BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002842
(874 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EG9|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF
MEMBRIN
pdb|3EGD|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND
BOUND To The Transport Signal Sequence Of Vesicular
Stomatitis Virus Glycoprotein
pdb|3EGX|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22B AND
Bound To The Transport Signal Sequence Of The Snare
Protein Bet1
Length = 764
Score = 161 bits (407), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 177/739 (23%), Positives = 296/739 (40%), Gaps = 90/739 (12%)
Query: 149 ESSCVLFSAHKVLKKKKQANVPSLGFGALVSPGKEVSPSLQIIQRDPHRCH--NCGAFAN 206
E V FS + + +A + AL +P KE P L IQ +P C C A N
Sbjct: 13 ERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKE-RPDLPPIQYEPVLCSRTTCRAVLN 71
Query: 207 IYCKILLGSGQWQCVICRNLNGSEGEYVAPSKEELRNFPELSSPMVDYVQTGNNRSSYVP 266
C++ + W C C N Y S+ N P P ++ YV
Sbjct: 72 PLCQVDYRAKLWACNFCYQRNQFPPSYAGISE---LNQPAELLPQFSSIE-------YVV 121
Query: 267 VSDSRMSAPIILVIDECLDEPHLQHLQSSLHAFVESIPPTARIGIILYGRTVSVYDFSED 326
+ +M + V+D C+++ LQ L+ S+ + +PPTA +G+I +GR V V++ +
Sbjct: 122 LRGPQMPLIFLYVVDTCMEDEDLQALKESMQMSLSLLPPTALVGLITFGRMVQVHELGCE 181
Query: 327 SIASSDVLAGDKLPTEDSLKALLYGTGVYLSPMHASKQV-----AHDIFSSLRPYKLNIT 381
I+ S V G K + L+ +L + V L+ QV ++ ++ +N+T
Sbjct: 182 GISKSYVFRGTKDLSAKQLQEMLGLSKVPLTQATRGPQVQQPPPSNRFLQPVQKIDMNLT 241
Query: 382 ----EASRD-----------RCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRIIVCAG 426
E RD R G A+ +A+ +++ P +RI++ G
Sbjct: 242 DLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLE----------CTFPNTGARIMMFIG 291
Query: 427 GPNTYGPGSV-----------PHSFSHPNYLHMEKMALKWMELLGRKAHQHNAVIDILCA 475
GP T GPG V H N +++K K E L +A VIDI
Sbjct: 292 GPATQGPGMVVGDELKTPIRSWHDIDKDNAKYVKK-GTKHFEALANRAATTGHVIDIYAC 350
Query: 476 GNCPVRVPVLQPLAKASGGVLVLHDDFGEA-FGVNLQRASTR------AAGSHGFLEIRC 528
+ ++ +GG +V+ D F + F QR T+ G G LEI+
Sbjct: 351 ALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDMHGQFKMGFGGTLEIKT 410
Query: 529 SDDILVTQIVGP----GEEAHIDTHETFKNDAALSIQMPSVEETQSFAVSME--NKRDI- 581
S +I ++ +GP + + ++ + T + A+ E N+ +
Sbjct: 411 SREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFEVVNQHNAP 470
Query: 582 --ESNHVFFQFAIRYSNVYQADISRVVTVRLPTVDS---VSAYLSSFQDEVAAVLIAKRT 636
+ QF +Y + RV T+ D+ + +SF E AA+L+A+
Sbjct: 471 IPQGGRGAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAILMARLA 530
Query: 637 LLRAKIFSEAIDMRTMIDERVKDIALKFG---SQVPKSKLYRFPKELSALSELLFHLRRS 693
+ RA+ E D+ +D ++ + KFG P S +RF + S + +FHLRRS
Sbjct: 531 IYRAET-EEGPDVLRWLDRQLIRLCQKFGEYHKDDPSS--FRFSETFSLYPQFMFHLRRS 587
Query: 694 PLLGNIIGHDDERSVLRNLFLNASFDLSLRMVAPRCLMYREGGTFEELPAYDLAMQSDKA 753
L DE S R+ F+ SL M+ P Y G E + ++ +D+
Sbjct: 588 SFLQVFNNSPDESSYYRHHFMRQDLTQSLIMIQPILYAYSFSGPPEPVLLDSSSILADRI 647
Query: 754 VVLDHGTDVFIWLGAELA-------ADEGRSXXXXXXXXXXXXXXSEF---RFPAPRILA 803
+++D + I+ G +A D E RFP PR +
Sbjct: 648 LLMDTFFQILIYHGETIAQWRKSGYQDMPEYENFRHLLQAPVDDAQEILHSRFPMPRYID 707
Query: 804 FKEGSSQARYFVTRLIPAH 822
+ G SQAR+ ++++ P+
