Query 002841
Match_columns 874
No_of_seqs 521 out of 2662
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 03:43:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002841.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002841hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b3f_X DNA-binding protein smu 100.0 1.5E-82 5E-87 765.8 48.1 550 236-814 3-636 (646)
2 2wjy_A Regulator of nonsense t 100.0 1.1E-77 3.6E-82 732.2 40.2 637 148-821 77-793 (800)
3 2xzl_A ATP-dependent helicase 100.0 9.3E-76 3.2E-80 716.1 41.7 631 148-817 82-791 (802)
4 2gk6_A Regulator of nonsense t 100.0 1.7E-73 5.7E-78 683.4 49.6 558 230-819 2-615 (624)
5 3lfu_A DNA helicase II; SF1 he 100.0 3.2E-30 1.1E-34 310.5 21.1 288 389-715 8-362 (647)
6 3e1s_A Exodeoxyribonuclease V, 100.0 1.7E-28 5.8E-33 289.8 18.3 291 384-793 183-544 (574)
7 1pjr_A PCRA; DNA repair, DNA r 100.0 1.3E-28 4.6E-33 299.6 14.6 288 389-716 10-367 (724)
8 3upu_A ATP-dependent DNA helic 99.9 1.5E-27 5.1E-32 275.7 16.5 187 389-630 24-212 (459)
9 1uaa_A REP helicase, protein ( 99.9 3.1E-27 1.1E-31 285.8 13.2 283 390-710 2-352 (673)
10 1w36_D RECD, exodeoxyribonucle 99.9 9.8E-25 3.4E-29 260.0 19.7 205 392-628 151-374 (608)
11 3u4q_A ATP-dependent helicase/ 99.9 4.1E-22 1.4E-26 255.1 12.8 171 532-710 400-592 (1232)
12 3vkw_A Replicase large subunit 99.9 3.9E-21 1.3E-25 216.8 17.7 274 409-808 162-435 (446)
13 1w36_B RECB, exodeoxyribonucle 99.5 3.3E-14 1.1E-18 181.5 18.1 181 532-731 377-582 (1180)
14 3dmn_A Putative DNA helicase; 99.5 1.8E-14 6.2E-19 144.2 8.9 140 612-790 2-154 (174)
15 3u4q_B ATP-dependent helicase/ 99.3 7.3E-12 2.5E-16 160.1 15.3 162 534-732 203-375 (1166)
16 3b6e_A Interferon-induced heli 98.8 1.7E-08 5.7E-13 103.0 9.9 133 389-546 32-176 (216)
17 1rif_A DAR protein, DNA helica 98.8 6.2E-08 2.1E-12 103.9 14.4 135 390-554 113-247 (282)
18 2fz4_A DNA repair protein RAD2 98.7 1.4E-07 4.9E-12 98.7 15.6 140 388-571 91-230 (237)
19 2gxq_A Heat resistant RNA depe 98.7 7.9E-08 2.7E-12 97.5 13.2 128 389-542 22-154 (207)
20 1qde_A EIF4A, translation init 98.7 7.3E-08 2.5E-12 99.3 12.7 129 389-542 35-165 (224)
21 2pl3_A Probable ATP-dependent 98.7 3.9E-08 1.3E-12 102.3 10.7 130 389-543 46-182 (236)
22 3iuy_A Probable ATP-dependent 98.7 1.3E-07 4.3E-12 97.9 13.3 129 389-542 41-177 (228)
23 1vec_A ATP-dependent RNA helic 98.6 2.2E-07 7.4E-12 94.3 13.5 135 389-546 24-160 (206)
24 1t6n_A Probable ATP-dependent 98.6 1.4E-07 4.8E-12 96.9 11.7 131 390-544 36-170 (220)
25 1hv8_A Putative ATP-dependent 98.6 1E-07 3.5E-12 104.9 10.8 131 389-543 27-158 (367)
26 3pey_A ATP-dependent RNA helic 98.6 4.1E-07 1.4E-11 101.2 14.8 128 389-542 26-155 (395)
27 3dkp_A Probable ATP-dependent 98.6 3.8E-07 1.3E-11 95.4 12.8 132 389-543 50-186 (245)
28 2oca_A DAR protein, ATP-depend 98.5 5.8E-07 2E-11 104.4 15.1 151 389-569 112-262 (510)
29 3bor_A Human initiation factor 98.5 2.8E-07 9.6E-12 96.1 10.8 129 389-542 51-183 (237)
30 3fht_A ATP-dependent RNA helic 98.5 9.9E-07 3.4E-11 98.9 16.0 130 389-542 46-178 (412)
31 2oxc_A Probable ATP-dependent 98.5 2.2E-07 7.5E-12 96.4 9.4 130 390-543 46-177 (230)
32 3ber_A Probable ATP-dependent 98.5 4E-07 1.4E-11 95.8 11.6 130 389-542 64-196 (249)
33 3ly5_A ATP-dependent RNA helic 98.5 3.5E-07 1.2E-11 97.1 10.9 129 390-542 76-211 (262)
34 1wrb_A DJVLGB; RNA helicase, D 98.5 1.2E-06 4.3E-11 91.9 14.2 130 389-542 44-184 (253)
35 3fe2_A Probable ATP-dependent 98.5 4.7E-07 1.6E-11 94.7 10.7 130 389-542 50-186 (242)
36 1q0u_A Bstdead; DEAD protein, 98.4 1.9E-07 6.6E-12 95.9 7.2 132 389-542 25-160 (219)
37 3h1t_A Type I site-specific re 98.4 6E-07 2.1E-11 106.5 12.2 150 389-571 177-343 (590)
38 1wp9_A ATP-dependent RNA helic 98.4 1.3E-06 4.4E-11 99.4 14.1 131 389-546 8-139 (494)
39 3fmo_B ATP-dependent RNA helic 98.4 1.6E-06 5.3E-11 94.1 14.0 130 389-542 113-245 (300)
40 1s2m_A Putative ATP-dependent 98.4 1.2E-06 4.1E-11 98.0 13.4 135 390-548 43-179 (400)
41 2z0m_A 337AA long hypothetical 98.4 1.1E-06 3.9E-11 95.4 11.8 124 389-542 15-139 (337)
42 3eiq_A Eukaryotic initiation f 98.4 1.2E-06 4E-11 98.4 12.1 132 389-543 61-194 (414)
43 3fmp_B ATP-dependent RNA helic 98.4 1.7E-06 6E-11 99.6 13.7 130 389-542 113-245 (479)
44 2fwr_A DNA repair protein RAD2 98.4 2.9E-06 1E-10 97.5 15.2 138 388-570 91-229 (472)
45 1xti_A Probable ATP-dependent 98.4 1.4E-06 4.7E-11 97.0 11.8 133 390-546 30-166 (391)
46 4a2p_A RIG-I, retinoic acid in 98.3 1.9E-06 6.5E-11 100.6 13.1 134 389-546 6-144 (556)
47 3oiy_A Reverse gyrase helicase 98.3 1E-06 3.6E-11 99.4 10.5 126 390-541 21-148 (414)
48 1fuu_A Yeast initiation factor 98.3 1.2E-06 4.1E-11 97.5 10.8 130 389-543 42-173 (394)
49 2j0s_A ATP-dependent RNA helic 98.3 2.7E-06 9.3E-11 95.5 13.2 132 390-545 59-192 (410)
50 3fho_A ATP-dependent RNA helic 98.3 1.1E-06 3.7E-11 102.4 9.9 129 390-544 141-271 (508)
51 3tbk_A RIG-I helicase domain; 98.3 1.4E-06 4.7E-11 101.6 10.8 134 390-547 4-142 (555)
52 3llm_A ATP-dependent RNA helic 98.3 3.6E-06 1.2E-10 87.6 12.0 124 390-543 61-187 (235)
53 2va8_A SSO2462, SKI2-type heli 98.3 2.6E-06 9E-11 103.3 12.0 126 389-543 29-156 (715)
54 2i4i_A ATP-dependent RNA helic 98.3 5.1E-06 1.7E-10 93.3 13.5 130 389-542 36-185 (417)
55 2p6r_A Afuhel308 helicase; pro 98.2 2.4E-06 8.2E-11 103.5 10.2 123 390-543 25-149 (702)
56 2zj8_A DNA helicase, putative 98.2 5.6E-06 1.9E-10 100.5 13.4 124 390-542 23-148 (720)
57 2db3_A ATP-dependent RNA helic 98.2 5.1E-06 1.7E-10 94.7 10.9 131 389-543 77-214 (434)
58 4gl2_A Interferon-induced heli 98.2 2.1E-06 7.3E-11 103.7 8.2 131 389-544 6-148 (699)
59 1z63_A Helicase of the SNF2/RA 98.1 9.7E-06 3.3E-10 93.8 13.2 152 387-571 34-189 (500)
60 4a2q_A RIG-I, retinoic acid in 98.1 6.8E-06 2.3E-10 101.0 12.2 135 389-547 247-386 (797)
61 3l9o_A ATP-dependent RNA helic 98.1 1E-05 3.6E-10 102.2 13.9 121 389-546 183-304 (1108)
62 2ykg_A Probable ATP-dependent 98.1 1.1E-05 3.8E-10 97.3 13.6 134 389-546 12-150 (696)
63 4a4z_A Antiviral helicase SKI2 98.1 1.4E-05 4.9E-10 100.0 14.0 123 388-545 37-160 (997)
64 1gm5_A RECG; helicase, replica 98.1 1.7E-05 5.8E-10 96.5 13.4 130 390-545 368-502 (780)
65 3sqw_A ATP-dependent RNA helic 98.1 8.6E-06 2.9E-10 96.3 10.6 136 389-543 42-186 (579)
66 2l8b_A Protein TRAI, DNA helic 98.1 6E-06 2E-10 81.5 7.5 128 392-574 36-163 (189)
67 3i5x_A ATP-dependent RNA helic 98.0 1.2E-05 4.2E-10 94.4 11.1 136 389-543 93-237 (563)
68 2xgj_A ATP-dependent RNA helic 98.0 2.2E-05 7.5E-10 98.4 13.9 119 389-544 85-204 (1010)
69 2zpa_A Uncharacterized protein 98.0 1.6E-05 5.4E-10 94.1 11.8 162 386-629 171-334 (671)
70 4ddu_A Reverse gyrase; topoiso 98.0 1.5E-05 5.1E-10 100.8 12.2 126 390-541 78-205 (1104)
71 4a2w_A RIG-I, retinoic acid in 98.0 7.4E-06 2.5E-10 102.3 9.3 135 389-547 247-386 (936)
72 2eyq_A TRCF, transcription-rep 98.0 2.6E-05 8.8E-10 99.2 14.2 143 388-556 601-748 (1151)
73 2b8t_A Thymidine kinase; deoxy 98.0 4.1E-06 1.4E-10 86.6 5.4 37 409-447 13-49 (223)
74 3dmq_A RNA polymerase-associat 97.8 3.1E-05 1.1E-09 96.9 10.3 160 388-571 151-318 (968)
75 2orw_A Thymidine kinase; TMTK, 97.8 7E-06 2.4E-10 82.4 2.9 36 410-447 5-40 (184)
76 4f92_B U5 small nuclear ribonu 97.8 4.1E-05 1.4E-09 100.6 10.3 130 389-543 925-1057(1724)
77 1xx6_A Thymidine kinase; NESG, 97.8 2.7E-05 9.2E-10 78.6 6.7 36 410-447 10-45 (191)
78 2j9r_A Thymidine kinase; TK1, 97.7 4.9E-05 1.7E-09 77.7 7.8 37 410-448 30-66 (214)
79 2xau_A PRE-mRNA-splicing facto 97.7 8.1E-05 2.8E-09 90.8 11.0 123 392-542 95-218 (773)
80 2w00_A HSDR, R.ECOR124I; ATP-b 97.6 0.00012 4E-09 91.6 11.1 153 390-571 271-440 (1038)
81 1z3i_X Similar to RAD54-like; 97.6 0.00017 5.9E-09 86.3 12.1 167 388-571 53-232 (644)
82 2jlq_A Serine protease subunit 97.6 0.0001 3.5E-09 84.4 9.5 58 398-459 11-69 (451)
83 1w4r_A Thymidine kinase; type 97.6 4.1E-05 1.4E-09 77.0 5.4 36 410-447 22-57 (195)
84 1gku_B Reverse gyrase, TOP-RG; 97.6 0.00012 4.2E-09 92.3 9.8 126 391-542 58-185 (1054)
85 3o8b_A HCV NS3 protease/helica 97.5 0.00024 8.1E-09 84.5 10.8 102 411-551 235-336 (666)
86 3mwy_W Chromo domain-containin 97.5 0.00026 8.8E-09 87.0 11.2 170 388-571 234-407 (800)
87 4f92_B U5 small nuclear ribonu 97.5 0.0004 1.4E-08 91.3 12.9 127 389-541 78-216 (1724)
88 2chg_A Replication factor C sm 97.5 0.00034 1.2E-08 70.4 9.7 42 392-433 22-63 (226)
89 3e2i_A Thymidine kinase; Zn-bi 97.4 0.00016 5.3E-09 73.8 6.7 37 410-448 30-66 (219)
90 2v1x_A ATP-dependent DNA helic 97.3 0.00034 1.1E-08 82.8 9.1 64 389-460 43-106 (591)
91 2z83_A Helicase/nucleoside tri 97.3 0.00056 1.9E-08 78.4 10.6 48 410-459 23-71 (459)
92 1oyw_A RECQ helicase, ATP-depe 97.2 0.00032 1.1E-08 81.8 7.4 124 390-542 25-149 (523)
93 1l8q_A Chromosomal replication 97.2 0.0025 8.7E-08 69.1 13.3 53 392-446 19-73 (324)
94 2z4s_A Chromosomal replication 97.2 0.0017 5.8E-08 74.0 12.1 56 392-447 113-169 (440)
95 2whx_A Serine protease/ntpase/ 97.1 0.00048 1.6E-08 81.9 7.5 58 398-460 179-237 (618)
96 1a5t_A Delta prime, HOLB; zinc 97.1 0.00091 3.1E-08 73.2 9.2 36 398-433 13-49 (334)
97 2orv_A Thymidine kinase; TP4A 97.1 0.00067 2.3E-08 69.9 7.1 36 410-447 21-56 (234)
98 2v6i_A RNA helicase; membrane, 97.1 0.0027 9.2E-08 72.1 12.9 48 410-459 4-52 (431)
99 2gno_A DNA polymerase III, gam 97.1 0.00054 1.8E-08 74.2 6.7 48 531-579 81-132 (305)
100 3crv_A XPD/RAD3 related DNA he 97.1 0.0011 3.8E-08 77.7 9.9 64 390-460 3-69 (551)
101 1iqp_A RFCS; clamp loader, ext 97.1 0.001 3.5E-08 71.7 8.7 42 392-433 30-71 (327)
102 2wv9_A Flavivirin protease NS2 97.0 0.00096 3.3E-08 80.0 8.9 50 410-460 243-292 (673)
103 2vl7_A XPD; helicase, unknown 97.0 0.0018 6.2E-08 75.7 10.8 64 390-460 7-73 (540)
104 2chq_A Replication factor C sm 96.9 0.0018 6.1E-08 69.5 8.9 42 392-433 22-63 (319)
105 1sxj_B Activator 1 37 kDa subu 96.9 0.0014 4.8E-08 70.5 8.0 42 392-433 26-67 (323)
106 1yks_A Genome polyprotein [con 96.9 0.0024 8.2E-08 72.7 10.2 50 410-460 10-59 (440)
107 3u61_B DNA polymerase accessor 96.9 0.0034 1.2E-07 68.0 10.7 38 391-428 30-68 (324)
108 1g5t_A COB(I)alamin adenosyltr 96.7 0.0068 2.3E-07 60.9 10.2 124 409-569 29-162 (196)
109 3bos_A Putative DNA replicatio 96.5 0.0058 2E-07 62.4 8.7 54 390-445 34-87 (242)
110 3pvs_A Replication-associated 96.4 0.0042 1.4E-07 70.8 7.6 30 397-426 39-68 (447)
111 2o0j_A Terminase, DNA packagin 96.4 0.028 9.6E-07 62.5 14.0 68 390-460 163-230 (385)
112 3kl4_A SRP54, signal recogniti 96.3 0.0084 2.9E-07 67.8 9.3 34 410-445 99-132 (433)
113 1jbk_A CLPB protein; beta barr 96.3 0.0038 1.3E-07 61.0 5.5 42 392-433 27-68 (195)
114 1w36_B RECB, exodeoxyribonucle 96.2 0.00084 2.9E-08 85.8 0.1 64 727-790 735-819 (1180)
115 3rc3_A ATP-dependent RNA helic 96.2 0.01 3.4E-07 71.1 9.3 45 410-460 157-201 (677)
116 3cpe_A Terminase, DNA packagin 96.1 0.044 1.5E-06 64.7 14.7 69 389-460 162-230 (592)
117 1jr3_A DNA polymerase III subu 96.1 0.014 4.9E-07 64.0 9.7 41 392-432 21-62 (373)
118 2e6j_A Hydin protein; PAPD, st 96.0 0.0047 1.6E-07 56.1 4.5 79 47-152 17-95 (112)
119 2p65_A Hypothetical protein PF 96.0 0.0046 1.6E-07 60.3 4.6 42 392-433 27-68 (187)
120 2ys4_A Hydrocephalus-inducing 95.9 0.0072 2.5E-07 56.0 5.3 77 44-152 29-105 (122)
121 3ec2_A DNA replication protein 95.9 0.0082 2.8E-07 59.0 6.0 53 392-445 16-74 (180)
122 3dm5_A SRP54, signal recogniti 95.8 0.014 4.7E-07 66.1 7.8 34 410-445 102-135 (443)
123 3te6_A Regulatory protein SIR3 95.8 0.0045 1.6E-07 67.2 3.7 34 401-434 38-71 (318)
124 3syl_A Protein CBBX; photosynt 95.6 0.016 5.5E-07 62.0 7.2 25 409-433 68-92 (309)
125 1sxj_C Activator 1 40 kDa subu 95.3 0.017 5.7E-07 63.1 6.3 42 392-433 30-71 (340)
126 2w58_A DNAI, primosome compone 95.3 0.021 7.1E-07 57.1 6.4 35 409-445 55-89 (202)
127 1tue_A Replication protein E1; 95.3 0.01 3.4E-07 60.1 3.9 36 396-431 45-81 (212)
128 3h4m_A Proteasome-activating n 95.3 0.015 5.1E-07 61.5 5.5 37 391-427 21-70 (285)
129 1ofh_A ATP-dependent HSL prote 95.2 0.017 5.9E-07 61.5 5.8 21 409-429 51-71 (310)
130 1tf5_A Preprotein translocase 95.2 0.054 1.8E-06 65.5 10.4 122 390-541 83-212 (844)
131 1njg_A DNA polymerase III subu 95.1 0.021 7.1E-07 57.7 5.7 41 392-432 28-69 (250)
132 2qz4_A Paraplegin; AAA+, SPG7, 95.0 0.019 6.6E-07 59.6 5.3 20 409-428 40-59 (262)
133 2qby_B CDC6 homolog 3, cell di 95.0 0.035 1.2E-06 61.1 7.5 43 392-434 25-71 (384)
134 1sxj_D Activator 1 41 kDa subu 95.0 0.016 5.4E-07 63.1 4.6 41 392-432 42-82 (353)
135 2kjq_A DNAA-related protein; s 94.9 0.027 9.2E-07 54.0 5.5 42 387-432 19-60 (149)
136 3n70_A Transport activator; si 94.9 0.023 7.9E-07 53.9 4.9 18 409-426 25-42 (145)
137 3eie_A Vacuolar protein sortin 94.8 0.032 1.1E-06 60.4 6.4 38 390-427 21-70 (322)
138 3co5_A Putative two-component 94.8 0.014 4.8E-07 55.3 3.1 17 409-425 28-44 (143)
139 2fsf_A Preprotein translocase 94.7 0.053 1.8E-06 65.4 8.6 123 389-541 73-203 (853)
140 1sxj_E Activator 1 40 kDa subu 94.6 0.025 8.5E-07 61.7 5.0 43 392-434 19-62 (354)
141 2v1u_A Cell division control p 94.5 0.037 1.3E-06 60.7 6.3 43 392-434 24-70 (387)
142 3io5_A Recombination and repai 94.5 0.023 7.8E-07 61.3 4.3 49 410-458 30-78 (333)
143 2dr3_A UPF0273 protein PH0284; 94.5 0.035 1.2E-06 56.9 5.7 49 409-460 24-72 (247)
144 4a15_A XPD helicase, ATP-depen 94.5 0.054 1.8E-06 64.3 7.9 66 392-460 5-73 (620)
145 3b9p_A CG5977-PA, isoform A; A 94.4 0.03 1E-06 59.5 5.1 36 392-427 26-73 (297)
146 2qby_A CDC6 homolog 1, cell di 94.3 0.057 2E-06 59.1 7.2 43 392-434 25-71 (386)
147 1nkt_A Preprotein translocase 94.3 0.079 2.7E-06 64.2 8.7 122 390-541 111-240 (922)
148 3cf0_A Transitional endoplasmi 94.2 0.04 1.4E-06 59.1 5.4 18 410-427 51-68 (301)
149 2r62_A Cell division protease 94.2 0.028 9.7E-07 58.8 4.1 20 410-429 46-65 (268)
150 4b4t_M 26S protease regulatory 94.2 0.023 7.9E-07 64.2 3.5 46 385-431 179-237 (434)
151 1c4o_A DNA nucleotide excision 94.1 0.053 1.8E-06 64.9 6.9 66 390-460 8-75 (664)
152 1xwi_A SKD1 protein; VPS4B, AA 94.1 0.045 1.5E-06 59.4 5.7 20 410-429 47-66 (322)
153 3uk6_A RUVB-like 2; hexameric 94.1 0.036 1.2E-06 60.8 5.1 22 410-431 72-93 (368)
154 2qgz_A Helicase loader, putati 94.1 0.037 1.3E-06 59.7 4.9 35 409-445 153-188 (308)
155 2ipc_A Preprotein translocase 94.1 0.082 2.8E-06 64.1 8.1 64 390-460 79-142 (997)
156 3pfi_A Holliday junction ATP-d 94.0 0.047 1.6E-06 59.2 5.6 37 392-428 34-75 (338)
157 4b4t_K 26S protease regulatory 94.0 0.027 9.1E-07 63.6 3.5 18 411-428 209-226 (428)
158 2qsv_A Uncharacterized protein 94.0 0.17 5.7E-06 51.8 9.2 70 56-151 130-204 (220)
159 3t15_A Ribulose bisphosphate c 93.9 0.027 9.2E-07 60.3 3.2 20 411-430 39-58 (293)
160 4b4t_J 26S protease regulatory 93.8 0.029 9.8E-07 62.6 3.4 17 411-427 185-201 (405)
161 4b4t_L 26S protease subunit RP 93.8 0.029 9.9E-07 63.4 3.5 17 411-427 218-234 (437)
162 1lv7_A FTSH; alpha/beta domain 93.8 0.046 1.6E-06 56.8 4.7 19 410-428 47-65 (257)
163 2r8r_A Sensor protein; KDPD, P 93.7 0.055 1.9E-06 55.5 5.1 33 411-445 9-41 (228)
164 1d2n_A N-ethylmaleimide-sensit 93.7 0.041 1.4E-06 57.8 4.3 22 409-430 65-86 (272)
165 1hqc_A RUVB; extended AAA-ATPa 93.7 0.054 1.9E-06 58.1 5.3 38 392-429 17-59 (324)
166 2qp9_X Vacuolar protein sortin 93.6 0.055 1.9E-06 59.5 5.2 21 410-430 86-106 (355)
167 1g8p_A Magnesium-chelatase 38 93.6 0.034 1.2E-06 60.4 3.5 19 409-427 46-64 (350)
168 1sxj_A Activator 1 95 kDa subu 93.6 0.076 2.6E-06 61.5 6.6 41 391-431 43-100 (516)
169 3pxg_A Negative regulator of g 93.6 0.059 2E-06 61.7 5.6 41 392-433 185-225 (468)
170 3hws_A ATP-dependent CLP prote 93.5 0.059 2E-06 59.3 5.4 24 409-433 52-75 (363)
171 1fnn_A CDC6P, cell division co 93.5 0.069 2.3E-06 58.7 5.8 40 392-431 22-67 (389)
172 3d8b_A Fidgetin-like protein 1 93.5 0.057 2E-06 59.4 5.1 37 392-428 89-137 (357)
173 4b4t_I 26S protease regulatory 93.4 0.038 1.3E-06 62.0 3.5 17 411-427 219-235 (437)
174 2bjv_A PSP operon transcriptio 93.4 0.081 2.8E-06 55.2 5.9 22 409-431 30-51 (265)
175 2qsv_A Uncharacterized protein 93.1 0.36 1.2E-05 49.2 10.0 79 41-151 3-86 (220)
176 2r44_A Uncharacterized protein 93.0 0.051 1.7E-06 58.8 3.7 33 393-427 33-65 (331)
177 2w0m_A SSO2452; RECA, SSPF, un 93.0 0.085 2.9E-06 53.3 5.2 48 409-459 24-71 (235)
178 2zts_A Putative uncharacterize 93.0 0.081 2.8E-06 54.2 5.1 50 409-460 31-80 (251)
179 4b4t_H 26S protease regulatory 92.9 0.043 1.5E-06 62.1 2.9 46 385-431 207-265 (467)
180 2zan_A Vacuolar protein sortin 92.8 0.1 3.4E-06 59.3 5.9 37 392-428 139-187 (444)
181 3vfd_A Spastin; ATPase, microt 92.7 0.094 3.2E-06 58.3 5.5 36 392-427 120-167 (389)
182 2r2a_A Uncharacterized protein 92.7 0.057 2E-06 54.4 3.3 22 410-431 7-28 (199)
183 1in4_A RUVB, holliday junction 92.7 0.088 3E-06 57.3 5.1 40 393-433 31-75 (334)
184 3hr8_A Protein RECA; alpha and 92.7 0.071 2.4E-06 58.6 4.3 47 410-458 63-109 (356)
185 3kb2_A SPBC2 prophage-derived 92.6 0.066 2.3E-06 51.5 3.5 20 410-429 3-22 (173)
186 1um8_A ATP-dependent CLP prote 92.5 0.11 3.8E-06 57.4 5.6 20 409-428 73-92 (376)
187 2zr9_A Protein RECA, recombina 92.3 0.078 2.7E-06 58.2 4.1 48 409-458 62-109 (349)
188 3bh0_A DNAB-like replicative h 92.2 0.12 4.1E-06 55.8 5.4 49 409-460 69-117 (315)
189 4fcw_A Chaperone protein CLPB; 92.2 0.064 2.2E-06 57.2 3.1 23 410-433 49-71 (311)
190 1u0j_A DNA replication protein 92.2 0.12 4.1E-06 54.4 5.0 41 389-429 82-125 (267)
191 1qhx_A CPT, protein (chloramph 92.0 0.069 2.3E-06 51.9 2.8 20 410-429 5-24 (178)
192 2c9o_A RUVB-like 1; hexameric 92.0 0.12 4E-06 59.0 5.1 21 410-430 65-85 (456)
193 3pxi_A Negative regulator of g 91.9 0.12 4.1E-06 62.8 5.4 41 392-433 185-225 (758)
194 3hu3_A Transitional endoplasmi 91.8 0.13 4.6E-06 59.0 5.4 19 409-427 239-257 (489)
195 2x8a_A Nuclear valosin-contain 91.8 0.075 2.6E-06 56.2 3.0 17 411-427 47-63 (274)
196 1vma_A Cell division protein F 91.7 0.14 4.8E-06 55.1 5.1 34 410-445 106-139 (306)
197 1p9r_A General secretion pathw 91.7 0.15 5E-06 57.5 5.3 51 390-443 150-200 (418)
198 1u94_A RECA protein, recombina 91.6 0.11 3.9E-06 57.1 4.3 38 409-448 64-101 (356)
199 1kht_A Adenylate kinase; phosp 91.6 0.1 3.4E-06 51.1 3.5 22 410-431 5-26 (192)
200 1ly1_A Polynucleotide kinase; 91.5 0.093 3.2E-06 50.9 3.2 20 410-429 4-23 (181)
201 1nks_A Adenylate kinase; therm 91.5 0.096 3.3E-06 51.3 3.2 22 410-431 3-24 (194)
202 1ixz_A ATP-dependent metallopr 91.4 0.086 2.9E-06 54.7 3.0 17 411-427 52-68 (254)
203 3trf_A Shikimate kinase, SK; a 91.4 0.11 3.7E-06 50.9 3.5 21 410-430 7-27 (185)
204 2z0h_A DTMP kinase, thymidylat 91.4 0.25 8.6E-06 48.6 6.2 30 411-442 3-32 (197)
205 3iij_A Coilin-interacting nucl 91.4 0.12 4.2E-06 50.4 3.8 21 409-429 12-32 (180)
206 1w36_C RECC, exodeoxyribonucle 91.2 0.087 3E-06 66.8 3.3 81 725-808 656-757 (1122)
207 1qvr_A CLPB protein; coiled co 91.2 0.26 8.8E-06 60.7 7.3 54 393-446 176-234 (854)
208 1xp8_A RECA protein, recombina 91.1 0.13 4.3E-06 56.9 4.1 48 409-458 75-122 (366)
209 2px0_A Flagellar biosynthesis 91.0 0.18 6.1E-06 54.0 5.0 36 410-446 107-142 (296)
210 1ojl_A Transcriptional regulat 91.0 0.16 5.6E-06 54.4 4.7 22 409-431 26-47 (304)
211 2d7d_A Uvrabc system protein B 91.0 0.4 1.4E-05 57.2 8.5 66 390-460 12-79 (661)
212 1r6b_X CLPA protein; AAA+, N-t 91.0 0.18 6.2E-06 61.1 5.6 41 392-432 191-231 (758)
213 1nlf_A Regulatory protein REPA 91.0 0.23 7.7E-06 52.4 5.7 49 409-459 31-88 (279)
214 2rhm_A Putative kinase; P-loop 91.0 0.12 4E-06 50.8 3.3 21 410-430 7-27 (193)
215 3lw7_A Adenylate kinase relate 90.9 0.1 3.5E-06 49.9 2.8 19 410-428 3-21 (179)
216 3sr0_A Adenylate kinase; phosp 90.9 0.13 4.3E-06 52.1 3.5 17 411-427 3-19 (206)
217 1xjc_A MOBB protein homolog; s 90.9 0.2 7E-06 49.0 4.9 39 409-449 5-43 (169)
218 3fb4_A Adenylate kinase; psych 90.8 0.13 4.4E-06 51.7 3.5 19 411-429 3-21 (216)
219 2iyv_A Shikimate kinase, SK; t 90.8 0.15 5E-06 49.9 3.8 20 410-429 4-23 (184)
220 3p32_A Probable GTPase RV1496/ 90.8 0.24 8.2E-06 54.4 5.9 35 410-446 81-115 (355)
221 2yvu_A Probable adenylyl-sulfa 90.8 0.2 6.8E-06 49.1 4.7 33 410-444 15-47 (186)
222 1via_A Shikimate kinase; struc 90.7 0.15 5E-06 49.6 3.6 20 410-429 6-25 (175)
223 2plr_A DTMP kinase, probable t 90.6 0.14 4.8E-06 51.0 3.5 22 410-431 6-27 (213)
224 1kag_A SKI, shikimate kinase I 90.5 0.13 4.5E-06 49.6 3.1 18 410-427 6-23 (173)
225 3vaa_A Shikimate kinase, SK; s 90.5 0.14 4.9E-06 50.9 3.5 21 410-430 27-47 (199)
226 3cm0_A Adenylate kinase; ATP-b 90.5 0.15 5E-06 49.9 3.5 20 410-429 6-25 (186)
227 2v3c_C SRP54, signal recogniti 90.5 0.16 5.5E-06 57.4 4.2 35 410-446 101-135 (432)
228 2cvh_A DNA repair and recombin 90.4 0.16 5.6E-06 50.9 3.8 34 409-447 21-54 (220)
229 3umf_A Adenylate kinase; rossm 90.4 0.15 5.1E-06 52.1 3.5 18 410-427 31-48 (217)
230 3isy_A Bsupi, intracellular pr 90.4 3.8 0.00013 37.5 12.5 82 59-150 16-102 (120)
231 1iy2_A ATP-dependent metallopr 90.3 0.12 4.3E-06 54.3 3.0 21 411-432 76-96 (278)
232 3nbx_X ATPase RAVA; AAA+ ATPas 90.3 0.14 4.7E-06 59.0 3.5 18 409-426 42-59 (500)
233 1zu4_A FTSY; GTPase, signal re 90.3 0.23 7.9E-06 53.8 5.1 34 410-445 107-140 (320)
234 3dl0_A Adenylate kinase; phosp 90.3 0.12 4.3E-06 51.9 2.8 18 411-428 3-20 (216)
235 1cr0_A DNA primase/helicase; R 90.3 0.28 9.7E-06 52.0 5.7 49 409-459 36-84 (296)
236 1tev_A UMP-CMP kinase; ploop, 90.3 0.16 5.4E-06 49.8 3.5 20 410-429 5-24 (196)
237 4eun_A Thermoresistant glucoki 90.2 0.16 5.5E-06 50.6 3.6 21 409-429 30-50 (200)
238 1n0w_A DNA repair protein RAD5 90.2 0.28 9.5E-06 50.0 5.4 40 409-448 25-68 (243)
239 3t61_A Gluconokinase; PSI-biol 90.2 0.17 5.8E-06 50.4 3.6 20 410-429 20-39 (202)
240 1e6c_A Shikimate kinase; phosp 90.1 0.18 6.1E-06 48.6 3.7 20 410-429 4-23 (173)
241 2cdn_A Adenylate kinase; phosp 90.1 0.17 5.7E-06 50.4 3.5 20 410-429 22-41 (201)
242 1zp6_A Hypothetical protein AT 90.0 0.14 4.7E-06 50.4 2.7 18 410-427 11-28 (191)
243 2j37_W Signal recognition part 89.9 0.3 1E-05 56.2 5.9 43 410-454 103-148 (504)
244 1w5s_A Origin recognition comp 89.9 0.2 6.8E-06 55.5 4.4 25 409-433 51-77 (412)
245 3ice_A Transcription terminati 89.9 0.38 1.3E-05 53.3 6.3 63 393-455 159-223 (422)
246 1j8m_F SRP54, signal recogniti 89.9 0.39 1.3E-05 51.3 6.5 35 410-446 100-134 (297)
247 1gvn_B Zeta; postsegregational 89.9 0.14 4.9E-06 54.4 3.0 20 410-429 35-54 (287)
248 2r6a_A DNAB helicase, replicat 89.9 0.3 1E-05 55.5 5.8 49 409-459 204-252 (454)
249 2c95_A Adenylate kinase 1; tra 89.9 0.17 5.7E-06 49.8 3.3 21 409-429 10-30 (196)
250 2fna_A Conserved hypothetical 89.8 0.24 8E-06 53.4 4.7 35 393-431 19-53 (357)
251 1ex7_A Guanylate kinase; subst 89.8 0.18 6.3E-06 50.1 3.5 19 409-427 2-20 (186)
252 1zak_A Adenylate kinase; ATP:A 89.8 0.18 6E-06 51.1 3.4 20 410-429 7-26 (222)
253 2ze6_A Isopentenyl transferase 89.7 0.18 6.1E-06 52.6 3.5 21 410-430 3-23 (253)
254 1qf9_A UMP/CMP kinase, protein 89.7 0.18 6.1E-06 49.3 3.3 19 410-428 8-26 (194)
255 1zuh_A Shikimate kinase; alpha 89.6 0.19 6.7E-06 48.3 3.5 20 410-429 9-28 (168)
256 2jaq_A Deoxyguanosine kinase; 89.6 0.19 6.5E-06 49.7 3.5 19 411-429 3-21 (205)
257 3l0o_A Transcription terminati 89.5 0.42 1.4E-05 52.8 6.3 45 396-441 163-208 (427)
258 2bwj_A Adenylate kinase 5; pho 89.5 0.19 6.3E-06 49.6 3.3 20 410-429 14-33 (199)
259 1y63_A LMAJ004144AAA protein; 89.5 0.19 6.6E-06 49.4 3.3 19 410-428 12-30 (184)
260 1g41_A Heat shock protein HSLU 89.4 0.23 7.9E-06 56.1 4.4 24 409-433 51-74 (444)
261 1aky_A Adenylate kinase; ATP:A 89.4 0.2 6.8E-06 50.7 3.5 20 410-429 6-25 (220)
262 2xxa_A Signal recognition part 89.3 0.3 1E-05 55.2 5.2 36 410-446 102-137 (433)
263 2wwf_A Thymidilate kinase, put 89.2 0.2 6.8E-06 50.0 3.3 23 410-432 12-34 (212)
264 2pbr_A DTMP kinase, thymidylat 89.2 0.22 7.4E-06 48.8 3.5 22 411-432 3-24 (195)
265 1v5w_A DMC1, meiotic recombina 89.2 0.24 8.1E-06 54.1 4.2 50 410-459 124-178 (343)
266 1knq_A Gluconate kinase; ALFA/ 89.1 0.22 7.6E-06 48.2 3.5 19 410-428 10-28 (175)
267 2ehv_A Hypothetical protein PH 89.1 0.46 1.6E-05 48.5 6.1 25 409-433 31-55 (251)
268 3a4m_A L-seryl-tRNA(SEC) kinas 89.1 0.34 1.2E-05 50.5 5.1 33 410-444 6-38 (260)
269 2z43_A DNA repair and recombin 89.0 0.23 7.7E-06 53.8 3.8 50 409-458 108-162 (324)
270 3tlx_A Adenylate kinase 2; str 89.0 0.22 7.4E-06 51.6 3.5 20 410-429 31-50 (243)
271 1e4v_A Adenylate kinase; trans 89.0 0.21 7.1E-06 50.3 3.3 20 411-430 3-22 (214)
272 1nn5_A Similar to deoxythymidy 89.0 0.21 7.1E-06 49.9 3.3 23 410-432 11-33 (215)
273 3uie_A Adenylyl-sulfate kinase 89.0 0.27 9.3E-06 48.9 4.1 41 389-434 10-50 (200)
274 2vli_A Antibiotic resistance p 89.0 0.15 5.3E-06 49.5 2.2 19 410-428 7-25 (183)
275 2pt5_A Shikimate kinase, SK; a 88.9 0.23 8E-06 47.5 3.5 18 411-428 3-20 (168)
276 2bdt_A BH3686; alpha-beta prot 88.9 0.2 6.8E-06 49.3 3.0 20 410-429 4-23 (189)
277 4a1f_A DNAB helicase, replicat 88.9 0.45 1.6E-05 51.8 6.1 49 409-460 47-95 (338)
278 2qor_A Guanylate kinase; phosp 88.8 0.19 6.5E-06 50.2 2.9 20 409-428 13-32 (204)
279 2xb4_A Adenylate kinase; ATP-b 88.8 0.23 7.8E-06 50.5 3.5 20 411-430 3-22 (223)
280 1ye8_A Protein THEP1, hypothet 88.7 0.24 8.4E-06 48.7 3.5 22 411-433 3-24 (178)
281 1ak2_A Adenylate kinase isoenz 88.7 0.24 8.1E-06 50.7 3.5 21 410-430 18-38 (233)
282 2qen_A Walker-type ATPase; unk 88.5 0.32 1.1E-05 52.3 4.6 37 393-431 18-54 (350)
283 2ce7_A Cell division protein F 88.4 0.25 8.7E-06 56.4 3.8 19 410-428 51-69 (476)
284 1zd8_A GTP:AMP phosphotransfer 88.3 0.19 6.7E-06 51.0 2.6 19 410-428 9-27 (227)
285 3be4_A Adenylate kinase; malar 88.2 0.25 8.5E-06 50.0 3.3 20 410-429 7-26 (217)
286 3m6a_A ATP-dependent protease 88.2 0.37 1.3E-05 56.1 5.2 24 409-433 109-132 (543)
287 1ukz_A Uridylate kinase; trans 88.2 0.22 7.6E-06 49.5 2.8 19 410-428 17-35 (203)
288 2wsm_A Hydrogenase expression/ 88.1 0.24 8.1E-06 49.8 3.0 41 392-432 14-54 (221)
289 3tau_A Guanylate kinase, GMP k 88.1 0.27 9.1E-06 49.4 3.4 20 409-428 9-28 (208)
290 1q57_A DNA primase/helicase; d 88.0 0.26 8.9E-06 56.7 3.6 50 409-460 243-292 (503)
291 3bgw_A DNAB-like replicative h 87.9 0.39 1.3E-05 54.4 4.9 49 409-460 198-246 (444)
292 2vhj_A Ntpase P4, P4; non- hyd 87.9 0.27 9.2E-06 53.2 3.3 22 410-431 125-146 (331)
293 1yrb_A ATP(GTP)binding protein 87.7 0.39 1.3E-05 49.6 4.5 34 409-445 15-48 (262)
294 2hf9_A Probable hydrogenase ni 87.6 0.33 1.1E-05 48.9 3.8 42 392-433 22-63 (226)
295 2p5t_B PEZT; postsegregational 87.4 0.21 7E-06 52.0 2.1 19 410-428 34-52 (253)
296 4ag6_A VIRB4 ATPase, type IV s 87.4 0.45 1.5E-05 52.8 5.0 41 409-451 36-76 (392)
297 2v54_A DTMP kinase, thymidylat 87.4 0.23 7.7E-06 49.3 2.3 20 410-429 6-25 (204)
298 2oap_1 GSPE-2, type II secreti 87.4 0.43 1.5E-05 55.1 4.9 36 391-428 245-280 (511)
299 1e9r_A Conjugal transfer prote 87.3 0.62 2.1E-05 52.4 6.1 42 409-452 54-95 (437)
300 3e70_C DPA, signal recognition 87.2 0.5 1.7E-05 51.3 5.1 34 410-445 131-164 (328)
301 2bbw_A Adenylate kinase 4, AK4 87.2 0.33 1.1E-05 50.0 3.5 21 409-429 28-48 (246)
302 1kgd_A CASK, peripheral plasma 87.1 0.3 1E-05 47.8 3.0 20 409-428 6-25 (180)
303 2q6t_A DNAB replication FORK h 87.1 0.6 2.1E-05 52.8 5.9 50 409-460 201-250 (444)
304 3qbt_B Inositol polyphosphate 86.9 2.5 8.6E-05 39.8 9.1 88 41-152 27-124 (140)
305 3jvv_A Twitching mobility prot 86.9 0.67 2.3E-05 50.9 5.9 43 398-442 114-156 (356)
306 1cke_A CK, MSSA, protein (cyti 86.8 0.36 1.2E-05 48.7 3.5 19 410-428 7-25 (227)
307 3tr0_A Guanylate kinase, GMP k 86.8 0.31 1.1E-05 48.2 3.0 18 410-427 9-26 (205)
308 1np6_A Molybdopterin-guanine d 86.8 0.66 2.3E-05 45.5 5.2 36 409-446 7-42 (174)
309 2i1q_A DNA repair and recombin 86.7 0.36 1.2E-05 51.9 3.6 50 410-459 100-164 (322)
310 3b9q_A Chloroplast SRP recepto 86.7 0.57 1.9E-05 50.2 5.1 34 410-445 102-135 (302)
311 2j41_A Guanylate kinase; GMP, 86.6 0.33 1.1E-05 48.1 3.0 18 410-427 8-25 (207)
312 3io3_A DEHA2D07832P; chaperone 86.5 0.66 2.2E-05 50.8 5.6 46 402-447 12-57 (348)
313 1m7g_A Adenylylsulfate kinase; 86.4 0.49 1.7E-05 47.5 4.2 38 390-431 11-48 (211)
314 4gp7_A Metallophosphoesterase; 86.3 0.28 9.6E-06 47.7 2.3 18 410-427 11-28 (171)
315 1jjv_A Dephospho-COA kinase; P 86.3 0.34 1.2E-05 48.2 3.0 17 411-427 5-21 (206)
316 3cf2_A TER ATPase, transitiona 86.2 0.23 8E-06 60.2 1.9 16 411-426 241-256 (806)
317 3a00_A Guanylate kinase, GMP k 86.0 0.38 1.3E-05 47.3 3.1 18 410-427 3-20 (186)
318 1rj9_A FTSY, signal recognitio 86.0 0.6 2E-05 50.1 4.8 35 410-446 104-138 (304)
319 3iqw_A Tail-anchored protein t 85.8 0.55 1.9E-05 51.1 4.5 37 409-447 17-53 (334)
320 2dhr_A FTSH; AAA+ protein, hex 85.8 0.34 1.2E-05 55.7 2.9 21 411-432 67-87 (499)
321 3b85_A Phosphate starvation-in 85.6 0.72 2.5E-05 46.5 5.0 38 391-432 8-45 (208)
322 3lv8_A DTMP kinase, thymidylat 85.4 1.1 3.8E-05 46.1 6.4 40 410-451 29-70 (236)
323 3f9v_A Minichromosome maintena 85.3 0.45 1.6E-05 56.0 3.7 16 410-425 329-344 (595)
324 1rz3_A Hypothetical protein rb 85.3 1.4 4.7E-05 43.8 6.9 33 410-444 24-56 (201)
325 3ug7_A Arsenical pump-driving 85.2 1 3.6E-05 49.1 6.4 36 410-447 28-63 (349)
326 2pez_A Bifunctional 3'-phospho 85.1 0.51 1.7E-05 45.8 3.5 21 410-430 7-27 (179)
327 4tmk_A Protein (thymidylate ki 85.0 1.2 4.2E-05 45.0 6.3 48 410-458 5-53 (213)
328 1lvg_A Guanylate kinase, GMP k 84.9 0.54 1.9E-05 46.8 3.6 20 409-428 5-24 (198)
329 2og2_A Putative signal recogni 84.9 0.76 2.6E-05 50.5 5.1 35 410-446 159-193 (359)
330 3c8u_A Fructokinase; YP_612366 84.8 0.53 1.8E-05 47.1 3.5 24 410-434 24-47 (208)
331 3k1j_A LON protease, ATP-depen 84.6 0.81 2.8E-05 53.9 5.5 38 393-433 47-84 (604)
332 4eaq_A DTMP kinase, thymidylat 84.6 0.54 1.8E-05 48.2 3.5 32 410-444 28-59 (229)
333 1gtv_A TMK, thymidylate kinase 84.5 0.26 9E-06 49.2 1.1 22 411-433 3-24 (214)
334 3cmu_A Protein RECA, recombina 84.4 0.52 1.8E-05 62.3 3.9 47 410-458 1429-1475(2050)
335 2oze_A ORF delta'; para, walke 84.3 1 3.5E-05 47.5 5.7 55 394-451 21-80 (298)
336 4a74_A DNA repair and recombin 84.3 0.46 1.6E-05 47.8 2.8 21 410-430 27-47 (231)
337 3pxi_A Negative regulator of g 84.2 0.87 3E-05 55.2 5.7 21 410-430 523-543 (758)
338 3u4q_B ATP-dependent helicase/ 84.2 0.49 1.7E-05 60.3 3.6 79 725-806 585-692 (1166)
339 3cf2_A TER ATPase, transitiona 84.2 0.34 1.2E-05 58.8 2.1 42 384-425 474-528 (806)
340 4edh_A DTMP kinase, thymidylat 84.1 1.2 4.1E-05 45.0 5.8 40 410-451 8-48 (213)
341 1ls1_A Signal recognition part 84.1 0.9 3.1E-05 48.4 5.1 35 410-446 100-134 (295)
342 1svm_A Large T antigen; AAA+ f 84.0 0.89 3E-05 50.3 5.1 21 409-429 170-190 (377)
343 1c9k_A COBU, adenosylcobinamid 83.9 0.39 1.3E-05 47.5 2.0 44 411-460 2-45 (180)
344 2if2_A Dephospho-COA kinase; a 83.8 0.52 1.8E-05 46.8 2.9 17 411-427 4-20 (204)
345 2yhs_A FTSY, cell division pro 83.8 0.89 3E-05 52.0 5.1 33 410-444 295-327 (503)
346 2qmh_A HPR kinase/phosphorylas 83.8 0.56 1.9E-05 47.1 3.1 21 410-430 36-56 (205)
347 1r6b_X CLPA protein; AAA+, N-t 83.7 0.72 2.5E-05 55.8 4.7 23 410-433 490-512 (758)
348 3bfv_A CAPA1, CAPB2, membrane 83.5 1.3 4.6E-05 46.4 6.1 33 410-444 84-117 (271)
349 3ake_A Cytidylate kinase; CMP 83.4 0.66 2.3E-05 45.9 3.5 19 410-428 4-22 (208)
350 3zq6_A Putative arsenical pump 83.4 0.92 3.1E-05 49.0 4.9 36 410-447 16-51 (324)
351 1ltq_A Polynucleotide kinase; 83.4 0.56 1.9E-05 49.6 3.2 19 410-428 4-22 (301)
352 3cio_A ETK, tyrosine-protein k 83.3 1.4 4.9E-05 46.9 6.3 34 410-445 106-140 (299)
353 1uj2_A Uridine-cytidine kinase 82.9 0.59 2E-05 48.3 3.0 18 410-427 24-41 (252)
354 1ypw_A Transitional endoplasmi 82.5 0.38 1.3E-05 58.7 1.6 21 410-431 240-260 (806)
355 3r20_A Cytidylate kinase; stru 82.5 0.74 2.5E-05 47.4 3.5 18 410-427 11-28 (233)
356 2woo_A ATPase GET3; tail-ancho 82.5 1.1 3.8E-05 48.4 5.1 36 409-446 20-55 (329)
357 2qt1_A Nicotinamide riboside k 82.4 0.61 2.1E-05 46.4 2.8 17 410-426 23-39 (207)
358 2i3b_A HCR-ntpase, human cance 82.3 0.77 2.6E-05 45.6 3.5 24 410-434 3-26 (189)
359 1yew_A Particulate methane mon 82.2 4.4 0.00015 43.6 9.3 73 58-137 261-336 (382)
360 2www_A Methylmalonic aciduria 82.1 1.2 4.1E-05 48.7 5.2 36 409-446 75-110 (349)
361 3ney_A 55 kDa erythrocyte memb 82.1 0.68 2.3E-05 46.4 3.0 21 409-429 20-40 (197)
362 2eyu_A Twitching motility prot 82.1 0.78 2.7E-05 48.0 3.6 35 409-444 26-60 (261)
363 2ewv_A Twitching motility prot 82.0 0.73 2.5E-05 50.9 3.5 35 409-444 137-171 (372)
364 3crm_A TRNA delta(2)-isopenten 82.0 0.62 2.1E-05 50.4 2.8 21 410-430 7-27 (323)
365 2qm8_A GTPase/ATPase; G protei 81.8 1.2 4.1E-05 48.4 5.1 48 397-446 43-91 (337)
366 2woj_A ATPase GET3; tail-ancho 81.7 1.1 3.7E-05 49.2 4.6 39 409-447 19-57 (354)
367 2ga8_A Hypothetical 39.9 kDa p 81.4 0.99 3.4E-05 49.4 4.1 21 410-430 26-46 (359)
368 3tqc_A Pantothenate kinase; bi 81.3 1.7 5.9E-05 46.9 6.0 36 410-446 94-130 (321)
369 1uf9_A TT1252 protein; P-loop, 81.2 0.74 2.5E-05 45.3 2.9 18 410-427 10-27 (203)
370 2grj_A Dephospho-COA kinase; T 81.1 0.92 3.2E-05 45.1 3.5 19 410-428 14-32 (192)
371 3lda_A DNA repair protein RAD5 81.1 0.87 3E-05 50.8 3.7 39 409-447 179-221 (400)
372 3v9p_A DTMP kinase, thymidylat 81.0 1.8 6.1E-05 44.3 5.7 24 410-433 27-50 (227)
373 3nwj_A ATSK2; P loop, shikimat 80.5 1 3.5E-05 46.8 3.8 21 409-429 49-69 (250)
374 3asz_A Uridine kinase; cytidin 80.5 0.91 3.1E-05 45.2 3.3 23 410-433 8-30 (211)
375 1qvr_A CLPB protein; coiled co 80.4 0.7 2.4E-05 56.9 2.8 23 410-433 590-612 (854)
376 3bs4_A Uncharacterized protein 80.3 1.5 5.3E-05 45.8 5.0 48 410-460 23-70 (260)
377 3cmw_A Protein RECA, recombina 80.0 1 3.5E-05 58.8 4.3 48 409-458 384-431 (1706)
378 2p67_A LAO/AO transport system 80.0 1.4 4.8E-05 47.9 4.9 35 409-445 57-91 (341)
379 3lnc_A Guanylate kinase, GMP k 79.8 0.65 2.2E-05 47.2 1.9 19 409-427 28-46 (231)
380 1z6g_A Guanylate kinase; struc 79.8 0.94 3.2E-05 45.8 3.2 19 409-427 24-42 (218)
381 3kjh_A CO dehydrogenase/acetyl 79.8 0.88 3E-05 46.3 3.0 33 412-446 4-36 (254)
382 1vht_A Dephospho-COA kinase; s 79.8 0.94 3.2E-05 45.4 3.1 18 410-427 6-23 (218)
383 1ihu_A Arsenical pump-driving 79.7 1.4 4.9E-05 51.5 5.1 36 410-447 10-45 (589)
384 2ffh_A Protein (FFH); SRP54, s 79.5 2.2 7.5E-05 47.9 6.3 34 410-445 100-133 (425)
385 3end_A Light-independent proto 79.5 1.5 5E-05 46.7 4.7 33 411-445 44-76 (307)
386 3la6_A Tyrosine-protein kinase 79.1 2.2 7.5E-05 45.2 5.9 34 411-446 95-129 (286)
387 3gmt_A Adenylate kinase; ssgci 79.0 1 3.4E-05 46.3 3.0 19 411-429 11-29 (230)
388 3cmw_A Protein RECA, recombina 78.9 1.2 4E-05 58.3 4.3 47 410-458 734-780 (1706)
389 1so9_A Cytochrome C oxidase as 78.6 2.2 7.7E-05 41.0 5.1 80 56-151 57-144 (164)
390 2afh_E Nitrogenase iron protei 78.6 1.7 5.9E-05 45.7 4.9 32 411-444 5-36 (289)
391 1cp2_A CP2, nitrogenase iron p 78.4 1.6 5.5E-05 45.1 4.5 32 411-444 4-35 (269)
392 2f6r_A COA synthase, bifunctio 78.4 0.95 3.2E-05 47.8 2.7 20 410-429 77-96 (281)
393 1pzn_A RAD51, DNA repair and r 78.3 0.94 3.2E-05 49.5 2.8 22 410-431 133-154 (349)
394 2ius_A DNA translocase FTSK; n 78.3 1.7 5.8E-05 50.0 5.0 40 409-448 168-209 (512)
395 4e22_A Cytidylate kinase; P-lo 77.9 1.1 3.7E-05 46.5 3.0 19 410-428 29-47 (252)
396 3d3q_A TRNA delta(2)-isopenten 77.9 1.1 3.7E-05 48.8 3.0 21 410-430 9-29 (340)
397 4akg_A Glutathione S-transfera 77.7 1.2 4.2E-05 60.7 4.1 43 398-446 1259-1301(2695)
398 1q3t_A Cytidylate kinase; nucl 77.6 1.3 4.5E-05 45.1 3.5 18 410-427 18-35 (236)
399 1znw_A Guanylate kinase, GMP k 77.5 1.2 4E-05 44.5 3.0 19 409-427 21-39 (207)
400 1tf7_A KAIC; homohexamer, hexa 77.5 1.9 6.4E-05 49.8 5.1 47 409-458 282-328 (525)
401 1ypw_A Transitional endoplasmi 77.5 0.82 2.8E-05 55.8 2.2 23 410-433 513-535 (806)
402 1byi_A Dethiobiotin synthase; 77.4 2.2 7.6E-05 42.7 5.1 34 411-446 5-38 (224)
403 1z6t_A APAF-1, apoptotic prote 77.2 1.6 5.5E-05 50.9 4.5 38 393-430 130-169 (591)
404 2obl_A ESCN; ATPase, hydrolase 77.2 1.3 4.6E-05 48.3 3.6 35 396-430 59-93 (347)
405 3ld9_A DTMP kinase, thymidylat 77.0 2.9 9.9E-05 42.6 5.8 45 410-455 23-69 (223)
406 1nij_A Hypothetical protein YJ 77.0 1.5 5E-05 47.2 3.8 34 409-446 5-38 (318)
407 3fwy_A Light-independent proto 76.9 2.2 7.5E-05 45.9 5.1 35 410-446 50-84 (314)
408 3zvl_A Bifunctional polynucleo 76.8 0.81 2.8E-05 51.3 1.7 19 409-427 259-277 (416)
409 1s96_A Guanylate kinase, GMP k 76.5 1.1 3.9E-05 45.4 2.6 19 409-427 17-35 (219)
410 2h92_A Cytidylate kinase; ross 76.4 1.3 4.6E-05 44.2 3.1 18 410-427 5-22 (219)
411 3tqf_A HPR(Ser) kinase; transf 76.4 1.3 4.6E-05 43.3 2.9 20 411-430 19-38 (181)
412 3rfr_A PMOB; membrane, oxidore 76.3 8.1 0.00028 42.0 9.1 71 58-137 295-368 (419)
413 3a8t_A Adenylate isopentenyltr 76.3 0.89 3E-05 49.4 1.8 21 410-430 42-62 (339)
414 1sky_E F1-ATPase, F1-ATP synth 76.3 2.6 8.8E-05 47.8 5.6 63 397-459 140-203 (473)
415 2jeo_A Uridine-cytidine kinase 76.2 1.5 5.2E-05 44.9 3.5 23 410-433 27-49 (245)
416 3qis_A Inositol polyphosphate 76.1 18 0.00063 39.4 12.4 89 40-152 29-127 (366)
417 1hyq_A MIND, cell division inh 76.0 2.5 8.4E-05 43.6 5.1 33 411-445 6-38 (263)
418 3foz_A TRNA delta(2)-isopenten 76.0 1.1 3.8E-05 48.1 2.4 21 410-430 12-32 (316)
419 1fx0_B ATP synthase beta chain 75.6 2 6.7E-05 49.0 4.4 64 397-460 154-218 (498)
420 2ck3_D ATP synthase subunit be 75.5 1.7 6E-05 49.2 4.0 64 397-460 142-206 (482)
421 2f1e_A Protein APAG; APAG prot 75.5 31 0.0011 31.7 11.7 92 39-149 7-103 (127)
422 3cmu_A Protein RECA, recombina 75.4 1.5 5.2E-05 58.0 3.9 47 409-457 1082-1128(2050)
423 4dzz_A Plasmid partitioning pr 75.4 2 6.7E-05 42.3 4.0 33 412-446 6-38 (206)
424 3tmk_A Thymidylate kinase; pho 75.4 1.5 5.3E-05 44.4 3.2 22 410-431 7-28 (216)
425 2ph1_A Nucleotide-binding prot 75.3 2.2 7.6E-05 44.1 4.5 33 411-445 22-54 (262)
426 3aez_A Pantothenate kinase; tr 75.2 2.4 8.2E-05 45.5 4.8 36 410-446 92-128 (312)
427 3exa_A TRNA delta(2)-isopenten 75.0 1.2 4.2E-05 47.8 2.4 21 410-430 5-25 (322)
428 1odf_A YGR205W, hypothetical 3 75.0 1.7 5.7E-05 46.2 3.5 24 410-434 33-56 (290)
429 1sq5_A Pantothenate kinase; P- 74.9 2.2 7.4E-05 45.6 4.4 34 410-444 82-116 (308)
430 2iut_A DNA translocase FTSK; n 74.6 2.5 8.5E-05 49.2 5.0 40 409-448 215-256 (574)
431 3q9l_A Septum site-determining 74.3 2.5 8.4E-05 43.3 4.5 33 411-445 6-38 (260)
432 2axn_A 6-phosphofructo-2-kinas 74.0 2.4 8.2E-05 48.9 4.7 23 410-432 37-59 (520)
433 1g3q_A MIND ATPase, cell divis 74.0 2.6 8.8E-05 42.5 4.5 34 411-446 6-39 (237)
434 3jux_A Protein translocase sub 73.7 6.3 0.00022 47.0 8.1 61 392-459 77-137 (822)
435 1xq4_A Protein APAG; all beta 73.6 31 0.0011 32.2 11.3 92 39-149 11-107 (139)
436 1xvs_A Protein APAG; MCSG APC2 73.2 18 0.00061 33.3 9.5 93 39-149 6-102 (126)
437 2dyk_A GTP-binding protein; GT 73.0 1.9 6.4E-05 40.2 3.0 17 411-427 4-20 (161)
438 1tf7_A KAIC; homohexamer, hexa 73.0 2.8 9.5E-05 48.4 5.0 37 409-446 40-77 (525)
439 1a7j_A Phosphoribulokinase; tr 72.9 1.4 4.9E-05 46.7 2.4 20 410-429 7-26 (290)
440 2ocp_A DGK, deoxyguanosine kin 72.7 1.6 5.3E-05 44.7 2.5 20 410-429 4-23 (241)
441 2f9l_A RAB11B, member RAS onco 72.6 1.9 6.5E-05 42.3 3.0 17 411-427 8-24 (199)
442 2ck3_A ATP synthase subunit al 72.5 5.7 0.0002 45.3 7.2 65 397-461 151-223 (510)
443 2v9p_A Replication protein E1; 72.4 2.1 7.1E-05 45.9 3.5 30 409-443 127-156 (305)
444 3cwq_A Para family chromosome 72.4 3.2 0.00011 41.5 4.7 38 411-451 4-43 (209)
445 3hjn_A DTMP kinase, thymidylat 72.3 4.9 0.00017 39.9 6.0 45 411-457 3-48 (197)
446 1x6v_B Bifunctional 3'-phospho 72.3 2.1 7.3E-05 50.4 3.8 49 385-433 29-77 (630)
447 3ea0_A ATPase, para family; al 72.0 2.8 9.5E-05 42.5 4.3 35 411-446 8-42 (245)
448 3ez2_A Plasmid partition prote 72.0 2.2 7.5E-05 47.2 3.7 56 391-446 84-151 (398)
449 3eph_A TRNA isopentenyltransfe 71.9 2 6.7E-05 47.8 3.2 22 410-431 4-25 (409)
450 2a5y_B CED-4; apoptosis; HET: 71.9 2.2 7.5E-05 49.5 3.8 66 394-459 135-208 (549)
451 1nrj_B SR-beta, signal recogni 71.8 2 6.8E-05 42.7 3.0 18 410-427 14-31 (218)
452 3igf_A ALL4481 protein; two-do 71.4 1.9 6.4E-05 47.6 2.9 34 411-446 5-38 (374)
453 3vkg_A Dynein heavy chain, cyt 71.3 3.1 0.0001 57.6 5.4 58 396-459 1294-1352(3245)
454 1oix_A RAS-related protein RAB 71.1 2 6.8E-05 42.0 2.8 17 411-427 32-48 (191)
455 1f2t_A RAD50 ABC-ATPase; DNA d 71.0 2.8 9.5E-05 39.6 3.7 24 409-433 24-47 (149)
456 1z2a_A RAS-related protein RAB 70.8 2.3 7.8E-05 39.8 3.0 17 411-427 8-24 (168)
457 2wji_A Ferrous iron transport 70.7 2.3 7.8E-05 40.3 3.0 17 411-427 6-22 (165)
458 2gza_A Type IV secretion syste 70.5 2.9 0.0001 45.8 4.2 20 409-428 176-195 (361)
459 2ce2_X GTPase HRAS; signaling 70.4 2.2 7.4E-05 39.6 2.8 17 411-427 6-22 (166)
460 1kao_A RAP2A; GTP-binding prot 70.3 2.3 8E-05 39.5 3.0 16 411-426 6-21 (167)
461 2ged_A SR-beta, signal recogni 69.7 2.4 8.1E-05 41.0 3.0 18 410-427 50-67 (193)
462 2dpy_A FLII, flagellum-specifi 69.5 3 0.0001 47.1 4.0 56 396-454 145-201 (438)
463 3kta_A Chromosome segregation 69.4 2.1 7.2E-05 41.3 2.5 24 409-433 27-50 (182)
464 3k9g_A PF-32 protein; ssgcid, 69.1 2 6.9E-05 44.4 2.4 40 412-454 32-73 (267)
465 3idu_A Uncharacterized protein 69.0 24 0.00081 32.5 9.4 71 56-152 28-99 (127)
466 1vt4_I APAF-1 related killer D 68.8 5.5 0.00019 49.6 6.4 53 393-445 134-189 (1221)
467 1wms_A RAB-9, RAB9, RAS-relate 68.8 2.6 8.9E-05 39.9 3.0 17 411-427 10-26 (177)
468 2pt7_A CAG-ALFA; ATPase, prote 68.6 2.5 8.4E-05 45.8 3.1 19 409-427 172-190 (330)
469 1ek0_A Protein (GTP-binding pr 68.5 2.7 9.3E-05 39.3 3.0 17 411-427 6-22 (170)
470 1ky3_A GTP-binding protein YPT 68.4 2.7 9.2E-05 39.9 3.0 17 411-427 11-27 (182)
471 1bif_A 6-phosphofructo-2-kinas 68.3 4.1 0.00014 46.2 5.0 24 410-433 41-64 (469)
472 1u8z_A RAS-related protein RAL 68.2 2.8 9.5E-05 39.0 3.0 17 411-427 7-23 (168)
473 1g16_A RAS-related protein SEC 68.1 2.6 8.8E-05 39.5 2.8 17 411-427 6-22 (170)
474 1p5z_B DCK, deoxycytidine kina 67.9 2.1 7.3E-05 44.3 2.3 18 410-427 26-43 (263)
475 1tq4_A IIGP1, interferon-induc 67.8 3.3 0.00011 46.3 3.9 32 394-427 57-88 (413)
476 1jr3_D DNA polymerase III, del 67.4 7.3 0.00025 41.8 6.6 26 409-434 19-44 (343)
477 1tza_A APAG protein, SOR45; st 67.3 29 0.00099 32.2 9.6 90 39-150 6-103 (134)
478 2erx_A GTP-binding protein DI- 67.2 2.9 0.0001 39.1 3.0 17 411-427 6-22 (172)
479 1htw_A HI0065; nucleotide-bind 67.1 3 0.0001 40.0 3.0 23 410-433 35-57 (158)
480 2r9v_A ATP synthase subunit al 66.9 4.6 0.00016 46.1 4.9 62 397-461 164-228 (515)
481 1z0j_A RAB-22, RAS-related pro 66.8 3 0.0001 39.0 3.0 17 411-427 9-25 (170)
482 2nzj_A GTP-binding protein REM 66.8 3 0.0001 39.3 3.0 16 411-426 7-22 (175)
483 1r2q_A RAS-related protein RAB 66.5 3.1 0.00011 38.8 3.0 17 411-427 9-25 (170)
484 2f1r_A Molybdopterin-guanine d 66.5 1.8 6.3E-05 42.1 1.3 24 410-434 4-27 (171)
485 3q85_A GTP-binding protein REM 66.3 3.2 0.00011 38.9 3.0 16 411-426 5-20 (169)
486 3fkq_A NTRC-like two-domain pr 66.3 3.6 0.00012 45.1 3.8 34 411-446 147-180 (373)
487 3qf7_A RAD50; ABC-ATPase, ATPa 66.3 3.3 0.00011 45.4 3.5 25 409-434 24-48 (365)
488 1z08_A RAS-related protein RAB 66.2 3.2 0.00011 38.9 3.0 17 411-427 9-25 (170)
489 2zej_A Dardarin, leucine-rich 66.1 2.7 9.2E-05 40.6 2.5 17 411-427 5-21 (184)
490 2qe7_A ATP synthase subunit al 66.0 4.7 0.00016 45.9 4.8 63 397-461 151-215 (502)
491 2lkc_A Translation initiation 66.0 3.2 0.00011 39.3 3.0 18 410-427 10-27 (178)
492 4hlc_A DTMP kinase, thymidylat 66.0 7.6 0.00026 38.8 5.9 45 410-457 4-49 (205)
493 1c1y_A RAS-related protein RAP 65.9 3.3 0.00011 38.6 3.0 17 411-427 6-22 (167)
494 1svi_A GTP-binding protein YSX 65.8 2.9 9.9E-05 40.4 2.7 19 410-428 25-43 (195)
495 1pui_A ENGB, probable GTP-bind 65.3 2.5 8.4E-05 41.6 2.1 17 410-426 28-44 (210)
496 3qks_A DNA double-strand break 65.1 4.1 0.00014 40.6 3.7 25 409-434 24-48 (203)
497 2xj4_A MIPZ; replication, cell 65.1 4.2 0.00014 42.6 4.0 31 412-444 9-39 (286)
498 2y8e_A RAB-protein 6, GH09086P 65.1 3.2 0.00011 39.2 2.8 17 411-427 17-33 (179)
499 2wjg_A FEOB, ferrous iron tran 65.0 3.4 0.00012 39.6 3.0 17 411-427 10-26 (188)
500 1sgw_A Putative ABC transporte 65.0 2.8 9.6E-05 42.3 2.4 34 409-444 36-69 (214)
No 1
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=100.00 E-value=1.5e-82 Score=765.78 Aligned_cols=550 Identities=29% Similarity=0.380 Sum_probs=420.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHh----hhh----------ccccccEEE--Ee---Cc-EEEEEecCCCCCC--C--CCC
Q 002841 236 TLKNYTSFFKTLLIMEEIQLKED----MRA----------YDMENVTLM--RK---GL-YLSLVVPGLAERR--P--SLV 291 (874)
Q Consensus 236 ~~~~Y~~~f~~Ll~lEe~~~~~~----~~~----------~~~~~~~~~--~~---~~-~~~l~vpgl~e~r--p--s~~ 291 (874)
+.++|.++|..||.+|+.+.... +.. ..+.++.+. .. |. ++.|+.+...... | .+.
T Consensus 3 ~~~~~~~~~~~Ll~~E~~~e~~~~~~~~~~~~~~~~~~~G~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~ 82 (646)
T 4b3f_X 3 AVESFVTKQLDLLELERDAEVEERRSWQENISLKELQSRGVCLLKLQVSSQRTGLYGRLLVTFEPRRYGSAAALPSNSFT 82 (646)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHGGGTSEEEEEEEEEEEECSSSCEEEEEEESCC---CCCCCCCCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHhCCceecceEEEEEEecCCCeEEEEEEecCCCCCCCCccCCCC
Confidence 36899999999999995422111 111 111122221 11 33 3456655433322 2 488
Q ss_pred CCCEEEEEecCCCCCccEEEEEEEEeCcEEEEEECCCccc--cCCCCCcEEEEEEechhhHHHHHHHhHHHhhc------
Q 002841 292 NGDFIFAKHAYEDTSSAYQGFIHRVEADEVHLKFASDFQL--NHRDENLYNVQFTYNRVNMRRLYQATDAAQEL------ 363 (874)
Q Consensus 292 ~GD~v~~~~~~~~~~~~~~g~v~~v~~~~v~l~~~~~~~~--~~~~~~~~~v~f~~~r~~~~r~~~Al~~~~~~------ 363 (874)
.||.|.++...+.....++|+|++|..++|.+.|+..... .......|.+.+..|+.+++||+.|++.+...
T Consensus 83 ~Gd~v~~~~~~~~~~~~~~g~v~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~al~~l~~~~~~~~~ 162 (646)
T 4b3f_X 83 SGDIVGLYDAANEGSQLATGILTRVTQKSVTVAFDESHDFQLSLDRENSYRLLKLANDVTYRRLKKALIALKKYHSGPAS 162 (646)
T ss_dssp TTCEEEEEETTTTSCCCEEEEEEEEETTEEEEECC-------CCCSSCCEEEEEECCHHHHHHHHHHHHHHHTCCSSTTH
T ss_pred CCCEEEEEecCCCCCceEEEEEEEEeCCEEEEEECCccccccccCCCCcEEEEEeccchHHHHHHHHHHHhhhcccCchH
Confidence 9999999877555567899999999999999999765432 23345679999999999999999999876532
Q ss_pred -ccccccCCCCCCccccccCCCCcCCCCCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEE
Q 002841 364 -DTEFLFPSESSGIRLIESNTLVPISCNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLL 442 (874)
Q Consensus 364 -~~~~lfP~~~~~~~~~~~~~~~~~~~~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rIL 442 (874)
..++||+... +........+.+++..||++|++||..++..+ +++||+||||||||+|++++|.++++ .+.+||
T Consensus 163 ~l~~~l~~~~~-p~~~~~~~~~~~~~~~LN~~Q~~AV~~al~~~--~~~lI~GPPGTGKT~ti~~~I~~l~~--~~~~IL 237 (646)
T 4b3f_X 163 SLIEVLFGRSA-PSPASEIHPLTFFNTCLDTSQKEAVLFALSQK--ELAIIHGPPGTGKTTTVVEIILQAVK--QGLKVL 237 (646)
T ss_dssp HHHHHHTTSSC-CCCCCCCCCCCCSSTTCCHHHHHHHHHHHHCS--SEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEE
T ss_pred HHHHHHcCCCC-CCCccccCcccccCCCCCHHHHHHHHHHhcCC--CceEEECCCCCCHHHHHHHHHHHHHh--CCCeEE
Confidence 2346776544 22222233456788999999999999999754 46899999999999999999999997 468999
Q ss_pred EecCCHHHHHHHHHHHhcccccccccccEEEecCCCCCCcCCchhhhhhcc---------------ccchh---------
Q 002841 443 VCAPSNSAADHLLEKILGEKAVEVRENEIFRLNAPSRPYEDVNADHIRFCF---------------FDEQI--------- 498 (874)
Q Consensus 443 v~ApSNsAaD~l~~rL~~~~~~~~~~~~i~Rl~~~~r~~~~v~~~~~~~~~---------------~~~~~--------- 498 (874)
+|||||.|||+|++||... ...++|++...+....+......... .+...
T Consensus 238 v~a~TN~AvD~i~erL~~~------~~~ilRlG~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (646)
T 4b3f_X 238 CCAPSNIAVDNLVERLALC------KQRILRLGHPARLLESIQQHSLDAVLARSDSAQIVADIRKDIDQVFVKNKKTQDK 311 (646)
T ss_dssp EEESSHHHHHHHHHHHHHT------TCCEEECSCCSSCCHHHHTTBHHHHHTTTTCSSTHHHHHHHHTTSSTTTTC----
T ss_pred EEcCchHHHHHHHHHHHhc------CCceEEecchhhhhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 9999999999999999752 34689999877643332211110000 00000
Q ss_pred --------------------ccCCchhhcccceEEEEechhhhhhhh-cccCCCCccEEEEEcCCCCChhhhHHHhhccc
Q 002841 499 --------------------FKCPPLAALVCYRIIISTYMSASLIYA-EGVDRGHFSHIFLDEAGQASEPESMVPISSYC 557 (874)
Q Consensus 499 --------------------~~~~~~~~L~~~~VI~~T~~sa~~l~~-~~~~~~~fd~ViIDEAsQ~~epe~li~L~~l~ 557 (874)
......+.+..++||++||.+++.... ..+...+||+||||||+|+++|++++||..
