Query 002846
Match_columns 874
No_of_seqs 602 out of 3379
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 11:58:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002846.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002846hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 6.3E-49 1.4E-53 486.8 30.1 512 48-612 373-920 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 7.3E-48 1.6E-52 477.4 33.7 399 146-610 435-850 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 4.8E-46 1E-50 463.4 26.6 420 146-637 150-615 (857)
4 PLN03081 pentatricopeptide (PP 100.0 7.8E-44 1.7E-48 434.0 36.2 416 147-636 86-556 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 1.6E-43 3.5E-48 440.7 30.5 418 146-636 251-719 (857)
6 PLN03081 pentatricopeptide (PP 100.0 3.7E-43 8E-48 428.1 23.5 386 141-602 151-558 (697)
7 PF11977 RNase_Zc3h12a: Zc3h12 99.8 5.6E-21 1.2E-25 189.4 4.2 128 606-739 4-141 (155)
8 PRK11788 tetratricopeptide rep 99.7 2.5E-14 5.3E-19 162.3 27.3 285 162-492 47-353 (389)
9 PRK11788 tetratricopeptide rep 99.5 1.3E-12 2.8E-17 148.2 25.9 262 200-502 44-326 (389)
10 TIGR02917 PEP_TPR_lipo putativ 99.5 7.4E-11 1.6E-15 146.1 37.0 303 159-510 406-722 (899)
11 TIGR02917 PEP_TPR_lipo putativ 99.4 8.3E-11 1.8E-15 145.7 34.1 276 192-510 602-890 (899)
12 PF13041 PPR_2: PPR repeat fam 99.3 8.7E-12 1.9E-16 99.4 6.8 49 189-237 1-49 (50)
13 KOG4422 Uncharacterized conser 99.3 9.2E-10 2E-14 120.1 24.1 220 192-485 117-341 (625)
14 PF13041 PPR_2: PPR repeat fam 99.2 1.4E-11 3.1E-16 98.2 6.1 49 420-468 1-49 (50)
15 KOG4422 Uncharacterized conser 99.1 1.4E-08 3.1E-13 111.0 22.4 234 192-486 208-462 (625)
16 KOG4318 Bicoid mRNA stability 99.0 3.2E-09 6.8E-14 124.6 12.9 244 171-472 11-286 (1088)
17 PRK15174 Vi polysaccharide exp 98.9 1.1E-06 2.4E-11 107.2 33.2 302 159-511 51-372 (656)
18 PRK15174 Vi polysaccharide exp 98.8 2E-06 4.4E-11 104.8 29.6 276 161-486 87-381 (656)
19 PF12854 PPR_1: PPR repeat 98.5 6.5E-08 1.4E-12 70.6 3.3 31 383-413 3-33 (34)
20 TIGR00990 3a0801s09 mitochondr 98.5 3.4E-05 7.3E-10 93.6 28.8 254 164-486 308-571 (615)
21 TIGR00990 3a0801s09 mitochondr 98.5 4.6E-05 1E-09 92.5 29.8 292 159-486 136-496 (615)
22 PF12854 PPR_1: PPR repeat 98.5 1E-07 2.3E-12 69.6 4.0 34 416-449 1-34 (34)
23 KOG4318 Bicoid mRNA stability 98.5 1.8E-06 3.9E-11 102.0 15.4 219 212-506 11-286 (1088)
24 PF13429 TPR_15: Tetratricopep 98.5 6.2E-07 1.3E-11 97.6 10.9 254 161-485 19-276 (280)
25 PRK10747 putative protoheme IX 98.4 7.9E-05 1.7E-09 85.6 27.0 121 163-316 97-219 (398)
26 PRK10049 pgaA outer membrane p 98.4 0.00014 3E-09 90.6 30.8 282 159-486 58-388 (765)
27 PRK11447 cellulose synthase su 98.4 0.00014 3.1E-09 94.5 31.4 296 159-486 360-700 (1157)
28 PRK11447 cellulose synthase su 98.4 0.00012 2.6E-09 95.1 29.5 247 199-485 469-739 (1157)
29 TIGR02521 type_IV_pilW type IV 98.3 0.0001 2.2E-09 75.6 22.9 200 191-485 31-231 (234)
30 TIGR02521 type_IV_pilW type IV 98.3 9.7E-05 2.1E-09 75.8 21.8 178 294-509 41-221 (234)
31 TIGR00540 hemY_coli hemY prote 98.3 0.00021 4.6E-09 82.4 26.0 123 160-316 94-219 (409)
32 PF13429 TPR_15: Tetratricopep 98.2 5.5E-06 1.2E-10 90.2 10.9 228 197-486 14-243 (280)
33 COG2956 Predicted N-acetylgluc 98.2 0.00044 9.5E-09 74.5 23.2 293 143-486 35-347 (389)
34 PRK10049 pgaA outer membrane p 98.2 0.0013 2.8E-08 82.0 31.0 296 159-492 92-460 (765)
35 PRK14574 hmsH outer membrane p 98.1 0.0015 3.3E-08 81.1 29.5 281 160-486 112-445 (822)
36 KOG1126 DNA-binding cell divis 98.1 0.00079 1.7E-08 78.6 24.3 275 165-493 334-625 (638)
37 TIGR00756 PPR pentatricopeptid 98.0 7.3E-06 1.6E-10 59.1 3.9 35 192-226 1-35 (35)
38 PRK09782 bacteriophage N4 rece 98.0 0.002 4.3E-08 81.6 27.3 229 190-486 476-706 (987)
39 KOG4626 O-linked N-acetylgluco 97.9 0.00052 1.1E-08 79.0 18.9 276 159-485 125-416 (966)
40 TIGR00756 PPR pentatricopeptid 97.9 1.9E-05 4.1E-10 56.9 4.7 33 424-456 2-34 (35)
41 PRK14574 hmsH outer membrane p 97.9 0.046 1E-06 68.2 36.9 301 160-511 44-387 (822)
42 PF13812 PPR_3: Pentatricopept 97.8 2.1E-05 4.5E-10 56.8 4.2 33 192-224 2-34 (34)
43 COG2956 Predicted N-acetylgluc 97.8 0.0092 2E-07 64.6 25.2 229 204-493 48-285 (389)
44 PRK09782 bacteriophage N4 rece 97.8 0.0043 9.3E-08 78.7 26.6 220 164-457 490-710 (987)
45 PRK10747 putative protoheme IX 97.8 0.0025 5.5E-08 73.2 21.6 58 159-223 162-219 (398)
46 KOG1840 Kinesin light chain [C 97.8 0.0022 4.7E-08 75.1 20.9 244 192-484 200-477 (508)
47 PF13812 PPR_3: Pentatricopept 97.7 4.5E-05 9.7E-10 55.0 4.3 32 389-420 3-34 (34)
48 PRK12370 invasion protein regu 97.7 0.0072 1.6E-07 72.6 25.5 246 166-486 277-535 (553)
49 PRK12370 invasion protein regu 97.6 0.0062 1.3E-07 73.1 22.8 240 189-485 254-501 (553)
50 PF01535 PPR: PPR repeat; Int 97.5 7E-05 1.5E-09 52.6 3.1 31 192-222 1-31 (31)
51 KOG2003 TPR repeat-containing 97.5 0.0064 1.4E-07 67.8 19.2 192 296-504 502-706 (840)
52 TIGR00540 hemY_coli hemY prote 97.5 0.0099 2.2E-07 68.6 22.1 272 151-484 119-397 (409)
53 PF01535 PPR: PPR repeat; Int 97.5 0.00012 2.6E-09 51.5 3.7 29 424-452 2-30 (31)
54 KOG4626 O-linked N-acetylgluco 97.4 0.021 4.5E-07 66.3 22.0 249 192-486 117-383 (966)
55 PF08579 RPM2: Mitochondrial r 97.3 0.0014 3.1E-08 60.7 9.1 79 391-469 29-116 (120)
56 COG3071 HemY Uncharacterized e 97.3 0.14 3E-06 57.2 25.9 281 163-485 97-389 (400)
57 KOG1840 Kinesin light chain [C 97.2 0.017 3.7E-07 67.7 18.7 239 159-449 208-477 (508)
58 PF12569 NARP1: NMDA receptor- 97.1 0.26 5.6E-06 58.4 28.2 277 157-503 11-308 (517)
59 PF10037 MRP-S27: Mitochondria 97.1 0.0021 4.5E-08 73.7 10.4 115 356-470 70-186 (429)
60 PF06239 ECSIT: Evolutionarily 97.1 0.0029 6.4E-08 65.3 10.0 101 384-484 44-166 (228)
61 PF08579 RPM2: Mitochondrial r 97.1 0.0039 8.4E-08 57.9 9.5 80 356-435 29-117 (120)
62 PF10037 MRP-S27: Mitochondria 96.9 0.011 2.3E-07 68.0 13.5 131 374-504 50-186 (429)
63 KOG2076 RNA polymerase III tra 96.8 0.29 6.2E-06 59.7 24.6 293 160-485 217-554 (895)
64 COG3071 HemY Uncharacterized e 96.8 0.44 9.5E-06 53.4 23.9 248 195-503 86-372 (400)
65 KOG1129 TPR repeat-containing 96.7 0.23 4.9E-06 54.2 20.9 260 164-486 193-458 (478)
66 PF12569 NARP1: NMDA receptor- 96.7 0.26 5.7E-06 58.4 23.0 270 159-485 47-333 (517)
67 KOG1155 Anaphase-promoting com 96.5 0.8 1.7E-05 52.3 23.9 219 202-485 273-494 (559)
68 PRK11189 lipoprotein NlpI; Pro 96.5 0.56 1.2E-05 51.7 23.1 218 204-486 39-265 (296)
69 PF09295 ChAPs: ChAPs (Chs5p-A 96.4 0.049 1.1E-06 62.3 14.4 121 358-486 175-297 (395)
70 cd05804 StaR_like StaR_like; a 96.4 1.2 2.5E-05 49.9 25.5 229 200-486 52-293 (355)
71 PF04733 Coatomer_E: Coatomer 96.4 0.045 9.8E-07 60.2 13.6 126 356-486 135-265 (290)
72 KOG2003 TPR repeat-containing 96.4 0.19 4.2E-06 56.5 18.1 124 356-484 596-720 (840)
73 cd05804 StaR_like StaR_like; a 96.4 0.68 1.5E-05 51.7 23.2 229 193-479 8-247 (355)
74 PF06239 ECSIT: Evolutionarily 96.3 0.017 3.8E-07 59.8 9.0 95 356-450 51-167 (228)
75 PF04733 Coatomer_E: Coatomer 96.3 0.026 5.7E-07 62.0 11.1 201 188-451 63-265 (290)
76 KOG2076 RNA polymerase III tra 96.0 1.2 2.5E-05 54.6 23.4 252 199-486 148-443 (895)
77 KOG1126 DNA-binding cell divis 96.0 0.63 1.4E-05 55.1 20.5 239 162-451 365-620 (638)
78 COG3063 PilF Tfp pilus assembl 95.9 1.5 3.2E-05 46.1 20.7 206 194-462 38-245 (250)
79 KOG2002 TPR-containing nuclear 95.9 0.74 1.6E-05 56.7 21.1 299 159-504 422-763 (1018)
80 TIGR03302 OM_YfiO outer membra 95.9 0.36 7.8E-06 50.8 17.0 160 294-486 43-232 (235)
81 PRK11189 lipoprotein NlpI; Pro 95.9 1.1 2.4E-05 49.3 21.5 228 165-463 41-276 (296)
82 KOG0495 HAT repeat protein [RN 95.7 6.7 0.00014 46.9 26.8 200 192-432 585-797 (913)
83 TIGR02552 LcrH_SycD type III s 95.5 0.33 7.1E-06 46.1 13.8 99 386-486 16-114 (135)
84 KOG1128 Uncharacterized conser 95.5 0.38 8.2E-06 57.5 16.3 84 364-450 531-615 (777)
85 TIGR03302 OM_YfiO outer membra 95.5 1.2 2.6E-05 46.7 19.1 60 392-451 171-232 (235)
86 cd00189 TPR Tetratricopeptide 95.4 0.16 3.5E-06 42.8 10.3 90 393-484 6-95 (100)
87 KOG2002 TPR-containing nuclear 95.4 2.4 5.3E-05 52.4 23.0 288 162-487 464-799 (1018)
88 COG3063 PilF Tfp pilus assembl 95.4 0.98 2.1E-05 47.4 17.0 144 360-506 43-188 (250)
89 KOG3785 Uncharacterized conser 95.2 0.12 2.6E-06 56.7 10.3 134 356-496 363-498 (557)
90 PF05843 Suf: Suppressor of fo 95.2 0.16 3.4E-06 55.7 11.4 127 356-486 5-136 (280)
91 TIGR02552 LcrH_SycD type III s 95.1 0.38 8.3E-06 45.7 12.7 105 356-464 21-125 (135)
92 KOG1070 rRNA processing protei 95.1 1.8 4E-05 55.2 20.9 224 191-477 1458-1691(1710)
93 COG4783 Putative Zn-dependent 95.1 3.7 8E-05 47.4 21.9 138 324-492 319-460 (484)
94 PRK15359 type III secretion sy 94.9 0.44 9.5E-06 46.6 12.7 92 393-486 30-121 (144)
95 PRK15359 type III secretion sy 94.9 0.56 1.2E-05 45.9 13.5 100 360-463 32-131 (144)
96 cd00189 TPR Tetratricopeptide 94.9 0.26 5.7E-06 41.5 10.0 92 357-450 5-96 (100)
97 PRK10370 formate-dependent nit 94.9 0.94 2E-05 46.9 15.8 127 365-498 52-184 (198)
98 KOG3785 Uncharacterized conser 94.9 5.9 0.00013 44.0 21.7 148 324-485 298-456 (557)
99 TIGR02795 tol_pal_ybgF tol-pal 94.7 0.47 1E-05 43.5 11.9 96 389-486 4-105 (119)
100 KOG4340 Uncharacterized conser 94.7 1.5 3.4E-05 47.4 16.7 173 248-448 156-336 (459)
101 KOG1070 rRNA processing protei 94.7 4.3 9.3E-05 52.1 22.8 202 248-503 1470-1679(1710)
102 KOG3941 Intermediate in Toll s 94.6 0.22 4.7E-06 53.3 10.1 102 384-485 64-187 (406)
103 PF09976 TPR_21: Tetratricopep 94.6 0.52 1.1E-05 46.0 12.4 124 356-482 16-143 (145)
104 PF12921 ATP13: Mitochondrial 94.6 0.24 5.2E-06 47.5 9.6 99 386-504 1-100 (126)
105 KOG1915 Cell cycle control pro 94.3 13 0.00028 43.0 25.2 279 161-486 152-466 (677)
106 KOG1156 N-terminal acetyltrans 94.3 3.3 7.1E-05 49.3 19.4 284 156-486 191-511 (700)
107 KOG3616 Selective LIM binding 94.2 0.35 7.5E-06 57.3 11.4 75 362-447 742-816 (1636)
108 KOG0547 Translocase of outer m 94.2 2 4.4E-05 49.4 17.0 215 163-447 339-562 (606)
109 KOG1155 Anaphase-promoting com 94.2 11 0.00025 43.3 22.7 127 356-486 334-461 (559)
110 KOG2047 mRNA splicing factor [ 94.1 5.3 0.00011 47.6 20.6 296 162-485 359-686 (835)
111 PRK04841 transcriptional regul 93.9 12 0.00026 47.6 25.9 275 162-486 421-720 (903)
112 PF12921 ATP13: Mitochondrial 93.8 0.42 9.1E-06 45.9 9.5 56 417-472 47-103 (126)
113 PF14938 SNAP: Soluble NSF att 93.8 3.5 7.6E-05 45.0 18.0 117 366-484 129-264 (282)
114 PF09295 ChAPs: ChAPs (Chs5p-A 93.7 0.69 1.5E-05 53.0 12.6 111 324-450 182-296 (395)
115 KOG3081 Vesicle coat complex C 93.6 1.5 3.2E-05 47.0 13.7 121 361-486 146-271 (299)
116 PRK04841 transcriptional regul 93.6 6.3 0.00014 50.2 22.6 272 161-486 463-760 (903)
117 KOG0547 Translocase of outer m 93.6 2.6 5.6E-05 48.6 16.4 122 360-486 436-566 (606)
118 KOG3081 Vesicle coat complex C 93.5 1 2.2E-05 48.2 12.4 137 360-507 116-257 (299)
119 KOG3616 Selective LIM binding 93.5 1.5 3.2E-05 52.3 14.6 160 196-410 737-905 (1636)
120 TIGR02795 tol_pal_ybgF tol-pal 93.4 1.7 3.7E-05 39.7 12.8 94 357-452 7-106 (119)
121 KOG0495 HAT repeat protein [RN 93.4 23 0.0005 42.6 31.4 187 360-558 592-816 (913)
122 PRK15179 Vi polysaccharide bio 93.3 1.9 4.1E-05 53.2 16.4 125 356-486 90-217 (694)
123 COG5010 TadD Flp pilus assembl 93.3 2.2 4.8E-05 45.5 14.5 124 356-482 104-227 (257)
124 KOG3617 WD40 and TPR repeat-co 93.1 1.9 4.1E-05 52.3 15.0 216 160-447 738-992 (1416)
125 PLN03088 SGT1, suppressor of 93.0 1.2 2.6E-05 50.5 13.3 88 396-486 11-99 (356)
126 KOG3777 Uncharacterized conser 92.9 0.052 1.1E-06 61.9 2.0 103 604-713 12-124 (443)
127 PRK14720 transcript cleavage f 92.8 15 0.00031 46.6 22.9 127 356-486 120-252 (906)
128 COG4783 Putative Zn-dependent 92.7 23 0.00051 41.1 22.4 218 165-467 252-472 (484)
129 KOG1129 TPR repeat-containing 92.6 0.91 2E-05 49.7 10.5 181 294-486 233-424 (478)
130 KOG2376 Signal recognition par 92.5 29 0.00062 41.3 24.4 136 367-505 356-506 (652)
131 KOG0985 Vesicle coat protein c 92.3 8 0.00017 48.3 18.8 252 170-484 967-1221(1666)
132 PF14559 TPR_19: Tetratricopep 92.1 0.35 7.5E-06 40.2 5.6 19 430-448 33-51 (68)
133 PF09976 TPR_21: Tetratricopep 92.0 1.5 3.2E-05 42.7 10.8 86 360-447 56-143 (145)
134 PRK10370 formate-dependent nit 92.0 2.5 5.5E-05 43.7 13.0 107 356-466 77-186 (198)
135 PF04840 Vps16_C: Vps16, C-ter 91.8 11 0.00024 42.2 18.5 107 356-482 181-287 (319)
136 KOG0985 Vesicle coat protein c 91.5 11 0.00024 47.1 18.9 196 205-482 1089-1304(1666)
137 KOG1538 Uncharacterized conser 91.5 7.6 0.00016 46.2 16.9 117 359-486 710-846 (1081)
138 KOG3941 Intermediate in Toll s 91.4 0.77 1.7E-05 49.3 8.3 86 365-450 85-187 (406)
139 KOG4340 Uncharacterized conser 91.3 12 0.00027 40.8 17.1 297 159-504 19-358 (459)
140 KOG1156 N-terminal acetyltrans 91.2 37 0.00079 40.9 22.2 58 427-486 376-434 (700)
141 PRK02603 photosystem I assembl 91.2 4.9 0.00011 40.3 13.8 111 387-503 35-162 (172)
142 KOG1914 mRNA cleavage and poly 91.1 4.4 9.6E-05 47.3 14.5 127 356-486 370-501 (656)
143 PF12895 Apc3: Anaphase-promot 91.1 0.2 4.3E-06 43.9 3.2 80 365-447 2-83 (84)
144 KOG2376 Signal recognition par 91.1 13 0.00028 44.0 18.3 116 359-486 19-139 (652)
145 PRK02603 photosystem I assembl 91.0 3.7 8.1E-05 41.1 12.7 111 356-472 39-166 (172)
146 PF14559 TPR_19: Tetratricopep 90.9 0.51 1.1E-05 39.2 5.4 64 363-429 2-65 (68)
147 PF05843 Suf: Suppressor of fo 90.8 1 2.2E-05 49.3 9.0 144 279-467 2-150 (280)
148 smart00299 CLH Clathrin heavy 90.8 12 0.00025 36.0 15.6 122 356-500 11-133 (140)
149 KOG1173 Anaphase-promoting com 90.6 43 0.00093 39.7 23.4 123 361-486 389-518 (611)
150 KOG1914 mRNA cleavage and poly 90.6 6.8 0.00015 45.9 15.3 133 275-450 363-500 (656)
151 PLN03088 SGT1, suppressor of 90.4 3.5 7.6E-05 46.7 13.2 100 360-464 10-110 (356)
152 PF03704 BTAD: Bacterial trans 90.3 1.1 2.4E-05 43.4 8.0 70 389-459 64-138 (146)
153 PRK10153 DNA-binding transcrip 90.1 8.5 0.00018 45.9 16.6 139 356-500 341-494 (517)
154 PF12895 Apc3: Anaphase-promot 89.9 0.4 8.6E-06 42.0 4.0 80 400-482 2-83 (84)
155 KOG1915 Cell cycle control pro 89.9 5.4 0.00012 45.9 13.6 181 297-497 86-282 (677)
156 PLN02789 farnesyltranstransfer 89.8 38 0.00083 37.9 23.5 209 199-470 45-268 (320)
157 COG5107 RNA14 Pre-mRNA 3'-end 89.2 4.7 0.0001 46.1 12.5 136 356-497 401-540 (660)
158 PRK15179 Vi polysaccharide bio 89.0 14 0.00031 45.7 17.8 109 383-497 82-193 (694)
159 PF03704 BTAD: Bacterial trans 89.0 1.1 2.4E-05 43.5 6.8 68 356-424 66-138 (146)
160 CHL00033 ycf3 photosystem I as 88.3 5.8 0.00013 39.5 11.7 55 361-415 44-100 (168)
161 PRK10803 tol-pal system protei 88.3 9.3 0.0002 41.5 14.0 103 387-493 143-251 (263)
162 PF12688 TPR_5: Tetratrico pep 88.1 11 0.00023 35.9 12.6 101 362-468 11-117 (120)
163 COG5107 RNA14 Pre-mRNA 3'-end 87.5 7.6 0.00016 44.5 12.7 146 278-468 397-546 (660)
164 PF14938 SNAP: Soluble NSF att 87.4 3.2 6.9E-05 45.4 9.9 119 365-486 87-225 (282)
165 PF13170 DUF4003: Protein of u 87.2 35 0.00076 37.8 17.8 68 369-437 160-231 (297)
166 KOG2053 Mitochondrial inherita 87.2 77 0.0017 39.6 21.6 220 202-486 20-255 (932)
167 KOG1174 Anaphase-promoting com 86.5 67 0.0015 36.9 21.7 263 201-504 206-483 (564)
168 PF13170 DUF4003: Protein of u 86.0 12 0.00027 41.3 13.5 128 368-497 78-222 (297)
169 CHL00033 ycf3 photosystem I as 85.7 11 0.00025 37.4 12.1 96 386-482 34-138 (168)
170 PF13432 TPR_16: Tetratricopep 84.7 2.9 6.3E-05 34.3 6.1 54 431-486 6-60 (65)
171 KOG3617 WD40 and TPR repeat-co 84.7 22 0.00047 43.7 15.1 236 190-484 725-994 (1416)
172 PF13432 TPR_16: Tetratricopep 84.3 3.7 8E-05 33.7 6.6 54 361-415 6-59 (65)
173 PRK10866 outer membrane biogen 84.2 44 0.00095 35.8 16.4 158 294-484 42-239 (243)
174 KOG2047 mRNA splicing factor [ 83.9 1.1E+02 0.0024 37.1 23.8 267 192-493 249-583 (835)
175 KOG2053 Mitochondrial inherita 82.1 20 0.00044 44.4 13.8 120 361-486 18-139 (932)
176 KOG2796 Uncharacterized conser 80.9 13 0.00029 39.9 10.4 135 356-496 181-323 (366)
177 PRK15363 pathogenicity island 80.7 19 0.00042 35.9 11.0 83 363-447 46-128 (157)
178 PF12688 TPR_5: Tetratrico pep 80.6 20 0.00043 34.1 10.8 90 394-485 8-103 (120)
179 PF13371 TPR_9: Tetratricopept 80.4 9.6 0.00021 31.8 7.9 17 398-414 6-22 (73)
180 COG5010 TadD Flp pilus assembl 79.8 66 0.0014 34.6 15.2 119 364-486 78-197 (257)
181 PRK14720 transcript cleavage f 79.2 47 0.001 42.2 16.1 148 277-451 30-178 (906)
182 PF13371 TPR_9: Tetratricopept 78.9 10 0.00023 31.6 7.6 63 430-496 3-66 (73)
183 PLN02789 farnesyltranstransfer 78.2 1.2E+02 0.0026 33.9 20.5 210 159-434 46-267 (320)
184 KOG1538 Uncharacterized conser 77.6 23 0.00049 42.4 11.8 85 393-486 709-802 (1081)
185 KOG3060 Uncharacterized conser 77.4 43 0.00093 36.0 12.8 122 359-486 59-183 (289)
186 PRK10803 tol-pal system protei 77.2 20 0.00044 38.9 11.0 92 356-451 147-246 (263)
187 PLN03098 LPA1 LOW PSII ACCUMUL 76.5 30 0.00065 40.2 12.4 63 386-450 74-140 (453)
188 PF13762 MNE1: Mitochondrial s 76.2 50 0.0011 32.5 12.2 103 374-476 24-134 (145)
189 PF13424 TPR_12: Tetratricopep 75.8 4.8 0.0001 34.3 4.7 60 388-447 6-71 (78)
190 KOG1173 Anaphase-promoting com 74.8 1.9E+02 0.0042 34.5 21.0 261 159-467 253-532 (611)
191 PF13929 mRNA_stabil: mRNA sta 73.2 50 0.0011 36.2 12.4 138 367-504 143-290 (292)
192 PRK10153 DNA-binding transcrip 72.0 59 0.0013 38.9 14.1 71 386-460 419-489 (517)
193 PF05991 NYN_YacP: YacP-like N 71.7 8.7 0.00019 38.7 6.0 110 607-726 1-130 (166)
194 PF13414 TPR_11: TPR repeat; P 71.5 12 0.00026 30.8 6.1 60 388-448 4-64 (69)
195 PF09613 HrpB1_HrpK: Bacterial 71.4 84 0.0018 31.5 12.6 100 398-504 21-122 (160)
196 PF04840 Vps16_C: Vps16, C-ter 71.4 31 0.00067 38.6 10.8 97 324-447 190-287 (319)
197 PRK15363 pathogenicity island 70.2 61 0.0013 32.4 11.4 92 392-486 40-132 (157)
198 KOG4570 Uncharacterized conser 69.9 14 0.00031 40.5 7.4 104 381-486 58-164 (418)
199 PF04053 Coatomer_WDAD: Coatom 69.8 56 0.0012 38.3 12.9 81 386-481 346-426 (443)
200 KOG1920 IkappaB kinase complex 69.0 3.6E+02 0.0078 35.2 20.9 155 297-486 864-1028(1265)
201 PF13929 mRNA_stabil: mRNA sta 68.2 1E+02 0.0022 33.9 13.4 101 367-467 181-288 (292)
202 KOG1128 Uncharacterized conser 67.5 48 0.001 40.5 11.6 197 248-486 410-616 (777)
203 COG4700 Uncharacterized protei 66.6 1.7E+02 0.0036 30.4 14.1 120 356-479 93-215 (251)
204 KOG1125 TPR repeat-containing 66.5 2.4E+02 0.0052 33.8 16.8 113 367-484 409-525 (579)
205 COG3629 DnrI DNA-binding trans 66.2 41 0.0009 36.8 10.1 58 427-485 158-215 (280)
206 PF09205 DUF1955: Domain of un 65.6 65 0.0014 31.4 10.0 61 356-417 90-150 (161)
207 KOG2297 Predicted translation 65.1 2.3E+02 0.005 31.5 17.0 31 106-136 55-85 (412)
208 smart00299 CLH Clathrin heavy 64.9 41 0.00089 32.2 9.1 88 390-485 10-97 (140)
209 PF13424 TPR_12: Tetratricopep 64.3 12 0.00026 31.8 4.7 63 423-485 6-74 (78)
210 PF10300 DUF3808: Protein of u 64.1 1.5E+02 0.0033 35.0 15.2 117 365-485 246-375 (468)
211 KOG1174 Anaphase-promoting com 63.8 2.8E+02 0.0061 32.1 19.7 274 161-486 207-500 (564)
212 PLN03098 LPA1 LOW PSII ACCUMUL 63.4 59 0.0013 37.9 11.1 59 356-416 79-141 (453)
213 PF13414 TPR_11: TPR repeat; P 62.5 19 0.00041 29.7 5.4 59 356-415 7-66 (69)
214 PF13525 YfiO: Outer membrane 62.3 1.9E+02 0.0042 29.7 14.4 73 160-237 15-88 (203)
215 KOG4162 Predicted calmodulin-b 62.2 3.2E+02 0.007 33.9 17.1 81 403-485 460-541 (799)
216 COG0735 Fur Fe2+/Zn2+ uptake r 62.1 61 0.0013 31.8 9.7 63 442-505 6-69 (145)
217 PF07035 Mic1: Colon cancer-as 61.9 1.3E+02 0.0028 30.4 12.1 102 372-483 14-115 (167)
218 PF13512 TPR_18: Tetratricopep 61.1 89 0.0019 30.7 10.4 75 363-437 21-97 (142)
219 PF04053 Coatomer_WDAD: Coatom 60.5 42 0.00092 39.3 9.6 95 324-445 331-425 (443)
220 PF07035 Mic1: Colon cancer-as 59.4 2E+02 0.0044 29.0 13.4 114 356-485 33-148 (167)
221 PF14626 RNase_Zc3h12a_2: Zc3h 59.1 35 0.00077 32.2 6.8 72 640-711 22-98 (122)
222 COG3629 DnrI DNA-binding trans 59.0 67 0.0015 35.2 10.1 78 387-465 153-235 (280)
223 PRK10866 outer membrane biogen 58.7 2.5E+02 0.0055 29.9 18.1 57 192-260 34-93 (243)
224 PF10602 RPN7: 26S proteasome 58.3 1E+02 0.0022 31.3 10.9 97 388-486 37-142 (177)
225 PF00637 Clathrin: Region in C 57.8 4.7 0.0001 38.9 1.0 87 356-449 11-97 (143)
226 KOG1125 TPR repeat-containing 55.9 4.3E+02 0.0094 31.7 20.7 250 159-477 294-562 (579)
227 KOG0553 TPR repeat-containing 54.7 1.1E+02 0.0023 33.8 10.6 92 364-460 93-185 (304)
228 PF00637 Clathrin: Region in C 53.7 3.1 6.7E-05 40.1 -1.0 88 392-486 12-99 (143)
229 KOG4162 Predicted calmodulin-b 53.2 5.4E+02 0.012 32.0 20.1 270 203-528 239-544 (799)
230 KOG4570 Uncharacterized conser 53.1 62 0.0013 35.9 8.5 56 361-416 109-164 (418)
231 PF09613 HrpB1_HrpK: Bacterial 52.6 2.6E+02 0.0056 28.1 12.9 85 361-452 19-107 (160)
232 PHA02875 ankyrin repeat protei 52.3 2E+02 0.0042 32.9 13.4 110 356-478 103-220 (413)
233 KOG0276 Vesicle coat complex C 52.3 39 0.00085 40.3 7.3 103 360-483 645-747 (794)
234 COG3118 Thioredoxin domain-con 52.0 2.7E+02 0.0059 30.8 13.1 140 361-504 143-284 (304)
235 COG1729 Uncharacterized protei 52.0 1.4E+02 0.003 32.4 11.0 102 388-494 143-250 (262)
236 PF13176 TPR_7: Tetratricopept 52.0 29 0.00062 25.2 4.2 25 389-413 1-25 (36)
237 PF10300 DUF3808: Protein of u 51.4 3.9E+02 0.0085 31.5 15.8 152 248-449 200-374 (468)
238 PF09205 DUF1955: Domain of un 51.2 2.5E+02 0.0054 27.6 12.3 118 365-486 15-149 (161)
239 PF13281 DUF4071: Domain of un 50.8 4.4E+02 0.0095 30.3 18.4 32 187-220 139-170 (374)
240 PF13512 TPR_18: Tetratricopep 50.7 1.3E+02 0.0029 29.5 9.7 76 396-472 19-97 (142)
241 COG3898 Uncharacterized membra 49.7 4.6E+02 0.01 30.2 19.3 123 163-320 97-225 (531)
242 PRK15331 chaperone protein Sic 48.9 1.7E+02 0.0036 29.6 10.3 87 362-450 47-133 (165)
243 KOG2297 Predicted translation 46.6 4.6E+02 0.0099 29.3 14.4 72 361-442 264-341 (412)
244 KOG1127 TPR repeat-containing 45.5 5.2E+02 0.011 33.3 15.4 191 197-449 465-657 (1238)
245 PHA02875 ankyrin repeat protei 45.4 5.1E+02 0.011 29.5 19.6 207 171-458 16-231 (413)
246 PF13176 TPR_7: Tetratricopept 44.6 43 0.00093 24.2 4.1 26 193-218 1-26 (36)
247 KOG0553 TPR repeat-containing 44.1 2E+02 0.0044 31.7 10.7 110 370-497 76-187 (304)
248 PF13374 TPR_10: Tetratricopep 43.1 52 0.0011 23.8 4.5 28 388-415 3-30 (42)
249 PF10602 RPN7: 26S proteasome 43.0 1.2E+02 0.0026 30.8 8.5 94 356-449 40-140 (177)
250 KOG2041 WD40 repeat protein [G 42.8 95 0.0021 37.8 8.5 22 7-28 405-426 (1189)
251 TIGR02561 HrpB1_HrpK type III 42.3 3.6E+02 0.0078 26.9 13.5 50 399-452 22-74 (153)
252 PF02284 COX5A: Cytochrome c o 42.2 1E+02 0.0022 28.7 6.8 60 370-430 28-87 (108)
253 PF13428 TPR_14: Tetratricopep 41.7 49 0.0011 25.0 4.2 28 389-416 3-30 (44)
254 PF08631 SPO22: Meiosis protei 40.3 5.1E+02 0.011 28.1 15.2 122 363-486 4-150 (278)
255 PF10366 Vps39_1: Vacuolar sor 40.1 1.4E+02 0.003 27.8 7.8 27 459-485 41-67 (108)
256 KOG2280 Vacuolar assembly/sort 40.0 1E+02 0.0022 38.0 8.3 108 368-485 664-772 (829)
257 TIGR02561 HrpB1_HrpK type III 39.8 3.9E+02 0.0085 26.6 11.1 77 364-445 22-99 (153)
258 PF13525 YfiO: Outer membrane 39.4 4.4E+02 0.0095 27.0 12.7 56 361-416 14-71 (203)
259 PF11848 DUF3368: Domain of un 39.1 86 0.0019 24.7 5.3 38 198-235 9-46 (48)
260 KOG1920 IkappaB kinase complex 38.8 4.6E+02 0.01 34.3 13.9 76 360-446 973-1050(1265)
261 PRK10564 maltose regulon perip 38.6 72 0.0016 35.2 6.4 49 184-232 249-298 (303)
262 KOG3060 Uncharacterized conser 37.8 5.7E+02 0.012 27.9 19.7 46 370-416 138-183 (289)
263 KOG2796 Uncharacterized conser 37.7 2.1E+02 0.0046 31.2 9.4 105 358-468 218-330 (366)
264 cd00923 Cyt_c_Oxidase_Va Cytoc 36.3 1.4E+02 0.0031 27.4 6.8 59 370-429 25-83 (103)
265 PF13374 TPR_10: Tetratricopep 36.0 82 0.0018 22.6 4.6 27 192-218 3-29 (42)
266 PF13762 MNE1: Mitochondrial s 35.5 1.3E+02 0.0029 29.6 7.1 85 151-238 42-127 (145)
267 PF11207 DUF2989: Protein of u 34.5 2E+02 0.0043 30.0 8.5 73 369-442 123-198 (203)
268 COG4235 Cytochrome c biogenesi 34.0 4.9E+02 0.011 28.7 11.8 101 384-486 153-256 (287)
269 COG2178 Predicted RNA-binding 33.4 2.3E+02 0.0051 29.4 8.6 107 369-485 20-149 (204)
270 PHA03100 ankyrin repeat protei 32.4 5.5E+02 0.012 29.8 13.2 29 195-227 36-64 (480)
271 cd00923 Cyt_c_Oxidase_Va Cytoc 32.3 1.9E+02 0.0042 26.6 7.0 45 441-485 26-70 (103)
272 PF11838 ERAP1_C: ERAP1-like C 32.1 3.8E+02 0.0083 29.2 11.2 94 356-452 133-231 (324)
273 COG4455 ImpE Protein of avirul 32.0 2.6E+02 0.0056 29.8 8.7 53 393-446 7-59 (273)
274 PF12796 Ank_2: Ankyrin repeat 31.7 1.5E+02 0.0032 25.6 6.3 27 393-423 29-55 (89)
275 PF11663 Toxin_YhaV: Toxin wit 31.2 55 0.0012 31.8 3.5 34 160-201 105-138 (140)
276 COG1729 Uncharacterized protei 31.1 4.6E+02 0.0099 28.5 10.9 95 356-451 146-244 (262)
277 PF04184 ST7: ST7 protein; In 30.6 5.6E+02 0.012 30.5 12.0 68 362-430 269-339 (539)
278 PF10083 DUF2321: Uncharacteri 30.6 94 0.002 30.8 5.1 55 549-603 65-135 (158)
279 COG4235 Cytochrome c biogenesi 30.4 5.7E+02 0.012 28.2 11.6 106 356-466 160-269 (287)
280 PF13428 TPR_14: Tetratricopep 30.3 91 0.002 23.5 4.1 28 459-486 3-30 (44)
281 TIGR02508 type_III_yscG type I 30.2 2.7E+02 0.0058 26.0 7.5 49 432-486 49-97 (115)
282 PF01475 FUR: Ferric uptake re 29.8 1.4E+02 0.0031 27.8 6.3 46 461-506 11-57 (120)
283 KOG0543 FKBP-type peptidyl-pro 29.5 4.8E+02 0.01 30.0 11.1 124 360-486 216-355 (397)
284 PF07079 DUF1347: Protein of u 28.7 1E+03 0.022 28.1 15.1 177 296-510 18-213 (549)
285 PF02284 COX5A: Cytochrome c o 28.5 2.5E+02 0.0054 26.2 7.1 47 440-486 28-74 (108)
286 PF11663 Toxin_YhaV: Toxin wit 28.4 51 0.0011 32.0 2.9 34 202-237 106-139 (140)
287 PF11848 DUF3368: Domain of un 28.0 1.6E+02 0.0035 23.1 5.2 29 469-497 14-42 (48)
288 PF06844 DUF1244: Protein of u 26.9 20 0.00043 30.2 -0.2 37 689-729 20-56 (68)
289 COG2351 Transthyretin-like pro 26.8 74 0.0016 30.1 3.5 29 734-762 80-112 (124)
290 COG2178 Predicted RNA-binding 26.7 5.5E+02 0.012 26.8 9.9 94 356-450 33-149 (204)
291 KOG0543 FKBP-type peptidyl-pro 26.2 3.7E+02 0.008 30.9 9.5 106 396-504 217-337 (397)
292 COG4455 ImpE Protein of avirul 26.1 2.2E+02 0.0049 30.2 7.1 75 356-431 5-81 (273)
293 PF04184 ST7: ST7 protein; In 25.9 5E+02 0.011 30.9 10.6 73 392-464 264-338 (539)
294 PF08631 SPO22: Meiosis protei 24.8 9E+02 0.02 26.1 19.5 102 388-493 85-193 (278)
295 PF10475 DUF2450: Protein of u 24.4 5.9E+02 0.013 27.9 10.8 114 356-480 102-220 (291)
296 PRK14956 DNA polymerase III su 24.2 1.3E+03 0.027 27.6 14.4 109 370-504 184-294 (484)
297 TIGR03504 FimV_Cterm FimV C-te 24.0 1.2E+02 0.0025 23.6 3.6 24 393-416 5-28 (44)
298 PRK15331 chaperone protein Sic 24.0 3.3E+02 0.0072 27.5 7.8 88 396-486 46-134 (165)
299 PF10366 Vps39_1: Vacuolar sor 23.5 3.9E+02 0.0084 24.8 7.7 26 390-415 42-67 (108)
300 PRK11906 transcriptional regul 23.3 5.4E+02 0.012 30.3 10.4 111 366-482 318-432 (458)
301 COG0457 NrfG FOG: TPR repeat [ 22.6 6.5E+02 0.014 23.7 14.9 128 356-486 63-196 (291)
302 PF09868 DUF2095: Uncharacteri 22.6 2.8E+02 0.006 26.3 6.3 27 356-382 65-91 (128)
303 PF07721 TPR_4: Tetratricopept 22.0 1.3E+02 0.0027 20.1 3.1 21 391-411 5-25 (26)
304 PF11846 DUF3366: Domain of un 21.9 2.8E+02 0.0061 28.2 7.2 34 453-486 140-173 (193)
305 KOG4555 TPR repeat-containing 21.7 7.8E+02 0.017 24.2 9.9 87 361-452 52-145 (175)
306 TIGR00305 probable toxin-antit 21.4 72 0.0016 29.5 2.5 23 682-704 85-108 (114)
307 KOG4555 TPR repeat-containing 20.6 8.2E+02 0.018 24.1 9.5 89 396-486 52-144 (175)
308 cd07229 Pat_TGL3_like Triacylg 20.4 2.8E+02 0.006 32.0 7.3 44 304-377 99-142 (391)
309 PF13470 PIN_3: PIN domain 20.3 81 0.0018 29.1 2.6 23 683-705 95-118 (119)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.3e-49 Score=486.81 Aligned_cols=512 Identities=11% Similarity=0.073 Sum_probs=389.6
Q ss_pred Ccchhhhhhcccccccccccccc-cccc-cceeeeeecccCccCCCCCCccccccccccccccccccccccchhhhhhhh
Q 002846 48 RTPLLVFKAHVRNTQAKLSTTET-EHET-STVTLRTRKGTASGASSLGTRDKRVDSAGEEKDGKRLTKDNNSRKNFAFLK 125 (874)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (874)
|..++.+.....+...++.+-|. +..+ ...+..++..........|...+....+..-.. -....|..-.-.+++
T Consensus 373 ~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~---pd~~Tyn~LL~a~~k 449 (1060)
T PLN03218 373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN---PTLSTFNMLMSVCAS 449 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC---CCHHHHHHHHHHHHh
Confidence 34444444444455556666665 2222 223333333333333344443333322221111 111223334445566
Q ss_pred ccCCCCCCCcccccccccccccchhhhhhhchHHHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcC
Q 002846 126 SREMSSGNSSLRSKDKKIGIKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRG 205 (874)
Q Consensus 126 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G 205 (874)
.|....+..-+..+.......+..++|..+. .+++.++.++|.++|++|... |+.||+++||+||.+|++.|
T Consensus 450 ~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~--~y~k~G~vd~A~~vf~eM~~~------Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 450 SQDIDGALRVLRLVQEAGLKADCKLYTTLIS--TCAKSGKVDAMFEVFHEMVNA------GVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHhCcCHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHHCc
Confidence 6766666666666666667778889999998 999999999999999999544 56777799999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhc-CCCC-chhhhHh
Q 002846 206 DVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS-RDMD-NNGQLDY 283 (874)
Q Consensus 206 ~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~-~gi~-d~vtyn~ 283 (874)
++++|+++|++|.+.|+.||..|||+||.+|+ +.|++++|.++|. +|... .|+. |.++||+
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~----------k~G~~deA~~lf~-------eM~~~~~gi~PD~vTyna 584 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACG----------QSGAVDRAFDVLA-------EMKAETHPIDPDHITVGA 584 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----------HCCCHHHHHHHHH-------HHHHhcCCCCCcHHHHHH
Confidence 99999999999999999999999999999999 8899999999994 77653 3565 8899999
Q ss_pred hhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeec--------cccHHHHHHhhhcC-----CCCcccccccccc
Q 002846 284 GSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL--------NSQLLDGRSNLERG-----PDDQSRKKDWSID 350 (874)
Q Consensus 284 LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~--------~g~~~eA~~l~~~m-----~pd~~ty~~w~i~ 350 (874)
||++ ||+.|++++|.++|++|.+.|+.|+.++|+ .|++++|..+|++| .||.++|
T Consensus 585 LI~a------y~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Ty------ 652 (1060)
T PLN03218 585 LMKA------CANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFF------ 652 (1060)
T ss_pred HHHH------HHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH------
Confidence 9999 999999999999999999999999999998 89999999999999 7999999
Q ss_pred cCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHH
Q 002846 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430 (874)
Q Consensus 351 ~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~ 430 (874)
++||++|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+||+||.
T Consensus 653 -----nsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~ 727 (1060)
T PLN03218 653 -----SALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALIT 727 (1060)
T ss_pred -----HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCChhHHHHHHHHHhcchHHHh
Q 002846 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARL 510 (874)
Q Consensus 431 a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~T~~~I~~~~~s~~~~~a 510 (874)
+||+.|++++|.++|++|...|+.||..||++||.+|++.|++++|.++|.+|.+.+..++..+|+.|.++|... ..++
T Consensus 728 gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~-y~ka 806 (1060)
T PLN03218 728 ALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRR-FEKA 806 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH-HHHH
Confidence 999999999999999999999999999999999999999999999999999999995555555898877876531 1122
Q ss_pred hhh-----hch-------hHHHHHHHhhcCCcccccccCCCCCceeEeecccccccccccCccccc-----ccCCH--HH
Q 002846 511 GKK-----KWN-------ESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAI-----IDLDP--IE 571 (874)
Q Consensus 511 ~~~-----~~d-------~~~v~ea~~~~G~~~~~m~~~G~~p~~vt~t~vl~~G~C~~c~~~L~~-----i~l~~--ee 571 (874)
+.. .|+ .....+|+. +|++|...|+.|+.++|..++ .+.|...+..+.. +.+.+ ..
T Consensus 807 ~~l~~~v~~f~~g~~~~~n~w~~~Al~----lf~eM~~~Gi~Pd~~T~~~vL-~cl~~~~~~~~~~~m~~~m~~~~~~~~ 881 (1060)
T PLN03218 807 CALGEPVVSFDSGRPQIENKWTSWALM----VYRETISAGTLPTMEVLSQVL-GCLQLPHDATLRNRLIENLGISADSQK 881 (1060)
T ss_pred hhhhhhhhhhhccccccccchHHHHHH----HHHHHHHCCCCCCHHHHHHHH-HHhcccccHHHHHHHHHHhccCCCCcc
Confidence 110 011 112244555 889999999999999996655 5555555432211 11111 11
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCcchhhhhh
Q 002846 572 TEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAVVDAA 612 (874)
Q Consensus 572 ~~~l~~~I~~~a~~~~~~~~~~~F~~~l~~~~pyDiVIDGa 612 (874)
+..+...|-++ .....+++..|.+|+..+..+++..+-.
