Query 002845
Match_columns 874
No_of_seqs 153 out of 215
Neff 4.2
Searched_HMMs 46136
Date Thu Mar 28 11:57:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002845.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002845hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2173 Integral membrane prot 100.0 1E-177 2E-182 1485.4 41.9 748 14-858 64-849 (849)
2 PF04109 APG9: Autophagy prote 100.0 7E-134 1E-138 1096.2 32.5 356 200-568 1-370 (370)
3 KOG2173 Integral membrane prot 90.9 0.15 3.3E-06 61.4 2.9 72 581-655 651-732 (849)
4 PHA01351 putative minor struct 24.9 1.5E+02 0.0032 37.2 6.3 41 512-552 164-204 (1070)
5 PF01578 Cytochrom_C_asm: Cyto 23.1 5.2E+02 0.011 26.8 9.3 40 448-491 141-187 (214)
6 COG4988 CydD ABC-type transpor 21.6 2.3E+02 0.005 34.7 7.1 91 323-430 141-252 (559)
7 cd02436 Nodulin-21 Nodulin-21. 18.8 2.2E+02 0.0048 29.4 5.3 32 396-427 89-120 (152)
8 PF12349 Sterol-sensing: Stero 17.9 4.3E+02 0.0094 26.5 7.2 63 330-419 40-102 (153)
9 PF05461 ApoL: Apolipoprotein 17.3 2.7E+02 0.0058 31.6 6.1 69 367-442 60-128 (313)
10 KOG1134 Uncharacterized conser 17.1 1.5E+02 0.0032 37.4 4.4 30 320-349 560-589 (728)
No 1
>KOG2173 consensus Integral membrane protein [General function prediction only]
Probab=100.00 E-value=9.7e-178 Score=1485.36 Aligned_cols=748 Identities=47% Similarity=0.810 Sum_probs=624.3
Q ss_pred eeeccc-cCCCCcccccccCCCCCccccccCCCCCCCC----------------CCCCCC--CCCCCCCCCCCCCCChHH
Q 002845 14 VFRWKW-RGDSSLTTGLLNDVPPEIELSDYAHGRVPSP----------------GSESPA--GLLNGESLNVAPIADLDL 74 (874)
Q Consensus 14 ~~~~~~-~~~~~~~~~~~~~~~pei~~~dy~~~~~p~~----------------~~~sp~--~~l~~e~~~w~~VeNLD~ 74 (874)
..+|.. .+.+++++|.+ ...|.|++.+ ..+++ .+.+|+ +...+++.+|.||.|||+
T Consensus 64 ss~~~l~~~s~~~~~~~~--l~se~~~~~~---g~dSp~~~k~~~h~f~~t~sl~~~~p~~~~~~~~~s~n~~Hi~nlD~ 138 (849)
T KOG2173|consen 64 SSKWRLGEGSSSLTEGKL--LSSEEELSNE---GIDSPAPEKPETHYFQFTASLNNGSPSMAGLLNLESRNWQHIANLDS 138 (849)
T ss_pred hhhhhcCCCccccccccc--cccccccccc---CCCCCCCCCCCccccccchhccCCCccccccccccccCCcchhhhHH
Confidence 567776 67778888875 3333333322 22221 455565 678899999999999999
Q ss_pred HHHHHHHHHHhCCeehhhHHHHhhceeeeeeehhhhhhccccccccccccccCCcccccCCCCchhhhhhhccCCCccch
Q 002845 75 FFERLYSYYCEKGLRCIIIKWIVELLSLGFTICFSAFFLLFVDWDGLRNAKCGMDAVESGIKPCDLAKEALHEHPLTPLT 154 (874)
Q Consensus 75 Ff~~vY~Yy~~kGf~cIiL~~il~Llt~~FVv~FstFL~~CVDy~~L~~~~~~~~~~~~g~~~~d~~~e~i~~~~l~p~~ 154 (874)
|+++||+||++|||||||++++++|++++|||+|+||+++||||++|++++|++++ .++|++++|+|+++|+-|..