T Consensus 312 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~~~vv~~t~~~a~~~~~~~~~~~~~Fd~vIIDEAsQ~~e~~~lipL~~-- 389 (646)
T 4b3f_X 312 REKSNFRNEIKLLRKELKEREEAAMLESLTSANVVLATNTGASADGPLKLLPESYFDVVVIDECAQALEASCWIPLLK-- 389 (646)
T ss_dssp --CCSSHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEEETTTTCSSSGGGGSCTTCCSEEEETTGGGSCHHHHTTTGGG--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceeeeehhhhhhhhHHHhhhhccCCEEEEcCccccchHHHHhhccc--
Confidence 000011346778999999998764322 335567899999999999999999999862
Q ss_pred cCCcEEEEecCCCcccceeecchhhhcCCCccHHHHHHhcCCCCCCCccceeecccccCCchhhhccccccccccccccc
Q 002841 558 KKDTVVVLAGDPMQLGPVIYSREAETYGMGKSYLERLFECEPYCHGNENYVTKLVRNYRSHPQILHLPSKLFYEEELIAC 637 (874)
Q Consensus 558 ~~~~~vVLvGDp~QL~PvI~s~~a~~~gl~~SlfeRL~~~~~~~~~~~~~~~~L~~nYRshp~I~~~~n~~fY~~~L~~~ 637 (874)
..++||||||+||||++.+..+...|++.|+|+||..... +..+++|.+||||||.|++|+|+.||+|+|.+.
T Consensus 390 --~~~~ILVGD~~QLpP~v~~~~a~~~gl~~SlferL~~~~~-----~~~v~~L~~qYRmhp~I~~f~n~~fY~g~L~~~ 462 (646)
T 4b3f_X 390 --ARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEYG-----ARVVRTLTVQYRMHQAIMRWASDTMYLGQLTAH 462 (646)
T ss_dssp --SSEEEEEECTTSCCCCCSCHHHHHTTTTCCHHHHHHHHHG-----GGTEEECCEESSSCHHHHHHHHHHHSTTCCEEC
T ss_pred --cceEEEcCCccccCceecchhhhhccccchHHHHHHHhcC-----CceeeecccccCCcHHHHhhhHHhhcCCccccC
Confidence 3579999999999999999999999999999999976432 234678999999999999999999999999987
Q ss_pred cccccccccc---ccCCCCCCCCEEEEecCCCc---cccCCCCCccCHHHHHHHHHHHHHHHHcCCCCCCeEEEEcccHH
Q 002841 638 KDESISCTAY---LNFLPNKEFPVLFFGIQGCD---EREGSNPSWFNRIEVSKVVEIIQKLTSTGNLSEEDIGVITPYRQ 711 (874)
Q Consensus 638 ~~~~~~~~~~---~~~~~~~~~pi~f~~v~g~~---~~~~~s~S~~N~~Ea~~V~~~v~~L~~~~~~~~~dIgIItPY~~ 711 (874)
.+...+.... +...+....|++|+++.|.. ..+..+.|+.|..||..|+.+++.|++.| +++++|||||||++
T Consensus 463 ~~~~~~~~~~lp~~~~~~~~~~p~~f~d~~g~~~~~~~~~~~~s~~N~~EA~~V~~~v~~L~~~g-v~~~dIgVItpYra 541 (646)
T 4b3f_X 463 SSVARHLLRDLPGVAATEETGVPLLLVDTAGCGLFELEEEDEQSKGNPGEVRLVSLHIQALVDAG-VPARDIAVVSPYNL 541 (646)
T ss_dssp TTTTTCCGGGSTTCCCCTTTTCSEEEEECTTSSCCCCC-----CCCCHHHHHHHHHHHHHHHHHT-CCGGGEEEEESCHH
T ss_pred cchhhhhhccccccccccccCCceEEEecCCCccccccccCCccccCHHHHHHHHHHHHHHHhcC-CCcCcEEEECCCHH
Confidence 7654443332 23344566799999998863 34556789999999999999999999986 89999999999999
Q ss_pred HHHHHHHHHHhcCCCCeEECccccCCCceeeEEEEEeccCCCcCCccccccccccCCCCCceEeccccccccEEEEEccc
Q 002841 712 QVLKLNKALESLYMPDIKVGSVEQFQGQERQVIIVSTVRSTIKHNDFDRKHCLGFLSNPRRFNVAVTRAISLLIIIGNPH 791 (874)
Q Consensus 712 Qv~~Ir~~L~~~~~~~v~V~TVd~fQG~E~dvVIiS~VRs~~~~~~~d~~~~lGFl~d~rrlNVAiTRAK~~LiIvGn~~ 791 (874)
|+..|++.|.+. .++++|+|||+|||+|+|+||+|+|||+. .+.+||+.|+||||||+||||++||||||+.
T Consensus 542 Q~~~l~~~l~~~-~~~i~v~TVd~fQG~E~dvII~S~vrsn~-------~~~iGFl~~~rRlNVAlTRAk~~liivGn~~ 613 (646)
T 4b3f_X 542 QVDLLRQSLVHR-HPELEIKSVDGFQGREKEAVILSFVRSNR-------KGEVGFLAEDRRINVAVTRARRHVAVICDSR 613 (646)
T ss_dssp HHHHHHHHHTTT-CTTCEEEEGGGGTTCCEEEEEEECCCCCT-------TCCCCSTTCHHHHHHHHHTEEEEEEEEECHH
T ss_pred HHHHHHHHHHHh-CCCCEECChhhcccccCCEEEEEeccCCC-------CCCccccCCcCcEEeEhhhhhCeEEEEEchH
Confidence 999999999763 57899999999999999999999999985 3679999999999999999999999999999
Q ss_pred cccCChHHHHHHHHHHhCCCccc
Q 002841 792 IVSKDPYWHQLLWYCSDNNSYQG 814 (874)
Q Consensus 792 ~L~~~~~w~~ll~~~~~~~~~~g 814 (874)
+|+++++|++|++||+++|.+..
T Consensus 614 ~l~~~~~~~~li~~~~~~g~~~~ 636 (646)
T 4b3f_X 614 TVNNHAFLKTLVEYFTQHGEVRT 636 (646)
T ss_dssp HHTTSHHHHHHHHHHHHSSEEEE
T ss_pred HhcCCHHHHHHHHHHHHCCCEee
Confidence 99999999999999999998764
No 2
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=100.00 E-value=1.1e-77 Score=732.20 Aligned_cols=637 Identities=27% Similarity=0.382 Sum_probs=465.5
Q ss_pred EEEcc---CeEEEEEEEEeechhhhh---------cccCCCCccCCCCCccccceEeeCCCC------CCcccccccccC
Q 002841 148 QFDVE---DRIERVVFLLAEDKISQS---------LASKRPYSRGGRKKQFSVDKYVVGSRP------ARYRGQIYQNRL 209 (874)
Q Consensus 148 ~f~~~---~~~~r~~~~~~~~~~~~~---------l~~~~p~~~~~~~~~~~~~~~~~g~~~------~~~~~~~~~~~l 209 (874)
+|.+| .+-+.+++++|+++|... +..|.|.+..+ .+.+|+...|. .+..+...+.+|
T Consensus 77 ~f~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (800)
T 2wjy_A 77 VFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDR-----CFLSWLVKIPSEQEQLRARQITAQQINKL 151 (800)
T ss_dssp TTTCEEEC-----CCEECCTTTTSSTTC----------CEESBCSS-----SBCTTTSCCCCHHHHHHSCCCCHHHHHHH
T ss_pred eeeeeceecccCceEEEEecCcccccchhhccCCCHHhcccccccc-----cccHhhcCCCCHHHHhhhcCCCHHHHHHH
Confidence 47777 366788899999998432 36788888888 67778877763 344556667888
Q ss_pred CCCCCCh------HHHHHHHhcCCCchhcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccccccEEEEe----C-cEEEE
Q 002841 210 PRYDIPN------HIRELIERKQIPDAITDGLTLKNYTSFFKTLLIMEEIQLKEDMRAYDMENVTLMRK----G-LYLSL 278 (874)
Q Consensus 210 ~~y~~p~------~~~~~i~~~~~~~~l~~~l~~~~Y~~~f~~Ll~lEe~~~~~~~~~~~~~~~~~~~~----~-~~~~l 278 (874)
+.+|.+. ++.+....+.+++++..+.+..+|.+.|.+|+.+|+...........+.++.++.. + ....+
T Consensus 152 e~~~~~~~~~~~~~~~~~~~~~~~~~v~~~y~~~~~Y~~~~~~l~~lE~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 231 (800)
T 2wjy_A 152 EELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYF 231 (800)
T ss_dssp HHHHTTCTTCCTTC--------CCCCCCSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEECCEEEECTTCCEEEEE
T ss_pred HHHhccCcCcchhhhhhccccccccccccccCCHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEEEecCCCeeEEEE
Confidence 8887544 44444445667888999999999999999999999763221111223344443322 2 34457
Q ss_pred EecCCCCCCCCCCCCCEEEEEecCCC-CCccEEEEEEEEeC---cEEEEEECCCccccCCCCCcEEEEEEechhhHHHHH
Q 002841 279 VVPGLAERRPSLVNGDFIFAKHAYED-TSSAYQGFIHRVEA---DEVHLKFASDFQLNHRDENLYNVQFTYNRVNMRRLY 354 (874)
Q Consensus 279 ~vpgl~e~rps~~~GD~v~~~~~~~~-~~~~~~g~v~~v~~---~~v~l~~~~~~~~~~~~~~~~~v~f~~~r~~~~r~~ 354 (874)
.+|+ .+.++++..||.|+++..... ....+.|+|+++.. ++|.+.++............|.++|.+++++++||+
T Consensus 232 ~~~~-~~~~~~l~~GD~v~l~~~~~~~~~~~~~g~V~~v~~~~~~~v~l~~~~~~~~p~~~~~~~~v~~~~~~~~~~r~~ 310 (800)
T 2wjy_A 232 TLPK-TDSDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQ 310 (800)
T ss_dssp CCCB-CCC--CCCTTCEEEEEECSSSSCCEEEEEEEEECSBTTBSCEEEEESCCTTCCTTCCSCEEEEECCCCHHHHHHH
T ss_pred Eecc-ccCCCCCCCCCEEEEEECCCCCCCceeEEEEEEEcCCCCCEEEEEEccCCCCccccCCCceEEEeecCChHHHHH
Confidence 7888 788899999999999976422 22357899999986 789999965433222234569999999999999999
Q ss_pred HHhHHHhhcc-------cccccCCCCCCcc--ccccCCCC-cCCCCCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHH
Q 002841 355 QATDAAQELD-------TEFLFPSESSGIR--LIESNTLV-PISCNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMT 424 (874)
Q Consensus 355 ~Al~~~~~~~-------~~~lfP~~~~~~~--~~~~~~~~-~~~~~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~T 424 (874)
.|++...... ...++........ ......+. +....||++|++||..++.. ++++|+||||||||+|
T Consensus 311 ~aL~~~~~~e~~~~~~l~~~ll~~~~~~~~~~~~l~~~~~~~~~~~Ln~~Q~~Av~~~l~~---~~~lI~GppGTGKT~t 387 (800)
T 2wjy_A 311 SALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQR---PLSLIQGPPGTGKTVT 387 (800)
T ss_dssp HHHHHHHHCTTSBCHHHHHHHTTCCCCCCCCCCCCCSCCSCTTSCCCCHHHHHHHHHHHTS---SEEEEECCTTSCHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHhcCCCCCchhhcccCccccccccccCCCHHHHHHHHHhccC---CeEEEEcCCCCCHHHH
Confidence 9997643211 1122322110000 00001111 23467999999999999874 5689999999999999
Q ss_pred HHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHhcccccccccccEEEecCCCCCCcC-------Cch---------hh
Q 002841 425 LVEAILQLYATREDARLLVCAPSNSAADHLLEKILGEKAVEVRENEIFRLNAPSRPYED-------VNA---------DH 488 (874)
Q Consensus 425 lve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~~~~~~~~~~~~i~Rl~~~~r~~~~-------v~~---------~~ 488 (874)
+++++.++++. ++.+||+|||||.|||+|.+|+.+. ...++|+++..+.... ++. .+
T Consensus 388 i~~~i~~l~~~-~~~~ilv~a~tn~A~~~l~~~l~~~------g~~vvRlg~~~r~~i~~~~~~~tlh~~~~~~~~~~~l 460 (800)
T 2wjy_A 388 SATIVYHLARQ-GNGPVLVCAPSNIAVDQLTEKIHQT------GLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPEL 460 (800)
T ss_dssp HHHHHHHHHTT-CSSCEEEEESSHHHHHHHHHHHHTT------TCCEEECCCGGGGGCCCTTGGGBHHHHHHTCTTCHHH
T ss_pred HHHHHHHHHHc-CCCcEEEEcCcHHHHHHHHHHHHHh------CcceEeecccchhhhcchhhhhhHHHHHHcCccHHHH
Confidence 99999888753 5789999999999999999999763 1247888775542100 000 00
Q ss_pred hhhcccc----------chhcc----CCchhhcccceEEEEechhhhhhhhcccCCCCccEEEEEcCCCCChhhhHHHhh
Q 002841 489 IRFCFFD----------EQIFK----CPPLAALVCYRIIISTYMSASLIYAEGVDRGHFSHIFLDEAGQASEPESMVPIS 554 (874)
Q Consensus 489 ~~~~~~~----------~~~~~----~~~~~~L~~~~VI~~T~~sa~~l~~~~~~~~~fd~ViIDEAsQ~~epe~li~L~ 554 (874)
.++.... +..+. ....+.+..++||++|+.+++.. .+...+||+||||||+|+++|+.++++.
T Consensus 461 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~~~~---~l~~~~fd~viIDEAsQ~~e~~~li~l~ 537 (800)
T 2wjy_A 461 QKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDP---RLAKMQFRSILIDESTQATEPECMVPVV 537 (800)
T ss_dssp HHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHCSEEEEETGGGGCT---TTTTCCCSEEEETTGGGSCHHHHHHHHT
T ss_pred HHHHHHHHhhcccChHHHHHHHHHHHHHHHhhhccCCEEEEchhhhCCh---hhhcCCCCEEEEECCCCCCcHHHHHHHH
Confidence 0000000 00000 00123467899999999987642 3445689999999999999999888886
Q ss_pred ccccCCcEEEEecCCCcccceeecchhhhcCCCccHHHHHHhcCCCCCCCccceeecccccCCchhhhcccccccccccc
Q 002841 555 SYCKKDTVVVLAGDPMQLGPVIYSREAETYGMGKSYLERLFECEPYCHGNENYVTKLVRNYRSHPQILHLPSKLFYEEEL 634 (874)
Q Consensus 555 ~l~~~~~~vVLvGDp~QL~PvI~s~~a~~~gl~~SlfeRL~~~~~~~~~~~~~~~~L~~nYRshp~I~~~~n~~fY~~~L 634 (874)
. ...++||+|||+||||++++..+...|++.|+|+||...+. ..++|++||||||+|++|+|.+||+++|
T Consensus 538 ~---~~~~~ilvGD~~QLpPvv~s~~a~~~gl~~SlFerL~~~g~-------~~~~L~~qYRm~p~I~~f~n~~fY~g~L 607 (800)
T 2wjy_A 538 L---GAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGI-------RPIRLQVQYRMHPALSAFPSNIFYEGSL 607 (800)
T ss_dssp T---TBSEEEEEECTTSCCCCCCCHHHHHTTTTSCHHHHHHHTTC-------CCEECCEECSSCHHHHHHHHHHHSTTCC
T ss_pred h---cCCeEEEecccccCCCeecchhhhhcCcchHHHHHHHhCCC-------CceEehhhcCCCcHHHHhhHHHhcCCcc
Confidence 3 24579999999999999999998889999999999986432 2468999999999999999999999998
Q ss_pred ccccccccccccc-ccCCCCCCCCEEEEecCCCccccCCCCCccCHHHHHHHHHHHHHHHHcCCCCCCeEEEEcccHHHH
Q 002841 635 IACKDESISCTAY-LNFLPNKEFPVLFFGIQGCDEREGSNPSWFNRIEVSKVVEIIQKLTSTGNLSEEDIGVITPYRQQV 713 (874)
Q Consensus 635 ~~~~~~~~~~~~~-~~~~~~~~~pi~f~~v~g~~~~~~~s~S~~N~~Ea~~V~~~v~~L~~~~~~~~~dIgIItPY~~Qv 713 (874)
.+......+.... ...++....|++|+++.|.++....+.|+.|..||+.|++++..|++.| +++++|||||||++|+
T Consensus 608 ~~~~~~~~r~~~~~~~~~~~~~~p~~f~~~~g~e~~~~~~~S~~N~~Ea~~V~~~v~~L~~~g-~~~~dIgVItPy~~Q~ 686 (800)
T 2wjy_A 608 QNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAG-AKPDQIGIITPYEGQR 686 (800)
T ss_dssp EESSCSGGGSCTTCCCCCSSTTSCEEEEECCCCCEECSSBSCEECHHHHHHHHHHHHHHHHTT-CCGGGEEEECSCHHHH
T ss_pred ccCCchhhhccccccccccCCCCCEEEEEcCCceeecCCCCcccCHHHHHHHHHHHHHHHHcC-CCcccEEEEeccHHHH
Confidence 7654432221111 1123456789999999988777778889999999999999999999885 8889999999999999
Q ss_pred HHHHHHHHhcCC------CCeEECccccCCCceeeEEEEEeccCCCcCCccccccccccCCCCCceEeccccccccEEEE
Q 002841 714 LKLNKALESLYM------PDIKVGSVEQFQGQERQVIIVSTVRSTIKHNDFDRKHCLGFLSNPRRFNVAVTRAISLLIII 787 (874)
Q Consensus 714 ~~Ir~~L~~~~~------~~v~V~TVd~fQG~E~dvVIiS~VRs~~~~~~~d~~~~lGFl~d~rrlNVAiTRAK~~LiIv 787 (874)
..|++.|.+.+. .++.|+|||+|||+|+|+||+|+||++. ..++||+.|+||||||+||||.+|+||
T Consensus 687 ~~I~~~L~~~~~~~~~~~~~v~V~TVd~fQG~E~dvVIlS~vrs~~-------~~~~gfl~d~rrLNVAlTRAk~~LiIv 759 (800)
T 2wjy_A 687 SYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANE-------HQGIGFLNDPRRLNVALTRARYGVIIV 759 (800)
T ss_dssp HHHHHHHHHHCSSCHHHHHTSEEECGGGGTTCCEEEEEEECCCCSC-------CCCCGGGTCHHHHHHHHTSEEEEEEEE
T ss_pred HHHHHHHHhcCcccccccCceEEccccccCCCcCCEEEEEecCCCC-------ccccccccCcchhhhhHHhhhccEEEE
Confidence 999999976542 4799999999999999999999999874 256899999999999999999999999
Q ss_pred EccccccCChHHHHHHHHHHhCCCcccCCCCccc
Q 002841 788 GNPHIVSKDPYWHQLLWYCSDNNSYQGCALPERE 821 (874)
Q Consensus 788 Gn~~~L~~~~~w~~ll~~~~~~~~~~g~~~p~~~ 821 (874)
||+.+|+.++.|+.+++||+++|++...+++...
T Consensus 760 G~~~~l~~~~~w~~ll~~~~~~~~~~~~~~~~l~ 793 (800)
T 2wjy_A 760 GNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLR 793 (800)
T ss_dssp ECHHHHTSSHHHHHHHHHHHHTTCEEESCGGGCE
T ss_pred ECHHHhccCHHHHHHHHHHHHCCCEEeCCHHHhh
Confidence 9999999999999999999999999877654443
No 3
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.3e-76 Score=716.07 Aligned_cols=631 Identities=26% Similarity=0.373 Sum_probs=452.2
Q ss_pred EEEcc---CeEEEEEEEEeechhhhh------cccCCCCccCCCCCccccceEeeCCCCC------CcccccccccCCCC
Q 002841 148 QFDVE---DRIERVVFLLAEDKISQS------LASKRPYSRGGRKKQFSVDKYVVGSRPA------RYRGQIYQNRLPRY 212 (874)
Q Consensus 148 ~f~~~---~~~~r~~~~~~~~~~~~~------l~~~~p~~~~~~~~~~~~~~~~~g~~~~------~~~~~~~~~~l~~y 212 (874)
+|.+| .+-+.+++++|+++|... +..|.|.+..+ .+.+|+...|.. +..+...+.+|+..
T Consensus 82 ~f~lg~~~~~~~~~~~~~cr~~c~~~~~~~~~~~~~~~~i~~~-----~~~~~~~~~p~~~~~~~~~~~~~~~i~~~e~~ 156 (802)
T 2xzl_A 82 VFLLGFVSAKSEAVVVLLCRIPCAQTKNANWDTDQWQPLIEDR-----QLLSWVAEQPTEEEKLKARLITPSQISKLEAK 156 (802)
T ss_dssp TTTEEEEC------CEEEETTTTTTCC---CCGGGCEESBCSS-----SBCTTTSCCCCTTGGGGSCCCCHHHHHHHHHH
T ss_pred eeeeeeeeccCCceEEEEeCCcccchhhcCCcHhhCceeeccc-----ccchhhccCCCHHHhhhhcCCCHHHHHHHHHH
Confidence 47777 366889999999999543 36788998888 677788777642 22333334555555
Q ss_pred CC--ChHHHHHHH----hcCCCchhcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccccccEEEEe----C-cEEEEEec
Q 002841 213 DI--PNHIRELIE----RKQIPDAITDGLTLKNYTSFFKTLLIMEEIQLKEDMRAYDMENVTLMRK----G-LYLSLVVP 281 (874)
Q Consensus 213 ~~--p~~~~~~i~----~~~~~~~l~~~l~~~~Y~~~f~~Ll~lEe~~~~~~~~~~~~~~~~~~~~----~-~~~~l~vp 281 (874)
|. |....+.++ .+.+++++..+.+..+|.+.|.+||.+|+..-........+.++.+... + ....+.+|
T Consensus 157 w~~~~~~~l~d~~~~~~~~~~~~v~~~y~~~~~Y~~~~~~ll~lE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (802)
T 2xzl_A 157 WRSNKDATINDIDAPEEQEAIPPLLLRYQDAYEYQRSYGPLIKLEADYDKQLKESQALEHISVSWSLALNNRHLASFTLS 236 (802)
T ss_dssp HTTCCCCCC------------CCCCSSCSSHHHHHHHHHHHHHHHHHHHHHHHCCC--CCBCEEEEECTTSCEEEEEC--
T ss_pred HhhCcCCchhhhhcccccccccccccccCCHHHHHHHHHHHHHHHHHhhhhhhhHhhccCceEeeeccCCCeEEEEEEec
Confidence 42 433333333 3346778889999999999999999999753221112233445555432 3 45578889
Q ss_pred CCCCCCCCCCCCCEEEEEecCCC-CCccEEEEEEEEeC---cEEEEEECCCcccc-CCCCCcEEEEEEechhhHHHHHHH
Q 002841 282 GLAERRPSLVNGDFIFAKHAYED-TSSAYQGFIHRVEA---DEVHLKFASDFQLN-HRDENLYNVQFTYNRVNMRRLYQA 356 (874)
Q Consensus 282 gl~e~rps~~~GD~v~~~~~~~~-~~~~~~g~v~~v~~---~~v~l~~~~~~~~~-~~~~~~~~v~f~~~r~~~~r~~~A 356 (874)
++++.++++..||.|+++..... ....+.|+|+++.. ++|.+.++...... ......|.++|.+++++++||+.|
T Consensus 237 ~~~~~~~~~~~GD~v~l~~~~~~~~~~~~~g~V~~v~~~~~~~v~v~~~~~~~~~p~~~~~~~~v~~~~~~~~~~r~~~A 316 (802)
T 2xzl_A 237 TFESNELKVAIGDEMILWYSGMQHPDWEGRGYIVRLPNSFQDTFTLELKPSKTPPPTHLTTGFTAEFIWKGTSYDRMQDA 316 (802)
T ss_dssp -------CCCTTCEEEEEECSSSSSCEEEEEEEEECCC---CCEEEEECCCSSCCCTTCCSSEEEEECCCCHHHHHHHHH
T ss_pred ccccCCCCCCCCCEEEEEECCCCCCceeEEEEEEEECCCCCCEEEEEEeCCCCCCccccCCCeEEEEEecCchHHHHHHH
Confidence 99999999999999999876422 22357899999974 67999997543221 112345999999999999999999
Q ss_pred hHHHhhcc-------cccccCCCCCCccc--cccCCC-CcCCCCCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHH
Q 002841 357 TDAAQELD-------TEFLFPSESSGIRL--IESNTL-VPISCNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLV 426 (874)
Q Consensus 357 l~~~~~~~-------~~~lfP~~~~~~~~--~~~~~~-~~~~~~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlv 426 (874)
++...... ...++......... .....+ .+....||++|++||..++.. ++++|+||||||||+|++
T Consensus 317 L~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~lp~~~~~~~~~~Ln~~Q~~Av~~~l~~---~~~lI~GppGTGKT~~i~ 393 (802)
T 2xzl_A 317 LKKFAIDKKSISGYLYYKILGHQVVDISFDVPLPKEFSIPNFAQLNSSQSNAVSHVLQR---PLSLIQGPPGTGKTVTSA 393 (802)
T ss_dssp HHHHHHCTTSBCHHHHHHHHTCCCCCCCCCCCCCSCCSCTTSCCCCHHHHHHHHHHTTC---SEEEEECSTTSSHHHHHH
T ss_pred HHHHHhccccchhHHHHHhcCCccccccccccCcccccccccccCCHHHHHHHHHHhcC---CCEEEECCCCCCHHHHHH
Confidence 98653211 11222221100000 000111 123467999999999999864 568999999999999999
Q ss_pred HHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHhcccccccccccEEEecCCCCCCcCCchhhh-----------------
Q 002841 427 EAILQLYATREDARLLVCAPSNSAADHLLEKILGEKAVEVRENEIFRLNAPSRPYEDVNADHI----------------- 489 (874)
Q Consensus 427 e~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~~~~~~~~~~~~i~Rl~~~~r~~~~v~~~~~----------------- 489 (874)
+++.++++. ++.+||+|||||.|||+|++||.+. ...++|++...+.. +.....
T Consensus 394 ~~i~~l~~~-~~~~ILv~a~tn~A~d~l~~rL~~~------g~~ilR~g~~~r~~--i~~~~~~~tl~~~~~~~~~~~l~ 464 (802)
T 2xzl_A 394 TIVYHLSKI-HKDRILVCAPSNVAVDHLAAKLRDL------GLKVVRLTAKSRED--VESSVSNLALHNLVGRGAKGELK 464 (802)
T ss_dssp HHHHHHHHH-HCCCEEEEESSHHHHHHHHHHHHHT------TCCEEECCCGGGTT--SCCTTGGGBHHHHHHTTCCTHHH
T ss_pred HHHHHHHhC-CCCeEEEEcCcHHHHHHHHHHHHhh------CccEEeecccchhh--hcchhhhhhHHHHHHhhcHHHHH
Confidence 999988764 5689999999999999999999863 12578887654321 110000
Q ss_pred hhcc-------cc---chhcc----CCchhhcccceEEEEechhhhhhhhcccCCCCccEEEEEcCCCCChhhhHHHhhc
Q 002841 490 RFCF-------FD---EQIFK----CPPLAALVCYRIIISTYMSASLIYAEGVDRGHFSHIFLDEAGQASEPESMVPISS 555 (874)
Q Consensus 490 ~~~~-------~~---~~~~~----~~~~~~L~~~~VI~~T~~sa~~l~~~~~~~~~fd~ViIDEAsQ~~epe~li~L~~ 555 (874)
++.. .. ...+. ......+..++||++|+.+++. ..+.. +||+||||||+|+++|+.++++..
T Consensus 465 ~l~~~~~~~~~ls~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~~~---~~L~~-~fd~viIDEA~q~~e~~~li~l~~ 540 (802)
T 2xzl_A 465 NLLKLKDEVGELSASDTKRFVKLVRKTEAEILNKADVVCCTCVGAGD---KRLDT-KFRTVLIDESTQASEPECLIPIVK 540 (802)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTCSEEEEETTGGGC---TTCCS-CCSEEEETTGGGSCHHHHHHHHTT
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhccCCEEEechhhcCh---HHHhc-cCCEEEEECccccchHHHHHHHHh
Confidence 0000 00 00000 0112446789999999988763 22333 899999999999999998888763
Q ss_pred cccCCcEEEEecCCCcccceeecchhhhcCCCccHHHHHHhcCCCCCCCccceeecccccCCchhhhccccccccccccc
Q 002841 556 YCKKDTVVVLAGDPMQLGPVIYSREAETYGMGKSYLERLFECEPYCHGNENYVTKLVRNYRSHPQILHLPSKLFYEEELI 635 (874)
Q Consensus 556 l~~~~~~vVLvGDp~QL~PvI~s~~a~~~gl~~SlfeRL~~~~~~~~~~~~~~~~L~~nYRshp~I~~~~n~~fY~~~L~ 635 (874)
...++||+|||+||||++++..+...|++.|+|+|+..... ..++|.+||||||+|++|+|.+||+|+|.
T Consensus 541 ---~~~~lilvGD~~QL~pvv~s~~a~~~gl~~slferl~~~~~-------~~~~L~~qYRm~p~I~~f~n~~fY~g~L~ 610 (802)
T 2xzl_A 541 ---GAKQVILVGDHQQLGPVILERKAADAGLKQSLFERLISLGH-------VPIRLEVQYRMNPYLSEFPSNMFYEGSLQ 610 (802)
T ss_dssp ---TBSEEEEEECTTSCCCCCCCHHHHHTTTTCCHHHHHHHTTC-------CCEECCEECSSCHHHHHHHHHHHSTTCCE
T ss_pred ---CCCEEEEEeCccccCCeechhhhhhcCCchhHHHHHHhcCC-------CceEeeeecCCChHHHHHHHHHhcCCccc
Confidence 23579999999999999999988889999999999986432 24689999999999999999999999998
Q ss_pred ccccccccccccc-cCCCCCCCCEEEEecCCCccccCCCCCccCHHHHHHHHHHHHHHHHcCCCCCCeEEEEcccHHHHH
Q 002841 636 ACKDESISCTAYL-NFLPNKEFPVLFFGIQGCDEREGSNPSWFNRIEVSKVVEIIQKLTSTGNLSEEDIGVITPYRQQVL 714 (874)
Q Consensus 636 ~~~~~~~~~~~~~-~~~~~~~~pi~f~~v~g~~~~~~~s~S~~N~~Ea~~V~~~v~~L~~~~~~~~~dIgIItPY~~Qv~ 714 (874)
.......+..... ..++....|++|+++.|.++....+.|+.|..||+.|+++++.|++.| +++++|||||||++|+.
T Consensus 611 ~~~~~~~r~~~~~~~~~~~~~~p~~f~~~~g~~~~~~~~~s~~N~~EA~~V~~~v~~L~~~g-~~~~~IgVItpy~~Q~~ 689 (802)
T 2xzl_A 611 NGVTIEQRTVPNSKFPWPIRGIPMMFWANYGREEISANGTSFLNRIEAMNCERIITKLFRDG-VKPEQIGVITPYEGQRA 689 (802)
T ss_dssp ESSCTTTTCCTTCCCCCSSTTCCEEEEECCCCCEECTTSSSEECHHHHHHHHHHHHHHHHTT-CCGGGEEEEESCHHHHH
T ss_pred cCCchhhhccccccCCCCCCCCCEEEEEcCCceeecCCCCCcCCHHHHHHHHHHHHHHHHcC-CCcccEEEEcccHHHHH
Confidence 7654322221111 123445679999999998877778889999999999999999999875 88999999999999999
Q ss_pred HHHHHHHhcCC------CCeEECccccCCCceeeEEEEEeccCCCcCCccccccccccCCCCCceEeccccccccEEEEE
Q 002841 715 KLNKALESLYM------PDIKVGSVEQFQGQERQVIIVSTVRSTIKHNDFDRKHCLGFLSNPRRFNVAVTRAISLLIIIG 788 (874)
Q Consensus 715 ~Ir~~L~~~~~------~~v~V~TVd~fQG~E~dvVIiS~VRs~~~~~~~d~~~~lGFl~d~rrlNVAiTRAK~~LiIvG 788 (874)
.|++.|...+. .+++|+|||+|||+|+|+||+|+||++. ...+||+.++||||||+||||.+|+|||
T Consensus 690 ~I~~~L~~~~~l~~~~~~~v~V~TVd~fQG~E~dvVIlS~vrs~~-------~~~~gfl~d~rrLNVAlTRAk~~LiIvg 762 (802)
T 2xzl_A 690 YILQYMQMNGSLDKDLYIKVEVASVDAFQGREKDYIILSCVRANE-------QQAIGFLRDPRRLNVGLTRAKYGLVILG 762 (802)
T ss_dssp HHHHHHHHHCSSCHHHHHTSEEEEHHHHTTCCEEEEEEECCCCCT-------TCCCGGGGCHHHHHHHHSSEEEEEEEEE
T ss_pred HHHHHHHHccccccccccceEEcchhhcCCCccCEEEEEeccCCC-------CCCcccccCccceeeeHhhhhCeEEEEE
Confidence 99999976542 4799999999999999999999999874 2578999999999999999999999999
Q ss_pred ccccccCChHHHHHHHHHHhCCCcccCCC
Q 002841 789 NPHIVSKDPYWHQLLWYCSDNNSYQGCAL 817 (874)
Q Consensus 789 n~~~L~~~~~w~~ll~~~~~~~~~~g~~~ 817 (874)
|+.+|++++.|+.|++||+++|++...++
T Consensus 763 ~~~~l~~~~~w~~ll~~~~~~~~~~~~~~ 791 (802)
T 2xzl_A 763 NPRSLARNTLWNHLLIHFREKGCLVEGTL 791 (802)
T ss_dssp CHHHHTTSHHHHHHHHHHHHHTCEEEEET
T ss_pred CHHHhccChHHHHHHHHHHHcCCeecCCH
Confidence 99999999999999999999999876543
No 4
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=100.00 E-value=1.7e-73 Score=683.42 Aligned_cols=558 Identities=29% Similarity=0.414 Sum_probs=410.3
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccccccEEEEe----C-cEEEEEecCCCCCCCCCCCCCEEEEEecCCC
Q 002841 230 AITDGLTLKNYTSFFKTLLIMEEIQLKEDMRAYDMENVTLMRK----G-LYLSLVVPGLAERRPSLVNGDFIFAKHAYED 304 (874)
Q Consensus 230 ~l~~~l~~~~Y~~~f~~Ll~lEe~~~~~~~~~~~~~~~~~~~~----~-~~~~l~vpgl~e~rps~~~GD~v~~~~~~~~ 304 (874)
++..+-+..+|.++|.+||.+|+.............++.++.. + ....+.+|+ .+.++++..||.|+++.....
T Consensus 2 ~~~~~~~~~~y~~~~~~ll~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Gd~v~l~~~~~~ 80 (624)
T 2gk6_A 2 LGSRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPK-TDSDMRLMQGDEICLRYKGDL 80 (624)
T ss_dssp -CCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEECEEEEECTTSCEEEEEECC--------CCTTCEEEEEECSSS
T ss_pred cCCccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhccCceEEeeecCCCceEEEEEecc-cccCCcCCCCCEEEEEECCCC
Confidence 3456778999999999999999753221112223345555432 3 344677887 788889999999999876422
Q ss_pred -CCccEEEEEEEEeC---cEEEEEECCCccccCCCCCcEEEEEEechhhHHHHHHHhHHHhhc---c----cccccCCCC
Q 002841 305 -TSSAYQGFIHRVEA---DEVHLKFASDFQLNHRDENLYNVQFTYNRVNMRRLYQATDAAQEL---D----TEFLFPSES 373 (874)
Q Consensus 305 -~~~~~~g~v~~v~~---~~v~l~~~~~~~~~~~~~~~~~v~f~~~r~~~~r~~~Al~~~~~~---~----~~~lfP~~~ 373 (874)
....+.|+|+++.. ++|.|.|+............|.++|.+++++++||+.||+..... . ...++....
T Consensus 81 ~~~~~~~g~v~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~~~~~~~~~~~~~~ll~~~~ 160 (624)
T 2gk6_A 81 APLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEV 160 (624)
T ss_dssp SCCCEEEEEEEECSCSSCSEEEEEESCCTTCCCSCCSSEEEEECCCCHHHHHHHHHHHHHHHCTTSBCSHHHHHHTTCCC
T ss_pred CCCcEEEEEEEEecCCCCCEEEEEEccCCCCccccccceEEEEEeCCchHHHHHHHHHHHHhccccchHHHHHHhcCCCC
Confidence 23357899999975 789999975432222224469999999999999999999765321 1 112232211
Q ss_pred CCc--cccccCCC-CcCCCCCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHH
Q 002841 374 SGI--RLIESNTL-VPISCNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSA 450 (874)
Q Consensus 374 ~~~--~~~~~~~~-~~~~~~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsA 450 (874)
... ....+..+ .+....||++|++||..++.. ++++|+||||||||+|+++++.++++. ++.+||+|||||.|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~ln~~Q~~av~~~l~~---~~~li~GppGTGKT~~~~~~i~~l~~~-~~~~ilv~a~tn~A 236 (624)
T 2gk6_A 161 EDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQR---PLSLIQGPPGTGKTVTSATIVYHLARQ-GNGPVLVCAPSNIA 236 (624)
T ss_dssp CCCCCCCCCCSCCSCTTSCCCCHHHHHHHHHHHTC---SEEEEECCTTSCHHHHHHHHHHHHHTS-SSCCEEEEESSHHH
T ss_pred ccccccccCcccccccccCCCCHHHHHHHHHHhcC---CCeEEECCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCcHHH
Confidence 100 00001111 123367999999999999864 568999999999999999999888753 57899999999999
Q ss_pred HHHHHHHHhcccccccccccEEEecCCCCCCcC-------Cch---------hhhhhccccc----------hhcc----
Q 002841 451 ADHLLEKILGEKAVEVRENEIFRLNAPSRPYED-------VNA---------DHIRFCFFDE----------QIFK---- 500 (874)
Q Consensus 451 aD~l~~rL~~~~~~~~~~~~i~Rl~~~~r~~~~-------v~~---------~~~~~~~~~~----------~~~~---- 500 (874)
||++++|+.+. ...++|+++..+..-. ++. .+.++....+ ..+.
T Consensus 237 ~~~l~~~l~~~------~~~~~R~~~~~r~~~~~~~~~~tl~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 310 (624)
T 2gk6_A 237 VDQLTEKIHQT------GLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKR 310 (624)
T ss_dssp HHHHHHHHHTT------TCCEEECCCTGGGSCCCTTTTTBHHHHHTSCSSCHHHHHHHTTCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc------CCeEEeeccccchhhccchhhhhHHHHHHhccchHHHHHHHHHHHhhcccCHHHHHHHHHHHH
Confidence 99999999863 1247888876442100 000 0000000000 0000
Q ss_pred CCchhhcccceEEEEechhhhhhhhcccCCCCccEEEEEcCCCCChhhhHHHhhccccCCcEEEEecCCCcccceeecch
Q 002841 501 CPPLAALVCYRIIISTYMSASLIYAEGVDRGHFSHIFLDEAGQASEPESMVPISSYCKKDTVVVLAGDPMQLGPVIYSRE 580 (874)
Q Consensus 501 ~~~~~~L~~~~VI~~T~~sa~~l~~~~~~~~~fd~ViIDEAsQ~~epe~li~L~~l~~~~~~vVLvGDp~QL~PvI~s~~ 580 (874)
......+..++||++||.+++.. .+...+||+||||||+|+++|++++++... ..++||+|||+||||++++..
T Consensus 311 ~~~~~~l~~~~vI~~T~~~~~~~---~l~~~~fd~viIDEAsQ~~e~~~li~l~~~---~~~~ilvGD~~QL~p~v~~~~ 384 (624)
T 2gk6_A 311 TAERELLMNADVICCTCVGAGDP---RLAKMQFRSILIDESTQATEPECMVPVVLG---AKQLILVGDHCQLGPVVMCKK 384 (624)
T ss_dssp HHHHHHHHTCSEEEEETGGGGCG---GGTTCCCSEEEETTGGGSCHHHHHHHHTTT---BSEEEEEECTTSCCCCCSCHH
T ss_pred HHHHHHHhcCCEEEEcChhhcch---hhhcCCCCEEEEecccccCcHHHHHHHHhc---CCeEEEecChhccCCeeecHH
Confidence 00123477899999999987642 234568999999999999999998888742 357999999999999999998
Q ss_pred hhhcCCCccHHHHHHhcCCCCCCCccceeecccccCCchhhhccccccccccccccccccccccccc-ccCCCCCCCCEE
Q 002841 581 AETYGMGKSYLERLFECEPYCHGNENYVTKLVRNYRSHPQILHLPSKLFYEEELIACKDESISCTAY-LNFLPNKEFPVL 659 (874)
Q Consensus 581 a~~~gl~~SlfeRL~~~~~~~~~~~~~~~~L~~nYRshp~I~~~~n~~fY~~~L~~~~~~~~~~~~~-~~~~~~~~~pi~ 659 (874)
+...|++.|+|+||...+. ..++|.+||||||+|++|+|.+||+++|........+.... ...++....|++
T Consensus 385 ~~~~gl~~Slferl~~~~~-------~~~~L~~qYR~~~~I~~~~n~~fY~~~L~~~~~~~~r~~~~~~~~~~~~~~p~~ 457 (624)
T 2gk6_A 385 AAKAGLSQSLFERLVVLGI-------RPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMF 457 (624)
T ss_dssp HHHHTTTSCHHHHHHHTTC-------CCEECCEECSSCHHHHHHHHHHHSTTCCEESSCTGGGCCTTCCCCCSSTTCCEE
T ss_pred HHHcCCchhHHHHHHhcCC-------CcEEehhhhCcChhHHhhhHHhhcCcccccCCchhhhcccccCCCCCCCCCCEE
Confidence 8888999999999986432 24689999999999999999999999987654432221111 112345568999
Q ss_pred EEecCCCccccCCCCCccCHHHHHHHHHHHHHHHHcCCCCCCeEEEEcccHHHHHHHHHHHHhcCC------CCeEECcc
Q 002841 660 FFGIQGCDEREGSNPSWFNRIEVSKVVEIIQKLTSTGNLSEEDIGVITPYRQQVLKLNKALESLYM------PDIKVGSV 733 (874)
Q Consensus 660 f~~v~g~~~~~~~s~S~~N~~Ea~~V~~~v~~L~~~~~~~~~dIgIItPY~~Qv~~Ir~~L~~~~~------~~v~V~TV 733 (874)
|+++.|.++....+.|+.|..||..|++++..|++.| +++.+|||||||++|+..|++.|...+. .++.|+||
T Consensus 458 ~~~~~g~~~~~~~~~s~~N~~Ea~~v~~~v~~l~~~g-~~~~dIgVItpy~~Q~~~i~~~l~~~~~~~~~~~~~v~v~TV 536 (624)
T 2gk6_A 458 FYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAG-AKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASV 536 (624)
T ss_dssp EEECCCCEECCTTSSCCEEHHHHHHHHHHHHHHHTTT-CCGGGEEEECSCHHHHHHHHHHHHHSCSSCHHHHHHSEEECH
T ss_pred EEEcCCcceecCCCCCccCHHHHHHHHHHHHHHHHcC-CCCCeEEEEcCCHHHHHHHHHHHHhhccccccccCceEEech
Confidence 9999998877777889999999999999999998875 8899999999999999999999976542 36899999
Q ss_pred ccCCCceeeEEEEEeccCCCcCCccccccccccCCCCCceEeccccccccEEEEEccccccCChHHHHHHHHHHhCCCcc
Q 002841 734 EQFQGQERQVIIVSTVRSTIKHNDFDRKHCLGFLSNPRRFNVAVTRAISLLIIIGNPHIVSKDPYWHQLLWYCSDNNSYQ 813 (874)
Q Consensus 734 d~fQG~E~dvVIiS~VRs~~~~~~~d~~~~lGFl~d~rrlNVAiTRAK~~LiIvGn~~~L~~~~~w~~ll~~~~~~~~~~ 813 (874)
|+|||+|+|+||+|+||++. ..++||+.|+||||||+||||.+|+||||+.+|+.++.|+.|++||+++|++.
T Consensus 537 d~fQG~E~dvVIls~vrs~~-------~~~~gfl~~~~rlnVAlTRAk~~L~ivg~~~~l~~~~~~~~li~~~~~~~~~~ 609 (624)
T 2gk6_A 537 DAFQGREKDFIILSCVRANE-------HQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLV 609 (624)
T ss_dssp HHHTTCCEEEEEEEECC-------------CCTTTCHHHHHHHTTSEEEEEEEEECHHHHTTSHHHHHHHHHHHHTTCCC
T ss_pred hhcCCcccCEEEEEeecCCC-------CCCccccCCcceeeeehhhhhCcEEEEECHHHHccChHHHHHHHHHHHCCCEE
Confidence 99999999999999999974 25689999999999999999999999999999999999999999999999998
Q ss_pred cCCCCc
Q 002841 814 GCALPE 819 (874)
Q Consensus 814 g~~~p~ 819 (874)
..++..
T Consensus 610 ~~~~~~ 615 (624)
T 2gk6_A 610 EGPLNN 615 (624)
T ss_dssp CSCGGG
T ss_pred eCCHHH
Confidence 765443
No 5
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=99.97 E-value=3.2e-30 Score=310.52 Aligned_cols=288 Identities=18% Similarity=0.191 Sum_probs=177.1
Q ss_pred CCCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhc--CCCeEEEecCCHHHHHHHHHHHhccccccc
Q 002841 389 CNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATR--EDARLLVCAPSNSAADHLLEKILGEKAVEV 466 (874)
Q Consensus 389 ~~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~--~~~rILv~ApSNsAaD~l~~rL~~~~~~~~ 466 (874)
..||++|++||... .+|++|.||||||||+|++++|++++... ++.+||++||||.||+++.+|+.+..+...
T Consensus 8 ~~Ln~~Q~~av~~~-----~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~~~ 82 (647)
T 3lfu_A 8 DSLNDKQREAVAAP-----RSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTSQ 82 (647)
T ss_dssp TTCCHHHHHHHTCC-----SSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCSCC
T ss_pred hcCCHHHHHHHhCC-----CCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhcccc
Confidence 57999999999732 26799999999999999999999999853 567999999999999999999986321111
Q ss_pred ccccEEEecCCCC-------CCcCCc------hhhhhhccccchhccC-------Cch----------------hhccc-
Q 002841 467 RENEIFRLNAPSR-------PYEDVN------ADHIRFCFFDEQIFKC-------PPL----------------AALVC- 509 (874)
Q Consensus 467 ~~~~i~Rl~~~~r-------~~~~v~------~~~~~~~~~~~~~~~~-------~~~----------------~~L~~- 509 (874)
....+..+..... .....+ ........+.+..... +.. +.+..
T Consensus 83 ~~~~v~Tfhs~~~~il~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~~~~~~~~~ 162 (647)
T 3lfu_A 83 GGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLKRLIKAMNLDEKQWPPRQAMWYINSQKDEGLRPHHIQSY 162 (647)
T ss_dssp TTCEEEEHHHHHHHHHHHTTGGGTCCTTCEEECHHHHHHHHHHHHHHTTCCTTTSCHHHHHHHHHHHHHTTCCCCCC---
T ss_pred CCcEEEcHHHHHHHHHHHHHHHhCCCCCCEEeCHHHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHcCCCHHHHHhc
Confidence 1111111111000 000000 0001111110000000 000 00000
Q ss_pred ---------------------ceEEEEe-ch-hhhhhhhc--cc---CCCCccEEEEEcCCCCChhhhHHHhhccccCCc
Q 002841 510 ---------------------YRIIIST-YM-SASLIYAE--GV---DRGHFSHIFLDEAGQASEPESMVPISSYCKKDT 561 (874)
Q Consensus 510 ---------------------~~VI~~T-~~-sa~~l~~~--~~---~~~~fd~ViIDEAsQ~~epe~li~L~~l~~~~~ 561 (874)
...+-.. +. .+..+... .+ ...+|+||+|||+ |++.|..+..|..++..+.
T Consensus 163 ~~~~~~~~~~i~~~y~~~~~~~~~~df~dl~~~~~~~l~~~~~~~~~~~~~~~~ilVDE~-QD~~~~q~~ll~~l~~~~~ 241 (647)
T 3lfu_A 163 GNPVEQTWQKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEF-QDTNNIQYAWIRLLAGDTG 241 (647)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHTEEEHHHHHHHHHHHHHHCHHHHHHHHHHCCEEEESSG-GGCCHHHHHHHHHHHTTTC
T ss_pred cchHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCHHHHHHHHhhCCEEEEECc-ccCCHHHHHHHHHHhcCCC
Confidence 0000000 00 00000000 00 0125999999999 8888888888887877778
Q ss_pred EEEEecCCCcccceeecchhhhcCCCccHHHHHHhcCCCCCCCccceeecccccCCchhhhccccccccccccccccccc
Q 002841 562 VVVLAGDPMQLGPVIYSREAETYGMGKSYLERLFECEPYCHGNENYVTKLVRNYRSHPQILHLPSKLFYEEELIACKDES 641 (874)
Q Consensus 562 ~vVLvGDp~QL~PvI~s~~a~~~gl~~SlfeRL~~~~~~~~~~~~~~~~L~~nYRshp~I~~~~n~~fY~~~L~~~~~~~ 641 (874)
++++|||++| .||++. |.+...|.++....+ ....+.|..||||++.|++++|.+|+.+.......
T Consensus 242 ~l~~vGD~~Q---sIy~fr----ga~~~~~~~~~~~~~-----~~~~~~L~~nyRs~~~I~~~~n~~~~~~~~~~~~~-- 307 (647)
T 3lfu_A 242 KVMIVGDDDQ---SIYGWR----GAQVENIQRFLNDFP-----GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK-- 307 (647)
T ss_dssp EEEEEECGGG---CCCGGG----TCCTTHHHHHHHHCT-----TCEEEEECBCSSSCHHHHHHHHHHHTTCSSCCCCC--
T ss_pred EEEEEcCchh---hhcccc----CCCHHHHHHHHHhCC-----CCeEEEcccCCCCCHHHHHHHHHHHHhcccccCCc--
Confidence 8999999999 999887 566777877765422 22467899999999999999999998754221110
Q ss_pred ccccccccCCCCCCCCEEEEecCCCccccCCCCCccCHHHHHHHHHHHHHHHHcCCCCCCeEEEEcccHHHHHH
Q 002841 642 ISCTAYLNFLPNKEFPVLFFGIQGCDEREGSNPSWFNRIEVSKVVEIIQKLTSTGNLSEEDIGVITPYRQQVLK 715 (874)
Q Consensus 642 ~~~~~~~~~~~~~~~pi~f~~v~g~~~~~~~s~S~~N~~Ea~~V~~~v~~L~~~~~~~~~dIgIItPY~~Qv~~ 715 (874)
.+.. ...+.++.++.... ...|+..|++.|..++..| ++++||+||++++.|...
T Consensus 308 -----~~~~-~~~~~~~~~~~~~~------------~~~e~~~ia~~I~~l~~~g-~~~~diaVL~r~~~~~~~ 362 (647)
T 3lfu_A 308 -----LWTD-GADGEPISLYCAFN------------ELDEARFVVNRIKTWQDNG-GALAECAILYRSNAQSRV 362 (647)
T ss_dssp -----CBCS-SCCCCCEEEEEEEE------------HHHHHHHHHHHHHHHHHTT-CCGGGEEEEESSGGGHHH
T ss_pred -----cccC-CCCCCceEEEecCC------------hHHHHHHHHHHHHHHHHcC-CCccCEEEEEeCchhHHH
Confidence 0111 11223455544321 3479999999999999875 899999999998766543
No 6
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=99.96 E-value=1.7e-28 Score=289.80 Aligned_cols=291 Identities=22% Similarity=0.225 Sum_probs=189.6
Q ss_pred CCcCCCCCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHhcccc
Q 002841 384 LVPISCNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILGEKA 463 (874)
Q Consensus 384 ~~~~~~~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~~~~~ 463 (874)
+.++...||++|++|+..++.. +.++|.||||||||+++..++..+.. .+.+|+++|||+.||+.+.+++...
T Consensus 183 l~~~~~~L~~~Q~~Av~~~~~~---~~~~I~G~pGTGKTt~i~~l~~~l~~--~g~~Vl~~ApT~~Aa~~L~e~~~~~-- 255 (574)
T 3e1s_A 183 PKKARKGLSEEQASVLDQLAGH---RLVVLTGGPGTGKSTTTKAVADLAES--LGLEVGLCAPTGKAARRLGEVTGRT-- 255 (574)
T ss_dssp CTTTTTTCCHHHHHHHHHHTTC---SEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHHTSC--
T ss_pred HHhhcCCCCHHHHHHHHHHHhC---CEEEEEcCCCCCHHHHHHHHHHHHHh--cCCeEEEecCcHHHHHHhHhhhccc--
Confidence 4444678999999999999864 56899999999999999887766654 5689999999999999999887421
Q ss_pred cccccccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhhhcccCCCCccEEEEEcCCC
Q 002841 464 VEVRENEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYAEGVDRGHFSHIFLDEAGQ 543 (874)
Q Consensus 464 ~~~~~~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~~~~~~~~~fd~ViIDEAsQ 543 (874)
...+.++.... +. . +. ........+|+||||||++
T Consensus 256 ----a~Tih~ll~~~-------~~--~--------~~------------------------~~~~~~~~~dvlIIDEasm 290 (574)
T 3e1s_A 256 ----ASTVHRLLGYG-------PQ--G--------FR------------------------HNHLEPAPYDLLIVDEVSM 290 (574)
T ss_dssp ----EEEHHHHTTEE-------TT--E--------ES------------------------CSSSSCCSCSEEEECCGGG
T ss_pred ----HHHHHHHHcCC-------cc--h--------hh------------------------hhhcccccCCEEEEcCccC
Confidence 11111111000 00 0 00 0011223789999999988
Q ss_pred CChhhhHHHhhccccCCcEEEEecCCCcccceeecchhhhcCCCccHHHHHHhcCCCCCCCccceeecccccCCc--hhh
Q 002841 544 ASEPESMVPISSYCKKDTVVVLAGDPMQLGPVIYSREAETYGMGKSYLERLFECEPYCHGNENYVTKLVRNYRSH--PQI 621 (874)
Q Consensus 544 ~~epe~li~L~~l~~~~~~vVLvGDp~QL~PvI~s~~a~~~gl~~SlfeRL~~~~~~~~~~~~~~~~L~~nYRsh--p~I 621 (874)
.....+...+. ....++++|++||+.||||+..+ +.|..+... ...+.|+++||++ +.|
T Consensus 291 l~~~~~~~Ll~-~~~~~~~lilvGD~~QL~~v~~g----------~~~~~l~~~--------~~~~~L~~~~R~~~~s~I 351 (574)
T 3e1s_A 291 MGDALMLSLLA-AVPPGARVLLVGDTDQLPPVDAG----------LPLLALAQA--------APTIKLTQVYRQAAKNPI 351 (574)
T ss_dssp CCHHHHHHHHT-TSCTTCEEEEEECTTSCCCSSSC----------CHHHHHHHH--------SCEEECCCCCHHHHTCHH
T ss_pred CCHHHHHHHHH-hCcCCCEEEEEecccccCCccCC----------cHHHHHHhc--------CCEEEcceeEeCCCccHH
Confidence 88765444444 44567799999999999997442 345555541 1378899999998 669
Q ss_pred hcccccccccccccccccccccccccccCCCCCCCCEEEEecCCCccccCCCCCccCHHHHHHHHHHHHHHHHcCCCCC-
Q 002841 622 LHLPSKLFYEEELIACKDESISCTAYLNFLPNKEFPVLFFGIQGCDEREGSNPSWFNRIEVSKVVEIIQKLTSTGNLSE- 700 (874)
Q Consensus 622 ~~~~n~~fY~~~L~~~~~~~~~~~~~~~~~~~~~~pi~f~~v~g~~~~~~~s~S~~N~~Ea~~V~~~v~~L~~~~~~~~- 700 (874)
..+++.+ ..|.+.... ..+.|+.....+ ..+..+.+.+. + +.+
T Consensus 352 ~~~a~~i-~~g~~~~~~-----------------~d~~~~~~~~~~------------~~~~~i~~~~~-----~-~~~~ 395 (574)
T 3e1s_A 352 IQAAHGL-LHGEAPAWG-----------------DKRLNLTEIEPD------------GGARRVALMVR-----E-LGGP 395 (574)
T ss_dssp HHHHHHH-HTTCCCCCC-----------------BTTEEEEECCST------------TCHHHHHHHHH-----H-TTSG
T ss_pred HHHHHHH-hCCCCcccC-----------------CCeEEEeCCCHH------------HHHHHHHHHHh-----c-cCcc
Confidence 8887653 344322110 123343321111 11333444333 2 344
Q ss_pred CeEEEEcccHHH---HHHHHHHHHhc----C--------------------------C-------------CCeE-----
Q 002841 701 EDIGVITPYRQQ---VLKLNKALESL----Y--------------------------M-------------PDIK----- 729 (874)
Q Consensus 701 ~dIgIItPY~~Q---v~~Ir~~L~~~----~--------------------------~-------------~~v~----- 729 (874)
.++.|+||.+.. +..+...+.+. . + ..+.
T Consensus 396 ~~~~VL~~~~~g~~gv~~lN~~l~~~lnp~~~~~~~~~~~~~~Gd~V~~~~N~~~~~v~NGdiG~i~~~~~~~l~v~fdg 475 (574)
T 3e1s_A 396 GAVQVLTPMRKGPLGMDHLNYHLQALFNPGEGGVRIAEGEARPGDTVVQTKNDYNNEIFNGTLGMVLKAEGARLTVDFDG 475 (574)
T ss_dssp GGCEEEESCSSSTTSHHHHHHHHHHHHSCCSCCEECSSSEECTTCEEEECSCBTTTTBCTTCEEEEEEECSSCEEEEETT
T ss_pred cCeEEEEeecCCchhHHHHHHHHHHHhCCCCCceeeCCeEEecCCEEEEeecCcccceecCceeEEEcCCCCEEEEEECC
Confidence 788888887754 44443333221 0 0 0011
Q ss_pred -----------------ECccccCCCceeeEEEEEeccCCCcCCccccccccccCCCCCceEeccccccccEEEEEcccc
Q 002841 730 -----------------VGSVEQFQGQERQVIIVSTVRSTIKHNDFDRKHCLGFLSNPRRFNVAVTRAISLLIIIGNPHI 792 (874)
Q Consensus 730 -----------------V~TVd~fQG~E~dvVIiS~VRs~~~~~~~d~~~~lGFl~d~rrlNVAiTRAK~~LiIvGn~~~ 792 (874)
+.|||++||+|+|.||+....+. ..+.+++++||||||||+.|+|+|++..
T Consensus 476 ~~v~~~~~~l~~~~~ayA~TIHksQGsEfd~Vil~l~~~~------------~~~l~r~LlYvAiTRAk~~l~lvg~~~~ 543 (574)
T 3e1s_A 476 NVVELTGAELFNLQLGYALTVHRAQGSEWGTVLGVLHEAH------------MPMLSRNLVYTALTRARDRFFSAGSASA 543 (574)
T ss_dssp EEEEECGGGGTTEEECSEEEHHHHTTCCEEEEEEEECGGG------------GGGCCHHHHHHHHHTEEEEEEEEECHHH
T ss_pred eEEEEchHHhhhhhheeeeeHHHhCCccCCeEEEEcCCcc------------ccccccceEEEEeeeeeeEEEEEECHHH
Confidence 25999999999999999876542 2345678999999999999999999865
Q ss_pred c
Q 002841 793 V 793 (874)
Q Consensus 793 L 793 (874)
|
T Consensus 544 l 544 (574)
T 3e1s_A 544 W 544 (574)
T ss_dssp H
T ss_pred H
Confidence 4
No 7
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=99.95 E-value=1.3e-28 Score=299.60 Aligned_cols=288 Identities=19% Similarity=0.228 Sum_probs=174.3
Q ss_pred CCCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhc--CCCeEEEecCCHHHHHHHHHHHhccccccc
Q 002841 389 CNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATR--EDARLLVCAPSNSAADHLLEKILGEKAVEV 466 (874)
Q Consensus 389 ~~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~--~~~rILv~ApSNsAaD~l~~rL~~~~~~~~ 466 (874)
..||++|++||.+. .+|++|.|+||||||+||+++|++++... ++.+||++||||+||++|.+|+....+...
T Consensus 10 ~~Ln~~Q~~av~~~-----~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~~ 84 (724)
T 1pjr_A 10 AHLNKEQQEAVRTT-----EGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGAA 84 (724)
T ss_dssp TTSCHHHHHHHHCC-----SSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGGGG
T ss_pred hhCCHHHHHHHhCC-----CCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhcccc
Confidence 46999999999862 25799999999999999999999999743 567999999999999999999976311111
Q ss_pred ccccEEEecCC--------------CCCCcCCch--------hhhhhccccchhc--------------cCCchhhc---
Q 002841 467 RENEIFRLNAP--------------SRPYEDVNA--------DHIRFCFFDEQIF--------------KCPPLAAL--- 507 (874)
Q Consensus 467 ~~~~i~Rl~~~--------------~r~~~~v~~--------~~~~~~~~~~~~~--------------~~~~~~~L--- 507 (874)
....+..+.+. .....-+.. .+.+-...+...+ .....+.+
T Consensus 85 ~~~~v~Tfhs~~~~ilr~~~~~~g~~~~f~i~d~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~~~~~~~~~ 164 (724)
T 1pjr_A 85 EDVWISTFHSMCVRILRRDIDRIGINRNFSILDPTDQLSVMKTILKEKNIDPKKFEPRTILGTISAAKNELLPPEQFAKR 164 (724)
T ss_dssp TTSEEEEHHHHHHHHHHHHGGGGTCCTTCEECCHHHHHHHHHHHHHTTSCTTTTCCHHHHHHHHHHHHHTTCCHHHHTTC
T ss_pred cCcEEeeHHHHHHHHHHHHHHHhCCCCCCEECCHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHHHHHHcCCCHHHHHHh
Confidence 11111111000 000000000 0000000000000 00000000
Q ss_pred --------------------ccceEEEEechh----hhhhhhc--cc---CCCCccEEEEEcCCCCChhhhHHHhhcccc
Q 002841 508 --------------------VCYRIIISTYMS----ASLIYAE--GV---DRGHFSHIFLDEAGQASEPESMVPISSYCK 558 (874)
Q Consensus 508 --------------------~~~~VI~~T~~s----a~~l~~~--~~---~~~~fd~ViIDEAsQ~~epe~li~L~~l~~ 558 (874)
.....+ +... +..+... .+ ...+|+||+|||+ |++.+..+..|..++.
T Consensus 165 ~~~~~~~~~~~iy~~Y~~~l~~~~~l--Df~Dll~~~~~ll~~~~~v~~~~~~rf~~IlVDEf-QDtn~~Q~~ll~~L~~ 241 (724)
T 1pjr_A 165 ASTYYEKVVSDVYQEYQQRLLRNHSL--DFDDLIMTTIQLFDRVPDVLHYYQYKFQYIHIDEY-QDTNRAQYTLVKKLAE 241 (724)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHTTEE--CTTHHHHHHHHHHHHCHHHHHHHHHHCSEEEESSG-GGCCHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHhhCHHHHHHHHhhCCEEEEEhH-hcCCHHHHHHHHHHHc
Confidence 000000 0000 0000000 00 1236999999999 8888888888877776
Q ss_pred CCcEEEEecCCCcccceeecchhhhcCCCccHHHHHHhcCCCCCCCccceeecccccCCchhhhcccccccccccccccc
Q 002841 559 KDTVVVLAGDPMQLGPVIYSREAETYGMGKSYLERLFECEPYCHGNENYVTKLVRNYRSHPQILHLPSKLFYEEELIACK 638 (874)
Q Consensus 559 ~~~~vVLvGDp~QL~PvI~s~~a~~~gl~~SlfeRL~~~~~~~~~~~~~~~~L~~nYRshp~I~~~~n~~fY~~~L~~~~ 638 (874)
...++++|||++| .||++. |.+...+.++....+ ....+.|.+||||++.|++++|.++.++......
T Consensus 242 ~~~~l~vVGD~~Q---sIY~fR----GA~~~~~~~f~~~~~-----~~~~i~L~~NyRSt~~Il~~an~li~~n~~~~~k 309 (724)
T 1pjr_A 242 RFQNICAVGDADQ---SIYRWR----GADIQNILSFERDYP-----NAKVILLEQNYRSTKRILQAANEVIEHNVNRKPK 309 (724)
T ss_dssp TTCCEEEEECGGG---CCCGGG----TCCTHHHHTHHHHST-----TCEEEEECBCSSSCHHHHHHHHHHHTTCSSCCCC
T ss_pred CCCeEEEEECchh---hccccc----CCCHHHHHHHHHHCC-----CCcEEECCCCCCCCHHHHHHHHHHHHhCccccCc
Confidence 6568999999999 999987 556666666654322 1246789999999999999999998765322111
Q ss_pred cccccccccccCCCCCCCCEEEEecCCCccccCCCCCccCHHHHHHHHHHHHHHHHcCCCCCCeEEEEcccHHHHHHH
Q 002841 639 DESISCTAYLNFLPNKEFPVLFFGIQGCDEREGSNPSWFNRIEVSKVVEIIQKLTSTGNLSEEDIGVITPYRQQVLKL 716 (874)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~pi~f~~v~g~~~~~~~s~S~~N~~Ea~~V~~~v~~L~~~~~~~~~dIgIItPY~~Qv~~I 716 (874)
. .|... ..+.++.++.... ...|+..|+..|.+++...+++++||+||++.+.|...|
T Consensus 310 ~-------l~~~~-~~g~~i~~~~~~~------------~~~Ea~~va~~I~~l~~~~g~~~~diAIL~R~~~~~~~l 367 (724)
T 1pjr_A 310 R-------IWTEN-PEGKPILYYEAMN------------EADEAQFVAGRIREAVERGERRYRDFAVLYRTNAQSRVM 367 (724)
T ss_dssp C-------CBCSS-CCCCCEEEEEEEE------------HHHHHHHHHHHHHHHHTTTSCCGGGEEEEESSGGGHHHH
T ss_pred c-------ccccc-CCCCceEEEecCC------------HHHHHHHHHHHHHHHHHhcCCChhheeeeeecchhHHHH
Confidence 0 11111 1223455544311 247899999999999874458899999999887765443
No 8
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=99.95 E-value=1.5e-27 Score=275.72 Aligned_cols=187 Identities=19% Similarity=0.213 Sum_probs=121.8
Q ss_pred CCCCHHHHHHHHHHhcc--CCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHhccccccc
Q 002841 389 CNLNEEQMCSIEKILGL--KGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILGEKAVEV 466 (874)
Q Consensus 389 ~~LN~~Q~~AV~~il~~--~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~~~~~~~~ 466 (874)
..||++|++|+..++.. .+.++++|.||||||||+++..++..+...+ ..+|+++||||.||+++.+++...
T Consensus 24 ~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~-~~~il~~a~T~~Aa~~l~~~~~~~----- 97 (459)
T 3upu_A 24 DDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTG-ETGIILAAPTHAAKKILSKLSGKE----- 97 (459)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTT-CCCEEEEESSHHHHHHHHHHHSSC-----
T ss_pred ccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcC-CceEEEecCcHHHHHHHHhhhccc-----
Confidence 57999999999988643 1114799999999999999999888887643 358999999999999999988421
Q ss_pred ccccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhhhcccCCCCccEEEEEcCCCCCh
Q 002841 467 RENEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYAEGVDRGHFSHIFLDEAGQASE 546 (874)
Q Consensus 467 ~~~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~~~~~~~~~fd~ViIDEAsQ~~e 546 (874)
...+.++. ....... .....+... .......+++||||||++..
T Consensus 98 -~~T~h~~~-----------------~~~~~~~--------~~~~~~~~~---------~~~~~~~~~~iiiDE~~~~~- 141 (459)
T 3upu_A 98 -ASTIHSIL-----------------KINPVTY--------EENVLFEQK---------EVPDLAKCRVLICDEVSMYD- 141 (459)
T ss_dssp -EEEHHHHH-----------------TEEEEEC--------SSCEEEEEC---------SCCCCSSCSEEEESCGGGCC-
T ss_pred -hhhHHHHh-----------------ccCcccc--------cccchhccc---------ccccccCCCEEEEECchhCC-
Confidence 00111100 0000000 000000000 01122469999999996655
Q ss_pred hhhHHHhhccccCCcEEEEecCCCcccceeecchhhhcCCCccHHHHHHhcCCCCCCCccceeecccccCCchhhhcccc
Q 002841 547 PESMVPISSYCKKDTVVVLAGDPMQLGPVIYSREAETYGMGKSYLERLFECEPYCHGNENYVTKLVRNYRSHPQILHLPS 626 (874)
Q Consensus 547 pe~li~L~~l~~~~~~vVLvGDp~QL~PvI~s~~a~~~gl~~SlfeRL~~~~~~~~~~~~~~~~L~~nYRshp~I~~~~n 626 (874)
+..+..|..+...+.+++++||+.||+|+..+.. ...+..+... .....+.|++|||+++.|+++++
T Consensus 142 ~~~~~~l~~~~~~~~~~~~vGD~~Ql~~v~~g~~-------~~~l~~~~~~------~~~~~~~L~~~~R~~~~I~~~a~ 208 (459)
T 3upu_A 142 RKLFKILLSTIPPWCTIIGIGDNKQIRPVDPGEN-------TAYISPFFTH------KDFYQCELTEVKRSNAPIIDVAT 208 (459)
T ss_dssp HHHHHHHHHHSCTTCEEEEEECTTSCCCCCTTSC-------SCCCCGGGTC------TTEEEEECCCCCCCCCHHHHHHH
T ss_pred HHHHHHHHHhccCCCEEEEECCHHHcCCccCCcc-------hHhHHHHHhc------CCCcEEeceeeeeCCcHHHHHHH
Confidence 5555555555556779999999999999865431 1111122211 12347889999999999999999
Q ss_pred cccc
Q 002841 627 KLFY 630 (874)
Q Consensus 627 ~~fY 630 (874)
.+..
T Consensus 209 ~lr~ 212 (459)
T 3upu_A 209 DVRN 212 (459)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 8753
No 9
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=99.94 E-value=3.1e-27 Score=285.82 Aligned_cols=283 Identities=17% Similarity=0.182 Sum_probs=168.7
Q ss_pred CCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhc--CCCeEEEecCCHHHHHHHHHHHhcccccc-c
Q 002841 390 NLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATR--EDARLLVCAPSNSAADHLLEKILGEKAVE-V 466 (874)
Q Consensus 390 ~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~--~~~rILv~ApSNsAaD~l~~rL~~~~~~~-~ 466 (874)
.||++|++||... .+|++|.|+||||||+|++++|++++... ++.+||++||||+||+++.+|+.+..+.. .
T Consensus 2 ~L~~~Q~~av~~~-----~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~~ 76 (673)
T 1uaa_A 2 RLNPGQQQAVEFV-----TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKEA 76 (673)
T ss_dssp CCCHHHHHHHHCC-----SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCTTTT
T ss_pred CCCHHHHHHHhCC-----CCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCcccc
Confidence 5899999999863 25799999999999999999999999752 56899999999999999999997632111 0
Q ss_pred ccccEEEecCC--------------CCCCcCCchh----hh-hh-------------------ccccchhccCCch----
Q 002841 467 RENEIFRLNAP--------------SRPYEDVNAD----HI-RF-------------------CFFDEQIFKCPPL---- 504 (874)
Q Consensus 467 ~~~~i~Rl~~~--------------~r~~~~v~~~----~~-~~-------------------~~~~~~~~~~~~~---- 504 (874)
....+..+.+. .....-+.+. +. +. ..+.+........
T Consensus 77 ~~~~v~Tfhs~~~~il~~~~~~~g~~~~~~i~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~~~~~~~~~~ 156 (673)
T 1uaa_A 77 RGLMISTFHTLGLDIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTPSQAAASA 156 (673)
T ss_dssp TTSEEEEHHHHHHHHHHHHHHHTTCCCCCCEECHHHHHHHHHHHTSTTSCSCHHHHHHHHHHHHHHHTTTCCTTHHHHTC
T ss_pred cCCEEEeHHHHHHHHHHHHHHHhCCCCCCEEeCHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHcCCCHHHHHHHh
Confidence 11111111000 0000000000 00 00 0000000000000
Q ss_pred ----------------hhcccceEEEEe-ch-hhhhhhhc--c---cCCCCccEEEEEcCCCCChhhhHHHhhccccCCc
Q 002841 505 ----------------AALVCYRIIIST-YM-SASLIYAE--G---VDRGHFSHIFLDEAGQASEPESMVPISSYCKKDT 561 (874)
Q Consensus 505 ----------------~~L~~~~VI~~T-~~-sa~~l~~~--~---~~~~~fd~ViIDEAsQ~~epe~li~L~~l~~~~~ 561 (874)
+.+.....+--. +. .+..+... . ....+|+||+|||+ |++.+..+..|..++..+.
T Consensus 157 ~~~~~~~~~~i~~~Y~~~l~~~~~lDfdDll~~~~~lL~~~~~~~~~~~~~~~~ilVDEf-QDt~~~Q~~ll~~L~~~~~ 235 (673)
T 1uaa_A 157 IGERDRIFAHCYGLYDAHLKACNVLDFDDLILLPTLLLQANEEVRKRWQNKIRYLLVDEY-QDTNTSQYELVKLLVGSRA 235 (673)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHTCEEHHHHHHHHHHHHHHCHHHHHHHHTTCSEEEESCG-GGCBHHHHHHHHHHHTTTC
T ss_pred hhhHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhChHHHHHHHhhCcEEEEecc-ccCCHHHHHHHHHHhcCCC
Confidence 000000000000 00 00000000 0 01257999999999 8888888888877776667
Q ss_pred EEEEecCCCcccceeecchhhhcCCCccHHHHHHhcCCCCCCCccceeecccccCCchhhhccccccccccccccccccc
Q 002841 562 VVVLAGDPMQLGPVIYSREAETYGMGKSYLERLFECEPYCHGNENYVTKLVRNYRSHPQILHLPSKLFYEEELIACKDES 641 (874)
Q Consensus 562 ~vVLvGDp~QL~PvI~s~~a~~~gl~~SlfeRL~~~~~~~~~~~~~~~~L~~nYRshp~I~~~~n~~fY~~~L~~~~~~~ 641 (874)
++++|||++| .||++. |.+...|.++....+ ....+.|.+||||++.|++++|.+|..+.......