Sbjct: 708 TEHGGSQARFLLSKVNPSQ 726
>pdb|2NUP|A Chain A, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
pdb|2NUT|A Chain A, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
Length = 769
Score = 159 bits (403), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 176/739 (23%), Positives = 296/739 (40%), Gaps = 90/739 (12%)
Query: 149 ESSCVLFSAHKVLKKKKQANVPSLGFGALVSPGKEVSPSLQIIQRDPHRCH--NCGAFAN 206
E V FS + + +A + AL +P KE P L IQ +P C C A N
Sbjct: 17 ERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKE-RPDLPPIQYEPVLCSRTTCRAVLN 75
Query: 207 IYCKILLGSGQWQCVICRNLNGSEGEYVAPSKEELRNFPELSSPMVDYVQTGNNRSSYVP 266
C++ + W C C N Y S+ N P P ++ YV
Sbjct: 76 PLCQVDYRAKLWACNFCYQRNQFPPSYAGISE---LNQPAELLPQFSSIE-------YVV 125
Query: 267 VSDSRMSAPIILVIDECLDEPHLQHLQSSLHAFVESIPPTARIGIILYGRTVSVYDFSED 326
+ +M + V+D C+++ LQ L+ S+ + +PPTA +G+I +GR V V++ +
Sbjct: 126 LRGPQMPLIFLYVVDTCMEDEDLQALKESMQMSLSLLPPTALVGLITFGRMVQVHELGCE 185
Query: 327 SIASSDVLAGDKLPTEDSLKALLYGTGVYLSPMHASKQV-----AHDIFSSLRPYKLNIT 381
I+ S V G K + L+ +L + V ++ QV ++ ++ +N+T
Sbjct: 186 GISKSYVFRGTKDLSAKQLQEMLGLSKVPVTQATRGPQVQQPPPSNRFLQPVQKIDMNLT 245
Query: 382 ----EASRD-----------RCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRIIVCAG 426
E RD R G A+ +A+ +++ P +RI++ G
Sbjct: 246 DLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLE----------CTFPNTGARIMMFIG 295
Query: 427 GPNTYGPGSV-----------PHSFSHPNYLHMEKMALKWMELLGRKAHQHNAVIDILCA 475
GP T GPG V H N +++K K E L +A VIDI
Sbjct: 296 GPATQGPGMVVGDELKTPIRSWHDIDKDNAKYVKK-GTKHFEALANRAATTGHVIDIYAC 354
Query: 476 GNCPVRVPVLQPLAKASGGVLVLHDDFGEA-FGVNLQRASTR------AAGSHGFLEIRC 528
+ ++ +GG +V+ D F + F QR T+ G G LEI+
Sbjct: 355 ALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDMHGQFKMGFGGTLEIKT 414
Query: 529 SDDILVTQIVGP----GEEAHIDTHETFKNDAALSIQMPSVEETQSFAVSME--NKRDI- 581
S +I ++ +GP + + ++ + T + A+ E N+ +
Sbjct: 415 SREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFEVVNQHNAP 474
Query: 582 --ESNHVFFQFAIRYSNVYQADISRVVTVRLPTVDS---VSAYLSSFQDEVAAVLIAKRT 636
+ QF +Y + RV T+ D+ + +SF E AA+L+A+
Sbjct: 475 IPQGGRGAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAILMARLA 534
Query: 637 LLRAKIFSEAIDMRTMIDERVKDIALKFG---SQVPKSKLYRFPKELSALSELLFHLRRS 693
+ RA+ E D+ +D ++ + KFG P S +RF + S + +FHLRRS
Sbjct: 535 IYRAET-EEGPDVLRWLDRQLIRLCQKFGEYHKDDPSS--FRFSETFSLYPQFMFHLRRS 591
Query: 694 PLLGNIIGHDDERSVLRNLFLNASFDLSLRMVAPRCLMYREGGTFEELPAYDLAMQSDKA 753
L DE S R+ F+ SL M+ P Y G E + ++ +D+
Sbjct: 592 SFLQVFNNSPDESSYYRHHFMRQDLTQSLIMIQPILYAYSFSGPPEPVLLDSSSILADRI 651
Query: 754 VVLDHGTDVFIWLGAELA-------ADEGRSXXXXXXXXXXXXXXSEF---RFPAPRILA 803
+++D + I+ G +A D E RFP PR +
Sbjct: 652 LLMDTFFQILIYHGETIAQWRKSGYQDMPEYENFRHLLQAPVDDAQEILHSRFPMPRYID 711
Query: 804 FKEGSSQARYFVTRLIPAH 822
+ G SQAR+ ++++ P+
Sbjct: 712 TEHGGSQARFLLSKVNPSQ 730
>pdb|3EFO|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF
SYNTAXIN 5
Length = 765
Score = 159 bits (401), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 176/739 (23%), Positives = 295/739 (39%), Gaps = 90/739 (12%)
