Query 002839
Match_columns 874
No_of_seqs 270 out of 682
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 11:50:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002839.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002839hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02337 lipoxygenase 100.0 6E-265 1E-269 2289.6 75.4 857 1-874 1-866 (866)
2 PLN02305 lipoxygenase 100.0 9E-264 2E-268 2270.2 75.1 828 33-874 82-918 (918)
3 PLN02264 lipoxygenase 100.0 6E-262 1E-266 2255.3 72.9 833 27-874 79-919 (919)
4 PF00305 Lipoxygenase: Lipoxyg 100.0 9E-204 2E-208 1772.4 35.1 662 187-858 1-667 (667)
5 cd01751 PLAT_LH2 PLAT/ LH2 dom 100.0 8.7E-39 1.9E-43 309.8 14.8 136 34-178 2-137 (137)
6 smart00308 LH2 Lipoxygenase ho 99.1 4.4E-10 9.5E-15 104.3 10.6 85 67-166 20-105 (105)
7 PF01477 PLAT: PLAT/LH2 domain 98.8 5.8E-09 1.3E-13 97.2 7.3 67 108-176 44-113 (113)
8 cd00113 PLAT PLAT (Polycystin- 98.5 2.9E-07 6.3E-12 86.8 8.6 65 110-176 49-116 (116)
9 cd02899 PLAT_SR Scavenger rece 98.2 3.2E-06 6.9E-11 80.1 6.6 55 108-166 44-99 (109)
10 cd01753 PLAT_LOX PLAT domain o 97.9 3E-05 6.6E-10 73.8 6.8 58 108-168 47-107 (113)
11 cd01756 PLAT_repeat PLAT/LH2 d 97.7 0.00014 3.1E-09 69.7 8.8 66 108-176 49-118 (120)
12 cd01757 PLAT_RAB6IP1 PLAT/LH2 97.7 0.00014 3.1E-09 69.5 7.9 49 120-168 49-100 (114)
13 cd01752 PLAT_polycystin PLAT/L 97.5 0.00039 8.4E-09 66.8 8.4 64 110-175 50-117 (120)
14 cd01754 PLAT_plant_stress PLAT 97.5 0.00029 6.2E-09 68.9 7.0 59 108-168 55-119 (129)
15 cd01755 PLAT_lipase PLAT/ LH2 33.3 1.5E+02 0.0032 28.7 7.0 49 110-161 47-105 (120)
16 KOG2080 Uncharacterized conser 28.3 26 0.00055 43.9 1.0 48 121-168 1020-1070(1295)
17 PF10474 DUF2451: Protein of u 26.9 45 0.00097 36.1 2.4 24 658-687 178-201 (234)
18 PF10281 Ish1: Putative stress 24.8 1.1E+02 0.0024 23.6 3.7 31 677-716 5-35 (38)
19 PF06232 ATS3: Embryo-specific 24.5 4.1E+02 0.0089 26.4 8.3 53 110-166 65-117 (125)
No 1
>PLN02337 lipoxygenase
Probab=100.00 E-value=5.7e-265 Score=2289.60 Aligned_cols=857 Identities=78% Similarity=1.300 Sum_probs=824.3
Q ss_pred CcccchhhhhccCCCCCCCCCCcccccccCceeeeeEEEEEEeeccccccccccchhhhHhhhcCCeEEEEEeecccCCC
Q 002839 1 MLGHIIDAITCCGDDRDDNNGNKKMKCEKGKCKKIKGTVVLMKKNVLDFNDFNASFLDRFHELLGRKVTLQLISAVHGEP 80 (874)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~v~l~lvS~~~~~~ 80 (874)
|++++++.++ |.+. .++ ..+|||+||+|+|+++|++++.++++|.++|++||+|+|||||++++||
T Consensus 1 ~~~~~~~~~~--~~~~----~~~--------~~~~~~~v~l~~k~~ld~~~~~~~~lD~~~~l~G~~v~lqLvS~~~~~p 66 (866)
T PLN02337 1 MLGGIIDAIT--GSNN----KTK--------KEKIKGTVVLMKKNVLDFNDFNASVLDRVHELLGKGVSLQLISSTVVDP 66 (866)
T ss_pred CcccccHhhh--cCCc----cCc--------cceEEEEEEEEEecccchhhcccchhhhHHHhcCCeEEEEEEecccccc
Confidence 7788888877 5321 111 1489999999999999999999999999999999999999999999887
Q ss_pred CcCCCcCcccCcccccccccccCCCCCCCceEEEEEeecCCCCCCceeEEeecCCCCceeEeEEEEeecCCCceEEEeec
Q 002839 81 AENGLQAGKIGKLAHIEGWIPKCTPLAAGESAFNVTFEWDEDIGVPGAFLIRNNHHSEFYLKTLTLEDVPGEGRVHFVCN 160 (874)
Q Consensus 81 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~v~f~~~~~~G~pgai~v~n~~~~e~fl~~i~l~~~p~~~~~~F~c~ 160 (874)
+||+ +||+|++++|++|+++.+...+++++|+|+|+||++||+||||+|+|.|++||||++|+|+++|++++|||+||
T Consensus 67 -~~g~-~gk~~k~a~l~~w~~~~~~~~~~~~~y~~~F~~~~~fG~pGAi~V~N~h~~EffL~sitle~~p~~g~v~f~cn 144 (866)
T PLN02337 67 -ENGL-RGKLGKEAYLEKWITTITSLTAGESAFKVTFDWDEKIGVPGAFIIKNNHHSEFYLKTVTLEDVPGHGRVHFVCN 144 (866)
T ss_pred -ccCC-ccccCCccchhhhccCCCCCCCCceEEEEEEEecccCCCcceEEEEecCCceEEEEEEEEecCCCCCcEEEecC
Confidence 5886 99999999999999876666778889999999999999999999999999999999999999998899999999
Q ss_pred ccccCCCCCCcceeeecCceeccCCCCchhhHhHHHHHHHhhCCCcccccccCceeecccccCCCCCCCCCCcccccCCC
Q 002839 161 SWVYPAKDYNTDRIFFTNKTYLPTQTPGPLRYYREQELVNLRGDVTTELQEHDRVYDYAYYNDLGDPKKGKKFERPVLGG 240 (874)
Q Consensus 161 sWv~~~~~~~~~r~ff~n~~yLp~~tp~~l~~~R~~EL~~lrg~g~g~rk~~driYdy~~yndlG~Pd~~~~~~rpvlgg 240 (874)
|||||+++++.+||||+||+|||++||++|+++||+||++|||||+||||+||||||||+|||||+||++++++||||||
T Consensus 145 SWV~~~~~~~~~RiFF~nk~ylp~~tP~~l~~~R~~eL~~lrG~g~gerk~~dRiYdyd~YnDlg~pd~~~~~~RpvLGg 224 (866)
T PLN02337 145 SWIYPAKRYRYDRVFFSNKTYLPSQTPAPLRPYREEELVNLRGDGKGELKEWDRVYDYDYYNDLGDPDKGNPYARPVLGG 224 (866)
T ss_pred CccccCCCCCCCceEecCCCcCcccccHHHHHHHHHHHHHhcCCCCCCCCcccchhhhhhhccCCCCCCCccccCccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccCCCCCC-CCCCCchhhhccccCccccCCCCccCcccccchHHHHHHHHHHhhhhhhhcc-CCCCCCCCC
Q 002839 241 SADYPYPRRGRTGRKLA-EDSKSESRLSIVYSLNIYVPRDERFGHLKMSDFLAFALKSIAQVIKPALESL-DSSPNEFDS 318 (874)
Q Consensus 241 s~~~pyprr~rtgr~~~-~d~~~e~r~~~~~~~~~yvPrDe~F~~~K~~~f~~~~~~~~~~~~~p~l~~~-~~~~~~f~s 318 (874)
|++|||||||||||||+ +||.+|||.+.. +..+||||||+|++.|+++|+++++||++|.++|.|+++ +.+..+|++
T Consensus 225 ~~~~pyPRR~rTgr~~t~~dp~~esr~~~~-~~~~yvPrDE~f~~~k~~~f~~~~l~~~~~~~~p~~~~~~~~~~~~f~~ 303 (866)
T PLN02337 225 SQEYPYPRRGRTGRKPTKTDPNSESRLPLL-SLNIYVPRDERFGHLKMSDFLAYALKAIAQVLVPELEALFDKTPNEFDS 303 (866)
T ss_pred CCCCCCCCcccCCCCCCCCCCccccccccC-CCCcccCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 99999999999999999 999999997543 235899999999999999999999999999999999987 666899999
Q ss_pred HHHHHHhhcCCCCCCCC-chhhhhcccchhhHHHhhhcCCC-cccCCCchhhhhcccccCCcHHHHHHHhhCCCcccccc
Q 002839 319 FDDILKLYEGGIDLPNN-LLDDIRKHIPFEMLKEIFRTDGD-LLKFPMPQVIKEDESAWRTDEEFTREMLAGLNPVVICC 396 (874)
Q Consensus 319 f~di~~ly~~~~~~p~~-~~~~~~~~~p~~~~~~~~~~~~~-~~k~p~P~v~~~~~~~W~~DeeFarQ~LaG~NP~~I~r 396 (874)
|+||++||++|+++|.+ ..+.+++.+|++++|++++++++ ++|||+|+||++|+++|++|+|||||||||+||++|+|
T Consensus 304 f~~i~~ly~~g~~lp~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~fp~P~vi~~d~~~W~~DeeFarQ~LaG~NP~~I~r 383 (866)
T PLN02337 304 FEDVLKLYEGGIKLPNGPLLEELRKNIPLEMLKELLRTDGEYLLKFPMPQVIKEDKSAWRTDEEFAREMLAGVNPVVIRR 383 (866)
T ss_pred HHHHHHHhhcCCCCCCchHHHHhhhcChHHHHHHHHhhcccccccCCCCceeecccccccCHHHHHHHHhcCCCChheee
Confidence 99999999999999975 45678888999999999998888 99999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCccccCCCCcccchhhHhhcCCCCCHHHHHhcCCEEEecccchhhhhhhcccCCCCccccceeEEeecCC
Q 002839 397 LKEFPPTSKLNPELYGNQRSTITQNDIENNLDGLTVDEAIEKNKLFILDHHDSLMTYLRRINTTSTKTYASRTILFLKAD 476 (874)
Q Consensus 397 ~~~~P~~s~ld~~~yg~~~s~it~e~i~~~l~G~tl~~al~~grLFi~Dy~d~~lp~l~~in~~~~~~yA~~~Lffl~~d 476 (874)
|++||++|+|||++||+++|+||++||++.|+|+||+|||++|||||+||||.+|||+.++|...+++|||+||||++++
T Consensus 384 l~~~P~~~~ld~~~yg~~~s~iT~e~v~~~L~g~Tl~eAl~~~rLfi~Dy~d~~lp~l~~in~~~~k~yA~~tLffl~~d 463 (866)