T Consensus 236 ~l~~vGD~~Q---sIy~fr----ga~~~~~~~~~~~~~-----~~~~~~L~~nyRs~~~I~~~an~~~~~~~~~~~~~-- 301 (673)
T 1uaa_A 236 RFTVVGDDDQ---SIYSWR----GARPQNLVLLSQDFP-----ALKVIKLEQNYRSSGRILKAANILIANNPHVFEKR-- 301 (673)
T ss_dssp CEEEECCGGG---CCCGGG----TBCTTHHHHHHHHST-----TCEEECCCCBSSSCHHHHHHHHHHHHTSCCSSCCC--
T ss_pred eEEEEeCchh---hhhhcc----CCCHHHHHHHHHhCC-----CCeEEECCCCCCCChHHHHHHHHHHHhchhccccc--
Confidence 8999999999 999987 555667777755321 12367899999999999999999886543211000
Q ss_pred ccccccccCCCCCCCCEEEEecCCCccccCCCCCccCHHHHHHHHHHHHHHHHcCCCCCCeEEEEcccH
Q 002841 642 ISCTAYLNFLPNKEFPVLFFGIQGCDEREGSNPSWFNRIEVSKVVEIIQKLTSTGNLSEEDIGVITPYR 710 (874)
Q Consensus 642 ~~~~~~~~~~~~~~~pi~f~~v~g~~~~~~~s~S~~N~~Ea~~V~~~v~~L~~~~~~~~~dIgIItPY~ 710 (874)
.+... ..+.++.++.... ...|+..|+..|..++...+++++||+||++.+
T Consensus 302 -----l~~~~-~~g~~i~~~~~~~------------~~~e~~~va~~I~~l~~~~g~~~~diaVL~r~~ 352 (673)
T 1uaa_A 302 -----LFSEL-GYGAELKVLSANN------------EEHEAERVTGELIAHHFVNKTQYKDYAILYRGN 352 (673)
T ss_dssp -----CCBSS-CCCCCBEEEECSS------------HHHHHHHHHHHHHHHHHHHCCCTTTEEEEESSS
T ss_pred -----ccccC-CCCCCceEEecCC------------HHHHHHHHHHHHHHHHhccCCCccCEEEEEech
Confidence 01111 1122344443211 247899999999999843248899999999653
No 10
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=99.92 E-value=9.8e-25 Score=260.03 Aligned_cols=205 Identities=21% Similarity=0.203 Sum_probs=128.9
Q ss_pred CHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHh--cCCCeEEEecCCHHHHHHHHHHHhcccccccccc
Q 002841 392 NEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYAT--REDARLLVCAPSNSAADHLLEKILGEKAVEVREN 469 (874)
Q Consensus 392 N~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~--~~~~rILv~ApSNsAaD~l~~rL~~~~~~~~~~~ 469 (874)
++.|+.|+..++.. ..++|+||||||||+|++.++..+... ..+.+|+++|||+.||+.+.+.+..... .+.
T Consensus 151 ~~~Q~~Ai~~~l~~---~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~-~l~-- 224 (608)
T 1w36_D 151 INWQKVAAAVALTR---RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALR-QLP-- 224 (608)
T ss_dssp CCHHHHHHHHHHTB---SEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHH-HSS--
T ss_pred CHHHHHHHHHHhcC---CCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHh-cCC--
Confidence 78999999999975 568999999999999999988877653 3456999999999999999998864210 000
Q ss_pred cEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhhhcccCCCCccEEEEEcCCCCChhhh
Q 002841 470 EIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYAEGVDRGHFSHIFLDEAGQASEPES 549 (874)
Q Consensus 470 ~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~~~~~~~~~fd~ViIDEAsQ~~epe~ 549 (874)
+....+ ..++...... ++++..+.... .+........++++||||||+|...+.+
T Consensus 225 ----l~~~~~--~~~~~~~~Ti------------------h~ll~~~~~~~-~~~~~~~~~l~~d~lIIDEAsml~~~~~ 279 (608)
T 1w36_D 225 ----LTDEQK--KRIPEDASTL------------------HRLLGAQPGSQ-RLRHHAGNPLHLDVLVVDEASMIDLPMM 279 (608)
T ss_dssp ----CCSCCC--CSCSCCCBTT------------------TSCC------------CTTSCCSCSEEEECSGGGCBHHHH
T ss_pred ----CCHHHH--hccchhhhhh------------------HhhhccCCCch-HHHhccCCCCCCCEEEEechhhCCHHHH
Confidence 000000 0010000000 00000000000 0000111223799999999998887654
Q ss_pred HHHhhccccCCcEEEEecCCCcccceeecch------hhhcCCCccHHHHHHhcCCCCC------CCc---cceeecccc
Q 002841 550 MVPISSYCKKDTVVVLAGDPMQLGPVIYSRE------AETYGMGKSYLERLFECEPYCH------GNE---NYVTKLVRN 614 (874)
Q Consensus 550 li~L~~l~~~~~~vVLvGDp~QL~PvI~s~~------a~~~gl~~SlfeRL~~~~~~~~------~~~---~~~~~L~~n 614 (874)
...+. ....+.++||+||+.||||+..+.. ....|++.++++++.....+.- ..+ ..++.|+++
T Consensus 280 ~~Ll~-~l~~~~~liLvGD~~QL~~V~~G~vl~dl~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 358 (608)
T 1w36_D 280 SRLID-ALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKS 358 (608)
T ss_dssp HHHHH-TCCTTCEEEEEECTTSGGGTSTTBCHHHHGGGGTTCCCHHHHHHHHHHSSSCCCCCSTTTTHHHHTTEEECCCC
T ss_pred HHHHH-hCCCCCEEEEEcchhhcCCCCCCcHHHHHHHHHhccccHHHHHHHHHhcCcccccccccccccccccEEeccee
Confidence 44444 4456789999999999999875532 1235788899998865422110 001 126899999
Q ss_pred cCCchh--hhcccccc
Q 002841 615 YRSHPQ--ILHLPSKL 628 (874)
Q Consensus 615 YRshp~--I~~~~n~~ 628 (874)
||++++ |..+++.+
T Consensus 359 ~R~~~~s~I~~la~~i 374 (608)
T 1w36_D 359 YRFGSDSGIGQLAAAI 374 (608)
T ss_dssp CCSSCCTTHHHHHHHH
T ss_pred eeeCCcchHHHHHHHH
Confidence 999876 88877643
No 11
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=99.86 E-value=4.1e-22 Score=255.05 Aligned_cols=171 Identities=17% Similarity=0.154 Sum_probs=106.1
Q ss_pred CccEEEEEcCCCCChhhhHHHhhccccC---CcEEEEecCCCcccceeecchhhhcCCCccHHHHHHhcCCCCCCCccce
Q 002841 532 HFSHIFLDEAGQASEPESMVPISSYCKK---DTVVVLAGDPMQLGPVIYSREAETYGMGKSYLERLFECEPYCHGNENYV 608 (874)
Q Consensus 532 ~fd~ViIDEAsQ~~epe~li~L~~l~~~---~~~vVLvGDp~QL~PvI~s~~a~~~gl~~SlfeRL~~~~~~~~~~~~~~ 608 (874)
+|+||+|||+ |++.|..+..|..++.. ..++++|||++| .||++. |.+..+|.+......-..+.....
T Consensus 400 ~~~~IlVDEf-QDt~~~Q~~il~~L~~~~~~~~~l~~vGD~~Q---sIY~FR----gAd~~~f~~~~~~~~~~~~~~~~~ 471 (1232)
T 3u4q_A 400 QFHEVLVDEY-QDTNLVQESILQLVTSGPEETGNLFMVGDVKQ---SIYRFR----LAEPLLFLSKYKRFTESGEGTGRK 471 (1232)
T ss_dssp HCSEEEESSG-GGCCHHHHHHHHHHSCSCTTSSCEEEEECGGG---CCCTTT----TCCTHHHHHHHHHSBSSCTTSCEE
T ss_pred CCCEEEEEcc-ccCCHHHHHHHHHHhcCCCCCCcEEEEeCchH---HhHhcc----CCCHHHHHHHHHHhhhhcCCCCcE
Confidence 4899999999 99999988888877764 468999999999 999987 667788877755322111122356
Q ss_pred eecccccCCchhhhccccccccccccccccc---ccccccccccCCC-CCCCCEEEEecCCCcccc-CCCCC--ccCHHH
Q 002841 609 TKLVRNYRSHPQILHLPSKLFYEEELIACKD---ESISCTAYLNFLP-NKEFPVLFFGIQGCDERE-GSNPS--WFNRIE 681 (874)
Q Consensus 609 ~~L~~nYRshp~I~~~~n~~fY~~~L~~~~~---~~~~~~~~~~~~~-~~~~pi~f~~v~g~~~~~-~~s~S--~~N~~E 681 (874)
+.|.+||||++.|+++.|.+|....-..... .....+......+ ....++.++-..+..... ..... -....|
T Consensus 472 i~L~~NyRS~~~Il~~~n~lf~~~~~~~~~~i~y~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~E 551 (1232)
T 3u4q_A 472 IDLNKNFRSRADILDSTNFLFKQLMGGKIGEVDYDEQAELKLGAAYPDNDETETELLLIDNAEDTDASEEAEELETVQFE 551 (1232)
T ss_dssp EEECEESSSCHHHHHHHHHHHHTTSCHHHHSSCCCTTTSCEECCCCCCCSSCSEEEEEEC-------------CHHHHHH
T ss_pred eECCCCCCCChHHHHHHHHHHhhccccccccCCCchhhhcccCccCccCCCCCeEEEEecCCccccccccccccccHHHH
Confidence 7899999999999999999885431100000 0000000000111 122344433332111000 00000 113468
Q ss_pred HHHHHHHHHHHHHcC------------CCCCCeEEEEcccH
Q 002841 682 VSKVVEIIQKLTSTG------------NLSEEDIGVITPYR 710 (874)
Q Consensus 682 a~~V~~~v~~L~~~~------------~~~~~dIgIItPY~ 710 (874)
|..|+..|+.|+..+ ++.++||+||++.+
T Consensus 552 a~~iA~~I~~l~~~~~~v~d~~~~~~r~~~~~DIAIL~R~~ 592 (1232)
T 3u4q_A 552 AKAIAKEIRKLISSPFKVYDGKKKTHRNIQYRDIVILLRSM 592 (1232)
T ss_dssp HHHHHHHHHHHHTSCCCBC---CCCCBCCCSTTEEEEESSS
T ss_pred HHHHHHHHHHHHhcCCceecccccccCCCCcCCEEEEEECc
Confidence 999999999998764 46789999999654
No 12
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=99.86 E-value=3.9e-21 Score=216.82 Aligned_cols=274 Identities=15% Similarity=0.101 Sum_probs=166.8
Q ss_pred CCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHhcccccccccccEEEecCCCCCCcCCchhh
Q 002841 409 PPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILGEKAVEVRENEIFRLNAPSRPYEDVNADH 488 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~~~~~~~~~~~~i~Rl~~~~r~~~~v~~~~ 488 (874)
...+|.|+||||||+.+.+.+. ..++|++|||+.|++++.+++.+. +.. ....
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~-------~~~~lVlTpT~~aa~~l~~kl~~~-~~~---------~~~~---------- 214 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVN-------FEEDLILVPGRQAAEMIRRRANAS-GII---------VATK---------- 214 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCC-------TTTCEEEESCHHHHHHHHHHHTTT-SCC---------CCCT----------
T ss_pred cEEEEEcCCCCCHHHHHHHHhc-------cCCeEEEeCCHHHHHHHHHHhhhc-Ccc---------cccc----------
Confidence 3479999999999999877552 257899999999999999999641 000 0000
Q ss_pred hhhccccchhccCCchhhcccceEEEEechhhhhhhhcccCCCCccEEEEEcCCCCChhhhHHHhhccccCCcEEEEecC
Q 002841 489 IRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYAEGVDRGHFSHIFLDEAGQASEPESMVPISSYCKKDTVVVLAGD 568 (874)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~~~~~~~~~fd~ViIDEAsQ~~epe~li~L~~l~~~~~~vVLvGD 568 (874)
. -+.|..++-. .........+++||||||+++....+...+. +... .++|++||
T Consensus 215 ~-----------------------~V~T~dsfL~-~~~~~~~~~~d~liiDE~sm~~~~~l~~l~~-~~~~-~~vilvGD 268 (446)
T 3vkw_A 215 D-----------------------NVRTVDSFLM-NYGKGARCQFKRLFIDEGLMLHTGCVNFLVE-MSLC-DIAYVYGD 268 (446)
T ss_dssp T-----------------------TEEEHHHHHH-TTTSSCCCCCSEEEEETGGGSCHHHHHHHHH-HTTC-SEEEEEEC
T ss_pred c-----------------------eEEEeHHhhc-CCCCCCCCcCCEEEEeCcccCCHHHHHHHHH-hCCC-CEEEEecC
Confidence 0 0122221111 0011112358999999998887554433333 3333 78999999
Q ss_pred CCcccceeecchhhhcCCCccHHHHHHhcCCCCCCCccceeecccccCCchhhhcccccccccccccccccccccccccc
Q 002841 569 PMQLGPVIYSREAETYGMGKSYLERLFECEPYCHGNENYVTKLVRNYRSHPQILHLPSKLFYEEELIACKDESISCTAYL 648 (874)
Q Consensus 569 p~QL~PvI~s~~a~~~gl~~SlfeRL~~~~~~~~~~~~~~~~L~~nYRshp~I~~~~n~~fY~~~L~~~~~~~~~~~~~~ 648 (874)
++||||+..... ..+..+ +.++. ...+..+..+|||+..++.+.+.+ |++.+.....
T Consensus 269 ~~Qlp~v~~~~~---~~~~~~-~~~l~---------~~~~~~~~~SyR~p~dv~~lLs~l-Y~~~V~t~s~--------- 325 (446)
T 3vkw_A 269 TQQIPYINRVTG---FPYPAH-FAKLE---------VDEVETRRTTLRCPADVTHFLNQR-YEGHVMCTSS--------- 325 (446)
T ss_dssp TTSCCCCCCSTT---CCCCHH-HHSCC---------CSEEEEECEESSCCHHHHHHHHTT-SSSCCEECCC---------
T ss_pred cccccCcccCCC---ccchhh-hhhcc---------cCcEEEeeeEeCCCHHHHHHHHhh-cCCceEECCC---------
Confidence 999999865432 111111 22221 112456889999999999999986 7665432211
Q ss_pred cCCCCCCCCEEEEecCCCccccCCCCCccCHHHHHHHHHHHHHHHHcCCCCCCeEEEEcccHHHHHHHHHHHHhcCCCCe
Q 002841 649 NFLPNKEFPVLFFGIQGCDEREGSNPSWFNRIEVSKVVEIIQKLTSTGNLSEEDIGVITPYRQQVLKLNKALESLYMPDI 728 (874)
Q Consensus 649 ~~~~~~~~pi~f~~v~g~~~~~~~s~S~~N~~Ea~~V~~~v~~L~~~~~~~~~dIgIItPY~~Qv~~Ir~~L~~~~~~~v 728 (874)
....+.+..+.+...-+.. ..++ .--|||+.......+.+ .+..
T Consensus 326 -----~~~sv~~~~I~~~~~~~~~------------------------~~~~-~g~iLtftq~~k~~L~~----~G~~-- 369 (446)
T 3vkw_A 326 -----EKKSVSQEMVSGAASINPV------------------------SKPL-KGKILTFTQSDKEALLS----RGYA-- 369 (446)
T ss_dssp -----CCCCEEEEECCCGGGCCTT------------------------TSCC-CSEEEESSHHHHHHHHT----TTCC--
T ss_pred -----cCceEEEeccccccccccc------------------------cCCC-CCeEEEcCHHHHHHHHH----hCCC--
Confidence 1123455555443211100 0112 22567877766666553 3332
Q ss_pred EECccccCCCceeeEEEEEeccCCCcCCccccccccccCCCCCceEeccccccccEEEEEccccccCChHHHHHHHHHHh
Q 002841 729 KVGSVEQFQGQERQVIIVSTVRSTIKHNDFDRKHCLGFLSNPRRFNVAVTRAISLLIIIGNPHIVSKDPYWHQLLWYCSD 808 (874)
Q Consensus 729 ~V~TVd~fQG~E~dvVIiS~VRs~~~~~~~d~~~~lGFl~d~rrlNVAiTRAK~~LiIvGn~~~L~~~~~w~~ll~~~~~ 808 (874)
.+.|||++||.|+|.|.+....+.+ ...|..+..++|||+||||..|.++.= . +..|-+.|..+..
T Consensus 370 ~~~Tv~e~QG~tf~~Vtlvr~~~~~---------~~l~~~~~~~~~VALTRh~~~L~~~tv----~-~D~~~~~i~~~~~ 435 (446)
T 3vkw_A 370 DVHTVHEVQGETYADVSLVRLTPTP---------VSIIARDSPHVLVSLSRHTKSLKYYTV----V-MDPLVSIIRDLER 435 (446)
T ss_dssp SCEETGGGTTCCEEEEEEEECCCSC---------CTTCSTTCHHHHHHHSSEEEEEEEEES----S-CCHHHHHHHHHHH
T ss_pred CccCHHHcCCcccCeEEEEECCCCC---------cccccCCccceEEEeecCCCEEEEEEe----c-CChHHHHHHHhhh
Confidence 2899999999999999884333221 112334678999999999999998852 2 5566666666554
No 13
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=99.55 E-value=3.3e-14 Score=181.52 Aligned_cols=181 Identities=18% Similarity=0.244 Sum_probs=116.7
Q ss_pred CccEEEEEcCCCCChhhhHHHhhcccc--CCcEEEEecCCCcccceeecchhhhcCCCccHHHHHHhcCCCCCCCcccee
Q 002841 532 HFSHIFLDEAGQASEPESMVPISSYCK--KDTVVVLAGDPMQLGPVIYSREAETYGMGKSYLERLFECEPYCHGNENYVT 609 (874)
Q Consensus 532 ~fd~ViIDEAsQ~~epe~li~L~~l~~--~~~~vVLvGDp~QL~PvI~s~~a~~~gl~~SlfeRL~~~~~~~~~~~~~~~ 609 (874)
+|+||+|||+ |++.|..+..|..++. .+..+++|||++| .||++.. .+...+.+..... ...+
T Consensus 377 r~~~ilVDEf-QDtn~~Q~~il~~L~~~~~~~~l~~VGD~kQ---SIY~FRG----Ad~~~~~~~~~~~-------~~~~ 441 (1180)
T 1w36_B 377 RFPVAMIDEF-QDTDPQQYRIFRRIWHHQPETALLLIGDPKQ---AIYAFRG----ADIFTYMKARSEV-------HAHY 441 (1180)
T ss_dssp HCSEEEECSG-GGCCHHHHHHHHHHHTTCTTCEEEEEECGGG---CCCGGGT----CCHHHHHHHHHHC-------CCEE
T ss_pred CCCEEEEECC-ccCCHHHHHHHHHHHcCCCCCeEEEEECCcc---ccccCcC----CCHHHHHHHHHhc-------CCce
Confidence 4999999999 9999988888877654 3468999999999 9999873 3443344443321 1257
Q ss_pred ecccccCCchhhhccccccccccccccc-ccccccc---c-c----cccCCCCCCCCEEEEecCCCccccCCCCCccCHH
Q 002841 610 KLVRNYRSHPQILHLPSKLFYEEELIAC-KDESISC---T-A----YLNFLPNKEFPVLFFGIQGCDEREGSNPSWFNRI 680 (874)
Q Consensus 610 ~L~~nYRshp~I~~~~n~~fY~~~L~~~-~~~~~~~---~-~----~~~~~~~~~~pi~f~~v~g~~~~~~~s~S~~N~~ 680 (874)
.|.+||||++.|+++.|.+|-...-... ....... . . .+........++.++...+.. .+..-....
T Consensus 442 ~L~~NyRS~~~Il~~~N~lf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~~~~ 517 (1180)
T 1w36_B 442 TLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGES----CGVGDYQST 517 (1180)
T ss_dssp ECCEETTSCHHHHHHHHHHHHSSSSTTSSTTSCCCCCEECGGGTTEEEEETTEEECSEEEEECCSSC----CCTTHHHHH
T ss_pred eCCCCcCCcHHHHHHHHHHHhccccccccCCCCcccccccccccccccccCCCCCCCeeEeecCCCc----cCcchHHHH
Confidence 7999999999999999998854321000 0000000 0 0 000000001234443222110 000111246
Q ss_pred HHHHHHHHHHHHHHc--------------CCCCCCeEEEEcccHHHHHHHHHHHHhcCCCCeEEC
Q 002841 681 EVSKVVEIIQKLTST--------------GNLSEEDIGVITPYRQQVLKLNKALESLYMPDIKVG 731 (874)
Q Consensus 681 Ea~~V~~~v~~L~~~--------------~~~~~~dIgIItPY~~Qv~~Ir~~L~~~~~~~v~V~ 731 (874)
||..|+..|..++.. .++.++||+||++.+.|...|.+.|.+.+++-+.++
T Consensus 518 ea~~iA~~I~~l~~~~~~~~~~~~~~~~~~~~~~~DIAIL~R~~~~~~~i~~~L~~~gIP~~~~~ 582 (1180)
T 1w36_B 518 MAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLS 582 (1180)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEETTEEEECCGGGEEEEESSHHHHHHHHHHHHTTTCCEEETT
T ss_pred HHHHHHHHHHHHHHhcccccceecCCcccCCCCcccEEEEeecchHHHHHHHHHHHCCCCEEEcc
Confidence 899999999999863 247889999999999999999999999888754443
No 14
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=99.51 E-value=1.8e-14 Score=144.23 Aligned_cols=140 Identities=18% Similarity=0.197 Sum_probs=100.1
Q ss_pred ccccCCchhhhcccccccccccccccccccccccccccCCCCCCCCEEEEecCCCccccCCCCCccCHHHHHHHHHHHHH
Q 002841 612 VRNYRSHPQILHLPSKLFYEEELIACKDESISCTAYLNFLPNKEFPVLFFGIQGCDEREGSNPSWFNRIEVSKVVEIIQK 691 (874)
Q Consensus 612 ~~nYRshp~I~~~~n~~fY~~~L~~~~~~~~~~~~~~~~~~~~~~pi~f~~v~g~~~~~~~s~S~~N~~Ea~~V~~~v~~ 691 (874)
++||||+++|++++|.++.++.-. .........|.+ +.... ..+|+..|++.+..
T Consensus 2 ~~NYRSt~~Il~~An~li~~~~~~------------~~~~~~G~~p~~-~~~~~------------~~~e~~~i~~~I~~ 56 (174)
T 3dmn_A 2 NASYRSTQQITDFTKEILVNGEAV------------TAFDRQGDLPNV-VVTPN------------FEAGVDQVVDQLAM 56 (174)
T ss_dssp -CCCCCCHHHHHHHHTTSCC--------------------CCCCCCEE-EEESS------------HHHHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHhcCCCcc------------cCCCCCCCCCEE-EEeCC------------HHHHHHHHHHHHHH
Confidence 479999999999999887654200 000112222333 32211 13688899998888
Q ss_pred HHHcCCCCCCeEEEEcccHHHHHHHHHHHHhcCC-------------CCeEECccccCCCceeeEEEEEeccCCCcCCcc
Q 002841 692 LTSTGNLSEEDIGVITPYRQQVLKLNKALESLYM-------------PDIKVGSVEQFQGQERQVIIVSTVRSTIKHNDF 758 (874)
Q Consensus 692 L~~~~~~~~~dIgIItPY~~Qv~~Ir~~L~~~~~-------------~~v~V~TVd~fQG~E~dvVIiS~VRs~~~~~~~ 758 (874)
...+ .++||||++.+.|...+.+.|...++ .++.|.|+|.+||.|||.||+..+....
T Consensus 57 -~~~g---~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~~~~~~v~v~t~~~~KGlEf~~V~~~~~~~~~----- 127 (174)
T 3dmn_A 57 -NDSE---RDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQRLAPGVIVVPSFLAKGLEFDAVIVWNANQEN----- 127 (174)
T ss_dssp -HHHT---TCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC-CCCSSEEEEEGGGCTTCCEEEEEEETCBTTT-----
T ss_pred -hccC---CCcEEEEecCHHHHHHHHHHHHHcCCcceeecccccccCCCeEEEEccccCCcCCCEEEEecCCccc-----
Confidence 4443 68999999999999999999987643 3588999999999999999997654321
Q ss_pred ccccccccCCCCCceEeccccccccEEEEEcc
Q 002841 759 DRKHCLGFLSNPRRFNVAVTRAISLLIIIGNP 790 (874)
Q Consensus 759 d~~~~lGFl~d~rrlNVAiTRAK~~LiIvGn~ 790 (874)
.....+.|+||||+||||+.|+|++..
T Consensus 128 -----~~~~~~~~llYva~TRA~~~l~~~~~~ 154 (174)
T 3dmn_A 128 -----YQREDERQLLYTICSRAMHELTLVAVG 154 (174)
T ss_dssp -----SCSGGGHHHHHHHHTTEEEEEEEEEES
T ss_pred -----CCChhhhceeEEEecCcccEEEEEeCC
Confidence 111345788999999999999999863
No 15
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=99.31 E-value=7.3e-12 Score=160.14 Aligned_cols=162 Identities=11% Similarity=0.099 Sum_probs=110.6
Q ss_pred cEEEEEcCCCCChhhhHHHhhccccCCcEE--EEecC--------CCcccceeecchhhhcCCCccHHHHHHhcCCCCCC
Q 002841 534 SHIFLDEAGQASEPESMVPISSYCKKDTVV--VLAGD--------PMQLGPVIYSREAETYGMGKSYLERLFECEPYCHG 603 (874)
Q Consensus 534 d~ViIDEAsQ~~epe~li~L~~l~~~~~~v--VLvGD--------p~QL~PvI~s~~a~~~gl~~SlfeRL~~~~~~~~~ 603 (874)
+||+|||+ |++.|..+..|..++....++ +++|| ++| .||++..+. ...|.++.....+.
T Consensus 203 ~~IlVDEf-QD~~~~Q~~ll~~L~~~~~~~~v~lvGD~~~~~~~~~~Q---sIY~~rga~----~~~l~~~~~~~~~~-- 272 (1166)
T 3u4q_B 203 AHIYVDGF-YQFTPQEFRVLEQLMVHAEHITFSLTADKPSYEREPHEL---ELFRMTGKT----YYRLHQKAKELNLD-- 272 (1166)
T ss_dssp CEEEECSC-SCCCHHHHHHHHHHHHHCSEEEEEEECSSCCSSSCCCTT---CTTHHHHHH----HHHHHHHHHHTTCC--
T ss_pred CEEEEeCC-CCCCHHHHHHHHHHHHhCCCEEEEEEeCcccccCCCCCC---CcchhHHHH----HHHHHHHHHHcCCC--
Confidence 79999999 888898888888777654444 46799 788 888877443 33455554321111
Q ss_pred CccceeecccccCCchhhhcccccccccccccccccccccccccccCCCCCCCCEEEEecCCCccccCCCCCccCHHHHH
Q 002841 604 NENYVTKLVRNYRSHPQILHLPSKLFYEEELIACKDESISCTAYLNFLPNKEFPVLFFGIQGCDEREGSNPSWFNRIEVS 683 (874)
Q Consensus 604 ~~~~~~~L~~nYRshp~I~~~~n~~fY~~~L~~~~~~~~~~~~~~~~~~~~~~pi~f~~v~g~~~~~~~s~S~~N~~Ea~ 683 (874)
....+.|..||||++.|+.+.++.+.... . ...+..+.++.++.... ...|++
T Consensus 273 -~~~~~~L~~nyRs~~~il~~i~~~~~~~~-----~---------~~~~~~~~~i~i~~~~~------------~~~Ea~ 325 (1166)
T 3u4q_B 273 -ITYKELSGTERHTKTPELAHLEAQYEARP-----A---------IPYAEKQEALTVMQAAN------------RRAELE 325 (1166)
T ss_dssp -EEEEEECSCSTTTTCHHHHHHHHSSSCSS-----C---------CCCCSCCSSEEEEEESS------------HHHHHH
T ss_pred -cccceecCCCCCCCCHHHHHHHHhHhhcC-----C---------CccCCCCCCeEEEEcCC------------hHHHHH
Confidence 12367899999999999887765442110 0 00112233455544321 236899
Q ss_pred HHHHHHHHHHHcCCCCCCeEEEEcccH-HHHHHHHHHHHhcCCCCeEECc
Q 002841 684 KVVEIIQKLTSTGNLSEEDIGVITPYR-QQVLKLNKALESLYMPDIKVGS 732 (874)
Q Consensus 684 ~V~~~v~~L~~~~~~~~~dIgIItPY~-~Qv~~Ir~~L~~~~~~~v~V~T 732 (874)
.|+..|..++...+++++||+||++.+ .|...|...|.+.+++-...+.
T Consensus 326 ~ia~~I~~l~~~~g~~~~diAVL~R~~~~~~~~i~~~L~~~gIP~~~~~~ 375 (1166)
T 3u4q_B 326 GIAREIHALVREKGYRYKDVAILARQPEDYKDMVKEVFADYEIPYFIDGK 375 (1166)
T ss_dssp HHHHHHHHHHHTSCCCGGGEEEEESCGGGTHHHHHHHHHHTTCCEEESSC
T ss_pred HHHHHHHHHHHhcCCChhheEEEeCChHHHHHHHHHHHHHcCCCEEECCC
Confidence 999999999884458999999999998 5899999999998887443333
No 16
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=98.77 E-value=1.7e-08 Score=103.03 Aligned_cols=133 Identities=20% Similarity=0.145 Sum_probs=83.5
Q ss_pred CCCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhc----CCCeEEEecCCHHHHHH-HHHHHhcccc
Q 002841 389 CNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATR----EDARLLVCAPSNSAADH-LLEKILGEKA 463 (874)
Q Consensus 389 ~~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~----~~~rILv~ApSNsAaD~-l~~rL~~~~~ 463 (874)
..|++.|.+|+..++.. ..++|.||+|||||.+....+.+++... .+.++|+++|+...++. +.+.+.....
T Consensus 32 ~~l~~~Q~~~i~~~~~~---~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~ 108 (216)
T 3b6e_A 32 LQLRPYQMEVAQPALEG---KNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 108 (216)
T ss_dssp CCCCHHHHHHHHHHHTT---CCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHT
T ss_pred CCchHHHHHHHHHHhcC---CCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhc
Confidence 47899999999999875 3479999999999999988888776543 36799999999999888 5554443111
Q ss_pred cccccccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhhhcc-------cCCCCccEE
Q 002841 464 VEVRENEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYAEG-------VDRGHFSHI 536 (874)
Q Consensus 464 ~~~~~~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~~~~-------~~~~~fd~V 536 (874)
. ...+..+...... ..........++|+++|........... .....+++|
T Consensus 109 ~---~~~v~~~~g~~~~-------------------~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~i 166 (216)
T 3b6e_A 109 K---WYRVIGLSGDTQL-------------------KISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLI 166 (216)
T ss_dssp T---TSCEEECCC---C-------------------CCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEE
T ss_pred c---CceEEEEeCCccc-------------------chhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEE
Confidence 0 1112222111100 0001122346789999987765433321 334578999
Q ss_pred EEEcCCCCCh
Q 002841 537 FLDEAGQASE 546 (874)
Q Consensus 537 iIDEAsQ~~e 546 (874)
|||||-....
T Consensus 167 IiDEah~~~~ 176 (216)
T 3b6e_A 167 IIDECHHTNK 176 (216)
T ss_dssp EETTC-----
T ss_pred EEECchhhcc
Confidence 9999965543
No 17
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=98.75 E-value=6.2e-08 Score=103.91 Aligned_cols=135 Identities=10% Similarity=0.066 Sum_probs=90.1
Q ss_pred CCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHhcccccccccc
Q 002841 390 NLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILGEKAVEVREN 469 (874)
Q Consensus 390 ~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~~~~~~~~~~~ 469 (874)
.|++.|.+|+..++... ..+|.+|.|||||.+.+..+...+.. ...++|+++|+++.+++..+++.+... ....
T Consensus 113 ~l~~~Q~~ai~~~l~~~---~~ll~~~tGsGKT~~~~~~~~~~~~~-~~~~~lil~Pt~~L~~q~~~~l~~~~~--~~~~ 186 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNR---RRILNLPTSAGRSLIQALLARYYLEN-YEGKILIIVPTTALTTQMADDFVDYRL--FSHA 186 (282)
T ss_dssp CCCHHHHHHHHHHHHHS---EEEECCCTTSCHHHHHHHHHHHHHHH-CSSEEEEECSSHHHHHHHHHHHHHHTS--CCGG
T ss_pred CccHHHHHHHHHHHhcC---CeEEEcCCCCCcHHHHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhcc--cccc
Confidence 68999999999998753 25899999999999998877776653 345999999999999999999976311 1111
Q ss_pred cEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhhhcccCCCCccEEEEEcCCCCChhhh
Q 002841 470 EIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYAEGVDRGHFSHIFLDEAGQASEPES 549 (874)
Q Consensus 470 ~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~~~~~~~~~fd~ViIDEAsQ~~epe~ 549 (874)
.+..+....... .......+|+++|..+...... ....+|++||||||-....+..
T Consensus 187 ~~~~~~~~~~~~----------------------~~~~~~~~I~v~T~~~l~~~~~--~~~~~~~~vIiDEaH~~~~~~~ 242 (282)
T 1rif_A 187 MIKKIGGGASKD----------------------DKYKNDAPVVVGTWQTVVKQPK--EWFSQFGMMMNDECHLATGKSI 242 (282)
T ss_dssp GEEECSTTCSST----------------------TCCCTTCSEEEECHHHHTTSCG--GGGGGEEEEEEETGGGCCHHHH
T ss_pred eEEEEeCCCcch----------------------hhhccCCcEEEEchHHHHhhHH--HHHhhCCEEEEECCccCCcccH
Confidence 222222211100 0223567899999865543211 1224789999999966665533
Q ss_pred HHHhh
Q 002841 550 MVPIS 554 (874)
Q Consensus 550 li~L~ 554 (874)
...+.
T Consensus 243 ~~il~ 247 (282)
T 1rif_A 243 SSIIS 247 (282)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 33333
No 18
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=98.72 E-value=1.4e-07 Score=98.70 Aligned_cols=140 Identities=21% Similarity=0.194 Sum_probs=92.0
Q ss_pred CCCCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHhcccccccc
Q 002841 388 SCNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILGEKAVEVR 467 (874)
Q Consensus 388 ~~~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~~~~~~~~~ 467 (874)
...|++.|.+|+..++... -.+|.||+|+|||.++...+..+ +.++|+++|+...++++.+++.+. +
T Consensus 91 ~~~l~~~Q~~ai~~~~~~~---~~ll~~~tG~GKT~~a~~~~~~~-----~~~~liv~P~~~L~~q~~~~~~~~-~---- 157 (237)
T 2fz4_A 91 EISLRDYQEKALERWLVDK---RGCIVLPTGSGKTHVAMAAINEL-----STPTLIVVPTLALAEQWKERLGIF-G---- 157 (237)
T ss_dssp CCCCCHHHHHHHHHHTTTS---EEEEEESSSTTHHHHHHHHHHHS-----CSCEEEEESSHHHHHHHHHHHGGG-C----
T ss_pred CCCcCHHHHHHHHHHHhCC---CEEEEeCCCCCHHHHHHHHHHHc-----CCCEEEEeCCHHHHHHHHHHHHhC-C----
Confidence 3578999999999988753 27999999999999877665542 578999999999999999988751 1
Q ss_pred cccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhhhcccCCCCccEEEEEcCCCCChh
Q 002841 468 ENEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYAEGVDRGHFSHIFLDEAGQASEP 547 (874)
Q Consensus 468 ~~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~~~~~~~~~fd~ViIDEAsQ~~ep 547 (874)
...+..+..... ...+|+++|.......... + ...+++||||||.....+
T Consensus 158 ~~~v~~~~g~~~----------------------------~~~~i~v~T~~~l~~~~~~-~-~~~~~llIiDEaH~l~~~ 207 (237)
T 2fz4_A 158 EEYVGEFSGRIK----------------------------ELKPLTVSTYDSAYVNAEK-L-GNRFMLLIFDEVHHLPAE 207 (237)
T ss_dssp GGGEEEESSSCB----------------------------CCCSEEEEEHHHHHHTHHH-H-TTTCSEEEEECSSCCCTT
T ss_pred CCeEEEEeCCCC----------------------------CcCCEEEEeHHHHHhhHHH-h-cccCCEEEEECCccCCCh
Confidence 111222222110 1357888887655432221 1 246999999999776655
Q ss_pred hhHHHhhccccCCcEEEEecCCCc
Q 002841 548 ESMVPISSYCKKDTVVVLAGDPMQ 571 (874)
Q Consensus 548 e~li~L~~l~~~~~~vVLvGDp~Q 571 (874)
.. ..+........++.|.|=|.+
T Consensus 208 ~~-~~i~~~~~~~~~l~LSATp~r 230 (237)
T 2fz4_A 208 SY-VQIAQMSIAPFRLGLTATFER 230 (237)
T ss_dssp TH-HHHHHTCCCSEEEEEEESCC-
T ss_pred HH-HHHHHhccCCEEEEEecCCCC
Confidence 43 333333333345666665544
No 19
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=98.72 E-value=7.9e-08 Score=97.54 Aligned_cols=128 Identities=19% Similarity=0.137 Sum_probs=85.3
Q ss_pred CCCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHh----cCCCeEEEecCCHHHHHHHHHHHhccccc
Q 002841 389 CNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYAT----REDARLLVCAPSNSAADHLLEKILGEKAV 464 (874)
Q Consensus 389 ~~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~----~~~~rILv~ApSNsAaD~l~~rL~~~~~~ 464 (874)
..+++.|++|+..+++.+ .++|.+|+|||||.+....+.+.+.. ..+.++|+++|+...+..+.+++.+..
T Consensus 22 ~~~~~~Q~~~i~~~~~~~---~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~-- 96 (207)
T 2gxq_A 22 TTPTPIQAAALPLALEGK---DLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVA-- 96 (207)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHC--
T ss_pred CCCCHHHHHHHHHHcCCC---CEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHh--
Confidence 368999999999999863 37999999999999876666655432 245689999999999999999987631
Q ss_pred ccccccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhhh-cccCCCCccEEEEEcCC
Q 002841 465 EVRENEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYA-EGVDRGHFSHIFLDEAG 542 (874)
Q Consensus 465 ~~~~~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~~-~~~~~~~fd~ViIDEAs 542 (874)
....+..+..... ..... ......++|+++|......... ..+....+++||||||-
T Consensus 97 --~~~~~~~~~~~~~----~~~~~---------------~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah 154 (207)
T 2gxq_A 97 --PHLKVVAVYGGTG----YGKQK---------------EALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEAD 154 (207)
T ss_dssp --TTSCEEEECSSSC----SHHHH---------------HHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHH
T ss_pred --hcceEEEEECCCC----hHHHH---------------HHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChh
Confidence 1112222211110 00000 0112457899999876544332 23445679999999994
No 20
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=98.71 E-value=7.3e-08 Score=99.29 Aligned_cols=129 Identities=19% Similarity=0.107 Sum_probs=82.6
Q ss_pred CCCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHh-cCCCeEEEecCCHHHHHHHHHHHhcccccccc
Q 002841 389 CNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYAT-REDARLLVCAPSNSAADHLLEKILGEKAVEVR 467 (874)
Q Consensus 389 ~~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~-~~~~rILv~ApSNsAaD~l~~rL~~~~~~~~~ 467 (874)
..+++.|++|+..++... .++|.+|.|||||.+..-.+.+.+.. ..+.++|+++|+...+..+.+++...... .
T Consensus 35 ~~~~~~Q~~~i~~~~~~~---~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~--~ 109 (224)
T 1qde_A 35 EEPSAIQQRAIMPIIEGH---DVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFH--M 109 (224)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTT--S
T ss_pred CCCcHHHHHHHHHHhcCC---CEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcc--c
Confidence 368999999999999763 37999999999998855555444432 34569999999999999999888752110 0
Q ss_pred cccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhhh-cccCCCCccEEEEEcCC
Q 002841 468 ENEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYA-EGVDRGHFSHIFLDEAG 542 (874)
Q Consensus 468 ~~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~~-~~~~~~~fd~ViIDEAs 542 (874)
...+..+...... ......+..++|+++|......... .......+++||||||-
T Consensus 110 ~~~~~~~~g~~~~--------------------~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah 165 (224)
T 1qde_A 110 DIKVHACIGGTSF--------------------VEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEAD 165 (224)
T ss_dssp CCCEEEECC------------------------------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHH
T ss_pred CceEEEEeCCcch--------------------HHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChh
Confidence 1112211111000 0011223458899999876543322 23344579999999994
No 21
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=98.71 E-value=3.9e-08 Score=102.32 Aligned_cols=130 Identities=17% Similarity=0.136 Sum_probs=85.6
Q ss_pred CCCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHh-----cCCCeEEEecCCHHHHHHHHHHHhcccc
Q 002841 389 CNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYAT-----REDARLLVCAPSNSAADHLLEKILGEKA 463 (874)
Q Consensus 389 ~~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~-----~~~~rILv~ApSNsAaD~l~~rL~~~~~ 463 (874)
..+++.|.+|+..++..+ .++|.+|.|||||.+....+.+.+.. .++.++|+++||...+..+.+++.....
T Consensus 46 ~~~~~~Q~~~i~~~~~~~---~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 122 (236)
T 2pl3_A 46 RLVTEIQKQTIGLALQGK---DVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGK 122 (236)
T ss_dssp CBCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhC
Confidence 468999999999999763 37999999999999876666655432 2467899999999999999998876311
Q ss_pred cccccccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhhhc--ccCCCCccEEEEEcC
Q 002841 464 VEVRENEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYAE--GVDRGHFSHIFLDEA 541 (874)
Q Consensus 464 ~~~~~~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~~~--~~~~~~fd~ViIDEA 541 (874)
. ....+..+..... ... ....+..++|+++|.......... .+....+++||||||
T Consensus 123 ~--~~~~~~~~~g~~~----~~~----------------~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEa 180 (236)
T 2pl3_A 123 N--HDFSAGLIIGGKD----LKH----------------EAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEA 180 (236)
T ss_dssp T--SSCCEEEECCC------CHH----------------HHHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTH
T ss_pred C--CCeeEEEEECCCC----HHH----------------HHHhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeCh
Confidence 0 0011111111000 000 012235688999998766443322 234467899999999
Q ss_pred CC
Q 002841 542 GQ 543 (874)
Q Consensus 542 sQ 543 (874)
-.
T Consensus 181 h~ 182 (236)
T 2pl3_A 181 DR 182 (236)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 22
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=98.67 E-value=1.3e-07 Score=97.91 Aligned_cols=129 Identities=17% Similarity=0.107 Sum_probs=83.0
Q ss_pred CCCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHh-------cCCCeEEEecCCHHHHHHHHHHHhcc
Q 002841 389 CNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYAT-------REDARLLVCAPSNSAADHLLEKILGE 461 (874)
Q Consensus 389 ~~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~-------~~~~rILv~ApSNsAaD~l~~rL~~~ 461 (874)
..+++.|++|+..++..+ .++|.+|.|||||.+..-.+.+.+.. ..+.++|+++||+..+..+.+++...
T Consensus 41 ~~~~~~Q~~~i~~~~~~~---~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 117 (228)
T 3iuy_A 41 LKPTPIQSQAWPIILQGI---DLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKY 117 (228)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHh
Confidence 368999999999998763 37999999999998866555554432 25678999999999999999998763
Q ss_pred cccccccccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhhh-cccCCCCccEEEEEc
Q 002841 462 KAVEVRENEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYA-EGVDRGHFSHIFLDE 540 (874)
Q Consensus 462 ~~~~~~~~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~~-~~~~~~~fd~ViIDE 540 (874)
.. .......+...... ..........++|+++|......+.. ......++++|||||
T Consensus 118 ~~---~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDE 175 (228)
T 3iuy_A 118 SY---KGLKSICIYGGRNR-------------------NGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDE 175 (228)
T ss_dssp CC---TTCCEEEECC-------------------------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECC
T ss_pred cc---cCceEEEEECCCCh-------------------HHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEEC
Confidence 11 11111111111000 00001112457899999876554332 233345799999999
Q ss_pred CC
Q 002841 541 AG 542 (874)
Q Consensus 541 As 542 (874)
|-
T Consensus 176 ah 177 (228)
T 3iuy_A 176 AD 177 (228)
T ss_dssp HH
T ss_pred HH
Confidence 93
No 23
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=98.64 E-value=2.2e-07 Score=94.30 Aligned_cols=135 Identities=16% Similarity=0.146 Sum_probs=85.4
Q ss_pred CCCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHh-cCCCeEEEecCCHHHHHHHHHHHhcccccccc
Q 002841 389 CNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYAT-REDARLLVCAPSNSAADHLLEKILGEKAVEVR 467 (874)
Q Consensus 389 ~~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~-~~~~rILv~ApSNsAaD~l~~rL~~~~~~~~~ 467 (874)
..+++.|++|+..++..+ .++|.+|.|||||.+....+.+.+.. ..+.++|+++||...+..+.+++..... ...
T Consensus 24 ~~~~~~Q~~~i~~~~~~~---~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~ 99 (206)
T 1vec_A 24 EKPSPIQEESIPIALSGR---DILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSK-HMG 99 (206)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTT-TSS
T ss_pred CCCCHHHHHHHHHHccCC---CEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHh-hcC
Confidence 368999999999999763 37999999999998776655554432 2456899999999999999888865211 111
Q ss_pred cccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhhhc-ccCCCCccEEEEEcCCCCCh
Q 002841 468 ENEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYAE-GVDRGHFSHIFLDEAGQASE 546 (874)
Q Consensus 468 ~~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~~~-~~~~~~fd~ViIDEAsQ~~e 546 (874)
...+..+..... ..... ......++|+++|.......... ......+++||||||-...+
T Consensus 100 ~~~~~~~~g~~~----~~~~~---------------~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~ 160 (206)
T 1vec_A 100 GAKVMATTGGTN----LRDDI---------------MRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLS 160 (206)
T ss_dssp SCCEEEECSSSC----HHHHH---------------HHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTS
T ss_pred CceEEEEeCCcc----HHHHH---------------HhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHh
Confidence 111211111100 00000 01124578999998765443332 23345799999999954443
No 24
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=98.62 E-value=1.4e-07 Score=96.93 Aligned_cols=131 Identities=19% Similarity=0.174 Sum_probs=84.7
Q ss_pred CCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcC-CCeEEEecCCHHHHHHHHHHHhccccccccc
Q 002841 390 NLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATRE-DARLLVCAPSNSAADHLLEKILGEKAVEVRE 468 (874)
Q Consensus 390 ~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~-~~rILv~ApSNsAaD~l~~rL~~~~~~~~~~ 468 (874)
.+++.|.+|+..++... .++|.+|.|||||.+....+.+.+.... ..++|+++||...++.+.+++.+.... ...
T Consensus 36 ~~~~~Q~~~i~~~~~~~---~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~-~~~ 111 (220)
T 1t6n_A 36 HPSEVQHECIPQAILGM---DVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKY-MPN 111 (220)
T ss_dssp CCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTT-STT
T ss_pred CCCHHHHHHHHHHhCCC---CEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhh-CCC
Confidence 48999999999999863 3799999999999988777766554332 348999999999999998888652111 111
Q ss_pred ccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhc--ccceEEEEechhhhhhhh-cccCCCCccEEEEEcCCCC
Q 002841 469 NEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAAL--VCYRIIISTYMSASLIYA-EGVDRGHFSHIFLDEAGQA 544 (874)
Q Consensus 469 ~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L--~~~~VI~~T~~sa~~l~~-~~~~~~~fd~ViIDEAsQ~ 544 (874)
..+..+..... .... .+.+ ..++|+++|......... ..+....+++||||||-..
T Consensus 112 ~~v~~~~g~~~----~~~~----------------~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~ 170 (220)
T 1t6n_A 112 VKVAVFFGGLS----IKKD----------------EEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKM 170 (220)
T ss_dssp CCEEEESCCSC----HHHH----------------HHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHH
T ss_pred ceEEEEeCCCC----hHHH----------------HHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHH
Confidence 12222211100 0000 0111 235899999876544332 2334567999999999444
No 25
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=98.60 E-value=1e-07 Score=104.93 Aligned_cols=131 Identities=17% Similarity=0.180 Sum_probs=88.8
Q ss_pred CCCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHhccccccccc
Q 002841 389 CNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILGEKAVEVRE 468 (874)
Q Consensus 389 ~~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~~~~~~~~~~ 468 (874)
..+++.|++|+..++.... .++|.+|.|||||.+....+.+++...++.++|+++|+...++.+.+++.+.... ..
T Consensus 27 ~~~~~~Q~~~i~~~~~~~~--~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~--~~ 102 (367)
T 1hv8_A 27 EKPTDIQMKVIPLFLNDEY--NIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGN--KN 102 (367)
T ss_dssp CSCCHHHHHHHHHHHHTCS--EEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCS--SC
T ss_pred CCCCHHHHHHHHHHhCCCC--CEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCC--CC
Confidence 3689999999999997532 3799999999999998877777665556789999999999999999998763111 11
Q ss_pred ccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhhhc-ccCCCCccEEEEEcCCC
Q 002841 469 NEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYAE-GVDRGHFSHIFLDEAGQ 543 (874)
Q Consensus 469 ~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~~~-~~~~~~fd~ViIDEAsQ 543 (874)
..+..+..... ..+ ....+..++|+++|.......... ......+++||||||-.
T Consensus 103 ~~v~~~~~~~~----~~~----------------~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~ 158 (367)
T 1hv8_A 103 LKIAKIYGGKA----IYP----------------QIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADE 158 (367)
T ss_dssp CCEEEECTTSC----HHH----------------HHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHH
T ss_pred ceEEEEECCcc----hHH----------------HHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchH
Confidence 11221111100 000 012334688999998765543322 23345789999999943
No 26
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=98.58 E-value=4.1e-07 Score=101.15 Aligned_cols=128 Identities=16% Similarity=0.100 Sum_probs=84.9
Q ss_pred CCCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHh-cCCCeEEEecCCHHHHHHHHHHHhcccccccc
Q 002841 389 CNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYAT-REDARLLVCAPSNSAADHLLEKILGEKAVEVR 467 (874)
Q Consensus 389 ~~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~-~~~~rILv~ApSNsAaD~l~~rL~~~~~~~~~ 467 (874)
..+++.|++|+..++...+ ..++|.+|.|||||.+....+...+.. ..+.++|+++|+...++...+++.+.... .
T Consensus 26 ~~~~~~Q~~~i~~~~~~~~-~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~--~ 102 (395)
T 3pey_A 26 QKPSKIQERALPLLLHNPP-RNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKF--T 102 (395)
T ss_dssp CSCCHHHHHHHHHHHCSSC-CCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTT--S
T ss_pred CCCCHHHHHHHHHHHcCCC-CeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhcc--c
Confidence 3689999999999997621 247999999999999877766655432 24569999999999999999988762110 0
Q ss_pred cccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhhh-cccCCCCccEEEEEcCC
Q 002841 468 ENEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYA-EGVDRGHFSHIFLDEAG 542 (874)
Q Consensus 468 ~~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~~-~~~~~~~fd~ViIDEAs 542 (874)
........... ........++|+++|......... ......++++||||||-
T Consensus 103 ~~~~~~~~~~~-----------------------~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah 155 (395)
T 3pey_A 103 KITSQLIVPDS-----------------------FEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEAD 155 (395)
T ss_dssp CCCEEEESTTS-----------------------SCTTSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHH
T ss_pred CeeEEEEecCc-----------------------hhhhccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChh
Confidence 00111111000 000112367899999876544332 23345579999999994
No 27
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=98.55 E-value=3.8e-07 Score=95.40 Aligned_cols=132 Identities=18% Similarity=0.245 Sum_probs=84.7
Q ss_pred CCCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhc--CCCeEEEecCCHHHHHHHHHHHhccccccc
Q 002841 389 CNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATR--EDARLLVCAPSNSAADHLLEKILGEKAVEV 466 (874)
Q Consensus 389 ~~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~--~~~rILv~ApSNsAaD~l~~rL~~~~~~~~ 466 (874)
..+++.|++|+..++..+ .+++.+|.|||||.+..-.+.+.+... .+.++|+++||...+..+.+++.+....
T Consensus 50 ~~~~~~Q~~~i~~~~~~~---~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~-- 124 (245)
T 3dkp_A 50 QMPTPIQMQAIPVMLHGR---ELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEG-- 124 (245)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTT--
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcc--
Confidence 358999999999999764 379999999999998666666555422 4558999999999999999988762110
Q ss_pred ccccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhhhcc---cCCCCccEEEEEcCCC
Q 002841 467 RENEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYAEG---VDRGHFSHIFLDEAGQ 543 (874)
Q Consensus 467 ~~~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~~~~---~~~~~fd~ViIDEAsQ 543 (874)
. -+++.. +...... ...........++|+++|......+.... +...++++||||||-.
T Consensus 125 --~-~~~~~~-------~~~~~~~--------~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~ 186 (245)
T 3dkp_A 125 --T-GFRIHM-------IHKAAVA--------AKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDK 186 (245)
T ss_dssp --S-CCCEEC-------CCHHHHH--------HTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHH
T ss_pred --c-CceEEE-------EecCccH--------HHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHH
Confidence 0 000000 0000000 00000112346789999987665443332 3445789999999943
No 28
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=98.53 E-value=5.8e-07 Score=104.45 Aligned_cols=151 Identities=11% Similarity=0.048 Sum_probs=98.1
Q ss_pred CCCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHhccccccccc
Q 002841 389 CNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILGEKAVEVRE 468 (874)
Q Consensus 389 ~~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~~~~~~~~~~ 468 (874)
..|++.|.+||..++... -.+|.||.|+|||.+....+...+.. ...++|+++|+...+++..+++.+... ...
T Consensus 112 ~~l~~~Q~~ai~~~~~~~---~~ll~~~tGsGKT~~~~~~~~~~~~~-~~~~vlvl~P~~~L~~Q~~~~~~~~~~--~~~ 185 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNR---RRILNLPTSAGRSLIQALLARYYLEN-YEGKILIIVPTTALTTQMADDFVDYRL--FSH 185 (510)
T ss_dssp ECCCHHHHHHHHHHHHHS---EEEEECCSTTTHHHHHHHHHHHHHHH-CSSEEEEEESSHHHHHHHHHHHHHTTS--SCG
T ss_pred CCCCHHHHHHHHHHHhcC---CcEEEeCCCCCHHHHHHHHHHHHHhC-CCCeEEEEECcHHHHHHHHHHHHHhhc--CCc
Confidence 379999999999999763 36999999999999998888777753 445999999999999999999975211 111
Q ss_pred ccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhhhcccCCCCccEEEEEcCCCCChhh
Q 002841 469 NEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYAEGVDRGHFSHIFLDEAGQASEPE 548 (874)
Q Consensus 469 ~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~~~~~~~~~fd~ViIDEAsQ~~epe 548 (874)
..+..+....... ......++|+++|..+..... ......|++||||||.......
T Consensus 186 ~~v~~~~~~~~~~----------------------~~~~~~~~I~i~T~~~l~~~~--~~~~~~~~liIiDE~H~~~~~~ 241 (510)
T 2oca_A 186 AMIKKIGGGASKD----------------------DKYKNDAPVVVGTWQTVVKQP--KEWFSQFGMMMNDECHLATGKS 241 (510)
T ss_dssp GGEEECGGGCCTT----------------------GGGCTTCSEEEEEHHHHTTSC--GGGGGGEEEEEEETGGGCCHHH
T ss_pred cceEEEecCCccc----------------------cccccCCcEEEEeHHHHhhch--hhhhhcCCEEEEECCcCCCccc
Confidence 2233322211100 002246789999987544321 1222468999999996666655
Q ss_pred hHHHhhccccCCcEEEEecCC
Q 002841 549 SMVPISSYCKKDTVVVLAGDP 569 (874)
Q Consensus 549 ~li~L~~l~~~~~~vVLvGDp 569 (874)
....+..+......+.|-|=|
T Consensus 242 ~~~il~~~~~~~~~l~lSATp 262 (510)
T 2oca_A 242 ISSIISGLNNCMFKFGLSGSL 262 (510)
T ss_dssp HHHHGGGCTTCCEEEEEESCG
T ss_pred HHHHHHhcccCcEEEEEEeCC
Confidence 443344332222234444544
No 29
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=98.52 E-value=2.8e-07 Score=96.13 Aligned_cols=129 Identities=20% Similarity=0.168 Sum_probs=82.1
Q ss_pred CCCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhc-CCCeEEEecCCHHHHHHHHHHHhcccccccc
Q 002841 389 CNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATR-EDARLLVCAPSNSAADHLLEKILGEKAVEVR 467 (874)
Q Consensus 389 ~~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~-~~~rILv~ApSNsAaD~l~~rL~~~~~~~~~ 467 (874)
..+++.|.+|+..++... -++|.+|.|||||.+.+..+.+.+... .+.++|+++||...+..+.+++...... .
T Consensus 51 ~~~~~~Q~~ai~~i~~~~---~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~--~ 125 (237)
T 3bor_A 51 EKPSAIQQRAIIPCIKGY---DVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDY--M 125 (237)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTT--T
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhh--c
Confidence 358999999999999763 379999999999988666665554322 4569999999999999999988753110 0
Q ss_pred cccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhc--ccceEEEEechhhhhhhh-cccCCCCccEEEEEcCC
Q 002841 468 ENEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAAL--VCYRIIISTYMSASLIYA-EGVDRGHFSHIFLDEAG 542 (874)
Q Consensus 468 ~~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L--~~~~VI~~T~~sa~~l~~-~~~~~~~fd~ViIDEAs 542 (874)
...+..+..... .... ...+ ..++|+++|......... ..+....+++||||||-
T Consensus 126 ~~~~~~~~g~~~----~~~~----------------~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah 183 (237)
T 3bor_A 126 GATCHACIGGTN----VRNE----------------MQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEAD 183 (237)
T ss_dssp TCCEEEECC---------------------------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHH
T ss_pred CceEEEEECCCc----hHHH----------------HHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCch
Confidence 111111111000 0000 0011 237899999766543322 23444579999999994
No 30
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=98.52 E-value=9.9e-07 Score=98.86 Aligned_cols=130 Identities=18% Similarity=0.104 Sum_probs=83.2
Q ss_pred CCCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhc-CCCeEEEecCCHHHHHHHHHHHhcccccccc
Q 002841 389 CNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATR-EDARLLVCAPSNSAADHLLEKILGEKAVEVR 467 (874)
Q Consensus 389 ~~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~-~~~rILv~ApSNsAaD~l~~rL~~~~~~~~~ 467 (874)
..+++.|.+|+..++...+ ..++|.+|.|||||.+....+.+.+... .+.++|+++|+...+..+.+++.+.... ..
T Consensus 46 ~~~~~~Q~~~i~~~~~~~~-~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-~~ 123 (412)
T 3fht_A 46 NRPSKIQENALPLMLAEPP-QNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKF-YP 123 (412)
T ss_dssp CSCCHHHHHHHHHHHSSSC-CCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTT-ST
T ss_pred CCCCHHHHHHHHHHhcCCC-CeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhh-cc
Confidence 4689999999999997521 2489999999999998766665544432 4458999999999999998887753111 11
Q ss_pred cccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhhhc--ccCCCCccEEEEEcCC
Q 002841 468 ENEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYAE--GVDRGHFSHIFLDEAG 542 (874)
Q Consensus 468 ~~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~~~--~~~~~~fd~ViIDEAs 542 (874)
...+.-...... . ........+|+++|.......... .+....+++||||||-
T Consensus 124 ~~~~~~~~~~~~-~---------------------~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah 178 (412)
T 3fht_A 124 ELKLAYAVRGNK-L---------------------ERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD 178 (412)
T ss_dssp TCCEEEECTTCC-C---------------------CTTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHH
T ss_pred cceEEEeecCcc-h---------------------hhhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHH
Confidence 111111111000 0 000123467999998766443321 2333579999999994
No 31
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=98.51 E-value=2.2e-07 Score=96.42 Aligned_cols=130 Identities=16% Similarity=0.125 Sum_probs=84.1
Q ss_pred CCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHH-HhcCCCeEEEecCCHHHHHHHHHHHhccccccccc
Q 002841 390 NLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLY-ATREDARLLVCAPSNSAADHLLEKILGEKAVEVRE 468 (874)
Q Consensus 390 ~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll-~~~~~~rILv~ApSNsAaD~l~~rL~~~~~~~~~~ 468 (874)
.+++.|.+|+..++..+ -++|.+|.|||||.+..-.+.+.+ ....+.++|+++||...+..+.+++...... ...
T Consensus 46 ~~~~~Q~~~i~~~~~~~---~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~-~~~ 121 (230)
T 2oxc_A 46 RPSPVQLKAIPLGRCGL---DLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIK-MEG 121 (230)
T ss_dssp SCCHHHHHHHHHHHTTC---CEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTT-STT
T ss_pred CCCHHHHHHHHHHhCCC---CEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcc-cCC
Confidence 58999999999998763 379999999999988555444433 3335679999999999999999988763110 101
Q ss_pred ccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhhh-cccCCCCccEEEEEcCCC
Q 002841 469 NEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYA-EGVDRGHFSHIFLDEAGQ 543 (874)
Q Consensus 469 ~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~~-~~~~~~~fd~ViIDEAsQ 543 (874)
..+..+.... ... .....+..++|+++|......+.. ..+...++++||||||-.
T Consensus 122 ~~~~~~~g~~------~~~--------------~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~ 177 (230)
T 2oxc_A 122 LECHVFIGGT------PLS--------------QDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADK 177 (230)
T ss_dssp CCEEEECTTS------CHH--------------HHHHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHH
T ss_pred ceEEEEeCCC------CHH--------------HHHHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchH
Confidence 1111111100 000 001223568999999876654332 223345789999999943
No 32
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=98.50 E-value=4e-07 Score=95.84 Aligned_cols=130 Identities=18% Similarity=0.117 Sum_probs=84.6
Q ss_pred CCCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhc-CCCeEEEecCCHHHHHHHHHHHhcccccccc
Q 002841 389 CNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATR-EDARLLVCAPSNSAADHLLEKILGEKAVEVR 467 (874)
Q Consensus 389 ~~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~-~~~rILv~ApSNsAaD~l~~rL~~~~~~~~~ 467 (874)
..+++.|.+|+..++..+ -+++.+|.|||||.+....+.+.+... .+.++|+++||...+..+.+++...... .
T Consensus 64 ~~~~~~Q~~~i~~i~~~~---~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~-~- 138 (249)
T 3ber_A 64 TKPTKIQIEAIPLALQGR---DIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSS-I- 138 (249)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGG-G-
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhcc-C-
Confidence 368999999999999763 379999999999998766666544433 4568999999999999999888652110 0
Q ss_pred cccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhhh--cccCCCCccEEEEEcCC
Q 002841 468 ENEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYA--EGVDRGHFSHIFLDEAG 542 (874)
Q Consensus 468 ~~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~~--~~~~~~~fd~ViIDEAs 542 (874)
...+..+..... . ... .......++|+++|......... ..+....+++||||||-
T Consensus 139 ~~~~~~~~g~~~------~-~~~------------~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah 196 (249)
T 3ber_A 139 GVQSAVIVGGID------S-MSQ------------SLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEAD 196 (249)
T ss_dssp TCCEEEECTTSC------H-HHH------------HHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHH
T ss_pred CeeEEEEECCCC------h-HHH------------HHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChh
Confidence 111111111100 0 000 01112467899999876644332 22345578999999994
No 33
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=98.50 E-value=3.5e-07 Score=97.10 Aligned_cols=129 Identities=19% Similarity=0.176 Sum_probs=83.2
Q ss_pred CCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHh-----cCCCeEEEecCCHHHHHHHHHHHhccccc
Q 002841 390 NLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYAT-----REDARLLVCAPSNSAADHLLEKILGEKAV 464 (874)
Q Consensus 390 ~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~-----~~~~rILv~ApSNsAaD~l~~rL~~~~~~ 464 (874)
.+++.|.+|+..++..++ +++.||.|||||.+..-.+.+.+.. ..+.++|+++||...|..+.+++.+....
T Consensus 76 ~~~~~Q~~~i~~~~~~~~---~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~ 152 (262)
T 3ly5_A 76 NMTEIQHKSIRPLLEGRD---LLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTH 152 (262)
T ss_dssp BCCHHHHHHHHHHHHTCC---CEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHhCCCc---EEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 489999999999998643 6999999999999877666665543 24678999999999999999988763111
Q ss_pred ccccccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhhhc--ccCCCCccEEEEEcCC
Q 002841 465 EVRENEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYAE--GVDRGHFSHIFLDEAG 542 (874)
Q Consensus 465 ~~~~~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~~~--~~~~~~fd~ViIDEAs 542 (874)
. ...+..+..... ..... ......++|+++|.......... .+....+++||||||-
T Consensus 153 ~--~~~~~~~~g~~~----~~~~~---------------~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah 211 (262)
T 3ly5_A 153 H--VHTYGLIMGGSN----RSAEA---------------QKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEAD 211 (262)
T ss_dssp C--CSCEEEECSSSC----HHHHH---------------HHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHH
T ss_pred c--CceEEEEECCCC----HHHHH---------------HHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChH
Confidence 0 001111110000 00000 01113478999997655433222 2344578999999993
No 34
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=98.47 E-value=1.2e-06 Score=91.93 Aligned_cols=130 Identities=15% Similarity=0.131 Sum_probs=84.4
Q ss_pred CCCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhc----------CCCeEEEecCCHHHHHHHHHHH
Q 002841 389 CNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATR----------EDARLLVCAPSNSAADHLLEKI 458 (874)
Q Consensus 389 ~~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~----------~~~rILv~ApSNsAaD~l~~rL 458 (874)
..+++.|.+|+..++..+ -+++.+|.|||||.+....+.+.+... .+.++|+++||...+..+.+++
T Consensus 44 ~~~~~~Q~~~i~~i~~~~---~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 120 (253)
T 1wrb_A 44 QRPTPIQKNAIPAILEHR---DIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSES 120 (253)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHH
Confidence 468999999999999863 379999999999998776666655422 2358999999999999999888
Q ss_pred hcccccccccccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhhhc-ccCCCCccEEE
Q 002841 459 LGEKAVEVRENEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYAE-GVDRGHFSHIF 537 (874)
Q Consensus 459 ~~~~~~~~~~~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~~~-~~~~~~fd~Vi 537 (874)
...... ....+..+..... ..... ......++|+++|.......... .+....+++||
T Consensus 121 ~~~~~~--~~~~~~~~~g~~~----~~~~~---------------~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lV 179 (253)
T 1wrb_A 121 QKFSLN--TPLRSCVVYGGAD----THSQI---------------REVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIV 179 (253)
T ss_dssp HHHHTT--SSCCEEEECSSSC----SHHHH---------------HHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEE
T ss_pred HHHhcc--CCceEEEEECCCC----HHHHH---------------HHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEE
Confidence 752110 0111111111100 00000 01124578999998776543332 23445789999
Q ss_pred EEcCC
Q 002841 538 LDEAG 542 (874)
Q Consensus 538 IDEAs 542 (874)
||||-
T Consensus 180 iDEah 184 (253)
T 1wrb_A 180 LDEAD 184 (253)
T ss_dssp EETHH
T ss_pred EeCHH
Confidence 99993
No 35
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=98.46 E-value=4.7e-07 Score=94.66 Aligned_cols=130 Identities=14% Similarity=0.013 Sum_probs=83.2
Q ss_pred CCCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHh------cCCCeEEEecCCHHHHHHHHHHHhccc
Q 002841 389 CNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYAT------REDARLLVCAPSNSAADHLLEKILGEK 462 (874)
Q Consensus 389 ~~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~------~~~~rILv~ApSNsAaD~l~~rL~~~~ 462 (874)
..+++.|.+|+..++..+ .+++.+|.|||||.+..-.+.+.+.. ..+.++|+++||+..+..+.+.+....
T Consensus 50 ~~~~~~Q~~~i~~~~~g~---~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 126 (242)
T 3fe2_A 50 TEPTAIQAQGWPVALSGL---DMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYC 126 (242)
T ss_dssp CSCCHHHHHHHHHHHHTC---CEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHH
Confidence 358999999999999763 37999999999999866655555443 235689999999999999988776521
Q ss_pred ccccccccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhhh-cccCCCCccEEEEEcC
Q 002841 463 AVEVRENEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYA-EGVDRGHFSHIFLDEA 541 (874)
Q Consensus 463 ~~~~~~~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~~-~~~~~~~fd~ViIDEA 541 (874)
.. ....+..+..... ..... ......++|+++|......+.. ......++++||||||
T Consensus 127 ~~--~~~~~~~~~g~~~----~~~~~---------------~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEa 185 (242)
T 3fe2_A 127 RA--CRLKSTCIYGGAP----KGPQI---------------RDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEA 185 (242)
T ss_dssp HH--TTCCEEEECTTSC----HHHHH---------------HHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTH
T ss_pred hh--cCceEEEEECCCC----hHHHH---------------HHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCH
Confidence 10 0111111111000 00000 0111357899999876643332 2334457899999999
Q ss_pred C
Q 002841 542 G 542 (874)
Q Consensus 542 s 542 (874)
-
T Consensus 186 h 186 (242)
T 3fe2_A 186 D 186 (242)
T ss_dssp H
T ss_pred H
Confidence 4
No 36
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=98.45 E-value=1.9e-07 Score=95.95 Aligned_cols=132 Identities=18% Similarity=0.124 Sum_probs=82.8
Q ss_pred CCCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhc-CCCeEEEecCCHHHHHHHHHHHhcccccccc
Q 002841 389 CNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATR-EDARLLVCAPSNSAADHLLEKILGEKAVEVR 467 (874)
Q Consensus 389 ~~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~-~~~rILv~ApSNsAaD~l~~rL~~~~~~~~~ 467 (874)
..+++.|.+|+..++..+ .+++.+|.|||||.+....+.+.+... .+.++|+++||...+..+.+++.+.......
T Consensus 25 ~~~~~~Q~~~i~~~~~~~---~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 101 (219)
T 1q0u_A 25 YKPTEIQERIIPGALRGE---SMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPK 101 (219)
T ss_dssp CSCCHHHHHHHHHHHHTC---CEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCG
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhccc
Confidence 357999999999999763 379999999999998666665554322 4568999999999999999888653111000
Q ss_pred --cccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhhhc-ccCCCCccEEEEEcCC
Q 002841 468 --ENEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYAE-GVDRGHFSHIFLDEAG 542 (874)
Q Consensus 468 --~~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~~~-~~~~~~fd~ViIDEAs 542 (874)
...+..+.... . .. ... ...-..++|+++|.......... .+....+++||||||-
T Consensus 102 ~~~~~~~~~~g~~------~--~~------~~~-----~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah 160 (219)
T 1q0u_A 102 DRMIVARCLIGGT------D--KQ------KAL-----EKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEAD 160 (219)
T ss_dssp GGCCCEEEECCCS------H--HH------HTT-----CCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHH
T ss_pred ccceEEEEEeCCC------C--HH------HHH-----HHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCch
Confidence 01111111100 0 00 000 00113578999998765443322 2334578999999994
No 37
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=98.44 E-value=6e-07 Score=106.47 Aligned_cols=150 Identities=19% Similarity=0.228 Sum_probs=82.3
Q ss_pred CCCCHHHHHHHHHHhcc--CCCCCEEEEcCCCCChhHHHHHHHHHHHHhc-------CCCeEEEecCCHHHHHHHH-HHH
Q 002841 389 CNLNEEQMCSIEKILGL--KGAPPYLIYGPPGTGKTMTLVEAILQLYATR-------EDARLLVCAPSNSAADHLL-EKI 458 (874)
Q Consensus 389 ~~LN~~Q~~AV~~il~~--~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~-------~~~rILv~ApSNsAaD~l~-~rL 458 (874)
..|.+.|.+||..++.. .+..-.+|.+|.|||||.+++.++..++... ...++|+++|++..+++.. +.+
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 47899999999998751 1112379999999999999988888888765 6789999999999988887 433
Q ss_pred hcccccccccccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhh-----hcccCCCCc
Q 002841 459 LGEKAVEVRENEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIY-----AEGVDRGHF 533 (874)
Q Consensus 459 ~~~~~~~~~~~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~-----~~~~~~~~f 533 (874)
... . ..+..+.. ...-..++|+++|........ ...+...+|
T Consensus 257 ~~~-----~-~~~~~~~~---------------------------~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~ 303 (590)
T 3h1t_A 257 TPF-----G-DARHKIEG---------------------------GKVVKSREIYFAIYQSIASDERRPGLYKEFPQDFF 303 (590)
T ss_dssp TTT-----C-SSEEECCC-----------------------------CCSSCSEEEEEGGGC------CCGGGGSCTTSC
T ss_pred Hhc-----c-hhhhhhhc---------------------------cCCCCCCcEEEEEhhhhccccccccccccCCCCcc
Confidence 321 0 01111110 011145689999987654422 223455689
Q ss_pred cEEEEEcCCCCChh--hhHHHhhccccCCcEEEEecCCCc
Q 002841 534 SHIFLDEAGQASEP--ESMVPISSYCKKDTVVVLAGDPMQ 571 (874)
Q Consensus 534 d~ViIDEAsQ~~ep--e~li~L~~l~~~~~~vVLvGDp~Q 571 (874)
++||||||-..... ..+..+.........+.|-|=|.+
T Consensus 304 ~lvIiDEaH~~~~~~~~~~~~il~~~~~~~~l~lTATP~~ 343 (590)
T 3h1t_A 304 DLIIIDECHRGSARDNSNWREILEYFEPAFQIGMTATPLR 343 (590)
T ss_dssp SEEEESCCC---------CHHHHHHSTTSEEEEEESSCSC
T ss_pred CEEEEECCccccccchHHHHHHHHhCCcceEEEecccccc
Confidence 99999999655542 222222222222335666666654
No 38
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=98.43 E-value=1.3e-06 Score=99.36 Aligned_cols=131 Identities=18% Similarity=0.124 Sum_probs=91.9
Q ss_pred CCCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHhccccccccc
Q 002841 389 CNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILGEKAVEVRE 468 (874)
Q Consensus 389 ~~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~~~~~~~~~~ 468 (874)
..|.+.|++++..++.. ..+|.+|.|+|||.+....+...+. .++.++|+++|+.+.+++..+++.+..+ ...
