Query 002845
Match_columns 874
No_of_seqs 153 out of 215
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 03:52:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002845.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002845hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ug1_A KIAA1010 protein; struc 10.2 34 0.0012 31.2 -1.5 35 761-799 43-77 (92)
2 2rdd_B UPF0092 membrane protei 8.7 2.2E+02 0.0077 21.3 2.7 15 331-345 6-20 (37)
3 3e1k_B Lactose regulatory prot 7.4 1E+02 0.0035 21.2 0.3 18 832-855 3-20 (22)
4 3tgu_G UQCRQ, mitochondrial ub 7.1 5.4E+02 0.019 22.7 4.8 29 329-357 47-76 (81)
5 2xes_A Protein PAT1 homolog 1; 7.0 2.5E+02 0.0084 29.4 3.0 65 339-411 168-232 (248)
6 3bts_E Regulatory protein GAL4 6.8 1.2E+02 0.0039 21.7 0.3 22 834-862 3-24 (26)
7 3arc_H Photosystem II reaction 6.3 4E+02 0.014 22.9 3.4 21 322-342 28-48 (65)
8 1pp9_G Ubiquinol-cytochrome C 6.2 7.9E+02 0.027 21.6 5.4 29 329-357 47-76 (81)
9 1xou_A ESPA; coiled coil, heli 5.7 1.3E+02 0.0043 30.6 0.0 24 533-556 104-129 (192)
10 3arc_X Photosystem II PSBX pro 5.7 3.7E+02 0.013 21.1 2.6 17 411-427 11-27 (39)
No 1
>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical protein BAA76854.1, riken structural genomics/proteomics initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=10.20 E-value=34 Score=31.17 Aligned_cols=35 Identities=23% Similarity=0.410 Sum_probs=22.9
Q ss_pred hhccccCCCCCCCCcccccccccCCCCCCCCCcccCCCC
Q 002845 761 SVLQHHDSNNLAQPTRSHWWARTSPHDAQPQSSFLEPPD 799 (874)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (874)
++++.+|...| .+.||.+.+-.-+=-..+||||=+
T Consensus 43 AVl~k~Dp~Gn----~srW~Vdtgg~~GyvPs~yLe~~~ 77 (92)
T 1ug1_A 43 GVIKKKDPMGS----QNRWLIDNGVTKGFVYSSFLKPYN 77 (92)
T ss_dssp EEEESCCTTSC----SSEEEEECSSSEEEEEGGGEEECC
T ss_pred EEEecCCCCCC----CcceEEECCCcEEeeEhhhceEcc
Confidence 47788887776 569998874322223458888743
No 2
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=8.65 E-value=2.2e+02 Score=21.35 Aligned_cols=15 Identities=13% Similarity=0.478 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHH
Q 002845 331 LSPFLVIFMVVYLFL 345 (874)
Q Consensus 331 LsPFIviy~lly~FF 345 (874)
+.|+++++.++|++.
T Consensus 6 ~l~~v~~~~ifYFl~ 20 (37)
T 2rdd_B 6 ILMLVVFGLIFYFMI 20 (37)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 457887777777664
No 3
>3e1k_B Lactose regulatory protein LAC9; transctiption, repressor, trans-activation, carbohydrate metabolism, DNA-binding, galactose metabolism; 3.00A {Kluyveromyces lactis}
Probab=7.42 E-value=1e+02 Score=21.22 Aligned_cols=18 Identities=39% Similarity=0.615 Sum_probs=14.0
Q ss_pred ccccccchhhhhccCCcccccccc
Q 002845 832 KLSRTSYIDDLEAGSGDVNLHFDD 855 (874)
Q Consensus 832 ~~~~~~~~~~~~~~~~~~~~~~~~ 855 (874)
.|-.|+-|||+ +|..|||
T Consensus 3 ~mfntttmddv------ynylfd~ 20 (22)
T 3e1k_B 3 QLFNTTTMDDV------YNYIFDN 20 (26)
T ss_pred cccccccHHHH------HHHhccC
Confidence 45578889999 7778876
No 4
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=7.08 E-value=5.4e+02 Score=22.69 Aligned_cols=29 Identities=17% Similarity=0.329 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hcCCCc
Q 002845 329 LLLSPFLVIFMVVYLFLRHAEQF-YNHPST 357 (874)
Q Consensus 329 llLsPFIviy~lly~FFrYaee~-k~~Pss 357 (874)
.++-|||+.|.+.----++.|.+ +|||..