T Consensus 139 f~s~vY~Yy~~~G~~CIIv~k~~qlLt~~FVi~fstF~~~CVd~~~L~~~~~~~~~----n~~k~~~~Daiv~~~~C~a~ 214 (849)
T KOG2173|consen 139 FFSGVYSYYQGKGLWCIIVKKAFQLLTLGFVICFSTFFTHCVDWNGLFNATCGMDA----NKPKDLVGDAIVDKPLCPAN 214 (849)
T ss_pred HHHhhHhhhcCCceEEEEHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccc----CcccccccceeccCCcCchh
Confidence 99999999999999999999999999999999999999999999999999998765 58999999999999766665
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCCCCCCCcccchHHHHHHHHHhhcccccccc-ccCCHH
Q 002845 155 LSKAVIVGYLALFSIYWIFCFLRFFAQLKDTLGIRHFYYNSLHVTDSEIQTMPWATILEKVVQLQSSQQLCVV-KDLSAH 233 (874)
Q Consensus 155 ~~~~~~v~~Lvlfsiywi~~~ikf~~~L~~l~eIr~FY~~~L~IsD~eLqTIsW~eVV~rI~~lQ~~~~lci~-k~Ldah 233 (874)
...+++.+|++|++||++|++|+++++++++|||+||.++|+|.|+||+|++|++|++|||++|+++.+||+ |+||||
T Consensus 215 -~T~it~~~l~lf~vy~l~~~ik~~~~I~k~seir~FY~~~L~IaD~elpt~tWq~V~~ri~~lq~~~~l~ihk~~lta~ 293 (849)
T KOG2173|consen 215 -ITAITYFVLWLFSVYWLFRFIKFFADIKKLSEIRHFYYHALKIADDELPTLTWQEVLQRIVQLQKEQVLCIHKKRLTAH 293 (849)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCHHHHHHHHHHHHhccEEEEecccCcHH
Confidence 345566678899999999999999999999999999999999999999999999999999999999999999 589999
Q ss_pred HHHHHHhhhhchhhhhhccCCCCCCccccCCCCCCcccccCCCccceeecchhhhhhhhhhhcc---cccCCCcceeccc
Q 002845 234 DVVMRLMRKENYLIGMLNKGVLAFPIYSWVPGAGPTVRFGSDGVQHRLILTKTLEWTLNWCILQ---SMFDRNFCVRRDF 310 (874)
Q Consensus 234 DIanRIMRkENYLIAmiNK~IL~lpip~~lP~~Gp~~~~~~~g~k~~~~LtktLEWnL~~cI~~---~~Fd~~~~lr~~f 310 (874)
||||||||||||||||+||+||++++| +|+.| + ..|||+||||++||+|. ++|+++||||++|
T Consensus 294 dI~hRImR~eNYlialiNk~iL~~~f~--ip~~g-~-----------~~lt~~l~~ni~~~lf~~~~~~f~n~~~lr~e~ 359 (849)
T KOG2173|consen 294 DIYHRIMRKENYLIALINKGILNLRFP--IPLLG-A-----------VPLTKTLEWNINLILFLGPTSVFTNNWQLRQEY 359 (849)
T ss_pred HHHHHHHHhhhhhHHHhhcCccccccc--ccccc-c-----------eeccccCccceeEEEEcCCCcccccchhHHHHH
Confidence 999999999999999999999975555 45544 2 35899999999999999 9999999999999
Q ss_pred ccC------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccchhhhhhhhcccchhhHHh
Q 002845 311 VSN------PKTLRKRLMVVGLAILLLSPFLVIFMVVYLFLRHAEQFYNHPSTASSRRWSNLSKWMFREFNEVDHLFKHR 384 (874)
Q Consensus 311 l~~------~~~LrkRf~~~GilNllLsPFIviy~lly~FFrYaee~k~~PsslgsRrWSp~ArWkfREFNELpH~f~~R 384 (874)
++. +++|||||+++|++|++||||+++|+++|+||||||++|++||++|+|+|||+|+|+|||||||+|+|++|
T Consensus 360 ~~~~qr~~~a~~Lkkr~i~~gllnlllaP~l~i~~v~~~ffrYan~l~~~PGal~tR~ws~~~~w~fRefNELdH~f~~R 439 (849)
T KOG2173|consen 360 KDPNQRVRLAEELKKRFIVAGLLNLLLAPFLVIYQVLYLFFRYANELKTEPGALGTRRWSPLARWLFREFNELDHEFKAR 439 (849)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 763 57999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCchhHHHhhccCCchHHHHHHHHHHHHhhhHHHHHHHHHhcCcccccccccCchHHHHHHHHHHHHHhhcccccccc