T Consensus 882 ~~~y~~Li~g~--~~~~~~A~~l~~em~~~Gi~p~~~~~~~ 920 (1060)
T PLN03218 882 QSNLSTLVDGF--GEYDPRAFSLLEEAASLGVVPSVSFKKS 920 (1060)
T ss_pred hhhhHHHHHhh--ccChHHHHHHHHHHHHcCCCCCcccccC
Confidence 22222222221 1123578999999999987777765443
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.3e-48 Score=477.36 Aligned_cols=399 Identities=14% Similarity=0.110 Sum_probs=318.8
Q ss_pred ccchhhhhhhchHHHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 002846 146 KSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG 225 (874)
Q Consensus 146 ~~~~~~~~~l~~~~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd 225 (874)
+...+||..+. .+++.++.+.|.++|++|... |+.||+++||+||.+|++.|++++|+++|++|.+.|+.||
T Consensus 435 pd~~Tyn~LL~--a~~k~g~~e~A~~lf~~M~~~------Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pd 506 (1060)
T PLN03218 435 PTLSTFNMLMS--VCASSQDIDGALRVLRLVQEA------GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEAN 506 (1060)
T ss_pred CCHHHHHHHHH--HHHhCcCHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCC
Confidence 67788888888 888999999999999999554 4667779999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCC-chhhhHhhhcCcccChhhhhcCChHHHH
Q 002846 226 QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLD 304 (874)
Q Consensus 226 ~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~-d~vtyn~LI~~~~~~~~~~~~g~~e~A~ 304 (874)
.+|||+||.+|+ +.|++++|.++|. +|... |+. |.++||+||.+ ||+.|++++|.
T Consensus 507 vvTynaLI~gy~----------k~G~~eeAl~lf~-------~M~~~-Gv~PD~vTYnsLI~a------~~k~G~~deA~ 562 (1060)
T PLN03218 507 VHTFGALIDGCA----------RAGQVAKAFGAYG-------IMRSK-NVKPDRVVFNALISA------CGQSGAVDRAF 562 (1060)
T ss_pred HHHHHHHHHHHH----------HCcCHHHHHHHHH-------HHHHc-CCCCCHHHHHHHHHH------HHHCCCHHHHH
Confidence 999999999999 8899999999994 77766 775 88889999999 99999999999
Q ss_pred HHHHHHHH--cCCCCCeeeec--------cccHHHHHHhhhcC-----CCCcccccccccccCCccchHHHHHHhcCCHH
Q 002846 305 STFNEKEN--LGQFSNGHMKL--------NSQLLDGRSNLERG-----PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQ 369 (874)
Q Consensus 305 ~lf~eM~~--~Gi~Pd~~ty~--------~g~~~eA~~l~~~m-----~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~ 369 (874)
++|++|.. .|+.||.++|+ .|++++|..+|++| .|+..+| |++|.+|++.|+++
T Consensus 563 ~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~ty-----------nsLI~ay~k~G~~d 631 (1060)
T PLN03218 563 DVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVY-----------TIAVNSCSQKGDWD 631 (1060)
T ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHH-----------HHHHHHHHhcCCHH
Confidence 99999976 67899999998 88999999999998 6788899 99999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHH
Q 002846 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHML 449 (874)
Q Consensus 370 ~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~ 449 (874)
+|.++|++|...|+.||..||++||++|++.|++++|+++|++|.+.|+.||..+|++||.+||+.|++++|.++|++|.
T Consensus 632 eAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~ 711 (1060)
T PLN03218 632 FALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK 711 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCChhHHHH-HHHHHhcchHHHhhhhhchhHHHHHHHhhcC
Q 002846 450 EHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKWFNSKEAARLGKKKWNESLIKDTMENKG 528 (874)
Q Consensus 450 ~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~T~~~-I~~~~~s~~~~~a~~~~~d~~~v~ea~~~~G 528 (874)
+.|+.||..+||+||.+|++.|++++|.++|++|...+..|...||++ |.++++.+.. .+|..
T Consensus 712 ~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~l-------------e~A~~--- 775 (1060)
T PLN03218 712 SIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA-------------DVGLD--- 775 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH-------------HHHHH---
Confidence 999999999999999999999999999999999998844444448887 5555555543 33333
Q ss_pred CcccccccCCCCCceeEeecccccccccccCcccccccCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCcchh
Q 002846 529 GGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAV 608 (874)
Q Consensus 529 ~~~~~m~~~G~~p~~vt~t~vl~~G~C~~c~~~L~~i~l~~ee~~~l~~~I~~~a~~~~~~~~~~~F~~~l~~~~pyDiV 608 (874)
++..|...|+.|+.++|.. ++ |.|... --.+..+. +....|.. .......+-...++..|++|++.+-.||.+
T Consensus 776 -l~~~M~k~Gi~pd~~tyns-LI-glc~~~--y~ka~~l~-~~v~~f~~-g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~ 848 (1060)
T PLN03218 776 -LLSQAKEDGIKPNLVMCRC-IT-GLCLRR--FEKACALG-EPVVSFDS-GRPQIENKWTSWALMVYRETISAGTLPTME 848 (1060)
T ss_pred -HHHHHHHcCCCCCHHHHHH-HH-HHHHHH--HHHHhhhh-hhhhhhhc-cccccccchHHHHHHHHHHHHHCCCCCCHH
Confidence 6677888889999988844 44 565421 00001110 00111100 000001122346888999999888666654
Q ss_pred hh
Q 002846 609 VD 610 (874)
Q Consensus 609 ID 610 (874)
.=
T Consensus 849 T~ 850 (1060)
T PLN03218 849 VL 850 (1060)
T ss_pred HH
Confidence 33
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.8e-46 Score=463.35 Aligned_cols=420 Identities=12% Similarity=0.022 Sum_probs=307.2
Q ss_pred ccchhhhhhhchHHHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 002846 146 KSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG 225 (874)
Q Consensus 146 ~~~~~~~~~l~~~~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd 225 (874)
+...+||..+. .+++.++.++|+++|++|... |+.||.+||+++|.+|++.+++..+.+++..|.+.|+.||
T Consensus 150 ~d~~~~n~li~--~~~~~g~~~~A~~~f~~M~~~------g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~ 221 (857)
T PLN03077 150 RDLFSWNVLVG--GYAKAGYFDEALCLYHRMLWA------GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELD 221 (857)
T ss_pred CCeeEHHHHHH--HHHhCCCHHHHHHHHHHHHHc------CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcc
Confidence 34556666666 666777777777777777433 3445556666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHH
Q 002846 226 QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDS 305 (874)
Q Consensus 226 ~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~ 305 (874)
..+||+||.+|+ ++|++++|..+|+ +|... |+++||+||.+ |++.|++++|.+
T Consensus 222 ~~~~n~Li~~y~----------k~g~~~~A~~lf~-------~m~~~----d~~s~n~li~~------~~~~g~~~eAl~ 274 (857)
T PLN03077 222 VDVVNALITMYV----------KCGDVVSARLVFD-------RMPRR----DCISWNAMISG------YFENGECLEGLE 274 (857)
T ss_pred cchHhHHHHHHh----------cCCCHHHHHHHHh-------cCCCC----CcchhHHHHHH------HHhCCCHHHHHH
Confidence 666666666666 8888888888885 55432 77888888888 888888888888
Q ss_pred HHHHHHHcCCCCCeeeec-------------------------------------------cccHHHHHHhhhcC-CCCc
Q 002846 306 TFNEKENLGQFSNGHMKL-------------------------------------------NSQLLDGRSNLERG-PDDQ 341 (874)
Q Consensus 306 lf~eM~~~Gi~Pd~~ty~-------------------------------------------~g~~~eA~~l~~~m-~pd~ 341 (874)
+|.+|...|+.||.+||+ .|++++|..+|++| .||+
T Consensus 275 lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~ 354 (857)
T PLN03077 275 LFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDA 354 (857)
T ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCe
Confidence 888888888888877776 57788888888888 7888
Q ss_pred ccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 002846 342 SRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR 421 (874)
Q Consensus 342 ~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd 421 (874)
++| |+||.+|++.|++++|+++|++|...|+.||..||+++|.+|++.|++++|.++++.|.+.|+.|+
T Consensus 355 ~s~-----------n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~ 423 (857)
T PLN03077 355 VSW-----------TAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISY 423 (857)
T ss_pred eeH-----------HHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcc
Confidence 888 888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 002846 422 LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKW 501 (874)
Q Consensus 422 ~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~T~~~I~~~ 501 (874)
..+||+||.+|+++|++++|.++|++|.+ +|..+|++||.+|++.|+.++|..+|++|... ..|...||..+...
T Consensus 424 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~-~~pd~~t~~~lL~a 498 (857)
T PLN03077 424 VVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSA 498 (857)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC-CCCCHhHHHHHHHH
Confidence 88888888888888888888888888865 67788888888888888888888888888753 33333477774444
Q ss_pred HhcchHHHhhhhhchhHHHHHHHhhcCCcccccccCCCCCceeEeecccccccccccCccc--ccccCCHHHHHHHHHHH
Q 002846 502 FNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKL--AIIDLDPIETEKFAESV 579 (874)
Q Consensus 502 ~~s~~~~~a~~~~~d~~~v~ea~~~~G~~~~~m~~~G~~p~~vt~t~vl~~G~C~~c~~~L--~~i~l~~ee~~~l~~~I 579 (874)
|......+.+ .+ ++..|...|+.++...+ +.+++++|+++...- ..++-.+.+...|...|
T Consensus 499 ~~~~g~l~~~------------~~----i~~~~~~~g~~~~~~~~-naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI 561 (857)
T PLN03077 499 CARIGALMCG------------KE----IHAHVLRTGIGFDGFLP-NALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILL 561 (857)
T ss_pred HhhhchHHHh------------HH----HHHHHHHhCCCccceec-hHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHH
Confidence 4432221211 11 34445667888898888 778899988876432 22222245677889999
Q ss_pred HHHHHhccchHHHHHHHHHHhhcCCcchhhhhhhhhccccCCCChhhHHHHHHHHHHh
Q 002846 580 ASIAIKRERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQK 637 (874)
Q Consensus 580 ~~~a~~~~~~~~~~~F~~~l~~~~pyDiVIDGaNv~~~~~~~f~~~~l~~vv~~l~~~ 637 (874)
..++.+|...++++.|.+|.+.+..+|.+.=..-+.-|.+.| .++.+.+.|.++
T Consensus 562 ~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g----~v~ea~~~f~~M 615 (857)
T PLN03077 562 TGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSG----MVTQGLEYFHSM 615 (857)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcC----hHHHHHHHHHHH
Confidence 999999999999999999999876666654433333343333 355555555554
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7.8e-44 Score=433.99 Aligned_cols=416 Identities=12% Similarity=0.088 Sum_probs=346.7
Q ss_pred cchhhhhhhchHHHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 002846 147 SSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ 226 (874)
Q Consensus 147 ~~~~~~~~l~~~~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~ 226 (874)
...++|..+. .+.+.++..+|+++|+.|...+ +..||..+|+++|.+|++.++++.|.+++..|.+.|+.||.
T Consensus 86 ~~~~~~~~i~--~l~~~g~~~~Al~~f~~m~~~~-----~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~ 158 (697)
T PLN03081 86 SGVSLCSQIE--KLVACGRHREALELFEILEAGC-----PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQ 158 (697)
T ss_pred CceeHHHHHH--HHHcCCCHHHHHHHHHHHHhcC-----CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcch
Confidence 4456777777 8889999999999999995432 35688899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHH
Q 002846 227 YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDST 306 (874)
Q Consensus 227 ~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~l 306 (874)
.+||.||++|+ ++|++++|..+|+ +|.+ +|+++||+||.+ |++.|++++|.++
T Consensus 159 ~~~n~Li~~y~----------k~g~~~~A~~lf~-------~m~~----~~~~t~n~li~~------~~~~g~~~~A~~l 211 (697)
T PLN03081 159 YMMNRVLLMHV----------KCGMLIDARRLFD-------EMPE----RNLASWGTIIGG------LVDAGNYREAFAL 211 (697)
T ss_pred HHHHHHHHHHh----------cCCCHHHHHHHHh-------cCCC----CCeeeHHHHHHH------HHHCcCHHHHHHH
Confidence 99999999999 9999999999995 6654 389999999999 9999999999999
Q ss_pred HHHHHHcCCCCCeeee-----------------------------------c--------cccHHHHHHhhhcC-CCCcc
Q 002846 307 FNEKENLGQFSNGHMK-----------------------------------L--------NSQLLDGRSNLERG-PDDQS 342 (874)
Q Consensus 307 f~eM~~~Gi~Pd~~ty-----------------------------------~--------~g~~~eA~~l~~~m-~pd~~ 342 (874)
|++|.+.|+.||..|| + +|++++|..+|++| .+|++
T Consensus 212 f~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~v 291 (697)
T PLN03081 212 FREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTV 291 (697)
T ss_pred HHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChh
Confidence 9999988877776655 3 78999999999999 89999
Q ss_pred cccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc
Q 002846 343 RKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422 (874)
Q Consensus 343 ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~ 422 (874)
+| |+||.+|++.|+.++|+++|++|...|+.||..||++||.+|++.|++++|.+++.+|.+.|+.||.
T Consensus 292 t~-----------n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~ 360 (697)
T PLN03081 292 AW-----------NSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDI 360 (697)
T ss_pred HH-----------HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCe
Confidence 99 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCChhHHHH-HHHH
Q 002846 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKW 501 (874)
Q Consensus 423 ~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~T~~~-I~~~ 501 (874)
.+||+||.+||++|++++|.++|++|.+ ||..+||+||.+|++.|+.++|.++|++|...+..|+..||+. |.++
T Consensus 361 ~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 436 (697)
T PLN03081 361 VANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC 436 (697)
T ss_pred eehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999975 8999999999999999999999999999999955555559988 5555
Q ss_pred HhcchHHHhhhhhchhHHHHHHHhhcCCccccccc-CCCCCceeEeecccccccccccCccc--ccc---cCCHHHHHHH
Q 002846 502 FNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGW-LGKGKWIVSHTTVGGDALCKCCGEKL--AII---DLDPIETEKF 575 (874)
Q Consensus 502 ~~s~~~~~a~~~~~d~~~v~ea~~~~G~~~~~m~~-~G~~p~~vt~t~vl~~G~C~~c~~~L--~~i---~l~~ee~~~l 575 (874)
+..+. ++++.+ .|..|.. .|+.|+..+| +.+++++|+.+...- ..+ .+.+ +...|
T Consensus 437 ~~~g~-------------~~~a~~----~f~~m~~~~g~~p~~~~y-~~li~~l~r~G~~~eA~~~~~~~~~~p-~~~~~ 497 (697)
T PLN03081 437 RYSGL-------------SEQGWE----IFQSMSENHRIKPRAMHY-ACMIELLGREGLLDEAYAMIRRAPFKP-TVNMW 497 (697)
T ss_pred hcCCc-------------HHHHHH----HHHHHHHhcCCCCCccch-HhHHHHHHhcCCHHHHHHHHHHCCCCC-CHHHH
Confidence 44444 344444 6777764 6999999999 778899998886432 222 1122 23346
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHhhcC----CcchhhhhhhhhccccCCCChhhHHHHHHHHHH
Q 002846 576 AESVASIAIKRERNSSFQKFQKWLDYYG----PFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQ 636 (874)
Q Consensus 576 ~~~I~~~a~~~~~~~~~~~F~~~l~~~~----pyDiVIDGaNv~~~~~~~f~~~~l~~vv~~l~~ 636 (874)
...+.....+|....+...+++.+.-.+ .|..++++ |.+.| .++....+.+.+++
T Consensus 498 ~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~-----y~~~G-~~~~A~~v~~~m~~ 556 (697)
T PLN03081 498 AALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNL-----YNSSG-RQAEAAKVVETLKR 556 (697)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHH-----HHhCC-CHHHHHHHHHHHHH
Confidence 6666777777887777777777654332 34444443 33333 34455555555554
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.6e-43 Score=440.67 Aligned_cols=418 Identities=13% Similarity=0.044 Sum_probs=325.1
Q ss_pred ccchhhhhhhchHHHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 002846 146 KSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG 225 (874)
Q Consensus 146 ~~~~~~~~~l~~~~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd 225 (874)
+...+||..+. .+++.++..+|+++|++|...| +.||.+||+++|.+|++.|+++.|.+++..|.+.|+.||
T Consensus 251 ~d~~s~n~li~--~~~~~g~~~eAl~lf~~M~~~g------~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d 322 (857)
T PLN03077 251 RDCISWNAMIS--GYFENGECLEGLELFFTMRELS------VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVD 322 (857)
T ss_pred CCcchhHHHHH--HHHhCCCHHHHHHHHHHHHHcC------CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccc
Confidence 45667888888 8888888888888888886554 456668888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHH
Q 002846 226 QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDS 305 (874)
Q Consensus 226 ~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~ 305 (874)
..+||+||.+|+ ++|++++|..+|+ +|.. +|+++||+||.+ |++.|++++|.+
T Consensus 323 ~~~~n~Li~~y~----------k~g~~~~A~~vf~-------~m~~----~d~~s~n~li~~------~~~~g~~~~A~~ 375 (857)
T PLN03077 323 VSVCNSLIQMYL----------SLGSWGEAEKVFS-------RMET----KDAVSWTAMISG------YEKNGLPDKALE 375 (857)
T ss_pred hHHHHHHHHHHH----------hcCCHHHHHHHHh-------hCCC----CCeeeHHHHHHH------HHhCCCHHHHHH
Confidence 888888888888 8999999999995 5643 378899999999 999999999999
Q ss_pred HHHHHHHcCCCCCeeeec-------------------------------------------cccHHHHHHhhhcC-CCCc
Q 002846 306 TFNEKENLGQFSNGHMKL-------------------------------------------NSQLLDGRSNLERG-PDDQ 341 (874)
Q Consensus 306 lf~eM~~~Gi~Pd~~ty~-------------------------------------------~g~~~eA~~l~~~m-~pd~ 341 (874)
+|++|...|+.||.+||+ .|++++|..+|++| .+|+
T Consensus 376 lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~ 455 (857)
T PLN03077 376 TYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDV 455 (857)
T ss_pred HHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCe
Confidence 999999999999999886 57888999999999 8899
Q ss_pred ccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 002846 342 SRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR 421 (874)
Q Consensus 342 ~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd 421 (874)
++| |+||.+|++.|+.++|+++|++|.. ++.||..||+++|.+|++.|+++.+.+++..|.+.|+.||
T Consensus 456 vs~-----------~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~ 523 (857)
T PLN03077 456 ISW-----------TSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFD 523 (857)
T ss_pred eeH-----------HHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCcc
Confidence 999 9999999999999999999999985 6899999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCChhHHHH-HHH
Q 002846 422 LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAK 500 (874)
Q Consensus 422 ~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~T~~~-I~~ 500 (874)
..+||+||.+|+++|++++|+++|++| .||..+||+||.+|++.|+.++|.++|++|.+.+..|+..||+. |.+
T Consensus 524 ~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a 598 (857)
T PLN03077 524 GFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA 598 (857)
T ss_pred ceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH
Confidence 999999999999999999999999987 58999999999999999999999999999999844444448888 455
Q ss_pred HHhcchHHHhhhhhchhHHHHHHHhhcCCcccccc-cCCCCCceeEeecccccccccccCcccc--cc---cCCHHHHHH
Q 002846 501 WFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLG-WLGKGKWIVSHTTVGGDALCKCCGEKLA--II---DLDPIETEK 574 (874)
Q Consensus 501 ~~~s~~~~~a~~~~~d~~~v~ea~~~~G~~~~~m~-~~G~~p~~vt~t~vl~~G~C~~c~~~L~--~i---~l~~ee~~~ 574 (874)
+++.+. ++++.. .|+.|. ..|+.|+..+| +.+++++|+++...-+ .+ .+.| +...
T Consensus 599 ~~~~g~-------------v~ea~~----~f~~M~~~~gi~P~~~~y-~~lv~~l~r~G~~~eA~~~~~~m~~~p-d~~~ 659 (857)
T PLN03077 599 CSRSGM-------------VTQGLE----YFHSMEEKYSITPNLKHY-ACVVDLLGRAGKLTEAYNFINKMPITP-DPAV 659 (857)
T ss_pred HhhcCh-------------HHHHHH----HHHHHHHHhCCCCchHHH-HHHHHHHHhCCCHHHHHHHHHHCCCCC-CHHH
Confidence 444443 445555 777887 68999999998 6788888888753221 11 1222 2334
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHhhcCCcchhhhhhhhhccccCCCChhhHHHHHHHHHH
Q 002846 575 FAESVASIAIKRERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQ 636 (874)
Q Consensus 575 l~~~I~~~a~~~~~~~~~~~F~~~l~~~~pyDiVIDGaNv~~~~~~~f~~~~l~~vv~~l~~ 636 (874)
|...+....+++.....-..+++.++ ..|-+.-.--+..-.|.+.| .+..+..|-+.+++
T Consensus 660 ~~aLl~ac~~~~~~e~~e~~a~~l~~-l~p~~~~~y~ll~n~ya~~g-~~~~a~~vr~~M~~ 719 (857)
T PLN03077 660 WGALLNACRIHRHVELGELAAQHIFE-LDPNSVGYYILLCNLYADAG-KWDEVARVRKTMRE 719 (857)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHh-hCCCCcchHHHHHHHHHHCC-ChHHHHHHHHHHHH
Confidence 55555555555655433333333333 22222111001111233322 45666666666655
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.7e-43 Score=428.08 Aligned_cols=386 Identities=11% Similarity=-0.009 Sum_probs=294.8
Q ss_pred cccccccchhhhhhhchHHHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 002846 141 KKIGIKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQRE 220 (874)
Q Consensus 141 ~~~~~~~~~~~~~~l~~~~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~ 220 (874)
+........++|..+. .+++.++.++|.++|++| ..||+++||++|.+|++.|++++|+++|++|.+.
T Consensus 151 ~~g~~~~~~~~n~Li~--~y~k~g~~~~A~~lf~~m----------~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~ 218 (697)
T PLN03081 151 SSGFEPDQYMMNRVLL--MHVKCGMLIDARRLFDEM----------PERNLASWGTIIGGLVDAGNYREAFALFREMWED 218 (697)
T ss_pred HhCCCcchHHHHHHHH--HHhcCCCHHHHHHHHhcC----------CCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 3445567788999987 899999999999999999 2467799999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCC-chhhhHhhhcCcccChhhhhcCC
Q 002846 221 GIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYR 299 (874)
Q Consensus 221 Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~-d~vtyn~LI~~~~~~~~~~~~g~ 299 (874)
|+.||..||+++|.+|+ +.|..+.+.+++. .+.+. |+. |..+||+||++ |++.|+
T Consensus 219 g~~p~~~t~~~ll~a~~----------~~~~~~~~~~l~~-------~~~~~-g~~~d~~~~n~Li~~------y~k~g~ 274 (697)
T PLN03081 219 GSDAEPRTFVVMLRASA----------GLGSARAGQQLHC-------CVLKT-GVVGDTFVSCALIDM------YSKCGD 274 (697)
T ss_pred CCCCChhhHHHHHHHHh----------cCCcHHHHHHHHH-------HHHHh-CCCccceeHHHHHHH------HHHCCC
Confidence 99999999999999999 6677777777763 44444 555 66777777777 777777
Q ss_pred hHHHHHHHHHHHHcCCCCCeeeec--------cccHHHHHHhhhcC-----CCCcccccccccccCCccchHHHHHHhcC
Q 002846 300 FDDLDSTFNEKENLGQFSNGHMKL--------NSQLLDGRSNLERG-----PDDQSRKKDWSIDNQDADEIRLSEDAKKY 366 (874)
Q Consensus 300 ~e~A~~lf~eM~~~Gi~Pd~~ty~--------~g~~~eA~~l~~~m-----~pd~~ty~~w~i~~~~~~n~lI~~~~k~g 366 (874)
+++|.++|++|.. +|+++|+ .|+.++|..+|++| .||.+|| +++|.+|++.|
T Consensus 275 ~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~-----------~~ll~a~~~~g 339 (697)
T PLN03081 275 IEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTF-----------SIMIRIFSRLA 339 (697)
T ss_pred HHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH-----------HHHHHHHHhcc
Confidence 7777777777753 5777777 67777777777777 6777777 88888888888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHH
Q 002846 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEE 446 (874)
Q Consensus 367 ~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~ 446 (874)
++++|.+++++|.+.|+.||..+||+||++|+++|++++|.++|++|. .||+.+||+||.+|++.|+.++|.++|+
T Consensus 340 ~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~ 415 (697)
T PLN03081 340 LLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFE 415 (697)
T ss_pred chHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888875 3788888888888888888888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHh-cCCCCChhHHHH-HHHHHhcchHHHhhhhhchhHHHHHHH
Q 002846 447 HMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT-SVRKVSPSTADV-IAKWFNSKEAARLGKKKWNESLIKDTM 524 (874)
Q Consensus 447 eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~-~~~~~sp~T~~~-I~~~~~s~~~~~a~~~~~d~~~v~ea~ 524 (874)
+|.+.|+.||..||++||.+|++.|.+++|.++|+.|.+ .+..|...+|+. |..+++.+...+|.
T Consensus 416 ~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~------------- 482 (697)
T PLN03081 416 RMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY------------- 482 (697)
T ss_pred HHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH-------------
Confidence 888888888888888888888888888888888888875 433344447777 66776666544333
Q ss_pred hhcCCcccccccCCCCCceeEeecccccccccccCcccc------cccCCHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Q 002846 525 ENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLA------IIDLDPIETEKFAESVASIAIKRERNSSFQKFQKW 598 (874)
Q Consensus 525 ~~~G~~~~~m~~~G~~p~~vt~t~vl~~G~C~~c~~~L~------~i~l~~ee~~~l~~~I~~~a~~~~~~~~~~~F~~~ 598 (874)
. .+..| +..|+..+| +.++.+.|..+...+. .+.+.+.....+...+..++..|...++.+.|..|
T Consensus 483 ~----~~~~~---~~~p~~~~~-~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m 554 (697)
T PLN03081 483 A----MIRRA---PFKPTVNMW-AALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETL 554 (697)
T ss_pred H----HHHHC---CCCCCHHHH-HHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHH
Confidence 2 22222 456777777 5566666665544321 12334433334444445566678888888999998
Q ss_pred Hhhc
Q 002846 599 LDYY 602 (874)
Q Consensus 599 l~~~ 602 (874)
.+++
T Consensus 555 ~~~g 558 (697)
T PLN03081 555 KRKG 558 (697)
T ss_pred HHcC
Confidence 8876
No 7
>PF11977 RNase_Zc3h12a: Zc3h12a-like Ribonuclease NYN domain; InterPro: IPR021869 This domain is found in the Zc3h12a protein which has shown to be a ribonuclease that controls the stability of a set of inflammatory genes []. It has been suggested that this domain belongs to the PIN domain superfamily []. ; PDB: 3V33_A 3V34_B 3V32_B.
Probab=99.82 E-value=5.6e-21 Score=189.41 Aligned_cols=128 Identities=29% Similarity=0.422 Sum_probs=95.5
Q ss_pred chhhhhhhhhccc--cCCCChhhHHHHHHHHHHhCCCCCceEEEeccccccCCCCCChhhHHHHHHHHhcCceEecCCCC
Q 002846 606 EAVVDAANVGLYS--QRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGS 683 (874)
Q Consensus 606 DiVIDGaNv~~~~--~~~f~~~~l~~vv~~l~~~~~~~~~~lvvl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tp~~s 683 (874)
-+||||+|||+.. +..|+..+|..+|++|.+ .|..+++|++..+........+.+.+.+++|.+.+.++.||+++
T Consensus 4 ~VVIDG~NVA~~~~~~~~f~~~~i~~~v~~~~~---rG~~~v~v~~~~~~~~~~~~~~~~~~~L~~l~~~~~i~~tp~~~ 80 (155)
T PF11977_consen 4 PVVIDGSNVAYSHGNQKFFSVRGIQIAVEYFKS---RGHEVVVVFPPNYRYKKLAKKSDDQEELEKLIRKGIIYFTPSGS 80 (155)
T ss_dssp -EEEEHHHHHHHHTTTTSEEHHHHHHHHHHHHH---TT---EEEEEEGGGGS-TTS-EESTCHHHHHHHTTSEEEE-EEE
T ss_pred EEEEeCHHHHhhcCCCCCcCHHHHHHHHHHHHH---cCCCeEEEEcchhhhccccCCCChHHHHHHHHHCCeEEEcCCCC
Confidence 3799999998643 335899999999999999 68878888876653322344677888999999999999999999
Q ss_pred C--------ccHHHHHHHHhcCceEEeCcccccccccccCCchHHhHhhcCeeEEEecCCCCcc
Q 002846 684 N--------DDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRFSFSDAGPEF 739 (874)
Q Consensus 684 ~--------DD~y~LyAa~~~~~~~vsnD~mRdH~~~ll~~~~F~rW~~~hqv~~~~~~~~~~~ 739 (874)
+ ||||||++|...+|+|||||+||||.+ ....|.+|.++|+|+|+|......+
T Consensus 81 ~~g~~~~~ydD~~il~~A~~~~a~IVSND~frD~~~---~~~~~~~~~~~~~i~~tf~~~~~~~ 141 (155)
T PF11977_consen 81 NYGSRSRNYDDRYILYYAEEKDAVIVSNDRFRDHIF---ENPELRRWIERRLIRFTFVGDEFMP 141 (155)
T ss_dssp ETTEEEEB-HHHHHHHHHHHTT-EEE-S---HHHHH---H-HHHHHHHHHHEE--EEETTEEE-
T ss_pred CCCCcccccchHHHHHHHHHcCCEEEeCchHHHHhh---cchHHHHHHHHeeeeEEEECCEEEc
Confidence 7 999999999999999999999999999 6678999999999999997544433
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.66 E-value=2.5e-14 Score=162.27 Aligned_cols=285 Identities=14% Similarity=0.056 Sum_probs=192.9
Q ss_pred hcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHh
Q 002846 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG---QYHYNVLLYLCSS 238 (874)
Q Consensus 162 k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd---~~tyn~LL~a~~~ 238 (874)
..++.++|...|++|.... +.+..+|..+...+.+.|++++|+.+++.+...+-.++ ...+..|...|.
T Consensus 47 ~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~- 118 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVD-------PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL- 118 (389)
T ss_pred hcCChHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-
Confidence 5578889999999996532 12446889999999999999999999999987543322 256777788888
Q ss_pred cccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCC
Q 002846 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (874)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd 318 (874)
+.|++++|..+|. ++.+. ...+..+++.++.. +++.|++++|.++|..|...+-.++
T Consensus 119 ---------~~g~~~~A~~~~~-------~~l~~-~~~~~~~~~~la~~------~~~~g~~~~A~~~~~~~~~~~~~~~ 175 (389)
T PRK11788 119 ---------KAGLLDRAEELFL-------QLVDE-GDFAEGALQQLLEI------YQQEKDWQKAIDVAERLEKLGGDSL 175 (389)
T ss_pred ---------HCCCHHHHHHHHH-------HHHcC-CcchHHHHHHHHHH------HHHhchHHHHHHHHHHHHHhcCCcc
Confidence 7899999999995 55443 22366779999999 9999999999999999988763332
Q ss_pred ee----eec--------cccHHHHHHhhhcC---CCCc-ccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002846 319 GH----MKL--------NSQLLDGRSNLERG---PDDQ-SRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDE 382 (874)
Q Consensus 319 ~~----ty~--------~g~~~eA~~l~~~m---~pd~-~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~G 382 (874)
.. .|. .++.++|...|+++ .|+. ..+ ..+...+.+.|++++|.++|+++...+
T Consensus 176 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-----------~~la~~~~~~g~~~~A~~~~~~~~~~~ 244 (389)
T PRK11788 176 RVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRAS-----------ILLGDLALAQGDYAAAIEALERVEEQD 244 (389)
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHH-----------HHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 21 111 46666666666665 3332 233 445566666667777777776666543
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 002846 383 VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEA 462 (874)
Q Consensus 383 v~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~ 462 (874)
......+++.|+.+|+..|++++|...++++.+. .|+...+..+...+.+.|+.++|..+++++.+. .|+..+++.
T Consensus 245 p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~ 320 (389)
T PRK11788 245 PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHR 320 (389)
T ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHH
Confidence 2222345666666677777777777766666654 355555566666666667777777776666654 366666666
Q ss_pred HHHHHHh---cCCchHHHHHHHHHHhcCCCCCh
Q 002846 463 LLRVSVE---AGKGDRVYYLLHKLRTSVRKVSP 492 (874)
Q Consensus 463 LI~~~~~---~G~~d~A~~ll~~M~~~~~~~sp 492 (874)
++..++. .|+.+++..+|++|.+....+.|
T Consensus 321 l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 321 LLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred HHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 6666554 34666666666666665444444
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.54 E-value=1.3e-12 Score=148.23 Aligned_cols=262 Identities=14% Similarity=0.042 Sum_probs=204.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCC---
Q 002846 200 MCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--- 276 (874)
Q Consensus 200 a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~--- 276 (874)
.+...|++++|+..|.+|.+.+ +.+..++..+...+. ..|++++|..++. .+.......
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~----------~~g~~~~A~~~~~-------~~l~~~~~~~~~ 105 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFR----------RRGEVDRAIRIHQ-------NLLSRPDLTREQ 105 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHH----------HcCcHHHHHHHHH-------HHhcCCCCCHHH
Confidence 4567899999999999999763 234567888888888 7899999999995 454432222
Q ss_pred chhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeec--------cccHHHHHHhhhcC---CCCcc---
Q 002846 277 NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL--------NSQLLDGRSNLERG---PDDQS--- 342 (874)
Q Consensus 277 d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~--------~g~~~eA~~l~~~m---~pd~~--- 342 (874)
+...|..+... |.+.|++++|..+|.++.+.. .++..++. .|++++|...+..+ .|+..
T Consensus 106 ~~~~~~~La~~------~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 178 (389)
T PRK11788 106 RLLALQELGQD------YLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE 178 (389)
T ss_pred HHHHHHHHHHH------HHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH
Confidence 12457888888 999999999999999998752 12333343 78999999999988 23221
Q ss_pred ---cccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 002846 343 ---RKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN 419 (874)
Q Consensus 343 ---ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~ 419 (874)
.| ..+...+.+.|++++|..+|+++.+.. +.+..++..+...+.+.|++++|.++|+++...+-.
T Consensus 179 ~~~~~-----------~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 246 (389)
T PRK11788 179 IAHFY-----------CELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPE 246 (389)
T ss_pred HHHHH-----------HHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh
Confidence 12 445567788999999999999998754 334668888999999999999999999999876322
Q ss_pred CCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCChhHHHH-H
Q 002846 420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-I 498 (874)
Q Consensus 420 Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~T~~~-I 498 (874)
....+++.+..+|++.|+.++|..+++.+.+. .|+...+..+...+.+.|+.++|..+|.++.+. .|...++.. +
T Consensus 247 ~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~ 322 (389)
T PRK11788 247 YLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLL 322 (389)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHH
Confidence 22466888999999999999999999999886 478788899999999999999999999998887 555556655 4
Q ss_pred HHHH
Q 002846 499 AKWF 502 (874)
Q Consensus 499 ~~~~ 502 (874)
..++
T Consensus 323 ~~~~ 326 (389)
T PRK11788 323 DYHL 326 (389)
T ss_pred HHhh
Confidence 4444
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.48 E-value=7.4e-11 Score=146.09 Aligned_cols=303 Identities=12% Similarity=0.027 Sum_probs=220.3
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 002846 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (874)
Q Consensus 159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (874)
.....++..+|.+.|+.+..... + ....+..++..+.+.|++++|+.+++.+... .+.+..+|+.+..++.
T Consensus 406 ~~~~~~~~~~A~~~~~~a~~~~~--~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~- 476 (899)
T TIGR02917 406 SKLSQGDPSEAIADLETAAQLDP--E-----LGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYL- 476 (899)
T ss_pred HHHhCCChHHHHHHHHHHHhhCC--c-----chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHH-
Confidence 34467788889888888854321 1 1245566778888889999999999888753 3456778888888887
Q ss_pred cccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCC
Q 002846 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (874)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd 318 (874)
..|+.++|...|. ++... .-.+...+..+... +...|++++|.+.|+++..... .+
T Consensus 477 ---------~~~~~~~A~~~~~-------~a~~~-~~~~~~~~~~la~~------~~~~g~~~~A~~~~~~~~~~~~-~~ 532 (899)
T TIGR02917 477 ---------GKGDLAKAREAFE-------KALSI-EPDFFPAAANLARI------DIQEGNPDDAIQRFEKVLTIDP-KN 532 (899)
T ss_pred ---------hCCCHHHHHHHHH-------HHHhh-CCCcHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHhCc-Cc
Confidence 7788888888884 44332 22244556667777 8888888889888888877542 12
Q ss_pred eeeec--------cccHHHHHHhhhcC---CC-CcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 002846 319 GHMKL--------NSQLLDGRSNLERG---PD-DQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN 386 (874)
Q Consensus 319 ~~ty~--------~g~~~eA~~l~~~m---~p-d~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd 386 (874)
...+. .|+.++|...+.++ .| +...+ ..+...+.+.|+.++|..+++.+.... +.+
T Consensus 533 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-----------~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 600 (899)
T TIGR02917 533 LRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPA-----------LALAQYYLGKGQLKKALAILNEAADAA-PDS 600 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHH-----------HHHHHHHHHCCCHHHHHHHHHHHHHcC-CCC
Confidence 22222 77888888888877 33 33444 677888889999999999999987653 557
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002846 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (874)
Q Consensus 387 ~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~ 466 (874)
..+|..+..++...|++++|...|+.+.+.. ..+...+..+...|.+.|+.++|..+|+.+.+.. ..+..++..+...
T Consensus 601 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 678 (899)
T TIGR02917 601 PEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQL 678 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 7889999999999999999999999887653 2355677888888889999999999999887643 2357788888999
Q ss_pred HHhcCCchHHHHHHHHHHhcCCCCCh-hHHHH-HHHHHhcchHHHh
Q 002846 467 SVEAGKGDRVYYLLHKLRTSVRKVSP-STADV-IAKWFNSKEAARL 510 (874)
Q Consensus 467 ~~~~G~~d~A~~ll~~M~~~~~~~sp-~T~~~-I~~~~~s~~~~~a 510 (874)
+...|++++|..+++.|... .+.. ..+.. ...++..+...++
T Consensus 679 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A 722 (899)
T TIGR02917 679 LLAAKRTESAKKIAKSLQKQ--HPKAALGFELEGDLYLRQKDYPAA 722 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhh--CcCChHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999877 4333 24443 4445555554444
No 11
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.44 E-value=8.3e-11 Score=145.68 Aligned_cols=276 Identities=11% Similarity=-0.014 Sum_probs=168.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhh
Q 002846 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (874)
Q Consensus 192 ~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~ 271 (874)
..|..+...|.+.|++++|+..|+.+.+.. +.+...+..+..++. +.|+.++|...+. .+..
T Consensus 602 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~----------~~~~~~~A~~~~~-------~~~~ 663 (899)
T TIGR02917 602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYA----------VMKNYAKAITSLK-------RALE 663 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH----------HcCCHHHHHHHHH-------HHHh
Confidence 455555555555555555555555555332 223344444445554 4566666666663 2222
Q ss_pred cCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeec--------cccHHHHHHhhhcC---CCC
Q 002846 272 SRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL--------NSQLLDGRSNLERG---PDD 340 (874)
Q Consensus 272 ~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~--------~g~~~eA~~l~~~m---~pd 340 (874)
. .-.+..+|..+... ++..|++++|..+++.|...+.. +...+. .|+..+|...|..+ .|+
T Consensus 664 ~-~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 735 (899)
T TIGR02917 664 L-KPDNTEAQIGLAQL------LLAAKRTESAKKIAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS 735 (899)
T ss_pred c-CCCCHHHHHHHHHH------HHHcCCHHHHHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC
Confidence 1 11244556666666 66677777777777766665421 222221 56777777777765 455
Q ss_pred cccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 002846 341 QSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP 420 (874)
Q Consensus 341 ~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~P 420 (874)
..++ ..+...+.+.|+.++|.+.++.+.... +.+..+++.+...|...|+.++|..+|+++.+.. ++
T Consensus 736 ~~~~-----------~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~ 802 (899)
T TIGR02917 736 SQNA-----------IKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PD 802 (899)
T ss_pred chHH-----------HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CC
Confidence 4555 556677777777777777777776643 4466777777777777777777777777777653 34
Q ss_pred CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC-ChhHHH-HH
Q 002846 421 RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKV-SPSTAD-VI 498 (874)
Q Consensus 421 d~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~-sp~T~~-~I 498 (874)
+...++.+...+.+.|+ .+|..+++.+.... .-+...+..+...+...|++++|..+|+++.+. .+ .+.++. ..
T Consensus 803 ~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~l~ 878 (899)
T TIGR02917 803 NAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNI--APEAAAIRYHLA 878 (899)
T ss_pred CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCChHHHHHHH
Confidence 56667777777777777 66777777776542 123445566677777788888888888888876 33 334443 36
Q ss_pred HHHHhcchHHHh
Q 002846 499 AKWFNSKEAARL 510 (874)
Q Consensus 499 ~~~~~s~~~~~a 510 (874)
..+++.|...+|
T Consensus 879 ~~~~~~g~~~~A 890 (899)
T TIGR02917 879 LALLATGRKAEA 890 (899)
T ss_pred HHHHHcCCHHHH
Confidence 666666654444
No 12
>PF13041 PPR_2: PPR repeat family
Probab=99.27 E-value=8.7e-12 Score=99.41 Aligned_cols=49 Identities=22% Similarity=0.421 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 002846 189 SEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCS 237 (874)
Q Consensus 189 Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~ 237 (874)
||+++||++|++|++.|++++|+++|++|.+.|++||.+||++||++||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 8899999999999999999999999999999999999999999999998
No 13
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.27 E-value=9.2e-10 Score=120.11 Aligned_cols=220 Identities=16% Similarity=0.160 Sum_probs=164.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhh
Q 002846 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (874)
Q Consensus 192 ~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~ 271 (874)
.+=|.|+.. ...|.+..+.-+|+.|+..|+..+...--.|+...|-.+ ...+- |
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~N--------s~~~~-----~------------ 170 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYN--------SSNVP-----F------------ 170 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhc--------CCCCc-----c------------
Confidence 345555544 457899999999999999999988888888877766211 11110 0
Q ss_pred cCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCccccccccccc
Q 002846 272 SRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDN 351 (874)
Q Consensus 272 ~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~ 351 (874)
.-.+-|-.|...|- -...+|..|.+.+ .+|+-......||
T Consensus 171 ------------------------------~E~~~Fv~~~~~~E-~S~~sWK~G~vAd--L~~E~~PKT~et~------- 210 (625)
T KOG4422|consen 171 ------------------------------AEWEEFVGMRNFGE-DSTSSWKSGAVAD--LLFETLPKTDETV------- 210 (625)
T ss_pred ------------------------------hhHHHHhhcccccc-ccccccccccHHH--HHHhhcCCCchhH-------
Confidence 00122233333331 2333444555444 3344445556677
Q ss_pred CCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 002846 352 QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV 431 (874)
Q Consensus 352 ~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a 431 (874)
.+||.|+||--..++|.+++++-.....+.+..+||.||.+-.-.- ..+++.+|....+.||+.|||+++.+
T Consensus 211 ----s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL~c 282 (625)
T KOG4422|consen 211 ----SIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALLSC 282 (625)
T ss_pred ----HHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHHHH
Confidence 9999999999999999999999999988999999999998866433 38899999999999999999999999
Q ss_pred HHhCCChhH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCch-HHHHHHHHHHh
Q 002846 432 FCNNGDVDK----ACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGD-RVYYLLHKLRT 485 (874)
Q Consensus 432 ~~k~G~~~~----A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d-~A~~ll~~M~~ 485 (874)
..+.|+++. |.+++.+|++-||.|...+|..+|.-+++.++.. .|..++.++..
T Consensus 283 ~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N 341 (625)
T KOG4422|consen 283 AAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQN 341 (625)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHH
Confidence 999997765 5788999999999999999999999999998874 45555555544
No 14
>PF13041 PPR_2: PPR repeat family
Probab=99.23 E-value=1.4e-11 Score=98.17 Aligned_cols=49 Identities=20% Similarity=0.455 Sum_probs=27.8
Q ss_pred CCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 002846 420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468 (874)
Q Consensus 420 Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~ 468 (874)
||+.+||++|++||+.|++++|+++|++|.+.|+.||..||++||++||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 15
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.08 E-value=1.4e-08 Score=111.04 Aligned_cols=234 Identities=14% Similarity=0.109 Sum_probs=190.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhh
Q 002846 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (874)
Q Consensus 192 ~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~ 271 (874)
.+|.+||.++||--..++|.++|.+-.....+.+..+||.||.+-+-. ...+++. ||..
T Consensus 208 et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~--------------~~K~Lv~-------EMis 266 (625)
T KOG4422|consen 208 ETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS--------------VGKKLVA-------EMIS 266 (625)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh--------------ccHHHHH-------HHHH
Confidence 799999999999999999999999999999999999999999876621 2245553 7776
Q ss_pred cCCCC-chhhhHhhhcCcccChhhhhcCChHH----HHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccc
Q 002846 272 SRDMD-NNGQLDYGSSPMIDKLESNSSYRFDD----LDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKD 346 (874)
Q Consensus 272 ~~gi~-d~vtyn~LI~~~~~~~~~~~~g~~e~----A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~ 346 (874)
. .+. |..|+|+++.+ ..+.|+++. |.+++.||++.|+.|..-+|
T Consensus 267 q-km~Pnl~TfNalL~c------~akfg~F~~ar~aalqil~EmKeiGVePsLsSy------------------------ 315 (625)
T KOG4422|consen 267 Q-KMTPNLFTFNALLSC------AAKFGKFEDARKAALQILGEMKEIGVEPSLSSY------------------------ 315 (625)
T ss_pred h-hcCCchHhHHHHHHH------HHHhcchHHHHHHHHHHHHHHHHhCCCcchhhH------------------------
Confidence 6 444 89999999999 999998865 57889999999999999999
Q ss_pred cccccCCccchHHHHHHhcCCHHH-HHHHHHHHH----HCCCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 002846 347 WSIDNQDADEIRLSEDAKKYAFQR-GFEIYEKMC----LDEVPM----NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG 417 (874)
Q Consensus 347 w~i~~~~~~n~lI~~~~k~g~~~~-A~~lf~~M~----~~Gv~P----d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~G 417 (874)
-.+|.-+++.++..+ |..+..+.. .+-++| |..-|.+-+..|.+..+.+.|.++..-.+...
T Consensus 316 ---------h~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~ 386 (625)
T KOG4422|consen 316 ---------HLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGD 386 (625)
T ss_pred ---------HHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Confidence 888888888887633 444443333 333333 55667888999999999999999987765331
Q ss_pred ----CCCC---cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 418 ----INPR---LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 418 ----i~Pd---~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
+.|+ ..-|.-+....|....++.-+..|+.|.-+-+-|+..+..-++++..-.|.++-.-+++..|..-
T Consensus 387 N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ 462 (625)
T KOG4422|consen 387 NWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEY 462 (625)
T ss_pred chhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHh
Confidence 3343 23466788899999999999999999998888899999999999999999999999999988887
No 16
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.98 E-value=3.2e-09 Score=124.56 Aligned_cols=244 Identities=14% Similarity=0.076 Sum_probs=170.1
Q ss_pred HHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCC
Q 002846 171 KVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSG 250 (874)
Q Consensus 171 ~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G 250 (874)
.++-.|...|+.|++ +||.++|..||..|+++.|- +|.-|+-..+..+...|++++.+...+ +
T Consensus 11 nfla~~e~~gi~PnR------vtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~A----------n 73 (1088)
T KOG4318|consen 11 NFLALHEISGILPNR------VTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEA----------N 73 (1088)
T ss_pred hHHHHHHHhcCCCch------hhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhccccc----------c
Confidence 455667667766666 99999999999999999999 999999888888899999999888733 3
Q ss_pred CHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHH-HHH-------cC--------
Q 002846 251 SGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNE-KEN-------LG-------- 314 (874)
Q Consensus 251 ~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~e-M~~-------~G-------- 314 (874)
+.+.+. .+-.-||+.|..+ |...|++.. ++..++ |.. .|
T Consensus 74 d~Enpk------------------ep~aDtyt~Ll~a------yr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~f 128 (1088)
T KOG4318|consen 74 DAENPK------------------EPLADTYTNLLKA------YRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWF 128 (1088)
T ss_pred cccCCC------------------CCchhHHHHHHHH------HHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHH
Confidence 322222 1234579999999 999998755 222222 222 11
Q ss_pred ---------CCCCeeeec-----cccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcC-CHHHHHHHHHHHH
Q 002846 315 ---------QFSNGHMKL-----NSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKY-AFQRGFEIYEKMC 379 (874)
Q Consensus 315 ---------i~Pd~~ty~-----~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g-~~~~A~~lf~~M~ 379 (874)
..||..+-. .|.++.++.++..+ |...-+ +...--+-.+- ......++.+ |.