T PLN02337 384 LTEFPPKSKLDPKKYGDQNSSITEEHIEKNLEGLTVQEALEKNRLFILDHHDALMPYLRRINSTSTKTYATRTLLFLKDD 463 (866)
T ss_pred cccCCCcccCChhhcCCccCccCHHHHHhccCCccHHHHHHcCCEEEEecchhcCcccccccCCCCccccceeEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999888889999999999999
Q ss_pred CceeeEEEEecCCCCCCCCCCCCCeeecCCCCCCCCchhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhHHHHHHhccCCC
Q 002839 477 GTLKPVAIELSLPHPDGDQYGAVSKVYTPSEDGVKGSIWQLAKAYVAVNDSGHHQLISHWLNTHAAIEPFVIATNRQLSV 556 (874)
Q Consensus 477 g~L~PIAIqL~~~~~~~~~~~~~~~VftP~d~~~~~~~W~LAK~~v~~aD~~~HqlisHllrTHlv~Epf~IAt~RqLs~ 556 (874)
|+|+||||||++|++.++++++.++||||+++++++|.|+|||+||++||+++||+|+||++||+++|||+|||+||||+
T Consensus 464 G~L~PlAIqL~~p~~~~~~~g~~~~VfTP~~~~~~~~~W~lAK~~v~~aD~~~HqlisHllrTHlv~EpfiIAt~RqLs~ 543 (866)
T PLN02337 464 GTLKPLAIELSLPHPQGDKFGAVSKVYTPAEDGVEGSVWQLAKAYVAVNDSGYHQLISHWLNTHAVIEPFVIATNRQLSV 543 (866)
T ss_pred CCEeEEEEEeccCCCCcccCCCCCCeECCCCCCCCcchHHHHHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHHHhccCCC
Confidence 99999999999998877777889999999987777999999999999999999999999999999999999999999999
Q ss_pred cCchhhcccccccchhchhHHHHHhcccCCceeeeeecChhhHHHHHHHHHcCCCCCCCCCchhHHhcCCCCCCCCCCcc
Q 002839 557 LHPIYKLLHPHFRDTMNINAFARQILINAGGVLEITVFPGKYAMELSSALYKSWSFPEQALPEDLKKRGVAVEDPNSPHG 636 (874)
Q Consensus 557 ~HPI~kLL~PHfr~Tl~IN~~AR~~LI~~gG~id~~~~~g~~~~elss~~yk~w~f~~~~lP~DL~~RG~~~~D~~~~~g 636 (874)
+|||||||.||||+||+||++||+.||++||++|+++++|+++|||++++|++|+|++++||+||++|||+++|+++|||
T Consensus 544 ~HPI~kLL~PHfr~Tl~IN~~AR~~LI~~gGiid~~~~~g~~~~els~~~yk~w~F~~~~LP~DL~~RGv~~~D~~~p~g 623 (866)
T PLN02337 544 LHPIHKLLHPHFRDTMNINALARQILINAGGILESTVFPGKYALEMSSVVYKNWNFTEQALPADLIKRGVAVEDPSSPHG 623 (866)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHheeCCCCeeeeeeccchhHHHHHHHHHhcCCcccccCHHHHHHcCCCccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCccchhhHHHHHHHHHHHHHhchhhcCCCccccCChHHHHHHHHHHhccCCCCCCCCCCCCCCChHHHHHHHh
Q 002839 637 LRLLIEDYPYAVDGLEIWASIKKWVQDYCYFYYKNDDMVKEDSELQSWWKELREEGHGDKKDEPWWPKMQNREELIDSCT 716 (874)
Q Consensus 637 l~l~l~dYpYrdDgL~IW~AI~~fV~~yv~~YY~~D~~V~~D~ELQaW~~Ei~~~G~gd~kd~~~~P~l~T~~eLv~~lT 716 (874)
+++.|||||||+|||+||+||++||++||++||++|++|++|.|||+||+||+++|||++++++|||+|+|+++||++||
T Consensus 624 ~~l~i~dYPYrdDGL~iW~AI~~~V~~yv~~YY~~D~~V~~D~ELQaW~~Ei~~~G~gd~k~~~~~p~l~T~~eLv~~lT 703 (866)
T PLN02337 624 VRLLIEDYPYAVDGLEIWSAIETWVKEYCAFYYPTDDMVQGDTELQSWWKEVREEGHGDLKDEPWWPKMQTVAELIESCT 703 (866)
T ss_pred cccccCCCcchhhHHHHHHHHHHHHHHHHHhhCCchHhhccCHHHHHHHHHHHhcCCCCccCCCCCCccCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccchhhhhccCCcccccccCCCcccccCCCCCCCCchhhhcccCchHHHHhhcCcHHHHHHHHHHHHHhccCCCC
Q 002839 717 IIIWVASALHAAINFGQYPYAGYLPNRPTISRRFMPEEGTPEYDELESNPDKVFLKTITAQLQTILGISLIEILSRHSTD 796 (874)
Q Consensus 717 ~iIf~aSaqHAAVNfgQy~y~gf~PN~P~~~r~p~P~~g~~~~~~l~~~pe~~~L~~LP~~~qa~~~m~~~~lLS~h~~d 796 (874)
+|||+|||||||||||||+|+||+||+|++||+|||++++++|.+|..+||+++|++||++.||+.+|+++++||+|++|
T Consensus 704 ~iIf~aSaqHAAVNfgQy~y~gfvPN~P~~~r~~~P~~~~~e~~~l~~~~e~~~L~tlp~~~qt~~~~~l~~lLS~~s~d 783 (866)
T PLN02337 704 IIIWIASALHAAVNFGQYPYAGYLPNRPTVSRRFMPEPGTPEYEELEKNPDKAFLKTITAQLQTLLGISLIEILSRHSSD 783 (866)
T ss_pred hhhhhcchhhhhhhcCCcccccccCCCchhhcCCCCCCCchhhhhhccCcHHHHHHhCCCHHHHHHHHHHHHHhccCCCC
Confidence 99999999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred ccccCCcCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCCccccCCCCcCcccccccCC-----CCCCCcCccCcc
Q 002839 797 EVYLGQRDTPEWTSDEAPLQAFDEFGKKLAEVEEKIISRNHNKNLKNRVGPVKMPYTLLVPTS-----EGGLTGKGIPNS 871 (874)
Q Consensus 797 e~yLG~~~~~~~~~d~~~~~a~~~F~~~L~~ie~~I~~RN~~~~lknr~g~~~~PY~~L~Pss-----~~g~t~~~IPnS 871 (874)
|+|||+|++..|+.|+++++|+++|+++|++||++|++||++++||||+||+++||+||+|++ ++||||||||||
T Consensus 784 e~yLG~~~~~~w~~d~~~~~a~~~F~~~L~eIe~~I~~RN~~~~~knr~G~~~~PY~lL~P~~~~~~~~~g~t~~gIPNS 863 (866)
T PLN02337 784 EVYLGQRDTPEWTSDAEPLEAFKRFGERLVEIENRIVDMNKDPRLKNRVGPVKMPYTLLYPNTSDYTGEGGLTGKGIPNS 863 (866)
T ss_pred ceeccCcCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcccCCCCCCceeeCCCCccccCCCCcccCCCCCc
Confidence 999999988899999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred ccC
Q 002839 872 VSI 874 (874)
Q Consensus 872 IsI 874 (874)
|||
T Consensus 864 ISI 866 (866)
T PLN02337 864 VSI 866 (866)
T ss_pred ccC
Confidence 998
No 2
>PLN02305 lipoxygenase
Probab=100.00 E-value=9.2e-264 Score=2270.18 Aligned_cols=828 Identities=46% Similarity=0.823 Sum_probs=793.3
Q ss_pred eeeeEEEEEEeeccccccccccchhhhHhhhcCCeEEEEEeecccCCCCcCCCcCcccCcccccccccccCCCCCCCceE
Q 002839 33 KKIKGTVVLMKKNVLDFNDFNASFLDRFHELLGRKVTLQLISAVHGEPAENGLQAGKIGKLAHIEGWIPKCTPLAAGESA 112 (874)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~v~l~lvS~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (874)
.+|||+||+|+|+++|++++.++++|+++|++||+|+|||||++++|. || +||++ +++|++|+++ +...++++.
T Consensus 82 ~~i~~~v~~~~~~~~~~~~~~~~~~d~~~~~~g~~v~lqLvS~~~~~~--~g--~gk~~-~~~l~~~~~~-~~~~~~~~~ 155 (918)
T PLN02305 82 IDVRAVITIRKKIKEKITEKFEDQWEYFMNGIGQGILIQLVSEEIDPV--TG--SGKSV-ESSVRGWLPK-PSNDPHIVE 155 (918)
T ss_pred CeEEEEEEEEeecccchhhcccchhhHHHHhhCCeEEEEEEeccccCC--CC--Ccccc-cchhhccccC-CCCCCCceE
Confidence 589999999999999999999999999999999999999999998764 78 89999 9999999976 343367789
Q ss_pred EEEEeecCCCCCCceeEEeecCCCCceeEeEEEEeecCCCceEEEeecccccCCCCCCcceeeecCceeccCCCCchhhH
Q 002839 113 FNVTFEWDEDIGVPGAFLIRNNHHSEFYLKTLTLEDVPGEGRVHFVCNSWVYPAKDYNTDRIFFTNKTYLPTQTPGPLRY 192 (874)
Q Consensus 113 y~v~f~~~~~~G~pgai~v~n~~~~e~fl~~i~l~~~p~~~~~~F~c~sWv~~~~~~~~~r~ff~n~~yLp~~tp~~l~~ 192 (874)
|+|+|+|+++||+||||+|+|.|++||||++|+|+++|+ ++|||+||||||+.++++.+||||+||+|||++||++|++
T Consensus 156 ~~~~f~~~~~fG~pGA~~v~N~h~~ef~l~~i~l~~~p~-g~v~f~cnSWv~~~~~~~~~RiFF~nk~ylP~~tP~~l~~ 234 (918)
T PLN02305 156 YAADFTVPFDFGKPGAVLVTNLHGKEFYLMEIVIHGFDD-GPIFFPANTWIHSRKDNPESRIIFRNQAYLPSQTPPGIKD 234 (918)
T ss_pred EEEEEeeccccCCcceEEEEeCCCceEEEEEEEEecCCC-CeEEEeccCccccCCCCCCCceEecCCCcCcccCCHHHHH
Confidence 999999999999999999999999999999999999997 9999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhCCCcccccccCceeecccccCCCCCCCCCCcccccCCCCCCCCCCCcccCCCCCC-CCCCCchhhhcccc
Q 002839 193 YREQELVNLRGDVTTELQEHDRVYDYAYYNDLGDPKKGKKFERPVLGGSADYPYPRRGRTGRKLA-EDSKSESRLSIVYS 271 (874)
Q Consensus 193 ~R~~EL~~lrg~g~g~rk~~driYdy~~yndlG~Pd~~~~~~rpvlggs~~~pyprr~rtgr~~~-~d~~~e~r~~~~~~ 271 (874)
+||+||++|||||+||||+||||||||+|||||+||++++++|||||||+ |||||||||||||+ +||++|||.+..