Query: 149 ESSCVLFSAHKVLKKKKQANVPSLGFGALVSPGKEVSPSLQIIQRDPHRCH--NCGAFAN 206
E V FS + + +A + AL +P KE P L IQ +P C C A N
Sbjct: 13 ERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKE-RPDLPPIQYEPVLCSRTTCRAVLN 71
Query: 207 IYCKILLGSGQWQCVICRNLNGSEGEYVAPSKEELRNFPELSSPMVDYVQTGNNRSSYVP 266
C++ + W C C N Y S+ N P P ++ YV
Sbjct: 72 PLCQVDYRAKLWACNFCYQRNQFPPSYAGISE---LNQPAELLPQFSSIE-------YVV 121
Query: 267 VSDSRMSAPIILVIDECLDEPHLQHLQSSLHAFVESIPPTARIGIILYGRTVSVYDFSED 326
+ +M + V+D C+++ LQ L+ S+ + +PPTA +G+I +GR V V++ +
Sbjct: 122 LRGPQMPLIFLYVVDTCMEDEDLQALKESMQMSLSLLPPTALVGLITFGRMVQVHELGCE 181
Query: 327 SIASSDVLAGDKLPTEDSLKALLYGTGVYLSPMHASKQV-----AHDIFSSLRPYKLNIT 381
I+ S V G + L+ +L + V L+ QV ++ ++ +N+T
Sbjct: 182 GISKSYVFRGTGDLSAKQLQEMLGLSKVPLTQATRGPQVQQPPPSNRFLQPVQKIDMNLT 241
Query: 382 ----EASRD-----------RCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRIIVCAG 426
E RD R G A+ +A+ +++ P +RI++ G
Sbjct: 242 DLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLE----------CTFPNTGARIMMFIG 291
Query: 427 GPNTYGPGSV-----------PHSFSHPNYLHMEKMALKWMELLGRKAHQHNAVIDILCA 475
GP T GPG V H N +++K K E L +A VIDI
Sbjct: 292 GPATQGPGMVVGDELKTPIRSWHDIDKDNAKYVKK-GTKHFEALANRAATTGHVIDIYAC 350
Query: 476 GNCPVRVPVLQPLAKASGGVLVLHDDFGEA-FGVNLQRASTR------AAGSHGFLEIRC 528
+ ++ +GG +V+ D F + F QR T+ G G LEI+
Sbjct: 351 ALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDMHGQFKMGFGGTLEIKT 410
Query: 529 SDDILVTQIVGP----GEEAHIDTHETFKNDAALSIQMPSVEETQSFAVSME--NKRDI- 581
S +I ++ +GP + + ++ + T + A+ E N+ +
Sbjct: 411 SREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFEVVNQHNAP 470
Query: 582 --ESNHVFFQFAIRYSNVYQADISRVVTVRLPTVDS---VSAYLSSFQDEVAAVLIAKRT 636
+ QF +Y + RV T+ D+ + +SF E AA+L+A+
Sbjct: 471 IPQGGRGAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAILMARLA 530
Query: 637 LLRAKIFSEAIDMRTMIDERVKDIALKFG---SQVPKSKLYRFPKELSALSELLFHLRRS 693
+ RA+ E D+ +D ++ + KFG P S +RF + S + +FHLRRS
Sbjct: 531 IYRAET-EEGPDVLRWLDRQLIRLCQKFGEYHKDDPSS--FRFSETFSLYPQFMFHLRRS 587
Query: 694 PLLGNIIGHDDERSVLRNLFLNASFDLSLRMVAPRCLMYREGGTFEELPAYDLAMQSDKA 753
L DE S R+ F+ SL M+ P Y G E + ++ +D+
Sbjct: 588 SFLQVFNNSPDESSYYRHHFMRQDLTQSLIMIQPILYAYSFSGPPEPVLLDSSSILADRI 647
Query: 754 VVLDHGTDVFIWLGAELA-------ADEGRSXXXXXXXXXXXXXXSEF---RFPAPRILA 803
+++D + I+ G +A D E RFP PR +
Sbjct: 648 LLMDTFFQILIYHGETIAQWRKSGYQDMPEYENFRHLLQAPVDDAQEILHSRFPMPRYID 707
Query: 804 FKEGSSQARYFVTRLIPAH 822
+ G SQAR+ ++++ P+
Sbjct: 708 TEHGGSQARFLLSKVNPSQ 726
>pdb|1M2O|A Chain A, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|C Chain C, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2V|A Chain A, Crystal Structure Of The Yeast Sec2324 HETERODIMER
Length = 768
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 174/767 (22%), Positives = 312/767 (40%), Gaps = 126/767 (16%)
Query: 153 VLFSAHKVLKKKKQANVPSLGFGALVSPGKE-----VSPSLQIIQRDPHRCHNCGAFANI 207
V F+ + + AN + G L +P KE V+P ++ PH C + N
Sbjct: 12 VRFTWNVFPSTRSDANSNVVPVGCLYTPLKEYDELNVAPYNPVVCSGPH----CKSILNP 67
Query: 208 YCKILLGSGQWQCVICRNLNGSEGEYVAPSKEELRNFP-ELSSPMVDYVQTGNNRSSYVP 266