T Consensus 129 l~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~-Pvsa~~-----------~p~~vfLrqnv~~ntpvekLl~-~c 195 (1088)
T KOG4318|consen 129 LMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKV-PVSAWN-----------APFQVFLRQNVVDNTPVEKLLN-MC 195 (1088)
T ss_pred HhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhC-Cccccc-----------chHHHHHHHhccCCchHHHHHH-HH
Confidence 222222221 55566666665554 221111 11111111111 1122333333 33
Q ss_pred HCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH
Q 002846 380 LDEV-PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP 458 (874)
Q Consensus 380 ~~Gv-~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ 458 (874)
+.+. .|+..+|.+++++...+|+++.|..++.+|++.|+..+..-|-+||-+ .++..-+..+...|.+.||.|+..
T Consensus 196 ksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~se 272 (1088)
T KOG4318|consen 196 KSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSE 272 (1088)
T ss_pred HHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcc
Confidence 3333 499999999999999999999999999999999999999989999988 888999999999999999999999
Q ss_pred HHHHHHHHHHhcCC
Q 002846 459 ELEALLRVSVEAGK 472 (874)
Q Consensus 459 ty~~LI~~~~~~G~ 472 (874)
|+.--+-.+..+|.
T Consensus 273 T~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 273 TQADYVIPQLSNGQ 286 (1088)
T ss_pred hhHHHHHhhhcchh
Confidence 99877767666554
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.93 E-value=1.1e-06 Score=107.16 Aligned_cols=302 Identities=11% Similarity=-0.032 Sum_probs=212.6
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 002846 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG-QYHYNVLLYLCS 237 (874)
Q Consensus 159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd-~~tyn~LL~a~~ 237 (874)
.....++..+|+.+++.....-.. .| ..+..+..++...|++++|+..|+++... .|+ ...+..+-.++.
T Consensus 51 ~~~~~g~~~~A~~l~~~~l~~~p~-----~~--~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 51 ACLRKDETDVGLTLLSDRVLTAKN-----GR--DLLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVLLVASVLL 121 (656)
T ss_pred HHHhcCCcchhHHHhHHHHHhCCC-----ch--hHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHH
Confidence 445778999999999988543221 12 34444446666799999999999999864 344 344555555556
Q ss_pred hcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCC
Q 002846 238 SAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS 317 (874)
Q Consensus 238 ~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~P 317 (874)
..|+.++|...+. +.... .-.+...|..+... +...|++++|...+..+....-.+
T Consensus 122 ----------~~g~~~~Ai~~l~-------~Al~l-~P~~~~a~~~la~~------l~~~g~~~eA~~~~~~~~~~~P~~ 177 (656)
T PRK15174 122 ----------KSKQYATVADLAE-------QAWLA-FSGNSQIFALHLRT------LVLMDKELQAISLARTQAQEVPPR 177 (656)
T ss_pred ----------HcCCHHHHHHHHH-------HHHHh-CCCcHHHHHHHHHH------HHHCCChHHHHHHHHHHHHhCCCC
Confidence 6789999999985 33321 11245567788888 899999999999998886653222
Q ss_pred Ceeeec------cccHHHHHHhhhcC-C--C--CcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 002846 318 NGHMKL------NSQLLDGRSNLERG-P--D--DQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN 386 (874)
Q Consensus 318 d~~ty~------~g~~~eA~~l~~~m-~--p--d~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd 386 (874)
....+. .|+..+|...++.+ . | +...+ ..+...+.+.|+.++|...|+...... +-+
T Consensus 178 ~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~-----------~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~ 245 (656)
T PRK15174 178 GDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESA-----------GLAVDTLCAVGKYQEAIQTGESALARG-LDG 245 (656)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHH-----------HHHHHHHHHCCCHHHHHHHHHHHHhcC-CCC
Confidence 211111 78888998888876 1 1 11222 344567888999999999999988764 346
Q ss_pred HHHHHHHHHHHHhcCChhH----HHHHHHHHHHCCCCCC-cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHH
Q 002846 387 EASLTAVGRMAMSMGDGDM----AFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPEL 460 (874)
Q Consensus 387 ~~tyn~LI~~~~~~G~~d~----A~~l~~~M~~~Gi~Pd-~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd-~~ty 460 (874)
...+..+-..+...|++++ |...|++.... .|+ ...+..+-..+.+.|+.++|...++...... |+ ...+
T Consensus 246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~--P~~~~a~ 321 (656)
T PRK15174 246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH--PDLPYVR 321 (656)
T ss_pred HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHH
Confidence 7788889999999999986 78899888765 344 5678888888999999999999999988753 54 4556
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhcCCCCChhHHHH--HHHHHhcchHHHhh
Q 002846 461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV--IAKWFNSKEAARLG 511 (874)
Q Consensus 461 ~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~T~~~--I~~~~~s~~~~~a~ 511 (874)
..|-..+.+.|++++|...|.++... .|....+.. ...+...+...+|.
T Consensus 322 ~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~ 372 (656)
T PRK15174 322 AMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAE 372 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHH
Confidence 67788889999999999999998876 444322222 23344455544443
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.81 E-value=2e-06 Score=104.82 Aligned_cols=276 Identities=7% Similarity=-0.048 Sum_probs=206.1
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhc
Q 002846 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG-QYHYNVLLYLCSSA 239 (874)
Q Consensus 161 ~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd-~~tyn~LL~a~~~~ 239 (874)
...++.++|...|+.+.... |+ +...|..+-..+.+.|++++|+..|+++... .|+ ...+..+..++.
T Consensus 87 l~~g~~~~A~~~l~~~l~~~--P~-----~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~-- 155 (656)
T PRK15174 87 LASSQPDAVLQVVNKLLAVN--VC-----QPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLV-- 155 (656)
T ss_pred hhcCCHHHHHHHHHHHHHhC--CC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHH--
Confidence 35899999999999995431 21 2356777788899999999999999999864 344 566777777887
Q ss_pred ccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCe
Q 002846 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG 319 (874)
Q Consensus 240 ~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~ 319 (874)
..|+.++|...+. .+... .-.+...+..+ .. +...|++++|..+++.+....-.++.
T Consensus 156 --------~~g~~~eA~~~~~-------~~~~~-~P~~~~a~~~~-~~------l~~~g~~~eA~~~~~~~l~~~~~~~~ 212 (656)
T PRK15174 156 --------LMDKELQAISLAR-------TQAQE-VPPRGDMIATC-LS------FLNKSRLPEDHDLARALLPFFALERQ 212 (656)
T ss_pred --------HCCChHHHHHHHH-------HHHHh-CCCCHHHHHHH-HH------HHHcCCHHHHHHHHHHHHhcCCCcch
Confidence 7899999999884 33322 11222223222 23 67789999999999998776422222
Q ss_pred eeec--------cccHHHHHHhhhcC---CCCc-ccccccccccCCccchHHHHHHhcCCHHH----HHHHHHHHHHCCC
Q 002846 320 HMKL--------NSQLLDGRSNLERG---PDDQ-SRKKDWSIDNQDADEIRLSEDAKKYAFQR----GFEIYEKMCLDEV 383 (874)
Q Consensus 320 ~ty~--------~g~~~eA~~l~~~m---~pd~-~ty~~w~i~~~~~~n~lI~~~~k~g~~~~----A~~lf~~M~~~Gv 383 (874)
..+. .|+.++|...+.+. .|+. ..+ ..+-..+...|+.++ |...|+......
T Consensus 213 ~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~-----------~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~- 280 (656)
T PRK15174 213 ESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALR-----------RSLGLAYYQSGRSREAKLQAAEHWRHALQFN- 280 (656)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHH-----------HHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-
Confidence 2211 68889999998887 4443 333 566778888999886 899999988753
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHH-
Q 002846 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELE- 461 (874)
Q Consensus 384 ~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd-~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~- 461 (874)
+-+..++..+...+...|++++|...+++.... .|+ ...+..+-..|.+.|++++|...|+.+.... |+...+.
T Consensus 281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~ 356 (656)
T PRK15174 281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNR 356 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHH
Confidence 335778999999999999999999999998875 455 3456667788999999999999999998754 6654433
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 462 ALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 462 ~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
.+..++...|+.++|...|++..+.
T Consensus 357 ~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3456788999999999999998776
No 19
>PF12854 PPR_1: PPR repeat
Probab=98.53 E-value=6.5e-08 Score=70.61 Aligned_cols=31 Identities=16% Similarity=0.172 Sum_probs=12.1
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 002846 383 VPMNEASLTAVGRMAMSMGDGDMAFDMVKRM 413 (874)
Q Consensus 383 v~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M 413 (874)
+.||.+|||+||++||+.|++++|.++|++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3333333333333333333333333333333
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.53 E-value=3.4e-05 Score=93.65 Aligned_cols=254 Identities=11% Similarity=0.049 Sum_probs=185.4
Q ss_pred CChhHHHHHHHHHhhCCCCCCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhccc
Q 002846 164 TNDSGQYKVRGITDEKGSKKSKKDRS-EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG-QYHYNVLLYLCSSAAV 241 (874)
Q Consensus 164 ~~~~~A~~vf~eM~~~g~k~~~g~~P-d~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd-~~tyn~LL~a~~~~~~ 241 (874)
+..++|.+.|+.....+. ..| +...|+.+-..+...|++++|+..|++.... .|+ ...|..+-..+.
T Consensus 308 ~~y~~A~~~~~~al~~~~-----~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~---- 376 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGK-----LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNL---- 376 (615)
T ss_pred hhHHHHHHHHHHHHhcCC-----CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHH----
Confidence 467789999998865441 223 3356777777888999999999999998864 454 446666666666
Q ss_pred CCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeee
Q 002846 242 GVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHM 321 (874)
Q Consensus 242 ~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~t 321 (874)
..|+.++|...|. +..+. .-.+...|..+-.. +...|++++|...|++..... |+...
T Consensus 377 ------~~g~~~eA~~~~~-------~al~~-~p~~~~~~~~lg~~------~~~~g~~~~A~~~~~kal~l~--P~~~~ 434 (615)
T TIGR00990 377 ------ELGDPDKAEEDFD-------KALKL-NSEDPDIYYHRAQL------HFIKGEFAQAGKDYQKSIDLD--PDFIF 434 (615)
T ss_pred ------HCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHcC--ccCHH
Confidence 6789999999995 33332 22245567777667 888999999999998877652 33211
Q ss_pred eccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 002846 322 KLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG 401 (874)
Q Consensus 322 y~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G 401 (874)
.| ..+-..+.+.|++++|+..|++..... +-+...|+.+-..+...|
T Consensus 435 ---------------------~~-----------~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g 481 (615)
T TIGR00990 435 ---------------------SH-----------IQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQN 481 (615)
T ss_pred ---------------------HH-----------HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcc
Confidence 11 445567788999999999999987642 345788999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCc--cc------HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCc
Q 002846 402 DGDMAFDMVKRMKSLGINPRL--RS------YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG 473 (874)
Q Consensus 402 ~~d~A~~l~~~M~~~Gi~Pd~--~t------Yn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~ 473 (874)
++++|...|++..... |+. .. ++..+..+-..|++++|.++++...... .-+...+..|...+.+.|++
T Consensus 482 ~~~~A~~~~~~Al~l~--p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~ 558 (615)
T TIGR00990 482 KFDEAIEKFDTAIELE--KETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDV 558 (615)
T ss_pred CHHHHHHHHHHHHhcC--CccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCH
Confidence 9999999999877652 321 11 1222233444699999999999987654 22345688899999999999
Q ss_pred hHHHHHHHHHHhc
Q 002846 474 DRVYYLLHKLRTS 486 (874)
Q Consensus 474 d~A~~ll~~M~~~ 486 (874)
++|..+|++..+.
T Consensus 559 ~eAi~~~e~A~~l 571 (615)
T TIGR00990 559 DEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998765
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.53 E-value=4.6e-05 Score=92.50 Aligned_cols=292 Identities=11% Similarity=0.010 Sum_probs=193.1
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 002846 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG-QYHYNVLLYLCS 237 (874)
Q Consensus 159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd-~~tyn~LL~a~~ 237 (874)
.+-+.++.++|.+.|+..+. ..|+...|..+-.+|.+.|++++|+..+....+. .|+ ...|..+=.++.
T Consensus 136 ~~~~~~~~~~Ai~~y~~al~--------~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 136 KAYRNKDFNKAIKLYSKAIE--------CKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHh--------cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHH
Confidence 34577899999999999854 3355578888888999999999999999998864 343 456666666676
Q ss_pred hcccCCCcccCCCCHHHHHHHHhhcccCc-----------------------hhhhhcCCCCc--hhh--hHhh------
Q 002846 238 SAAVGVVKPAKSGSGMRTLDTFEVSTMNS-----------------------TELGDSRDMDN--NGQ--LDYG------ 284 (874)
Q Consensus 238 ~~~~~~~~~~k~G~~~~A~~vf~v~~~~s-----------------------~em~~~~gi~d--~vt--yn~L------ 284 (874)
..|++++|..-|....... .+..+. ...+ ..+ .+.+
T Consensus 206 ----------~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~ 274 (615)
T TIGR00990 206 ----------GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILET-KPENLPSVTFVGNYLQSFRPK 274 (615)
T ss_pred ----------HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCHHHHHHHHHHccCC
Confidence 6788888876542110000 000000 0000 000 0000
Q ss_pred ----------------hcC-cc---cChhhhhcCChHHHHHHHHHHHHcC-CCCCee-eec--------cccHHHHHHhh
Q 002846 285 ----------------SSP-MI---DKLESNSSYRFDDLDSTFNEKENLG-QFSNGH-MKL--------NSQLLDGRSNL 334 (874)
Q Consensus 285 ----------------I~~-~~---~~~~~~~~g~~e~A~~lf~eM~~~G-i~Pd~~-ty~--------~g~~~eA~~l~ 334 (874)
..+ .. ...+....+.+++|.+.|++....+ ..|+.. .|. .|+.++|...|
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~ 354 (615)
T TIGR00990 275 PRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADL 354 (615)
T ss_pred cchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 000 00 0000112357888999999888765 334321 222 67888888888
Q ss_pred hcC---CCCc-ccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 002846 335 ERG---PDDQ-SRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMV 410 (874)
Q Consensus 335 ~~m---~pd~-~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~ 410 (874)
++. .|+. ..| ..+-..+...|++++|...|++..... +-+..+|..+...+...|++++|...|
T Consensus 355 ~kal~l~P~~~~~~-----------~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 422 (615)
T TIGR00990 355 SKSIELDPRVTQSY-----------IKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDY 422 (615)
T ss_pred HHHHHcCCCcHHHH-----------HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 876 4543 244 555566778888899999888877653 335678888888888889999999988
Q ss_pred HHHHHCCCCCC-cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 411 KRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 411 ~~M~~~Gi~Pd-~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
++..+. .|+ ...|..+-..+.+.|+.++|...|+...... .-+...|+.+-..+...|++++|...|++....
T Consensus 423 ~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 423 QKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred HHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 887765 343 4556666677778889999999888877632 224667788888888888999999888887765
No 22
>PF12854 PPR_1: PPR repeat
Probab=98.52 E-value=1e-07 Score=69.55 Aligned_cols=34 Identities=26% Similarity=0.565 Sum_probs=32.4
Q ss_pred CCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHH
Q 002846 416 LGINPRLRSYGPALSVFCNNGDVDKACSVEEHML 449 (874)
Q Consensus 416 ~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~ 449 (874)
+|+.||..|||+||++||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4899999999999999999999999999999994
No 23
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.49 E-value=1.8e-06 Score=101.99 Aligned_cols=219 Identities=14% Similarity=0.069 Sum_probs=151.7
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCC-chhhhHhhhcCccc
Q 002846 212 RLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMID 290 (874)
Q Consensus 212 ~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~-d~vtyn~LI~~~~~ 290 (874)
.++-.|...|+.||.+||.+||.-|| ..|+++.|- +|. -|..+ ..+ +-..++.++.+
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc----------~~gdieaat-if~-------fm~~k-sLpv~e~vf~~lv~s--- 68 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYC----------TKGDIEAAT-IFP-------FMEIK-SLPVREGVFRGLVAS--- 68 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHc----------ccCCCcccc-chh-------hhhcc-cccccchhHHHHHhc---
Confidence 46778889999999999999999999 778888777 774 23332 444 66779999999
Q ss_pred ChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHH
Q 002846 291 KLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQR 370 (874)
Q Consensus 291 ~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~ 370 (874)
....++.+.+. .|..-|| ..|+.+|...|++..
T Consensus 69 ---h~~And~Enpk-----------ep~aDty---------------------------------t~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 69 ---HKEANDAENPK-----------EPLADTY---------------------------------TNLLKAYRIHGDLIL 101 (1088)
T ss_pred ---ccccccccCCC-----------CCchhHH---------------------------------HHHHHHHHhccchHH
Confidence 88888887776 4555555 667777777766543
Q ss_pred HHHHHHH-HHH-------CCC-----------------CCCHHHHHHHHHHHHhcCChhHHHH-----------------
Q 002846 371 GFEIYEK-MCL-------DEV-----------------PMNEASLTAVGRMAMSMGDGDMAFD----------------- 408 (874)
Q Consensus 371 A~~lf~~-M~~-------~Gv-----------------~Pd~~tyn~LI~~~~~~G~~d~A~~----------------- 408 (874)
++..++ |.. .|+ -||..+ +|....-.|-++.+.+
T Consensus 102 -fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~eglwaqllkll~~~Pvsa~~~p~~vf 177 (1088)
T KOG4318|consen 102 -FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVF 177 (1088)
T ss_pred -HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHHHHHHHHHHhhCCcccccchHHHH
Confidence 222222 111 111 122211 1222222222222222
Q ss_pred -------------HHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchH
Q 002846 409 -------------MVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDR 475 (874)
Q Consensus 409 -------------l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~ 475 (874)
++...+...-.|+..+|..+++.-..+|+++.|..++.+|.++|+..+..-|-.||-+ .+...-
T Consensus 178 Lrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~ 254 (1088)
T KOG4318|consen 178 LRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQV 254 (1088)
T ss_pred HHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchH
Confidence 2222222211599999999999999999999999999999999999999988888876 788889
Q ss_pred HHHHHHHHHhcCCCCChhHHHH-HHHHHhcch
Q 002846 476 VYYLLHKLRTSVRKVSPSTADV-IAKWFNSKE 506 (874)
Q Consensus 476 A~~ll~~M~~~~~~~sp~T~~~-I~~~~~s~~ 506 (874)
+..++..|+..++.|..+|+.. ++..+.++.
T Consensus 255 ~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 255 FEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 9999999999966666668766 777777443
No 24
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.48 E-value=6.2e-07 Score=97.62 Aligned_cols=254 Identities=17% Similarity=0.121 Sum_probs=103.5
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 002846 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVEL-DMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (874)
Q Consensus 161 ~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI-~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~ 239 (874)
-+.++.++|+++++.-.... .+|+-..|-.++ ..+-..++.+.|+..|+++...+-. +...|..++.. .
T Consensus 19 ~~~~~~~~Al~~L~~~~~~~------~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~-- 88 (280)
T PF13429_consen 19 YQRGDYEKALEVLKKAAQKI------APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-L-- 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccc------cccccccccccccccccccccccccccccccccccccc-ccccccccccc-c--
Confidence 36688899999996542211 123324444444 4555678999999999999876533 45566666666 4
Q ss_pred ccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCC-CCC
Q 002846 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQ-FSN 318 (874)
Q Consensus 240 ~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi-~Pd 318 (874)
..++.++|..++. +.-+. ..+...+..++.. +-+.++++++.+++++.....- .++
T Consensus 89 --------~~~~~~~A~~~~~-------~~~~~--~~~~~~l~~~l~~------~~~~~~~~~~~~~l~~~~~~~~~~~~ 145 (280)
T PF13429_consen 89 --------QDGDPEEALKLAE-------KAYER--DGDPRYLLSALQL------YYRLGDYDEAEELLEKLEELPAAPDS 145 (280)
T ss_dssp ----------------------------------------------H-------HHHTT-HHHHHHHHHHHHH-T---T-
T ss_pred --------ccccccccccccc-------ccccc--ccccchhhHHHHH------HHHHhHHHHHHHHHHHHHhccCCCCC
Confidence 5577888888773 22111 1234446667777 8888999999999998765431 122
Q ss_pred eeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 002846 319 GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMA 397 (874)
Q Consensus 319 ~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~P-d~~tyn~LI~~~ 397 (874)
...| ..+-..+.+.|+.++|.++|++..+.. | |....+.++..+
T Consensus 146 ~~~~---------------------------------~~~a~~~~~~G~~~~A~~~~~~al~~~--P~~~~~~~~l~~~l 190 (280)
T PF13429_consen 146 ARFW---------------------------------LALAEIYEQLGDPDKALRDYRKALELD--PDDPDARNALAWLL 190 (280)
T ss_dssp HHHH---------------------------------HHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH
T ss_pred HHHH---------------------------------HHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHH
Confidence 2222 555567788999999999999988763 5 577888999999
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCchHH
Q 002846 398 MSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRV 476 (874)
Q Consensus 398 ~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~P-d~~ty~~LI~~~~~~G~~d~A 476 (874)
...|+.+++.++++...+.. ..|...+..+-.+|...|+.++|...|+...... | |......+-+++...|+.++|
T Consensus 191 i~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~--p~d~~~~~~~a~~l~~~g~~~~A 267 (280)
T PF13429_consen 191 IDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN--PDDPLWLLAYADALEQAGRKDEA 267 (280)
T ss_dssp CTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHT--------
T ss_pred HHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc--ccccccccccccccccccccccc
Confidence 99999999999998887663 4556667788888999999999999999987743 5 677778888999999999999
Q ss_pred HHHHHHHHh
Q 002846 477 YYLLHKLRT 485 (874)
Q Consensus 477 ~~ll~~M~~ 485 (874)
.++..+.-.
T Consensus 268 ~~~~~~~~~ 276 (280)
T PF13429_consen 268 LRLRRQALR 276 (280)
T ss_dssp ---------
T ss_pred ccccccccc
Confidence 998876543
No 25
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.43 E-value=7.9e-05 Score=85.61 Aligned_cols=121 Identities=7% Similarity=-0.002 Sum_probs=84.8
Q ss_pred cCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH--HHHHhcc
Q 002846 163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLL--YLCSSAA 240 (874)
Q Consensus 163 ~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL--~a~~~~~ 240 (874)
.|+...|.+....-... ...|. ..|-..-.+..+.|+.+.|...|.++.+ ..|+...+..++ ..+.
T Consensus 97 eGd~~~A~k~l~~~~~~------~~~p~-l~~llaA~aA~~~g~~~~A~~~l~~A~~--~~~~~~~~~~l~~a~l~l--- 164 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH------AEQPV-VNYLLAAEAAQQRGDEARANQHLERAAE--LADNDQLPVEITRVRIQL--- 164 (398)
T ss_pred CCCHHHHHHHHHHHHhc------ccchH-HHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHH---
Confidence 48888999888765221 11222 3343334455789999999999999975 356655444222 2334
Q ss_pred cCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCC
Q 002846 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQF 316 (874)
Q Consensus 241 ~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~ 316 (874)
..|+.+.|...++ +..+. .-.+...+..+... |.+.|++++|.+++..+.+.+..
T Consensus 165 -------~~g~~~~Al~~l~-------~~~~~-~P~~~~al~ll~~~------~~~~gdw~~a~~~l~~l~k~~~~ 219 (398)
T PRK10747 165 -------ARNENHAARHGVD-------KLLEV-APRHPEVLRLAEQA------YIRTGAWSSLLDILPSMAKAHVG 219 (398)
T ss_pred -------HCCCHHHHHHHHH-------HHHhc-CCCCHHHHHHHHHH------HHHHHhHHHHHHHHHHHHHcCCC
Confidence 6799999999995 44443 32255667888888 99999999999999999998755
No 26
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.42 E-value=0.00014 Score=90.58 Aligned_cols=282 Identities=7% Similarity=-0.023 Sum_probs=184.6
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 002846 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (874)
Q Consensus 159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (874)
.....++..+|..+++..... .+.+...+..+...+...|+.++|+..+++..+. .|+...+..+-.++.
T Consensus 58 ~~~~~g~~~~A~~~~~~al~~-------~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la~~l~- 127 (765)
T PRK10049 58 AYRNLKQWQNSLTLWQKALSL-------EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG--APDKANLLALAYVYK- 127 (765)
T ss_pred HHHHcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH-
Confidence 455778888999999987442 1123355677778888999999999999998865 333322666655666
Q ss_pred cccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCC
Q 002846 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (874)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd 318 (874)
..|+.++|+..+. +..+. .-.+...+..+... +...+..+.|++.++.... .|+
T Consensus 128 ---------~~g~~~~Al~~l~-------~al~~-~P~~~~~~~~la~~------l~~~~~~e~Al~~l~~~~~---~p~ 181 (765)
T PRK10049 128 ---------RAGRHWDELRAMT-------QALPR-APQTQQYPTEYVQA------LRNNRLSAPALGAIDDANL---TPA 181 (765)
T ss_pred ---------HCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHCCChHHHHHHHHhCCC---CHH
Confidence 6788999999985 34332 22233344445555 6677888888877764432 222
Q ss_pred ee--------------ee----c-cccH---HHHHHhhhcC------CCCcc-cccccccccCCccchHHHHHHhcCCHH
Q 002846 319 GH--------------MK----L-NSQL---LDGRSNLERG------PDDQS-RKKDWSIDNQDADEIRLSEDAKKYAFQ 369 (874)
Q Consensus 319 ~~--------------ty----~-~g~~---~eA~~l~~~m------~pd~~-ty~~w~i~~~~~~n~lI~~~~k~g~~~ 369 (874)
.. .+ . .++. ++|+..++.+ .|+.. .+--+ ....+..+...|+++
T Consensus 182 ~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a-------~~d~l~~Ll~~g~~~ 254 (765)
T PRK10049 182 EKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRA-------RIDRLGALLARDRYK 254 (765)
T ss_pred HHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHH-------HHHHHHHHHHhhhHH
Confidence 10 00 0 1223 5566666655 12211 11000 000133456779999
Q ss_pred HHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-----cccHHHHHHHHHhCCChhHHHH
Q 002846 370 RGFEIYEKMCLDEVP-MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-----LRSYGPALSVFCNNGDVDKACS 443 (874)
Q Consensus 370 ~A~~lf~~M~~~Gv~-Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd-----~~tYn~LI~a~~k~G~~~~A~~ 443 (874)
+|...|+.+...+-. |+..- -.+...|...|++++|..+|+++.... |. ...+..|..++...|+.++|.+
T Consensus 255 eA~~~~~~ll~~~~~~P~~a~-~~la~~yl~~g~~e~A~~~l~~~l~~~--p~~~~~~~~~~~~L~~a~~~~g~~~eA~~ 331 (765)
T PRK10049 255 DVISEYQRLKAEGQIIPPWAQ-RWVASAYLKLHQPEKAQSILTELFYHP--ETIADLSDEELADLFYSLLESENYPGALT 331 (765)
T ss_pred HHHHHHHHhhccCCCCCHHHH-HHHHHHHHhcCCcHHHHHHHHHHhhcC--CCCCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 999999999988632 44322 225778999999999999999987642 32 2345556778899999999999
Q ss_pred HHHHHHHcC-----------CCCCH---HHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 444 VEEHMLEHG-----------VYPEE---PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 444 l~~eM~~~G-----------v~Pd~---~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
+++.+.... -.|+. ..+..+...+...|+.++|..+|+++...
T Consensus 332 ~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~ 388 (765)
T PRK10049 332 VTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN 388 (765)
T ss_pred HHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999998752 12332 24456677788999999999999999876
No 27
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.40 E-value=0.00014 Score=94.45 Aligned_cols=296 Identities=10% Similarity=-0.021 Sum_probs=192.6
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 002846 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (874)
Q Consensus 159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (874)
...+.++.++|...|++..... | .+...+..+-..+...|++++|++.|+++.+.. +.+...+..+...+..
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~--P-----~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~ 431 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVD--N-----TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQ 431 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--C-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3457789999999999986531 1 234667778889999999999999999998642 1223344434333321
Q ss_pred cccC--------------------------------CCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhc
Q 002846 239 AAVG--------------------------------VVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSS 286 (874)
Q Consensus 239 ~~~~--------------------------------~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~ 286 (874)
.... +..+...|+.++|...|. +.... .-.+...+..+-.
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~-------~Al~~-~P~~~~~~~~LA~ 503 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQR-------QRLAL-DPGSVWLTYRLAQ 503 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHH
Confidence 0000 000114577777777774 33221 1223444555556
Q ss_pred CcccChhhhhcCChHHHHHHHHHHHHcCCCCCee--eec-------cccHHHHHHhhhcCCCCccccccccccc---CCc
Q 002846 287 PMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH--MKL-------NSQLLDGRSNLERGPDDQSRKKDWSIDN---QDA 354 (874)
Q Consensus 287 ~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~--ty~-------~g~~~eA~~l~~~m~pd~~ty~~w~i~~---~~~ 354 (874)
. |.+.|++++|..+|++.... .|+.. .|. .++..+|...++.+.+...+-..=.+.. ...
T Consensus 504 ~------~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~ 575 (1157)
T PRK11447 504 D------LRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQ 575 (1157)
T ss_pred H------HHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhH
Confidence 6 88888999999988887764 24322 111 5777788888777622110000000000 000
Q ss_pred cchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 002846 355 DEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN 434 (874)
Q Consensus 355 ~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k 434 (874)
.-.+...+...|+.++|..+++. .+.+...+..|...+.+.|+.++|...|++..+.. +.+...+..+...|..
T Consensus 576 ~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~ 649 (1157)
T PRK11447 576 VLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIA 649 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 01234567788999999998872 24456677888899999999999999999888762 2346677788889999
Q ss_pred CCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 435 NGDVDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 435 ~G~~~~A~~l~~eM~~~Gv~Pd-~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
.|+.++|.++++...+. .|+ ...+..+-.++...|+.++|..+++++...
T Consensus 650 ~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 650 QGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred CCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 99999999999987653 343 445566777788899999999999998775
No 28
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.36 E-value=0.00012 Score=95.12 Aligned_cols=247 Identities=12% Similarity=0.064 Sum_probs=175.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCc
Q 002846 199 DMCSKRGDVMGAIRLYDKAQREGIKLG-QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDN 277 (874)
Q Consensus 199 ~a~~k~G~~~~Al~lf~~M~~~Gi~pd-~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d 277 (874)
..+...|++++|++.|++..+. .|+ ...+..+-..|. +.|+.++|...+. +.... .-.+
T Consensus 469 ~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~----------~~G~~~~A~~~l~-------~al~~-~P~~ 528 (1157)
T PRK11447 469 EALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLR----------QAGQRSQADALMR-------RLAQQ-KPND 528 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH----------HcCCHHHHHHHHH-------HHHHc-CCCC
Confidence 3455789999999999998864 343 455566666677 7899999999995 44332 1112
Q ss_pred hhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeee----------------ec-cccHHHHHHhhhcCCCC
Q 002846 278 NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHM----------------KL-NSQLLDGRSNLERGPDD 340 (874)
Q Consensus 278 ~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~t----------------y~-~g~~~eA~~l~~~m~pd 340 (874)
...+-.+.-. +...++.++|...++.+......++... +. .|+.++|..+++.-.++
T Consensus 529 ~~~~~a~al~------l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~ 602 (1157)
T PRK11447 529 PEQVYAYGLY------LSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPS 602 (1157)
T ss_pred HHHHHHHHHH------HHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 2222222122 5567889999988887543322222111 11 67888899888854444
Q ss_pred cccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 002846 341 QSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP 420 (874)
Q Consensus 341 ~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~P 420 (874)
...+ ..+-..+.+.|+.++|.+.|++..... +-+...+..+...+...|+.++|.+.++...+. .|
T Consensus 603 ~~~~-----------~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p 668 (1157)
T PRK11447 603 TRID-----------LTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--AN 668 (1157)
T ss_pred chHH-----------HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CC
Confidence 4444 567788889999999999999988764 346889999999999999999999999987654 44
Q ss_pred C-cccHHHHHHHHHhCCChhHHHHHHHHHHHcCC--CC---CHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 002846 421 R-LRSYGPALSVFCNNGDVDKACSVEEHMLEHGV--YP---EEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (874)
Q Consensus 421 d-~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv--~P---d~~ty~~LI~~~~~~G~~d~A~~ll~~M~~ 485 (874)
+ ...+..+-..+...|+.++|.++++.+....- .| +...+..+-..+...|+.++|..+++....
T Consensus 669 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 669 DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4 34455566778899999999999999886532 12 224555566778899999999999988754
No 29
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.34 E-value=0.0001 Score=75.59 Aligned_cols=200 Identities=17% Similarity=0.087 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhh
Q 002846 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG 270 (874)
Q Consensus 191 ~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~ 270 (874)
...+..+...+...|++++|+..|+++.+.. +-+...+..+-..+. ..|+.++|...+. +..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~----------~~~~~~~A~~~~~-------~al 92 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQ----------QLGELEKAEDSFR-------RAL 92 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH----------HcCCHHHHHHHHH-------HHH
Confidence 3567777788889999999999999887543 223445555555555 5566677766663 111
Q ss_pred hcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccc
Q 002846 271 DSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID 350 (874)
Q Consensus 271 ~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~ 350 (874)
.. .-.+...+..
T Consensus 93 ~~-~~~~~~~~~~------------------------------------------------------------------- 104 (234)
T TIGR02521 93 TL-NPNNGDVLNN------------------------------------------------------------------- 104 (234)
T ss_pred hh-CCCCHHHHHH-------------------------------------------------------------------
Confidence 11 1111122222
Q ss_pred cCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHH
Q 002846 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVP-MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429 (874)
Q Consensus 351 ~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~-Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI 429 (874)
+...+...|++++|.+.|+........ .....+..+...+...|++++|...+.+..... ..+...+..+.
T Consensus 105 -------~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la 176 (234)
T TIGR02521 105 -------YGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELA 176 (234)
T ss_pred -------HHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHH
Confidence 333344455555555555555443211 123344555556666666666666666655432 11234455555
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 002846 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (874)
Q Consensus 430 ~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~ 485 (874)
..+...|+.++|...+++.... ...+...+..+...+...|+.++|..+.+.+..
T Consensus 177 ~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 177 ELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 6666666666666666666554 233445555555666666666666666665544
No 30
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.31 E-value=9.7e-05 Score=75.79 Aligned_cols=178 Identities=12% Similarity=0.037 Sum_probs=133.2
Q ss_pred hhhcCChHHHHHHHHHHHHcCCCCCe-eeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHH
Q 002846 294 SNSSYRFDDLDSTFNEKENLGQFSNG-HMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGF 372 (874)
Q Consensus 294 ~~~~g~~e~A~~lf~eM~~~Gi~Pd~-~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~ 372 (874)
+...|++++|...|++..... |+. ..+ ..+...+...|++++|.
T Consensus 41 ~~~~~~~~~A~~~~~~~l~~~--p~~~~~~---------------------------------~~la~~~~~~~~~~~A~ 85 (234)
T TIGR02521 41 YLEQGDLEVAKENLDKALEHD--PDDYLAY---------------------------------LALALYYQQLGELEKAE 85 (234)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--cccHHHH---------------------------------HHHHHHHHHcCCHHHHH
Confidence 778899999999999887653 432 222 55667788899999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CcccHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 002846 373 EIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (874)
Q Consensus 373 ~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~P-d~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~ 451 (874)
+.|++..... +.+...+..+...+...|++++|...+++.......| ....+..+-..+...|+.++|...+++....
T Consensus 86 ~~~~~al~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 164 (234)
T TIGR02521 86 DSFRRALTLN-PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI 164 (234)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999888764 3456788889999999999999999999988753222 3345666777888999999999999998875
Q ss_pred CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCChhHHHH-HHHHHhcchHHH
Q 002846 452 GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKWFNSKEAAR 509 (874)
Q Consensus 452 Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~T~~~-I~~~~~s~~~~~ 509 (874)
. ..+...+..+...+...|+.++|..++++.... ....+..+.. ..-+...+...+
T Consensus 165 ~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 221 (234)
T TIGR02521 165 D-PQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAA 221 (234)
T ss_pred C-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHH
Confidence 3 224567888889999999999999999998876 2223344333 333334444333
No 31
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.28 E-value=0.00021 Score=82.38 Aligned_cols=123 Identities=12% Similarity=0.059 Sum_probs=85.4
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHH
Q 002846 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSE-QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQY--HYNVLLYLC 236 (874)
Q Consensus 160 ~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd-~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~--tyn~LL~a~ 236 (874)
....|+...|.+.+...... .|+ ...|-..-.+..+.|+.+.|...|.++.+.- |+.. ..-..-..+
T Consensus 94 a~~~g~~~~A~~~l~~~~~~--------~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~ 163 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADH--------AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRIL 163 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHH
Confidence 34568899999999876321 233 1333344466778899999999999987543 4432 222223344
Q ss_pred HhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCC
Q 002846 237 SSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQF 316 (874)
Q Consensus 237 ~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~ 316 (874)
. ..|+.+.|...+. ++.+. .-.+...+-.+... +...|++++|.+++..+.+.++.
T Consensus 164 l----------~~~~~~~Al~~l~-------~l~~~-~P~~~~~l~ll~~~------~~~~~d~~~a~~~l~~l~k~~~~ 219 (409)
T TIGR00540 164 L----------AQNELHAARHGVD-------KLLEM-APRHKEVLKLAEEA------YIRSGAWQALDDIIDNMAKAGLF 219 (409)
T ss_pred H----------HCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHHhhHHHHHHHHHHHHHcCCC
Confidence 4 5689999999995 55554 33355556777777 99999999999999999998754
No 32
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.23 E-value=5.5e-06 Score=90.16 Aligned_cols=228 Identities=16% Similarity=0.110 Sum_probs=101.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCC
Q 002846 197 ELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD 276 (874)
Q Consensus 197 LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~ 276 (874)
+=..+.+.|++++|++++++-....-.|+...|-.++..++. ..++.+.|...+. .+... +-.
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~---------~~~~~~~A~~ay~-------~l~~~-~~~ 76 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAW---------SLGDYDEAIEAYE-------KLLAS-DKA 76 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccc---------ccccccccccccc-------ccccc-ccc
Confidence 355677899999999999776554435666666665555542 4577888888884 33332 111
Q ss_pred chhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccc
Q 002846 277 NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADE 356 (874)
Q Consensus 277 d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n 356 (874)
+...|..++. +...+++++|.+++.+.-++. ++...+ .
T Consensus 77 ~~~~~~~l~~-------l~~~~~~~~A~~~~~~~~~~~--~~~~~l---------------------------------~ 114 (280)
T PF13429_consen 77 NPQDYERLIQ-------LLQDGDPEEALKLAEKAYERD--GDPRYL---------------------------------L 114 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccc-------ccccccccccccccccccccc--cccchh---------------------------------h
Confidence 2222333332 236678888887776654432 222222 6
Q ss_pred hHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHHh
Q 002846 357 IRLSEDAKKYAFQRGFEIYEKMCLD-EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCN 434 (874)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~-Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd-~~tYn~LI~a~~k 434 (874)
.++..+.+.++.+++.++++..... ....+...|..+...+.+.|+.++|..++++..+. .|+ ....+.++..+..
T Consensus 115 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~ 192 (280)
T PF13429_consen 115 SALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLID 192 (280)
T ss_dssp ---H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 6777888999999999999998754 34568889999999999999999999999998876 465 6678889999999
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 435 NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 435 ~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
.|+.+++.+++....... ..|...+..+-.+|...|+.++|..+|.+....
T Consensus 193 ~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 193 MGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL 243 (280)
T ss_dssp TCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc
Confidence 999999999998887754 455567788999999999999999999998886
No 33
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.17 E-value=0.00044 Score=74.51 Aligned_cols=293 Identities=14% Similarity=0.115 Sum_probs=163.2
Q ss_pred cccccchhhhhhhchHHHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHcC
Q 002846 143 IGIKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLR-VELDMCSKRGDVMGAIRLYDKAQREG 221 (874)
Q Consensus 143 ~~~~~~~~~~~~l~~~~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn-~LI~a~~k~G~~~~Al~lf~~M~~~G 221 (874)
+...-++.+|-.++ ...++|.++|-+|.. ..|..+--+ +|=+.|-+.|.+++|+++...+.++
T Consensus 35 lsr~Yv~GlNfLLs-------~Q~dKAvdlF~e~l~--------~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s- 98 (389)
T COG2956 35 LSRDYVKGLNFLLS-------NQPDKAVDLFLEMLQ--------EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES- 98 (389)
T ss_pred ccHHHHhHHHHHhh-------cCcchHHHHHHHHHh--------cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-
Confidence 34445666777776 567899999999954 123323333 3445677889999999999998854
Q ss_pred CCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChH
Q 002846 222 IKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFD 301 (874)
Q Consensus 222 i~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e 301 (874)
|| .|++-=+.+.-..+ ..|-..|-+++|.++|. .+++. +..-.-.---|+.- |-....|+
T Consensus 99 --pd-lT~~qr~lAl~qL~---~Dym~aGl~DRAE~~f~-------~L~de-~efa~~AlqqLl~I------YQ~treW~ 158 (389)
T COG2956 99 --PD-LTFEQRLLALQQLG---RDYMAAGLLDRAEDIFN-------QLVDE-GEFAEGALQQLLNI------YQATREWE 158 (389)
T ss_pred --CC-CchHHHHHHHHHHH---HHHHHhhhhhHHHHHHH-------HHhcc-hhhhHHHHHHHHHH------HHHhhHHH
Confidence 33 23333332222111 23457899999999995 44442 11111123334445 88888999
Q ss_pred HHHHHHHHHHHcCCCCCeeeec------------cccHHHHHHhhhcC---CCCcccccccccccCCccchHH-HHHHhc
Q 002846 302 DLDSTFNEKENLGQFSNGHMKL------------NSQLLDGRSNLERG---PDDQSRKKDWSIDNQDADEIRL-SEDAKK 365 (874)
Q Consensus 302 ~A~~lf~eM~~~Gi~Pd~~ty~------------~g~~~eA~~l~~~m---~pd~~ty~~w~i~~~~~~n~lI-~~~~k~ 365 (874)
+|.++-+++...|-.+..+-.. ..+.+.|..++.+. .|+.+-- ++++ .-....
T Consensus 159 KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRA-----------si~lG~v~~~~ 227 (389)
T COG2956 159 KAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRA-----------SIILGRVELAK 227 (389)
T ss_pred HHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceeh-----------hhhhhHHHHhc
Confidence 9999999888876444333222 44555566665554 3433332 3333 334456
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHH
Q 002846 366 YAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVE 445 (874)
Q Consensus 366 g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~ 445 (874)
|+...|.+.++...+.+..--.-+...|..+|.+.|++++....+..+.+....++. -..+-.--....-.+.|...+
T Consensus 228 g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~--~l~l~~lie~~~G~~~Aq~~l 305 (389)
T COG2956 228 GDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADA--ELMLADLIELQEGIDAAQAYL 305 (389)
T ss_pred cchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH--HHHHHHHHHHhhChHHHHHHH
Confidence 667777777766666554433445666666677777777766666666554322221 111111111122233444443
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHhc
Q 002846 446 EHMLEHGVYPEEPELEALLRVSVE---AGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 446 ~eM~~~Gv~Pd~~ty~~LI~~~~~---~G~~d~A~~ll~~M~~~ 486 (874)
.+-..+ .|+..-+..||+.-.. .|...+-..+++.|...
T Consensus 306 ~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 306 TRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred HHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 333332 3666666666665432 23334444455555443
No 34
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.16 E-value=0.0013 Score=82.01 Aligned_cols=296 Identities=9% Similarity=-0.050 Sum_probs=195.9
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHH
Q 002846 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ-YHYNVLLYLCS 237 (874)
Q Consensus 159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~-~tyn~LL~a~~ 237 (874)
.+.+.++.++|...+++.... .| .+.. +..+-..+...|+.++|+..|+++.+. .|+. ..+..+..++.
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~--~P-----~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~ 161 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSG--AP-----DKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALR 161 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CC-----CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 345789999999999998543 11 2334 777888899999999999999999875 3443 33334444443
Q ss_pred hcccCCCcccCCCCHHHHHHHHhhcccC---------------------------------------chhhhhcC-CCC-
Q 002846 238 SAAVGVVKPAKSGSGMRTLDTFEVSTMN---------------------------------------STELGDSR-DMD- 276 (874)
Q Consensus 238 ~~~~~~~~~~k~G~~~~A~~vf~v~~~~---------------------------------------s~em~~~~-gi~- 276 (874)
..|..+.|+..+...... -+.+.... .-+
T Consensus 162 ----------~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~ 231 (765)
T PRK10049 162 ----------NNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPD 231 (765)
T ss_pred ----------HCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCc
Confidence 233333333333200000 01122110 001
Q ss_pred chhhh----HhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCC-CCee------eec-cccHHHHHHhhhcC---CCCc
Q 002846 277 NNGQL----DYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQF-SNGH------MKL-NSQLLDGRSNLERG---PDDQ 341 (874)
Q Consensus 277 d~vty----n~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~-Pd~~------ty~-~g~~~eA~~l~~~m---~pd~ 341 (874)
+...+ ...+.. +...|++++|...|+.+...+-. |+.. .|. .++.++|...|++. .|..
T Consensus 232 ~~~~~~~a~~d~l~~------Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~ 305 (765)
T PRK10049 232 ATADYQRARIDRLGA------LLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETI 305 (765)
T ss_pred cchHHHHHHHHHHHH------HHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCC
Confidence 00010 000222 45678999999999999988632 4321 111 89999999999887 3322
Q ss_pred c-cccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCC-----------CCCC---HHHHHHHHHHHHhcCChhHH
Q 002846 342 S-RKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDE-----------VPMN---EASLTAVGRMAMSMGDGDMA 406 (874)
Q Consensus 342 ~-ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~G-----------v~Pd---~~tyn~LI~~~~~~G~~d~A 406 (874)
. .. ......+..++...|++++|.++++.+.... -.|+ ...+..+...+...|+.++|
T Consensus 306 ~~~~-------~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA 378 (765)
T PRK10049 306 ADLS-------DEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQA 378 (765)
T ss_pred CCCC-------hHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHH
Confidence 0 00 0001445557889999999999999998753 1234 23566788889999999999
Q ss_pred HHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 002846 407 FDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (874)
Q Consensus 407 ~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd-~~ty~~LI~~~~~~G~~d~A~~ll~~M~~ 485 (874)
.++++++... .+-+...+..+...+...|+.++|.++++...+.. |+ ...+-.+...+.+.|++++|..+++++.+
T Consensus 379 ~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 379 EMRARELAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999998765 33345677778888889999999999999988744 76 45556666678899999999999999998
Q ss_pred cCCCCCh
Q 002846 486 SVRKVSP 492 (874)
Q Consensus 486 ~~~~~sp 492 (874)
. .|..