T Consensus 235 ~Re~eL~~lRGdg~Gerk~~dRiYdYd~YNDLG~Pd~~~~~~RpvLGG~~-~PYPRR~RTGR~~t~~Dp~~Esr~~~~-- 311 (918)
T PLN02305 235 LRREDLLSLRGNGKGERKPHDRIYDYAPYNDLGNPDKDEDLARPVLGGEE-WPYPRRCRTGRPPTKKDPLCESRIEKP-- 311 (918)
T ss_pred HHHHHHHHhcCCCCCcCCccccccchhhhccCCCCCCCccccCcccCCCC-CCCCCcCcCCCCCCCCCCcccccccCC--
Confidence 99999999999999999999999999999999999999999999999988 99999999999999 999999996442
Q ss_pred CccccCCCCccCcccccchHHHHHHHHHHhhhhhhhcc-CCCCCCCCCHHHHHHhhcCCCCCCCCchhhhhcccch--hh
Q 002839 272 LNIYVPRDERFGHLKMSDFLAFALKSIAQVIKPALESL-DSSPNEFDSFDDILKLYEGGIDLPNNLLDDIRKHIPF--EM 348 (874)
Q Consensus 272 ~~~yvPrDe~F~~~K~~~f~~~~~~~~~~~~~p~l~~~-~~~~~~f~sf~di~~ly~~~~~~p~~~~~~~~~~~p~--~~ 348 (874)
..+||||||+|+++|+++|+++++|+++|.++|.|+++ +.+..+|+||+||++||++|+++|....+.+++ +|+ ++
T Consensus 312 ~~~YvPrDE~f~~~K~~~f~~~~lk~~~~~~~p~~~~~~~~~~~~F~~f~~i~~Ly~~g~~l~~~~~~~~~~-~p~~~~~ 390 (918)
T PLN02305 312 HPVYVPRDETFEEIKRNTFSAGRLKALLHNLIPSIAAALSSSDIPFTCFSDIDKLYNDGILLKTEEPKDIGL-NPFLGNF 390 (918)
T ss_pred CCcCCCCCCCcccchhhhHHHHHHHHHHHhhhhHHHHhcCCCCCCCCCHHHHHHHhccCCcCCchhhhhhhc-CCchHHH
Confidence 34899999999999999999999999999999999987 667899999999999999999999742244544 888 89
Q ss_pred HHHhhhcCCC-cccCCCchhhhhcccccCCcHHHHHHHhhCCCcccccccccCCCCCCCCccccCCCCcccchhhHhhcC
Q 002839 349 LKEIFRTDGD-LLKFPMPQVIKEDESAWRTDEEFTREMLAGLNPVVICCLKEFPPTSKLNPELYGNQRSTITQNDIENNL 427 (874)
Q Consensus 349 ~~~~~~~~~~-~~k~p~P~v~~~~~~~W~~DeeFarQ~LaG~NP~~I~r~~~~P~~s~ld~~~yg~~~s~it~e~i~~~l 427 (874)
+|++ +++++ +||||+|+||++|+++|++|+|||||+|||+||++|+||++||++|+|||++||+++|+||++||+..|
T Consensus 391 ~~~i-~~~~~~~lkf~~P~vi~~d~~~W~~DeeFaRQ~LaGvNP~~I~rl~efP~~skldp~~yG~~~s~iT~e~ve~~L 469 (918)
T PLN02305 391 MKQV-LSVSERLLKYDIPAVIKRDRFAWLRDNEFARQALAGVNPVNIEILKEFPILSKLDPAVYGPPESALTEELIEREL 469 (918)
T ss_pred HHHh-hhcccccccCCCcceeecccccccChHHHHHHHHcCCCChheeeccccCCccccCccccCCcCCCcCHHHHHhhc
Confidence 9999 67777 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHhcCCEEEecccchhhhhhhcccCCCC-ccccceeEEeecCCCceeeEEEEecCCCCCCCCCCCCCeeecCC
Q 002839 428 DGLTVDEAIEKNKLFILDHHDSLMTYLRRINTTST-KTYASRTILFLKADGTLKPVAIELSLPHPDGDQYGAVSKVYTPS 506 (874)
Q Consensus 428 ~G~tl~~al~~grLFi~Dy~d~~lp~l~~in~~~~-~~yA~~~Lffl~~dg~L~PIAIqL~~~~~~~~~~~~~~~VftP~ 506 (874)
+|+||+|||++|||||+||||++|||+.++|...+ +.|||+||||++++|+|+||||||++++..++ ...++||||.
T Consensus 470 ~G~TleeAl~~~rLFIlDy~dl~lp~l~~in~l~~~~~YAprtLffL~~dG~L~PlAIqL~~~p~~~~--p~~~~VftP~ 547 (918)
T PLN02305 470 EGMTVEKAIEEKRLFILDYHDMLLPFIEKMNSLPERKAYASRTVFFYSKAGALRPIAIELSLPPTPSS--PGNKFVYTHG 547 (918)
T ss_pred CCCcHHHHHHcCCEEEEechhhhCcccccccccCCcccccceeEEEECCCCCEeeEEEEeeCCCCCCC--CCcceeeCCC
Confidence 99999999999999999999999999999998554 59999999999999999999999999865432 3567899998
Q ss_pred CCCCCCchhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhHHHHHHhccCCCcCchhhcccccccchhchhHHHHHhcccCC
Q 002839 507 EDGVKGSIWQLAKAYVAVNDSGHHQLISHWLNTHAAIEPFVIATNRQLSVLHPIYKLLHPHFRDTMNINAFARQILINAG 586 (874)
Q Consensus 507 d~~~~~~~W~LAK~~v~~aD~~~HqlisHllrTHlv~Epf~IAt~RqLs~~HPI~kLL~PHfr~Tl~IN~~AR~~LI~~g 586 (874)
+++++.|.|+||||||++||+++||+|+||++||++|||||||||||||.+|||||||.||||+||+||++||++|||+|
T Consensus 548 ~d~~~~w~W~LAK~~V~~aD~~~HQlisHlLrTHlv~EpfiIAT~RqLs~~HPI~kLL~PHfr~TL~INalAR~~LIn~g 627 (918)
T PLN02305 548 HDATTHWIWKLAKAHVCSNDAGVHQLVNHWLRTHACMEPYIIATHRQLSAMHPIYKLLHPHMRYTLEINALARQSLINGG 627 (918)
T ss_pred CCCCCchHHHHHHHHHHhccHHHHHHHHHHhhHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 77778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeecChhhHHHHHHHHHcC-CCCCCCCCchhHHhcCCCCCCCCCCcccccCCCCCccchhhHHHHHHHHHHHHHhc
Q 002839 587 GVLEITVFPGKYAMELSSALYKS-WSFPEQALPEDLKKRGVAVEDPNSPHGLRLLIEDYPYAVDGLEIWASIKKWVQDYC 665 (874)
Q Consensus 587 G~id~~~~~g~~~~elss~~yk~-w~f~~~~lP~DL~~RG~~~~D~~~~~gl~l~l~dYpYrdDgL~IW~AI~~fV~~yv 665 (874)
|++|++|++|+++|||++++|++ |+|++++||+||++|||+++|+++|||++|.|||||||+|||+||+||++||++||
T Consensus 628 Giie~~fspg~~~~elss~aYk~~w~Fd~~~LP~DL~kRGva~~D~~~p~gl~l~ipdYPYrdDGL~IW~AIk~wV~~yV 707 (918)
T PLN02305 628 GIIEACFSPGKYAMELSSAAYKSMWRFDMEALPADLIRRGMAEEDPSMPCGVRLVIEDYPYAADGLLIWSAIKEWVESYV 707 (918)
T ss_pred CceeeeeccchhHHHHHHHHHHhcCcCccccCHHHHHHcCCCccCCCCcccccccCCCCchhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCccccCChHHHHHHHHHHhccCCCCCCCCCCCCCCChHHHHHHHhhhhhhccchhhhhccCCcccccccCCCcc
Q 002839 666 YFYYKNDDMVKEDSELQSWWKELREEGHGDKKDEPWWPKMQNREELIDSCTIIIWVASALHAAINFGQYPYAGYLPNRPT 745 (874)
Q Consensus 666 ~~YY~~D~~V~~D~ELQaW~~Ei~~~G~gd~kd~~~~P~l~T~~eLv~~lT~iIf~aSaqHAAVNfgQy~y~gf~PN~P~ 745 (874)
++||++|++|++|.|||+||+||+++||+|+++.+|||+|+|+++||++||+|||+|||||||||||||+|+||+||+|+
T Consensus 708 ~~YY~~D~~V~~D~ELQaW~~Ei~~~Gh~d~kd~~~~p~l~T~~eLi~~lT~IIwtaSaqHAAVNFgQydy~gfvPN~P~ 787 (918)
T PLN02305 708 DHFYSEPNSITSDLELQAWWDEIKNKGHYDKRNEPWWPKLNTKEDLSGILTTMIWIASGQHAAINFGQYPFGGYVPNRPT 787 (918)
T ss_pred HhhCCChhhhccCHHHHHHHHHHHhcCCCCCCCCCCCcCCcCHHHHHHHHHhhhhhcchhhhhhhcCCcccccccCCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCchhhhcccCchHHHHhhcCcHHHHHHHHHHHHHhccCCCCccccCCcCCC--CCCCChHHHHHHHHHHH
Q 002839 746 ISRRFMPEEGTPEYDELESNPDKVFLKTITAQLQTILGISLIEILSRHSTDEVYLGQRDTP--EWTSDEAPLQAFDEFGK 823 (874)
Q Consensus 746 ~~r~p~P~~g~~~~~~l~~~pe~~~L~~LP~~~qa~~~m~~~~lLS~h~~de~yLG~~~~~--~~~~d~~~~~a~~~F~~ 823 (874)
+||+|||++++++|.+|..+||+++|++||++.||+.+|+++++||+|++||+|||++.+. .|+.|+++++|+++|++
T Consensus 788 ~~Rrp~P~~~~~~~~~l~~~pe~~~L~tLP~~~qa~~~mav~~iLS~hs~de~yLG~~~~~~~~w~~D~~~~~A~~rF~~ 867 (918)
T PLN02305 788 LMRKLIPQENDPDYEKFIRNPQYTFLSSLPTQLQATKVMAVQDTLSTHSPDEEYLGELRHLHSHWINDHEVVKLFNKFSA 867 (918)
T ss_pred hhcCCCCCCCCchHHHhhhChHHHHHHHCCcHHHHHHHHHHHHHhccCCCCcccccCCCCcccccccCHHHHHHHHHHHH
Confidence 9999999888889999999999999999999999999999999999999999999999765 79999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCccccCCCCcCcccccccCCCCCCCcCccCccccC
Q 002839 824 KLAEVEEKIISRNHNKNLKNRVGPVKMPYTLLVPTSEGGLTGKGIPNSVSI 874 (874)
Q Consensus 824 ~L~~ie~~I~~RN~~~~lknr~g~~~~PY~~L~Pss~~g~t~~~IPnSIsI 874 (874)
+|++||++|++||++++||||+||+++||+||+|+|++|||||||||||||
T Consensus 868 ~L~eIE~~I~~RN~~~~lkNR~G~~~~PY~lL~P~s~~G~T~rgIPNSISI 918 (918)
T PLN02305 868 RLEEIEKTINERNKDIRLKNRNGAGIPPYELLLPTSGPGVTGRGIPNSISI 918 (918)
T ss_pred HHHHHHHHHHHHhCCccccccCCCCCCCccccCCCCCCCCCcCCCCCcccC
Confidence 999999999999999999999999999999999999999999999999998
No 3
>PLN02264 lipoxygenase
Probab=100.00 E-value=5.6e-262 Score=2255.32 Aligned_cols=833 Identities=45% Similarity=0.817 Sum_probs=796.4
Q ss_pred cccCceeeeeEEEEEEeeccccccccccchhhhHhhhcCCeEEEEEeecccCCCCcCCCcCcccCcccccccccccCCCC
Q 002839 27 CEKGKCKKIKGTVVLMKKNVLDFNDFNASFLDRFHELLGRKVTLQLISAVHGEPAENGLQAGKIGKLAHIEGWIPKCTPL 106 (874)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~v~l~lvS~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 106 (874)
-|+.+..+|||+||+|+|+++|++++.++++|+++|++||+|+|||||++++|. || +||+|++++|++|+++ +..