YC I + W C IC + N +Y S+E N P EL S ++Y+ N+ VP
Sbjct: 68 YCVIDPRNSSWSCPICNSRNHLPPQYTNLSQE---NMPLELQSTTIEYI---TNKPVTVP 121
Query: 267 VSDSRMSAPIIL-VIDECLDEPHLQHLQSSLHAFVESIPPTARIGIILYGRTVSVYDFSE 325
PI V+D + +L L+ S+ + +PP A IG+I YG V ++D S
Sbjct: 122 --------PIFFFVVDLTSETENLDSLKESIITSLSLLPPNALIGLITYGNVVQLHDLSS 173
Query: 326 DSIASSDVLAGDKLPTEDSLKALLYG---TG---------------------VYLSPMHA 361
++I +V GD+ ++L +L G TG + P+
Sbjct: 174 ETIDRCNVFRGDREYQLEALTEMLTGQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQ 233
Query: 362 SKQVAHDIFSSLRPYKLNITEASRD-RCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSR 420
+ + + +L P + ++ R R G+A+ +A ++QG + +R
Sbjct: 234 VEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGCYKNIP----------AR 283
Query: 421 IIVCAGGPNTYGPGSVPHS------FSH----PNYLHMEKMALKWMELLGRKAHQHNAVI 470
II+ A GP T PG + +S SH ++ K A K+ + ++ + +
Sbjct: 284 IILFASGPGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTV 343
Query: 471 DILCAGNCPVRVPVLQPLAKASGGVLVLHDDFGEAFGVNLQRASTR--AAGSHGFLE--- 525
DI + + ++ L ++GGVL+L D F A +++ R A G+L+
Sbjct: 344 DIFAGCYDQIGMSEMKQLTDSTGGVLLLTDAFSTAI---FKQSYLRLFAKDEEGYLKMAF 400
Query: 526 -----IRCSDDILVTQIVGPGE-----EAHIDTHETFKNDAALSIQMPSVEETQSFAVSM 575
++ S D+ V ++G +A+ + A + +M S+ S+A+
Sbjct: 401 NGNMAVKTSKDLKVQGLIGHASAVKKTDANNISESEIGIGATSTWKMASLSPYHSYAIFF 460
Query: 576 ENKRDIESNH--------------VFFQFAIRYSNVYQADISRVVTVR---LPTVDSVSA 618
E +++ + QF Y + + RV TV LP A
Sbjct: 461 EIANTAANSNPMMSAPGSADRPHLAYTQFITTYQHSSGTNRIRVTTVANQLLPF--GTPA 518
Query: 619 YLSSFQDEVAAVLIAKRTLLRAKIFSEAIDMRTMIDERVKDIALKFGS---QVPKSKLYR 675
+SF E AAVL+A+ + +A+ + D+ +D + + K+ P+S +R
Sbjct: 519 IAASFDQEAAAVLMARIAVHKAET-DDGADVIRWLDRTLIKLCQKYADYNKDDPQS--FR 575
Query: 676 FPKELSALSELLFHLRRSPLLGNIIGHDDERSVLRNLFLNASFDLSLRMVAPRCLMYREG 735
S + ++LRRS L DE + R++F SL M+ P +
Sbjct: 576 LAPNFSLYPQFTYYLRRSQFLSVFNNSPDETAFYRHIFTREDTTNSLIMIQPTLTSFSME 635
Query: 736 GTFEELPAYDLAMQSDKAVVLDHGTDVFIWLGAELA-------ADEGRSXXXXXXXXXXX 788
+ + ++++ + ++LD + I+ G ++A D+ +
Sbjct: 636 DDPQPVLLDSISVKPNTILLLDTFFFILIYHGEQIAQWRKAGYQDDPQYADFKALLEEPK 695
Query: 789 XXXSEF---RFPAPRILAFKEGSSQARYFVTRLIPAHKDPPYEQEAR 832
+E RFP PR + + G SQAR+ +++L P+ Y+ AR
Sbjct: 696 LEAAELLVDRFPLPRFIDTEAGGSQARFLLSKLNPSDN---YQDMAR 739
>pdb|2QTV|A Chain A, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 772
Score = 137 bits (344), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 174/767 (22%), Positives = 312/767 (40%), Gaps = 126/767 (16%)
Query: 153 VLFSAHKVLKKKKQANVPSLGFGALVSPGKE-----VSPSLQIIQRDPHRCHNCGAFANI 207
V F+ + + AN + G L +P KE V+P ++ PH C + N
Sbjct: 16 VRFTWNVFPSTRSDANSNVVPVGCLYTPLKEYDELNVAPYNPVVCSGPH----CKSILNP 71
Query: 208 YCKILLGSGQWQCVICRNLNGSEGEYVAPSKEELRNFP-ELSSPMVDYVQTGNNRSSYVP 266
YC I + W C IC + N +Y S+E N P EL S ++Y+ N+ VP
Sbjct: 72 YCVIDPRNSSWSCPICNSRNHLPPQYTNLSQE---NMPLELQSTTIEYI---TNKPVTVP 125
Query: 267 VSDSRMSAPIIL-VIDECLDEPHLQHLQSSLHAFVESIPPTARIGIILYGRTVSVYDFSE 325
PI V+D + +L L+ S+ + +PP A IG+I YG V ++D S
Sbjct: 126 --------PIFFFVVDLTSETENLDSLKESIITSLSLLPPNALIGLITYGNVVQLHDLSS 177