T Consensus 456 ~--~Pd~ 460 (765)
T PRK10049 456 R--EPQD 460 (765)
T ss_pred h--CCCC
Confidence 7 5444
No 35
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.10 E-value=0.0015 Score=81.08 Aligned_cols=281 Identities=10% Similarity=-0.042 Sum_probs=178.4
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 002846 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (874)
Q Consensus 160 ~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~ 239 (874)
....++.++|.++|+++.+.. | -+...+..++..+...++.++|++.++++... .|+...|-.++..+.
T Consensus 112 y~~~gdyd~Aiely~kaL~~d--P-----~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~-- 180 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKKD--P-----TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNR-- 180 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhhC--C-----CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHH--
Confidence 335577888888888885432 1 12244557777888888888888888887654 455555544433333
Q ss_pred ccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCe
Q 002846 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG 319 (874)
Q Consensus 240 ~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~ 319 (874)
..++..+|+..+. ++.+. .-.+.-.+.-++.+ +.+.|-...|.++..+ .|+.
T Consensus 181 --------~~~~~~~AL~~~e-------kll~~-~P~n~e~~~~~~~~------l~~~~~~~~a~~l~~~------~p~~ 232 (822)
T PRK14574 181 --------ATDRNYDALQASS-------EAVRL-APTSEEVLKNHLEI------LQRNRIVEPALRLAKE------NPNL 232 (822)
T ss_pred --------hcchHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHcCCcHHHHHHHHh------Cccc
Confidence 2344444777763 55543 22233333344444 5555666666554443 1222
Q ss_pred eeec------------------------cc---cHHHHHHhhhcC------CCCc-ccccccccccCCccchHHHHHHhc
Q 002846 320 HMKL------------------------NS---QLLDGRSNLERG------PDDQ-SRKKDWSIDNQDADEIRLSEDAKK 365 (874)
Q Consensus 320 ~ty~------------------------~g---~~~eA~~l~~~m------~pd~-~ty~~w~i~~~~~~n~lI~~~~k~ 365 (874)
++-. .. -++.|+.-++.+ .|.. ..|.-+. -=.|-++.+.
T Consensus 233 f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~-------~Drl~aL~~r 305 (822)
T PRK14574 233 VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRAR-------IDRLGALLVR 305 (822)
T ss_pred cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHH-------HHHHHHHHHh
Confidence 2111 11 223333333333 1221 1120000 1234567788
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-----CCCCcccHHHHHHHHHhCCChhH
Q 002846 366 YAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-----INPRLRSYGPALSVFCNNGDVDK 440 (874)
Q Consensus 366 g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~G-----i~Pd~~tYn~LI~a~~k~G~~~~ 440 (874)
|++.++.+.|+.|...|.+.-..+--++.++|...+.+++|..++.+..... ..++......|..+|...+++++
T Consensus 306 ~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~ 385 (822)
T PRK14574 306 HQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDK 385 (822)
T ss_pred hhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHH
Confidence 9999999999999999976556688999999999999999999999986542 22344446789999999999999
Q ss_pred HHHHHHHHHHcC-------------CCCCHHHH-HHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 441 ACSVEEHMLEHG-------------VYPEEPEL-EALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 441 A~~l~~eM~~~G-------------v~Pd~~ty-~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
|..+++.|.+.- -.||-..+ ..++..+...|++.+|.++++++...
T Consensus 386 A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~ 445 (822)
T PRK14574 386 AYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST 445 (822)
T ss_pred HHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999998731 12333343 33556678899999999999999876
No 36
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.07 E-value=0.00079 Score=78.59 Aligned_cols=275 Identities=14% Similarity=0.071 Sum_probs=196.3
Q ss_pred ChhHHHHHHHHHhhCCCCCCCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-C-CCCCHHHHHHHHHHHHhccc
Q 002846 165 NDSGQYKVRGITDEKGSKKSKKDRSEQ-FQLRVELDMCSKRGDVMGAIRLYDKAQRE-G-IKLGQYHYNVLLYLCSSAAV 241 (874)
Q Consensus 165 ~~~~A~~vf~eM~~~g~k~~~g~~Pd~-~tyn~LI~a~~k~G~~~~Al~lf~~M~~~-G-i~pd~~tyn~LL~a~~~~~~ 241 (874)
+..+|...|+.... ..+|. .+..-+=.+|..-+++++|.++|+..++. . ..-+..+|.++|.-+-+.
T Consensus 334 ~~~~A~~~~~klp~--------h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~-- 403 (638)
T KOG1126|consen 334 NCREALNLFEKLPS--------HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE-- 403 (638)
T ss_pred HHHHHHHHHHhhHH--------hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh--
Confidence 34567777776522 12332 33344446888889999999999999853 2 234678999999877621
Q ss_pred CCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCC-Cee
Q 002846 242 GVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS-NGH 320 (874)
Q Consensus 242 ~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~P-d~~ 320 (874)
-++.++. +++.+. .-..-.||.++=++ |.-.++.+.|++.|.+-... .| ..+
T Consensus 404 ------------v~Ls~La------q~Li~~-~~~sPesWca~GNc------fSLQkdh~~Aik~f~RAiQl--dp~faY 456 (638)
T KOG1126|consen 404 ------------VALSYLA------QDLIDT-DPNSPESWCALGNC------FSLQKDHDTAIKCFKRAIQL--DPRFAY 456 (638)
T ss_pred ------------HHHHHHH------HHHHhh-CCCCcHHHHHhcch------hhhhhHHHHHHHHHHHhhcc--CCccch
Confidence 2333332 334332 11145789999999 99999999999999876654 45 556
Q ss_pred eec--------cccHHHHHHhhhcC-CCCcccccccccccCCccchHH---HHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 002846 321 MKL--------NSQLLDGRSNLERG-PDDQSRKKDWSIDNQDADEIRL---SEDAKKYAFQRGFEIYEKMCLDEVPMNEA 388 (874)
Q Consensus 321 ty~--------~g~~~eA~~l~~~m-~pd~~ty~~w~i~~~~~~n~lI---~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~ 388 (874)
+|+ ....+.|...|+.. ..|.-.| |++- -.|.|.++++.|.-.|+.-.+-+ +-|.+
T Consensus 457 ayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhY-----------nAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsv 524 (638)
T KOG1126|consen 457 AYTLLGHESIATEEFDKAMKSFRKALGVDPRHY-----------NAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSV 524 (638)
T ss_pred hhhhcCChhhhhHHHHhHHHHHHhhhcCCchhh-----------HHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchh
Confidence 666 55678888888876 7788888 5553 45778999999999998877654 33677
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHH
Q 002846 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP-ELEALLRVS 467 (874)
Q Consensus 389 tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~-ty~~LI~~~ 467 (874)
....+-..+-+.|+.|+|++++++.....-+--..-|. ....+...++.++|+..++++++ +.|+.. .|-.|-..|
T Consensus 525 i~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~-~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~ 601 (638)
T KOG1126|consen 525 ILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH-RASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIY 601 (638)
T ss_pred HHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH-HHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHH
Confidence 77788888889999999999999877654333344444 34445567899999999999988 667765 455666778
Q ss_pred HhcCCchHHHHHHHHHHhcCCCCChh
Q 002846 468 VEAGKGDRVYYLLHKLRTSVRKVSPS 493 (874)
Q Consensus 468 ~~~G~~d~A~~ll~~M~~~~~~~sp~ 493 (874)
-+.|+.+.|+.=|.-+.+. .|...
T Consensus 602 k~~~~~~~Al~~f~~A~~l--dpkg~ 625 (638)
T KOG1126|consen 602 KRLGNTDLALLHFSWALDL--DPKGA 625 (638)
T ss_pred HHHccchHHHHhhHHHhcC--CCccc
Confidence 8899999999888887765 54443
No 37
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.99 E-value=7.3e-06 Score=59.12 Aligned_cols=35 Identities=23% Similarity=0.313 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 002846 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ 226 (874)
Q Consensus 192 ~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~ 226 (874)
++||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999984
No 38
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.96 E-value=0.002 Score=81.60 Aligned_cols=229 Identities=8% Similarity=-0.016 Sum_probs=166.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhh
Q 002846 190 EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTEL 269 (874)
Q Consensus 190 d~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em 269 (874)
+...|..+-..+.. |+..+|+..|.+.... .|+......+..++. ..|+.++|...|. .+
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~----------~~Gr~eeAi~~~r-------ka 535 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAY----------QVEDYATALAAWQ-------KI 535 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHH----------HCCCHHHHHHHHH-------HH
Confidence 34566666555555 8999999988887754 366544333333334 6799999999995 33
Q ss_pred hhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCccccccccc
Q 002846 270 GDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSI 349 (874)
Q Consensus 270 ~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i 349 (874)
... -++...+..+... +.+.|++++|...|++..... |+.... +
T Consensus 536 ~~~--~p~~~a~~~la~a------ll~~Gd~~eA~~~l~qAL~l~--P~~~~l---------------------~----- 579 (987)
T PRK09782 536 SLH--DMSNEDLLAAANT------AQAAGNGAARDRWLQQAEQRG--LGDNAL---------------------Y----- 579 (987)
T ss_pred hcc--CCCcHHHHHHHHH------HHHCCCHHHHHHHHHHHHhcC--CccHHH---------------------H-----
Confidence 321 1122234444445 778899999999999887753 322111 0
Q ss_pred ccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-cccHHHH
Q 002846 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPA 428 (874)
Q Consensus 350 ~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd-~~tYn~L 428 (874)
..+...+.+.|++++|...|++..+. .|+...|..+...+.+.|+.++|...+++.... .|+ ...++.+
T Consensus 580 ------~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nL 649 (987)
T PRK09782 580 ------WWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAAL 649 (987)
T ss_pred ------HHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 12222333559999999999998865 467889999999999999999999999998776 465 4455556
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 429 LSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 429 I~a~~k~G~~~~A~~l~~eM~~~Gv~P-d~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
-..+...|+.++|..+++...+.. | +...+..|-.++...|++++|...|++....
T Consensus 650 G~aL~~~G~~eeAi~~l~~AL~l~--P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 650 GYALWDSGDIAQSREMLERAHKGL--PDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 668999999999999999988743 5 5567788888899999999999999998876
No 39
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.92 E-value=0.00052 Score=79.04 Aligned_cols=276 Identities=11% Similarity=0.017 Sum_probs=196.6
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 002846 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (874)
Q Consensus 159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (874)
.+...++..+|+.+++.|++.. |+ .+..|.-+-.++...|+.+.|...|.+..+ +.|+.+...+-+.-+-+
T Consensus 125 ~~kerg~~~~al~~y~~aiel~--p~-----fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlk 195 (966)
T KOG4626|consen 125 ILKERGQLQDALALYRAAIELK--PK-----FIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLK 195 (966)
T ss_pred HHHHhchHHHHHHHHHHHHhcC--ch-----hhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHH
Confidence 4557789999999999996632 11 346888899999999999999999999875 45766655544444442
Q ss_pred cccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCC
Q 002846 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (874)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd 318 (874)
..|++++|..-+. +.++.... =.+.|+-|=.. +-..|.+-.|.+-|++-... .|+
T Consensus 196 ---------a~Grl~ea~~cYl------kAi~~qp~--fAiawsnLg~~------f~~~Gei~~aiq~y~eAvkl--dP~ 250 (966)
T KOG4626|consen 196 ---------AEGRLEEAKACYL------KAIETQPC--FAIAWSNLGCV------FNAQGEIWLAIQHYEEAVKL--DPN 250 (966)
T ss_pred ---------hhcccchhHHHHH------HHHhhCCc--eeeeehhcchH------HhhcchHHHHHHHHHHhhcC--CCc
Confidence 3477778877763 22222111 12446666555 77789999999999987765 343
Q ss_pred ee--eeccccHHHHHHhhhcC----------CCCc-ccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 002846 319 GH--MKLNSQLLDGRSNLERG----------PDDQ-SRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPM 385 (874)
Q Consensus 319 ~~--ty~~g~~~eA~~l~~~m----------~pd~-~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~P 385 (874)
-. -+|.|.+.++...|++. .|+. +.+ .-|-.-|-..|.++-|++-+++-.+. .|
T Consensus 251 f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~-----------gNla~iYyeqG~ldlAI~~Ykral~~--~P 317 (966)
T KOG4626|consen 251 FLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAH-----------GNLACIYYEQGLLDLAIDTYKRALEL--QP 317 (966)
T ss_pred chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhc-----------cceEEEEeccccHHHHHHHHHHHHhc--CC
Confidence 21 22345555444444442 5543 333 33444566889999999999987765 45
Q ss_pred C-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-HHHHH
Q 002846 386 N-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE-PELEA 462 (874)
Q Consensus 386 d-~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd-~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~-~ty~~ 462 (874)
+ ...|+.|..++-..|++.+|.+.++..... .|+ ..+-+.|=..|...|.+++|..+|....+ +.|+- ..+|-
T Consensus 318 ~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nN 393 (966)
T KOG4626|consen 318 NFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNN 393 (966)
T ss_pred CchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhh
Confidence 4 568999999999999999999999887665 344 44566688899999999999999988766 44553 45678
Q ss_pred HHHHHHhcCCchHHHHHHHHHHh
Q 002846 463 LLRVSVEAGKGDRVYYLLHKLRT 485 (874)
Q Consensus 463 LI~~~~~~G~~d~A~~ll~~M~~ 485 (874)
|-..|-+.|++++|...+++..+
T Consensus 394 La~i~kqqgnl~~Ai~~Ykealr 416 (966)
T KOG4626|consen 394 LASIYKQQGNLDDAIMCYKEALR 416 (966)
T ss_pred HHHHHHhcccHHHHHHHHHHHHh
Confidence 88888999999999999988764
No 40
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.90 E-value=1.9e-05 Score=56.93 Aligned_cols=33 Identities=30% Similarity=0.673 Sum_probs=22.5
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 002846 424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE 456 (874)
Q Consensus 424 tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd 456 (874)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566666666666666666666666666666665
No 41
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.89 E-value=0.046 Score=68.21 Aligned_cols=301 Identities=11% Similarity=-0.019 Sum_probs=179.3
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH---H
Q 002846 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQ--FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLL---Y 234 (874)
Q Consensus 160 ~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~--~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL---~ 234 (874)
..+.|+...|+..|++..+. .|+. ..+ .++..+...|+.++|+.++++.. .|+...+..++ .
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~--------~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ 110 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKA--------GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAAR 110 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhh--------CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHH
Confidence 45788889999999998432 2331 233 88888889999999999999987 44333333333 3
Q ss_pred HHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcC
Q 002846 235 LCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG 314 (874)
Q Consensus 235 a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~G 314 (874)
.+. ..|+.++|.+++. ++.+. .-.|...+..++.. +.+.++.++|++.+..+...
T Consensus 111 ly~----------~~gdyd~Aiely~-------kaL~~-dP~n~~~l~gLa~~------y~~~~q~~eAl~~l~~l~~~- 165 (822)
T PRK14574 111 AYR----------NEKRWDQALALWQ-------SSLKK-DPTNPDLISGMIMT------QADAGRGGVVLKQATELAER- 165 (822)
T ss_pred HHH----------HcCCHHHHHHHHH-------HHHhh-CCCCHHHHHHHHHH------HhhcCCHHHHHHHHHHhccc-
Confidence 444 6799999999994 55553 33344445566666 88889999999999988765
Q ss_pred CCCCeeeec--------cccHHHHHHhhhcC---CCCcc-cccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002846 315 QFSNGHMKL--------NSQLLDGRSNLERG---PDDQS-RKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDE 382 (874)
Q Consensus 315 i~Pd~~ty~--------~g~~~eA~~l~~~m---~pd~~-ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~G 382 (874)
.|+...|. .++..+|+..++++ .|+.. .+ .-++..+.+.|....|.++..+-...
T Consensus 166 -dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~-----------~~~~~~l~~~~~~~~a~~l~~~~p~~- 232 (822)
T PRK14574 166 -DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVL-----------KNHLEILQRNRIVEPALRLAKENPNL- 232 (822)
T ss_pred -CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHH-----------HHHHHHHHHcCCcHHHHHHHHhCccc-
Confidence 34433332 23333455555555 34322 22 34445555555555555544431110
Q ss_pred CCCCH------HHHHHHHHHHH-----hcCCh---hHHHHHHHHHHHC-CCCCC-----cccHHHHHHHHHhCCChhHHH
Q 002846 383 VPMNE------ASLTAVGRMAM-----SMGDG---DMAFDMVKRMKSL-GINPR-----LRSYGPALSVFCNNGDVDKAC 442 (874)
Q Consensus 383 v~Pd~------~tyn~LI~~~~-----~~G~~---d~A~~l~~~M~~~-Gi~Pd-----~~tYn~LI~a~~k~G~~~~A~ 442 (874)
+.+.. .-...+|+.-. ...++ |.|+.-++.+... +-.|. ....--.|-++...|+++++.
T Consensus 233 f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi 312 (822)
T PRK14574 233 VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLI 312 (822)
T ss_pred cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHH
Confidence 00100 00111111110 11122 2233333333321 22232 222234677888999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC--CChh----HHHHHHHHHhcchHHHhh
Q 002846 443 SVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRK--VSPS----TADVIAKWFNSKEAARLG 511 (874)
Q Consensus 443 ~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~--~sp~----T~~~I~~~~~s~~~~~a~ 511 (874)
.-|+.|...|...-...-.++-++|...+.+++|..++..+....-. ..+. +-...-++..++...+|.
T Consensus 313 ~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~ 387 (822)
T PRK14574 313 KEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAY 387 (822)
T ss_pred HHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHH
Confidence 99999999987655567789999999999999999999998665211 1111 123356666666655544
No 42
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.85 E-value=2.1e-05 Score=56.75 Aligned_cols=33 Identities=30% Similarity=0.585 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 002846 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL 224 (874)
Q Consensus 192 ~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~p 224 (874)
.+||++|.+|++.|+++.|+++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 699999999999999999999999999999998
No 43
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.82 E-value=0.0092 Score=64.63 Aligned_cols=229 Identities=16% Similarity=0.144 Sum_probs=162.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhh
Q 002846 204 RGDVMGAIRLYDKAQREGIKLGQYHYN---VLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQ 280 (874)
Q Consensus 204 ~G~~~~Al~lf~~M~~~Gi~pd~~tyn---~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vt 280 (874)
+.+.++|.++|-+|.+. |..||- +|=+.|- ..|.+++|+.+.. .+.++.+..
T Consensus 48 s~Q~dKAvdlF~e~l~~----d~~t~e~~ltLGnLfR----------sRGEvDRAIRiHQ-------~L~~spdlT---- 102 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE----DPETFEAHLTLGNLFR----------SRGEVDRAIRIHQ-------TLLESPDLT---- 102 (389)
T ss_pred hcCcchHHHHHHHHHhc----CchhhHHHHHHHHHHH----------hcchHHHHHHHHH-------HHhcCCCCc----
Confidence 57889999999999973 333433 3334444 6799999999994 555553333
Q ss_pred hHhhhcC-cccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHH
Q 002846 281 LDYGSSP-MIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRL 359 (874)
Q Consensus 281 yn~LI~~-~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI 359 (874)
++--+.+ -.....|-..|-+|.|..+|..+.+.|.. .+.|+ --|+
T Consensus 103 ~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~ef----------a~~Al------------------------qqLl 148 (389)
T COG2956 103 FEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEF----------AEGAL------------------------QQLL 148 (389)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhh----------hHHHH------------------------HHHH
Confidence 2221111 01122377788999999999998876521 12222 4577
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHH-HHHHh
Q 002846 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEA----SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL-SVFCN 434 (874)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~----tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI-~a~~k 434 (874)
.-|-+..++++|.++=+++...|-.+..+ -|--|...+....+++.|..++++-.+. .|+.+--+.++ .-+..
T Consensus 149 ~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~ 226 (389)
T COG2956 149 NIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGRVELA 226 (389)
T ss_pred HHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHh
Confidence 88889999999999999888876544322 3455555666678899999999887665 34444444444 45667
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCChh
Q 002846 435 NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (874)
Q Consensus 435 ~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~ 493 (874)
.|+..+|.+.++...+.+-.--..+...|..+|...|+.++....+.++.+...++.+.
T Consensus 227 ~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~ 285 (389)
T COG2956 227 KGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAE 285 (389)
T ss_pred ccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHH
Confidence 89999999999999998765566778899999999999999999999999885565554
No 44
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.81 E-value=0.0043 Score=78.70 Aligned_cols=220 Identities=10% Similarity=0.024 Sum_probs=156.2
Q ss_pred CChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCC
Q 002846 164 TNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGV 243 (874)
Q Consensus 164 ~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~ 243 (874)
++.++|...+.+-... .|+......+...+...|++++|+..|+++... .|+...+..+-.++.
T Consensus 490 ~~~~eAi~a~~~Al~~--------~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all------ 553 (987)
T PRK09782 490 TLPGVALYAWLQAEQR--------QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQ------ 553 (987)
T ss_pred CCcHHHHHHHHHHHHh--------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHH------
Confidence 6777899977776432 244333333444556899999999999998644 444445555555555
Q ss_pred CcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeec
Q 002846 244 VKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL 323 (874)
Q Consensus 244 ~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~ 323 (874)
+.|+.++|...+. ..... ...+...+..+... ....|++++|...|++.... .|+...|
T Consensus 554 ----~~Gd~~eA~~~l~-------qAL~l-~P~~~~l~~~La~~------l~~~Gr~~eAl~~~~~AL~l--~P~~~a~- 612 (987)
T PRK09782 554 ----AAGNGAARDRWLQ-------QAEQR-GLGDNALYWWLHAQ------RYIPGQPELALNDLTRSLNI--APSANAY- 612 (987)
T ss_pred ----HCCCHHHHHHHHH-------HHHhc-CCccHHHHHHHHHH------HHhCCCHHHHHHHHHHHHHh--CCCHHHH-
Confidence 6799999999995 33332 21122222222222 33559999999999887765 3443333
Q ss_pred cccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 002846 324 NSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDG 403 (874)
Q Consensus 324 ~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~ 403 (874)
..+-..+.+.|+.++|...|++..... +-+...++.+-..+...|+.
T Consensus 613 --------------------------------~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~ 659 (987)
T PRK09782 613 --------------------------------VARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDI 659 (987)
T ss_pred --------------------------------HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH
Confidence 666678899999999999999988764 33567788888899999999
Q ss_pred hHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH
Q 002846 404 DMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE 457 (874)
Q Consensus 404 d~A~~l~~~M~~~Gi~Pd-~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~ 457 (874)
++|..++++..+. .|+ ...+..+-.++...|++++|...|+...+.. |+.
T Consensus 660 eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~--P~~ 710 (987)
T PRK09782 660 AQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI--DNQ 710 (987)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCC
Confidence 9999999988775 354 5567778888999999999999999988743 543
No 45
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.75 E-value=0.0025 Score=73.21 Aligned_cols=58 Identities=9% Similarity=0.012 Sum_probs=43.7
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 002846 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIK 223 (874)
Q Consensus 159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~ 223 (874)
.....++.+.|...++++.+.. | -+...+..+...|.+.|++++|++++..+.+.+..
T Consensus 162 l~l~~g~~~~Al~~l~~~~~~~--P-----~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~ 219 (398)
T PRK10747 162 IQLARNENHAARHGVDKLLEVA--P-----RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVG 219 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC--C-----CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCC
Confidence 4456788888888888884432 1 12367788888889999999999999999877655
No 46
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.75 E-value=0.0022 Score=75.12 Aligned_cols=244 Identities=13% Similarity=0.054 Sum_probs=169.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchh
Q 002846 192 FQLRVELDMCSKRGDVMGAIRLYDKAQRE---GIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTE 268 (874)
Q Consensus 192 ~tyn~LI~a~~k~G~~~~Al~lf~~M~~~---Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~e 268 (874)
.+..-|-..|...|+++.|..++....+. +.-.+.-....++..|+. -|...+++.+|..+|. +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~------~y~~~~k~~eAv~ly~-------~ 266 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILAL------VYRSLGKYDEAVNLYE-------E 266 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHH------HHHHhccHHHHHHHHH-------H
Confidence 56667889999999999999999998743 222444555666665542 2336788899998885 2
Q ss_pred hh----hcCCCCc---hhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcC----
Q 002846 269 LG----DSRDMDN---NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERG---- 337 (874)
Q Consensus 269 m~----~~~gi~d---~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m---- 337 (874)
+. ...|-.+ ..+++.|=.. |++.|++++|...+++-.+- +...
T Consensus 267 AL~i~e~~~G~~h~~va~~l~nLa~l------y~~~GKf~EA~~~~e~Al~I--------------------~~~~~~~~ 320 (508)
T KOG1840|consen 267 ALTIREEVFGEDHPAVAATLNNLAVL------YYKQGKFAEAEEYCERALEI--------------------YEKLLGAS 320 (508)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHH------HhccCChHHHHHHHHHHHHH--------------------HHHhhccC
Confidence 21 1123332 2347777677 99999999998887754332 1110
Q ss_pred CCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHH---CCCCCC----HHHHHHHHHHHHhcCChhHHHHHH
Q 002846 338 PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCL---DEVPMN----EASLTAVGRMAMSMGDGDMAFDMV 410 (874)
Q Consensus 338 ~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~---~Gv~Pd----~~tyn~LI~~~~~~G~~d~A~~l~ 410 (874)
.|.+.+. .+.+..-|+..+++++|..++..-.+ .-..++ ..+|+.|-..|-+.|++++|.++|
T Consensus 321 ~~~v~~~----------l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~ 390 (508)
T KOG1840|consen 321 HPEVAAQ----------LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELY 390 (508)
T ss_pred hHHHHHH----------HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 1122111 16677888899999999999976543 112233 358999999999999999999999
Q ss_pred HHHHHCC----C--CCC-cccHHHHHHHHHhCCChhHHHHHHHH----HHHcCCC-C-CHHHHHHHHHHHHhcCCchHHH
Q 002846 411 KRMKSLG----I--NPR-LRSYGPALSVFCNNGDVDKACSVEEH----MLEHGVY-P-EEPELEALLRVSVEAGKGDRVY 477 (874)
Q Consensus 411 ~~M~~~G----i--~Pd-~~tYn~LI~a~~k~G~~~~A~~l~~e----M~~~Gv~-P-d~~ty~~LI~~~~~~G~~d~A~ 477 (874)
++....- - .+. -..++-|=..|-+.+...+|.++|.+ |+..|.. | ...+|.-|...|.+.|+++.|.
T Consensus 391 k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~ 470 (508)
T KOG1840|consen 391 KKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAE 470 (508)
T ss_pred HHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHH
Confidence 9876441 1 121 34556677788889999999999976 4333432 3 3468889999999999999999
Q ss_pred HHHHHHH
Q 002846 478 YLLHKLR 484 (874)
Q Consensus 478 ~ll~~M~ 484 (874)
++.+...
T Consensus 471 ~~~~~~~ 477 (508)
T KOG1840|consen 471 ELEEKVL 477 (508)
T ss_pred HHHHHHH
Confidence 9998765
No 47
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.73 E-value=4.5e-05 Score=54.97 Aligned_cols=32 Identities=31% Similarity=0.542 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 002846 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP 420 (874)
Q Consensus 389 tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~P 420 (874)
|||++|++|++.|+++.|+++|++|++.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555444
No 48
>PRK12370 invasion protein regulator; Provisional
Probab=97.72 E-value=0.0072 Score=72.56 Aligned_cols=246 Identities=12% Similarity=0.020 Sum_probs=143.6
Q ss_pred hhHHHHHHHHHhhCCCCCCCCCCCC-HHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002846 166 DSGQYKVRGITDEKGSKKSKKDRSE-QFQLRVELDMCS---------KRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYL 235 (874)
Q Consensus 166 ~~~A~~vf~eM~~~g~k~~~g~~Pd-~~tyn~LI~a~~---------k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a 235 (874)
...|...|++..+. .|+ ...|..+-.++. ..+++++|...+++..+.. +-+...+..+=.+
T Consensus 277 ~~~A~~~~~~Al~l--------dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~ 347 (553)
T PRK12370 277 LQQALKLLTQCVNM--------SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLI 347 (553)
T ss_pred HHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 56888999987432 233 234443333322 2345889999999988653 2234555555444
Q ss_pred HHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCC
Q 002846 236 CSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQ 315 (874)
Q Consensus 236 ~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi 315 (874)
+. ..|+.++|...|. +..+. .-.+...|..+-.. +...|++++|...+++..+..
T Consensus 348 ~~----------~~g~~~~A~~~~~-------~Al~l-~P~~~~a~~~lg~~------l~~~G~~~eAi~~~~~Al~l~- 402 (553)
T PRK12370 348 NT----------IHSEYIVGSLLFK-------QANLL-SPISADIKYYYGWN------LFMAGQLEEALQTINECLKLD- 402 (553)
T ss_pred HH----------HccCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHCCCHHHHHHHHHHHHhcC-
Confidence 44 5688888988885 33332 22234445555555 777888888888888876653
Q ss_pred CCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 002846 316 FSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVG 394 (874)
Q Consensus 316 ~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~P-d~~tyn~LI 394 (874)
|+...+ + ..+...+...|++++|...+++..... .| +...+..+-
T Consensus 403 -P~~~~~---------------------~-----------~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la 448 (553)
T PRK12370 403 -PTRAAA---------------------G-----------ITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQV 448 (553)
T ss_pred -CCChhh---------------------H-----------HHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHH
Confidence 321111 0 222333555778888888888876553 23 344566677
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCccc-HHHHHHHHHhCCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCC
Q 002846 395 RMAMSMGDGDMAFDMVKRMKSLGINPRLRS-YGPALSVFCNNGDVDKACSVEEHMLEH-GVYPEEPELEALLRVSVEAGK 472 (874)
Q Consensus 395 ~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~t-Yn~LI~a~~k~G~~~~A~~l~~eM~~~-Gv~Pd~~ty~~LI~~~~~~G~ 472 (874)
.++...|+.++|...+.++... .|+... .+.+-..|+..| ++|...++.+.+. .-.+...-+..++. .-.|+
T Consensus 449 ~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~--~~~g~ 522 (553)
T PRK12370 449 MFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVL--VAHGE 522 (553)
T ss_pred HHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHH--HHHhh
Confidence 7778888888888888776544 343332 333444556666 4777766666543 22233333333333 33455
Q ss_pred chHHHHHHHHHHhc
Q 002846 473 GDRVYYLLHKLRTS 486 (874)
Q Consensus 473 ~d~A~~ll~~M~~~ 486 (874)
-+.+..+ +++.+.
T Consensus 523 ~~~~~~~-~~~~~~ 535 (553)
T PRK12370 523 AIAEKMW-NKFKNE 535 (553)
T ss_pred hHHHHHH-HHhhcc
Confidence 5555555 666655
No 49
>PRK12370 invasion protein regulator; Provisional
Probab=97.61 E-value=0.0062 Score=73.12 Aligned_cols=240 Identities=10% Similarity=-0.051 Sum_probs=136.5
Q ss_pred CCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhc
Q 002846 189 SEQFQLRVELDMCSK-----RGDVMGAIRLYDKAQREGIKLGQ-YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVS 262 (874)
Q Consensus 189 Pd~~tyn~LI~a~~k-----~G~~~~Al~lf~~M~~~Gi~pd~-~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~ 262 (874)
.+...|...+.+-.. .+++++|+.+|++..+. .|+. ..|..|-.++...+..+. ....++.++|...+.
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~-~~~~~~~~~A~~~~~-- 328 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGI-FDKQNAMIKAKEHAI-- 328 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCC-cccchHHHHHHHHHH--
Confidence 344566666665422 23578999999998854 4553 344433333321110000 113355677777774
Q ss_pred ccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcc
Q 002846 263 TMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQS 342 (874)
Q Consensus 263 ~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ 342 (874)
+..+. +-.+...|..+-.. +...|++++|...|++..+.. |+....
T Consensus 329 -----~Al~l-dP~~~~a~~~lg~~------~~~~g~~~~A~~~~~~Al~l~--P~~~~a-------------------- 374 (553)
T PRK12370 329 -----KATEL-DHNNPQALGLLGLI------NTIHSEYIVGSLLFKQANLLS--PISADI-------------------- 374 (553)
T ss_pred -----HHHhc-CCCCHHHHHHHHHH------HHHccCHHHHHHHHHHHHHhC--CCCHHH--------------------
Confidence 33222 22244455555444 667788888888888776653 332211
Q ss_pred cccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc
Q 002846 343 RKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422 (874)
Q Consensus 343 ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~ 422 (874)
| ..+-..+...|+.++|...|++..+..-. +...+..++..+...|++++|...+++..... .|+.
T Consensus 375 -~-----------~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~ 440 (553)
T PRK12370 375 -K-----------YYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDN 440 (553)
T ss_pred -H-----------HHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccC
Confidence 1 44455667788888888888887765422 22233334445666788888888887776542 2433
Q ss_pred c-cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCchHHHHHHHHHHh
Q 002846 423 R-SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE-LEALLRVSVEAGKGDRVYYLLHKLRT 485 (874)
Q Consensus 423 ~-tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~t-y~~LI~~~~~~G~~d~A~~ll~~M~~ 485 (874)
. .+..+-..|...|+.++|.+.+..+... .|+... .+.|-..|+..| ++|...++.+.+
T Consensus 441 ~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 441 PILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 3 3444556666788888888888776543 243333 334444556656 467776666655
No 50
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.54 E-value=7e-05 Score=52.65 Aligned_cols=31 Identities=19% Similarity=0.355 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 002846 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGI 222 (874)
Q Consensus 192 ~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi 222 (874)
++||+||++|++.|++++|.++|++|++.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4899999999999999999999999999885
No 51
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.53 E-value=0.0064 Score=67.81 Aligned_cols=192 Identities=9% Similarity=0.043 Sum_probs=134.2
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCeeeec-------cccHHHHHHhhhcC----CCCcccccccccccCCccchHHHHHHh
Q 002846 296 SSYRFDDLDSTFNEKENLGQFSNGHMKL-------NSQLLDGRSNLERG----PDDQSRKKDWSIDNQDADEIRLSEDAK 364 (874)
Q Consensus 296 ~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~-------~g~~~eA~~l~~~m----~pd~~ty~~w~i~~~~~~n~lI~~~~k 364 (874)
-.|++++|.+.+.|-....-.-....|| .|++++|+..|-.+ ..++.+. --+-+-|--
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl-----------~qianiye~ 570 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVL-----------VQIANIYEL 570 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHH-----------HHHHHHHHH
Confidence 3577888888888776653222222233 67888888877665 2222222 233345555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHH
Q 002846 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSV 444 (874)
Q Consensus 365 ~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l 444 (874)
..+...|++++-+... -++-|....+-|.+.|-+.|+-..|++.+-+--.. ++.++.|..-|-..|....-+++|...
T Consensus 571 led~aqaie~~~q~~s-lip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y 648 (840)
T KOG2003|consen 571 LEDPAQAIELLMQANS-LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINY 648 (840)
T ss_pred hhCHHHHHHHHHHhcc-cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHH
Confidence 6677778887754332 24457889999999999999999999987653322 556777877788888888999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHH-hcCCchHHHHHHHHHHhcCCCCChh-HHHHHHHHHhc
Q 002846 445 EEHMLEHGVYPEEPELEALLRVSV-EAGKGDRVYYLLHKLRTSVRKVSPS-TADVIAKWFNS 504 (874)
Q Consensus 445 ~~eM~~~Gv~Pd~~ty~~LI~~~~-~~G~~d~A~~ll~~M~~~~~~~sp~-T~~~I~~~~~s 504 (874)
|+...- +.|+..-|..||..|. +.|++.+|++++..+... .|..- ....+...|..
T Consensus 649 ~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk--fpedldclkflvri~~d 706 (840)
T KOG2003|consen 649 FEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK--FPEDLDCLKFLVRIAGD 706 (840)
T ss_pred HHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--CccchHHHHHHHHHhcc
Confidence 987644 6799999999998875 679999999999998876 43322 44445555443
No 52
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.52 E-value=0.0099 Score=68.58 Aligned_cols=272 Identities=7% Similarity=-0.052 Sum_probs=171.9
Q ss_pred hhhhhchHHHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 002846 151 VNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYN 230 (874)
Q Consensus 151 ~~~~l~~~~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn 230 (874)
.+..+.-+...+.++.+.|.+.+....+.- |+ +....--+....+...|+++.|+..++++.+.. +-+...+-
T Consensus 119 ~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~----~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ 191 (409)
T TIGR00540 119 LNLIKAAEAAQQRGDEARANQHLEEAAELA--GN----DNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLK 191 (409)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--Cc----CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 344555556777899999999999974321 11 111233334677788999999999999999775 33556677
Q ss_pred HHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhh-hcCcccChhhhhcCChHHHHHHHHH
Q 002846 231 VLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYG-SSPMIDKLESNSSYRFDDLDSTFNE 309 (874)
Q Consensus 231 ~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~L-I~~~~~~~~~~~~g~~e~A~~lf~e 309 (874)
.+..++. ..|+.++|...+. .+.+. ++.+.-.+..+ +.+ ...+...+.-+.+.+.+..
T Consensus 192 ll~~~~~----------~~~d~~~a~~~l~-------~l~k~-~~~~~~~~~~l~~~a---~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 192 LAEEAYI----------RSGAWQALDDIID-------NMAKA-GLFDDEEFADLEQKA---EIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHH----------HHhhHHHHHHHHH-------HHHHc-CCCCHHHHHHHHHHH---HHHHHHHHHHhcCHHHHHH
Confidence 7777887 7799999999985 44443 33321111100 000 0000111111111222222
Q ss_pred HHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 002846 310 KENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEAS 389 (874)
Q Consensus 310 M~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~t 389 (874)
+...- |.. ...+...+ -.+...+...|+.++|.+++++..+.. ||...
T Consensus 251 ~~~~~--p~~-----------------~~~~~~l~-----------~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~ 298 (409)
T TIGR00540 251 WWKNQ--PRH-----------------RRHNIALK-----------IALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRA 298 (409)
T ss_pred HHHHC--CHH-----------------HhCCHHHH-----------HHHHHHHHHCCChHHHHHHHHHHHhhC--CCccc
Confidence 22221 100 00122333 677788999999999999999998864 44432
Q ss_pred ---HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcc--cH-HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 002846 390 ---LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR--SY-GPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463 (874)
Q Consensus 390 ---yn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~--tY-n~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~L 463 (874)
.....-.....++.+.+.+.++...+. .|+.. .+ .++=..+.+.|++++|.+.|+........|+...+..|
T Consensus 299 ~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~L 376 (409)
T TIGR00540 299 ISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMA 376 (409)
T ss_pred chhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHH
Confidence 122222233457888898888877654 46655 33 34556677899999999999954444456999999999
Q ss_pred HHHHHhcCCchHHHHHHHHHH
Q 002846 464 LRVSVEAGKGDRVYYLLHKLR 484 (874)
Q Consensus 464 I~~~~~~G~~d~A~~ll~~M~ 484 (874)
-..+.+.|+.++|.+++++-.
T Consensus 377 a~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 377 ADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999998753
No 53
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.50 E-value=0.00012 Score=51.46 Aligned_cols=29 Identities=31% Similarity=0.620 Sum_probs=15.3
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 002846 424 SYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (874)
Q Consensus 424 tYn~LI~a~~k~G~~~~A~~l~~eM~~~G 452 (874)
|||++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 54
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.41 E-value=0.021 Score=66.34 Aligned_cols=249 Identities=16% Similarity=0.108 Sum_probs=176.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhh
Q 002846 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL-GQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG 270 (874)
Q Consensus 192 ~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~p-d~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~ 270 (874)
.+|.-+-+.+-..|++.+|+.+|+.|.+. +| ....|.-+-.++. ..|+.+.|.+.|. +.+.
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~----------~~~~~~~a~~~~~------~alq 178 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALV----------TQGDLELAVQCFF------EALQ 178 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHH----------hcCCCcccHHHHH------HHHh
Confidence 68888889999999999999999999864 34 3456766767777 6788888888884 2222
Q ss_pred hcCCCCchhh-hHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCC-eeeec--------cccHHHHHHhhhcC---
Q 002846 271 DSRDMDNNGQ-LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN-GHMKL--------NSQLLDGRSNLERG--- 337 (874)
Q Consensus 271 ~~~gi~d~vt-yn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd-~~ty~--------~g~~~eA~~l~~~m--- 337 (874)
-....-.+.+ ...|+++ .|++++|...+.+-.+. .|. .+.|+ .|.+..|...|++.
T Consensus 179 lnP~l~ca~s~lgnLlka---------~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl 247 (966)
T KOG4626|consen 179 LNPDLYCARSDLGNLLKA---------EGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL 247 (966)
T ss_pred cCcchhhhhcchhHHHHh---------hcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC
Confidence 1101112222 4445444 78999999888776654 232 23343 78999999998886
Q ss_pred CCCc-ccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 002846 338 PDDQ-SRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKS 415 (874)
Q Consensus 338 ~pd~-~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd-~~tyn~LI~~~~~~G~~d~A~~l~~~M~~ 415 (874)
.|+- -.| --|=..|...+.+++|...+.+-. ...|+ .+.|..|...|-..|.+|.|++.+++..+
T Consensus 248 dP~f~dAY-----------iNLGnV~ke~~~~d~Avs~Y~rAl--~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~ 314 (966)
T KOG4626|consen 248 DPNFLDAY-----------INLGNVYKEARIFDRAVSCYLRAL--NLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE 314 (966)
T ss_pred CCcchHHH-----------hhHHHHHHHHhcchHHHHHHHHHH--hcCCcchhhccceEEEEeccccHHHHHHHHHHHHh
Confidence 3321 111 112233444455566666555433 33454 56788888889999999999999998876
Q ss_pred CCCCCC-cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 416 LGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 416 ~Gi~Pd-~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd-~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
. .|+ ...|+.|-.++-..|++.+|...+.....-. |+ ....+-|-..|...|.+++|..++..-.+-
T Consensus 315 ~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~--p~hadam~NLgni~~E~~~~e~A~~ly~~al~v 383 (966)
T KOG4626|consen 315 L--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC--PNHADAMNNLGNIYREQGKIEEATRLYLKALEV 383 (966)
T ss_pred c--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 4 676 4689999999999999999999999887643 43 456788888999999999999999887654
No 55
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.30 E-value=0.0014 Score=60.68 Aligned_cols=79 Identities=14% Similarity=0.219 Sum_probs=50.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCcccHHHHHHHHHhCC--------ChhHHHHHHHHHHHcCCCCCHHHHH
Q 002846 391 TAVGRMAMSMGDGDMAFDMVKRMKSLGI-NPRLRSYGPALSVFCNNG--------DVDKACSVEEHMLEHGVYPEEPELE 461 (874)
Q Consensus 391 n~LI~~~~~~G~~d~A~~l~~~M~~~Gi-~Pd~~tYn~LI~a~~k~G--------~~~~A~~l~~eM~~~Gv~Pd~~ty~ 461 (874)
...|..|...+++.....++..+++.|+ .|.+.+|+.+|.+.++.. ++-.++.+|++|...+++|+..||+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3344445555666666666666666666 566666666666665542 2345667777888778888888888
Q ss_pred HHHHHHHh
Q 002846 462 ALLRVSVE 469 (874)
Q Consensus 462 ~LI~~~~~ 469 (874)
.+|..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 88777654
No 56
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.28 E-value=0.14 Score=57.20 Aligned_cols=281 Identities=11% Similarity=0.010 Sum_probs=167.5
Q ss_pred cCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccC
Q 002846 163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVG 242 (874)
Q Consensus 163 ~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~ 242 (874)
.|+...|.++..+-.+.+ ..|- ..|-.-..+--+.||.+.|-.++.+..+.-=.++...+-+.-....
T Consensus 97 eG~~~qAEkl~~rnae~~------e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll----- 164 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG------EQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL----- 164 (400)
T ss_pred cCcHHHHHHHHHHhhhcC------cchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH-----
Confidence 578899999988863332 3333 6777778888899999999999999986533455555555555555
Q ss_pred CCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeee
Q 002846 243 VVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMK 322 (874)
Q Consensus 243 ~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty 322 (874)
..|+...|..-++ +..+. +-.+...-.....+ |.+.|.+...+.++..|.+.|+.-|.-.-
T Consensus 165 -----~~~d~~aA~~~v~-------~ll~~-~pr~~~vlrLa~r~------y~~~g~~~~ll~~l~~L~ka~~l~~~e~~ 225 (400)
T COG3071 165 -----NRRDYPAARENVD-------QLLEM-TPRHPEVLRLALRA------YIRLGAWQALLAILPKLRKAGLLSDEEAA 225 (400)
T ss_pred -----hCCCchhHHHHHH-------HHHHh-CcCChHHHHHHHHH------HHHhccHHHHHHHHHHHHHccCCChHHHH
Confidence 4566666666654 22221 22256668888888 99999999999999999999875544221
Q ss_pred ccccHHHHHHhhhcC-CCCc----ccccccccccCCcc------chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 002846 323 LNSQLLDGRSNLERG-PDDQ----SRKKDWSIDNQDAD------EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLT 391 (874)
Q Consensus 323 ~~g~~~eA~~l~~~m-~pd~----~ty~~w~i~~~~~~------n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn 391 (874)
- -+..--..++++. .++. .+| |.=..+... .+++.-+.++|+.++|.++.++-.+++..|...
T Consensus 226 ~-le~~a~~glL~q~~~~~~~~gL~~~--W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~--- 299 (400)
T COG3071 226 R-LEQQAWEGLLQQARDDNGSEGLKTW--WKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC--- 299 (400)
T ss_pred H-HHHHHHHHHHHHHhccccchHHHHH--HHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH---
Confidence 1 0000000011111 0000 011 111111111 345556667777777777777777666655511
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH-HCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 002846 392 AVGRMAMSMGDGDMAFDMVKRMK-SLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA 470 (874)
Q Consensus 392 ~LI~~~~~~G~~d~A~~l~~~M~-~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~ 470 (874)
..-.+.+-++.+.-.+..+.-. ..+-.| -.+.+|=.-|.+.+.+.+|...|+.-.+ ..|+..+|+.+-+++.+.
T Consensus 300 -~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~ 374 (400)
T COG3071 300 -RLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQL 374 (400)
T ss_pred -HHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHc
Confidence 1122334455555444444332 334444 3344444555677777777777775554 347777777777777777
Q ss_pred CCchHHHHHHHHHHh
Q 002846 471 GKGDRVYYLLHKLRT 485 (874)
Q Consensus 471 G~~d~A~~ll~~M~~ 485 (874)
|+..+|.++.++-..
T Consensus 375 g~~~~A~~~r~e~L~ 389 (400)
T COG3071 375 GEPEEAEQVRREALL 389 (400)
T ss_pred CChHHHHHHHHHHHH
Confidence 777777777766443
No 57
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.18 E-value=0.017 Score=67.72 Aligned_cols=239 Identities=13% Similarity=0.075 Sum_probs=160.1
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCCC-CCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHH---HcCCCCCHH----HH
Q 002846 159 KMEQRTNDSGQYKVRGITDEKGSKKSKK-DRSEQFQL-RVELDMCSKRGDVMGAIRLYDKAQ---REGIKLGQY----HY 229 (874)
Q Consensus 159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g-~~Pd~~ty-n~LI~a~~k~G~~~~Al~lf~~M~---~~Gi~pd~~----ty 229 (874)
.....++++.|..+|+.-.+. .++..| ..|.+.+. +.+=..|...+++.+|..+|.++. +...-++.. ++
T Consensus 208 ~y~~~g~~e~A~~l~k~Al~~-l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l 286 (508)
T KOG1840|consen 208 MYAVQGRLEKAEPLCKQALRI-LEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATL 286 (508)
T ss_pred HHHHhccHHHHHHHHHHHHHH-HHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 456778999999999986543 112222 34554433 335567888999999999999997 333334444 34
Q ss_pred HHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhc-CCCC--chhh-hHhhhcCcccChhhhhcCChHHHHH
Q 002846 230 NVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS-RDMD--NNGQ-LDYGSSPMIDKLESNSSYRFDDLDS 305 (874)
Q Consensus 230 n~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~-~gi~--d~vt-yn~LI~~~~~~~~~~~~g~~e~A~~ 305 (874)
+.|=.+|+ +.|++++|...++.. -++..+ .+.. .+.+ ++.+... ++..+++++|..