T Consensus 79 ~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~D~~~~~~G~~v~lqLVSs~~~~~--tg--~~~~~~~a~l~~~~~~-~~~ 153 (919)
T PLN02264 79 EEKAVKFKVRAVVTVRNKNKEDLKETLVKHLDAFTDKIGRNVVLELISTQVDPK--TK--EPKKSKAAVLKDWSKK-SNI 153 (919)
T ss_pred cccceEEEEEEEEEEEeccccchhhcccchhhHHHHHhCCeEEEEEEeccccCC--CC--CccCCCcchhcccccC-CCC
Confidence 456777899999999999999999999999999999999999999999998764 77 8999999999999976 455
Q ss_pred CCCceEEEEEeecCCCCCCceeEEeecCCCCceeEeEEEEeecCCCceEEEeecccccCCCCCCcceeeecCceeccCCC
Q 002839 107 AAGESAFNVTFEWDEDIGVPGAFLIRNNHHSEFYLKTLTLEDVPGEGRVHFVCNSWVYPAKDYNTDRIFFTNKTYLPTQT 186 (874)
Q Consensus 107 ~~~~~~y~v~f~~~~~~G~pgai~v~n~~~~e~fl~~i~l~~~p~~~~~~F~c~sWv~~~~~~~~~r~ff~n~~yLp~~t 186 (874)
.+++++|+|+|+||++||+||||+|+|.|++||||++|+|+++|+ |+|||+|||||||+++++.+||||+||+|||++|
T Consensus 154 ~~~~~~y~~~F~~~~~fG~pGAi~V~N~h~~EffL~~itle~~p~-g~v~F~cnSWV~p~~~~~~~RiFF~Nk~YLP~~t 232 (919)
T PLN02264 154 KAERVHYTAEFTVDSAFGSPGAITVTNKHQKEFFLESITIEGFAC-GPVHFPCNSWVQSQKDHPGKRIFFTNQPYLPSET 232 (919)
T ss_pred CCCceEEEEEEEeccccCCcceEEEEeCCCceEEEEEEEeccCCC-CcEEEecCCccccCcCCCCCceEecCCCcCcccC
Confidence 677889999999999999999999999999999999999999997 9999999999999999999999999999999999
Q ss_pred CchhhHhHHHHHHHhhCCCcccccccCceeecccccCCCCCCCCCCcccccCCCCCCCCCCCcccCCCCCC-CCCCCchh
Q 002839 187 PGPLRYYREQELVNLRGDVTTELQEHDRVYDYAYYNDLGDPKKGKKFERPVLGGSADYPYPRRGRTGRKLA-EDSKSESR 265 (874)
Q Consensus 187 p~~l~~~R~~EL~~lrg~g~g~rk~~driYdy~~yndlG~Pd~~~~~~rpvlggs~~~pyprr~rtgr~~~-~d~~~e~r 265 (874)
|++|+++||+||++|||||+||||+||||||||+|||||+||++++++|||||||+ |||||||||||||+ +||.+|||
T Consensus 233 P~~l~~~Re~eL~~lRGdg~Gerk~~dRiYdYd~YNDLG~Pd~~~~~~RpvLGG~~-~PYPRR~RTGR~~t~~dp~~Esr 311 (919)
T PLN02264 233 PAGLRALREKELRNLRGDGKGVRKLSDRIYDFDVYNDLGNPDKSRELARPTLGGKK-IPYPRRCRTGRLPTDSDMMAESR 311 (919)
T ss_pred CHHHHHHHHHHHHHhcCCCCCcCCcccchhhhhhhccCCCCCCCccccCcccCCCC-CCCCCCCcCCCCCCCCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999987 99999999999999 99999999
Q ss_pred hhccccCccccCCCCccCcccccchHHHHHHHHHHhhhhhhhcc-CCCCCCCCCHHHHHHhhcCCCCCCCCchh-hhhcc
Q 002839 266 LSIVYSLNIYVPRDERFGHLKMSDFLAFALKSIAQVIKPALESL-DSSPNEFDSFDDILKLYEGGIDLPNNLLD-DIRKH 343 (874)
Q Consensus 266 ~~~~~~~~~yvPrDe~F~~~K~~~f~~~~~~~~~~~~~p~l~~~-~~~~~~f~sf~di~~ly~~~~~~p~~~~~-~~~~~ 343 (874)
.+.. ..+||||||+|++.|+++|+++++|+++|.++|.++++ +.+ +|+||+||++||++|+.+|....+ .+++
T Consensus 312 ~~~~--~~iYvPrDE~f~~~K~~~f~~~~lk~~~~~~~p~~~~~~~~~--~F~~f~~i~~Ly~~g~~l~~~~~~~~~~~- 386 (919)
T PLN02264 312 VEKP--LPMYVPRDEQFEESKQDTFAAGRLKAVLHNLIPSLKASILAE--DFANFGEIDSLYKEGLLLKLGFQDDIFKK- 386 (919)
T ss_pred ccCC--CceeCCCCCCcccchhhhHHHHHHHHHHHHhhhhhhhhcCCC--CCCCHHHHHHHHhcCCcCCcchhhhHhhc-
Confidence 6542 34799999999999999999999999999999999987 543 999999999999999999875323 3444
Q ss_pred cch-hhHHHhhhcCCC-cccCCCchhhhhcccccCCcHHHHHHHhhCCCcccccccccCCCCCCCCccccCCCCcccchh
Q 002839 344 IPF-EMLKEIFRTDGD-LLKFPMPQVIKEDESAWRTDEEFTREMLAGLNPVVICCLKEFPPTSKLNPELYGNQRSTITQN 421 (874)
Q Consensus 344 ~p~-~~~~~~~~~~~~-~~k~p~P~v~~~~~~~W~~DeeFarQ~LaG~NP~~I~r~~~~P~~s~ld~~~yg~~~s~it~e 421 (874)
+|+ +++|++ +++++ ++|||+|+||+.|+++|++|+|||||+|||+||++|+||++||++|+|||+.||+++|+||++
T Consensus 387 ~p~~~~~~~~-~~~~~~~lkf~~P~vi~~d~~~W~~DeeFarQ~LaGvNP~~I~rl~e~P~~s~ld~~~yg~~~s~it~e 465 (919)
T PLN02264 387 FPLPKVVTTL-QESSEGLLKYDTPKILSKDKFAWLRDDEFARQAIAGINPVNIERVKVFPPVSNLDPEIYGPQHSALTED 465 (919)
T ss_pred CChHHHHHHh-hhcccccccCCCCceeecChhhccCHHHHHHHHHcCCCchhhhhhhhcCCCCCCCHhhcCCccchhhHH
Confidence 998 889998 67777 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhcCCCCCHHHHHhcCCEEEecccchhhhhhhcccCCCC-ccccceeEEeecCCCceeeEEEEecCCCCCCCCCCCCC
Q 002839 422 DIENNLDGLTVDEAIEKNKLFILDHHDSLMTYLRRINTTST-KTYASRTILFLKADGTLKPVAIELSLPHPDGDQYGAVS 500 (874)
Q Consensus 422 ~i~~~l~G~tl~~al~~grLFi~Dy~d~~lp~l~~in~~~~-~~yA~~~Lffl~~dg~L~PIAIqL~~~~~~~~~~~~~~ 500 (874)
||++.|+|+||+|||++|||||+||||++|||+++||...+ +.|||+||||++++|+|+||||||+++++.++ ...+
T Consensus 466 ~v~~~L~G~Tl~eAl~~~rLFilDy~d~~lp~l~~in~~~g~~~YAprtLFfL~~dG~L~PlAIqL~~p~~~~~--~~~~ 543 (919)
T PLN02264 466 HIIGHLDGLSVQQALEENRLFMVDYHDIYLPFLDRINALDGRKAYATRTIFFLTRLGTLKPIAIELSLPPSGPN--SRSK 543 (919)
T ss_pred HHhhccCCCcHHHHHHcCCEEEEeChhhhhhhhhhhccCCCcEeEcceEEEEECCCCCEeeEEEEecCCCCCCC--cCcc
Confidence 99999999999999999999999999999999999998665 49999999999999999999999999865432 3568
Q ss_pred eeecCCCCCCCCchhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhHHHHHHhccCCCcCchhhcccccccchhchhHHHHH
Q 002839 501 KVYTPSEDGVKGSIWQLAKAYVAVNDSGHHQLISHWLNTHAAIEPFVIATNRQLSVLHPIYKLLHPHFRDTMNINAFARQ 580 (874)
Q Consensus 501 ~VftP~d~~~~~~~W~LAK~~v~~aD~~~HqlisHllrTHlv~Epf~IAt~RqLs~~HPI~kLL~PHfr~Tl~IN~~AR~ 580 (874)
+||||+++++++|.|+||||||++||++|||+|+||++||++||||+|||+||||.+|||||||.||||+||+||++||+
T Consensus 544 ~VftP~~d~~~~w~W~LAK~~V~~aD~~~HQlisHllrTHlv~EpfiIAt~RqLs~~HPI~kLL~PHfr~TL~INalAR~ 623 (919)
T PLN02264 544 RVVTPPVDATSNWMWQLAKAHVCSNDAGVHQLVNHWLRTHACLEPFILAAHRQLSAMHPIFKLLDPHMRYTLEINALARQ 623 (919)
T ss_pred eeECCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhhhcccCCccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999766678899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCceeeeeecChhhHHHHHHHHHcC-CCCCCCCCchhHHhcCCCCCCCCCCcccccCCCCCccchhhHHHHHHHHH
Q 002839 581 ILINAGGVLEITVFPGKYAMELSSALYKS-WSFPEQALPEDLKKRGVAVEDPNSPHGLRLLIEDYPYAVDGLEIWASIKK 659 (874)
Q Consensus 581 ~LI~~gG~id~~~~~g~~~~elss~~yk~-w~f~~~~lP~DL~~RG~~~~D~~~~~gl~l~l~dYpYrdDgL~IW~AI~~ 659 (874)
.|||+||++|++|++|+++|||++++|++ |+|++++||+||++|||+++|+++||||++.|||||||+|||+||+||++
T Consensus 624 ~LIn~gGiid~~f~pg~~~~elss~aYk~~W~F~~~~LP~DL~~RGv~~~D~~~phgl~l~ipdYPYrdDGL~iW~AIk~ 703 (919)
T PLN02264 624 TLISADGVIESCFTAGQYGMEISAAAYKNSWRFDMEGLPADLIRRGMAVPDPTQPHGLKLLIEDYPYANDGLLLWSAIQT 703 (919)
T ss_pred hccCCCceEEEeeccchhHHHHHHHHHHhccCCccccCHHHHHHcCCCCCCcccccchhhccCCCcchhhHHHHHHHHHH
Confidence 99999999999999999999999999996 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHhchhhcCCCccccCChHHHHHHHHHHhccCCCCCCCCCCCCCCChHHHHHHHhhhhhhccchhhhhccCCcccccc
Q 002839 660 WVQDYCYFYYKNDDMVKEDSELQSWWKELREEGHGDKKDEPWWPKMQNREELIDSCTIIIWVASALHAAINFGQYPYAGY 739 (874)
Q Consensus 660 fV~~yv~~YY~~D~~V~~D~ELQaW~~Ei~~~G~gd~kd~~~~P~l~T~~eLv~~lT~iIf~aSaqHAAVNfgQy~y~gf 739 (874)
||++||++||++|++|++|.|||+||+||++.||+++++++|||+|+|++|||++||+|||+|||||||||||||+|+||
T Consensus 704 ~V~~yv~~YY~~D~~V~~D~ELQaW~~Ei~~~Gh~d~~d~~~~p~l~T~~eLi~~lT~IIf~aSaqHAAVNFgQydy~gf 783 (919)