Query: 326 DSIASSDVLAGDKLPTEDSLKALLYG---TG---------------------VYLSPMHA 361
++I +V GD+ ++L +L G TG + P+
Sbjct: 178 ETIDRCNVFRGDREYQLEALTEMLTGQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQ 237
Query: 362 SKQVAHDIFSSLRPYKLNITEASRD-RCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSR 420
+ + + +L P + ++ R R G+A+ +A ++QG + +R
Sbjct: 238 VEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGCYKNIP----------AR 287
Query: 421 IIVCAGGPNTYGPGSVPHS------FSH----PNYLHMEKMALKWMELLGRKAHQHNAVI 470
II+ A GP T PG + +S SH ++ K A K+ + ++ + +
Sbjct: 288 IILFASGPGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTV 347
Query: 471 DILCAGNCPVRVPVLQPLAKASGGVLVLHDDFGEAFGVNLQRASTR--AAGSHGFLE--- 525
DI + + ++ L ++GGVL+L D F A +++ R A G+L+
Sbjct: 348 DIFAGCYDQIGMSEMKQLTDSTGGVLLLTDAFSTAI---FKQSYLRLFAKDEEGYLKMAF 404
Query: 526 -----IRCSDDILVTQIVGPGE-----EAHIDTHETFKNDAALSIQMPSVEETQSFAVSM 575
++ S D+ V ++G +A+ + A + +M S+ S+A+
Sbjct: 405 NGNMAVKTSKDLKVQGLIGHASAVKKTDANNISESEIGIGATSTWKMASLSPYHSYAIFF 464
Query: 576 ENKRDIESNH--------------VFFQFAIRYSNVYQADISRVVTVR---LPTVDSVSA 618
E +++ + QF Y + + RV TV LP A
Sbjct: 465 EIANTAANSNPMMSAPGSADRPHLAYTQFITTYQHSSGTNRIRVTTVANQLLPF--GTPA 522
Query: 619 YLSSFQDEVAAVLIAKRTLLRAKIFSEAIDMRTMIDERVKDIALKFGS---QVPKSKLYR 675
+SF E AAVL+A+ + +A+ + D+ +D + + K+ P+S +R
Sbjct: 523 IAASFDQEAAAVLMARIAVHKAET-DDGADVIRWLDRTLIKLCQKYADYNKDDPQS--FR 579
Query: 676 FPKELSALSELLFHLRRSPLLGNIIGHDDERSVLRNLFLNASFDLSLRMVAPRCLMYREG 735
S + ++LRRS L DE + R++F SL M+ P +
Sbjct: 580 LAPNFSLYPQFTYYLRRSQFLSVFNNSPDETAFYRHIFTREDTTNSLIMIQPTLTSFSME 639
Query: 736 GTFEELPAYDLAMQSDKAVVLDHGTDVFIWLGAELA-------ADEGRSXXXXXXXXXXX 788
+ + ++++ + ++LD + I+ G ++A D+ +
Sbjct: 640 DDPQPVLLDSISVKPNTILLLDTFFFILIYHGEQIAQWRKAGYQDDPQYADFKALLEEPK 699
Query: 789 XXXSEF---RFPAPRILAFKEGSSQARYFVTRLIPAHKDPPYEQEAR 832
+E RFP PR + + G SQAR+ +++L P+ Y+ AR
Sbjct: 700 LEAAELLVDRFPLPRFIDTEAGGSQARFLLSKLNPSDN---YQDMAR 743
>pdb|2NUP|B Chain B, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
pdb|2NUT|B Chain B, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
Length = 753
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 99/488 (20%), Positives = 180/488 (36%), Gaps = 65/488 (13%)
Query: 152 CVLFSAHKVLKKKKQANVPSLGFGALVSPGKEVSPSLQIIQRDPHRCHNCGAFANIYCKI 211
C L S + +A +P G L+ P K++ + RC +C + N +
Sbjct: 48 CTLTSIPQTQALLNKAKLP---LGLLLHPFKDLVQLPVVTSSTIVRCRSCRTYINPFVS- 103
Query: 212 LLGSGQWQCVICRNLNGSEGEYVAPSKEELRNFPELSSPMVDYVQTGNNRSSYVPVSDSR 271
L +W+C +C +N E++ + P P V N ++ S+
Sbjct: 104 FLDQRRWKCNLCYRVNDVPEEFLYNPLTRVYGEPH-RRPEVQ-----NATIEFMAPSEYM 157
Query: 272 MSAP----IILVID---ECLDEPHLQHLQSSLHAFVESIPPTAR--IGIILYGRTVSVYD 322
+ P + V D ++ +L + SL ++ +P R IG I + T+ Y
Sbjct: 158 LRPPQPPVYLFVFDVSHNAVETGYLNSVCQSLLDNLDLLPGNTRTKIGFITFDSTIHFYG 217
Query: 323 FSEDSIASSDVLAGDK----LPTEDSLKALLYGTGVYLSPMHASKQVAHDIFSSLRPYKL 378
E ++ D +P ++L L ++ SK++ D+ +L P
Sbjct: 218 LQESLSQPQMLIVSDIEDVFIPMPENL----------LVNLNESKELVQDLLKTL-PQMF 266
Query: 379 NITEASRDRCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRIIVCAGGPNTYGPGSVPH 438
T ++ LG A++ A ++ MS + P G P P+
