BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 002844
         (874 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1UCG|A Chain A, Crystal Structure Of Ribonuclease Mc1 N71t Mutant
 pdb|1UCG|B Chain B, Crystal Structure Of Ribonuclease Mc1 N71t Mutant
          Length = 190

 Score = 32.0 bits (71), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 4/67 (5%)

Query: 700 RTHTHTLDIPPGPFDVTE----QQQGDFWMPTQNEARYDQFWDHDYGDRSETHLEASTSA 755
           ++ T   + P  PFD+T+    Q Q +   PT   A   QFW H++             A
Sbjct: 40  QSGTSLTNCPGSPFDITKISHLQSQLNTLWPTVLRANNQQFWSHEWTKHGTCSESTFNQA 99

Query: 756 PFFRESV 762
            +F+ +V
Sbjct: 100 AYFKLAV 106


>pdb|1J1F|A Chain A, Crystal Structure Of The Rnase Mc1 Mutant N71t In Complex
           With 5'-Gmp
          Length = 191

 Score = 30.8 bits (68), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 4/67 (5%)

Query: 700 RTHTHTLDIPPGPFDVTE----QQQGDFWMPTQNEARYDQFWDHDYGDRSETHLEASTSA 755
           ++ T   + P  PFD+T+    Q Q +   PT   A   QFW H++             A
Sbjct: 41  QSGTSLTNCPGSPFDITKISHLQSQLNTLWPTVLRANNQQFWSHEWTKHGTCSESTFNQA 100

Query: 756 PFFRESV 762
            +F+ +V
Sbjct: 101 AYFKLAV 107


>pdb|1BK7|A Chain A, Ribonuclease Mc1 From The Seeds Of Bitter Gourd
 pdb|1UCA|A Chain A, Crystal Structure Of The Ribonuclease Mc1 From Bitter
           Gourd Seeds Complexed With 2'-Ump
 pdb|1UCC|A Chain A, Crystal Structure Of The Ribonuclease Mc1 From Bitter
           Gourd Seeds Complexed With 3'-Ump.
 pdb|1UCD|A Chain A, Crystal Structure Of Ribonuclease Mc1 From Bitter Gourd
           Seeds Complexed With 5'-Ump
          Length = 190

 Score = 30.0 bits (66), Expect = 5.2,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 4/67 (5%)

Query: 700 RTHTHTLDIPPGPFDVTE----QQQGDFWMPTQNEARYDQFWDHDYGDRSETHLEASTSA 755
           ++ T   + P  PFD+T+    Q Q +   P    A   QFW H++             A
Sbjct: 40  QSGTSLTNCPGSPFDITKISHLQSQLNTLWPNVLRANNQQFWSHEWTKHGTCSESTFNQA 99

Query: 756 PFFRESV 762
            +F+ +V
Sbjct: 100 AYFKLAV 106


>pdb|1J1G|A Chain A, Crystal Structure Of The Rnase Mc1 Mutant N71s In Complex
           With 5'-Gmp
          Length = 190

 Score = 29.6 bits (65), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 4/67 (5%)

Query: 700 RTHTHTLDIPPGPFDVTE----QQQGDFWMPTQNEARYDQFWDHDYGDRSETHLEASTSA 755
           ++ T   + P  PFD+T+    Q Q +   P+   A   QFW H++             A
Sbjct: 40  QSGTSLTNCPGSPFDITKISHLQSQLNTLWPSVLRANNQQFWSHEWTKHGTCSESTFNQA 99

Query: 756 PFFRESV 762
            +F+ +V
Sbjct: 100 AYFKLAV 106


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.137    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,162,766
Number of Sequences: 62578
Number of extensions: 1125564
Number of successful extensions: 2041
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2040
Number of HSP's gapped (non-prelim): 8
length of query: 874
length of database: 14,973,337
effective HSP length: 107
effective length of query: 767
effective length of database: 8,277,491
effective search space: 6348835597
effective search space used: 6348835597
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)