T Consensus 287 ~nLa~ly~----------~~GKf~EA~~~~e~A----l~I~~~~~~~~~~~v~~~l~~~~~~------~~~~~~~Eea~~ 346 (508)
T KOG1840|consen 287 NNLAVLYY----------KQGKFAEAEEYCERA----LEIYEKLLGASHPEVAAQLSELAAI------LQSMNEYEEAKK 346 (508)
T ss_pred HHHHHHHh----------ccCChHHHHHHHHHH----HHHHHHhhccChHHHHHHHHHHHHH------HHHhcchhHHHH
Confidence 44444566 889999998888511 122222 1222 3434 6666666 889999999999
Q ss_pred HHHHHHHcCCCCCeeeeccccHHHHHHhhhc-CCCCc----ccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHH
Q 002846 306 TFNEKENLGQFSNGHMKLNSQLLDGRSNLER-GPDDQ----SRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCL 380 (874)
Q Consensus 306 lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~-m~pd~----~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~ 380 (874)
++..-.+. +.. +.++. .+| +-|=..|-+.|++++|.++|++...
T Consensus 347 l~q~al~i--------------------~~~~~g~~~~~~a~~~-----------~nl~~l~~~~gk~~ea~~~~k~ai~ 395 (508)
T KOG1840|consen 347 LLQKALKI--------------------YLDAPGEDNVNLAKIY-----------ANLAELYLKMGKYKEAEELYKKAIQ 395 (508)
T ss_pred HHHHHHHH--------------------HHhhccccchHHHHHH-----------HHHHHHHHHhcchhHHHHHHHHHHH
Confidence 88854332 111 11111 123 6677788899999999999987664
Q ss_pred C-----C-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH----HCCC-CCC-cccHHHHHHHHHhCCChhHHHHHHHH
Q 002846 381 D-----E-VPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMK----SLGI-NPR-LRSYGPALSVFCNNGDVDKACSVEEH 447 (874)
Q Consensus 381 ~-----G-v~Pd-~~tyn~LI~~~~~~G~~d~A~~l~~~M~----~~Gi-~Pd-~~tYn~LI~a~~k~G~~~~A~~l~~e 447 (874)
. | ..+. -..++-|-..|.+.++.++|.++|.+-. ..|. .|+ ..+|..|...|-..|++++|.++.+.
T Consensus 396 ~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~ 475 (508)
T KOG1840|consen 396 ILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEK 475 (508)
T ss_pred HHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 2 1 1232 4567888999999999999999998643 3332 133 46888899999999999999999887
Q ss_pred HH
Q 002846 448 ML 449 (874)
Q Consensus 448 M~ 449 (874)
..
T Consensus 476 ~~ 477 (508)
T KOG1840|consen 476 VL 477 (508)
T ss_pred HH
Confidence 65
No 58
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.14 E-value=0.26 Score=58.44 Aligned_cols=277 Identities=13% Similarity=0.098 Sum_probs=173.2
Q ss_pred hHHHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002846 157 NQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQF-QLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYL 235 (874)
Q Consensus 157 ~~~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~-tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a 235 (874)
++-+...|+.+.|++.+++-.. .-+|.. .+-..-..+.+.|+.++|..+|..+.+.+ |+-+.|-..|..
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~--------~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~ 80 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEK--------QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEE 80 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhh--------hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHH
Confidence 3456788999999999987522 223334 44555678889999999999999999875 666666655555
Q ss_pred HHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCC--chhhhHhhhcCcccChhhhhcCCh-HHHHHHHHHHHH
Q 002846 236 CSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRF-DDLDSTFNEKEN 312 (874)
Q Consensus 236 ~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~--d~vtyn~LI~~~~~~~~~~~~g~~-e~A~~lf~eM~~ 312 (874)
|..... .-.....+....+++ ++... .+ +.+-.-.|. +.....+ ..+...+..+..
T Consensus 81 ~~g~~~----~~~~~~~~~~~~~y~-------~l~~~--yp~s~~~~rl~L~--------~~~g~~F~~~~~~yl~~~l~ 139 (517)
T PF12569_consen 81 ALGLQL----QLSDEDVEKLLELYD-------ELAEK--YPRSDAPRRLPLD--------FLEGDEFKERLDEYLRPQLR 139 (517)
T ss_pred HHhhhc----ccccccHHHHHHHHH-------HHHHh--CccccchhHhhcc--------cCCHHHHHHHHHHHHHHHHh
Confidence 541110 001234556666664 33332 12 112122221 1121223 345566677778
Q ss_pred cCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHC----C------
Q 002846 313 LGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD----E------ 382 (874)
Q Consensus 313 ~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~----G------ 382 (874)
+|+.+ . | +.|-.-|....+.+-..+++..+... |
T Consensus 140 KgvPs-l--F---------------------------------~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~ 183 (517)
T PF12569_consen 140 KGVPS-L--F---------------------------------SNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGD 183 (517)
T ss_pred cCCch-H--H---------------------------------HHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCcc
Confidence 88532 1 1 33444444444444455555554432 1
Q ss_pred ----CCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC
Q 002846 383 ----VPMNEA--SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP 455 (874)
Q Consensus 383 ----v~Pd~~--tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd-~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~P 455 (874)
-.|... ++.-|...|-..|+.++|++.+++-.+. .|. +.-|..--..|-+.|++++|.+.+++...... -
T Consensus 184 ~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~ 260 (517)
T PF12569_consen 184 DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-A 260 (517)
T ss_pred ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-h
Confidence 124443 4455677788999999999999988776 466 45666666778899999999999999877431 3
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCChhHHHHHHHHHh
Q 002846 456 EEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFN 503 (874)
Q Consensus 456 d~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~T~~~I~~~~~ 503 (874)
|-..=+-....+.++|++++|..++........++..+...+=..||.
T Consensus 261 DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~ 308 (517)
T PF12569_consen 261 DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFE 308 (517)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHH
Confidence 556666777888999999999999999988744344444444444554
No 59
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.13 E-value=0.0021 Score=73.69 Aligned_cols=115 Identities=16% Similarity=0.187 Sum_probs=98.4
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLD--EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~--Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~ 433 (874)
.++++.+....+++.+.+++.+.+.. ....-..|..++|+.|.+.|..+.|..+++.=...|+-||..|||.||+.+.
T Consensus 70 d~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl 149 (429)
T PF10037_consen 70 DIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFL 149 (429)
T ss_pred HHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHh
Confidence 66777777777888999998888865 3323345567999999999999999999999889999999999999999999
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 002846 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA 470 (874)
Q Consensus 434 k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~ 470 (874)
+.|++..|.+|..+|...+...+..|+.--+.+|.+.
T Consensus 150 ~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 150 KKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999998888888888888887766
No 60
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.10 E-value=0.0029 Score=65.32 Aligned_cols=101 Identities=18% Similarity=0.298 Sum_probs=83.8
Q ss_pred CCCHHHHHHHHHHHHh-----cCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCC----------------ChhHHH
Q 002846 384 PMNEASLTAVGRMAMS-----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG----------------DVDKAC 442 (874)
Q Consensus 384 ~Pd~~tyn~LI~~~~~-----~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G----------------~~~~A~ 442 (874)
..|-.+|..+|+.|.+ .|.++-....++.|.+-|+.-|+.+|+.||+.+=+.. +-+-|.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4588999999999985 4789999999999999999999999999999887642 336789
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHH
Q 002846 443 SVEEHMLEHGVYPEEPELEALLRVSVEAGKG-DRVYYLLHKLR 484 (874)
Q Consensus 443 ~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~-d~A~~ll~~M~ 484 (874)
+|+++|...||.||..|+..|++.+.+.+.. .+..+++--|.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP 166 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887763 34444444443
No 61
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.07 E-value=0.0039 Score=57.91 Aligned_cols=80 Identities=8% Similarity=0.023 Sum_probs=68.7
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------ChhHHHHHHHHHHHCCCCCCcccHH
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEV-PMNEASLTAVGRMAMSMG--------DGDMAFDMVKRMKSLGINPRLRSYG 426 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv-~Pd~~tyn~LI~~~~~~G--------~~d~A~~l~~~M~~~Gi~Pd~~tYn 426 (874)
...|..+...+++.....+|+.+++.|+ .|++.+|+.++++.++.. ++-.++.++..|...+++|+..||+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456666677999999999999999999 999999999999998743 3446788999999999999999999
Q ss_pred HHHHHHHhC
Q 002846 427 PALSVFCNN 435 (874)
Q Consensus 427 ~LI~a~~k~ 435 (874)
.+|..+.+.
T Consensus 109 ivl~~Llkg 117 (120)
T PF08579_consen 109 IVLGSLLKG 117 (120)
T ss_pred HHHHHHHHh
Confidence 999988653
No 62
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.91 E-value=0.011 Score=67.99 Aligned_cols=131 Identities=13% Similarity=0.146 Sum_probs=107.7
Q ss_pred HHHHHHH---CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCcccHHHHHHHHHhCCChhHHHHHHHHH
Q 002846 374 IYEKMCL---DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL--GINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (874)
Q Consensus 374 lf~~M~~---~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~--Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM 448 (874)
++..|.. .+..-+......+++.+....+++++..++-..+.. ...-...|..++|..|.+.|..++|.+++..=
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~ 129 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR 129 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence 4555543 355668889999999999999999999999888765 23233456679999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCChhHHHH-HHHHHhc
Q 002846 449 LEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKWFNS 504 (874)
Q Consensus 449 ~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~T~~~-I~~~~~s 504 (874)
...|+-||..|||.||+.+.+.|++..|.++...|......-.|.|+.. +..+++-
T Consensus 130 ~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 130 LQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999988765666677766 5554443
No 63
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=96.81 E-value=0.29 Score=59.65 Aligned_cols=293 Identities=14% Similarity=0.090 Sum_probs=163.4
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 002846 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (874)
Q Consensus 160 ~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~ 239 (874)
..+.++...|.-.|.+.++... ++.-.+--=+..|-+.|+...|..-|.+|....=..|-.-+-.+|...++.
T Consensus 217 s~~~~~i~qA~~cy~rAI~~~p-------~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~ 289 (895)
T KOG2076|consen 217 SEQLGNINQARYCYSRAIQANP-------SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHY 289 (895)
T ss_pred HHhcccHHHHHHHHHHHHhcCC-------cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHH
Confidence 3444555566666666544221 111222222345667788888888888877543222333333444433311
Q ss_pred ccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCe
Q 002846 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG 319 (874)
Q Consensus 240 ~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~ 319 (874)
|-..+..+.|...+. .-.....+....-.+|++... |.+..+++.|.....++..+...+|.
T Consensus 290 ------~~~~~~~e~a~~~le------~~~s~~~~~~~~ed~ni~ael------~l~~~q~d~~~~~i~~~~~r~~e~d~ 351 (895)
T KOG2076|consen 290 ------FITHNERERAAKALE------GALSKEKDEASLEDLNILAEL------FLKNKQSDKALMKIVDDRNRESEKDD 351 (895)
T ss_pred ------HHHhhHHHHHHHHHH------HHHhhccccccccHHHHHHHH------HHHhHHHHHhhHHHHHHhccccCCCh
Confidence 113444577777774 111111112234457777777 99999999999999999885555544
Q ss_pred eee----------------------c--------------cccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHH
Q 002846 320 HMK----------------------L--------------NSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDA 363 (874)
Q Consensus 320 ~ty----------------------~--------------~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~ 363 (874)
.-+ . .+...+++.-|..- .+ -|......-.--+..+|.
T Consensus 352 ~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~-~n-----~~~~d~~dL~~d~a~al~ 425 (895)
T KOG2076|consen 352 SEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVE-DN-----VWVSDDVDLYLDLADALT 425 (895)
T ss_pred hhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHH-hc-----CChhhhHHHHHHHHHHHH
Confidence 333 1 11111111111110 00 011111111144557778
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhCCChhHHH
Q 002846 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKAC 442 (874)
Q Consensus 364 k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd-~~tYn~LI~a~~k~G~~~~A~ 442 (874)
..|++.+|+++|..+...-.--+.+.|--+-++|-..|..++|.+.++..... .|+ .-.--+|=.-+-+.|+.++|.
T Consensus 426 ~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~Ekal 503 (895)
T KOG2076|consen 426 NIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKAL 503 (895)
T ss_pred hcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHH
Confidence 88888888888888887655556778888888888888888888888877654 343 222233444556778888888
Q ss_pred HHHHHHH--------HcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 002846 443 SVEEHML--------EHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (874)
Q Consensus 443 ~l~~eM~--------~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~ 485 (874)
+.+..|. ..+..|+....--..+.+...|+.++-......|..
T Consensus 504 EtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 504 ETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred HHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 8887753 233455555555555666677776665444444443
No 64
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.76 E-value=0.44 Score=53.38 Aligned_cols=248 Identities=14% Similarity=0.034 Sum_probs=152.2
Q ss_pred HHHHHHHHH--cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhc
Q 002846 195 RVELDMCSK--RGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS 272 (874)
Q Consensus 195 n~LI~a~~k--~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~ 272 (874)
..++.+..+ .|++..|.++..+-.+.+-.| +.+.++.+-+- . ..|+.+++-..+. +..+.
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p---~l~~l~aA~AA-~-------qrgd~~~an~yL~-------eaae~ 147 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP---VLAYLLAAEAA-Q-------QRGDEDRANRYLA-------EAAEL 147 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcch---HHHHHHHHHHH-H-------hcccHHHHHHHHH-------HHhcc
Confidence 345555544 588888888888877766554 34444444431 1 5677777777774 22221
Q ss_pred CCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccC
Q 002846 273 RDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQ 352 (874)
Q Consensus 273 ~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~ 352 (874)
.|=.+...+=+.-.- ....|+...|..-+++..+.+-. +...-
T Consensus 148 ~~~~~l~v~ltrarl------ll~~~d~~aA~~~v~~ll~~~pr-----------------------~~~vl-------- 190 (400)
T COG3071 148 AGDDTLAVELTRARL------LLNRRDYPAARENVDQLLEMTPR-----------------------HPEVL-------- 190 (400)
T ss_pred CCCchHHHHHHHHHH------HHhCCCchhHHHHHHHHHHhCcC-----------------------ChHHH--------
Confidence 111122223333333 55667777777666666554321 11122
Q ss_pred CccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccH
Q 002846 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE-------ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY 425 (874)
Q Consensus 353 ~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~-------~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tY 425 (874)
......|.+.|++.....+...|.+.|+--|+ .+|+.+++-....+..+.-...++..... .+-+...-
T Consensus 191 ---rLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~ 266 (400)
T COG3071 191 ---RLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELV 266 (400)
T ss_pred ---HHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHH
Confidence 67788999999999999999999998876553 46777777777766666656666655433 33344455
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH------------------------------HHHHHHHHHHHhcCCchH
Q 002846 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPEE------------------------------PELEALLRVSVEAGKGDR 475 (874)
Q Consensus 426 n~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~------------------------------~ty~~LI~~~~~~G~~d~ 475 (874)
.+++.-+.++|+.++|.++..+-.+++..|+. -.+.+|=..|.+++.+.+
T Consensus 267 ~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~k 346 (400)
T COG3071 267 VAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGK 346 (400)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHH
Confidence 56677777777777777777666555444432 334555555667777777
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHh
Q 002846 476 VYYLLHKLRTSVRKVSPSTADVIAKWFN 503 (874)
Q Consensus 476 A~~ll~~M~~~~~~~sp~T~~~I~~~~~ 503 (874)
|...|+.-.+. .++.++|+.+-..+.
T Consensus 347 A~~~leaAl~~--~~s~~~~~~la~~~~ 372 (400)
T COG3071 347 ASEALEAALKL--RPSASDYAELADALD 372 (400)
T ss_pred HHHHHHHHHhc--CCChhhHHHHHHHHH
Confidence 77777766655 666667766554444
No 65
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.75 E-value=0.23 Score=54.20 Aligned_cols=260 Identities=11% Similarity=-0.009 Sum_probs=171.0
Q ss_pred CChhHHHHHHHHHhh---CCCCCCCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 002846 164 TNDSGQYKVRGITDE---KGSKKSKKDRSEQFQL-RVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (874)
Q Consensus 164 ~~~~~A~~vf~eM~~---~g~k~~~g~~Pd~~ty-n~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~ 239 (874)
.++..|..+..+..+ .+.....+..-| .=| +-|=..|.+-|.+.+|...|..-... .|-+.||-.|-++|.
T Consensus 193 nDv~~aH~~~~~~~~~~~a~~s~~~~~~~d-wwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~-- 267 (478)
T KOG1129|consen 193 NDVQKAHSLCQAVLEVERAKPSGSTGCTLD-WWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQ-- 267 (478)
T ss_pred hhHHHHHHHHHHHHHHHhccccccccchHh-HHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHH--
Confidence 444455544444322 222223333333 334 45556788999999999999887765 455678888888888
Q ss_pred ccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCe
Q 002846 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG 319 (874)
Q Consensus 240 ~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~ 319 (874)
+..+.+.|+.+|. +-.+ .++-.|||-.=+.- .+-..++.++|.+++.+..+.. |
T Consensus 268 --------ridQP~~AL~~~~-------~gld--~fP~~VT~l~g~AR-----i~eam~~~~~a~~lYk~vlk~~--~-- 321 (478)
T KOG1129|consen 268 --------RIDQPERALLVIG-------EGLD--SFPFDVTYLLGQAR-----IHEAMEQQEDALQLYKLVLKLH--P-- 321 (478)
T ss_pred --------HhccHHHHHHHHh-------hhhh--cCCchhhhhhhhHH-----HHHHHHhHHHHHHHHHHHHhcC--C--
Confidence 7788889999985 2222 12234554222111 0333455666666666554431 1
Q ss_pred eeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 002846 320 HMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS 399 (874)
Q Consensus 320 ~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~ 399 (874)
-|+-.. .++-.+|.-.++.+-|+..+..+...|+. +...|+.+--+|.-
T Consensus 322 -------------------~nvEai-----------Acia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~y 370 (478)
T KOG1129|consen 322 -------------------INVEAI-----------ACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLY 370 (478)
T ss_pred -------------------ccceee-----------eeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHh
Confidence 122222 56667788889999999999999999965 55677777778888
Q ss_pred cCChhHHHHHHHHHHHCCCCCCcc--cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHH
Q 002846 400 MGDGDMAFDMVKRMKSLGINPRLR--SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVY 477 (874)
Q Consensus 400 ~G~~d~A~~l~~~M~~~Gi~Pd~~--tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~ 477 (874)
.+++|.++--|.+-...--.|+.. +|-.|=.-....||+..|.+.|.-...+. .-+...||-|--.-.+.|++++|.
T Consensus 371 aqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Ar 449 (478)
T KOG1129|consen 371 AQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGAR 449 (478)
T ss_pred hcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHH
Confidence 999999999998877654445432 23224444456799999999998877654 234567777766678999999999
Q ss_pred HHHHHHHhc
Q 002846 478 YLLHKLRTS 486 (874)
Q Consensus 478 ~ll~~M~~~ 486 (874)
.+++.-.+.
T Consensus 450 sll~~A~s~ 458 (478)
T KOG1129|consen 450 SLLNAAKSV 458 (478)
T ss_pred HHHHHhhhh
Confidence 999887654
No 66
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.66 E-value=0.26 Score=58.43 Aligned_cols=270 Identities=10% Similarity=0.015 Sum_probs=164.4
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHH-Hc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 002846 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCS-KR-----GDVMGAIRLYDKAQREGIKLGQYHYNVL 232 (874)
Q Consensus 159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~-k~-----G~~~~Al~lf~~M~~~Gi~pd~~tyn~L 232 (874)
.+.+.|+.++|..++..++..+ |+-..|-..+..+. -. .+.+...++|+++...- |-....-.+
T Consensus 47 ll~kLg~~~eA~~~y~~Li~rN--------Pdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl 116 (517)
T PF12569_consen 47 LLLKLGRKEEAEKIYRELIDRN--------PDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRL 116 (517)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhC--ccccchhHh
Confidence 5678899999999999996643 34366655554444 22 35778889999886432 322221111
Q ss_pred HHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHH
Q 002846 233 LYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKEN 312 (874)
Q Consensus 233 L~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~ 312 (874)
.=.+. ....+......+- +.+..+ ||+..+ +.|-.- |......+-..+++.++..
T Consensus 117 ~L~~~----------~g~~F~~~~~~yl------~~~l~K-gvPslF--~~lk~L------y~d~~K~~~i~~l~~~~~~ 171 (517)
T PF12569_consen 117 PLDFL----------EGDEFKERLDEYL------RPQLRK-GVPSLF--SNLKPL------YKDPEKAAIIESLVEEYVN 171 (517)
T ss_pred hcccC----------CHHHHHHHHHHHH------HHHHhc-CCchHH--HHHHHH------HcChhHHHHHHHHHHHHHH
Confidence 11111 1112222222221 234444 776433 222222 5555556666666666654
Q ss_pred cCCCCCeeeeccccHHHHHHhhhcC--CCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHH
Q 002846 313 LGQFSNGHMKLNSQLLDGRSNLERG--PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN-EAS 389 (874)
Q Consensus 313 ~Gi~Pd~~ty~~g~~~eA~~l~~~m--~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd-~~t 389 (874)
..-....... +. ..- .|....| . ...+-..|-..|+.++|+++.++-.+. .|+ +-.
T Consensus 172 ~l~~~~~~~~--~~--------~~~~~~p~~~lw---~------~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~el 230 (517)
T PF12569_consen 172 SLESNGSFSN--GD--------DEEKEPPSTLLW---T------LYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVEL 230 (517)
T ss_pred hhcccCCCCC--cc--------ccccCCchHHHH---H------HHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHH
Confidence 3211000000 00 000 2222222 0 033345577899999999999988876 355 668
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHH--------H
Q 002846 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL--------E 461 (874)
Q Consensus 390 yn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty--------~ 461 (874)
|.+-.+.+-+.|++++|.+.++.-+.... -|...-+-....+.++|++++|.+++......+..|-...+ .
T Consensus 231 y~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~ 309 (517)
T PF12569_consen 231 YMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFET 309 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHH
Confidence 88999999999999999999999887754 46677777889999999999999999999887764433222 2
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHh
Q 002846 462 ALLRVSVEAGKGDRVYYLLHKLRT 485 (874)
Q Consensus 462 ~LI~~~~~~G~~d~A~~ll~~M~~ 485 (874)
..-.+|.+.|++..|+..|+.+.+
T Consensus 310 e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 310 ECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 334567788998888777666544
No 67
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.8 Score=52.27 Aligned_cols=219 Identities=13% Similarity=0.051 Sum_probs=158.8
Q ss_pred HHcCCHHHHHHHHHHHHHcC-CC-CCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchh
Q 002846 202 SKRGDVMGAIRLYDKAQREG-IK-LGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNG 279 (874)
Q Consensus 202 ~k~G~~~~Al~lf~~M~~~G-i~-pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~v 279 (874)
-...|+++|+.+|++..+.. .+ -|..+|+-+|..--. ++.-.--|..++. .++. -.-
T Consensus 273 y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~---------~skLs~LA~~v~~---------idKy---R~E 331 (559)
T KOG1155|consen 273 YNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND---------KSKLSYLAQNVSN---------IDKY---RPE 331 (559)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh---------hHHHHHHHHHHHH---------hccC---Ccc
Confidence 34578999999999998763 22 356788888866552 1111112333332 1110 123
Q ss_pred hhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHH
Q 002846 280 QLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRL 359 (874)
Q Consensus 280 tyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI 359 (874)
|+.++-+- |+-.++.+.|...|..-.+.. |.. ...| +.|=
T Consensus 332 TCCiIaNY------YSlr~eHEKAv~YFkRALkLN--p~~---------------------~~aW-----------TLmG 371 (559)
T KOG1155|consen 332 TCCIIANY------YSLRSEHEKAVMYFKRALKLN--PKY---------------------LSAW-----------TLMG 371 (559)
T ss_pred ceeeehhH------HHHHHhHHHHHHHHHHHHhcC--cch---------------------hHHH-----------HHhh
Confidence 34444444 677777888888888766653 111 1223 5555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CcccHHHHHHHHHhCCCh
Q 002846 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDV 438 (874)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~P-d~~tYn~LI~a~~k~G~~ 438 (874)
+.|....+...|.+-++.-.+-. +.|-..|=.|=.+|.-.+.+.-|+-.|++-... +| |.+.|.+|=.+|.+.+++
T Consensus 372 HEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~ 448 (559)
T KOG1155|consen 372 HEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL--KPNDSRLWVALGECYEKLNRL 448 (559)
T ss_pred HHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhccH
Confidence 88888889999999998887654 568889999999999999999999999886654 45 689999999999999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 002846 439 DKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (874)
Q Consensus 439 ~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~ 485 (874)
++|...|.....-|=. +...|..|-+.|-+-++..+|...|.+-.+
T Consensus 449 ~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 449 EEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999998876533 567888999999999999999998877665
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=96.49 E-value=0.56 Score=51.67 Aligned_cols=218 Identities=11% Similarity=-0.047 Sum_probs=137.5
Q ss_pred cCCHHHHHHHHHHHHHc-CCCCCH--HHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhh
Q 002846 204 RGDVMGAIRLYDKAQRE-GIKLGQ--YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQ 280 (874)
Q Consensus 204 ~G~~~~Al~lf~~M~~~-Gi~pd~--~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vt 280 (874)
.+..+.++.-+.++... .+.|+. ..|..+=..+. ..|+.++|...|. +.... ...+...
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~----------~~g~~~~A~~~~~-------~Al~l-~P~~~~a 100 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYD----------SLGLRALARNDFS-------QALAL-RPDMADA 100 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHH----------HCCCHHHHHHHHH-------HHHHc-CCCCHHH
Confidence 45567778888887743 233332 22333333344 6788889988885 33332 2225566
Q ss_pred hHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHH
Q 002846 281 LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLS 360 (874)
Q Consensus 281 yn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~ 360 (874)
|+.+-.. +...|++++|...|+...+. .|+.. ..| .-+-.
T Consensus 101 ~~~lg~~------~~~~g~~~~A~~~~~~Al~l--~P~~~---------------------~a~-----------~~lg~ 140 (296)
T PRK11189 101 YNYLGIY------LTQAGNFDAAYEAFDSVLEL--DPTYN---------------------YAY-----------LNRGI 140 (296)
T ss_pred HHHHHHH------HHHCCCHHHHHHHHHHHHHh--CCCCH---------------------HHH-----------HHHHH
Confidence 8877777 88999999999999888764 33321 112 44555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhH
Q 002846 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK 440 (874)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~ 440 (874)
.+...|+.++|.+.|+...... |+..........+...++.++|...|.+.... ..|+...+ .+ .....|+..+
T Consensus 141 ~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~~~~~~~~-~~--~~~~lg~~~~ 214 (296)
T PRK11189 141 ALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK-LDKEQWGW-NI--VEFYLGKISE 214 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-CCccccHH-HH--HHHHccCCCH
Confidence 6678899999999999888753 54332233333345678899999999775533 23443222 22 2233566655
Q ss_pred HHHHHHHHHHc---CC--CC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 441 ACSVEEHMLEH---GV--YP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 441 A~~l~~eM~~~---Gv--~P-d~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
+ +.+..+.+. .+ .| ....|..|-..+.+.|+.++|...|++..+.
T Consensus 215 ~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 215 E-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred H-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4 355555432 11 11 2356888888899999999999999998876
No 69
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.43 E-value=0.049 Score=62.26 Aligned_cols=121 Identities=13% Similarity=0.126 Sum_probs=96.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CcccHHHHHHHHHhCC
Q 002846 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNG 436 (874)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~P-d~~tYn~LI~a~~k~G 436 (874)
|+..+...++++.|.++|+++.... |+. ...|++.+...++-.+|.+++++.... .| +......-...|.+.+
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcC
Confidence 3444555789999999999999885 664 445888888899999999999988855 23 3333333445577899
Q ss_pred ChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 437 DVDKACSVEEHMLEHGVYPEEP-ELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 437 ~~~~A~~l~~eM~~~Gv~Pd~~-ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
+.+.|..+.+.+... .|+.. +|..|..+|...|+++.|+..++.|.-.
T Consensus 249 ~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 249 KYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred CHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 999999999999884 47665 9999999999999999999999988754
No 70
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.41 E-value=1.2 Score=49.87 Aligned_cols=229 Identities=11% Similarity=-0.028 Sum_probs=125.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCC-ch
Q 002846 200 MCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NN 278 (874)
Q Consensus 200 a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~-d~ 278 (874)
.+...|++++|..++++..+.. +-|...+.. ...+...+ ...+....+...+. . ... ..+ ..
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~------~~~~~~~~~~~~l~-------~-~~~-~~~~~~ 114 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLG------DFSGMRDHVARVLP-------L-WAP-ENPDYW 114 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhc------ccccCchhHHHHHh-------c-cCc-CCCCcH
Confidence 4567889999999999887642 223333332 11111110 03455556666653 1 110 111 22
Q ss_pred hhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCe-eeeccccHHHHHHhhhcCCCCcccccccccccCCccch
Q 002846 279 GQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG-HMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEI 357 (874)
Q Consensus 279 vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~-~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~ 357 (874)
.....+-.. +...|++++|...+++..... |+. ..+ ..
T Consensus 115 ~~~~~~a~~------~~~~G~~~~A~~~~~~al~~~--p~~~~~~---------------------------------~~ 153 (355)
T cd05804 115 YLLGMLAFG------LEEAGQYDRAEEAARRALELN--PDDAWAV---------------------------------HA 153 (355)
T ss_pred HHHHHHHHH------HHHcCCHHHHHHHHHHHHhhC--CCCcHHH---------------------------------HH
Confidence 223333334 678899999999999988764 444 334 55
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCcccH-H--HHHH
Q 002846 358 RLSEDAKKYAFQRGFEIYEKMCLDEV-PMNE--ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI-NPRLRSY-G--PALS 430 (874)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~Gv-~Pd~--~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi-~Pd~~tY-n--~LI~ 430 (874)
+-..+...|++++|..++++.....- .|+. ..|-.+...+...|+.++|..++++...... .+..... + .++.
T Consensus 154 la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 233 (355)
T cd05804 154 VAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLW 233 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHH
Confidence 56677778888888888887665421 2333 3466777888888888888888888643321 1111111 1 2333
Q ss_pred HHHhCCChhHHHHH--HHHHHHcCCCCCHHHH--HHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 431 VFCNNGDVDKACSV--EEHMLEHGVYPEEPEL--EALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 431 a~~k~G~~~~A~~l--~~eM~~~Gv~Pd~~ty--~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
-+-..|....+.+. ...............+ .....++...|+.++|..++..+...
T Consensus 234 ~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 234 RLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred HHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 33444544333333 2111111111111222 24555667778888888888887664
No 71
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.41 E-value=0.045 Score=60.20 Aligned_cols=126 Identities=15% Similarity=0.109 Sum_probs=94.0
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSV 431 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~----~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a 431 (874)
...|..|.+.++++.|...++.|.+.. +..+.+-|..++.. ...+.+|+-+|++|... ..++..+.|.+..+
T Consensus 135 al~Vqi~L~~~R~dlA~k~l~~~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~ 210 (290)
T PF04733_consen 135 ALAVQILLKMNRPDLAEKELKNMQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVC 210 (290)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHH
Confidence 567889999999999999999999764 33455555555543 34699999999998665 66788888888889
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHhc
Q 002846 432 FCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG-DRVYYLLHKLRTS 486 (874)
Q Consensus 432 ~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~-d~A~~ll~~M~~~ 486 (874)
+...|++++|.+++.+..... .-+..+...+|-.....|+. +.+.+++.+++..
T Consensus 211 ~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 211 HLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 999999999999999876543 23556666777777777887 6788899998876
No 72
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.39 E-value=0.19 Score=56.46 Aligned_cols=124 Identities=12% Similarity=0.106 Sum_probs=96.5
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHH-h
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC-N 434 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~-k 434 (874)
+-|-+-|-+.|+-..|++.+-+-. +-++.|..|..-|..-|....-+++|+..|+... =++|+..-|-.+|..|. +
T Consensus 596 skl~dlydqegdksqafq~~ydsy-ryfp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSY-RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQSKWQLMIASCFRR 672 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhcc-cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccHHHHHHHHHHHHHh
Confidence 556677778899999988775533 2456788899999999999999999999998754 36899999999997766 6
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 002846 435 NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (874)
Q Consensus 435 ~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~ 484 (874)
.|+..+|++++..... .+.-|.....-|++.+...|. .++.++-+++.
T Consensus 673 sgnyqka~d~yk~~hr-kfpedldclkflvri~~dlgl-~d~key~~kle 720 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDLGL-KDAKEYADKLE 720 (840)
T ss_pred cccHHHHHHHHHHHHH-hCccchHHHHHHHHHhccccc-hhHHHHHHHHH
Confidence 7999999999999765 466788888888888877774 34444444443
No 73
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.35 E-value=0.68 Score=51.75 Aligned_cols=229 Identities=12% Similarity=-0.008 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhh
Q 002846 193 QLRVELDMCSKRGDVMGAIRLYDKAQREG-IKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (874)
Q Consensus 193 tyn~LI~a~~k~G~~~~Al~lf~~M~~~G-i~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~ 271 (874)
.|..+-..+...|+.+.|...+....+.. -.++...-.. +.+.... ..|+.++|...+. +..+
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~~a~~~~--------~~g~~~~A~~~~~-------~~l~ 71 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAH-VEALSAW--------IAGDLPKALALLE-------QLLD 71 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHH-HHHHHHH--------HcCCHHHHHHHHH-------HHHH
Confidence 44455555666677777766666655322 2234333322 2333211 5689999999884 4333
Q ss_pred cCCCCchhhhHh---hhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccc
Q 002846 272 SRDMDNNGQLDY---GSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWS 348 (874)
Q Consensus 272 ~~gi~d~vtyn~---LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~ 348 (874)
. .-.|...++. .... .-..+..+.+.+.+.. .....|+.... .
T Consensus 72 ~-~P~~~~a~~~~~~~~~~------~~~~~~~~~~~~~l~~--~~~~~~~~~~~---------------------~---- 117 (355)
T cd05804 72 D-YPRDLLALKLHLGAFGL------GDFSGMRDHVARVLPL--WAPENPDYWYL---------------------L---- 117 (355)
T ss_pred H-CCCcHHHHHHhHHHHHh------cccccCchhHHHHHhc--cCcCCCCcHHH---------------------H----
Confidence 2 2224444442 1111 1224555666665554 22223332211 0
Q ss_pred cccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCc--ccH
Q 002846 349 IDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI-NPRL--RSY 425 (874)
Q Consensus 349 i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi-~Pd~--~tY 425 (874)
..+-..+...|++++|...+++..... +.+...+..+-..+...|++++|..++++.....- .|+. ..|
T Consensus 118 -------~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~ 189 (355)
T cd05804 118 -------GMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNW 189 (355)
T ss_pred -------HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHH
Confidence 233456778999999999999998865 44567889999999999999999999998776421 2333 235
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCC-CCCHHHH-H--HHHHHHHhcCCchHHHHH
Q 002846 426 GPALSVFCNNGDVDKACSVEEHMLEHGV-YPEEPEL-E--ALLRVSVEAGKGDRVYYL 479 (874)
Q Consensus 426 n~LI~a~~k~G~~~~A~~l~~eM~~~Gv-~Pd~~ty-~--~LI~~~~~~G~~d~A~~l 479 (874)
..+-..+...|+.++|..++++...... .+..... + .++.-+-..|..+.+.++
T Consensus 190 ~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w 247 (355)
T cd05804 190 WHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW 247 (355)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH
Confidence 5677888999999999999999864332 2222222 2 334444455544444433
No 74
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.32 E-value=0.017 Score=59.76 Aligned_cols=95 Identities=14% Similarity=0.055 Sum_probs=76.7
Q ss_pred chHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------------CChhHHHHHHHHHH
Q 002846 356 EIRLSEDAK-----KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM----------------GDGDMAFDMVKRMK 414 (874)
Q Consensus 356 n~lI~~~~k-----~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~----------------G~~d~A~~l~~~M~ 414 (874)
..+|+.|.+ .|.++-...-+..|.+-|+.-|..+|+.||+.+=+. .+.+-|++++++|.
T Consensus 51 ~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME 130 (228)
T PF06239_consen 51 LEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQME 130 (228)
T ss_pred HHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHH
Confidence 666666664 478888889999999999999999999999998652 24567999999999
Q ss_pred HCCCCCCcccHHHHHHHHHhCCCh-hHHHHHHHHHHH
Q 002846 415 SLGINPRLRSYGPALSVFCNNGDV-DKACSVEEHMLE 450 (874)
Q Consensus 415 ~~Gi~Pd~~tYn~LI~a~~k~G~~-~~A~~l~~eM~~ 450 (874)
..|+.||..|+..||..|.+.+.. .+..++.--|.+
T Consensus 131 ~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 131 NNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred HcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 999999999999999999887743 444445444443
No 75
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.31 E-value=0.026 Score=62.04 Aligned_cols=201 Identities=11% Similarity=0.061 Sum_probs=123.4
Q ss_pred CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCc
Q 002846 188 RSEQFQLRVELDMCSKR-GDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNS 266 (874)
Q Consensus 188 ~Pd~~tyn~LI~a~~k~-G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s 266 (874)
.|....... +..|... .+-+.++.-+.+.......++..++ .++.|..- ...|++++|+.++.
T Consensus 63 ~~~l~av~~-la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~-~~~~A~i~--------~~~~~~~~AL~~l~------ 126 (290)
T PF04733_consen 63 SPELQAVRL-LAEYLSSPSDKESALEELKELLADQAGESNEIV-QLLAATIL--------FHEGDYEEALKLLH------ 126 (290)
T ss_dssp SCCCHHHHH-HHHHHCTSTTHHCHHHHHHHCCCTS---CHHHH-HHHHHHHH--------CCCCHHHHHHCCCT------
T ss_pred ChhHHHHHH-HHHHHhCccchHHHHHHHHHHHHhccccccHHH-HHHHHHHH--------HHcCCHHHHHHHHH------
Confidence 455455544 4444444 4445555555444333333222233 34444431 26799999998885
Q ss_pred hhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccc
Q 002846 267 TELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKD 346 (874)
Q Consensus 267 ~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~ 346 (874)
...+.-.....|.. +.+.++++.|.+.+..|.+.. .|..-. +
T Consensus 127 -------~~~~lE~~al~Vqi------~L~~~R~dlA~k~l~~~~~~~--eD~~l~---q-------------------- 168 (290)
T PF04733_consen 127 -------KGGSLELLALAVQI------LLKMNRPDLAEKELKNMQQID--EDSILT---Q-------------------- 168 (290)
T ss_dssp -------TTTCHHHHHHHHHH------HHHTT-HHHHHHHHHHHHCCS--CCHHHH---H--------------------
T ss_pred -------ccCcccHHHHHHHH------HHHcCCHHHHHHHHHHHHhcC--CcHHHH---H--------------------
Confidence 12233334455666 889999999999999998753 222211 0
Q ss_pred cccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHH
Q 002846 347 WSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426 (874)
Q Consensus 347 w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn 426 (874)
-..++|+...-...+.+|+.+|++|.+. ..++..+.|.+..++...|++++|.+++.+.....- -+..+..
T Consensus 169 -------La~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~La 239 (290)
T PF04733_consen 169 -------LAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLA 239 (290)
T ss_dssp -------HHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHH
T ss_pred -------HHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHH
Confidence 0134444443345799999999998765 568899999999999999999999999998654321 1234455
Q ss_pred HHHHHHHhCCCh-hHHHHHHHHHHHc
Q 002846 427 PALSVFCNNGDV-DKACSVEEHMLEH 451 (874)
Q Consensus 427 ~LI~a~~k~G~~-~~A~~l~~eM~~~ 451 (874)
.+|......|+. +.+.+.+.++...
T Consensus 240 Nliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 240 NLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 567766777777 6788888888764
No 76
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=96.01 E-value=1.2 Score=54.62 Aligned_cols=252 Identities=10% Similarity=0.041 Sum_probs=156.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCC-c
Q 002846 199 DMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-N 277 (874)
Q Consensus 199 ~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~-d 277 (874)
..+++ |++++|..++.+.++.. +.+...|-+|=..|- ..|+.+++...+- ....-.+ |
T Consensus 148 ~lfar-g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyE----------qrGd~eK~l~~~l---------lAAHL~p~d 206 (895)
T KOG2076|consen 148 NLFAR-GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYE----------QRGDIEKALNFWL---------LAAHLNPKD 206 (895)
T ss_pred HHHHh-CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHH----------HcccHHHHHHHHH---------HHHhcCCCC
Confidence 34555 99999999999998653 345567777777776 6688888887763 1111111 3
Q ss_pred hhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeec---------cccHHHHHHhhhcC---CC-Ccccc
Q 002846 278 NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL---------NSQLLDGRSNLERG---PD-DQSRK 344 (874)
Q Consensus 278 ~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~---------~g~~~eA~~l~~~m---~p-d~~ty 344 (874)
.--|-.+-.- ..+.|.++.|.-.|.+-... .|..+-|- .|....|+.-|.++ .| +.+-+
T Consensus 207 ~e~W~~ladl------s~~~~~i~qA~~cy~rAI~~--~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er 278 (895)
T KOG2076|consen 207 YELWKRLADL------SEQLGNINQARYCYSRAIQA--NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIER 278 (895)
T ss_pred hHHHHHHHHH------HHhcccHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHH
Confidence 3345555444 66677777777777776655 34444333 56667777766666 33 11111
Q ss_pred cccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-------
Q 002846 345 KDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD-EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL------- 416 (874)
Q Consensus 345 ~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~-Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~------- 416 (874)
. +...-.++..+-..++-+.|.+.++.-... +=.-+.-.+++++..|.+....+.|......+...
T Consensus 279 ---~---~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~ 352 (895)
T KOG2076|consen 279 ---I---EDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDS 352 (895)
T ss_pred ---H---HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChh
Confidence 0 000022355666666668888888766652 22345567788888888888888888888777661
Q ss_pred --------------------CCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCch
Q 002846 417 --------------------GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVY--PEEPELEALLRVSVEAGKGD 474 (874)
Q Consensus 417 --------------------Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~--Pd~~ty~~LI~~~~~~G~~d 474 (874)
++.+++.++ -+.-++......+....+..-+.+..+. -+...|--+-++|.+.|+++
T Consensus 353 e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~ 431 (895)
T KOG2076|consen 353 EWDTDERRREEPNALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYK 431 (895)
T ss_pred hhhhhhhccccccccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHH
Confidence 122333331 1233344444555555555555555533 35566777788888888888
Q ss_pred HHHHHHHHHHhc
Q 002846 475 RVYYLLHKLRTS 486 (874)
Q Consensus 475 ~A~~ll~~M~~~ 486 (874)
+|+.+|..+...
T Consensus 432 ~Al~~l~~i~~~ 443 (895)
T KOG2076|consen 432 EALRLLSPITNR 443 (895)
T ss_pred HHHHHHHHHhcC
Confidence 888888888876
No 77
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.98 E-value=0.63 Score=55.13 Aligned_cols=239 Identities=12% Similarity=0.032 Sum_probs=156.5
Q ss_pred hcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Q 002846 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDV-MGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAA 240 (874)
Q Consensus 162 k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~-~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~ 240 (874)
+..+.++|.++|+........+ .-+...|.+++--+-+.-.+ --|..+.+.+ +-.+.+|-++=++|+
T Consensus 365 El~~Y~~a~~~F~~~r~~~p~r----v~~meiyST~LWHLq~~v~Ls~Laq~Li~~~-----~~sPesWca~GNcfS--- 432 (638)
T KOG1126|consen 365 ELIEYDQAERIFSLVRRIEPYR----VKGMEIYSTTLWHLQDEVALSYLAQDLIDTD-----PNSPESWCALGNCFS--- 432 (638)
T ss_pred HHHHHHHHHHHHHHHHhhcccc----ccchhHHHHHHHHHHhhHHHHHHHHHHHhhC-----CCCcHHHHHhcchhh---
Confidence 3456778999999984422111 12346788877555433221 1233343333 234578888888888
Q ss_pred cCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCee
Q 002846 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH 320 (874)
Q Consensus 241 ~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ 320 (874)
-.++-+.|+..|. +.. -+.+.++|..-+-| .++.....+|.|..-|+.- +..|..
T Consensus 433 -------LQkdh~~Aik~f~------RAi----Qldp~faYayTLlG----hE~~~~ee~d~a~~~fr~A----l~~~~r 487 (638)
T KOG1126|consen 433 -------LQKDHDTAIKCFK------RAI----QLDPRFAYAYTLLG----HESIATEEFDKAMKSFRKA----LGVDPR 487 (638)
T ss_pred -------hhhHHHHHHHHHH------Hhh----ccCCccchhhhhcC----ChhhhhHHHHhHHHHHHhh----hcCCch
Confidence 6677888888885 211 22233444443334 4477778888888888743 445666
Q ss_pred eec-----------cccHHHHHHhhhcC---CCC-cccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 002846 321 MKL-----------NSQLLDGRSNLERG---PDD-QSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPM 385 (874)
Q Consensus 321 ty~-----------~g~~~eA~~l~~~m---~pd-~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~P 385 (874)
-|+ .++.+.|+..|... .|. .+.. ..+-..+-+.|+.++|+++|++-....- -
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~-----------~~~g~~~~~~k~~d~AL~~~~~A~~ld~-k 555 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVIL-----------CHIGRIQHQLKRKDKALQLYEKAIHLDP-K 555 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHH-----------hhhhHHHHHhhhhhHHHHHHHHHHhcCC-C
Confidence 676 67888888888876 332 2222 3333555678999999999998776542 2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 002846 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (874)
Q Consensus 386 d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd-~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~ 451 (874)
|..+-=-.+..+...++.++|+..|+++++. .|+ ...|-.+-..|-+.|+.+.|..-|.-|.+.
T Consensus 556 n~l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 556 NPLCKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred CchhHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 4444444566777889999999999999875 566 455666667888899999999888877664
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.93 E-value=1.5 Score=46.12 Aligned_cols=206 Identities=14% Similarity=0.001 Sum_probs=124.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhc
Q 002846 194 LRVELDMCSKRGDVMGAIRLYDKAQREGIKLG-QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS 272 (874)
Q Consensus 194 yn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd-~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~ 272 (874)
..-|=-+|...|+...|..-+++..+.. |+ ..+|.++-..|- +.|..+.|.+.|. .-|...
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq----------~~Ge~~~A~e~Yr------kAlsl~ 99 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQ----------KLGENDLADESYR------KALSLA 99 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHH----------HcCChhhHHHHHH------HHHhcC
Confidence 3344458999999999999999998753 44 446666666666 7788888888885 223222
Q ss_pred CCCCchhh-hHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCccccccccccc
Q 002846 273 RDMDNNGQ-LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDN 351 (874)
Q Consensus 273 ~gi~d~vt-yn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~ 351 (874)
.+-.|+.- |.+. +|..|++++|...|++-...- +...- ..||
T Consensus 100 p~~GdVLNNYG~F---------LC~qg~~~eA~q~F~~Al~~P---~Y~~~------------------s~t~------- 142 (250)
T COG3063 100 PNNGDVLNNYGAF---------LCAQGRPEEAMQQFERALADP---AYGEP------------------SDTL------- 142 (250)
T ss_pred CCccchhhhhhHH---------HHhCCChHHHHHHHHHHHhCC---CCCCc------------------chhh-------
Confidence 11113332 5444 788888888888888766541 11100 0011
Q ss_pred CCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 002846 352 QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV 431 (874)
Q Consensus 352 ~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a 431 (874)
.-+.-+..+.|+.+.|.+.|++-.+..- -...+.-.+.+...+.|+.-.|...++.....+. +...+.-..|..