T Consensus 47 ~v~pPfi~~Y~i~~Wa~~~ne~l~rKnpad 76 (81)
T 3tgu_G 47 KVAPPFLGAYLLYSWGTQEFERLKRKNPAD 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCCGGG
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 45569988888776666666665 588864
No 5
>2xes_A Protein PAT1 homolog 1; mRNA decapping, P-bodies, RNA binding protein; 2.10A {Homo sapiens} PDB: 2xer_A 2xeq_A
Probab=6.98 E-value=2.5e+02 Score=29.42 Aligned_cols=65 Identities=12% Similarity=0.352 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHhcCCCcccccccccchhhhhhhhcccchhhHHhhhcCchhHHHhhccCCchHHHHHHHHH
Q 002845 339 MVVYLFLRHAEQFYNHPSTASSRRWSNLSKWMFREFNEVDHLFKHRINSSVVHSSDYLKQFPSPIISILAKFI 411 (874)
Q Consensus 339 ~lly~FFrYaee~k~~PsslgsRrWSp~ArWkfREFNELpH~f~~RL~~Sy~~A~~YL~qFPs~~l~iIAkfV 411 (874)
-+++.++.-+|.++.+......-.|+..-.-+.+-||||-+.=++=|... + .||+++++.++|++
T Consensus 168 SlLt~LLsRaE~L~~~~~~~~~~~~~~W~~~~~~l~~~l~~~p~~sl~~p-------~-~~p~~l~~~f~r~~ 232 (248)
T 2xes_A 168 SLLLILLSRGEDLQSSDPATESTQNNQWTEVMFMATRELLRIPQAALAKP-------I-SIPTNLVSLFSRYV 232 (248)
T ss_dssp HHHHHHHHHHHHHHTC--------CHHHHHHHHHHHHHHHHSCGGGCCCC-------S-CCCTTHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHhCchhhcccc-------c-cCCccHHHHHHHhc
Confidence 34788889999999875544334555555556666666666533333221 2 68999999999975
No 6
>3bts_E Regulatory protein GAL4; eukaryotic transcription complex, NAD, rossmann fold, acetylation, carbohydrate metabolism, DNA-binding; HET: NAD; 2.70A {Saccharomyces cerevisiae}
Probab=6.78 E-value=1.2e+02 Score=21.70 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=16.8
Q ss_pred ccccchhhhhccCCccccccccCCCCCCC
Q 002845 834 SRTSYIDDLEAGSGDVNLHFDDIYNGKPP 862 (874)
Q Consensus 834 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (874)
-.|+-|||+ +|..|+|--- .||
T Consensus 3 FNTTTMDDv------yNylFdd~d~-~p~ 24 (26)
T 3bts_E 3 FNTTTMDDV------YNYLFDDEDT-XXX 24 (26)
T ss_pred cccccHHHH------HHHhcCcccc-ccc
Confidence 357889999 8899998665 444
No 7
>3arc_H Photosystem II reaction center protein H; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3kzi_H* 3bz1_H* 1s5l_H* 2axt_H* 3bz2_H* 3prq_H* 3prr_H* 3a0b_H* 3a0h_H*
Probab=6.31 E-value=4e+02 Score=22.88 Aligned_cols=21 Identities=24% Similarity=0.489 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002845 322 MVVGLAILLLSPFLVIFMVVY 342 (874)
Q Consensus 322 ~~~GilNllLsPFIviy~lly 342 (874)
-++|+++.+|+-|++|.+-+|
T Consensus 28 plMgv~m~Lf~vFl~iiLeIY 48 (65)
T 3arc_H 28 PLMAVFMGLFLVFLLIILEIY 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHh
Confidence 368999999988888766444
No 8
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=6.25 E-value=7.9e+02 Score=21.59 Aligned_cols=29 Identities=17% Similarity=0.332 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hcCCCc
Q 002845 329 LLLSPFLVIFMVVYLFLRHAEQF-YNHPST 357 (874)
Q Consensus 329 llLsPFIviy~lly~FFrYaee~-k~~Pss 357 (874)
.++-|||+.|.+.----+..|.. ++||..
T Consensus 47 ~v~pPfv~~Y~i~~Wa~~~~e~~~rKnp~d 76 (81)
T 1pp9_G 47 RVAPPFVAFYLVYTWGTQEFEKSKRKNPAA 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSCC--
T ss_pred eeehhHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 66779988888776666665555 578864
No 9
>1xou_A ESPA; coiled coil, helix bundle, heterodimer, structural protein/chaperone complex; 2.80A {Escherichia coli} SCOP: a.231.1.1
Probab=5.73 E-value=1.3e+02 Score=30.60 Aligned_cols=24 Identities=17% Similarity=0.570 Sum_probs=0.0
Q ss_pred hhHHHHhhhc--ceeeecCccccccc
Q 002845 533 VDDILQFIAD--YTVDVEGVGHVCSF 556 (874)
Q Consensus 533 a~~IVDFfRe--fTV~VdGvG~VCSF 556 (874)
-+++|+|.|+ +-|.|+|+.+++-+
T Consensus 104 P~dVI~Ymrd~~NgItVdG~s~Iddy 129 (192)
T 1xou_A 104 PDEVISYINDPRNDITISGIDNINAQ 129 (192)
T ss_dssp --------------------------
T ss_pred CHHHHHHHHccCCCeeecCchhHHHH
Confidence 4789999999 99999999998877
No 10
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=5.72 E-value=3.7e+02 Score=21.07 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=10.6
Q ss_pred HHHHhhhHHHHHHHHHh
Q 002845 411 ISFVSGGFAAVLIIIAF 427 (874)
Q Consensus 411 VsFvaGS~~AVLiiLsl 427 (874)
.++++|+++.|++..++
T Consensus 11 ~Sl~aG~vvvv~i~~al 27 (39)
T 3arc_X 11 IGLLSGAVVLGLTFAVL 27 (39)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 46778887666544444
Done!