T PLN02264 704 WVRTYVERYYPDPSLICTDKELQAWYSESINVGHADLRDADWWPKLSTVDDLVSILTTLIWLASAQHAALNFGQYPYGGY 783 (919)
T ss_pred HHHHHHHHhCCChhhhcCCHHHHHHHHHHHhccCCCCcCCCCCCCCCCHHHHHHHHHHHHHhhhhhhhhhhcCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccccCCCCCCCCchhhhcccCchHHHHhhcCcHHHHHHHHHHHHHhccCCCCccccCCcCCC-CCCCChHHHHHH
Q 002839 740 LPNRPTISRRFMPEEGTPEYDELESNPDKVFLKTITAQLQTILGISLIEILSRHSTDEVYLGQRDTP-EWTSDEAPLQAF 818 (874)
Q Consensus 740 ~PN~P~~~r~p~P~~g~~~~~~l~~~pe~~~L~~LP~~~qa~~~m~~~~lLS~h~~de~yLG~~~~~-~~~~d~~~~~a~ 818 (874)
+||+|++||+|||++++++|++|..+|++++|++||++.||+.+|+++++||+|++||+|||+|..+ +|+.|+++++||
T Consensus 784 vPN~P~~~rrp~P~~~~~e~~~~~~~pe~~~L~tlP~~~qt~~~ms~~~iLS~hs~dE~yLG~~~~~~~w~~D~~~~~af 863 (919)
T PLN02264 784 VPNRPPLMRRLIPDESDPEYASFLADPQKYYFSSMPSLLQTTKFMAVVDTLSTHSPDEEYIGERQQPSIWTGDAEIVEAF 863 (919)
T ss_pred CCCCChHhcCCCCCCCChhhhhhhcChHHHHHHHCCCHHHHHHHHHHHHHHhhcCCCceeccCCCCccccccCHHHHHHH
Confidence 9999999999999888899999999999999999999999999999999999999999999998765 899999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCccccCCCCcCcccccccCCCCCCCcCccCccccC
Q 002839 819 DEFGKKLAEVEEKIISRNHNKNLKNRVGPVKMPYTLLVPTSEGGLTGKGIPNSVSI 874 (874)
Q Consensus 819 ~~F~~~L~~ie~~I~~RN~~~~lknr~g~~~~PY~~L~Pss~~g~t~~~IPnSIsI 874 (874)
++|+++|++||++|++||++++||||+||+++||+||+|+|+||||||||||||||
T Consensus 864 ~rF~~~L~eIe~~I~~RN~~~~~knR~G~~~~PY~lL~P~s~~G~T~~gIPNSISI 919 (919)
T PLN02264 864 YGFSAEIGRIEKEIEKRNADPSRRNRCGAGVLPYELLAPSSEPGVTCRGVPNSVSI 919 (919)
T ss_pred HHHHHHHHHHHHHHHHHcCCccccccCCCCCCCceeeCCCCCCCCCcCCCCCcccC
Confidence 99999999999999999999999999999999999999999999999999999998
No 4
>PF00305 Lipoxygenase: Lipoxygenase; InterPro: IPR013819 Lipoxygenases (1.13.11.- from EC) are a class of iron-containing dioxygenases which catalyses the hydroperoxidation of lipids, containing a cis,cis-1,4-pentadiene structure. They are common in plants where they may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. In mammals a number of lipoxygenases isozymes are involved in the metabolism of prostaglandins and leukotrienes []. Sequence data is available for the following lipoxygenases: Plant lipoxygenases (1.13.11.12 from EC, IPR001246 from INTERPRO). Plants express a variety of cytosolic isozymes as well as what seems to be a chloroplast isozyme []. Mammalian arachidonate 5-lipoxygenase (1.13.11.34 from EC, IPR001885 from INTERPRO). Mammalian arachidonate 12-lipoxygenase (1.13.11.31 from EC, IPR001885 from INTERPRO). Mammalian erythroid cell-specific 15-lipoxygenase (1.13.11.33 from EC, IPR001885 from INTERPRO). The iron atom in lipoxygenases is bound by four ligands, three of which are histidine residues []. Six histidines are conserved in all lipoxygenase sequences, five of them are found clustered in a stretch of 40 amino acids. This region contains two of the three iron-ligands; the other histidines have been shown [] to be important for the activity of lipoxygenases. This entry represents the C-terminal region of these proteins.; GO: 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 3FG3_D 3FG1_C 3FG4_D 3DY5_A 2FNQ_B 2P0M_A 3RDE_B 2IUJ_A 1RRL_B 1JNQ_A ....
Probab=100.00 E-value=9.3e-204 Score=1772.45 Aligned_cols=662 Identities=59% Similarity=1.000 Sum_probs=580.5
Q ss_pred CchhhHhHHHHHHHhhCCCcccccccCceeecccccCCCCCCCCCCcccccCCCCCCCCCCCcccCCCCCC-CCCCCchh
Q 002839 187 PGPLRYYREQELVNLRGDVTTELQEHDRVYDYAYYNDLGDPKKGKKFERPVLGGSADYPYPRRGRTGRKLA-EDSKSESR 265 (874)
Q Consensus 187 p~~l~~~R~~EL~~lrg~g~g~rk~~driYdy~~yndlG~Pd~~~~~~rpvlggs~~~pyprr~rtgr~~~-~d~~~e~r 265 (874)
|.+|+++|++||++|||||+||||+||||||||+|||||+||++++++|||||||++|||||||||||+|+ +||.+|+|
T Consensus 1 ~~~l~~~R~~eL~~lrG~g~gerk~~dRiYdYd~YnDLG~pd~~~~~~RpvlGgs~~~PYPRR~RTGr~~~~~Dp~sEsr 80 (667)
T PF00305_consen 1 PAGLKKLREEELKNLRGDGTGERKEWDRIYDYDVYNDLGNPDKGPELARPVLGGSKEFPYPRRCRTGRPPTKTDPKSESR 80 (667)
T ss_dssp SGGGHHHHHHHHHHHHTTS-S---TT-----EE-B-SSSBGGGTGCG----BSSSSSS----EE----SBESSCTTSBGC
T ss_pred ChHHHHHHHHHHHHhcCCCCCccccccceeeeecccCCCCCCCCCcCCCCCCCCCCCCCCCccCCCCCCCCCCCccccCc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred hhccccCccccCCCCccCcccccchHHHHHHHHHHhhhhhhhcc-CCCCCCCCCHHHHHHhhcCCCCCCCCchhhhhccc
Q 002839 266 LSIVYSLNIYVPRDERFGHLKMSDFLAFALKSIAQVIKPALESL-DSSPNEFDSFDDILKLYEGGIDLPNNLLDDIRKHI 344 (874)
Q Consensus 266 ~~~~~~~~~yvPrDe~F~~~K~~~f~~~~~~~~~~~~~p~l~~~-~~~~~~f~sf~di~~ly~~~~~~p~~~~~~~~~~~ 344 (874)
+.++||||||+|++.|+++|.++++||++|.++|.|+++ ..+..+|+||+||++||++|+++| .+.+++.+
T Consensus 81 -----~~~~YVPRDE~F~~~K~~dF~~~~lks~~~~llP~L~~~~~~~~~eF~sF~dId~LY~~g~~l~---~~~~~~~~ 152 (667)
T PF00305_consen 81 -----SGDIYVPRDERFSEVKQSDFLANALKSLLHALLPALKSLFDDTPNEFDSFEDIDDLYEEGIKLP---TDLLKKLI 152 (667)
T ss_dssp ------SSGGS-GGGS-SCSSGGGHHHHHHHHHHHTHHHHHHHHTTSSTSSCSSHHHHHHHHTTTEE-----HHHHCCHT
T ss_pred -----cccccCCccccccchhHHHHHHHHHHHHHHhHHHHHHHHhcccCcccCCHHHHHHHHhccccch---hhHhhhcC
Confidence 568999999999999999999999999999999999987 556889999999999999999998 34567778
Q ss_pred chhhHHHhhhcCCC-cccCCCchhhhhcccccCCcHHHHHHHhhCCCcccccccccCCCCCCCCccccCCCCcccchhhH
Q 002839 345 PFEMLKEIFRTDGD-LLKFPMPQVIKEDESAWRTDEEFTREMLAGLNPVVICCLKEFPPTSKLNPELYGNQRSTITQNDI 423 (874)
Q Consensus 345 p~~~~~~~~~~~~~-~~k~p~P~v~~~~~~~W~~DeeFarQ~LaG~NP~~I~r~~~~P~~s~ld~~~yg~~~s~it~e~i 423 (874)
|+++++++++++++ ++|||+|+|+++++++|++|+|||||+|||+||++|+||++||++++||+++||+++|+||++||
T Consensus 153 ~~~~~~~~~~~~~~~~~kf~~p~v~~~~~~~W~~DeeFarQ~LaG~NP~~I~r~~e~P~~~~ld~~~yg~~~s~it~e~i 232 (667)
T PF00305_consen 153 PLELLKELFRTDGENILKFPTPQVIERDRFAWRTDEEFARQRLAGVNPVVIRRLTEFPPKSKLDPAIYGDQESPITDEHI 232 (667)
T ss_dssp TSTTCCTTSBETSSSEEB----HHHHCHHHHTTSHHHHHHHHHHSSSTTSEEE-SSSSTTS-SSHHCCTSSB-STTHHHH
T ss_pred cHHHHHHHHhhcccceeeCCCCccchhhhhccCChHHHHHHHHcCCCchHhhccccCCccccccHhhcCCccCCchHHHh
Confidence 99999999999988 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHhcCCEEEecccchhhhhhhcccCCCCccccceeEEeecCCCceeeEEEEecCCCCCCCCCCCCCeee
Q 002839 424 ENNLDGLTVDEAIEKNKLFILDHHDSLMTYLRRINTTSTKTYASRTILFLKADGTLKPVAIELSLPHPDGDQYGAVSKVY 503 (874)
Q Consensus 424 ~~~l~G~tl~~al~~grLFi~Dy~d~~lp~l~~in~~~~~~yA~~~Lffl~~dg~L~PIAIqL~~~~~~~~~~~~~~~Vf 503 (874)
+..|+|+||++||++|||||+|||++++|++++|+..+.+.|||+||||++++|+|+||||||++|++.+. +..++||
T Consensus 233 ~~~l~g~tl~~al~~~rLfi~Dy~~~~~~~~~~i~~~~~~~~A~~~Lf~l~~~g~L~PlAIqL~~p~~~~~--~~~~~v~ 310 (667)