Q 002845 385 INSSVVHSSDYLKQFPSPIISILAKFISFVSGGFAAVLIIIAFLEESLLEGHIFGRNLLWYAAVFGTITAISRAAVTDEL 464 (874)
Q Consensus 385 L~~Sy~~A~~YL~qFPs~~l~iIAkfVsFvaGS~~AVLiiLsllDe~lL~~~v~gRtlLwyitV~GtI~AvsRs~IpdE~ 464 (874)
||+||.+|++||+|||||+++++||+|+||+|||+|||++||++||++|..+..+++|+||+|+||+|+||||++||||+
T Consensus 440 iNrs~~~As~Y~~qFpsp~~~i~aK~vsFI~Gsf~avL~iltv~de~vl~v~hi~~dv~fylti~G~i~~VsR~~IpDE~ 519 (849)
T KOG2173|consen 440 INRSYVYASKYVDQFPSPLLSIIAKNVSFISGSFLAVLIILTVFDEEVLQVEHITTDVFFYLTILGAIVAVSRSAIPDEN 519 (849)
T ss_pred hhhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhHHHHHHHHHHHhCHHHhhhhhhhhhHHHHHHHHhHHHHhhhcccCccc
Confidence 99999999999999999999999999999999999999999999999998666667799999999999999999999999
Q ss_pred ccCCHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHhhhcce
Q 002845 465 LVLDPEGAMSIVVQHTHYMPKRWRGKENTEMVRIEFETIFQYTGMMLLEEMASIFLTPLLLLFVVPKRVDDILQFIADYT 544 (874)
Q Consensus 465 ~V~dPE~lm~~Vv~~THYlP~~WrG~aHT~eVr~EFs~LFq~K~v~fLeELlS~ilTPfIL~FsLp~~a~~IVDFfRefT 544 (874)
.|||||++|+.|++||||||++|||++|+.+||.|||+|||||+|++|+||+|||+|||||||+||+||++||||||+||
T Consensus 520 lVf~PE~lm~~v~~~tHYmP~~W~gkaH~~~Vr~EF~~Lfqyk~v~lL~Ei~S~~iTPfvL~F~lppra~~IvdFFrdfT 599 (849)
T KOG2173|consen 520 LVFDPEQLMTLVLAHTHYMPKEWRGKAHKTDVRLEFCQLFQYKIVFLLEEITSPFITPFVLIFVLPPRADDIVDFFRDFT 599 (849)
T ss_pred eeecHHHHHHHHHHHhccCchhhccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhcchheeeecCchHHHHHHHHHhce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCcccccccccccccCCCC-CCCCCCCCCCCcccccCChhHHHHhhhhhcCCCCCCChhhHHHHHHHHHHHHHhhhc
Q 002845 545 VDVEGVGHVCSFSTFDFQNHGN-SNYGSPYHTPRTQRSSQGKMEKSFLSFQSSYPSWEPNAQGKQFLLNLRSFRERKVRG 623 (874)
Q Consensus 545 V~VdGvG~VCSFA~FDf~rhGn-~~~~sp~~~~~~~rs~~GKME~S~l~F~~~yP~W~P~~~g~~fL~~L~~f~~~~~~~ 623 (874)
|+|+|||||||||+|||++||| |.|.++ +++|||++|++.+.+.+|+|+-.+.||..|+.++-++-.
T Consensus 600 v~V~GvG~vCsfaqf~~~~hgniPd~~~~--------~e~~e~t~s~~~~~s~~~s~~s~a~gk~~ls~~~~~r~~---- 667 (849)
T KOG2173|consen 600 VDVEGVGYVCSFAQFNFRNHGNIPDWALA--------SEQGELTKSIVSQQSSYPSWESDALGKTELSLLRFFRID---- 667 (849)
T ss_pred eeeecccchhhHHHhhHhhcCCCcccccc--------chhhhhhhhhccccccCcchhhccCCCCcccccchhhcc----
Confidence 9999999999999999999999 777553 456999999999999999999999999999877666511
Q ss_pred ccCCCccCCCccccCCCCCCCCCCCcchhccccCCCCCCCCCCCCccccccCCCCCCCeeeeeeeccccCccCCCCcccc
Q 002845 624 QGNRHAYSSPRLWRGSPSLRVHGERNSSLSREWPYNAHGTGYQLGSLWLIDEEPRNHPYLLDWYYTSQHQQTAGHTRTHT 703 (874)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (874)
+ +. |+.. |+.-.|.|.. ++---.|..-.+.|..|.|| ++||||+++-+.++..- ..