T Consensus 143 ----eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iri 216 (250)
T COG3063 143 ----ENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRI 216 (250)
T ss_pred ----hhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHH
Confidence 2222233366777777777776665431 1234556666777777777777777776665544 666666656666
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 002846 432 FCNNGDVDKACSVEEHMLEHGVYPEEPELEA 462 (874)
Q Consensus 432 ~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~ 462 (874)
--+.|+.+.|.+.=..+... -|....|..
T Consensus 217 ak~~gd~~~a~~Y~~qL~r~--fP~s~e~q~ 245 (250)
T COG3063 217 AKRLGDRAAAQRYQAQLQRL--FPYSEEYQT 245 (250)
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCcHHHHh
Confidence 66667776666655555442 254444443
No 79
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=95.90 E-value=0.74 Score=56.69 Aligned_cols=299 Identities=14% Similarity=0.084 Sum_probs=188.5
Q ss_pred HHHhcCChhHHHHHHHHH----hhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCHH----
Q 002846 159 KMEQRTNDSGQYKVRGIT----DEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQRE---GIKLGQY---- 227 (874)
Q Consensus 159 ~~~k~~~~~~A~~vf~eM----~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~---Gi~pd~~---- 227 (874)
.+-..++...++.+|... ...+. . +-....|.+=..+...|++..|...|+..... -..+|..
T Consensus 422 ql~e~~d~~~sL~~~~~A~d~L~~~~~-----~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~ 495 (1018)
T KOG2002|consen 422 QLLEQTDPWASLDAYGNALDILESKGK-----Q-IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTN 495 (1018)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHcCC-----C-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccch
Confidence 444455555556555543 22221 1 33367888888889999999999999998744 2334442
Q ss_pred ---HHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhc-------
Q 002846 228 ---HYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSS------- 297 (874)
Q Consensus 228 ---tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~------- 297 (874)
-|| |..|.. ..++.+.|...+. ++... |-.-|++ |.+.
T Consensus 496 lt~~YN--larl~E---------~l~~~~~A~e~Yk-------~Ilke--------hp~YId~------ylRl~~ma~~k 543 (1018)
T KOG2002|consen 496 LTLKYN--LARLLE---------ELHDTEVAEEMYK-------SILKE--------HPGYIDA------YLRLGCMARDK 543 (1018)
T ss_pred hHHHHH--HHHHHH---------hhhhhhHHHHHHH-------HHHHH--------CchhHHH------HHHhhHHHHhc
Confidence 333 333332 3356667777774 22221 2222333 3333
Q ss_pred CChHHHHHHHHHHHH-cCCCCCeeeec------cccHHHHHHhhhcC--CCCcc--cccccccccCCccchHHHHHH---
Q 002846 298 YRFDDLDSTFNEKEN-LGQFSNGHMKL------NSQLLDGRSNLERG--PDDQS--RKKDWSIDNQDADEIRLSEDA--- 363 (874)
Q Consensus 298 g~~e~A~~lf~eM~~-~Gi~Pd~~ty~------~g~~~eA~~l~~~m--~pd~~--ty~~w~i~~~~~~n~lI~~~~--- 363 (874)
+.+.+|..++.+... ..-.|++.+|- ...+.-|..-|... .++.. +| ++. ...|..|..+.
T Consensus 544 ~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Y---sli--aLGN~~~~~l~~~~ 618 (1018)
T KOG2002|consen 544 NNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAY---SLI--ALGNVYIQALHNPS 618 (1018)
T ss_pred cCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchh---HHH--HhhHHHHHHhcccc
Confidence 455677777766544 34667777773 22233333322222 22221 22 111 11134444433
Q ss_pred -----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCCh
Q 002846 364 -----KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDV 438 (874)
Q Consensus 364 -----k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~ 438 (874)
..+..++|+++|.+..... +-|...-|-+--.++..|++.+|.++|.+..+... -..-+|-.+-+.|...|++
T Consensus 619 rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy 696 (1018)
T KOG2002|consen 619 RNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQY 696 (1018)
T ss_pred cChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHH
Confidence 2346788999999877654 45777778888889999999999999999988754 3445677788999999999
Q ss_pred hHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCChh--HHHHHHHHHhc
Q 002846 439 DKACSVEEHMLE-HGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADVIAKWFNS 504 (874)
Q Consensus 439 ~~A~~l~~eM~~-~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~--T~~~I~~~~~s 504 (874)
..|.++|+.-.+ .+-.-+......|-+++-++|.+.+|.+.+..-+.. .|+.. -+++..-.++.
T Consensus 697 ~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~--~p~~~~v~FN~a~v~kkl 763 (1018)
T KOG2002|consen 697 RLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL--APSNTSVKFNLALVLKKL 763 (1018)
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CCccchHHhHHHHHHHHH
Confidence 999999987554 455567888899999999999999999998877765 55444 35554444443
No 80
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=95.89 E-value=0.36 Score=50.76 Aligned_cols=160 Identities=12% Similarity=0.016 Sum_probs=108.9
Q ss_pred hhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHH
Q 002846 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (874)
Q Consensus 294 ~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~ 373 (874)
+-..|++++|...|++..... |+.... .+ .+ ..+-..+.+.|++++|..
T Consensus 43 ~~~~~~~~~A~~~~~~~~~~~--p~~~~~-----~~-------------a~-----------~~la~~~~~~~~~~~A~~ 91 (235)
T TIGR03302 43 ALDSGDYTEAIKYFEALESRY--PFSPYA-----EQ-------------AQ-----------LDLAYAYYKSGDYAEAIA 91 (235)
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCchhH-----HH-------------HH-----------HHHHHHHHhcCCHHHHHH
Confidence 678899999999999886652 322110 00 11 344567778899999999
Q ss_pred HHHHHHHCCCCCCHH--HHHHHHHHHHhc--------CChhHHHHHHHHHHHCCCCCCccc-HH----------------
Q 002846 374 IYEKMCLDEVPMNEA--SLTAVGRMAMSM--------GDGDMAFDMVKRMKSLGINPRLRS-YG---------------- 426 (874)
Q Consensus 374 lf~~M~~~Gv~Pd~~--tyn~LI~~~~~~--------G~~d~A~~l~~~M~~~Gi~Pd~~t-Yn---------------- 426 (874)
.|+++.+..-..... ++..+-.++... |+.++|.+.|+.+... .|+..- +.
T Consensus 92 ~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~ 169 (235)
T TIGR03302 92 AADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKE 169 (235)
T ss_pred HHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHH
Confidence 999998753211121 343344444443 7788999999988765 344321 11
Q ss_pred -HHHHHHHhCCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 427 -PALSVFCNNGDVDKACSVEEHMLEHG--VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 427 -~LI~a~~k~G~~~~A~~l~~eM~~~G--v~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
.+-..|.+.|+.++|...++...... -......+..+..++...|+.++|..+++.+..+
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 23345678899999999999987753 1223567888999999999999999999988776
No 81
>PRK11189 lipoprotein NlpI; Provisional
Probab=95.89 E-value=1.1 Score=49.27 Aligned_cols=228 Identities=11% Similarity=-0.033 Sum_probs=143.3
Q ss_pred ChhHHHHHHHHHhhCCCCCCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccC
Q 002846 165 NDSGQYKVRGITDEKGSKKSKKDRSE--QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVG 242 (874)
Q Consensus 165 ~~~~A~~vf~eM~~~g~k~~~g~~Pd--~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~ 242 (874)
..+.+..-+.++..... ..|+ ...|..+=..|.+.|+.++|+..|.+..+.. +-+...|+.+=..+.
T Consensus 41 ~~e~~i~~~~~~l~~~~-----~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~----- 109 (296)
T PRK11189 41 QQEVILARLNQILASRD-----LTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLT----- 109 (296)
T ss_pred HHHHHHHHHHHHHcccc-----CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH-----
Confidence 44556666666643221 1222 2345555567889999999999999998753 234677777777777
Q ss_pred CCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeee
Q 002846 243 VVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMK 322 (874)
Q Consensus 243 ~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty 322 (874)
..|+.++|...|+ ...+. .-.+...|..+-.. +...|++++|.+.|+.-.... |+....
T Consensus 110 -----~~g~~~~A~~~~~-------~Al~l-~P~~~~a~~~lg~~------l~~~g~~~eA~~~~~~al~~~--P~~~~~ 168 (296)
T PRK11189 110 -----QAGNFDAAYEAFD-------SVLEL-DPTYNYAYLNRGIA------LYYGGRYELAQDDLLAFYQDD--PNDPYR 168 (296)
T ss_pred -----HCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHhC--CCCHHH
Confidence 7899999999996 33221 22245566666666 778899999999999877652 322101
Q ss_pred ccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 002846 323 LNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD 402 (874)
Q Consensus 323 ~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~ 402 (874)
......+...++.++|.+.|++..... .|+... ..+. ....|+
T Consensus 169 ---------------------------------~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~-~~~~--~~~lg~ 211 (296)
T PRK11189 169 ---------------------------------ALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWG-WNIV--EFYLGK 211 (296)
T ss_pred ---------------------------------HHHHHHHHccCCHHHHHHHHHHHHhhC-CccccH-HHHH--HHHccC
Confidence 222222345678999999997755332 333222 2222 233566
Q ss_pred hhHHHHHHHHHHHCC-C----CC-CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 002846 403 GDMAFDMVKRMKSLG-I----NP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463 (874)
Q Consensus 403 ~d~A~~l~~~M~~~G-i----~P-d~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~L 463 (874)
..++ +.+..+.+.- . .| ....|..+=..+.+.|+.++|...|+...+.+ .||-+.+...
T Consensus 212 ~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~~~~ 276 (296)
T PRK11189 212 ISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFVEHRYA 276 (296)
T ss_pred CCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHHHHHH
Confidence 6554 3555554321 1 11 12467778888999999999999999988755 3465555543
No 82
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=95.69 E-value=6.7 Score=46.85 Aligned_cols=200 Identities=14% Similarity=0.049 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhh
Q 002846 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (874)
Q Consensus 192 ~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~ 271 (874)
+.|-.....+-.+||+..|..++...-+..-. +...|-+-+..-. ....+++|..+|. ..+.
T Consensus 585 ~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~----------en~e~eraR~lla-------kar~ 646 (913)
T KOG0495|consen 585 ILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEF----------ENDELERARDLLA-------KARS 646 (913)
T ss_pred hHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhh----------ccccHHHHHHHHH-------HHhc
Confidence 45555556666777888887777777654321 4455555555555 5677788888874 2222
Q ss_pred cCCCCchhh-hHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeec--ccc-------HHHHHHhhhcC---C
Q 002846 272 SRDMDNNGQ-LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL--NSQ-------LLDGRSNLERG---P 338 (874)
Q Consensus 272 ~~gi~d~vt-yn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~--~g~-------~~eA~~l~~~m---~ 338 (874)
..|-.-+.+ +-.+ .--.+.+++|.+++++-.+. .|+..-+- .|+ ++.|..-+... .
T Consensus 647 ~sgTeRv~mKs~~~---------er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c 715 (913)
T KOG0495|consen 647 ISGTERVWMKSANL---------ERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC 715 (913)
T ss_pred cCCcchhhHHHhHH---------HHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC
Confidence 212222222 2222 12246678888888766553 34433221 333 33344443333 5
Q ss_pred CCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 002846 339 DDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI 418 (874)
Q Consensus 339 pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi 418 (874)
|+.+-. | -++..---+.|.+-+|..+|+.-+.++ +-|...|-..|++=.+.|+.+.|..++.+..+. +
T Consensus 716 P~~ipL--W--------llLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-c 783 (913)
T KOG0495|consen 716 PNSIPL--W--------LLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-C 783 (913)
T ss_pred CCCchH--H--------HHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-C
Confidence 655433 1 334444456778999999999888776 457889999999999999999999888766544 3
Q ss_pred CCCcccHHHHHHHH
Q 002846 419 NPRLRSYGPALSVF 432 (874)
Q Consensus 419 ~Pd~~tYn~LI~a~ 432 (874)
+-+-.-|.-.|...
T Consensus 784 p~sg~LWaEaI~le 797 (913)
T KOG0495|consen 784 PSSGLLWAEAIWLE 797 (913)
T ss_pred CccchhHHHHHHhc
Confidence 22333344333333
No 83
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=95.54 E-value=0.33 Score=46.13 Aligned_cols=99 Identities=8% Similarity=-0.039 Sum_probs=74.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 002846 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465 (874)
Q Consensus 386 d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~ 465 (874)
+......+...+...|+.++|...|+.....+ ..+...|..+-..|.+.|+.++|..+++.....+ ..+...+..+-.
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~ 93 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAE 93 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHH
Confidence 33456667777888899999999998887653 2355666667777788899999999888877654 335566666777
Q ss_pred HHHhcCCchHHHHHHHHHHhc
Q 002846 466 VSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 466 ~~~~~G~~d~A~~ll~~M~~~ 486 (874)
.+...|+.++|...|+...+.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 788889999999999888776
No 84
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=95.50 E-value=0.38 Score=57.50 Aligned_cols=84 Identities=10% Similarity=0.119 Sum_probs=46.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHH
Q 002846 364 KKYAFQRGFEIYEKMCLDEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKAC 442 (874)
Q Consensus 364 k~g~~~~A~~lf~~M~~~Gv~Pd-~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~ 442 (874)
+.++++.|.+-|..-..- .|| ...||.+-.+|.+.++-.+|+..+.+-.+.+ .-+...|-.-+.-..+.|.+++|.
T Consensus 531 qlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~ 607 (777)
T KOG1128|consen 531 QLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAI 607 (777)
T ss_pred HHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHH
Confidence 445555666655544421 333 3456666666666666666666666665554 334444444455555666666666
Q ss_pred HHHHHHHH
Q 002846 443 SVEEHMLE 450 (874)
Q Consensus 443 ~l~~eM~~ 450 (874)
+.+..|..
T Consensus 608 ~A~~rll~ 615 (777)
T KOG1128|consen 608 KAYHRLLD 615 (777)
T ss_pred HHHHHHHH
Confidence 66655543
No 85
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=95.47 E-value=1.2 Score=46.73 Aligned_cols=60 Identities=13% Similarity=0.066 Sum_probs=48.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCC-CC-CcccHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 002846 392 AVGRMAMSMGDGDMAFDMVKRMKSLGI-NP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (874)
Q Consensus 392 ~LI~~~~~~G~~d~A~~l~~~M~~~Gi-~P-d~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~ 451 (874)
.+...+.+.|++++|...+++.....- .| ....+..+..++.+.|+.++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 456678899999999999999876521 12 2457778999999999999999999988764
No 86
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=95.43 E-value=0.16 Score=42.77 Aligned_cols=90 Identities=18% Similarity=0.163 Sum_probs=39.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 002846 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472 (874)
Q Consensus 393 LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~ 472 (874)
+...+...|++++|..++++..+.. ..+...+..+-..+...|+.++|.+.++...... ..+...+..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 3344444455555555554444331 1111333334444444455555555554444332 1122344444445555555
Q ss_pred chHHHHHHHHHH
Q 002846 473 GDRVYYLLHKLR 484 (874)
Q Consensus 473 ~d~A~~ll~~M~ 484 (874)
.++|...+....
T Consensus 84 ~~~a~~~~~~~~ 95 (100)
T cd00189 84 YEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
No 87
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=95.41 E-value=2.4 Score=52.38 Aligned_cols=288 Identities=10% Similarity=-0.006 Sum_probs=166.6
Q ss_pred hcCChhHHHHHHHHHhhC---CCCCCCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 002846 162 QRTNDSGQYKVRGITDEK---GSKKSKKDRSEQFQLRVELDMCSK-RGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCS 237 (874)
Q Consensus 162 k~~~~~~A~~vf~eM~~~---g~k~~~g~~Pd~~tyn~LI~a~~k-~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~ 237 (874)
..+.++.|...|+.-... -..++.|-.++ +|..-.+..|.. .++.+.|.++|....+.. |+-++.-.=+-+.+
T Consensus 464 ~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~-lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma 540 (1018)
T KOG2002|consen 464 RLGNIEKALEHFKSALGKLLEVANKDEGKSTN-LTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMA 540 (1018)
T ss_pred HhcChHHHHHHHHHHhhhhhhhcCccccccch-hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHH
Confidence 567888999999887443 12233332344 333334444443 468999999999988642 33222111111122
Q ss_pred hcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCC-C
Q 002846 238 SAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQ-F 316 (874)
Q Consensus 238 ~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi-~ 316 (874)
+ ..+...+|...+. +-+......+++.+ -+=+. +-+...+..|..-|......-. .
T Consensus 541 ~---------~k~~~~ea~~~lk------~~l~~d~~np~ars--l~G~~------~l~k~~~~~a~k~f~~i~~~~~~~ 597 (1018)
T KOG2002|consen 541 R---------DKNNLYEASLLLK------DALNIDSSNPNARS--LLGNL------HLKKSEWKPAKKKFETILKKTSTK 597 (1018)
T ss_pred H---------hccCcHHHHHHHH------HHHhcccCCcHHHH--HHHHH------HHhhhhhcccccHHHHHHhhhccC
Confidence 1 2355666666664 11111101112222 11112 3334444444443333322211 1
Q ss_pred CCeeeec--------------------cccHHHHHHhhhcC----CCCcccccccccccCCccchHHHHHHhcCCHHHHH
Q 002846 317 SNGHMKL--------------------NSQLLDGRSNLERG----PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGF 372 (874)
Q Consensus 317 Pd~~ty~--------------------~g~~~eA~~l~~~m----~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~ 372 (874)
+|.++.- .+..++|+.+|... ..|...- |-+=-.++.+|++.+|.
T Consensus 598 ~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAA-----------NGIgiVLA~kg~~~~A~ 666 (1018)
T KOG2002|consen 598 TDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAA-----------NGIGIVLAEKGRFSEAR 666 (1018)
T ss_pred CchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhc-----------cchhhhhhhccCchHHH
Confidence 2222211 34567777777765 2233322 44444577899999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 002846 373 EIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL-GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (874)
Q Consensus 373 ~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~-Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~ 451 (874)
+||.+.++... -+..+|-.|..+|...|++-.|.++|+...+. .-.-+..+.+.|-.++-++|.+.+|.+..-.....
T Consensus 667 dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 667 DIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 99999998753 24457888999999999999999999976654 33345666677888888899999998877665543
Q ss_pred CCCCCHHHHHHHHHHH------------------HhcCCchHHHHHHHHHHhcC
Q 002846 452 GVYPEEPELEALLRVS------------------VEAGKGDRVYYLLHKLRTSV 487 (874)
Q Consensus 452 Gv~Pd~~ty~~LI~~~------------------~~~G~~d~A~~ll~~M~~~~ 487 (874)
-..-..+.||..+-.. ...+.++.|.++|.+|...+
T Consensus 746 ~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~ 799 (1018)
T KOG2002|consen 746 APSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNG 799 (1018)
T ss_pred CCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3333445555544332 12345778999999998863
No 88
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.37 E-value=0.98 Score=47.41 Aligned_cols=144 Identities=16% Similarity=0.179 Sum_probs=109.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhCCCh
Q 002846 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDV 438 (874)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd-~~tYn~LI~a~~k~G~~ 438 (874)
-+|...|+...|..-+++-.+.. +-+.-+|.++...|-+.|..+.|.+-|+.-.+. .|+ -.+.|..=..+|..|+.
T Consensus 43 l~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC~qg~~ 119 (250)
T COG3063 43 LGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLCAQGRP 119 (250)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHHhCCCh
Confidence 58889999999999999988864 335679999999999999999999999987664 444 34455555678999999
Q ss_pred hHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCChhHHHHHHHHHhcch
Q 002846 439 DKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKE 506 (874)
Q Consensus 439 ~~A~~l~~eM~~~Gv~P-d~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~T~~~I~~~~~s~~ 506 (874)
++|+..|+.....--.| -..||.-+--+..+.|+.+.|...|.+-........+.....-...++.+.
T Consensus 120 ~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~ 188 (250)
T COG3063 120 EEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGD 188 (250)
T ss_pred HHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhccc
Confidence 99999999988763333 345777777677899999999999999888744444433344444444443
No 89
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.23 E-value=0.12 Score=56.70 Aligned_cols=134 Identities=13% Similarity=0.049 Sum_probs=91.7
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHH-HHHHh
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL-SVFCN 434 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI-~a~~k 434 (874)
.++-+.+.-..++++.+-.++..+.--..-|.+-|| +..+++..|...+|.++|-.+....+ -|..+|-.++ .+|.+
T Consensus 363 QsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~ 440 (557)
T KOG3785|consen 363 QSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIR 440 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHh
Confidence 556666666677888888877777655555666665 67888889999999999876654433 3556666555 57778
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHhcCCchHHHHHHHHHHhcCCCCChhHHH
Q 002846 435 NGDVDKACSVEEHMLEHGVYPEEPELEALL-RVSVEAGKGDRVYYLLHKLRTSVRKVSPSTAD 496 (874)
Q Consensus 435 ~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI-~~~~~~G~~d~A~~ll~~M~~~~~~~sp~T~~ 496 (874)
++..+.|++++-.|.. ..+..+.--|| ..|-+++.+--|-+.|+.+... .|+|+-|+
T Consensus 441 nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWe 498 (557)
T KOG3785|consen 441 NKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENWE 498 (557)
T ss_pred cCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccccC
Confidence 8899888887765543 22333333333 4466778888888888888777 77776553
No 90
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.17 E-value=0.16 Score=55.65 Aligned_cols=127 Identities=10% Similarity=0.066 Sum_probs=98.2
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDE-VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN 434 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~G-v~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k 434 (874)
..++...-+.+.++.|..+|.+-.+.+ +...+....++|.- ...++.+.|..+|+...+. +.-+...|..-|+.+.+
T Consensus 5 i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~-~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 5 IQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEY-YCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHH-HTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHH
Confidence 677788888888999999999998653 33444444444433 3356788899999998876 55667778889999999
Q ss_pred CCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 435 NGDVDKACSVEEHMLEHGVYPEE----PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 435 ~G~~~~A~~l~~eM~~~Gv~Pd~----~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
.|+.+.|..+|+..... .|.. ..|...|+.=.+.|+++.+..+..++.+.
T Consensus 83 ~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 83 LNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp TT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999998865 3433 48999999999999999999999999886
No 91
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=95.10 E-value=0.38 Score=45.68 Aligned_cols=105 Identities=14% Similarity=0.152 Sum_probs=83.3
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhC
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~ 435 (874)
..+...+.+.|+.++|.+.|+.....+ +.+...+..+...+...|++++|..++++....+ ..+...|..+-..|...
T Consensus 21 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 21 YALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHc
Confidence 445567778999999999999988764 4477888899999999999999999999887664 33456666677788899
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 002846 436 GDVDKACSVEEHMLEHGVYPEEPELEALL 464 (874)
Q Consensus 436 G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI 464 (874)
|+.++|...|+...+.. |+...+..+.
T Consensus 99 g~~~~A~~~~~~al~~~--p~~~~~~~~~ 125 (135)
T TIGR02552 99 GEPESALKALDLAIEIC--GENPEYSELK 125 (135)
T ss_pred CCHHHHHHHHHHHHHhc--cccchHHHHH
Confidence 99999999999888743 6665554443
No 92
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=95.07 E-value=1.8 Score=55.23 Aligned_cols=224 Identities=11% Similarity=0.062 Sum_probs=141.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCH---HHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCc
Q 002846 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQRE-GIKLGQ---YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNS 266 (874)
Q Consensus 191 ~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~-Gi~pd~---~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s 266 (874)
...|-.-|.-....+++++|.++++++... +++-.. -.|.++|+.-. --|.-+....+|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn----------~yG~eesl~kVFe------ 1521 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLEN----------AYGTEESLKKVFE------ 1521 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHH----------hhCcHHHHHHHHH------
Confidence 367777777777888888888888877632 333222 24445554444 3344445556663
Q ss_pred hhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHc-CCCCCeeeeccccHHHHHHhhhcCCCCccccc
Q 002846 267 TELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENL-GQFSNGHMKLNSQLLDGRSNLERGPDDQSRKK 345 (874)
Q Consensus 267 ~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~-Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~ 345 (874)
.... .+.+...|..|..- |.+.+.+++|.++|+.|.++ |-.+ -. |
T Consensus 1522 -RAcq--ycd~~~V~~~L~~i------y~k~ek~~~A~ell~~m~KKF~q~~--~v----------------------W- 1567 (1710)
T KOG1070|consen 1522 -RACQ--YCDAYTVHLKLLGI------YEKSEKNDEADELLRLMLKKFGQTR--KV----------------------W- 1567 (1710)
T ss_pred -HHHH--hcchHHHHHHHHHH------HHHhhcchhHHHHHHHHHHHhcchh--hH----------------------H-
Confidence 1111 12233347777777 88888888888888888765 2111 11 2
Q ss_pred ccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc
Q 002846 346 DWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN---EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422 (874)
Q Consensus 346 ~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd---~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~ 422 (874)
...++.+.+..+-+.|.+++.+-.+. .|- +-...-.+..-.+.|+.+.+..+|+..... .+-..
T Consensus 1568 ----------~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a-yPKRt 1634 (1710)
T KOG1070|consen 1568 ----------IMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA-YPKRT 1634 (1710)
T ss_pred ----------HHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh-Cccch
Confidence 45566667777777777777765543 232 333444555556788888888888877765 22356
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCchHHH
Q 002846 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE--PELEALLRVSVEAGKGDRVY 477 (874)
Q Consensus 423 ~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~--~ty~~LI~~~~~~G~~d~A~ 477 (874)
..|+..|++=.++|+.+.+..+|+.....++.|-- .-|...|..=-..|+-..+.
T Consensus 1635 DlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1635 DLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 77888888888888888888888888888777643 45566665555666644333
No 93
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=95.06 E-value=3.7 Score=47.40 Aligned_cols=138 Identities=12% Similarity=0.023 Sum_probs=100.4
Q ss_pred cccHHHHHHhhhcC---CCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 002846 324 NSQLLDGRSNLERG---PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN-EASLTAVGRMAMS 399 (874)
Q Consensus 324 ~g~~~eA~~l~~~m---~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd-~~tyn~LI~~~~~ 399 (874)
.++.++|+..+.++ .||...| .....+-+.+.++..+|.+.|+.+... .|+ ....-.+-.+|.+
T Consensus 319 ~~~~d~A~~~l~~L~~~~P~N~~~----------~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~ 386 (484)
T COG4783 319 AGQYDEALKLLQPLIAAQPDNPYY----------LELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLK 386 (484)
T ss_pred hcccchHHHHHHHHHHhCCCCHHH----------HHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHh
Confidence 56677777777776 5655555 055567778888888888888888875 355 4556667788888
Q ss_pred cCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHH
Q 002846 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL 479 (874)
Q Consensus 400 ~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~l 479 (874)
.|++.+|..+++.-... .+-|...|..|-.+|...|+..+|..-..| +|...|.+++|...
T Consensus 387 ~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~ 447 (484)
T COG4783 387 GGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIF 447 (484)
T ss_pred cCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHH
Confidence 88888888888876654 456778888888888888888888766555 34567888888888
Q ss_pred HHHHHhcCCCCCh
Q 002846 480 LHKLRTSVRKVSP 492 (874)
Q Consensus 480 l~~M~~~~~~~sp 492 (874)
+...++..-.-+|
T Consensus 448 l~~A~~~~~~~~~ 460 (484)
T COG4783 448 LMRASQQVKLGFP 460 (484)
T ss_pred HHHHHHhccCCcH
Confidence 8887776433333
No 94
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=94.94 E-value=0.44 Score=46.64 Aligned_cols=92 Identities=10% Similarity=-0.102 Sum_probs=44.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 002846 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472 (874)
Q Consensus 393 LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~ 472 (874)
+-..+...|++++|...|....... ..+...|..+-..+.+.|++++|...|+...... ..+...+..+-.++...|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 3444455555555555555544331 1233344444444445555555555555555422 1234444444445555555
Q ss_pred chHHHHHHHHHHhc
Q 002846 473 GDRVYYLLHKLRTS 486 (874)
Q Consensus 473 ~d~A~~ll~~M~~~ 486 (874)
.++|...|+.....
T Consensus 108 ~~eAi~~~~~Al~~ 121 (144)
T PRK15359 108 PGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555555443
No 95
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=94.92 E-value=0.56 Score=45.88 Aligned_cols=100 Identities=8% Similarity=0.020 Sum_probs=82.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChh
Q 002846 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (874)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~ 439 (874)
..+...|++++|...|+...... +.+...|..+-.++.+.|++++|...|+...... ..+...+..+-.++...|+.+
T Consensus 32 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~~ 109 (144)
T PRK15359 32 YASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEPG 109 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHH
Confidence 55678899999999999988764 4478889999999999999999999999998753 345677777888888999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHH
Q 002846 440 KACSVEEHMLEHGVYPEEPELEAL 463 (874)
Q Consensus 440 ~A~~l~~eM~~~Gv~Pd~~ty~~L 463 (874)
+|...|+..... .|+...|..+
T Consensus 110 eAi~~~~~Al~~--~p~~~~~~~~ 131 (144)
T PRK15359 110 LAREAFQTAIKM--SYADASWSEI 131 (144)
T ss_pred HHHHHHHHHHHh--CCCChHHHHH
Confidence 999999998874 4776665543
No 96
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=94.92 E-value=0.26 Score=41.48 Aligned_cols=92 Identities=17% Similarity=0.146 Sum_probs=74.3
Q ss_pred hHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCC
Q 002846 357 IRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG 436 (874)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G 436 (874)
.+...+...|++++|..+|+...... +.+...+..+...+...|++++|.+.++...... ..+..++..+...+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHH
Confidence 44556778899999999999988753 2344778888999999999999999999887763 233457777888899999
Q ss_pred ChhHHHHHHHHHHH
Q 002846 437 DVDKACSVEEHMLE 450 (874)
Q Consensus 437 ~~~~A~~l~~eM~~ 450 (874)
+.++|...+.....
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999999988765
No 97
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=94.91 E-value=0.94 Score=46.91 Aligned_cols=127 Identities=13% Similarity=0.125 Sum_probs=97.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CcccHHHHHHHH-HhCCC--hhH
Q 002846 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVF-CNNGD--VDK 440 (874)
Q Consensus 365 ~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~P-d~~tYn~LI~a~-~k~G~--~~~ 440 (874)
.++.+++...++...... +.|...|..|-..|...|++++|...|++..+. .| +...+..+-.++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 456677777777666544 568889999999999999999999999988775 34 455555555543 56677 599
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCCh-hHHHHH
Q 002846 441 ACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP-STADVI 498 (874)
Q Consensus 441 A~~l~~eM~~~Gv~P-d~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp-~T~~~I 498 (874)
|.+++++..+.. | +...+..|-..+...|++++|...++++.+. .+.. +-+.+|
T Consensus 129 A~~~l~~al~~d--P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l--~~~~~~r~~~i 184 (198)
T PRK10370 129 TREMIDKALALD--ANEVTALMLLASDAFMQADYAQAIELWQKVLDL--NSPRVNRTQLV 184 (198)
T ss_pred HHHHHHHHHHhC--CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCccHHHHH
Confidence 999999999865 5 5567777777889999999999999999886 3333 345555
No 98
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.85 E-value=5.9 Score=44.03 Aligned_cols=148 Identities=8% Similarity=-0.003 Sum_probs=103.9
Q ss_pred cccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCCHHH-HHHH
Q 002846 324 NSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAK---------KYAFQRGFEIYEKMCLDEVPMNEAS-LTAV 393 (874)
Q Consensus 324 ~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k---------~g~~~~A~~lf~~M~~~Gv~Pd~~t-yn~L 393 (874)
.+++.+|..+..++.|..- | .-++.|... ...+.-|...|.-.-..+..-|+.. =-++
T Consensus 298 q~dVqeA~~L~Kdl~PttP-~-----------EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsm 365 (557)
T KOG3785|consen 298 QNDVQEAISLCKDLDPTTP-Y-----------EYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSM 365 (557)
T ss_pred cccHHHHHHHHhhcCCCCh-H-----------HHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHH
Confidence 7888999999888866431 1 334443332 2246667777776666665544332 2455
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCC
Q 002846 394 GRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL-LRVSVEAGK 472 (874)
Q Consensus 394 I~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~L-I~~~~~~G~ 472 (874)
...+.-.-++|+.+-.++.++..=..-|...|| +-.++|..|+..+|.++|-.+....+ .|..+|.++ -++|.+++.
T Consensus 366 As~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nkk 443 (557)
T KOG3785|consen 366 ASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNKK 443 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcCC
Confidence 666666677899999998888776667788887 78899999999999999966544332 456677655 466789999
Q ss_pred chHHHHHHHHHHh
Q 002846 473 GDRVYYLLHKLRT 485 (874)
Q Consensus 473 ~d~A~~ll~~M~~ 485 (874)
..-|++++-.|..
T Consensus 444 P~lAW~~~lk~~t 456 (557)
T KOG3785|consen 444 PQLAWDMMLKTNT 456 (557)
T ss_pred chHHHHHHHhcCC
Confidence 9999999877654
No 99
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=94.74 E-value=0.47 Score=43.49 Aligned_cols=96 Identities=11% Similarity=0.030 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----cccHHHHHHHHHhCCChhHHHHHHHHHHHcC--CCCCHHHHHH
Q 002846 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----LRSYGPALSVFCNNGDVDKACSVEEHMLEHG--VYPEEPELEA 462 (874)
Q Consensus 389 tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd----~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~G--v~Pd~~ty~~ 462 (874)
++-.+...+.+.|+.++|.+.|..+.... |+ ...+..+-..+.+.|++++|...|+.+.... -......+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 34455556666777777777777666542 22 1234445666667777777777777766532 1111344555
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhc
Q 002846 463 LLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 463 LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
+-..+.+.|+.++|...+.++...
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHH
Confidence 556666777777777777777665
No 100
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.73 E-value=1.5 Score=47.38 Aligned_cols=173 Identities=12% Similarity=0.050 Sum_probs=105.4
Q ss_pred CCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccH
Q 002846 248 KSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQL 327 (874)
Q Consensus 248 k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~ 327 (874)
+.|+.+.|++-|. +...-+|..+.+.||..+.- -+.++.+.|+....|+.++|++-- --++-|..
T Consensus 156 kegqyEaAvqkFq-------aAlqvsGyqpllAYniALaH-------y~~~qyasALk~iSEIieRG~r~H-PElgIGm~ 220 (459)
T KOG4340|consen 156 KEGQYEAAVQKFQ-------AALQVSGYQPLLAYNLALAH-------YSSRQYASALKHISEIIERGIRQH-PELGIGMT 220 (459)
T ss_pred ccccHHHHHHHHH-------HHHhhcCCCchhHHHHHHHH-------HhhhhHHHHHHHHHHHHHhhhhcC-CccCccce
Confidence 8899999999995 44444478899999988654 467889999999999999996421 11111111
Q ss_pred HHHHHhhhcCCCCcccccccccccCCccchHHH-------HHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh
Q 002846 328 LDGRSNLERGPDDQSRKKDWSIDNQDADEIRLS-------EDAKKYAFQRGFEIYEKMCLD-EVPMNEASLTAVGRMAMS 399 (874)
Q Consensus 328 ~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~-------~~~k~g~~~~A~~lf~~M~~~-Gv~Pd~~tyn~LI~~~~~ 399 (874)
.+ .||+-+..+ . ...+-+.++. -+.+.++.+.|.+-+-+|.-+ .-..|.+|...+.-.-.
T Consensus 221 te--------giDvrsvgN-t--~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~- 288 (459)
T KOG4340|consen 221 TE--------GIDVRSVGN-T--LVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM- 288 (459)
T ss_pred ec--------cCchhcccc-h--HHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-
Confidence 11 122111100 0 0000022222 234566777777777777643 23457777766543322
Q ss_pred cCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHH
Q 002846 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (874)
Q Consensus 400 ~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM 448 (874)
.+++.+.++-+.-+...+- .-..||..++--||++.-++.|-.++.+=
T Consensus 289 ~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 289 DARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred cCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 3445555555555554433 23568888999999999999998888763
No 101
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=94.72 E-value=4.3 Score=52.13 Aligned_cols=202 Identities=12% Similarity=0.046 Sum_probs=144.8
Q ss_pred CCCCHHHHHHHHhhcccCchhhhhcCCCC----chhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeec
Q 002846 248 KSGSGMRTLDTFEVSTMNSTELGDSRDMD----NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL 323 (874)
Q Consensus 248 k~G~~~~A~~vf~v~~~~s~em~~~~gi~----d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~ 323 (874)
..+.++.|..++. +.+..- .+. -.-.|-++++. -.--|.-+...++|++..+.- |..+
T Consensus 1470 elsEiekAR~iae------rAL~tI-N~REeeEKLNiWiA~lNl------En~yG~eesl~kVFeRAcqyc---d~~~-- 1531 (1710)
T KOG1070|consen 1470 ELSEIEKARKIAE------RALKTI-NFREEEEKLNIWIAYLNL------ENAYGTEESLKKVFERACQYC---DAYT-- 1531 (1710)
T ss_pred hhhhhHHHHHHHH------HHhhhC-CcchhHHHHHHHHHHHhH------HHhhCcHHHHHHHHHHHHHhc---chHH--
Confidence 4567778888774 222211 222 12346666666 555566677788888887653 1111
Q ss_pred cccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 002846 324 NSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDG 403 (874)
Q Consensus 324 ~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~ 403 (874)
.| ..|..-|.+.+..++|-++|+.|.++-- -....|...+..+.+..+.
T Consensus 1532 -------------------V~-----------~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~ 1580 (1710)
T KOG1070|consen 1532 -------------------VH-----------LKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEA 1580 (1710)
T ss_pred -------------------HH-----------HHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHH
Confidence 12 7888899999999999999999998622 4568899999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCcc---cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHH
Q 002846 404 DMAFDMVKRMKSLGINPRLR---SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLL 480 (874)
Q Consensus 404 d~A~~l~~~M~~~Gi~Pd~~---tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll 480 (874)
+.|..++.+..+. .|... .-.-....-.++|+.+.+..+|+.....- +--...|+..|+.=.++|+.+.+..+|
T Consensus 1581 ~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lf 1657 (1710)
T KOG1070|consen 1581 EAARELLKRALKS--LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLF 1657 (1710)
T ss_pred HHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHH
Confidence 9999999886654 46522 22333444457899999999999988643 235678999999999999999999999
Q ss_pred HHHHhcCCCCChh-HHHHHHHHHh
Q 002846 481 HKLRTSVRKVSPS-TADVIAKWFN 503 (874)
Q Consensus 481 ~~M~~~~~~~sp~-T~~~I~~~~~ 503 (874)
++.... ..++- +--....|++
T Consensus 1658 eRvi~l--~l~~kkmKfffKkwLe 1679 (1710)
T KOG1070|consen 1658 ERVIEL--KLSIKKMKFFFKKWLE 1679 (1710)
T ss_pred HHHHhc--CCChhHhHHHHHHHHH
Confidence 999999 66665 2222444444
No 102
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.63 E-value=0.22 Score=53.34 Aligned_cols=102 Identities=22% Similarity=0.210 Sum_probs=79.8
Q ss_pred CCCHHHHHHHHHHHHh-----cCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCC----------------ChhHHH
Q 002846 384 PMNEASLTAVGRMAMS-----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG----------------DVDKAC 442 (874)
Q Consensus 384 ~Pd~~tyn~LI~~~~~-----~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G----------------~~~~A~ 442 (874)
.-|-.+|-+.+..+.. .+.++-....++.|++.|+.-|+.+|+.||.-+-+.. .-+-|.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 3466677777766664 3667888888888999999999999999888776653 224578
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHh
Q 002846 443 SVEEHMLEHGVYPEEPELEALLRVSVEAGKG-DRVYYLLHKLRT 485 (874)
Q Consensus 443 ~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~-d~A~~ll~~M~~ 485 (874)
.++++|..+||.||-.+-..||+++.+-+.. .+..+++--|.+
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 9999999999999999999999999888764 466666666654
No 103
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=94.63 E-value=0.52 Score=45.98 Aligned_cols=124 Identities=15% Similarity=0.117 Sum_probs=86.3
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcc--cHHHHHHH
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPM--NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR--SYGPALSV 431 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~P--d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~--tYn~LI~a 431 (874)
..++..+ ..++...+.+.++.+....-.- .....=.+...+...|++++|...|+......-.|... ..-.|-..
T Consensus 16 ~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~ 94 (145)
T PF09976_consen 16 EQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARI 94 (145)
T ss_pred HHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Confidence 4445555 4888899999999998864111 11223334577888999999999999998876333322 22235566
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHH
Q 002846 432 FCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482 (874)
Q Consensus 432 ~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~ 482 (874)
+...|+.++|...++...... .....+..+=+.|.+.|+.++|...|..
T Consensus 95 ~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 95 LLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 778899999999997754433 2334556677778999999999998865
No 104
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.59 E-value=0.24 Score=47.55 Aligned_cols=99 Identities=16% Similarity=0.104 Sum_probs=61.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 002846 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465 (874)
Q Consensus 386 d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~ 465 (874)
|+.++.++|-++++.|+++....+++..= |+.++...= .+. --....+.|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~~---------~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKKK---------EGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCccc---------cCc---------cCCCCCCCCCHHHHHHHHH
Confidence 56778888888888888888877776432 332221000 000 1122356677888888888
Q ss_pred HHHhcCCchHHHHHHHHHHhc-CCCCChhHHHHHHHHHhc
Q 002846 466 VSVEAGKGDRVYYLLHKLRTS-VRKVSPSTADVIAKWFNS 504 (874)
Q Consensus 466 ~~~~~G~~d~A~~ll~~M~~~-~~~~sp~T~~~I~~~~~s 504 (874)
+|+.+|++..|+++++...+. .+.++..+|..|..|+--
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 887778888888887777664 223333477777766653
No 105
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.33 E-value=13 Score=42.98 Aligned_cols=279 Identities=11% Similarity=0.049 Sum_probs=173.8
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Q 002846 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAA 240 (874)
Q Consensus 161 ~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~ 240 (874)
+..++...|+++|+...+ ..|+.-.|++.|.-=.+...++.|..+|++.+-. .|++.+|---..-=-
T Consensus 152 E~LgNi~gaRqiferW~~--------w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~--- 218 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWME--------WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEE--- 218 (677)
T ss_pred HHhcccHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHH---
Confidence 456888899999998632 5788899999999999999999999999998853 488888765554444
Q ss_pred cCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCC--chhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCC
Q 002846 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (874)
Q Consensus 241 ~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~--d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd 318 (874)
++|.+.-|..++. ..++..|-. +...+++.-.- =.+...++.|.-+|.--... .|.
T Consensus 219 -------k~g~~~~aR~Vye-------rAie~~~~d~~~e~lfvaFA~f------Ee~qkE~ERar~iykyAld~--~pk 276 (677)
T KOG1915|consen 219 -------KHGNVALARSVYE-------RAIEFLGDDEEAEILFVAFAEF------EERQKEYERARFIYKYALDH--IPK 276 (677)
T ss_pred -------hcCcHHHHHHHHH-------HHHHHhhhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHh--cCc
Confidence 7788887777774 111110111 11122222111 11222334444444332221 111
Q ss_pred eee---ec-----------cccHHHHHHhhhcC------CCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHH
Q 002846 319 GHM---KL-----------NSQLLDGRSNLERG------PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKM 378 (874)
Q Consensus 319 ~~t---y~-----------~g~~~eA~~l~~~m------~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M 378 (874)
.-+ |. ..-++++..--..+ ..|...|-.| --.+.---..|+.+...++|+.-
T Consensus 277 ~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsW--------fdylrL~e~~g~~~~Ire~yErA 348 (677)
T KOG1915|consen 277 GRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSW--------FDYLRLEESVGDKDRIRETYERA 348 (677)
T ss_pred ccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHH--------HHHHHHHHhcCCHHHHHHHHHHH
Confidence 100 00 11122222222222 4455555222 22334444568999999999988
Q ss_pred HHCCCCCCH-------HHHHHH---HHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHH----hCCChhHHHHH
Q 002846 379 CLDEVPMNE-------ASLTAV---GRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC----NNGDVDKACSV 444 (874)
Q Consensus 379 ~~~Gv~Pd~-------~tyn~L---I~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~----k~G~~~~A~~l 444 (874)
... ++|-. ..|--+ +-.=....+++.+.+++....+. ++-...||.-+--.|+ ++.++..|.++
T Consensus 349 Ian-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARki 426 (677)
T KOG1915|consen 349 IAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKI 426 (677)
T ss_pred Hcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHH
Confidence 754 55521 112111 11112467899999999998874 5556788888777766 46789999998
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 445 EEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 445 ~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
+.... |..|-..+|-.-|..=.+.+.+|+...|+.+...-
T Consensus 427 LG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~ 466 (677)
T KOG1915|consen 427 LGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF 466 (677)
T ss_pred HHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 87654 67799999988888888999999999999998876
No 106
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=94.28 E-value=3.3 Score=49.25 Aligned_cols=284 Identities=11% Similarity=0.033 Sum_probs=165.0
Q ss_pred chHHHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 002846 156 DNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQL-RVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLY 234 (874)
Q Consensus 156 ~~~~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~ty-n~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~ 234 (874)
.|+.+.+.+..++|++.+..-... .-|-..| -+--.-+.+.+++++|..+|..+... .||.+-|.-.+.
T Consensus 191 ~n~i~~E~g~~q~ale~L~~~e~~--------i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~ 260 (700)
T KOG1156|consen 191 QNQILIEAGSLQKALEHLLDNEKQ--------IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLE 260 (700)
T ss_pred HHHHHHHcccHHHHHHHHHhhhhH--------HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHH
Confidence 345677778878887777655211 0111222 34445678899999999999999876 488888887776
Q ss_pred HHHhcccCCCcccCCCCHHHHH-HHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHc
Q 002846 235 LCSSAAVGVVKPAKSGSGMRTL-DTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENL 313 (874)
Q Consensus 235 a~~~~~~~~~~~~k~G~~~~A~-~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~ 313 (874)
.+.. +.-..-+++ .+|...+ +..... .++--..-+.+ .+ ....+.....+..+.++
T Consensus 261 ~~lg---------k~~d~~~~lk~ly~~ls---~~y~r~-e~p~Rlplsvl-~~---------eel~~~vdkyL~~~l~K 317 (700)
T KOG1156|consen 261 KALG---------KIKDMLEALKALYAILS---EKYPRH-ECPRRLPLSVL-NG---------EELKEIVDKYLRPLLSK 317 (700)
T ss_pred HHHH---------HHhhhHHHHHHHHHHHh---hcCccc-ccchhccHHHh-Cc---------chhHHHHHHHHHHHhhc
Confidence 6651 112222333 4443110 111110 11100011111 11 12234455666777778
Q ss_pred CCC---CCeeeeccc--c--HHH--HHHhhhcC---------------CCCcccccccccccCCccchHHHHHHhcCCHH
Q 002846 314 GQF---SNGHMKLNS--Q--LLD--GRSNLERG---------------PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQ 369 (874)
Q Consensus 314 Gi~---Pd~~ty~~g--~--~~e--A~~l~~~m---------------~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~ 369 (874)
|+. +|+.++... + +.+ +..+...+ .|....| ..-.++..+-+.|+++
T Consensus 318 g~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllW---------t~y~laqh~D~~g~~~ 388 (700)
T KOG1156|consen 318 GVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLW---------TLYFLAQHYDKLGDYE 388 (700)
T ss_pred CCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHH---------HHHHHHHHHHHcccHH
Confidence 754 444444311 0 110 11111111 2222222 0134567777899999
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHH
Q 002846 370 RGFEIYEKMCLDEVPMNEA-SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (874)
Q Consensus 370 ~A~~lf~~M~~~Gv~Pd~~-tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM 448 (874)
.|....+.-..+ .|+.+ -|-+=.+.++.+|++++|...+++..+... ||...-+-...-..++.++++|.++....