T PF00305_consen 233 EPQLEGLTLEEALKDGRLFILDYHDLFGPYLNKINEKGRYAYAPRALFFLNPDGTLKPLAIQLSQPGPEGP--PQFNPVF 310 (667)
T ss_dssp HHHCHCS-HHHHHHTT-EEEEEEGGGTTHHHHHHTTCCGBG-EEEEEEEEETTSEEEEEEEECSECBTTCS---EEEEEE
T ss_pred hhccCCCcHHHHHhcCCeEEEeehhhccccccccccCCcEeccceeEEEEcCCCCEeeeEEeccCCCCccc--Cccceee
Confidence 99999999999999999999999999999999999966679999999999999999999999998854332 4568999
Q ss_pred cCCCCCCCCchhHHHHHHHHhhhhhhhHHHHHHhhhhhhhhHHHHHHhccCCCcCchhhcccccccchhchhHHHHHhcc
Q 002839 504 TPSEDGVKGSIWQLAKAYVAVNDSGHHQLISHWLNTHAAIEPFVIATNRQLSVLHPIYKLLHPHFRDTMNINAFARQILI 583 (874)
Q Consensus 504 tP~d~~~~~~~W~LAK~~v~~aD~~~HqlisHllrTHlv~Epf~IAt~RqLs~~HPI~kLL~PHfr~Tl~IN~~AR~~LI 583 (874)
||+++++.+|.|+|||+||++||+++||+|+||++||+|||||+|||+||||.+|||||||.||||+||+||++||++||
T Consensus 311 tP~~d~~~~~~W~lAK~~v~~aD~~~HqlisHll~THlv~Ep~~vAt~R~Ls~~HPi~kLL~PH~r~tl~IN~~Ar~~Li 390 (667)
T PF00305_consen 311 TPSDDGTEDWLWLLAKAHVQVADANYHQLISHLLRTHLVMEPFIVATHRQLSEMHPIYKLLHPHFRYTLAINALARQSLI 390 (667)
T ss_dssp -TTSSSHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHS-TTSHHHHHHGGGGTTHHHHHHHHHHHTS
T ss_pred ecCCCCccchHHHHHHHHHHhhhHHHHHHHhhhhhhhhhhHHHHHHHhcCCCCCCCceeeccceeecchhhhHHHHHHhh
Confidence 99955555688999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeeeeecChhhHHHHHHHHHcCCCCCCCCCchhHHhcCCCCCCCCCCcccccCCCCCccchhhHHHHHHHHHHHHH
Q 002839 584 NAGGVLEITVFPGKYAMELSSALYKSWSFPEQALPEDLKKRGVAVEDPNSPHGLRLLIEDYPYAVDGLEIWASIKKWVQD 663 (874)
Q Consensus 584 ~~gG~id~~~~~g~~~~elss~~yk~w~f~~~~lP~DL~~RG~~~~D~~~~~gl~l~l~dYpYrdDgL~IW~AI~~fV~~ 663 (874)
++||+||++|++|+++|+|++++|++|+|++++||+||++|||+++|++++||+++.|||||||+|||+||+||++||++
T Consensus 391 ~~gG~id~~~~~g~~~~~l~~~~y~~~~f~~~~lP~dL~~RG~~~~D~~~~~g~~~~l~~YpY~dDgl~iW~aI~~~V~~ 470 (667)
T PF00305_consen 391 NAGGIIDKTFSPGKYGMELSSRAYKNWRFDDQALPADLKKRGMAVDDPSSPHGLRLVLPDYPYRDDGLLIWDAIKKFVSD 470 (667)
T ss_dssp STTSHHHHHSTTTTTHHHHHHHHHTT--GGGGSHHHHHHHTTSEEE-TTSTTSEETTSTT-HHHHHHHHHHHHHHHHHHH
T ss_pred ccCcccccccchhhHHHHHHHHHHhhCCcccccCHHHHHhhcccccccccccccccccccCChhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hchhhcCCCccccCChHHHHHHHHHHhccCCCCCCCCCCCCCCChHHHHHHHhhhhhhccchhhhhccCCcccccccCCC
Q 002839 664 YCYFYYKNDDMVKEDSELQSWWKELREEGHGDKKDEPWWPKMQNREELIDSCTIIIWVASALHAAINFGQYPYAGYLPNR 743 (874)
Q Consensus 664 yv~~YY~~D~~V~~D~ELQaW~~Ei~~~G~gd~kd~~~~P~l~T~~eLv~~lT~iIf~aSaqHAAVNfgQy~y~gf~PN~ 743 (874)
||++||++|++|++|.|||+||+||+++|||++++.+||++|+|+++||++||+|||+||+||||||||||+|+||+||+
T Consensus 471 ~v~~yY~~d~~V~~D~ELQaW~~Ei~~~G~~~~~~~~~~~~i~t~~~Li~~lT~iI~~~S~qHaAVNfgQ~~y~g~~PN~ 550 (667)
T PF00305_consen 471 YVNLYYKSDEAVANDTELQAWWNEIRTVGHGDKKDEGFPPKIKTRDELIDILTTIIFTASAQHAAVNFGQYDYYGFVPNR 550 (667)
T ss_dssp HHHHHSSSHHHHHT-HHHHHHHHHHHHTTTTGGTTGTTSSSSSSHHHHHHHHHHHHHHHTHHHHHHHTTHHHHHSSGGGS
T ss_pred hhhhhcCCcceeCcCHHHHHHHHHHhcccccCcCcCCCCCCCCCHHHHHHHHHHHeeecchhhhhhcccccceeeecCCC
Confidence 99999999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCch--hhhcccCchHHHHhhcCcHHHHHHHHHHHHHhccCCCCccccCCcCCCCCCCChHHHHHHHHH
Q 002839 744 PTISRRFMPEEGTPE--YDELESNPDKVFLKTITAQLQTILGISLIEILSRHSTDEVYLGQRDTPEWTSDEAPLQAFDEF 821 (874)
Q Consensus 744 P~~~r~p~P~~g~~~--~~~l~~~pe~~~L~~LP~~~qa~~~m~~~~lLS~h~~de~yLG~~~~~~~~~d~~~~~a~~~F 821 (874)
|++||+++|++++++ +++|..+||+++|++||++.||+.+|+++++||+|++||+|||+|+...|+.|+++++|+++|
T Consensus 551 P~~~r~~~P~~~~~~~~~~~l~~~~e~~~l~~LP~~~~a~~~~~~~~~LS~~~~de~~Lg~~~~~~w~~d~~~~~a~~~F 630 (667)
T PF00305_consen 551 PTALRRPMPPPTTKEVTYEELLKDPEKDFLSTLPSKQQALLQMAVLELLSRHSPDEEYLGQYPEPHWFSDPEAKAAFERF 630 (667)
T ss_dssp -S-BSSSS--TSSSH--HHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTCB-TT--BTTT-SSTTSSSSHHHHHHHHHH
T ss_pred ChhhcccCCCCCcchhhhhhhccChHHHHHHhcCCHHHHHHHHHHHHHhccCCCCcccccCcCcccccccHHHHHHHHHH
Confidence 999999999888777 889999999999999999999999999999999999999999999988899999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCccccCCCCcCcccccccC
Q 002839 822 GKKLAEVEEKIISRNHNKNLKNRVGPVKMPYTLLVPT 858 (874)
Q Consensus 822 ~~~L~~ie~~I~~RN~~~~lknr~g~~~~PY~~L~Ps 858 (874)
+++|++||++|++||+++++|||+||+++||+||+||
T Consensus 631 ~~~L~~ie~~I~~RN~~~~~~nr~g~~~~PY~~L~Ps 667 (667)
T PF00305_consen 631 QEELKEIEEEIDERNKDRKLKNRNGPGKVPYTYLLPS 667 (667)
T ss_dssp HHHHHHHHHHHHHHHTTSSSGGGTTTTT----TTSST
T ss_pred HHHHHHHHHHHHHHhCCccccccCCCCCCCccccCCC
Confidence 9999999999999999999999999999999999996
No 5
>cd01751 PLAT_LH2 PLAT/ LH2 domain of plant lipoxygenase related proteins. Lipoxygenases are nonheme, nonsulfur iron dioxygenases that act on lipid substrates containing one or more (Z,Z)-1,4-pentadiene moieties. In plants, the immediate products are involved in defense mechanisms against pathogens and may be precursors of metabolic regulators. The generally proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=100.00 E-value=8.7e-39 Score=309.83 Aligned_cols=136 Identities=54% Similarity=0.906 Sum_probs=128.4
Q ss_pred eeeEEEEEEeeccccccccccchhhhHhhhcCCeEEEEEeecccCCCCcCCCcCcccCcccccccccccCCCCCCCceEE
Q 002839 34 KIKGTVVLMKKNVLDFNDFNASFLDRFHELLGRKVTLQLISAVHGEPAENGLQAGKIGKLAHIEGWIPKCTPLAAGESAF 113 (874)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~v~l~lvS~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 113 (874)
++||+|++|+|++++++++. +.+|++.|++||+|+|||||++++|+ || +||++++++|++|.++. +++..|
T Consensus 2 ~vka~V~v~~k~~~~~~~~~-~~~D~~~~llGk~v~lqLVSs~~d~~--tg--~~k~~~~~~l~~~~~~~----~~e~~y 72 (137)
T cd01751 2 KVKATVTVMKKNKLDLNDDG-SGLDDLDDLLGRSLLLELVSSELDPK--TG--KGKKGKAAFLEGWGKSL----AGESAY 72 (137)
T ss_pred EEEEEEEEEEeecccccccc-chhhhHHHhhCCeEEEEEEEeeecCC--CC--CcccccceeeecccccC----CcceEE
Confidence 68999999999999999987 99999999999999999999999765 77 99999999999998643 667799
Q ss_pred EEEeecCCCCCCceeEEeecCCCCceeEeEEEEeecCCCceEEEeecccccCCCCCCcceeeecC
Q 002839 114 NVTFEWDEDIGVPGAFLIRNNHHSEFYLKTLTLEDVPGEGRVHFVCNSWVYPAKDYNTDRIFFTN 178 (874)
Q Consensus 114 ~v~f~~~~~~G~pgai~v~n~~~~e~fl~~i~l~~~p~~~~~~F~c~sWv~~~~~~~~~r~ff~n 178 (874)
+++|+||++||+||||+|+|+|++||||++|+|+++|++++|||+|||||||+++++.+||||+|
T Consensus 73 ~~~F~v~~~fG~pGAi~V~N~h~~EffLksitLe~~p~~g~v~F~CNSWVyp~~~~~~~RiFFsN 137 (137)
T cd01751 73 EAEFEVPASFGPPGAVLVKNEHHSEFFLKSITLEGFGGSGTITFVCNSWVYPKKDYPDKRIFFPN 137 (137)
T ss_pred EEEEEeecccCCccEEEEEECCCceEEEEEEEEeCCCCCccEEEEccccCccCCCCCCCCEEccC
Confidence 99999999999999999999999999999999999998899999999999999999999999997
No 6
>smart00308 LH2 Lipoxygenase homology 2 (beta barrel) domain.
