score=139.22 Aligned_cols=101 Identities=17% Similarity=0.268 Sum_probs=73.8
Q ss_pred CCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEEEEc
Q 002837 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFP 95 (875)
Q Consensus 16 s~~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiIt~ 95 (875)
+..++++|||+ |+|...+.|++|||||+++.|+||+++.+..+. ..++|.++.+.... ....++++|.|..
T Consensus 5 ~~~~~~~G~L~--K~~~~~~~Wk~RwfvL~~~~L~yyk~~~~~~~~----~~i~L~~~~~~~~~---~~~~~~~~F~i~~ 75 (109)
T 1wgq_A 5 SSGSTMSGYLY--RSKGSKKPWKHLWFVIKNKVLYTYAASEDVAAL----ESQPLLGFTVTLVK---DENSESKVFQLLH 75 (109)
T ss_dssp CCSCSCEEEEE--EESSTTSCCEEEEEEEETTEEEEESCTTCSSCS----EEEECSSEEEEECC---CSSCSSSEEEEEE
T ss_pred CCCCeEEEEEE--eCCCCCCCceeEEEEEeCCEEEEECCCCcCccC----ceEECCCCEEEECC---CCCCCCcEEEEEe
Confidence 45578999887 556668999999999999999999998776422 23344443332211 1223557888763
Q ss_pred CCCCCceEEEEeCCHHHHHHHHHHHHHHHhhC
Q 002837 96 DGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (875)
Q Consensus 96 ~~~~gRty~LqAdTeeE~~eWv~AI~~al~~a 127 (875)
.++++|+|+|+|++|+..|+.+|+.++...
T Consensus 76 --~~~~~~~~~a~s~~e~~~Wi~al~~a~~~~ 105 (109)
T 1wgq_A 76 --KGMVFYVFKADDAHSTQRWIDAFQEGTVSG 105 (109)
T ss_dssp --TTEEEEEEECSSHHHHHHHHHHHHHHHSCC
T ss_pred --CCCeEEEEECCCHHHHHHHHHHHHHHhccC
Confidence 345889999999999999999999998643
No 24
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.62 E-value=2.2e-15 Score=139.00 Aligned_cols=107 Identities=23% Similarity=0.409 Sum_probs=77.0
Q ss_pred CCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEEEEc
Q 002837 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFP 95 (875)
Q Consensus 16 s~~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiIt~ 95 (875)
...++++|||+ |+|...+.|++|||||+++.|+||+++.+..+. ..+.|.++.+..... .....++++|.|.+
T Consensus 5 ~~~~~~~G~L~--K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~----g~i~L~~~~v~~~~~-~~~~~~~~~f~i~~ 77 (118)
T 1v89_A 5 SSGPIKMGWLK--KQRSIVKNWQQRYFVLRAQQLYYYKDEEDTKPQ----GCMYLPGCTIKEIAT-NPEEAGKFVFEIIP 77 (118)
T ss_dssp SSCEEEEEEEE--EECSSSSCEEEEEEEEETTEEEEESSSSCCSCS----EEECSTTEEEEEECC-CSSCCCCCEEEEEE
T ss_pred CCCCcEEEEEE--ecCCCCCCccEEEEEEECCEEEEEeCCCCCCce----EEEECCCCEEEEcCc-CcccCCcceEEEEC
Confidence 35689999777 667678899999999999999999998775422 233444443321110 01234577887765
Q ss_pred CC-----CCCceEEEEeCCHHHHHHHHHHHHHHHhhCCc
Q 002837 96 DG-----RDGRAFTLKAETSEDLYEWKTALELALAQAPS 129 (875)
Q Consensus 96 ~~-----~~gRty~LqAdTeeE~~eWv~AI~~al~~aP~ 129 (875)
.. ..+++|+|+|+|.+|+.+|+.+|+.++...|+
T Consensus 78 ~~~~~~~~~~~~~~l~a~s~~e~~~Wi~al~~~~~~~~~ 116 (118)
T 1v89_A 78 ASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAGSGPS 116 (118)
T ss_dssp SCCSSCCSSCCCEEEECSSHHHHHHHHHHHHHHHHCCSC
T ss_pred CccccccCCCcEEEEECCCHHHHHHHHHHHHHHHccCCC
Confidence 21 25699999999999999999999999975543
No 25
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.62 E-value=2.2e-15 Score=138.93 Aligned_cols=98 Identities=18% Similarity=0.310 Sum_probs=75.1
Q ss_pred CceEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCccee---eccCCceeEEE
Q 002837 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV---VREDKKLLTVL 93 (875)
Q Consensus 17 ~~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~---~~~~Kk~~fiI 93 (875)
..++++|||+ |+|...+.|++|||||+++.|+||+++.+.. +.+.|+|..+..+. ....++++|.|
T Consensus 3 ~~~~~~G~L~--K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~---------~~g~i~L~~~~~~~~~~~~~~~~~~F~i 71 (113)
T 1pls_A 3 PKRIREGYLV--KKGSVFNTWKPMWVVLLEDGIEFYKKKSDNS---------PKGMIPLKGSTLTSPCQDFGKRMFVFKI 71 (113)
T ss_dssp CCCSEEEEEE--EESSSSSCCEEEEEEEETTEEEEESSTTCSS---------CSEEEESSSCCEESSCCSSCCSSSEEEE
T ss_pred CCCcEEEEEE--EeCCCCCCceEEEEEEECCEEEEEeCCCCCC---------cceEEEcCCCEEEEecCCCCCCccEEEE
Confidence 4578999776 6677789999999999999999999987654 33345555443321 22456678888
Q ss_pred EcCCCCCceEEEEeCCHHHHHHHHHHHHHHHhhC
Q 002837 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (875)
Q Consensus 94 t~~~~~gRty~LqAdTeeE~~eWv~AI~~al~~a 127 (875)
.. .++++|+|+|+|.+|+.+|+.+|+.++...
T Consensus 72 ~~--~~~r~~~l~a~s~~e~~~Wi~ai~~~~~~~ 103 (113)
T 1pls_A 72 TT--TKQQDHFFQAAFLEERDAWVRDINKAIKCI 103 (113)
T ss_dssp EE--TTTEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred Ec--CCCCEEEEECCCHHHHHHHHHHHHHHHhcc
Confidence 64 236999999999999999999999998743
No 26
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1
Probab=99.62 E-value=1.2e-15 Score=140.83 Aligned_cols=101 Identities=26% Similarity=0.449 Sum_probs=74.7
Q ss_pred CCCceEEEeeeeeeccCCCCCCcEEEEEEEe--CCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceee---------
Q 002837 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILT--RTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV--------- 83 (875)
Q Consensus 15 ~s~~V~KeG~L~l~KkG~~~ksWKKRWFVL~--~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~--------- 83 (875)
....++++|||+ |+|...+.|++|||||+ ++.|+||++..+..+. +.|+|..+..+..
T Consensus 4 ~~~~~~~~G~L~--K~g~~~~~Wk~R~fvL~~~~~~L~yy~~~~~~~~~---------g~i~L~~~~~v~~~~~~~~~~~ 72 (117)
T 1v5u_A 4 GSSGRSYEGILY--KKGAFMKPWKARWFVLDKTKHQLRYYDHRMDTECK---------GVIDLAEVEAVAPGTPTIGAPK 72 (117)
T ss_dssp SCCSSSEEEEEE--ECCCSSSCCEEEEEEEETTTTEEEEESSSSCSSCC---------CEEEGGGEEEEECCCCCTTSCS
T ss_pred CcCCccEEEEEE--ecCCCCCCceeeEEEEECCCCEEEEeecCCCCccc---------eEEEccCcEEEeecCccccccc
Confidence 445689999777 66777899999999999 8899999998775432 2333333222211
Q ss_pred ccCCceeEEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHhhCCc
Q 002837 84 REDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPS 129 (875)
Q Consensus 84 ~~~Kk~~fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~~aP~ 129 (875)
...++++|.|... +++|+|+|+|++|+.+|+.+|+.++...|+
T Consensus 73 ~~~~~~~F~i~~~---~r~~~l~a~s~~e~~~Wi~al~~~i~~~~~ 115 (117)
T 1v5u_A 73 TVDEKAFFDVKTT---RRVYNFCAQDVPSAQQWVDRIQSCLSSGPS 115 (117)
T ss_dssp SSCTTTCEEEEES---SCEEEEECSSHHHHHHHHHHHHTTCCCCCC
T ss_pred cCCCCeEEEEECC---CceEEEECCCHHHHHHHHHHHHHHhccCCC
Confidence 1345578887643 599999999999999999999999875543
No 27
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.61 E-value=4.5e-15 Score=141.38 Aligned_cols=107 Identities=23% Similarity=0.406 Sum_probs=72.3
Q ss_pred CCCceEEEeeeeeeccCCCCCCcEEEEEEE-eCCeeeEecCCCCCCCCCCceeeeeeCceEeCC-Cccee--eccCCcee
Q 002837 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFIL-TRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNN-SGSVV--VREDKKLL 90 (875)
Q Consensus 15 ~s~~V~KeG~L~l~KkG~~~ksWKKRWFVL-~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~-~~sV~--~~~~Kk~~ 90 (875)
.+..|+++|||+ |+|...+.|++||||| +++.|+||+++.+..+.+.....+.+..|.+.. +..+. ....++++
T Consensus 4 ~~~~v~~~G~L~--K~g~~~k~WkkRwFVL~~~~~L~Yyk~~~~~~~~g~i~l~~~~~~i~~~~~~~~v~~~~~~~~~~~ 81 (130)
T 2d9v_A 4 GSSGLVRGGWLW--RQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVVIHFNVRDIKVGQECQDVQPPEGRSRDGL 81 (130)
T ss_dssp SCCCEEEEEEEE--EECSSSCCEEEEEEEEETTTEEEEESSSSTTSEEEEEECTTTEEEEEEGGGCSSCCCCSSCCTTTE
T ss_pred CCCceeEEEEEE--eecCccCCceeeEEEEccCCEEEEEeCCCCCCcCceEecccceeEEeccccccccCCCCCCCcCcE
Confidence 456799999777 6677789999999999 899999999987653211100000011111110 01111 12345678
Q ss_pred EEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002837 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (875)
Q Consensus 91 fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~ 125 (875)
|.|.. .++++|+|+|+|++|+++||.||+.++.
T Consensus 82 F~I~~--~~~r~~~l~A~s~~e~~~Wi~al~~a~~ 114 (130)
T 2d9v_A 82 LTVNL--REGSRLHLCAETRDDAIAWKTALMEANS 114 (130)
T ss_dssp EEEEE--TTSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred EEEEe--CCCCEEEEEcCCHHHHHHHHHHHHHHHc
Confidence 87764 2468999999999999999999999986
No 28
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=99.61 E-value=2.6e-15 Score=143.27 Aligned_cols=103 Identities=19% Similarity=0.251 Sum_probs=71.7
Q ss_pred CCCCceEEEeeeeeeccC-CCCCCcEEEEEEEe---CCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceee-----c
Q 002837 14 GASNTVFKSGPLFISSKG-IGWKSWKKRWFILT---RTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-----R 84 (875)
Q Consensus 14 ~~s~~V~KeG~L~l~KkG-~~~ksWKKRWFVL~---~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~-----~ 84 (875)
.......++|||+ |+| ...+.|+||||||+ +..|+||+++.+. +.. ..++|.|.|..+..|.. .
T Consensus 10 ~~~~~~~~~G~L~--K~g~~~~k~WkrRwFvL~~~~~~~L~Y~k~~~~~-~~~----~~~~G~I~L~~~~~V~~~~~~~~ 82 (126)
T 1v5p_A 10 YVDRQNRICGFLD--IEDNENSGKFLRRYFILDTQANCLLWYMDNPQNL-AVG----AGAVGSLQLTYISKVSIATPKQK 82 (126)
T ss_dssp CCCCCCCEECCEE--EECTTCSSCEEEEEEEEETTTTEEEEESSCTTTS-CTT----CCCSEEEETTTCCEEEECCTTTS
T ss_pred eecCCCceEEEEE--EeCCCCCCCccceEEEEecCCCCEEEEECCCCCC-CCC----ceeeEEEECCCccEEecCCcccC
Confidence 3444456899777 555 45899999999999 6678888884321 011 01455566665444322 2
Q ss_pred cCCceeEEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002837 85 EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (875)
Q Consensus 85 ~~Kk~~fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~~ 126 (875)
..+++||+|.+. .|+|+|+|+|++||++||.||+.++.-
T Consensus 83 ~~~~~~F~i~t~---~r~y~l~A~s~~e~~~Wi~al~~a~~~ 121 (126)
T 1v5p_A 83 PKTPFCFVINAL---SQRYFLQANDQKDLKDWVEALNQASKS 121 (126)
T ss_dssp CSCSSEEEEECS---SCEEEEECSSHHHHHHHHHHHHHTTTT
T ss_pred CCCCEEEEEECC---CEEEEEECCCHHHHHHHHHHHHHHHhc
Confidence 345689977543 599999999999999999999998763
No 29
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.61 E-value=2.9e-15 Score=138.68 Aligned_cols=97 Identities=25% Similarity=0.359 Sum_probs=75.7
Q ss_pred CCCCceEEEeeeeeeccCC-CCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEE
Q 002837 14 GASNTVFKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTV 92 (875)
Q Consensus 14 ~~s~~V~KeG~L~l~KkG~-~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fi 92 (875)
..+..++++|||+ |+|. ..+.|++|||||+++.|+||+++.+.. +.+.|+|..+..|.... +++|.
T Consensus 3 ~~~~~~~~~G~L~--K~~~~~~~~WkkR~fvL~~~~L~yy~~~~~~~---------~~g~i~l~~~~~v~~~~--~~~F~ 69 (115)
T 2cod_A 3 SGSSGKVKSGWLD--KLSPQGKRMFQKRWVKFDGLSISYYNNEKEMY---------SKGIIPLSAISTVRVQG--DNKFE 69 (115)
T ss_dssp CCCSCCCEEEEEE--ECCSSSSSCCEEEEEEECSSEEEEEESSCCSS---------CCCEEETTTEEEEEEET--TTEEE
T ss_pred CCCCCccEEEEEE--EcCCCCCCCCceEEEEEECCEEEEEcCCCCcc---------cCCEEECCcceEEEeCC--CCEEE
Confidence 3456689999777 5665 678999999999999999999988754 34456666554443332 56787
Q ss_pred EEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002837 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (875)
Q Consensus 93 It~~~~~gRty~LqAdTeeE~~eWv~AI~~al~~ 126 (875)
|.. .+++|+|+|++.+|+.+|+.+|+.++..
T Consensus 70 i~~---~~r~~~l~a~s~~e~~~Wi~~l~~~~~~ 100 (115)
T 2cod_A 70 VVT---TQRTFVFRVEKEEERNDWISILLNALKS 100 (115)
T ss_dssp EEE---SSCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred EEe---CCcEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 763 3599999999999999999999999853
No 30
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.61 E-value=4.5e-15 Score=139.78 Aligned_cols=109 Identities=23% Similarity=0.344 Sum_probs=76.9
Q ss_pred CCCCCCCCCCCCCCceEEEeeeeeeccCCCCCCcEEEEEEEe--CCeeeEecCC-CCCCCCCCceeeeeeCceEeCCCcc
Q 002837 4 SLAPFERPRPGASNTVFKSGPLFISSKGIGWKSWKKRWFILT--RTSLVFFKND-PSALPQRGGEVNLTLGGIDLNNSGS 80 (875)
Q Consensus 4 s~~~~~~~~~~~s~~V~KeG~L~l~KkG~~~ksWKKRWFVL~--~~~L~YYKd~-~~~~p~~~~e~~i~Lg~I~L~~~~s 80 (875)
|.++...+.......++++|||+ |+|...+.|++|||||+ ++.|+||+++ .+.. +.+.|+|..+..
T Consensus 3 s~ss~~~~~~~~~~~~~~~G~L~--K~g~~~~~Wk~R~fvL~~d~~~L~yy~~~~~~~~---------~~g~i~L~~~~v 71 (129)
T 1x1g_A 3 SGSSGSLSTVELSGTVVKQGYLA--KQGHKRKNWKVRRFVLRKDPAFLHYYDPSKEENR---------PVGGFSLRGSLV 71 (129)
T ss_dssp CSSCSCSCCCTTCSEEEEEEEEE--EECSSSSSEEEEEEEEEESSCEEEEECSSSCCSS---------CSCCEESTTCCC
T ss_pred CCcccCccccccCCCEEEEEEEE--EECCCCCCeeeEEEEEeCCCCeEEEeCCCCcCCc---------cceEEECcCCEE
Confidence 33343444445667899999777 66767899999999999 4799999986 3333 334455544222
Q ss_pred eeeccC----------CceeEEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002837 81 VVVRED----------KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (875)
Q Consensus 81 V~~~~~----------Kk~~fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~ 125 (875)
...... +.++|.|.. .++++|+|+|+|++|+.+|+.+|+.++.
T Consensus 72 ~~~~~~~~p~~~~~~~~~~~F~I~~--~~~r~~~l~a~s~~e~~~Wi~al~~~~~ 124 (129)
T 1x1g_A 72 SALEDNGVPTGVKGNVQGNLFKVIT--KDDTHYYIQASSKAERAEWIEAIKKLTS 124 (129)
T ss_dssp EECCSSSSCSSCSSCCCSSCEEECC--TTCCCEEECCSSHHHHHHHHHHHHHHSS
T ss_pred EEeCCCCCcccccCCCCCceEEEEc--CCCCEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 111111 467888764 3468899999999999999999999985
No 31
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=4e-15 Score=136.95 Aligned_cols=98 Identities=24% Similarity=0.449 Sum_probs=77.0
Q ss_pred CCCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceee---ccCCceeE
Q 002837 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV---REDKKLLT 91 (875)
Q Consensus 15 ~s~~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~---~~~Kk~~f 91 (875)
.+..++++|||+ |+|...+.|++|||||+++.|+||+++.+.. +.+.|.|..+..|.. ...++++|
T Consensus 4 ~~~~~~~~G~L~--K~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~---------~~g~i~L~~~~~v~~~~~~~~~~~~F 72 (115)
T 2dn6_A 4 GSSGVLKQGYMM--KKGHRRKNWTERWFVLKPNIISYYVSEDLKD---------KKGDILLDENCCVESLPDKDGKKCLF 72 (115)
T ss_dssp CCCSCSEEEEEE--EECTTSSCEEEEEEEECSSCEEEESSTTCSS---------EEEEECCCTTCEEEEECCCTTCCSEE
T ss_pred CCCCceEEEEEE--ecCCCCCCcEEeEEEEECCEEEEeCCCCCcc---------cCcEEEecCcEEEEECCCCCCCeeEE
Confidence 456689999777 6666789999999999999999999877654 455566665444322 23456788
Q ss_pred EEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002837 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (875)
Q Consensus 92 iIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~~ 126 (875)
.|... +++|+|+|+|.+|+.+|+.+|+.++..
T Consensus 73 ~i~~~---~r~~~l~a~s~~e~~~Wi~ai~~~~~~ 104 (115)
T 2dn6_A 73 LVKCF---DKTFEISASDKKKKQEWIQAIHSTIHL 104 (115)
T ss_dssp EEECS---SCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred EEEeC---CCEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 88653 599999999999999999999999864
No 32
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.6e-15 Score=140.66 Aligned_cols=96 Identities=24% Similarity=0.329 Sum_probs=74.6
Q ss_pred CCceEEEeeeeeeccCC--CCCCcEEEEEEEeCC--eeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeE
Q 002837 16 SNTVFKSGPLFISSKGI--GWKSWKKRWFILTRT--SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLT 91 (875)
Q Consensus 16 s~~V~KeG~L~l~KkG~--~~ksWKKRWFVL~~~--~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~f 91 (875)
...+.++|||+ |+|. ..+.|++|||||+++ .|+||++..+.. +.+.|+|..+..+.....++++|
T Consensus 5 ~~~~~~~G~L~--K~g~~~~~k~WkkRwfvL~~~~~~L~Yy~~~~~~~---------~~g~I~L~~~~~~~~~~~~~~~F 73 (119)
T 2dhk_A 5 SSGKKLCGYLS--KFGGKGPIRGWKSRWFFYDERKCQLYYSRTAQDAN---------PLDSIDLSSAVFDCKADAEEGIF 73 (119)
T ss_dssp CSCCCCEEEEE--ECSCSSSSCCCEEEEEEEETTTTEEEEESSTTCCS---------CSEEEEGGGCEEEECTTGGGCEE
T ss_pred CCCCcEEEEEE--ecCCCCCCCCceeEEEEEECCccEEEEECCCCCcc---------cccEEECCCCEEEecCCCCCCEE
Confidence 34568999777 5553 678999999999998 999999988754 34456666554443334556788
Q ss_pred EEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002837 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (875)
Q Consensus 92 iIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~ 125 (875)
.|... +|+|+|+|+|.+|+++||.+|+.++.
T Consensus 74 ~i~~~---~r~~~l~a~s~~e~~~Wi~al~~~~~ 104 (119)
T 2dhk_A 74 EIKTP---SRVITLKAATKQAMLYWLQQLQMKRW 104 (119)
T ss_dssp EEECS---SCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred EEEeC---CcEEEEECCCHHHHHHHHHHHHHHHH
Confidence 87643 69999999999999999999999975
No 33
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Probab=99.60 E-value=7e-15 Score=138.64 Aligned_cols=105 Identities=24% Similarity=0.370 Sum_probs=74.6
Q ss_pred CCCCceEEEeeeeeeccCCCCCCcEEEEEEEeCC--eeeEecCCCCCCCCCCceeeeeeCceEeCCCccee--eccCCce
Q 002837 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRT--SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV--VREDKKL 89 (875)
Q Consensus 14 ~~s~~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~--~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~--~~~~Kk~ 89 (875)
.....++++|||+ |+|...+.|++|||||+++ .|+||++..+..+. ..|.|.+|.+....... ....+++
T Consensus 13 ~~~~~~~~~G~L~--K~g~~~~~Wk~R~fvL~~~~~~L~yy~~~~~~~~~----g~i~L~~~~v~~~~~~~~~~~~~~~~ 86 (129)
T 1x05_A 13 EFRGVIIKQGCLL--KQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPL----GAIHLRGCVVTSVESNSNGRKSEEEN 86 (129)
T ss_dssp TTCSEEEEEEEEE--ECCSSCCCCEEEEEEEEETTTEEEEECSSCCSSCS----EEEECTTCEEEECCCCCCSSSCSSCS
T ss_pred cccCCceEEEEEE--ecCCCCCCCeeEEEEEeCCCCEEEEECCCCCCcce----eEEEccCCEEEEccCCccccccCCCe
Confidence 4567799999777 6777789999999999976 89999987665421 22344333322111100 0113678
Q ss_pred eEEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002837 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (875)
Q Consensus 90 ~fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~~ 126 (875)
+|.|... ++++|+|+|+|.+|+.+|+.+|+.++..
T Consensus 87 ~F~i~~~--~~~~~~l~a~s~~e~~~Wi~al~~~~~~ 121 (129)
T 1x05_A 87 LFEIITA--DEVHYFLQAATPKERTEWIKAIQMASRT 121 (129)
T ss_dssp EEEEECT--TCCCCEEECSSHHHHHHHHHHHHHHHTC
T ss_pred EEEEEcC--CCCEEEEECCCHHHHHHHHHHHHHHHHc
Confidence 8888643 4588999999999999999999999863
No 34
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*
Probab=99.60 E-value=4.4e-15 Score=138.88 Aligned_cols=101 Identities=25% Similarity=0.416 Sum_probs=74.7
Q ss_pred CceEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCccee-eccCCceeEEEEc
Q 002837 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV-VREDKKLLTVLFP 95 (875)
Q Consensus 17 ~~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~-~~~~Kk~~fiIt~ 95 (875)
..++++|||+ |+|...+.|++|||||+++.|+||+++.+.. +.+.|+|..+..+. ....++++|.|..
T Consensus 3 ~~~~~~G~L~--K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~---------~~g~i~L~~~~v~~~~~~~~~~~f~i~~ 71 (127)
T 1fgy_A 3 FNPDREGWLL--KLGGRVKTWKRRWFILTDNCLYYFEYTTDKE---------PRGIIPLENLSIREVLDPRKPNCFELYN 71 (127)
T ss_dssp SSCSEEEEEE--EECSSSCCEEEEEEEEETTEEEEESSTTCSS---------CSEEEECTTCEEEEECCSSCSSEEEEEC
T ss_pred CCCceEeEEE--EECCCCCCeEEEEEEEECCEEEEeCCCCCCC---------cceEEECCceEEEEccCCCCCceEEEec
Confidence 4578999776 6676789999999999999999999887654 23334444432211 1235677887764
Q ss_pred CCC-------------------CCceEEEEeCCHHHHHHHHHHHHHHHhhCC
Q 002837 96 DGR-------------------DGRAFTLKAETSEDLYEWKTALELALAQAP 128 (875)
Q Consensus 96 ~~~-------------------~gRty~LqAdTeeE~~eWv~AI~~al~~aP 128 (875)
... ..++|+|+|+|.+|+.+|+.+|+.++...|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~v~~~~r~~~l~a~s~~e~~~Wi~al~~~i~~~~ 123 (127)
T 1fgy_A 72 PSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISRDP 123 (127)
T ss_dssp SSSTTCCCCCEEECTTSCEEECCCSEEEEECSSHHHHHHHHHHHHHHHHHCT
T ss_pred CCccccccccccccCCcceecCCceEEEEECCCHHHHHHHHHHHHHHhccCC
Confidence 321 247999999999999999999999997554
No 35
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Probab=99.60 E-value=3.4e-15 Score=140.26 Aligned_cols=99 Identities=31% Similarity=0.417 Sum_probs=76.7
Q ss_pred CCCCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceee--ccCCceeE
Q 002837 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV--REDKKLLT 91 (875)
Q Consensus 14 ~~s~~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~--~~~Kk~~f 91 (875)
.....++++|||+ |+|...+.|++|||||+++.|+||+++.+.. +.+.|+|..+..+.. ...++++|
T Consensus 13 ~~~~~~~~~G~L~--K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~---------~~g~i~L~~~~~v~~~~~~~~~~~F 81 (126)
T 1fao_A 13 TAPSLGTKEGYLT--KQGGLVKTWKTRWFTLHRNELKYFKDQMSPE---------PIRILDLTECSAVQFDYSQERVNCF 81 (126)
T ss_dssp --CCTTCEEEEEE--EECSSSCCEEEEEEEEETTEEEEESSTTCSS---------CSEEEEGGGCCEEEEECSSSSSSEE
T ss_pred CCCCCccEEEEEE--EcCCCCCCcccEEEEEECCEEEEeCCCCCCC---------ceeEEEccceEEEEecccCCCCCEE
Confidence 4456789999777 6666789999999999999999999887654 344466655543332 23566888
Q ss_pred EEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002837 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (875)
Q Consensus 92 iIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~~ 126 (875)
.|... +++|+|+|+|.+|+.+|+.+|+.++..
T Consensus 82 ~i~~~---~r~~~l~a~s~~e~~~Wi~al~~~i~~ 113 (126)
T 1fao_A 82 CLVFP---FRTFYLCAKTGVEADEWIKILRWKLSQ 113 (126)
T ss_dssp EEEET---TEEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred EEEeC---CcEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 88653 599999999999999999999999974
No 36
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1
Probab=99.60 E-value=2.9e-15 Score=139.91 Aligned_cols=100 Identities=25% Similarity=0.424 Sum_probs=75.6
Q ss_pred CCCCCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceee-----ccCC
Q 002837 13 PGASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-----REDK 87 (875)
Q Consensus 13 ~~~s~~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~-----~~~K 87 (875)
......++++|||+ |+|...+.|++|||||+++.|+||++..+.. +.+.|.|..+..+.. ...+
T Consensus 8 ~~~~~~~~~~G~L~--K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~---------~~g~i~l~~~~~v~~~~~~~~~~~ 76 (125)
T 1eaz_A 8 PPQDSAVIKAGYCV--KQGAVMKNWKRRYFQLDENTIGYFKSELEKE---------PLRVIPLKEVHKVQECKQSDIMMR 76 (125)
T ss_dssp ----CCCSEEEEEE--EECTTTCCEEEEEEEECSSEEEEESSTTCSS---------CSEEEEGGGCCEEEECTTHHHHTC
T ss_pred CCCCCCccEEEEEE--EeCCCCCCcceEEEEEeCCEEEEEcCCCCCc---------ceeEEEcccceEEeeccccccCCc
Confidence 34457789999777 5677789999999999999999999987654 334455555443322 1356
Q ss_pred ceeEEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002837 88 KLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (875)
Q Consensus 88 k~~fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~~ 126 (875)
.++|.|... +++|+|+|+|++|+.+|+.+|+.++..
T Consensus 77 ~~~F~i~~~---~r~~~l~a~s~~e~~~W~~al~~~i~~ 112 (125)
T 1eaz_A 77 DNLFEIVTT---SRTFYVQADSPEEMHSWIKAVSGAIVA 112 (125)
T ss_dssp SSEEEEECS---SCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeC---CcEEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 778888743 599999999999999999999999874
No 37
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A
Probab=99.60 E-value=6.6e-15 Score=134.26 Aligned_cols=102 Identities=25% Similarity=0.390 Sum_probs=70.9
Q ss_pred CCCceEEEeeeeeeccCCCCCCcEEEEEEEeCC--eeeEecCCCCCCCCCCceeeeeeCceEeCCCccee--eccCCcee
Q 002837 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRT--SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV--VREDKKLL 90 (875)
Q Consensus 15 ~s~~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~--~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~--~~~~Kk~~ 90 (875)
....++++|||+ |+|...+.|++|||||+++ .|+||+++.+..|. ..+.|.++.+....... ....+.++
T Consensus 3 ~~~~~~~~G~L~--K~g~~~~~Wk~R~fvL~~~~~~L~yyk~~~~~~~~----g~i~L~~~~v~~~~~~~~~~~~~~~~~ 76 (109)
T 2i5f_A 3 FTGVIIKQGCLL--KQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPL----GAIHLRGCVVTSVESNSNGRKSEEENL 76 (109)
T ss_dssp CCCCEEEEEEEE--EECTTTCCEEEEEEEEETTTTEEEEECTTSCSSCS----EEEECTTCEEEEECC--------CCSE
T ss_pred ccCceeEEEEEE--EcCCCCCCceEEEEEEeCCCcEEEEECCCCCCCcc----EEEECCCCEEEEccCCcccccCCCceE
Confidence 346799999777 5676788999999999986 99999988665422 12334333222111100 01126678
Q ss_pred EEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 002837 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (875)
Q Consensus 91 fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al 124 (875)
|.|... ++++|+|+|+|.+|+.+|+.+|+.++
T Consensus 77 F~i~~~--~~~~~~l~a~s~~e~~~Wi~ai~~~~ 108 (109)
T 2i5f_A 77 FEIITA--DEVHYFLQAATPKERTEWIKAIQMAS 108 (109)
T ss_dssp EEEECT--TCCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred EEEEeC--CCCEEEEEcCCHHHHHHHHHHHHHHh
Confidence 887643 46889999999999999999999886
No 38
>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A
Probab=99.59 E-value=3.9e-16 Score=147.89 Aligned_cols=108 Identities=14% Similarity=0.247 Sum_probs=72.0
Q ss_pred CCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCC----CCCCCC-ceeeeeeCceEeCCCcceeeccCCcee
Q 002837 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPS----ALPQRG-GEVNLTLGGIDLNNSGSVVVREDKKLL 90 (875)
Q Consensus 16 s~~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~----~~p~~~-~e~~i~Lg~I~L~~~~sV~~~~~Kk~~ 90 (875)
-+.++|+|||+ |+|...+.|++|||||+++.|+||++... ..|.+. ....|+|.+|.+..... ....++++
T Consensus 9 ~~~~~k~G~L~--K~g~~~k~Wk~RwfVL~~~~L~yyk~~~~~~~e~~plg~~~~G~I~L~~~~v~~~~~--~~~~k~~~ 84 (124)
T 2w2x_D 9 KDEHKQQGELY--MWDSIDQKWTRHFCAIADAKLSFSDDIEQTMEEDNPLGSLCRGILDLNTYNVVKAPQ--GKNQKSFV 84 (124)
T ss_dssp ----CCEEEEE--EEETTTTEEEEEEEEEETTEEEEEEEHHHHHHCSSCCCCSCSEEEEGGGEEEEECTT--CBTTBSEE
T ss_pred hhhcceeEEEE--EECCCCCCceEeEEEEECCEEEEEcccccccccccccCCccccEEECCCCEEEEccC--CcCCCCEE
Confidence 35689999887 56667899999999999999999998532 122211 12334444444332111 11357788
Q ss_pred EEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHhhC
Q 002837 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (875)
Q Consensus 91 fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~~a 127 (875)
|.|.......++|+|+|+|.+|+.+||.||+.++..+
T Consensus 85 F~I~~~~~~~~~~~~~A~s~ee~~~Wi~ai~~a~~~~ 121 (124)
T 2w2x_D 85 FILEPKQQGDPPVEFATDKVEELFEWFQSIREITWKI 121 (124)
T ss_dssp EEEEECC--CCCEEEEECCCHHHHHHHHHHHHHHC--
T ss_pred EEEECCCCCCceEEEEECCHHHHHHHHHHHHHHHHhh
Confidence 9887644345789999999999999999999998643
No 39
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}
Probab=99.59 E-value=1.5e-14 Score=143.75 Aligned_cols=119 Identities=15% Similarity=0.201 Sum_probs=81.4
Q ss_pred CCCCCCceEEEeeeeeeccC---CCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCccee------
Q 002837 12 RPGASNTVFKSGPLFISSKG---IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV------ 82 (875)
Q Consensus 12 ~~~~s~~V~KeG~L~l~KkG---~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~------ 82 (875)
...-...++++|||+++.++ ...++||+|||||+++.|+||+++.+... +.|.|+|..+..|.
T Consensus 8 ~~~m~~~~i~EG~L~Kr~~~kk~~~~knWKkRwFVL~~~~L~Yyk~~~~~~~--------~~G~I~L~~~~~v~~~~~~~ 79 (164)
T 2lul_A 8 HSHMNFNTILEEILIKRSQQKKKTSPLNYKERLFVLTKSMLTYYEGRAEKKY--------RKGFIDVSKIKCVEIVKNDD 79 (164)
T ss_dssp CCCCCSSEEEEEEEEEECCCCSSSCCCCEEEEEEEEESSEEEEECCCSSSCC--------CCCEEEGGGCCEEEECCCCS
T ss_pred cccCCCCeeEEEEEEEecCCCCCCCCCCceeEEEEEECCEEEEEeccCcccc--------cccEEEEeeeEEEEeccccc
Confidence 33556789999999865433 23568999999999999999998765432 12234443332221
Q ss_pred --eccCCceeEEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHhhCCcchhccCCcccccC
Q 002837 83 --VREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAALVMGHNGIFRN 142 (875)
Q Consensus 83 --~~~~Kk~~fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~~aP~~a~~~g~~~if~~ 142 (875)
.....+++|.|... .|+|||+|+|++|+++||.||++++...++.. ..-|.|.|..
T Consensus 80 ~~~~~~~~~~f~i~t~---~rt~~l~A~s~~e~~~Wi~aL~~~i~~n~~~~-~~yHpg~~~~ 137 (164)
T 2lul_A 80 GVIPCQNKYPFQVVHD---ANTLYIFAPSPQSRDLWVKKLKEEIKNNNNIM-IKYHPKFWTD 137 (164)
T ss_dssp SSCCSSSCSEEEEECS---SCEEEEECSSHHHHHHHHHHHHHHHTTCSCCC-SEECCSCCCT
T ss_pred cCcccccceeEEEecC---CcEEEEECCCHHHHHHHHHHHHHHHHHChhhh-hhcCCCcccC
Confidence 11245567777643 49999999999999999999999998655432 2235566653
No 40
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.59 E-value=2.2e-15 Score=141.41 Aligned_cols=111 Identities=24% Similarity=0.371 Sum_probs=76.2
Q ss_pred CCCCceEEEeeeeeecc----C--CCCCCcEEEEEEEeCCeeeEecCCCCCCCC--CCceeeeeeCceEeCCCcceeecc
Q 002837 14 GASNTVFKSGPLFISSK----G--IGWKSWKKRWFILTRTSLVFFKNDPSALPQ--RGGEVNLTLGGIDLNNSGSVVVRE 85 (875)
Q Consensus 14 ~~s~~V~KeG~L~l~Kk----G--~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~--~~~e~~i~Lg~I~L~~~~sV~~~~ 85 (875)
++...+.++|||+++.. | ...+.|++|||||+++.|+||+++.+.... ..+...+.+.++.+.... ...