Sbjct: 267 TKTLETQS-ALGPALQAAFKLMSPTGGRMSVFQTQLP---------TLGVGALKPREEPN 316
Query: 439 SFSHPNYLHMEKMALKWMELLGRKAHQHNAVIDILCAGNCPVRVPVLQPLAKASGGVLVL 498
S +HM + +L + Q AV L +G + L +++ S G +
Sbjct: 317 HRSSAKDIHMTPSTDFYKKLALDCSGQQVAVDLFLLSGQYS-DLASLGCISRYSAGSVYY 375
Query: 499 HDDFG--------EAFGVNLQRASTRAAGSHGFLEIRCSDDILVTQIVGPGEEAHIDTHE 550
+ + + LQR TR G + IRC+ G H H
Sbjct: 376 YPSYHHQHNPVQVQKLQKELQRYLTRKIGFEAVMRIRCTK----------GLSIHT-FHG 424
Query: 551 TFKNDAALSIQMPSVEETQSFAVSMENKRDI-ESNHVFFQFAIRYSNVYQADISRVVTVR 609
F + + +P+V +AV M + + ++ V FQ A+ Y++ RV T+
Sbjct: 425 NFFVRSTDLLSLPNVNPDAGYAVQMSVEESLTDTQLVSFQSALLYTSSKGERRIRVHTLC 484
Query: 610 LPTVDSVS 617
LP V +++
Sbjct: 485 LPVVSTLN 492
>pdb|3EGD|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND
BOUND To The Transport Signal Sequence Of Vesicular
Stomatitis Virus Glycoprotein
pdb|3EGX|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22B AND
Bound To The Transport Signal Sequence Of The Snare
Protein Bet1
Length = 748
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 99/488 (20%), Positives = 180/488 (36%), Gaps = 65/488 (13%)
Query: 152 CVLFSAHKVLKKKKQANVPSLGFGALVSPGKEVSPSLQIIQRDPHRCHNCGAFANIYCKI 211
C L S + +A +P G L+ P K++ + RC +C + N +
Sbjct: 43 CTLTSIPQTQALLNKAKLP---LGLLLHPFKDLVQLPVVTSSTIVRCRSCRTYINPFVS- 98
Query: 212 LLGSGQWQCVICRNLNGSEGEYVAPSKEELRNFPELSSPMVDYVQTGNNRSSYVPVSDSR 271
L +W+C +C +N E++ + P P V N ++ S+
Sbjct: 99 FLDQRRWKCNLCYRVNDVPEEFLYNPLTRVYGEPH-RRPEVQ-----NATIEFMAPSEYM 152
Query: 272 MSAP----IILVID---ECLDEPHLQHLQSSLHAFVESIPPTAR--IGIILYGRTVSVYD 322
+ P + V D ++ +L + SL ++ +P R IG I + T+ Y
Sbjct: 153 LRPPQPPVYLFVFDVSHNAVETGYLNSVCQSLLDNLDLLPGNTRTKIGFITFDSTIHFYG 212
Query: 323 FSEDSIASSDVLAGDK----LPTEDSLKALLYGTGVYLSPMHASKQVAHDIFSSLRPYKL 378
E ++ D +P ++L L ++ SK++ D+ +L P
Sbjct: 213 LQESLSQPQMLIVSDIEDVFIPMPENL----------LVNLNESKELVQDLLKTL-PQMF 261
Query: 379 NITEASRDRCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRIIVCAGGPNTYGPGSVPH 438
T ++ LG A++ A ++ MS + P G P P+
Sbjct: 262 TKTLETQS-ALGPALQAAFKLMSPTGGRMSVFQTQLP---------TLGVGALKPREEPN 311
Query: 439 SFSHPNYLHMEKMALKWMELLGRKAHQHNAVIDILCAGNCPVRVPVLQPLAKASGGVLVL 498
S +HM + +L + Q AV L +G + L +++ S G +
Sbjct: 312 HRSSAKDIHMTPSTDFYKKLALDCSGQQVAVDLFLLSGQYS-DLASLGCISRYSAGSVYY 370
Query: 499 HDDFG--------EAFGVNLQRASTRAAGSHGFLEIRCSDDILVTQIVGPGEEAHIDTHE 550
+ + + LQR TR G + IRC+ G H H
Sbjct: 371 YPSYHHQHNPVQVQKLQKELQRYLTRKIGFEAVMRIRCTK----------GLSIHT-FHG 419
Query: 551 TFKNDAALSIQMPSVEETQSFAVSMENKRDI-ESNHVFFQFAIRYSNVYQADISRVVTVR 609
F + + +P+V +AV M + + ++ V FQ A+ Y++ RV T+
Sbjct: 420 NFFVRSTDLLSLPNVNPDAGYAVQMSVEESLTDTQLVSFQSALLYTSSKGERRIRVHTLC 479
Query: 610 LPTVDSVS 617
LP V +++
Sbjct: 480 LPVVSTLN 487
>pdb|3EH2|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24c
pdb|3EH2|B Chain B, Crystal Structure Of The Human Copii-Coat Protein Sec24c
pdb|3EH2|C Chain C, Crystal Structure Of The Human Copii-Coat Protein Sec24c
Length = 766
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/181 (19%), Positives = 75/181 (41%), Gaps = 32/181 (17%)