Probab=99.11 E-value=4.4e-10 Score=104.25 Aligned_cols=85 Identities=45% Similarity=0.787 Sum_probs=62.8
Q ss_pred eEEEEEeecccCCCCcCCCcCcccCcccccccccccCCCCCCCceEEEEEeecCCCCCCceeEEeecCC-CCceeEeEEE
Q 002839 67 KVTLQLISAVHGEPAENGLQAGKIGKLAHIEGWIPKCTPLAAGESAFNVTFEWDEDIGVPGAFLIRNNH-HSEFYLKTLT 145 (874)
Q Consensus 67 ~v~l~lvS~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~v~f~~~~~~G~pgai~v~n~~-~~e~fl~~i~ 145 (874)
+|.|+|++++.+ . | .+....++.|. ...+ ..|+..|.++.++|++++|.|+|.+ ..+|||++|+
T Consensus 20 ~V~l~L~g~~~~-s---~-----~~~~~~~~~~~-----f~~g-~~~~f~v~~~~~lG~l~~v~v~~d~~~~~w~l~~V~ 84 (105)
T smart00308 20 SVSLSLVGAEGD-G---K-----ESKLDYLFKGI-----FARG-STYEFTFDVDEDFGELGAVKIKNEHRHPEWFLKSIT 84 (105)
T ss_pred eEEEEEEeCCCC-C---c-----ceeccccCCcc-----ccCC-ceEEEEEecccCCCCcEEEEEEeCCCCCCeEEEEEE
Confidence 699999988742 2 2 11223344442 1112 2455555589999999999999998 8999999999
Q ss_pred EeecCCCceEEEeecccccCC
Q 002839 146 LEDVPGEGRVHFVCNSWVYPA 166 (874)
Q Consensus 146 l~~~p~~~~~~F~c~sWv~~~ 166 (874)
|++.+++..++|+||+||+++
T Consensus 85 V~~~~~~~~~~F~c~~Wl~~~ 105 (105)
T smart00308 85 VKDLPTGGKYHFPCNSWVYPD 105 (105)
T ss_pred EEECCCCCEEEEEcCceeCCC
Confidence 987777889999999999863
No 7
>PF01477 PLAT: PLAT/LH2 domain; InterPro: IPR001024 Lipoxygenases (1.13.11.- from EC) are a class of iron-containing dioxygenases which catalyses the hydroperoxidation of lipids, containing a cis,cis-1,4-pentadiene structure. They are common in plants where they may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. In mammals a number of lipoxygenases isozymes are involved in the metabolism of prostaglandins and leukotrienes []. Sequence data is available for the following lipoxygenases: Plant lipoxygenases (1.13.11.12 from EC, IPR001246 from INTERPRO). Plants express a variety of cytosolic isozymes as well as what seems to be a chloroplast isozyme []. Mammalian arachidonate 5-lipoxygenase (1.13.11.34 from EC, IPR001885 from INTERPRO). Mammalian arachidonate 12-lipoxygenase (1.13.11.31 from EC, IPR001885 from INTERPRO). Mammalian erythroid cell-specific 15-lipoxygenase (1.13.11.33 from EC, IPR001885 from INTERPRO). The iron atom in lipoxygenases is bound by four ligands, three of which are histidine residues []. Six histidines are conserved in all lipoxygenase sequences, five of them are found clustered in a stretch of 40 amino acids. This region contains two of the three iron-ligands; the other histidines have been shown [] to be important for the activity of lipoxygenases. This entry represents a domain found in lipoxygenases and other enzymes. It is known as the PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology) domain, is found in a variety of membrane or lipid associated proteins. Structurally, this domain forms a beta-sandwich composed of two sheets of four strands each [, , ]. The most highly conserved regions coincide with the beta-strands, with most of the highly conserved residues being buried within the protein. An exception to this is a surface lysine or arginine that occurs on the surface of the fifth beta-strand of the eukaryotic domains. In pancreatic lipase, the lysine in this position forms a salt bridge with the procolipase protein. The conservation of a charged surface residue may indicate the location of a conserved ligand-binding site. It is thought that this domain may mediate membrane attachment via other protein binding partners.; GO: 0005515 protein binding; PDB: 3FG3_D 3FG1_C 3FG4_D 3DY5_A 2FNQ_B 3O8Y_B 3V99_B 3V92_A 3V98_B 1HPL_A ....
Probab=98.85 E-value=5.8e-09 Score=97.18 Aligned_cols=67 Identities=30% Similarity=0.625 Sum_probs=59.5
Q ss_pred CCceEEEEEeecCCCCCCceeEEeecC---CCCceeEeEEEEeecCCCceEEEeecccccCCCCCCcceeee
Q 002839 108 AGESAFNVTFEWDEDIGVPGAFLIRNN---HHSEFYLKTLTLEDVPGEGRVHFVCNSWVYPAKDYNTDRIFF 176 (874)
Q Consensus 108 ~~~~~y~v~f~~~~~~G~pgai~v~n~---~~~e~fl~~i~l~~~p~~~~~~F~c~sWv~~~~~~~~~r~ff 176 (874)
...++|.++ .+.++|++.+|.|.+. +.+.|||++|+|...+.+..+.|+||+||....+++.+|+||
T Consensus 44 g~~d~F~i~--~~~~lG~i~~i~i~~~~~~~~~~W~l~~V~V~~~~~~~~~~F~~~~Wl~~~~~~~~~rvf~ 113 (113)
T PF01477_consen 44 GSTDTFTIE--TPEDLGEIQKIRIWHDGSGPSPSWYLDSVVVTDGETGRTYTFPCNRWLDPDKDYKTERVFF 113 (113)
T ss_dssp TEEEEEEEE--ESSCGCSEEEEEEEEESSSSSSEEEEEEEEEEETTTSEEEEEEEEEEESTTEGCSSEEEEE
T ss_pred CceEEeeee--ecccCCCCcEEEEEEccCCCccceEEEEEEEEeCCCCcEEEEEcCCEECCCCCCCCccEEC
Confidence 345667776 5789999999999987 789999999999877778899999999999999999999998
No 8
>cd00113 PLAT PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates.
Probab=98.53 E-value=2.9e-07 Score=86.83 Aligned_cols=65 Identities=22% Similarity=0.380 Sum_probs=55.4
Q ss_pred ceEEEEEeecCCCCCCceeEEeecCCCC---ceeEeEEEEeecCCCceEEEeecccccCCCCCCcceeee
Q 002839 110 ESAFNVTFEWDEDIGVPGAFLIRNNHHS---EFYLKTLTLEDVPGEGRVHFVCNSWVYPAKDYNTDRIFF 176 (874)
Q Consensus 110 ~~~y~v~f~~~~~~G~pgai~v~n~~~~---e~fl~~i~l~~~p~~~~~~F~c~sWv~~~~~~~~~r~ff 176 (874)
+.+|.|+ .+.++|++.+|.|++.+.. +|||++|+|.....+..++|+||+||.....++..|+|.
T Consensus 49 ~~~f~v~--~~~~lG~i~~v~l~~d~~g~~~~W~l~~V~V~~~~~~~~~~F~~~~Wl~~~~~~~~~r~~~ 116 (116)
T cd00113 49 TDTFQID--LKLDIGDITKVYLRRDGSGLSDGWYCESITVQALGTKKVYTFPVNRWVLGGKWYTSVRSLK 116 (116)
T ss_pred ceEEEEe--ccCCCcCeEEEEEEECCCCCCCCEEEeEEEEEeCCCCCEEEEEeCCCcccCCCCCceeecC
Confidence 4567666 5789999999999987654 999999999877767899999999999988888888874
No 9
>cd02899 PLAT_SR Scavenger receptor protein. A subfamily of PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates. This subfamily contains Toxoplasma gondii Scavenger protein TgSR1.
Probab=98.18 E-value=3.2e-06 Score=80.14 Aligned_cols=55 Identities=13% Similarity=0.285 Sum_probs=46.9
Q ss_pred CCceEEEEEeecCCCCCCceeEEeecCC-CCceeEeEEEEeecCCCceEEEeecccccCC
Q 002839 108 AGESAFNVTFEWDEDIGVPGAFLIRNNH-HSEFYLKTLTLEDVPGEGRVHFVCNSWVYPA 166 (874)
Q Consensus 108 ~~~~~y~v~f~~~~~~G~pgai~v~n~~-~~e~fl~~i~l~~~p~~~~~~F~c~sWv~~~ 166 (874)
..+++|.|+ +.++|+.-.|.|.|.. .+.|||++|+|+. |++..++||||+|+...
T Consensus 44 G~~d~F~v~---~~dLG~l~~i~l~n~g~~~~Wf~~~V~V~~-~~g~~~~Fpc~rWla~~ 99 (109)
T cd02899 44 GSLKRIRFR---AADVGDINAIILSNTALNDPWYCDYVRIKS-EDGKVFAFNVKRWIGYP 99 (109)
T ss_pred CceEEEEEC---ccccCceEEEEEECCCCCCCceeeEEEEEC-CCCCEEEEEcceeeCCc
Confidence 346788877 7999999999998864 7889999999985 87788999999999753
No 10
>cd01753 PLAT_LOX PLAT domain of 12/15-lipoxygenase. As a unique subfamily of the mammalian lipoxygenases, they catalyze enzymatic lipid peroxidation in complex biological structures via direct dioxygenation of phospholipids and cholesterol esters of biomembranes and plasma lipoproteins. Both types of enzymes are cytosolic but need this domain to access their sequestered membrane or micelle bound substrates.
Probab=97.87 E-value=3e-05 Score=73.84 Aligned_cols=58 Identities=19% Similarity=0.381 Sum_probs=47.6
Q ss_pred CCceEEEEEeecCCCCCCceeEEeecC---CCCceeEeEEEEeecCCCceEEEeecccccCCCC
Q 002839 108 AGESAFNVTFEWDEDIGVPGAFLIRNN---HHSEFYLKTLTLEDVPGEGRVHFVCNSWVYPAKD 168 (874)
Q Consensus 108 ~~~~~y~v~f~~~~~~G~pgai~v~n~---~~~e~fl~~i~l~~~p~~~~~~F~c~sWv~~~~~ 168 (874)
..+++|.|+ .+.++|++-.|.|++. ....|||+.|+|++. .+...+||||+|+.....
T Consensus 47 G~~d~F~v~--~~~~lG~l~~i~i~~d~~g~~~~W~l~~V~V~~~-~~~~~~F~c~rWl~~~~~ 107 (113)
T cd01753 47 GAVDEYKVK--VPEDLGELLLVRLRKRKYLLFDAWFCNYITVTGP-GGDEYHFPCYRWIEGYGT 107 (113)
T ss_pred CCeeEEEEe--cccCCCCcEEEEEEECCCCCCCCeeecEEEEEcC-CCCEEEEEhHHeECCCCE
Confidence 346678888 5789999999999875 378999999999854 467899999999987643
No 11
>cd01756 PLAT_repeat PLAT/LH2 domain repeats of family of proteins with unknown function. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=97.71 E-value=0.00014 Score=69.70 Aligned_cols=66 Identities=18% Similarity=0.376 Sum_probs=51.7
Q ss_pred CCceEEEEEeecCCCCCCceeEEeecCC---CCceeEeEEEEeecCCCceEEEeecccccCCCC-CCcceeee
Q 002839 108 AGESAFNVTFEWDEDIGVPGAFLIRNNH---HSEFYLKTLTLEDVPGEGRVHFVCNSWVYPAKD-YNTDRIFF 176 (874)
Q Consensus 108 ~~~~~y~v~f~~~~~~G~pgai~v~n~~---~~e~fl~~i~l~~~p~~~~~~F~c~sWv~~~~~-~~~~r~ff 176 (874)
...++|.++ . .++|++-.|.|+... ...|||+.|+|.....+...+||||+|+...+. -...|+|.
T Consensus 49 Gs~d~F~i~--~-~~lG~l~~i~i~~d~~g~~~~W~~~~V~V~~~~~~~~~~F~~~~Wl~~~~~dg~~~r~~~ 118 (120)
T cd01756 49 GQTDKFTVE--A-VDLGKLKKIRIGHDNSGLGAGWFLDKVEIREPGTGDEYTFPCNRWLDKDEDDGQIVRELY 118 (120)
T ss_pred CCeEEEEEE--e-cCCCCeEEEEEEECCCCCCCCcEEeEEEEEECCCceEEEEEeCCccCCCCCCCEEEEEEE
Confidence 345678888 3 799999999998753 578999999998766667899999999987653 33456664
No 12
>cd01757 PLAT_RAB6IP1 PLAT/LH2 domain present in RAB6 interacting protein 1 (Rab6IP1)_like family. PLAT/LH2 domains consists of an eight stranded beta-barrel. In RabIP1 this domain may participate in lipid-mediated modulation of Rab6IP1's function via it's generally proposed function of mediating interaction with lipids or membrane bound proteins.