T Consensus 3 ~~~~~v~~eG~L~kk~~~~~~gk~~~~~~Wk~rwfvL~~~~L~yyk~~~~~~~~~~~~~~~~i~l~~~~~~~~~---~~~ 79 (123)
T 1wjm_A 3 SGSSGEQMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPVSLARAQGSVAF---DYR 79 (123)
T ss_dssp SCCCCCCEEEEEEEEEEEEETTEECSCCCCEEEEEEEETTEEEEESSHHHHTTTCBSSSCCCEECTTCEEEECT---TCS
T ss_pred CCCCCeEEEEEEEEEEEEeCCCccCCCCCccEEEEEEECCEEEEEEcccccccCcccCCCceEEccCcEEeecc---ccc
Confidence 34566899998885431 1 127899999999999999999998764310 012223334332221111 124
Q ss_pred CCceeEEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHhhCCc
Q 002837 86 DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPS 129 (875)
Q Consensus 86 ~Kk~~fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~~aP~ 129 (875)
.++++|.|.. .++++|+|+|+|++||++||.+|+.++...|+
T Consensus 80 ~r~~~F~i~~--~~~~~~~f~A~s~~e~~~Wi~ai~~~~~~~~~ 121 (123)
T 1wjm_A 80 KRKHVFKLGL--QDGKEYLFQAKDEAEMSSWLRVVNAAIASGPS 121 (123)
T ss_dssp SCSSEEEEEC--SSSCEEEEECSSHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCEEEEEE--cCCcEEEEECCCHHHHHHHHHHHHHHHhccCC
Confidence 5778898864 34699999999999999999999999975543
No 41
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B
Probab=99.59 E-value=5.9e-15 Score=137.38 Aligned_cols=95 Identities=20% Similarity=0.368 Sum_probs=69.6
Q ss_pred EEeeeeeeccC--CCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcce----eeccCCceeEEEE
Q 002837 21 KSGPLFISSKG--IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSV----VVREDKKLLTVLF 94 (875)
Q Consensus 21 KeG~L~l~KkG--~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV----~~~~~Kk~~fiIt 94 (875)
|+|||+++..+ ...+.|++|||||+++.|+||++..+..| .+.|+|...... .....++++|.|.
T Consensus 2 keG~L~kK~g~~~~~~k~Wk~rwfvL~~~~L~~yk~~~~~~p---------~~~i~l~~~~~~~~~~~~~~~r~~~F~l~ 72 (112)
T 3cxb_B 2 KEGMLHYKAGTSYLGKEHWKTCFVVLSNGILYQYPDRTDVIP---------LLSVNMGGEQCGGCRRANTTDRPHAFQVI 72 (112)
T ss_dssp EEEEEEECCSCCCSSCCCCEEEEEEEETTEEEEESSSSCCSC---------SEEEETTC-CEEEEEECCCSSCTTEEEEE
T ss_pred ceEEEEEeCCCCCCCCCCceEEEEEEECCEEEEECCCCCCCc---------cceEEecCCEEEeeeccCCCCCCeEEEEE
Confidence 79988744222 15789999999999999999999876542 233444432211 1234677899886
Q ss_pred cCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002837 95 PDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (875)
Q Consensus 95 ~~~~~gRty~LqAdTeeE~~eWv~AI~~al~~ 126 (875)
. .++++|+|+|+|+++|++||.+|+.++..
T Consensus 73 ~--~~~~~y~f~A~s~ee~~~Wi~ai~~~~~~ 102 (112)
T 3cxb_B 73 L--SDRPCLELSAESEAEMAEWMQHLCQAVSK 102 (112)
T ss_dssp E--TTSCCEEEECSSHHHHHHHHHHHHHHHTC
T ss_pred c--CCCCEEEEEcCCHHHHHHHHHHHHHHhhc
Confidence 3 24689999999999999999999999863
No 42
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Probab=99.59 E-value=3.3e-15 Score=142.58 Aligned_cols=109 Identities=27% Similarity=0.456 Sum_probs=73.7
Q ss_pred CCCCceEEEeeeeeec---cCC-CCCCcEEEEEEEeCCeeeEecCCCCCCC-------CCCceeeeeeCceEeCCCccee
Q 002837 14 GASNTVFKSGPLFISS---KGI-GWKSWKKRWFILTRTSLVFFKNDPSALP-------QRGGEVNLTLGGIDLNNSGSVV 82 (875)
Q Consensus 14 ~~s~~V~KeG~L~l~K---kG~-~~ksWKKRWFVL~~~~L~YYKd~~~~~p-------~~~~e~~i~Lg~I~L~~~~sV~ 82 (875)
..+..+.|+|||++++ .|. .+++|++|||||+++.|+|||+...... ...+...|+|.++.+... .
T Consensus 7 ~~~~~~~k~G~L~kk~~~~~G~~~~k~Wk~rwfvL~~~~L~yykd~~~~~~~~~~~~~~~~p~g~I~L~~~~v~~~---~ 83 (129)
T 2p0d_A 7 VGSHEVEKSGLLNMTKIAQGGRKLRKNWGPSWVVLTGNSLVFYREPPPTAPSSGWGPAGSRPESSVDLRGAALAHG---R 83 (129)
T ss_dssp --CCSEEEEEEEEEEEEEETTEECCCCCEEEEEEEESSEEEEESCC--------------CCSEEEECTTCEEEEC---T
T ss_pred CCCcceeEEEEEEEeeeccCCCcCCCCceEEEEEEeCCEEEEEcCcccccccccccccCCCCccEEEeCCcEEEEC---C
Confidence 3456899999998642 242 2489999999999999999999853211 011223344444433221 1
Q ss_pred eccCCceeEEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHhhC
Q 002837 83 VREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (875)
Q Consensus 83 ~~~~Kk~~fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~~a 127 (875)
....++++|.|.. .++++|+|+|++++||++||.+|+.++.+.
T Consensus 84 ~~~kr~~~F~l~t--~~~~~yl~qA~s~~e~~~Wi~aI~~~i~~~ 126 (129)
T 2p0d_A 84 HLSSRRNVLHIRT--IPGHEFLLQSDHETELRAWHRALRTVIERL 126 (129)
T ss_dssp TSCSSSSEEEEEC--TTSCEEEEECSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEc--CCCCEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 1235668888864 457899999999999999999999998753
No 43
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}
Probab=99.59 E-value=9.9e-15 Score=137.06 Aligned_cols=103 Identities=20% Similarity=0.351 Sum_probs=73.2
Q ss_pred CCCCceEEEeeeeeeccCC-CCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEE
Q 002837 14 GASNTVFKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTV 92 (875)
Q Consensus 14 ~~s~~V~KeG~L~l~KkG~-~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fi 92 (875)
.+...++++|||+ |+|. ..+.|++|||||+++.|+||+++.+..+ ...|.|..+.+..... .....++++|.
T Consensus 16 ~~~~~~~~~G~L~--K~~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~----~g~i~L~~~~v~~~~~-~~~~~~~~~F~ 88 (128)
T 2dkp_A 16 NPNAPVVRRGWLY--KQDSTGMKLWKKRWFVLSDLCLFYYRDEKEEGI----LGSILLPSFQIALLTS-EDHINRKYAFK 88 (128)
T ss_dssp CTTSCCCEEEEEE--EECCSSSCCEEEEEEEEETTEEEEESSTTCCSE----EEEECGGGSEEEECCG-GGCCSSCSEEE
T ss_pred CCCCCcEEEEEEE--EeCCCCCCCceeEEEEEeCCEEEEECCCCCccc----ceEEEcCceEEEEcCC-cccCCCCeEEE
Confidence 4566789999887 4444 5789999999999999999998876542 1123333332221110 01125667888
Q ss_pred EEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002837 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (875)
Q Consensus 93 It~~~~~gRty~LqAdTeeE~~eWv~AI~~al~ 125 (875)
|.. .++++|+|+|+|++|+++|+.+|+.++.
T Consensus 89 i~~--~~~r~~~l~a~s~~e~~~Wi~al~~a~~ 119 (128)
T 2dkp_A 89 AAH--PNMRTYYFCTDTGKEMELWMKAMLDAAL 119 (128)
T ss_dssp EEC--SSSCCEEEECSSHHHHHHHHHHHHHHHS
T ss_pred EEc--CCCCEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 864 2469999999999999999999999875
No 44
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1.9e-14 Score=133.93 Aligned_cols=99 Identities=28% Similarity=0.436 Sum_probs=73.3
Q ss_pred CCCCceEEEeeeeeeccC-CCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcc--ee--eccCCc
Q 002837 14 GASNTVFKSGPLFISSKG-IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGS--VV--VREDKK 88 (875)
Q Consensus 14 ~~s~~V~KeG~L~l~KkG-~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~s--V~--~~~~Kk 88 (875)
.+...++++|||+ |+| ...+.|++|||||+++.|+||+++.+.. +.+.|+|..+.- +. ....++
T Consensus 17 ~~~~~~~~~G~L~--K~~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~---------~~g~i~L~~~~v~~~~~~~~~~~~ 85 (122)
T 2yry_A 17 NPNAPVTKAGWLF--KQASSGVKQWNKRWFVLVDRCLFYYKDEKEES---------ILGSIPLLSFRVAAVQPSDNISRK 85 (122)
T ss_dssp CTTCCEEEEEEEE--EECCSSSCCEEEEEEEEETTEEEEESSTTCCS---------CCEEEESTTCCCEECCTTCSCSSS
T ss_pred CCCCCccEEEEEE--EECCCCCCCcEEEEEEEeCCEEEEECCCCCCC---------cccEEEcCCCEEEEcCccccCCcc
Confidence 4456799999888 444 3578999999999999999999987764 233344443321 10 123566
Q ss_pred eeEEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002837 89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (875)
Q Consensus 89 ~~fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~ 125 (875)
++|.|.. .++++|+|+|+|++|+.+|+.+|+.++.
T Consensus 86 ~~F~i~~--~~~r~~~l~a~s~~e~~~Wi~al~~a~~ 120 (122)
T 2yry_A 86 HTFKAEH--AGVRTYFFSAESPEEQEAWIQAMGEAAR 120 (122)
T ss_dssp SEEEEEC--SSSCEEEEECSSHHHHHHHHHHHHHHHC
T ss_pred cEEEEec--CCCcEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 7888853 3469999999999999999999999874
No 45
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Probab=99.58 E-value=3.6e-15 Score=140.07 Aligned_cols=106 Identities=20% Similarity=0.310 Sum_probs=77.4
Q ss_pred CCceEEEeeeeeeccCCCCCCcEEEEEEEeC-CeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEEEE
Q 002837 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTR-TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLF 94 (875)
Q Consensus 16 s~~V~KeG~L~l~KkG~~~ksWKKRWFVL~~-~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiIt 94 (875)
...++++|||+ |+|...+.|++|||||++ +.|+||++..+..+. ..++|..+.+..+..+.....++++|.|.
T Consensus 5 ~~~~~~~G~L~--K~g~~~k~WkkRwfvL~~~~~L~yy~~~~~~~~~----g~i~L~~~~~~~~~~~~~~~~~~~~F~I~ 78 (125)
T 1unq_A 5 DVAIVKEGWLH--KRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQ----REAPLNNFSVAQCQLMKTERPRPNTFIIR 78 (125)
T ss_dssp GGCEEEEEEEE--EECSSSCCEEEEEEEEETTSEEEEESSCCCSHHH----HTSCSEEEECTTCEEEEECSSSTTEEEEE
T ss_pred CCCeeEEeeEE--eccCCccCccCcEEEEecCCEEEEEeCCCCCCCC----ceeEccceeEEeeeecccccCCCCEEEEE
Confidence 35689999776 677778999999999995 699999988764321 22355555554332122234567788775
Q ss_pred c-CCCCCceEEEEeCCHHHHHHHHHHHHHHHhhC
Q 002837 95 P-DGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (875)
Q Consensus 95 ~-~~~~gRty~LqAdTeeE~~eWv~AI~~al~~a 127 (875)
. ....+++|+|+|+|.+|+.+|+.+|+.++...
T Consensus 79 ~~~~~~~~~~~~~a~s~~e~~~Wi~al~~~~~~~ 112 (125)
T 1unq_A 79 CLQWTTVIERTFHVETPEEREEWTTAIQTVADGL 112 (125)
T ss_dssp EEETTEEEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred ecCCCCceeEEEEeCCHHHHHHHHHHHHHHHhhc
Confidence 3 22356899999999999999999999998753
No 46
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Probab=99.57 E-value=1.5e-14 Score=134.89 Aligned_cols=104 Identities=24% Similarity=0.392 Sum_probs=74.9
Q ss_pred CCCCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEEE
Q 002837 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVL 93 (875)
Q Consensus 14 ~~s~~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiI 93 (875)
.+...++++|||++... ...+.|++|||||+++.|+||+++.+..+. ..|.|.++.+...... ....++++|.|
T Consensus 6 ~p~~~~~~~G~L~K~~~-~~~~~WkkR~fvL~~~~L~yy~~~~~~~~~----g~i~l~~~~v~~~~~~-~~~~~~~~f~i 79 (123)
T 1upq_A 6 DPNLPVHIRGWLHKQDS-SGLRLWKRRWFVLSGHCLFYYKDSREESVL----GSVLLPSYNIRPDGPG-APRGRRFTFTA 79 (123)
T ss_dssp CTTSCEEEEEEEEEECS-SSSCCEEEEEEEEETTEEEEESSTTCCSCC----EEEEGGGCEEEECCSS-CTTSSSSEEEE
T ss_pred CCCCCceEEEEEEeeCC-CCCCCceeEEEEEeCCEEEEECCCCCcccc----eEEECCCCEEEECCCC-ccCCCcEEEEE
Confidence 34566999998884432 257899999999999999999998775422 2334444443322110 12346788887
Q ss_pred EcCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002837 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (875)
Q Consensus 94 t~~~~~gRty~LqAdTeeE~~eWv~AI~~al~ 125 (875)
.. .++++|+|+|+|.+|+..|+.+|+.++.
T Consensus 80 ~~--~~~r~~~l~a~s~~e~~~Wi~al~~a~~ 109 (123)
T 1upq_A 80 EH--PGMRTYVLAADTLEDLRGWLRALGRASR 109 (123)
T ss_dssp EC--TTSCCEEEECSSHHHHHHHHHHHHHHHC
T ss_pred EC--CCCeEEEEECCCHHHHHHHHHHHHHHHh
Confidence 64 3459999999999999999999999986
No 47
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Probab=99.57 E-value=6.5e-15 Score=139.51 Aligned_cols=101 Identities=22% Similarity=0.294 Sum_probs=73.1
Q ss_pred eEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccC--------Ccee
Q 002837 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED--------KKLL 90 (875)
Q Consensus 19 V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~--------Kk~~ 90 (875)
++++|||+ |+|...+.|++|||||+++.|+|||++..... ..+...|.|.+|.+..... ... +.+.
T Consensus 6 ~~k~G~L~--Kk~~~~k~W~~rwfVL~~~~L~yyK~~~~~~d-~~P~gsI~L~~c~v~~~~~---~~~~~~~~~~~~~~~ 79 (120)
T 4a6h_A 6 EIKSGFLE--RRSKFLKSYSKGYYVLTPNFLHEFKTADRKKD-LVPVMSLALSECTVTEHSR---KNSTSSPNSTGSDAK 79 (120)
T ss_dssp CSEEEEEE--EEETTTTEEEEEEEEECSSEEEEESSCCTTTC-CSCSEEEEGGGEEEEEECC---CCC---------CCE
T ss_pred ccEEEEEE--EcCCCCCCCccEEEEEeCCEEEEEcCCCcCcC-CCceEEEECCCCEEEEccc---ccccccccccCCCcE
Confidence 89999777 66667899999999999999999998764311 1233456666665544221 111 5667
Q ss_pred EEEEcCCC----CCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002837 91 TVLFPDGR----DGRAFTLKAETSEDLYEWKTALELALA 125 (875)
Q Consensus 91 fiIt~~~~----~gRty~LqAdTeeE~~eWv~AI~~al~ 125 (875)
|.|..... .+++|+|+|+|.+||++|+.+|+.+..
T Consensus 80 F~i~~~~~~~~~~~~~y~f~A~s~~e~~~Wv~aI~~~~~ 118 (120)
T 4a6h_A 80 FVLHAKQNGIIRRGHNWVFKADSYESMMSWFDNLKILTS 118 (120)
T ss_dssp EEEEESSSSSSCTTCEEEEECSSHHHHHHHHHHHHHHCC
T ss_pred EEEEeCCCCcccCceEEEEEcCCHHHHHHHHHHHHHHhc
Confidence 88765432 247999999999999999999998853
No 48
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Probab=99.57 E-value=1.2e-14 Score=131.71 Aligned_cols=103 Identities=21% Similarity=0.400 Sum_probs=72.7
Q ss_pred ceEEEeeeeeeccCC--CCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEEEEc
Q 002837 18 TVFKSGPLFISSKGI--GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFP 95 (875)
Q Consensus 18 ~V~KeG~L~l~KkG~--~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiIt~ 95 (875)
.++++|||+++..+. ..+.|++|||||+++.|+||+++.+..|. ..+.|.++.+...........++++|.|..
T Consensus 2 ~v~~~G~L~K~~~~~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~----g~i~L~~~~v~~~~~~~~~~~~~~~F~i~~ 77 (108)
T 1u5d_A 2 SVIKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQPK----GTFLIKGYSVRMAPHLRRDSKKESCFELTS 77 (108)
T ss_dssp CEEEEEEEEEEEECSSSSCEEEEEEEEEEETTEEEEESSTTCSSCS----EEEECTTCEEEECGGGCSSGGGGGEEEEEC
T ss_pred CccEEEEEEEcCCCCCccccCceeeEEEEeCCEEEEecCCCCCCCC----EEEEecceEEEeCCccccccCCcceEEEEc
Confidence 589999888655432 23899999999999999999998765422 123343333221110011234567888864
Q ss_pred CCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002837 96 DGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (875)
Q Consensus 96 ~~~~gRty~LqAdTeeE~~eWv~AI~~al~~ 126 (875)
.++++|+|+|+|.+|+.+|+.+|+.++..
T Consensus 78 --~~~r~~~l~a~s~~e~~~Wi~ai~~~i~~ 106 (108)
T 1u5d_A 78 --QDRRTYEFTATSPAEARDWVDQISFLLKD 106 (108)
T ss_dssp --SSSCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred --CCCcEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 34699999999999999999999999863
No 49
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.56 E-value=9.2e-15 Score=141.70 Aligned_cols=102 Identities=25% Similarity=0.394 Sum_probs=75.3
Q ss_pred CCCceEEEeeeeeeccC----CCCCCcEEEEEEEeCC-----eeeEecCCC-CCCCCCCceeeeeeCceEeCCCcceeec
Q 002837 15 ASNTVFKSGPLFISSKG----IGWKSWKKRWFILTRT-----SLVFFKNDP-SALPQRGGEVNLTLGGIDLNNSGSVVVR 84 (875)
Q Consensus 15 ~s~~V~KeG~L~l~KkG----~~~ksWKKRWFVL~~~-----~L~YYKd~~-~~~p~~~~e~~i~Lg~I~L~~~~sV~~~ 84 (875)
....++++|||++...+ ...+.|++|||||+++ .|+||++.. +.. +.+.|+|..+..+...
T Consensus 14 ~~~~~~~~G~L~K~~~~~~~~~~~k~Wk~RwfvL~~~~~g~~~L~yy~~~~~~~~---------~~g~I~L~~~~~~~~~ 84 (150)
T 1wg7_A 14 QKGGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKE---------PKGSIFLDSCMGVVQN 84 (150)
T ss_dssp CSCCCCCEEEEEECCCCSSHHHHHSSCEEEEEEEEECSSSCEEEEEESSSCCSSC---------CSEEECTTTCCEECCC
T ss_pred CCCCeeEEEEEEEecCCccccccccCeeEEEEEEecCCCCceEEEEECCCCCCCC---------cCcEEecccCEEEecC
Confidence 34678999988844322 3468999999999997 999999987 433 3344555554433222
Q ss_pred -cCCceeEEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHhhC
Q 002837 85 -EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (875)
Q Consensus 85 -~~Kk~~fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~~a 127 (875)
..++++|.|... ++++|+|+|++.+|+.+|+.+|+.++...
T Consensus 85 ~~~~~~~F~i~~~--~~r~~~l~A~s~~e~~~Wi~al~~ai~~~ 126 (150)
T 1wg7_A 85 NKVRRFAFELKMQ--DKSSYLLAADSEVEMEEWITILNKILQLN 126 (150)
T ss_dssp CSSCTTEEEEECS--SSCEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCceEEEEEeC--CCcEEEEEeCCHHHHHHHHHHHHHHHHhh
Confidence 356788888653 35899999999999999999999998743
No 50
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*
Probab=99.56 E-value=6.9e-15 Score=147.05 Aligned_cols=104 Identities=17% Similarity=0.178 Sum_probs=69.8
Q ss_pred ceEEEeeeeeeccCC---CCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeec---c----CC
Q 002837 18 TVFKSGPLFISSKGI---GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR---E----DK 87 (875)
Q Consensus 18 ~V~KeG~L~l~KkG~---~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~---~----~K 87 (875)
.|+|+|||+++..+. .++.||+|||||+++.|+||++..+.. ...-+.|.|+|..+..|... + .+
T Consensus 2 ~vikeG~L~Kr~~~~~~~~~k~WKkRwFVL~~~~L~Yyk~~~~~~-----~~~~~~G~I~L~~~~~ve~~~~~~~~~~~~ 76 (169)
T 1btk_A 2 AVILESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERG-----RRGSKKGSIDVEKITCVETVVPEKNPPPER 76 (169)
T ss_dssp CCCEEEEEEEECCCSSTTCCCCEEEEEEEECSSEEEEEEEETTTT-----EEEEEEEEEEGGGEEEEEECCCCSSCCGGG
T ss_pred ceEEEEEEEEecCCCCCcccCCCceEEEEEcCCEEEEEecCCccC-----CCCceeeEEECcceEEEEeccCCCCcchhc
Confidence 478999888554332 368899999999999999999832210 00114444555443222111 1 11
Q ss_pred c---------------------eeEEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHhhCCc
Q 002837 88 K---------------------LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPS 129 (875)
Q Consensus 88 k---------------------~~fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~~aP~ 129 (875)
+ ++|.|... .++|||+|+|++|+++||.+|+.++...|.
T Consensus 77 ~~~~~~~~~~~~~~~~i~~~~~~~F~I~t~---~rt~yl~A~s~~E~~eWi~aI~~~i~~n~~ 136 (169)
T 1btk_A 77 QIPRRGEESSEMEQISIIERFPYPFQVVYD---EGPLYVFSPTEELRKRWIHQLKNVIRYNSD 136 (169)
T ss_dssp CC---------CCTTHHHHCCCEEEEEEET---TCCEEEEESCHHHHHHHHHHHHHHHTTCSC
T ss_pred ccccccCcccccccccccccccccEEEEeC---CceEEEEcCCHHHHHHHHHHHHHHHHHCcc
Confidence 1 67766543 389999999999999999999999975443
No 51
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Probab=99.56 E-value=1.7e-14 Score=136.81 Aligned_cols=106 Identities=23% Similarity=0.407 Sum_probs=72.3
Q ss_pred CCceEEEeeeeeecc---CC--CCCCcEEEEEEEeCCeeeEecCCCCCCCCC--------CceeeeeeCceEeCCCccee
Q 002837 16 SNTVFKSGPLFISSK---GI--GWKSWKKRWFILTRTSLVFFKNDPSALPQR--------GGEVNLTLGGIDLNNSGSVV 82 (875)
Q Consensus 16 s~~V~KeG~L~l~Kk---G~--~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~--------~~e~~i~Lg~I~L~~~~sV~ 82 (875)
..+|.|+|||+.++- |. ..+.|++|||||+++.|+|||+.....+.+ .+...|.|.++.+.... .
T Consensus 5 ~~~v~keG~L~rK~~~~~gkk~~~r~W~~~w~VL~~~~L~~yKd~~~~~~~~~~~~~~~~~~~~~i~L~~a~v~~~~--~ 82 (124)
T 3pp2_A 5 TKTLDKAGVLHRTKTADKGKRLRKKHWSASWTVLEGGVLTFFKDSKTSAAGGLRQPSKFSTPEYTVELRGATLSWAP--K 82 (124)
T ss_dssp ----CEEEEEEEEEEEETTEECSSCCCEEEEEEEETTEEEEESCSBCC---CBCCGGGGCSEEEEEECTTCEEEECC--G
T ss_pred CCcEEEEEEEEEEEeccCCccCCCCCceEEEEEEECCEEEEEecCccccccCccCcccccCCcceEEcCCCEEEecc--c
Confidence 467999999996521 22 346899999999999999999987653211 12344444443332211 0
Q ss_pred eccCCceeEEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002837 83 VREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (875)
Q Consensus 83 ~~~~Kk~~fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~ 125 (875)
....++++|.|.. .+|+.|+|+|+++++|++|+.+|+.|++
T Consensus 83 d~~krk~vF~l~t--~~~~~ylfqA~s~~e~~~Wi~aI~~aI~ 123 (124)
T 3pp2_A 83 DKSSRKNVLELRS--RDGSEYLIQHDSEAIISTWHKAIAQGIQ 123 (124)
T ss_dssp GGCSSSSEEEEEC--TTSCEEEEECSCHHHHHHHHHHHHHHHC
T ss_pred ccCCCceEEEEEC--CCCCEEEEECCCHHHHHHHHHHHHHHHh
Confidence 2345778888864 4579999999999999999999999985
No 52
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.56 E-value=7.4e-15 Score=134.72 Aligned_cols=97 Identities=20% Similarity=0.279 Sum_probs=71.7
Q ss_pred CCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEEEEc
Q 002837 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFP 95 (875)
Q Consensus 16 s~~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiIt~ 95 (875)
...+.++|||++. ..+.|++|||||+++.|+||+++.+. ..+...+.+.++.+... ....++++|.|..
T Consensus 5 ~~~~~~~G~L~K~----~~k~Wk~RwfvL~~~~L~yyk~~~~~---~~~~~~i~l~~~~v~~~----~~~~~~~~F~i~~ 73 (107)
T 2cof_A 5 SSGLETSSYLNVL----VNSQWKSRWCSVRDNHLHFYQDRNRS---KVAQQPLSLVGCEVVPD----PSPDHLYSFRILH 73 (107)
T ss_dssp CCCCTTCCEEEEE----ETTEEEEEEEEECSSCEEEECSSTTC---SEEEEEECTTTCEEECC----CBTTBSCEEEEEE
T ss_pred CCCCcEeEEEEEe----cCCCcceEEEEEECCEEEEEeCCccc---CCCeeEEeccceEEEEC----CCCCCCeEEEEEe
Confidence 4557899988854 57889999999999999999988652 12233344444433321 1245678888765
Q ss_pred CCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002837 96 DGRDGRAFTLKAETSEDLYEWKTALELALA 125 (875)
Q Consensus 96 ~~~~gRty~LqAdTeeE~~eWv~AI~~al~ 125 (875)
. ++++|+|+|+|++|+.+||.+|+.++.
T Consensus 74 ~--~~r~~~l~A~s~~e~~~Wi~al~~~~~ 101 (107)
T 2cof_A 74 K--GEELAKLEAKSSEEMGHWLGLLLSESG 101 (107)
T ss_dssp T--TEEEEEEECSSHHHHHHHHHHHHHHSS
T ss_pred C--CCeEEEEEcCCHHHHHHHHHHHHHHHc
Confidence 3 368999999999999999999999875
No 53
>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=6.3e-15 Score=137.92 Aligned_cols=99 Identities=18% Similarity=0.320 Sum_probs=73.5
Q ss_pred CCceEEEeeeeeeccCCCCCCcEEEEEEEe--CCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEEE
Q 002837 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILT--RTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVL 93 (875)
Q Consensus 16 s~~V~KeG~L~l~KkG~~~ksWKKRWFVL~--~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiI 93 (875)
...+.++|||+ |+|...+.|++|||||+ ++.|+||+++.+.... +.+.|+|..+. |.....++++|.|
T Consensus 5 ~~~~~~~G~L~--K~~~~~~~Wk~R~fvL~~~~~~L~Yyk~~~~~~~~-------~~g~I~L~~~~-v~~~~~~~~~F~i 74 (120)
T 2d9x_A 5 SSGENVYGYLM--KYTNLVTGWQYRFFVLNNEAGLLEYFVNEQSRNQK-------PRGTLQLAGAV-ISPSDEDSHTFTV 74 (120)
T ss_dssp CSCCCCEEEEE--EEEETTTEEEEEEEEECTTTCEEEEESSGGGSSSC-------CSEEEECTTCC-EECCSSSSSCEEE
T ss_pred CCCCcEEEEEE--ecCCCCCCceEEEEEEECCCCEEEEEecCcccCCC-------ccceEEcceEE-EEecCCCCCEEEE
Confidence 34578999777 55667889999999999 4799999988764111 33445555533 3333456678887
Q ss_pred EcCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002837 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (875)
Q Consensus 94 t~~~~~gRty~LqAdTeeE~~eWv~AI~~al~~ 126 (875)
.. .++++|+|+|+|++|+++||.+|+.++..
T Consensus 75 ~~--~~~r~~~l~a~s~~e~~~Wi~al~~~~~~ 105 (120)
T 2d9x_A 75 NA--ASGEQYKLRATDAKERQHWVSRLQICTQH 105 (120)
T ss_dssp CC--SSSCCEEECCSSHHHHHHHHHHHHHHHHH
T ss_pred Ec--CCCCEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 64 33699999999999999999999999864
No 54
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A
Probab=99.55 E-value=1.4e-14 Score=143.31 Aligned_cols=102 Identities=17% Similarity=0.296 Sum_probs=65.5
Q ss_pred ceEEEeeeeee--------ccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCccee-eccCCc
Q 002837 18 TVFKSGPLFIS--------SKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV-VREDKK 88 (875)
Q Consensus 18 ~V~KeG~L~l~--------KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~-~~~~Kk 88 (875)
.|+++|||+++ |+|...+.|++|||||+++.|+||+++.+......+.+.+.+.++.+. +. ....++
T Consensus 2 dv~~eG~L~~k~~~~~~gkK~g~~~k~WkkRwfvL~~~~L~yyk~~~~~~~~~~g~i~l~~~~~~~~----~~~~~~~~~ 77 (168)
T 2j59_M 2 DAAKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPISVNACLID----ISYSETKRK 77 (168)
T ss_dssp -CCEEEEEEEEECC------------CCEEEEEEEETTEEEEESCTTCC--------CEECSSCEEE----ECSSSCSCS
T ss_pred CCcEEEEEeeeeecccCCcccCCCCCCceEEEEEEeCCEEEEEECCcccccccCCceEecccceEEE----eccccCCCC
Confidence 47899999965 556678999999999999999999998653211112222222211111 11 123567
Q ss_pred eeEEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002837 89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (875)
Q Consensus 89 ~~fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~~ 126 (875)
++|.|... +++|+|+|++++|+.+||.+|+.++..
T Consensus 78 ~~F~I~t~---~r~~~l~A~s~~e~~~Wi~ai~~~~~~ 112 (168)
T 2j59_M 78 NVFRLTTS---DCECLFQAEDRDDMLAWIKTIQESSNL 112 (168)
T ss_dssp SEEEEECS---SCEEEEECSSHHHHHHHHHHHHHHCCC
T ss_pred CEEEEEeC---CceEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 88988754 389999999999999999999999864
No 55
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A
Probab=99.55 E-value=2.7e-14 Score=138.41 Aligned_cols=105 Identities=22% Similarity=0.366 Sum_probs=72.9
Q ss_pred CCceEEEeeeeeeccCC--CCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEEE
Q 002837 16 SNTVFKSGPLFISSKGI--GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVL 93 (875)
Q Consensus 16 s~~V~KeG~L~l~KkG~--~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiI 93 (875)
...++++|||+++..+. ..+.|++|||||+++.|+||++..+..+. ..|.|.++.+...........+.++|.|
T Consensus 14 ~~~~~~~G~L~K~g~~~~~~~k~WkkR~fvL~~~~L~yyk~~~~~~~~----g~i~L~~~~v~~~~~~~~~~~~~~~F~I 89 (148)
T 1u5f_A 14 LPFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQK----GEFAIDGYDVRMNNTLRKDGKKDCCFEI 89 (148)
T ss_dssp CSSEEEEEEEEEECCCSSCSSCSEEEEEEEEETTEEEEESSTTCSSCS----EEEECTTCEEEECTTSCSSTTGGGEEEE
T ss_pred CCCccEEEEEEEeCCCCCCcCCCceeEEEEEECCEEEEEcCCCCcccc----eEEEcCCcEEEECCCcccCCCCccEEEE
Confidence 46799999888554321 35799999999999999999998775421 1233333332211100012344588888
Q ss_pred EcCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002837 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (875)
Q Consensus 94 t~~~~~gRty~LqAdTeeE~~eWv~AI~~al~~ 126 (875)
.. .++++|+|+|+|.+++.+|+.+|+.++..
T Consensus 90 ~~--~~~r~~~l~a~s~~e~~~Wi~al~~~i~~ 120 (148)
T 1u5f_A 90 CA--PDKRIYQFTAASPKDAEEWVQQLKFILQD 120 (148)
T ss_dssp EC--TTSCEEEEECSSHHHHHHHHHHHHHHCC-
T ss_pred EC--CCCcEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 64 34699999999999999999999999863
No 56
>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}
Probab=99.55 E-value=5.2e-15 Score=140.23 Aligned_cols=104 Identities=22% Similarity=0.349 Sum_probs=71.8
Q ss_pred CCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcc--eeec----cCCce
Q 002837 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGS--VVVR----EDKKL 89 (875)
Q Consensus 16 s~~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~s--V~~~----~~Kk~ 89 (875)
...|+++|||++...|...+.|++|||||+++.|+||+++.+.. ... +.+.|+|..+.. |... ..+++
T Consensus 2 ~~~v~~~G~L~K~~~~~~~~~WkrRwfvL~~~~L~yyk~~~d~~-~~~-----p~g~I~L~~~~~~~v~~~~~~~~~~~~ 75 (134)
T 2y7b_A 2 NSSVEERGFLTIFEDVSGFGAWHRRWCVLSGNCISYWTYPDDEK-RKN-----PIGRINLANCTSRQIEPANREFCARRN 75 (134)
T ss_dssp CCCCCEEEEEEEEEEETTEEEEEEEEEEEETTEEEEESSHHHHT-TSC-----CSEEEEGGGBCSSSCEECCTTTCCCTT
T ss_pred CCCceEEeeEEEEcCCCCCCCcEEEEEEEECCEEEEECCCCccc-ccC-----ceEEEEhhhCccccccccchhhccCCC
Confidence 35688999888554366788999999999999999999654311 001 333455544331 2222 24667
Q ss_pred eEEEEcC--CC---------------CCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002837 90 LTVLFPD--GR---------------DGRAFTLKAETSEDLYEWKTALELALA 125 (875)
Q Consensus 90 ~fiIt~~--~~---------------~gRty~LqAdTeeE~~eWv~AI~~al~ 125 (875)
+|.|... .. ..++|+|+|+|++|+..||.+|+.++.
T Consensus 76 ~F~i~~~~p~~~~~~~~~~~~~~~~~~~r~~~l~A~s~~e~~~Wi~al~~~i~ 128 (134)
T 2y7b_A 76 TFELITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQKLNQVLV 128 (134)
T ss_dssp EEEEEEEEECCTTCCCCSSEEEETTEEEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCcccccccccccccCCCceEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 8877531 11 115899999999999999999999986
No 57
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=2.3e-14 Score=132.23 Aligned_cols=102 Identities=24% Similarity=0.367 Sum_probs=73.3
Q ss_pred CCCceEEEeeeeeeccC-CCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEEE
Q 002837 15 ASNTVFKSGPLFISSKG-IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVL 93 (875)
Q Consensus 15 ~s~~V~KeG~L~l~KkG-~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiI 93 (875)
+...++++|||+ |++ ...+.|++|||||+++.|+||+++.+..+. ..+.|..+.+..... .....++++|.|
T Consensus 7 p~~~~~~~G~L~--K~~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~----g~i~L~~~~v~~~~~-~~~~~~~~~F~i 79 (117)
T 2d9y_A 7 GNAPVTKAGWLF--KQASSGVKQWNKRWFVLVDRCLFYYKDEKEESIL----GSIPLLSFRVAAVQP-SDNISRKHTFKA 79 (117)
T ss_dssp SSCCCCEEEEEE--EECTTSSSCEEEEEEEEETTEEEEESSTTCCSCC----EEEECSSCEEEECCT-TTTCCCSSEEEE
T ss_pred CCCCeeEEEEEE--EeCCCCCCCceEEEEEECCCEEEEECCCCCCCcC----CEEEeCCeEEEEcCc-cccCCCccEEEE
Confidence 446689999887 444 357899999999999999999988776422 233444433321100 012356678888
Q ss_pred EcCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002837 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (875)
Q Consensus 94 t~~~~~gRty~LqAdTeeE~~eWv~AI~~al~ 125 (875)
.. .++++|+|+|+|++|+.+|+.+|+.++.