T Consensus 668 ----n----p~-wq~~-------~~~~~f~~d~-r~~~l~~~~q~~~~~~~pn~-----~~ds~~~~~~s~r~~~~--~~ 723 (849)
T KOG2173|consen 668 ----N----PE-WQMP-------QEAKAFLRDI-RNPLLSGLYQDSMWAADPNQ-----LLDSLYASQCSIRTDHP--IE 723 (849)
T ss_pred ----C----cc-cccc-------cchhhhhccc-chhhhhhhhccchhhcCCcc-----ccchhhhccccccccCC--cc
Confidence 1 11 4432 3444566654 32223355558899999999 99999999987774331 01
Q ss_pred ccCCCCCCCCcccccccCCCCCCCcchhhhccccccchhhhhhhhcccccchhhhhhhhccccCCCCCCCCccccccccc
Q 002845 704 HTLDIPPGPFDVTEQQQGDFWMPTQNEARYDQFWDHDYGDRSETHLEASTSAPFFRESVLQHHDSNNLAQPTRSHWWART 783 (874)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 (874)
.. ..+|-+. ..+.|++. +-+..+ .-++++.+++++++.||++ .+.. +
T Consensus 724 r~----~~l~l~g---~~sl~pg~-~~isgg-------~~s~~n~~~~~~q~nf~~~--------~~~g-----q----- 770 (849)
T KOG2173|consen 724 RA----NELFLAG---ATSLWPGD-LGISGG-------DSSDLNNMEASTQGNFFRE--------GNHG-----Q----- 770 (849)
T ss_pred cc----chhhhcc---ccccCCCC-CCCCCC-------Cchhccchhhhhhcccccc--------CCCC-----C-----
Confidence 11 1112111 34444431 111111 2356778899999999922 2221 1
Q ss_pred CCCCCCCCCcccCCCCCCCCccccccCCC-CCcCCHHH---HHhhhhcccc--cccccccchh--hhhccCCcccccccc
Q 002845 784 SPHDAQPQSSFLEPPDFNHYTAQTNVHDN-LSERSLEE---QEQFLYWRNS--HKLSRTSYID--DLEAGSGDVNLHFDD 855 (874)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~ 855 (874)
+.+.-...+|.+|||++|++.-+++-.+ .++++.++ .+..+.|-+. +.+++|.++| |.++| -.+||+|
T Consensus 771 -~ap~vgtn~~~~~~dd~n~~~~~~~~ln~~~~~s~~ep~~e~~D~~~p~nS~~n~r~~l~p~~~~g~~~---e~~~~~d 846 (849)
T KOG2173|consen 771 -TAPPVGTNSFIEPPDDINRYTAGNLLLNSWSRRSIEEPDEEEEDLDWPENSRRNLRRTLFPDDNDGEAG---EDLHFDD 846 (849)
T ss_pred -cCCCCCCCcccCCCcchhhhhHHHHHhHHHHHhccCCCcccccccCCcccccCCCCCCcCCCCcccccc---ceeeccc
Confidence 2223345789999999999844444332 33344433 2233355433 3488999999 66666 7899999
Q ss_pred CCC
Q 002845 856 IYN 858 (874)
Q Consensus 856 ~~~ 858 (874)
+++
T Consensus 847 v~~ 849 (849)
T KOG2173|consen 847 VYS 849 (849)
T ss_pred ccC
Confidence 975
No 2
>PF04109 APG9: Autophagy protein Apg9 ; InterPro: IPR007241 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg9 plays a direct role in the formation of the cytoplasm to vacuole targeting and autophagic vesicles, possibly serving as a marker for a specialised compartment essential for these vesicle-mediated alternative targeting pathways [].