T Consensus 8 ~~l~~~Q~~~i~~~~~~----~~ll~~~tG~GKT~~~~~~~~~~~~-~~~~~~liv~P~~~L~~q~~~~~~~~~~--~~~ 80 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKET----NCLIVLPTGLGKTLIAMMIAEYRLT-KYGGKVLMLAPTKPLVLQHAESFRRLFN--LPP 80 (494)
T ss_dssp HCCCHHHHHHHHHGGGS----CEEEECCTTSCHHHHHHHHHHHHHH-HSCSCEEEECSSHHHHHHHHHHHHHHBC--SCG
T ss_pred CCccHHHHHHHHHHhhC----CEEEEcCCCCCHHHHHHHHHHHHHh-cCCCeEEEEECCHHHHHHHHHHHHHHhC--cch
Confidence 36899999999999885 3799999999999999888887776 4678999999999999999999986321 111
Q ss_pred ccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhhh-cccCCCCccEEEEEcCCCCCh
Q 002841 469 NEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYA-EGVDRGHFSHIFLDEAGQASE 546 (874)
Q Consensus 469 ~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~~-~~~~~~~fd~ViIDEAsQ~~e 546 (874)
..+..+..... ... .......++|+++|......... ..+....|++||||||-....
T Consensus 81 ~~v~~~~g~~~------~~~--------------~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~ 139 (494)
T 1wp9_A 81 EKIVALTGEKS------PEE--------------RSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVG 139 (494)
T ss_dssp GGEEEECSCSC------HHH--------------HHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCST
T ss_pred hheEEeeCCcc------hhh--------------hhhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCC
Confidence 12332222111 000 01122467899999877654332 234456899999999965553
No 39
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=98.43 E-value=1.6e-06 Score=94.06 Aligned_cols=130 Identities=18% Similarity=0.102 Sum_probs=81.5
Q ss_pred CCCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHH-hcCCCeEEEecCCHHHHHHHHHHHhcccccccc
Q 002841 389 CNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYA-TREDARLLVCAPSNSAADHLLEKILGEKAVEVR 467 (874)
Q Consensus 389 ~~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~-~~~~~rILv~ApSNsAaD~l~~rL~~~~~~~~~ 467 (874)
..+++.|.+|+..++...+ .-+++.+|.|||||.+.+-.+.+.+. .....++|+++||...|..+.+.+...... ..
T Consensus 113 ~~pt~iQ~~ai~~il~~~~-~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~-~~ 190 (300)
T 3fmo_B 113 NRPSKIQENALPLMLAEPP-QNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKF-YP 190 (300)
T ss_dssp CSCCHHHHHHHHHHTSSSC-CCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTT-ST
T ss_pred CCCCHHHHHHHHHHHcCCC-CeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhh-CC
Confidence 3578999999999997521 23799999999999886544444333 223458999999999999998877653111 11
Q ss_pred cccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhhhc--ccCCCCccEEEEEcCC
Q 002841 468 ENEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYAE--GVDRGHFSHIFLDEAG 542 (874)
Q Consensus 468 ~~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~~~--~~~~~~fd~ViIDEAs 542 (874)
...+.-+...... ........+|+++|......+... .+...++++||||||-
T Consensus 191 ~~~~~~~~~~~~~----------------------~~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad 245 (300)
T 3fmo_B 191 ELKLAYAVRGNKL----------------------ERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD 245 (300)
T ss_dssp TCCEEEESTTCCC----------------------CTTCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHH
T ss_pred CcEEEEEeCCccH----------------------hhhhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHH
Confidence 1111111111000 001124567999998765443322 3334578999999994
No 40
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=98.42 E-value=1.2e-06 Score=98.01 Aligned_cols=135 Identities=16% Similarity=0.107 Sum_probs=87.1
Q ss_pred CCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhc-CCCeEEEecCCHHHHHHHHHHHhccccccccc
Q 002841 390 NLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATR-EDARLLVCAPSNSAADHLLEKILGEKAVEVRE 468 (874)
Q Consensus 390 ~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~-~~~rILv~ApSNsAaD~l~~rL~~~~~~~~~~ 468 (874)
.|++.|++|+..++... .++|.+|.|||||.+....+.+.+... .+.++|+++|+...+..+.+++...... . .
T Consensus 43 ~~~~~Q~~~i~~i~~~~---~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-~-~ 117 (400)
T 1s2m_A 43 KPSPIQEEAIPVAITGR---DILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKH-C-G 117 (400)
T ss_dssp SCCHHHHHHHHHHHHTC---CEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTT-T-T
T ss_pred CCCHHHHHHHHHHhcCC---CEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcc-c-C
Confidence 58999999999999763 379999999999988776666655432 4568999999999999999888753110 0 1
Q ss_pred ccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhhhc-ccCCCCccEEEEEcCCCCChh
Q 002841 469 NEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYAE-GVDRGHFSHIFLDEAGQASEP 547 (874)
Q Consensus 469 ~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~~~-~~~~~~fd~ViIDEAsQ~~ep 547 (874)
..+..+..... ..... ......++|+++|.......... ......+++||||||-.....
T Consensus 118 ~~~~~~~g~~~----~~~~~---------------~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~ 178 (400)
T 1s2m_A 118 ISCMVTTGGTN----LRDDI---------------LRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSR 178 (400)
T ss_dssp CCEEEECSSSC----HHHHH---------------HHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSH
T ss_pred ceEEEEeCCcc----hHHHH---------------HHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhh
Confidence 11111111100 00000 01124678999998765433322 233457899999999545554
Q ss_pred h
Q 002841 548 E 548 (874)
Q Consensus 548 e 548 (874)
.
T Consensus 179 ~ 179 (400)
T 1s2m_A 179 D 179 (400)
T ss_dssp H
T ss_pred c
Confidence 3
No 41
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=98.39 E-value=1.1e-06 Score=95.40 Aligned_cols=124 Identities=19% Similarity=0.226 Sum_probs=82.0
Q ss_pred CCCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHhccccccccc
Q 002841 389 CNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILGEKAVEVRE 468 (874)
Q Consensus 389 ~~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~~~~~~~~~~ 468 (874)
..|++.|++|+..++..+ .++|.+|.|+|||.+....+.+ .+.++|+++|+...+.++.+++.+.... ..
T Consensus 15 ~~l~~~Q~~~i~~i~~~~---~~lv~~~TGsGKT~~~~~~~~~-----~~~~~liv~P~~~L~~q~~~~~~~~~~~--~~ 84 (337)
T 2z0m_A 15 KNFTEVQSKTIPLMLQGK---NVVVRAKTGSGKTAAYAIPILE-----LGMKSLVVTPTRELTRQVASHIRDIGRY--MD 84 (337)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCTTSSHHHHHHHHHHH-----HTCCEEEECSSHHHHHHHHHHHHHHTTT--SC
T ss_pred CCCCHHHHHHHHHHhcCC---CEEEEcCCCCcHHHHHHHHHHh-----hcCCEEEEeCCHHHHHHHHHHHHHHhhh--cC
Confidence 358999999999998753 4799999999999876655443 2578999999999999999998752110 01
Q ss_pred ccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhhhc-ccCCCCccEEEEEcCC
Q 002841 469 NEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYAE-GVDRGHFSHIFLDEAG 542 (874)
Q Consensus 469 ~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~~~-~~~~~~fd~ViIDEAs 542 (874)
..+..+..... .. .....+..++|+++|.......... .+....+++||||||-
T Consensus 85 ~~~~~~~~~~~------~~--------------~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah 139 (337)
T 2z0m_A 85 TKVAEVYGGMP------YK--------------AQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEAD 139 (337)
T ss_dssp CCEEEECTTSC------HH--------------HHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHH
T ss_pred CcEEEEECCcc------hH--------------HHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChH
Confidence 11111111100 00 0012234588999998766543322 2334578999999994
No 42
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=98.38 E-value=1.2e-06 Score=98.40 Aligned_cols=132 Identities=19% Similarity=0.147 Sum_probs=85.5
Q ss_pred CCCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhc-CCCeEEEecCCHHHHHHHHHHHhcccccccc
Q 002841 389 CNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATR-EDARLLVCAPSNSAADHLLEKILGEKAVEVR 467 (874)
Q Consensus 389 ~~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~-~~~rILv~ApSNsAaD~l~~rL~~~~~~~~~ 467 (874)
..+++.|++|+..++...+ ++|.+|.|||||.+....+.+.+... .+.++|+++|+...+..+.+++...... .
T Consensus 61 ~~~~~~Q~~~i~~~~~~~~---~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~--~ 135 (414)
T 3eiq_A 61 EKPSAIQQRAILPCIKGYD---VIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDY--M 135 (414)
T ss_dssp CSCCHHHHHHHHHHHTTCC---EEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGG--S
T ss_pred CCCCHHHHHHhHHHhCCCC---EEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcc--c
Confidence 3589999999999998643 79999999999998777666655433 5678999999999999999988763111 0
Q ss_pred cccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhh-hcccCCCCccEEEEEcCCC
Q 002841 468 ENEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIY-AEGVDRGHFSHIFLDEAGQ 543 (874)
Q Consensus 468 ~~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~-~~~~~~~~fd~ViIDEAsQ 543 (874)
...+..+.... ........ .....++|+++|........ ...+....+++||||||-.
T Consensus 136 ~~~~~~~~~~~----~~~~~~~~--------------~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~ 194 (414)
T 3eiq_A 136 GASCHACIGGT----NVRAEVQK--------------LQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADE 194 (414)
T ss_dssp CCCEEECCCCT----THHHHHHH--------------HTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHH
T ss_pred CceEEEEECCc----chHHHHHH--------------HhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHH
Confidence 11111111100 00000000 01145789999987654332 2334456799999999943
No 43
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=98.38 E-value=1.7e-06 Score=99.63 Aligned_cols=130 Identities=18% Similarity=0.114 Sum_probs=81.3
Q ss_pred CCCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhc-CCCeEEEecCCHHHHHHHHHHHhcccccccc
Q 002841 389 CNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATR-EDARLLVCAPSNSAADHLLEKILGEKAVEVR 467 (874)
Q Consensus 389 ~~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~-~~~rILv~ApSNsAaD~l~~rL~~~~~~~~~ 467 (874)
..+++.|.+|+..++...+ ..+++.||.|||||.+....+.+.+... ...++|+++|+...+..+.+++...... ..
T Consensus 113 ~~p~~~Q~~ai~~il~~~~-~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~-~~ 190 (479)
T 3fmp_B 113 NRPSKIQENALPLMLAEPP-QNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKF-YP 190 (479)
T ss_dssp CSCCHHHHHHHHHHTSBSC-CEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTT-ST
T ss_pred CCCCHHHHHHHHHHHcCCC-CcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhh-CC
Confidence 3578889999999997521 2489999999999998666565544332 3348999999999999998777652111 01
Q ss_pred cccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhhhc--ccCCCCccEEEEEcCC
Q 002841 468 ENEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYAE--GVDRGHFSHIFLDEAG 542 (874)
Q Consensus 468 ~~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~~~--~~~~~~fd~ViIDEAs 542 (874)
...+.-...... .. .......+|+++|......+... .+....+++||||||-
T Consensus 191 ~~~~~~~~~~~~-~~---------------------~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah 245 (479)
T 3fmp_B 191 ELKLAYAVRGNK-LE---------------------RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD 245 (479)
T ss_dssp TCCEEEESTTCC-CC---------------------TTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHH
T ss_pred CceEEEEeCCcc-cc---------------------ccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHH
Confidence 111111111000 00 00112457999998766443322 3334578999999994
No 44
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=98.37 E-value=2.9e-06 Score=97.47 Aligned_cols=138 Identities=20% Similarity=0.166 Sum_probs=93.5
Q ss_pred CCCCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHhcccccccc
Q 002841 388 SCNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILGEKAVEVR 467 (874)
Q Consensus 388 ~~~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~~~~~~~~~ 467 (874)
...|++.|.+|+..++... -.+|.||.|+|||.+....+..+ +.++||++|+...+.+..+++.+. +
T Consensus 91 ~~~l~~~Q~~ai~~i~~~~---~~ll~~~TGsGKT~~~l~~i~~~-----~~~~Lvl~P~~~L~~Q~~~~~~~~-~---- 157 (472)
T 2fwr_A 91 EISLRDYQEKALERWLVDK---RGCIVLPTGSGKTHVAMAAINEL-----STPTLIVVPTLALAEQWKERLGIF-G---- 157 (472)
T ss_dssp CCCBCHHHHHHHHHHTTTT---EEEEECCTTSCHHHHHHHHHHHH-----CSCEEEEESSHHHHHHHHHHGGGG-C----
T ss_pred CCCcCHHHHHHHHHHHhcC---CEEEEeCCCCCHHHHHHHHHHHc-----CCCEEEEECCHHHHHHHHHHHHhC-C----
Confidence 4579999999999998753 27999999999999987766653 579999999999999999999761 1
Q ss_pred ccc-EEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhhhcccCCCCccEEEEEcCCCCCh
Q 002841 468 ENE-IFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYAEGVDRGHFSHIFLDEAGQASE 546 (874)
Q Consensus 468 ~~~-i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~~~~~~~~~fd~ViIDEAsQ~~e 546 (874)
.. +..+..... ...+|+++|......... .+ ...|++||||||-....
T Consensus 158 -~~~v~~~~g~~~----------------------------~~~~Ivv~T~~~l~~~~~-~~-~~~~~liIvDEaH~~~~ 206 (472)
T 2fwr_A 158 -EEYVGEFSGRIK----------------------------ELKPLTVSTYDSAYVNAE-KL-GNRFMLLIFDEVHHLPA 206 (472)
T ss_dssp -GGGEEEBSSSCB----------------------------CCCSEEEEEHHHHHHTHH-HH-TTTCSEEEEETGGGTTS
T ss_pred -CcceEEECCCcC----------------------------CcCCEEEEEcHHHHHHHH-Hh-cCCCCEEEEECCcCCCC
Confidence 11 222221110 135789999876543322 11 23699999999976666
Q ss_pred hhhHHHhhccccCCcEEEEecCCC
Q 002841 547 PESMVPISSYCKKDTVVVLAGDPM 570 (874)
Q Consensus 547 pe~li~L~~l~~~~~~vVLvGDp~ 570 (874)
+..-..+. .......+.|-|=|.
T Consensus 207 ~~~~~~~~-~~~~~~~l~lSATp~ 229 (472)
T 2fwr_A 207 ESYVQIAQ-MSIAPFRLGLTATFE 229 (472)
T ss_dssp TTTHHHHH-TCCCSEEEEEESCCC
T ss_pred hHHHHHHH-hcCCCeEEEEecCcc
Confidence 54433333 333333455566665
No 45
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=98.36 E-value=1.4e-06 Score=97.05 Aligned_cols=133 Identities=20% Similarity=0.174 Sum_probs=85.6
Q ss_pred CCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhc-CCCeEEEecCCHHHHHHHHHHHhccccccccc
Q 002841 390 NLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATR-EDARLLVCAPSNSAADHLLEKILGEKAVEVRE 468 (874)
Q Consensus 390 ~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~-~~~rILv~ApSNsAaD~l~~rL~~~~~~~~~~ 468 (874)
.+.+.|++|+..++... .++|.+|.|+|||.+....+.+.+... .+.++|+++|+...++++.+++.+.... ...
T Consensus 30 ~~~~~Q~~~i~~~~~~~---~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-~~~ 105 (391)
T 1xti_A 30 HPSEVQHECIPQAILGM---DVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKY-MPN 105 (391)
T ss_dssp SCCHHHHHHHHHHTTTC---CEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTT-CTT
T ss_pred CCCHHHHHHHHHHhcCC---cEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhh-CCC
Confidence 58999999999998753 379999999999988776666554432 3459999999999999998888652111 111
Q ss_pred ccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhc--ccceEEEEechhhhhhhh-cccCCCCccEEEEEcCCCCC
Q 002841 469 NEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAAL--VCYRIIISTYMSASLIYA-EGVDRGHFSHIFLDEAGQAS 545 (874)
Q Consensus 469 ~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L--~~~~VI~~T~~sa~~l~~-~~~~~~~fd~ViIDEAsQ~~ 545 (874)
..+..+..... .... ...+ ..++|+++|......... .......+++||||||-...
T Consensus 106 ~~~~~~~g~~~----~~~~----------------~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~ 165 (391)
T 1xti_A 106 VKVAVFFGGLS----IKKD----------------EEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKML 165 (391)
T ss_dssp CCEEEECTTSC----HHHH----------------HHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHT
T ss_pred eEEEEEeCCCC----HHHH----------------HHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHh
Confidence 12222211110 0000 0011 236899999876654332 22345689999999995444
Q ss_pred h
Q 002841 546 E 546 (874)
Q Consensus 546 e 546 (874)
.
T Consensus 166 ~ 166 (391)
T 1xti_A 166 E 166 (391)
T ss_dssp S
T ss_pred h
Confidence 3
No 46
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=98.34 E-value=1.9e-06 Score=100.64 Aligned_cols=134 Identities=14% Similarity=0.139 Sum_probs=90.0
Q ss_pred CCCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcC---CCeEEEecCCHHHHHHHHHHHhcccccc
Q 002841 389 CNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATRE---DARLLVCAPSNSAADHLLEKILGEKAVE 465 (874)
Q Consensus 389 ~~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~---~~rILv~ApSNsAaD~l~~rL~~~~~~~ 465 (874)
..|.+.|.+|+..++... -++|.+|.|||||.+....+.+.+...+ +.++|+++||...+....+.+......
T Consensus 6 ~~~~~~Q~~~i~~~~~~~---~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~- 81 (556)
T 4a2p_A 6 KKARSYQIELAQPAINGK---NALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER- 81 (556)
T ss_dssp --CCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG-
T ss_pred CCCCHHHHHHHHHHHcCC---CEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcc-
Confidence 368999999999999753 3799999999999998888888877655 779999999999999999888762110
Q ss_pred cccccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhhhcc-c-CCCCccEEEEEcCCC
Q 002841 466 VRENEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYAEG-V-DRGHFSHIFLDEAGQ 543 (874)
Q Consensus 466 ~~~~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~~~~-~-~~~~fd~ViIDEAsQ 543 (874)
....+..+...... .. ........++|+++|........... + ....+++||||||-.
T Consensus 82 -~~~~~~~~~g~~~~----~~---------------~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~ 141 (556)
T 4a2p_A 82 -QGYSVQGISGENFS----NV---------------SVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHN 141 (556)
T ss_dssp -GTCCEEECCCC------------------------CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGG
T ss_pred -cCceEEEEeCCCCc----ch---------------hHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcc
Confidence 01122222111100 00 00112245789999988765544332 2 356799999999965
Q ss_pred CCh
Q 002841 544 ASE 546 (874)
Q Consensus 544 ~~e 546 (874)
...
T Consensus 142 ~~~ 144 (556)
T 4a2p_A 142 TTG 144 (556)
T ss_dssp CST
T ss_pred cCC
Confidence 553
No 47
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=98.34 E-value=1e-06 Score=99.41 Aligned_cols=126 Identities=18% Similarity=0.250 Sum_probs=83.2
Q ss_pred CCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHhcccccccccc
Q 002841 390 NLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILGEKAVEVREN 469 (874)
Q Consensus 390 ~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~~~~~~~~~~~ 469 (874)
.+++.|.+|+..++..+ -++|.+|.|||||.+....+.+.. ..+.++|+++||...+..+.+++..... ...
T Consensus 21 ~~~~~Q~~~i~~i~~~~---~~lv~apTGsGKT~~~l~~~~~~~--~~~~~~lil~Pt~~L~~q~~~~~~~~~~---~~~ 92 (414)
T 3oiy_A 21 DLTGYQRLWAKRIVQGK---SFTMVAPTGVGKTTFGMMTALWLA--RKGKKSALVFPTVTLVKQTLERLQKLAD---EKV 92 (414)
T ss_dssp CCCHHHHHHHHHHTTTC---CEECCSCSSSSHHHHHHHHHHHHH--TTTCCEEEEESSHHHHHHHHHHHHHHCC---SSC
T ss_pred CCCHHHHHHHHHHhcCC---CEEEEeCCCCCHHHHHHHHHHHHh--cCCCEEEEEECCHHHHHHHHHHHHHHcc---CCc
Confidence 56899999999999764 379999999999996555555544 3678999999999999999999986311 111
Q ss_pred cEEEecCCCCCCcCCchhhhhhccccchhccCCchhhc--ccceEEEEechhhhhhhhcccCCCCccEEEEEcC
Q 002841 470 EIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAAL--VCYRIIISTYMSASLIYAEGVDRGHFSHIFLDEA 541 (874)
Q Consensus 470 ~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L--~~~~VI~~T~~sa~~l~~~~~~~~~fd~ViIDEA 541 (874)
.+..+.... ...-.. .....+ ..++|+++|.......... +...++++||||||
T Consensus 93 ~v~~~~g~~------~~~~~~-----------~~~~~l~~~~~~Iiv~Tp~~l~~~l~~-~~~~~~~~iViDEa 148 (414)
T 3oiy_A 93 KIFGFYSSM------KKEEKE-----------KFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFDFVFVDDV 148 (414)
T ss_dssp CEEECCTTS------CHHHHH-----------HHHHHHHHTCCSEEEEEHHHHHHCHHH-HTTCCCSEEEESCH
T ss_pred eEEEEECCC------ChhhHH-----------HHHHHhhcCCCCEEEECHHHHHHHHHH-hccccccEEEEeCh
Confidence 222222111 000000 000111 2378999998766433322 44568999999999
No 48
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=98.34 E-value=1.2e-06 Score=97.54 Aligned_cols=130 Identities=19% Similarity=0.121 Sum_probs=84.8
Q ss_pred CCCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhc-CCCeEEEecCCHHHHHHHHHHHhcccccccc
Q 002841 389 CNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATR-EDARLLVCAPSNSAADHLLEKILGEKAVEVR 467 (874)
Q Consensus 389 ~~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~-~~~rILv~ApSNsAaD~l~~rL~~~~~~~~~ 467 (874)
..|++.|++|+..++... .++|.+|.|||||.+....+.+.+... .+.++|+++|+...++.+.+++.+.... .
T Consensus 42 ~~~~~~Q~~~i~~i~~~~---~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~--~ 116 (394)
T 1fuu_A 42 EEPSAIQQRAIMPIIEGH---DVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFH--M 116 (394)
T ss_dssp CSCCHHHHHHHHHHHHTC---CEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTT--S
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhcc--C
Confidence 368999999999999863 379999999999988666665554332 4569999999999999999888652110 0
Q ss_pred cccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhhh-cccCCCCccEEEEEcCCC
Q 002841 468 ENEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYA-EGVDRGHFSHIFLDEAGQ 543 (874)
Q Consensus 468 ~~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~~-~~~~~~~fd~ViIDEAsQ 543 (874)
...+..+..... ... ....+..++|+++|......... ..+....+++||||||-.
T Consensus 117 ~~~~~~~~g~~~----~~~----------------~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~ 173 (394)
T 1fuu_A 117 DIKVHACIGGTS----FVE----------------DAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADE 173 (394)
T ss_dssp CCCEEEECSSCC----HHH----------------HHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH
T ss_pred CeeEEEEeCCCc----hHH----------------HHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHH
Confidence 111111111000 000 01223467899999876543322 234456799999999943
No 49
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=98.32 E-value=2.7e-06 Score=95.55 Aligned_cols=132 Identities=17% Similarity=0.153 Sum_probs=85.2
Q ss_pred CCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHh-cCCCeEEEecCCHHHHHHHHHHHhccccccccc
Q 002841 390 NLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYAT-REDARLLVCAPSNSAADHLLEKILGEKAVEVRE 468 (874)
Q Consensus 390 ~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~-~~~~rILv~ApSNsAaD~l~~rL~~~~~~~~~~ 468 (874)
.+++.|++|+..++..+ .+++.+|.|||||.+....+.+.+.. ..+.++|+++||...+..+.+++...... ..
T Consensus 59 ~~~~~Q~~ai~~i~~~~---~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~--~~ 133 (410)
T 2j0s_A 59 KPSAIQQRAIKQIIKGR---DVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDY--MN 133 (410)
T ss_dssp SCCHHHHHHHHHHHTTC---CEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTT--TT
T ss_pred CCCHHHHHHHHHHhCCC---CEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhcc--CC
Confidence 58999999999999763 37999999999999887767665532 25679999999999999999988752110 01
Q ss_pred ccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhhh-cccCCCCccEEEEEcCCCCC
Q 002841 469 NEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYA-EGVDRGHFSHIFLDEAGQAS 545 (874)
Q Consensus 469 ~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~~-~~~~~~~fd~ViIDEAsQ~~ 545 (874)
..+..+..... ..... ...-..++|+++|......... ..+....+++||||||-...
T Consensus 134 ~~~~~~~g~~~----~~~~~---------------~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~ 192 (410)
T 2j0s_A 134 VQCHACIGGTN----VGEDI---------------RKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEML 192 (410)
T ss_dssp CCEEEECTTSC----HHHHH---------------HHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHT
T ss_pred eEEEEEECCCC----HHHHH---------------HHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHH
Confidence 11111111000 00000 0111346899999866543332 23445679999999994333
No 50
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=98.31 E-value=1.1e-06 Score=102.42 Aligned_cols=129 Identities=18% Similarity=0.188 Sum_probs=83.9
Q ss_pred CCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhc-CCCeEEEecCCHHHHHHHHHHHhccccccccc
Q 002841 390 NLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATR-EDARLLVCAPSNSAADHLLEKILGEKAVEVRE 468 (874)
Q Consensus 390 ~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~-~~~rILv~ApSNsAaD~l~~rL~~~~~~~~~~ 468 (874)
.+++.|.+|+..++... ...++|.||.|||||.+....+.+.+... ++.++|+++|++..++.+.+++.+..... .
T Consensus 141 ~p~~~Q~~ai~~i~~~~-~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~--~ 217 (508)
T 3fho_A 141 XXXKIQEKALPLLLSNP-PRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYT--E 217 (508)
T ss_dssp ECCCTTSSSHHHHHCSS-CCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTS--S
T ss_pred CcHHHHHHHHHHHHcCC-CCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCcc--C
Confidence 47889999999999761 13489999999999998776666655433 35699999999999999999997631100 0
Q ss_pred ccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhh-hcccCCCCccEEEEEcCCCC
Q 002841 469 NEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIY-AEGVDRGHFSHIFLDEAGQA 544 (874)
Q Consensus 469 ~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~-~~~~~~~~fd~ViIDEAsQ~ 544 (874)
..+ ...... . ........++|+++|........ ...+....+++||||||-..
T Consensus 218 ~~~-~~~~~~------------------~----~~~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~ 271 (508)
T 3fho_A 218 VKT-AFGIKD------------------S----VPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNM 271 (508)
T ss_dssp CCE-EC--------------------------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHH
T ss_pred eeE-EEEeCC------------------c----ccccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhh
Confidence 000 000000 0 00011136789999987654332 23344567999999999433
No 51
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=98.31 E-value=1.4e-06 Score=101.62 Aligned_cols=134 Identities=14% Similarity=0.052 Sum_probs=90.9
Q ss_pred CCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcC---CCeEEEecCCHHHHHHHHHHHhccccccc
Q 002841 390 NLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATRE---DARLLVCAPSNSAADHLLEKILGEKAVEV 466 (874)
Q Consensus 390 ~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~---~~rILv~ApSNsAaD~l~~rL~~~~~~~~ 466 (874)
.|.+.|.+|+..++... -++|.+|.|+|||.+....+.+.+...+ +.++|+++||...+....+.+.+....
T Consensus 4 ~~~~~Q~~~i~~~~~~~---~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-- 78 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGK---NTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFER-- 78 (555)
T ss_dssp CCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT--
T ss_pred CCcHHHHHHHHHHhCCC---CEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhcc--
Confidence 57899999999998753 3799999999999998888888777655 789999999999999998888752110
Q ss_pred ccccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhhhcc-c-CCCCccEEEEEcCCCC
Q 002841 467 RENEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYAEG-V-DRGHFSHIFLDEAGQA 544 (874)
Q Consensus 467 ~~~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~~~~-~-~~~~fd~ViIDEAsQ~ 544 (874)
....+..+..... ...........++|+++|........... + ....+++||||||-..
T Consensus 79 ~~~~~~~~~g~~~-------------------~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~ 139 (555)
T 3tbk_A 79 LGYNIASISGATS-------------------DSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNT 139 (555)
T ss_dssp TTCCEEEECTTTG-------------------GGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGC
T ss_pred CCcEEEEEcCCCc-------------------chhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECcccc
Confidence 0112222221110 00000112245789999988765544332 2 3456899999999665
Q ss_pred Chh
Q 002841 545 SEP 547 (874)
Q Consensus 545 ~ep 547 (874)
...
T Consensus 140 ~~~ 142 (555)
T 3tbk_A 140 SKN 142 (555)
T ss_dssp STT
T ss_pred CCc
Confidence 544
No 52
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.28 E-value=3.6e-06 Score=87.60 Aligned_cols=124 Identities=19% Similarity=0.215 Sum_probs=79.3
Q ss_pred CCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhc---CCCeEEEecCCHHHHHHHHHHHhccccccc
Q 002841 390 NLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATR---EDARLLVCAPSNSAADHLLEKILGEKAVEV 466 (874)
Q Consensus 390 ~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~---~~~rILv~ApSNsAaD~l~~rL~~~~~~~~ 466 (874)
.+.+.|.+++..+... ..++|.||.|||||+.+...+....... +..++++.+|+...+..+.+++....+..+
T Consensus 61 p~~~~q~~~i~~i~~g---~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~ 137 (235)
T 3llm_A 61 PVKKFESEILEAISQN---SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEP 137 (235)
T ss_dssp GGGGGHHHHHHHHHHC---SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCT
T ss_pred ChHHHHHHHHHHHhcC---CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhcccc
Confidence 3577899999998875 3479999999999998776665543322 134899999999999999999875321111
Q ss_pred ccccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhhhcccCCCCccEEEEEcCCC
Q 002841 467 RENEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYAEGVDRGHFSHIFLDEAGQ 543 (874)
Q Consensus 467 ~~~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~~~~~~~~~fd~ViIDEAsQ 543 (874)
... ++ +....+ ....-...+|+++|........... ..++++||||||-.
T Consensus 138 ~~~----~g---------------~~~~~~------~~~~~~~~~Ivv~Tpg~l~~~l~~~--l~~~~~lVlDEah~ 187 (235)
T 3llm_A 138 GKS----CG---------------YSVRFE------SILPRPHASIMFCTVGVLLRKLEAG--IRGISHVIVDEIHE 187 (235)
T ss_dssp TSS----EE---------------EEETTE------EECCCSSSEEEEEEHHHHHHHHHHC--CTTCCEEEECCTTS
T ss_pred Cce----EE---------------Eeechh------hccCCCCCeEEEECHHHHHHHHHhh--hcCCcEEEEECCcc
Confidence 000 00 000000 0000135789999975543333332 35799999999943
No 53
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=98.26 E-value=2.6e-06 Score=103.31 Aligned_cols=126 Identities=19% Similarity=0.199 Sum_probs=84.0
Q ss_pred CCCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHhccccccccc
Q 002841 389 CNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILGEKAVEVRE 468 (874)
Q Consensus 389 ~~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~~~~~~~~~~ 468 (874)
..|++.|.+|+..++... ..++|.||.|||||+++...+.+.+.. .+.++++++|+...|.+..+++...... .
T Consensus 29 ~~l~~~Q~~~i~~~~~~~--~~~lv~apTGsGKT~~~~l~il~~~~~-~~~~il~i~P~r~La~q~~~~~~~~~~~---g 102 (715)
T 2va8_A 29 KKLNPPQTEAVKKGLLEG--NRLLLTSPTGSGKTLIAEMGIISFLLK-NGGKAIYVTPLRALTNEKYLTFKDWELI---G 102 (715)
T ss_dssp CBCCHHHHHHHHTTTTTT--CCEEEECCTTSCHHHHHHHHHHHHHHH-SCSEEEEECSCHHHHHHHHHHHGGGGGG---T
T ss_pred CCCCHHHHHHHHHHhcCC--CcEEEEcCCCCcHHHHHHHHHHHHHHH-CCCeEEEEeCcHHHHHHHHHHHHHhhcC---C
Confidence 368999999999844432 348999999999999987777665542 4679999999999999999998432111 1
Q ss_pred ccEEEe-cCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhhhcccC-CCCccEEEEEcCCC
Q 002841 469 NEIFRL-NAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYAEGVD-RGHFSHIFLDEAGQ 543 (874)
Q Consensus 469 ~~i~Rl-~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~~~~~~-~~~fd~ViIDEAsQ 543 (874)
..+..+ +...+ ....+..++|+++|......+...... ...+++||||||-.
T Consensus 103 ~~v~~~~G~~~~-----------------------~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~ 156 (715)
T 2va8_A 103 FKVAMTSGDYDT-----------------------DDAWLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHY 156 (715)
T ss_dssp CCEEECCSCSSS-----------------------CCGGGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGG
T ss_pred CEEEEEeCCCCC-----------------------chhhcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhh
Confidence 111111 11000 011235788999998665443333221 34789999999944
No 54
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=98.26 E-value=5.1e-06 Score=93.35 Aligned_cols=130 Identities=15% Similarity=0.086 Sum_probs=81.9
Q ss_pred CCCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcC-------------------CCeEEEecCCHH
Q 002841 389 CNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATRE-------------------DARLLVCAPSNS 449 (874)
Q Consensus 389 ~~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~-------------------~~rILv~ApSNs 449 (874)
..+++.|++|+..++..+ .++|.+|.|||||.+..-.+.+.+.... ..++|+++||..
T Consensus 36 ~~~~~~Q~~~i~~i~~~~---~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 112 (417)
T 2i4i_A 36 TRPTPVQKHAIPIIKEKR---DLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRE 112 (417)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHH
T ss_pred CCCCHHHHHHHHHHccCC---CEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHH
Confidence 468999999999988763 3799999999999876554544332221 147999999999
Q ss_pred HHHHHHHHHhcccccccccccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhhh-ccc
Q 002841 450 AADHLLEKILGEKAVEVRENEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYA-EGV 528 (874)
Q Consensus 450 AaD~l~~rL~~~~~~~~~~~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~~-~~~ 528 (874)
.+..+.+++.+.... ....+.-+..... ..... ......++|+++|......... ..+
T Consensus 113 L~~q~~~~~~~~~~~--~~~~~~~~~g~~~----~~~~~---------------~~~~~~~~I~v~Tp~~l~~~l~~~~~ 171 (417)
T 2i4i_A 113 LAVQIYEEARKFSYR--SRVRPCVVYGGAD----IGQQI---------------RDLERGCHLLVATPGRLVDMMERGKI 171 (417)
T ss_dssp HHHHHHHHHHHHHTT--SSCCEEEECSSSC----HHHHH---------------HHHTTCCSEEEECHHHHHHHHHTTSB
T ss_pred HHHHHHHHHHHHhCc--CCceEEEEECCCC----HHHHH---------------HHhhCCCCEEEEChHHHHHHHHcCCc
Confidence 999999988752110 0111111111100 00000 0111357899999876654332 223
Q ss_pred CCCCccEEEEEcCC
Q 002841 529 DRGHFSHIFLDEAG 542 (874)
Q Consensus 529 ~~~~fd~ViIDEAs 542 (874)
....+++||||||-
T Consensus 172 ~~~~~~~iViDEah 185 (417)
T 2i4i_A 172 GLDFCKYLVLDEAD 185 (417)
T ss_dssp CCTTCCEEEESSHH
T ss_pred ChhhCcEEEEEChh
Confidence 45578999999993
No 55
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=98.21 E-value=2.4e-06 Score=103.46 Aligned_cols=123 Identities=19% Similarity=0.119 Sum_probs=83.4
Q ss_pred CCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHhcccccccccc
Q 002841 390 NLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILGEKAVEVREN 469 (874)
Q Consensus 390 ~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~~~~~~~~~~~ 469 (874)
.|++.|.+++..++++ ..++|.||.|||||++....+.+.+. .+.++++++|+.+.|.+..+++...... ..
T Consensus 25 ~l~~~Q~~~i~~i~~~---~~~lv~apTGsGKT~~~~l~il~~~~--~~~~~l~i~P~r~La~q~~~~~~~~~~~---g~ 96 (702)
T 2p6r_A 25 ELFPPQAEAVEKVFSG---KNLLLAMPTAAGKTLLAEMAMVREAI--KGGKSLYVVPLRALAGEKYESFKKWEKI---GL 96 (702)
T ss_dssp CCCCCCHHHHHHHTTC---SCEEEECSSHHHHHHHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHHTTTTTT---TC
T ss_pred CCCHHHHHHHHHHhCC---CcEEEEcCCccHHHHHHHHHHHHHHH--hCCcEEEEeCcHHHHHHHHHHHHHHHhc---CC
Confidence 5788999999997764 34899999999999998777766654 3679999999999999999999431111 11
Q ss_pred cEEEe-cCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhhhcccC-CCCccEEEEEcCCC
Q 002841 470 EIFRL-NAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYAEGVD-RGHFSHIFLDEAGQ 543 (874)
Q Consensus 470 ~i~Rl-~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~~~~~~-~~~fd~ViIDEAsQ 543 (874)
.+..+ +...+ ....+..++|+++|......+...... ...+++||||||-.
T Consensus 97 ~v~~~~G~~~~-----------------------~~~~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~ 149 (702)
T 2p6r_A 97 RIGISTGDYES-----------------------RDEHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHL 149 (702)
T ss_dssp CEEEECSSCBC-----------------------CSSCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGG
T ss_pred EEEEEeCCCCc-----------------------chhhccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeee
Confidence 11111 11100 001234789999998665444333221 34789999999943
No 56
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=98.21 E-value=5.6e-06 Score=100.52 Aligned_cols=124 Identities=18% Similarity=0.154 Sum_probs=82.1
Q ss_pred CCCHHHHHHHHH-HhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHhccccccccc
Q 002841 390 NLNEEQMCSIEK-ILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILGEKAVEVRE 468 (874)
Q Consensus 390 ~LN~~Q~~AV~~-il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~~~~~~~~~~ 468 (874)
.|++.|.+|+.. +..+ ..++|.||.|||||++..-.+.+.+.. .+.++++++|+.++|.+..+++...... .
T Consensus 23 ~l~~~Q~~~i~~~~~~~---~~~lv~apTGsGKT~~~~l~il~~~~~-~~~~~l~i~P~raLa~q~~~~~~~l~~~---g 95 (720)
T 2zj8_A 23 SFYPPQAEALKSGILEG---KNALISIPTASGKTLIAEIAMVHRILT-QGGKAVYIVPLKALAEEKFQEFQDWEKI---G 95 (720)
T ss_dssp BCCHHHHHHHTTTGGGT---CEEEEECCGGGCHHHHHHHHHHHHHHH-HCSEEEEECSSGGGHHHHHHHTGGGGGG---T
T ss_pred CCCHHHHHHHHHHhcCC---CcEEEEcCCccHHHHHHHHHHHHHHHh-CCCEEEEEcCcHHHHHHHHHHHHHHHhc---C
Confidence 689999999998 4443 348999999999999876666554432 3579999999999999999999532111 1
Q ss_pred ccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhhhcccC-CCCccEEEEEcCC
Q 002841 469 NEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYAEGVD-RGHFSHIFLDEAG 542 (874)
Q Consensus 469 ~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~~~~~~-~~~fd~ViIDEAs 542 (874)
..+..+...... ....+..++|+++|......+...... ...+++||||||-
T Consensus 96 ~~v~~~~G~~~~----------------------~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H 148 (720)
T 2zj8_A 96 LRVAMATGDYDS----------------------KDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIH 148 (720)
T ss_dssp CCEEEECSCSSC----------------------CCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGG
T ss_pred CEEEEecCCCCc----------------------cccccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCc
Confidence 112111111000 011235789999998765443333221 3478999999994
No 57
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=98.16 E-value=5.1e-06 Score=94.69 Aligned_cols=131 Identities=17% Similarity=0.117 Sum_probs=82.9
Q ss_pred CCCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhc------CCCeEEEecCCHHHHHHHHHHHhccc
Q 002841 389 CNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATR------EDARLLVCAPSNSAADHLLEKILGEK 462 (874)
Q Consensus 389 ~~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~------~~~rILv~ApSNsAaD~l~~rL~~~~ 462 (874)
..+++.|++|+..+++.+ -+++.+|.|||||.+..-.+.+.+... .+.++|+++||...|..+.+.+.+..
T Consensus 77 ~~pt~iQ~~ai~~i~~g~---d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~ 153 (434)
T 2db3_A 77 KIPTPIQKCSIPVISSGR---DLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFA 153 (434)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhcCC---CEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHh
Confidence 357999999999999764 379999999999997665555444322 24589999999999999998887521
Q ss_pred ccccccccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhhhc-ccCCCCccEEEEEcC
Q 002841 463 AVEVRENEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYAE-GVDRGHFSHIFLDEA 541 (874)
Q Consensus 463 ~~~~~~~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~~~-~~~~~~fd~ViIDEA 541 (874)
... ...+.-+... ..... . .......++|+++|......+... .+...++++||||||
T Consensus 154 ~~~--~~~~~~~~gg------~~~~~--------~-----~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEa 212 (434)
T 2db3_A 154 FES--YLKIGIVYGG------TSFRH--------Q-----NECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEA 212 (434)
T ss_dssp TTS--SCCCCEECTT------SCHHH--------H-----HHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETH
T ss_pred ccC--CcEEEEEECC------CCHHH--------H-----HHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccH
Confidence 100 0000000000 00000 0 001124678999998766443322 234467899999999
Q ss_pred CC
Q 002841 542 GQ 543 (874)
Q Consensus 542 sQ 543 (874)
-.
T Consensus 213 h~ 214 (434)
T 2db3_A 213 DR 214 (434)
T ss_dssp HH
T ss_pred hh
Confidence 44
No 58
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=98.16 E-value=2.1e-06 Score=103.66 Aligned_cols=131 Identities=21% Similarity=0.163 Sum_probs=87.2
Q ss_pred CCCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCC----CeEEEecCCHHHHHHH-HHHHhcccc
Q 002841 389 CNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATRED----ARLLVCAPSNSAADHL-LEKILGEKA 463 (874)
Q Consensus 389 ~~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~----~rILv~ApSNsAaD~l-~~rL~~~~~ 463 (874)
..|.+.|.+|+..++... -++|.+|.|+|||.+....+.+++...+. .++||++|+...+... .+++.+...
T Consensus 6 ~~l~~~Q~~~i~~il~g~---~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~ 82 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGK---NIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 82 (699)
T ss_dssp -CCCHHHHHHHHHHHSSC---CEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHT
T ss_pred CCccHHHHHHHHHHHhCC---CEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcC
Confidence 368999999999999853 37999999999999988888877665433 7999999999999988 888876311
Q ss_pred cccccccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhh-------hcccCCCCccEE
Q 002841 464 VEVRENEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIY-------AEGVDRGHFSHI 536 (874)
Q Consensus 464 ~~~~~~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~-------~~~~~~~~fd~V 536 (874)
. ...+..+....... .........++|+++|........ ...+....+++|
T Consensus 83 ~---~~~v~~~~g~~~~~-------------------~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lv 140 (699)
T 4gl2_A 83 K---WYRVIGLSGDTQLK-------------------ISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLI 140 (699)
T ss_dssp T---TSCEEEEC----CC-------------------CCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEE
T ss_pred c---CceEEEEeCCcchh-------------------hHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEE
Confidence 1 01222222211100 000112256889999987665432 122344579999
Q ss_pred EEEcCCCC
Q 002841 537 FLDEAGQA 544 (874)
Q Consensus 537 iIDEAsQ~ 544 (874)
|||||-..
T Consensus 141 ViDEaH~~ 148 (699)
T 4gl2_A 141 IIDECHHT 148 (699)
T ss_dssp EEESGGGC
T ss_pred EEECcccc
Confidence 99999543
No 59
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=98.15 E-value=9.7e-06 Score=93.84 Aligned_cols=152 Identities=19% Similarity=0.185 Sum_probs=98.7
Q ss_pred CCCCCCHHHHHHHHHHhc--cCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHhccccc
Q 002841 387 ISCNLNEEQMCSIEKILG--LKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILGEKAV 464 (874)
Q Consensus 387 ~~~~LN~~Q~~AV~~il~--~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~~~~~~ 464 (874)
+...|.+.|+++|..+.. ..+ .-.++..+.|+|||.+++..+..+....+..++||++|+ +.+.+..+.+.+.
T Consensus 34 ~~~~L~~~Q~~~v~~l~~~~~~~-~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~-~l~~qw~~e~~~~--- 108 (500)
T 1z63_A 34 IKANLRPYQIKGFSWMRFMNKLG-FGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPL-SVLKNWEEELSKF--- 108 (500)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHTT-CCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECS-TTHHHHHHHHHHH---
T ss_pred hhccchHHHHHHHHHHHHHhhCC-CCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccH-HHHHHHHHHHHHH---
Confidence 446799999999987642 111 226888899999999998888887766667899999995 4667777777652
Q ss_pred ccccccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhhhcccCCCCccEEEEEcCCCC
Q 002841 465 EVRENEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYAEGVDRGHFSHIFLDEAGQA 544 (874)
Q Consensus 465 ~~~~~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~~~~~~~~~fd~ViIDEAsQ~ 544 (874)
.+...+..+..... ...+..++|+++|......... +....|++||||||...
T Consensus 109 -~~~~~v~~~~g~~~------------------------~~~~~~~~ivi~t~~~l~~~~~--l~~~~~~~vIvDEaH~~ 161 (500)
T 1z63_A 109 -APHLRFAVFHEDRS------------------------KIKLEDYDIILTTYAVLLRDTR--LKEVEWKYIVIDEAQNI 161 (500)
T ss_dssp -CTTSCEEECSSSTT------------------------SCCGGGSSEEEEEHHHHTTCHH--HHTCCEEEEEEETGGGG
T ss_pred -CCCceEEEEecCch------------------------hccccCCcEEEeeHHHHhccch--hcCCCcCEEEEeCcccc
Confidence 11112222111100 0123567899999876654322 33457999999999766
Q ss_pred Chhh--hHHHhhccccCCcEEEEecCCCc
Q 002841 545 SEPE--SMVPISSYCKKDTVVVLAGDPMQ 571 (874)
Q Consensus 545 ~epe--~li~L~~l~~~~~~vVLvGDp~Q 571 (874)
..+. ....+..+. ...++.|-|=|.|
T Consensus 162 kn~~~~~~~~l~~l~-~~~~l~LTaTP~~ 189 (500)
T 1z63_A 162 KNPQTKIFKAVKELK-SKYRIALTGTPIE 189 (500)
T ss_dssp SCTTSHHHHHHHTSC-EEEEEEECSSCST
T ss_pred CCHhHHHHHHHHhhc-cCcEEEEecCCCC
Confidence 5443 233343332 2347899998877
No 60
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=98.14 E-value=6.8e-06 Score=100.97 Aligned_cols=135 Identities=13% Similarity=0.128 Sum_probs=90.8
Q ss_pred CCCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcC---CCeEEEecCCHHHHHHHHHHHhcccccc
Q 002841 389 CNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATRE---DARLLVCAPSNSAADHLLEKILGEKAVE 465 (874)
Q Consensus 389 ~~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~---~~rILv~ApSNsAaD~l~~rL~~~~~~~ 465 (874)
..|.+.|.+|+..++... -++|.+|.|||||.+....+.+.+...+ +.++||++|+...+....+++.+....
T Consensus 247 ~~l~~~Q~~~i~~~l~~~---~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~- 322 (797)
T 4a2q_A 247 KKARSYQIELAQPAINGK---NALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER- 322 (797)
T ss_dssp -CCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG-
T ss_pred CCCCHHHHHHHHHHHhCC---CEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhccc-
Confidence 468999999999998763 3799999999999998888888877654 789999999999999998888762110
Q ss_pred cccccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhhhcc-c-CCCCccEEEEEcCCC
Q 002841 466 VRENEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYAEG-V-DRGHFSHIFLDEAGQ 543 (874)
Q Consensus 466 ~~~~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~~~~-~-~~~~fd~ViIDEAsQ 543 (874)
....+..+...... ..........++|+++|........... + ....+++||||||-.
T Consensus 323 -~~~~v~~~~g~~~~-------------------~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~ 382 (797)
T 4a2q_A 323 -QGYSVQGISGENFS-------------------NVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHN 382 (797)
T ss_dssp -GTCCEEEECCC------------------------CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGG
T ss_pred -CCceEEEEeCCcch-------------------hhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccc
Confidence 01122222221100 0000122346789999987765433322 2 334689999999965
Q ss_pred CChh
Q 002841 544 ASEP 547 (874)
Q Consensus 544 ~~ep 547 (874)
....
T Consensus 383 ~~~~ 386 (797)
T 4a2q_A 383 TTGN 386 (797)
T ss_dssp CSTT
T ss_pred cCCC
Confidence 5543
No 61
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=98.13 E-value=1e-05 Score=102.23 Aligned_cols=121 Identities=16% Similarity=0.126 Sum_probs=84.6
Q ss_pred CCCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHhccccccccc
Q 002841 389 CNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILGEKAVEVRE 468 (874)
Q Consensus 389 ~~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~~~~~~~~~~ 468 (874)
..|++.|++|+..++... -++|.||.|||||.+....|.+.+. .+.++|+++|+...+....+++.+..+ .
T Consensus 183 f~ltp~Q~~AI~~i~~g~---dvLV~ApTGSGKTlva~l~i~~~l~--~g~rvlvl~PtraLa~Q~~~~l~~~~~----~ 253 (1108)
T 3l9o_A 183 FTLDPFQDTAISCIDRGE---SVLVSAHTSAGKTVVAEYAIAQSLK--NKQRVIYTSPIKALSNQKYRELLAEFG----D 253 (1108)
T ss_dssp SCCCHHHHHHHHHHTTTC---CEEEECCSSSHHHHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHHHHHHHTS----S
T ss_pred CCCCHHHHHHHHHHHcCC---CEEEECCCCCChHHHHHHHHHHHHh--cCCeEEEEcCcHHHHHHHHHHHHHHhC----C
Confidence 468999999999987753 3799999999999998888877765 568999999999999999999986311 1
Q ss_pred ccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhhhcc-cCCCCccEEEEEcCCCCCh
Q 002841 469 NEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYAEG-VDRGHFSHIFLDEAGQASE 546 (874)
Q Consensus 469 ~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~~~~-~~~~~fd~ViIDEAsQ~~e 546 (874)
+--+.... ..-.+++|+++|..........+ .....+++||||||-....
T Consensus 254 --VglltGd~--------------------------~~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d 304 (1108)
T 3l9o_A 254 --VGLMTGDI--------------------------TINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRD 304 (1108)
T ss_dssp --EEEECSSC--------------------------BCCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTS
T ss_pred --ccEEeCcc--------------------------ccCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccc
Confidence 11111000 00134789999976543322221 1123689999999955544
No 62
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=98.13 E-value=1.1e-05 Score=97.25 Aligned_cols=134 Identities=14% Similarity=0.090 Sum_probs=88.5
Q ss_pred CCCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCC---CeEEEecCCHHHHHHHHHHHhcccccc
Q 002841 389 CNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATRED---ARLLVCAPSNSAADHLLEKILGEKAVE 465 (874)
Q Consensus 389 ~~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~---~rILv~ApSNsAaD~l~~rL~~~~~~~ 465 (874)
..|.+.|.+++..++... -++|.+|.|+|||.+....+.+.+...+. .++|+++||...+.+..+.+.+....
T Consensus 12 ~~lr~~Q~~~i~~~l~g~---~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~- 87 (696)
T 2ykg_A 12 FKPRNYQLELALPAMKGK---NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFER- 87 (696)
T ss_dssp -CCCHHHHHHHHHHHTTC---CEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTT-
T ss_pred CCccHHHHHHHHHHHcCC---CEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhcc-
Confidence 468999999999998753 37999999999999888877776664432 78999999999999988888752110
Q ss_pred cccccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhhhcc-c-CCCCccEEEEEcCCC
Q 002841 466 VRENEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYAEG-V-DRGHFSHIFLDEAGQ 543 (874)
Q Consensus 466 ~~~~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~~~~-~-~~~~fd~ViIDEAsQ 543 (874)
....+..+...... . .........++|+++|..........+ + ....+++||||||-.
T Consensus 88 -~~~~v~~~~g~~~~-~------------------~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~ 147 (696)
T 2ykg_A 88 -HGYRVTGISGATAE-N------------------VPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHN 147 (696)
T ss_dssp -TTCCEEEECSSSCS-S------------------SCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGG
T ss_pred -CCceEEEEeCCccc-c------------------ccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCc
Confidence 01112222211100 0 000112246789999987765443332 2 345789999999955
Q ss_pred CCh
Q 002841 544 ASE 546 (874)
Q Consensus 544 ~~e 546 (874)
...
T Consensus 148 ~~~ 150 (696)
T 2ykg_A 148 TSK 150 (696)
T ss_dssp CST
T ss_pred ccC
Confidence 543
No 63
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=98.10 E-value=1.4e-05 Score=99.98 Aligned_cols=123 Identities=11% Similarity=0.022 Sum_probs=84.5
Q ss_pred CCCCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHhcccccccc
Q 002841 388 SCNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILGEKAVEVR 467 (874)
Q Consensus 388 ~~~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~~~~~~~~~ 467 (874)
...|++.|.+||..++... .++|.||.|||||.+....+..++. ++.++|+++|+.+.+....+++.+.. .
T Consensus 37 ~f~l~~~Q~~aI~~il~g~---~vlv~apTGsGKTlv~~~~i~~~~~--~g~~vlvl~PtraLa~Q~~~~l~~~~----~ 107 (997)
T 4a4z_A 37 PFELDTFQKEAVYHLEQGD---SVFVAAHTSAGKTVVAEYAIAMAHR--NMTKTIYTSPIKALSNQKFRDFKETF----D 107 (997)
T ss_dssp SSCCCHHHHHHHHHHHTTC---EEEEECCTTSCSHHHHHHHHHHHHH--TTCEEEEEESCGGGHHHHHHHHHTTC-----
T ss_pred CCCCCHHHHHHHHHHHcCC---CEEEEECCCCcHHHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHHc----C
Confidence 3468999999999998763 3799999999999987777766654 56799999999999999999998621 1
Q ss_pred cccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhhh-cccCCCCccEEEEEcCCCCC
Q 002841 468 ENEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYA-EGVDRGHFSHIFLDEAGQAS 545 (874)
Q Consensus 468 ~~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~~-~~~~~~~fd~ViIDEAsQ~~ 545 (874)
...+.-+.... ..-.+++|+++|......... .......+++||||||-...
T Consensus 108 ~~~v~~l~G~~--------------------------~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~ 160 (997)
T 4a4z_A 108 DVNIGLITGDV--------------------------QINPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVN 160 (997)
T ss_dssp -CCEEEECSSC--------------------------EECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCC
T ss_pred CCeEEEEeCCC--------------------------ccCCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECccccc
Confidence 11121111110 001346888998765433222 22223478999999995543
No 64
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=98.06 E-value=1.7e-05 Score=96.51 Aligned_cols=130 Identities=18% Similarity=0.156 Sum_probs=84.3
Q ss_pred CCCHHHHHHHHHHhcc--C-CCCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHhccccccc
Q 002841 390 NLNEEQMCSIEKILGL--K-GAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILGEKAVEV 466 (874)
Q Consensus 390 ~LN~~Q~~AV~~il~~--~-~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~~~~~~~~ 466 (874)
.|++.|++|+..++.. . .....+|+||.|||||.+....+.+.+. .+.++++++||...|....+++.+....
T Consensus 368 ~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~--~g~qvlvlaPtr~La~Q~~~~l~~~~~~-- 443 (780)
T 1gm5_A 368 KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYE--AGFQTAFMVPTSILAIQHYRRTVESFSK-- 443 (780)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHH--HTSCEEEECSCHHHHHHHHHHHHHHHTC--
T ss_pred CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCcHHHHHHHHHHHHHHhhh--
Confidence 7999999999999863 1 1124699999999999998888877765 3579999999999999999988762110
Q ss_pred ccccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhc--ccceEEEEechhhhhhhhcccCCCCccEEEEEcCCCC
Q 002841 467 RENEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAAL--VCYRIIISTYMSASLIYAEGVDRGHFSHIFLDEAGQA 544 (874)
Q Consensus 467 ~~~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L--~~~~VI~~T~~sa~~l~~~~~~~~~fd~ViIDEAsQ~ 544 (874)
....+.-+.... ...-.. . ..+.+ ..++|+++|.... ...+....+++|||||| +.
T Consensus 444 ~gi~v~~l~G~~------~~~~r~------~-----~~~~l~~g~~~IvVgT~~ll----~~~~~~~~l~lVVIDEa-Hr 501 (780)
T 1gm5_A 444 FNIHVALLIGAT------TPSEKE------K-----IKSGLRNGQIDVVIGTHALI----QEDVHFKNLGLVIIDEQ-HR 501 (780)
T ss_dssp SSCCEEECCSSS------CHHHHH------H-----HHHHHHSSCCCEEEECTTHH----HHCCCCSCCCEEEEESC-CC
T ss_pred cCceEEEEeCCC------CHHHHH------H-----HHHHHhcCCCCEEEECHHHH----hhhhhccCCceEEeccc-ch
Confidence 011121111110 000000 0 00111 2478999997432 23445568899999999 44
Q ss_pred C
Q 002841 545 S 545 (874)
Q Consensus 545 ~ 545 (874)
.
T Consensus 502 ~ 502 (780)
T 1gm5_A 502 F 502 (780)
T ss_dssp C
T ss_pred h
Confidence 3
No 65
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=98.06 E-value=8.6e-06 Score=96.30 Aligned_cols=136 Identities=18% Similarity=0.174 Sum_probs=82.9
Q ss_pred CCCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcC-----CCeEEEecCCHHHHHHHHHHHhcccc
Q 002841 389 CNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATRE-----DARLLVCAPSNSAADHLLEKILGEKA 463 (874)
Q Consensus 389 ~~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~-----~~rILv~ApSNsAaD~l~~rL~~~~~ 463 (874)
..+++.|.+|+..++...+ .-+++.+|.|||||.+..-.+.+.+.... +.++|+++||...|..+.+++.+...
T Consensus 42 ~~~~~~Q~~~i~~il~~~~-~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~ 120 (579)
T 3sqw_A 42 PGLTPVQQKTIKPILSSED-HDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHD 120 (579)
T ss_dssp SSCCHHHHHHHHHHHCSSS-EEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHccCC-CeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHh
Confidence 3589999999999994321 24799999999999986666666554332 34899999999999999998876311
Q ss_pred c--ccccccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhhhc--ccCCCCccEEEEE
Q 002841 464 V--EVRENEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYAE--GVDRGHFSHIFLD 539 (874)
Q Consensus 464 ~--~~~~~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~~~--~~~~~~fd~ViID 539 (874)
. .+....+..+.... ......... .-..++|+++|.......... ......+++||||
T Consensus 121 ~~~~~~~~~~~~~~gg~----~~~~~~~~l--------------~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViD 182 (579)
T 3sqw_A 121 MNYGLKKYACVSLVGGT----DFRAAMNKM--------------NKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLD 182 (579)
T ss_dssp HCGGGTTSCEEEECTTS----CHHHHHHHH--------------HHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred hcccccceEEEEEECCc----cHHHHHHHH--------------hcCCCCEEEECHHHHHHHHHhccccccccCCEEEEE
Confidence 0 11111111111110 000000000 012578999998765432221 1223478999999
Q ss_pred cCCC
Q 002841 540 EAGQ 543 (874)
Q Consensus 540 EAsQ 543 (874)
||-.
T Consensus 183 Eah~ 186 (579)
T 3sqw_A 183 EADR 186 (579)
T ss_dssp THHH
T ss_pred ChHH
Confidence 9943
No 66
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=98.06 E-value=6e-06 Score=81.52 Aligned_cols=128 Identities=10% Similarity=0.106 Sum_probs=92.4
Q ss_pred CHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHhcccccccccccE
Q 002841 392 NEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILGEKAVEVRENEI 471 (874)
Q Consensus 392 N~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~~~~~~~~~~~~i 471 (874)
+..|..|+..++.... +..+|+|+.||+||.+.++.+..+... .+.+|.++||+.++...+.+.+.-.. ..+
T Consensus 36 ~~~~~~a~~~l~~s~~-~~~iv~g~ggs~~~~~~~a~L~~~a~~-~Gr~V~vLAp~~~s~~~l~~~~~l~~------~t~ 107 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRP-SLAIVSGQGGAAGQRERVAELVMMARE-QGREVQIIAADRRSQMNMKQDERLSG------ELI 107 (189)
T ss_dssp HHHHHHHHHHHHHHSC-CEECCBCSSCSHHHHHHHHHHHHHHHH-TTCCEEEECSTTHHHHHHSCTTTCSS------CSS
T ss_pred CccchhHHHHHhccCC-ceEEEecccchHHHHHHHHHHHHHHHh-cCeEEEEEcCchHHHHHHHhhcCcCc------cee
Confidence 4779999999986543 567999999999999977777666654 68999999999999999887764210 001
Q ss_pred EEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhhhcccCCCCccEEEEEcCCCCChhhhHH
Q 002841 472 FRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYAEGVDRGHFSHIFLDEAGQASEPESMV 551 (874)
Q Consensus 472 ~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~~~~~~~~~fd~ViIDEAsQ~~epe~li 551 (874)
.+ +. +...+.+...=+++|||||++.+--+++.
T Consensus 108 ------t~-----------~~------------------------------ll~~~~~~tp~s~lIVD~AekLS~kE~~~ 140 (189)
T 2l8b_A 108 ------TG-----------RR------------------------------QLLEGMAFTPGSTVIVDQGEKLSLKETLT 140 (189)
T ss_dssp ------ST-----------TT------------------------------TTTTSCCCCCCCEEEEEESSSHHHHHHHH
T ss_pred ------eh-----------hh------------------------------hhcCCCCCCCCCEEEEechhhcCHHHHHH
Confidence 00 00 00011100123589999999999999888
Q ss_pred HhhccccCCcEEEEecCCCcccc
Q 002841 552 PISSYCKKDTVVVLAGDPMQLGP 574 (874)
Q Consensus 552 ~L~~l~~~~~~vVLvGDp~QL~P 574 (874)
.+......+.++||+||..|++-
T Consensus 141 Lld~A~~~naqvvll~~~~RqG~ 163 (189)
T 2l8b_A 141 LLDGAARHNVQVLITDSGQRTGT 163 (189)
T ss_dssp HHHHHHHTTCCEEEEESSTTTCS
T ss_pred HHHHHHhcCCEEEEeCCcccccC
Confidence 88766666789999999998554
No 67
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=98.03 E-value=1.2e-05 Score=94.45 Aligned_cols=136 Identities=18% Similarity=0.174 Sum_probs=83.3
Q ss_pred CCCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcC-----CCeEEEecCCHHHHHHHHHHHhcccc
Q 002841 389 CNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATRE-----DARLLVCAPSNSAADHLLEKILGEKA 463 (874)
Q Consensus 389 ~~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~-----~~rILv~ApSNsAaD~l~~rL~~~~~ 463 (874)
..+++.|.+|+..++...+ .-+++.+|.|||||.+..-.+.+.+...+ +.++|+++||...|..+.+++.....
T Consensus 93 ~~~~~~Q~~~i~~~l~~~~-~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~ 171 (563)
T 3i5x_A 93 PGLTPVQQKTIKPILSSED-HDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHD 171 (563)
T ss_dssp SSCCHHHHHHHHHHHSSSS-EEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCC-CeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHh
Confidence 3589999999999994321 24799999999999987666666554332 34899999999999999998876211
Q ss_pred c--ccccccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhhhc--ccCCCCccEEEEE
Q 002841 464 V--EVRENEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYAE--GVDRGHFSHIFLD 539 (874)
Q Consensus 464 ~--~~~~~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~~~--~~~~~~fd~ViID 539 (874)
. .+....+..+.... ......... .-..++|+++|.......... ......+++||||
T Consensus 172 ~~~~~~~~~~~~~~g~~----~~~~~~~~~--------------~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViD 233 (563)
T 3i5x_A 172 MNYGLKKYACVSLVGGT----DFRAAMNKM--------------NKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLD 233 (563)
T ss_dssp HCGGGTTSCEEEECTTS----CHHHHHHHH--------------HHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred hccccCceeEEEEECCc----CHHHHHHHH--------------hcCCCCEEEECcHHHHHHHHhccccccccceEEEEe
Confidence 0 11111122111110 000000000 013578999998765432221 1123468999999
Q ss_pred cCCC
Q 002841 540 EAGQ 543 (874)
Q Consensus 540 EAsQ 543 (874)
||-.
T Consensus 234 Eah~ 237 (563)
T 3i5x_A 234 EADR 237 (563)
T ss_dssp THHH
T ss_pred CHHH
Confidence 9943
No 68
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=98.03 E-value=2.2e-05 Score=98.40 Aligned_cols=119 Identities=16% Similarity=0.136 Sum_probs=82.7
Q ss_pred CCCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHhccccccccc
Q 002841 389 CNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILGEKAVEVRE 468 (874)
Q Consensus 389 ~~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~~~~~~~~~~ 468 (874)
..|++.|++|+..++... -++|.+|.|+|||.+...++.+.+. .+.++|+++|+.+.+....+++.+.. .
T Consensus 85 f~L~~~Q~eai~~l~~g~---~vLV~apTGSGKTlva~lai~~~l~--~g~rvL~l~PtkaLa~Q~~~~l~~~~----~- 154 (1010)
T 2xgj_A 85 FTLDPFQDTAISCIDRGE---SVLVSAHTSAGKTVVAEYAIAQSLK--NKQRVIYTSPIKALSNQKYRELLAEF----G- 154 (1010)
T ss_dssp SCCCHHHHHHHHHHHHTC---EEEEECCTTSCHHHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHHHHHHHH----S-
T ss_pred CCCCHHHHHHHHHHHcCC---CEEEECCCCCChHHHHHHHHHHHhc--cCCeEEEECChHHHHHHHHHHHHHHh----C-
Confidence 469999999999988753 3799999999999988777776664 46899999999999999999987621 1
Q ss_pred ccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhh-hhcccCCCCccEEEEEcCCCC
Q 002841 469 NEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLI-YAEGVDRGHFSHIFLDEAGQA 544 (874)
Q Consensus 469 ~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l-~~~~~~~~~fd~ViIDEAsQ~ 544 (874)
.+.-+... .. .-.+++|+++|....... .........+++||||||-..
T Consensus 155 -~vglltGd------~~--------------------~~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l 204 (1010)
T 2xgj_A 155 -DVGLMTGD------IT--------------------INPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYM 204 (1010)
T ss_dssp -CEEEECSS------CE--------------------ECTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGG
T ss_pred -CEEEEeCC------Cc--------------------cCCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhh
Confidence 11111100 00 002467899997654332 222233347899999999443
No 69
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=98.03 E-value=1.6e-05 Score=94.10 Aligned_cols=162 Identities=18% Similarity=0.207 Sum_probs=105.8
Q ss_pred cCCCCCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHhcccccc
Q 002841 386 PISCNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILGEKAVE 465 (874)
Q Consensus 386 ~~~~~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~~~~~~~ 465 (874)
+....++.+|.+|+..++.... +..+|.|+.|+|||+.+-.++.++. .+++|||||..|+..+.+-..+.
T Consensus 171 ~~~~~~T~dQ~~al~~~~~~~~-~~~vlta~RGRGKSa~lG~~~a~~~-----~~~~vtAP~~~a~~~l~~~~~~~---- 240 (671)
T 2zpa_A 171 PATGAPQPEQQQLLKQLMTMPP-GVAAVTAARGRGKSALAGQLISRIA-----GRAIVTAPAKASTDVLAQFAGEK---- 240 (671)
T ss_dssp CCCSSCCHHHHHHHHHHTTCCS-EEEEEEECTTSSHHHHHHHHHHHSS-----SCEEEECSSCCSCHHHHHHHGGG----
T ss_pred CCCCCCCHHHHHHHHHHHHhhh-CeEEEecCCCCCHHHHHHHHHHHHH-----hCcEEECCCHHHHHHHHHHhhCC----
Confidence 3345789999999999887432 4589999999999987776666553 35799999999999887765320
Q ss_pred cccccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhhhcccCCCCccEEEEEcCCCCC
Q 002841 466 VRENEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYAEGVDRGHFSHIFLDEAGQAS 545 (874)
Q Consensus 466 ~~~~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~~~~~~~~~fd~ViIDEAsQ~~ 545 (874)
.+|..-++ +. . .....|+||||||+.+.
T Consensus 241 -----------------------i~~~~Pd~--------------------------~~-~--~~~~~dlliVDEAAaIp 268 (671)
T 2zpa_A 241 -----------------------FRFIAPDA--------------------------LL-A--SDEQADWLVVDEAAAIP 268 (671)
T ss_dssp -----------------------CCBCCHHH--------------------------HH-H--SCCCCSEEEEETGGGSC
T ss_pred -----------------------eEEeCchh--------------------------hh-h--CcccCCEEEEEchhcCC
Confidence 11110000 00 0 11258999999999999
Q ss_pred hhhhHHHhhccccCCcEEEEecCCCcccceeecchhhhcCCCccHHHHHHhcCCCCCCCccceeecccccCC--chhhhc
Q 002841 546 EPESMVPISSYCKKDTVVVLAGDPMQLGPVIYSREAETYGMGKSYLERLFECEPYCHGNENYVTKLVRNYRS--HPQILH 623 (874)
Q Consensus 546 epe~li~L~~l~~~~~~vVLvGDp~QL~PvI~s~~a~~~gl~~SlfeRL~~~~~~~~~~~~~~~~L~~nYRs--hp~I~~ 623 (874)
.|.....+. +..+++++...++.. |.+..+.-++....+ +...+.|++-.|= +..|-.
T Consensus 269 ~pll~~ll~----~~~~v~~~tTv~GYE-----------GtGrgf~lk~~~~L~-----~~~~~~L~~piR~a~~DplE~ 328 (671)
T 2zpa_A 269 APLLHQLVS----RFPRTLLTTTVQGYE-----------GTGRGFLLKFCARFP-----HLHRFELQQPIRWAQGCPLEK 328 (671)
T ss_dssp HHHHHHHHT----TSSEEEEEEEBSSTT-----------BBCHHHHHHHHHTST-----TCEEEECCSCSSSCTTCHHHH
T ss_pred HHHHHHHHh----hCCeEEEEecCCcCC-----------CcCcccccccHhhcC-----CCcEEEccCceecCCCCCHHH
Confidence 885444443 445799999888843 334444334433221 2235678877776 557777
Q ss_pred cccccc
Q 002841 624 LPSKLF 629 (874)
Q Consensus 624 ~~n~~f 629 (874)
+.++++
T Consensus 329 wl~~~l 334 (671)
T 2zpa_A 329 MVSEAL 334 (671)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 776655
No 70
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=98.02 E-value=1.5e-05 Score=100.76 Aligned_cols=126 Identities=19% Similarity=0.257 Sum_probs=84.3
Q ss_pred CCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHhcccccccccc
Q 002841 390 NLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILGEKAVEVREN 469 (874)
Q Consensus 390 ~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~~~~~~~~~~~ 469 (874)
.+++.|.+|+..++..+ -+++.+|.|||||......+.+.+ ..+.++|+++||...|.++.+++.+.. ....
T Consensus 78 ~pt~iQ~~ai~~il~g~---dvlv~ApTGSGKTl~~l~~il~~~--~~~~~~Lil~PtreLa~Q~~~~l~~l~---~~~i 149 (1104)
T 4ddu_A 78 DLTGYQRLWAKRIVQGK---SFTMVAPTGVGKTTFGMMTALWLA--RKGKKSALVFPTVTLVKQTLERLQKLA---DEKV 149 (1104)
T ss_dssp CCCHHHHHHHHHHTTTC---CEEECCSTTCCHHHHHHHHHHHHH--TTTCCEEEEESSHHHHHHHHHHHHTTS---CTTS
T ss_pred CCCHHHHHHHHHHHcCC---CEEEEeCCCCcHHHHHHHHHHHHH--hcCCeEEEEechHHHHHHHHHHHHHhh---CCCC
Confidence 58999999999999864 379999999999997666666655 356799999999999999999998732 1111
Q ss_pred cEEEecCCCCCCcCCchhhhhhccccchhccCCchhhc--ccceEEEEechhhhhhhhcccCCCCccEEEEEcC
Q 002841 470 EIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAAL--VCYRIIISTYMSASLIYAEGVDRGHFSHIFLDEA 541 (874)
Q Consensus 470 ~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L--~~~~VI~~T~~sa~~l~~~~~~~~~fd~ViIDEA 541 (874)
.+.-+...... ...... ...+ ..++|+++|......+... +...++++||||||
T Consensus 150 ~v~~l~Gg~~~-~er~~~----------------~~~l~~g~~~IlV~Tp~rL~~~l~~-l~~~~l~~lViDEa 205 (1104)
T 4ddu_A 150 KIFGFYSSMKK-EEKEKF----------------EKSFEEDDYHILVFSTQFVSKNREK-LSQKRFDFVFVDDV 205 (1104)
T ss_dssp CEEEECTTCCT-THHHHH----------------HHHHHTSCCSEEEEEHHHHHHSHHH-HHTSCCSEEEESCH
T ss_pred eEEEEeCCCCH-HHHHHH----------------HHHHhCCCCCEEEECHHHHHHHHHh-hcccCcCEEEEeCC
Confidence 22222211110 000000 0111 2378999998766433222 34458999999999
No 71
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=98.02 E-value=7.4e-06 Score=102.27 Aligned_cols=135 Identities=13% Similarity=0.128 Sum_probs=89.3
Q ss_pred CCCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcC---CCeEEEecCCHHHHHHHHHHHhcccccc
Q 002841 389 CNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATRE---DARLLVCAPSNSAADHLLEKILGEKAVE 465 (874)
Q Consensus 389 ~~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~---~~rILv~ApSNsAaD~l~~rL~~~~~~~ 465 (874)
..|.+.|.+|+..++... -.+|.+|.|+|||.+....+.+.+...+ +.++||++|+...+.+..+.+.+....
T Consensus 247 ~~~r~~Q~~ai~~il~g~---~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~- 322 (936)
T 4a2w_A 247 KKARSYQIELAQPAINGK---NALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER- 322 (936)
T ss_dssp -CCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT-
T ss_pred CCCCHHHHHHHHHHHcCC---CEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcc-
Confidence 468999999999998763 3799999999999998877777666544 679999999999999998888752110
Q ss_pred cccccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhhhcc-c-CCCCccEEEEEcCCC
Q 002841 466 VRENEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYAEG-V-DRGHFSHIFLDEAGQ 543 (874)
Q Consensus 466 ~~~~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~~~~-~-~~~~fd~ViIDEAsQ 543 (874)
....+..+...... ..........++|+++|........... + ....+++||||||-.
T Consensus 323 -~~~~v~~~~G~~~~-------------------~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~ 382 (936)
T 4a2w_A 323 -QGYSVQGISGENFS-------------------NVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHN 382 (936)
T ss_dssp -TTCCEEEECCC------------------------CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGG
T ss_pred -cCceEEEEECCcch-------------------hhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccc
Confidence 01222222221100 0001122346789999987765443322 2 234689999999965
Q ss_pred CChh
Q 002841 544 ASEP 547 (874)
Q Consensus 544 ~~ep 547 (874)
....