T Consensus 80 ~~--~~~r~~~l~a~s~~e~~~Wi~al~~~~~ 109 (117)
T 2d9y_A 80 EH--AGVRTYFFSAESPEEQEAWIQAMGEAAR 109 (117)
T ss_dssp EC--SSSCEEEEECSSHHHHHHHHHHHHHTTC
T ss_pred Ec--CCCcEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 53 3469999999999999999999999875
No 58
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A
Probab=99.55 E-value=1.2e-14 Score=133.59 Aligned_cols=103 Identities=24% Similarity=0.467 Sum_probs=71.9
Q ss_pred CceEEEeeeeeeccCCCCCCcEEEEEEE-eCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCccee---ecc--CCcee
Q 002837 17 NTVFKSGPLFISSKGIGWKSWKKRWFIL-TRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV---VRE--DKKLL 90 (875)
Q Consensus 17 ~~V~KeG~L~l~KkG~~~ksWKKRWFVL-~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~---~~~--~Kk~~ 90 (875)
..++++|||+ |+|...+.|++||||| .++.|+||+++.+..+. +.+.+..+.|+|.....+. ... .++++
T Consensus 3 ~~~~~~G~L~--K~g~~~k~WkkR~fvL~~~~~L~yyk~~~~~~~~--g~i~l~~~~i~l~~~~~v~~v~~~~~~~~~~~ 78 (112)
T 3aj4_A 3 MAFVKSGWLL--RQSTILKRWKKNWFDLWSDGHLIYYDDQTRQNIE--DKVHMPMDCINIRTGQECRDTQPPDGKSKDCM 78 (112)
T ss_dssp CSCSEEEEEE--EECSSSCCEEEEEEEECTTSEEEEESSTTCCSEE--EEEEHHHHEEEEEEGGGCCSCCCSTTCCGGGE
T ss_pred cceeEEEEEE--eeCCCCCCeeceEEEEeeCCEEEEEcCCCCCCCC--ccccccccceeecccccccccCCCCCCCcCcE
Confidence 4578999777 6677789999999999 88899999998765322 1122222234444322221 112 22568
Q ss_pred EEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002837 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (875)
Q Consensus 91 fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~ 125 (875)
|.|.. +++++|+|+|+|++|+.+|+.+|+.|..
T Consensus 79 F~i~~--~~~r~~~l~a~s~~e~~~Wi~al~~a~~ 111 (112)
T 3aj4_A 79 LQIVC--RDGKTISLCAESTDDCLAWKFTLQDSRT 111 (112)
T ss_dssp EEEEE--TTSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred EEEEe--cCCcEEEEEeCCHHHHHHHHHHHHHHhh
Confidence 88763 2369999999999999999999999863
No 59
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.54 E-value=2.3e-14 Score=134.22 Aligned_cols=99 Identities=18% Similarity=0.220 Sum_probs=74.5
Q ss_pred CceEEEeeeeeeccCCCCCCcEEEEEEEeCC---eeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEEE
Q 002837 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRT---SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVL 93 (875)
Q Consensus 17 ~~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~---~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiI 93 (875)
..+++.|||++. +. .+.|++|||||+++ .|+||++..+..|. ..|+|.++.+..... ....+++++|.|
T Consensus 6 ~~~~~~G~L~k~--~~-~~~WkkrWfVL~~~~~~~Ly~Yk~~~d~~p~----g~I~L~g~~V~~~~~-~~~~~~~~~Fki 77 (112)
T 2coc_A 6 SGSLLCGPLRLS--ES-GETWSEVWAAIPMSDPQVLHLQGGSQDGRLP----RTIPLPSCKLSVPDP-EERLDSGHVWKL 77 (112)
T ss_dssp SSSSSEEEEEEE--SS-SSCEEEEEEECCTTCTTCEEEECCTTCSSSC----SEECGGGCEEECCCS-SSCCSSSEEEEE
T ss_pred CCceEEEEEEec--CC-CCCceEEEEEEECCCccEEEEECCCCccCcc----eEEEcCCCEEEecCc-ccccCCCCEEEE
Confidence 445677988863 32 78899999999985 79999999886533 356777766663211 122457889988
Q ss_pred EcCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002837 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (875)
Q Consensus 94 t~~~~~gRty~LqAdTeeE~~eWv~AI~~al~~ 126 (875)
... +++|+|+|+++++|++||.+|+.|+..
T Consensus 78 ~~~---~~~y~f~A~s~e~~~~Wl~al~~A~~~ 107 (112)
T 2coc_A 78 QWA---KQSWYLSASSAELQQQWLETLSTAAHS 107 (112)
T ss_dssp EET---TEEEEEEESSHHHHHHHHHHHHHHHSC
T ss_pred ecC---CeEEEEEcCCHHHHHHHHHHHHHHhcC
Confidence 743 589999999999999999999998763
No 60
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1
Probab=99.53 E-value=1.3e-14 Score=136.39 Aligned_cols=110 Identities=17% Similarity=0.238 Sum_probs=75.8
Q ss_pred CCCCceEEEeeeeeecc----C--CCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceee--cc
Q 002837 14 GASNTVFKSGPLFISSK----G--IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV--RE 85 (875)
Q Consensus 14 ~~s~~V~KeG~L~l~Kk----G--~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~--~~ 85 (875)
+.+..|.|+|||+++.. | ...+.|++|||||+++.|+||+++.+..+.+.... ...+.|+|..+..... ..
T Consensus 3 ~~~~~v~k~G~L~rK~~~~~~gkk~~~~~Wk~rw~vL~~~~L~~yk~~~~~~~~~~~~~-~~~~~i~L~~~~v~~~~d~~ 81 (122)
T 1dro_A 3 GTGAGEGHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTF-RGEPSYDLQNAAIEIASDYT 81 (122)
T ss_dssp SCCSSSSEEEEEEEECSCCCCCCTTCCCCCEEEEEEESSSCCBEESSSSHHHHCTTCCS-SCCCBCCCSSCCCEECCSSS
T ss_pred CCCCceEEEEEEEEEEEEeCCCccCCCCCccEEEEEEECCEEEEEeCCcccccCCCccc-CCCceEECCCCEEEeCCCCC
Confidence 34567899999985532 1 14789999999999999999999886543211100 0112344433221111 23
Q ss_pred CCceeEEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002837 86 DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (875)
Q Consensus 86 ~Kk~~fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~~ 126 (875)
.++++|.|.+ .++++|+|+|++++||++||.+|+.++..
T Consensus 82 kr~~~F~l~t--~~~~~~lfqA~s~~e~~~Wi~ai~~~i~~ 120 (122)
T 1dro_A 82 KKKHVLRVKL--ANGALFLLQAHDDTEMSQWVTSLKAQSDS 120 (122)
T ss_dssp SSTTEEEEEC--SSSCEEEEECSSSHHHHHHHHHHHHHHTC
T ss_pred CCCeEEEEEE--cCCCEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 5678898873 34799999999999999999999999864
No 61
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}
Probab=99.52 E-value=4.9e-14 Score=133.58 Aligned_cols=104 Identities=18% Similarity=0.270 Sum_probs=67.3
Q ss_pred ceEEEeeeeeecc-C-CCCCCcEEEEEEEeC-CeeeEecCCCCCC-CCCCc-------eeeeeeCceEeCCCcce-----
Q 002837 18 TVFKSGPLFISSK-G-IGWKSWKKRWFILTR-TSLVFFKNDPSAL-PQRGG-------EVNLTLGGIDLNNSGSV----- 81 (875)
Q Consensus 18 ~V~KeG~L~l~Kk-G-~~~ksWKKRWFVL~~-~~L~YYKd~~~~~-p~~~~-------e~~i~Lg~I~L~~~~sV----- 81 (875)
.++|+|||+ |+ | ...+.|++|||||++ +.|+||++..+.. ...+. .+.++.+.|.|..+...
T Consensus 3 ~~~k~G~L~--K~~g~~~~k~WkkRwFvL~~~~~l~Y~~~~~d~~~~~~~~~i~l~~~~~~~~~~~i~l~~~~~~~~~~~ 80 (128)
T 2rlo_A 3 IPIKQSFLL--KRSGNSLNKEWKKKYVTLSSNGFLLYHPSINDYIHSTHGKEMDLLRTTVKVPGKRPPRAISAFGPSASG 80 (128)
T ss_dssp CEEEEEEEE--EECSCSTTCCEEEEEEEEETTTEEEEESSHHHHHHTCSCEEEESSSCEEECSSCCCCCSSCCCSCCSCC
T ss_pred cceeEEEEE--EecCCCccCCccEEEEEEeCCCEEEEecchhhhccccCCCeeeeeeeEEecCCCccccccccccccccc
Confidence 478999887 45 4 257999999999996 7888887632210 00011 11222233333332111
Q ss_pred -e-eccCCceeEEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002837 82 -V-VREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (875)
Q Consensus 82 -~-~~~~Kk~~fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~ 125 (875)
. ..+.++++|.|.. .++++|+|+|+|++|+++||.||+.++.
T Consensus 81 ~~~~~~~~~~~F~I~t--~~~r~~~l~A~s~~e~~~Wi~ai~~~i~ 124 (128)
T 2rlo_A 81 SAGQAEEENFEFLIVS--STGQTWHFEAASFEERDAWVQAIESQIL 124 (128)
T ss_dssp CCSSCCCCCCCEEEEC--TTSCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred cccccccCCceEEEEc--CCCCEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 0 1125677887753 3469999999999999999999999986
No 62
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A
Probab=99.52 E-value=2.8e-14 Score=129.28 Aligned_cols=94 Identities=20% Similarity=0.364 Sum_probs=67.2
Q ss_pred EEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEEEEcCCCCC
Q 002837 21 KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDG 100 (875)
Q Consensus 21 KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiIt~~~~~g 100 (875)
++|||+ |+|...+.|++|||||+++.|+||+++.+.... +.|.|+|..+ .+.....+.++|.|.. .++
T Consensus 1 ~eG~L~--K~g~~~k~Wk~R~fvL~~~~L~Yy~~~~~~~~~-------~~g~i~L~~~-~v~~~~~~~~~F~i~~--~~~ 68 (103)
T 3rcp_A 1 MEGVLY--KWTNYLTGWQPRWFVLDNGILSYYDSQDDVCKG-------SKGSIKMAVC-EIKVHSADNTRMELII--PGE 68 (103)
T ss_dssp CEEEEE--EECCTTTCEEEEEEEEETTEEEEESSCC---CC-------CSCEEEGGGC-EEECCTTCSSEEEEEE--TTT
T ss_pred CceEEE--EccCCCCCeeceEEEEECCEEEEEecCCcccCC-------cccEEEeeee-EEEEcCCCCceEEEEe--CCC
Confidence 479776 777778999999999999999999998764211 2334455322 2222233456676653 236
Q ss_pred ceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002837 101 RAFTLKAETSEDLYEWKTALELALAQ 126 (875)
Q Consensus 101 Rty~LqAdTeeE~~eWv~AI~~al~~ 126 (875)
++|+|+|+|++|+++|+.+|+.|+..
T Consensus 69 r~~~l~a~s~~e~~~Wi~al~~a~~~ 94 (103)
T 3rcp_A 69 QHFYMKAVNAAERQRWLVALGSSKAS 94 (103)
T ss_dssp EEEEEECSSHHHHHHHHHHHHTTSCC
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998763
No 63
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A
Probab=99.50 E-value=6.3e-14 Score=144.96 Aligned_cols=99 Identities=22% Similarity=0.357 Sum_probs=74.4
Q ss_pred CceEEEeeeeeeccCC--CCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceee-----ccCCce
Q 002837 17 NTVFKSGPLFISSKGI--GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-----REDKKL 89 (875)
Q Consensus 17 ~~V~KeG~L~l~KkG~--~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~-----~~~Kk~ 89 (875)
..++++|||+++..+. ..+.|++|||||+++.|+||+++.+.. +.+.|.|..+..+.. ...+++
T Consensus 104 ~~v~k~G~L~Kkg~~~~~~~k~WkkRwfVL~~~~L~Yyk~~~~~~---------p~g~I~L~~~~~v~~~~~~~~~~k~~ 174 (211)
T 1u5e_A 104 PFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQ---------QKGEFAIDGYDVRMNNTLRKDGKKDC 174 (211)
T ss_dssp SSEEEEEEEEEEEHHHHTTTCCCEEEEEEEETTEEEEESSTTCSS---------CSEEEECTTCEEEECGGGCSSTTGGG
T ss_pred CCccEEEEEEEECCCCCcCCCCcEeEEEEEECCEEEEEcCCCCcc---------ceEEEEeCCcEEEEcCCccccCCCCC
Confidence 4599999888554321 468999999999999999999988754 233445544433321 234568
Q ss_pred eEEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002837 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (875)
Q Consensus 90 ~fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~~ 126 (875)
+|.|.. .++++|+|+|+|.+++..||.+|+.++..
T Consensus 175 ~F~I~t--~~~r~~~l~A~s~~e~~~Wi~aL~~ai~~ 209 (211)
T 1u5e_A 175 CFEICA--PDKRIYQFTAASPKDAEEWVQQLKFILQD 209 (211)
T ss_dssp EEEEEC--SSSCEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred EEEEEc--CCCCEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 898864 34699999999999999999999999863
No 64
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A
Probab=99.49 E-value=6.8e-14 Score=126.87 Aligned_cols=98 Identities=21% Similarity=0.320 Sum_probs=66.1
Q ss_pred EEeeeeeecc----C--CCCCCcEEEEEEEeCCeeeEecCCCCCC--CCCCceeeeeeCceEeCCCcceeeccCCceeEE
Q 002837 21 KSGPLFISSK----G--IGWKSWKKRWFILTRTSLVFFKNDPSAL--PQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTV 92 (875)
Q Consensus 21 KeG~L~l~Kk----G--~~~ksWKKRWFVL~~~~L~YYKd~~~~~--p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fi 92 (875)
++|||+++.. | ...+.|++|||||+++.|+||+++.+.. ....+...+.+.++.+... .....++++|.
T Consensus 1 ~eG~L~kk~~~~~~gk~~~~~~Wk~rwfvL~~~~L~yyk~~~~~~~~~~~~~~~~i~l~~~~~~~~---~~~~~~~~~F~ 77 (106)
T 1btn_A 1 MEGFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEAICEVA---LDYKKKKHVFK 77 (106)
T ss_dssp CEEEEEEEEEECSTTCBCSCCCCEEEEEEEETTEEEEESSHHHHHHTCCSSSCCCEECTTCEEEEC---SSCCSSSSEEE
T ss_pred CccEEEEEEEEeCCCccCCCCChhEEEEEEECCEEEEEeCCcccccCCCCCCcceEECCCCEEEEc---ccccCCccEEE
Confidence 4798885541 1 4578999999999999999999876321 0011222334433222111 11235677888
Q ss_pred EEcCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 002837 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELA 123 (875)
Q Consensus 93 It~~~~~gRty~LqAdTeeE~~eWv~AI~~a 123 (875)
|.. .++++|+|+|+|++|+.+||.+|+.|
T Consensus 78 i~~--~~~~~~~~~A~s~~e~~~Wi~ai~~A 106 (106)
T 1btn_A 78 LRL--SDGNEYLFQAKDDEEMNTWIQAISSA 106 (106)
T ss_dssp EEC--TTSCEEEEECSSHHHHHHHHHHHHHC
T ss_pred EEe--cCCCEEEEECCCHHHHHHHHHHHhcC
Confidence 864 35799999999999999999999864
No 65
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A
Probab=99.47 E-value=1.1e-13 Score=147.85 Aligned_cols=108 Identities=21% Similarity=0.287 Sum_probs=73.4
Q ss_pred CCceEEEeeeeee------ccCCC----CCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCccee--e
Q 002837 16 SNTVFKSGPLFIS------SKGIG----WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV--V 83 (875)
Q Consensus 16 s~~V~KeG~L~l~------KkG~~----~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~--~ 83 (875)
...|+|+|||+++ |+|.. ++.|++|||||+++.|+||+++....... ...+.+.|+|..+.... .
T Consensus 8 ~~~v~K~G~L~~k~~~~~~K~g~~~~~~~K~WkrRWfVL~~~~L~yyK~~~~~~~~~---~~~p~g~I~L~~~~v~~~~~ 84 (263)
T 3a8p_A 8 QGVVRKAGWLFFKPLVTLQKERKLELVARRKWKQYWVTLKGCTLLFYETYGKNSTEQ---NSAPRCALFAEDSIVQSVPE 84 (263)
T ss_dssp --CEEEEEEEEEEEEEEEEGGGEEEECTTCCCEEEEEEEETTEEEEESSCCC---------CCCSEEEECTTCEEEECTT
T ss_pred CCCeEEEEEeeecccccccCCCCccCccCCCceEEEEEEcCCEEEEEecCccccccc---ccCccceEEcCCcEEEECCc
Confidence 4669999999832 45555 78999999999999999999864211000 00123334443221111 1
Q ss_pred ccCCceeEEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHhhCC
Q 002837 84 REDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAP 128 (875)
Q Consensus 84 ~~~Kk~~fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~~aP 128 (875)
...++++|.|.. .++++|+|+|+|++||++||.+|+.++...+
T Consensus 85 ~~kk~~~F~I~t--~~~r~y~f~A~s~ee~~~Wi~aI~~a~~~~~ 127 (263)
T 3a8p_A 85 HPKKEHVFCLSN--SCGDVYLFQATSQTDLENWVTAIHSACASLF 127 (263)
T ss_dssp CSSCSSEEEEEC--TTSCEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEc--CCCcEEEEEcCCHHHHHHHHHHHHHHHHhcc
Confidence 234678998874 2579999999999999999999999987544
No 66
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=99.46 E-value=1.1e-13 Score=155.96 Aligned_cols=104 Identities=20% Similarity=0.273 Sum_probs=76.9
Q ss_pred CCCCceEEEeeeeeec-cCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEE
Q 002837 14 GASNTVFKSGPLFISS-KGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTV 92 (875)
Q Consensus 14 ~~s~~V~KeG~L~l~K-kG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fi 92 (875)
...+.+.|+||||++. .|+.++.|+||||||+++.|+||+..... +...+.|.+|.+.. ....+++|||.
T Consensus 296 ~~~~~~~k~G~L~k~~~~g~~~~~W~rrwfvl~~~~l~y~~~~~~~-----~~~~~~l~~~~v~~----~~~~~r~~cF~ 366 (407)
T 4h8s_A 296 INRNLIQKAGYLNLRNKTGLVTTTWERLYFFTQGGNLMCQPRGAVA-----GGLIQDLDNCSVMA----VDCEDRRYCFQ 366 (407)
T ss_dssp CCCSCSCCEEEEEEEEECSSSCEEEEEEEEEECSSCEECCCTTCSS-----CCCCBCSSCCEEEE----ECCTTCSSEEE
T ss_pred ccCCcceeeceeeeeccCCCCCCCceEEEEEEECCEEEEEeCCCCC-----CCeEEECCceEEEE----CCCCCCCceEE
Confidence 3445689999999764 46668899999999999999999865443 11223444444432 22357889998
Q ss_pred EEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHhhC
Q 002837 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (875)
Q Consensus 93 It~~~~~gRty~LqAdTeeE~~eWv~AI~~al~~a 127 (875)
|.... ..++|+|+|+|++|+.+||.||+.++.++
T Consensus 367 i~~~~-~~~~~~l~A~s~~e~~~Wi~ai~~a~~~~ 400 (407)
T 4h8s_A 367 ITTPN-GKSGIILQAESRKENEEWICAINNISRQI 400 (407)
T ss_dssp EECTT-SSCCEEEECSSSHHHHHHHHHHHHHHSCC
T ss_pred EEecC-CCceEEEEcCCHHHHHHHHHHHHHHHHHh
Confidence 86421 24789999999999999999999998754
No 67
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Probab=99.45 E-value=2e-13 Score=142.65 Aligned_cols=97 Identities=28% Similarity=0.555 Sum_probs=78.9
Q ss_pred CCceEEEeeeeeeccCCC-----CCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCcee
Q 002837 16 SNTVFKSGPLFISSKGIG-----WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLL 90 (875)
Q Consensus 16 s~~V~KeG~L~l~KkG~~-----~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~ 90 (875)
...++++|||+ |+|.. .+.|++|||||+++.|+||+++.+.. +.+.|+|..+..+.....++++
T Consensus 55 ~~~~~k~G~L~--K~g~~~~~~~~k~WkkRwfvL~~~~L~Yyk~~~~~~---------~~g~I~L~~~~~v~~~~~k~~~ 123 (228)
T 3tfm_A 55 KQEALKQGWLH--NNGGGSSTLSRRNWKKRWFVLRQSKLMYFENDSEEK---------LKGTVEVRSAKEIIDNTNKENG 123 (228)
T ss_dssp CCCSSEEEEEE--ECGGGCSSSCGGGCEEEEEEECSSEEEEESSTTCCS---------EEEEEEGGGCSEEEEETTTTSE
T ss_pred CCCcceEEEEE--EECCCcCCcccCCceEEEEEEeCCEEEEEeCCCCcc---------eeEEEEcCCCEEeccCCCCCcE
Confidence 45689999877 44443 38999999999999999999987753 5667778776655555577788
Q ss_pred EEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002837 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (875)
Q Consensus 91 fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~~ 126 (875)
|.|... +++|+|+|+|++|+.+|+.+|+.++..
T Consensus 124 F~I~t~---~r~~~l~A~s~~e~~~Wv~aL~~~i~~ 156 (228)
T 3tfm_A 124 IDIIMA---DRTFHLIAESPEDASQWFSVLSQVHSS 156 (228)
T ss_dssp EEEECS---SCEEEEECSSHHHHHHHHHHHHHHHTC
T ss_pred EEEEcC---CcEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 888653 599999999999999999999999974
No 68
>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus}
Probab=99.41 E-value=2.2e-12 Score=123.16 Aligned_cols=102 Identities=15% Similarity=0.283 Sum_probs=72.9
Q ss_pred EEEeeeeee---ccCCC--CCCcEEEEEEEeCCeeeEecCCCCCCC-----CCCceeeeeeCceEeCCCcceeeccCCce
Q 002837 20 FKSGPLFIS---SKGIG--WKSWKKRWFILTRTSLVFFKNDPSALP-----QRGGEVNLTLGGIDLNNSGSVVVREDKKL 89 (875)
Q Consensus 20 ~KeG~L~l~---KkG~~--~ksWKKRWFVL~~~~L~YYKd~~~~~p-----~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~ 89 (875)
..+|+|..+ |.|+. +++|++|||||.++.|+||+....... ...+...|+|.|+.+.... ...+++
T Consensus 2 ~~~G~L~rk~llK~G~k~~~ksWkr~W~vL~g~~L~yf~~~~~~~~~~~~~~~~P~~~i~L~g~~V~~~e----~~~~~~ 77 (126)
T 2dtc_A 2 TMEGPLRRKTLLKEGRKPALSSWTRYWVVLSGATLLYYGAKSLRGTDRKHYKSTPGKKVSIVGWMVQLPD----DPEHPD 77 (126)
T ss_dssp CEEEEEEEEEEEBTTBCCSSCCCEEEEEEEETTEEEEEEBSSSCCSSGGGBCSSCSEEEECTTCEEECCC----CTTSTT
T ss_pred ceeeeeeeeehhhcCCcccccCcccEEEEEeCCEEEEEcccccccccccccccCCCceEEeCCCEEEecC----CCCCCC
Confidence 467888754 55553 789999999999999999996631110 1112334566665554211 235778
Q ss_pred eEEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002837 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (875)
Q Consensus 90 ~fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~~ 126 (875)
+|.|.. ...|.+|+|+|++++++..|++||+.++..
T Consensus 78 ~F~L~~-~~~G~~Y~fqA~s~~~~~~W~~ai~~a~~~ 113 (126)
T 2dtc_A 78 IFQLNN-PDKGNVYKFQTGSRFHAILWHKHLDDACKS 113 (126)
T ss_dssp EEEEEC-TTSCSEEEEECSSHHHHHHHHHHHHHHHTS
T ss_pred EEEEee-CCCCCEEEEeCCCHHHHHHHHHHHHHHHhc
Confidence 998873 236899999999999999999999999864
No 69
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=99.41 E-value=4.4e-13 Score=150.00 Aligned_cols=99 Identities=20% Similarity=0.277 Sum_probs=68.6
Q ss_pred CceEEEeeeeeeccCC-CCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEEEEc
Q 002837 17 NTVFKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFP 95 (875)
Q Consensus 17 ~~V~KeG~L~l~KkG~-~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiIt~ 95 (875)
+.++|+|||+++..++ .++.|++|||||+++.|+||++ .+.. +...+.|.+|.+.. ....++++||.|.+
T Consensus 276 ~~~~k~G~L~K~~~~~~~~~~WkkRwfvL~~~~L~y~k~-~~~~----~~~~i~l~~~~v~~----~~~~~r~~~F~i~t 346 (385)
T 2q13_A 276 NLTRKAGYLNARNKTGLVSSTWDRQFYFTQGGNLMSQAR-GDVA----GGLAMDIDNCSVMA----VDCEDRRYCFQITS 346 (385)
T ss_dssp CCSCCEEEEEEC--------CCEEEEEEEETTEEEEECS-SCSS----CEEEEECTTCEEEE----ECCTTCSSEEEEEC
T ss_pred CCccEEEEEEEecCCCCCcCCceeEEEEEECCEEEEecC-CCcC----CCceEEccceEEEe----ccccCCCceEEEEe
Confidence 4689999998543322 2457999999999999999998 3322 12233444433321 12256779998864
Q ss_pred CCCCC-ceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002837 96 DGRDG-RAFTLKAETSEDLYEWKTALELALAQ 126 (875)
Q Consensus 96 ~~~~g-Rty~LqAdTeeE~~eWv~AI~~al~~ 126 (875)
. +| ++|+|+|+|++|+++||.||+.++..
T Consensus 347 ~--~~~~~~~l~A~s~~e~~~Wi~ai~~~~~~ 376 (385)
T 2q13_A 347 F--DGKKSSILQAESKKDHEEWICTINNISKQ 376 (385)
T ss_dssp T--TSCBCCCEECSSHHHHHHHHHHHHHHHTT
T ss_pred C--CCCeEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 3 34 89999999999999999999999864
No 70
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Probab=99.40 E-value=7.3e-13 Score=146.65 Aligned_cols=101 Identities=26% Similarity=0.417 Sum_probs=74.8
Q ss_pred ceEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcce-eeccCCceeEEEEcC
Q 002837 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSV-VVREDKKLLTVLFPD 96 (875)
Q Consensus 18 ~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV-~~~~~Kk~~fiIt~~ 96 (875)
.++++|||+ |+|+..+.|++|||||+++.|+||+++.+.. +.|.|+|..+... .....+++||.|...
T Consensus 212 ~~~k~G~L~--K~g~~~k~WkkRwFVL~~~~L~Yyk~~~~~~---------p~G~I~L~~~~v~~~~~~~~~~~F~I~~~ 280 (347)
T 2r09_A 212 NPDREGWLL--KLGGRVKTWKRRWFILTDNCLYYFEYTTDKE---------PRGIIPLENLSIREVEDPRKPNCFELYNP 280 (347)
T ss_dssp CCCEEEEEE--EECSSSCCEEEEEEEEETTEEEEESSTTCSS---------CSEEEECTTCEEEEECCSSCSSEEEEECS
T ss_pred ccccCCeeE--ecCCCcccceeEEEEEcCCEEEEEcCCCccC---------CcEEEEcCCeEEEEccCCCCCCEEEEEeC
Confidence 368999877 6677789999999999999999999987654 2233444433211 112456788887643
Q ss_pred C-------------------CCCceEEEEeCCHHHHHHHHHHHHHHHhhCCc
Q 002837 97 G-------------------RDGRAFTLKAETSEDLYEWKTALELALAQAPS 129 (875)
Q Consensus 97 ~-------------------~~gRty~LqAdTeeE~~eWv~AI~~al~~aP~ 129 (875)
. ..+++|+|+|+|++|+.+|+.+|+.++...|.
T Consensus 281 ~~~~~~~~~~k~~~~g~~v~~~~r~y~l~A~s~ee~~~Wi~aI~~ai~~~~~ 332 (347)
T 2r09_A 281 SHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISRDPF 332 (347)
T ss_dssp SSTTCCCCCEEECTTSCEEECCCSCEEEECSSHHHHHHHHHHHHHHHHCCHH
T ss_pred CccccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhcCCC
Confidence 1 12489999999999999999999999975543
No 71
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=99.39 E-value=1.1e-12 Score=147.32 Aligned_cols=98 Identities=23% Similarity=0.387 Sum_probs=74.1
Q ss_pred CCCceEEEeeeeeeccCCCC-CCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcce------eecc-C
Q 002837 15 ASNTVFKSGPLFISSKGIGW-KSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSV------VVRE-D 86 (875)
Q Consensus 15 ~s~~V~KeG~L~l~KkG~~~-ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV------~~~~-~ 86 (875)
....++|+|||+ |+|... +.||+|||||+++.|+||+++.+.. ++|.|.|..+..+ .... .
T Consensus 265 l~~~~~k~G~L~--K~g~~~~k~WKkRwFVL~~~~L~YYk~~~d~~---------~~G~I~L~~~~~~~~v~~~~~~~~~ 333 (386)
T 3lju_X 265 LSRNYLKEGYME--KTGPKQTEGFRKRWFTMDDRRLMYFKDPLDAF---------ARGEVFIGSKESGYTVLHGFPPSTQ 333 (386)
T ss_dssp SSCCCSEEEEEE--ECCTTSCSCCEEEEEEEETTEEEEESSTTCSB---------CSEEEECCCGGGTCEEEESCCTTCC
T ss_pred cccccceeeeEE--EECCCCCCCCcccEEEEECCEEEEEecCCCcc---------cceEEEeecceeeeeecccCCcccc
Confidence 356689999776 677666 8999999999999999999988764 3444555443321 1111 1
Q ss_pred ---CceeEEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002837 87 ---KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (875)
Q Consensus 87 ---Kk~~fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~~ 126 (875)
.+++|.|... +|+|+|+|+|++|+++||.||+.++.+
T Consensus 334 ~~~~~~~F~I~t~---~rty~l~A~s~~e~~~Wi~aL~~~i~~ 373 (386)
T 3lju_X 334 GHHWPHGITIVTP---DRKFLFACETESDQREWVAAFQKAVDR 373 (386)
T ss_dssp SCCSCEEEEEECS---SCEEEEEESSHHHHHHHHHHHHHHHHS
T ss_pred ccCCCcEEEEEeC---CeEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 1578877643 499999999999999999999999974
No 72
>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A*
Probab=99.38 E-value=4.3e-13 Score=143.27 Aligned_cols=103 Identities=22% Similarity=0.312 Sum_probs=69.7
Q ss_pred CCCCCCceEEEeeeeeeccCCCCCCcEEEEEEEeCC-------eeeEecCCCCCCCCCCceeeeeeCceEeCCCcceee-
Q 002837 12 RPGASNTVFKSGPLFISSKGIGWKSWKKRWFILTRT-------SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV- 83 (875)
Q Consensus 12 ~~~~s~~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~-------~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~- 83 (875)
.+.....++++|||+ |+ +.||+|||||+++ .|+||+++.+..... ..+.+.|+|..+..|..
T Consensus 3 ~~~~~~~v~k~G~L~--K~----K~WkkRwFVL~~~~~~G~~~~L~YYk~~~~~~~~~----~~p~g~I~L~~~~~V~~~ 72 (264)
T 1qqg_A 3 ESDGFSDVRKVGYLR--KP----KSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKS----SAPKRSIPLESCFNINKR 72 (264)
T ss_dssp ------CEEEEEEEE--CT----TTCCEEEEEEECCBTTTBSSEEEEESSHHHHHTTC----SCCSEEEEGGGEEEEEEE
T ss_pred CCCCCCCccEEEEEE--EC----CCCEeEEEEEECCCCCCCCCEEEEECCCccccccc----cCcceEEEeeceEEEEec
Confidence 345567899999877 44 6899999999998 999999887610000 00344466655444422
Q ss_pred -ccCCceeEEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHhhC
Q 002837 84 -REDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (875)
Q Consensus 84 -~~~Kk~~fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~~a 127 (875)
...++++|.|... +++|+|+|+|++|+++|+.+|+.++...
T Consensus 73 ~~~~~~~~F~I~t~---~rty~l~A~se~e~~~Wi~aL~~~~~~~ 114 (264)
T 1qqg_A 73 ADSKNKHLVALYTR---DEHFAIAADSEAEQDSWYQALLQLHNRA 114 (264)
T ss_dssp CCSSCSSEEEEEES---SCEEEEECSSHHHHHHHHHHHHHHC---
T ss_pred cCCCCCcEEEEEEC---CEEEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 2355678877643 5999999999999999999999998643
No 73
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=99.34 E-value=2.5e-12 Score=137.39 Aligned_cols=104 Identities=16% Similarity=0.255 Sum_probs=72.3
Q ss_pred eEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcc--eeeccCCceeEEEEcC
Q 002837 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGS--VVVREDKKLLTVLFPD 96 (875)
Q Consensus 19 V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~s--V~~~~~Kk~~fiIt~~ 96 (875)
..++|||| |+|...+.|++|||||+++.|+||++..+..+.+. ...+.+.++.+..... ......+++||.|.+.
T Consensus 168 p~~~G~L~--k~~~~~k~WkkR~fvL~~~~L~yyk~~~~~~~~~~-i~l~~l~~~~v~~~~~~~~~~~~~~~~~F~i~~~ 244 (291)
T 3tca_A 168 PELEGALY--LKEDGKKSWKRRYFLLRASGIYYVPKGKTKTSRDL-ACFIQFENVNIYYGIQCKMKYKAPTDHCFVLKHP 244 (291)
T ss_dssp CCCEEEEE--EECTTSSCEEEEEEEECSSEEEECCTTCCSSTTTC-EEEEEGGGCEEEEECSHHHHHCCSSSCEEEEECT
T ss_pred CceEEEEE--EeCCCCCCceEEEEEEeCCEEEEEecCccccccCc-eeeccceeEEEEecCccccccCCCCCeEEEEEcC
Confidence 46899888 56666899999999999999999999887754331 1112223332221111 0112356789988653
Q ss_pred C---CCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002837 97 G---RDGRAFTLKAETSEDLYEWKTALELALA 125 (875)
Q Consensus 97 ~---~~gRty~LqAdTeeE~~eWv~AI~~al~ 125 (875)
. ...++|+|+|+|++++..||.||+.|..
T Consensus 245 ~~~~~~~~~~~l~A~s~~e~~~Wi~air~Ak~ 276 (291)
T 3tca_A 245 QIQKESQYIKYLCCDDARTLSQWVMGIRIAKY 276 (291)
T ss_dssp TCCSCCTTSEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCceEEEEECCCHHHHHHHHHHHHHHhc
Confidence 2 2347899999999999999999998863
No 74
>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=99.26 E-value=7e-12 Score=118.18 Aligned_cols=104 Identities=14% Similarity=0.290 Sum_probs=68.0
Q ss_pred EEeeeeeeccCCCCC-CcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCce-EeCC--Ccceeec--cCCceeEEEE
Q 002837 21 KSGPLFISSKGIGWK-SWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGI-DLNN--SGSVVVR--EDKKLLTVLF 94 (875)
Q Consensus 21 KeG~L~l~KkG~~~k-sWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I-~L~~--~~sV~~~--~~Kk~~fiIt 94 (875)
.+|||.+.|+|+.++ .|++|||||+++.|+||+++.+.. ...+...|++..+ .+.. ...++.. .+..++|.|+
T Consensus 3 ~eGwl~~pk~~~~~k~~Wkkr~~vL~~~kL~~y~~~~~~~-~~~p~~~Idl~~~~~V~~V~~~d~i~~~~~~~p~iF~I~ 81 (117)
T 2rov_A 3 LEGWLSLPVRNNTKKFGWVKKYVIVSSKKILFYDSEQDKE-QSNPYMVLDIDKLFHVRPVTQTDVYRADAKEIPRIFQIL 81 (117)
T ss_dssp SEEEEECCCCSSSSCCCCCEEEEEEETTEEEEESCHHHHH-TTCCSEEECGGGEEEEEECCTTTCSSSCTTTGGGEEEEE
T ss_pred eEEEEEeecCCCccCCCcEEEEEEEECCEEEEEECCCCcc-cCCceEEEECcccEEEEEcccccccccccccCCcEEEEE
Confidence 489888767877777 999999999999999999865420 0011122333221 1111 1111111 2245678775
Q ss_pred cCC---CCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002837 95 PDG---RDGRAFTLKAETSEDLYEWKTALELALA 125 (875)
Q Consensus 95 ~~~---~~gRty~LqAdTeeE~~eWv~AI~~al~ 125 (875)
... ...++|||.|+|++|+++||.+|+.++.
T Consensus 82 ~~~~~~~~~~~l~l~A~s~~e~~~WV~aL~~~i~ 115 (117)
T 2rov_A 82 YANEGISSAKNLLLLANSTEEQQKWVSRLVKKIP 115 (117)
T ss_dssp ECSSSSTTCEEEEEECSSHHHHHHHHHHHHHHCT
T ss_pred eCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHhc
Confidence 432 3358999999999999999999998874
No 75
>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; beta-barrel, hydrolase; NMR {Rattus norvegicus} SCOP: b.55.1.1
Probab=99.25 E-value=2.4e-11 Score=118.57 Aligned_cols=104 Identities=14% Similarity=0.296 Sum_probs=72.0
Q ss_pred EEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCC---------CC----C------------CCCc----------
Q 002837 20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPS---------AL----P------------QRGG---------- 64 (875)
Q Consensus 20 ~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~---------~~----p------------~~~~---------- 64 (875)
+|+||||+ ++...+.|++|||||+++.|+|++.... .. + ....
T Consensus 2 ~k~G~L~~--~~~~~~~w~~~~fvL~~~~L~y~~e~s~~~~~~~~e~~~~~~~~~~~~~~~n~~fh~~~~~~~e~~~~~l 79 (150)
T 2fjl_A 2 IKNGILYL--EDPVNHEWYPHYFVLTSSKIYYSEETSSDQGNEDEEEPKEASGSTELHSSLEVLFQGPNPAILEPEREHL 79 (150)
T ss_dssp CEEEEEEE--EETTTTEEEEEEEEEETTEEEECCCCSCSSCCSCCCCSCCCCCSCCCCCCSSSGGGSSCSTTSCTTCSSS
T ss_pred CcceEEEe--ecCCCCCceEeEEEEECCEEEEEeeccccccccCcccccccCCchhhcccchhccccCCccccchhHhcc
Confidence 68998884 4566789999999999999999982221 10 0 0000
Q ss_pred -----eeeeeeCceEeCCCcceee---ccCCceeEEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002837 65 -----EVNLTLGGIDLNNSGSVVV---REDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (875)
Q Consensus 65 -----e~~i~Lg~I~L~~~~sV~~---~~~Kk~~fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~ 125 (875)
-..+..|.|+|..+.-... +..++++|.|.+...+.++|+|.|+|.++|.+||.||+.|+.