Probab=100.00 E-value=6.8e-134 Score=1096.20 Aligned_cols=356 Identities=50% Similarity=0.935 Sum_probs=345.5
Q ss_pred CCCCcccchHHHHHHHHHhhccccccc------cccCCHHHHHHHHhhhhchhhhhhccCCCCCCccccCCCCCCccccc
Q 002845 200 DSEIQTMPWATILEKVVQLQSSQQLCV------VKDLSAHDVVMRLMRKENYLIGMLNKGVLAFPIYSWVPGAGPTVRFG 273 (874)
Q Consensus 200 D~eLqTIsW~eVV~rI~~lQ~~~~lci------~k~LdahDIanRIMRkENYLIAmiNK~IL~lpip~~lP~~Gp~~~~~ 273 (874)
|+|||||+|+|||+|||++|+++++|+ +++||||||||||||||||||||+||+||++.+| +|++|+
T Consensus 1 D~dlqti~W~eVv~ri~~lq~~~~~~~~~~~~~k~~lda~dIanRIMR~eNYlIam~Nk~iL~l~lp--~P~~~~----- 73 (370)
T PF04109_consen 1 DSDLQTITWQEVVERIMALQDQNPLCIHNDSKSKKRLDAHDIANRIMRKENYLIAMINKDILDLTLP--LPFLGN----- 73 (370)
T ss_pred CCccccCCHHHHHHHHHHHhhcCCCcccccccccCCCCHHHHHHHHHHHhhhhHhhhccCcCCCcCC--CCCccc-----
Confidence 789999999999999999999999999 5699999999999999999999999999987665 566544
Q ss_pred CCCccceeecchhhhhhhhhhhcccccCCCcceecccccC------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002845 274 SDGVQHRLILTKTLEWTLNWCILQSMFDRNFCVRRDFVSN------PKTLRKRLMVVGLAILLLSPFLVIFMVVYLFLRH 347 (874)
Q Consensus 274 ~~g~k~~~~LtktLEWnL~~cI~~~~Fd~~~~lr~~fl~~------~~~LrkRf~~~GilNllLsPFIviy~lly~FFrY 347 (874)
+.+|||+|||||+|||+++|||++|++|++|+++ +++|||||+++|++|++|||||++|+++|+||+|
T Consensus 74 ------~~~ltk~lewnl~~~l~~~~Fd~~~~~~~~f~~~~~r~~l~~~Lr~Rf~~~gi~nlll~Pfi~i~~il~~ff~y 147 (370)
T PF04109_consen 74 ------RQFLTKTLEWNLNLCLFDSMFDNNGQLRPEFLKNSRRKELAEELRKRFRLAGILNLLLSPFILIYQILYFFFKY 147 (370)
T ss_pred ------ceeecHHHHHHHHHHHhccccCCCCcccHHHcChhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999998 6899999999999999999999999999999999
Q ss_pred HHHHhcCCCcccccccccchhhhhhhhcccchhhHHhhhcCchhHHHhhccCCchHHHHHHHHHHHHhhhHHHHHHHHHh
Q 002845 348 AEQFYNHPSTASSRRWSNLSKWMFREFNEVDHLFKHRINSSVVHSSDYLKQFPSPIISILAKFISFVSGGFAAVLIIIAF 427 (874)
Q Consensus 348 aee~k~~PsslgsRrWSp~ArWkfREFNELpH~f~~RL~~Sy~~A~~YL~qFPs~~l~iIAkfVsFvaGS~~AVLiiLsl 427 (874)
||++|+|||++|+|+|||||+|||||||||||+|++||++||++|++||+||||++++++||+|+|||||++|||+++|+
T Consensus 148 ~e~~~~~P~~lg~R~ws~~A~w~fRefNELpH~f~~RL~~sy~~A~~Yi~qFps~~~~~iar~v~Fv~Gs~~aVl~~lsl 227 (370)
T PF04109_consen 148 AEEFKKNPGSLGARRWSPYARWKFREFNELPHEFQRRLNRSYKPANKYIDQFPSPKLSIIARFVSFVAGSFAAVLILLSL 227 (370)
T ss_pred HHHHhhChHhhcccCCchHHHHHhhhhccchHHHHHHHHhhHHHHHHHHHHCCchHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccc-cccc-CchHHHHHHHHHHHHHhhccccccccccCCHHHHHHHHHHhhccCCCCCCCCCchHHHHHHHHHhhH
Q 002845 428 LEESLLE-GHIF-GRNLLWYAAVFGTITAISRAAVTDELLVLDPEGAMSIVVQHTHYMPKRWRGKENTEMVRIEFETIFQ 505 (874)
Q Consensus 428 lDe~lL~-~~v~-gRtlLwyitV~GtI~AvsRs~IpdE~~V~dPE~lm~~Vv~~THYlP~~WrG~aHT~eVr~EFs~LFq 505 (874)
+||++|. ++++ |||+|||+||+|+|+||||++||||+.|+|||++|++|++||||+|++|||++||.+||+||++|||
T Consensus 228 ~d~~~l~~~ei~~~~~vl~~itv~g~i~av~r~~ip~e~~v~~Pe~~l~~v~~~tHY~p~~W~g~~ht~~v~~eF~~lf~ 307 (370)
T PF04109_consen 228 LDEDLLLSFEITPGRTVLWYITVFGTIWAVCRSMIPDENEVFDPEELLREVVEHTHYMPDEWRGKAHTEEVRDEFSQLFQ 307 (370)
T ss_pred cCHHHhheeeecCCccHHHHHHHHHHHHHHhcccCCccccccCHHHHHHHHHHhcCcCchhhcCCcCcHHHHHHHHHHHH
Confidence 9999876 6676 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHhhhcceeeecCcccccccccccccCCCCCC
Q 002845 506 YTGMMLLEEMASIFLTPLLLLFVVPKRVDDILQFIADYTVDVEGVGHVCSFSTFDFQNHGNSN 568 (874)
Q Consensus 506 ~K~v~fLeELlS~ilTPfIL~FsLp~~a~~IVDFfRefTV~VdGvG~VCSFA~FDf~rhGn~~ 568 (874)
+|+++|||||+|+|+|||||||+||+||++||||||+|||+|||||||||||+|||+||||++
T Consensus 308 ~k~~~~l~Ei~S~i~tPfiL~f~Lp~~a~~IvdF~r~~TV~V~GvG~VCsfA~fdf~~~g~~~ 370 (370)