T Consensus 383 ~~~~ 386 (936)
T 4a2w_A 383 TTGN 386 (936)
T ss_dssp CSTT
T ss_pred cCCC
Confidence 5443
No 72
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=98.01 E-value=2.6e-05 Score=99.15 Aligned_cols=143 Identities=17% Similarity=0.134 Sum_probs=87.9
Q ss_pred CCCCCHHHHHHHHHHhcc---CCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHhccccc
Q 002841 388 SCNLNEEQMCSIEKILGL---KGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILGEKAV 464 (874)
Q Consensus 388 ~~~LN~~Q~~AV~~il~~---~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~~~~~~ 464 (874)
...+++.|.+|+..++.. ....-.+|.||.|+|||.+...++..++. .+.++|+++||...|....+++.+....
T Consensus 601 ~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~--~g~~vlvlvPt~~La~Q~~~~~~~~~~~ 678 (1151)
T 2eyq_A 601 PFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD--NHKQVAVLVPTTLLAQQHYDNFRDRFAN 678 (1151)
T ss_dssp CSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT--TTCEEEEECSSHHHHHHHHHHHHHHSTT
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH--hCCeEEEEechHHHHHHHHHHHHHHhhc
Confidence 345799999999999862 11114799999999999987766655554 4679999999999999999888752110
Q ss_pred ccccccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhc--ccceEEEEechhhhhhhhcccCCCCccEEEEEcCC
Q 002841 465 EVRENEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAAL--VCYRIIISTYMSASLIYAEGVDRGHFSHIFLDEAG 542 (874)
Q Consensus 465 ~~~~~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L--~~~~VI~~T~~sa~~l~~~~~~~~~fd~ViIDEAs 542 (874)
....+.-+.... . ..+... ..+.+ ..++|+++|.... ...+....+++||||||
T Consensus 679 --~~i~v~~l~~~~-~----~~~~~~------------~~~~l~~g~~dIvV~T~~ll----~~~~~~~~l~lvIiDEa- 734 (1151)
T 2eyq_A 679 --WPVRIEMISRFR-S----AKEQTQ------------ILAEVAEGKIDILIGTHKLL----QSDVKFKDLGLLIVDEE- 734 (1151)
T ss_dssp --TTCCEEEESTTS-C----HHHHHH------------HHHHHHTTCCSEEEECTHHH----HSCCCCSSEEEEEEESG-
T ss_pred --CCCeEEEEeCCC-C----HHHHHH------------HHHHHhcCCCCEEEECHHHH----hCCccccccceEEEech-
Confidence 011111111100 0 000000 00111 2578999996432 23445568999999999
Q ss_pred CCChhhhHHHhhcc
Q 002841 543 QASEPESMVPISSY 556 (874)
Q Consensus 543 Q~~epe~li~L~~l 556 (874)
|.........+..+
T Consensus 735 H~~g~~~~~~l~~l 748 (1151)
T 2eyq_A 735 HRFGVRHKERIKAM 748 (1151)
T ss_dssp GGSCHHHHHHHHHH
T ss_pred HhcChHHHHHHHHh
Confidence 55544444444433
No 73
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=98.00 E-value=4.1e-06 Score=86.63 Aligned_cols=37 Identities=32% Similarity=0.382 Sum_probs=30.4
Q ss_pred CCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCC
Q 002841 409 PPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPS 447 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApS 447 (874)
..++|.||||+||||.+..++..+.. .+.++++..|.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~--~g~kVli~~~~ 49 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEY--ADVKYLVFKPK 49 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHH--TTCCEEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHh--cCCEEEEEEec
Confidence 36899999999999999988887765 46788888763
No 74
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=97.84 E-value=3.1e-05 Score=96.86 Aligned_cols=160 Identities=17% Similarity=0.194 Sum_probs=100.5
Q ss_pred CCCCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHhcccccccc
Q 002841 388 SCNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILGEKAVEVR 467 (874)
Q Consensus 388 ~~~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~~~~~~~~~ 467 (874)
...|.+.|.+|+..++.... .-.++.++.|+|||.+...++.+++..++..++||++|+ +.+.+-.+.+.+..+.
T Consensus 151 ~~~LrpyQ~eav~~~l~~~~-~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f~l--- 225 (968)
T 3dmq_A 151 RTSLIPHQLNIAHDVGRRHA-PRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRFNL--- 225 (968)
T ss_dssp SSCCCHHHHHHHHHHHHSSS-CEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHSCC---
T ss_pred CCCCcHHHHHHHHHHHHhcC-CCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHhCC---
Confidence 35789999999999887432 237899999999999999999888877677799999999 7777777777542111
Q ss_pred cccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhh--hcccCCCCccEEEEEcCCCCC
Q 002841 468 ENEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIY--AEGVDRGHFSHIFLDEAGQAS 545 (874)
Q Consensus 468 ~~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~--~~~~~~~~fd~ViIDEAsQ~~ 545 (874)
.+..+. ..... ... ......+..++|+++|........ ...+....|++||||||-...
T Consensus 226 --~v~v~~----------~~~~~-----~~~--~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~k 286 (968)
T 3dmq_A 226 --RFALFD----------DERYA-----EAQ--HDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLV 286 (968)
T ss_dssp --CCEECC----------HHHHH-----HHH--HTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCC
T ss_pred --CEEEEc----------cchhh-----hhh--hhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhc
Confidence 111110 00000 000 001123356789999987653211 112334579999999996665
Q ss_pred hhhh-----HHHhhccccC-CcEEEEecCCCc
Q 002841 546 EPES-----MVPISSYCKK-DTVVVLAGDPMQ 571 (874)
Q Consensus 546 epe~-----li~L~~l~~~-~~~vVLvGDp~Q 571 (874)
.... ...+..++.+ ..++.|-|=|.|
T Consensus 287 n~~~~~s~~~~~l~~L~~~~~~~L~LTATPi~ 318 (968)
T 3dmq_A 287 WSEDAPSREYQAIEQLAEHVPGVLLLTATPEQ 318 (968)
T ss_dssp CBTTBCCHHHHHHHHHHTTCSSEEESCSSCSS
T ss_pred CCCCcchHHHHHHHHHhhcCCcEEEEEcCCcc
Confidence 3321 2223333222 247888998877
No 75
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.80 E-value=7e-06 Score=82.37 Aligned_cols=36 Identities=25% Similarity=0.297 Sum_probs=29.9
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCC
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPS 447 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApS 447 (874)
..+|.||||+||||.+..++..+.. .+.++++..+.
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~--~g~~v~~~~~~ 40 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKL--GKKKVAVFKPK 40 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH--TTCEEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeec
Confidence 4789999999999999888877765 45788888876
No 76
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=97.78 E-value=4.1e-05 Score=100.56 Aligned_cols=130 Identities=18% Similarity=0.190 Sum_probs=87.1
Q ss_pred CCCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHhccccccccc
Q 002841 389 CNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILGEKAVEVRE 468 (874)
Q Consensus 389 ~~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~~~~~~~~~~ 468 (874)
..+|+-|.+|+..++..... ++|.+|.|||||.+.--+|.+.+...++.++++++|+.+.|.+..+.+.+.-+... .
T Consensus 925 ~~fnpiQ~q~~~~l~~~~~n--vlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~-g 1001 (1724)
T 4f92_B 925 PFFNPIQTQVFNTVYNSDDN--VFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRL-N 1001 (1724)
T ss_dssp SBCCHHHHHHHHHHHSCCSC--EEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTS-C
T ss_pred CCCCHHHHHHHHHHhcCCCc--EEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhc-C
Confidence 45899999999999876543 89999999999998877888877766788999999999999998887764211000 0
Q ss_pred ccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhhhcccC---CCCccEEEEEcCCC
Q 002841 469 NEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYAEGVD---RGHFSHIFLDEAGQ 543 (874)
Q Consensus 469 ~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~~~~~~---~~~fd~ViIDEAsQ 543 (874)
..+..+.. +... ....+..++|+++|.-....+...... -....+|||||+-.
T Consensus 1002 ~~V~~ltG------d~~~----------------~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~ 1057 (1724)
T 4f92_B 1002 KKVVLLTG------ETST----------------DLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHL 1057 (1724)
T ss_dssp CCEEECCS------CHHH----------------HHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGG
T ss_pred CEEEEEEC------CCCc----------------chhhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhh
Confidence 01111110 0000 112346788999998654433221111 12679999999943
No 77
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.78 E-value=2.7e-05 Score=78.59 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=31.0
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCC
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPS 447 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApS 447 (874)
.+++.||+|+||||.+..++..+.. .+.++++..|+
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r~~~--~g~kV~v~k~~ 45 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRRAKI--AKQKIQVFKPE 45 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEEEC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH--CCCEEEEEEec
Confidence 5799999999999999988887764 56899999886
No 78
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.73 E-value=4.9e-05 Score=77.66 Aligned_cols=37 Identities=19% Similarity=0.215 Sum_probs=30.6
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCH
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSN 448 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSN 448 (874)
.+++.||.|+||||.+..++..+.. .+.++|+..|.-
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~~~--~g~kVli~k~~~ 66 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRTQF--AKQHAIVFKPCI 66 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH--TTCCEEEEECC-
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH--CCCEEEEEEecc
Confidence 5789999999999999998887765 568899988753
No 79
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.72 E-value=8.1e-05 Score=90.82 Aligned_cols=123 Identities=21% Similarity=0.168 Sum_probs=75.4
Q ss_pred CHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHH-hcCCCeEEEecCCHHHHHHHHHHHhccccccccccc
Q 002841 392 NEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYA-TREDARLLVCAPSNSAADHLLEKILGEKAVEVRENE 470 (874)
Q Consensus 392 N~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~-~~~~~rILv~ApSNsAaD~l~~rL~~~~~~~~~~~~ 470 (874)
...|++++..++... ..++|.||.|||||+.+...+..... ...+.+|++++|+..++..+.+++....+..+. .
T Consensus 95 ~~~q~~~i~~~l~~~--~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~--~ 170 (773)
T 2xau_A 95 VHAQRDEFLKLYQNN--QIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLG--E 170 (773)
T ss_dssp GGGGHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBT--T
T ss_pred hHHHHHHHHHHHhCC--CeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCchh--h
Confidence 456888888888653 24899999999999955444322211 112567999999999999999988652211110 0
Q ss_pred EEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhhhcccCCCCccEEEEEcCC
Q 002841 471 IFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYAEGVDRGHFSHIFLDEAG 542 (874)
Q Consensus 471 i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~~~~~~~~~fd~ViIDEAs 542 (874)
.+-.. .+ + +. ..-...+|+++|................+++||||||-
T Consensus 171 ~vG~~--i~-----------~---~~--------~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah 218 (773)
T 2xau_A 171 EVGYS--IR-----------F---EN--------KTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAH 218 (773)
T ss_dssp TEEEE--ET-----------T---EE--------ECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGG
T ss_pred eecce--ec-----------c---cc--------ccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCcc
Confidence 00000 00 0 00 00135678888876554433333445689999999994
No 80
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=97.65 E-value=0.00012 Score=91.65 Aligned_cols=153 Identities=18% Similarity=0.175 Sum_probs=93.1
Q ss_pred CCCHHHHHHHHHHhcc-----------CCCCCEEEEcCCCCChhHHHHHHHHHHHHhc-CCCeEEEecCCHHHHHHHHHH
Q 002841 390 NLNEEQMCSIEKILGL-----------KGAPPYLIYGPPGTGKTMTLVEAILQLYATR-EDARLLVCAPSNSAADHLLEK 457 (874)
Q Consensus 390 ~LN~~Q~~AV~~il~~-----------~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~-~~~rILv~ApSNsAaD~l~~r 457 (874)
.+.+.|..||..++.. ....-.+|+.+.|||||.|++.++ +++... ...++|+++|++..++.+.+.
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~-~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAA-RLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHH-HHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHH-HHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 4789999999998752 001236999999999999986665 555432 336999999999999999888
Q ss_pred HhcccccccccccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhc--ccceEEEEechhhhhhhhcc--c-CCCC
Q 002841 458 ILGEKAVEVRENEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAAL--VCYRIIISTYMSASLIYAEG--V-DRGH 532 (874)
Q Consensus 458 L~~~~~~~~~~~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L--~~~~VI~~T~~sa~~l~~~~--~-~~~~ 532 (874)
+..... ..+ .. . .. ...+. ..| ...+|+++|........... . ....
T Consensus 350 f~~f~~-----~~v---~~-~---~s-~~~l~---------------~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~ 401 (1038)
T 2w00_A 350 YQRFSP-----DSV---NG-S---EN-TAGLK---------------RNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQ 401 (1038)
T ss_dssp HHTTST-----TCS---SS-S---CC-CHHHH---------------HHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGS
T ss_pred HHHhcc-----ccc---cc-c---cC-HHHHH---------------HHhcCCCCCEEEEEHHHHHHHHhcccchhcccc
Confidence 865211 000 00 0 00 00010 111 35789999988766533211 1 1236
Q ss_pred ccEEEEEcCCCCChhhhHHHhhccccCCcEEEEecCCCc
Q 002841 533 FSHIFLDEAGQASEPESMVPISSYCKKDTVVVLAGDPMQ 571 (874)
Q Consensus 533 fd~ViIDEAsQ~~epe~li~L~~l~~~~~~vVLvGDp~Q 571 (874)
+++||||||-.......+..|....+....+.|-|=|..
T Consensus 402 ~~lvIiDEAHrs~~~~~~~~I~~~~p~a~~lgfTATP~~ 440 (1038)
T 2w00_A 402 QVVFIFDECHRSQFGEAQKNLKKKFKRYYQFGFTGTPIF 440 (1038)
T ss_dssp CEEEEEESCCTTHHHHHHHHHHHHCSSEEEEEEESSCCC
T ss_pred ccEEEEEccchhcchHHHHHHHHhCCcccEEEEeCCccc
Confidence 899999999554433434344333333345666676654
No 81
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=97.64 E-value=0.00017 Score=86.30 Aligned_cols=167 Identities=17% Similarity=0.248 Sum_probs=100.1
Q ss_pred CCCCCHHHHHHHHHHhcc------CCCCCEEEEcCCCCChhHHHHHHHHHHHHhcC-----CCeEEEecCCHHHHHHHHH
Q 002841 388 SCNLNEEQMCSIEKILGL------KGAPPYLIYGPPGTGKTMTLVEAILQLYATRE-----DARLLVCAPSNSAADHLLE 456 (874)
Q Consensus 388 ~~~LN~~Q~~AV~~il~~------~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~-----~~rILv~ApSNsAaD~l~~ 456 (874)
...|-+.|+++|..+... ....-.|+.-+.|+|||.+++..+..+++..+ ..++||++|+ +.+.+-.+
T Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~ 131 (644)
T 1z3i_X 53 SKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYN 131 (644)
T ss_dssp HTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHH
T ss_pred hhcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHH
Confidence 357899999999987631 11122578889999999999999988877543 2579999997 66666666
Q ss_pred HHhcccccccccccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhhhcccCCCCccEE
Q 002841 457 KILGEKAVEVRENEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYAEGVDRGHFSHI 536 (874)
Q Consensus 457 rL~~~~~~~~~~~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~~~~~~~~~fd~V 536 (874)
.+.+.... ....+.+....+ ......+..+.. . ......+.|+++|..+..... ..+....|++|
T Consensus 132 E~~~~~~~---~~~~~~~~~g~~--~~~~~~~~~~~~-------~--~~~~~~~~vvi~ty~~l~~~~-~~l~~~~~~~v 196 (644)
T 1z3i_X 132 EVGKWLGG---RVQPVAIDGGSK--DEIDSKLVNFIS-------Q--QGMRIPTPILIISYETFRLHA-EVLHKGKVGLV 196 (644)
T ss_dssp HHHHHHGG---GCCEEEECSSCH--HHHHHHHHHHHC-------C--CSSCCSCCEEEEEHHHHHHHT-TTTTTSCCCEE
T ss_pred HHHHHcCC---CeeEEEEeCCCH--HHHHHHHHHHHH-------h--cCCCCCCcEEEeeHHHHHhhH-HHhhcCCccEE
Confidence 66552111 112222222111 000011111100 0 001134679999987665422 34455689999
Q ss_pred EEEcCCCCChhh--hHHHhhccccCCcEEEEecCCCc
Q 002841 537 FLDEAGQASEPE--SMVPISSYCKKDTVVVLAGDPMQ 571 (874)
Q Consensus 537 iIDEAsQ~~epe--~li~L~~l~~~~~~vVLvGDp~Q 571 (874)
|+|||..+-.+. ....+..+. ...++.|-|=|-|
T Consensus 197 I~DEaH~ikn~~~~~~~al~~l~-~~~rl~LTgTPiq 232 (644)
T 1z3i_X 197 ICDEGHRLKNSDNQTYLALNSMN-AQRRVLISGTPIQ 232 (644)
T ss_dssp EETTGGGCCTTCHHHHHHHHHHC-CSEEEEECSSCSG
T ss_pred EEECceecCChhhHHHHHHHhcc-cCcEEEEecCccc
Confidence 999997664432 333343332 3358999999988
No 82
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=97.63 E-value=0.0001 Score=84.38 Aligned_cols=58 Identities=26% Similarity=0.287 Sum_probs=44.3
Q ss_pred HHHHHhccCCCCCEEEEcCCCCChhHH-HHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHh
Q 002841 398 SIEKILGLKGAPPYLIYGPPGTGKTMT-LVEAILQLYATREDARLLVCAPSNSAADHLLEKIL 459 (874)
Q Consensus 398 AV~~il~~~~~~~~lI~GPPGTGKT~T-lve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~ 459 (874)
++..++...+ .+++.||.|||||.+ +..++.+++. .+.++|+++||...|.++.+++.
T Consensus 11 ~i~~~l~~~~--~~lv~a~TGsGKT~~~~~~~l~~~~~--~~~~~lvl~Ptr~La~Q~~~~l~ 69 (451)
T 2jlq_A 11 VDEDIFRKKR--LTIMDLHPGAGKTKRILPSIVREALL--RRLRTLILAPTRVVAAEMEEALR 69 (451)
T ss_dssp CCGGGGSTTC--EEEECCCTTSSCCTTHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHTT
T ss_pred HHHHHHhcCC--eEEEECCCCCCHhhHHHHHHHHHHHh--cCCcEEEECCCHHHHHHHHHHhc
Confidence 4555665433 369999999999996 5555555554 45799999999999999999885
No 83
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.63 E-value=4.1e-05 Score=77.01 Aligned_cols=36 Identities=22% Similarity=0.291 Sum_probs=30.8
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCC
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPS 447 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApS 447 (874)
.++|.||.|+|||+-|..++..... .+.++++.+|.
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~~--~~~kvl~~kp~ 57 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQI--AQYKCLVIKYA 57 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHH--TTCCEEEEEET
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH--cCCeEEEEccc
Confidence 6899999999999999999888765 35889998875
No 84
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=97.57 E-value=0.00012 Score=92.29 Aligned_cols=126 Identities=25% Similarity=0.218 Sum_probs=79.2
Q ss_pred CCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHhccccc-cccc-
Q 002841 391 LNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILGEKAV-EVRE- 468 (874)
Q Consensus 391 LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~~~~~~-~~~~- 468 (874)
+ +.|.+|+..++..+ -+++.||.|||||..+.-++..+.. .+.++|+++||...|..+.+++...... .+..
T Consensus 58 p-~iQ~~ai~~il~g~---dvlv~apTGSGKTl~~lp~l~~~~~--~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~ 131 (1054)
T 1gku_B 58 R-AIQKMWAKRILRKE---SFAATAPTGVGKTSFGLAMSLFLAL--KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTE 131 (1054)
T ss_dssp C-HHHHHHHHHHHTTC---CEECCCCBTSCSHHHHHHHHHHHHT--TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGG
T ss_pred H-HHHHHHHHHHHhCC---CEEEEcCCCCCHHHHHHHHHHHHhh--cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCcc
Confidence 6 99999999999763 3799999999999754444444443 5679999999999999999988753110 0000
Q ss_pred ccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhhhcccCCCCccEEEEEcCC
Q 002841 469 NEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYAEGVDRGHFSHIFLDEAG 542 (874)
Q Consensus 469 ~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~~~~~~~~~fd~ViIDEAs 542 (874)
..+..+.... ..... ....+.+..++|+++|.......... -..+++||||||-
T Consensus 132 ~~v~~~~Gg~------~~~~~-----------~~~~~~l~~~~IlV~TP~~L~~~l~~---L~~l~~lViDEah 185 (1054)
T 1gku_B 132 NLIGYYHGRI------PKREK-----------ENFMQNLRNFKIVITTTQFLSKHYRE---LGHFDFIFVDDVD 185 (1054)
T ss_dssp GSEEECCSSC------CSHHH-----------HHHHHSGGGCSEEEEEHHHHHHCSTT---SCCCSEEEESCHH
T ss_pred ceEEEEeCCC------ChhhH-----------HHHHhhccCCCEEEEcHHHHHHHHHH---hccCCEEEEeChh
Confidence 0111111110 00000 00012234488999998665443322 2379999999993
No 85
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=97.52 E-value=0.00024 Score=84.51 Aligned_cols=102 Identities=20% Similarity=0.287 Sum_probs=67.8
Q ss_pred EEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHhcccccccccccEEEecCCCCCCcCCchhhhh
Q 002841 411 YLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILGEKAVEVRENEIFRLNAPSRPYEDVNADHIR 490 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~~~~~~~~~~~~i~Rl~~~~r~~~~v~~~~~~ 490 (874)
+++.||.|||||..+...+. . .+.++|+++|+...|..+.+++.+..+.. --.+++...
T Consensus 235 vlv~ApTGSGKT~a~~l~ll---~--~g~~vLVl~PTReLA~Qia~~l~~~~g~~----vg~~vG~~~------------ 293 (666)
T 3o8b_A 235 AHLHAPTGSGKSTKVPAAYA---A--QGYKVLVLNPSVAATLGFGAYMSKAHGID----PNIRTGVRT------------ 293 (666)
T ss_dssp EEEECCTTSCTTTHHHHHHH---H--TTCCEEEEESCHHHHHHHHHHHHHHHSCC----CEEECSSCE------------
T ss_pred EEEEeCCchhHHHHHHHHHH---H--CCCeEEEEcchHHHHHHHHHHHHHHhCCC----eeEEECcEe------------
Confidence 79999999999976654333 2 45699999999999999999887521111 111111100
Q ss_pred hccccchhccCCchhhcccceEEEEechhhhhhhhcccCCCCccEEEEEcCCCCChhhhHH
Q 002841 491 FCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYAEGVDRGHFSHIFLDEAGQASEPESMV 551 (874)
Q Consensus 491 ~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~~~~~~~~~fd~ViIDEAsQ~~epe~li 551 (874)
.-...+|+++|.... +....+...++++|||||| +........
T Consensus 294 ---------------~~~~~~IlV~TPGrL--l~~~~l~l~~l~~lVlDEA-H~l~~~~~~ 336 (666)
T 3o8b_A 294 ---------------ITTGAPVTYSTYGKF--LADGGCSGGAYDIIICDEC-HSTDSTTIL 336 (666)
T ss_dssp ---------------ECCCCSEEEEEHHHH--HHTTSCCTTSCSEEEETTT-TCCSHHHHH
T ss_pred ---------------ccCCCCEEEECcHHH--HhCCCcccCcccEEEEccc-hhcCccHHH
Confidence 114568899987543 2223444557999999999 777665543
No 86
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=97.50 E-value=0.00026 Score=86.95 Aligned_cols=170 Identities=15% Similarity=0.178 Sum_probs=99.7
Q ss_pred CCCCCHHHHHHHHHHhcc-CCCCCEEEEcCCCCChhHHHHHHHHHHHHhc-CCCeEEEecCCHHHHHHHHHHHhcccccc
Q 002841 388 SCNLNEEQMCSIEKILGL-KGAPPYLIYGPPGTGKTMTLVEAILQLYATR-EDARLLVCAPSNSAADHLLEKILGEKAVE 465 (874)
Q Consensus 388 ~~~LN~~Q~~AV~~il~~-~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~-~~~rILv~ApSNsAaD~l~~rL~~~~~~~ 465 (874)
+..|-+.|+++|..++.. ....-.++.-+.|+|||.+++..+..++... ...++||++| .+.+.+-.+.+.+.
T Consensus 234 ~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~---- 308 (800)
T 3mwy_W 234 GGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKW---- 308 (800)
T ss_dssp SSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHH----
T ss_pred CCCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHH----
Confidence 457899999999876521 1112368899999999999988888776433 4568999999 55667777777652
Q ss_pred cccccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhhhcccCCCCccEEEEEcCCCCC
Q 002841 466 VRENEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYAEGVDRGHFSHIFLDEAGQAS 545 (874)
Q Consensus 466 ~~~~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~~~~~~~~~fd~ViIDEAsQ~~ 545 (874)
.+...+..+....+ ....+..+...... .........++|+++|........ ..+....|++||||||..+-
T Consensus 309 ~p~~~v~~~~g~~~----~r~~~~~~~~~~~~---~~~~~~~~~~dvvitTy~~l~~~~-~~l~~~~w~~vIvDEaH~lk 380 (800)
T 3mwy_W 309 APDLNCICYMGNQK----SRDTIREYEFYTNP---RAKGKKTMKFNVLLTTYEYILKDR-AELGSIKWQFMAVDEAHRLK 380 (800)
T ss_dssp STTCCEEECCCSSH----HHHHHHHHHSCSCC--------CCCCCSEEEECTTHHHHTH-HHHHTSEEEEEEETTGGGGC
T ss_pred CCCceEEEEeCCHH----HHHHHHHHHhhccc---cccccccccCCEEEecHHHHHhhH-HHHhcCCcceeehhhhhhhc
Confidence 22222332222111 00111111111000 001123457789999988765422 22334479999999997663
Q ss_pred h--hhhHHHhhccccCCcEEEEecCCCc
Q 002841 546 E--PESMVPISSYCKKDTVVVLAGDPMQ 571 (874)
Q Consensus 546 e--pe~li~L~~l~~~~~~vVLvGDp~Q 571 (874)
. ......+..+. ...++.|-|=|-|
T Consensus 381 n~~s~~~~~l~~l~-~~~rl~LTgTPiq 407 (800)
T 3mwy_W 381 NAESSLYESLNSFK-VANRMLITGTPLQ 407 (800)
T ss_dssp CSSSHHHHHHTTSE-EEEEEEECSCCCS
T ss_pred CchhHHHHHHHHhh-hccEEEeeCCcCC
Confidence 3 33333444332 3357999999977
No 87
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=97.47 E-value=0.0004 Score=91.27 Aligned_cols=127 Identities=20% Similarity=0.222 Sum_probs=83.3
Q ss_pred CCCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhc---------CCCeEEEecCCHHHHHHHHHHHh
Q 002841 389 CNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATR---------EDARLLVCAPSNSAADHLLEKIL 459 (874)
Q Consensus 389 ~~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~---------~~~rILv~ApSNsAaD~l~~rL~ 459 (874)
..||+-|.+++..++..... ++|.+|-|+|||.+..-+|++.+... .+.++++++|+.+-|.+..+.+.
T Consensus 78 ~~ln~iQs~~~~~al~~~~N--~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 78 KTLNRIQSKLYRAALETDEN--LLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp SBCCHHHHHTHHHHHTCCCC--EEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCCCc--EEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 57999999999999975433 89999999999998777777666432 35689999999999999988876
Q ss_pred cccccccccccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhhhhhcccC---CCCccEE
Q 002841 460 GEKAVEVRENEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYAEGVD---RGHFSHI 536 (874)
Q Consensus 460 ~~~~~~~~~~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~~~~~~---~~~fd~V 536 (874)
+. +.... ++++.... +.. .....+..++|+++|.-....+...... -....+|
T Consensus 156 ~~----~~~~g-i~V~~~tG---d~~----------------~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~v 211 (1724)
T 4f92_B 156 KR----LATYG-ITVAELTG---DHQ----------------LCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLI 211 (1724)
T ss_dssp HH----HTTTT-CCEEECCS---SCS----------------SCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEE
T ss_pred HH----HhhCC-CEEEEEEC---CCC----------------CCccccCCCCEEEECHHHHHHHHcCCccchhhcCcCEE
Confidence 52 11100 01110000 000 0112346788999997655433222111 1368899
Q ss_pred EEEcC
Q 002841 537 FLDEA 541 (874)
Q Consensus 537 iIDEA 541 (874)
||||+
T Consensus 212 IiDEv 216 (1724)
T 4f92_B 212 ILDEI 216 (1724)
T ss_dssp EETTG
T ss_pred EEecc
Confidence 99999
No 88
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.46 E-value=0.00034 Score=70.40 Aligned_cols=42 Identities=33% Similarity=0.568 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHH
Q 002841 392 NEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLY 433 (874)
Q Consensus 392 N~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll 433 (874)
.....+.+...+.....++++|.||||||||+++...+..+.
T Consensus 22 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 22 QDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 566777787777655445699999999999987766555443
No 89
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=97.44 E-value=0.00016 Score=73.82 Aligned_cols=37 Identities=19% Similarity=0.198 Sum_probs=29.6
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCH
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSN 448 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSN 448 (874)
..+|.||-|+||||.+..++..+.. .+.++++..|.-
T Consensus 30 I~vitG~M~sGKTT~Llr~~~r~~~--~g~kvli~kp~~ 66 (219)
T 3e2i_A 30 IECITGSMFSGKSEELIRRLRRGIY--AKQKVVVFKPAI 66 (219)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHH--TTCCEEEEEEC-
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--cCCceEEEEecc
Confidence 5799999999999988888766654 457899998853
No 90
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=97.34 E-value=0.00034 Score=82.82 Aligned_cols=64 Identities=22% Similarity=0.219 Sum_probs=51.7
Q ss_pred CCCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHhc
Q 002841 389 CNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILG 460 (874)
Q Consensus 389 ~~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~~ 460 (874)
..+.+.|.+||..++..+ .++|.+|.|+|||.+..-.+ +. .+.++||++|+.+.+....+++.+
T Consensus 43 ~~~rp~Q~~~i~~il~g~---d~lv~~pTGsGKTl~~~lpa--l~---~~g~~lVisP~~~L~~q~~~~l~~ 106 (591)
T 2v1x_A 43 EKFRPLQLETINVTMAGK---EVFLVMPTGGGKSLCYQLPA--LC---SDGFTLVICPLISLMEDQLMVLKQ 106 (591)
T ss_dssp CSCCTTHHHHHHHHHTTC---CEEEECCTTSCTTHHHHHHH--HT---SSSEEEEECSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCC---CEEEEECCCChHHHHHHHHH--HH---cCCcEEEEeCHHHHHHHHHHHHHh
Confidence 357888999999999864 37999999999997643322 22 356999999999999999999876
No 91
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=97.33 E-value=0.00056 Score=78.41 Aligned_cols=48 Identities=25% Similarity=0.308 Sum_probs=39.2
Q ss_pred CEEEEcCCCCChhHHH-HHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHh
Q 002841 410 PYLIYGPPGTGKTMTL-VEAILQLYATREDARLLVCAPSNSAADHLLEKIL 459 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tl-ve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~ 459 (874)
.++|.||.|||||.+. ..++..++. .+.++|+++|+...|.++.+++.
T Consensus 23 ~vlv~a~TGsGKT~~~~l~il~~~~~--~~~~~lvl~Ptr~La~Q~~~~l~ 71 (459)
T 2z83_A 23 MTVLDLHPGSGKTRKILPQIIKDAIQ--QRLRTAVLAPTRVVAAEMAEALR 71 (459)
T ss_dssp EEEECCCTTSCTTTTHHHHHHHHHHH--TTCCEEEEECSHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHh--CCCcEEEECchHHHHHHHHHHhc
Confidence 4799999999999984 444444443 46799999999999999999986
No 92
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=97.24 E-value=0.00032 Score=81.77 Aligned_cols=124 Identities=18% Similarity=0.183 Sum_probs=76.0
Q ss_pred CCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHhcccccccccc
Q 002841 390 NLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILGEKAVEVREN 469 (874)
Q Consensus 390 ~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~~~~~~~~~~~ 469 (874)
.+.+.|.+|+..++..+ -++|.+|.|+|||.+.. +-.+. ...++|+++|+.+.+....+++... +.
T Consensus 25 ~~r~~Q~~~i~~il~g~---d~lv~apTGsGKTl~~~--lp~l~---~~g~~lvi~P~~aL~~q~~~~l~~~-gi----- 90 (523)
T 1oyw_A 25 QFRPGQEEIIDTVLSGR---DCLVVMPTGGGKSLCYQ--IPALL---LNGLTVVVSPLISLMKDQVDQLQAN-GV----- 90 (523)
T ss_dssp SCCTTHHHHHHHHHTTC---CEEEECSCHHHHHHHHH--HHHHH---SSSEEEEECSCHHHHHHHHHHHHHT-TC-----
T ss_pred CCCHHHHHHHHHHHcCC---CEEEECCCCcHHHHHHH--HHHHH---hCCCEEEECChHHHHHHHHHHHHHc-CC-----
Confidence 56788999999999764 37999999999997543 22222 2468999999999999999998762 11
Q ss_pred cEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhh-hhhcccCCCCccEEEEEcCC
Q 002841 470 EIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASL-IYAEGVDRGHFSHIFLDEAG 542 (874)
Q Consensus 470 ~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~-l~~~~~~~~~fd~ViIDEAs 542 (874)
....++.... . .+.... ... -.-...+|+++|...... .....+....+++|+||||-
T Consensus 91 ~~~~l~~~~~-~----~~~~~~---~~~-------~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH 149 (523)
T 1oyw_A 91 AAACLNSTQT-R----EQQLEV---MTG-------CRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAH 149 (523)
T ss_dssp CEEEECTTSC-H----HHHHHH---HHH-------HHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGG
T ss_pred cEEEEeCCCC-H----HHHHHH---HHH-------HhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCcc
Confidence 1222222110 0 000000 000 001346788888754421 11122334688999999994
No 93
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.19 E-value=0.0025 Score=69.10 Aligned_cols=53 Identities=26% Similarity=0.252 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHhccC--CCCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecC
Q 002841 392 NEEQMCSIEKILGLK--GAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAP 446 (874)
Q Consensus 392 N~~Q~~AV~~il~~~--~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~Ap 446 (874)
|.....++..++... ...+++|.||||||||+.+...+..+... +.+++.+..
T Consensus 19 ~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~--~~~~~~i~~ 73 (324)
T 1l8q_A 19 NRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSSA 73 (324)
T ss_dssp THHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT--TCCEEEEEH
T ss_pred HHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEH
Confidence 444445555555443 23579999999999998766555544432 456666543
No 94
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.17 E-value=0.0017 Score=74.00 Aligned_cols=56 Identities=23% Similarity=0.263 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHhccCC-CCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCC
Q 002841 392 NEEQMCSIEKILGLKG-APPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPS 447 (874)
Q Consensus 392 N~~Q~~AV~~il~~~~-~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApS 447 (874)
|..-..++..+....+ ..+++|.||||||||+.+..+...+....++.+++.+..+
T Consensus 113 n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~ 169 (440)
T 2z4s_A 113 NSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_dssp THHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH
T ss_pred hHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence 4443444555544433 4589999999999998776655555554456777766543
No 95
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=97.15 E-value=0.00048 Score=81.91 Aligned_cols=58 Identities=21% Similarity=0.257 Sum_probs=43.5
Q ss_pred HHHHHhccCCCCCEEEEcCCCCChhHHH-HHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHhc
Q 002841 398 SIEKILGLKGAPPYLIYGPPGTGKTMTL-VEAILQLYATREDARLLVCAPSNSAADHLLEKILG 460 (874)
Q Consensus 398 AV~~il~~~~~~~~lI~GPPGTGKT~Tl-ve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~~ 460 (874)
++..++.. ..+++.||.|||||.+. ..++..++. .+.++|+++||...|+++.+++..
T Consensus 179 ~i~~l~~g---~dvlv~a~TGSGKT~~~~lpil~~l~~--~~~~vLvl~PtreLa~Qi~~~l~~ 237 (618)
T 2whx_A 179 DEDIFRKK---RLTIMDLHPGAGKTKRILPSIVREALK--RRLRTLILAPTRVVAAEMEEALRG 237 (618)
T ss_dssp CGGGGSTT---CEEEECCCTTSSTTTTHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHTTT
T ss_pred CHHHHhcC---CeEEEEcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEcChHHHHHHHHHHhcC
Confidence 34444443 34799999999999985 444444444 457999999999999999998863
No 96
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.14 E-value=0.00091 Score=73.25 Aligned_cols=36 Identities=17% Similarity=0.139 Sum_probs=24.7
Q ss_pred HHHHHhccCCCCC-EEEEcCCCCChhHHHHHHHHHHH
Q 002841 398 SIEKILGLKGAPP-YLIYGPPGTGKTMTLVEAILQLY 433 (874)
Q Consensus 398 AV~~il~~~~~~~-~lI~GPPGTGKT~Tlve~I~~ll 433 (874)
.+...+.....++ +++.||||||||+++...+..+.
T Consensus 13 ~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 13 KLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp HHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHh
Confidence 3444444433344 89999999999998776666554
No 97
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=97.10 E-value=0.00067 Score=69.90 Aligned_cols=36 Identities=22% Similarity=0.291 Sum_probs=30.2
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCC
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPS 447 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApS 447 (874)
..++.||.|+||||.+..++..... .+.++++..|.
T Consensus 21 l~v~~G~MgsGKTT~lL~~~~r~~~--~g~kvli~kp~ 56 (234)
T 2orv_A 21 IQVILGPMFSGKSTELMRRVRRFQI--AQYKCLVIKYA 56 (234)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHT--TTCCEEEEEET
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH--CCCeEEEEeec
Confidence 5799999999999999988877654 56889998874
No 98
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=97.10 E-value=0.0027 Score=72.07 Aligned_cols=48 Identities=21% Similarity=0.356 Sum_probs=39.0
Q ss_pred CEEEEcCCCCChhHHHHHHHH-HHHHhcCCCeEEEecCCHHHHHHHHHHHh
Q 002841 410 PYLIYGPPGTGKTMTLVEAIL-QLYATREDARLLVCAPSNSAADHLLEKIL 459 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~-~ll~~~~~~rILv~ApSNsAaD~l~~rL~ 459 (874)
.++|.||.|||||.+..-.+. .++. .+.++|+++||...|+++.+.+.
T Consensus 4 ~~lv~a~TGsGKT~~~l~~~l~~~~~--~g~~~lvl~Pt~~La~Q~~~~~~ 52 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRVLPQLVREAVK--KRLRTVILAPTRVVASEMYEALR 52 (431)
T ss_dssp EEEEECCTTSCTTTTHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHh--CCCCEEEECcHHHHHHHHHHHhC
Confidence 479999999999998644444 4443 45799999999999999998885
No 99
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.10 E-value=0.00054 Score=74.21 Aligned_cols=48 Identities=17% Similarity=0.126 Sum_probs=30.3
Q ss_pred CCccEEEEEcCCCCChhhhHHHhhc-ccc--CCcEEEEe-cCCCcccceeecc
Q 002841 531 GHFSHIFLDEAGQASEPESMVPISS-YCK--KDTVVVLA-GDPMQLGPVIYSR 579 (874)
Q Consensus 531 ~~fd~ViIDEAsQ~~epe~li~L~~-l~~--~~~~vVLv-GDp~QL~PvI~s~ 579 (874)
+.+.+||||||...+.. ..-.|.. +-. ..+.+||+ -++..|.|.|.|.
T Consensus 81 ~~~kvviIdead~lt~~-a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR 132 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQ-AANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR 132 (305)
T ss_dssp SSSEEEEETTGGGBCHH-HHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT
T ss_pred CCceEEEeccHHHhCHH-HHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce
Confidence 36899999999555543 3333332 322 24566666 4677888888777
No 100
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=97.09 E-value=0.0011 Score=77.71 Aligned_cols=64 Identities=16% Similarity=0.195 Sum_probs=47.7
Q ss_pred CCCHHHHHHHHHHh---ccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHhc
Q 002841 390 NLNEEQMCSIEKIL---GLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILG 460 (874)
Q Consensus 390 ~LN~~Q~~AV~~il---~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~~ 460 (874)
.+-+.|.+++..+. ... ...+|.+|.|||||.+..-.+.. .+.+++++|||+..++.+.+.+..
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~--~~~~~~a~TGtGKT~~~l~p~l~-----~~~~v~i~~pt~~l~~q~~~~~~~ 69 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNN--FLVALNAPTGSGKTLFSLLVSLE-----VKPKVLFVVRTHNEFYPIYRDLTK 69 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTT--CEEEEECCTTSSHHHHHHHHHHH-----HCSEEEEEESSGGGHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHcC--CcEEEECCCCccHHHHHHHHHHh-----CCCeEEEEcCCHHHHHHHHHHHHH
Confidence 35688998666543 332 34799999999998765544433 357999999999999999887765
No 101
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.07 E-value=0.001 Score=71.68 Aligned_cols=42 Identities=26% Similarity=0.481 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHH
Q 002841 392 NEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLY 433 (874)
Q Consensus 392 N~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll 433 (874)
.++..+.+...+.....+++++.||||||||+++...+..+.
T Consensus 30 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 30 QEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp CHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 567777777777655445699999999999988766555443
No 102
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=97.05 E-value=0.00096 Score=79.99 Aligned_cols=50 Identities=26% Similarity=0.346 Sum_probs=39.9
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHhc
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILG 460 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~~ 460 (874)
..+|.||.|||||.+..-.+.+.+.. .+.++|+++||...|.++.+++..
T Consensus 243 dvlv~apTGSGKTl~~ll~il~~l~~-~~~~~lilaPTr~La~Q~~~~l~~ 292 (673)
T 2wv9_A 243 LTVLDLHPGAGKTRRILPQIIKDAIQ-KRLRTAVLAPTRVVAAEMAEALRG 292 (673)
T ss_dssp EEEECCCTTTTTTTTHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHTTT
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHh-CCCcEEEEccHHHHHHHHHHHHhc
Confidence 47999999999999854444443332 457999999999999999999874
No 103
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=97.02 E-value=0.0018 Score=75.71 Aligned_cols=64 Identities=17% Similarity=0.203 Sum_probs=46.0
Q ss_pred CCCHHHHHHHHHHh---ccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHhc
Q 002841 390 NLNEEQMCSIEKIL---GLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILG 460 (874)
Q Consensus 390 ~LN~~Q~~AV~~il---~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~~ 460 (874)
.+.+.|.+++..+. ... ...+|.+|.|||||.+..-.+ +. .+.+++++|||+..++.+.+.+..
T Consensus 7 ~~r~~Q~~~~~~v~~~~~~~--~~~~~~a~TGtGKT~~~l~~~--~~---~~~~~~~~~~t~~l~~q~~~~~~~ 73 (540)
T 2vl7_A 7 QLRQWQAEKLGEAINALKHG--KTLLLNAKPGLGKTVFVEVLG--MQ---LKKKVLIFTRTHSQLDSIYKNAKL 73 (540)
T ss_dssp --CCHHHHHHHHHHHHHHTT--CEEEEECCTTSCHHHHHHHHH--HH---HTCEEEEEESCHHHHHHHHHHHGG
T ss_pred CCCHHHHHHHHHHHHHHHcC--CCEEEEcCCCCcHHHHHHHHH--Hh---CCCcEEEEcCCHHHHHHHHHHHHh
Confidence 45678988766543 222 347999999999996543322 22 257999999999999999988765
No 104
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.92 E-value=0.0018 Score=69.51 Aligned_cols=42 Identities=33% Similarity=0.568 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHH
Q 002841 392 NEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLY 433 (874)
Q Consensus 392 N~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll 433 (874)
++...+.+...+.....+++++.||||||||+++...+..+.
T Consensus 22 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 22 QDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp CHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhc
Confidence 566777777777655556799999999999988766555543
No 105
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.91 E-value=0.0014 Score=70.51 Aligned_cols=42 Identities=29% Similarity=0.404 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHH
Q 002841 392 NEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLY 433 (874)
Q Consensus 392 N~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll 433 (874)
.+...+.+...+.....+.++|.||||||||+++...+..+.
T Consensus 26 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 26 NKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp CTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 455666777777654445699999999999987766555543
No 106
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=96.91 E-value=0.0024 Score=72.71 Aligned_cols=50 Identities=30% Similarity=0.382 Sum_probs=40.0
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHhc
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILG 460 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~~ 460 (874)
..+|+||.|||||.+..-.+.+.+.. .+.++|+++||...|.++.+++..
T Consensus 10 ~vlv~a~TGSGKT~~~l~~~l~~~~~-~~~~~lil~Ptr~La~Q~~~~l~~ 59 (440)
T 1yks_A 10 TTVLDFHPGAGKTRRFLPQILAECAR-RRLRTLVLAPTRVVLSEMKEAFHG 59 (440)
T ss_dssp EEEECCCTTSSTTTTHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHTTT
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHh-cCCeEEEEcchHHHHHHHHHHHhc
Confidence 47999999999999865444443332 457999999999999999999874
No 107
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.88 E-value=0.0034 Score=68.02 Aligned_cols=38 Identities=26% Similarity=0.219 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHHhccCCCC-CEEEEcCCCCChhHHHHHH
Q 002841 391 LNEEQMCSIEKILGLKGAP-PYLIYGPPGTGKTMTLVEA 428 (874)
Q Consensus 391 LN~~Q~~AV~~il~~~~~~-~~lI~GPPGTGKT~Tlve~ 428 (874)
.+++..+.+...+.....+ ++++.||||||||+++...
T Consensus 30 g~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~l 68 (324)
T 3u61_B 30 LPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKAL 68 (324)
T ss_dssp CCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHH
Confidence 4677788888888654433 4567777999999876544
No 108
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.68 E-value=0.0068 Score=60.94 Aligned_cols=124 Identities=15% Similarity=0.121 Sum_probs=70.9
Q ss_pred CCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHH----HHHHHHHHhcccccccccccEEEecCCCCCCcCC
Q 002841 409 PPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSA----ADHLLEKILGEKAVEVRENEIFRLNAPSRPYEDV 484 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsA----aD~l~~rL~~~~~~~~~~~~i~Rl~~~~r~~~~v 484 (874)
+.++|++++|+||||.+...+...+. .+.||+++.+-..+ =..+.++|. ..+.+.+... .+..
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g--~G~rV~~vQF~Kg~~~~gE~~~l~~L~---------v~~~~~g~gf-~~~~- 95 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVG--HGKNVGVVQFIKGTWPNGERNLLEPHG---------VEFQVMATGF-TWET- 95 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHH--TTCCEEEEESSCCSSCCHHHHHHGGGT---------CEEEECCTTC-CCCG-
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEEeeCCCCCccHHHHHHhCC---------cEEEEccccc-ccCC-
Confidence 56999999999999999988888775 57899999775521 122333331 2344444311 1110
Q ss_pred chhhhhhccccchhccCCchhhcccceEEEEechhhhhhhhcccCCCCccEEEEEcC------CCCChhhhHHHhhcccc
Q 002841 485 NADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYAEGVDRGHFSHIFLDEA------GQASEPESMVPISSYCK 558 (874)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~l~~~~~~~~~fd~ViIDEA------sQ~~epe~li~L~~l~~ 558 (874)
+.... +. ..+ ..+-......+..+.||+||+||. +....++.+-.|. -..
T Consensus 96 -~~~~~----~~-----------~~a-------~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~-~Rp 151 (196)
T 1g5t_A 96 -QNREA----DT-----------AAC-------MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALN-ARP 151 (196)
T ss_dssp -GGHHH----HH-----------HHH-------HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHH-TSC
T ss_pred -CCcHH----HH-----------HHH-------HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHH-hCc
Confidence 00000 00 000 000111122344568999999999 6677777666665 334
Q ss_pred CCcEEEEecCC
Q 002841 559 KDTVVVLAGDP 569 (874)
Q Consensus 559 ~~~~vVLvGDp 569 (874)
....+|+.|-.
T Consensus 152 ~~~~vIlTGr~ 162 (196)
T 1g5t_A 152 GHQTVIITGRG 162 (196)
T ss_dssp TTCEEEEECSS
T ss_pred CCCEEEEECCC
Confidence 45678888754
No 109
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.50 E-value=0.0058 Score=62.36 Aligned_cols=54 Identities=17% Similarity=0.254 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEec
Q 002841 390 NLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCA 445 (874)
Q Consensus 390 ~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~A 445 (874)
..|....+++..........+++|.||||||||+++...+..+.. .+.+++.+.
T Consensus 34 ~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~--~~~~~~~~~ 87 (242)
T 3bos_A 34 AGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANE--LERRSFYIP 87 (242)
T ss_dssp -CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEE
Confidence 346677777777765433457999999999999987665555443 234454443
No 110
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.41 E-value=0.0042 Score=70.79 Aligned_cols=30 Identities=27% Similarity=0.511 Sum_probs=20.8
Q ss_pred HHHHHHhccCCCCCEEEEcCCCCChhHHHH
Q 002841 397 CSIEKILGLKGAPPYLIYGPPGTGKTMTLV 426 (874)
Q Consensus 397 ~AV~~il~~~~~~~~lI~GPPGTGKT~Tlv 426 (874)
..+...+.....++++++||||||||+++-
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHHHHHH
Confidence 344455544333568999999999998654
No 111
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.40 E-value=0.028 Score=62.54 Aligned_cols=68 Identities=13% Similarity=0.079 Sum_probs=55.0
Q ss_pred CCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHhc
Q 002841 390 NLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILG 460 (874)
Q Consensus 390 ~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~~ 460 (874)
.|++.|+..+..+-.. ...+|..|-+.|||++++..+...+...++.+|+++|+|...|..+.+++..
T Consensus 163 ~L~p~Qk~il~~l~~~---R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~ 230 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSK---RMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQ 230 (385)
T ss_dssp CCCHHHHHHHHHHHHS---SEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccC---cEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 6899999998865432 2379999999999999888777655545778999999999999888877754
No 112
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.32 E-value=0.0084 Score=67.79 Aligned_cols=34 Identities=21% Similarity=0.201 Sum_probs=25.9
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEec
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCA 445 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~A 445 (874)
.+++.||+|+|||||+..++..+.. .+.+|++++
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~~l~~--~G~kVllv~ 132 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYFYKK--RGYKVGLVA 132 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHH--TTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEe
Confidence 4678899999999999988876654 356665544
No 113
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.27 E-value=0.0038 Score=60.96 Aligned_cols=42 Identities=19% Similarity=0.328 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHH
Q 002841 392 NEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLY 433 (874)
Q Consensus 392 N~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll 433 (874)
.+++.+.+...+......+++|.||||||||+++...+..+.
T Consensus 27 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 27 RDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp CHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 355666666666544445689999999999998766555544
No 114
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=96.18 E-value=0.00084 Score=85.80 Aligned_cols=64 Identities=14% Similarity=0.251 Sum_probs=41.8
Q ss_pred CeEECccccCCCceeeEEEEEeccCCCcCCc--cccccccc-------------------cCCCCCceEeccccccccEE
Q 002841 727 DIKVGSVEQFQGQERQVIIVSTVRSTIKHND--FDRKHCLG-------------------FLSNPRRFNVAVTRAISLLI 785 (874)
Q Consensus 727 ~v~V~TVd~fQG~E~dvVIiS~VRs~~~~~~--~d~~~~lG-------------------Fl~d~rrlNVAiTRAK~~Li 785 (874)
.|.|.|||+.+|.|+++||+..+-....... +......| ...+.|.||||+||||..|+
T Consensus 735 ~V~ImTIHkSKGLEfpvVfl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~Ee~RLlYVAlTRAk~~L~ 814 (1180)
T 1w36_B 735 LVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCS 814 (1180)
T ss_dssp SEEEEETTTTSSCCEEEEEETTTTCCCCCCSCEEECTTTCCEEEESSCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEE
T ss_pred eEEEEEEeccCCCcCCEEEEeccccCCCCCCCeeecCCCcceeecCCCcHHHHHHHHHHHHHHHhhHHhhhhcchhhheE
Confidence 5999999999999999999965532110000 00000000 01234779999999999999
Q ss_pred EEEcc
Q 002841 786 IIGNP 790 (874)
Q Consensus 786 IvGn~ 790 (874)
|....
T Consensus 815 l~~~~ 819 (1180)
T 1w36_B 815 LGVAP 819 (1180)
T ss_dssp EEECC
T ss_pred EEeec
Confidence 98543
No 115
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=96.16 E-value=0.01 Score=71.08 Aligned_cols=45 Identities=22% Similarity=0.400 Sum_probs=35.2
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHhc
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILG 460 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~~ 460 (874)
.+++.||.|||||+.+..+ +... .+.++++|+..+|.++.+++.+
T Consensus 157 ~vlv~apTGSGKT~~al~~---l~~~---~~gl~l~PtR~LA~Qi~~~l~~ 201 (677)
T 3rc3_A 157 IIFHSGPTNSGKTYHAIQK---YFSA---KSGVYCGPLKLLAHEIFEKSNA 201 (677)
T ss_dssp EEEEECCTTSSHHHHHHHH---HHHS---SSEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH---HHhc---CCeEEEeCHHHHHHHHHHHHHh
Confidence 4799999999999844333 3332 3448899999999999999976
No 116
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.14 E-value=0.044 Score=64.67 Aligned_cols=69 Identities=13% Similarity=0.078 Sum_probs=55.8
Q ss_pred CCCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHhc
Q 002841 389 CNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILG 460 (874)
Q Consensus 389 ~~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~~ 460 (874)
..|++.|+..+..+-.. ...+|.+|.|+|||++++..+...+...++.+|+++++|...|..+.+++..
T Consensus 162 ~~l~p~Q~~i~~~l~~~---r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~ 230 (592)
T 3cpe_A 162 VQLRDYQRDMLKIMSSK---RMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQ 230 (592)
T ss_dssp CCCCHHHHHHHHHHHHC---SEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHhhccc---cEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHH
Confidence 36899999998876322 3479999999999999987777666556777999999999999988877754
No 117
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.10 E-value=0.014 Score=63.98 Aligned_cols=41 Identities=27% Similarity=0.302 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHhccCCC-CCEEEEcCCCCChhHHHHHHHHHH
Q 002841 392 NEEQMCSIEKILGLKGA-PPYLIYGPPGTGKTMTLVEAILQL 432 (874)
Q Consensus 392 N~~Q~~AV~~il~~~~~-~~~lI~GPPGTGKT~Tlve~I~~l 432 (874)
.+...+.+...+..... ..++|.||||||||+++...+..+
T Consensus 21 ~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 55666667666654332 347999999999998876554443
No 118
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.05 E-value=0.0047 Score=56.06 Aligned_cols=79 Identities=16% Similarity=0.115 Sum_probs=59.1
Q ss_pred ccCCCCcceeeecCCeEEEEEEEEcCCCccEEEeeecccCCCCceEEEEecCCCCCCCCCCCCccceeeecccceeeCCC
Q 002841 47 FPFIDGKPQSVSVGETAVDSITIKNTTREPVELWSKIYASTPENTFTLSVMKPPSPGSDSGTNRGFVEFFTLEERMIQPG 126 (874)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 126 (874)
.+|+ .+..|+...-+++|+|+|..|..+.-..........|+++ -....|.||
T Consensus 17 ldFG-----~v~~g~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~----------------------p~~g~i~pg 69 (112)
T 2e6j_A 17 LDIG-----KVFTGSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFS----------------------PKEGIIEPS 69 (112)
T ss_dssp EEEE-----EEESSCCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEE----------------------SSEEEECTT
T ss_pred EecE-----eEEECCEEEEEEEEEECCcceEEEEEecCCccccCcEEEE----------------------CCcCEECCC
Confidence 5677 8889999999999999999998775511100000124442 123569999
Q ss_pred CeEEEEEEEecCccceEeEEEEEEcc
Q 002841 127 QTLTIWLSCKPKGIGLHTTVLQFDVE 152 (874)
Q Consensus 127 ~~~~~~~~~~~~~~g~~~~~~~f~~~ 152 (874)
++.+|.|+|+++..|.|.+++.+...
T Consensus 70 ~~~~i~V~f~~~~~g~f~~~i~v~~~ 95 (112)
T 2e6j_A 70 GVQAIQISFSSIILGNFEEEFLVNVN 95 (112)
T ss_dssp BCCEEEEEECCCCCEEEEEEECEEES
T ss_pred CEEEEEEEEECCCcceEEEEEEEEEC
Confidence 99999999999999999999888775
No 119
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.02 E-value=0.0046 Score=60.32 Aligned_cols=42 Identities=19% Similarity=0.358 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHH
Q 002841 392 NEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLY 433 (874)
Q Consensus 392 N~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll 433 (874)
.+.+.+.+...+......+++|.||||||||+++...+..+.
T Consensus 27 ~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 27 RDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp CHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 345556666666544445689999999999988766555543
No 120
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.94 E-value=0.0072 Score=55.99 Aligned_cols=77 Identities=14% Similarity=0.265 Sum_probs=59.9
Q ss_pred eccccCCCCcceeeecCCeEEEEEEEEcCCCccEEEeeecccCCCCceEEEEecCCCCCCCCCCCCccceeeecccceee
Q 002841 44 SFPFPFIDGKPQSVSVGETAVDSITIKNTTREPVELWSKIYASTPENTFTLSVMKPPSPGSDSGTNRGFVEFFTLEERMI 123 (874)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (874)
....+|+ .+.+|+++..+|.|+|+|..++.+.-+ ....|+++ | ....|
T Consensus 29 p~~l~fg-----~~~v~~~~~~~~~l~N~g~~~~~f~~~-----~~~~F~i~----P------------------~~g~L 76 (122)
T 2ys4_A 29 PDKLNFS-----TCPVKYSTQKILLVRNIGNKNAVFHIK-----TCRPFSIE----P------------------AIGTL 76 (122)
T ss_dssp CSEECCC-----SEESSSCEEEEEEEECCSSSCEEEEEE-----CCTTEEEE----S------------------SEEEE
T ss_pred CCeeecC-----CeecCCeEEEEEEEEECCCCCEEEEEe-----cCCCeEEE----C------------------CcCEE
Confidence 3346677 788999999999999999999875322 22345552 1 12469
Q ss_pred CCCCeEEEEEEEecCccceEeEEEEEEcc
Q 002841 124 QPGQTLTIWLSCKPKGIGLHTTVLQFDVE 152 (874)
Q Consensus 124 ~~g~~~~~~~~~~~~~~g~~~~~~~f~~~ 152 (874)
.||+...|.|+|+|+..|.|.+.+.+.+.
T Consensus 77 ~pg~~~~i~V~F~P~~~g~~~~~l~v~~~ 105 (122)
T 2ys4_A 77 NVGESMQLEVEFEPQSVGDHSGRLIVCYD 105 (122)
T ss_dssp CTTCEEEEEEEECCSSSBCCCCBCEEEES
T ss_pred CCCCEEEEEEEEEcCCCccEEEEEEEEEC
Confidence 99999999999999999999998887765
No 121
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.94 E-value=0.0082 Score=59.03 Aligned_cols=53 Identities=23% Similarity=0.264 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHhc---c---CCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEec
Q 002841 392 NEEQMCSIEKILG---L---KGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCA 445 (874)
Q Consensus 392 N~~Q~~AV~~il~---~---~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~A 445 (874)
++.|++|+..+.. . .....++|.||||||||+.+..++..+.. ..+..++.++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~~g~~~~~~~ 74 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYE-KKGIRGYFFD 74 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHH-HSCCCCCEEE
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHH-HcCCeEEEEE
Confidence 6789888877652 1 11245899999999999877665554432 2344554443
No 122
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.80 E-value=0.014 Score=66.09 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=26.3
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEec
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCA 445 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~A 445 (874)
.+++.|+||+|||||++.++..+.+ .+.+|++++
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~~--~G~kVllv~ 135 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQK--RGYKVGVVC 135 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHHHHHHH--CCCeEEEEe
Confidence 4689999999999999988877654 356665544
No 123
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.79 E-value=0.0045 Score=67.17 Aligned_cols=34 Identities=12% Similarity=0.060 Sum_probs=24.2
Q ss_pred HHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHH
Q 002841 401 KILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYA 434 (874)
Q Consensus 401 ~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~ 434 (874)
..+.....+.++|.||||||||+++-..+.++..
T Consensus 38 ~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 38 DSLMSSQNKLFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp HHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3333333345789999999999998877776654
No 124
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.61 E-value=0.016 Score=61.95 Aligned_cols=25 Identities=32% Similarity=0.316 Sum_probs=19.0
Q ss_pred CCEEEEcCCCCChhHHHHHHHHHHH
Q 002841 409 PPYLIYGPPGTGKTMTLVEAILQLY 433 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I~~ll 433 (874)
.+++|.||||||||+++...+..+.
T Consensus 68 ~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3689999999999987655444443
No 125
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.35 E-value=0.017 Score=63.08 Aligned_cols=42 Identities=38% Similarity=0.703 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHH
Q 002841 392 NEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLY 433 (874)
Q Consensus 392 N~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll 433 (874)
++...+.+...+.....+.+++.||||||||+++-..+..+.
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 455666666666654445699999999999988765554443
No 126
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.32 E-value=0.021 Score=57.07 Aligned_cols=35 Identities=23% Similarity=0.258 Sum_probs=24.1
Q ss_pred CCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEec
Q 002841 409 PPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCA 445 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~A 445 (874)
.+++|.||||||||+.+..++..+.. .+.+++.+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~--~~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK--RNVSSLIVY 89 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT--TTCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEE
Confidence 46899999999999977655554443 345555443
No 127
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.32 E-value=0.01 Score=60.11 Aligned_cols=36 Identities=19% Similarity=0.213 Sum_probs=23.3
Q ss_pred HHHHHHHhccCC-CCCEEEEcCCCCChhHHHHHHHHH
Q 002841 396 MCSIEKILGLKG-APPYLIYGPPGTGKTMTLVEAILQ 431 (874)
Q Consensus 396 ~~AV~~il~~~~-~~~~lI~GPPGTGKT~Tlve~I~~ 431 (874)
..+++..+..-+ ...++|.||||||||+.+..++..
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHH
Confidence 344555554311 014899999999999987655443
No 128
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.28 E-value=0.015 Score=61.48 Aligned_cols=37 Identities=41% Similarity=0.625 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHhcc-------------CCCCCEEEEcCCCCChhHHHHH
Q 002841 391 LNEEQMCSIEKILGL-------------KGAPPYLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 391 LN~~Q~~AV~~il~~-------------~~~~~~lI~GPPGTGKT~Tlve 427 (874)
-.+++++.+...+.. .....++|.||||||||+++-.
T Consensus 21 G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~ 70 (285)
T 3h4m_A 21 GLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKA 70 (285)
T ss_dssp SCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHH
Confidence 467777777666532 2234589999999999986544
No 129
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.23 E-value=0.017 Score=61.50 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=17.0
Q ss_pred CCEEEEcCCCCChhHHHHHHH
Q 002841 409 PPYLIYGPPGTGKTMTLVEAI 429 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I 429 (874)
.++++.||||||||+++-..+
T Consensus 51 ~~vll~G~~GtGKT~la~~la 71 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLA 71 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 579999999999998765433
No 130
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=95.21 E-value=0.054 Score=65.48 Aligned_cols=122 Identities=13% Similarity=-0.000 Sum_probs=75.6
Q ss_pred CCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHhcccccccccc
Q 002841 390 NLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILGEKAVEVREN 469 (874)
Q Consensus 390 ~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~~~~~~~~~~~ 469 (874)
...+-|..++-.++..+ +...+-|||||.+.+-.+. +....+..++|+|||...|....+-+..... .+ ..
T Consensus 83 ~pt~VQ~~~ip~ll~G~-----Iaea~TGeGKTlaf~LP~~--l~aL~g~~vlVltptreLA~qd~e~~~~l~~-~l-gl 153 (844)
T 1tf5_A 83 FPFKVQLMGGVALHDGN-----IAEMKTGEGKTLTSTLPVY--LNALTGKGVHVVTVNEYLASRDAEQMGKIFE-FL-GL 153 (844)
T ss_dssp CCCHHHHHHHHHHHTTS-----EEECCTTSCHHHHHHHHHH--HHHTTSSCEEEEESSHHHHHHHHHHHHHHHH-HT-TC
T ss_pred CCcHHHHHhhHHHhCCC-----EEEccCCcHHHHHHHHHHH--HHHHcCCCEEEEeCCHHHHHHHHHHHHHHHh-hc-CC
Confidence 56899999999888742 8999999999987665443 2223467899999999999877766554211 00 01
Q ss_pred cEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhhh--hh------hcccCCCCccEEEEEcC
Q 002841 470 EIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASL--IY------AEGVDRGHFSHIFLDEA 541 (874)
Q Consensus 470 ~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~~--l~------~~~~~~~~fd~ViIDEA 541 (874)
.+.-+.. ..+... ......++|+++|....+. +. ...+....+.++|||||
T Consensus 154 ~v~~i~g------g~~~~~---------------r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEa 212 (844)
T 1tf5_A 154 TVGLNLN------SMSKDE---------------KREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEV 212 (844)
T ss_dssp CEEECCT------TSCHHH---------------HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETH
T ss_pred eEEEEeC------CCCHHH---------------HHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECch
Confidence 1111111 111111 1112357899999876631 11 11234467899999999
No 131
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.11 E-value=0.021 Score=57.74 Aligned_cols=41 Identities=27% Similarity=0.302 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHhccCCC-CCEEEEcCCCCChhHHHHHHHHHH
Q 002841 392 NEEQMCSIEKILGLKGA-PPYLIYGPPGTGKTMTLVEAILQL 432 (874)
Q Consensus 392 N~~Q~~AV~~il~~~~~-~~~lI~GPPGTGKT~Tlve~I~~l 432 (874)
.+...+.+...+..... .+++|.||||||||+++...+..+
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 28 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 56666777777654322 358999999999998876655444
No 132
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.02 E-value=0.019 Score=59.62 Aligned_cols=20 Identities=40% Similarity=0.689 Sum_probs=16.1
Q ss_pred CCEEEEcCCCCChhHHHHHH
Q 002841 409 PPYLIYGPPGTGKTMTLVEA 428 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~ 428 (874)
.+++|.||||||||+++...
T Consensus 40 ~~vll~G~~GtGKT~la~~l 59 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAV 59 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 35899999999999875543
No 133
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.97 E-value=0.035 Score=61.13 Aligned_cols=43 Identities=19% Similarity=0.145 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHhc----cCCCCCEEEEcCCCCChhHHHHHHHHHHHH
Q 002841 392 NEEQMCSIEKILG----LKGAPPYLIYGPPGTGKTMTLVEAILQLYA 434 (874)
Q Consensus 392 N~~Q~~AV~~il~----~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~ 434 (874)
.+.+.+.+...+. ......++|.||||||||+++...+.++..
T Consensus 25 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~ 71 (384)
T 2qby_B 25 REDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEE 71 (384)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4555555554443 222345899999999999988766665544
No 134
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.95 E-value=0.016 Score=63.11 Aligned_cols=41 Identities=37% Similarity=0.648 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHH
Q 002841 392 NEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQL 432 (874)
Q Consensus 392 N~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~l 432 (874)
+++..+.+...+.....+.+++.||||||||+++-..+..+
T Consensus 42 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 42 QDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp CCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 44556677777765444569999999999998766555444
No 135
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.90 E-value=0.027 Score=53.96 Aligned_cols=42 Identities=19% Similarity=0.221 Sum_probs=29.3
Q ss_pred CCCCCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHH
Q 002841 387 ISCNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQL 432 (874)
Q Consensus 387 ~~~~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~l 432 (874)
+....|.++..++..+ ....++|.||+|||||+.+..+...+
T Consensus 19 f~~g~n~~~~~~l~~~----~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 19 FLGTENAELVYVLRHK----HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSCCTHHHHHHCCCC----CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred cCcCccHHHHHHHHhc----CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3346777777666655 22468999999999998876555443
No 136
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.86 E-value=0.023 Score=53.88 Aligned_cols=18 Identities=33% Similarity=0.628 Sum_probs=15.4
Q ss_pred CCEEEEcCCCCChhHHHH
Q 002841 409 PPYLIYGPPGTGKTMTLV 426 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlv 426 (874)
.+++|+||||||||+++.
T Consensus 25 ~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp SCEEEESSTTSSHHHHHH
T ss_pred CCEEEECCCCCCHHHHHH
Confidence 579999999999997643
No 137
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.78 E-value=0.032 Score=60.43 Aligned_cols=38 Identities=29% Similarity=0.366 Sum_probs=25.6
Q ss_pred CCCHHHHHHHHHHhc----------c--CCCCCEEEEcCCCCChhHHHHH
Q 002841 390 NLNEEQMCSIEKILG----------L--KGAPPYLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 390 ~LN~~Q~~AV~~il~----------~--~~~~~~lI~GPPGTGKT~Tlve 427 (874)
.-.+.+++++...+. . .....++++||||||||+++-.
T Consensus 21 ~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~a 70 (322)
T 3eie_A 21 AGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKA 70 (322)
T ss_dssp CSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHH
Confidence 346777777776651 1 1112489999999999986543
No 138
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.78 E-value=0.014 Score=55.32 Aligned_cols=17 Identities=18% Similarity=0.344 Sum_probs=14.8
Q ss_pred CCEEEEcCCCCChhHHH
Q 002841 409 PPYLIYGPPGTGKTMTL 425 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tl 425 (874)
.+++|.||||||||+++
T Consensus 28 ~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVA 44 (143)
T ss_dssp SCEEEEEETTCCHHHHH
T ss_pred CcEEEECCCCccHHHHH
Confidence 57999999999999753
No 139
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=94.73 E-value=0.053 Score=65.43 Aligned_cols=123 Identities=12% Similarity=-0.068 Sum_probs=75.7
Q ss_pred CCCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHhccccccccc
Q 002841 389 CNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILGEKAVEVRE 468 (874)
Q Consensus 389 ~~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~~~~~~~~~~ 468 (874)
....+-|..++-.++.. -+...+-|||||.+.+-.+.... ..+..++|+|||..-|....+-+..... .+ .
T Consensus 73 ~~p~~VQ~~~i~~ll~G-----~Iaem~TGsGKTlaf~LP~l~~~--l~g~~vlVltPTreLA~Q~~e~~~~l~~-~l-g 143 (853)
T 2fsf_A 73 MRHFDVQLLGGMVLNER-----CIAEMRTGEGKTLTATLPAYLNA--LTGKGVHVVTVNDYLAQRDAENNRPLFE-FL-G 143 (853)
T ss_dssp CCCCHHHHHHHHHHHSS-----EEEECCTTSCHHHHHHHHHHHHH--TTSSCCEEEESSHHHHHHHHHHHHHHHH-HT-T
T ss_pred CCCChHHHhhcccccCC-----eeeeecCCchHHHHHHHHHHHHH--HcCCcEEEEcCCHHHHHHHHHHHHHHHH-hc-C
Confidence 35678999999888864 28999999999987665554222 2457899999999998877766654211 00 0
Q ss_pred ccEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhh--hhhh------cccCCCCccEEEEEc
Q 002841 469 NEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSAS--LIYA------EGVDRGHFSHIFLDE 540 (874)
Q Consensus 469 ~~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~--~l~~------~~~~~~~fd~ViIDE 540 (874)
..+.-+.. ..+... ......++|+++|....+ .+.. ..+....+.++||||
T Consensus 144 l~v~~i~G------G~~~~~---------------r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDE 202 (853)
T 2fsf_A 144 LTVGINLP------GMPAPA---------------KREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDE 202 (853)
T ss_dssp CCEEECCT------TCCHHH---------------HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESC
T ss_pred CeEEEEeC------CCCHHH---------------HHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECc
Confidence 11111111 111111 111235789999987653 1111 123446789999999
Q ss_pred C
Q 002841 541 A 541 (874)
Q Consensus 541 A 541 (874)
|
T Consensus 203 a 203 (853)
T 2fsf_A 203 V 203 (853)
T ss_dssp H
T ss_pred h
Confidence 9
No 140
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.61 E-value=0.025 Score=61.72 Aligned_cols=43 Identities=28% Similarity=0.523 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHh-ccCCCCCEEEEcCCCCChhHHHHHHHHHHHH
Q 002841 392 NEEQMCSIEKIL-GLKGAPPYLIYGPPGTGKTMTLVEAILQLYA 434 (874)
Q Consensus 392 N~~Q~~AV~~il-~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~ 434 (874)
++...+++...+ .....+.++|.|||||||||++-..+..++.
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~ 62 (354)
T 1sxj_E 19 NEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFG 62 (354)
T ss_dssp CHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSC
T ss_pred CHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcC
Confidence 667777777777 5444456999999999999887655544543
No 141
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.55 E-value=0.037 Score=60.72 Aligned_cols=43 Identities=28% Similarity=0.393 Sum_probs=30.4
Q ss_pred CHHHHHHHHHHhc----cCCCCCEEEEcCCCCChhHHHHHHHHHHHH
Q 002841 392 NEEQMCSIEKILG----LKGAPPYLIYGPPGTGKTMTLVEAILQLYA 434 (874)
Q Consensus 392 N~~Q~~AV~~il~----~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~ 434 (874)
.+.+.+.+...+. ......++|.||||||||+++...+..+..
T Consensus 24 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 24 REAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5667777776662 223357999999999999987766655543
No 142
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.53 E-value=0.023 Score=61.32 Aligned_cols=49 Identities=14% Similarity=0.111 Sum_probs=37.3
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKI 458 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL 458 (874)
.++|.||||||||+.+...+....+..++.+++.+..-++.....++|+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~l 78 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSM 78 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHh
Confidence 4899999999999999998888877545678888777555444444554
No 143
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.52 E-value=0.035 Score=56.93 Aligned_cols=49 Identities=18% Similarity=0.177 Sum_probs=36.8
Q ss_pred CCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHhc
Q 002841 409 PPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILG 460 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~~ 460 (874)
..++|.||||+|||+.+...+..+.. .+.++++.+.... .+.+.+++..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~--~~~~v~~~~~e~~-~~~~~~~~~~ 72 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLK--MGEPGIYVALEEH-PVQVRQNMAQ 72 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHH--TTCCEEEEESSSC-HHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEEccCC-HHHHHHHHHH
Confidence 35899999999999998888777765 3567888776554 4566666653
No 144
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=94.51 E-value=0.054 Score=64.27 Aligned_cols=66 Identities=18% Similarity=0.295 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHh---ccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHhc
Q 002841 392 NEEQMCSIEKIL---GLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILG 460 (874)
Q Consensus 392 N~~Q~~AV~~il---~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~~ 460 (874)
-+.|++.+..+. ... ...++.+|.|||||....-.+...+.. .+.+|+++|+|+.-+..+.+-+..