T Consensus 80 ~E~~~lG~l~kG~IdL~gc~V~~~~~~~~~~~~vF~I~~~~~~~~~~~laAds~Eem~dW~kaIreaa~ 148 (150)
T 2fjl_A 80 DENSPLGDLLRGVLDVPACQIAIRPEGKNNRLFVFSISMPSVAQWSLDVAADSQEELQDWVKKIREVAQ 148 (150)
T ss_dssp CTTTTTTTCCCEEECSTTCEEEEETTCSSSCSCEEEEECTTTSSCCEEEEESSHHHHHHHHHHHHHHHT
T ss_pred cccccccccccceEecCccEEEeccCCCCCCceEEEEeCCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Confidence 0011134455555432212 235778999887665678999999999999999999999975
No 76
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=99.24 E-value=7.8e-12 Score=140.38 Aligned_cols=95 Identities=15% Similarity=0.260 Sum_probs=68.1
Q ss_pred eEEEeeeeeeccCCCCCCcEEEEEEE--eCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCccee--eccCCceeEEEE
Q 002837 19 VFKSGPLFISSKGIGWKSWKKRWFIL--TRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV--VREDKKLLTVLF 94 (875)
Q Consensus 19 V~KeG~L~l~KkG~~~ksWKKRWFVL--~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~--~~~~Kk~~fiIt 94 (875)
.+|+|||| |+|+..+.|++||||| +++.|+||+++.+.. +.|.|.|.....+. ....+.++|.|.
T Consensus 146 ~~keG~L~--KrG~~~k~WkrRwFVL~~~~~~L~Yy~~~~~~~---------p~g~I~L~~~~~~~~~~~~~~~~~f~I~ 214 (386)
T 3lju_X 146 GYREGFLW--KRGRDNGQFLSRKFVLTEREGALKYFNRNDAKE---------PKAVMKIEHLNATFQPAKIGHPHGLQVT 214 (386)
T ss_dssp SEEEEEEE--EECSSSCCEEEEEEEEETTTTEEEEEC-----C---------CSEEEEGGGEEEEECHHHHTSTTCEEEE
T ss_pred ccccccee--eeccccCCceEEEEEEEcCCCEEEEECCCCccC---------cccEEEeeccEEEEcccccCCCceEEEE
Confidence 58999887 7787789999999999 899999999987765 33445554432222 123567777764
Q ss_pred -cCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 002837 95 -PDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (875)
Q Consensus 95 -~~~~~gRty~LqAdTeeE~~eWv~AI~~al 124 (875)
..+...|+|+|+|+|.+++.+|+.+|+.+.
T Consensus 215 ~~~~~~~R~y~l~A~s~~e~~~Wi~aIr~a~ 245 (386)
T 3lju_X 215 YLKDNSTRNIFIYHEDGKEIVDWFNALRAAR 245 (386)
T ss_dssp EEETTEEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred EecCCCceEEEEEcCCHHHHHHHHHhhhhcc
Confidence 223446999999999999999999999874
No 77
>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus}
Probab=99.18 E-value=3.4e-11 Score=129.26 Aligned_cols=106 Identities=24% Similarity=0.339 Sum_probs=70.8
Q ss_pred CCCceEEEeeeeee-----ccC-----CCCCCcEEEEEEEeCCeeeEecCCCCCCCC--CCceeeeeeCceEeCCCccee
Q 002837 15 ASNTVFKSGPLFIS-----SKG-----IGWKSWKKRWFILTRTSLVFFKNDPSALPQ--RGGEVNLTLGGIDLNNSGSVV 82 (875)
Q Consensus 15 ~s~~V~KeG~L~l~-----KkG-----~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~--~~~e~~i~Lg~I~L~~~~sV~ 82 (875)
....|.|+|||..+ +++ ...+.|+++||||+++.|+||++....... ..+...|.+.++.+..+.
T Consensus 7 ~~~~v~k~G~L~rK~~l~~~k~~K~~~~~~r~Wkk~w~VLkg~~L~fYKde~~~~~~~~~~p~~~I~L~ga~v~~a~--- 83 (279)
T 3a8n_A 7 AQGTVRKAGALAVKNFLVHKKNKKVESATRRKWKHYWVSLKGCTLFFYETDGRSGIDHNSVPKHAVWVENSIVQAVP--- 83 (279)
T ss_dssp ---CCSCEEEEEEEEEEEEETTTEEECCCCCCCEEEEEEEETTEECCBCCC--------CCCSSCCBCCSCEECCCT---
T ss_pred cCCceeEEEEEEEEEEecccCCcccCCccCCCCeEEEEEEeCCEEEEEecccccccccccCCCceEeccCcEEEecc---
Confidence 34568999999743 211 136899999999999999999998753210 112223444444443221
Q ss_pred eccCCceeEEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002837 83 VREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (875)
Q Consensus 83 ~~~~Kk~~fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~ 125 (875)
...+++++|.|.. .+|++|+|+|++.+||+.|+.+|+.++.
T Consensus 84 d~~kKk~vF~L~t--~~g~~yLFQA~s~eEm~~WI~aI~~a~~ 124 (279)
T 3a8n_A 84 EHPKKDFVFCLSN--SLGDAFLFQTTSQTELENWITAIHSACA 124 (279)
T ss_dssp TSSSSCSCCCEEE--TTTEEEECCCSCHHHHHHHHHHHHHHHH
T ss_pred ccCCCCcEEEEEc--CCCCEEEEeCCCHHHHHHHHHHHHHHHh
Confidence 1245677887764 3689999999999999999999999875
No 78
>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.14 E-value=1.3e-10 Score=111.65 Aligned_cols=101 Identities=19% Similarity=0.324 Sum_probs=71.6
Q ss_pred EEEeeeeeec-cCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEEE-EcCC
Q 002837 20 FKSGPLFISS-KGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVL-FPDG 97 (875)
Q Consensus 20 ~KeG~L~l~K-kG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiI-t~~~ 97 (875)
..++||-+.+ ++..+|.||+|||||+++.|+|||+..+.. +.+...|.|.+|.+.+..++ ..++|+|.+ .|..
T Consensus 10 el~~~l~~~~pkk~tlK~~KrrWFvlk~~~L~YyK~kee~~--~ePig~I~L~gceV~pd~~~---~~~kf~ikl~iPs~ 84 (137)
T 2ys3_A 10 ELKDHLRIFRPRKLTLKGYRQHWVVFKETTLSYYKSQDEAP--GDPIQQLNLKGCEVVPDVNV---SGQKFCIKLLVPSP 84 (137)
T ss_dssp CEECCCEECCTTSCCSSSSCCCEEEECSSCEEEESSTTTTT--SCCSCCBCTTTCEEEECCBG---GGTBEEEEEEEECS
T ss_pred chhHHHHhhCccccccccceeEEEEEeCCEEEEECCchhcc--CCCceEEECCCCEEeccccc---cCCceEEEEEccCC
Confidence 4668665432 345588999999999999999999988762 22223355666665543222 356776644 4433
Q ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002837 98 RDGRAFTLKAETSEDLYEWKTALELALA 125 (875)
Q Consensus 98 ~~gRty~LqAdTeeE~~eWv~AI~~al~ 125 (875)
...++|+|.|+|++++.+||+|++.|..
T Consensus 85 ~g~r~y~l~cdsEeqy~~WMaA~rlAsk 112 (137)
T 2ys3_A 85 EGMSEIYLRCQDEQQYARWMAGCRLASK 112 (137)
T ss_dssp SSEEEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred CCceEEEEECCCHHHHHHHHHHHHHhcc
Confidence 3458999999999999999999998864
No 79
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=99.14 E-value=7.6e-11 Score=133.16 Aligned_cols=104 Identities=21% Similarity=0.340 Sum_probs=70.9
Q ss_pred CceEEEeeeeeeccCCCCCCcEEEEEEEe-CCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEEEE-
Q 002837 17 NTVFKSGPLFISSKGIGWKSWKKRWFILT-RTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLF- 94 (875)
Q Consensus 17 ~~V~KeG~L~l~KkG~~~ksWKKRWFVL~-~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiIt- 94 (875)
..|+|+|||+ |+|+.++.||+|||||+ ++.|+|||+.+...+.+ .+++..+.+..+..+.....+.++|.|.
T Consensus 4 ~~v~keG~L~--K~g~~~k~Wk~r~fvL~~~~~l~yyk~~~~~~~~~----~i~l~~~~~~~~~~~~~~~~~~~~f~I~~ 77 (446)
T 4ejn_A 4 VAIVKEGWLH--KRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQR----EAPLNNFSVAQCQLMKTERPRPNTFIIRC 77 (446)
T ss_dssp CCEEEEEEEE--EEETTTTEEEEEEEEEETTSBEEEESSCC-----------CCCGGGBCTTCEEEEECSSSTTEEEEEE
T ss_pred ceEEEEeeEE--eeccccccccceEEEEeeCCEEEEEecCCCCCccC----cccccCccccceeecCCCCCCCceeEEEc
Confidence 4699999776 77888999999999998 89999999998765322 2344444444333222334456677764
Q ss_pred cCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002837 95 PDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (875)
Q Consensus 95 ~~~~~gRty~LqAdTeeE~~eWv~AI~~al~~ 126 (875)
+........+|++++.+++.+|+.||+.++..
T Consensus 78 ~~~~~~~~r~~~~~~~ee~e~W~~ai~~~i~~ 109 (446)
T 4ejn_A 78 LQWTTVIERTFHVETPEEREEWTTAIQTVADG 109 (446)
T ss_dssp EETTEEEEEEEECSSHHHHHHHHHHHHHHCCC
T ss_pred CCCceeeeeEEecCCHHHHHHHHHHHHhhhhh
Confidence 33222234489999999999999999999753
No 80
>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.05 E-value=1.2e-09 Score=103.25 Aligned_cols=102 Identities=17% Similarity=0.136 Sum_probs=70.1
Q ss_pred CCCceEEEeeeeeeccCCCCCCcEEEEEEEeCC------eeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeecc---
Q 002837 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRT------SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE--- 85 (875)
Q Consensus 15 ~s~~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~------~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~--- 85 (875)
-...++|+||||+.-.+...+.|+||||||.+. .|-||...........+ .+.|.|..|.+|....
T Consensus 8 m~e~~vk~G~L~~q~q~~fgkKWrk~w~vLy~~S~~GvaRLE~yd~~ek~~r~~~~-----rrVIrLsdCisV~~~~~e~ 82 (127)
T 2d9w_A 8 MGDGAVKQGFLYLQQQQTFGKKWRRFGASLYGGSDCALARLELQEGPEKPRRCEAA-----RKVIRLSDCLRVAEAGGEA 82 (127)
T ss_dssp SCCCSSEEEEEEECBCSSSSCBCCEEEEEEECCSSSSCCEEEEECCCSCSSSCSCC-----EEEECGGGEEEEEECCSCS
T ss_pred ccCccccceEEEecccchhhhhhheeEEEEecCCCCCceeeeeeeccCccccCCCC-----ceEEEhhhCCeEecccCcc
Confidence 345689999999998744445699999999875 58899987665322222 2345555544443322
Q ss_pred ---CCceeEEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002837 86 ---DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (875)
Q Consensus 86 ---~Kk~~fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~ 125 (875)
+..+.|.|.+. .++|+|.|++ .++.+|+.+|..+.-
T Consensus 83 ~~pk~~~aF~l~T~---er~~~laAe~-~E~~~Wi~~ic~~aF 121 (127)
T 2d9w_A 83 SSPRDTSAFFLETK---ERLYLLAAPA-AERGDWVQAICLLAF 121 (127)
T ss_dssp SSCSSCEEEEEEES---SCEEEEEECH-HHHHHHHHHHHHHHT
T ss_pred CCCCcceEEEEEeC---CcEEEEEeCc-HHHHHHHHHHHHHhc
Confidence 23345555433 3999999996 499999999998763
No 81
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=99.01 E-value=1.2e-09 Score=115.92 Aligned_cols=106 Identities=22% Similarity=0.192 Sum_probs=72.9
Q ss_pred CceEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcc--eeeccCCceeEEEE
Q 002837 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGS--VVVREDKKLLTVLF 94 (875)
Q Consensus 17 ~~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~s--V~~~~~Kk~~fiIt 94 (875)
.....+||||++. .+.+.|+||||+|+++.|+||+...... .+.-...+.+.++++-.... -..+..+.+||.|.
T Consensus 130 ~~P~~~G~L~~ke--~~~K~WkkRyfvLr~sgLy~~~k~~sk~-~r~l~~~~~L~~~~vy~~~~~kKk~kaPt~~~F~ik 206 (256)
T 3hk0_A 130 SSPEIQGFLHVKE--LGKKSWKKLYVCLRRSGLYCSTKGTSAA-PRHLQLLADLEDSNIFSLIAGRKQYNAPTDHGLCIK 206 (256)
T ss_dssp SCEEEEEEEEEEC--TTSSCEEEEEEEEETTEEEEESSTTCCC-GGGEEEEECCTTEEEEEESSTHHHHCCSSSEEEEEE
T ss_pred CCCcceeEEEEec--CCCCcceEEEEEEeCCEEEEEecCCCCc-cccceEEEEcCCCEEEEecccccccCCCCCCEEEEE
Confidence 3457899998554 4468999999999999999999765432 11112224556555543221 11134557899987
Q ss_pred cCCC---CCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002837 95 PDGR---DGRAFTLKAETSEDLYEWKTALELALA 125 (875)
Q Consensus 95 ~~~~---~gRty~LqAdTeeE~~eWv~AI~~al~ 125 (875)
+... ....|||+|++++++..|+.||+.|..
T Consensus 207 ~~k~~~~~~~~~~lcaede~~~~~W~~aIr~ak~ 240 (256)
T 3hk0_A 207 PNKVRNETKELRLLCAEDEQTRTSWMTAFRLLKY 240 (256)
T ss_dssp ETTCSSCCTTCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred cccccCCCceEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 6432 234799999999999999999999875
No 82
>4bbk_A Kindlin-1, fermitin family homolog 1; PH domain, cell adhesion; 2.10A {Mus musculus}
Probab=98.94 E-value=2.3e-09 Score=104.42 Aligned_cols=101 Identities=22% Similarity=0.281 Sum_probs=71.0
Q ss_pred EEEeeeee-eccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEEEEcCCC
Q 002837 20 FKSGPLFI-SSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGR 98 (875)
Q Consensus 20 ~KeG~L~l-~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiIt~~~~ 98 (875)
...|||-+ +.++...|.||+||||++++.|+|||++.+.. +.+...+.|.||.+.+..+| ...||.+.+.....
T Consensus 27 eL~dyLk~~~pkrltLKgfKryWfv~kDt~LsyYKSkEe~~--geP~~~inLrGCEVtPDVnv---a~~Kf~ikL~ip~~ 101 (165)
T 4bbk_A 27 KLADYLKLFRPKKLMLKACKQYWFVFKDTSIAYFKNKELEQ--GEPIEKLNLRGCEIVPDVNV---SGRKFGIKLLIPVA 101 (165)
T ss_dssp CEEEEEEEEC-------CCEEEEEEEETTEEEEESSGGGTT--SCCSEEEECTTCEEEEEEET---TTTEEEEEEEEEET
T ss_pred hhHhHHHhhcccccccccceeEEEEEeCCEEEEEcCHHHhc--CCCceEEecCccEEeccccc---ccceeeEEEecCCC
Confidence 35587743 33566789999999999999999999998864 44556677888877753332 45677665533333
Q ss_pred -CCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002837 99 -DGRAFTLKAETSEDLYEWKTALELALA 125 (875)
Q Consensus 99 -~gRty~LqAdTeeE~~eWv~AI~~al~ 125 (875)
....++|.|+|+.+..+||.|++-|..
T Consensus 102 ~gm~e~~LrcdsE~QYa~WMAAcrLAsk 129 (165)
T 4bbk_A 102 DGMNEVYLRCDHEDQYARWMAACILASK 129 (165)
T ss_dssp TEEEEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred CcceeeeeecCCHHHHHHHHHHhhhccc
Confidence 346999999999999999999998864
No 83
>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin activation, cytoplas membrane, cell adhesion; HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A*
Probab=98.93 E-value=3.1e-09 Score=104.63 Aligned_cols=101 Identities=17% Similarity=0.285 Sum_probs=75.6
Q ss_pred EEEeeeee-eccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEEE-EcCC
Q 002837 20 FKSGPLFI-SSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVL-FPDG 97 (875)
Q Consensus 20 ~KeG~L~l-~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiI-t~~~ 97 (875)
...+||-+ +.++...|.||+||||++++.|+|||++.+.. +.+...+.|.||.+.+..+| ...||++.+ .|..
T Consensus 48 eL~dyLk~~~pk~~tLKgyKryWFv~kd~~LsyYKskEe~~--geP~~~I~LrGCEVtpDVnv---a~~Kf~IkL~vP~~ 122 (173)
T 4f7h_A 48 ELADYIKVFKPKKLTLKGYKQYWCTFKDTSISCYKSKEESS--GTPAHQMNLRGCEVTPDVNI---SGQKFNIKLLIPVA 122 (173)
T ss_dssp CEEEEEEEECCBTTBCCCCEEEEEEEETTEEEEESCGGGCS--SCCSEEEECTTCEEEEEEET---TTTEEEEEEEEEET
T ss_pred hhHhHHHhhcchhcccccceeEEEEEeCCEEEEEcCHhHhc--CCCceEEecCceEEeccccc---cccceeEEEeccCC
Confidence 35587743 34566789999999999999999999988863 44556678888887764332 455664443 3433
Q ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002837 98 RDGRAFTLKAETSEDLYEWKTALELALA 125 (875)
Q Consensus 98 ~~gRty~LqAdTeeE~~eWv~AI~~al~ 125 (875)
.....|+|.|+|+..+.+||.|++-|..
T Consensus 123 ~gm~e~~Lrcd~E~qya~WMAAcrLAsk 150 (173)
T 4f7h_A 123 EGMNEIWLRCDNEKQYAHWMAACRLASK 150 (173)
T ss_dssp TEEEEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred CCcceeeeecCCHHHHHHHHHHhhhhcc
Confidence 3467999999999999999999998865
No 84
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=98.92 E-value=2.2e-09 Score=115.44 Aligned_cols=105 Identities=19% Similarity=0.284 Sum_probs=68.2
Q ss_pred ceEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcce--eeccCCceeEEEEc
Q 002837 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSV--VVREDKKLLTVLFP 95 (875)
Q Consensus 18 ~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV--~~~~~Kk~~fiIt~ 95 (875)
...++||||++ +.+.+.|+||||+|+++.|+||+..+...+ ......+.+.++++-..... ..+..+.+||.|.+
T Consensus 157 ~pe~~G~L~~k--~~~~k~WkkRyfvLr~sgLyy~~K~~sk~~-r~l~~l~~L~~~~VY~~~~~kkk~kaPt~~~F~ik~ 233 (281)
T 4gmv_A 157 VPEIEGVLWLK--DDGKKSWKKRYFLLRASGIYYVPKGKAKVS-RDLVCFLQLDHVNVYYGQDYRNKYKAPTDYCLVLKH 233 (281)
T ss_dssp CCCCEEEEEEE--CTTSSCEEEEEEEECSSCEEEC----------CCEEEECGGGCEEEEESSHHHHTCCSCSCEEEEEC
T ss_pred CCccEEEEEEE--CCCCCCCeEEEEEEeCCEEEEEeCCCCCcc-ccceEEEEcCCcEEEEecccccccCCCCCcEEEEec
Confidence 34689988844 444589999999999999999987654322 21222345555444432211 12346688999975
Q ss_pred CC---CCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002837 96 DG---RDGRAFTLKAETSEDLYEWKTALELALA 125 (875)
Q Consensus 96 ~~---~~gRty~LqAdTeeE~~eWv~AI~~al~ 125 (875)
.. ....+|+|+|++++++..|+.||+-+..
T Consensus 234 ~~~~~~~~~~~~~caede~~~~~Wv~Air~ak~ 266 (281)
T 4gmv_A 234 PQIQKKSQYIKYLCCDDVRTLHQWVNGIRIAKY 266 (281)
T ss_dssp TTCCSCCTTCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CccCCCCCceEEEEeCCHHHHHHHHHHHHHHhh
Confidence 32 2346899999999999999999998865
No 85
>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase, PKB, pleckstrin homology domain, inositol phosphate, signal transduction; HET: 4PT; 1.45A {Homo sapiens} SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A
Probab=98.80 E-value=1.3e-08 Score=99.44 Aligned_cols=94 Identities=20% Similarity=0.298 Sum_probs=71.5
Q ss_pred CCCCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEEE
Q 002837 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVL 93 (875)
Q Consensus 14 ~~s~~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiI 93 (875)
.....|++.|+|++. +|. .|++|||+|+.+.+.||-++.... ..|.|.++....|....++ .|++.
T Consensus 47 ~~ge~Ilk~G~v~Kr-kGl---~~kkR~liLT~~PrL~Yvdp~~~~---------~KGeIpls~~l~ve~k~~~-~F~I~ 112 (151)
T 1w1g_A 47 VENNLILKMGPVDKR-KGL---FARRRQLLLTEGPHLYYVDPVNKV---------LKGEIPWSQELRPEAKNFK-TFFVH 112 (151)
T ss_dssp TTTCCEEEEEEEEEE-ETT---EEEEEEEEEETTTEEEEEETTTTE---------EEEEECCCTTCEEEESSSS-EEEEE
T ss_pred CCCCcEEEEEEEEec-ccC---cceeEEEEEcCCceEEEEcCcccc---------ccceEecCCCeeEEEcCCC-EEEEE
Confidence 356789999988844 343 399999999999888888877653 5566888877666555533 34455
Q ss_pred EcCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002837 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (875)
Q Consensus 94 t~~~~~gRty~LqAdTeeE~~eWv~AI~~al~~ 126 (875)
++ +|+|+|.+. ...+.+|++||+.++..
T Consensus 113 Tp----~RtY~~~d~-~~~AqeWv~aI~~~~~~ 140 (151)
T 1w1g_A 113 TP----NRTYYLMDP-SGNAHKWCRKIQEVWRQ 140 (151)
T ss_dssp ET----TEEEEEECT-TSCHHHHHHHHHHHHHH
T ss_pred CC----CceEEEEcC-ccCHHHHHHHHHHHHHH
Confidence 54 399999997 88999999999999863
No 86
>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.52 E-value=2.9e-07 Score=86.88 Aligned_cols=98 Identities=16% Similarity=0.233 Sum_probs=74.1
Q ss_pred CCCCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeecc--------
Q 002837 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE-------- 85 (875)
Q Consensus 14 ~~s~~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~-------- 85 (875)
..++.++|+| |+...+...+.|||+|++|+..++.||+++.... ....|.|..+-.|....
T Consensus 3 ~~~s~vlkeG--W~VH~t~~d~~rKRHYWrLD~K~Itlf~~e~~~~---------~ykeIpL~eIl~v~~~~~~~~l~~~ 71 (125)
T 2coa_A 3 SGSSGTLREG--WVVHYSNKDTLRKRHYWRLDCKCITLFQNNTTNR---------YYKEIPLSEILTVESAQNFSLVPPG 71 (125)
T ss_dssp CCCCSCSEEE--EEEECCSSSCCCEEEEEEECSSEEEEESSSSCSS---------CSEEEETTTCCEEEESCCCSSSCTT
T ss_pred CCCCceeecc--eEEEEccCCccccceeeEecCCeEEEEecCCCCc---------eeeeeehhHeecccccccccccCCC
Confidence 4577899999 5456777788999999999999999999987764 44456666555543321
Q ss_pred CCceeEEEEcCCCCCceEEEEeC---C--------HHHHHHHHHHHHHHHh
Q 002837 86 DKKLLTVLFPDGRDGRAFTLKAE---T--------SEDLYEWKTALELALA 125 (875)
Q Consensus 86 ~Kk~~fiIt~~~~~gRty~LqAd---T--------eeE~~eWv~AI~~al~ 125 (875)
...+||.|... ..+||++++ . .+.+..|..||+.|+.
T Consensus 72 ~~~hcFEi~T~---~~~yyVg~~~~~~p~~~sg~g~~~a~~W~~aIrqALm 119 (125)
T 2coa_A 72 TNPHCFEIVTA---NATYFVGEMPGGTPGGPSGQGAEAARGWETAIRQALM 119 (125)
T ss_dssp SCCEEEEEECS---SCCCCEECCSCCCSSSCCCCCSHHHHHHHHHHHHHGG
T ss_pred CCCceEEEEeC---CeEEEEccCCCCCCCCcCccccHHHHHHHHHHHhhcc
Confidence 23479988754 489999984 1 3679999999999986
No 87
>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.45 E-value=1.2e-06 Score=83.01 Aligned_cols=98 Identities=15% Similarity=0.197 Sum_probs=71.5
Q ss_pred CCCCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeec--------c
Q 002837 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR--------E 85 (875)
Q Consensus 14 ~~s~~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~--------~ 85 (875)
..++.|+|+||+- ..+..-+.|||+|++|+..++.+|+++.... ....|.|..+-.|... .
T Consensus 3 ~~~s~vlkeGWmV--H~t~~d~~rKRHYWrLD~K~Itlf~~e~~~k---------~ykeIpLseIL~v~~~~~~~~~~~~ 71 (129)
T 2d9z_A 3 SGSSGMVKEGWMV--HYTSRDNLRKRHYWRLDSKCLTLFQNESGSK---------YYKEIPLSEILRISSPRDFTNISQG 71 (129)
T ss_dssp SCCTTSEEEEEEE--EEESSCCCCEEEEEEEESSCEEEESCSSCCS---------CCCEECTTTCCEECCTTCCCCSSSC
T ss_pred CCCCceeecceEE--EEccCCccccceeeEecCCeEEEEecCCCCc---------eeceeeHHHhcccccccCccccCCC
Confidence 4578899999654 5555567899999999999999999987654 3333444444333222 1
Q ss_pred CCceeEEEEcCCCCCceEEEEeCC---------------HHHHHHHHHHHHHHHh
Q 002837 86 DKKLLTVLFPDGRDGRAFTLKAET---------------SEDLYEWKTALELALA 125 (875)
Q Consensus 86 ~Kk~~fiIt~~~~~gRty~LqAdT---------------eeE~~eWv~AI~~al~ 125 (875)
...+||.|... ..+||+.++. .+.+..|..||+.|+.
T Consensus 72 ~~phcFEi~T~---~~~y~Vge~~~~~~~~~~~~~sg~g~~~a~~We~aIrqALm 123 (129)
T 2d9z_A 72 SNPHCFEIITD---TMVYFVGENNGDSSHNPVLAATGVGLDVAQSWEKAIRQALM 123 (129)
T ss_dssp SCCCSEEEECS---SCEEEECBCCSCCSCCTTTTTTTCBHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEEC---CEEEEEccCCCCCCCCccccccccchHHHHHHHHHHHHhcc
Confidence 23378988753 5899998853 7899999999999986
No 88
>1v5m_A SH2 and PH domain-containing adapter protein APS; adaptor protein, pleckstrin homology domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=97.90 E-value=0.00016 Score=68.75 Aligned_cols=106 Identities=20% Similarity=0.332 Sum_probs=70.3
Q ss_pred CCCCceEEEeee-eeecc-----CCCCCCcEEEEEEEeCC------eeeEecCCCCCCCCCCceeeeeeCce-EeCCCcc
Q 002837 14 GASNTVFKSGPL-FISSK-----GIGWKSWKKRWFILTRT------SLVFFKNDPSALPQRGGEVNLTLGGI-DLNNSGS 80 (875)
Q Consensus 14 ~~s~~V~KeG~L-~l~Kk-----G~~~ksWKKRWFVL~~~------~L~YYKd~~~~~p~~~~e~~i~Lg~I-~L~~~~s 80 (875)
...-.+.|||.| |+... ......|.|+|++|+.. .|-||..++..+|+.+ +++..| ++...+.
T Consensus 13 ~~~~e~~kEG~l~~~~~~~~~~~~~~~~~W~k~RLvL~k~g~G~~y~LEfy~PPkssKpK~~----i~cs~I~EVR~tt~ 88 (136)
T 1v5m_A 13 VELVDIQREGALRFMVADDAASGPGGTAQWQKCRLLLRRAVAGERFRLEFFVPPKASRPKVS----IPLSAIIEVRTTMP 88 (136)
T ss_dssp CCSCSCCEEEEEEEEECSCCCSSSCCSCCCEEEEEEEEECSSSCCEEEEEESSTTSSSCSSC----EETTTCCBCCCCCC
T ss_pred cccceeeeeeeeeeecccccccccCcccchhheeeEEEEccCCCceEEEEecCCcccCCccc----cchhhhhhhhhccc
Confidence 445678999977 43321 23467899999999752 4778887777664432 222222 2222221
Q ss_pred eeeccCCceeEEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002837 81 VVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (875)
Q Consensus 81 V~~~~~Kk~~fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~~ 126 (875)
. .-.++-+.|++.. .++..|+|.|.++.+|+.|+..|+..+..
T Consensus 89 L-EmPD~~nTFVlK~--~n~~eyi~ea~d~~q~~sWla~Ir~C~~~ 131 (136)
T 1v5m_A 89 L-EMPEKDNTFVLKV--ENGAEYILETIDSLQKHSWVADIQGCVDS 131 (136)
T ss_dssp S-SSCCCTTEECCBC--TTSCBEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred c-ccCCccceEEEEe--cCCcEEEEEcCCHHHHHHHHHHHHhhcCC
Confidence 1 1135667788864 44669999999999999999999988763
No 89
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Probab=97.38 E-value=0.00014 Score=75.57 Aligned_cols=40 Identities=25% Similarity=0.616 Sum_probs=33.7
Q ss_pred CceEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCC
Q 002837 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSA 58 (875)
Q Consensus 17 ~~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~ 58 (875)
+.+.++|||+ |+|+..++|++|||||+++.|.||+.....
T Consensus 19 ~~~~~~g~l~--~~~~~~~~w~~rw~vl~~~~~~~~~~~~~~ 58 (228)
T 3tfm_A 19 GSPYFHSFLY--MNGGLMNSWKRRWCVLKDETFLWFRSKQEA 58 (228)
T ss_dssp --CCEEEEEE--ECCTTTCCCEEEEEEEETTEEEEESSCCCS
T ss_pred CCCceEEEEe--ecCcccccceEEEEEEeCCEEEEeccCCCc
Confidence 4568899777 778889999999999999999999977654
No 90
>3ml4_A Protein DOK-7; tyrosine phosphorylation, adapter protein, dimerization, SIG protein; HET: PTR; 2.60A {Mus musculus}
Probab=97.34 E-value=0.00049 Score=70.94 Aligned_cols=98 Identities=21% Similarity=0.401 Sum_probs=62.6
Q ss_pred CceEEEeeeeeeccCCCCCCcEEEEEEEeCC-------eeeEecCCCCCCCCCCceeeeeeCce-EeCCCcceeeccCCc
Q 002837 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRT-------SLVFFKNDPSALPQRGGEVNLTLGGI-DLNNSGSVVVREDKK 88 (875)
Q Consensus 17 ~~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~-------~L~YYKd~~~~~p~~~~e~~i~Lg~I-~L~~~~sV~~~~~Kk 88 (875)
..++.|| +++-+- .|.||+|||||+.- .|..||+.++.........++.|..| -+... ..-+.+.
T Consensus 7 ~~~v~eg--~vk~r~--~KkWk~rw~vlrk~s~~adcl~L~vYkd~~dr~k~~~~KaslsL~~~~GlE~g---~~ldk~s 79 (224)
T 3ml4_A 7 EAALVEG--QVKLRD--GKKWKSRWLVLRKPSPVADCLLMLVYKDKCERSKGLRERSSLTLEDICGLEPA---LPYEGLA 79 (224)
T ss_dssp CCCSEEE--EEEEC-----CCEEEEEEEECSSTTSSCEEEEEESSSHHHHSCCCCSEEEEECCEEEEEEE---EEETTEE
T ss_pred cceeEEE--eeeeec--CCceeeEEEEEEcCCCchheEEEEEEcChhhhhcCCcccceeehHHhcCcccc---ccccCcc
Confidence 3467889 444332 35799999999872 58899998876433333455555543 11111 1113334
Q ss_pred eeE-EEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002837 89 LLT-VLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (875)
Q Consensus 89 ~~f-iIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~ 125 (875)
+.. +|+.+ .+++|.+++.+.+..|...|+..+.
T Consensus 80 ~TlAIIc~d----~~~vLAFds~e~l~~W~~~l~~slG 113 (224)
T 3ml4_A 80 HTLAIICLS----QAVMLGFDSHEAMCAWDTRIRYALG 113 (224)
T ss_dssp EEEEEEESS----CEEEEECSSHHHHHHHHHHHHHHTS
T ss_pred cEEEEEecC----cEEEEEeCCHHHHHHHHHHHhhccC
Confidence 433 44433 6889999999999999999988764
No 91
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens}
Probab=97.19 E-value=0.0015 Score=65.93 Aligned_cols=103 Identities=14% Similarity=0.209 Sum_probs=66.0
Q ss_pred CceEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCC---ceeeeeeCceEeCCCcceeeccCCceeEEE
Q 002837 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRG---GEVNLTLGGIDLNNSGSVVVREDKKLLTVL 93 (875)
Q Consensus 17 ~~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~---~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiI 93 (875)
...+++|.|.++.. .+.|+.+|++|-...|+|-....+.+.-.. ....+.+..+.+... ..+++.+|+|
T Consensus 69 R~Ll~eG~L~~k~~---~~~~~d~~~fLf~D~Ll~~~~~~~ky~~~~~~~~~pvi~L~~~~vre~-----a~d~~~~fli 140 (185)
T 2lg1_A 69 KKLVRDGSVFLKNA---AGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREV-----AHEEKGLFLI 140 (185)
T ss_dssp SCEEEEEEEEEECT---TCCEEEEEEEEESSEEECCEEETTEEECCCCSSSCSEEESSSCEEECC-----SSCSSEEEEE
T ss_pred CceeeeceEEEecc---CCCeeeEEEEeecCEEEEEEecCCEEEEEcccCCCCeEeecceEEecc-----CCCCCeEEEE
Confidence 56899998853322 225899999999998887764322210000 001122333323221 1355667777
Q ss_pred EcCCCCCceEEEEeCCHHHHHHHHHHHHHHHhhC
Q 002837 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (875)
Q Consensus 94 t~~~~~gRty~LqAdTeeE~~eWv~AI~~al~~a 127 (875)
.......+.|.|+|.|..+++.|+.+|+.|+...
T Consensus 141 ~~~~~g~~~yel~a~s~~er~~W~~~I~~Ai~~~ 174 (185)
T 2lg1_A 141 SMGMTDPEMVEVHASSKEERNSWIQIIQDTINTL 174 (185)
T ss_dssp CCSSSCCCCEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred EecCCCCeEEEEEcCCHHHHHHHHHHHHHHHHhC
Confidence 6533335799999999999999999999999754
No 92
>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=97.04 E-value=0.0047 Score=59.19 Aligned_cols=86 Identities=15% Similarity=0.276 Sum_probs=63.5
Q ss_pred cEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEEEEcCCCCCceEEEEeCCHHHHHHH
Q 002837 37 WKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEW 116 (875)
Q Consensus 37 WKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiIt~~~~~gRty~LqAdTeeE~~eW 116 (875)
-+-|||+|-.+.|.|.+...... ...-...+++.++.+..... ....+++|.|+. .....+.+.|.|.+|++.|
T Consensus 44 ~~eR~l~LF~~~Ll~~s~~~~~~-~f~~kgklPL~g~~V~~~ed---~~~~~~aFeI~g--~~~~~i~v~~~s~eE~~~W 117 (132)
T 1v61_A 44 KEERYFLLFSSVLIMLSASPRMS-GFMYQGKIPIAGMVVNRLDE---IEGSDCMFEITG--STVERIVVHCNNNQDFQEW 117 (132)
T ss_dssp CCEEEEEECSSCEEEEECSSSSS-CCEEEEEECTTTCBCSTTCS---SSSSCCCEEEEC--SSSCEEEECCCCSHHHHHH
T ss_pred ceEEEEEEcCCeEEEEEecCCCc-eEEEEEEEecceeEEEeccc---cccCccEEEEec--CCCceEEEEeCCHHHHHHH
Confidence 47899999999999998654211 11123456777777765322 245678999983 4468899999999999999
Q ss_pred HHHHHHHHhhCC
Q 002837 117 KTALELALAQAP 128 (875)
Q Consensus 117 v~AI~~al~~aP 128 (875)
+.+|+.++..+|
T Consensus 118 l~~L~~~i~~~~ 129 (132)
T 1v61_A 118 MEQLNRLTKSGP 129 (132)
T ss_dssp HHHHHHHHTTSC
T ss_pred HHHHHHHHhhcc
Confidence 999999998665
No 93
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A
Probab=96.80 E-value=0.0067 Score=66.87 Aligned_cols=104 Identities=17% Similarity=0.216 Sum_probs=68.8
Q ss_pred CCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCC--------------ceeeeeeCceEeCCCcce
Q 002837 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRG--------------GEVNLTLGGIDLNNSGSV 81 (875)
Q Consensus 16 s~~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~--------------~e~~i~Lg~I~L~~~~sV 81 (875)
....+++|.|.+... .+.|+.|||.|-.+.|.|.+.......-.. ....+++..+.+..