Query: 165 KQANVPSLGFGALVSPGKEVSP---SLQII---QRDPHRCHNCGAFANIYCKILLGSGQW 218
KQA VP A++ P + P S ++ + P RC+ C A+ + + + G ++
Sbjct: 61 KQAQVP---LAAVIKPLARLPPEEASPYVVDHGESGPLRCNRCKAYMCPFMQFIEGGRRF 117
Query: 219 QCVICRNLNGSEGEYV-----APSKEELRNFPELSSPMVDYVQTGNNRSSYVPVSDSRMS 273
QC C +N +Y + + + PELS +++ T + +++
Sbjct: 118 QCCFCSCINDVPPQYFQHLDHTGKRVDAYDRPELSLGSYEFLATVDY------CKNNKFP 171
Query: 274 AP--IILVID---ECLDEPHLQHLQSSLHAFVESIP-------PTARIGIILYGRTVSVY 321
+P I +ID + ++ L L + ++ +P R+G + Y + + Y
Sbjct: 172 SPPAFIFMIDVSYNAIRTGLVRLLCEELKSLLDFLPREGGAEESAIRVGFVTYNKVLHFY 231
Query: 322 D 322
+
Sbjct: 232 N 232
>pdb|3ZEF|B Chain B, Crystal Structure Of Prp8:aar2 Complex: Second Crystal
Form At 3.1 Angstrom Resolution
pdb|3ZEF|E Chain E, Crystal Structure Of Prp8:aar2 Complex: Second Crystal
Form At 3.1 Angstrom Resolution
Length = 1531
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 554 NDAALSIQMPSVEETQSFAVSM-----ENKRDIESNHVFFQFAIRYSNVYQADISRVVTV 608
N +A I M SV E + S+ ++ + + +N ++F +RY + DISR V
Sbjct: 813 NSSAADITMESVHEWEVSKPSLLHETNDSFKGLITNKMWFDVQLRYGDYDSHDISRYVRA 872
Query: 609 RL--PTVDSVSAY 619
+ T D+VS Y
Sbjct: 873 KFLDYTTDNVSMY 885
>pdb|4I43|B Chain B, Crystal Structure Of Prp8:aar2 Complex
Length = 1564
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 554 NDAALSIQMPSVEETQSFAVSM-----ENKRDIESNHVFFQFAIRYSNVYQADISRVVTV 608
N +A I M SV E + S+ ++ + + +N ++F +RY + DISR V
Sbjct: 846 NSSAADITMESVHEWEVSKPSLLHETNDSFKGLITNKMWFDVQLRYGDYDSHDISRYVRA 905
Query: 609 RL--PTVDSVSAY 619
+ T D+VS Y
Sbjct: 906 KFLDYTTDNVSMY 918
>pdb|3FFK|A Chain A, Crystal Structure Of Human Gelsolin Domains G1-G3 Bound To
Actin
pdb|3FFK|D Chain D, Crystal Structure Of Human Gelsolin Domains G1-G3 Bound To
Actin
Length = 377
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 739 EELPAYDLAMQSDKAVVLDHGTD--VFIWLGAELAADEGRS 777
+E P A++S+ +LDHG D +F+W G + +E ++
Sbjct: 268 DENPFAQGALKSEDCFILDHGKDGKIFVWKGKQANTEERKA 308
>pdb|3EFO|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF
SYNTAXIN 5
pdb|3EG9|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF
MEMBRIN
Length = 770
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 69/184 (37%), Gaps = 38/184 (20%)
Query: 165 KQANVPSLGFGALVSPGKEVSPS---LQII---QRDPHRCHNCGAFANIYCKILLGSGQW 218
KQA +P A++ P + + L ++ + P RC+ C A+ + + + G ++
Sbjct: 65 KQAQIP---LAAVIKPFATIPSNESPLYLVNHGESGPVRCNRCKAYMCPFMQFIEGGRRY 121
Query: 219 QCVICRNLNGSEGEYVAPSKEELRNF-----PELSSPMVDYVQTGNNRSSYVPVSDSRMS 273
QC C +N Y R PELS +YV T + R S
Sbjct: 122 QCGFCNCVNDVPPFYFQHLDHIGRRLDHYEKPELSLGSYEYVAT---------LDYCRKS 172
Query: 274 AP-----IILVID---ECLDEPHLQHLQSSLHAFVESIPP-------TARIGIILYGRTV 318
P I +ID + ++ + L +E IP R+G I Y + +
Sbjct: 173 KPPNPPAFIFMIDVSYSNIKNGLVKLICEELKTMLEKIPKEEQEETSAIRVGFITYNKVL 232
Query: 319 SVYD 322
++
Sbjct: 233 HFFN 236
>pdb|3FFN|A Chain A, Crystal Structure Of Calcium-Free Human Gelsolin
pdb|3FFN|B Chain B, Crystal Structure Of Calcium-Free Human Gelsolin
Length = 782
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 739 EELPAYDLAMQSDKAVVLDHGTD--VFIWLGAELAADEGRS 777