T PF04109_consen 308 YKAVIFLEEILSPILTPFILWFSLPKCADEIVDFFREFTVHVDGVGYVCSFAQFDFKRHGNPN 370 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHhceeecCCCCCeeeeceeccccCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999985
No 3
>KOG2173 consensus Integral membrane protein [General function prediction only]
Probab=90.93 E-value=0.15 Score=61.42 Aligned_cols=72 Identities=22% Similarity=0.236 Sum_probs=50.7
Q ss_pred ccCChhHHHHhhhh-hcCCCCCCChhhHHHHHHHHHHHHH-hhhcccCC--------CccCCCccccCCCCCCCCCCCcc
Q 002845 581 SSQGKMEKSFLSFQ-SSYPSWEPNAQGKQFLLNLRSFRER-KVRGQGNR--------HAYSSPRLWRGSPSLRVHGERNS 650 (874)
Q Consensus 581 s~~GKME~S~l~F~-~~yP~W~P~~~g~~fL~~L~~f~~~-~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~ 650 (874)
..-||.|+|.++|. .++|+|+|+..+++|+...|+-... +.+.++.+ --..+.++||++ ..++|.++
T Consensus 651 ~a~gk~~ls~~~~~r~~np~wq~~~~~~~f~~d~r~~~l~~~~q~~~~~~~pn~~~ds~~~~~~s~r~~---~~~~r~~~ 727 (849)
T KOG2173|consen 651 DALGKTELSLLRFFRIDNPEWQMPQEAKAFLRDIRNPLLSGLYQDSMWAADPNQLLDSLYASQCSIRTD---HPIERANE 727 (849)
T ss_pred ccCCCCcccccchhhccCcccccccchhhhhcccchhhhhhhhccchhhcCCccccchhhhcccccccc---CCccccch
Confidence 34599999999999 8999999999999999854322111 11111111 011245789999 89999999
Q ss_pred hhccc
Q 002845 651 SLSRE 655 (874)
Q Consensus 651 ~~~~~ 655 (874)
+|.+-
T Consensus 728 l~l~g 732 (849)
T KOG2173|consen 728 LFLAG 732 (849)
T ss_pred hhhcc
Confidence 99774
No 4
>PHA01351 putative minor structural protein
Probab=24.89 E-value=1.5e+02 Score=37.24 Aligned_cols=41 Identities=24% Similarity=0.535 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHhhhcCCCchhHHHHhhhcceeeecCccc
Q 002845 512 LEEMASIFLTPLLLLFVVPKRVDDILQFIADYTVDVEGVGH 552 (874)
Q Consensus 512 LeELlS~ilTPfIL~FsLp~~a~~IVDFfRefTV~VdGvG~ 552 (874)
+-..+++++.|+...-.||.-.+.+-|-+-+|+++..-||-
T Consensus 164 ~~~~l~~~i~p~~i~r~lp~~vdklaellpef~i~lapvg~ 204 (1070)
T PHA01351 164 LSQFLSPFIAPITIGKFLPVIVDKLAEILPEFEIDLAPVGL 204 (1070)
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHhCccceeccccccc
Confidence 34568899999999999999999999999999999988874
No 5
>PF01578 Cytochrom_C_asm: Cytochrome C assembly protein; InterPro: IPR002541 This entry consists of various proteins involved in cytochrome c assembly from mitochondria and bacteria; CycK from Rhizobium leguminosarum [], CcmC from Escherichia coli and Paracoccus denitrificans [, ] and orf240 from Triticum aestivum (Wheat) mitochondria []. The members of this family are probably integral membrane proteins with six predicted transmembrane helices that may comprise the membrane component of an ABC (ATP binding cassette) transporter complex. This transporter may be necessary for transport of some component needed for cytochrome c assembly. One member, R. leguminosarum CycK, contains a putative haem-binding motif []. Wheat orf240 also contains a putative haem-binding motif and is a proposed ABC transporter with c-type haem as its proposed substrate []. However it seems unlikely that all members of this family transport haem or c-type apocytochromes because P. denitrificans CcmC transports neither [].; GO: 0006461 protein complex assembly, 0008535 respiratory chain complex IV assembly, 0016020 membrane
Probab=23.07 E-value=5.2e+02 Score=26.75 Aligned_cols=40 Identities=25% Similarity=0.421 Sum_probs=22.9
Q ss_pred HHHHHHHhhccccccccccCCHHHHHHH-------HHHhhccCCCCCCCCC
Q 002845 448 VFGTITAISRAAVTDELLVLDPEGAMSI-------VVQHTHYMPKRWRGKE 491 (874)
Q Consensus 448 V~GtI~AvsRs~IpdE~~V~dPE~lm~~-------Vv~~THYlP~~WrG~a 491 (874)
+.|++|| + ..=...-.+||.+...- +.-|.|+.. .||||.