T Consensus 256 ~r~li~eG~l~~~~~---~~~~~~~~~fLF~d~Ll~~k~k~~k~~~k~~~~~~~~~~~~k~~~~~~i~l~~~~v~e---- 328 (377)
T 3p6a_A 256 KKKLVHEGPLTWRVT---KDKAVEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTRE---- 328 (377)
T ss_dssp TSCEEEEEEEEEESS---SSCEEEEEEEEESSEEEEEEEETTEEECCCCCCC---------CSCSEEEGGGEEEEE----
T ss_pred cceEEEECCcEEEec---CCCeEEEEEEeeCCEEEEEEEcCceeEEeecccccccCccccCCCCCeEechhhhccc----
Confidence 356899998843321 236899999999999999985533210000 00123444443332
Q ss_pred eeccCCceeEEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHhhC
Q 002837 82 VVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (875)
Q Consensus 82 ~~~~~Kk~~fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~~a 127 (875)
...+.+.+|++.........|.|+|.|.++.+.|+..|+.++...
T Consensus 329 -~~~~~~~~~~i~~~~~~~~~~~l~A~s~~ek~~W~~~I~~ai~~~ 373 (377)
T 3p6a_A 329 -VATDHKAFYVLFTWDQEAQIYELVAQTVSERKNWCALITETAGSL 373 (377)
T ss_dssp -CTTCTTEEEEEETTCTTCCEEEEECSSHHHHHHHHHHHHHHHHTC
T ss_pred -cccccceeEEEecCCCCCeeEEEecCCHHHHHHHHHHHHHHHHhc
Confidence 123455677776544456789999999999999999999999743
No 94
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A
Probab=96.75 E-value=0.0051 Score=71.71 Aligned_cols=107 Identities=16% Similarity=0.190 Sum_probs=68.1
Q ss_pred CCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCC--------------ceeeeeeCceEeCCCcce
Q 002837 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRG--------------GEVNLTLGGIDLNNSGSV 81 (875)
Q Consensus 16 s~~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~--------------~e~~i~Lg~I~L~~~~sV 81 (875)
....+++|.|.+.. . .+.|+.|||.|-.+.|.|.+...+...-.. -...+++..+.+...
T Consensus 409 ~R~LI~eG~l~~~~--~-~~k~~~r~~fLF~D~LL~~k~k~~ky~~k~~~~~~~~~~d~k~~~~~~i~L~~l~v~e~--- 482 (536)
T 3odw_A 409 KKKLVHEGPLTWRV--T-KDKAVEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTREV--- 482 (536)
T ss_dssp TSCEEEEEEEEEES--C-C---CEEEEEEESSEEEEEEEETTEEECCCC------------CCCSEEEGGGEEEEEC---
T ss_pred cceeeeecceEEEe--c-CCCeeEEEEEEcCCEEEEEEEcCCeEEEeecccccccccccccccCceeecccceeecc---
Confidence 46699999775332 1 235899999999999999886543210000 011234444433331
Q ss_pred eeccCCceeEEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHhhCCcc
Q 002837 82 VVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSA 130 (875)
Q Consensus 82 ~~~~~Kk~~fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~~aP~~ 130 (875)
..+.+.+|++.........|.|+|.|.+|.+.|+..|+.++..+..+
T Consensus 483 --~~d~~~ffli~~~~~~~~~~~L~A~S~eEK~~W~~~I~~aI~~~~~~ 529 (536)
T 3odw_A 483 --ATDHKAFYVLFTWDQEAQIYELVAQTVSERKNWCALITETAGSLKVP 529 (536)
T ss_dssp --TTCTTEEEEEEC---CCCEEEEECSSHHHHHHHHHHHHHHHHTSCCC
T ss_pred --cccCCceEEEecCCCCceEEEEECCCHHHHHHHHHHHHHHHHhCCCc
Confidence 23555677776544456899999999999999999999999876544
No 95
>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase, GTP-binding protein,, signaling protein; HET: GNP; 2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*
Probab=96.58 E-value=0.018 Score=53.57 Aligned_cols=104 Identities=14% Similarity=0.023 Sum_probs=61.8
Q ss_pred CCCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEEEE
Q 002837 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLF 94 (875)
Q Consensus 15 ~s~~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiIt 94 (875)
++..++++|.|..--. ...+.=+++||.|-...|.|-+-......+..-...+++..+.+... .....-+.+|.|.
T Consensus 4 pgR~lv~eG~l~el~~-~~~k~~~~v~~FLfND~Ll~a~~~~~~~~~~~~~~~~~L~~~~v~d~---~d~~~~~n~f~i~ 79 (113)
T 1zc3_B 4 PGQYLVYNGDLVEYEA-DHMAQLQRVHGFLMNDCLLVATWLPQRRGMYRYNALYPLDRLAVVNV---KDNPPMKDMFKLL 79 (113)
T ss_dssp -CCCEEEEEEEEEEET-TTCCEEEEEEEEEESSEEEEEEEECCTTSCEEEEEEEETTTCEEEEE---CCBTTBSSEEEEE
T ss_pred CCeEEEEeCcEEEEcc-ccCCCCccEEEEecCCEEEEEEEeccCcccEEEEEEEEcccCEEEEC---CCCcccceEEEEE
Confidence 4566899996642211 11222356899999998888876433211000011234444333321 1122345667665
Q ss_pred cCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002837 95 PDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (875)
Q Consensus 95 ~~~~~gRty~LqAdTeeE~~eWv~AI~~al~ 125 (875)
.. .+.|+|+|+|.+|..+|+.+|++++.
T Consensus 80 ~~---~~s~~~~aes~~eK~~Wl~~~~~a~~ 107 (113)
T 1zc3_B 80 MF---PESRIFQAENAKIKREWLEVLEETKR 107 (113)
T ss_dssp ET---TEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred eC---CceEEEEcCCHHHHHHHHHHHHHHHH
Confidence 43 37899999999999999999999975
No 96
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens}
Probab=96.44 E-value=0.012 Score=65.77 Aligned_cols=104 Identities=20% Similarity=0.221 Sum_probs=66.8
Q ss_pred CCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCC--------C------CceeeeeeCceEeCCCcce
Q 002837 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQ--------R------GGEVNLTLGGIDLNNSGSV 81 (875)
Q Consensus 16 s~~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~--------~------~~e~~i~Lg~I~L~~~~sV 81 (875)
....+++|.|.+.. . .+.|+.|||.|-.+.|.|.+...+...- + .-...+.+..+.+...
T Consensus 292 ~r~li~eG~l~~~~--~-~~~~~~~~~fLF~d~Ll~~k~~~~k~~~~~~~~~~~~~~~~~~~~k~~i~l~~~~v~~~--- 365 (418)
T 3t06_A 292 TRKMIHEGPLTWRI--S-KDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIRSV--- 365 (418)
T ss_dssp GSCEEEEEEEEECC--B-TTBCCEEEEEEESSEEEEEEECSSCEECCC-------------CCCSEEEGGGEEEEEC---
T ss_pred cceeEEeceEEEEe--C-CCCeEEEEEEecCCEEEEEEEcCCceEEeecccccccCCCcccccCCceechhceeccc---
Confidence 36689999775332 1 2358999999999999998865432100 0 0012344444444321
Q ss_pred eeccCCceeEEEEcCCCC-CceEEEEeCCHHHHHHHHHHHHHHHhhC
Q 002837 82 VVREDKKLLTVLFPDGRD-GRAFTLKAETSEDLYEWKTALELALAQA 127 (875)
Q Consensus 82 ~~~~~Kk~~fiIt~~~~~-gRty~LqAdTeeE~~eWv~AI~~al~~a 127 (875)
..+.+.|+++...... .+.|.|+|.|.++.+.|+.+|+.++..+
T Consensus 366 --~~~~~~f~l~~~~~~~~~~~~~l~A~s~~ek~~W~~~I~~a~~~~ 410 (418)
T 3t06_A 366 --ATDKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVRNA 410 (418)
T ss_dssp --SSCSSEEEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHHTC
T ss_pred --cccCceEEEEecCCCCCceEEEEEcCCHHHHHHHHHHHHHHHhcC
Confidence 1344455666532222 2799999999999999999999999754
No 97
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=96.31 E-value=0.014 Score=65.62 Aligned_cols=100 Identities=17% Similarity=0.239 Sum_probs=62.5
Q ss_pred CCCCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEEE
Q 002837 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVL 93 (875)
Q Consensus 14 ~~s~~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiI 93 (875)
.++...+++|.|..... +.++.|||.|-.+.|.|.+...... ..-...+++.++.+... .....++.|.|
T Consensus 239 ~~~r~li~~g~l~~~~~----~~~~~r~~fLF~d~Ll~~k~~~~~~--y~~k~~i~L~~l~v~~~----~~~~~~~~f~i 308 (434)
T 3mpx_A 239 QPGREFLKEGTLMKVTG----KNRRPRHLFLMNDVLLYTYPQKDGK--YRLKNTLAVANMKVSRP----VMEKVPYALKI 308 (434)
T ss_dssp CTTCCEEECCEEEEEET----TEEEEEEEEEESSEEEEEEECTTSC--EEEEEEEEC-----CCC----CCTTSCSEEEE
T ss_pred cCCcceEecceEEEEeC----CCceEEEEEEECCEEEEEEecCCCe--EEEEEEEEcCCcEEEec----CCCCCCeeEEE
Confidence 34456899997764322 3489999999999999998543211 00112234444444321 11345677777
Q ss_pred EcCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002837 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (875)
Q Consensus 94 t~~~~~gRty~LqAdTeeE~~eWv~AI~~al~~ 126 (875)
.. .++.|+|+|.|.++...|+.+|+.++..
T Consensus 309 ~~---~~~~~~l~a~s~~ek~~W~~~i~~ai~e 338 (434)
T 3mpx_A 309 ET---SESCLMLSASSCAERDEWYGCLSRALPE 338 (434)
T ss_dssp EC---SSCEEEEECSSHHHHHHHHHHHHHC---
T ss_pred ec---CCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 53 2478999999999999999999999864
No 98
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A*
Probab=96.29 E-value=0.027 Score=61.89 Aligned_cols=103 Identities=19% Similarity=0.241 Sum_probs=64.1
Q ss_pred CCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCC-----C---CCc------eeeeeeCceEeCCCcce
Q 002837 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALP-----Q---RGG------EVNLTLGGIDLNNSGSV 81 (875)
Q Consensus 16 s~~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p-----~---~~~------e~~i~Lg~I~L~~~~sV 81 (875)
....+++|.|.+. +. .+.++.|||.|-.+.|.|.+...+... + +.. ...+++..+.+...
T Consensus 250 ~R~li~~G~l~~~--~~-~~~~~~~~~fLF~d~Ll~~k~~~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~v~~~--- 323 (368)
T 1xcg_A 250 TRKMIHEGPLTWR--IS-KDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIRSV--- 323 (368)
T ss_dssp GSCEEEEEEEEEC--CS-SSCCCEEEEEEESSEEEEEEECSSCEECCC-------------CCCSEEEGGGEEEEEC---
T ss_pred cceEEeecceEee--ec-CCCeeEEEEEcccccHHHhhcccccceeeeccccccCCCCcccCcCCceEccceeeecc---
Confidence 4568999977532 21 345899999999999999886532100 0 000 11233333333221
Q ss_pred eeccCCceeEEEEcCC-CCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002837 82 VVREDKKLLTVLFPDG-RDGRAFTLKAETSEDLYEWKTALELALAQ 126 (875)
Q Consensus 82 ~~~~~Kk~~fiIt~~~-~~gRty~LqAdTeeE~~eWv~AI~~al~~ 126 (875)
..+++.++++.... .....|.|+|.|.++.+.|+.+|+.++.+
T Consensus 324 --~~~~~~f~i~~~~~~g~~~~~~l~a~s~~ek~~W~~~i~~ai~~ 367 (368)
T 1xcg_A 324 --ATDKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVRN 367 (368)
T ss_dssp --SSCSSEEEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred --cCCCceEEEEEecCCCCceEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 12344455555422 12378999999999999999999999864
No 99
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Probab=95.95 E-value=0.02 Score=63.42 Aligned_cols=104 Identities=17% Similarity=0.231 Sum_probs=65.6
Q ss_pred CCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCC-----------CCCc---eeeeeeCceEeCCCcce
Q 002837 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALP-----------QRGG---EVNLTLGGIDLNNSGSV 81 (875)
Q Consensus 16 s~~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p-----------~~~~---e~~i~Lg~I~L~~~~sV 81 (875)
....+++|.|.+.. . .+.++.|||.|-.+.|.|.+...+... ..+. ...+.+..+.+..
T Consensus 254 ~R~li~eG~l~~~~--~-~~~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~v~~---- 326 (385)
T 1txd_A 254 KRKMIHEGPLVWKV--N-RDKTIDLYTLLLEDILVLLQKQDDRLVLRCHSKILASTADSKHTFSPVIKLSTVLVRQ---- 326 (385)
T ss_dssp GSCEEEEEEEEEES--S-SSCBCCEEEEEESSEEEEEEEETTEEECCC-------------CCCSEEEGGGEEEEE----
T ss_pred cceEEEECcEEEEc--C-CCCeEEEEEEecCCeeEEEEecCCeeEEeeccccccccCCCCcCCCCceecccccccc----
Confidence 35689999775332 1 245889999999999998875432210 0000 1122333332221
Q ss_pred eeccCCceeEEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHhhC
Q 002837 82 VVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (875)
Q Consensus 82 ~~~~~Kk~~fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~~a 127 (875)
...+.+.+|+++......+.|.|+|.|.++.+.|+.+|+.++...
T Consensus 327 -~~~d~~~~f~i~~~~~~~~~~~l~a~s~~ek~~W~~~i~~~i~~~ 371 (385)
T 1txd_A 327 -VATDNKALFVISMSDNGAQIYELVAQTVSEKTVWQDLICRMAASV 371 (385)
T ss_dssp -CCC-CCEEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred -cccCCceEEEEEEcCCCceEEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 112345677776543346799999999999999999999998754
No 100
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Probab=95.71 E-value=0.068 Score=57.44 Aligned_cols=103 Identities=15% Similarity=0.178 Sum_probs=64.1
Q ss_pred CceEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCce----eeeeeCceEeCCCcceeeccCCceeEE
Q 002837 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGE----VNLTLGGIDLNNSGSVVVREDKKLLTV 92 (875)
Q Consensus 17 ~~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e----~~i~Lg~I~L~~~~sV~~~~~Kk~~fi 92 (875)
+..+..|.+.+.......+.++.|||.|-.+.|.|.+...... +... ..+++..+.+... .......|.
T Consensus 201 g~li~~~~~~~~~~~~~~~~~~~r~~fLF~d~Ll~~k~~~~~~--~~~~y~~k~~i~l~~~~v~e~-----~~~~~~~F~ 273 (311)
T 1nty_A 201 GELILQESFQVWDPKTLIRKGRERHLFLFEMSLVFSKEVKDSS--GRSKYLYKSKLFTSELGVTEH-----VEGDPCKFA 273 (311)
T ss_dssp CCEEEEEEEEEECSSSSSCCEEEEEEEEESSEEEEEEEEECTT--CCEEEEEEEEEEGGGEEEECC-----CTTCTTEEE
T ss_pred CCceeeeeEEEEcCcccccccceeEEEeccCeEEEEEeeccCC--CCceeEEeeeeeccceeeEEc-----cCCCCceEE
Confidence 3467777665433222245679999999999999988643221 1111 1233333433321 122345566
Q ss_pred EEcC--CCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002837 93 LFPD--GRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (875)
Q Consensus 93 It~~--~~~gRty~LqAdTeeE~~eWv~AI~~al~~ 126 (875)
|... ...+..|.|+|.|.++...|+.+|+.++..
T Consensus 274 i~~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~~i~e 309 (311)
T 1nty_A 274 LWVGRTPTSDNKIVLKASSIENKQDWIKHIREVIQE 309 (311)
T ss_dssp EEESSSCCTTTCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCCceEEEECCCHHHHHHHHHHHHHHHhh
Confidence 6542 123578999999999999999999999864
No 101
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=95.62 E-value=0.056 Score=65.49 Aligned_cols=99 Identities=28% Similarity=0.428 Sum_probs=65.7
Q ss_pred ceEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeeccCCceeEEEEc-C
Q 002837 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFP-D 96 (875)
Q Consensus 18 ~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiIt~-~ 96 (875)
.|++.|||-+...+..+..=|.+||||+..+|.|||++.... ....+++.+..+.....- --.+++.|.++- .
T Consensus 539 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 612 (772)
T 3zvr_A 539 LVIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKE----KKYMLSVDNLKLRDVEKG--FMSSKHIFALFNTE 612 (772)
T ss_dssp CEEEEEEEEESSSCCC---CCEEEEEEESSEEEEESSTTCCC----EEEEEECTTEEEEEC---------CEEEEEEETT
T ss_pred cceeeeeeeecccccccCCCccceeeccccccccccchhhhc----ccccccccccccchhhhc--cccccccccccCCc
Confidence 399999888766666566678999999999999999976653 234556666655543210 013456665543 2
Q ss_pred CC----CCceEEEEeCCHHHHHHHHHHHHH
Q 002837 97 GR----DGRAFTLKAETSEDLYEWKTALEL 122 (875)
Q Consensus 97 ~~----~gRty~LqAdTeeE~~eWv~AI~~ 122 (875)
.+ +-+.+-|.|+|.++...|+..+-.
T Consensus 613 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 642 (772)
T 3zvr_A 613 QRNVYKDYRQLELACETQEEVDSWKASFLR 642 (772)
T ss_dssp SSCSBTTBSEEEEEESSHHHHHHHHHHHHH
T ss_pred cccccchhhhhhhhccccccchhhHHhhhh
Confidence 22 236789999999999999988743
No 102
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A
Probab=95.44 E-value=0.094 Score=57.23 Aligned_cols=102 Identities=15% Similarity=0.121 Sum_probs=64.3
Q ss_pred CCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCC---CceeeeeeCceEeCCCcceee--ccCCcee
Q 002837 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQR---GGEVNLTLGGIDLNNSGSVVV--REDKKLL 90 (875)
Q Consensus 16 s~~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~---~~e~~i~Lg~I~L~~~~sV~~--~~~Kk~~ 90 (875)
....+++|.|.+. | .++.|||.|-.+.|.|.+......... +... ...+.|.+....-... ...-++.
T Consensus 244 ~r~li~eG~l~~~--g----~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~y-~~k~~i~l~~~~v~~~~d~~~~~~~ 316 (354)
T 1dbh_A 244 CNEFIMEGTLTRV--G----AKHERHIFLFDGLMICCKSNHGQPRLPGASNAEY-RLKEKFFMRKVQINDKDDTNEYKHA 316 (354)
T ss_dssp CCCEEEEEEEEET--T----CSSCEEEEEESSEEEEEEECTTCCCCTTSCCCSE-EEEEEEESCSCEEEECCCSSSCCSE
T ss_pred cceEEEEeeEEEE--e----cCceEEEEEeCCEEEEEecCCCCCCCCCCCCcce-eEEEEEeccceEEEeCCcccccCcc
Confidence 4568999966533 3 578999999999999988754211110 1111 1112344433221111 1223567
Q ss_pred EEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002837 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (875)
Q Consensus 91 fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~~ 126 (875)
|.|... ++..|.|+|.|.++...|+.+|+.+..+
T Consensus 317 F~i~~~--~~~~~~l~a~s~~ek~~W~~~i~~~~~~ 350 (354)
T 1dbh_A 317 FEIILK--DENSVIFSAKSAEEKNNWMAALISLQYR 350 (354)
T ss_dssp EEECCT--TSCCEEEECSSHHHHHHHHHHHHHHHTT
T ss_pred EEEecC--CCCEEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 777643 2579999999999999999999998753
No 103
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}
Probab=95.32 E-value=0.081 Score=58.06 Aligned_cols=105 Identities=11% Similarity=0.172 Sum_probs=63.0
Q ss_pred CceEEEeeeeeecc--CC-CCCCcEEEEEEEeCCeeeEecCCCCCCCCCC--c---eeeeeeCceEeCCCcceeeccCCc
Q 002837 17 NTVFKSGPLFISSK--GI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRG--G---EVNLTLGGIDLNNSGSVVVREDKK 88 (875)
Q Consensus 17 ~~V~KeG~L~l~Kk--G~-~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~--~---e~~i~Lg~I~L~~~~sV~~~~~Kk 88 (875)
...++.|.+++... |. ..+.++.|||.|-.+.|.|-+........+. . ...+++..+.+... ....+
T Consensus 205 ~~Ll~~g~~~v~~~~~~~~~~~~~~~r~~fLF~d~Ll~~k~~~~~~~~~~~~~y~~k~~i~l~~~~v~~~-----~~~~~ 279 (354)
T 2rgn_B 205 GKLLGQDTFWVTEPEAGGLLSSRGRERRVFLFEQIIIFSEALGGGVRGGTQPGYVYKNSIKVSCLGLEGN-----LQGDP 279 (354)
T ss_dssp CCEEEEEEEEEECC-------CCCCEEEEEEESSEEEEEEECC--------CCEEEEEEEEGGGEEEEES-----GGGCT
T ss_pred ccccccceEEEEcCCcCccccCCCceEEEEEeCCcEEEEEeccCCCCCCCCCceEEcceeeccceeeeec-----cCCCC
Confidence 45788897775532 11 2356899999999999999886543210000 0 11223333333211 11233
Q ss_pred eeEEEEcCCC--CCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002837 89 LLTVLFPDGR--DGRAFTLKAETSEDLYEWKTALELALAQ 126 (875)
Q Consensus 89 ~~fiIt~~~~--~gRty~LqAdTeeE~~eWv~AI~~al~~ 126 (875)
+.|.|+..++ ....|.|+|.|.++.+.|+.+|+.++..
T Consensus 280 ~~F~i~~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai~~ 319 (354)
T 2rgn_B 280 CRFALTSRGPEGGIQRYVLQAADPAISQAWIKHVAQILES 319 (354)
T ss_dssp TEEEEEEECSSSCEEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEecCCCCCceEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 4566654332 2479999999999999999999999863
No 104
>1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1
Probab=95.31 E-value=0.09 Score=49.78 Aligned_cols=39 Identities=13% Similarity=0.198 Sum_probs=30.9
Q ss_pred CceeEEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002837 87 KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (875)
Q Consensus 87 Kk~~fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~~ 126 (875)
...||.|...+ ..+++.|.|+|.++++.|+..|+..+..
T Consensus 84 ~~~~FsIiy~~-~~k~LdlvA~s~~e~~~Wv~gL~~L~~~ 122 (131)
T 1mai_A 84 EDRCFSIVFKD-QRNTLDLIAPSPADAQHWVQGLRKIIHH 122 (131)
T ss_dssp GGGEEEEEESS-SCCCEEEECSSHHHHHHHHHHHHHHHC-
T ss_pred ccceEEEEECC-CCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 34578766543 2479999999999999999999998864
No 105
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1
Probab=95.24 E-value=0.14 Score=57.13 Aligned_cols=109 Identities=13% Similarity=0.062 Sum_probs=66.3
Q ss_pred CCCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceee---ccCCceeE
Q 002837 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV---REDKKLLT 91 (875)
Q Consensus 15 ~s~~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~---~~~Kk~~f 91 (875)
+....+++|.|..... ..+.++.|||.|-.+.|.|.+..........-...+++..+.+........ ...-+++|
T Consensus 253 ~~r~Li~~G~l~~~~~--~~~k~~~r~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~~~~~~~~~~~~F 330 (402)
T 2dfk_A 253 RSSELIYTGEMAWIYQ--PYGRNQQRVFFLFDHQMVLCKKDLIRRDILYYKGRIDMDKYEVIDIEDGRDDDFNVSMKNAF 330 (402)
T ss_dssp TCCCEEEEEEEEEESS--TTCCCEEEEEEEETTEEEEEEECSSCTTCEEEEEEEEGGGEEEEECCSEECSSSCCEESSEE
T ss_pred cccceEEeceEEEEec--cCCceEEEEEEeeCCEEEEEEeccccCCceEEeeeeeccceEEEecCCCCccccccccceeE
Confidence 4456899997754322 123589999999999999998643211000011224444444432211000 00113467
Q ss_pred EEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002837 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (875)
Q Consensus 92 iIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~~ 126 (875)
.|.... .+..|.|+|.|.++...|+.+|+.+...
T Consensus 331 ~i~~~~-~~~~~~l~a~s~~eK~~Wi~~i~~a~~~ 364 (402)
T 2dfk_A 331 KLHNKE-TEEVHLFFAKKLEEKIRWLRAFREERKM 364 (402)
T ss_dssp EEEESS-SSCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred EEEECC-CCeEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 665432 3579999999999999999999998764
No 106
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Probab=95.17 E-value=0.13 Score=58.53 Aligned_cols=108 Identities=19% Similarity=0.170 Sum_probs=65.5
Q ss_pred CCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCccee---eccCCceeEE
Q 002837 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV---VREDKKLLTV 92 (875)
Q Consensus 16 s~~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~---~~~~Kk~~fi 92 (875)
....+++|.|..... ..+.++.|||.|-.+.|.|.+..........-...+++..+.+.....-. ....-+++|.
T Consensus 331 ~r~li~~G~l~~~~~--~~~~~~~r~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~~~~~~~~~~~~F~ 408 (466)
T 2pz1_A 331 SSELIYSGELTRVTQ--PQAKSQQRMFFLFDHQLIYCKKDLLRRDVLYYKGRLDMDGLEVVDLEDGKDRDLHVSIKNAFR 408 (466)
T ss_dssp CSCEEEEEEEEEECT--TTCCEEEEEEEEETTEEEEEEECSSCTTCEEEEEEEETTTCEEEECCSBSCCSSCCCBCEEEE
T ss_pred cceeEEeeeEEEEec--CCCCeeEEEEEEECCEEEEEEeccccCCceEEeeeeeccceEEEeCCCCcccccccccceeEE
Confidence 456899997764322 22357899999999999999864321110000122333333332211100 0002245677
Q ss_pred EEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002837 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (875)
Q Consensus 93 It~~~~~gRty~LqAdTeeE~~eWv~AI~~al~~ 126 (875)
|... ..+..|+|+|.|.++...|+.+|+.+..+
T Consensus 409 i~~~-~~~~~~~l~a~s~~eK~~W~~~i~~a~~~ 441 (466)
T 2pz1_A 409 LHRG-ATGDSHLLCTRKPEQKQRWLKAFAREREQ 441 (466)
T ss_dssp EECS-SSCCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred EEeC-CCCeEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 7643 23579999999999999999999999864
No 107
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A
Probab=95.05 E-value=0.17 Score=55.43 Aligned_cols=104 Identities=13% Similarity=0.223 Sum_probs=64.6
Q ss_pred CceEEEeeeeee---ccCCC------CCCcEEEEEEEeCCeeeEecCCCCCCCC--CCce----eeeeeCceEeCCCcce
Q 002837 17 NTVFKSGPLFIS---SKGIG------WKSWKKRWFILTRTSLVFFKNDPSALPQ--RGGE----VNLTLGGIDLNNSGSV 81 (875)
Q Consensus 17 ~~V~KeG~L~l~---KkG~~------~ksWKKRWFVL~~~~L~YYKd~~~~~p~--~~~e----~~i~Lg~I~L~~~~sV 81 (875)
+..+++|.|.+. ++|.. +..++.|||.|-.+.|.|.+........ .... ..+++..+.+...
T Consensus 208 g~ll~~g~l~~~~~~~~g~~~~k~~~~~k~~~r~~fLF~d~Ll~~k~~~~~~~~~~~~~~y~~k~~i~l~~~~v~e~--- 284 (353)
T 1kz7_A 208 GKLLMQGSFSVWTDHKKGHTKVKELARFKPMQRHLFLHEKAVLFCKKREENGEGYEKAPSYSYKQSLNMTAVGITEN--- 284 (353)
T ss_dssp CCEEEEEEEEEEECCCCC-----CCCSSSCEEEEEEEESSEEEEEEEECCCCSSCCCSCEEEEEEEEEGGGEEEECC---
T ss_pred hhhheecceEEEecCccccchhhhhhccCcceeEEEEECCEEEEEEeccccccCCCCCCeEEEEEEeEcccceeeEc---
Confidence 358899987543 23310 2347999999999999999865432100 0011 1233333333321
Q ss_pred eeccCCceeEEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002837 82 VVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (875)
Q Consensus 82 ~~~~~Kk~~fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~~ 126 (875)
..+.+..|.|...+ ....|.|+|.|.++...|+.+|+.++..
T Consensus 285 --~~~~~~~F~i~~~~-~~~~~~l~a~s~~ek~~W~~~i~~ai~~ 326 (353)
T 1kz7_A 285 --VKGDTKKFEIWYNA-REEVYIIQAPTPEIKAAWVNAIRKVLTS 326 (353)
T ss_dssp --BTTBTTEEEEEETT-TTEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred --CCCCCceEEEEECC-CCcEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 12234567666533 3478999999999999999999999864
No 108
>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural genomics, structural genomics consortium, SGC; 2.39A {Homo sapiens}
Probab=94.71 E-value=0.18 Score=48.77 Aligned_cols=103 Identities=14% Similarity=-0.025 Sum_probs=63.1
Q ss_pred eEEEeeeeeec--cCCCCCCcEEEEEEEeCCeeeEecCCCCCC--CCCCceeeeeeCceEeCCCcceeeccCCceeEEEE
Q 002837 19 VFKSGPLFISS--KGIGWKSWKKRWFILTRTSLVFFKNDPSAL--PQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLF 94 (875)
Q Consensus 19 V~KeG~L~l~K--kG~~~ksWKKRWFVL~~~~L~YYKd~~~~~--p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiIt 94 (875)
.++.+-||--- -...++.-+.|+|.|-++.|.|-|.-+... ....-...+++.|..+..... ..-.++|.|.
T Consensus 13 lvc~~~l~ev~d~~K~~~kg~qqR~~FLFND~LL~TK~~~kkk~~~~Y~vr~~~~L~gm~V~~~e~----e~~p~~~~l~ 88 (140)
T 3qwm_A 13 LVCYCRLFEVPDPNKPQKLGLHQREIFLFNDLLVVTKIFQKKKNSVTYSFRQSFSLYGMQVLLFEN----QYYPNGIRLT 88 (140)
T ss_dssp EEEEEEEEECSCTTSCCCTTTTEEEEEEESSCEEEEECCC---CCCCCCCEEEECCTTEEEEEECC----SSCTTEEEEE
T ss_pred EEEEEeeeeeccCcccccccccceEEEEecchhhheeecccCCCCCceEEEEEeeecceEEEcccC----CCCceEEEEE
Confidence 57777665221 011234458999999999999997333221 111112345566655543222 2345566665
Q ss_pred cCCC---CCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002837 95 PDGR---DGRAFTLKAETSEDLYEWKTALELALA 125 (875)
Q Consensus 95 ~~~~---~gRty~LqAdTeeE~~eWv~AI~~al~ 125 (875)
.... ..+.+.|.|.|..|+..|+.+|+.++.
T Consensus 89 s~~~G~~~k~~i~~~A~s~~ER~rwi~dL~esI~ 122 (140)
T 3qwm_A 89 SSVPGADIKVLINFNAPNPQDRKKFTDDLRESIA 122 (140)
T ss_dssp ECCTTSCCEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred ecCCCCcceEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 4221 237899999999999999999999985
No 109
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=94.08 E-value=0.28 Score=54.62 Aligned_cols=104 Identities=18% Similarity=0.236 Sum_probs=64.3
Q ss_pred ceEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCccee-eccCCceeEEEEcC
Q 002837 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV-VREDKKLLTVLFPD 96 (875)
Q Consensus 18 ~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~-~~~~Kk~~fiIt~~ 96 (875)
..+++|.|.+... ..+.++.||+.|-...|.|-+...... .-...+++..+.+....... ....-++.|.|...
T Consensus 233 rli~~G~l~~~~~--~~~~~~~~~~fLF~d~Ll~~k~k~~~y---~~k~~i~l~~~~v~~~~~~~~~~~~~~~~F~i~~~ 307 (406)
T 2vrw_B 233 RPKIDGELKITSV--ERRSKTDRYAFLLDKALLICKRRGDSY---DLKASVNLHSFQVRDDSSGERDNKKWSHMFLLIED 307 (406)
T ss_dssp SEEEEEEEEEECS--SCCSCEEEEEEEESSEEEEEEEETTEE---EEEEEEETTTEEEEC--------CTTCEEEEEEET
T ss_pred cccccccEEEEec--CCCccceEEEEecCCEEEEEEecCCce---EEEEEecccceeeeecCCCCccCCccceeeEEEec
Confidence 4789997764432 234689999999999999988642211 01122344444443321100 00112356666542
Q ss_pred CCCCceEEEEeCCHHHHHHHHHHHHHHHhhC
Q 002837 97 GRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (875)
Q Consensus 97 ~~~gRty~LqAdTeeE~~eWv~AI~~al~~a 127 (875)
...+.|.|+|.|.++.+.|+.+|+.++...
T Consensus 308 -~~~~~~~l~a~s~~ek~~W~~~i~~ai~~~ 337 (406)
T 2vrw_B 308 -QGAQGYELFFKTRELKKKWMEQFEMAISNI 337 (406)
T ss_dssp -TCSCEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred -CCCceEEEeCCCHHHHHHHHHHHHHHHhhh
Confidence 235789999999999999999999998753
No 110
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.85 E-value=0.22 Score=62.61 Aligned_cols=103 Identities=16% Similarity=0.225 Sum_probs=45.1
Q ss_pred HhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHH
Q 002837 584 IQRLEITKNDLRHRIAKEARGNAILQASLERRKQ------------------------ALHERRLALEQDVSRLQEQLQA 639 (875)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~------------------------~~~~~r~~LeqeV~~Lq~qL~~ 639 (875)
...||..-.+||.|+..+.+.|+.||..+..-+. .+...-..|+++++.|++++++
T Consensus 923 ~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~ 1002 (1080)
T 2dfs_A 923 HIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQ 1002 (1080)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888999998888888877765321111 1122344567777777777777
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 640 ERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (875)
Q Consensus 640 E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~ 699 (875)
...-...||..+..- ..+|=+.|+-||.+...|+|++.+|...+-.+
T Consensus 1003 ~~ke~~~lee~~~~~-------------~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~ 1049 (1080)
T 2dfs_A 1003 TQTEKKTIEEWADKY-------------KHETEQLVSELKEQNTLLKTEKEELNRRIHDQ 1049 (1080)
T ss_dssp HHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666677665411 02444667888888899999998888544433
No 111
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=93.56 E-value=0.49 Score=44.35 Aligned_cols=37 Identities=14% Similarity=0.221 Sum_probs=28.2
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Q 002837 587 LEITKNDLRHRIAKEARGNAILQASLERRKQALHERR 623 (875)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r 623 (875)
.|..-.+||.+|..-.++||.|+.-+.+-+.+..+.|
T Consensus 18 ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk 54 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLR 54 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556679999999889999999988876665554443
No 112
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Probab=93.53 E-value=0.27 Score=53.40 Aligned_cols=102 Identities=16% Similarity=0.110 Sum_probs=60.6
Q ss_pred CCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCC--ceeeeeeCceEeCCCcc--eee--------
Q 002837 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRG--GEVNLTLGGIDLNNSGS--VVV-------- 83 (875)
Q Consensus 16 s~~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~--~e~~i~Lg~I~L~~~~s--V~~-------- 83 (875)
....+++|.|.. ++ .+.|||.|-.+.|.|.+.......... -...+++..+.+..... +..