+E P A++S+ +LDHG D +F+W G + +E ++
Sbjct: 317 DENPFAQGALKSEDCFILDHGKDGKIFVWKGKQANTEERKA 357
>pdb|1RGI|G Chain G, Crystal Structure Of Gelsolin Domains G1-G3 Bound To Actin
Length = 346
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 739 EELPAYDLAMQSDKAVVLDHGTD--VFIWLGAELAADEGRS 777
+E P A++S+ +LDHG D +F+W G + +E ++
Sbjct: 265 DENPFAQGALRSEDCFILDHGKDGKIFVWKGKQANMEERKA 305
>pdb|1M2V|B Chain B, Crystal Structure Of The Yeast Sec2324 HETERODIMER
Length = 926
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 197 RCHNCGAFANIYCKILLGSGQWQCVICRNLN 227
RC C ++ N + + +W+C CR N
Sbjct: 230 RCRRCRSYMNPFVTFIEQGRRWRCNFCRLAN 260
>pdb|2JH8|A Chain A, The Structure Of Bluetongue Virus Vp4 Reveals A
Multifunctional Rna-capping Production-line
pdb|2JH9|A Chain A, The Structure Of Bluetongue Virus Vp4 Reveals A
Multifunctional Rna-Capping Production-Line
pdb|2JHA|A Chain A, The Structure Of Bluetongue Virus Vp4 Reveals A
Multifunctional Rna-Capping Production-Line
pdb|2JHC|A Chain A, The Structure Of Bluetongue Virus Vp4 Reveals A
Multifunctional Rna-Capping Production-Line
pdb|2JHP|A Chain A, The Structure Of Bluetongue Virus Vp4 Reveals A
Multifunctional Rna-Capping Production-Line
Length = 644
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 588 FQFAIRYSNVYQADISRVVTVRLPTVDSVSAYLSSFQDEVAAVLIAKRT----LLRAKIF 643
F F + NV ADI + V VR+P + S + +F++E+ I R LR F
Sbjct: 67 FIFISTHKNVQLADIIKTVDVRIPREVARSHDMKAFENEIGRRRIRMRKGFGDALRNYAF 126
Query: 644 SEAIDM 649
AI+
Sbjct: 127 KMAIEF 132
>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|B Chain B, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|C Chain C, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|D Chain D, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O34|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(13-32)k23ac Peptide
pdb|3O35|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O35|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O36|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O36|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O37|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|C Chain C, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|D Chain D, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
Length = 184
Score = 29.6 bits (65), Expect = 8.6, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 198 CHNCGAFANIYCKIL----LGSGQWQCVICRNLNGSEGEY 233
C C ++ C + SG+W C CR+L+ E EY
Sbjct: 19 CEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSKPEVEY 58
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,076,423
Number of Sequences: 62578
Number of extensions: 1018532
Number of successful extensions: 2149
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2105
Number of HSP's gapped (non-prelim): 32
length of query: 874
length of database: 14,973,337
effective HSP length: 107
effective length of query: 767
effective length of database: 8,277,491
effective search space: 6348835597
effective search space used: 6348835597
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)