T Consensus 141 ~~G~~wa--~-~~wG~~w~wDpk~~~sli~Wl~y~~~lh~r~~~-~~~gr~ 187 (214)
T PF01578_consen 141 ITGAIWA--K-DSWGSYWSWDPKEVWSLITWLVYGAYLHLRSWK-GWRGRR 187 (214)
T ss_pred ccHHHHH--H-HhccchhHHhHHHHHHHHHHHHHHHHHHHHHhh-chhhHH
Confidence 5677777 1 11123468899987443 334555533 777765
No 6
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=21.61 E-value=2.3e+02 Score=34.70 Aligned_cols=91 Identities=25% Similarity=0.451 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccchhh------------hhhhhcccchhhHHhhhcCch
Q 002845 323 VVGLAILLLSPFLVIFMVVYLFLRHAEQFYNHPSTASSRRWSNLSKW------------MFREFNEVDHLFKHRINSSVV 390 (874)
Q Consensus 323 ~~GilNllLsPFIviy~lly~FFrYaee~k~~PsslgsRrWSp~ArW------------kfREFNELpH~f~~RL~~Sy~ 390 (874)
..|++.++.+|+|-+|+++.-.-. .....|+|+-|++. ++|-||- .+.-++|+...
T Consensus 141 ~aalIllit~PlIPlfMilvg~~a---------~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~-~~~~~~~i~~~-- 208 (559)
T COG4988 141 AAALILLITAPLIPLFMILVGLAA---------KDASEKQFSALARLSGHFLDRLRGLETLRAFGR-TEATEERIRKD-- 208 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------hHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcc-cHHHHHHHHHH--
Confidence 467899999999999998865421 23456777777765 3555552 23333444322
Q ss_pred hHHHhhccCCchH---------HHHHHHHHHHHhhhHHHHHHHHHhcCc
Q 002845 391 HSSDYLKQFPSPI---------ISILAKFISFVSGGFAAVLIIIAFLEE 430 (874)
Q Consensus 391 ~A~~YL~qFPs~~---------l~iIAkfVsFvaGS~~AVLiiLsllDe 430 (874)
|. +|=+.. -+.+.-|++.++=+++||.+.+.++++
T Consensus 209 -se----~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~ 252 (559)
T COG4988 209 -SE----DFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGE 252 (559)
T ss_pred -HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 11 122222 133667888888888999999988875
No 7
>cd02436 Nodulin-21 Nodulin-21. Nodulin-21: This is a family of proteins that may be unique to certain plants. The family member in soybean is found to be nodule-specific and is abundant during nodule development. The proteins of this family thus may play a role in symbiotic nitrogen fixation.
Probab=18.83 E-value=2.2e+02 Score=29.42 Aligned_cols=32 Identities=28% Similarity=0.360 Sum_probs=27.1
Q ss_pred hccCCchHHHHHHHHHHHHhhhHHHHHHHHHh
Q 002845 396 LKQFPSPIISILAKFISFVSGGFAAVLIIIAF 427 (874)
Q Consensus 396 L~qFPs~~l~iIAkfVsFvaGS~~AVLiiLsl 427 (874)
.++.++|..+-++.+++|..|+++=+|.++-+
T Consensus 89 ~~~~~~P~qAA~aSa~sF~~Ga~lPll~~~fl 120 (152)
T cd02436 89 RRQAPSPSSAATASALSFAAGALFPLLAAWFV 120 (152)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34789999999999999999999877776643
No 8
>PF12349 Sterol-sensing: Sterol-sensing domain of SREBP cleavage-activation
Probab=17.91 E-value=4.3e+02 Score=26.53 Aligned_cols=63 Identities=25% Similarity=0.392 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccchhhhhhhhcccchhhHHhhhcCchhHHHhhccCCchHHHHHHH
Q 002845 330 LLSPFLVIFMVVYLFLRHAEQFYNHPSTASSRRWSNLSKWMFREFNEVDHLFKHRINSSVVHSSDYLKQFPSPIISILAK 409 (874)
Q Consensus 330 lLsPFIviy~lly~FFrYaee~k~~PsslgsRrWSp~ArWkfREFNELpH~f~~RL~~Sy~~A~~YL~qFPs~~l~iIAk 409 (874)
-..||+++-.-+---|..++.+++.|..... ++|+.++...+ -|+-..+.+..