T Consensus 229 ~r~li~~G~l~~--~~-----~~~~~~fLF~d~Ll~~k~~~~~~~~~~~v~k~~i~l~~l~v~~~~d~~~~~~~s~~g~~ 301 (346)
T 2z0q_A 229 SRVLCCHGELKN--NR-----GVKLHVFLFQEVLVITRAVTHNEQLCYQLYRQPIPVKDLTLEDLQDGEVRLGGSLRGAF 301 (346)
T ss_dssp CCCEEEEEEEEE--TT-----SCEEEEEEESSEEEEEEEEEETTEEEEEESSCCEEGGGCEEEECCTTTSCCCSCC--CC
T ss_pred CeEEEEeceeEE--CC-----CcEEEEEECCCcEEEEEEeccCCceeeeeecCCcchhhceeeecCCCccccCccccccc
Confidence 345789996642 21 278999999999999885322100000 00123343333332111 000
Q ss_pred --ccCCceeEEEEcC-CCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 002837 84 --REDKKLLTVLFPD-GRDGRAFTLKAETSEDLYEWKTALELAL 124 (875)
Q Consensus 84 --~~~Kk~~fiIt~~-~~~gRty~LqAdTeeE~~eWv~AI~~al 124 (875)
....+++|.|... +..+..|+|+|.|.++.+.|+.+|+.|+
T Consensus 302 ~~~~~~~~~F~i~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai 345 (346)
T 2z0q_A 302 SNNERVKNFFRVSFKNGSQSQTHSLQANDTFNKQQWLNCIRQAK 345 (346)
T ss_dssp SHHHHTSSEEEEEECCGGGCEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred cCCcccccceEEEEecCCCCceEEEEECCHHHHHHHHHHHHHhh
Confidence 0123457777543 2346899999999999999999999986
No 113
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=93.52 E-value=2 Score=42.56 Aligned_cols=86 Identities=19% Similarity=0.265 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC---CC-------CCC-CCCChhHHHHHHHHHHHHHHHHHHH
Q 002837 618 ALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSG---QF-------SSS-RGMDSKTRAELEEIALAEADVARLK 686 (875)
Q Consensus 618 ~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~---~~-------~~~-~~lp~~~~~ll~eia~~E~~v~~Le 686 (875)
.+..-|.+||+||..||-+|..|+.-|.--..-+.---| .| ... ..+-...+.|-+-|..||-+-+++|
T Consensus 59 ~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 59 ILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 455568899999999999999999655433321100000 00 000 1112233556666666777777777
Q ss_pred ----HHHHHHHHHHHHHHhhh
Q 002837 687 ----QKVAELHHQLNQQRQHH 703 (875)
Q Consensus 687 ----~~v~~l~~~l~~~~~~~ 703 (875)
=++..|+..+.||..++
T Consensus 139 id~~~eLKalQ~~~eqE~~~H 159 (168)
T 3o0z_A 139 IDLNYKLKSLQQRLEQEVNEH 159 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777766543
No 114
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=93.42 E-value=0.014 Score=66.75 Aligned_cols=99 Identities=16% Similarity=0.162 Sum_probs=0.0
Q ss_pred CceEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCc---------------eeeeeeCceEeCCCcce
Q 002837 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGG---------------EVNLTLGGIDLNNSGSV 81 (875)
Q Consensus 17 ~~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~---------------e~~i~Lg~I~L~~~~sV 81 (875)
...+++|.|.+. +.++.|||.|-...|.|.+..+......+. ...+++.++.+....
T Consensus 251 r~li~eG~l~~~------~~~~~~~~fLF~d~Ll~~k~~~~~~~~~g~~~~f~~~~~~~~~v~k~~i~l~~~~v~~~~-- 322 (510)
T 3jzy_A 251 RKLLHSGKLYKT------KSNKELHGFLFNDFLLLTYMVKQFAVSSGSEKLFSSKSNAQFKMYKTPIFLNEVLVKLPT-- 322 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceeEEeceEEEc------CCCcEEEEEcccceeEEeeecccccccCCcccccCcccccceeEEcCceehhheEEeccC--
Confidence 457788866532 347899999999999999855433111110 111233333333211
Q ss_pred eeccCCceeEEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHhhC
Q 002837 82 VVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (875)
Q Consensus 82 ~~~~~Kk~~fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~~a 127 (875)
.....+++|.|... .+.|+|+|.|.++...|+.+|+.++...
T Consensus 323 -d~~~~~~~F~i~~~---~~~~~l~a~s~~ek~~W~~~i~~ai~~~ 364 (510)
T 3jzy_A 323 -DPSSDEPVFHISHI---DRVYTLRTDNINERTAWVQKIKAASEQY 364 (510)
T ss_dssp ----------------------------------------------
T ss_pred -CCCccccceeeecc---ceeEEeccCCHHHHHHHHHHHHHHHHHH
Confidence 11234567877653 3799999999999999999999998643
No 115
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=93.05 E-value=0.31 Score=57.22 Aligned_cols=104 Identities=18% Similarity=0.213 Sum_probs=63.6
Q ss_pred ceEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCccee-eccCCceeEEEEcC
Q 002837 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV-VREDKKLLTVLFPD 96 (875)
Q Consensus 18 ~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~-~~~~Kk~~fiIt~~ 96 (875)
..+++|.|.+.. ...+.++.||+.|-.+.|.|-+...... .-...+++..+.+.....-. ....-++.|.|...
T Consensus 405 rll~~G~l~~~~--~~~~~~~~r~~fLF~d~Ll~~k~~~~~y---~~k~~i~L~~~~v~~~~~~~~~~~~~~~~f~i~~~ 479 (587)
T 3ky9_A 405 RPKIDGELKITS--VERRSKMDRYAFLLDKALLICKRRGDSY---DLKDFVNLHSFQVRDDSSGDRDNKKWSHMFLLIED 479 (587)
T ss_dssp CEEEEEEEEEEC--SSCCSCEEEEEEEETTEEEEEEEETTEE---EEEEEEEGGGEEEEEC-----CCCTTCEEEEEEET
T ss_pred ceEEEeeEEEEe--ccCCCcceEEEEEECCEEEEEEecCCEE---EeeeeechhhceeeecCCCCcccccccceeEEEEc
Confidence 378999776443 2346689999999999999998652211 11223444444443321100 00112345666543
Q ss_pred CCCCceEEEEeCCHHHHHHHHHHHHHHHhhC
Q 002837 97 GRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (875)
Q Consensus 97 ~~~gRty~LqAdTeeE~~eWv~AI~~al~~a 127 (875)
. ..+.|.|+|.|.++.+.|+.+|+.++...
T Consensus 480 ~-~~~~~~L~A~S~eeK~~Wi~~I~~ai~~~ 509 (587)
T 3ky9_A 480 Q-GAQGYELFFKTRELKKKWMEQFEMAISNI 509 (587)
T ss_dssp T-C---CEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred C-CCceEEEEeCCHHHHHHHHHHHHHHhhhh
Confidence 2 24789999999999999999999999653
No 116
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=92.34 E-value=1.8 Score=40.96 Aligned_cols=33 Identities=27% Similarity=0.514 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 613 ERRKQALHERRLALEQDVSRLQEQLQAERDLRA 645 (875)
Q Consensus 613 ~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~ 645 (875)
+.|...+..++..||..|..|+.+|..|.+...
T Consensus 68 EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~ 100 (129)
T 2fxo_A 68 EERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNA 100 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555555554443
No 117
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1
Probab=91.55 E-value=1.6 Score=47.82 Aligned_cols=107 Identities=12% Similarity=0.153 Sum_probs=59.6
Q ss_pred CceEEEeeeeeec-cC--CCCCCcEEEEEEEeCCeeeEe-cCCCCCCCC-C----------Cc----eeeeeeCceEeCC
Q 002837 17 NTVFKSGPLFISS-KG--IGWKSWKKRWFILTRTSLVFF-KNDPSALPQ-R----------GG----EVNLTLGGIDLNN 77 (875)
Q Consensus 17 ~~V~KeG~L~l~K-kG--~~~ksWKKRWFVL~~~~L~YY-Kd~~~~~p~-~----------~~----e~~i~Lg~I~L~~ 77 (875)
+..+..|.+.+.. .+ +..+..+.|++.|-.+.|.|. +.......+ + +. ...+++..+.+..
T Consensus 236 g~ll~~~~~~~~~~~~~~~~~~k~~~~~~fLF~d~lll~~k~~~~~k~~~~~~~~~s~~~~~~~y~~k~~i~l~~~~v~~ 315 (377)
T 1foe_A 236 GDLLLHTSVIWLNPPASLGKWKKEPELAAFVFKTAVVLVYKDGSKQKKKLVGSHRLSIYEEWDPFRFRHMIPTEALQVRA 315 (377)
T ss_dssp GGEEEEEEEEESSCCHHHHTTCSSCEEEEEEETTEEEEEECCCCCSCCSSCCCTTTTCSSCSCSCCCEEEEEGGGEEEEC
T ss_pred cceeeecceeeccCchhhccccccceEEEEEcCCeEEEEeccccccccccccccccccccCCCceeEeeeccccceEEEe
Confidence 3466777553221 10 112345789999999877764 432111100 0 00 1234555555543
Q ss_pred CcceeeccCCceeEEEEcC-----CCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002837 78 SGSVVVREDKKLLTVLFPD-----GRDGRAFTLKAETSEDLYEWKTALELALA 125 (875)
Q Consensus 78 ~~sV~~~~~Kk~~fiIt~~-----~~~gRty~LqAdTeeE~~eWv~AI~~al~ 125 (875)
... .....+.+|.|... +...+.|.|+|.|.++.+.|+.+|+.++.
T Consensus 316 ~~~--~~~~~~~~f~i~~~~~~~~~~~~~~~~l~A~s~~eK~~W~~~i~~~i~ 366 (377)
T 1foe_A 316 LPS--ADAEANAVCEIVHVKSESEGRPERVFHLCCSSPESRKDFLKSVHSILR 366 (377)
T ss_dssp CCC--TTTTSCCEEEEEECCBTGGGBCCEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred cCC--CccchhhHHHHHhccccccCCCcceEEEEeCCHHHHHHHHHHHHHHhh
Confidence 221 01122345555421 23357899999999999999999999985
No 118
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=91.29 E-value=0.51 Score=59.23 Aligned_cols=100 Identities=16% Similarity=0.213 Sum_probs=64.0
Q ss_pred CCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCCCCCC-------ceeeeeeCceEeCCCcceeeccCCc
Q 002837 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRG-------GEVNLTLGGIDLNNSGSVVVREDKK 88 (875)
Q Consensus 16 s~~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~-------~e~~i~Lg~I~L~~~~sV~~~~~Kk 88 (875)
....+++|.|.+ .+.+ +.|||.|-.+.|.|.|.........+ -...+++..+.+.... ....-+
T Consensus 441 ~r~Li~eG~l~~--~~~k----~~r~~FLF~D~Ll~~K~~~~~~~~~g~~~~~y~~k~~i~L~~l~V~~~~---d~~~~~ 511 (1049)
T 3ksy_A 441 CNEFIMEGTLTR--VGAK----HERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQINDKD---DTNEYK 511 (1049)
T ss_dssp CSCCCCEEEEEE--TTCS----SCEEEEEETTEEEEEECCTTCCCCTTSCCCSCCCCCEECCSSCCCCCCC---CSSSCC
T ss_pred cceEEEeceEEE--EccC----ceEEEEeeCCeEEEEEecCccCCCCCCCCCceEEEEEEEcCceEEEECC---CCcccc
Confidence 455789997653 3321 78999999999999997643221111 1122333333333211 122345
Q ss_pred eeEEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Q 002837 89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (875)
Q Consensus 89 ~~fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~~ 126 (875)
+.|.|... ++..|+|+|.|.++...|+.+|+.+..+
T Consensus 512 ~~F~I~~~--~~~~~~L~A~S~eeK~~Wi~~I~~~q~k 547 (1049)
T 3ksy_A 512 HAFEIILK--DENSVIFSAKSAEEKNNWMAALISLQYR 547 (1049)
T ss_dssp SEEEECCT--TSCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEcC--CCCEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 67777543 3579999999999999999999988654
No 119
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=90.41 E-value=0.74 Score=55.19 Aligned_cols=97 Identities=20% Similarity=0.328 Sum_probs=59.9
Q ss_pred CCCCceEEEeeeeeeccC-CCCCCcEEEEEEEeCCeeeEecCCCCCCCCCCceeeeeeCceEeCCCcceeec-cCCceeE
Q 002837 14 GASNTVFKSGPLFISSKG-IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR-EDKKLLT 91 (875)
Q Consensus 14 ~~s~~V~KeG~L~l~KkG-~~~ksWKKRWFVL~~~~L~YYKd~~~~~p~~~~e~~i~Lg~I~L~~~~sV~~~-~~Kk~~f 91 (875)
.....+++.|++. |.| .....|++|++.|..+.+.+....... .. . +.+..+..|... .....++
T Consensus 554 ~~~~~~i~~G~~~--k~~g~f~~~~~rR~~~l~p~r~e~~~e~~~~-----~~-l-----~~~~~v~~v~k~~i~~~~~l 620 (689)
T 3v5w_A 554 ALGKDCIMHGYMS--KMGNPFLTQWQRRYFYLFPNRLEWRGEGEAP-----QS-L-----LTMEEIQSVEETQIKERKCL 620 (689)
T ss_dssp TSSSCCCEEEEEE--EC-------CEEEEEEEETTEEEEECTTSCC-----CE-E-----EEGGGEEEEEEEESSSCEEE
T ss_pred ccCCcceeecccc--cCCCcccchhhhhccccCCCcccccccCCCC-----cc-e-----eeeccccccccCcCCCCcce
Confidence 3456788999554 544 345689999999999998887643221 11 1 222221111111 1233455
Q ss_pred EEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002837 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (875)
Q Consensus 92 iIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~ 125 (875)
.+.. .++++|++++.+..++.+|..+|+.+..
T Consensus 621 ~~~~--k~~k~f~~~t~~~~~~~~W~~~i~~~~~ 652 (689)
T 3v5w_A 621 LLKI--RGGKQFILQCDSDPELVQWKKELRDAYR 652 (689)
T ss_dssp EEEE--TTTEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred eeee--cCCcEEEEECCChHHHHHHHHHHHHHHH
Confidence 5544 4689999999999999999999998875
No 120
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=90.19 E-value=0.96 Score=41.07 Aligned_cols=75 Identities=21% Similarity=0.293 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 620 HERRLALEQDVSRLQEQLQAERDLRAALEVGLSM--SSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (875)
Q Consensus 620 ~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~--~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~ 694 (875)
..||..|++.|.+|++.+++|..=|.+|++-..- ....+..|..+-.+.-+.-..|..|.+++-+++..+.++..
T Consensus 14 eqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~e~ 90 (98)
T 2ke4_A 14 EQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEAES 90 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5678889999999999999999999999976532 12234455566666666666788888888888888888743
No 121
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=89.68 E-value=2.9 Score=36.98 Aligned_cols=79 Identities=28% Similarity=0.429 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHH
Q 002837 592 NDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAE 671 (875)
Q Consensus 592 ~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~l 671 (875)
.+||.+|..-.-.||.|+.-+. -+...|..++.+.+.|..+|..+|.-+. ..+..
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~d-----------n~~~~~edfk~KyE~E~~~R~~~E~d~~--------------~Lrkd 57 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERD-----------NLAEDIMRLREKLQEEMLQREEAENTLQ--------------SFRQD 57 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHhh
Confidence 4688888766667776665544 3667888899999999999999998775 23455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 672 LEEIALAEADVARLKQKVAELHHQLNQ 698 (875)
Q Consensus 672 l~eia~~E~~v~~Le~~v~~l~~~l~~ 698 (875)
+.+..+.=.+ ||.+|..|...|.=
T Consensus 58 vD~a~l~r~d---LE~kvesL~eEl~f 81 (86)
T 3swk_A 58 VDNASLARLD---LERKVESLQEEIAF 81 (86)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 6665554444 77777777776653
No 122
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=88.77 E-value=3 Score=48.36 Aligned_cols=34 Identities=18% Similarity=0.188 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002837 669 RAELEEIALAEADVARLKQKVAELHHQLNQQRQH 702 (875)
Q Consensus 669 ~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~~ 702 (875)
++.-++...+|.++.+||+++...+.++.+.+++
T Consensus 533 ~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e 566 (597)
T 3oja_B 533 DAKQKETEDLEQENIALEKQLDNKRAKQAELRQE 566 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHH
Confidence 4666777777888888888888777777766654
No 123
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=82.67 E-value=6.7 Score=44.19 Aligned_cols=77 Identities=13% Similarity=0.209 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 618 ALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLN 697 (875)
Q Consensus 618 ~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~ 697 (875)
+.+.++..|+|++.++|+-|.+=+.--..-..- .+.+...|..+.-.-+.-|.-||.+|..|++++.+++.++-
T Consensus 394 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 394 EARNVTHLLQQELTEAQKGFQDVEAQAATANHT------VMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778889999999999887643221110000 00011122333333457888899999999999999999987
Q ss_pred HHH
Q 002837 698 QQR 700 (875)
Q Consensus 698 ~~~ 700 (875)
++|
T Consensus 468 ~~~ 470 (471)
T 3mq9_A 468 RLR 470 (471)
T ss_dssp HHH
T ss_pred Hhc
Confidence 775
No 124
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=79.45 E-value=35 Score=32.00 Aligned_cols=36 Identities=42% Similarity=0.482 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 613 ERRKQALHERRLALEQDVSRLQEQLQAERDLRAALE 648 (875)
Q Consensus 613 ~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le 648 (875)
+.+++.+.+....|.++...|+.||+.|++.-.-.+
T Consensus 33 e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~E 68 (129)
T 2fxo_A 33 EARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAE 68 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 677888899999999999999999999998854433
No 125
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=77.79 E-value=17 Score=32.86 Aligned_cols=31 Identities=29% Similarity=0.445 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 619 LHERRLALEQDVSRLQEQLQAERDLRAALEV 649 (875)
Q Consensus 619 ~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~ 649 (875)
++......+-++.+|+.+|.+|+..|...|.
T Consensus 17 le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~ 47 (97)
T 2eqb_B 17 LKRELSDRDDEVKRLREDIAKENELRTKAEE 47 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445777888888888888888875544
No 126
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=77.74 E-value=4.4 Score=40.90 Aligned_cols=18 Identities=17% Similarity=0.331 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 002837 666 SKTRAELEEIALAEADVA 683 (875)
Q Consensus 666 ~~~~~ll~eia~~E~~v~ 683 (875)
.+--..|+.+|+||.|+-
T Consensus 137 ~kln~aiEr~alLE~El~ 154 (189)
T 2v71_A 137 QRLNQAIERNAFLESELD 154 (189)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344577888888888865
No 127
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=76.74 E-value=45 Score=34.68 Aligned_cols=71 Identities=20% Similarity=0.222 Sum_probs=34.0
Q ss_pred HHHHhHhhhhhHHHHHHHH------HHhhhhhhhhhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 581 ELAIQRLEITKNDLRHRIA------KEARGNAILQAS------LERRKQALHERRLALEQDVSRLQEQLQAERDLRAALE 648 (875)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~------~~~~~n~~~q~~------~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le 648 (875)
+..|.++|..-.+++.||. ..|+.|--+++- +++|...+.+.-.++...++.++..+.+-......++
T Consensus 59 ~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~ 138 (256)
T 3na7_A 59 KLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELE 138 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555666653 234544444443 2344444444444444445555555544444444444
Q ss_pred Hhh
Q 002837 649 VGL 651 (875)
Q Consensus 649 ~al 651 (875)
..|
T Consensus 139 ~~l 141 (256)
T 3na7_A 139 KLA 141 (256)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 128
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=76.37 E-value=47 Score=34.57 Aligned_cols=35 Identities=11% Similarity=0.265 Sum_probs=25.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 665 DSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (875)
Q Consensus 665 p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~ 699 (875)
+....+|..||..++..+..||.++.++..++-..
T Consensus 89 ~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~ 123 (256)
T 3na7_A 89 ERELRSLNIEEDIAKERSNQANREIENLQNEIKRK 123 (256)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667778888888888888887777777766443
No 129
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=76.12 E-value=1.5 Score=34.09 Aligned_cols=20 Identities=30% Similarity=0.473 Sum_probs=10.6
Q ss_pred HHHHHHHHHhhhhhhhhhhH
Q 002837 593 DLRHRIAKEARGNAILQASL 612 (875)
Q Consensus 593 ~~~~~~~~~~~~n~~~q~~~ 612 (875)
.|.+|++-..|+||.|...+
T Consensus 7 qlknrvayklkenakleniv 26 (56)
T 3he4_A 7 QLKNRVAYKLKENAKLENIV 26 (56)
T ss_dssp ----CCCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchHHHHH
Confidence 45666666677777765543
No 130
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=71.98 E-value=22 Score=40.97 Aligned_cols=29 Identities=14% Similarity=0.141 Sum_probs=10.7
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhhhhHHHH
Q 002837 587 LEITKNDLRHRIAKEARGNAILQASLERR 615 (875)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~n~~~q~~~~~r 615 (875)
++.....|+.++...-+.-+..+..++.+
T Consensus 461 ~~~~i~~l~~~~~~~~~~l~~~~~~i~~~ 489 (597)
T 3oja_B 461 LRAEVQQLTNEQIQQEQLLQGLHAEIDTN 489 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33333333333333333333333333333
No 131
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Probab=67.66 E-value=8 Score=40.90 Aligned_cols=56 Identities=14% Similarity=0.233 Sum_probs=38.4
Q ss_pred eeeeeCceEeCCCcceeeccCCceeEEEEcCCCCC-ceEEEEeCCHHHHHHHHHHHHHHHh
Q 002837 66 VNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDG-RAFTLKAETSEDLYEWKTALELALA 125 (875)
Q Consensus 66 ~~i~Lg~I~L~~~~sV~~~~~Kk~~fiIt~~~~~g-Rty~LqAdTeeE~~eWv~AI~~al~ 125 (875)
..++|..+.+..... ..+.+.++|.+.. .+| .+++|+|++..++..|+.+|..++.
T Consensus 206 ~~ipL~m~~~tR~~~--~~d~~~~~fev~s--~dG~~t~~l~~~d~~~a~~W~~ai~~~i~ 262 (263)
T 1z87_A 206 KHVSLKMAYVSRRCT--PTDPEPRYLEICA--ADGQDAVFLRAKDEASARSWAGAIQAQIG 262 (263)
T ss_dssp EEEESSSEEEEEECC--SSCSSSCEEEEEE--TTTTEEEEEECSSHHHHHHHHHHHHHHHC
T ss_pred cccCcceeeeeeecc--ccCCCCceEEEEC--CCCCeeEEEEECCHHHHHHHHHHHHHHhc
Confidence 345555555543221 2244677887764 234 5689999999999999999998874
No 132
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=67.25 E-value=41 Score=37.76 Aligned_cols=85 Identities=11% Similarity=0.129 Sum_probs=54.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC---CChhHHHHHHHHHHHHHHHHH
Q 002837 608 LQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRG---MDSKTRAELEEIALAEADVAR 684 (875)
Q Consensus 608 ~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~---lp~~~~~ll~eia~~E~~v~~ 684 (875)
||..|-+-...+...=..||.-|.+|+..-..=..|..+|....+. ++-+.|.. +-.+.+.+++||..+|..|..
T Consensus 25 i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~--~Q~~~~d~~e~~tq~skkml~~~~~~e~~~~~ 102 (409)
T 1m1j_C 25 IADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPS--EKQTLPQSIEQLTQKSKKIIEEIIRYENTILA 102 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS--STTCCSSCHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--ccCCCCCchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 4555665566666666667777777777777666777777776543 22233322 245777889999988886665
Q ss_pred HHHHHHHHHH
Q 002837 685 LKQKVAELHH 694 (875)
Q Consensus 685 Le~~v~~l~~ 694 (875)
-|.++..|+.
T Consensus 103 ~~~~i~~l~~ 112 (409)
T 1m1j_C 103 HENTIQQLTD 112 (409)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 5555555544
No 133
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=65.83 E-value=44 Score=29.36 Aligned_cols=55 Identities=27% Similarity=0.411 Sum_probs=36.1
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 613 ERRKQALHER--RLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVA 690 (875)
Q Consensus 613 ~~rk~~~~~~--r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~ 690 (875)
.+|-.|..++ |..=.+.+.+|++.|.+|.+-|. .||.-||.+|.++.+.|.
T Consensus 23 gKrEaA~Ee~YfrqkekEqL~~LKkkl~~el~~h~---------------------------~ei~~le~~i~rhk~~i~ 75 (84)
T 1gmj_A 23 GKREQAEEERYFRARAKEQLAALKKHKENEISHHA---------------------------KEIERLQKEIERHKQSIK 75 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHH
Confidence 4455555444 43334445667777777766554 677788888888888888
Q ss_pred HHHH
Q 002837 691 ELHH 694 (875)
Q Consensus 691 ~l~~ 694 (875)
.|..
T Consensus 76 ~l~~ 79 (84)
T 1gmj_A 76 KLKQ 79 (84)
T ss_dssp HHHH
T ss_pred Hhhh
Confidence 7764
No 134
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=64.55 E-value=9.4 Score=48.52 Aligned_cols=35 Identities=14% Similarity=0.285 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002837 617 QALHERRLALEQDVSRLQEQLQAERDLRAALEVGL 651 (875)
Q Consensus 617 ~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al 651 (875)
..+...+..|++++..|+.+|+++..-...|+..+
T Consensus 916 ~~l~~~~~~Le~~l~ele~elee~ee~l~el~~e~ 950 (1184)
T 1i84_S 916 VRLAAKKQELEEILHEMEARIEEEEERSQQLQAEK 950 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666777777777766666555554443
No 135
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=62.68 E-value=12 Score=27.64 Aligned_cols=28 Identities=21% Similarity=0.379 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 612 LERRKQALHERRLALEQDVSRLQEQLQA 639 (875)
Q Consensus 612 ~~~rk~~~~~~r~~LeqeV~~Lq~qL~~ 639 (875)
||-+=+.|-.+...||++|.||++-|-+
T Consensus 6 LE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 6 LKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 5666667888899999999999987753
No 136
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=62.59 E-value=21 Score=40.16 Aligned_cols=55 Identities=24% Similarity=0.318 Sum_probs=36.4
Q ss_pred hhhhhHHHHHHHHH--------Hhhhhh------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 587 LEITKNDLRHRIAK--------EARGNA------ILQASLERRKQALHERRLALEQDVSRLQEQLQAER 641 (875)
Q Consensus 587 ~~~~~~~~~~~~~~--------~~~~n~------~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~ 641 (875)
.++.-..||.+|++ |++.|. .||++|++.+.+-..|-.+||-+|.+|..+|++-+
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (471)
T 3mq9_A 395 ARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDAS 463 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445557777743 222222 28888888877766666778888888888887643
No 137
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=62.18 E-value=65 Score=29.85 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 621 ERRLALEQDVSRLQEQLQAERDLRAALEV 649 (875)
Q Consensus 621 ~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~ 649 (875)
..|..+|.|+..|++.|..+.-.|.-||.
T Consensus 62 ~~r~~~E~di~~lrK~lD~~~l~r~dLE~ 90 (119)
T 3ol1_A 62 LQREEAENTLQSFRQDVDNASLARLDLER 90 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHHH
Confidence 34666777777777777666666665554
No 138
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=61.08 E-value=10 Score=27.57 Aligned_cols=27 Identities=15% Similarity=0.306 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 612 LERRKQALHERRLALEQDVSRLQEQLQ 638 (875)
Q Consensus 612 ~~~rk~~~~~~r~~LeqeV~~Lq~qL~ 638 (875)
||-+=..+-.+..+||.||.+|+.-|.
T Consensus 6 LEdKVEeLl~~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 6 IEXKLEXILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 556666777888999999999998764
No 139
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=60.38 E-value=80 Score=39.79 Aligned_cols=17 Identities=12% Similarity=0.171 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHhcC
Q 002837 287 RRLLQRILRMMHTISSH 303 (875)
Q Consensus 287 ~~lL~~Ll~~L~~Va~~ 303 (875)
-.++.||+..++.-...
T Consensus 409 ~~LF~wlV~~iN~~l~~ 425 (1080)
T 2dfs_A 409 ANLFNWIVDHVNKALHS 425 (1080)
T ss_dssp HHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 47788888888775553
No 140
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=60.30 E-value=14 Score=27.29 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 612 LERRKQALHERRLALEQDVSRLQEQLQ 638 (875)
Q Consensus 612 ~~~rk~~~~~~r~~LeqeV~~Lq~qL~ 638 (875)
||-+=..+-.+...||++|.||++-|-
T Consensus 6 LE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 6 LEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 555666777888999999999998764
No 141
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=59.81 E-value=11 Score=27.24 Aligned_cols=27 Identities=15% Similarity=0.368 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 612 LERRKQALHERRLALEQDVSRLQEQLQ 638 (875)
Q Consensus 612 ~~~rk~~~~~~r~~LeqeV~~Lq~qL~ 638 (875)
||-+=+.+-.+..+||.||.+|+.-|.
T Consensus 5 LEdKvEeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 5 IEXKLXEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 566666777888999999999998764
No 142
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=59.11 E-value=11 Score=27.34 Aligned_cols=28 Identities=29% Similarity=0.481 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 611 SLERRKQALHERRLALEQDVSRLQEQLQ 638 (875)
Q Consensus 611 ~~~~rk~~~~~~r~~LeqeV~~Lq~qL~ 638 (875)
.||.+=..|-.+-..||+||.||+.-|.
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 3677777888899999999999987653
No 143
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=59.06 E-value=29 Score=34.31 Aligned_cols=26 Identities=19% Similarity=0.130 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 624 LALEQDVSRLQEQLQAERDLRAALEV 649 (875)
Q Consensus 624 ~~LeqeV~~Lq~qL~~E~~l~~~Le~ 649 (875)
.+||+-+..||..+..-..-+.+|+.
T Consensus 44 ~~~E~~~rELq~~~~~L~~~k~~Lek 69 (168)
T 3o0z_A 44 SQLESLNRELQERNRILENSKSQTDK 69 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555544444444444
No 144
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=59.04 E-value=19 Score=29.07 Aligned_cols=35 Identities=29% Similarity=0.392 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002837 618 ALHERRLALEQDVSRLQEQLQAERDLRAALEVGLS 652 (875)
Q Consensus 618 ~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~ 652 (875)
++++.=.+|.||..+|++-|++|+.-|.-||..+-
T Consensus 14 aLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vr 48 (56)
T 2w6b_A 14 ALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVR 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777788999999999999999999999998663
No 145
>2adz_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} SCOP: b.55.1.1
Probab=58.72 E-value=13 Score=37.05 Aligned_cols=39 Identities=13% Similarity=0.219 Sum_probs=29.5
Q ss_pred CCceeEEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002837 86 DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (875)
Q Consensus 86 ~Kk~~fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~ 125 (875)
..+.+|.|...+ ...+.+|+|.+..++..|+.+|...+.
T Consensus 139 ~e~r~fEv~s~D-G~~t~iLrc~D~a~a~~Wf~aI~sni~ 177 (178)
T 2adz_A 139 PEPRYLEICAAD-GQDAVFLRAKDEASARSWAGAIQAQIG 177 (178)
T ss_dssp CSSCEEEEEETT-TTEEEEECCSSHHHHHHHHHHHHHHHT
T ss_pred CCccEEEEEcCC-CCeeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 355577665321 245899999999999999999998763
No 146
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=58.56 E-value=86 Score=30.55 Aligned_cols=33 Identities=27% Similarity=0.398 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002837 619 LHERRLALEQDVSRLQEQLQAERDLRAALEVGL 651 (875)
Q Consensus 619 ~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al 651 (875)
+...+...+.++.+|+.+|.+|+..|...|...
T Consensus 49 l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~ 81 (154)
T 2ocy_A 49 LKRELSDRDDEVKRLREDIAKENELRTKAEEEA 81 (154)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566788999999999999999998666543
No 147
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=58.55 E-value=82 Score=35.91 Aligned_cols=31 Identities=6% Similarity=0.240 Sum_probs=17.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 607 ILQASLERRKQALHERRLALEQDVSRLQEQL 637 (875)
Q Consensus 607 ~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL 637 (875)
.||++++.+.....+....+.+-...|+++.
T Consensus 125 ~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~ 155 (464)
T 1m1j_B 125 MIDNKLVKTQKQRKDNDIILSEYNTEMELHY 155 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 4788887776666665555444444444333
No 148
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=57.92 E-value=16 Score=26.58 Aligned_cols=28 Identities=29% Similarity=0.455 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 611 SLERRKQALHERRLALEQDVSRLQEQLQ 638 (875)
Q Consensus 611 ~~~~rk~~~~~~r~~LeqeV~~Lq~qL~ 638 (875)
.||.|=..|-.+..+||.+|.+|+.-|.
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 4666777788888999999999987663
No 149
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=57.66 E-value=1.5e+02 Score=29.33 Aligned_cols=110 Identities=16% Similarity=0.139 Sum_probs=60.5
Q ss_pred HHHHHhHhhhhhHHH----HHHHHHHhhhh-hhhhhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 580 EELAIQRLEITKNDL----RHRIAKEARGN-AILQASLERRKQAL-------HERRLALEQDVSRLQEQLQAERDLRAAL 647 (875)
Q Consensus 580 ~~~~~~~~~~~~~~~----~~~~~~~~~~n-~~~q~~~~~rk~~~-------~~~r~~LeqeV~~Lq~qL~~E~~l~~~L 647 (875)
.-..+++|-.+=+.| +.++....-.+ +.||.++.+|+..+ ..-+.+||++...|+.++..=..-..-+
T Consensus 10 ~~~~l~~Lq~~i~~l~~~~~~~~~e~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~ 89 (174)
T 2p22_A 10 HHEMLQNLQTVVNELYREDVDYVADKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKV 89 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566665554444 34444444444 45889989888874 4445556666666665533211111122
Q ss_pred HHhhcCC-CCCCC------CCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 002837 648 EVGLSMS-SGQFS------SSRGMDSKTRAELEEIALAEADVARLKQKV 689 (875)
Q Consensus 648 e~al~~~-~~~~~------~~~~lp~~~~~ll~eia~~E~~v~~Le~~v 689 (875)
+.-...+ .+... .+.-+-.+.-++++|...+|..|-.|.+=+
T Consensus 90 ~e~~~~~~~~~~diD~~v~~~~~l~~Qll~l~Aed~AieDaIy~L~~al 138 (174)
T 2p22_A 90 QQFSSTSHVDDEDVNSIAVAKTDGLNQLYNLVAQDYALTDTIECLSRML 138 (174)
T ss_dssp HHHTTSSCCCSSCGGGTEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCChhhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2212112 12211 223344678899999999999988877643
No 150
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=57.58 E-value=1.5e+02 Score=29.16 Aligned_cols=11 Identities=36% Similarity=0.715 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 002837 626 LEQDVSRLQEQ 636 (875)
Q Consensus 626 LeqeV~~Lq~q 636 (875)
|+.++.+++.+
T Consensus 95 ~~~~~~~~~~~ 105 (284)
T 1c1g_A 95 FEEELDRAQER 105 (284)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 151
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=55.18 E-value=15 Score=26.77 Aligned_cols=28 Identities=14% Similarity=0.414 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 611 SLERRKQALHERRLALEQDVSRLQEQLQ 638 (875)
Q Consensus 611 ~~~~rk~~~~~~r~~LeqeV~~Lq~qL~ 638 (875)
.||-+=..+-.+...||+||.||++-|.
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHc
Confidence 3566667777888999999999998664
No 152
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=54.69 E-value=20 Score=26.14 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 612 LERRKQALHERRLALEQDVSRLQEQL 637 (875)
Q Consensus 612 ~~~rk~~~~~~r~~LeqeV~~Lq~qL 637 (875)
||-+=+.|-.+...||++|.+|++-|
T Consensus 6 LEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 6 LADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 55566677788899999999998865
No 153
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=54.54 E-value=1.2e+02 Score=29.42 Aligned_cols=113 Identities=19% Similarity=0.274 Sum_probs=51.0
Q ss_pred cCCCCcccCCCChhHHHHHhHhhhhhHHHHHHHHHHhh-------hhhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 566 RKTSSVESIDSSGEEELAIQRLEITKNDLRHRIAKEAR-------GNAILQASL-ERRKQALHERRLALEQDVSRLQEQL 637 (875)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~n~~~q~~~-~~rk~~~~~~r~~LeqeV~~Lq~qL 637 (875)
|-++-+.++|.. .+.|| ..|..+..+...=.+ +|++-|-.. ...-..+...+..|++.+..|++.|
T Consensus 18 ~~~~~~~~md~~-----l~~rL-~~Rd~~E~~~~~l~~e~~~~~~~~~vs~~~~~~~~I~~L~~El~~l~~ki~dLeeel 91 (152)
T 3a7p_A 18 RSNPQTDSMDDL-----LIRRL-TDRNDKEAHLNELFQDNSGAIGGNIVSHDDALLNTLAILQKELKSKEQEIRRLKEVI 91 (152)
T ss_dssp ---------------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCcchhHHHH-----HHHHH-HHhhhHHHHHHHHHHhhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666655 55554 234555555432222 232222211 2233355666777888888888777
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002837 638 QAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (875)
Q Consensus 638 ~~E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~ 701 (875)
++=..+-.+|...+. .|=.+..++|..+.+|+++=..|=.++-+...
T Consensus 92 ~eK~K~~e~l~DEl~-----------------aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~ 138 (152)
T 3a7p_A 92 ALKNKNTERLNAALI-----------------SGTIENNVLQQKLSDLKKEHSQLVARWLKKTE 138 (152)
T ss_dssp HHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776666666655443 67777888888888888877777666655544
No 154
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=54.54 E-value=23 Score=24.88 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 674 EIALAEADVARLKQKVAELHHQLNQ 698 (875)
Q Consensus 674 eia~~E~~v~~Le~~v~~l~~~l~~ 698 (875)
|||.|-.||+-|++++..|++.+-.
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaa 27 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAA 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666665543
No 155
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=54.53 E-value=1e+02 Score=30.99 Aligned_cols=113 Identities=19% Similarity=0.199 Sum_probs=69.7
Q ss_pred HHhHhhhhhHHH---HHHHHHHhhhhhhhhhhHHHHHH----------------------------------------HH
Q 002837 583 AIQRLEITKNDL---RHRIAKEARGNAILQASLERRKQ----------------------------------------AL 619 (875)
Q Consensus 583 ~~~~~~~~~~~~---~~~~~~~~~~n~~~q~~~~~rk~----------------------------------------~~ 619 (875)
+|..|...=.+| |..|..|++.|+.|.+.++..=+ ..