T Consensus 5 R~~Q~~~~~~v~~~l~~~--~~~~~~apTGtGKT~a~l~p~l~~~~~-~~~kvli~t~T~~l~~Qi~~el~~ 73 (620)
T 4a15_A 5 RQYQVEAIDFLRSSLQKS--YGVALESPTGSGKTIMALKSALQYSSE-RKLKVLYLVRTNSQEEQVIKELRS 73 (620)
T ss_dssp CHHHHHHHHHHHHHHHHS--SEEEEECCTTSCHHHHHHHHHHHHHHH-HTCEEEEEESSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcC--CCEEEECCCCCCHHHHHHHHHHHhhhh-cCCeEEEECCCHHHHHHHHHHHHH
Confidence 577888776543 222 348999999999998765554444432 357999999999999998776654
No 145
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.43 E-value=0.03 Score=59.53 Aligned_cols=36 Identities=28% Similarity=0.535 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHhcc------------CCCCCEEEEcCCCCChhHHHHH
Q 002841 392 NEEQMCSIEKILGL------------KGAPPYLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 392 N~~Q~~AV~~il~~------------~~~~~~lI~GPPGTGKT~Tlve 427 (874)
.+.+++++...+.. .....++|.||||||||+++-.
T Consensus 26 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~ 73 (297)
T 3b9p_A 26 QDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARA 73 (297)
T ss_dssp CHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHH
Confidence 56677777665521 1124689999999999987544
No 146
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.33 E-value=0.057 Score=59.07 Aligned_cols=43 Identities=33% Similarity=0.437 Sum_probs=30.0
Q ss_pred CHHHHHHHHHHhc----cCCCCCEEEEcCCCCChhHHHHHHHHHHHH
Q 002841 392 NEEQMCSIEKILG----LKGAPPYLIYGPPGTGKTMTLVEAILQLYA 434 (874)
Q Consensus 392 N~~Q~~AV~~il~----~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~ 434 (874)
.+.+.+.+...+. ......++|.||||||||+++...+..+..
T Consensus 25 r~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 25 REDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4566677766664 233357999999999999987765555443
No 147
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=94.29 E-value=0.079 Score=64.19 Aligned_cols=122 Identities=12% Similarity=-0.004 Sum_probs=74.2
Q ss_pred CCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHhcccccccccc
Q 002841 390 NLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILGEKAVEVREN 469 (874)
Q Consensus 390 ~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~~~~~~~~~~~ 469 (874)
...+-|..++-.++.. -+...+-|||||.+.+-.+.. ....+..++|+|||.--|....+-+..... .+ ..
T Consensus 111 rP~~VQ~~~ip~Ll~G-----~Iaem~TGeGKTLa~~LP~~l--~aL~g~~v~VvTpTreLA~Qdae~m~~l~~-~l-GL 181 (922)
T 1nkt_A 111 RPFDVQVMGAAALHLG-----NVAEMKTGEGKTLTCVLPAYL--NALAGNGVHIVTVNDYLAKRDSEWMGRVHR-FL-GL 181 (922)
T ss_dssp CCCHHHHHHHHHHHTT-----EEEECCTTSCHHHHTHHHHHH--HHTTTSCEEEEESSHHHHHHHHHHHHHHHH-HT-TC
T ss_pred CCCHHHHHHHHhHhcC-----CEEEecCCCccHHHHHHHHHH--HHHhCCCeEEEeCCHHHHHHHHHHHHHHHh-hc-CC
Confidence 4578899999888764 299999999999876544432 222467899999999988777666554210 00 00
Q ss_pred cEEEecCCCCCCcCCchhhhhhccccchhccCCchhhcccceEEEEechhhh--hhhh------cccCCCCccEEEEEcC
Q 002841 470 EIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSAS--LIYA------EGVDRGHFSHIFLDEA 541 (874)
Q Consensus 470 ~i~Rl~~~~r~~~~v~~~~~~~~~~~~~~~~~~~~~~L~~~~VI~~T~~sa~--~l~~------~~~~~~~fd~ViIDEA 541 (874)
.+.-+.. ..+... ......++|+++|....+ .+.. ..+....+.++|||||
T Consensus 182 sv~~i~g------g~~~~~---------------r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEa 240 (922)
T 1nkt_A 182 QVGVILA------TMTPDE---------------RRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEV 240 (922)
T ss_dssp CEEECCT------TCCHHH---------------HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTH
T ss_pred eEEEEeC------CCCHHH---------------HHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeCh
Confidence 1111111 111111 111235789999987653 1111 1234457999999999
No 148
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.19 E-value=0.04 Score=59.10 Aligned_cols=18 Identities=50% Similarity=0.905 Sum_probs=15.3
Q ss_pred CEEEEcCCCCChhHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve 427 (874)
.++|+||||||||+++-.
T Consensus 51 ~vLL~Gp~GtGKT~la~a 68 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKA 68 (301)
T ss_dssp EEEEECSSSSSHHHHHHH
T ss_pred eEEEECCCCcCHHHHHHH
Confidence 589999999999987544
No 149
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.17 E-value=0.028 Score=58.79 Aligned_cols=20 Identities=45% Similarity=0.735 Sum_probs=16.1
Q ss_pred CEEEEcCCCCChhHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAI 429 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I 429 (874)
.++|.||||||||+++...+
T Consensus 46 ~vll~G~~GtGKT~la~~la 65 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVA 65 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHH
Confidence 48999999999998765433
No 150
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.16 E-value=0.023 Score=64.20 Aligned_cols=46 Identities=26% Similarity=0.351 Sum_probs=28.1
Q ss_pred CcCCCCCCHHHHHHHHHHhc----c---------CCCCCEEEEcCCCCChhHHHHHHHHH
Q 002841 385 VPISCNLNEEQMCSIEKILG----L---------KGAPPYLIYGPPGTGKTMTLVEAILQ 431 (874)
Q Consensus 385 ~~~~~~LN~~Q~~AV~~il~----~---------~~~~~~lI~GPPGTGKT~Tlve~I~~ 431 (874)
.|-+..--++|++.+...+. . ....-+|++||||||||.++- +++.
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAk-AiA~ 237 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLAR-ACAA 237 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHH-HHHH
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHH-HHHH
Confidence 34444556778777765421 1 111128999999999998644 4433
No 151
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=94.15 E-value=0.053 Score=64.86 Aligned_cols=66 Identities=27% Similarity=0.341 Sum_probs=52.7
Q ss_pred CCCHHHHHHHHHHhcc--CCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHhc
Q 002841 390 NLNEEQMCSIEKILGL--KGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILG 460 (874)
Q Consensus 390 ~LN~~Q~~AV~~il~~--~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~~ 460 (874)
.++..|..|+..++.. .+....++.|.+|||||.|++.++.++ +..+||+||+...|..+.+.|..
T Consensus 8 ~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~~~~~~-----~~~~lvv~~~~~~A~ql~~el~~ 75 (664)
T 1c4o_A 8 SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEAL-----GRPALVLAPNKILAAQLAAEFRE 75 (664)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH-----TCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHHHHHHh-----CCCEEEEecCHHHHHHHHHHHHH
Confidence 5788899998876642 222246789999999999999877553 34699999999999999999986
No 152
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.14 E-value=0.045 Score=59.37 Aligned_cols=20 Identities=40% Similarity=0.778 Sum_probs=16.1
Q ss_pred CEEEEcCCCCChhHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAI 429 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I 429 (874)
.++++||||||||+++...+
T Consensus 47 ~iLL~GppGtGKT~la~ala 66 (322)
T 1xwi_A 47 GILLFGPPGTGKSYLAKAVA 66 (322)
T ss_dssp EEEEESSSSSCHHHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHH
Confidence 48999999999998765433
No 153
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.14 E-value=0.036 Score=60.75 Aligned_cols=22 Identities=41% Similarity=0.537 Sum_probs=17.3
Q ss_pred CEEEEcCCCCChhHHHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQ 431 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ 431 (874)
+++|.||||||||+++...+..
T Consensus 72 ~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999876544433
No 154
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.11 E-value=0.037 Score=59.72 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=26.1
Q ss_pred CCEEEEcCCCCChhHHHHHHHHHHH-HhcCCCeEEEec
Q 002841 409 PPYLIYGPPGTGKTMTLVEAILQLY-ATREDARLLVCA 445 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I~~ll-~~~~~~rILv~A 445 (874)
.+++|+||||||||+.+..++..+. . .+.+++.+.
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~--~g~~v~~~~ 188 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEK--KGVSTTLLH 188 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHH--SCCCEEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHh--cCCcEEEEE
Confidence 4689999999999998877666665 4 345666554
No 155
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=94.08 E-value=0.082 Score=64.07 Aligned_cols=64 Identities=16% Similarity=0.014 Sum_probs=49.1
Q ss_pred CCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHhc
Q 002841 390 NLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILG 460 (874)
Q Consensus 390 ~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~~ 460 (874)
...+-|..++-.++..+ +.....|||||.+.+-.+.. ....+..++|+|||..-|....+-+..
T Consensus 79 ~Pt~VQ~~~ip~LlqG~-----IaeakTGeGKTLvf~Lp~~L--~aL~G~qv~VvTPTreLA~Qdae~m~~ 142 (997)
T 2ipc_A 79 RHFDVQLIGGAVLHEGK-----IAEMKTGEGKTLVATLAVAL--NALTGKGVHVVTVNDYLARRDAEWMGP 142 (997)
T ss_dssp CCCHHHHHHHHHHHTTS-----EEECCSTHHHHHHHHHHHHH--HHTTCSCCEEEESSHHHHHHHHHHHHH
T ss_pred CCcHHHHhhcccccCCc-----eeeccCCCchHHHHHHHHHH--HHHhCCCEEEEeCCHHHHHHHHHHHHH
Confidence 55899999998888742 89999999999876655532 112467899999999988887766654
No 156
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.01 E-value=0.047 Score=59.17 Aligned_cols=37 Identities=22% Similarity=0.239 Sum_probs=25.2
Q ss_pred CHHHHHHHHHHhcc-----CCCCCEEEEcCCCCChhHHHHHH
Q 002841 392 NEEQMCSIEKILGL-----KGAPPYLIYGPPGTGKTMTLVEA 428 (874)
Q Consensus 392 N~~Q~~AV~~il~~-----~~~~~~lI~GPPGTGKT~Tlve~ 428 (874)
....++++...+.. ....+++|.||||||||+++...
T Consensus 34 ~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i 75 (338)
T 3pfi_A 34 QESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANII 75 (338)
T ss_dssp CHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHH
Confidence 55566666555532 23357999999999999876543
No 157
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.96 E-value=0.027 Score=63.59 Aligned_cols=18 Identities=61% Similarity=1.108 Sum_probs=15.2
Q ss_pred EEEEcCCCCChhHHHHHH
Q 002841 411 YLIYGPPGTGKTMTLVEA 428 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve~ 428 (874)
+|++||||||||+++-..
T Consensus 209 iLL~GPPGtGKT~lakAi 226 (428)
T 4b4t_K 209 VLLYGPPGTGKTMLVKAV 226 (428)
T ss_dssp EEEESCTTTTHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 899999999999875443
No 158
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=93.95 E-value=0.17 Score=51.79 Aligned_cols=70 Identities=21% Similarity=0.376 Sum_probs=52.4
Q ss_pred eeecCCeEEEEEEEEcCCCccEEEeeecccCCCCceEEEEecCCCCCCCCCCCCccceeeecccceeeCCCCeEEEEEEE
Q 002841 56 SVSVGETAVDSITIKNTTREPVELWSKIYASTPENTFTLSVMKPPSPGSDSGTNRGFVEFFTLEERMIQPGQTLTIWLSC 135 (874)
Q Consensus 56 ~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 135 (874)
.+. |+....+|+|+|+|..|..+.. +.++.. .+..+ .....|.||++.+|.|++
T Consensus 130 ~i~-g~~~~~~f~i~N~G~~pL~I~~-v~~scg--ct~~~----------------------~~~~~i~PGe~~~i~v~~ 183 (220)
T 2qsv_A 130 QLD-GETTKAAIEIRNVGAGPLRLHS-VTTRNP--ALTAV----------------------PDRTEIKPGGSTLLRIAV 183 (220)
T ss_dssp ECT-TSCEEEEEEEEECSSSCEEEEE-EEECST--TEEEE----------------------ESCSEECTTCEEEEEEEE
T ss_pred ccC-CCeEEEEEEEEECCCCCEEEEE-EEeCCC--CEeee----------------------cCCccCCCCCEEEEEEEE
Confidence 677 9999999999999999999887 222111 22222 223459999999999999
Q ss_pred ecCcc-ce----EeEEEEEEc
Q 002841 136 KPKGI-GL----HTTVLQFDV 151 (874)
Q Consensus 136 ~~~~~-g~----~~~~~~f~~ 151 (874)
+++.. |. |..++..-.
T Consensus 184 ~~~~~~g~~~~~~~~~i~v~~ 204 (220)
T 2qsv_A 184 DPQVMKAEGWQSIAADISIIC 204 (220)
T ss_dssp CHHHHHHTTCSEEEEEEEEEE
T ss_pred ecCCCCCcccceeccEEEEEE
Confidence 99998 99 877665443
No 159
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=93.88 E-value=0.027 Score=60.29 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=15.5
Q ss_pred EEEEcCCCCChhHHHHHHHH
Q 002841 411 YLIYGPPGTGKTMTLVEAIL 430 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve~I~ 430 (874)
++++||||||||+++-..+.
T Consensus 39 lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 39 LGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp EEEEECTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68899999999986544333
No 160
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.84 E-value=0.029 Score=62.64 Aligned_cols=17 Identities=53% Similarity=1.054 Sum_probs=14.5
Q ss_pred EEEEcCCCCChhHHHHH
Q 002841 411 YLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve 427 (874)
+|++||||||||.++-.
T Consensus 185 vLL~GPPGTGKTllAkA 201 (405)
T 4b4t_J 185 VILYGPPGTGKTLLARA 201 (405)
T ss_dssp EEEESCSSSSHHHHHHH
T ss_pred eEEeCCCCCCHHHHHHH
Confidence 89999999999986443
No 161
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.82 E-value=0.029 Score=63.42 Aligned_cols=17 Identities=59% Similarity=1.083 Sum_probs=14.7
Q ss_pred EEEEcCCCCChhHHHHH
Q 002841 411 YLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve 427 (874)
+|++||||||||.++-.
T Consensus 218 vLL~GPPGtGKTllAkA 234 (437)
T 4b4t_L 218 VLLYGPPGTGKTLLAKA 234 (437)
T ss_dssp EEEESCTTSSHHHHHHH
T ss_pred EEEECCCCCcHHHHHHH
Confidence 89999999999987544
No 162
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=93.75 E-value=0.046 Score=56.85 Aligned_cols=19 Identities=47% Similarity=0.767 Sum_probs=15.6
Q ss_pred CEEEEcCCCCChhHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEA 428 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~ 428 (874)
.++|.||||||||+++...
T Consensus 47 ~vll~G~~GtGKT~la~~l 65 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAI 65 (257)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHH
Confidence 5899999999999865443
No 163
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=93.75 E-value=0.055 Score=55.52 Aligned_cols=33 Identities=21% Similarity=0.392 Sum_probs=26.0
Q ss_pred EEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEec
Q 002841 411 YLIYGPPGTGKTMTLVEAILQLYATREDARLLVCA 445 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~A 445 (874)
+++.|+||+||||+++..+..+... +.+|+++.
T Consensus 9 I~~~~kgGvGKTt~a~~la~~l~~~--G~~V~v~d 41 (228)
T 2r8r_A 9 VFLGAAPGVGKTYAMLQAAHAQLRQ--GVRVMAGV 41 (228)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHT--TCCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHC--CCCEEEEE
Confidence 6899999999999999888887763 55665443
No 164
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=93.71 E-value=0.041 Score=57.80 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=17.2
Q ss_pred CCEEEEcCCCCChhHHHHHHHH
Q 002841 409 PPYLIYGPPGTGKTMTLVEAIL 430 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I~ 430 (874)
..++|.||||||||+++...+.
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 3689999999999987654433
No 165
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.68 E-value=0.054 Score=58.13 Aligned_cols=38 Identities=26% Similarity=0.359 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHhc-----cCCCCCEEEEcCCCCChhHHHHHHH
Q 002841 392 NEEQMCSIEKILG-----LKGAPPYLIYGPPGTGKTMTLVEAI 429 (874)
Q Consensus 392 N~~Q~~AV~~il~-----~~~~~~~lI~GPPGTGKT~Tlve~I 429 (874)
.....+.+...+. .....+++|.||||||||+++....
T Consensus 17 ~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~ 59 (324)
T 1hqc_A 17 QERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIA 59 (324)
T ss_dssp CHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHH
Confidence 4555555555543 1223578999999999998765443
No 166
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.61 E-value=0.055 Score=59.54 Aligned_cols=21 Identities=43% Similarity=0.763 Sum_probs=16.6
Q ss_pred CEEEEcCCCCChhHHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAIL 430 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~ 430 (874)
.++++||||||||+++...+.
T Consensus 86 ~iLL~GppGtGKT~la~ala~ 106 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVAT 106 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 589999999999987654433
No 167
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.59 E-value=0.034 Score=60.40 Aligned_cols=19 Identities=32% Similarity=0.581 Sum_probs=15.9
Q ss_pred CCEEEEcCCCCChhHHHHH
Q 002841 409 PPYLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve 427 (874)
++++|.||||||||+++-.
T Consensus 46 ~~vLl~G~~GtGKT~la~~ 64 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRA 64 (350)
T ss_dssp CCEEEECCGGGCTTHHHHH
T ss_pred ceEEEECCCCccHHHHHHH
Confidence 5699999999999986543
No 168
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.59 E-value=0.076 Score=61.53 Aligned_cols=41 Identities=24% Similarity=0.349 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHhcc-----------------CCCCCEEEEcCCCCChhHHHHHHHHH
Q 002841 391 LNEEQMCSIEKILGL-----------------KGAPPYLIYGPPGTGKTMTLVEAILQ 431 (874)
Q Consensus 391 LN~~Q~~AV~~il~~-----------------~~~~~~lI~GPPGTGKT~Tlve~I~~ 431 (874)
-++.+.+.+...+.. ....+++|.||||||||+++...+..
T Consensus 43 G~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 43 GNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp SCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 367777777766643 12246899999999999876544433
No 169
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=93.57 E-value=0.059 Score=61.69 Aligned_cols=41 Identities=20% Similarity=0.325 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHH
Q 002841 392 NEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLY 433 (874)
Q Consensus 392 N~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll 433 (874)
.....+.+..++.....+..++.||||||||+++-. +.+.+
T Consensus 185 r~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~-la~~l 225 (468)
T 3pxg_A 185 RSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEG-LAQQI 225 (468)
T ss_dssp CHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHH-HHHHH
T ss_pred cHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHH-HHHHH
Confidence 355666666677544445689999999999986544 44443
No 170
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.54 E-value=0.059 Score=59.28 Aligned_cols=24 Identities=38% Similarity=0.711 Sum_probs=17.9
Q ss_pred CCEEEEcCCCCChhHHHHHHHHHHH
Q 002841 409 PPYLIYGPPGTGKTMTLVEAILQLY 433 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I~~ll 433 (874)
.++++.||||||||+++ .++...+
T Consensus 52 ~~vll~GppGtGKT~la-~~ia~~~ 75 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLA-ETLARLL 75 (363)
T ss_dssp CCEEEECCTTSSHHHHH-HHHHHHT
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHc
Confidence 46999999999999854 4444433
No 171
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.51 E-value=0.069 Score=58.70 Aligned_cols=40 Identities=35% Similarity=0.499 Sum_probs=26.4
Q ss_pred CHHHHHHHHHHhcc----CCCC--CEEEEcCCCCChhHHHHHHHHH
Q 002841 392 NEEQMCSIEKILGL----KGAP--PYLIYGPPGTGKTMTLVEAILQ 431 (874)
Q Consensus 392 N~~Q~~AV~~il~~----~~~~--~~lI~GPPGTGKT~Tlve~I~~ 431 (874)
.+.+.+.+...+.. .... .++|.||||||||+++...+..
T Consensus 22 r~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 22 REQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp CHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 45566665555532 2222 5899999999999987654444
No 172
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=93.48 E-value=0.057 Score=59.40 Aligned_cols=37 Identities=32% Similarity=0.422 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHhc------------cCCCCCEEEEcCCCCChhHHHHHH
Q 002841 392 NEEQMCSIEKILG------------LKGAPPYLIYGPPGTGKTMTLVEA 428 (874)
Q Consensus 392 N~~Q~~AV~~il~------------~~~~~~~lI~GPPGTGKT~Tlve~ 428 (874)
.+.+++.+...+. ......++|.||||||||+++..+
T Consensus 89 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ai 137 (357)
T 3d8b_A 89 VEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCI 137 (357)
T ss_dssp CHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHH
Confidence 5666666666552 112235899999999999876543
No 173
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.43 E-value=0.038 Score=62.00 Aligned_cols=17 Identities=47% Similarity=0.917 Sum_probs=14.6
Q ss_pred EEEEcCCCCChhHHHHH
Q 002841 411 YLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve 427 (874)
+|++||||||||.++-.
T Consensus 219 vLLyGPPGTGKTlLAkA 235 (437)
T 4b4t_I 219 VILYGAPGTGKTLLAKA 235 (437)
T ss_dssp EEEESSTTTTHHHHHHH
T ss_pred CceECCCCchHHHHHHH
Confidence 89999999999986543
No 174
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=93.38 E-value=0.081 Score=55.25 Aligned_cols=22 Identities=36% Similarity=0.561 Sum_probs=17.0
Q ss_pred CCEEEEcCCCCChhHHHHHHHHH
Q 002841 409 PPYLIYGPPGTGKTMTLVEAILQ 431 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I~~ 431 (874)
.+++|.||||||||+++ .++..
T Consensus 30 ~~vll~G~~GtGKt~la-~~i~~ 51 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIA-SRLHY 51 (265)
T ss_dssp SCEEEECCTTSCHHHHH-HHHHH
T ss_pred CCEEEECCCCCcHHHHH-HHHHH
Confidence 57999999999999754 33433
No 175
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=93.06 E-value=0.36 Score=49.21 Aligned_cols=79 Identities=19% Similarity=0.236 Sum_probs=59.0
Q ss_pred eEEec-cccCCCCcceeeecCCeEEEEEEEEcCCCccEEEee-ecccCCCCceEEEEecCCCCCCCCCCCCccceeeecc
Q 002841 41 VQISF-PFPFIDGKPQSVSVGETAVDSITIKNTTREPVELWS-KIYASTPENTFTLSVMKPPSPGSDSGTNRGFVEFFTL 118 (874)
Q Consensus 41 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (874)
|.++. ..+|+ .+..|++...+|++.|+|..|+.+.. ++ | .++.. ..
T Consensus 3 i~~~~~~idFg-----~v~~g~~~~~~~~i~N~g~~pl~i~~~~~----------------p----------~~~~~-~~ 50 (220)
T 2qsv_A 3 LQVSNARLLFP-----ISMPEDEGVVRLVVNNTDESDLQVAVVSL----------------P----------SFVSL-DD 50 (220)
T ss_dssp EEESCSEEECC-----SBCTTCCCEEEEEEEECSSSCEEEEEEEC----------------C----------TTEEC-SC
T ss_pred eEEecCeeEcc-----cccCCCcceEEEEEEeCCCCceEEEeccC----------------C----------CceEe-ee
Confidence 34433 36777 88899999999999999999998876 32 1 11111 23
Q ss_pred cceeeCCCCeEEEEEEEecCc---cceEeEEEEEEc
Q 002841 119 EERMIQPGQTLTIWLSCKPKG---IGLHTTVLQFDV 151 (874)
Q Consensus 119 ~~~~~~~g~~~~~~~~~~~~~---~g~~~~~~~f~~ 151 (874)
+...|.||+.-+|.|+|.++. +|.++.++....
T Consensus 51 ~~~~I~PG~~g~I~vt~~~~~~~~~G~~~~~i~v~~ 86 (220)
T 2qsv_A 51 RAFRLQAREPRELNLSLAVPRNMPPGMKDEPLVLEV 86 (220)
T ss_dssp CEEEECSSSCEEEEEEECCCTTCCSEEEEEEEEEEE
T ss_pred CcceeCCCCceEEEEEEcchhcccCCceeeEEEEEE
Confidence 446799999999999999877 498988777654
No 176
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=93.02 E-value=0.051 Score=58.84 Aligned_cols=33 Identities=18% Similarity=0.186 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHH
Q 002841 393 EEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 393 ~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve 427 (874)
++..+++...+... .++++.||||||||+++-.
T Consensus 33 ~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~ 65 (331)
T 2r44_A 33 KYMINRLLIGICTG--GHILLEGVPGLAKTLSVNT 65 (331)
T ss_dssp HHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHH
Confidence 34445554444332 4699999999999986544
No 177
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.01 E-value=0.085 Score=53.28 Aligned_cols=48 Identities=21% Similarity=0.267 Sum_probs=32.9
Q ss_pred CCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHh
Q 002841 409 PPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKIL 459 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~ 459 (874)
..++|.||||+|||+.+..++..+.. .+.++++.+.... .+.+.+++.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~--~~~~v~~~~~~~~-~~~~~~~~~ 71 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLR--DGDPCIYVTTEES-RDSIIRQAK 71 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHH--HTCCEEEEESSSC-HHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHH--CCCeEEEEEcccC-HHHHHHHHH
Confidence 35899999999999988877766554 2457777765443 344555543
No 178
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.00 E-value=0.081 Score=54.19 Aligned_cols=50 Identities=20% Similarity=0.173 Sum_probs=36.7
Q ss_pred CCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHhc
Q 002841 409 PPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILG 460 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~~ 460 (874)
..++|.|+||+|||+.+.+.+...+.. .+.++++++...+ .+.+.+|+..
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~-~~~~v~~~s~E~~-~~~~~~~~~~ 80 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEE-YGEPGVFVTLEER-ARDLRREMAS 80 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSSC-HHHHHHHHHT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHh-cCCCceeecccCC-HHHHHHHHHH
Confidence 368999999999999988877665443 3567888877654 4566667654
No 179
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.87 E-value=0.043 Score=62.13 Aligned_cols=46 Identities=26% Similarity=0.493 Sum_probs=28.0
Q ss_pred CcCCCCCCHHHHHHHHHHhc-------------cCCCCCEEEEcCCCCChhHHHHHHHHH
Q 002841 385 VPISCNLNEEQMCSIEKILG-------------LKGAPPYLIYGPPGTGKTMTLVEAILQ 431 (874)
Q Consensus 385 ~~~~~~LN~~Q~~AV~~il~-------------~~~~~~~lI~GPPGTGKT~Tlve~I~~ 431 (874)
.|-+..--++|++.++.++. -+...-+|++||||||||.++ .+++.
T Consensus 207 t~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLA-kAiA~ 265 (467)
T 4b4t_H 207 TYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCA-RAVAN 265 (467)
T ss_dssp CCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHH-HHHHH
T ss_pred CHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHH-HHHHh
Confidence 34444445678877765431 111112899999999999764 44443
No 180
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=92.79 E-value=0.1 Score=59.30 Aligned_cols=37 Identities=24% Similarity=0.337 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHhc------------cCCCCCEEEEcCCCCChhHHHHHH
Q 002841 392 NEEQMCSIEKILG------------LKGAPPYLIYGPPGTGKTMTLVEA 428 (874)
Q Consensus 392 N~~Q~~AV~~il~------------~~~~~~~lI~GPPGTGKT~Tlve~ 428 (874)
.+..++++...+. ......++++||||||||+++...
T Consensus 139 ~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~ai 187 (444)
T 2zan_A 139 LEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAV 187 (444)
T ss_dssp CHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHH
Confidence 4566666665541 112235899999999999875443
No 181
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=92.74 E-value=0.094 Score=58.31 Aligned_cols=36 Identities=31% Similarity=0.497 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHhc------------cCCCCCEEEEcCCCCChhHHHHH
Q 002841 392 NEEQMCSIEKILG------------LKGAPPYLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 392 N~~Q~~AV~~il~------------~~~~~~~lI~GPPGTGKT~Tlve 427 (874)
...+++.+...+. ......++|+||||||||+++-.
T Consensus 120 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~a 167 (389)
T 3vfd_A 120 QDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKA 167 (389)
T ss_dssp CHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHH
Confidence 5667777776651 11124689999999999986543
No 182
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=92.73 E-value=0.057 Score=54.42 Aligned_cols=22 Identities=41% Similarity=0.732 Sum_probs=18.2
Q ss_pred CEEEEcCCCCChhHHHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQ 431 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ 431 (874)
.++|.|+||||||+.++..+..
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5799999999999987665544
No 183
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=92.71 E-value=0.088 Score=57.29 Aligned_cols=40 Identities=28% Similarity=0.277 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhcc-----CCCCCEEEEcCCCCChhHHHHHHHHHHH
Q 002841 393 EEQMCSIEKILGL-----KGAPPYLIYGPPGTGKTMTLVEAILQLY 433 (874)
Q Consensus 393 ~~Q~~AV~~il~~-----~~~~~~lI~GPPGTGKT~Tlve~I~~ll 433 (874)
....+.+...+.. ....++++.|||||||||++- ++...+
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~-~ia~~l 75 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAH-IIASEL 75 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHH-HHHHHh
Confidence 3444555544431 222468999999999997654 444443
No 184
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=92.68 E-value=0.071 Score=58.64 Aligned_cols=47 Identities=15% Similarity=0.147 Sum_probs=34.3
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKI 458 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL 458 (874)
.++|.||||+|||+.+..++..+.. .+.++++++.-...-...++|+
T Consensus 63 i~~I~GppGsGKSTLal~la~~~~~--~gg~VlyId~E~s~~~~ra~rl 109 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIAEAQK--MGGVAAFIDAEHALDPVYAKNL 109 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEecccccchHHHHHc
Confidence 5899999999999988887776654 3567777776554444455555
No 185
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=92.56 E-value=0.066 Score=51.48 Aligned_cols=20 Identities=15% Similarity=0.117 Sum_probs=15.7
Q ss_pred CEEEEcCCCCChhHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAI 429 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I 429 (874)
.++|.|||||||||++..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~ 22 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLS 22 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36899999999998765433
No 186
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=92.52 E-value=0.11 Score=57.35 Aligned_cols=20 Identities=35% Similarity=0.630 Sum_probs=16.3
Q ss_pred CCEEEEcCCCCChhHHHHHH
Q 002841 409 PPYLIYGPPGTGKTMTLVEA 428 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~ 428 (874)
.++++.||||||||+++...
T Consensus 73 ~~ill~Gp~GtGKT~la~~l 92 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTL 92 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHH
Confidence 56999999999999765443
No 187
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=92.35 E-value=0.078 Score=58.24 Aligned_cols=48 Identities=21% Similarity=0.279 Sum_probs=33.6
Q ss_pred CCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHH
Q 002841 409 PPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKI 458 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL 458 (874)
..++|.||||||||+.+..++..+.+ .+.++++.+.....-...++++
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~~--~g~~vlyi~~E~~~~~~~a~~l 109 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQA--AGGIAAFIDAEHALDPEYAKKL 109 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEECCCCcCHHHHHHc
Confidence 35899999999999998888877765 4567777766543333333333
No 188
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=92.25 E-value=0.12 Score=55.80 Aligned_cols=49 Identities=14% Similarity=0.160 Sum_probs=38.1
Q ss_pred CCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHhc
Q 002841 409 PPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILG 460 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~~ 460 (874)
..++|.|+||+|||+.+...+..+... +.++|+.+.- ...+.+.+|+..
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a~~--g~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHTT--TCEEEEEESS-SCHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEECC-CCHHHHHHHHHH
Confidence 368999999999999988888777653 4789998876 445667777764
No 189
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=92.19 E-value=0.064 Score=57.20 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=17.7
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLY 433 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll 433 (874)
++++.||||||||+++.. +...+
T Consensus 49 ~~ll~G~~GtGKt~la~~-la~~~ 71 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKT-LAATL 71 (311)
T ss_dssp EEEEESCSSSSHHHHHHH-HHHHH
T ss_pred EEEEECCCCcCHHHHHHH-HHHHH
Confidence 589999999999987654 44444
No 190
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=92.16 E-value=0.12 Score=54.43 Aligned_cols=41 Identities=20% Similarity=0.207 Sum_probs=27.8
Q ss_pred CCCCHHHH-HHHHHHhccC-C-CCCEEEEcCCCCChhHHHHHHH
Q 002841 389 CNLNEEQM-CSIEKILGLK-G-APPYLIYGPPGTGKTMTLVEAI 429 (874)
Q Consensus 389 ~~LN~~Q~-~AV~~il~~~-~-~~~~lI~GPPGTGKT~Tlve~I 429 (874)
...|+.+. .++...+... + ...+++.||||||||+.+..++
T Consensus 82 qg~~~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala 125 (267)
T 1u0j_A 82 NGYDPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIA 125 (267)
T ss_dssp TTCCHHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHH
Confidence 35688774 4466666653 2 1248999999999998765433
No 191
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=92.01 E-value=0.069 Score=51.92 Aligned_cols=20 Identities=15% Similarity=0.142 Sum_probs=15.9
Q ss_pred CEEEEcCCCCChhHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAI 429 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I 429 (874)
.++|.|+|||||||+...+.
T Consensus 5 ~i~l~G~~GsGKST~a~~La 24 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQ 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999998755433
No 192
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=92.00 E-value=0.12 Score=58.96 Aligned_cols=21 Identities=43% Similarity=0.673 Sum_probs=16.6
Q ss_pred CEEEEcCCCCChhHHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAIL 430 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~ 430 (874)
.+++.||||||||+++...+.
T Consensus 65 ~iLl~GppGtGKT~la~ala~ 85 (456)
T 2c9o_A 65 AVLLAGPPGTGKTALALAIAQ 85 (456)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHH
Confidence 489999999999987654433
No 193
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=91.94 E-value=0.12 Score=62.82 Aligned_cols=41 Identities=22% Similarity=0.380 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHH
Q 002841 392 NEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLY 433 (874)
Q Consensus 392 N~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll 433 (874)
.+...+.+..++........++.||||||||+++ +.+++.+
T Consensus 185 ~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la-~~la~~l 225 (758)
T 3pxi_A 185 RSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIA-EGLAQQI 225 (758)
T ss_dssp CHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHH-HHHHHHH
T ss_pred chHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHH-HHHHHHH
Confidence 4566666777775544456899999999999865 4455544
No 194
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=91.84 E-value=0.13 Score=59.02 Aligned_cols=19 Identities=53% Similarity=0.940 Sum_probs=15.5
Q ss_pred CCEEEEcCCCCChhHHHHH
Q 002841 409 PPYLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve 427 (874)
..++|+||||||||+++-.
T Consensus 239 ~~vLL~GppGtGKT~lAra 257 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIARA 257 (489)
T ss_dssp CEEEEECSTTSSHHHHHHH
T ss_pred CcEEEECcCCCCHHHHHHH
Confidence 3589999999999986543
No 195
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=91.77 E-value=0.075 Score=56.23 Aligned_cols=17 Identities=47% Similarity=0.829 Sum_probs=14.6
Q ss_pred EEEEcCCCCChhHHHHH
Q 002841 411 YLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve 427 (874)
+++.||||||||+++-.
T Consensus 47 vlL~Gp~GtGKTtLaka 63 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKA 63 (274)
T ss_dssp EEEESSTTSCHHHHHHH
T ss_pred EEEECCCCCcHHHHHHH
Confidence 89999999999986543
No 196
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=91.74 E-value=0.14 Score=55.13 Aligned_cols=34 Identities=24% Similarity=0.313 Sum_probs=25.5
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEec
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCA 445 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~A 445 (874)
.++|.||+|+||||++..++..+.. .+.+|++.+
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~~l~~--~g~kV~lv~ 139 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKMFVD--EGKSVVLAA 139 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEE
T ss_pred EEEEEcCCCChHHHHHHHHHHHHHh--cCCEEEEEc
Confidence 4689999999999999887766544 355666654
No 197
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.67 E-value=0.15 Score=57.47 Aligned_cols=51 Identities=18% Similarity=0.340 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEE
Q 002841 390 NLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLV 443 (874)
Q Consensus 390 ~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv 443 (874)
.+.+.+..++..++.. ....++|.||.|+||||++..++. ++. ....+|++
T Consensus 150 g~~~~~~~~L~~l~~~-~ggii~I~GpnGSGKTTlL~allg-~l~-~~~g~I~~ 200 (418)
T 1p9r_A 150 GMTAHNHDNFRRLIKR-PHGIILVTGPTGSGKSTTLYAGLQ-ELN-SSERNILT 200 (418)
T ss_dssp CCCHHHHHHHHHHHTS-SSEEEEEECSTTSCHHHHHHHHHH-HHC-CTTSCEEE
T ss_pred CCCHHHHHHHHHHHHh-cCCeEEEECCCCCCHHHHHHHHHh-hcC-CCCCEEEE
Confidence 4678888888888653 224689999999999999876544 332 12345554
No 198
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=91.63 E-value=0.11 Score=57.11 Aligned_cols=38 Identities=24% Similarity=0.288 Sum_probs=30.0
Q ss_pred CCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCH
Q 002841 409 PPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSN 448 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSN 448 (874)
..++|.||||+|||+.+...+..+.+ .+.++++++...
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~~--~g~~vlyid~E~ 101 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEH 101 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEESSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeCCC
Confidence 35899999999999999888887765 345777777644
No 199
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=91.56 E-value=0.1 Score=51.13 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=17.1
Q ss_pred CEEEEcCCCCChhHHHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQ 431 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ 431 (874)
.++|.|||||||||.+..+...
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999876554443
No 200
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=91.54 E-value=0.093 Score=50.85 Aligned_cols=20 Identities=40% Similarity=0.466 Sum_probs=15.8
Q ss_pred CEEEEcCCCCChhHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAI 429 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I 429 (874)
.++|.|||||||||.+..+.
T Consensus 4 ~I~i~G~~GsGKST~a~~L~ 23 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFI 23 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHH
Confidence 36899999999998765433
No 201
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=91.49 E-value=0.096 Score=51.29 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=16.9
Q ss_pred CEEEEcCCCCChhHHHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQ 431 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ 431 (874)
.++|.|+|||||||.+..+...
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3689999999999876554443
No 202
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=91.45 E-value=0.086 Score=54.65 Aligned_cols=17 Identities=47% Similarity=0.774 Sum_probs=14.7
Q ss_pred EEEEcCCCCChhHHHHH
Q 002841 411 YLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve 427 (874)
++|.||||||||+++..
T Consensus 52 ~ll~G~~G~GKTtl~~~ 68 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARA 68 (254)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 79999999999987543
No 203
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=91.40 E-value=0.11 Score=50.87 Aligned_cols=21 Identities=24% Similarity=0.203 Sum_probs=16.6
Q ss_pred CEEEEcCCCCChhHHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAIL 430 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~ 430 (874)
.++|.|||||||||+...++.
T Consensus 7 ~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999987655443
No 204
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.37 E-value=0.25 Score=48.55 Aligned_cols=30 Identities=17% Similarity=0.280 Sum_probs=19.4
Q ss_pred EEEEcCCCCChhHHHHHHHHHHHHhcCCCeEE
Q 002841 411 YLIYGPPGTGKTMTLVEAILQLYATREDARLL 442 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rIL 442 (874)
++|.|||||||||.+..+. +.+.. .+..++
T Consensus 3 I~l~G~~GsGKsT~~~~L~-~~l~~-~g~~v~ 32 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLA-QYLEK-RGKKVI 32 (197)
T ss_dssp EEEECSTTSSHHHHHHHHH-HHHHH-CCC-EE
T ss_pred EEEECCCCCCHHHHHHHHH-HHHHH-CCCeEE
Confidence 6899999999998765544 44432 234443
No 205
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=91.36 E-value=0.12 Score=50.37 Aligned_cols=21 Identities=43% Similarity=0.599 Sum_probs=16.7
Q ss_pred CCEEEEcCCCCChhHHHHHHH
Q 002841 409 PPYLIYGPPGTGKTMTLVEAI 429 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I 429 (874)
..++|.|+|||||||.+..+.
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHH
Confidence 458999999999998765433
No 206
>1w36_C RECC, exodeoxyribonuclease V gamma chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.25 PDB: 3k70_C*
Probab=91.25 E-value=0.087 Score=66.83 Aligned_cols=81 Identities=14% Similarity=0.082 Sum_probs=55.5
Q ss_pred CCCeEECccccCCCceeeEEEEEeccCCCcCCcccccccccc--------------C-CCCCceEeccccccccEEEEEc
Q 002841 725 MPDIKVGSVEQFQGQERQVIIVSTVRSTIKHNDFDRKHCLGF--------------L-SNPRRFNVAVTRAISLLIIIGN 789 (874)
Q Consensus 725 ~~~v~V~TVd~fQG~E~dvVIiS~VRs~~~~~~~d~~~~lGF--------------l-~d~rrlNVAiTRAK~~LiIvGn 789 (874)
...|.+.|+|..+|.|+++|++..+-...-... ....+| + .+.+.+||||||||..|+|...
T Consensus 656 ~~~V~l~Tlh~aKgLef~vVfllGlnEG~fP~~---~~~~~~dll~~~l~~~dr~~~eEERrLfYvAltrA~~~L~LSy~ 732 (1122)
T 1w36_C 656 AGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQ---LAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYI 732 (1122)
T ss_dssp SSSCEEECCCTTCCCCEEEEEEECCBTTTSSCC---CCCCSSCHHHHSCCTTCCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCeEEEeccccccCCCcCEEEEeCCCcccCCCC---CCCCcHHHhhcccCCCchhhhHHHHHHHHHHHHhhcCeEEEEEe
Confidence 356999999999999999999987654311000 001111 1 1234599999999999999875
Q ss_pred ccc------ccCChHHHHHHHHHHh
Q 002841 790 PHI------VSKDPYWHQLLWYCSD 808 (874)
Q Consensus 790 ~~~------L~~~~~w~~ll~~~~~ 808 (874)
... ...+.+..++..++..
T Consensus 733 ~~~~~~g~~~~PSrfL~eL~~~l~~ 757 (1122)
T 1w36_C 733 GRSIQDNSERFPSVLVQELIDYIGQ 757 (1122)
T ss_dssp CBCSSSCCBCCBCHHHHHHHHHHHT
T ss_pred CCcCCCCCcCCCCHHHHHHHHHHHH
Confidence 432 2347888888888864
No 207
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=91.17 E-value=0.26 Score=60.74 Aligned_cols=54 Identities=19% Similarity=0.279 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhc-----CCCeEEEecC
Q 002841 393 EEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATR-----EDARLLVCAP 446 (874)
Q Consensus 393 ~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~-----~~~rILv~Ap 446 (874)
++..+.+..++........++.||||||||+++-..+..+.... .+.+++.+..
T Consensus 176 ~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 234 (854)
T 1qvr_A 176 DEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQM 234 (854)
T ss_dssp HHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC
T ss_pred HHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeeh
Confidence 45555566666544445679999999999987655554443311 2456666544
No 208
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=91.14 E-value=0.13 Score=56.91 Aligned_cols=48 Identities=17% Similarity=0.173 Sum_probs=34.9
Q ss_pred CCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHH
Q 002841 409 PPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKI 458 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL 458 (874)
..++|.||||+|||+.+..++..+.+ .+.++++++.-.......++++
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~~--~g~~vlyi~~E~s~~~~~a~~~ 122 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQK--AGGTCAFIDAEHALDPVYARAL 122 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHHHHHHT
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHHH--CCCeEEEEECCCChhHHHHHHc
Confidence 35899999999999999888887765 3567888877654444344443
No 209
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=91.04 E-value=0.18 Score=54.04 Aligned_cols=36 Identities=19% Similarity=0.341 Sum_probs=26.9
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecC
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAP 446 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~Ap 446 (874)
.++|.||+|+||||++..++..+.. ..+.+|++++.
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~l~~-~~G~~V~lv~~ 142 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAISML-EKHKKIAFITT 142 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH-TTCCCEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-hcCCEEEEEec
Confidence 5789999999999999877765543 24567777653
No 210
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=91.01 E-value=0.16 Score=54.42 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=17.0
Q ss_pred CCEEEEcCCCCChhHHHHHHHHH
Q 002841 409 PPYLIYGPPGTGKTMTLVEAILQ 431 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I~~ 431 (874)
.+++|.||||||||+++ .+|..
T Consensus 26 ~~vLi~Ge~GtGKt~lA-r~i~~ 47 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVA-RALHA 47 (304)
T ss_dssp SCEEEESCTTSCHHHHH-HHHHH
T ss_pred CcEEEECCCCchHHHHH-HHHHH
Confidence 57999999999999764 33433
No 211
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=91.00 E-value=0.4 Score=57.25 Aligned_cols=66 Identities=27% Similarity=0.354 Sum_probs=51.9
Q ss_pred CCCHHHHHHHHHHhcc--CCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHhc
Q 002841 390 NLNEEQMCSIEKILGL--KGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILG 460 (874)
Q Consensus 390 ~LN~~Q~~AV~~il~~--~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~~ 460 (874)
..+..|..|+..++.. .+....++.|.+|||||.+++..+.+. +..+||+|++...|..+.+-|..
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~~~~~~-----~~~~lvv~~~~~~A~~l~~el~~ 79 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEV-----NKPTLVIAHNKTLAGQLYSEFKE 79 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH-----CCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHHHHHHh-----CCCEEEEECCHHHHHHHHHHHHH
Confidence 4578898888876532 222246789999999999998877553 34799999999999999999986
No 212
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=90.99 E-value=0.18 Score=61.14 Aligned_cols=41 Identities=20% Similarity=0.255 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHH
Q 002841 392 NEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQL 432 (874)
Q Consensus 392 N~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~l 432 (874)
.+.+.+.+..++......+.+|.||||||||+++-..+..+
T Consensus 191 r~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 191 REKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp CHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 45566667777765444568999999999998765544444
No 213
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=90.97 E-value=0.23 Score=52.39 Aligned_cols=49 Identities=12% Similarity=0.219 Sum_probs=33.2
Q ss_pred CCEEEEcCCCCChhHHHHHHHHHHHHhc---------CCCeEEEecCCHHHHHHHHHHHh
Q 002841 409 PPYLIYGPPGTGKTMTLVEAILQLYATR---------EDARLLVCAPSNSAADHLLEKIL 459 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I~~ll~~~---------~~~rILv~ApSNsAaD~l~~rL~ 459 (874)
..++|.||||+||||.+...+..+. .+ ...++++++.-... +.+..|+.
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~-~g~~~~g~~~~~~~~v~~~~~e~~~-~~~~~r~~ 88 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIA-GGPDLLEVGELPTGPVIYLPAEDPP-TAIHHRLH 88 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH-TCCCTTCCCCCCCCCEEEEESSSCH-HHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHh-cCCCcCCCccCCCccEEEEECCCCH-HHHHHHHH
Confidence 3589999999999998887776443 22 13577777765543 55555554
No 214
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=90.97 E-value=0.12 Score=50.80 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=16.7
Q ss_pred CEEEEcCCCCChhHHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAIL 430 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~ 430 (874)
.++|.|+|||||||.+..+..
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999987655443
No 215
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=90.93 E-value=0.1 Score=49.93 Aligned_cols=19 Identities=37% Similarity=0.417 Sum_probs=15.3
Q ss_pred CEEEEcCCCCChhHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEA 428 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~ 428 (874)
.++|.|||||||||.+..+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999865543
No 216
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=90.93 E-value=0.13 Score=52.13 Aligned_cols=17 Identities=35% Similarity=0.733 Sum_probs=13.9
Q ss_pred EEEEcCCCCChhHHHHH
Q 002841 411 YLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve 427 (874)
++|.||||+||+|....
T Consensus 3 Iil~GpPGsGKgTqa~~ 19 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKR 19 (206)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 58899999999976443
No 217
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=90.91 E-value=0.2 Score=48.98 Aligned_cols=39 Identities=15% Similarity=0.115 Sum_probs=26.9
Q ss_pred CCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHH
Q 002841 409 PPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNS 449 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNs 449 (874)
+.+.|.|++||||||++..++..+-. .+.+|.++.....
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~--~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR--EGWRVGTVKHHGH 43 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEECCC-
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh--cCCeeeEEEeCCC
Confidence 34789999999999887766655443 3567766665443
No 218
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.83 E-value=0.13 Score=51.74 Aligned_cols=19 Identities=32% Similarity=0.574 Sum_probs=15.1
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 002841 411 YLIYGPPGTGKTMTLVEAI 429 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve~I 429 (874)
++|.|||||||||.+..+.
T Consensus 3 I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5899999999998755433
No 219
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=90.79 E-value=0.15 Score=49.93 Aligned_cols=20 Identities=25% Similarity=0.381 Sum_probs=15.9
Q ss_pred CEEEEcCCCCChhHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAI 429 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I 429 (874)
.++|.|+|||||||+...+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 47899999999998755433
No 220
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.76 E-value=0.24 Score=54.35 Aligned_cols=35 Identities=29% Similarity=0.344 Sum_probs=27.3
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecC
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAP 446 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~Ap 446 (874)
.+.|.|+||+||||++...+..+.. .+.+|++++.
T Consensus 81 ~I~i~G~~G~GKSTl~~~L~~~l~~--~g~kV~vi~~ 115 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIEALGMHLIE--RGHRVAVLAV 115 (355)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh--CCCceEEEec
Confidence 4789999999999998887776654 4567777654
No 221
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=90.75 E-value=0.2 Score=49.14 Aligned_cols=33 Identities=30% Similarity=0.294 Sum_probs=22.5
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEe
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLYATREDARLLVC 444 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ 444 (874)
.++|.|+||+||||.+..+...+-. .+.++.++
T Consensus 15 ~i~l~G~~GsGKsT~~~~L~~~l~~--~~~~~~~~ 47 (186)
T 2yvu_A 15 VVWLTGLPGSGKTTIATRLADLLQK--EGYRVEVL 47 (186)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh--cCCeEEEe
Confidence 5789999999999977665554432 34455444
No 222
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=90.68 E-value=0.15 Score=49.60 Aligned_cols=20 Identities=20% Similarity=0.222 Sum_probs=15.8
Q ss_pred CEEEEcCCCCChhHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAI 429 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I 429 (874)
.++|.|||||||||+...++
T Consensus 6 ~i~i~G~~GsGKsTla~~La 25 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALA 25 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 47899999999998655443
No 223
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=90.58 E-value=0.14 Score=50.97 Aligned_cols=22 Identities=18% Similarity=0.024 Sum_probs=17.0
Q ss_pred CEEEEcCCCCChhHHHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQ 431 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ 431 (874)
.++|.|+|||||||.+..+...
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999876554443
No 224
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=90.55 E-value=0.13 Score=49.63 Aligned_cols=18 Identities=28% Similarity=0.491 Sum_probs=15.1
Q ss_pred CEEEEcCCCCChhHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve 427 (874)
.+.|.|||||||||++..
T Consensus 6 ~i~l~G~~GsGKSTl~~~ 23 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQ 23 (173)
T ss_dssp CEEEECCTTSCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 589999999999986543
No 225
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=90.52 E-value=0.14 Score=50.95 Aligned_cols=21 Identities=24% Similarity=0.138 Sum_probs=16.8
Q ss_pred CEEEEcCCCCChhHHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAIL 430 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~ 430 (874)
.++|.|||||||||++..++.
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 579999999999987655443
No 226
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=90.50 E-value=0.15 Score=49.90 Aligned_cols=20 Identities=30% Similarity=0.605 Sum_probs=15.9
Q ss_pred CEEEEcCCCCChhHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAI 429 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I 429 (874)
.++|.|||||||||....+.
T Consensus 6 ~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999998765443
No 227
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=90.47 E-value=0.16 Score=57.37 Aligned_cols=35 Identities=23% Similarity=0.245 Sum_probs=27.5
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecC
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAP 446 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~Ap 446 (874)
.++|.|+||+||||++..++..+... +.+|++++.
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l~~~--G~kVllv~~ 135 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQKR--GLKPALIAA 135 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHHHH--HCCEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEec
Confidence 57899999999999999888777653 466666653
No 228
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=90.44 E-value=0.16 Score=50.85 Aligned_cols=34 Identities=21% Similarity=0.297 Sum_probs=25.3
Q ss_pred CCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCC
Q 002841 409 PPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPS 447 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApS 447 (874)
..++|.||||+|||+.+...+. . .+.++++++..
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~---~--~~~~v~~i~~~ 54 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL---L--SGKKVAYVDTE 54 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH---H--HCSEEEEEESS
T ss_pred EEEEEECCCCCCHHHHHHHHHH---H--cCCcEEEEECC
Confidence 3589999999999998877665 2 34677766654
No 229
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=90.43 E-value=0.15 Score=52.08 Aligned_cols=18 Identities=28% Similarity=0.541 Sum_probs=14.5
Q ss_pred CEEEEcCCCCChhHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve 427 (874)
.++|.||||+||||....
T Consensus 31 iI~llGpPGsGKgTqa~~ 48 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEK 48 (217)
T ss_dssp EEEEECCTTCCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467899999999986543
No 230
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=90.39 E-value=3.8 Score=37.48 Aligned_cols=82 Identities=17% Similarity=0.220 Sum_probs=55.0
Q ss_pred cCCeEEEEEEEEcCCCccEEEeeecccCCCCceEEEEecCCCCCC----CCCCCCccceeeecccceeeCCCCeEEEEEE
Q 002841 59 VGETAVDSITIKNTTREPVELWSKIYASTPENTFTLSVMKPPSPG----SDSGTNRGFVEFFTLEERMIQPGQTLTIWLS 134 (874)
Q Consensus 59 ~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 134 (874)
.|++..++++|.|.++++++|.. - ....|.|.+.+.-.+. ++. ..|.. -+..+.|+||+++++.++
T Consensus 16 ~g~~v~~~ltv~N~s~~~v~l~f-~----Sgq~~Df~v~d~~G~~VwrwS~~---~~FtQ--a~~~~tl~pGE~~~f~~~ 85 (120)
T 3isy_A 16 EPEQIKFNMSLKNQSERAIEFQF-S----TGQKFELVVYDSEHKERYRYSKE---KMFTQ--AFQNLTLESGETYDFSDV 85 (120)
T ss_dssp CSSCEEEEEEEEECSSSCEEEEE-S----SSCCEEEEEECTTCCEEEETTTT---CCCCC--CCEEEEECTTCEEEEEEE
T ss_pred CCCeEEEEEEEEcCCCCcEEEEe-C----CCCEEEEEEECCCCCEEEEcccc---chhhh--hhceEEECCCCEEEEEEE
Confidence 67788999999999999999986 1 1234566555332100 111 11221 245688999999999999
Q ss_pred Eec-CccceEeEEEEEE
Q 002841 135 CKP-KGIGLHTTVLQFD 150 (874)
Q Consensus 135 ~~~-~~~g~~~~~~~f~ 150 (874)
... -..|.|.....|-
T Consensus 86 w~~~~~pG~Ytl~a~l~ 102 (120)
T 3isy_A 86 WKEVPEPGTYEVKVTFK 102 (120)
T ss_dssp ESSCCCSEEEEEEEEEC
T ss_pred eCCCCCCccEEEEEEEE
Confidence 994 3469998777764
No 231
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=90.35 E-value=0.12 Score=54.34 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=16.3
Q ss_pred EEEEcCCCCChhHHHHHHHHHH
Q 002841 411 YLIYGPPGTGKTMTLVEAILQL 432 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve~I~~l 432 (874)
++|.||||||||+++.. +...
T Consensus 76 vll~Gp~GtGKTtl~~~-i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARA-VAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHH-HHHH
T ss_pred EEEECCCcChHHHHHHH-HHHH
Confidence 79999999999987643 4433
No 232
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=90.34 E-value=0.14 Score=59.03 Aligned_cols=18 Identities=28% Similarity=0.659 Sum_probs=15.3
Q ss_pred CCEEEEcCCCCChhHHHH
Q 002841 409 PPYLIYGPPGTGKTMTLV 426 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlv 426 (874)
.++++.||||||||+.+-
T Consensus 42 ~~VLL~GpPGtGKT~LAr 59 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIAR 59 (500)
T ss_dssp CEEEEECCSSSSHHHHHH
T ss_pred CeeEeecCchHHHHHHHH
Confidence 569999999999997643
No 233
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=90.32 E-value=0.23 Score=53.76 Aligned_cols=34 Identities=26% Similarity=0.390 Sum_probs=26.3
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEec
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCA 445 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~A 445 (874)
.+.|.||+|+|||||+..++..+.. .+.+|++..
T Consensus 107 vI~ivG~~G~GKTT~~~~LA~~l~~--~g~kVllid 140 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLAKMANYYAE--LGYKVLIAA 140 (320)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHH--TTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEe
Confidence 4788999999999999887766554 356777664
No 234
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.29 E-value=0.12 Score=51.93 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=14.6
Q ss_pred EEEEcCCCCChhHHHHHH
Q 002841 411 YLIYGPPGTGKTMTLVEA 428 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve~ 428 (874)
++|.|||||||||.+..+
T Consensus 3 I~l~G~~GsGKsT~a~~L 20 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERI 20 (216)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 589999999999875443
No 235
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=90.27 E-value=0.28 Score=52.03 Aligned_cols=49 Identities=14% Similarity=0.201 Sum_probs=33.2
Q ss_pred CCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHh
Q 002841 409 PPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKIL 459 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~ 459 (874)
..++|.||||+||||.+..++..+... .+.+|++.+..... ..+..|+.
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~-~G~~v~~~~~e~~~-~~~~~r~~ 84 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTA-MGKKVGLAMLEESV-EETAEDLI 84 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT-SCCCEEEEESSSCH-HHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHH-cCCeEEEEeCcCCH-HHHHHHHH
Confidence 468999999999999887766555432 34578877664432 34555554
No 236
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=90.25 E-value=0.16 Score=49.78 Aligned_cols=20 Identities=25% Similarity=0.524 Sum_probs=15.8
Q ss_pred CEEEEcCCCCChhHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAI 429 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I 429 (874)
.++|.|+|||||||....+.
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36899999999998765433
No 237
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=90.25 E-value=0.16 Score=50.63 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=16.5
Q ss_pred CCEEEEcCCCCChhHHHHHHH
Q 002841 409 PPYLIYGPPGTGKTMTLVEAI 429 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I 429 (874)
..++|.||+|+||||++..+.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~ 50 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVA 50 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 357899999999998765443
No 238
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=90.20 E-value=0.28 Score=49.96 Aligned_cols=40 Identities=13% Similarity=0.082 Sum_probs=26.6
Q ss_pred CCEEEEcCCCCChhHHHHHHHHHHHHhc----CCCeEEEecCCH
Q 002841 409 PPYLIYGPPGTGKTMTLVEAILQLYATR----EDARLLVCAPSN 448 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I~~ll~~~----~~~rILv~ApSN 448 (874)
..++|.||||+|||+++..++...+... .+..++.++...
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 3589999999999999877666533211 145666555443
No 239
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=90.15 E-value=0.17 Score=50.39 Aligned_cols=20 Identities=20% Similarity=0.330 Sum_probs=16.2
Q ss_pred CEEEEcCCCCChhHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAI 429 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I 429 (874)
.++|.|+||+||||.+..+.
T Consensus 20 ~I~l~G~~GsGKSTla~~L~ 39 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIA 39 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999998755433
No 240
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=90.09 E-value=0.18 Score=48.57 Aligned_cols=20 Identities=30% Similarity=0.413 Sum_probs=16.0
Q ss_pred CEEEEcCCCCChhHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAI 429 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I 429 (874)
.++|.|+|||||||+...+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La 23 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELA 23 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 47999999999998755433
No 241
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=90.09 E-value=0.17 Score=50.43 Aligned_cols=20 Identities=40% Similarity=0.722 Sum_probs=15.7
Q ss_pred CEEEEcCCCCChhHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAI 429 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I 429 (874)
.++|.|||||||||....+.
T Consensus 22 ~I~l~G~~GsGKST~a~~La 41 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLA 41 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999998755433
No 242
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=89.95 E-value=0.14 Score=50.36 Aligned_cols=18 Identities=33% Similarity=0.565 Sum_probs=15.2
Q ss_pred CEEEEcCCCCChhHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve 427 (874)
.++|.||||+||||++..
T Consensus 11 ~i~l~G~~GsGKSTl~~~ 28 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEA 28 (191)
T ss_dssp EEEEEECTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999987543
No 243
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=89.94 E-value=0.3 Score=56.22 Aligned_cols=43 Identities=21% Similarity=0.221 Sum_probs=30.8
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecC---CHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAP---SNSAADHL 454 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~Ap---SNsAaD~l 454 (874)
.++|.|+||+||||++..++..+.+ .+.++++++. ...|.+.+
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~--~G~kVllVd~D~~r~aa~~qL 148 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQR--KGWKTCLICADTFRAGAFDQL 148 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEEECCSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEeccccchhHHHHH
Confidence 3678899999999999888877654 3567766654 44455544
No 244
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=89.92 E-value=0.2 Score=55.45 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=19.5
Q ss_pred CCEEE--EcCCCCChhHHHHHHHHHHH
Q 002841 409 PPYLI--YGPPGTGKTMTLVEAILQLY 433 (874)
Q Consensus 409 ~~~lI--~GPPGTGKT~Tlve~I~~ll 433 (874)
..++| .||||||||+++...+..+.
T Consensus 51 ~~~li~i~G~~G~GKT~L~~~~~~~~~ 77 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAKFTVKRVS 77 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHHHHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHHHHHHHHH
Confidence 35788 99999999998877665543
No 245
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=89.89 E-value=0.38 Score=53.27 Aligned_cols=63 Identities=19% Similarity=0.212 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeE--EEecCCHHHHHHHH
Q 002841 393 EEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARL--LVCAPSNSAADHLL 455 (874)
Q Consensus 393 ~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rI--Lv~ApSNsAaD~l~ 455 (874)
.-=.+||...+.-....-..|+||+|+|||+.+..++.++.+.+++..+ +.+--...-+..+.
T Consensus 159 ~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~Ev~~~~ 223 (422)
T 3ice_A 159 DLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQ 223 (422)
T ss_dssp HHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHHHH
T ss_pred cccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChHHHHHHH
Confidence 3445677666542222347999999999999988877777665555443 33344444444443
No 246
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=89.89 E-value=0.39 Score=51.34 Aligned_cols=35 Identities=20% Similarity=0.204 Sum_probs=26.6
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecC
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAP 446 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~Ap 446 (874)
.+++.|++|+||||++..++..+.. .+.+|++...
T Consensus 100 vi~i~G~~G~GKTT~~~~la~~~~~--~g~~v~l~~~ 134 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAYFYKK--KGFKVGLVGA 134 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHHHHHH--TTCCEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEec
Confidence 4678899999999999887766654 3567776654
No 247
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=89.88 E-value=0.14 Score=54.45 Aligned_cols=20 Identities=35% Similarity=0.615 Sum_probs=16.1
Q ss_pred CEEEEcCCCCChhHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAI 429 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I 429 (874)
.++|.|||||||||++..++
T Consensus 35 livl~G~sGsGKSTla~~L~ 54 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIF 54 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999998765543
No 248
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=89.87 E-value=0.3 Score=55.51 Aligned_cols=49 Identities=16% Similarity=0.261 Sum_probs=37.6
Q ss_pred CCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHh
Q 002841 409 PPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKIL 459 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~ 459 (874)
..++|.|+||+|||+.+...+..+... .+.+|++.+.-.++ ..+..|+.
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~s~-~~l~~r~~ 252 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEMSA-QQLVMRML 252 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSSCH-HHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCCCH-HHHHHHHH
Confidence 368999999999999998888777653 35689998876544 56667764
No 249
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=89.86 E-value=0.17 Score=49.84 Aligned_cols=21 Identities=24% Similarity=0.456 Sum_probs=16.5
Q ss_pred CCEEEEcCCCCChhHHHHHHH
Q 002841 409 PPYLIYGPPGTGKTMTLVEAI 429 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I 429 (874)
..++|.|+|||||||+...+.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 357899999999998765443
No 250
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=89.79 E-value=0.24 Score=53.42 Aligned_cols=35 Identities=26% Similarity=0.352 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHH
Q 002841 393 EEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQ 431 (874)
Q Consensus 393 ~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ 431 (874)
+.+.+.+.. +.. +.++|.||+|+|||+.+.+.+..
T Consensus 19 ~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 19 EKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp HHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHh
Confidence 556677777 765 46899999999999988766554
No 251
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=89.77 E-value=0.18 Score=50.10 Aligned_cols=19 Identities=47% Similarity=0.816 Sum_probs=15.9
Q ss_pred CCEEEEcCCCCChhHHHHH
Q 002841 409 PPYLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve 427 (874)
.|++|.||+|+||||.+-.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~ 20 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKK 20 (186)
T ss_dssp CCEEEECCTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 4689999999999986543
No 252
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=89.76 E-value=0.18 Score=51.14 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=16.1
Q ss_pred CEEEEcCCCCChhHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAI 429 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I 429 (874)
.++|.|||||||||....++
T Consensus 7 ~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 7 KVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp CEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999998755443
No 253
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=89.72 E-value=0.18 Score=52.61 Aligned_cols=21 Identities=38% Similarity=0.543 Sum_probs=16.4
Q ss_pred CEEEEcCCCCChhHHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAIL 430 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~ 430 (874)
.++|.|||||||||....++.
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 368999999999987655443
No 254
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=89.66 E-value=0.18 Score=49.32 Aligned_cols=19 Identities=26% Similarity=0.522 Sum_probs=15.3
Q ss_pred CEEEEcCCCCChhHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEA 428 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~ 428 (874)
.++|.|+|||||||+...+
T Consensus 8 ~I~l~G~~GsGKsT~~~~L 26 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANI 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999865543
No 255
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=89.64 E-value=0.19 Score=48.28 Aligned_cols=20 Identities=25% Similarity=0.253 Sum_probs=15.9
Q ss_pred CEEEEcCCCCChhHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAI 429 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I 429 (874)
.++|.|+|||||||+...+.
T Consensus 9 ~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 47899999999998655433
No 256
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=89.57 E-value=0.19 Score=49.65 Aligned_cols=19 Identities=32% Similarity=0.499 Sum_probs=15.4
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 002841 411 YLIYGPPGTGKTMTLVEAI 429 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve~I 429 (874)
++|.|+|||||||.+..+.
T Consensus 3 I~i~G~~GsGKsT~~~~L~ 21 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEIS 21 (205)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECCCccCHHHHHHHHH
Confidence 6899999999998765443
No 257
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=89.52 E-value=0.42 Score=52.81 Aligned_cols=45 Identities=27% Similarity=0.295 Sum_probs=31.5
Q ss_pred HHHHHHHhcc-CCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeE
Q 002841 396 MCSIEKILGL-KGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARL 441 (874)
Q Consensus 396 ~~AV~~il~~-~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rI 441 (874)
.+||...+-- ++ .-.+|+||||||||+.+.+++.++.+.+++..+
T Consensus 163 iraID~l~PigrG-QR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~ 208 (427)
T 3l0o_A 163 TRLIDLFAPIGKG-QRGMIVAPPKAGKTTILKEIANGIAENHPDTIR 208 (427)
T ss_dssp HHHHHHHSCCBTT-CEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEE
T ss_pred chhhhhcccccCC-ceEEEecCCCCChhHHHHHHHHHHhhcCCCeEE
Confidence 4666665531 22 237999999999999998888777765555443
No 258
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=89.47 E-value=0.19 Score=49.63 Aligned_cols=20 Identities=30% Similarity=0.509 Sum_probs=15.8
Q ss_pred CEEEEcCCCCChhHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAI 429 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I 429 (874)
.++|.|+|||||||....+.
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~ 33 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLV 33 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999998654433
No 259
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=89.46 E-value=0.19 Score=49.38 Aligned_cols=19 Identities=47% Similarity=0.567 Sum_probs=15.6
Q ss_pred CEEEEcCCCCChhHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEA 428 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~ 428 (874)
.++|.|+|||||||+...+
T Consensus 12 ~I~l~G~~GsGKSTv~~~L 30 (184)
T 1y63_A 12 NILITGTPGTGKTSMAEMI 30 (184)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999876543
No 260
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=89.44 E-value=0.23 Score=56.13 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=17.5
Q ss_pred CCEEEEcCCCCChhHHHHHHHHHHH
Q 002841 409 PPYLIYGPPGTGKTMTLVEAILQLY 433 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I~~ll 433 (874)
..+++.||||||||+++.. ++..+
T Consensus 51 ~~iLl~GppGtGKT~lar~-lA~~l 74 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARR-LAKLA 74 (444)
T ss_dssp CCEEEECCTTSSHHHHHHH-HHHHT
T ss_pred ceEEEEcCCCCCHHHHHHH-HHHHc
Confidence 3589999999999986543 44433
No 261
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=89.41 E-value=0.2 Score=50.68 Aligned_cols=20 Identities=30% Similarity=0.579 Sum_probs=15.8
Q ss_pred CEEEEcCCCCChhHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAI 429 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I 429 (874)
.++|.|+|||||||....++
T Consensus 6 ~I~l~G~~GsGKsT~a~~La 25 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAPNLQ 25 (220)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999998655443
No 262
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=89.30 E-value=0.3 Score=55.21 Aligned_cols=36 Identities=25% Similarity=0.291 Sum_probs=27.3
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecC
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAP 446 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~Ap 446 (874)
.++|.|++|+|||||++.++..+... .+.+|++++.
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~-~G~kVllvd~ 137 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREK-HKKKVLVVSA 137 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT-SCCCEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHh-cCCeEEEEec
Confidence 35678999999999999988777653 2677776643
No 263
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=89.20 E-value=0.2 Score=50.01 Aligned_cols=23 Identities=17% Similarity=0.078 Sum_probs=17.9
Q ss_pred CEEEEcCCCCChhHHHHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQL 432 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~l 432 (874)
.++|.|+|||||||.+..+...+
T Consensus 12 ~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999998766555443
No 264
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=89.19 E-value=0.22 Score=48.83 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=16.8
Q ss_pred EEEEcCCCCChhHHHHHHHHHH
Q 002841 411 YLIYGPPGTGKTMTLVEAILQL 432 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve~I~~l 432 (874)
++|.|+|||||||.+..+...+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999998765544433
No 265
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=89.19 E-value=0.24 Score=54.14 Aligned_cols=50 Identities=16% Similarity=0.112 Sum_probs=33.3
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHHHhc----CCCeEEEecCCHH-HHHHHHHHHh
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLYATR----EDARLLVCAPSNS-AADHLLEKIL 459 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll~~~----~~~rILv~ApSNs-AaD~l~~rL~ 459 (874)
.++|.||||||||+.+..++....... .+.++++++..+. ..+.+.+++.
T Consensus 124 i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~ 178 (343)
T 1v5w_A 124 ITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIAD 178 (343)
T ss_dssp EEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 589999999999998887776543211 2567777776553 2444554443
No 266
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=89.13 E-value=0.22 Score=48.17 Aligned_cols=19 Identities=32% Similarity=0.615 Sum_probs=15.6
Q ss_pred CEEEEcCCCCChhHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEA 428 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~ 428 (874)
.++|.||||+||||++..+
T Consensus 10 ~i~l~G~~GsGKSTl~~~l 28 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEV 28 (175)
T ss_dssp EEEEECSTTSCHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 4789999999999876543
No 267
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=89.12 E-value=0.46 Score=48.48 Aligned_cols=25 Identities=32% Similarity=0.333 Sum_probs=19.5
Q ss_pred CCEEEEcCCCCChhHHHHHHHHHHH
Q 002841 409 PPYLIYGPPGTGKTMTLVEAILQLY 433 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I~~ll 433 (874)
..+.|.||+|+||||++..++...+
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~~~~ 55 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIYKGA 55 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4689999999999998876654333
No 268
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=89.08 E-value=0.34 Score=50.55 Aligned_cols=33 Identities=21% Similarity=0.294 Sum_probs=22.1
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEe
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLYATREDARLLVC 444 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ 444 (874)
.++|.|+|||||||.+..+...+-. .+..++++
T Consensus 6 lIvl~G~pGSGKSTla~~La~~L~~--~g~~~i~~ 38 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKILSK--NNIDVIVL 38 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh--CCCEEEEE
Confidence 4789999999999876665544432 23445433
No 269
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=89.02 E-value=0.23 Score=53.80 Aligned_cols=50 Identities=10% Similarity=0.097 Sum_probs=32.9
Q ss_pred CCEEEEcCCCCChhHHHHHHHHHHHHhc----CCCeEEEecCCHH-HHHHHHHHH
Q 002841 409 PPYLIYGPPGTGKTMTLVEAILQLYATR----EDARLLVCAPSNS-AADHLLEKI 458 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I~~ll~~~----~~~rILv~ApSNs-AaD~l~~rL 458 (874)
..++|.||||||||+.+...+....... .+.++++++..+. -.+.+.+++
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~ 162 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMA 162 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHH
T ss_pred cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHH
Confidence 3689999999999999888776643310 1567777776553 134444444
No 270
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=89.01 E-value=0.22 Score=51.55 Aligned_cols=20 Identities=30% Similarity=0.645 Sum_probs=15.6
Q ss_pred CEEEEcCCCCChhHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAI 429 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I 429 (874)
.++|.|||||||||....+.
T Consensus 31 ~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999998654433
No 271
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=89.00 E-value=0.21 Score=50.33 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=15.5
Q ss_pred EEEEcCCCCChhHHHHHHHH
Q 002841 411 YLIYGPPGTGKTMTLVEAIL 430 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve~I~ 430 (874)
++|.|||||||||.+..+..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999986554433
No 272
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=89.00 E-value=0.21 Score=49.91 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=18.1
Q ss_pred CEEEEcCCCCChhHHHHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQL 432 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~l 432 (874)
.++|.|+|||||||.+..+...+
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999998776555443
No 273
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=88.99 E-value=0.27 Score=48.92 Aligned_cols=41 Identities=17% Similarity=0.267 Sum_probs=25.1
Q ss_pred CCCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHH
Q 002841 389 CNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYA 434 (874)
Q Consensus 389 ~~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~ 434 (874)
..++..++.+... .. ...+.|.||+|+||||++.. +...+.