T Consensus 389 ~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~eA~~~~skF 465 (700)
T KOG1156|consen 389 VALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIEEAEEVLSKF 465 (700)
T ss_pred HHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccHHHHHHHHHh
Confidence 999999987754 55533 455566889999999999999999887754 67666666777778899999999999888
Q ss_pred HHcCCCCCHHHHHHHH----------HHHHhcCCchHHHHHHHHHHhc
Q 002846 449 LEHGVYPEEPELEALL----------RVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 449 ~~~Gv~Pd~~ty~~LI----------~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
...|. +...+-+.+ .+|.+.|++..|++=|+.+...
T Consensus 466 Tr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~ 511 (700)
T KOG1156|consen 466 TREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKH 511 (700)
T ss_pred hhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHH
Confidence 87775 333332222 2345666677776666665543
No 107
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=94.23 E-value=0.35 Score=57.33 Aligned_cols=75 Identities=11% Similarity=0.220 Sum_probs=46.5
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHH
Q 002846 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKA 441 (874)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A 441 (874)
-..+..+.+|+.+++.+...... ..-|.-+.+-|+..|+++.|.++|-+ .+ -++-.|.+|.++|+++.|
T Consensus 742 ai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e---~~------~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTE---AD------LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHh---cc------hhHHHHHHHhccccHHHH
Confidence 33455667777777776665322 23456666777777777777777743 12 245667777777777777
Q ss_pred HHHHHH
Q 002846 442 CSVEEH 447 (874)
Q Consensus 442 ~~l~~e 447 (874)
+++-.+
T Consensus 811 ~kla~e 816 (1636)
T KOG3616|consen 811 FKLAEE 816 (1636)
T ss_pred HHHHHH
Confidence 766543
No 108
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.18 E-value=2 Score=49.44 Aligned_cols=215 Identities=13% Similarity=0.081 Sum_probs=127.5
Q ss_pred cCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhccc
Q 002846 163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREG-IKLGQYHYNVLLYLCSSAAV 241 (874)
Q Consensus 163 ~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~G-i~pd~~tyn~LL~a~~~~~~ 241 (874)
.++.-.|..-|+..+......+ ..|-.+-..|....+-.+.+..|+...+-+ -.||++..-.-|....
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~-------~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL---- 407 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFN-------SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLL---- 407 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccc-------hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHH----
Confidence 3566677788887755322111 226667778999999999999999998654 4588888877777776
Q ss_pred CCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeee
Q 002846 242 GVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHM 321 (874)
Q Consensus 242 ~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~t 321 (874)
+++++|..=|+ +-..- .-.+.+.|--+--+ .-+.+++++++..|++-+++ .|+..
T Consensus 408 --------~q~e~A~aDF~-------Kai~L-~pe~~~~~iQl~~a------~Yr~~k~~~~m~~Fee~kkk--FP~~~- 462 (606)
T KOG0547|consen 408 --------QQYEEAIADFQ-------KAISL-DPENAYAYIQLCCA------LYRQHKIAESMKTFEEAKKK--FPNCP- 462 (606)
T ss_pred --------HHHHHHHHHHH-------HHhhc-ChhhhHHHHHHHHH------HHHHHHHHHHHHHHHHHHHh--CCCCc-
Confidence 67778888885 22211 11144444444333 44667889999999888776 33332
Q ss_pred eccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHH--HHH
Q 002846 322 KLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD-----EVPMNEASLT--AVG 394 (874)
Q Consensus 322 y~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~-----Gv~Pd~~tyn--~LI 394 (874)
-.| |..-..+...++++.|.+.|+.-.+- ++..+..++- +++
T Consensus 463 --------------------Evy-----------~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l 511 (606)
T KOG0547|consen 463 --------------------EVY-----------NLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALL 511 (606)
T ss_pred --------------------hHH-----------HHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHh
Confidence 122 66667777888899999988876542 2222222221 111
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhCCChhHHHHHHHH
Q 002846 395 RMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEH 447 (874)
Q Consensus 395 ~~~~~~G~~d~A~~l~~~M~~~Gi~Pd-~~tYn~LI~a~~k~G~~~~A~~l~~e 447 (874)
-.- -.+++..|.++++.-.+. .|. ...|-+|-..-...|++++|.++|+.
T Consensus 512 ~~q-wk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 512 VLQ-WKEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEK 562 (606)
T ss_pred hhc-hhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 111 235666666666654433 222 23444444455555555555555544
No 109
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.16 E-value=11 Score=43.33 Aligned_cols=127 Identities=11% Similarity=0.007 Sum_probs=108.0
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhC
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~ 435 (874)
.++-+.|.-.++.++|...|+.-.+-+ +-....|+.|=.-|....+...|.+-++.-.+. .+-|-+.|-.|=.+|.-.
T Consensus 334 CiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi-~p~DyRAWYGLGQaYeim 411 (559)
T KOG1155|consen 334 CIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI-NPRDYRAWYGLGQAYEIM 411 (559)
T ss_pred eeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc-CchhHHHHhhhhHHHHHh
Confidence 555577888899999999999887754 234678888889999999999999999998876 346788888899999999
Q ss_pred CChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 436 GDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 436 G~~~~A~~l~~eM~~~Gv~P-d~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
+...=|+-.|++... +.| |...|.+|=++|.+.++.++|.+.|.+...-
T Consensus 412 ~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 412 KMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred cchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 999889888888765 445 7899999999999999999999999988765
No 110
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.14 E-value=5.3 Score=47.56 Aligned_cols=296 Identities=13% Similarity=0.087 Sum_probs=165.5
Q ss_pred hcCChhHHHHHHHHHhhCCCCCCC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Q 002846 162 QRTNDSGQYKVRGITDEKGSKKSK-KDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAA 240 (874)
Q Consensus 162 k~~~~~~A~~vf~eM~~~g~k~~~-g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~ 240 (874)
-.++..+...++.+.+..- .|.. .-+|. -.|..+-.-|-.+|+++.|..+|++..+-..+- +.....+=-.|+...
T Consensus 359 ~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~-~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~-v~dLa~vw~~waemE 435 (835)
T KOG2047|consen 359 YEGNAAEQINTYTEAVKTV-DPKKAVGSPG-TLWVEFAKLYENNGDLDDARVIFEKATKVPYKT-VEDLAEVWCAWAEME 435 (835)
T ss_pred hcCChHHHHHHHHHHHHcc-CcccCCCChh-hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccc-hHHHHHHHHHHHHHH
Confidence 4566777788888875532 2222 11233 467788888889999999999999988654432 222222223333322
Q ss_pred cCCCcccCCCCHHHHHHHHhhcccCchhhhhcC------CCCc--------hhhhHhhhcCcccChhhhhcCChHHHHHH
Q 002846 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSR------DMDN--------NGQLDYGSSPMIDKLESNSSYRFDDLDST 306 (874)
Q Consensus 241 ~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~------gi~d--------~vtyn~LI~~~~~~~~~~~~g~~e~A~~l 306 (874)
. +..+++.|+.++.-.. .+.... |-.+ ...|.-.++- --..|-++....+
T Consensus 436 l------rh~~~~~Al~lm~~A~----~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dl------eEs~gtfestk~v 499 (835)
T KOG2047|consen 436 L------RHENFEAALKLMRRAT----HVPTNPELEYYDNSEPVQARLHRSLKIWSMYADL------EESLGTFESTKAV 499 (835)
T ss_pred H------hhhhHHHHHHHHHhhh----cCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHH------HHHhccHHHHHHH
Confidence 1 5566777777663110 011110 1111 1224444444 3445678888889
Q ss_pred HHHHHHcCCCCCeeeec-------cccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHH-hcC--CHHHHHHHHH
Q 002846 307 FNEKENLGQFSNGHMKL-------NSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDA-KKY--AFQRGFEIYE 376 (874)
Q Consensus 307 f~eM~~~Gi~Pd~~ty~-------~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~-k~g--~~~~A~~lf~ 376 (874)
++.|.+..+..-.+.-| +.-.+++.+.+++.. ..+ .|.++-+.. |+-+.-+. +.| .++.|.+||+
T Consensus 500 YdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI---~LF-k~p~v~diW-~tYLtkfi~rygg~klEraRdLFE 574 (835)
T KOG2047|consen 500 YDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGI---SLF-KWPNVYDIW-NTYLTKFIKRYGGTKLERARDLFE 574 (835)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCC---ccC-CCccHHHHH-HHHHHHHHHHhcCCCHHHHHHHHH
Confidence 99998877654433333 555677777777760 011 122222122 33333333 333 7999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHH--HhcCChhHHHHHHHHHHHCCCCCC--cccHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 002846 377 KMCLDEVPMNEASLTAVGRMA--MSMGDGDMAFDMVKRMKSLGINPR--LRSYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (874)
Q Consensus 377 ~M~~~Gv~Pd~~tyn~LI~~~--~~~G~~d~A~~l~~~M~~~Gi~Pd--~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~G 452 (874)
+-.+ |++|.-.-+--|+-+- -+.|-...|..++++.- .++.+. ...||..|.--...=-+.....+|++.++.
T Consensus 575 qaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat-~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~- 651 (835)
T KOG2047|consen 575 QALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT-SAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES- 651 (835)
T ss_pred HHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh-
Confidence 9888 8887544333222221 23577888888888743 334443 456777776554443344555666665553
Q ss_pred CCCCHHHHHHHHHHH---HhcCCchHHHHHHHHHHh
Q 002846 453 VYPEEPELEALLRVS---VEAGKGDRVYYLLHKLRT 485 (874)
Q Consensus 453 v~Pd~~ty~~LI~~~---~~~G~~d~A~~ll~~M~~ 485 (874)
-||...=..-|+.. ++.|.+|+|..++..-.+
T Consensus 652 -Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 652 -LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred -CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 45555444433332 567777777777765443
No 111
>PRK04841 transcriptional regulator MalT; Provisional
Probab=93.90 E-value=12 Score=47.62 Aligned_cols=275 Identities=14% Similarity=0.037 Sum_probs=149.5
Q ss_pred hcCChhHHHHHHHHHhhCCCCCCCCCCCCHH-HHHH-HHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHH
Q 002846 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQF-QLRV-ELDMCSKRGDVMGAIRLYDKAQREGIKLGQ----YHYNVLLYL 235 (874)
Q Consensus 162 k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~-tyn~-LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~----~tyn~LL~a 235 (874)
..++.++|..+++.....-...+.+..|... .... +-..+...|++++|...+++....--..+. ...+.+-..
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 4567778888877764321111111112211 1122 223456789999999999998753111121 122222222
Q ss_pred HHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCc--hhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHc
Q 002846 236 CSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDN--NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENL 313 (874)
Q Consensus 236 ~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d--~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~ 313 (874)
+. ..|++++|...+.-. .+.....|-.. ..+++.+-.. +...|+++.|...+++....
T Consensus 501 ~~----------~~G~~~~A~~~~~~a----l~~~~~~g~~~~~~~~~~~la~~------~~~~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 501 HH----------CKGELARALAMMQQT----EQMARQHDVYHYALWSLLQQSEI------LFAQGFLQAAYETQEKAFQL 560 (903)
T ss_pred HH----------HcCCHHHHHHHHHHH----HHHHhhhcchHHHHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHH
Confidence 33 578999998888511 01111111111 1233444444 67889999999988876543
Q ss_pred ----CCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHC--CCCC--
Q 002846 314 ----GQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD--EVPM-- 385 (874)
Q Consensus 314 ----Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~--Gv~P-- 385 (874)
|. ++.... ...+ ..+-..+...|++++|.+.+.+.... ...+
T Consensus 561 ~~~~~~-~~~~~~------------------~~~~-----------~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~ 610 (903)
T PRK04841 561 IEEQHL-EQLPMH------------------EFLL-----------RIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQ 610 (903)
T ss_pred HHHhcc-ccccHH------------------HHHH-----------HHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchH
Confidence 11 000000 0001 22333455679999999988876542 1112
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCcccH-----HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH--
Q 002846 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN-PRLRSY-----GPALSVFCNNGDVDKACSVEEHMLEHGVYPEE-- 457 (874)
Q Consensus 386 d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~-Pd~~tY-----n~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~-- 457 (874)
...++..+...+...|+.++|.+.+.+.....-. .....+ ...+..+...|+.+.|.+++............
T Consensus 611 ~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 690 (903)
T PRK04841 611 QLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFL 690 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhH
Confidence 2344555667788899999999998887542110 111111 11224455688999999887765442211111
Q ss_pred -HHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 458 -PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 458 -~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
..+..+-.++...|+.++|..++.+....
T Consensus 691 ~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 691 QGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 11345566678889999999999887653
No 112
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=93.84 E-value=0.42 Score=45.89 Aligned_cols=56 Identities=16% Similarity=0.116 Sum_probs=48.2
Q ss_pred CCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCC
Q 002846 417 GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH-GVYPEEPELEALLRVSVEAGK 472 (874)
Q Consensus 417 Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~-Gv~Pd~~ty~~LI~~~~~~G~ 472 (874)
.+.|+..+..+++.+|+..|++..|+++.+...+. ++..+..+|..|+.-+...-+
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 47799999999999999999999999999998765 888889999999987655443
No 113
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=93.76 E-value=3.5 Score=45.03 Aligned_cols=117 Identities=16% Similarity=0.174 Sum_probs=65.4
Q ss_pred CCHHHHHHHHHHHHH----CCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcc------cHHHHHHHHH
Q 002846 366 YAFQRGFEIYEKMCL----DEVPM--NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR------SYGPALSVFC 433 (874)
Q Consensus 366 g~~~~A~~lf~~M~~----~Gv~P--d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~------tYn~LI~a~~ 433 (874)
|++++|.+.|++-.+ .| .+ -..++.-+...+.+.|++++|.++|+++...-+.-+.. .|-..+-.+.
T Consensus 129 ~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L 207 (282)
T PF14938_consen 129 GDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHL 207 (282)
T ss_dssp --HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHH
Confidence 455666665554332 23 11 13456778888999999999999999987664332222 2223344555
Q ss_pred hCCChhHHHHHHHHHHHc--CCCC--CHHHHHHHHHHHHhcCCch---HHHHHHHHHH
Q 002846 434 NNGDVDKACSVEEHMLEH--GVYP--EEPELEALLRVSVEAGKGD---RVYYLLHKLR 484 (874)
Q Consensus 434 k~G~~~~A~~l~~eM~~~--Gv~P--d~~ty~~LI~~~~~~G~~d---~A~~ll~~M~ 484 (874)
..||...|.+.|+..... ++.. .-.....||.++ +.|+.+ +|..-|+.+.
T Consensus 208 ~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~-~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 208 AMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY-EEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH-HTT-CCCHHHHCHHHTTSS
T ss_pred HcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HhCCHHHHHHHHHHHcccC
Confidence 678999999999987654 2322 233445566665 445444 4444444443
No 114
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=93.70 E-value=0.69 Score=53.02 Aligned_cols=111 Identities=11% Similarity=0.120 Sum_probs=89.9
Q ss_pred cccHHHHHHhhhcC---CCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 002846 324 NSQLLDGRSNLERG---PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM 400 (874)
Q Consensus 324 ~g~~~eA~~l~~~m---~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~ 400 (874)
.++++.|..+|+++ .|++ . ..|...+...++-.+|.+++++..... +-|........+.|.+.
T Consensus 182 t~~~~~ai~lle~L~~~~pev--~-----------~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERDPEV--A-----------VLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred cccHHHHHHHHHHHHhcCCcH--H-----------HHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 66788888888888 4442 2 446667777788899999999888642 44677777788889999
Q ss_pred CChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhCCChhHHHHHHHHHHH
Q 002846 401 GDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (874)
Q Consensus 401 G~~d~A~~l~~~M~~~Gi~Pd-~~tYn~LI~a~~k~G~~~~A~~l~~eM~~ 450 (874)
++.+.|+.+.+++... .|+ ..+|..|..+|...|+++.|+..++.|.-
T Consensus 248 ~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 248 KKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 9999999999998875 566 45999999999999999999999988764
No 115
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.61 E-value=1.5 Score=47.02 Aligned_cols=121 Identities=18% Similarity=0.150 Sum_probs=85.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCC
Q 002846 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG 436 (874)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~----~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G 436 (874)
.+.|..+++-|...+++|.+-. +..|.+-|..++.+ .+.+.+|+-+|++|.+. ..|+.-+-|-...++...|
T Consensus 146 I~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~ 221 (299)
T KOG3081|consen 146 ILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLG 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhc
Confidence 3446668888999999998754 67777766665554 55788999999998764 6688888888888888889
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHhc
Q 002846 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG-DRVYYLLHKLRTS 486 (874)
Q Consensus 437 ~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~-d~A~~ll~~M~~~ 486 (874)
++++|..++++...+.- -+..+..-||-.--..|.. +-..+.+..++..
T Consensus 222 ~~eeAe~lL~eaL~kd~-~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 222 RYEEAESLLEEALDKDA-KDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred CHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 99999999998887642 2445555555554555554 3345566666554
No 116
>PRK04841 transcriptional regulator MalT; Provisional
Probab=93.60 E-value=6.3 Score=50.20 Aligned_cols=272 Identities=8% Similarity=-0.006 Sum_probs=156.8
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CC--HHHHHHHHH
Q 002846 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRS-EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIK---LG--QYHYNVLLY 234 (874)
Q Consensus 161 ~k~~~~~~A~~vf~eM~~~g~k~~~g~~P-d~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~---pd--~~tyn~LL~ 234 (874)
...++.++|...+++....- +.. ..+ -...++.+-..+...|++++|...+.+.....-. +. ..+++.+-.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~--~~~-~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 463 INDGDPEEAERLAELALAEL--PLT-WYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcC--CCc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 45678889999998864421 111 011 1134455556678899999999999998742111 11 122222333
Q ss_pred HHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCC----chhhhHhhhcCcccChhhhhcCChHHHHHHHHHH
Q 002846 235 LCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD----NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310 (874)
Q Consensus 235 a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~----d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM 310 (874)
.+. ..|++++|...+.-. .+.....+.. ....+..+-.. +...|++++|...+.+.
T Consensus 540 ~~~----------~~G~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~~~la~~------~~~~G~~~~A~~~~~~a 599 (903)
T PRK04841 540 ILF----------AQGFLQAAYETQEKA----FQLIEEQHLEQLPMHEFLLRIRAQL------LWEWARLDEAEQCARKG 599 (903)
T ss_pred HHH----------HCCCHHHHHHHHHHH----HHHHHHhccccccHHHHHHHHHHHH------HHHhcCHHHHHHHHHHh
Confidence 333 568999998887511 1122211221 12223333333 56679999999988876
Q ss_pred HHcCC--CCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHC----CCC
Q 002846 311 ENLGQ--FSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD----EVP 384 (874)
Q Consensus 311 ~~~Gi--~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~----Gv~ 384 (874)
....- .+.. . +. .+ ..+-..+...|+.++|.+.++..... +..
T Consensus 600 l~~~~~~~~~~--~-------~~-----------~~-----------~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~ 648 (903)
T PRK04841 600 LEVLSNYQPQQ--Q-------LQ-----------CL-----------AMLAKISLARGDLDNARRYLNRLENLLGNGRYH 648 (903)
T ss_pred HHhhhccCchH--H-------HH-----------HH-----------HHHHHHHHHcCCHHHHHHHHHHHHHHHhccccc
Confidence 54311 0110 0 00 01 33344566789999999998887542 111
Q ss_pred CCH-HHH-HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc---ccHHHHHHHHHhCCChhHHHHHHHHHHHc----CCCC
Q 002846 385 MNE-ASL-TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL---RSYGPALSVFCNNGDVDKACSVEEHMLEH----GVYP 455 (874)
Q Consensus 385 Pd~-~ty-n~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~---~tYn~LI~a~~k~G~~~~A~~l~~eM~~~----Gv~P 455 (874)
... ... ...+..+...|+.+.|..++............ ..+..+-..+...|+.++|..+++..... |..+
T Consensus 649 ~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~ 728 (903)
T PRK04841 649 SDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMS 728 (903)
T ss_pred HhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchH
Confidence 111 111 11234456689999999998765432111110 01234556677889999999999887643 4333
Q ss_pred C-HHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 456 E-EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 456 d-~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
+ ..++..+-.++.+.|+.++|...|.+....
T Consensus 729 ~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 729 DLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 234555666778899999999999988765
No 117
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.59 E-value=2.6 Score=48.64 Aligned_cols=122 Identities=16% Similarity=0.206 Sum_probs=89.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----cccHHHHHH-H---
Q 002846 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----LRSYGPALS-V--- 431 (874)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd----~~tYn~LI~-a--- 431 (874)
-+..|.+++++++..|++-+++ ++--.-.||-....+...++++.|.+.|+..... .|+ .+.-.++|+ +
T Consensus 436 ~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV~Ka~l~ 512 (606)
T KOG0547|consen 436 CALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAPLVHKALLV 512 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccccchhhhhhhHhh
Confidence 3444778999999999998876 3445678898999999999999999999976653 333 111112221 1
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 432 FCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 432 ~~k~G~~~~A~~l~~eM~~~Gv~P-d~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
+-=.+++..|.+++....+.. | ....|.+|-..-.+.|++++|+++|++-..-
T Consensus 513 ~qwk~d~~~a~~Ll~KA~e~D--pkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 513 LQWKEDINQAENLLRKAIELD--PKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred hchhhhHHHHHHHHHHHHccC--chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 112389999999998887643 3 4567888988899999999999999986543
No 118
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.52 E-value=1 Score=48.22 Aligned_cols=137 Identities=15% Similarity=0.152 Sum_probs=99.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHh----C
Q 002846 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN----N 435 (874)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k----~ 435 (874)
.-|++.|+.++|++..+. |-..+....+ +..+.+..++|.|.+.++.|.+- -+..|.+-|-.++.+ .
T Consensus 116 ~i~~~~~~~deAl~~~~~----~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHL----GENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhc----cchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccc
Confidence 457899999999999876 2122333333 34456777899999999999875 355566655555544 4
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCChhH-HHHHHHHHhcchH
Q 002846 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPST-ADVIAKWFNSKEA 507 (874)
Q Consensus 436 G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~T-~~~I~~~~~s~~~ 507 (874)
+.+.+|+-+|++|-++ ..|+..+.+-+..++...|++++|..++.+...+.-.. |+| .|.|....-.|+.
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d-petL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD-PETLANLIVLALHLGKD 257 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhCCC
Confidence 6899999999999863 46999999999999999999999999999998873332 443 4555544444443
No 119
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=93.46 E-value=1.5 Score=52.29 Aligned_cols=160 Identities=11% Similarity=0.031 Sum_probs=99.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCC
Q 002846 196 VELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDM 275 (874)
Q Consensus 196 ~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi 275 (874)
..|.+...+..+..|+.+++.+....... .-|.-+-+-|+ ..|.++.|.++|- +
T Consensus 737 kaieaai~akew~kai~ildniqdqk~~s--~yy~~iadhya----------n~~dfe~ae~lf~-------e------- 790 (1636)
T KOG3616|consen 737 KAIEAAIGAKEWKKAISILDNIQDQKTAS--GYYGEIADHYA----------NKGDFEIAEELFT-------E------- 790 (1636)
T ss_pred HHHHHHhhhhhhhhhHhHHHHhhhhcccc--ccchHHHHHhc----------cchhHHHHHHHHH-------h-------
Confidence 34455566677777888887776544322 23444444555 8899999999994 1
Q ss_pred CchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeec--------cccHHHHHHhhhcC-CCCcccccc
Q 002846 276 DNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL--------NSQLLDGRSNLERG-PDDQSRKKD 346 (874)
Q Consensus 276 ~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~--------~g~~~eA~~l~~~m-~pd~~ty~~ 346 (874)
.--++-.|.. |.+.|++++|.++-.+.. |-....+.|- .|+..+|..++-.+ .|
T Consensus 791 --~~~~~dai~m------y~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p------- 853 (1636)
T KOG3616|consen 791 --ADLFKDAIDM------YGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEP------- 853 (1636)
T ss_pred --cchhHHHHHH------HhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCc-------
Confidence 1124445566 999999999999876543 3344555564 78888888876554 44
Q ss_pred cccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 002846 347 WSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMV 410 (874)
Q Consensus 347 w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~ 410 (874)
...|.+|-+.|..++.+++.++-.-.-+ .-|--.+..-|-..|++..|..-|
T Consensus 854 ---------~~aiqmydk~~~~ddmirlv~k~h~d~l---~dt~~~f~~e~e~~g~lkaae~~f 905 (1636)
T KOG3616|consen 854 ---------DKAIQMYDKHGLDDDMIRLVEKHHGDHL---HDTHKHFAKELEAEGDLKAAEEHF 905 (1636)
T ss_pred ---------hHHHHHHHhhCcchHHHHHHHHhChhhh---hHHHHHHHHHHHhccChhHHHHHH
Confidence 4556788888888888877765321111 123333444455556665555544
No 120
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=93.42 E-value=1.7 Score=39.68 Aligned_cols=94 Identities=10% Similarity=-0.024 Sum_probs=73.9
Q ss_pred hHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----cccHHHHHH
Q 002846 357 IRLSEDAKKYAFQRGFEIYEKMCLDEV--PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----LRSYGPALS 430 (874)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~Gv--~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd----~~tYn~LI~ 430 (874)
.+...+.+.|+.++|.+.|+.+....- ......+..+...+.+.|+++.|...|+.+.... |+ ...+..+-.
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY--PKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC--CCCCcccHHHHHHHH
Confidence 445667789999999999999987531 1123466779999999999999999999988652 33 345666677
Q ss_pred HHHhCCChhHHHHHHHHHHHcC
Q 002846 431 VFCNNGDVDKACSVEEHMLEHG 452 (874)
Q Consensus 431 a~~k~G~~~~A~~l~~eM~~~G 452 (874)
.+.+.|+.++|...++++.+..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHC
Confidence 8889999999999999998864
No 121
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=93.38 E-value=23 Score=42.60 Aligned_cols=187 Identities=16% Similarity=0.173 Sum_probs=109.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChh
Q 002846 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (874)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~ 439 (874)
..+..+|++..|..++....+.. +-++-.|-+-++.-..+..++.|..+|.+-.. ..|..+.|.--+...--.++.+
T Consensus 592 ke~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~e 668 (913)
T KOG0495|consen 592 KEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVE 668 (913)
T ss_pred HHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHH
Confidence 44555667777777766666543 22566666666666666677777777665443 3455555554444444455666
Q ss_pred HHHHHHHHHHHc------------------------------C--CCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 440 KACSVEEHMLEH------------------------------G--VYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 440 ~A~~l~~eM~~~------------------------------G--v~P-d~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
+|.+++++-.+. | ..| .+..|-.|-+.=-+.|.+.+|..+|++-+-+
T Consensus 669 eA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 669 EALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 666555443221 1 123 3344555555555677888888888887766
Q ss_pred CCCCChh-HH-HHHHHHHhcchHHHhhhhhchhHHHHHHHh---hcCCcccccccCCCCCceeEeeccccccccccc
Q 002846 487 VRKVSPS-TA-DVIAKWFNSKEAARLGKKKWNESLIKDTME---NKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCC 558 (874)
Q Consensus 487 ~~~~sp~-T~-~~I~~~~~s~~~~~a~~~~~d~~~v~ea~~---~~G~~~~~m~~~G~~p~~vt~t~vl~~G~C~~c 558 (874)
.|.-. .| ..|.--.+.|....|. .++..|++ .+|-+|.+..|+-..|..-+- +++.--.|..-
T Consensus 749 --NPk~~~lwle~Ir~ElR~gn~~~a~------~lmakALQecp~sg~LWaEaI~le~~~~rkTk-s~DALkkce~d 816 (913)
T KOG0495|consen 749 --NPKNALLWLESIRMELRAGNKEQAE------LLMAKALQECPSSGLLWAEAIWLEPRPQRKTK-SIDALKKCEHD 816 (913)
T ss_pred --CCCcchhHHHHHHHHHHcCCHHHHH------HHHHHHHHhCCccchhHHHHHHhccCcccchH-HHHHHHhccCC
Confidence 55444 44 3366666666554443 34455555 457788888888888877655 34443455443
No 122
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=93.32 E-value=1.9 Score=53.15 Aligned_cols=125 Identities=10% Similarity=-0.039 Sum_probs=101.0
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHH-HHHHH
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA-LSVFC 433 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~P-d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~L-I~a~~ 433 (874)
-.|-......|+.++|..+++...+. .| +......+...+.+.+++++|....++.... .|+..+.-.+ =.++.
T Consensus 90 ~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~l~ 165 (694)
T PRK15179 90 VLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAKSWD 165 (694)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHH
Confidence 34446667789999999999998875 45 4667788999999999999999999998765 4665555444 45566
Q ss_pred hCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 434 NNGDVDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 434 k~G~~~~A~~l~~eM~~~Gv~Pd-~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
+.|+.++|.++|+.....+ |+ ...+..+=..+-..|+.++|...|+.-.+.
T Consensus 166 ~~g~~~~A~~~y~~~~~~~--p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 166 EIGQSEQADACFERLSRQH--PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HhcchHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8899999999999999843 44 678888888889999999999999988664
No 123
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=93.25 E-value=2.2 Score=45.50 Aligned_cols=124 Identities=11% Similarity=0.003 Sum_probs=97.2
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhC
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~ 435 (874)
+..+....+.|++.+|...|.+...- -++|..+||.+--+|.+.|+.++|..-|.+..+.-. -+...+|.|--.|.-.
T Consensus 104 ~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~ 181 (257)
T COG5010 104 AAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAP-NEPSIANNLGMSLLLR 181 (257)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHc
Confidence 34566777889999999999987754 378999999999999999999999999988776521 2345567777778889
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHH
Q 002846 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482 (874)
Q Consensus 436 G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~ 482 (874)
|+.+.|..++......+-. |...-.-|.-+....|++++|..+-..
T Consensus 182 gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 182 GDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred CCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhccc
Confidence 9999999999988876532 555556666677888999999887654
No 124
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=93.12 E-value=1.9 Score=52.27 Aligned_cols=216 Identities=13% Similarity=0.017 Sum_probs=119.2
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCC--------CC-HHHH
Q 002846 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQR-EGIK--------LG-QYHY 229 (874)
Q Consensus 160 ~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~-~Gi~--------pd-~~ty 229 (874)
+...|+.+.|++-..-+ +.. ..|.-|-..|.+..+++-|.-.+..|.. .|.+ |+ ...-
T Consensus 738 yvtiG~MD~AfksI~~I------kS~------~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eak 805 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFI------KSD------SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAK 805 (1416)
T ss_pred EEEeccHHHHHHHHHHH------hhh------HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhH
Confidence 34567788888887777 223 8999999999999999998888887763 2322 11 1111
Q ss_pred HHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHH
Q 002846 230 NVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNE 309 (874)
Q Consensus 230 n~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~e 309 (874)
.++ ++- ..|.+++|..++. .-. -|..|-+- |-..|.+++|+++-+.
T Consensus 806 vAv---LAi---------eLgMlEeA~~lYr-------~ck---------R~DLlNKl------yQs~g~w~eA~eiAE~ 851 (1416)
T KOG3617|consen 806 VAV---LAI---------ELGMLEEALILYR-------QCK---------RYDLLNKL------YQSQGMWSEAFEIAET 851 (1416)
T ss_pred HHH---HHH---------HHhhHHHHHHHHH-------HHH---------HHHHHHHH------HHhcccHHHHHHHHhh
Confidence 111 111 3477778887774 111 12223223 6667888888877665
Q ss_pred HHHcCCCCCeeeec-----cccHHHHHHhhhcC------------------------CCCcccccccccccCCccchHHH
Q 002846 310 KENLGQFSNGHMKL-----NSQLLDGRSNLERG------------------------PDDQSRKKDWSIDNQDADEIRLS 360 (874)
Q Consensus 310 M~~~Gi~Pd~~ty~-----~g~~~eA~~l~~~m------------------------~pd~~ty~~w~i~~~~~~n~lI~ 360 (874)
-.+-.+...-+-|. .+++..|++.|++- ..|...| .=+=.
T Consensus 852 ~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~-----------~WWgq 920 (1416)
T KOG3617|consen 852 KDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLY-----------SWWGQ 920 (1416)
T ss_pred ccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHH-----------HHHHH
Confidence 44444443333333 44455555555443 1122222 00112
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhH
Q 002846 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK 440 (874)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~ 440 (874)
.+-..|+++.|+.+|..-++ |=++++..|-.|+.++|-++-++-. |....-.|-..|-..|++.+
T Consensus 921 YlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~ 985 (1416)
T KOG3617|consen 921 YLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVK 985 (1416)
T ss_pred HHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHH
Confidence 23346777777777776553 4456666666666666666655421 22222235555555666666
Q ss_pred HHHHHHH
Q 002846 441 ACSVEEH 447 (874)
Q Consensus 441 A~~l~~e 447 (874)
|..+|-.
T Consensus 986 Av~FfTr 992 (1416)
T KOG3617|consen 986 AVKFFTR 992 (1416)
T ss_pred HHHHHHH
Confidence 6655543
No 125
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=93.02 E-value=1.2 Score=50.46 Aligned_cols=88 Identities=14% Similarity=0.047 Sum_probs=48.7
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCch
Q 002846 396 MAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGD 474 (874)
Q Consensus 396 ~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~P-d~~ty~~LI~~~~~~G~~d 474 (874)
.+...|++++|.++|++..+..- -+...|..+-.+|.+.|++++|...++...... | +...|..+-.+|...|+++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhCCHH
Confidence 34455556666666655554311 123344444455556666666666666655532 3 3445555555666667777
Q ss_pred HHHHHHHHHHhc
Q 002846 475 RVYYLLHKLRTS 486 (874)
Q Consensus 475 ~A~~ll~~M~~~ 486 (874)
+|...|++....
T Consensus 88 eA~~~~~~al~l 99 (356)
T PLN03088 88 TAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHh
Confidence 777777666654
No 126
>KOG3777 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.94 E-value=0.052 Score=61.92 Aligned_cols=103 Identities=17% Similarity=0.179 Sum_probs=76.1
Q ss_pred CcchhhhhhhhhccccC--CCChhhHHHHHHHHHHhCCCCCceEEEeccccccCCCCCChhhHHHHHHHHhcCceEecCC
Q 002846 604 PFEAVVDAANVGLYSQR--NFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPT 681 (874)
Q Consensus 604 pyDiVIDGaNv~~~~~~--~f~~~~l~~vv~~l~~~~~~~~~~lvvl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tp~ 681 (874)
-+-++|||-|||+-..| -|+...+...+.++.++.. +. .-+++...|-. +..|.+ ++.++.+...+-+||.
T Consensus 12 ~~P~~i~~~~~~ls~G~~~~f~~r~~~v~~~~~~~~~~-rd-~tv~~~~~r~e---~~~p~~--~l~~l~~~~~~~ftp~ 84 (443)
T KOG3777|consen 12 LRPVVIHGSNLALSQGNEEVFSCRGILVSVDWFLQRGH-RD-ITVLVPSWRKE---ATRPDA--ILRELEEKKILVFTPD 84 (443)
T ss_pred ccCceeeccchhhcccchhheecccceeehhhhhhhcc-cC-cchhchhhhhc---CCchHH--HHHHHHhccccccCCC
Confidence 35689999999986654 4677788888888887322 22 33444443322 224443 7788888888888987
Q ss_pred C--------CCccHHHHHHHHhcCceEEeCcccccccccc
Q 002846 682 G--------SNDDWYWLYAAIKFKCLLVTNDEMRDHTFQL 713 (874)
Q Consensus 682 ~--------s~DD~y~LyAa~~~~~~~vsnD~mRdH~~~l 713 (874)
. ..||||+.--|.+.+..|++||..||..-+.
T Consensus 85 ~~~~~~r~~c~~~rf~~~~~~~s~~~~~~~dn~rd~~le~ 124 (443)
T KOG3777|consen 85 RSIQGSRVICYDRRFSASLARESDGIVSLNDNYRDLILES 124 (443)
T ss_pred hhhccceeeeehhhhHhhhhccccceecCCchHHHHHhhc
Confidence 6 7999999999999999999999999987743
No 127
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=92.81 E-value=15 Score=46.55 Aligned_cols=127 Identities=17% Similarity=0.121 Sum_probs=86.7
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHH---HH
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS---VF 432 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~---a~ 432 (874)
-.+-.+|-+.|+.++|..+++++.+.. .-|..+.|-+.-.|+.. ++++|.+++.+....-+ +..-|+.+.. -+
T Consensus 120 ~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i--~~kq~~~~~e~W~k~ 195 (906)
T PRK14720 120 RTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI--KKKQYVGIEEIWSKL 195 (906)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH--hhhcchHHHHHHHHH
Confidence 345567778899999999999999877 55788899999999999 99999999887665511 2223333222 22
Q ss_pred HhC--CChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 433 CNN--GDVDKACSVEEHMLEH-GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 433 ~k~--G~~~~A~~l~~eM~~~-Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
|.. .+++.-..+.+.+... |..--..++-.|-..|-...+++++..+|..+.+.
T Consensus 196 ~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~ 252 (906)
T PRK14720 196 VHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH 252 (906)
T ss_pred HhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc
Confidence 221 2333334444444433 44445556666677788888899999999999887
No 128
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=92.66 E-value=23 Score=41.11 Aligned_cols=218 Identities=12% Similarity=0.040 Sum_probs=142.8
Q ss_pred ChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCC
Q 002846 165 NDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVV 244 (874)
Q Consensus 165 ~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~ 244 (874)
+..++...-+.| ...+....|+...+...|.+......-..+-.++.+-.+.+ -..--|..-|.-|
T Consensus 252 RIa~lr~ra~q~----p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~aa~YG~A~~~~-------- 317 (484)
T COG4783 252 RIADLRNRAEQS----PPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKRG--GLAAQYGRALQTY-------- 317 (484)
T ss_pred HHHHHHHHHHhC----CCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCcc--chHHHHHHHHHHH--------
Confidence 444555555555 22344456777777888877666555544444444433311 1223444444444
Q ss_pred cccCCCCHHHHHHHHhhcccCchhhhhcCCCC-chhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeec
Q 002846 245 KPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL 323 (874)
Q Consensus 245 ~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~-d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~ 323 (874)
..|..++|+..+. ++.. ..+ |..-+.....- +.+.++..+|.+.++.+... .|+...
T Consensus 318 ---~~~~~d~A~~~l~-------~L~~--~~P~N~~~~~~~~~i------~~~~nk~~~A~e~~~kal~l--~P~~~~-- 375 (484)
T COG4783 318 ---LAGQYDEALKLLQ-------PLIA--AQPDNPYYLELAGDI------LLEANKAKEAIERLKKALAL--DPNSPL-- 375 (484)
T ss_pred ---HhcccchHHHHHH-------HHHH--hCCCCHHHHHHHHHH------HHHcCChHHHHHHHHHHHhc--CCCccH--
Confidence 3577888888885 4544 344 44445555555 77888899999888888775 233211
Q ss_pred cccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 002846 324 NSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDG 403 (874)
Q Consensus 324 ~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~ 403 (874)
.+ -.+=..|.+.|+..+|..+++.-.... +-|...|..|.++|...|+.
T Consensus 376 -------------------l~-----------~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~ 424 (484)
T COG4783 376 -------------------LQ-----------LNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNR 424 (484)
T ss_pred -------------------HH-----------HHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCch
Confidence 11 233467888999999999999887653 66889999999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHH
Q 002846 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG--VYPEEPELEALLRVS 467 (874)
Q Consensus 404 d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~G--v~Pd~~ty~~LI~~~ 467 (874)
.+|..-..++ |...|+++.|...+....+.. -.|+..-|...|+..
T Consensus 425 ~~a~~A~AE~------------------~~~~G~~~~A~~~l~~A~~~~~~~~~~~aR~dari~~~ 472 (484)
T COG4783 425 AEALLARAEG------------------YALAGRLEQAIIFLMRASQQVKLGFPDWARADARIDQL 472 (484)
T ss_pred HHHHHHHHHH------------------HHhCCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 9998877664 556799999999888776652 235555555555544
No 129
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.56 E-value=0.91 Score=49.70 Aligned_cols=181 Identities=10% Similarity=-0.009 Sum_probs=107.3
Q ss_pred hhhcCChHHHHHHHHHHHHcCCCCCeeeec------cccHHHHHHhhhcC---CCCcccccccccccCCccchHHHHHHh
Q 002846 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKL------NSQLLDGRSNLERG---PDDQSRKKDWSIDNQDADEIRLSEDAK 364 (874)
Q Consensus 294 ~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~------~g~~~eA~~l~~~m---~pd~~ty~~w~i~~~~~~n~lI~~~~k 364 (874)
|-+.|.+.+|...|..-...--.||.+.|- ..+.+.|+.++.+. .|-.+||- .-+-.-+-.
T Consensus 233 ylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l----------~g~ARi~ea 302 (478)
T KOG1129|consen 233 YLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYL----------LGQARIHEA 302 (478)
T ss_pred HHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhh----------hhhHHHHHH
Confidence 788888999988888777765556655443 44555566666655 45555550 111122233
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHH
Q 002846 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSV 444 (874)
Q Consensus 365 ~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l 444 (874)
.++.++|.++++...+.. ..++....++...|.-.++++.|+..++++.+.|+. +..-|+.+=-+|.-.+.+|-++--
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 456667777776655432 335555666666677777777777777777777763 444455444444456667777666
Q ss_pred HHHHHHcCCCCCH--HHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 445 EEHMLEHGVYPEE--PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 445 ~~eM~~~Gv~Pd~--~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
|+.....--.|+. ..|--|=......|++.-|.+.|+--..+
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~ 424 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS 424 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc
Confidence 6665544333332 23444444445667777777777666555
No 130
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.46 E-value=29 Score=41.31 Aligned_cols=136 Identities=13% Similarity=0.190 Sum_probs=87.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH--------HHHHCCCCCCcccHHHHHHHHHhCCCh
Q 002846 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVK--------RMKSLGINPRLRSYGPALSVFCNNGDV 438 (874)
Q Consensus 367 ~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~--------~M~~~Gi~Pd~~tYn~LI~a~~k~G~~ 438 (874)
....|.+++...-+..-.-...+--+++......|+++.|.+++. .+.+.+..|-++. +++..|.+.++-
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~--aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVG--AIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHH--HHHHHHHhccCC
Confidence 466677777665554322234566667777889999999999999 6666677676554 467777888888
Q ss_pred hHHHHHHHHHHHc--CCCCCHHHHHHHHHH----HHhcCCchHHHHHHHHHHhcCCCCChhHH-HHHHHHHhcc
Q 002846 439 DKACSVEEHMLEH--GVYPEEPELEALLRV----SVEAGKGDRVYYLLHKLRTSVRKVSPSTA-DVIAKWFNSK 505 (874)
Q Consensus 439 ~~A~~l~~eM~~~--Gv~Pd~~ty~~LI~~----~~~~G~~d~A~~ll~~M~~~~~~~sp~T~-~~I~~~~~s~ 505 (874)
+.|-.++++.... .-.+......+++.- =.+.|..++|..+++++.... +.+.++. ..+.+++.-.
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d 506 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARLD 506 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcC
Confidence 8888888776532 111222333333333 357899999999999999851 2222233 3355655543
No 131
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.29 E-value=8 Score=48.26 Aligned_cols=252 Identities=10% Similarity=0.025 Sum_probs=154.1
Q ss_pred HHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcccCCCccc
Q 002846 170 YKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQRE--GIKLGQYHYNVLLYLCSSAAVGVVKPA 247 (874)
Q Consensus 170 ~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~--Gi~pd~~tyn~LL~a~~~~~~~~~~~~ 247 (874)
+.+.+..+..+..... |...-...+.++..++-..+-++++++..-. -+.-+.-.-|.||-...++.
T Consensus 967 RqLiDqVv~tal~E~~----dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad------- 1035 (1666)
T KOG0985|consen 967 RQLIDQVVQTALPETQ----DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKAD------- 1035 (1666)
T ss_pred HHHHHHHHHhcCCccC----ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcC-------
Confidence 3455555555543322 3334456678888999999999999998732 22223333344443333221
Q ss_pred CCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccH
Q 002846 248 KSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQL 327 (874)
Q Consensus 248 k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~ 327 (874)
-.+..+... -.+..+.++. -++ ...++..++|+.+|+...-.+-.-++..-+-+.+
T Consensus 1036 ----~trVm~YI~--------rLdnyDa~~i--a~i----------ai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~l 1091 (1666)
T KOG0985|consen 1036 ----RTRVMEYIN--------RLDNYDAPDI--AEI----------AIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSL 1091 (1666)
T ss_pred ----hHHHHHHHH--------HhccCCchhH--HHH----------HhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhH
Confidence 112222221 0111111111 111 2344567888888875433221111111114556
Q ss_pred HHHHHhhhcC-CCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 002846 328 LDGRSNLERG-PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMA 406 (874)
Q Consensus 328 ~eA~~l~~~m-~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A 406 (874)
+.|.++-++. +|. .| +.+-.+-.+.|.+.+|.+-|-+- -|...|.-+|+.+.+.|.+++-
T Consensus 1092 dRA~efAe~~n~p~--vW-----------sqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edL 1152 (1666)
T KOG0985|consen 1092 DRAYEFAERCNEPA--VW-----------SQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDL 1152 (1666)
T ss_pred HHHHHHHHhhCChH--HH-----------HHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHH
Confidence 6666665555 443 34 66777777888998988877442 3778999999999999999999
Q ss_pred HHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 002846 407 FDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (874)
Q Consensus 407 ~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~ 484 (874)
...+...++..-.|.+. +.||-+|++.+++.+..++.. -||......+=+-|...|.++.|.-++....
T Consensus 1153 v~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS 1221 (1666)
T KOG0985|consen 1153 VKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVS 1221 (1666)
T ss_pred HHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhh
Confidence 99887777777777665 469999999999877666552 2777777777777777777777766665543
No 132
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=92.09 E-value=0.35 Score=40.22 Aligned_cols=19 Identities=21% Similarity=0.408 Sum_probs=6.8
Q ss_pred HHHHhCCChhHHHHHHHHH
Q 002846 430 SVFCNNGDVDKACSVEEHM 448 (874)
Q Consensus 430 ~a~~k~G~~~~A~~l~~eM 448 (874)
.+|.+.|++++|.++++.+
T Consensus 33 ~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 33 QCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HHHHHTT-HHHHHHHHHCC
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 3333333333333333333
No 133
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=92.03 E-value=1.5 Score=42.73 Aligned_cols=86 Identities=12% Similarity=0.132 Sum_probs=64.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCC
Q 002846 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNE--ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (874)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~--~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~ 437 (874)
..+...|++++|...|+........|+. ...-.|...+...|++++|+..++....... ....+...=..|.+.|+
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~ 133 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGD 133 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCC
Confidence 6677889999999999999987733322 2344577888899999999999977443332 22344455577889999
Q ss_pred hhHHHHHHHH
Q 002846 438 VDKACSVEEH 447 (874)
Q Consensus 438 ~~~A~~l~~e 447 (874)
.++|...|+.