T Consensus 20 Li~~L~~kL~~L~~eqe~l~ee~~~N~~lG~~vea~V~~~c~P~E~eKy~~FigDLekVv~LLLsLs~RLaRvenaL~~~ 99 (190)
T 3thf_A 20 LIKHLNQKIVSLKREQQTISEECSANDRLGQDLFAKLAEKVRPSEASKFRTHVDAVGNITSLLLSLSERLAQTESSLETR 99 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHccC
Confidence 444444444333 56788999999998877754322 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHhhcCCCCCCC-CCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 002837 620 HERRLALEQDVSRLQEQLQAERD-----------LRAALEVGLSMSSGQFS-SSRGMDSKTRAELEEIALAEADVARLKQ 687 (875)
Q Consensus 620 ~~~r~~LeqeV~~Lq~qL~~E~~-----------l~~~Le~al~~~~~~~~-~~~~lp~~~~~ll~eia~~E~~v~~Le~ 687 (875)
++-|..|.+--..|+.|+.+=+. ++.+|.+.|.. ..+. .-.++-.| -+||+|-.-|++-|--.|+
T Consensus 100 ~~Er~sL~~K~~~L~~Q~EDAkeLKe~ldRRe~~V~~iL~~~L~~--eql~DY~~fv~mK-a~Ll~eqReLddkIklgeE 176 (190)
T 3thf_A 100 QQERGALESKRDLLYEQMEEAQRLKSDIERRGVSIAGLLAKNLSA--DMCADYDYFINMK-AKLIADARDLAVRIKGSEE 176 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH--HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHH-HHHHHHHHhHHHHHHhhHH
Confidence 45577788888888988876544 45555554431 0111 11222223 3688899999999999999
Q ss_pred HHHHHHHHHHH
Q 002837 688 KVAELHHQLNQ 698 (875)
Q Consensus 688 ~v~~l~~~l~~ 698 (875)
|+..|+..|-|
T Consensus 177 QL~~L~~sL~q 187 (190)
T 3thf_A 177 QLSSLSDALVQ 187 (190)
T ss_dssp HHHHHTTC---
T ss_pred HHHHHHHhhcc
Confidence 98888766544
No 156
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=54.04 E-value=58 Score=36.55 Aligned_cols=84 Identities=19% Similarity=0.258 Sum_probs=52.0
Q ss_pred hhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 002837 608 LQASLERRKQAL-HERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLK 686 (875)
Q Consensus 608 ~q~~~~~rk~~~-~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le 686 (875)
++.++.+|.... -+.=.+|.++-..|+.++++=+.-|..+.+.+....| ..+.+|++++..|-++|..||
T Consensus 14 ~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~---------~~~~~l~~~~~~~~~~~~~~~ 84 (421)
T 1ses_A 14 FHRAIREKGVALDLEALLALDREVQELKKRLQEVQTERNQVAKRVPKAPP---------EEKEALIARGKALGEEAKRLE 84 (421)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCH---------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---------ccHHHHHHHHHHHHHHHHHHH
Confidence 344444443321 2233344444444444444444556666666654211 467889999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 002837 687 QKVAELHHQLNQQR 700 (875)
Q Consensus 687 ~~v~~l~~~l~~~~ 700 (875)
+++..+..+|...-
T Consensus 85 ~~~~~~~~~~~~~~ 98 (421)
T 1ses_A 85 EALREKEARLEALL 98 (421)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998886554
No 157
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=53.70 E-value=9.5 Score=25.86 Aligned_cols=21 Identities=38% Similarity=0.379 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 002837 667 KTRAELEEIALAEADVARLKQ 687 (875)
Q Consensus 667 ~~~~ll~eia~~E~~v~~Le~ 687 (875)
+.-.|-.|||.||-||+-|||
T Consensus 8 knarlkqeiaaleyeiaaleq 28 (28)
T 3ra3_B 8 KNARLKQEIAALEYEIAALEQ 28 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-
T ss_pred hhhHHHHHHHHHHHHHHHhcC
Confidence 344577889999999988875
No 158
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=53.55 E-value=53 Score=29.78 Aligned_cols=58 Identities=22% Similarity=0.310 Sum_probs=49.2
Q ss_pred HHHHHhHhhhhhHHHHHHH-HHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 580 EELAIQRLEITKNDLRHRI-AKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQL 637 (875)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~-~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL 637 (875)
+-.+-+|||..|.+-+..| .-|++..+||...=.+-+.-.-+||..++.+|.+.+.+-
T Consensus 15 E~~L~~~lE~Ar~eA~~~v~~AEAeA~ril~eAe~~a~~l~ae~r~~~~~Et~ri~~ea 73 (105)
T 3v6i_B 15 EKQLLERLEAAKKEAEERVKRAEAEAKALLEEAEAKAKALEAQYRERERAETEALLARY 73 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457789999999999999 569999999999877777777899999999999887654
No 159
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=53.16 E-value=42 Score=25.46 Aligned_cols=42 Identities=29% Similarity=0.520 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 624 LALEQDVSRLQEQLQ--AERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAE 691 (875)
Q Consensus 624 ~~LeqeV~~Lq~qL~--~E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~ 691 (875)
.+||.||+.|...-+ +-++||. +.| ||-||.+|++|-+++.+
T Consensus 6 aqlenevaslenenetlkkknlhk-----------------------kdl---iaylekeianlrkkiee 49 (49)
T 3he5_A 6 AQLENEVASLENENETLKKKNLHK-----------------------KDL---IAYLEKEIANLRKKIEE 49 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHH---HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhhcccHHHHHhcccH-----------------------HHH---HHHHHHHHHHHHHHhcC
No 160
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=52.95 E-value=20 Score=26.50 Aligned_cols=27 Identities=30% Similarity=0.351 Sum_probs=21.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 665 DSKTRAELEEIALAEADVARLKQKVAE 691 (875)
Q Consensus 665 p~~~~~ll~eia~~E~~v~~Le~~v~~ 691 (875)
-.++.+||.+..-||.+|.+|+.-+.+
T Consensus 7 E~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 7 EAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 356778999999999999999876644
No 161
>1fho_A UNC-89; pleckstrin homology domain, electrostatics, muscle, signal transduction, signaling protein; NMR {Caenorhabditis elegans} SCOP: b.55.1.1
Probab=52.60 E-value=25 Score=32.65 Aligned_cols=99 Identities=15% Similarity=0.193 Sum_probs=57.7
Q ss_pred ceEEEeeeeeeccCCCCCCcEEEEEEEeCCeeeEecCCCCCC-CCCCceeeeeeCceEeCCCcceeeccCCceeEEEEcC
Q 002837 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSAL-PQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPD 96 (875)
Q Consensus 18 ~V~KeG~L~l~KkG~~~ksWKKRWFVL~~~~L~YYKd~~~~~-p~~~~e~~i~Lg~I~L~~~~sV~~~~~Kk~~fiIt~~ 96 (875)
..++.|++.+.... +.=+.|++.|-...|.|.|...... +...-.-.+.+..+.|+.. ..++....|.+...
T Consensus 9 ~Ll~q~~f~V~~~~---~k~~eR~vFLFe~~ilf~K~~~~~~~~~Y~~K~~ikl~~~~lte~----~~~~d~~kFeiw~~ 81 (119)
T 1fho_A 9 RIIRHDAFQVWEGD---EPPKLRYVFLFRNKIMFTEQDASTSPPSYTHYSSIRLDKYNIRQH----TTDEDTIVLQPQEP 81 (119)
T ss_dssp CSSEEEEEEECSTT---CSCEEEEEEEETTEEEEEEECCSSSSCCCSSCCEEESSSCEEEEE----CTTCCEEEEECCST
T ss_pred CccccCceEEEeCC---CCcceEEEEEecCcEEEEEEecCCCCCcEEEeeEEeeceeEEEec----CCCCCCcEEEEccC
Confidence 35677766544321 2347899999999999999662110 0001112233333333321 11133345777643
Q ss_pred CCCCceEEE--EeCCHH-HHHHHHHHHHHHH
Q 002837 97 GRDGRAFTL--KAETSE-DLYEWKTALELAL 124 (875)
Q Consensus 97 ~~~gRty~L--qAdTee-E~~eWv~AI~~al 124 (875)
+. ...|.+ +|.|.+ ..+.|+..|+...
T Consensus 82 ~~-~~~~il~~qA~s~e~~K~~Wv~~I~~~~ 111 (119)
T 1fho_A 82 GL-PSFRIKPKDFETSEYVRKAWLRDIAEEQ 111 (119)
T ss_dssp TC-CCBCCCCCSSSSCSHHHHHHHHHHHTCC
T ss_pred CC-CceEEEeeecCCcHHHHHHHHHHHHHHH
Confidence 32 357788 999999 9999999999843
No 162
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=52.51 E-value=23 Score=25.66 Aligned_cols=26 Identities=12% Similarity=0.176 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 612 LERRKQALHERRLALEQDVSRLQEQL 637 (875)
Q Consensus 612 ~~~rk~~~~~~r~~LeqeV~~Lq~qL 637 (875)
||-+=+.+-.+...||+||.+|++-|
T Consensus 5 LEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 5 LEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 55666677788899999999998765
No 163
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=50.89 E-value=1.4e+02 Score=27.51 Aligned_cols=68 Identities=15% Similarity=0.148 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 620 HERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (875)
Q Consensus 620 ~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~ 699 (875)
|.-=-.|.-++.+|+++|.++...|.-||..++. +..+==.+|+.|=+-|..=|+.+.+|+.-..|-
T Consensus 5 ~~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~-------------k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~ 71 (112)
T 1x79_B 5 RDQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQ-------------SSEDSSHQISALVLRAQASEILLEELQQGLSQA 71 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334568888999999999999999999998752 334445556666666666666666666555444
Q ss_pred H
Q 002837 700 R 700 (875)
Q Consensus 700 ~ 700 (875)
+
T Consensus 72 q 72 (112)
T 1x79_B 72 K 72 (112)
T ss_dssp H
T ss_pred H
Confidence 3
No 164
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=50.35 E-value=85 Score=29.39 Aligned_cols=61 Identities=23% Similarity=0.369 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 626 LEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (875)
Q Consensus 626 LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~ 699 (875)
|-.-|..|+-+|+.-+.++..||+.|.-. . ...=.++..+...|..||..+..++..+-++
T Consensus 43 lrr~iq~L~~el~~l~~~~~sLE~~l~e~------------e-~~~~~~l~~~q~~i~~lE~eL~~~r~em~~q 103 (131)
T 3tnu_A 43 LRRTMQNLEIELQSQLSMKASLENSLEET------------K-GRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQ 103 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHH------------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55567788888888888899999887411 1 1122345566666677777777776666555
No 165
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=49.76 E-value=79 Score=27.91 Aligned_cols=55 Identities=22% Similarity=0.289 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 626 LEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEE----IALAEADVARLKQKVAELHHQLNQ 698 (875)
Q Consensus 626 LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~e----ia~~E~~v~~Le~~v~~l~~~l~~ 698 (875)
||+..+.|++++++|..++.--|+-+ +-+.+ .+-|+.++.....++.+||.+|..
T Consensus 23 le~~r~~ir~eI~KElKiKeGaENL~------------------katt~~kk~~~~V~~eL~~sn~kl~~L~~eL~e 81 (86)
T 1cxz_B 23 LELERERLRREIRKELKLKEGAENLR------------------RATTDLGRSLGPVELLLRGSSRRLDLLHQQLQE 81 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHhHHHHH------------------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666677777776666555432 22222 456788888889999999988854
No 166
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=49.24 E-value=34 Score=32.68 Aligned_cols=48 Identities=25% Similarity=0.464 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002837 624 LALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQH 702 (875)
Q Consensus 624 ~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~~ 702 (875)
...+.++.+|+.+|.+|+..|...| .+...++++|.+|-..||.|-|.
T Consensus 42 ~~~~~e~~~L~~~l~eE~~~R~~aE-------------------------------~~~~~ie~ElE~LTasLFeEAN~ 89 (135)
T 2e7s_A 42 SDRDDEVKRLREDIAKENELRTKAE-------------------------------EEADKLNKEVEDLTASLFDEANN 89 (135)
T ss_dssp TTHHHHHHTHHHHHHHTTSHHHHHH-------------------------------HTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578889999999999999988554 44555666677777777776654
No 167
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=49.24 E-value=22 Score=26.80 Aligned_cols=25 Identities=36% Similarity=0.575 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 673 EEIALAEADVARLKQKVAELHHQLN 697 (875)
Q Consensus 673 ~eia~~E~~v~~Le~~v~~l~~~l~ 697 (875)
+|+|.||.++.-||+++..|+..|.
T Consensus 20 eelaaleselqalekklaalksklq 44 (48)
T 1g6u_A 20 EELAALESELQALEKKLAALKSKLQ 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999887764
No 168
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=48.92 E-value=55 Score=41.55 Aligned_cols=25 Identities=36% Similarity=0.498 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 618 ALHERRLALEQDVSRLQEQLQAERD 642 (875)
Q Consensus 618 ~~~~~r~~LeqeV~~Lq~qL~~E~~ 642 (875)
.+.++...|+++...|+.+|++|+.
T Consensus 882 ele~~l~~Le~e~~~l~~~L~~e~~ 906 (1184)
T 1i84_S 882 ELEQKHTQLCEEKNLLQEKLQAETE 906 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555554433
No 169
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=48.31 E-value=68 Score=37.66 Aligned_cols=51 Identities=20% Similarity=0.217 Sum_probs=34.2
Q ss_pred HHHhhhhhhhhhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 599 AKEARGNAILQASL-----ERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEV 649 (875)
Q Consensus 599 ~~~~~~n~~~q~~~-----~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~ 649 (875)
.++..+++||||-- ++....-+.++.+.|++...|+++..+...+-.+=++
T Consensus 467 ~~~~~~~~ilq~d~~l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~ 522 (592)
T 1f5n_A 467 SKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKER 522 (592)
T ss_dssp HTHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667888888753 5556666777788888888887776655555444333
No 170
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=47.81 E-value=55 Score=28.51 Aligned_cols=50 Identities=24% Similarity=0.339 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
Q 002837 590 TKNDLRHRIAKEARGNAILQASLERRKQ----------ALHERRLALEQDVSRLQEQLQA 639 (875)
Q Consensus 590 ~~~~~~~~~~~~~~~n~~~q~~~~~rk~----------~~~~~r~~LeqeV~~Lq~qL~~ 639 (875)
..-+||+....|++.=..+|--|.+=|. ....+-..|+.|+.+|++++.+
T Consensus 11 ~~leLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 11 TLRELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3447888888888887777777654444 3345566799999999999987
No 171
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=47.26 E-value=2.2e+02 Score=28.05 Aligned_cols=73 Identities=22% Similarity=0.328 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHH
Q 002837 616 KQALHERRLALEQDVSRLQEQLQAERD------------LRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVA 683 (875)
Q Consensus 616 k~~~~~~r~~LeqeV~~Lq~qL~~E~~------------l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~ 683 (875)
.+...+.+.+||+|-++|++ +..|++ ||..|-.|-+ .+++.-.=.=|++|++..+
T Consensus 22 ek~~~~k~~~le~ek~~l~~-~e~~r~k~~~h~~~k~~qlre~~d~gtt------------~~~i~~m~~yI~llrErea 88 (169)
T 3k29_A 22 EKVVKEKRRLLELEQEKLRE-RESERDKVKNHYMQKIRQLREQLDDGTT------------SDAILKMKAYIKVVAIQLS 88 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCC------------cHHHHHHHHHHHHHHHHHH
Confidence 34556677778887777764 233332 3444444322 2345555556888888888
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 002837 684 RLKQKVAELHHQLNQQRQ 701 (875)
Q Consensus 684 ~Le~~v~~l~~~l~~~~~ 701 (875)
.||++|.+...++-.++.
T Consensus 89 ~lEqkVaeq~e~Ve~e~q 106 (169)
T 3k29_A 89 EEEEKVNKQKENVLAASK 106 (169)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888777766654
No 172
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=46.94 E-value=22 Score=25.95 Aligned_cols=27 Identities=11% Similarity=0.325 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 612 LERRKQALHERRLALEQDVSRLQEQLQ 638 (875)
Q Consensus 612 ~~~rk~~~~~~r~~LeqeV~~Lq~qL~ 638 (875)
||-+=..+-.+..+||.||++|++-|.
T Consensus 6 LEdKvEeLl~~~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 6 IEDKLEEILSKGHHICNELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHhc
Confidence 455566777788899999999998664
No 173
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=46.63 E-value=44 Score=29.52 Aligned_cols=26 Identities=31% Similarity=0.362 Sum_probs=22.4
Q ss_pred hhHHHHHhHhhhhhHHHHHHHHHHhh
Q 002837 578 GEEELAIQRLEITKNDLRHRIAKEAR 603 (875)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 603 (875)
+.|-..-++||..|..|+..|.||.|
T Consensus 14 ~~d~~~q~~le~~r~~ir~eI~KElK 39 (86)
T 1cxz_B 14 LAAPGVQQQLELERERLRREIRKELK 39 (86)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456679999999999999999998
No 174
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=46.19 E-value=34 Score=25.27 Aligned_cols=27 Identities=33% Similarity=0.315 Sum_probs=22.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 665 DSKTRAELEEIALAEADVARLKQKVAE 691 (875)
Q Consensus 665 p~~~~~ll~eia~~E~~v~~Le~~v~~ 691 (875)
-.|+.+||.+-.-||.+|.+|...+.+
T Consensus 7 E~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 7 KAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 357779999999999999999887654
No 175
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=45.10 E-value=31 Score=39.67 Aligned_cols=44 Identities=16% Similarity=0.220 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHH
Q 002837 623 RLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVA 683 (875)
Q Consensus 623 r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~ 683 (875)
=.+||+.+..|+..++..+..-++|+..|. +++.+|--||.+|.
T Consensus 112 S~ELRRrIqyLKekVdnQlsnIrvLQsnLe-----------------dq~~kIQRLEvDId 155 (562)
T 3ghg_A 112 SEDLRSRIEVLKRKVIEKVQHIQLLQKNVR-----------------AQLVDMKRLEVDID 155 (562)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHH
Confidence 346888888888888888877788887765 88888888888874
No 176
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=44.76 E-value=76 Score=36.52 Aligned_cols=66 Identities=20% Similarity=0.239 Sum_probs=44.0
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhcccccchhhhhcc
Q 002837 663 GMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQHHYGSLSDACDRYQNVQNHNSQQRFLQ 728 (875)
Q Consensus 663 ~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 728 (875)
+|-.++..-|..|++|+.-|.++=.+|.-|...+--+....-|+-.-+.....-+..++.+||-+.
T Consensus 121 yLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLe 186 (562)
T 3ghg_A 121 VLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLE 186 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHH
Confidence 455666777788899999888888888888888888877666654444433344444444444443
No 177
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=44.62 E-value=84 Score=35.27 Aligned_cols=73 Identities=16% Similarity=0.289 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 621 ERRLALEQDVSRLQEQLQAERDLRAALEVGLSM--SSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQ 695 (875)
Q Consensus 621 ~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~--~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~ 695 (875)
+.=.+|.++-..|+.++++=+.-|.++...+.. ..| .-...|=.+++++=++|+.||+++..+|+++..+-..
T Consensus 30 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (425)
T 2dq3_A 30 DKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREG--KDTTEIQNRVKELKEEIDRLEEELRKVEEELKNTLLW 104 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSC--SCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445555555555555555556666666643 222 1112344455555555555555555555555444433
No 178
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=44.29 E-value=29 Score=25.18 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=20.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHH
Q 002837 665 DSKTRAELEEIALAEADVARLKQK 688 (875)
Q Consensus 665 p~~~~~ll~eia~~E~~v~~Le~~ 688 (875)
-.|+.+||.+..-||.+|.+|..-
T Consensus 6 EdKVEell~~~~~le~EV~Rl~~l 29 (33)
T 2wq1_A 6 EDKIEENTSKIYHNTNEIARNTKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 357889999999999999999754
No 179
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=43.85 E-value=1.4e+02 Score=29.60 Aligned_cols=32 Identities=16% Similarity=0.156 Sum_probs=21.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 665 DSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (875)
Q Consensus 665 p~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~ 699 (875)
+.++++|..||+.|..+ |..+-.+++.++..+
T Consensus 112 eakI~aL~~Ei~~Lr~q---L~~~R~k~~~em~Ke 143 (175)
T 3lay_A 112 TAKINAVAKEMESLGQK---LDEQRVKRDVAMAQA 143 (175)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHh
Confidence 46788888888877776 555556666666554
No 180
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=42.31 E-value=27 Score=25.35 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=20.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHH
Q 002837 664 MDSKTRAELEEIALAEADVARLKQ 687 (875)
Q Consensus 664 lp~~~~~ll~eia~~E~~v~~Le~ 687 (875)
|-.++.+||.|-.-||.||.+|..
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 345777999999999999999875
No 181
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=42.04 E-value=1.7e+02 Score=32.91 Aligned_cols=89 Identities=16% Similarity=0.181 Sum_probs=55.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC-CCCChhHHHHHHHHHHHHHHHHHHH
Q 002837 608 LQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSS-RGMDSKTRAELEEIALAEADVARLK 686 (875)
Q Consensus 608 ~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~-~~lp~~~~~ll~eia~~E~~v~~Le 686 (875)
||..|-+....-..-=.+||..|.+|-..=.+=..+=.+|...+....-+.+.- ..+-.+.+..|+||..+|.-|.+.+
T Consensus 25 l~d~L~kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~~ 104 (411)
T 3ghg_C 25 IADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTHD 104 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhH
Confidence 455565555555555666777777777666666667777776664332111110 2244566778999988888887777
Q ss_pred HHHHHHHHHH
Q 002837 687 QKVAELHHQL 696 (875)
Q Consensus 687 ~~v~~l~~~l 696 (875)
.++..|+..|
T Consensus 105 ~~i~~l~~~~ 114 (411)
T 3ghg_C 105 SSIRYLQEIY 114 (411)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7666665544
No 182
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=41.79 E-value=1e+02 Score=35.00 Aligned_cols=34 Identities=15% Similarity=0.170 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 667 KTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (875)
Q Consensus 667 ~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~ 700 (875)
.+.+|++++..|-++|..||+++.++..+|...-
T Consensus 70 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (455)
T 2dq0_A 70 PVDELLAKSREIVKRIGELENEVEELKKKIDYYL 103 (455)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999888886654
No 183
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=40.96 E-value=54 Score=37.61 Aligned_cols=34 Identities=15% Similarity=0.165 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002837 668 TRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (875)
Q Consensus 668 ~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~ 701 (875)
+.+|++|+..|-++|..||+++.++..+|.+.--
T Consensus 73 ~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~ 106 (485)
T 3qne_A 73 AKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKIN 106 (485)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999999998888876543
No 184
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=40.89 E-value=1.4e+02 Score=27.70 Aligned_cols=61 Identities=11% Similarity=0.219 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 626 LEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (875)
Q Consensus 626 LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~ 699 (875)
|-..|..|+-+|+.=+..+..||+.|.-. .. ..=.++..+...|..||..+..++..+-++
T Consensus 41 lrr~iq~L~~el~~l~~~~~~LE~~l~e~------------e~-~~~~~l~~~q~~i~~lE~eL~~~r~e~~~q 101 (129)
T 3tnu_B 41 MNRMIQRLRAEIDNVKKQCANLQNAIADA------------EQ-RGELALKDARNKLAELEEALQKAKQDMARL 101 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH------------HH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44556788888888888899999887511 11 112245556666666666666666665554
No 185
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=40.17 E-value=50 Score=25.34 Aligned_cols=30 Identities=10% Similarity=0.324 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 670 AELEEIALAEADVARLKQKVAELHHQLNQQ 699 (875)
Q Consensus 670 ~ll~eia~~E~~v~~Le~~v~~l~~~l~~~ 699 (875)
+||.-|.-+-.||++-|+++.+|+.+|-+-
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeL 35 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQL 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888889999999999999988877653
No 186
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=38.83 E-value=72 Score=28.00 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 613 ERRKQALHERRLALEQDVSRLQEQLQ 638 (875)
Q Consensus 613 ~~rk~~~~~~r~~LeqeV~~Lq~qL~ 638 (875)
+-|...|-..+..||..|..|+.+|.
T Consensus 62 Ee~~~~L~~~K~eLE~~l~el~~rl~ 87 (89)
T 3bas_A 62 EDKVEELLSKNYHLENEVARLKKLVG 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56666666666677777776666553
No 187
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=38.59 E-value=1.3e+02 Score=32.16 Aligned_cols=65 Identities=15% Similarity=0.177 Sum_probs=44.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHH
Q 002837 609 QASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELE 673 (875)
Q Consensus 609 q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~ 673 (875)
|+.+-.++..++..+.+|.+++.+|..+-..=.....+|++--....-.|..+..+-..++..|+
T Consensus 12 ~~~~~e~r~~lr~~~eql~~~i~~L~~~ap~W~~aq~al~rL~eq~g~~~~ds~~v~~~mq~~Le 76 (302)
T 3ibp_A 12 VSNAREERMALRQEQEQLQSRIQSLMQRAPVWLAAQNSLNQLSEQCGEEFTSSQDVTEYLQQLLE 76 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHH
Confidence 34445667788888889999999999888887788888877655444455544445555555554
No 188
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=38.58 E-value=1.6e+02 Score=26.04 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 670 AELEEIALAEADVARLKQKVAELHHQ 695 (875)
Q Consensus 670 ~ll~eia~~E~~v~~Le~~v~~l~~~ 695 (875)
.+-.|-+-||.++.+|...+.+|+..
T Consensus 67 ~~~~ek~~l~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 67 QLTNDKARVEVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445555666666666666666554
No 189
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=38.34 E-value=34 Score=24.99 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=20.2
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHH
Q 002837 664 MDSKTRAELEEIALAEADVARLKQ 687 (875)
Q Consensus 664 lp~~~~~ll~eia~~E~~v~~Le~ 687 (875)
|-.|+.+||.+-.-||.||++|..
T Consensus 6 LEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 6 IEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 345778999999999999999975
No 190
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=37.24 E-value=31 Score=38.57 Aligned_cols=42 Identities=29% Similarity=0.316 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 002837 612 LERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSM 653 (875)
Q Consensus 612 ~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~ 653 (875)
+++++.++.+.-..|++++.+|+++|.+|..+|+-|.+-+..
T Consensus 15 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~e 56 (403)
T 4etp_A 15 LKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQE 56 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567777888889999999999999999999999887743
No 191
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=37.23 E-value=37 Score=24.76 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=20.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHH
Q 002837 665 DSKTRAELEEIALAEADVARLKQK 688 (875)
Q Consensus 665 p~~~~~ll~eia~~E~~v~~Le~~ 688 (875)
-.|+.+||.+-..||.+|.+|..-
T Consensus 7 EdKVEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 7 EXKLEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHH
Confidence 357779999999999999998753
No 192
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=37.09 E-value=3.4e+02 Score=27.28 Aligned_cols=121 Identities=10% Similarity=0.081 Sum_probs=73.0
Q ss_pred hhHHHHHhHhhhhhHHHHHHHH---------HHhhhhhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 578 GEEELAIQRLEITKNDLRHRIA---------KEARGNAILQ-ASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAAL 647 (875)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~n~~~q-~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~L 647 (875)
.+=+.+|.+.++-..+|..+-. .+.....--. ..+..|...+.++-..|.+-+..=+.+|++...++..+
T Consensus 48 ~~v~~llkkh~~~~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~I~~r~~~l~~~W~~L~~~~~~R~~~L~~~l~~~~~~ 127 (250)
T 1quu_A 48 TEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETI 127 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788899998888876542 1211111111 24566777777777777777777777777777666433
Q ss_pred HHh--------------hcCCCCCCC--CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q 002837 648 EVG--------------LSMSSGQFS--SSRGMDSKTRAELEEIALAEADVARLKQKVAEL---HHQLNQ 698 (875)
Q Consensus 648 e~a--------------l~~~~~~~~--~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l---~~~l~~ 698 (875)
+.+ |...-..+. ....-+..++.||..+..++.++..++.++..+ +.++.+
T Consensus 128 d~l~~qF~~~a~~~~~Wl~~~e~~l~~~~~~~d~e~v~~ll~~h~~~~~~l~~~~~~~~~i~~l~~~~~~ 197 (250)
T 1quu_A 128 DQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEK 197 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTTCCCCCCSTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 111111111 123335589999999999998888888555444 555443
No 193
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=36.92 E-value=2.2e+02 Score=28.02 Aligned_cols=117 Identities=15% Similarity=0.112 Sum_probs=63.8
Q ss_pred HHHHHhHhhhhhHHHHH----HHHHHhhhhhhh----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 580 EELAIQRLEITKNDLRH----RIAKEARGNAIL----------QASLERRKQALHERRLALEQDVSRLQEQLQAERDLRA 645 (875)
Q Consensus 580 ~~~~~~~~~~~~~~~~~----~~~~~~~~n~~~----------q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~ 645 (875)
=+..+.+.+.-+.+|.. ||. .-|..- -..+..|...++.+-..|.+-+..=+.+|+.-..++.
T Consensus 36 v~~l~~k~~~f~~el~~~~~~~v~---~v~~~~~~L~~~~~~~~~~i~~~~~~l~~~W~~L~~~~~~R~~~L~~a~~~~~ 112 (218)
T 3edu_A 36 VTLLRDKFRDFARETGAIGQERVD---NVNAFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHR 112 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHH---HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888754 232 112111 1345666777777777777777777777766555554
Q ss_pred HHHHhhc------CCCCCCCC-CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 646 ALEVGLS------MSSGQFSS-SRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (875)
Q Consensus 646 ~Le~al~------~~~~~~~~-~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~ 699 (875)
....+-. .....++. ...=+..+++|+.....+|.++..++.+|..|...-.+-
T Consensus 113 F~~~~~e~~~Wl~ek~~~l~~~~g~dl~~v~~l~~~h~~~e~dL~~~~~~v~~l~~~a~~L 173 (218)
T 3edu_A 113 YFYTGAEILGLIDEKHRELPEDVGLDASTAESFHRVHTAFERELHLLGVQVQQFQDVATRL 173 (218)
T ss_dssp HHHHHHHHHHHHHHHHHCCC-------------CCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322210 00111221 122245678888888999999999999999887654443
No 194
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=36.30 E-value=69 Score=22.49 Aligned_cols=25 Identities=40% Similarity=0.421 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 669 RAELEEIALAEADVARLKQKVAELH 693 (875)
Q Consensus 669 ~~ll~eia~~E~~v~~Le~~v~~l~ 693 (875)
-.|-.|+|..|++--.|||+|..|.
T Consensus 4 aqlekevaqaeaenyqleqevaqle 28 (33)
T 1fmh_A 4 AQLEKEVAQAEAENYQLEQEVAQLE 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3456788888888888888887654
No 195
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=35.38 E-value=88 Score=27.40 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 669 RAELEEIALAEADVARLKQKVAELHHQL 696 (875)
Q Consensus 669 ~~ll~eia~~E~~v~~Le~~v~~l~~~l 696 (875)
+.|-.+|..++++|+.|++....|+--.
T Consensus 49 ~~Lh~~ie~l~eEi~~lk~en~eL~ela 76 (83)
T 1uii_A 49 EKLHKEIEQKDNEIARLKKENKELAEVA 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667778888888888888776543
No 196
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=35.15 E-value=63 Score=24.94 Aligned_cols=31 Identities=19% Similarity=0.407 Sum_probs=23.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 608 LQASLERRKQALHERRLALEQDVSRLQEQLQ 638 (875)
Q Consensus 608 ~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~ 638 (875)
|++-+..|...+.+|-.+||.-++.|+.+|+
T Consensus 10 lvsel~~r~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 10 MISDLNERSEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777788888888888888777775
No 197
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=34.97 E-value=53 Score=26.81 Aligned_cols=45 Identities=31% Similarity=0.328 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 616 KQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAE 691 (875)
Q Consensus 616 k~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~ 691 (875)
++.-.++-..||.+|..|..+-. +|-.+|..|+.+|..|.+.+..
T Consensus 17 R~rKk~~~~~Le~~v~~L~~~n~-------------------------------~L~~~v~~L~~e~~~Lk~~l~~ 61 (62)
T 1jnm_A 17 RKRKLERIARLEEKVKTLKAQNS-------------------------------ELASTANMLREQVAQLKQKVMN 61 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHHHHHh
No 198
>1urf_A Protein kinase C-like 1; transferase, G-protein, HR1 domain, helical, coiled coil, ATP-binding, serine/threonine-protein kinase, phosphorylation; NMR {Homo sapiens} SCOP: a.2.6.1 PDB: 2rmk_B*
Probab=34.72 E-value=99 Score=26.97 Aligned_cols=67 Identities=25% Similarity=0.241 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 002837 627 EQDVSRLQEQLQAERDLRAALEVGLSM-SSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQHHY 704 (875)
Q Consensus 627 eqeV~~Lq~qL~~E~~l~~~Le~al~~-~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~~~~~ 704 (875)
++-+..|++||.-|..++.=.|+.+.. ..| +.+-+.||+|--.+=.| =..||.-||.|+.+-.+.+.
T Consensus 7 ~~rl~~L~kqL~IElkVK~GAENmi~~y~~g--------~~~drKlLaeAQqmL~D---Sk~KIe~lRmqI~k~~q~~~ 74 (81)
T 1urf_A 7 LSRVAGLEKQLAIELKVKQGAENMIQTYSNG--------STKDRKLLLTAQQMLQD---SKTKIDIIRMQLRRALQADQ 74 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--------SSCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------CchhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcc
Confidence 456889999999999999999998853 222 33457788776544333 56788889999877544443
No 199
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens}
Probab=34.59 E-value=2.2e+02 Score=27.34 Aligned_cols=113 Identities=14% Similarity=0.136 Sum_probs=67.5
Q ss_pred HHHHhHhhhhhHHHHHH---HH-HHhhhhhhhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 002837 581 ELAIQRLEITKNDLRHR---IA-KEARGNAILQ------ASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALE-- 648 (875)
Q Consensus 581 ~~~~~~~~~~~~~~~~~---~~-~~~~~n~~~q------~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le-- 648 (875)
+.++++-+.-+.+|..+ +. -...|+..++ ..+..|-..+++++.+|.+-...=+.+|++=..++....
T Consensus 40 e~ll~~H~~~~~ei~~~~~~~~~l~~~G~~L~~~~~~~~~~i~~~l~~L~~~w~~L~~~w~~r~~~L~~~l~l~~F~~d~ 119 (185)
T 3lbx_B 40 ELLMKYHQGINAEIETRSKNFSACLELGESLLQRQHQASEEIREKLQQVMSRRKEMNEKWEARWERLRMLLEVCQFSRDA 119 (185)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 44566666666666333 31 1112343333 346777778888888887777766666665444332111
Q ss_pred ----HhhcCCCCCC---CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 649 ----VGLSMSSGQF---SSSRGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (875)
Q Consensus 649 ----~al~~~~~~~---~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~ 694 (875)
.-|...-..| .++ .-...+.+||.+-..+|.++..-+.+|..|..
T Consensus 120 ~~~~~Wl~~~e~~L~~~~~g-~sl~~ve~LlkkH~~fe~~l~~~~e~i~~L~~ 171 (185)
T 3lbx_B 120 SVAEAWLIAQEPYLASGDFG-HTVDSVEKLIKRHEAFEKSTASWAERFAALEK 171 (185)
T ss_dssp HHHHHHHHHHHHHHHCCCCC-SSHHHHHHHHHHHHHHHHHHHHTHHHHHHHHS
T ss_pred HHHHHHHHHhHhhhccCCCC-CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Confidence 1111111111 122 23457899999999999999999999999875
No 200
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=34.46 E-value=2.2e+02 Score=25.36 Aligned_cols=25 Identities=12% Similarity=0.337 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 615 RKQALHERRLALEQDVSRLQEQLQA 639 (875)
Q Consensus 615 rk~~~~~~r~~LeqeV~~Lq~qL~~ 639 (875)
+-..++..+..|+.++..|++.|..