T Consensus 10 ~~~~~~~~~~~~~---~~-g~~i~l~G~sGsGKSTl~~~-La~~l~ 50 (200)
T 3uie_A 10 CSVEKVDRQRLLD---QK-GCVIWVTGLSGSGKSTLACA-LNQMLY 50 (200)
T ss_dssp CCCCHHHHHHHHT---SC-CEEEEEECSTTSSHHHHHHH-HHHHHH
T ss_pred cccCHHHHHHhcC---CC-CeEEEEECCCCCCHHHHHHH-HHHHHH
Confidence 4456666554332 11 13578999999999987654 444443
No 274
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=88.96 E-value=0.15 Score=49.53 Aligned_cols=19 Identities=42% Similarity=0.433 Sum_probs=11.4
Q ss_pred CEEEEcCCCCChhHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEA 428 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~ 428 (874)
.++|.|+|||||||....+
T Consensus 7 ~I~l~G~~GsGKST~a~~L 25 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTL 25 (183)
T ss_dssp EEEEECCC----CHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999875543
No 275
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=88.94 E-value=0.23 Score=47.53 Aligned_cols=18 Identities=17% Similarity=0.050 Sum_probs=14.8
Q ss_pred EEEEcCCCCChhHHHHHH
Q 002841 411 YLIYGPPGTGKTMTLVEA 428 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve~ 428 (874)
++|.|+|||||||....+
T Consensus 3 I~l~G~~GsGKsT~a~~L 20 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLL 20 (168)
T ss_dssp EEEESCTTSCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 689999999999865543
No 276
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=88.92 E-value=0.2 Score=49.26 Aligned_cols=20 Identities=40% Similarity=0.665 Sum_probs=16.2
Q ss_pred CEEEEcCCCCChhHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAI 429 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I 429 (874)
.++|.||+|+||||++..+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~ 23 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLA 23 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 36899999999999866543
No 277
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=88.92 E-value=0.45 Score=51.83 Aligned_cols=49 Identities=24% Similarity=0.324 Sum_probs=38.8
Q ss_pred CCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHhc
Q 002841 409 PPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILG 460 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~~ 460 (874)
..++|.|+||+|||+.+...+..+.. .+.+|++.+.--+ .+.+..|+..
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlEms-~~ql~~Rlls 95 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLEMS-AEQLALRALS 95 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESSSC-HHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCCCC-HHHHHHHHHH
Confidence 46899999999999999888877766 5689999988554 4566677754
No 278
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=88.83 E-value=0.19 Score=50.24 Aligned_cols=20 Identities=35% Similarity=0.833 Sum_probs=16.1
Q ss_pred CCEEEEcCCCCChhHHHHHH
Q 002841 409 PPYLIYGPPGTGKTMTLVEA 428 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~ 428 (874)
.+++|.||||+||||.+..+
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L 32 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKV 32 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 46899999999999865443
No 279
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=88.81 E-value=0.23 Score=50.53 Aligned_cols=20 Identities=35% Similarity=0.443 Sum_probs=15.7
Q ss_pred EEEEcCCCCChhHHHHHHHH
Q 002841 411 YLIYGPPGTGKTMTLVEAIL 430 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve~I~ 430 (874)
++|.|||||||||.+..+..
T Consensus 3 I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999987654433
No 280
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=88.73 E-value=0.24 Score=48.69 Aligned_cols=22 Identities=36% Similarity=0.629 Sum_probs=16.7
Q ss_pred EEEEcCCCCChhHHHHHHHHHHH
Q 002841 411 YLIYGPPGTGKTMTLVEAILQLY 433 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve~I~~ll 433 (874)
+.|.||+|+||||.+-. +..++
T Consensus 3 i~l~G~nGsGKTTLl~~-l~g~l 24 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKK-IVERL 24 (178)
T ss_dssp EEEECCTTSSHHHHHHH-HHHHH
T ss_pred EEEECCCCCCHHHHHHH-HHHHh
Confidence 68999999999987654 44444
No 281
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=88.69 E-value=0.24 Score=50.72 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=16.3
Q ss_pred CEEEEcCCCCChhHHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAIL 430 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~ 430 (874)
.++|.|+|||||||.+..+..
T Consensus 18 ~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999987654443
No 282
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=88.54 E-value=0.32 Score=52.27 Aligned_cols=37 Identities=27% Similarity=0.285 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHH
Q 002841 393 EEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQ 431 (874)
Q Consensus 393 ~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ 431 (874)
+.+.+.+...+... +.++|.||+|+|||+.+.+.+..
T Consensus 18 ~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 18 EEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp HHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHH
Confidence 55666676666542 56899999999999987765543
No 283
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=88.39 E-value=0.25 Score=56.42 Aligned_cols=19 Identities=47% Similarity=0.789 Sum_probs=15.6
Q ss_pred CEEEEcCCCCChhHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEA 428 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~ 428 (874)
.++|.||||||||+++-..
T Consensus 51 gvLL~GppGtGKT~Larai 69 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAV 69 (476)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 4899999999999865443
No 284
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=88.34 E-value=0.19 Score=51.05 Aligned_cols=19 Identities=32% Similarity=0.522 Sum_probs=15.4
Q ss_pred CEEEEcCCCCChhHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEA 428 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~ 428 (874)
.++|.|||||||||.+..+
T Consensus 9 ~I~l~G~~GsGKsT~a~~L 27 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVSSRI 27 (227)
T ss_dssp EEEEEECTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999865443
No 285
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=88.24 E-value=0.25 Score=49.95 Aligned_cols=20 Identities=25% Similarity=0.409 Sum_probs=15.6
Q ss_pred CEEEEcCCCCChhHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAI 429 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I 429 (874)
.++|.|+|||||||....+.
T Consensus 7 ~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46899999999998655433
No 286
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=88.24 E-value=0.37 Score=56.07 Aligned_cols=24 Identities=38% Similarity=0.591 Sum_probs=18.1
Q ss_pred CCEEEEcCCCCChhHHHHHHHHHHH
Q 002841 409 PPYLIYGPPGTGKTMTLVEAILQLY 433 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I~~ll 433 (874)
..+++.||||||||+++- ++...+
T Consensus 109 ~~vll~Gp~GtGKTtlar-~ia~~l 132 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSLAK-SIAKSL 132 (543)
T ss_dssp CEEEEESSSSSSHHHHHH-HHHHHH
T ss_pred CEEEEECCCCCCHHHHHH-HHHHhc
Confidence 468999999999997654 454444
No 287
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=88.18 E-value=0.22 Score=49.45 Aligned_cols=19 Identities=26% Similarity=0.476 Sum_probs=15.2
Q ss_pred CEEEEcCCCCChhHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEA 428 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~ 428 (874)
.++|.|+|||||||....+
T Consensus 17 ~I~l~G~~GsGKsT~~~~L 35 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKL 35 (203)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3689999999999865443
No 288
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=88.12 E-value=0.24 Score=49.80 Aligned_cols=41 Identities=24% Similarity=0.306 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHH
Q 002841 392 NEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQL 432 (874)
Q Consensus 392 N~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~l 432 (874)
|.++.+.+...+.....+.++|.|++|+||||++...+..+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 14 NKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34455555555533333457899999999999877666554
No 289
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=88.09 E-value=0.27 Score=49.45 Aligned_cols=20 Identities=25% Similarity=0.380 Sum_probs=16.2
Q ss_pred CCEEEEcCCCCChhHHHHHH
Q 002841 409 PPYLIYGPPGTGKTMTLVEA 428 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~ 428 (874)
..++|.||+|+||||++..+
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L 28 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAV 28 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHH
Confidence 35889999999999976543
No 290
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=87.95 E-value=0.26 Score=56.75 Aligned_cols=50 Identities=12% Similarity=0.144 Sum_probs=38.1
Q ss_pred CCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHhc
Q 002841 409 PPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILG 460 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~~ 460 (874)
..++|.|+||+|||+.+...+..+... .+.++|+++.-.++ ..+..|+..
T Consensus 243 ~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~s~-~~l~~r~~~ 292 (503)
T 1q57_A 243 EVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEESV-EETAEDLIG 292 (503)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSSCH-HHHHHHHHH
T ss_pred eEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccCCH-HHHHHHHHH
Confidence 368999999999999998888777642 25789999886654 466667643
No 291
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=87.87 E-value=0.39 Score=54.44 Aligned_cols=49 Identities=14% Similarity=0.154 Sum_probs=38.4
Q ss_pred CCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHhc
Q 002841 409 PPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILG 460 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~~ 460 (874)
..++|.|+||+|||+.+...+..+... +.++|+.+.-.+ .+.+..|+..
T Consensus 198 ~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEms-~~ql~~R~~~ 246 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEMG-KKENIKRLIV 246 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSSC-TTHHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCCC-HHHHHHHHHH
Confidence 368999999999999999988887763 678999988644 4455666653
No 292
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=87.87 E-value=0.27 Score=53.17 Aligned_cols=22 Identities=18% Similarity=0.101 Sum_probs=17.9
Q ss_pred CEEEEcCCCCChhHHHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQ 431 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ 431 (874)
.++|.||||||||+.+...+.+
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 3699999999999987766544
No 293
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=87.71 E-value=0.39 Score=49.64 Aligned_cols=34 Identities=21% Similarity=0.152 Sum_probs=26.6
Q ss_pred CCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEec
Q 002841 409 PPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCA 445 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~A 445 (874)
..+++.|.+|+||||++...+..+. .+.+++++.
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~---~g~~v~vvd 48 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLE---DNYKVAYVN 48 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT---TTSCEEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHH---CCCeEEEEe
Confidence 3478999999999999988776654 356777765
No 294
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=87.59 E-value=0.33 Score=48.85 Aligned_cols=42 Identities=26% Similarity=0.345 Sum_probs=28.3
Q ss_pred CHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHH
Q 002841 392 NEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLY 433 (874)
Q Consensus 392 N~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll 433 (874)
|+.|.+.++..+.....+-++|.|.+|+|||+.+...+....
T Consensus 22 ~~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 22 NKRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 455666666555433334478889999999998877665543
No 295
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=87.42 E-value=0.21 Score=51.99 Aligned_cols=19 Identities=32% Similarity=0.361 Sum_probs=15.3
Q ss_pred CEEEEcCCCCChhHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEA 428 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~ 428 (874)
.++|.|||||||||++..+
T Consensus 34 ~i~l~G~~GsGKSTla~~L 52 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRIK 52 (253)
T ss_dssp EEEEESCGGGTTHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3789999999999865543
No 296
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=87.41 E-value=0.45 Score=52.76 Aligned_cols=41 Identities=24% Similarity=0.509 Sum_probs=33.4
Q ss_pred CCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHH
Q 002841 409 PPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAA 451 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAa 451 (874)
+.++|.||+|+|||+++...+.++.. .+.+|+++=+.+...
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~~~~~~~--~~~~~~~~D~~~~~~ 76 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKMLLLREYM--QGSRVIIIDPEREYK 76 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEEESSCCSH
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHHH--CCCEEEEEeCCcCHH
Confidence 56899999999999999888877764 467899988876544
No 297
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=87.36 E-value=0.23 Score=49.27 Aligned_cols=20 Identities=20% Similarity=0.260 Sum_probs=16.1
Q ss_pred CEEEEcCCCCChhHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAI 429 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I 429 (874)
.++|.|+|||||||.+..+.
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~ 25 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIM 25 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 47899999999998765443
No 298
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=87.36 E-value=0.43 Score=55.11 Aligned_cols=36 Identities=19% Similarity=0.203 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHH
Q 002841 391 LNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEA 428 (874)
Q Consensus 391 LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~ 428 (874)
+++.+.+-+...+... ..++|.||.||||||++..+
T Consensus 245 ~~~~~l~~l~~~v~~g--~~i~I~GptGSGKTTlL~aL 280 (511)
T 2oap_1 245 VPSGVLAYLWLAIEHK--FSAIVVGETASGKTTTLNAI 280 (511)
T ss_dssp SCHHHHHHHHHHHHTT--CCEEEEESTTSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCC--CEEEEECCCCCCHHHHHHHH
Confidence 6777777777666543 24899999999999987643
No 299
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=87.27 E-value=0.62 Score=52.38 Aligned_cols=42 Identities=24% Similarity=0.396 Sum_probs=34.9
Q ss_pred CCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHH
Q 002841 409 PPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAAD 452 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD 452 (874)
..++|.|++|||||+++...+.+++. .+..++|.=|......
T Consensus 54 ~h~~i~G~tGsGKs~~~~~li~~~~~--~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 54 RHLLVNGATGTGKSVLLRELAYTGLL--RGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHH--TTCEEEEEEETTHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH--CCCcEEEEeCCCchhH
Confidence 45899999999999998888888876 4578999999877654
No 300
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=87.22 E-value=0.5 Score=51.28 Aligned_cols=34 Identities=21% Similarity=0.281 Sum_probs=24.1
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEec
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCA 445 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~A 445 (874)
.+.|.||.|+||||++..++.. +.. .+.+|++.+
T Consensus 131 vi~lvG~nGaGKTTll~~Lag~-l~~-~~g~V~l~g 164 (328)
T 3e70_C 131 VIMFVGFNGSGKTTTIAKLANW-LKN-HGFSVVIAA 164 (328)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH-HHH-TTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHH-HHh-cCCEEEEEe
Confidence 5789999999999988766554 443 345666553
No 301
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=87.16 E-value=0.33 Score=50.01 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=16.4
Q ss_pred CCEEEEcCCCCChhHHHHHHH
Q 002841 409 PPYLIYGPPGTGKTMTLVEAI 429 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I 429 (874)
..+.|.||||+||||.+..+.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 358899999999998765433
No 302
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=87.13 E-value=0.3 Score=47.84 Aligned_cols=20 Identities=15% Similarity=0.303 Sum_probs=16.2
Q ss_pred CCEEEEcCCCCChhHHHHHH
Q 002841 409 PPYLIYGPPGTGKTMTLVEA 428 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~ 428 (874)
.+++|.||+|+||||++..+
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L 25 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTL 25 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 35899999999999876543
No 303
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=87.08 E-value=0.6 Score=52.79 Aligned_cols=50 Identities=16% Similarity=0.139 Sum_probs=38.0
Q ss_pred CCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHhc
Q 002841 409 PPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILG 460 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~~ 460 (874)
..++|.|+||+|||+.+...+..+... .+.++++.+.-.++ +.+..|+..
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE~~~-~~l~~R~~~ 250 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLEMPA-AQLTLRMMC 250 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSSCH-HHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECCCCH-HHHHHHHHH
Confidence 368999999999999988888777652 35689998886554 466677653
No 304
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=86.86 E-value=2.5 Score=39.77 Aligned_cols=88 Identities=17% Similarity=0.192 Sum_probs=56.8
Q ss_pred eEEe-ccccCCCCcceeeecCCeEEEEEEEEcCCCccEEEeeecccCCCCceEEEEecCCCCCCCCCCCCccceeeeccc
Q 002841 41 VQIS-FPFPFIDGKPQSVSVGETAVDSITIKNTTREPVELWSKIYASTPENTFTLSVMKPPSPGSDSGTNRGFVEFFTLE 119 (874)
Q Consensus 41 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (874)
|.|+ ...+|| .+..++...-+|+|.|+|.-|..+.-.. ++ .+.....+++.- +-.
T Consensus 27 i~v~~~~ldFG-----~v~~~~~~~~~l~I~Ntg~vpa~F~f~~---------------~~---~~~~~~~~wl~v-~P~ 82 (140)
T 3qbt_B 27 LELSRREFVFE-----NVKFRQLQKEKFQISNNGQVPCHFSFIP---------------KL---NDSQYCKPWLRA-EPF 82 (140)
T ss_dssp EEESCCEEEEE-----EECBTCCEEEEEEEEECSSSCEEEEEEC---------------CT---TCSSSSCTTEEE-ESC
T ss_pred eEeeeeeEEee-----eceeeeeeeeEEEEEcCCccceEEEEec---------------CC---CchhhhhHhhhc-CCc
Confidence 4443 256778 8889999999999999999998765411 01 011112222222 123
Q ss_pred ceeeCCCCeEEEEEEEecCcc---------ceEeEEEEEEcc
Q 002841 120 ERMIQPGQTLTIWLSCKPKGI---------GLHTTVLQFDVE 152 (874)
Q Consensus 120 ~~~~~~g~~~~~~~~~~~~~~---------g~~~~~~~f~~~ 152 (874)
..+|.||++..|.|++....- ..+..++++.+.
T Consensus 83 ~G~L~Pge~~~I~v~~~v~~~~~~~ln~g~~~l~diLvL~Ve 124 (140)
T 3qbt_B 83 EGYLEPNETVDISLDVYVSKDSVTILNSGEDKIEDILVLHLD 124 (140)
T ss_dssp EEEECTTCEEEEEEEECBCHHHHHHHHHSSSCSCEEEEEEET
T ss_pred ccccCCCCeeEEEEEEEEccCcccccccchhhhheeEEEEee
Confidence 468999999999999984332 455667777664
No 305
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=86.85 E-value=0.67 Score=50.86 Aligned_cols=43 Identities=21% Similarity=0.375 Sum_probs=26.7
Q ss_pred HHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEE
Q 002841 398 SIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLL 442 (874)
Q Consensus 398 AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rIL 442 (874)
.+..++...+ +.++|.||.|+||||++..++. ++....+.+|+
T Consensus 114 ~l~~l~~~~~-g~i~I~GptGSGKTTlL~~l~g-~~~~~~~~~i~ 156 (356)
T 3jvv_A 114 VFKRVSDVPR-GLVLVTGPTGSGKSTTLAAMLD-YLNNTKYHHIL 156 (356)
T ss_dssp HHHHHHHCSS-EEEEEECSTTSCHHHHHHHHHH-HHHHHCCCEEE
T ss_pred HHHHHHhCCC-CEEEEECCCCCCHHHHHHHHHh-cccCCCCcEEE
Confidence 3444443322 4689999999999999876554 44322344554
No 306
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=86.77 E-value=0.36 Score=48.67 Aligned_cols=19 Identities=32% Similarity=0.389 Sum_probs=15.2
Q ss_pred CEEEEcCCCCChhHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEA 428 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~ 428 (874)
.+.|.||+||||||++..+
T Consensus 7 ~i~i~G~~GsGKSTl~~~L 25 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAM 25 (227)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3789999999999865543
No 307
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=86.76 E-value=0.31 Score=48.24 Aligned_cols=18 Identities=33% Similarity=0.608 Sum_probs=15.2
Q ss_pred CEEEEcCCCCChhHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve 427 (874)
.+.|.||+|+||||++-.
T Consensus 9 ii~l~Gp~GsGKSTl~~~ 26 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRA 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHH
Confidence 578999999999987654
No 308
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=86.75 E-value=0.66 Score=45.48 Aligned_cols=36 Identities=31% Similarity=0.232 Sum_probs=24.2
Q ss_pred CCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecC
Q 002841 409 PPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAP 446 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~Ap 446 (874)
+.++|.||+|+||||++..++..+.. .+.++-++..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~--~g~~v~~i~~ 42 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCA--RGIRPGLIKH 42 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccc--cCCceeEEee
Confidence 45789999999999887776655433 3344444443
No 309
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=86.70 E-value=0.36 Score=51.95 Aligned_cols=50 Identities=12% Similarity=0.183 Sum_probs=33.1
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHHHh----------cCC----CeEEEecCCHHH-HHHHHHHHh
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLYAT----------RED----ARLLVCAPSNSA-ADHLLEKIL 459 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll~~----------~~~----~rILv~ApSNsA-aD~l~~rL~ 459 (874)
.++|.||||+|||+.+...+...... ..+ .++++++..+.. .+.+.+++.
T Consensus 100 i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~ 164 (322)
T 2i1q_A 100 VTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAE 164 (322)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHH
Confidence 58999999999999988777653211 112 678887776541 445555543
No 310
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=86.69 E-value=0.57 Score=50.22 Aligned_cols=34 Identities=29% Similarity=0.420 Sum_probs=24.9
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEec
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCA 445 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~A 445 (874)
.+.|.||.|+||||++..++.. +.. .+.+|++.+
T Consensus 102 vi~lvG~nGsGKTTll~~Lag~-l~~-~~g~V~l~g 135 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLGKLAHR-LKN-EGTKVLMAA 135 (302)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH-HHH-TTCCEEEEC
T ss_pred EEEEEcCCCCCHHHHHHHHHHH-HHH-cCCeEEEEe
Confidence 4789999999999998775544 432 356777765
No 311
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=86.61 E-value=0.33 Score=48.14 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=15.0
Q ss_pred CEEEEcCCCCChhHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve 427 (874)
.+.|.||+|+||||++-.
T Consensus 8 ~i~l~G~~GsGKSTl~~~ 25 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKR 25 (207)
T ss_dssp EEEEECSTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999986543
No 312
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=86.48 E-value=0.66 Score=50.79 Aligned_cols=46 Identities=22% Similarity=0.275 Sum_probs=32.6
Q ss_pred HhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCC
Q 002841 402 ILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPS 447 (874)
Q Consensus 402 il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApS 447 (874)
++........++.|.+|+||||+.+..+..+.....+.+||++..-
T Consensus 12 ~l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D 57 (348)
T 3io3_A 12 IVQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTD 57 (348)
T ss_dssp HHTCTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECC
T ss_pred HhcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 3444333467889999999999998888777621357788877653
No 313
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=86.45 E-value=0.49 Score=47.47 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHH
Q 002841 390 NLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQ 431 (874)
Q Consensus 390 ~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ 431 (874)
.....++..... . ....++|.|+||+||||.+..+...
T Consensus 11 ~~~~~~r~~~~~--~--~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 11 ALTRSERTELRN--Q--RGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CCCHHHHHHHHT--S--SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCHHHhhcccC--C--CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 345555555321 1 1135789999999999876554433
No 314
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=86.35 E-value=0.28 Score=47.67 Aligned_cols=18 Identities=22% Similarity=0.423 Sum_probs=15.6
Q ss_pred CEEEEcCCCCChhHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve 427 (874)
.+.|.||+|+||||.+-.
T Consensus 11 i~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999998764
No 315
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=86.33 E-value=0.34 Score=48.22 Aligned_cols=17 Identities=29% Similarity=0.214 Sum_probs=14.3
Q ss_pred EEEEcCCCCChhHHHHH
Q 002841 411 YLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve 427 (874)
+.|.||+||||||++..
T Consensus 5 i~l~G~~GsGKST~~~~ 21 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIANL 21 (206)
T ss_dssp EEEECSTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 67999999999987544
No 316
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=86.21 E-value=0.23 Score=60.23 Aligned_cols=16 Identities=63% Similarity=1.167 Sum_probs=14.0
Q ss_pred EEEEcCCCCChhHHHH
Q 002841 411 YLIYGPPGTGKTMTLV 426 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlv 426 (874)
+|++||||||||+.+-
T Consensus 241 ILL~GPPGTGKT~LAr 256 (806)
T 3cf2_A 241 ILLYGPPGTGKTLIAR 256 (806)
T ss_dssp EEEECCTTSCHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 7999999999997643
No 317
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=86.03 E-value=0.38 Score=47.26 Aligned_cols=18 Identities=50% Similarity=0.877 Sum_probs=15.3
Q ss_pred CEEEEcCCCCChhHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve 427 (874)
++.|.||.|+||||++-.
T Consensus 3 ii~l~GpsGaGKsTl~~~ 20 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKK 20 (186)
T ss_dssp CEEEESSSSSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 588999999999987654
No 318
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=86.01 E-value=0.6 Score=50.10 Aligned_cols=35 Identities=29% Similarity=0.465 Sum_probs=25.1
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecC
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAP 446 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~Ap 446 (874)
.+.|.||.|+||||++..++. ++.. .+.+|++.+.
T Consensus 104 vi~lvG~nGsGKTTll~~Lag-ll~~-~~g~V~l~g~ 138 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGR-YYQN-LGKKVMFCAG 138 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHH-HHHT-TTCCEEEECC
T ss_pred EEEEECCCCCcHHHHHHHHHH-HHHh-cCCEEEEEee
Confidence 578999999999998876554 4442 3567777654
No 319
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=85.80 E-value=0.55 Score=51.10 Aligned_cols=37 Identities=24% Similarity=0.249 Sum_probs=29.1
Q ss_pred CCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCC
Q 002841 409 PPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPS 447 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApS 447 (874)
...++.|.+|+||||+.+..+..+.+ .+.+||++..-
T Consensus 17 ~i~~~sgkGGvGKTt~a~~lA~~la~--~g~~vllid~D 53 (334)
T 3iqw_A 17 RWIFVGGKGGVGKTTTSCSLAIQLAK--VRRSVLLLSTD 53 (334)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHTT--SSSCEEEEECC
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHh--CCCcEEEEECC
Confidence 45788999999999999888777664 46788777653
No 320
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=85.79 E-value=0.34 Score=55.70 Aligned_cols=21 Identities=43% Similarity=0.635 Sum_probs=16.3
Q ss_pred EEEEcCCCCChhHHHHHHHHHH
Q 002841 411 YLIYGPPGTGKTMTLVEAILQL 432 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve~I~~l 432 (874)
++|.||||||||+++- +|...
T Consensus 67 vLL~GppGtGKTtLar-aIa~~ 87 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLAR-AVAGE 87 (499)
T ss_dssp EEEECSSSSSHHHHHH-HHHHH
T ss_pred EEEECCCCCCHHHHHH-HHHHH
Confidence 8999999999997654 44443
No 321
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=85.58 E-value=0.72 Score=46.52 Aligned_cols=38 Identities=21% Similarity=0.138 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHH
Q 002841 391 LNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQL 432 (874)
Q Consensus 391 LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~l 432 (874)
-+..|+.++..+-.. ..+.|.||.|+||||.+-. +.-+
T Consensus 8 k~~g~~~~l~~i~~G---e~~~liG~nGsGKSTLl~~-l~Gl 45 (208)
T 3b85_A 8 KTLGQKHYVDAIDTN---TIVFGLGPAGSGKTYLAMA-KAVQ 45 (208)
T ss_dssp CSHHHHHHHHHHHHC---SEEEEECCTTSSTTHHHHH-HHHH
T ss_pred CCHhHHHHHHhccCC---CEEEEECCCCCCHHHHHHH-HhcC
Confidence 366788888887432 3578999999999987654 4444
No 322
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=85.43 E-value=1.1 Score=46.14 Aligned_cols=40 Identities=18% Similarity=0.203 Sum_probs=25.3
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHHHhcCCCe--EEEecCCHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLYATREDAR--LLVCAPSNSAA 451 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~r--ILv~ApSNsAa 451 (874)
.++|.|++|+||||.+..+...+-.. +.. ++.-.|+....
T Consensus 29 ~i~~eG~~GsGKsT~~~~l~~~l~~~--~~~~~~~~rep~~t~~ 70 (236)
T 3lv8_A 29 FIVIEGLEGAGKSTAIQVVVETLQQN--GIDHITRTREPGGTLL 70 (236)
T ss_dssp EEEEEESTTSCHHHHHHHHHHHHHHT--TCCCEEEEESSCSSHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc--CCCeeeeecCCCCCHH
Confidence 57899999999998776655544432 333 44445554433
No 323
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=85.27 E-value=0.45 Score=55.99 Aligned_cols=16 Identities=50% Similarity=0.744 Sum_probs=14.3
Q ss_pred CEEEEcCCCCChhHHH
Q 002841 410 PYLIYGPPGTGKTMTL 425 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tl 425 (874)
++++.||||||||+.+
T Consensus 329 ~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 329 HILIIGDPGTAKSQML 344 (595)
T ss_dssp CEEEEESSCCTHHHHH
T ss_pred ceEEECCCchHHHHHH
Confidence 7999999999999754
No 324
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=85.27 E-value=1.4 Score=43.77 Aligned_cols=33 Identities=21% Similarity=0.103 Sum_probs=21.4
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEe
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLYATREDARLLVC 444 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ 444 (874)
.+.|.||+|+||||++..+ ..++.. .+..|.+.
T Consensus 24 ~i~i~G~~GsGKstl~~~l-~~~~~~-~~~~v~~~ 56 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQL-SQTLRE-QGISVCVF 56 (201)
T ss_dssp EEEEEECTTSSHHHHHHHH-HHHHHH-TTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHH-HHHHhh-cCCeEEEe
Confidence 4789999999999876544 444432 23445544
No 325
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=85.23 E-value=1 Score=49.12 Aligned_cols=36 Identities=17% Similarity=0.236 Sum_probs=29.4
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCC
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPS 447 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApS 447 (874)
..++.|.+|+||||+.+..+..+.+ .+.|||++.--
T Consensus 28 i~v~sgKGGvGKTTvA~~LA~~lA~--~G~rVLlvD~D 63 (349)
T 3ug7_A 28 YIMFGGKGGVGKTTMSAATGVYLAE--KGLKVVIVSTD 63 (349)
T ss_dssp EEEEECSSSTTHHHHHHHHHHHHHH--SSCCEEEEECC
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHH--CCCeEEEEeCC
Confidence 4678899999999999988887776 46788888754
No 326
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=85.14 E-value=0.51 Score=45.82 Aligned_cols=21 Identities=24% Similarity=0.249 Sum_probs=16.3
Q ss_pred CEEEEcCCCCChhHHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAIL 430 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~ 430 (874)
.++|.|++||||||++..+..
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 468999999999987654443
No 327
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=84.96 E-value=1.2 Score=45.02 Aligned_cols=48 Identities=19% Similarity=0.185 Sum_probs=28.4
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHHHhcCCCe-EEEecCCHHHHHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLYATREDAR-LLVCAPSNSAADHLLEKI 458 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~r-ILv~ApSNsAaD~l~~rL 458 (874)
.++|.|++|+||||.+..+...+-.. .-.. ++.--|+........+.+
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~~v~~~rep~~t~~g~~ir~~ 53 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETLEQL-GIRDMVFTREPGGTQLAEKLRSL 53 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSCSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc-CCCcceeeeCCCCCHHHHHHHHH
Confidence 47889999999998876655544432 2224 344445554444444444
No 328
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=84.94 E-value=0.54 Score=46.80 Aligned_cols=20 Identities=35% Similarity=0.697 Sum_probs=16.5
Q ss_pred CCEEEEcCCCCChhHHHHHH
Q 002841 409 PPYLIYGPPGTGKTMTLVEA 428 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~ 428 (874)
.++.|.||.|+||||++-.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L 24 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKL 24 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 36899999999999876543
No 329
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=84.93 E-value=0.76 Score=50.48 Aligned_cols=35 Identities=29% Similarity=0.393 Sum_probs=25.3
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecC
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAP 446 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~Ap 446 (874)
.+.|.||.|+||||++..++.. +.. .+.+|++.+.
T Consensus 159 vi~lvG~nGsGKTTll~~Lag~-l~~-~~G~V~l~g~ 193 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLAHR-LKN-EGTKVLMAAG 193 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH-HHH-TTCCEEEECC
T ss_pred EEEEEcCCCChHHHHHHHHHhh-ccc-cCCEEEEecc
Confidence 4789999999999998765554 442 3567777653
No 330
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=84.83 E-value=0.53 Score=47.14 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=18.1
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLYA 434 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll~ 434 (874)
.+.|.||+|+||||++. ++..++.
T Consensus 24 ~v~I~G~sGsGKSTl~~-~l~~~~~ 47 (208)
T 3c8u_A 24 LVALSGAPGSGKSTLSN-PLAAALS 47 (208)
T ss_dssp EEEEECCTTSCTHHHHH-HHHHHHH
T ss_pred EEEEECCCCCCHHHHHH-HHHHHHh
Confidence 57899999999998654 4555554
No 331
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=84.57 E-value=0.81 Score=53.93 Aligned_cols=38 Identities=34% Similarity=0.470 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHH
Q 002841 393 EEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLY 433 (874)
Q Consensus 393 ~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll 433 (874)
..-.+.+...+... .+++|.||||||||+++ .++..++
T Consensus 47 ~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtla-r~ia~~l 84 (604)
T 3k1j_A 47 EHAVEVIKTAANQK--RHVLLIGEPGTGKSMLG-QAMAELL 84 (604)
T ss_dssp HHHHHHHHHHHHTT--CCEEEECCTTSSHHHHH-HHHHHTS
T ss_pred hhhHhhccccccCC--CEEEEEeCCCCCHHHHH-HHHhccC
Confidence 33445555555443 46999999999999765 4455544
No 332
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=84.57 E-value=0.54 Score=48.17 Aligned_cols=32 Identities=25% Similarity=0.422 Sum_probs=21.4
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEe
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLYATREDARLLVC 444 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ 444 (874)
.++|.||||+||||.+.. +...+.. +..++.+
T Consensus 28 ~i~i~G~~GsGKsT~~~~-l~~~l~~--~~~~~~~ 59 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINE-VYHRLVK--DYDVIMT 59 (229)
T ss_dssp EEEEECCTTSCHHHHHHH-HHHHHTT--TSCEEEE
T ss_pred EEEEEcCCCCCHHHHHHH-HHHHHhc--CCCceee
Confidence 478999999999987554 4454542 3455443
No 333
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=84.48 E-value=0.26 Score=49.18 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=16.5
Q ss_pred EEEEcCCCCChhHHHHHHHHHHH
Q 002841 411 YLIYGPPGTGKTMTLVEAILQLY 433 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve~I~~ll 433 (874)
++|.|++||||||.+..+ ...+
T Consensus 3 I~i~G~~GsGKsTl~~~L-~~~l 24 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKL-SGAF 24 (214)
T ss_dssp EEEEEEEEEEHHHHHHHH-HHHH
T ss_pred EEEEcCCCCCHHHHHHHH-HHHH
Confidence 689999999999866544 4444
No 334
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=84.35 E-value=0.52 Score=62.34 Aligned_cols=47 Identities=21% Similarity=0.253 Sum_probs=34.7
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKI 458 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL 458 (874)
.++|.||||||||+.+.+.+....+ .+.++++.++.+.-...+++++
T Consensus 1429 ~vll~GppGtGKT~LA~ala~ea~~--~G~~v~Fi~~e~~~~~l~a~~~ 1475 (2050)
T 3cmu_A 1429 IVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHALDPIYARKL 1475 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEECTTSCCCHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEEEcccccCHHHHHHc
Confidence 5899999999999999888777664 4678888887765433333333
No 335
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=84.30 E-value=1 Score=47.52 Aligned_cols=55 Identities=15% Similarity=0.117 Sum_probs=34.2
Q ss_pred HHHHHHHHHhccCCCCCEEEE---cCCCCChhHHHHHHHHHHHHhcCCCeEEEe--cCCHHHH
Q 002841 394 EQMCSIEKILGLKGAPPYLIY---GPPGTGKTMTLVEAILQLYATREDARLLVC--APSNSAA 451 (874)
Q Consensus 394 ~Q~~AV~~il~~~~~~~~lI~---GPPGTGKT~Tlve~I~~ll~~~~~~rILv~--ApSNsAa 451 (874)
+|...+...+...+ ..+.|. +-+|+||||+.+.++..+.+ .+.+||++ -+...+.
T Consensus 21 ~~~~~~~r~~~~~~-~~i~v~~~s~KGGvGKTT~a~nLA~~la~--~G~rVlliD~D~q~~~~ 80 (298)
T 2oze_A 21 KILEELRRILSNKN-EAIVILNNYFKGGVGKSKLSTMFAYLTDK--LNLKVLMIDKDLQATLT 80 (298)
T ss_dssp HHHHHHHHHHHHHC-SCEEEEECCSSSSSSHHHHHHHHHHHHHH--TTCCEEEEEECTTCHHH
T ss_pred HHHHHHHHHhcCCC-cEEEEEeccCCCCchHHHHHHHHHHHHHh--CCCeEEEEeCCCCCCHH
Confidence 34444555554322 234444 58999999999998877665 46788883 4444443
No 336
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=84.27 E-value=0.46 Score=47.82 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=17.5
Q ss_pred CEEEEcCCCCChhHHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAIL 430 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~ 430 (874)
.+.|.||+|+||||.+..++.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999988765544
No 337
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=84.23 E-value=0.87 Score=55.17 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=16.6
Q ss_pred CEEEEcCCCCChhHHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAIL 430 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~ 430 (874)
++++.||||||||+++..+..
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~ 543 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAE 543 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 499999999999987654433
No 338
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=84.21 E-value=0.49 Score=60.31 Aligned_cols=79 Identities=10% Similarity=-0.001 Sum_probs=53.1
Q ss_pred CCCeEECccccCCCceeeEEEEEeccCCCcCCccccccccccC------------------------CCCCceEeccccc
Q 002841 725 MPDIKVGSVEQFQGQERQVIIVSTVRSTIKHNDFDRKHCLGFL------------------------SNPRRFNVAVTRA 780 (874)
Q Consensus 725 ~~~v~V~TVd~fQG~E~dvVIiS~VRs~~~~~~~d~~~~lGFl------------------------~d~rrlNVAiTRA 780 (874)
...|.|+|+|..+|.|+++|++..+-...-... ...-+|+ .+.+.+|||+|||
T Consensus 585 ~d~V~i~t~~~argl~f~~V~l~G~~eg~~P~~---~~~~~~l~~~~R~~l~~~g~~l~~~~~~~~~eer~l~y~altrA 661 (1166)
T 3u4q_B 585 LDQVFVGNMDLSRMYGTSCTFVLGANDGVLPAR---PDENGVLSDDDREWLKTIGVELSSGGRERLLDEHFLIYMAFSSP 661 (1166)
T ss_dssp SSCEEEEESSSCCCSSCSEEEEECCBTTTTTTC---CCCCSSSCHHHHHHHHHHTCCCCCCSSHHHHHHHHHHHHHHTSC
T ss_pred CCEEEEecCcccccCCCCEEEEeCCCcCCCCCC---CCCCCCCCHHHHHHHHhCCCcCCCchHHHHHHhHHHHHHHHhcc
Confidence 346999999999999999999987754311000 0111221 1224599999999
Q ss_pred cccEEEEEcc-----ccccCChHHHHHHHHH
Q 002841 781 ISLLIIIGNP-----HIVSKDPYWHQLLWYC 806 (874)
Q Consensus 781 K~~LiIvGn~-----~~L~~~~~w~~ll~~~ 806 (874)
+..|++.... ..+..+++..++..++
T Consensus 662 ~~~L~lsy~~~~~~~~~~~pS~~l~el~~~~ 692 (1166)
T 3u4q_B 662 SDRLYVSYPIADAEGKTLLPSMIVKRLEELF 692 (1166)
T ss_dssp SSEEEEEEESSCSSSCCCCBCHHHHHHHHHS
T ss_pred cCeEEEEEeccCCCCCccCCCHHHHHHHHHc
Confidence 9999987542 2344577888877765
No 339
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=84.19 E-value=0.34 Score=58.77 Aligned_cols=42 Identities=24% Similarity=0.373 Sum_probs=26.0
Q ss_pred CCcCCCCCCHHHHHHHHHHhcc-------------CCCCCEEEEcCCCCChhHHH
Q 002841 384 LVPISCNLNEEQMCSIEKILGL-------------KGAPPYLIYGPPGTGKTMTL 425 (874)
Q Consensus 384 ~~~~~~~LN~~Q~~AV~~il~~-------------~~~~~~lI~GPPGTGKT~Tl 425 (874)
..|-+...-++.++.++.++.- ....-+|++||||||||.++
T Consensus 474 v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHH
Confidence 3444444456777777665421 11113799999999999653
No 340
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=84.08 E-value=1.2 Score=45.05 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=24.7
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEE-ecCCHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLYATREDARLLV-CAPSNSAA 451 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv-~ApSNsAa 451 (874)
.++|.||+|+||||.+..+...+ .. .+..+.. --|.....
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l-~~-~~~~v~~~~~p~~~~~ 48 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERL-RE-RGIEVQLTREPGGTPL 48 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-HT-TTCCEEEEESSCSSHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH-HH-cCCCcccccCCCCCHH
Confidence 57899999999998776555444 32 2344433 34544433
No 341
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=84.07 E-value=0.9 Score=48.42 Aligned_cols=35 Identities=29% Similarity=0.404 Sum_probs=25.5
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecC
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAP 446 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~Ap 446 (874)
.+.|.|++|+||||++..++..+.. .+.+|++...
T Consensus 100 ~i~i~g~~G~GKTT~~~~la~~~~~--~~~~v~l~~~ 134 (295)
T 1ls1_A 100 LWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVAA 134 (295)
T ss_dssp EEEEECCTTTTHHHHHHHHHHHHHH--TTCCEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEecC
Confidence 3567799999999998887765543 3567776553
No 342
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=83.96 E-value=0.89 Score=50.30 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=16.8
Q ss_pred CCEEEEcCCCCChhHHHHHHH
Q 002841 409 PPYLIYGPPGTGKTMTLVEAI 429 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I 429 (874)
..++|.|||||||||.+..++
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~ 190 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALL 190 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 358999999999998765444
No 343
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=83.94 E-value=0.39 Score=47.45 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=25.8
Q ss_pred EEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHhc
Q 002841 411 YLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILG 460 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~~ 460 (874)
++|.|++|||||+..-.. ... +.+++.++.....-+++.+|+..
T Consensus 2 ilV~Gg~~SGKS~~A~~l----a~~--~~~~~yiaT~~~~d~e~~~rI~~ 45 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEAL----IGD--APQVLYIATSQILDDEMAARIQH 45 (180)
T ss_dssp EEEEECTTSSHHHHHHHH----HCS--CSSEEEEECCCC------CHHHH
T ss_pred EEEECCCCCcHHHHHHHH----Hhc--CCCeEEEecCCCCCHHHHHHHHH
Confidence 689999999999764433 332 34566666655445677788775
No 344
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=83.85 E-value=0.52 Score=46.76 Aligned_cols=17 Identities=24% Similarity=0.218 Sum_probs=14.3
Q ss_pred EEEEcCCCCChhHHHHH
Q 002841 411 YLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve 427 (874)
+.|.||+||||||++..
T Consensus 4 i~i~G~~GsGKSTl~~~ 20 (204)
T 2if2_A 4 IGLTGNIGCGKSTVAQM 20 (204)
T ss_dssp EEEEECTTSSHHHHHHH
T ss_pred EEEECCCCcCHHHHHHH
Confidence 68999999999986543
No 345
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=83.81 E-value=0.89 Score=51.97 Aligned_cols=33 Identities=21% Similarity=0.362 Sum_probs=24.6
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEe
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLYATREDARLLVC 444 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ 444 (874)
.+.|.||.|+||||++..++. ++.. .+.+|++.
T Consensus 295 VI~LVGpNGSGKTTLl~~LAg-ll~~-~~G~V~l~ 327 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLAR-QFEQ-QGKSVMLA 327 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHH-HHHH-TTCCEEEE
T ss_pred EEEEECCCcccHHHHHHHHHH-Hhhh-cCCeEEEe
Confidence 578999999999999876554 4442 35678776
No 346
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=83.80 E-value=0.56 Score=47.12 Aligned_cols=21 Identities=38% Similarity=0.518 Sum_probs=17.1
Q ss_pred CEEEEcCCCCChhHHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAIL 430 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~ 430 (874)
.++|.||+|+|||+++.+++.
T Consensus 36 ~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 36 GVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp EEEEECCCTTTTHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 379999999999998766543
No 347
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=83.68 E-value=0.72 Score=55.82 Aligned_cols=23 Identities=35% Similarity=0.642 Sum_probs=17.3
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLY 433 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll 433 (874)
++++.||||||||+++.. +...+
T Consensus 490 ~~ll~G~~GtGKT~la~~-la~~l 512 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQ-LSKAL 512 (758)
T ss_dssp EEEEECSTTSSHHHHHHH-HHHHH
T ss_pred EEEEECCCCCcHHHHHHH-HHHHh
Confidence 589999999999986554 44333
No 348
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=83.46 E-value=1.3 Score=46.43 Aligned_cols=33 Identities=18% Similarity=0.323 Sum_probs=25.9
Q ss_pred CEEEEcC-CCCChhHHHHHHHHHHHHhcCCCeEEEe
Q 002841 410 PYLIYGP-PGTGKTMTLVEAILQLYATREDARLLVC 444 (874)
Q Consensus 410 ~~lI~GP-PGTGKT~Tlve~I~~ll~~~~~~rILv~ 444 (874)
.+.|.++ ||.|||++.+.++..+.+ .+.|||++
T Consensus 84 vI~vts~kgG~GKTt~a~nLA~~lA~--~G~rVLLI 117 (271)
T 3bfv_A 84 SIVITSEAPGAGKSTIAANLAVAYAQ--AGYKTLIV 117 (271)
T ss_dssp EEEEECSSTTSSHHHHHHHHHHHHHH--TTCCEEEE
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHHh--CCCeEEEE
Confidence 3566665 999999999998887775 46788876
No 349
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=83.40 E-value=0.66 Score=45.87 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=15.3
Q ss_pred CEEEEcCCCCChhHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEA 428 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~ 428 (874)
.+.|.|++||||||+...+
T Consensus 4 ~i~i~G~~GsGKst~~~~l 22 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRV 22 (208)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4689999999999875543
No 350
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=83.39 E-value=0.92 Score=48.96 Aligned_cols=36 Identities=25% Similarity=0.257 Sum_probs=29.4
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCC
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPS 447 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApS 447 (874)
..++.|.+|+||||+.+..+..+.+ .+.|||++..-
T Consensus 16 i~v~sgKGGvGKTTvA~~LA~~lA~--~G~rVLlvD~D 51 (324)
T 3zq6_A 16 FVFIGGKGGVGKTTISAATALWMAR--SGKKTLVISTD 51 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEECC
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHH--CCCcEEEEeCC
Confidence 4678899999999999988887776 47888887764
No 351
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=83.37 E-value=0.56 Score=49.65 Aligned_cols=19 Identities=37% Similarity=0.420 Sum_probs=15.4
Q ss_pred CEEEEcCCCCChhHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEA 428 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~ 428 (874)
.++|.|+|||||||....+
T Consensus 4 ~I~l~G~~GsGKST~a~~L 22 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREF 22 (301)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3789999999999875543
No 352
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=83.28 E-value=1.4 Score=46.89 Aligned_cols=34 Identities=24% Similarity=0.361 Sum_probs=26.3
Q ss_pred CEEEEcC-CCCChhHHHHHHHHHHHHhcCCCeEEEec
Q 002841 410 PYLIYGP-PGTGKTMTLVEAILQLYATREDARLLVCA 445 (874)
Q Consensus 410 ~~lI~GP-PGTGKT~Tlve~I~~ll~~~~~~rILv~A 445 (874)
.+.|.|+ ||.||||+.+.++..+.+ .+.+||++-
T Consensus 106 vI~vts~kgG~GKTtva~nLA~~lA~--~G~rVLLID 140 (299)
T 3cio_A 106 ILMITGATPDSGKTFVSSTLAAVIAQ--SDQKVLFID 140 (299)
T ss_dssp EEEEEESSSSSCHHHHHHHHHHHHHH--TTCCEEEEE
T ss_pred EEEEECCCCCCChHHHHHHHHHHHHh--CCCcEEEEE
Confidence 4566665 999999999988877765 467888764
No 353
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=82.90 E-value=0.59 Score=48.35 Aligned_cols=18 Identities=17% Similarity=0.198 Sum_probs=14.7
Q ss_pred CEEEEcCCCCChhHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve 427 (874)
.+.|.|||||||||+...
T Consensus 24 iI~I~G~~GSGKST~a~~ 41 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAK 41 (252)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 367999999999986543
No 354
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=82.51 E-value=0.38 Score=58.75 Aligned_cols=21 Identities=52% Similarity=1.002 Sum_probs=16.2
Q ss_pred CEEEEcCCCCChhHHHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQ 431 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ 431 (874)
.++|.||||||||++ +.++..
T Consensus 240 ~vLL~Gp~GtGKTtL-arala~ 260 (806)
T 1ypw_A 240 GILLYGPPGTGKTLI-ARAVAN 260 (806)
T ss_dssp EEEECSCTTSSHHHH-HHHHHH
T ss_pred eEEEECcCCCCHHHH-HHHHHH
Confidence 589999999999965 444444
No 355
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=82.51 E-value=0.74 Score=47.40 Aligned_cols=18 Identities=33% Similarity=0.460 Sum_probs=14.8
Q ss_pred CEEEEcCCCCChhHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve 427 (874)
.+.|.||||+||||+.-.
T Consensus 11 ~i~i~G~~GsGKsTla~~ 28 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRG 28 (233)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999976544
No 356
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=82.47 E-value=1.1 Score=48.43 Aligned_cols=36 Identities=22% Similarity=0.265 Sum_probs=28.8
Q ss_pred CCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecC
Q 002841 409 PPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAP 446 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~Ap 446 (874)
...++.|.+|.||||+.+..+..+.+ .+.|+|++.-
T Consensus 20 ~i~v~sgkGGvGKTTva~~LA~~lA~--~G~rVllvD~ 55 (329)
T 2woo_A 20 KWIFVGGKGGVGKTTTSCSLAIQMSK--VRSSVLLIST 55 (329)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHT--SSSCEEEEEC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH--CCCeEEEEEC
Confidence 35678899999999999988877775 4678888754
No 357
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=82.36 E-value=0.61 Score=46.43 Aligned_cols=17 Identities=29% Similarity=0.173 Sum_probs=14.1
Q ss_pred CEEEEcCCCCChhHHHH
Q 002841 410 PYLIYGPPGTGKTMTLV 426 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlv 426 (874)
.+.|.||+|+||||.+.
T Consensus 23 ~i~i~G~~GsGKSTl~~ 39 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAK 39 (207)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36799999999998654
No 358
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=82.35 E-value=0.77 Score=45.57 Aligned_cols=24 Identities=33% Similarity=0.628 Sum_probs=18.4
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLYA 434 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll~ 434 (874)
.+.|.||+|+||||++..++ .++.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~-g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKAS-EVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHH-HHHH
T ss_pred EEEEECCCCChHHHHHHHHH-hhcc
Confidence 47899999999999876544 4444
No 359
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=82.24 E-value=4.4 Score=43.58 Aligned_cols=73 Identities=18% Similarity=0.250 Sum_probs=45.9
Q ss_pred ecCCeEEEEEEEEcCCCccEEEeeecccCCCCceEEEEecCCCCCCCCCCCCcccee--eecccce-eeCCCCeEEEEEE
Q 002841 58 SVGETAVDSITIKNTTREPVELWSKIYASTPENTFTLSVMKPPSPGSDSGTNRGFVE--FFTLEER-MIQPGQTLTIWLS 134 (874)
Q Consensus 58 ~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~g~~~~~~~~ 134 (874)
-.|.+-.+++.|.|+|++||.|-....+. ++-+++-....+.+.-...+. -.++++. -|.|||+-++.|+
T Consensus 261 vpgR~l~~~~~VtN~g~~pvrlgeF~tA~-------vrFln~~~~~~~~~~P~~lla~~gL~vsd~~pI~PGETr~~~v~ 333 (382)
T 1yew_A 261 VPGRAMRMKLTITNHGNSPIRLGEFYTAS-------VRFLDSDVYKDTTGYPEDLLAEDGLSVSDNSPLAPGETRTVDVT 333 (382)
T ss_dssp SSCSEEEEEEEEEECSSSCEEEEEEECSS-------CEEECTTTCCCCSCCCGGGEETTCEEESCCSCBCTTCEEEEEEE
T ss_pred cCCcEEEEEEEEEcCCCCceEeeeEEecc-------EEEeCCcccccCCCChHHhhccCCceeCCCCCcCCCceeEEEEE
Confidence 37889999999999999999999833332 222322111111111122221 2355554 4999999999999
Q ss_pred Eec
Q 002841 135 CKP 137 (874)
Q Consensus 135 ~~~ 137 (874)
++.
T Consensus 334 a~d 336 (382)
T 1yew_A 334 ASD 336 (382)
T ss_dssp EEC
T ss_pred eeh
Confidence 984
No 360
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=82.13 E-value=1.2 Score=48.67 Aligned_cols=36 Identities=28% Similarity=0.237 Sum_probs=26.1
Q ss_pred CCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecC
Q 002841 409 PPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAP 446 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~Ap 446 (874)
+.+.|.|+||+||||++-.++..+.. .+.+|.|.+.
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~~~--~~~~v~V~~~ 110 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKMLTE--RGHKLSVLAV 110 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhhh--cCCeEEEEee
Confidence 45789999999999988766654443 3467777664
No 361
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=82.09 E-value=0.68 Score=46.39 Aligned_cols=21 Identities=14% Similarity=0.374 Sum_probs=16.6
Q ss_pred CCEEEEcCCCCChhHHHHHHH
Q 002841 409 PPYLIYGPPGTGKTMTLVEAI 429 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I 429 (874)
.+++|.||+|+||||.+..++
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~ 40 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALL 40 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHH
Confidence 368999999999998765433
No 362
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=82.07 E-value=0.78 Score=47.99 Aligned_cols=35 Identities=23% Similarity=0.448 Sum_probs=23.8
Q ss_pred CCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEe
Q 002841 409 PPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVC 444 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ 444 (874)
..++|.||.|+||||++..++ .++......+|++.
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~-g~~~~~~~G~I~~~ 60 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMI-DYINQTKSYHIITI 60 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHH-HHHHHHCCCEEEEE
T ss_pred CEEEEECCCCccHHHHHHHHH-HhCCCCCCCEEEEc
Confidence 468999999999999876544 44432224566654
No 363
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=81.98 E-value=0.73 Score=50.87 Aligned_cols=35 Identities=23% Similarity=0.401 Sum_probs=24.2
Q ss_pred CCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEe
Q 002841 409 PPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVC 444 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ 444 (874)
..++|.||.|+||||++..++. ++......+|++.
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~-~~~~~~~g~I~~~ 171 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMID-YINQTKSYHIITI 171 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHH-HHHHHSCCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHh-hcCcCCCcEEEEe
Confidence 3589999999999998876554 4432224566553
No 364
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=81.97 E-value=0.62 Score=50.39 Aligned_cols=21 Identities=24% Similarity=0.350 Sum_probs=16.7
Q ss_pred CEEEEcCCCCChhHHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAIL 430 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~ 430 (874)
.++|.||+|||||+....++.
T Consensus 7 ~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999987655443
No 365
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=81.78 E-value=1.2 Score=48.37 Aligned_cols=48 Identities=27% Similarity=0.236 Sum_probs=29.6
Q ss_pred HHHHHHh-ccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecC
Q 002841 397 CSIEKIL-GLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAP 446 (874)
Q Consensus 397 ~AV~~il-~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~Ap 446 (874)
.++..+- .-.....+.|.||||+||||++-.++. ++.. .+.+|.+.+.
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g-~~~~-~~g~v~i~~~ 91 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS-LLTA-AGHKVAVLAV 91 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH-HHHH-TTCCEEEEEE
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHH-hhhh-CCCEEEEEEE
Confidence 4555443 222224578999999999988765444 3332 3567777664
No 366
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=81.66 E-value=1.1 Score=49.16 Aligned_cols=39 Identities=18% Similarity=0.297 Sum_probs=29.9
Q ss_pred CCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCC
Q 002841 409 PPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPS 447 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApS 447 (874)
...++.|-+|.||||+.+..+..+.....+.|||++..-
T Consensus 19 ~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D 57 (354)
T 2woj_A 19 KWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTD 57 (354)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 346788999999999999988877621257888887664
No 367
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=81.38 E-value=0.99 Score=49.38 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=16.6
Q ss_pred CEEEEcCCCCChhHHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAIL 430 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~ 430 (874)
.++|.||||+||||+...++.
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 378999999999987654443
No 368
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=81.32 E-value=1.7 Score=46.89 Aligned_cols=36 Identities=19% Similarity=0.166 Sum_probs=23.6
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHHHhcC-CCeEEEecC
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLYATRE-DARLLVCAP 446 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll~~~~-~~rILv~Ap 446 (874)
.+.|.||+|+||||++ ..+..++...+ ..++.++..
T Consensus 94 iigI~GpsGSGKSTl~-~~L~~ll~~~~~~~~v~~i~~ 130 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTS-RVLKALLSRWPDHPNVEVITT 130 (321)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHHHTTSTTCCCEEEEEG
T ss_pred EEEEECCCCCCHHHHH-HHHHHHhcccCCCCeEEEEee
Confidence 3579999999999876 45666664322 335555554
No 369
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=81.24 E-value=0.74 Score=45.31 Aligned_cols=18 Identities=28% Similarity=0.231 Sum_probs=14.7
Q ss_pred CEEEEcCCCCChhHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve 427 (874)
.+.|.|++||||||+...
T Consensus 10 ~I~i~G~~GsGKST~~~~ 27 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAAL 27 (203)
T ss_dssp EEEEEECTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 368999999999986543
No 370
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=81.08 E-value=0.92 Score=45.12 Aligned_cols=19 Identities=26% Similarity=0.181 Sum_probs=15.1
Q ss_pred CEEEEcCCCCChhHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEA 428 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~ 428 (874)
.+.|.|++||||||+....
T Consensus 14 iIgltG~~GSGKSTva~~L 32 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEIL 32 (192)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4679999999999875443
No 371
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=81.08 E-value=0.87 Score=50.78 Aligned_cols=39 Identities=13% Similarity=0.082 Sum_probs=25.3
Q ss_pred CCEEEEcCCCCChhHHHHHHHHHHHHhc----CCCeEEEecCC
Q 002841 409 PPYLIYGPPGTGKTMTLVEAILQLYATR----EDARLLVCAPS 447 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I~~ll~~~----~~~rILv~ApS 447 (874)
..+.|.||||+|||+.+..++...+... .+.+++++...
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence 3689999999999998876554433211 23456655543
No 372
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=81.01 E-value=1.8 Score=44.32 Aligned_cols=24 Identities=29% Similarity=0.127 Sum_probs=15.4
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLY 433 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll 433 (874)
.++|.||+|+||||.+..+...+-
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999987766554443
No 373
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=80.55 E-value=1 Score=46.80 Aligned_cols=21 Identities=24% Similarity=0.197 Sum_probs=16.6
Q ss_pred CCEEEEcCCCCChhHHHHHHH
Q 002841 409 PPYLIYGPPGTGKTMTLVEAI 429 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I 429 (874)
..++|.|++|+||||++..+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La 69 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMA 69 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 468999999999998755433
No 374
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=80.54 E-value=0.91 Score=45.20 Aligned_cols=23 Identities=26% Similarity=0.203 Sum_probs=17.1
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLY 433 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll 433 (874)
.+.|.||.||||||++- .+..++
T Consensus 8 ~i~i~G~~GsGKSTl~~-~l~~~~ 30 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQ-ALARTL 30 (211)
T ss_dssp EEEEEESTTSSHHHHHH-HHHHHH
T ss_pred EEEEECCCCCCHHHHHH-HHHHHh
Confidence 46799999999998654 444444
No 375
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=80.36 E-value=0.7 Score=56.85 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=17.3
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLY 433 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll 433 (874)
+++|.||||||||+++. ++...+
T Consensus 590 ~vLl~Gp~GtGKT~lA~-~la~~~ 612 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAK-TLAATL 612 (854)
T ss_dssp EEEEBSCSSSSHHHHHH-HHHHHH
T ss_pred EEEEECCCCCCHHHHHH-HHHHHh
Confidence 68999999999997654 444433
No 376
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=80.30 E-value=1.5 Score=45.78 Aligned_cols=48 Identities=6% Similarity=-0.058 Sum_probs=34.1
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHhc
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILG 460 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~~ 460 (874)
.++|.|+||||||+...+.+..-++ .+.+.+++++.-... .+.++...
T Consensus 23 ~~li~g~p~~~~~~l~~qfl~~g~~--~Ge~~~~~~~~e~~~-~l~~~~~~ 70 (260)
T 3bs4_A 23 ILIHEEDASSRGKDILFYILSRKLK--SDNLVGMFSISYPLQ-LIIRILSR 70 (260)
T ss_dssp EEEEECSGGGCHHHHHHHHHHHHHH--TTCEEEEEECSSCHH-HHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHHHHHH--CCCcEEEEEEeCCHH-HHHHHHHH
Confidence 4799999999999665665555554 578999999965544 45555543
No 377
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=80.02 E-value=1 Score=58.77 Aligned_cols=48 Identities=21% Similarity=0.241 Sum_probs=35.8
Q ss_pred CCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHH
Q 002841 409 PPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKI 458 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL 458 (874)
..++|.||||+|||+.+.+.+....+ .+.++++.+.-.+.....++++
T Consensus 384 ~lilI~G~pGsGKTtLaLq~a~~~~~--~G~~vlyis~E~s~~~~~a~~l 431 (1706)
T 3cmw_A 384 RIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHALDPIYARKL 431 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEECTTSCCCHHHHHHT
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHH--hCCCeEEEEccCchHHHHHHHc
Confidence 35899999999999999998888775 3567787777665554444443
No 378
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=80.01 E-value=1.4 Score=47.86 Aligned_cols=35 Identities=29% Similarity=0.319 Sum_probs=24.7
Q ss_pred CCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEec
Q 002841 409 PPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCA 445 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~A 445 (874)
..+.|.|+||+||||++..++..+.. .+.+|.++.
T Consensus 57 ~~i~i~G~~g~GKSTl~~~l~~~~~~--~~~~v~v~~ 91 (341)
T 2p67_A 57 LRLGVTGTPGAGKSTFLEAFGMLLIR--EGLKVAVIA 91 (341)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHH--TTCCEEEEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHh--cCCeEEEEe
Confidence 35789999999999988766655443 345666554
No 379
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=79.82 E-value=0.65 Score=47.23 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=11.7
Q ss_pred CCEEEEcCCCCChhHHHHH
Q 002841 409 PPYLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve 427 (874)
..+.|.||.|+||||++..
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~ 46 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANK 46 (231)
T ss_dssp CEEEEECSCC----CHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 3578999999999987654
No 380
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=79.82 E-value=0.94 Score=45.81 Aligned_cols=19 Identities=37% Similarity=0.704 Sum_probs=16.0
Q ss_pred CCEEEEcCCCCChhHHHHH
Q 002841 409 PPYLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve 427 (874)
..+.|.||.|+||||++-.
T Consensus 24 ~~~~lvGpsGsGKSTLl~~ 42 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKK 42 (218)
T ss_dssp CCEEEECSTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 4689999999999987654
No 381
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=79.78 E-value=0.88 Score=46.26 Aligned_cols=33 Identities=18% Similarity=0.247 Sum_probs=26.0
Q ss_pred EEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecC
Q 002841 412 LIYGPPGTGKTMTLVEAILQLYATREDARLLVCAP 446 (874)
Q Consensus 412 lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~Ap 446 (874)
.|.|.+|+||||+.+.++..+.+ .+.|||++=.
T Consensus 4 ~vs~kGGvGKTt~a~~LA~~la~--~g~~VlliD~ 36 (254)
T 3kjh_A 4 AVAGKGGVGKTTVAAGLIKIMAS--DYDKIYAVDG 36 (254)
T ss_dssp EEECSSSHHHHHHHHHHHHHHTT--TCSCEEEEEE
T ss_pred EEecCCCCCHHHHHHHHHHHHHH--CCCeEEEEeC
Confidence 45899999999999988877765 4578888743
No 382
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=79.77 E-value=0.94 Score=45.44 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=14.8
Q ss_pred CEEEEcCCCCChhHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve 427 (874)
.+.|.|++||||||++..
T Consensus 6 ~I~i~G~~GSGKST~~~~ 23 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANA 23 (218)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 468999999999986543
No 383
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=79.66 E-value=1.4 Score=51.52 Aligned_cols=36 Identities=22% Similarity=0.358 Sum_probs=29.8
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCC
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPS 447 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApS 447 (874)
.+++.|.+|+||||+.+..+..+.+ .+.|+|++...
T Consensus 10 i~~~sgkGGvGKTT~a~~lA~~lA~--~G~rVLlvd~D 45 (589)
T 1ihu_A 10 YLFFTGKGGVGKTSISCATAIRLAE--QGKRVLLVSTD 45 (589)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEECC
T ss_pred EEEEeCCCcCHHHHHHHHHHHHHHH--CCCcEEEEECC
Confidence 5789999999999999998888776 46788887654
No 384
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=79.55 E-value=2.2 Score=47.88 Aligned_cols=34 Identities=29% Similarity=0.413 Sum_probs=25.3
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEec
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCA 445 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~A 445 (874)
.++|.|++|+||||++..++..+.. .+.+|++..
T Consensus 100 vi~i~G~~GsGKTT~~~~LA~~l~~--~g~~Vllvd 133 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVA 133 (425)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEee
Confidence 3667899999999998887766543 356776655
No 385
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=79.47 E-value=1.5 Score=46.66 Aligned_cols=33 Identities=24% Similarity=0.369 Sum_probs=26.2
Q ss_pred EEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEec
Q 002841 411 YLIYGPPGTGKTMTLVEAILQLYATREDARLLVCA 445 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~A 445 (874)
+.|.|-.|+||||+.+.++..+.+ .+.+||++=
T Consensus 44 I~v~~KGGvGKTT~a~nLA~~La~--~G~~VlliD 76 (307)
T 3end_A 44 FAVYGKGGIGKSTTSSNLSAAFSI--LGKRVLQIG 76 (307)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEE
T ss_pred EEEECCCCccHHHHHHHHHHHHHH--CCCeEEEEe
Confidence 455699999999999998887776 367887763
No 386
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=79.14 E-value=2.2 Score=45.19 Aligned_cols=34 Identities=15% Similarity=0.219 Sum_probs=25.2
Q ss_pred EEEE-cCCCCChhHHHHHHHHHHHHhcCCCeEEEecC
Q 002841 411 YLIY-GPPGTGKTMTLVEAILQLYATREDARLLVCAP 446 (874)
Q Consensus 411 ~lI~-GPPGTGKT~Tlve~I~~ll~~~~~~rILv~Ap 446 (874)
++|. +-||.|||++.+.++..+.+ .+.+||++-.
T Consensus 95 I~vts~kgG~GKTtva~nLA~~lA~--~G~rVLLID~ 129 (286)
T 3la6_A 95 LMMTGVSPSIGMTFVCANLAAVISQ--TNKRVLLIDC 129 (286)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHHHT--TTCCEEEEEC
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHh--CCCCEEEEec
Confidence 4444 45999999999988877765 4678887743
No 387
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=78.96 E-value=1 Score=46.31 Aligned_cols=19 Identities=26% Similarity=0.443 Sum_probs=14.9
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 002841 411 YLIYGPPGTGKTMTLVEAI 429 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve~I 429 (874)
.-|.||||+||||....++
T Consensus 11 ~~~~G~pGsGKsT~a~~L~ 29 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIK 29 (230)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred eeeECCCCCCHHHHHHHHH
Confidence 5799999999998655433
No 388
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=78.93 E-value=1.2 Score=58.27 Aligned_cols=47 Identities=21% Similarity=0.253 Sum_probs=35.2
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKI 458 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL 458 (874)
.++|.||||+|||+.+...+..+.. .+.++++.+.-.+....+++++
T Consensus 734 lVlI~G~PG~GKTtLal~lA~~aa~--~g~~VlyiS~Ees~~ql~A~~l 780 (1706)
T 3cmw_A 734 IVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHALDPIYARKL 780 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEECTTSCCCHHHHHHT
T ss_pred eEEEECCCCCCcHHHHHHHHHHHHH--cCCCeEEEeccchHHHHHHHHc
Confidence 5899999999999999888887765 4568888877665544443333
No 389
>1so9_A Cytochrome C oxidase assembly protein CTAG; immunoglobulin-like fold, copper protein, structural proteomics in europe, spine; NMR {Sinorhizobium meliloti} SCOP: b.146.1.1 PDB: 1sp0_A
Probab=78.64 E-value=2.2 Score=40.97 Aligned_cols=80 Identities=24% Similarity=0.412 Sum_probs=58.1
Q ss_pred eeecCCeEEEEEEEEcCCCccEEEeeecccCCCCceEEEEecCCCCCCCCCCCCccceeeecccceeeCCCCeEEEEEEE
Q 002841 56 SVSVGETAVDSITIKNTTREPVELWSKIYASTPENTFTLSVMKPPSPGSDSGTNRGFVEFFTLEERMIQPGQTLTIWLSC 135 (874)
Q Consensus 56 ~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 135 (874)
.|..||+..+-..++|.+++++.-.. . |.+ . | ......-+.++||+.+.-.|.|||+...=|.|
T Consensus 57 ~V~pGE~~~~~y~a~N~sd~~i~G~A-~--------ynV---~-P---~~a~~YF~KieCFCF~eQ~L~pgE~~~MPV~F 120 (164)
T 1so9_A 57 DVRIGETVQIMYRAKNLASTPTTGQA-T--------FNV---T-P---MAAGAYFNKVQCFCFTETTLEPGEEMEMPVVF 120 (164)
T ss_dssp EECTTCCCCEEEEEEECSSSCEECCC-E--------EEE---C-S---SSCSTTBTTSCCSSCSCCEECTTCEEEEEECC
T ss_pred EEcCCCeEEEEEEEECCCCCcEEEEE-C--------cee---C-H---HHHhhhccceeeEcccCcccCCCCeEeeeEEE
Confidence 45799999999999999999997666 2 222 1 1 34445677899999999999999997665544
Q ss_pred --ecCcc------ceEeEEEEEEc
Q 002841 136 --KPKGI------GLHTTVLQFDV 151 (874)
Q Consensus 136 --~~~~~------g~~~~~~~f~~ 151 (874)
.+.+. +...-|+.+.|
T Consensus 121 ~IDP~i~~D~~~~~v~tITLSYTF 144 (164)
T 1so9_A 121 FVDPEIVKPVETQGIKTLTLSYTF 144 (164)
T ss_dssp CBCGGGGSSTTTTTCCBCCEEEEE
T ss_pred EECCCcCCCcccCCCCEEEEEEEE
Confidence 46666 45555555554
No 390
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=78.60 E-value=1.7 Score=45.66 Aligned_cols=32 Identities=25% Similarity=0.441 Sum_probs=25.7
Q ss_pred EEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEe
Q 002841 411 YLIYGPPGTGKTMTLVEAILQLYATREDARLLVC 444 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ 444 (874)
+.|.|.+|+||||+.+.++..+.+ .+.+||++
T Consensus 5 Iavs~KGGvGKTT~a~nLA~~La~--~G~rVlli 36 (289)
T 2afh_E 5 CAIYGKGGIGKSTTTQNLVAALAE--MGKKVMIV 36 (289)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHH--TTCCEEEE
T ss_pred EEEeCCCcCcHHHHHHHHHHHHHH--CCCeEEEE
Confidence 345789999999999998888775 36788875
No 391
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=78.42 E-value=1.6 Score=45.14 Aligned_cols=32 Identities=31% Similarity=0.387 Sum_probs=25.3
Q ss_pred EEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEe
Q 002841 411 YLIYGPPGTGKTMTLVEAILQLYATREDARLLVC 444 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ 444 (874)
+.|.|..|+||||+.+.++..+.+ .+.+||++
T Consensus 4 I~vs~KGGvGKTT~a~nLA~~la~--~G~~Vlli 35 (269)
T 1cp2_A 4 VAIYGKGGIGKSTTTQNLTSGLHA--MGKTIMVV 35 (269)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHT--TTCCEEEE
T ss_pred EEEecCCCCcHHHHHHHHHHHHHH--CCCcEEEE
Confidence 345789999999999998877764 46788874
No 392
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=78.36 E-value=0.95 Score=47.81 Aligned_cols=20 Identities=20% Similarity=0.194 Sum_probs=15.8
Q ss_pred CEEEEcCCCCChhHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAI 429 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I 429 (874)
.+.|.|+|||||||++..+.
T Consensus 77 iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36899999999998765443
No 393
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=78.34 E-value=0.94 Score=49.51 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=18.2
Q ss_pred CEEEEcCCCCChhHHHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQ 431 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ 431 (874)
.+.|.||||||||+.+..++..
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999987665544
No 394
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=78.28 E-value=1.7 Score=49.98 Aligned_cols=40 Identities=23% Similarity=0.484 Sum_probs=30.3
Q ss_pred CCEEEEcCCCCChhHHHHHHHHHHHHhcCC--CeEEEecCCH
Q 002841 409 PPYLIYGPPGTGKTMTLVEAILQLYATRED--ARLLVCAPSN 448 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~--~rILv~ApSN 448 (874)
++.+|.|++|||||+.+-.++..++....+ -++.++=|.+
T Consensus 168 pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~ 209 (512)
T 2ius_A 168 PHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM 209 (512)
T ss_dssp CSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch
Confidence 679999999999999999888887764422 3566665543
No 395
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=77.94 E-value=1.1 Score=46.46 Aligned_cols=19 Identities=26% Similarity=0.364 Sum_probs=15.3
Q ss_pred CEEEEcCCCCChhHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEA 428 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~ 428 (874)
.+.|.||+||||||++-.+
T Consensus 29 ~I~I~G~~GsGKSTl~k~L 47 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKAL 47 (252)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999865443
No 396
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=77.85 E-value=1.1 Score=48.83 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=16.8
Q ss_pred CEEEEcCCCCChhHHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAIL 430 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~ 430 (874)
.++|.||+|||||+....++.
T Consensus 9 lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHHHHH
Confidence 478999999999987665444
No 397
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=77.70 E-value=1.2 Score=60.71 Aligned_cols=43 Identities=26% Similarity=0.365 Sum_probs=26.6
Q ss_pred HHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecC
Q 002841 398 SIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAP 446 (874)
Q Consensus 398 AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~Ap 446 (874)
.+...+... .|+++.||||||||+++...+.. .++..+..+.+
T Consensus 1259 ll~~~l~~~--~~vLL~GPpGtGKT~la~~~l~~----~~~~~~~~inf 1301 (2695)
T 4akg_A 1259 IFYDLLNSK--RGIILCGPPGSGKTMIMNNALRN----SSLYDVVGINF 1301 (2695)
T ss_dssp HHHHHHHHT--CEEEEECSTTSSHHHHHHHHHHS----CSSCEEEEEEC
T ss_pred HHHHHHHCC--CeEEEECCCCCCHHHHHHHHHhc----CCCCceEEEEe
Confidence 344445432 46999999999999986554432 33444444433
No 398
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=77.61 E-value=1.3 Score=45.09 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=14.9
Q ss_pred CEEEEcCCCCChhHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve 427 (874)
.+.|.|++||||||+...
T Consensus 18 ~i~i~G~~gsGKst~~~~ 35 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKI 35 (236)
T ss_dssp EEEEECSSCSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 468999999999987554
No 399
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=77.51 E-value=1.2 Score=44.50 Aligned_cols=19 Identities=21% Similarity=0.378 Sum_probs=15.7
Q ss_pred CCEEEEcCCCCChhHHHHH
Q 002841 409 PPYLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve 427 (874)
..+.|.||.|+||||++-.