Probab=97.66 E-value=0.00014 Score=69.54 Aligned_cols=49 Identities=12% Similarity=0.292 Sum_probs=42.2
Q ss_pred CCCCCCceeEEeecC---CCCceeEeEEEEeecCCCceEEEeecccccCCCC
Q 002839 120 DEDIGVPGAFLIRNN---HHSEFYLKTLTLEDVPGEGRVHFVCNSWVYPAKD 168 (874)
Q Consensus 120 ~~~~G~pgai~v~n~---~~~e~fl~~i~l~~~p~~~~~~F~c~sWv~~~~~ 168 (874)
+.++|+.-.|.|... ....|||+.|+|++.+.+..++||||+|+...+.
T Consensus 49 ~~~LG~L~~irIwHDnsG~~~~Wfl~~V~V~d~~t~~~~~FpC~rWLa~~~~ 100 (114)
T cd01757 49 CQNLGKLTTVQIGHDNSGLLAKWLVEYVMVRNEITGHTYKFPCGRWLGEGVD 100 (114)
T ss_pred cCCcCCcEEEEEEECCCCCCCCeeeeEEEEEeCCCCCEEEEecCceecCCCC
Confidence 499999999999865 3789999999999878788899999999986543
No 13
>cd01752 PLAT_polycystin PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological functions remain poorly defined. In human, mutations in polycystin-1 (PKD1) and polycystin-2 (PKD2) have been shown to be the cause for autosomal dominant polycystic kidney disease (ADPKD). The generally proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=97.50 E-value=0.00039 Score=66.77 Aligned_cols=64 Identities=19% Similarity=0.402 Sum_probs=49.4
Q ss_pred ceEEEEEeecCCCCCCceeEEeecC---CCCceeEeEEEEeecCCCceEEEeecccccCCCC-CCcceee
Q 002839 110 ESAFNVTFEWDEDIGVPGAFLIRNN---HHSEFYLKTLTLEDVPGEGRVHFVCNSWVYPAKD-YNTDRIF 175 (874)
Q Consensus 110 ~~~y~v~f~~~~~~G~pgai~v~n~---~~~e~fl~~i~l~~~p~~~~~~F~c~sWv~~~~~-~~~~r~f 175 (874)
+.+|.+. .+.++|++-.|.|... ....|||++|+|.....+....||||+|+...+. -...|+|
T Consensus 50 ~~~f~i~--~~~dlG~l~~i~l~hd~~g~~~~W~l~~V~V~~~~t~~~~~F~~~rWl~~~~~d~~~~r~~ 117 (120)
T cd01752 50 VDSFLLT--TPFPLGELQSIRLWHDNSGLSPSWYLSRVIVRDLQTGKKWFFLCNDWLSVEEGDGTVERTF 117 (120)
T ss_pred eeEEEec--CccCCCCccEEEEEECCCCCCCCeEEEEEEEEECCCCcEEEEEeCcEECCcCCCCEEEEEE
Confidence 4567666 5789999999999754 3789999999998655567899999999987643 3345655
No 14
>cd01754 PLAT_plant_stress PLAT/LH2 domain of plant-specific single domain protein family with unknown function. Many of its members are stress induced. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=97.45 E-value=0.00029 Score=68.90 Aligned_cols=59 Identities=10% Similarity=0.162 Sum_probs=47.2
Q ss_pred CCceEEEEEeecCCCCCCceeEEeecC---CCCceeEeEEEEeecCC---CceEEEeecccccCCCC
Q 002839 108 AGESAFNVTFEWDEDIGVPGAFLIRNN---HHSEFYLKTLTLEDVPG---EGRVHFVCNSWVYPAKD 168 (874)
Q Consensus 108 ~~~~~y~v~f~~~~~~G~pgai~v~n~---~~~e~fl~~i~l~~~p~---~~~~~F~c~sWv~~~~~ 168 (874)
..+++|.|+ .+.++|++-.|.|... ....|||++|+|.+... +..++||||+|+...+.
T Consensus 55 G~~d~F~v~--~~~~lG~l~~irI~HDn~G~~p~W~l~~V~V~d~~~~~~~~~~~F~c~rWLa~d~~ 119 (129)
T cd01754 55 GNLDRFSGR--GPCLPSPPCWMNLTSDGTGNHPGWYVNYVEVTQAGQHAPCMQHLFAVEQWLATDES 119 (129)
T ss_pred CCccEEEEE--eccCCCCeEEEEEEECCCCCCCCcccCEEEEEeCCCCCcCcEEEEEecEeccCCCC
Confidence 346789888 5788999999999864 47899999999986543 24799999999976554
No 15
>cd01755 PLAT_lipase PLAT/ LH2 domain present in connection with a lipase domain. This family contains two major subgroups, the lipoprotein lipase (LPL) and the pancreatic triglyceride lipase. LPL is a key enzyme in catabolism of plasma lipoprotein triglycerides (TGs). The central role of triglyceride lipases is in energy production. In general, PLAT/LH2 domain's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=33.30 E-value=1.5e+02 Score=28.72 Aligned_cols=49 Identities=12% Similarity=0.135 Sum_probs=35.0
Q ss_pred ceEEEEEeecCCCCCCceeEEeec--CC--------CCceeEeEEEEeecCCCceEEEeecc
Q 002839 110 ESAFNVTFEWDEDIGVPGAFLIRN--NH--------HSEFYLKTLTLEDVPGEGRVHFVCNS 161 (874)
Q Consensus 110 ~~~y~v~f~~~~~~G~pgai~v~n--~~--------~~e~fl~~i~l~~~p~~~~~~F~c~s 161 (874)
+.+|-|+ .+.++|..-.|.++- .- ...||++.|+|+...+ +....-|.+
T Consensus 47 ~~sfli~--t~~~lG~l~~v~~~~dn~~~~~~~~~~~p~~~~~~I~Vq~get-~~~~~FC~~ 105 (120)
T cd01755 47 TYSFLID--TEVDIGDLLKVKFKWENNVINSNSGETLPKLGARKIRVKSGET-QKKFTFCSQ 105 (120)
T ss_pred EEEEEEE--cCCCccceEEEEEEEcCCCcccccccCCCcEEEEEEEEEECCC-CCEEEEECC
Confidence 4455554 689999998888862 21 4689999999987765 444456776
No 16
>KOG2080 consensus Uncharacterized conserved protein, contains DENN and RUN domains [Signal transduction mechanisms]
Probab=28.26 E-value=26 Score=43.91 Aligned_cols=48 Identities=15% Similarity=0.425 Sum_probs=34.5
Q ss_pred CCCCCceeEEeecC---CCCceeEeEEEEeecCCCceEEEeecccccCCCC
Q 002839 121 EDIGVPGAFLIRNN---HHSEFYLKTLTLEDVPGEGRVHFVCNSWVYPAKD 168 (874)
Q Consensus 121 ~~~G~pgai~v~n~---~~~e~fl~~i~l~~~p~~~~~~F~c~sWv~~~~~ 168 (874)
.++|..-.+.|-.. ....||++.|.|..-=.|.++.|||++|.-+..+
T Consensus 1020 kNLG~LtT~rIGHdnS~~~~kW~vEyV~vRNEiTG~TYKFPCGrw~G~ged 1070 (1295)
T KOG2080|consen 1020 KNLGILSTLRIGHQQSEKPVQWFLEYVLVRNEITGQTYKFPCGRWFGNGED 1070 (1295)
T ss_pred cccceeeeEEecccCCCcchHHHHHHhhhhceeccceeccccccccCCccc
Confidence 78888777666432 3567999999774322368999999999866544
No 17
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=26.87 E-value=45 Score=36.11 Aligned_cols=24 Identities=29% Similarity=0.805 Sum_probs=20.4
Q ss_pred HHHHHHhchhhcCCCccccCChHHHHHHHH
Q 002839 658 KKWVQDYCYFYYKNDDMVKEDSELQSWWKE 687 (874)
Q Consensus 658 ~~fV~~yv~~YY~~D~~V~~D~ELQaW~~E 687 (874)
.+||..||..|| ..+.|+..|+++
T Consensus 178 ~~~Ve~YIKAyY------l~e~e~~~W~~~ 201 (234)
T PF10474_consen 178 REYVENYIKAYY------LPEEELEEWIRT 201 (234)
T ss_pred HHHHHHHHHHHc------CCHHHHHHHHHh
Confidence 479999999999 345689999986
No 18
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=24.83 E-value=1.1e+02 Score=23.62 Aligned_cols=31 Identities=35% Similarity=0.622 Sum_probs=20.9
Q ss_pred CChHHHHHHHHHHhccCCCCCCCCCCCCCCChHHHHHHHh
Q 002839 677 EDSELQSWWKELREEGHGDKKDEPWWPKMQNREELIDSCT 716 (874)
Q Consensus 677 ~D~ELQaW~~Ei~~~G~gd~kd~~~~P~l~T~~eLv~~lT 716 (874)
.+.+|++|..+ ||-... +...|+++|++.+-
T Consensus 5 s~~~L~~wL~~-----~gi~~~----~~~~~rd~Ll~~~k 35 (38)
T PF10281_consen 5 SDSDLKSWLKS-----HGIPVP----KSAKTRDELLKLAK 35 (38)
T ss_pred CHHHHHHHHHH-----cCCCCC----CCCCCHHHHHHHHH
Confidence 46899999987 442221 12369999998763
No 19
>PF06232 ATS3: Embryo-specific protein 3, (ATS3); InterPro: IPR010417 This is a family of plant seed-specific proteins identified in Arabidopsis thaliana (Mouse-ear cress). ATS3 is expressed in a pattern similar to the Arabidopsis seed storage protein genes [].
Probab=24.55 E-value=4.1e+02 Score=26.42 Aligned_cols=53 Identities=13% Similarity=0.123 Sum_probs=37.9
Q ss_pred ceEEEEEeecCCCCCCceeEEeecCCCCceeEeEEEEeecCCCceEEEeecccccCC
Q 002839 110 ESAFNVTFEWDEDIGVPGAFLIRNNHHSEFYLKTLTLEDVPGEGRVHFVCNSWVYPA 166 (874)
Q Consensus 110 ~~~y~v~f~~~~~~G~pgai~v~n~~~~e~fl~~i~l~~~p~~~~~~F~c~sWv~~~ 166 (874)
.++|+|+ -+. ++.+=-+.++..-.+.|+.++|+|.+ ....+++|.-|+||-..
T Consensus 65 ~DtF~v~--G~C-~~~IC~lyL~r~G~dGW~Pe~V~Iy~-~~~~~~~F~~~~~lp~~ 117 (125)
T PF06232_consen 65 TDTFQVT--GPC-LYQICYLYLYRSGSDGWKPEWVQIYG-SGSKPVTFYFNTFLPNG 117 (125)
T ss_pred cceeEee--ccc-CCcccEEEEEEccCCCCEeCeEEEEE-cCCCCeEEECCCcCCCC
Confidence 4678876 233 34555556665557899999999975 33578999999999663
Done!