T Consensus 18 ~l~~L~~~~~~l~~~i~~l~~~l~~ 42 (112)
T 1l8d_A 18 ERNEITQRIGELKNKIGDLKTAIEE 42 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666677777777766643
No 201
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=33.64 E-value=1.6e+02 Score=25.88 Aligned_cols=83 Identities=13% Similarity=0.165 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----CCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 618 ALHERRLALEQDVSRLQEQLQAERDLRAALEVGLS-----MSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAEL 692 (875)
Q Consensus 618 ~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~-----~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l 692 (875)
.++.+...|.+....|+.++++=..+-..|+..=. +.-|.+-+....+.-...|=..+..++.+|..||.++..+
T Consensus 12 ~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~ 91 (107)
T 1fxk_A 12 QLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERV 91 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666666654444445544321 1122221222233333334444555666666666666666
Q ss_pred HHHHHHHH
Q 002837 693 HHQLNQQR 700 (875)
Q Consensus 693 ~~~l~~~~ 700 (875)
..++..-+
T Consensus 92 ~~~l~~lk 99 (107)
T 1fxk_A 92 MKKLQEMQ 99 (107)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
No 202
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=33.53 E-value=93 Score=24.33 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=30.5
Q ss_pred hHHHHHhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHH
Q 002837 579 EEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRK 616 (875)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk 616 (875)
+=|.-|+|||.+=.-||.|.|+=.-+...-|..+..|=
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRi 39 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRL 39 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778999999999999999987777777777765543
No 203
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=33.48 E-value=2.5e+02 Score=28.12 Aligned_cols=26 Identities=31% Similarity=0.517 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 613 ERRKQALHERRLALEQDVSRLQEQLQ 638 (875)
Q Consensus 613 ~~rk~~~~~~r~~LeqeV~~Lq~qL~ 638 (875)
++|-+.+..+-..|..||..++.+++
T Consensus 55 Ek~~~~L~~~~~~L~~E~e~~k~K~~ 80 (189)
T 2v71_A 55 EQRNRDLQADNQRLKYEVEALKEKLE 80 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555544443
No 204
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=33.29 E-value=1.4e+02 Score=26.30 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=15.0
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002837 602 ARGNAILQASLERRKQALHERRLALEQDVSRL 633 (875)
Q Consensus 602 ~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~L 633 (875)
.|-|...+-|=++||.. =.++++.|..|
T Consensus 21 ~rNN~AarrSR~krk~r----~~e~~~r~~~L 48 (87)
T 1hjb_A 21 ERNNIAVRKSRDKAKMR----NLETQHKVLEL 48 (87)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 37777777775544432 23444444433
No 205
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=33.10 E-value=53 Score=28.29 Aligned_cols=48 Identities=38% Similarity=0.506 Sum_probs=30.5
Q ss_pred HhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 586 RLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQL 637 (875)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL 637 (875)
.|...|+||=.|+.+=.-++.+||.-++..++ -|..|++-|..|.+.|
T Consensus 27 aLnvvk~DLI~rvdELt~E~e~l~~El~s~~~----~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 27 ALNIVKNDLIAKVDELTCEKDVLQGELEAVKQ----AKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 47788999999999888899999988765443 3444555555555444
No 206
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=32.99 E-value=2.7e+02 Score=24.90 Aligned_cols=43 Identities=35% Similarity=0.452 Sum_probs=29.2
Q ss_pred hhhhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 002837 603 RGNAILQAS-LERRKQALHERRLALEQDVSRLQEQLQ-AERDLRA 645 (875)
Q Consensus 603 ~~n~~~q~~-~~~rk~~~~~~r~~LeqeV~~Lq~qL~-~E~~l~~ 645 (875)
+.||+=.+- ++...+....++..+|+||..|+++++ -|-+|-.
T Consensus 18 ~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~ 62 (101)
T 3u1c_A 18 KENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQ 62 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 455554333 245567778889999999999999986 3444443
No 207
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=32.11 E-value=2.6e+02 Score=26.52 Aligned_cols=20 Identities=15% Similarity=0.267 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002837 670 AELEEIALAEADVARLKQKV 689 (875)
Q Consensus 670 ~ll~eia~~E~~v~~Le~~v 689 (875)
+|-.+|..|+..+.+||.++
T Consensus 114 ~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 114 ELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443
No 208
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=31.83 E-value=42 Score=26.64 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 002837 681 DVARLKQKVAELHHQLNQQRQH 702 (875)
Q Consensus 681 ~v~~Le~~v~~l~~~l~~~~~~ 702 (875)
+++.||++-.+|+-|||++|-.
T Consensus 14 ~l~~LEkqF~~LkEqlY~ERl~ 35 (49)
T 2xus_A 14 EMLDLEKQFSELKEKLFRERLS 35 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888889999998863
No 209
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=31.74 E-value=1.1e+02 Score=35.16 Aligned_cols=35 Identities=14% Similarity=0.145 Sum_probs=23.4
Q ss_pred hHHHH----HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002837 667 KTRAE----LEE-IALAEADVARLKQKVAELHHQLNQQRQ 701 (875)
Q Consensus 667 ~~~~l----l~e-ia~~E~~v~~Le~~v~~l~~~l~~~~~ 701 (875)
.+.+| ++| +..|-++|..||+++..+..+|.+.--
T Consensus 100 ~~~~l~~~~~~~~~~~l~~~i~~le~~~~~~~~~~~~~l~ 139 (484)
T 3lss_A 100 QVEQLCVLQLKQLSKDLSDQVAGLAKEAQQLEEERDKLML 139 (484)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567 788 888888888888888888887775543
No 210
>3hie_A Protein PSL1, exocyst complex component SEC3; PH domain, dimer, domain swapping, phosphate-binding, coiled coil, exocytosis; 2.00A {Saccharomyces cerevisiae}
Probab=30.75 E-value=3.2e+02 Score=26.94 Aligned_cols=80 Identities=16% Similarity=0.146 Sum_probs=49.9
Q ss_pred cEEEEEEEeC-----CeeeEecCCCCCCCCCCceeeeeeC-ceEeCCCcceeeccCCceeEEEEcCCCCCceEEEEeCCH
Q 002837 37 WKKRWFILTR-----TSLVFFKNDPSALPQRGGEVNLTLG-GIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETS 110 (875)
Q Consensus 37 WKKRWFVL~~-----~~L~YYKd~~~~~p~~~~e~~i~Lg-~I~L~~~~sV~~~~~Kk~~fiIt~~~~~gRty~LqAdTe 110 (875)
=|.||.+|.- +.+..||.+.... +.+ .+| .=+|.....|........-|+++. ++.|+.+|.+.
T Consensus 64 KK~R~L~lav~~~~sgrV~lhK~K~N~n----gsf--siGkTW~L~ELk~Ie~~~~~~~gF~ltl----~K~Y~W~a~s~ 133 (171)
T 3hie_A 64 KKKRLLILSAKPNNAKLIQIHKARENSD----GSF--QIGRTWQLTELVRVEKDLEISEGFILTM----SKKYYWETNSA 133 (171)
T ss_dssp EEEEEEEEEECTTCTTCEEEEEEEECTT----SCE--EEEEEEEGGGCCEEEECSSCTTEEEEES----SSEEEEECSSH
T ss_pred ccceEEEEEEecCCCceEEEEEEEECCC----CcE--EeeeeeecccceeeeccCCCCCcEEEEe----CCeEEEecCCH
Confidence 4788877742 3567777655442 111 111 122332222222222355688886 39999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 002837 111 EDLYEWKTALELALAQ 126 (875)
Q Consensus 111 eE~~eWv~AI~~al~~ 126 (875)
.|...++..|-+...+
T Consensus 134 ~Er~~FI~sL~K~y~k 149 (171)
T 3hie_A 134 KERTVFIKSLITLYIQ 149 (171)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999888764
No 211
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=30.68 E-value=1.7e+02 Score=26.09 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 673 EEIALAEADVARLKQKVAELHHQLNQQ 699 (875)
Q Consensus 673 ~eia~~E~~v~~Le~~v~~l~~~l~~~ 699 (875)
.+|..||..+.+++.++.+|+.+|++-
T Consensus 84 ~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 84 VRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555554
No 212
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=30.47 E-value=1.6e+02 Score=22.61 Aligned_cols=16 Identities=38% Similarity=0.318 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 002837 671 ELEEIALAEADVARLK 686 (875)
Q Consensus 671 ll~eia~~E~~v~~Le 686 (875)
|-.|||-||.+|+.-|
T Consensus 36 lrdeiarlenevashe 51 (52)
T 3he5_B 36 LRDEIARLENEVASHE 51 (52)
T ss_dssp HHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhhcc
Confidence 4456666666665443
No 213
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=29.66 E-value=1.9e+02 Score=32.30 Aligned_cols=95 Identities=11% Similarity=0.019 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCCC-CCCChhHHHHHHHHHHHHHHHHHHH
Q 002837 609 QASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLS-MSSGQFSSS-RGMDSKTRAELEEIALAEADVARLK 686 (875)
Q Consensus 609 q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~-~~~~~~~~~-~~lp~~~~~ll~eia~~E~~v~~Le 686 (875)
....++.+..+.+.+.+|||.|.++|+.++++..--..+...++ ........+ ..+-.-.+..=+..+-+|.+..+.+
T Consensus 355 ~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (487)
T 3oja_A 355 VTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAI 434 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhchhhhcccccccCcHHHHHHHHHHHHHHHHHHHHHhhcch
Q ss_pred HHHHHHHHHHHHHHhhh
Q 002837 687 QKVAELHHQLNQQRQHH 703 (875)
Q Consensus 687 ~~v~~l~~~l~~~~~~~ 703 (875)
+.+...+.++.+.+.++
T Consensus 435 ~~~~~~~~~~~~~~~~~ 451 (487)
T 3oja_A 435 RDWDMYQHKETQLAEEN 451 (487)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHh
No 214
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Probab=29.45 E-value=1e+02 Score=37.69 Aligned_cols=24 Identities=21% Similarity=0.065 Sum_probs=21.7
Q ss_pred eEEEEeCCHHHHHHHHHHHHHHHh
Q 002837 102 AFTLKAETSEDLYEWKTALELALA 125 (875)
Q Consensus 102 ty~LqAdTeeE~~eWv~AI~~al~ 125 (875)
.+.|.|.+.++++.|+..|+..+.
T Consensus 119 ~l~LvA~s~e~A~~W~~gL~~L~~ 142 (816)
T 3qr0_A 119 WTHLVAENSSVAKKWSEEVFSYAY 142 (816)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHT
T ss_pred EEEEeeCCHHHHHHHHHHHHHHHH
Confidence 448999999999999999999875
No 215
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Probab=29.14 E-value=72 Score=38.83 Aligned_cols=36 Identities=3% Similarity=-0.087 Sum_probs=27.3
Q ss_pred eEEEEcCCCC--CceEEEEeCCHHHHHHHHHHHHHHHh
Q 002837 90 LTVLFPDGRD--GRAFTLKAETSEDLYEWKTALELALA 125 (875)
Q Consensus 90 ~fiIt~~~~~--gRty~LqAdTeeE~~eWv~AI~~al~ 125 (875)
||.|...... -+.+.|.|.+.++++.|+..|+..+.
T Consensus 98 ~fTIvyg~~~~~l~~L~lvA~s~~ea~~Wv~GL~~L~~ 135 (799)
T 2zkm_X 98 TLTVVSGPDMVDLTFHNFVSYKENVGKAWAEDVLALVK 135 (799)
T ss_dssp EEEEEECSSSSSCEEEEEEESSSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCccceeEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 5655543211 23689999999999999999999886
No 216
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=29.10 E-value=32 Score=23.32 Aligned_cols=19 Identities=47% Similarity=0.522 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002837 674 EIALAEADVARLKQKVAEL 692 (875)
Q Consensus 674 eia~~E~~v~~Le~~v~~l 692 (875)
|-..||..|+-|+|++.+|
T Consensus 8 endaleqkiaalkqkiasl 26 (28)
T 3ra3_A 8 ENDALEQKIAALKQKIASL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHh
Confidence 3334444555555555444
No 217
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=28.75 E-value=62 Score=23.49 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=19.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHH
Q 002837 665 DSKTRAELEEIALAEADVARLKQK 688 (875)
Q Consensus 665 p~~~~~ll~eia~~E~~v~~Le~~ 688 (875)
-.|+.+||.+=..||.+|.+|..-
T Consensus 6 EdKvEeLl~~~~~Le~EV~RLk~l 29 (33)
T 3c3g_A 6 EXKLXEIXSKXYHXENXLARIKXL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 357789999999999999998753
No 218
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene}
Probab=28.47 E-value=1.2e+02 Score=31.51 Aligned_cols=50 Identities=30% Similarity=0.440 Sum_probs=28.4
Q ss_pred HHHhhhhhhhhhh---------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHHH
Q 002837 599 AKEARGNAILQAS---------LERRKQALHERRLALEQDV-SRLQEQLQAERDL-RAALE 648 (875)
Q Consensus 599 ~~~~~~n~~~q~~---------~~~rk~~~~~~r~~LeqeV-~~Lq~qL~~E~~l-~~~Le 648 (875)
++||+-|+..++. +.++=.+-.+||-.-|.+| ..|.+...+|+.+ +.|++
T Consensus 127 aeeVRr~~~~~~~~~~k~~~eei~~KLeaAeErRk~qea~~Lk~LaekrEHe~eVlqka~e 187 (240)
T 4f61_I 127 AEEVRQRAIEENNNWIKMAKEKLAQKMESNKENRKYQEAELLKHLAEKREHEREVIQRAIE 187 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777766655 2333334466665555554 4565666666655 44444
No 219
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=27.81 E-value=74 Score=29.65 Aligned_cols=33 Identities=33% Similarity=0.499 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 668 TRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (875)
Q Consensus 668 ~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~ 700 (875)
-+++|+...-.|.||..|..++.+|+..|..+.
T Consensus 6 ~~~~~~~~~~~e~e~~~l~~~~~el~~~l~~~~ 38 (125)
T 1joc_A 6 RRALLERCLKGEGEIEKLQTKVLELQRKLDNTT 38 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 368899999999999999999999999996553
No 220
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=27.79 E-value=1.7e+02 Score=26.85 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002837 618 ALHERRLALEQDVSRLQEQLQ 638 (875)
Q Consensus 618 ~~~~~r~~LeqeV~~Lq~qL~ 638 (875)
.+++...+|+++|..||.|++
T Consensus 87 kl~~eKe~L~~ql~~Lq~q~~ 107 (110)
T 2v4h_A 87 KLVEKKEYLQEQLEQLQREFN 107 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhHHHHHHHHHHHHHHHHH
Confidence 345666677777777777764
No 221
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=27.68 E-value=80 Score=25.18 Aligned_cols=30 Identities=37% Similarity=0.433 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002837 672 LEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (875)
Q Consensus 672 l~eia~~E~~v~~Le~~v~~l~~~l~~~~~ 701 (875)
|.=-.-+|-.|.+||+.|++|-..|+.+..
T Consensus 4 ~~~aefAERsV~KLek~ID~LEdeL~~eKe 33 (52)
T 2z5i_A 4 LSKNYHLENEVARLKKLVDDLEDELYAQKL 33 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 333345688999999999999999888754
No 222
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=26.96 E-value=3.1e+02 Score=31.45 Aligned_cols=35 Identities=14% Similarity=0.049 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 666 SKTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (875)
Q Consensus 666 ~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~ 700 (875)
..+.+|++|+..|-++|..||+++.++..+|...-
T Consensus 116 ~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l 150 (501)
T 1wle_A 116 PQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRA 150 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999988888887654
No 223
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=26.95 E-value=95 Score=22.71 Aligned_cols=25 Identities=8% Similarity=0.217 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 613 ERRKQALHERRLALEQDVSRLQEQL 637 (875)
Q Consensus 613 ~~rk~~~~~~r~~LeqeV~~Lq~qL 637 (875)
+-.=+.+-.+...|+.||.+|++-|
T Consensus 7 edKvEel~~~~~~l~nEv~Rl~~lL 31 (34)
T 2r2v_A 7 ADKLEEVASKLYHNANELARVAKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3444556667788999999998866
No 224
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=26.76 E-value=2.2e+02 Score=24.66 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=23.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 665 DSKTRAELEEIALAEADVARLKQKVAEL 692 (875)
Q Consensus 665 p~~~~~ll~eia~~E~~v~~Le~~v~~l 692 (875)
+.++.+++.+++.++.++..++..=.+|
T Consensus 55 ~~~~~~l~~~l~~~e~eLe~~~erWeeL 82 (89)
T 2lw1_A 55 HEQTQKVLADMAAAEQELEQAFERWEYL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999988888776665
No 225
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=26.62 E-value=1.2e+02 Score=26.19 Aligned_cols=16 Identities=25% Similarity=0.360 Sum_probs=10.7
Q ss_pred hhhhhhhhhhHHHHHH
Q 002837 602 ARGNAILQASLERRKQ 617 (875)
Q Consensus 602 ~~~n~~~q~~~~~rk~ 617 (875)
.|-|+..+-+=++||.
T Consensus 21 ~rNN~AakrSR~krk~ 36 (78)
T 1gu4_A 21 ERNNIAVRKSRDKAKM 36 (78)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHH
Confidence 3778888877555554
No 226
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=26.44 E-value=2.1e+02 Score=26.67 Aligned_cols=51 Identities=25% Similarity=0.297 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 002837 625 ALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQ 687 (875)
Q Consensus 625 ~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~ 687 (875)
.|.+|+.+|..+|.. +++=|..|..+. =.....++..||+.|+.+|.+|..
T Consensus 7 ~~K~Eiq~L~drLD~---~~rKlaaa~~rg---------d~~~i~qf~~E~~~l~k~I~~lk~ 57 (123)
T 2lf0_A 7 VEKNEIKRLSDRLDA---IRHQQADLSLVE---------AADKYAELEKEKATLEAEIARLRE 57 (123)
T ss_dssp SHHHHHHHHHHHHHH---HHHHHHHSCTTT---------CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHhCC---------CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888888888875 555566665432 123445555666666666555544
No 227
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=26.35 E-value=87 Score=25.07 Aligned_cols=35 Identities=14% Similarity=0.118 Sum_probs=30.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 664 MDSKTRAELEEIALAEADVARLKQKVAELHHQLNQ 698 (875)
Q Consensus 664 lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~ 698 (875)
-+..+-+|..|++-|-..|..|.+++.+|+.+|.+
T Consensus 17 ~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 17 ENPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36778899999999999999999999999988753
No 228
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=25.93 E-value=1.1e+02 Score=21.40 Aligned_cols=28 Identities=32% Similarity=0.360 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 668 TRAELEEIALAEADVARLKQKVAELHHQ 695 (875)
Q Consensus 668 ~~~ll~eia~~E~~v~~Le~~v~~l~~~ 695 (875)
.-+|-.|||.|-.||+-|+=++..|++.
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalkqg 31 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALKQG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3466678888888888888888777654
No 229
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=25.86 E-value=64 Score=25.04 Aligned_cols=13 Identities=46% Similarity=0.580 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 002837 675 IALAEADVARLKQ 687 (875)
Q Consensus 675 ia~~E~~v~~Le~ 687 (875)
||-||.+|++||.
T Consensus 40 ianlekdianler 52 (56)
T 3he4_A 40 IANLEKDIANLER 52 (56)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 230
>3pk1_B Apoptosis regulator BAX; BCL-2 family fold, regulation of apoptosis, mitochondri apoptosis-apoptosis regulator complex; 2.49A {Homo sapiens} PDB: 3pl7_C 2xa0_C
Probab=25.79 E-value=32 Score=25.12 Aligned_cols=17 Identities=35% Similarity=0.407 Sum_probs=14.8
Q ss_pred HHHHHHhhhhhhhhhhH
Q 002837 596 HRIAKEARGNAILQASL 612 (875)
Q Consensus 596 ~~~~~~~~~n~~~q~~~ 612 (875)
.||+.|.-+|+-||-.+
T Consensus 17 ~~IgDEld~N~ELQrmi 33 (34)
T 3pk1_B 17 KRIGDELDSNMELQRMI 33 (34)
T ss_dssp HHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcccHHHHHhh
Confidence 58999999999999653
No 231
>3a98_B Engulfment and cell motility protein 1; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} PDB: 2vsz_A
Probab=25.78 E-value=2.6e+02 Score=28.17 Aligned_cols=34 Identities=15% Similarity=0.262 Sum_probs=27.7
Q ss_pred eEEEEcCCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002837 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (875)
Q Consensus 90 ~fiIt~~~~~gRty~LqAdTeeE~~eWv~AI~~al~ 125 (875)
.|-+... .+..+-|.|.|..+...|++-|+-.+.
T Consensus 117 aFSii~~--~~~~L~fvA~s~~~~~~W~DGL~~Llg 150 (203)
T 3a98_B 117 AFSILYD--SNCQLNFIAPDKHEYCIWTDGLNALLG 150 (203)
T ss_dssp EEEEEET--TTEEEEEECSSHHHHHHHHHHHHHHTT
T ss_pred EEEEecC--CCceEEEecCCHHHHHHHHHHHHHHhc
Confidence 5655543 347899999999999999999998875
No 232
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=25.68 E-value=1.4e+02 Score=24.56 Aligned_cols=21 Identities=14% Similarity=0.097 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002837 618 ALHERRLALEQDVSRLQEQLQ 638 (875)
Q Consensus 618 ~~~~~r~~LeqeV~~Lq~qL~ 638 (875)
|-..||.-=.+....|+.+.+
T Consensus 13 AA~R~R~KKk~~~~~le~~~~ 33 (63)
T 1ci6_A 13 AATRYRQKKRAEQEALTGECK 33 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445556555556665555543
No 233
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=25.64 E-value=4.1e+02 Score=24.67 Aligned_cols=26 Identities=15% Similarity=0.382 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 675 IALAEADVARLKQKVAELHHQLNQQR 700 (875)
Q Consensus 675 ia~~E~~v~~Le~~v~~l~~~l~~~~ 700 (875)
|.-|+.||..|.+++.+.--.+-+.|
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr 98 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLR 98 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555554444444444443
No 234
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=25.54 E-value=1.3e+02 Score=26.19 Aligned_cols=37 Identities=19% Similarity=0.470 Sum_probs=29.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 664 MDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (875)
Q Consensus 664 lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~~ 700 (875)
|-.|++.++..|++|.-+|.-|+++-..|..+..+-+
T Consensus 11 LE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~ 47 (81)
T 2jee_A 11 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQ 47 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4468899999999999999999999888766555533
No 235
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=25.43 E-value=1.2e+02 Score=30.68 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 670 AELEEIALAEADVARLKQKVAELHH 694 (875)
Q Consensus 670 ~ll~eia~~E~~v~~Le~~v~~l~~ 694 (875)
.|-.+|..++++|+.|+++...|+-
T Consensus 119 ~Lh~~ie~l~eEi~~LkeEn~eLke 143 (209)
T 2wvr_A 119 KLHKEIEQKDNEIARLKKENKELAE 143 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555566666666666655554
No 236
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=25.32 E-value=1.6e+02 Score=29.99 Aligned_cols=55 Identities=24% Similarity=0.293 Sum_probs=34.6
Q ss_pred HhhhhhHHHHHHH-----HHHhhhhhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 586 RLEITKNDLRHRI-----AKEARGNAILQ---ASLERRKQALHERRLALEQDVSRLQEQLQAE 640 (875)
Q Consensus 586 ~~~~~~~~~~~~~-----~~~~~~n~~~q---~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E 640 (875)
+|+.+-++|+.++ +|+..+++.++ .-|...|...|+.+..|.+++.++++.+..|
T Consensus 150 ~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KIR~lq~~Ll~~~~~~~~~~~~~ 212 (213)
T 1ik9_A 150 RLLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTKIRSLHNKLLNAAQEREKDIKQE 212 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 4444445555554 45555555544 3446777778888888888888888777654
No 237
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=25.08 E-value=3.6e+02 Score=23.88 Aligned_cols=36 Identities=33% Similarity=0.417 Sum_probs=26.3
Q ss_pred hhhhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 603 RGNAILQAS-LERRKQALHERRLALEQDVSRLQEQLQ 638 (875)
Q Consensus 603 ~~n~~~q~~-~~~rk~~~~~~r~~LeqeV~~Lq~qL~ 638 (875)
+.||+=.+- ++...+....+...+|++|.-|+++++
T Consensus 18 ~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq 54 (101)
T 3u59_A 18 KENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLK 54 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 555554443 245566778888999999999999886
No 238
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=24.90 E-value=1.1e+02 Score=24.77 Aligned_cols=31 Identities=23% Similarity=0.249 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 666 SKTRAELEEIALAEADVARLKQKVAELHHQL 696 (875)
Q Consensus 666 ~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l 696 (875)
.++..|=.+...|..+|..|+.++..|+..|
T Consensus 29 ~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 29 KKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 239
>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae}
Probab=24.61 E-value=2.1e+02 Score=30.86 Aligned_cols=83 Identities=16% Similarity=0.154 Sum_probs=51.1
Q ss_pred CCCcEEEEEEEeC-----CeeeEecCCCCCCCCCCceeeeeeC-ceEeCCCcceeeccCCceeEEEEcCCCCCceEEEEe
Q 002837 34 WKSWKKRWFILTR-----TSLVFFKNDPSALPQRGGEVNLTLG-GIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKA 107 (875)
Q Consensus 34 ~ksWKKRWFVL~~-----~~L~YYKd~~~~~p~~~~e~~i~Lg-~I~L~~~~sV~~~~~Kk~~fiIt~~~~~gRty~LqA 107 (875)
.+.-|.||.+|.- +.+..||.+.... +. +.++ .-+|.....|........-|+|+. ++.||.+|
T Consensus 131 ~kkKK~R~LcLaV~~d~sGRV~LhKaKeN~n----gs--FsIGKTW~L~ELk~Id~~~~~~~gF~LTl----~K~YyW~A 200 (320)
T 3a58_A 131 LENKKKRLLILSAKPNNAKLIQIHKARENSD----GS--FQIGRTWQLTELVRVEKDLEISEGFILTM----SKKYYWET 200 (320)
T ss_dssp GGGEEEEEEEEEECSSCTTCEEEEEEEECGG----GC--EEEEEEEEGGGCCEEEECSSCTTEEEEES----SSEEEEEE
T ss_pred ccccCceEEEEEEecCCCceEEEEEEEecCC----Cc--eEecceechhhhhhhhcccCCCCceEEEe----CCceEEec
Confidence 3456889987753 3477777655431 11 1111 122222222211013335688887 39999999
Q ss_pred CCHHHHHHHHHHHHHHHhh
Q 002837 108 ETSEDLYEWKTALELALAQ 126 (875)
Q Consensus 108 dTeeE~~eWv~AI~~al~~ 126 (875)
.+..|...|+..|-+...+
T Consensus 201 ~s~kER~~FI~sLvKiy~K 219 (320)
T 3a58_A 201 NSAKERTVFIKSLITLYIQ 219 (320)
T ss_dssp SSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 9999999999999888763
No 240
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=24.60 E-value=85 Score=21.31 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 674 EIALAEADVARLKQKVAELHHQLNQ 698 (875)
Q Consensus 674 eia~~E~~v~~Le~~v~~l~~~l~~ 698 (875)
||..||-|---|||++..|++.+-.
T Consensus 1 eidalefendaleqkiaalkqkias 25 (28)
T 3ra3_A 1 EIDALEFENDALEQKIAALKQKIAS 25 (28)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHhccHHHHHHHHHHHHHHHH
Confidence 4567888999999999999987653
No 241
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=24.58 E-value=2e+02 Score=32.11 Aligned_cols=53 Identities=15% Similarity=0.216 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 623 RLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (875)
Q Consensus 623 r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l~~~ 699 (875)
|..|+.||.+|++++++-..- .+++.+|++.+++.+...|.+-..||.+|-..
T Consensus 5 ~~~l~~el~~~~~~~~~l~~~------------------------~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l 57 (412)
T 3u06_A 5 HAALSTEVVHLRQRTEELLRC------------------------NEQQAAELETCKEQLFQSNMERKELHNTVMDL 57 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578888888888877654332 34556666666666555554444444444333
No 242
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=24.56 E-value=81 Score=35.33 Aligned_cols=44 Identities=16% Similarity=0.089 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 002837 613 ERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSG 656 (875)
Q Consensus 613 ~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~ 656 (875)
..|++.+.++..+++.+++.|++||.+|...|+-|.+.+....|
T Consensus 16 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~g 59 (412)
T 3u06_A 16 RQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRD 59 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45566677777778888888888888888888888887744333
No 243
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=24.21 E-value=69 Score=27.99 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 672 LEEIALAEADVARLKQKVAELHHQLNQ 698 (875)
Q Consensus 672 l~eia~~E~~v~~Le~~v~~l~~~l~~ 698 (875)
-.|+..||..|..||+++..|..+|..
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVAD 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 346778899999999999999988853
No 244
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Probab=24.16 E-value=6e+02 Score=26.10 Aligned_cols=117 Identities=15% Similarity=0.107 Sum_probs=57.7
Q ss_pred HHHHHhHhhhhhHHHHH-H---HHH-Hhhhhhhhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 580 EELAIQRLEITKNDLRH-R---IAK-EARGNAILQ------ASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALE 648 (875)
Q Consensus 580 ~~~~~~~~~~~~~~~~~-~---~~~-~~~~n~~~q------~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le 648 (875)
=+..+.+.+.-+.+|.. + |.. -..++..++ ..+..+...++.+-..|.+-+..-+.+|+....++....
T Consensus 145 v~~l~~~~~~f~~el~~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~W~~l~~~~~~r~~~L~~a~~~~~f~~ 224 (326)
T 3kbt_A 145 VTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFY 224 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777654 2 211 001111122 235666777888878888888877777777665555432
Q ss_pred Hh------hcCCCCCCCC-CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 649 VG------LSMSSGQFSS-SRGMDSKTRAELEEIALAEADVARLKQKVAELHHQL 696 (875)
Q Consensus 649 ~a------l~~~~~~~~~-~~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~l 696 (875)
.+ |......++. ...=+..++++|.....+|.+|..++.+|..|...-
T Consensus 225 ~~~e~~~Wl~ek~~~L~~~~~~d~~~~~~ll~~~~~~e~~l~~~~~~v~~l~~~a 279 (326)
T 3kbt_A 225 TGAEILGLIDEKHRELPEDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVA 279 (326)
T ss_dssp HHHHHHHHHHHHHHC---------------------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 0000011111 122234678999999999999999999999886543
No 245
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=23.97 E-value=2.1e+02 Score=23.52 Aligned_cols=56 Identities=27% Similarity=0.229 Sum_probs=31.4
Q ss_pred HHHHhHhhhhhHHHHHHHHHHhhhhhhhhhhHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 002837 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLE---RRKQALHERRLALEQDVSRLQEQ 636 (875)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~---~rk~~~~~~r~~LeqeV~~Lq~q 636 (875)
|-.|--||....+++.-++-..++=+-+...++ +|-..-++.=..||+.|.+|+..
T Consensus 5 ~~~~~~le~kl~~lEnIv~~l~~eve~~~~~lea~~rq~~~d~~~Ie~Le~kv~~l~~~ 63 (65)
T 3m0d_C 5 EKLLAELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSLEQRVVELQQT 63 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Confidence 556777899999999988754443333333333 22222223333466666666543
No 246
>3ulb_A Target of rapamycin complex 2 subunit AVO1; PH domain, membrane localization, membrane protein; 1.90A {Saccharomyces cerevisiae} PDB: 3ulc_A
Probab=23.53 E-value=3.7e+02 Score=25.07 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=24.6
Q ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHh
Q 002837 99 DGRAFTLKAETSEDLYEWKTALELALA 125 (875)
Q Consensus 99 ~gRty~LqAdTeeE~~eWv~AI~~al~ 125 (875)
..+.|.|.|.+.+|+.+=|..|+..+.
T Consensus 88 e~KrYdfEA~s~~ea~EIV~~ik~~~~ 114 (121)
T 3ulb_A 88 DIKRYYFEAVSGQECTEIVTRLQNLLS 114 (121)
T ss_dssp SCEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CcceeEEEeCCHHHHHHHHHHHHHHHH
Confidence 358999999999999999999999875
No 247
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=23.52 E-value=70 Score=24.67 Aligned_cols=22 Identities=18% Similarity=0.218 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002837 676 ALAEADVARLKQKVAELHHQLN 697 (875)
Q Consensus 676 a~~E~~v~~Le~~v~~l~~~l~ 697 (875)
..||.-|..||.|+++|+.+|.
T Consensus 19 e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 19 EDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999998874
No 248
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=22.98 E-value=91 Score=22.78 Aligned_cols=23 Identities=30% Similarity=0.265 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 002837 666 SKTRAELEEIALAEADVARLKQK 688 (875)
Q Consensus 666 ~~~~~ll~eia~~E~~v~~Le~~ 688 (875)
.++.+||.+=..||.+|.+|..-
T Consensus 8 ~kVEeLl~~n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 8 XKVXELLXKNXHLEXEVXRLKXL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHH
Confidence 46678999999999999888653
No 249
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=22.80 E-value=92 Score=22.79 Aligned_cols=25 Identities=20% Similarity=0.220 Sum_probs=20.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHH
Q 002837 664 MDSKTRAELEEIALAEADVARLKQK 688 (875)
Q Consensus 664 lp~~~~~ll~eia~~E~~v~~Le~~ 688 (875)
|-.|+.+||.+=..||.+|++|..-
T Consensus 6 LEdKvEeLl~~~~~L~~EV~RLk~l 30 (34)
T 2bni_A 6 IEDKLEEILSKGHHICNELARIKKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHH
Confidence 3457779999999999999998753
No 250
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=22.36 E-value=1.1e+02 Score=22.34 Aligned_cols=26 Identities=19% Similarity=0.119 Sum_probs=20.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHH
Q 002837 664 MDSKTRAELEEIALAEADVARLKQKV 689 (875)
Q Consensus 664 lp~~~~~ll~eia~~E~~v~~Le~~v 689 (875)
|-.++.+||.+=.-||.+|.+|..-+
T Consensus 6 LEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 6 LADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 34577799999999999999987644
No 251
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=21.53 E-value=3.3e+02 Score=23.73 Aligned_cols=62 Identities=26% Similarity=0.230 Sum_probs=35.4
Q ss_pred HHhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 002837 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQ-AERDLRAALE 648 (875)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~~rk~~~~~~r~~LeqeV~~Lq~qL~-~E~~l~~~Le 648 (875)
-|+.+=.|=.-||-.|.+-=-.|+.|..- ...++..|.+|.++..+|+.+.. -+..|+..|-
T Consensus 14 KIq~avdtI~lLqmEieELKekN~~L~~e----~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLg 76 (81)
T 2jee_A 14 KVQQAIDTITLLQMEIEELKEKNNSLSQE----VQNAQHQREELERENNHLKEQQNGWQERLQALLG 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444344444555554444455555443 44567778888888888876554 3445555543
No 252
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=21.29 E-value=3.3e+02 Score=23.12 Aligned_cols=13 Identities=23% Similarity=0.618 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHH
Q 002837 632 RLQEQLQAERDLR 644 (875)
Q Consensus 632 ~Lq~qL~~E~~l~ 644 (875)
.|.++|+.|+-|.
T Consensus 43 ~lek~L~~E~~LK 55 (71)
T 1s1c_X 43 AFEKNINTERTLK 55 (71)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6777777776554
No 253
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=21.24 E-value=2.4e+02 Score=28.29 Aligned_cols=16 Identities=25% Similarity=0.194 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 002837 623 RLALEQDVSRLQEQLQ 638 (875)
Q Consensus 623 r~~LeqeV~~Lq~qL~ 638 (875)
-..|.+|+..|-.||+
T Consensus 22 V~~L~~En~~L~~ql~ 37 (190)
T 4emc_A 22 VANLVNENFVLSEKLD 37 (190)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344555555555544
No 254
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=21.21 E-value=1.9e+02 Score=25.37 Aligned_cols=28 Identities=21% Similarity=0.349 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 669 RAELEEIALAEADVARLKQKVAELHHQL 696 (875)
Q Consensus 669 ~~ll~eia~~E~~v~~Le~~v~~l~~~l 696 (875)
..|-.+|..++++|+.|++....|+--.
T Consensus 41 ~~Lh~~ie~~~eEi~~Lk~en~~L~elA 68 (83)
T 1wlq_A 41 EKLHKEIEQKDSEIARLRKENKDLAEVA 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666677777777777777666433
No 255
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=21.09 E-value=1.6e+02 Score=25.21 Aligned_cols=34 Identities=24% Similarity=0.258 Sum_probs=26.2
Q ss_pred HHHHHhHhhhhhHHHHHHHHHHhhhhhhhhhhHH
Q 002837 580 EELAIQRLEITKNDLRHRIAKEARGNAILQASLE 613 (875)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~q~~~~ 613 (875)
=|.-|+|||.+=.-||.|.|+=.-+...-|..|.
T Consensus 5 lEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLK 38 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARILAEYESMQQKLK 38 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667999999999999999876666655555544
No 256
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=21.08 E-value=1.3e+02 Score=22.99 Aligned_cols=27 Identities=33% Similarity=0.516 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 610 ASLERRKQALHERRLALEQDVSRLQEQ 636 (875)
Q Consensus 610 ~~~~~rk~~~~~~r~~LeqeV~~Lq~q 636 (875)
..||.|-+.++.+-.+||+-|.-||..
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~E 32 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNE 32 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457888888888888899998888754
No 257
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=20.66 E-value=5.2e+02 Score=28.27 Aligned_cols=31 Identities=23% Similarity=0.256 Sum_probs=27.8
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 662 RGMDSKTRAELEEIALAEADVARLKQKVAELHHQ 695 (875)
Q Consensus 662 ~~lp~~~~~ll~eia~~E~~v~~Le~~v~~l~~~ 695 (875)
..+++.++++|.+|.. .+++|||-+.+|++.
T Consensus 316 ~~~dp~~~~i~~~i~~---~l~~~e~~~~~l~~~ 346 (365)
T 3fse_A 316 MYTDPIATAIFKEIYK---DLVKYEQRLVSLYRT 346 (365)
T ss_dssp TCSCHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHH---HHHHHHHHHHHHHHh
Confidence 6789999999999977 999999999988764
No 258
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=20.14 E-value=1.8e+02 Score=23.87 Aligned_cols=43 Identities=19% Similarity=0.186 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 002837 617 QALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVA 690 (875)
Q Consensus 617 ~~~~~~r~~LeqeV~~Lq~qL~~E~~l~~~Le~al~~~~~~~~~~~~lp~~~~~ll~eia~~E~~v~~Le~~v~ 690 (875)
+.-.++-..|+++|..|+.+= .+|-.+|+.|+.||.+|.+-+.
T Consensus 19 ~KKk~~~~~le~~~~~L~~~N-------------------------------~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 19 QKKRAEQEALTGECKELEKKN-------------------------------EALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHHHHHh
Confidence 334556677888888888642 3666677777777777766554
Done!