T Consensus 40 e~~PFlvl~iG~dn~f~l~~~~~~~~~~~~~---------------------~~ri~~al~~~------G~si~~t~l~~ 92 (153)
T PF12349_consen 40 EVLPFLVLGIGVDNMFVLARAVRRTPSSLPV---------------------PERIAEALSRV------GPSILLTSLTE 92 (153)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcccccH---------------------HHHHHHHHHHH------hHHHHHHHHHH
Confidence 3579999888888888899988877654433 78887775443 45556667777
Q ss_pred HHHHHhhhHH
Q 002845 410 FISFVSGGFA 419 (874)
Q Consensus 410 fVsFvaGS~~ 419 (874)
.++|.+|++.
T Consensus 93 ~~af~~~~~~ 102 (153)
T PF12349_consen 93 IVAFLIGAFS 102 (153)
T ss_pred HHHHHHHHHh
Confidence 8888888764
No 9
>PF05461 ApoL: Apolipoprotein L; InterPro: IPR008405 Apo L belongs to the high density lipoprotein family that plays a central role in cholesterol transport. The cholesterol content of membranes is important in cellular processes such as modulating gene transcription and signal transduction both in the adult brain and during neurodevelopment. There are six apo L genes located in close proximity to each other on chromosome 22q12 in humans. 22q12 is a confirmed high-susceptibility locus for schizophrenia and close to the region associated with velocardiofacial syndrome that includes symptoms of schizophrenia []. The various functions of apoL are still not entirely clear. Apolipoprotein L-I has been identified as a trypanolytic agent [] and displays similar phylogenetic distribution to the programmed cell death protein Bcl-2 and BH-3 domain-containing proteins, suggesting a possible role in apoptosis [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region
Probab=17.25 E-value=2.7e+02 Score=31.64 Aligned_cols=69 Identities=13% Similarity=0.290 Sum_probs=49.7
Q ss_pred hhhhhhhhcccchhhHHhhhcCchhHHHhhccCCchHHHHHHHHHHHHhhhHHHHHHHHHhcCcccccccccCchH
Q 002845 367 SKWMFREFNEVDHLFKHRINSSVVHSSDYLKQFPSPIISILAKFISFVSGGFAAVLIIIAFLEESLLEGHIFGRNL 442 (874)
Q Consensus 367 ArWkfREFNELpH~f~~RL~~Sy~~A~~YL~qFPs~~l~iIAkfVsFvaGS~~AVLiiLsllDe~lL~~~v~gRtl 442 (874)
.+|.+++|.++-=.++.+|.+=|..|++ ++.+=+ -..|++.|+=.+|...+|+.|+++. |...++|-++
T Consensus 60 ~~~FL~~Fp~~k~~Le~~I~kL~~lAd~-idk~Hk--~~tisnvv~ss~g~vsGilsIlGLa----LAPvT~G~SL 128 (313)
T PF05461_consen 60 RERFLKEFPQLKEELEEHIRKLRALADE-IDKVHK--DCTISNVVGSSTGAVSGILSILGLA----LAPVTAGGSL 128 (313)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHH--hhHHHHHHhhhHHHHhhHHHHHhHH----hccccccchH
Confidence 7899999999999999999999988876 565543 3345666666666666777777663 3334555554
No 10
>KOG1134 consensus Uncharacterized conserved protein [General function prediction only]
Probab=17.14 E-value=1.5e+02 Score=37.36 Aligned_cols=30 Identities=20% Similarity=0.506 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002845 320 RLMVVGLAILLLSPFLVIFMVVYLFLRHAE 349 (874)
Q Consensus 320 Rf~~~GilNllLsPFIviy~lly~FFrYae 349 (874)
=+..+|++..+.||.|+.|-++|+++.|.-
T Consensus 560 ~~f~i~i~YsviaPlILpF~lvyF~l~y~v 589 (728)
T KOG1134|consen 560 LIFTIGICYSVIAPLILPFGLVYFCLAYLV 589 (728)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 367888999999999999999999999875
Done!