T Consensus 21 ei~~l~GpnGsGKSTLl~~ 39 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRC 39 (207)
T ss_dssp CEEEEECSTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 3688999999999987643
No 400
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=77.50 E-value=1.9 Score=49.82 Aligned_cols=47 Identities=28% Similarity=0.348 Sum_probs=30.9
Q ss_pred CCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHH
Q 002841 409 PPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKI 458 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL 458 (874)
..++|.|||||||||.+...+..+.. .+.+++..++-+.. ..+..++
T Consensus 282 ~i~~i~G~~GsGKSTLl~~l~g~~~~--~G~~vi~~~~ee~~-~~l~~~~ 328 (525)
T 1tf7_A 282 SIILATGATGTGKTLLVSRFVENACA--NKERAILFAYEESR-AQLLRNA 328 (525)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHT--TTCCEEEEESSSCH-HHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHh--CCCCEEEEEEeCCH-HHHHHHH
Confidence 35899999999999987765544432 35567777765543 2444444
No 401
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=77.48 E-value=0.82 Score=55.80 Aligned_cols=23 Identities=48% Similarity=0.788 Sum_probs=17.0
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLY 433 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll 433 (874)
.+++.||||||||+++ .+++..+
T Consensus 513 ~vLL~GppGtGKT~La-kala~~~ 535 (806)
T 1ypw_A 513 GVLFYGPPGCGKTLLA-KAIANEC 535 (806)
T ss_dssp CCCCBCCTTSSHHHHH-HHHHHHH
T ss_pred eeEEECCCCCCHHHHH-HHHHHHh
Confidence 4899999999999854 4444433
No 402
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=77.40 E-value=2.2 Score=42.67 Aligned_cols=34 Identities=18% Similarity=0.145 Sum_probs=25.9
Q ss_pred EEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecC
Q 002841 411 YLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAP 446 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~Ap 446 (874)
++..+-+|+||||+.+.++..+.+ .+.|||++=|
T Consensus 5 ~v~s~kgGvGKTt~a~nLa~~la~--~G~rVll~dp 38 (224)
T 1byi_A 5 FVTGTDTEVGKTVASCALLQAAKA--AGYRTAGYKP 38 (224)
T ss_dssp EEEESSTTSCHHHHHHHHHHHHHH--TTCCEEEECS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH--CCCCEEEEcc
Confidence 345556999999999998887765 4678888643
No 403
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=77.24 E-value=1.6 Score=50.86 Aligned_cols=38 Identities=24% Similarity=0.250 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhcc--CCCCCEEEEcCCCCChhHHHHHHHH
Q 002841 393 EEQMCSIEKILGL--KGAPPYLIYGPPGTGKTMTLVEAIL 430 (874)
Q Consensus 393 ~~Q~~AV~~il~~--~~~~~~lI~GPPGTGKT~Tlve~I~ 430 (874)
+...+.+...+.. .+...+.|.||+|.|||+.+.+.+.
T Consensus 130 ~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 130 KKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp HHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 4555666666642 2234689999999999998877654
No 404
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=77.17 E-value=1.3 Score=48.27 Aligned_cols=35 Identities=20% Similarity=0.166 Sum_probs=24.6
Q ss_pred HHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHH
Q 002841 396 MCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAIL 430 (874)
Q Consensus 396 ~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~ 430 (874)
..||..++.-.....+.|.||+|+||||++..++.
T Consensus 59 ~~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g 93 (347)
T 2obl_A 59 VRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICN 93 (347)
T ss_dssp CHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEeeeeecCCCEEEEECCCCCCHHHHHHHHhc
Confidence 46888876432224689999999999998654333
No 405
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=77.00 E-value=2.9 Score=42.62 Aligned_cols=45 Identities=18% Similarity=0.073 Sum_probs=26.2
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEE--ecCCHHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLYATREDARLLV--CAPSNSAADHLL 455 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv--~ApSNsAaD~l~ 455 (874)
.++|.|++|+||||.+..+...+-. ..+..+.+ --|.........
T Consensus 23 ~i~~~G~~g~GKst~~~~l~~~l~~-~~g~~v~~~treP~~t~~g~~i 69 (223)
T 3ld9_A 23 FITFEGIDGSGKTTQSHLLAEYLSE-IYGVNNVVLTREPGGTLLNESV 69 (223)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH-HHCGGGEEEEESSCSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhh-ccCceeeEeeeCCCCChHHHHH
Confidence 5678999999999876655544433 02334444 345544443333
No 406
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=77.00 E-value=1.5 Score=47.23 Aligned_cols=34 Identities=24% Similarity=0.260 Sum_probs=24.8
Q ss_pred CCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecC
Q 002841 409 PPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAP 446 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~Ap 446 (874)
+.++|.|+-|+||||.+-.+ +...++.+|.|+.+
T Consensus 5 ~v~~i~G~~GaGKTTll~~l----~~~~~~~~~aVi~~ 38 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHI----LNEQHGYKIAVIEN 38 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHH----HHSCCCCCEEEECS
T ss_pred cEEEEEecCCCCHHHHHHHH----HhhcCCCcEEEEEe
Confidence 45799999999999976543 33335677877776
No 407
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=76.92 E-value=2.2 Score=45.87 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=29.2
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecC
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAP 446 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~Ap 446 (874)
.+-|.|--|.|||||.+.++..|.+ .++|||++=.
T Consensus 50 VIAIaGKGGVGKTTtavNLA~aLA~--~GkkVllID~ 84 (314)
T 3fwy_A 50 VFAVYGKGGIGKSTTSSNLSAAFSI--LGKRVLQIGC 84 (314)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEEE
T ss_pred EEEEECCCccCHHHHHHHHHHHHHH--CCCeEEEEec
Confidence 4678899999999999999988876 4678888753
No 408
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=76.83 E-value=0.81 Score=51.29 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=15.3
Q ss_pred CCEEEEcCCCCChhHHHHH
Q 002841 409 PPYLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve 427 (874)
..++|.|+|||||||.+..
T Consensus 259 ~lIil~G~pGSGKSTla~~ 277 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQE 277 (416)
T ss_dssp CEEEEESCTTSSHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 3578999999999986544
No 409
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=76.54 E-value=1.1 Score=45.44 Aligned_cols=19 Identities=26% Similarity=0.618 Sum_probs=15.8
Q ss_pred CCEEEEcCCCCChhHHHHH
Q 002841 409 PPYLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve 427 (874)
.+++|.||.|+||||.+-.
T Consensus 17 ~ii~l~GpsGsGKSTLlk~ 35 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQA 35 (219)
T ss_dssp CEEEEECCTTSCHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 4689999999999987554
No 410
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=76.44 E-value=1.3 Score=44.19 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=15.0
Q ss_pred CEEEEcCCCCChhHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve 427 (874)
.+.|.|+|||||||+...
T Consensus 5 ~i~i~G~~gsGkst~~~~ 22 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKR 22 (219)
T ss_dssp CEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999986543
No 411
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=76.43 E-value=1.3 Score=43.35 Aligned_cols=20 Identities=30% Similarity=0.297 Sum_probs=17.3
Q ss_pred EEEEcCCCCChhHHHHHHHH
Q 002841 411 YLIYGPPGTGKTMTLVEAIL 430 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve~I~ 430 (874)
++|.|++|+||||+..+.+.
T Consensus 19 vli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 19 VLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEESSSSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 79999999999998776554
No 412
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=76.33 E-value=8.1 Score=41.97 Aligned_cols=71 Identities=20% Similarity=0.232 Sum_probs=44.4
Q ss_pred ecCCeEEEEEEEEcCCCccEEEeeecccCCCCceEEEEecCC---CCCCCCCCCCccceeeecccceeeCCCCeEEEEEE
Q 002841 58 SVGETAVDSITIKNTTREPVELWSKIYASTPENTFTLSVMKP---PSPGSDSGTNRGFVEFFTLEERMIQPGQTLTIWLS 134 (874)
Q Consensus 58 ~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 134 (874)
-.|.+-.+++.|.|+|++||.|-...+++ ++.+++ +.+....++...- +..+-.+ -|.|||+-++.|+
T Consensus 295 vpgR~l~~~~~VtN~g~~pvrlgeF~tA~-------vrFlnp~v~~~~~~~p~~l~a~-~GL~s~~-pI~PGETrt~~V~ 365 (419)
T 3rfr_A 295 VPGRELTINVKVKNGTSQPVRLGEYTAAG-------LRFLNPTVFTQKPDFPDYLLAD-RGLSNDD-VIAPGESKEIVVK 365 (419)
T ss_dssp SSSSEEEEEEEEECCSSSCBEEEEEECSS-------CEEECTTTCSSCCCCCTTTEES-CCCCCCC-CBCTTCEEEEEEE
T ss_pred cCCcEEEEEEEEecCCCCceEEeeEEEcc-------EEEeCcccccCCCCCchhhhhc-cCCCCCC-CcCCCcceEEEEE
Confidence 37889999999999999999998833332 222332 1111122211100 1123233 8999999999999
Q ss_pred Eec
Q 002841 135 CKP 137 (874)
Q Consensus 135 ~~~ 137 (874)
++-
T Consensus 366 a~d 368 (419)
T 3rfr_A 366 IQD 368 (419)
T ss_dssp EEC
T ss_pred eeh
Confidence 984
No 413
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=76.26 E-value=0.89 Score=49.40 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=17.2
Q ss_pred CEEEEcCCCCChhHHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAIL 430 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~ 430 (874)
.++|.||.|||||+...+++.
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999997765443
No 414
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=76.25 E-value=2.6 Score=47.83 Aligned_cols=63 Identities=13% Similarity=0.184 Sum_probs=36.5
Q ss_pred HHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeE-EEecCCHHHHHHHHHHHh
Q 002841 397 CSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARL-LVCAPSNSAADHLLEKIL 459 (874)
Q Consensus 397 ~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rI-Lv~ApSNsAaD~l~~rL~ 459 (874)
++|.....--...-.+|+||+|+|||+.+..++.+.......-.| ..+--...-+.++.+.+.
T Consensus 140 r~ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~~iGerttev~el~~~l~ 203 (473)
T 1sky_E 140 KVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGERTREGNDLYHEMK 203 (473)
T ss_dssp HHHHHHSCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEEEESSCHHHHHHHHHHHH
T ss_pred hHHHHHhhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEEEeeeccCchHHHHHHHHhh
Confidence 356555431111347999999999999998888776654333332 223333344445555554
No 415
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=76.19 E-value=1.5 Score=44.94 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=17.1
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLY 433 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll 433 (874)
.+-|.||.|+||||++-. +..++
T Consensus 27 iigI~G~~GsGKSTl~k~-L~~~l 49 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEK-IMELL 49 (245)
T ss_dssp EEEEECSTTSSHHHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHHHH-HHHHh
Confidence 467999999999987654 44443
No 416
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=76.08 E-value=18 Score=39.44 Aligned_cols=89 Identities=17% Similarity=0.206 Sum_probs=59.3
Q ss_pred CeEEec-cccCCCCcceeeecCCeEEEEEEEEcCCCccEEEeeecccCCCCceEEEEecCCCCCCCCCCCCccceeeecc
Q 002841 40 PVQISF-PFPFIDGKPQSVSVGETAVDSITIKNTTREPVELWSKIYASTPENTFTLSVMKPPSPGSDSGTNRGFVEFFTL 118 (874)
Q Consensus 40 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (874)
+|.|+. ..+|| .|..++...-+|+|.|+|.-|+.+-= .+++ ++......|+.-. -
T Consensus 29 ~v~v~~~~idFg-----~v~~~~~~~~~l~i~N~g~~pa~f~f---------------~~~~---~~~~~~~~wl~v~-p 84 (366)
T 3qis_A 29 SLELSRREFVFE-----NVKFRQLQKEKFQISNNGQVPCHFSF---------------IPKL---NDSQYCKPWLRAE-P 84 (366)
T ss_dssp CEEESCSEEEEE-----EECBTCCEEEEEEEEECSSSCEEEEE---------------ECCT---TCSSSSCTTEEEE-S
T ss_pred eEEEecCeEEee-----eeeeCCeEEEEEEEEecCCceEEEEE---------------EeCC---CCCCCCCCcEEEe-C
Confidence 455554 46677 78999999999999999999986532 1111 1112233343331 2
Q ss_pred cceeeCCCCeEEEEEEEecCc---------cceEeEEEEEEcc
Q 002841 119 EERMIQPGQTLTIWLSCKPKG---------IGLHTTVLQFDVE 152 (874)
Q Consensus 119 ~~~~~~~g~~~~~~~~~~~~~---------~g~~~~~~~f~~~ 152 (874)
...+|.||++.+|.|++..+. -......++..+.
T Consensus 85 ~~g~l~Pge~~~i~l~~~v~~~~~~~ln~g~~~l~diLvL~ve 127 (366)
T 3qis_A 85 FEGYLEPNETVDISLDVYVSKDSVTILNSGEDKIEDILVLHLD 127 (366)
T ss_dssp CEEEECTTCEEEEEEEECBCTTTHHHHHHTSSCSCEEEEEEET
T ss_pred CccEECCCCEEEEEEEEEECHHHHHHHhcCccccceEEEEEEe
Confidence 345899999999999998766 3345667777664
No 417
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=76.00 E-value=2.5 Score=43.56 Aligned_cols=33 Identities=21% Similarity=0.189 Sum_probs=26.5
Q ss_pred EEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEec
Q 002841 411 YLIYGPPGTGKTMTLVEAILQLYATREDARLLVCA 445 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~A 445 (874)
.+..+.+|+||||+.+.++..+.+ .+.+||++-
T Consensus 6 ~v~s~kgGvGKTt~a~~LA~~la~--~g~~VlliD 38 (263)
T 1hyq_A 6 TVASGKGGTGKTTITANLGVALAQ--LGHDVTIVD 38 (263)
T ss_dssp EEEESSSCSCHHHHHHHHHHHHHH--TTCCEEEEE
T ss_pred EEECCCCCCCHHHHHHHHHHHHHh--CCCcEEEEE
Confidence 466788999999999998877765 467888875
No 418
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=75.97 E-value=1.1 Score=48.06 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=16.9
Q ss_pred CEEEEcCCCCChhHHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAIL 430 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~ 430 (874)
.++|.||+|+|||+...+++.
T Consensus 12 ~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 478999999999987666543
No 419
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=75.57 E-value=2 Score=48.96 Aligned_cols=64 Identities=13% Similarity=0.215 Sum_probs=39.3
Q ss_pred HHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEE-EecCCHHHHHHHHHHHhc
Q 002841 397 CSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLL-VCAPSNSAADHLLEKILG 460 (874)
Q Consensus 397 ~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rIL-v~ApSNsAaD~l~~rL~~ 460 (874)
++|...+---...-..|+|++|+|||+.+.+++.+..+.+++..|. .|---..-+.++.+.+..
T Consensus 154 rvID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~iGER~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 154 KVVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKE 218 (498)
T ss_dssp TTHHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEEESCCSHHHHHHHHHHHH
T ss_pred eEeeeecccccCCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEEcccCcHHHHHHHHhhhc
Confidence 4555554321113479999999999999999888765543333332 233344455556666654
No 420
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=75.54 E-value=1.7 Score=49.19 Aligned_cols=64 Identities=13% Similarity=0.213 Sum_probs=40.3
Q ss_pred HHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCe-EEEecCCHHHHHHHHHHHhc
Q 002841 397 CSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDAR-LLVCAPSNSAADHLLEKILG 460 (874)
Q Consensus 397 ~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~r-ILv~ApSNsAaD~l~~rL~~ 460 (874)
++|...+.--...-..|+|++|+|||+.+.+++.+..+.+++-. +..|---..-+.++.+.+..
T Consensus 142 r~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~iGER~rEv~e~~~~~~~ 206 (482)
T 2ck3_D 142 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIE 206 (482)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEEESCCHHHHHHHHHHHHH
T ss_pred EEEecccccccCCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEEECCCcchHHHHHHHHhhh
Confidence 66666653111123799999999999999998887654333332 23344455566666666654
No 421
>2f1e_A Protein APAG; APAG protein, xanthomonas axonopodis PV.citri, structural genomics, unknown function; NMR {Xanthomonas axonopodis PV}
Probab=75.53 E-value=31 Score=31.71 Aligned_cols=92 Identities=14% Similarity=0.102 Sum_probs=53.0
Q ss_pred CCeEEeccccCCCCcceeeecCCeEEEEEEEEcCCCccEEEee-ecc-cCCCCceEEEEecCCCCCCCCCCCCccceeee
Q 002841 39 DPVQISFPFPFIDGKPQSVSVGETAVDSITIKNTTREPVELWS-KIY-ASTPENTFTLSVMKPPSPGSDSGTNRGFVEFF 116 (874)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (874)
.||.|+....|...+-..-..---..-+|+|+|.|++++.|.+ +.. ...... ..-++--
T Consensus 7 ~~I~V~V~~~y~~e~S~p~~~~y~faY~I~I~N~~~~~vQL~sRhW~Itd~~g~-------------------~~eV~G~ 67 (127)
T 2f1e_A 7 YRVEVEVSPRFLAHQSTPDEGRYAFAYSIRIQNAGAVPARLVARHWQITDGNGR-------------------TEQVDGE 67 (127)
T ss_dssp CCEEEEEEEEECSTTCBGGGTBEEEEEEEEEEECSSSCEEEEEEEEEEEETTSC-------------------EEEEEES
T ss_pred CCEEEEEEEEEchhhCCCcCCEEEEEEEEEEEeCCCCCEEEEeceEEEEeCCCC-------------------EEEEECC
Confidence 4888888877765442211111124669999999999999999 221 110101 1111111
Q ss_pred cc--cceeeCCCCeEEEEEEEe-cCccceEeEEEEE
Q 002841 117 TL--EERMIQPGQTLTIWLSCK-PKGIGLHTTVLQF 149 (874)
Q Consensus 117 ~~--~~~~~~~g~~~~~~~~~~-~~~~g~~~~~~~f 149 (874)
.+ +--.|.||+.++++=.|. ..-.|.-.-.+.|
T Consensus 68 GVVG~qP~L~PGe~f~YtSg~~L~tp~G~M~G~y~m 103 (127)
T 2f1e_A 68 GVVGEQPWLRPGEAFHYTSGVLLETEQGQMQGHYDM 103 (127)
T ss_dssp SBTTBCCEECTTCEEEEEEEEEESSSCEEEEEEEEE
T ss_pred CeecCCCcCCCCCceEEeCCcCcCCCcEEEEEEEEE
Confidence 11 223799999999986665 3445666555554
No 422
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=75.44 E-value=1.5 Score=57.99 Aligned_cols=47 Identities=21% Similarity=0.227 Sum_probs=37.0
Q ss_pred CCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHH
Q 002841 409 PPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEK 457 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~r 457 (874)
..++|.||||||||+.+...+.+..+ .+.+++.++......+..+++
T Consensus 1082 ~~vll~G~~GtGKT~la~~~~~ea~k--~Ge~~~Fit~ee~~~~L~a~~ 1128 (2050)
T 3cmu_A 1082 RIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHALDPIYARK 1128 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEECTTSCCCHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEEccccHHHHHHHH
Confidence 35899999999999999888887776 368899998877655555443
No 423
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=75.42 E-value=2 Score=42.29 Aligned_cols=33 Identities=18% Similarity=0.278 Sum_probs=25.3
Q ss_pred EEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecC
Q 002841 412 LIYGPPGTGKTMTLVEAILQLYATREDARLLVCAP 446 (874)
Q Consensus 412 lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~Ap 446 (874)
+..+-.|+||||+.+.++..+.+ .+.+||++-.
T Consensus 6 v~s~kgG~GKTt~a~~la~~la~--~g~~vlliD~ 38 (206)
T 4dzz_A 6 FLNPKGGSGKTTAVINIATALSR--SGYNIAVVDT 38 (206)
T ss_dssp ECCSSTTSSHHHHHHHHHHHHHH--TTCCEEEEEC
T ss_pred EEeCCCCccHHHHHHHHHHHHHH--CCCeEEEEEC
Confidence 44467999999999988887765 4678887754
No 424
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=75.38 E-value=1.5 Score=44.41 Aligned_cols=22 Identities=32% Similarity=0.156 Sum_probs=17.0
Q ss_pred CEEEEcCCCCChhHHHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQ 431 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ 431 (874)
.++|.|++|+||||.+..+...
T Consensus 7 ~i~~eG~~g~GKst~~~~l~~~ 28 (216)
T 3tmk_A 7 LILIEGLDRTGKTTQCNILYKK 28 (216)
T ss_dssp EEEEEECSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999876554433
No 425
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=75.32 E-value=2.2 Score=44.13 Aligned_cols=33 Identities=12% Similarity=0.193 Sum_probs=25.9
Q ss_pred EEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEec
Q 002841 411 YLIYGPPGTGKTMTLVEAILQLYATREDARLLVCA 445 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~A 445 (874)
.+..+-.|+||||+.+.++..+.+ .+.+||++=
T Consensus 22 ~v~s~kGGvGKTT~a~nLA~~la~--~G~~VlliD 54 (262)
T 2ph1_A 22 AVMSGKGGVGKSTVTALLAVHYAR--QGKKVGILD 54 (262)
T ss_dssp EEECSSSCTTHHHHHHHHHHHHHH--TTCCEEEEE
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHH--CCCeEEEEe
Confidence 455678999999999998887775 467888854
No 426
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=75.18 E-value=2.4 Score=45.51 Aligned_cols=36 Identities=19% Similarity=0.237 Sum_probs=23.5
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHHHhcCC-CeEEEecC
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLYATRED-ARLLVCAP 446 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll~~~~~-~rILv~Ap 446 (874)
.+.|.||+|+||||++ .++..++....+ .+|-++..
T Consensus 92 ivgI~G~sGsGKSTL~-~~L~gll~~~~G~~~v~~v~q 128 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTA-RVLQALLARWDHHPRVDLVTT 128 (312)
T ss_dssp EEEEECCTTSCHHHHH-HHHHHHHHTSTTCCCEEEEEG
T ss_pred EEEEECCCCchHHHHH-HHHHhhccccCCCCeEEEEec
Confidence 5779999999999875 455566653222 34555443
No 427
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=75.04 E-value=1.2 Score=47.83 Aligned_cols=21 Identities=38% Similarity=0.346 Sum_probs=16.9
Q ss_pred CEEEEcCCCCChhHHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAIL 430 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~ 430 (874)
.++|.||.|+|||+....++.
T Consensus 5 ~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 578999999999987665443
No 428
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=74.97 E-value=1.7 Score=46.23 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=17.7
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLYA 434 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll~ 434 (874)
.+.|.||+|+||||++. .+..++.
T Consensus 33 ii~I~G~sGsGKSTla~-~L~~~l~ 56 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSI-QIYNHLM 56 (290)
T ss_dssp EEEEECCTTSSHHHHHH-HHHHHHH
T ss_pred EEEEECCCCCCHHHHHH-HHHHHhh
Confidence 46799999999998754 4555554
No 429
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=74.88 E-value=2.2 Score=45.61 Aligned_cols=34 Identities=24% Similarity=0.247 Sum_probs=22.3
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHHHh-cCCCeEEEe
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLYAT-REDARLLVC 444 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll~~-~~~~rILv~ 444 (874)
.+.|.||+|+||||++. ++..++.. .....|.++
T Consensus 82 iigI~G~~GsGKSTl~~-~L~~~l~~~~~~G~i~vi 116 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTAR-VLQALLSRWPEHRRVELI 116 (308)
T ss_dssp EEEEEECTTSSHHHHHH-HHHHHHTTSTTCCCEEEE
T ss_pred EEEEECCCCCCHHHHHH-HHHHHHhhCCCCCeEEEE
Confidence 47799999999998764 45555531 123456663
No 430
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=74.59 E-value=2.5 Score=49.15 Aligned_cols=40 Identities=28% Similarity=0.556 Sum_probs=32.5
Q ss_pred CCEEEEcCCCCChhHHHHHHHHHHHHhcC--CCeEEEecCCH
Q 002841 409 PPYLIYGPPGTGKTMTLVEAILQLYATRE--DARLLVCAPSN 448 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I~~ll~~~~--~~rILv~ApSN 448 (874)
+..+|.|.+|||||+.+..+|..++.... .-+++++=|..
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 67999999999999999999999886543 24677777765
No 431
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=74.33 E-value=2.5 Score=43.32 Aligned_cols=33 Identities=21% Similarity=0.246 Sum_probs=25.6
Q ss_pred EEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEec
Q 002841 411 YLIYGPPGTGKTMTLVEAILQLYATREDARLLVCA 445 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~A 445 (874)
.+..+-.|+||||+.+.++..+.+ .+.+||++=
T Consensus 6 ~v~s~kgGvGKTt~a~~LA~~la~--~g~~VlliD 38 (260)
T 3q9l_A 6 VVTSGKGGVGKTTSSAAIATGLAQ--KGKKTVVID 38 (260)
T ss_dssp EEECSSTTSSHHHHHHHHHHHHHH--TTCCEEEEE
T ss_pred EEECCCCCCcHHHHHHHHHHHHHh--CCCcEEEEE
Confidence 345667999999999998887775 467888853
No 432
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=73.97 E-value=2.4 Score=48.93 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=18.1
Q ss_pred CEEEEcCCCCChhHHHHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQL 432 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~l 432 (874)
.+++.|+||+||||+...++..+
T Consensus 37 lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 37 VIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999776655544
No 433
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=73.97 E-value=2.6 Score=42.53 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=25.9
Q ss_pred EEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecC
Q 002841 411 YLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAP 446 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~Ap 446 (874)
.+..+.+|+||||+.+.++..+.+ .+.+||++-.
T Consensus 6 ~v~s~kgGvGKTt~a~~LA~~la~--~g~~VlliD~ 39 (237)
T 1g3q_A 6 SIVSGKGGTGKTTVTANLSVALGD--RGRKVLAVDG 39 (237)
T ss_dssp EEECSSTTSSHHHHHHHHHHHHHH--TTCCEEEEEC
T ss_pred EEecCCCCCCHHHHHHHHHHHHHh--cCCeEEEEeC
Confidence 345567999999999998877765 3678887654
No 434
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=73.68 E-value=6.3 Score=47.05 Aligned_cols=61 Identities=13% Similarity=0.003 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCCHHHHHHHHHHHh
Q 002841 392 NEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKIL 459 (874)
Q Consensus 392 N~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApSNsAaD~l~~rL~ 459 (874)
-+-|.-....... + -+..=.-|+|||.+.+-.+ ++....+..+.|+|+|.--|..-.+-+.
T Consensus 77 ~dvQligg~~L~~--G---~iaEM~TGEGKTLva~lp~--~lnAL~G~~vhVvT~ndyLA~rdae~m~ 137 (822)
T 3jux_A 77 FDVQVMGGIALHE--G---KVAEMKTGEGKTLAATMPI--YLNALIGKGVHLVTVNDYLARRDALWMG 137 (822)
T ss_dssp CHHHHHHHHHHHT--T---CEEECCTTSCHHHHTHHHH--HHHHTTSSCEEEEESSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhC--C---ChhhccCCCCccHHHHHHH--HHHHhcCCceEEEeccHHHHHhHHHHHH
Confidence 3455555443332 2 2777889999998765433 3333467889999999888776555544
No 435
>1xq4_A Protein APAG; all beta protein, structural genomics, protein structure initiative, PSI, northeast structural genomics consortium, NESG; 2.70A {Bordetella pertussis} SCOP: b.1.23.1
Probab=73.57 E-value=31 Score=32.20 Aligned_cols=92 Identities=17% Similarity=0.273 Sum_probs=52.8
Q ss_pred CCeEEeccccCCCCcceeeecCC-eEEEEEEEEcCCCccEEEee-ecccCCCCceEEEEecCCCCCCCCCCCCccceeee
Q 002841 39 DPVQISFPFPFIDGKPQSVSVGE-TAVDSITIKNTTREPVELWS-KIYASTPENTFTLSVMKPPSPGSDSGTNRGFVEFF 116 (874)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~n~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (874)
.||.|+....|...+-.. ..+. -..-+|+|+|.|+++|.|.+ +..-- |.+....-++--
T Consensus 11 ~gI~V~V~~~y~~e~S~p-~~~~y~FaY~ItI~N~~~~~vQL~sRhW~It------------------D~~G~~~eV~G~ 71 (139)
T 1xq4_A 11 YDLTVSVTPRYVPEQSDP-SQQQYVFAYTVRITNTGSHPAQVISRHWIIT------------------DGEERVQEVRGL 71 (139)
T ss_dssp SCEEEEEEEEECGGGCBG-GGTBEEEEEEEEEEECSSSCEEEEEEEEEEE------------------CTTSCEEEEEEE
T ss_pred CCEEEEEEEEEchhhCCC-CCCEEEEEEEEEEEeCCCCCEEEEecEEEEE------------------eCCCCEEEEECC
Confidence 488888877776443221 1111 24669999999999999999 22110 111111111111
Q ss_pred cc--cceeeCCCCeEEEEEEEe-cCccceEeEEEEE
Q 002841 117 TL--EERMIQPGQTLTIWLSCK-PKGIGLHTTVLQF 149 (874)
Q Consensus 117 ~~--~~~~~~~g~~~~~~~~~~-~~~~g~~~~~~~f 149 (874)
.+ +--.|.||+.++++=.|. ..-.|.-.-.+.|
T Consensus 72 GVVGeqPvL~PGe~F~YtSg~~L~Tp~G~M~G~y~m 107 (139)
T 1xq4_A 72 GVVGQQPLLAPGETFEYTSGCPLPTPIGTMRGTYHC 107 (139)
T ss_dssp SSSSCCCEECTTCEEEEEEEEEESSSEEEEEEEEEE
T ss_pred CeecCCCcCCCCCceEEcCCcCcCCCceEEEEEEEE
Confidence 11 223799999999986665 3345665555554
No 436
>1xvs_A Protein APAG; MCSG APC26324, midwest center for structural genomics, structure initiative, PSI, structural genomics, unknown FUN; 2.01A {Vibrio cholerae} SCOP: b.1.23.1
Probab=73.22 E-value=18 Score=33.30 Aligned_cols=93 Identities=18% Similarity=0.163 Sum_probs=52.4
Q ss_pred CCeEEeccccCCCCcceeeecCCeEEEEEEEEcCCCccEEEee-ecccCCCCceEEEEecCCCCCCCCCCCCccceeeec
Q 002841 39 DPVQISFPFPFIDGKPQSVSVGETAVDSITIKNTTREPVELWS-KIYASTPENTFTLSVMKPPSPGSDSGTNRGFVEFFT 117 (874)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (874)
.||.|+....|...+-..-..---..-+|+|+|.|++++.|.+ +..-- |.+....-++--.
T Consensus 6 ~~I~V~V~~~y~~e~S~p~~~~y~faY~I~I~N~~~~~vQL~sRhW~It------------------d~~g~~~eV~G~G 67 (126)
T 1xvs_A 6 PCIKIQVQTRYIEEQSNPEYQRFVFAYLITIKNLSSQTVQLMSRRWLIT------------------DADGKQTVVEGDG 67 (126)
T ss_dssp CCEEEEEEEEECGGGCBGGGTBEEEEEEEEEEECSSSCEEEEEEEEEEE------------------ETTCCEEEEEEES
T ss_pred CCEEEEEEEEEchhcCCCcCCEEEEEEEEEEEECCCCCEEEEecEEEEE------------------eCCCCEEEEECCc
Confidence 4788888777664322110111124669999999999999999 22110 0000111111111
Q ss_pred c--cceeeCCCCeEEEEEEEe-cCccceEeEEEEE
Q 002841 118 L--EERMIQPGQTLTIWLSCK-PKGIGLHTTVLQF 149 (874)
Q Consensus 118 ~--~~~~~~~g~~~~~~~~~~-~~~~g~~~~~~~f 149 (874)
+ +--.|.||+.++++=.|. ..-.|.-.-.+.|
T Consensus 68 VVG~qP~L~PGe~f~YtSg~~L~tp~G~M~G~y~m 102 (126)
T 1xvs_A 68 VVGEQPRIKANDEYTYSSGTALDTPVGVMQGQYLM 102 (126)
T ss_dssp BTTBCCEECTTCEEEEEEEEEESSSEEEEEEEEEE
T ss_pred eEcCCCcCCCCCceEEeCCcCcCCCcEEEEEEEEE
Confidence 1 223799999999987665 3345666655555
No 437
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=73.02 E-value=1.9 Score=40.15 Aligned_cols=17 Identities=29% Similarity=0.513 Sum_probs=14.5
Q ss_pred EEEEcCCCCChhHHHHH
Q 002841 411 YLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve 427 (874)
++|.|++|+|||+.+..
T Consensus 4 i~v~G~~~~GKSsli~~ 20 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNR 20 (161)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999987554
No 438
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=73.02 E-value=2.8 Score=48.38 Aligned_cols=37 Identities=22% Similarity=0.358 Sum_probs=24.3
Q ss_pred CCEEEEcCCCCChhHHHHHHH-HHHHHhcCCCeEEEecC
Q 002841 409 PPYLIYGPPGTGKTMTLVEAI-LQLYATREDARLLVCAP 446 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I-~~ll~~~~~~rILv~Ap 446 (874)
..++|.||+||||||.+...+ .-++.. ....|.+...
T Consensus 40 e~~~l~G~nGsGKSTL~~~~ll~Gl~~~-~~g~i~v~g~ 77 (525)
T 1tf7_A 40 RSTLVSGTSGTGKTLFSIQFLYNGIIEF-DEPGVFVTFE 77 (525)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHH-CCCEEEEESS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHhC-CCCEEEEEEe
Confidence 468999999999999877643 344431 2345555543
No 439
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=72.93 E-value=1.4 Score=46.68 Aligned_cols=20 Identities=15% Similarity=0.130 Sum_probs=12.8
Q ss_pred CEEEEcCCCCChhHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAI 429 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I 429 (874)
.+.|.||+||||||+.....
T Consensus 7 iIgItG~sGSGKSTva~~L~ 26 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFD 26 (290)
T ss_dssp EEEEESCC---CCTHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46899999999998765443
No 440
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=72.68 E-value=1.6 Score=44.67 Aligned_cols=20 Identities=20% Similarity=0.101 Sum_probs=15.7
Q ss_pred CEEEEcCCCCChhHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAI 429 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I 429 (874)
.++|.|++|+||||.+..+.
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~ 23 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLT 23 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 46899999999998765433
No 441
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=72.59 E-value=1.9 Score=42.31 Aligned_cols=17 Identities=29% Similarity=0.528 Sum_probs=14.3
Q ss_pred EEEEcCCCCChhHHHHH
Q 002841 411 YLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve 427 (874)
++|.|++|+|||+.+-.
T Consensus 8 v~lvG~~g~GKSTLl~~ 24 (199)
T 2f9l_A 8 VVLIGDSGVGKSNLLSR 24 (199)
T ss_dssp EEEESSTTSSHHHHHHH
T ss_pred EEEECcCCCCHHHHHHH
Confidence 68999999999986543
No 442
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=72.49 E-value=5.7 Score=45.32 Aligned_cols=65 Identities=15% Similarity=0.273 Sum_probs=41.4
Q ss_pred HHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHh------cCCCe--EEEecCCHHHHHHHHHHHhcc
Q 002841 397 CSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYAT------REDAR--LLVCAPSNSAADHLLEKILGE 461 (874)
Q Consensus 397 ~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~------~~~~r--ILv~ApSNsAaD~l~~rL~~~ 461 (874)
+||...+---...-.+|+|++|||||+.+...|.+-... +.+-. ++.+---.+-+.++.+.+...
T Consensus 151 raID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~ 223 (510)
T 2ck3_A 151 KAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDA 223 (510)
T ss_dssp HHHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHT
T ss_pred eeeccccccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhc
Confidence 666666531111236999999999999977766665542 12322 334555677777888888763
No 443
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=72.45 E-value=2.1 Score=45.87 Aligned_cols=30 Identities=27% Similarity=0.496 Sum_probs=21.1
Q ss_pred CCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEE
Q 002841 409 PPYLIYGPPGTGKTMTLVEAILQLYATREDARLLV 443 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv 443 (874)
..+.|.||+|+||||.+.. +..++ ..+|++
T Consensus 127 e~vaIvGpsGsGKSTLl~l-L~gl~----~G~I~~ 156 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNS-LIHFL----GGSVLS 156 (305)
T ss_dssp SEEEEECSSSSSHHHHHHH-HHHHH----TCEEEC
T ss_pred CEEEEECCCCCcHHHHHHH-Hhhhc----CceEEE
Confidence 3588999999999986554 44454 356643
No 444
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=72.35 E-value=3.2 Score=41.49 Aligned_cols=38 Identities=29% Similarity=0.240 Sum_probs=27.2
Q ss_pred EEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEe--cCCHHHH
Q 002841 411 YLIYGPPGTGKTMTLVEAILQLYATREDARLLVC--APSNSAA 451 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~--ApSNsAa 451 (874)
.+..+-.|+||||+.+.++..+.+ .+ +||++ -+.+.+.
T Consensus 4 ~v~s~KGGvGKTT~a~~LA~~la~--~g-~VlliD~D~q~~~~ 43 (209)
T 3cwq_A 4 TVASFKGGVGKTTTAVHLSAYLAL--QG-ETLLIDGDPNRSAT 43 (209)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHT--TS-CEEEEEECTTCHHH
T ss_pred EEEcCCCCCcHHHHHHHHHHHHHh--cC-CEEEEECCCCCCHH
Confidence 356788999999999988877765 35 88874 3444433
No 445
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=72.30 E-value=4.9 Score=39.87 Aligned_cols=45 Identities=16% Similarity=0.293 Sum_probs=26.0
Q ss_pred EEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEe-cCCHHHHHHHHHH
Q 002841 411 YLIYGPPGTGKTMTLVEAILQLYATREDARLLVC-APSNSAADHLLEK 457 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~-ApSNsAaD~l~~r 457 (874)
+.|-|+-|+||||.+..+. +.+.. .+.+++++ =|......+...+
T Consensus 3 I~~EG~DGsGKsTq~~~L~-~~L~~-~g~~v~~treP~~t~~~~~ir~ 48 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLA-QYLEK-RGKKVILKREPGGTETGEKIRK 48 (197)
T ss_dssp EEEECSTTSSHHHHHHHHH-HHHHH-TTCCEEEEESSCSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH-HHHHH-CCCcEEEEECCCCCcHHHHHHH
Confidence 4688999999998765544 44443 34455544 3444433333333
No 446
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=72.26 E-value=2.1 Score=50.39 Aligned_cols=49 Identities=14% Similarity=0.053 Sum_probs=27.1
Q ss_pred CcCCCCCCHHHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHH
Q 002841 385 VPISCNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLY 433 (874)
Q Consensus 385 ~~~~~~LN~~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll 433 (874)
.|-....+.+++++...-........++|.|+|||||||++..+...+.
T Consensus 29 ~~~~~~v~~~~r~~~~~~~~~~~g~lIvLtGlsGSGKSTlAr~La~~L~ 77 (630)
T 1x6v_B 29 TYQAHHVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLV 77 (630)
T ss_dssp -----CCCHHHHHHHSSSSSSCCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cccccCCCHHHHHHHhCCCccCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3444456777777653210000112478999999999987766555443
No 447
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=72.04 E-value=2.8 Score=42.46 Aligned_cols=35 Identities=14% Similarity=0.163 Sum_probs=26.1
Q ss_pred EEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecC
Q 002841 411 YLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAP 446 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~Ap 446 (874)
.+..+-+|+||||+.+.++..+.+. .+.+||++=.
T Consensus 8 ~v~s~kGGvGKTt~a~~LA~~la~~-~g~~VlliD~ 42 (245)
T 3ea0_A 8 GFVSAKGGDGGSCIAANFAFALSQE-PDIHVLAVDI 42 (245)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTTS-TTCCEEEEEC
T ss_pred EEECCCCCcchHHHHHHHHHHHHhC-cCCCEEEEEC
Confidence 4566779999999999887776642 3678888754
No 448
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=71.97 E-value=2.2 Score=47.24 Aligned_cols=56 Identities=21% Similarity=0.246 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHHhcc-----CCC-C--CEEEEcCCCCChhHHHHHHHHHHHHh----cCCCeEEEecC
Q 002841 391 LNEEQMCSIEKILGL-----KGA-P--PYLIYGPPGTGKTMTLVEAILQLYAT----REDARLLVCAP 446 (874)
Q Consensus 391 LN~~Q~~AV~~il~~-----~~~-~--~~lI~GPPGTGKT~Tlve~I~~ll~~----~~~~rILv~Ap 446 (874)
++.+|...+...+.. .+. + ..+..|-.|+||||+.+.++..+... ..+.+||++=.
T Consensus 84 ~~~~~i~~~~~~~~~~~~~~~~~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~ 151 (398)
T 3ez2_A 84 MSIQNIIDIYEHRGVPKYRDRYSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDL 151 (398)
T ss_dssp BCHHHHHHHHHHTTCCCGGGTCCSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEE
T ss_pred CCHHHHHHHHHHhcccccCcCCCCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeC
Confidence 467777777766521 111 1 24555789999999999988777642 24678877644
No 449
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=71.94 E-value=2 Score=47.83 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=17.3
Q ss_pred CEEEEcCCCCChhHHHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQ 431 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ 431 (874)
.++|.||+|+|||+....++..
T Consensus 4 ~i~i~GptgsGKttla~~La~~ 25 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQK 25 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHHHHH
Confidence 4789999999999876655443
No 450
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=71.89 E-value=2.2 Score=49.47 Aligned_cols=66 Identities=20% Similarity=0.226 Sum_probs=34.5
Q ss_pred HHHHHHHHHhccC---CCCCEEEEcCCCCChhHHHHHHHH---HHHHhcCCCeEEEecCCHH--HHHHHHHHHh
Q 002841 394 EQMCSIEKILGLK---GAPPYLIYGPPGTGKTMTLVEAIL---QLYATREDARLLVCAPSNS--AADHLLEKIL 459 (874)
Q Consensus 394 ~Q~~AV~~il~~~---~~~~~lI~GPPGTGKT~Tlve~I~---~ll~~~~~~rILv~ApSNs--AaD~l~~rL~ 459 (874)
...+.+...|... ....+.|.|++|.|||+.+.+... ..+...-+..+-++..... .+..+...+.
T Consensus 135 ~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il 208 (549)
T 2a5y_B 135 YHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDIL 208 (549)
T ss_dssp HHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHH
Confidence 4444554444321 234578999999999987654442 1222223445666544431 3334444443
No 451
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=71.82 E-value=2 Score=42.66 Aligned_cols=18 Identities=39% Similarity=0.575 Sum_probs=15.1
Q ss_pred CEEEEcCCCCChhHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve 427 (874)
-++|.|++|+|||+.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~ 31 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTL 31 (218)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 479999999999987654
No 452
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=71.38 E-value=1.9 Score=47.61 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=26.8
Q ss_pred EEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecC
Q 002841 411 YLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAP 446 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~Ap 446 (874)
+++.|..|+||||+.+..+..+.. .+.++|++..
T Consensus 5 ~~~~gkGG~GKTt~a~~la~~la~--~g~~vllvd~ 38 (374)
T 3igf_A 5 LTFLGKSGVARTKIAIAAAKLLAS--QGKRVLLAGL 38 (374)
T ss_dssp EEEECSBHHHHHHHHHHHHHHHHH--TTCCEEEEEC
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHH--CCCCeEEEeC
Confidence 578899999999999988877775 3567666554
No 453
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=71.31 E-value=3.1 Score=57.59 Aligned_cols=58 Identities=28% Similarity=0.427 Sum_probs=33.6
Q ss_pred HHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecCC-HHHHHHHHHHHh
Q 002841 396 MCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPS-NSAADHLLEKIL 459 (874)
Q Consensus 396 ~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ApS-NsAaD~l~~rL~ 459 (874)
...+...+... .|+++.||||||||.++...+.. .++..++.+.+| ...++.+...+.
T Consensus 1294 ~~ll~~ll~~~--~pvLL~GptGtGKT~li~~~L~~----l~~~~~~~infS~~Tta~~l~~~~e 1352 (3245)
T 3vkg_A 1294 VDVLHAWLSEH--RPLILCGPPGSGKTMTLTSTLRA----FPDFEVVSLNFSSATTPELLLKTFD 1352 (3245)
T ss_dssp HHHHHHHHHTT--CCCEEESSTTSSHHHHHHHHGGG----CTTEEEEEECCCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHCC--CcEEEECCCCCCHHHHHHHHHHh----CCCCceEEEEeeCCCCHHHHHHHHh
Confidence 34455555542 46899999999999987654432 344445544443 223344544443
No 454
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=71.12 E-value=2 Score=42.01 Aligned_cols=17 Identities=29% Similarity=0.528 Sum_probs=14.4
Q ss_pred EEEEcCCCCChhHHHHH
Q 002841 411 YLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve 427 (874)
++|.|++|+|||+.+-.
T Consensus 32 v~lvG~~g~GKSTLl~~ 48 (191)
T 1oix_A 32 VVLIGDSGVGKSNLLSR 48 (191)
T ss_dssp EEEEECTTSSHHHHHHH
T ss_pred EEEECcCCCCHHHHHHH
Confidence 68999999999987543
No 455
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=71.02 E-value=2.8 Score=39.65 Aligned_cols=24 Identities=42% Similarity=0.488 Sum_probs=18.3
Q ss_pred CCEEEEcCCCCChhHHHHHHHHHHH
Q 002841 409 PPYLIYGPPGTGKTMTLVEAILQLY 433 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I~~ll 433 (874)
+..+|.||.|+|||+.+ ++|..++
T Consensus 24 g~~~I~G~NGsGKStil-~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLL-DAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHH-HHHHHHH
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHH
Confidence 45899999999999874 5555444
No 456
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=70.75 E-value=2.3 Score=39.81 Aligned_cols=17 Identities=18% Similarity=0.378 Sum_probs=14.5
Q ss_pred EEEEcCCCCChhHHHHH
Q 002841 411 YLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve 427 (874)
++|.|++|+|||+.+..
T Consensus 8 i~v~G~~~~GKssl~~~ 24 (168)
T 1z2a_A 8 MVVVGNGAVGKSSMIQR 24 (168)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECcCCCCHHHHHHH
Confidence 68999999999987654
No 457
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=70.70 E-value=2.3 Score=40.31 Aligned_cols=17 Identities=24% Similarity=0.468 Sum_probs=14.4
Q ss_pred EEEEcCCCCChhHHHHH
Q 002841 411 YLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve 427 (874)
++|.|+||+|||+.+..
T Consensus 6 v~lvG~~gvGKStL~~~ 22 (165)
T 2wji_A 6 IALIGNPNVGKSTIFNA 22 (165)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999986543
No 458
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=70.52 E-value=2.9 Score=45.77 Aligned_cols=20 Identities=25% Similarity=0.399 Sum_probs=16.6
Q ss_pred CCEEEEcCCCCChhHHHHHH
Q 002841 409 PPYLIYGPPGTGKTMTLVEA 428 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~ 428 (874)
..++|.||.|+||||++..+
T Consensus 176 ~~i~ivG~sGsGKSTll~~l 195 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKAL 195 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 46899999999999986543
No 459
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=70.45 E-value=2.2 Score=39.63 Aligned_cols=17 Identities=24% Similarity=0.559 Sum_probs=14.4
Q ss_pred EEEEcCCCCChhHHHHH
Q 002841 411 YLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve 427 (874)
++|.|++|+|||+.+..
T Consensus 6 i~v~G~~~~GKssl~~~ 22 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQ 22 (166)
T ss_dssp EEEEESTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999987543
No 460
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=70.27 E-value=2.3 Score=39.51 Aligned_cols=16 Identities=31% Similarity=0.567 Sum_probs=13.9
Q ss_pred EEEEcCCCCChhHHHH
Q 002841 411 YLIYGPPGTGKTMTLV 426 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlv 426 (874)
++|.|+||+|||+.+.
T Consensus 6 i~v~G~~~~GKSsli~ 21 (167)
T 1kao_A 6 VVVLGSGGVGKSALTV 21 (167)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6899999999998754
No 461
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=69.72 E-value=2.4 Score=41.04 Aligned_cols=18 Identities=39% Similarity=0.575 Sum_probs=15.0
Q ss_pred CEEEEcCCCCChhHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve 427 (874)
-++|.|++|+|||+.+..
T Consensus 50 ~i~vvG~~g~GKSsll~~ 67 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTL 67 (193)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378999999999987654
No 462
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=69.50 E-value=3 Score=47.05 Aligned_cols=56 Identities=13% Similarity=0.204 Sum_probs=33.2
Q ss_pred HHHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCC-CeEEEecCCHHHHHHH
Q 002841 396 MCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATRED-ARLLVCAPSNSAADHL 454 (874)
Q Consensus 396 ~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~-~rILv~ApSNsAaD~l 454 (874)
..|+..++.-.....+.|.||.|+||||.+- .|..+.. +. ..|.++-....-+..+
T Consensus 145 ~~vld~vl~i~~Gq~~~IvG~sGsGKSTLl~-~Iag~~~--~~~G~i~~~G~r~~ev~~~ 201 (438)
T 2dpy_A 145 VRAINALLTVGRGQRMGLFAGSGVGKSVLLG-MMARYTR--ADVIVVGLIGERGREVKDF 201 (438)
T ss_dssp CHHHHHHSCCBTTCEEEEEECTTSSHHHHHH-HHHHHSC--CSEEEEEEESCCHHHHHHH
T ss_pred ceEEeeeEEecCCCEEEEECCCCCCHHHHHH-HHhcccC--CCeEEEEEeceecHHHHHH
Confidence 4588887543322468899999999999854 4444432 22 3555555433333333
No 463
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=69.38 E-value=2.1 Score=41.34 Aligned_cols=24 Identities=33% Similarity=0.347 Sum_probs=18.3
Q ss_pred CCEEEEcCCCCChhHHHHHHHHHHH
Q 002841 409 PPYLIYGPPGTGKTMTLVEAILQLY 433 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I~~ll 433 (874)
+..+|.||-|+|||+++ ++|..++
T Consensus 27 g~~~i~G~NGsGKStll-~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIG-DAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHH-HHHHHHT
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHH
Confidence 35799999999999765 5555554
No 464
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=69.11 E-value=2 Score=44.41 Aligned_cols=40 Identities=15% Similarity=0.193 Sum_probs=27.5
Q ss_pred EEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEec--CCHHHHHHH
Q 002841 412 LIYGPPGTGKTMTLVEAILQLYATREDARLLVCA--PSNSAADHL 454 (874)
Q Consensus 412 lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~A--pSNsAaD~l 454 (874)
+..+-.|+||||+.+.++..+. .+.+||++= +.+.+...+
T Consensus 32 v~s~kGGvGKTT~a~~LA~~la---~g~~VlliD~D~~~~~~~~~ 73 (267)
T 3k9g_A 32 IASIKGGVGKSTSAIILATLLS---KNNKVLLIDMDTQASITSYF 73 (267)
T ss_dssp ECCSSSSSCHHHHHHHHHHHHT---TTSCEEEEEECTTCHHHHHT
T ss_pred EEeCCCCchHHHHHHHHHHHHH---CCCCEEEEECCCCCCHHHHh
Confidence 4467799999999998877665 357777763 344444444
No 465
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=69.03 E-value=24 Score=32.50 Aligned_cols=71 Identities=17% Similarity=0.191 Sum_probs=50.6
Q ss_pred eeecCCeEEEEEEEEcCCCccEEEee-ecccCCCCceEEEEecCCCCCCCCCCCCccceeeecccceeeCCCCeEEEEEE
Q 002841 56 SVSVGETAVDSITIKNTTREPVELWS-KIYASTPENTFTLSVMKPPSPGSDSGTNRGFVEFFTLEERMIQPGQTLTIWLS 134 (874)
Q Consensus 56 ~~~~~~~~~~~~~~~n~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 134 (874)
.+..|++..++++|+|.|..+..=.. +++... ..+... ...|.||++-+|.+.
T Consensus 28 ~v~~G~~~ti~vtV~N~G~~~a~~~~V~lyvng-----------------------~~v~t~---~v~La~G~s~tv~f~ 81 (127)
T 3idu_A 28 VVGVNKLAEYEVHVKNLGGIGVPSTKVRVYING-----------------------TLYKNW---TVSLGPKEEKVLTFN 81 (127)
T ss_dssp EECTTCCEEEEEEEEECSSSCEEEEEEEEEETT-----------------------EEEEEE---EEEECTTCEEEEEEE
T ss_pred cccCCCEEEEEEEEEECCCCccCCcEEEEEECC-----------------------EEEeeE---EeccCCCCeEEEEEE
Confidence 67889999999999999998875444 333211 111111 124999999999999
Q ss_pred EecCccceEeEEEEEEcc
Q 002841 135 CKPKGIGLHTTVLQFDVE 152 (874)
Q Consensus 135 ~~~~~~g~~~~~~~f~~~ 152 (874)
+.+...|.|.-..+-|=.
T Consensus 82 ~~~~~~G~~~v~AvVD~~ 99 (127)
T 3idu_A 82 WTPTQEGMYRINATVDEE 99 (127)
T ss_dssp ECCSSCEEEEEEEEESTT
T ss_pred EEcCCCcEEEEEEEEcCC
Confidence 999999998766665543
No 466
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=68.83 E-value=5.5 Score=49.63 Aligned_cols=53 Identities=19% Similarity=0.179 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhcc-CCCCCEEEEcCCCCChhHHHHHHHH--HHHHhcCCCeEEEec
Q 002841 393 EEQMCSIEKILGL-KGAPPYLIYGPPGTGKTMTLVEAIL--QLYATREDARLLVCA 445 (874)
Q Consensus 393 ~~Q~~AV~~il~~-~~~~~~lI~GPPGTGKT~Tlve~I~--~ll~~~~~~rILv~A 445 (874)
+...+.+...+.. .+...+.|.||+|.|||+.+.+... ++....+...+.++.
T Consensus 134 e~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsV 189 (1221)
T 1vt4_I 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189 (1221)
T ss_dssp HHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEEC
T ss_pred HHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEe
Confidence 4455555555543 3345688999999999998776553 233333444444443
No 467
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=68.80 E-value=2.6 Score=39.91 Aligned_cols=17 Identities=24% Similarity=0.491 Sum_probs=14.5
Q ss_pred EEEEcCCCCChhHHHHH
Q 002841 411 YLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve 427 (874)
++|.|+||+|||+.+..
T Consensus 10 i~v~G~~~~GKSsli~~ 26 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNR 26 (177)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999987544
No 468
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=68.64 E-value=2.5 Score=45.77 Aligned_cols=19 Identities=26% Similarity=0.476 Sum_probs=15.9
Q ss_pred CCEEEEcCCCCChhHHHHH
Q 002841 409 PPYLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve 427 (874)
..++|.||.|+||||++..
T Consensus 172 ~~v~i~G~~GsGKTTll~~ 190 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKS 190 (330)
T ss_dssp CCEEEEESTTSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 3589999999999997654
No 469
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=68.48 E-value=2.7 Score=39.27 Aligned_cols=17 Identities=18% Similarity=0.487 Sum_probs=14.4
Q ss_pred EEEEcCCCCChhHHHHH
Q 002841 411 YLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve 427 (874)
++|.|++|+|||+.+-.
T Consensus 6 i~v~G~~~~GKssli~~ 22 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLR 22 (170)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999987543
No 470
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=68.38 E-value=2.7 Score=39.89 Aligned_cols=17 Identities=35% Similarity=0.577 Sum_probs=14.5
Q ss_pred EEEEcCCCCChhHHHHH
Q 002841 411 YLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve 427 (874)
++|.|++|+|||+.+..
T Consensus 11 i~v~G~~~~GKSsli~~ 27 (182)
T 1ky3_A 11 VIILGDSGVGKTSLMHR 27 (182)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999987543
No 471
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=68.31 E-value=4.1 Score=46.20 Aligned_cols=24 Identities=25% Similarity=0.254 Sum_probs=18.7
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLY 433 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll 433 (874)
.+++.|.||+||||+...++..+-
T Consensus 41 ~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 41 LIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 478999999999998766555543
No 472
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=68.21 E-value=2.8 Score=39.03 Aligned_cols=17 Identities=24% Similarity=0.522 Sum_probs=14.3
Q ss_pred EEEEcCCCCChhHHHHH
Q 002841 411 YLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve 427 (874)
++|.|++|+|||+.+..
T Consensus 7 i~v~G~~~~GKssl~~~ 23 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQ 23 (168)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999987543
No 473
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=68.13 E-value=2.6 Score=39.49 Aligned_cols=17 Identities=41% Similarity=0.690 Sum_probs=14.4
Q ss_pred EEEEcCCCCChhHHHHH
Q 002841 411 YLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve 427 (874)
++|.|++|+|||+.+..
T Consensus 6 i~v~G~~~~GKssli~~ 22 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVR 22 (170)
T ss_dssp EEEEESTTSSHHHHHHH
T ss_pred EEEECcCCCCHHHHHHH
Confidence 68999999999987544
No 474
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=67.91 E-value=2.1 Score=44.29 Aligned_cols=18 Identities=22% Similarity=0.141 Sum_probs=14.8
Q ss_pred CEEEEcCCCCChhHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve 427 (874)
.++|.|++|+||||.+..
T Consensus 26 ~I~ieG~~GsGKST~~~~ 43 (263)
T 1p5z_B 26 KISIEGNIAAGKSTFVNI 43 (263)
T ss_dssp EEEEECSTTSSHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999987543
No 475
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=67.84 E-value=3.3 Score=46.27 Aligned_cols=32 Identities=16% Similarity=0.154 Sum_probs=21.9
Q ss_pred HHHHHHHHHhccCCCCCEEEEcCCCCChhHHHHH
Q 002841 394 EQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 394 ~Q~~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve 427 (874)
..+++++.+.... +.+.|.||+|+||||++-.
T Consensus 57 ~i~~~L~~~~~~~--~~valvG~nGaGKSTLln~ 88 (413)
T 1tq4_A 57 AISDALKEIDSSV--LNVAVTGETGSGKSSFINT 88 (413)
T ss_dssp HHHHHHHHHHHCC--EEEEEEECTTSSHHHHHHH
T ss_pred hhhhhhhhcccCC--eEEEEECCCCCcHHHHHHH
Confidence 3455555555432 3578999999999987643
No 476
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=67.44 E-value=7.3 Score=41.84 Aligned_cols=26 Identities=15% Similarity=-0.005 Sum_probs=21.2
Q ss_pred CCEEEEcCCCCChhHHHHHHHHHHHH
Q 002841 409 PPYLIYGPPGTGKTMTLVEAILQLYA 434 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I~~ll~ 434 (874)
+.|+++||+|+||++++...+..+..
T Consensus 19 ~~yl~~G~e~~~~~~~~~~l~~~~~~ 44 (343)
T 1jr3_D 19 AAYLLLGNDPLLLQESQDAVRQVAAA 44 (343)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCcHHHHHHHHHHHHHHHHh
Confidence 56999999999999988776665553
No 477
>1tza_A APAG protein, SOR45; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG, unknown function; 2.40A {Shewanella oneidensis} SCOP: b.1.23.1
Probab=67.29 E-value=29 Score=32.22 Aligned_cols=90 Identities=13% Similarity=0.137 Sum_probs=51.8
Q ss_pred CCeEEeccccCCCCcceeeecCC---eEEEEEEEEcCCCccEEEee-e-cccCCCCceEEEEecCCCCCCCCCCCCccce
Q 002841 39 DPVQISFPFPFIDGKPQSVSVGE---TAVDSITIKNTTREPVELWS-K-IYASTPENTFTLSVMKPPSPGSDSGTNRGFV 113 (874)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~n~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (874)
.||.|+....|...+-. ..+ -..-+|+|+|.|+++|.|.+ + ....... ...-+
T Consensus 6 ~~I~V~V~~~y~~e~S~---p~~~~y~faY~ItI~N~~~~~vQL~sRhW~Itd~~g-------------------~~~eV 63 (134)
T 1tza_A 6 NSIRVEVKTEYIEQQSS---PEDEKYLFSYTITIINLGEQAAKLETRHWIITDANG-------------------KTSEV 63 (134)
T ss_dssp GTEEEEEEEEEEEECCB---TTBCCEEEEEEEEEEECSSSCEEEEEEEEEEEETTS-------------------CEEEE
T ss_pred CCEEEEEEEEEchhhCC---CCCCEEEEEEEEEEEeCCCCCEEEEecEEEEEeCCC-------------------CEEEE
Confidence 47888877666533211 122 24669999999999999999 2 2111000 11111
Q ss_pred eeecc--cceeeCCCCeEEEEEEEe-cCccceEeEEEEEE
Q 002841 114 EFFTL--EERMIQPGQTLTIWLSCK-PKGIGLHTTVLQFD 150 (874)
Q Consensus 114 ~~~~~--~~~~~~~g~~~~~~~~~~-~~~~g~~~~~~~f~ 150 (874)
+--.+ +--.|.||+.++++=.|. ..-.|.-.-.+.|.
T Consensus 64 ~G~GVVGeqP~L~PGe~F~YtSg~~L~Tp~G~M~G~y~m~ 103 (134)
T 1tza_A 64 QGAGVVGETPTIPPNTAYQYTSGTVLDTPFGIMYGTYGMV 103 (134)
T ss_dssp EEESBTTBCCEECTTEEEEEEEEEEESSSEEEEEEEEEEE
T ss_pred EcCceEcCCCcCCCCCceEEcCCcCcCCCceEEEEEEEEE
Confidence 11111 223799999999986665 33456655555543
No 478
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=67.25 E-value=2.9 Score=39.10 Aligned_cols=17 Identities=24% Similarity=0.597 Sum_probs=14.3
Q ss_pred EEEEcCCCCChhHHHHH
Q 002841 411 YLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve 427 (874)
++|.|++|+|||+.+-.
T Consensus 6 i~v~G~~~~GKssli~~ 22 (172)
T 2erx_A 6 VAVFGAGGVGKSSLVLR 22 (172)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999986543
No 479
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=67.08 E-value=3 Score=39.95 Aligned_cols=23 Identities=30% Similarity=0.278 Sum_probs=17.4
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLY 433 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll 433 (874)
.+.|.||-|+||||.+-. +..++
T Consensus 35 ~v~L~G~nGaGKTTLlr~-l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRG-MLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHH-HHHHT
T ss_pred EEEEECCCCCCHHHHHHH-HHHhC
Confidence 578999999999987654 44443
No 480
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=66.92 E-value=4.6 Score=46.06 Aligned_cols=62 Identities=21% Similarity=0.348 Sum_probs=39.8
Q ss_pred HHHHHHhcc-CCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCe--EEEecCCHHHHHHHHHHHhcc
Q 002841 397 CSIEKILGL-KGAPPYLIYGPPGTGKTMTLVEAILQLYATREDAR--LLVCAPSNSAADHLLEKILGE 461 (874)
Q Consensus 397 ~AV~~il~~-~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~r--ILv~ApSNsAaD~l~~rL~~~ 461 (874)
+||...+-- ++ .-.+|+|++|||||+.+...|..-. ..+-. ++.+---.+-+.++.+.+...
T Consensus 164 raID~l~PigrG-QR~~I~g~~g~GKT~Lal~~I~~~~--~~dv~~V~~~IGeR~~Ev~e~~~~~~~~ 228 (515)
T 2r9v_A 164 KAIDSMIPIGRG-QRELIIGDRQTGKTAIAIDTIINQK--GQGVYCIYVAIGQKKSAIARIIDKLRQY 228 (515)
T ss_dssp HHHHHHSCEETT-CBEEEEEETTSSHHHHHHHHHHTTT--TTTEEEEEEEESCCHHHHHHHHHHHHHT
T ss_pred cccccccccccC-CEEEEEcCCCCCccHHHHHHHHHhh--cCCcEEEEEEcCCCcHHHHHHHHHHHhC
Confidence 666666531 21 2379999999999998776665432 12222 344555677777888888753
No 481
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=66.82 E-value=3 Score=38.98 Aligned_cols=17 Identities=24% Similarity=0.446 Sum_probs=14.4
Q ss_pred EEEEcCCCCChhHHHHH
Q 002841 411 YLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve 427 (874)
++|.|++|+|||+.+-.
T Consensus 9 i~v~G~~~~GKSsli~~ 25 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWR 25 (170)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEECcCCCCHHHHHHH
Confidence 68999999999986544
No 482
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=66.76 E-value=3 Score=39.27 Aligned_cols=16 Identities=38% Similarity=0.646 Sum_probs=13.9
Q ss_pred EEEEcCCCCChhHHHH
Q 002841 411 YLIYGPPGTGKTMTLV 426 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlv 426 (874)
++|.|+||+|||+.+-
T Consensus 7 i~i~G~~~vGKSsl~~ 22 (175)
T 2nzj_A 7 VVLLGDPGVGKTSLAS 22 (175)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCccHHHHHH
Confidence 6899999999998654
No 483
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=66.50 E-value=3.1 Score=38.81 Aligned_cols=17 Identities=18% Similarity=0.475 Sum_probs=14.3
Q ss_pred EEEEcCCCCChhHHHHH
Q 002841 411 YLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve 427 (874)
++|.|++|+|||+.+..
T Consensus 9 i~v~G~~~~GKssli~~ 25 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVLR 25 (170)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999987543
No 484
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=66.46 E-value=1.8 Score=42.11 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=17.6
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLYA 434 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll~ 434 (874)
.+.|.|+.|+||||++.. +..++.
T Consensus 4 ~v~IvG~SGsGKSTL~~~-L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITR-MMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHHHHH-HHHHHH
T ss_pred EEEEECCCCCCHHHHHHH-HHHHhh
Confidence 367999999999976654 445554
No 485
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=66.34 E-value=3.2 Score=38.95 Aligned_cols=16 Identities=25% Similarity=0.447 Sum_probs=13.7
Q ss_pred EEEEcCCCCChhHHHH
Q 002841 411 YLIYGPPGTGKTMTLV 426 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlv 426 (874)
++|.|+||+|||+.+-
T Consensus 5 i~ivG~~~~GKSsli~ 20 (169)
T 3q85_A 5 VMLVGESGVGKSTLAG 20 (169)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6899999999998654
No 486
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=66.30 E-value=3.6 Score=45.14 Aligned_cols=34 Identities=6% Similarity=0.038 Sum_probs=26.5
Q ss_pred EEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEecC
Q 002841 411 YLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAP 446 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~Ap 446 (874)
.+..|-+|+||||+.+.++..+.+. +.+||++-.
T Consensus 147 av~s~KGGvGKTT~a~nLA~~La~~--g~rVlliD~ 180 (373)
T 3fkq_A 147 IFTSPCGGVGTSTVAAACAIAHANM--GKKVFYLNI 180 (373)
T ss_dssp EEECSSTTSSHHHHHHHHHHHHHHH--TCCEEEEEC
T ss_pred EEECCCCCChHHHHHHHHHHHHHhC--CCCEEEEEC
Confidence 3455689999999999988877763 678888764
No 487
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=66.29 E-value=3.3 Score=45.42 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=19.7
Q ss_pred CCEEEEcCCCCChhHHHHHHHHHHHH
Q 002841 409 PPYLIYGPPGTGKTMTLVEAILQLYA 434 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I~~ll~ 434 (874)
+.++|.||-|+||||.+ ++|..++.
T Consensus 24 g~~~i~G~NGaGKTTll-~ai~~al~ 48 (365)
T 3qf7_A 24 GITVVEGPNGAGKSSLF-EAISFALF 48 (365)
T ss_dssp EEEEEECCTTSSHHHHH-HHHHHHHH
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHhc
Confidence 46899999999999765 77766654
No 488
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=66.16 E-value=3.2 Score=38.93 Aligned_cols=17 Identities=24% Similarity=0.386 Sum_probs=14.4
Q ss_pred EEEEcCCCCChhHHHHH
Q 002841 411 YLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve 427 (874)
++|.|++|+|||+.+-.
T Consensus 9 i~v~G~~~~GKssli~~ 25 (170)
T 1z08_A 9 VVLLGEGCVGKTSLVLR 25 (170)
T ss_dssp EEEECCTTSCHHHHHHH
T ss_pred EEEECcCCCCHHHHHHH
Confidence 68999999999987643
No 489
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=66.08 E-value=2.7 Score=40.60 Aligned_cols=17 Identities=41% Similarity=0.671 Sum_probs=14.3
Q ss_pred EEEEcCCCCChhHHHHH
Q 002841 411 YLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve 427 (874)
++|.|++|+|||+.+..
T Consensus 5 v~ivG~~gvGKStLl~~ 21 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQ 21 (184)
T ss_dssp EEEESCTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999986543
No 490
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=66.05 E-value=4.7 Score=45.90 Aligned_cols=63 Identities=19% Similarity=0.285 Sum_probs=39.3
Q ss_pred HHHHHHhccCCCCCEEEEcCCCCChhHHHHHHHHHHHHhcCCCe--EEEecCCHHHHHHHHHHHhcc
Q 002841 397 CSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDAR--LLVCAPSNSAADHLLEKILGE 461 (874)
Q Consensus 397 ~AV~~il~~~~~~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~r--ILv~ApSNsAaD~l~~rL~~~ 461 (874)
+||...+---...-.+|+|++|||||+.+...|..-. ..+-. ++.+---.+-+.++.+.+...
T Consensus 151 raID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~--~~dv~~V~~~iGeR~~Ev~~~~~~~~~~ 215 (502)
T 2qe7_A 151 KAIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQK--GQDVICIYVAIGQKQSTVAGVVETLRQH 215 (502)
T ss_dssp HHHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGG--SCSEEEEEEEESCCHHHHHHHHHHHHHT
T ss_pred eecccccccccCCEEEEECCCCCCchHHHHHHHHHhh--cCCcEEEEEECCCcchHHHHHHHHHhhC
Confidence 5666654311112369999999999998776665532 22322 344555677777888887753
No 491
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=66.00 E-value=3.2 Score=39.29 Aligned_cols=18 Identities=33% Similarity=0.272 Sum_probs=15.0
Q ss_pred CEEEEcCCCCChhHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve 427 (874)
-++|.|++|+|||+.+..
T Consensus 10 ~i~v~G~~~~GKssl~~~ 27 (178)
T 2lkc_A 10 VVTIMGHVDHGKTTLLDA 27 (178)
T ss_dssp EEEEESCTTTTHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378999999999987644
No 492
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=65.96 E-value=7.6 Score=38.76 Aligned_cols=45 Identities=22% Similarity=0.396 Sum_probs=26.3
Q ss_pred CEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEec-CCHHHHHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCA-PSNSAADHLLEK 457 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~A-pSNsAaD~l~~r 457 (874)
++.|-|+.|+||||.+.. +.+.+. .+.+++.+. |+.........+
T Consensus 4 FI~~EG~dGsGKsTq~~~-L~~~L~--~~~~v~~~~eP~~t~~g~~ir~ 49 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINE-VYHRLV--KDYDVIMTREPGGVPTGEEIRK 49 (205)
T ss_dssp EEEEECCTTSCHHHHHHH-HHHHHT--TTSCEEEEESSTTCHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH-HHHHHH--CCCCEEEeeCCCCChHHHHHHH
Confidence 467889999999987654 444443 345555543 444333333333
No 493
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=65.95 E-value=3.3 Score=38.62 Aligned_cols=17 Identities=29% Similarity=0.589 Sum_probs=14.2
Q ss_pred EEEEcCCCCChhHHHHH
Q 002841 411 YLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve 427 (874)
++|.|++|+|||+.+-.
T Consensus 6 i~v~G~~~~GKssli~~ 22 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQ 22 (167)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999986543
No 494
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=65.82 E-value=2.9 Score=40.42 Aligned_cols=19 Identities=16% Similarity=0.212 Sum_probs=15.5
Q ss_pred CEEEEcCCCCChhHHHHHH
Q 002841 410 PYLIYGPPGTGKTMTLVEA 428 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlve~ 428 (874)
-++|.|++|+|||+.+-..
T Consensus 25 ~i~v~G~~~~GKSsli~~l 43 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSL 43 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3799999999999876543
No 495
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=65.30 E-value=2.5 Score=41.62 Aligned_cols=17 Identities=24% Similarity=0.304 Sum_probs=14.4
Q ss_pred CEEEEcCCCCChhHHHH
Q 002841 410 PYLIYGPPGTGKTMTLV 426 (874)
Q Consensus 410 ~~lI~GPPGTGKT~Tlv 426 (874)
.+.|.|++|+||||.+-
T Consensus 28 ~v~lvG~~g~GKSTLl~ 44 (210)
T 1pui_A 28 EVAFAGRSNAGKSSALN 44 (210)
T ss_dssp EEEEEECTTSSHHHHHT
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999998653
No 496
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=65.15 E-value=4.1 Score=40.58 Aligned_cols=25 Identities=40% Similarity=0.440 Sum_probs=19.3
Q ss_pred CCEEEEcCCCCChhHHHHHHHHHHHH
Q 002841 409 PPYLIYGPPGTGKTMTLVEAILQLYA 434 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I~~ll~ 434 (874)
+..+|.||-|+|||+++ ++|..++.
T Consensus 24 ~~~~I~G~NgsGKStil-~ai~~~l~ 48 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLL-DAILVGLY 48 (203)
T ss_dssp EEEEEECCTTSSHHHHH-HHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHH-HHHHHHhc
Confidence 45899999999999765 55665554
No 497
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=65.09 E-value=4.2 Score=42.65 Aligned_cols=31 Identities=23% Similarity=0.242 Sum_probs=24.1
Q ss_pred EEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEe
Q 002841 412 LIYGPPGTGKTMTLVEAILQLYATREDARLLVC 444 (874)
Q Consensus 412 lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ 444 (874)
+..+-.|+||||+.+.++..+.+ .+.+||++
T Consensus 9 v~s~KGGvGKTT~a~nLA~~La~--~G~~Vlli 39 (286)
T 2xj4_A 9 VGNEKGGAGKSTIAVHLVTALLY--GGAKVAVI 39 (286)
T ss_dssp ECCSSSCTTHHHHHHHHHHHHHH--TTCCEEEE
T ss_pred EEcCCCCCCHHHHHHHHHHHHHH--CCCcEEEE
Confidence 44567999999999998887765 46788774
No 498
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=65.08 E-value=3.2 Score=39.20 Aligned_cols=17 Identities=24% Similarity=0.431 Sum_probs=14.4
Q ss_pred EEEEcCCCCChhHHHHH
Q 002841 411 YLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve 427 (874)
++|.|++|+|||+.+-.
T Consensus 17 i~v~G~~~~GKssli~~ 33 (179)
T 2y8e_A 17 LVFLGEQSVGKTSLITR 33 (179)
T ss_dssp EEEEESTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999987543
No 499
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=65.02 E-value=3.4 Score=39.63 Aligned_cols=17 Identities=24% Similarity=0.468 Sum_probs=14.5
Q ss_pred EEEEcCCCCChhHHHHH
Q 002841 411 YLIYGPPGTGKTMTLVE 427 (874)
Q Consensus 411 ~lI~GPPGTGKT~Tlve 427 (874)
++|.|++|+|||+.+..
T Consensus 10 i~lvG~~gvGKStL~~~ 26 (188)
T 2wjg_A 10 IALIGNPNVGKSTIFNA 26 (188)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999987643
No 500
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=64.99 E-value=2.8 Score=42.34 Aligned_cols=34 Identities=24% Similarity=0.261 Sum_probs=21.3
Q ss_pred CCEEEEcCCCCChhHHHHHHHHHHHHhcCCCeEEEe
Q 002841 409 PPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVC 444 (874)
Q Consensus 409 ~~~lI~GPPGTGKT~Tlve~I~~ll~~~~~~rILv~ 444 (874)
..+.|.||.|+||||.+- ++.-++. .....|.+.
T Consensus 36 e~~~iiG~NGsGKSTLlk-~l~Gl~~-p~~G~I~~~ 69 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLK-TISTYLK-PLKGEIIYN 69 (214)
T ss_dssp CCEEEECCTTSSHHHHHH-HHTTSSC-CSEEEEEET
T ss_pred CEEEEECCCCCCHHHHHH-HHhcCCC-CCCeEEEEC
Confidence 368999999999998654 3433332 112456653
Done!