T Consensus 134 ~~~A~~~y~~ 143 (145)
T PF09976_consen 134 YDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHH
Confidence 9999999875
No 134
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=91.98 E-value=2.5 Score=43.70 Aligned_cols=107 Identities=11% Similarity=0.077 Sum_probs=82.7
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--hhHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMA-MSMGD--GDMAFDMVKRMKSLGINPRLRSYGPALSVF 432 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~-~~~G~--~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~ 432 (874)
..+-..|...|+.++|...|+...... +-|...+..+..++ ...|+ .++|.+++++..+..- -+...+..+-..+
T Consensus 77 ~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP-~~~~al~~LA~~~ 154 (198)
T PRK10370 77 ALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA-NEVTALMLLASDA 154 (198)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-CChhHHHHHHHHH
Confidence 666677889999999999999888764 33677888888764 67777 5999999999987742 2567777788888
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002846 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (874)
Q Consensus 433 ~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~ 466 (874)
.+.|++++|...|+.+.+.. .|+..-+ .+|..
T Consensus 155 ~~~g~~~~Ai~~~~~aL~l~-~~~~~r~-~~i~~ 186 (198)
T PRK10370 155 FMQADYAQAIELWQKVLDLN-SPRVNRT-QLVES 186 (198)
T ss_pred HHcCCHHHHHHHHHHHHhhC-CCCccHH-HHHHH
Confidence 99999999999999998753 3454443 34343
No 135
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=91.78 E-value=11 Score=42.17 Aligned_cols=107 Identities=9% Similarity=-0.027 Sum_probs=66.0
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhC
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~ 435 (874)
+..|.-+...|....|.++..+.+ .||..-|-..|++++..+++++-.++-.. .- ...-|-+.+.+|.+.
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHHHHHC
Confidence 344555666677666666655443 46777777777777777777765554322 11 236777777777777
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHH
Q 002846 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482 (874)
Q Consensus 436 G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~ 482 (874)
|+..+|..+...+ ++..-+..|.++|++.+|.+.--+
T Consensus 251 ~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 251 GNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777777666551 124555666777777776655433
No 136
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.55 E-value=11 Score=47.07 Aligned_cols=196 Identities=12% Similarity=0.069 Sum_probs=112.9
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhh
Q 002846 205 GDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYG 284 (874)
Q Consensus 205 G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~L 284 (874)
+.+++|.++-++-. .+..|+.|-.|-. ..|.+.+|.+-|- ...|.-.|--+
T Consensus 1089 ~~ldRA~efAe~~n------~p~vWsqlakAQL----------~~~~v~dAieSyi-------------kadDps~y~eV 1139 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCN------EPAVWSQLAKAQL----------QGGLVKDAIESYI-------------KADDPSNYLEV 1139 (1666)
T ss_pred hhHHHHHHHHHhhC------ChHHHHHHHHHHH----------hcCchHHHHHHHH-------------hcCCcHHHHHH
Confidence 45555555544322 2345555555555 5567777777662 22255568888
Q ss_pred hcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHh
Q 002846 285 SSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAK 364 (874)
Q Consensus 285 I~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k 364 (874)
|+. ..+.|.+++-...+...+.+.-+|.+- +.||-+|++
T Consensus 1140 i~~------a~~~~~~edLv~yL~MaRkk~~E~~id-----------------------------------~eLi~AyAk 1178 (1666)
T KOG0985|consen 1140 IDV------ASRTGKYEDLVKYLLMARKKVREPYID-----------------------------------SELIFAYAK 1178 (1666)
T ss_pred HHH------HHhcCcHHHHHHHHHHHHHhhcCccch-----------------------------------HHHHHHHHH
Confidence 888 888888888888776666655555432 456667777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--------------------CCCCCccc
Q 002846 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL--------------------GINPRLRS 424 (874)
Q Consensus 365 ~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~--------------------Gi~Pd~~t 424 (874)
.+++.+-.++. ..||..-.-.+=+-|...|.++.|.-++.....- .-.-+..|
T Consensus 1179 t~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~kt 1251 (1666)
T KOG0985|consen 1179 TNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKT 1251 (1666)
T ss_pred hchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhH
Confidence 77665554443 1245555555555555555555555444321100 01134556
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHH
Q 002846 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482 (874)
Q Consensus 425 Yn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~ 482 (874)
|--+-.+|...+.+.-| .|-.-.+.-......-||.-|-..|.+++...+++.
T Consensus 1252 WK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1252 WKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred HHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 66666666655555433 233334455666677788888888888887777654
No 137
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=91.48 E-value=7.6 Score=46.16 Aligned_cols=117 Identities=13% Similarity=0.123 Sum_probs=70.2
Q ss_pred HHHHHhcCCHHHHHHHHH------HHHHCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHH
Q 002846 359 LSEDAKKYAFQRGFEIYE------KMCLDEVPMN---EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429 (874)
Q Consensus 359 I~~~~k~g~~~~A~~lf~------~M~~~Gv~Pd---~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI 429 (874)
-..+..+|+.++|.++.- .+.+-+.+.| .-+.-.+..-+-+...+..|-++|..|-.. -.++
T Consensus 710 AEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiV 780 (1081)
T KOG1538|consen 710 AEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLV 780 (1081)
T ss_pred HHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHh
Confidence 344455566666655432 1112122222 233334444444566677888888877543 3467
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCHH-----------HHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEP-----------ELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 430 ~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~-----------ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
......+++.+|+.+-+...+ +.||+. -|.---.+|-++|+..+|.++++++..+
T Consensus 781 qlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 781 QLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 777888899999888877655 334332 2334446677888888888888887765
No 138
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=91.43 E-value=0.77 Score=49.34 Aligned_cols=86 Identities=10% Similarity=-0.003 Sum_probs=70.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----------------ChhHHHHHHHHHHHCCCCCCcccHHHH
Q 002846 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG----------------DGDMAFDMVKRMKSLGINPRLRSYGPA 428 (874)
Q Consensus 365 ~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G----------------~~d~A~~l~~~M~~~Gi~Pd~~tYn~L 428 (874)
.+.++-...-++.|++-|+.-|..+|+.||+.+-+.. .-+-+.+++++|...|+.||-.+-..|
T Consensus 85 R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~l 164 (406)
T KOG3941|consen 85 RTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDIL 164 (406)
T ss_pred cchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHH
Confidence 4567777888899999999999999999999876533 234588999999999999999999999
Q ss_pred HHHHHhCCC-hhHHHHHHHHHHH
Q 002846 429 LSVFCNNGD-VDKACSVEEHMLE 450 (874)
Q Consensus 429 I~a~~k~G~-~~~A~~l~~eM~~ 450 (874)
|.+|.+.+- +.+..++.--|.+
T Consensus 165 vn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 165 VNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHhccccccHHHHHHHHHhhhh
Confidence 999999885 3445555555544
No 139
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.32 E-value=12 Score=40.76 Aligned_cols=297 Identities=9% Similarity=-0.001 Sum_probs=162.8
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHH
Q 002846 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYN--VLLYLC 236 (874)
Q Consensus 159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn--~LL~a~ 236 (874)
.+.+..+..+|.+++..--+... + +......|=..|-..-++..|-..|+.+... -|...-|- -.-+.|
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p-~------~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSP-R------SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCc-c------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 44566778888888877633221 1 3366777777888889999999999988754 23333222 111111
Q ss_pred HhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCC-chhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcC-
Q 002846 237 SSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG- 314 (874)
Q Consensus 237 ~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~-d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~G- 314 (874)
+.+.+.+|+.+.. .|.+...+. -++-.-+.|.- ..+++-.+..+.++....|
T Consensus 90 -----------~A~i~ADALrV~~-------~~~D~~~L~~~~lqLqaAIkY--------se~Dl~g~rsLveQlp~en~ 143 (459)
T KOG4340|consen 90 -----------KACIYADALRVAF-------LLLDNPALHSRVLQLQAAIKY--------SEGDLPGSRSLVEQLPSENE 143 (459)
T ss_pred -----------HhcccHHHHHHHH-------HhcCCHHHHHHHHHHHHHHhc--------ccccCcchHHHHHhccCCCc
Confidence 3455667777763 222210010 11112222222 3455555555555554332
Q ss_pred ----CCCCeeeeccccHHHHHHhhhcC-----CCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCC-
Q 002846 315 ----QFSNGHMKLNSQLLDGRSNLERG-----PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVP- 384 (874)
Q Consensus 315 ----i~Pd~~ty~~g~~~eA~~l~~~m-----~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~- 384 (874)
+.-...-|..|+.+.|...|... -...+.| |..+.-| +.++.+.|+++..++.++|+.
T Consensus 144 Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAY-----------niALaHy-~~~qyasALk~iSEIieRG~r~ 211 (459)
T KOG4340|consen 144 ADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAY-----------NLALAHY-SSRQYASALKHISEIIERGIRQ 211 (459)
T ss_pred cchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHH-----------HHHHHHH-hhhhHHHHHHHHHHHHHhhhhc
Confidence 11112233366666666666654 1223344 6655544 567889999999999988764
Q ss_pred ------------CCHH--------HHHHHHHH-------HHhcCChhHHHHHHHHHHHCC-CCCCcccHHHHHHHHHhCC
Q 002846 385 ------------MNEA--------SLTAVGRM-------AMSMGDGDMAFDMVKRMKSLG-INPRLRSYGPALSVFCNNG 436 (874)
Q Consensus 385 ------------Pd~~--------tyn~LI~~-------~~~~G~~d~A~~l~~~M~~~G-i~Pd~~tYn~LI~a~~k~G 436 (874)
||+. .-++|+.+ +.+.|+.+.|.+-+-.|.-+. -..|.+|...+--.= ..+
T Consensus 212 HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~ 290 (459)
T KOG4340|consen 212 HPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDA 290 (459)
T ss_pred CCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccC
Confidence 2321 22344443 457788888888888875332 334555554332111 123
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCC-CCChhHHHHHHHHHhc
Q 002846 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVR-KVSPSTADVIAKWFNS 504 (874)
Q Consensus 437 ~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~-~~sp~T~~~I~~~~~s 504 (874)
+..+..+-+.-+....- --..||.-|+-.||++..++-|-+++-+=...-. ..+|-.|+.+.++...
T Consensus 291 ~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~ 358 (459)
T KOG4340|consen 291 RPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITC 358 (459)
T ss_pred CccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhC
Confidence 44444444444444322 3457888888899999999999888866433211 1223345555555443
No 140
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=91.18 E-value=37 Score=40.87 Aligned_cols=58 Identities=19% Similarity=0.115 Sum_probs=35.5
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE-LEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 427 ~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~t-y~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
.++..|-+.|+++.|....+....+ .|+.+. |.+=-+.++.+|++++|..++++-++.
T Consensus 376 ~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el 434 (700)
T KOG1156|consen 376 FLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL 434 (700)
T ss_pred HHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Confidence 3556666677777777777766653 354433 222235566677777777777776665
No 141
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=91.18 E-value=4.9 Score=40.25 Aligned_cols=111 Identities=17% Similarity=0.172 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHH
Q 002846 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR--LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPELEAL 463 (874)
Q Consensus 387 ~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd--~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd-~~ty~~L 463 (874)
...|..+...+...|++++|...|++.....-.+. ...|..+-..|.+.|+.++|...+.+.... .|+ ...+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHH
Confidence 34567777777888888888888888775532222 245666777788888888888888887764 243 4444455
Q ss_pred HHHHHhcCC--------------chHHHHHHHHHHhcCCCCChhHHHHHHHHHh
Q 002846 464 LRVSVEAGK--------------GDRVYYLLHKLRTSVRKVSPSTADVIAKWFN 503 (874)
Q Consensus 464 I~~~~~~G~--------------~d~A~~ll~~M~~~~~~~sp~T~~~I~~~~~ 503 (874)
-..+...|+ +++|.+++.+.... .|+.+..+..|.+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~----~p~~~~~~~~~~~ 162 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL----APNNYIEAQNWLK 162 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh----CchhHHHHHHHHH
Confidence 555555555 34555555555443 3444544555443
No 142
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=91.13 E-value=4.4 Score=47.31 Aligned_cols=127 Identities=15% Similarity=0.127 Sum_probs=101.7
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHH-HHHCCCCCCcccH-HHHHHHH
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKR-MKSLGINPRLRSY-GPALSVF 432 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~P-d~~tyn~LI~~~~~~G~~d~A~~l~~~-M~~~Gi~Pd~~tY-n~LI~a~ 432 (874)
-..|+.--+..-++.|..+|.+..+.+..+ ++.+++++|.-||. ++.+-|+++|+- |+.. +|.-.| ...++.+
T Consensus 370 ~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf---~d~p~yv~~YldfL 445 (656)
T KOG1914|consen 370 CQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKF---GDSPEYVLKYLDFL 445 (656)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhc---CCChHHHHHHHHHH
Confidence 567777778888899999999999988877 88899999988885 578889999975 3333 444444 4567778
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 433 CNNGDVDKACSVEEHMLEHGVYPEE--PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 433 ~k~G~~~~A~~l~~eM~~~Gv~Pd~--~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
...++-..|..+|+.....++.||. ..|..+|+.=..-|++.-+.++-+++...
T Consensus 446 ~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 446 SHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 8889999999999999888666654 78999999889999999998888887665
No 143
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=91.13 E-value=0.2 Score=43.93 Aligned_cols=80 Identities=15% Similarity=0.217 Sum_probs=43.4
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHH-HHHHHHHhCCChhHHH
Q 002846 365 KYAFQRGFEIYEKMCLDEVP-MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG-PALSVFCNNGDVDKAC 442 (874)
Q Consensus 365 ~g~~~~A~~lf~~M~~~Gv~-Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn-~LI~a~~k~G~~~~A~ 442 (874)
.|+++.|..+|+++....-. ++...+-.+..+|.+.|+.++|..+++. .+ ..|+..... .+-.+|.+.|+.++|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 35667777777777765321 2333444467777777777777777766 21 122221122 2234455667777777
Q ss_pred HHHHH
Q 002846 443 SVEEH 447 (874)
Q Consensus 443 ~l~~e 447 (874)
+++++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66654
No 144
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.09 E-value=13 Score=44.03 Aligned_cols=116 Identities=15% Similarity=0.176 Sum_probs=84.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHH--HHHHHH--h
Q 002846 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP--ALSVFC--N 434 (874)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~--LI~a~~--k 434 (874)
|+.+.+.|++++|...-..+...+ +-|...+-.=+-++.+.+.+++|+.+.+. . +-..+++. +=.+|| +
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~---~~~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---N---GALLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---c---chhhhcchhhHHHHHHHHH
Confidence 566778889999999999988766 55667777777888899999999966543 2 22223333 356777 6
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 435 NGDVDKACSVEEHMLEHGVYPEEP-ELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 435 ~G~~~~A~~l~~eM~~~Gv~Pd~~-ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
.+..++|...++ |+.++.. +...=-..|-+.|++++|+++++.+.++
T Consensus 92 lnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn 139 (652)
T KOG2376|consen 92 LNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN 139 (652)
T ss_pred cccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 789999998887 3334332 4443445567889999999999999776
No 145
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=90.97 E-value=3.7 Score=41.12 Aligned_cols=111 Identities=17% Similarity=0.171 Sum_probs=73.6
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHH
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN--EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVF 432 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd--~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd-~~tYn~LI~a~ 432 (874)
..+-..+...|++++|...|++.......+. ...+..+...+.+.|++++|...+.+.... .|+ ...+..+-..|
T Consensus 39 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 39 YRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 4444567788999999999999886543332 468889999999999999999999988765 344 44445555566
Q ss_pred HhCCC--------------hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 002846 433 CNNGD--------------VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472 (874)
Q Consensus 433 ~k~G~--------------~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~ 472 (874)
...|+ +++|.+++..... .+...|..++.-+...|+
T Consensus 117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~----~~p~~~~~~~~~~~~~~~ 166 (172)
T PRK02603 117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR----LAPNNYIEAQNWLKTTGR 166 (172)
T ss_pred HHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh----hCchhHHHHHHHHHhcCc
Confidence 66665 3445555555444 223335555555544443
No 146
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=90.91 E-value=0.51 Score=39.17 Aligned_cols=64 Identities=20% Similarity=0.295 Sum_probs=50.6
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHH
Q 002846 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429 (874)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI 429 (874)
.+.|++++|.++|+.+.... +-|...+-.|..+|.+.|++++|..+++.+... .|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 46789999999999998764 237778888999999999999999999998765 46655554443
No 147
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=90.80 E-value=1 Score=49.35 Aligned_cols=144 Identities=13% Similarity=0.069 Sum_probs=100.8
Q ss_pred hhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcC-CCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccch
Q 002846 279 GQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG-QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEI 357 (874)
Q Consensus 279 vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~G-i~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~ 357 (874)
.+|-.+|+. .-+.+.++.|..+|.+-...+ +...++.. .+
T Consensus 2 ~v~i~~m~~------~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~---------------------------------~A 42 (280)
T PF05843_consen 2 LVWIQYMRF------MRRTEGIEAARKVFKRARKDKRCTYHVYVA---------------------------------YA 42 (280)
T ss_dssp HHHHHHHHH------HHHHHHHHHHHHHHHHHHCCCCS-THHHHH---------------------------------HH
T ss_pred HHHHHHHHH------HHHhCChHHHHHHHHHHHcCCCCCHHHHHH---------------------------------HH
Confidence 346666666 667777999999999887543 11222111 44
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc----ccHHHHHHHHH
Q 002846 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL----RSYGPALSVFC 433 (874)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~----~tYn~LI~a~~ 433 (874)
+|. +...++.+.|..||+...+. +.-+...|...|+.+...++.+.|..+|++.... + |.. ..|...|..=.
T Consensus 43 ~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l-~~~~~~~~iw~~~i~fE~ 118 (280)
T PF05843_consen 43 LME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFERAISS-L-PKEKQSKKIWKKFIEFES 118 (280)
T ss_dssp HHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-S-SCHHHCHHHHHHHHHHHH
T ss_pred HHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-c-CchhHHHHHHHHHHHHHH
Confidence 443 33356777799999998875 4567888999999999999999999999998765 3 443 48999999999
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 002846 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVS 467 (874)
Q Consensus 434 k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~ 467 (874)
+.|+++.+..|.+.+.+. .|+...+..+++-|
T Consensus 119 ~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 119 KYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred HcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 999999999999998873 46544444444433
No 148
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=90.79 E-value=12 Score=36.04 Aligned_cols=122 Identities=9% Similarity=-0.011 Sum_probs=87.0
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhC
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~ 435 (874)
..+|..+...+.......+++.+...+ ..+...+|.||..|++.. .....+.+.. .++......++..|-+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 778999988999999999999999887 478889999999999864 3444445442 24555566688888888
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCchHHHHHHHHHHhcCCCCChhHHHHHHH
Q 002846 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA-GKGDRVYYLLHKLRTSVRKVSPSTADVIAK 500 (874)
Q Consensus 436 G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~-G~~d~A~~ll~~M~~~~~~~sp~T~~~I~~ 500 (874)
+-+++|..++..+.. |.-.+..+... ++.+.|.+.+.+- -.|+.|..+..
T Consensus 83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~ 133 (140)
T smart00299 83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLK 133 (140)
T ss_pred CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHH
Confidence 988888888887743 23334444444 7788888877651 23456655443
No 149
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=90.61 E-value=43 Score=39.72 Aligned_cols=123 Identities=9% Similarity=0.048 Sum_probs=90.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCccc----HHHHHHHHH
Q 002846 361 EDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL--GINPRLRS----YGPALSVFC 433 (874)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~Gv~P-d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~--Gi~Pd~~t----Yn~LI~a~~ 433 (874)
-|.+.+.++.|.+.|.+-.. +.| |...++-+--.....+.+.+|...|..-... .+.+.... ++.|=++|-
T Consensus 389 ey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R 466 (611)
T KOG1173|consen 389 EYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR 466 (611)
T ss_pred HHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH
Confidence 46668889999999977553 444 5667777666667788899999998876522 12222323 455557788
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 434 k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
+.+..++|...|+.-.... .-+..+|.++--.|...|+++.|.+.|++-...
T Consensus 467 kl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 467 KLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred HHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 8999999999998876642 347778888777788899999999999987754
No 150
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=90.61 E-value=6.8 Score=45.86 Aligned_cols=133 Identities=10% Similarity=0.042 Sum_probs=107.5
Q ss_pred CCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCC-CeeeeccccHHHHHHhhhcCCCCcccccccccccCC
Q 002846 275 MDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS-NGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQD 353 (874)
Q Consensus 275 i~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~P-d~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~ 353 (874)
+..+.+|-..|+. --+..-+..|..+|.+..+.+..+ .++.+
T Consensus 363 ~~~tLv~~~~mn~------irR~eGlkaaR~iF~kaR~~~r~~hhVfVa------------------------------- 405 (656)
T KOG1914|consen 363 IDLTLVYCQYMNF------IRRAEGLKAARKIFKKAREDKRTRHHVFVA------------------------------- 405 (656)
T ss_pred cCCceehhHHHHH------HHHhhhHHHHHHHHHHHhhccCCcchhhHH-------------------------------
Confidence 3356778888887 777888999999999999988776 55555
Q ss_pred ccchHHHHHHhcCCHHHHHHHHHH-HHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--cccHHHHH
Q 002846 354 ADEIRLSEDAKKYAFQRGFEIYEK-MCLDEVPMNEA-SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR--LRSYGPAL 429 (874)
Q Consensus 354 ~~n~lI~~~~k~g~~~~A~~lf~~-M~~~Gv~Pd~~-tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd--~~tYn~LI 429 (874)
+++|..+|. ++.+-|+++|+- |+..| |.. --...++-+...++-..|..+|++....++.|+ ...|..+|
T Consensus 406 --~A~mEy~cs-kD~~~AfrIFeLGLkkf~---d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l 479 (656)
T KOG1914|consen 406 --AALMEYYCS-KDKETAFRIFELGLKKFG---DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRML 479 (656)
T ss_pred --HHHHHHHhc-CChhHHHHHHHHHHHhcC---CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHH
Confidence 899998886 556789999985 44444 433 346788888999999999999999998877666 58999999
Q ss_pred HHHHhCCChhHHHHHHHHHHH
Q 002846 430 SVFCNNGDVDKACSVEEHMLE 450 (874)
Q Consensus 430 ~a~~k~G~~~~A~~l~~eM~~ 450 (874)
..=..-|++..+.++-+.+..
T Consensus 480 ~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 480 EYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHhcccHHHHHHHHHHHHH
Confidence 999999999999999888764
No 151
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=90.40 E-value=3.5 Score=46.74 Aligned_cols=100 Identities=14% Similarity=0.158 Sum_probs=80.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CcccHHHHHHHHHhCCCh
Q 002846 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDV 438 (874)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~P-d~~tYn~LI~a~~k~G~~ 438 (874)
..+...|++++|+++|++..... +-+...|..+..+|.+.|++++|+..+++.... .| +...|..+-.+|...|++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCCH
Confidence 45567899999999999998764 346778899999999999999999999998875 34 456677777888999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHH
Q 002846 439 DKACSVEEHMLEHGVYPEEPELEALL 464 (874)
Q Consensus 439 ~~A~~l~~eM~~~Gv~Pd~~ty~~LI 464 (874)
++|...|+...+. .|+......++
T Consensus 87 ~eA~~~~~~al~l--~P~~~~~~~~l 110 (356)
T PLN03088 87 QTAKAALEKGASL--APGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 9999999998874 36655544443
No 152
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=90.31 E-value=1.1 Score=43.43 Aligned_cols=70 Identities=20% Similarity=0.287 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHH-----HcCCCCCHHH
Q 002846 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHML-----EHGVYPEEPE 459 (874)
Q Consensus 389 tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~-----~~Gv~Pd~~t 459 (874)
+...++..+...|++++|..+...+.... +-|...|-.+|.+|...|+..+|.++|+.+. +-|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 44555666666777777777776666542 2355566666777777777777766666653 2366665544
No 153
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=90.15 E-value=8.5 Score=45.94 Aligned_cols=139 Identities=9% Similarity=-0.016 Sum_probs=94.2
Q ss_pred chHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC--------ChhHHHHHHHHHHHC-CCCC
Q 002846 356 EIRLSEDAKKY-----AFQRGFEIYEKMCLDEVPMN-EASLTAVGRMAMSMG--------DGDMAFDMVKRMKSL-GINP 420 (874)
Q Consensus 356 n~lI~~~~k~g-----~~~~A~~lf~~M~~~Gv~Pd-~~tyn~LI~~~~~~G--------~~d~A~~l~~~M~~~-Gi~P 420 (874)
...+.+..... ....|.++|++..+. .|| ...|..+..++.... ++..+.+........ ....
T Consensus 341 ~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~ 418 (517)
T PRK10153 341 TLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNV 418 (517)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcC
Confidence 67776654432 377999999998876 455 344444433333221 223344444433222 1223
Q ss_pred CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCChhHHHHHHH
Q 002846 421 RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAK 500 (874)
Q Consensus 421 d~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~T~~~I~~ 500 (874)
+...|..+-..+...|+.++|...++...+.+ |+...|..+-..+...|+.++|.+.+.+-... .|...||-.+..
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~pt~~~~~~ 494 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGENTLYWIEN 494 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCchHHHHHh
Confidence 44667766555556799999999999999866 88999999999999999999999999998776 676667755443
No 154
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=89.89 E-value=0.4 Score=42.00 Aligned_cols=80 Identities=19% Similarity=0.231 Sum_probs=56.0
Q ss_pred cCChhHHHHHHHHHHHCCC-CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCchHHH
Q 002846 400 MGDGDMAFDMVKRMKSLGI-NPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE-PELEALLRVSVEAGKGDRVY 477 (874)
Q Consensus 400 ~G~~d~A~~l~~~M~~~Gi-~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~-~ty~~LI~~~~~~G~~d~A~ 477 (874)
.|+++.|..+++++.+..- .|+...+-.+-.+|.+.|+.++|..+++. .. +.|.. ...-.+-.+|.+.|+.++|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 5789999999999987632 12333344477888999999999999988 22 22333 33334456678899999999
Q ss_pred HHHHH
Q 002846 478 YLLHK 482 (874)
Q Consensus 478 ~ll~~ 482 (874)
.+|.+
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 99875
No 155
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=89.86 E-value=5.4 Score=45.90 Aligned_cols=181 Identities=13% Similarity=0.119 Sum_probs=126.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCCeee---ec-----cccHHHHHHhhhcC---CCCc-ccccccccccCCccchHHHHHHh
Q 002846 297 SYRFDDLDSTFNEKENLGQFSNGHM---KL-----NSQLLDGRSNLERG---PDDQ-SRKKDWSIDNQDADEIRLSEDAK 364 (874)
Q Consensus 297 ~g~~e~A~~lf~eM~~~Gi~Pd~~t---y~-----~g~~~eA~~l~~~m---~pd~-~ty~~w~i~~~~~~n~lI~~~~k 364 (874)
.+.+..|..+|+....-. ..+..- |. +..+.+|..++++. -|-+ ..| ---+.+--.
T Consensus 86 q~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlW-----------yKY~ymEE~ 153 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLW-----------YKYIYMEEM 153 (677)
T ss_pred HHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHH-----------HHHHHHHHH
Confidence 345567777777665432 111111 11 66778888888775 3322 222 233444456
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHH
Q 002846 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSV 444 (874)
Q Consensus 365 ~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l 444 (874)
.|++..|..+|+.-.+ ..|+...|.+.|+.=.+-..++.|..+++..+-. .|++.+|---...=-++|.+..|..+
T Consensus 154 LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 154 LGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred hcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 7899999999987665 4799999999999999999999999999988754 59999998888877889999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHH----HhcCCchHHHHHHHHHHhcCCCCChhHHHH
Q 002846 445 EEHMLEHGVYPEEPELEALLRVS----VEAGKGDRVYYLLHKLRTSVRKVSPSTADV 497 (874)
Q Consensus 445 ~~eM~~~Gv~Pd~~ty~~LI~~~----~~~G~~d~A~~ll~~M~~~~~~~sp~T~~~ 497 (874)
|+...+. .-|...-..|+-++ .++..+++|.-++..-..+ -|+..+-.+
T Consensus 230 yerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~--~pk~raeeL 282 (677)
T KOG1915|consen 230 YERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH--IPKGRAEEL 282 (677)
T ss_pred HHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcccHHHH
Confidence 9877653 12334444455555 4566788888888888777 555444433
No 156
>PLN02789 farnesyltranstransferase
Probab=89.77 E-value=38 Score=37.87 Aligned_cols=209 Identities=12% Similarity=0.035 Sum_probs=118.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcccCCCcccCCC-CHHHHHHHHhhcccCchhhhhcCCCC
Q 002846 199 DMCSKRGDVMGAIRLYDKAQREGIKLGQY-HYNVLLYLCSSAAVGVVKPAKSG-SGMRTLDTFEVSTMNSTELGDSRDMD 276 (874)
Q Consensus 199 ~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~-tyn~LL~a~~~~~~~~~~~~k~G-~~~~A~~vf~v~~~~s~em~~~~gi~ 276 (874)
..+...++.++|+.+++++.+. .|+.+ .|+.-=.++. +.| .+++++..++ ++... .-.
T Consensus 45 a~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~----------~L~~~l~eeL~~~~-------~~i~~-npk 104 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLE----------ALDADLEEELDFAE-------DVAED-NPK 104 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHH----------HcchhHHHHHHHHH-------HHHHH-CCc
Confidence 3345567888999999998853 34433 2322222222 234 4677777774 33322 222
Q ss_pred chhhhHhhhcCcccChhhhhcCC--hHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCc
Q 002846 277 NNGQLDYGSSPMIDKLESNSSYR--FDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDA 354 (874)
Q Consensus 277 d~vtyn~LI~~~~~~~~~~~~g~--~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~ 354 (874)
+...|+-.--. +.+.|. .++++.++++|.+.. .-.|+.|
T Consensus 105 nyqaW~~R~~~------l~~l~~~~~~~el~~~~kal~~d--------------------------pkNy~AW------- 145 (320)
T PLN02789 105 NYQIWHHRRWL------AEKLGPDAANKELEFTRKILSLD--------------------------AKNYHAW------- 145 (320)
T ss_pred chHHhHHHHHH------HHHcCchhhHHHHHHHHHHHHhC--------------------------cccHHHH-------
Confidence 44445533222 222333 245666666665542 1111222
Q ss_pred cchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCh----hHHHHHHHHHHHCCCCCCcccHHH
Q 002846 355 DEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM---GDG----DMAFDMVKRMKSLGINPRLRSYGP 427 (874)
Q Consensus 355 ~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~---G~~----d~A~~l~~~M~~~Gi~Pd~~tYn~ 427 (874)
+-.--.+.+.|.+++|++.+++|.+.+. -|...|+-....+.+. |.. +++.+....+.... +-|...|+-
T Consensus 146 -~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Y 222 (320)
T PLN02789 146 -SHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRY 222 (320)
T ss_pred -HHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHH
Confidence 2222334455779999999999998763 3556676665555544 222 45666665555542 235677777
Q ss_pred HHHHHHhC----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 002846 428 ALSVFCNN----GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA 470 (874)
Q Consensus 428 LI~a~~k~----G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~ 470 (874)
+-..|... +...+|.+++.+....+ ..+......|++.|+..
T Consensus 223 l~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 223 LRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhh
Confidence 77777763 34466888888866643 34567788899999863
No 157
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=89.22 E-value=4.7 Score=46.05 Aligned_cols=136 Identities=15% Similarity=0.148 Sum_probs=109.2
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccH-HHHHHHHH
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDE-VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY-GPALSVFC 433 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~G-v~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tY-n~LI~a~~ 433 (874)
-+.|+...+..-++.|..+|-+..+.| +.+++..|+++|.-+|. |+...|..+|+-=... -||...| +-.+..+.
T Consensus 401 C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi 477 (660)
T COG5107 401 CVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLLFLI 477 (660)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHHHHH
Confidence 667888888889999999999999999 67999999999998875 6788899999753222 3666655 45677788
Q ss_pred hCCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCChhHHHH
Q 002846 434 NNGDVDKACSVEEHMLEHGVYPE--EPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV 497 (874)
Q Consensus 434 k~G~~~~A~~l~~eM~~~Gv~Pd--~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~T~~~ 497 (874)
..++-+.|..+|+.-..+ +.-+ ...|..||+-=..-|++.-|+.+=++|... .|..++..+
T Consensus 478 ~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~ev 540 (660)
T COG5107 478 RINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEV 540 (660)
T ss_pred HhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHH
Confidence 899999999999955432 1222 568999999999999999999999999988 777776555
No 158
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=89.03 E-value=14 Score=45.68 Aligned_cols=109 Identities=11% Similarity=0.047 Sum_probs=86.7
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcc-cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHH-
Q 002846 383 VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR-SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL- 460 (874)
Q Consensus 383 v~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~-tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty- 460 (874)
...+...+-.|.+.....|..++|..+++...+. .||.. ....+...+.+.+++++|....+...... |+..+.
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~~~~~~ 157 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--SSSAREI 157 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CCCHHHH
Confidence 4556889999999999999999999999998764 67754 44557788889999999999999998865 766554
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhcCCCCC-hhHHHH
Q 002846 461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVS-PSTADV 497 (874)
Q Consensus 461 ~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~s-p~T~~~ 497 (874)
..+-.++.+.|+.++|..+|++.... .+. ++++..
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~ 193 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVG 193 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHH
Confidence 44555667889999999999999985 544 334433
No 159
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=88.96 E-value=1.1 Score=43.51 Aligned_cols=68 Identities=16% Similarity=0.264 Sum_probs=52.5
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCccc
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKS-----LGINPRLRS 424 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~-----~Gi~Pd~~t 424 (874)
..++..+...|+.++|..+...+.... +.|+..|-.+|++|...|+..+|.++|+.+.. .|+.|+..+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 556777888999999999999998865 56899999999999999999999999998753 488887654
No 160
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=88.35 E-value=5.8 Score=39.49 Aligned_cols=55 Identities=13% Similarity=0.127 Sum_probs=26.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 002846 361 EDAKKYAFQRGFEIYEKMCLDEVPM--NEASLTAVGRMAMSMGDGDMAFDMVKRMKS 415 (874)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~Gv~P--d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~ 415 (874)
.+...|++++|...|+........| ...+|..+-..+...|+.++|...++....
T Consensus 44 ~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 44 SAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3334455555555555544332111 123455555555555555555555555443
No 161
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=88.27 E-value=9.3 Score=41.47 Aligned_cols=103 Identities=9% Similarity=-0.004 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc----ccHHHHHHHHHhCCChhHHHHHHHHHHHcC--CCCCHHHH
Q 002846 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL----RSYGPALSVFCNNGDVDKACSVEEHMLEHG--VYPEEPEL 460 (874)
Q Consensus 387 ~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~----~tYn~LI~a~~k~G~~~~A~~l~~eM~~~G--v~Pd~~ty 460 (874)
...|...+..+.+.|++++|...|+.+.+. .|+. ..+--+-..|...|+.++|...|+.+...- -......+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 455777776667779999999999988875 3554 244446677888899999999999987642 11112333
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhcCCCCChh
Q 002846 461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (874)
Q Consensus 461 ~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~ 493 (874)
-.+...+...|+.++|..+|+.+.+. .|...
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~--yP~s~ 251 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKK--YPGTD 251 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence 33445566889999999999999887 66654
No 162
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=88.15 E-value=11 Score=35.90 Aligned_cols=101 Identities=12% Similarity=0.075 Sum_probs=61.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCccc---HHH-HHHHHHhC
Q 002846 362 DAKKYAFQRGFEIYEKMCLDEVPMN--EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS---YGP-ALSVFCNN 435 (874)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~Gv~Pd--~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~t---Yn~-LI~a~~k~ 435 (874)
+-..|+.++|..+|++-...|.... ...+-.+-..+-..|++++|..+|++.... .|+... ... +--++...
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHHC
Confidence 3456788888888888777776544 234455666677788888888888776654 243111 111 11244566
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 002846 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468 (874)
Q Consensus 436 G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~ 468 (874)
|+.++|.+.+-.... ++...|.--|..|+
T Consensus 89 gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 89 GRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred CCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 777777777655444 44446665555554
No 163
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=87.52 E-value=7.6 Score=44.49 Aligned_cols=146 Identities=12% Similarity=0.042 Sum_probs=111.0
Q ss_pred hhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcC-CCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccc
Q 002846 278 NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG-QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADE 356 (874)
Q Consensus 278 ~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~G-i~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n 356 (874)
...|...|+. .-+...++.|..+|.+....| +.++++.| +
T Consensus 397 t~v~C~~~N~------v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~---------------------------------~ 437 (660)
T COG5107 397 TFVFCVHLNY------VLRKRGLEAARKLFIKLRKEGIVGHHVYIY---------------------------------C 437 (660)
T ss_pred hhHHHHHHHH------HHHHhhHHHHHHHHHHHhccCCCCcceeee---------------------------------H
Confidence 3457888888 778888999999999999999 67788787 9
Q ss_pred hHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--cccHHHHHHHHH
Q 002846 357 IRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASL-TAVGRMAMSMGDGDMAFDMVKRMKSLGINPR--LRSYGPALSVFC 433 (874)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~ty-n~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd--~~tYn~LI~a~~ 433 (874)
++|..+|. |+..-|..+|+-=... -||...| +-.+.-+...++-+.|..+|+.-..+ +.-+ ...|-.+|.-=.
T Consensus 438 A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs 513 (660)
T COG5107 438 AFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYES 513 (660)
T ss_pred HHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHH
Confidence 99988775 5667899999853332 2455554 56777788899999999999954433 2223 468999999999
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 002846 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468 (874)
Q Consensus 434 k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~ 468 (874)
+-|++..|..+-+.|.+ +.|-..+-.....-|.
T Consensus 514 ~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ 546 (660)
T COG5107 514 MVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYA 546 (660)
T ss_pred hhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHh
Confidence 99999999999888877 4576666665555554
No 164
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=87.40 E-value=3.2 Score=45.38 Aligned_cols=119 Identities=18% Similarity=0.234 Sum_probs=72.4
Q ss_pred cCCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHhc-CChhHHHHHHHHHHHC----CCCCC--cccHHHHHHH
Q 002846 365 KYAFQRGFEIYEKMCL----DEVPMN--EASLTAVGRMAMSM-GDGDMAFDMVKRMKSL----GINPR--LRSYGPALSV 431 (874)
Q Consensus 365 ~g~~~~A~~lf~~M~~----~Gv~Pd--~~tyn~LI~~~~~~-G~~d~A~~l~~~M~~~----Gi~Pd--~~tYn~LI~a 431 (874)
..++++|.+.+++... .| .|+ ..++..+-..|-.. |++++|.+.|++-... | .+. ..++.-+...
T Consensus 87 ~~~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 87 KGDPDEAIECYEKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADL 164 (282)
T ss_dssp HTTHHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred hhCHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHH
Confidence 3355666655554432 22 222 22455566667777 8999999888765432 3 121 3445567788
Q ss_pred HHhCCChhHHHHHHHHHHHcCCC-----CCHHH--HHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 432 FCNNGDVDKACSVEEHMLEHGVY-----PEEPE--LEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 432 ~~k~G~~~~A~~l~~eM~~~Gv~-----Pd~~t--y~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
+.+.|++++|.++|++....-+. .+... +.++| ++...|+...|...|++....
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l-~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAIL-CHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHH-HHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhh
Confidence 89999999999999998765332 22322 23444 445578999999999998876
No 165
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=87.18 E-value=35 Score=37.77 Aligned_cols=68 Identities=12% Similarity=0.114 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhc-CC--hhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCC
Q 002846 369 QRGFEIYEKMCLDEVPMNEA-SLTAVGRMAMSM-GD--GDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (874)
Q Consensus 369 ~~A~~lf~~M~~~Gv~Pd~~-tyn~LI~~~~~~-G~--~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~ 437 (874)
+++..+|+.+...|+..+-. -+.+-|-+++.. .. +..+.++++.+++.|+++....|. +|..++-.++
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp-~lGlLall~~ 231 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYP-TLGLLALLED 231 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccccccc-HHHHHHhcCC
Confidence 45666777777766655322 222333333322 22 346777888888888887777765 4555554443
No 166
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=87.16 E-value=77 Score=39.61 Aligned_cols=220 Identities=11% Similarity=0.055 Sum_probs=134.3
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhh
Q 002846 202 SKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQL 281 (874)
Q Consensus 202 ~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vty 281 (874)
...+++..|+.......+. -|| ..|..++.|+... +.|+.++|...++ -.+..+..|..|.
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn-~~~a~vLkaLsl~--------r~gk~~ea~~~Le--------~~~~~~~~D~~tL 80 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPN-ALYAKVLKALSLF--------RLGKGDEALKLLE--------ALYGLKGTDDLTL 80 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCC-cHHHHHHHHHHHH--------HhcCchhHHHHHh--------hhccCCCCchHHH
Confidence 4567888899888887753 244 4577788888754 6789999998774 2222233488889
Q ss_pred HhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHH
Q 002846 282 DYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSE 361 (874)
Q Consensus 282 n~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~ 361 (874)
.++-.. |.+.++.++|..+++..... -|+..-. ..+..+
T Consensus 81 q~l~~~------y~d~~~~d~~~~~Ye~~~~~--~P~eell---------------------------------~~lFma 119 (932)
T KOG2053|consen 81 QFLQNV------YRDLGKLDEAVHLYERANQK--YPSEELL---------------------------------YHLFMA 119 (932)
T ss_pred HHHHHH------HHHHhhhhHHHHHHHHHHhh--CCcHHHH---------------------------------HHHHHH
Confidence 999999 99999999999999977654 2321111 334455
Q ss_pred HHhcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----------ChhHHHHHHHHHHHCC-CCCCcccHH
Q 002846 362 DAKKYAFQR----GFEIYEKMCLDEVPMNEASLTAVGRMAMSMG----------DGDMAFDMVKRMKSLG-INPRLRSYG 426 (874)
Q Consensus 362 ~~k~g~~~~----A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G----------~~d~A~~l~~~M~~~G-i~Pd~~tYn 426 (874)
|.+.+.+.+ |+++++. ++-+...|=++|+...+.- -+..|.+.++.|.+.+ -.-...-.-
T Consensus 120 yvR~~~yk~qQkaa~~LyK~-----~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~ 194 (932)
T KOG2053|consen 120 YVREKSYKKQQKAALQLYKN-----FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEII 194 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHh-----CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHH
Confidence 555554433 4444432 2223444445555544321 1234555666666553 111111111
Q ss_pred HHHHHHHhCCChhHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 427 PALSVFCNNGDVDKACSVEE-HMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 427 ~LI~a~~k~G~~~~A~~l~~-eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
.-+..+-..|+.++|++++. ...+.-..-+...-+--++.+...+++.+..++-.++...
T Consensus 195 Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 195 LYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 12233445678889998884 4444444445555566777788888888888888888877
No 167
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=86.49 E-value=67 Score=36.85 Aligned_cols=263 Identities=9% Similarity=-0.013 Sum_probs=143.9
Q ss_pred HHHcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchh
Q 002846 201 CSKRGDVMGAIRLYDKAQR-EGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNG 279 (874)
Q Consensus 201 ~~k~G~~~~Al~lf~~M~~-~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~v 279 (874)
.|-.++-..|..++-.+.. .-++-|++....+-+.+. ..|+.++|...|.- ..|.+-..+...-
T Consensus 206 q~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~----------~~Gdn~~a~~~Fe~-----~~~~dpy~i~~MD 270 (564)
T KOG1174|consen 206 QMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLY----------YNGDYFQAEDIFSS-----TLCANPDNVEAMD 270 (564)
T ss_pred HHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhh----------hhcCchHHHHHHHH-----HhhCChhhhhhHH
Confidence 3445666666666666653 456677888888888888 78999999999951 1222221111112
Q ss_pred hhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcC-------CCCCeeeeccccHHHHHHhhhcC-CCCccccccccccc
Q 002846 280 QLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG-------QFSNGHMKLNSQLLDGRSNLERG-PDDQSRKKDWSIDN 351 (874)
Q Consensus 280 tyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~G-------i~Pd~~ty~~g~~~eA~~l~~~m-~pd~~ty~~w~i~~ 351 (874)
.|..| +.+.|+.+....+...+.... +..-.+.|-..+...|+.+-++- ..|.-..
T Consensus 271 ~Ya~L---------L~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~------- 334 (564)
T KOG1174|consen 271 LYAVL---------LGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNH------- 334 (564)
T ss_pred HHHHH---------HHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccc-------
Confidence 26556 566778877777777665432 22222333344555555554443 1111111
Q ss_pred CCccchHH--HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHH
Q 002846 352 QDADEIRL--SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429 (874)
Q Consensus 352 ~~~~n~lI--~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI 429 (874)
-..++ ..+...++.++|.=-|..-..-- +-+..+|-.|+..|...|.+.+|.-+-+...+. +.-+..+.. |+
T Consensus 335 ---~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~Lt-L~ 408 (564)
T KOG1174|consen 335 ---EALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLT-LF 408 (564)
T ss_pred ---hHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhh-hh
Confidence 12233 33445678888887777655431 236678888888888888888877665543322 112222222 22
Q ss_pred HH---HHhCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCChhHHHHHHHHHhc
Q 002846 430 SV---FCNNGDVDKACSVEEHMLEHGVYPEEP-ELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNS 504 (874)
Q Consensus 430 ~a---~~k~G~~~~A~~l~~eM~~~Gv~Pd~~-ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~T~~~I~~~~~s 504 (874)
.+ +-.-.--++|..+++.-.. +.|+-. .-+.+-..|...|...++..+++.-... .+.-+.-+.+-..+..
T Consensus 409 g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A 483 (564)
T KOG1174|consen 409 GTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRA 483 (564)
T ss_pred cceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHH
Confidence 11 1111223566666655433 234432 2344445566778888888888877665 4444433444444443
No 168
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=85.98 E-value=12 Score=41.31 Aligned_cols=128 Identities=16% Similarity=0.143 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cC----ChhHHHHHHHHHHHCC---CCCCcccHHHHHHHHHhCCC-
Q 002846 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS--MG----DGDMAFDMVKRMKSLG---INPRLRSYGPALSVFCNNGD- 437 (874)
Q Consensus 368 ~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~--~G----~~d~A~~l~~~M~~~G---i~Pd~~tYn~LI~a~~k~G~- 437 (874)
+++..++++.|++.|+.-+..+|-+..-.... .. ....|..+++.|++.. ..++...+..||.. ...+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 66778899999999999998887663333333 22 3567999999999875 34778888888776 3333
Q ss_pred ---hhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCC---chHHHHHHHHHHhcCCCCChhHHHH
Q 002846 438 ---VDKACSVEEHMLEHGVYPEEP-ELEALLRVSVEAGK---GDRVYYLLHKLRTSVRKVSPSTADV 497 (874)
Q Consensus 438 ---~~~A~~l~~eM~~~Gv~Pd~~-ty~~LI~~~~~~G~---~d~A~~ll~~M~~~~~~~sp~T~~~ 497 (874)
++.+..+|+.+...|+..+-. -+-+-|-+++.... ..++..+++.+.+++..+.+..|.+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~ 222 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPT 222 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccH
Confidence 356788888999888876443 33333333332211 4588999999999977666666554
No 169
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=85.68 E-value=11 Score=37.36 Aligned_cols=96 Identities=18% Similarity=0.082 Sum_probs=68.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 002846 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR--LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463 (874)
Q Consensus 386 d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd--~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~L 463 (874)
-...|..+...+...|++++|...|++.....-.|. ..+|..+=..|...|+.++|...++...... .....++..+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~l 112 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 355677788888889999999999998876532222 2467777788889999999999999887642 2233455556
Q ss_pred HHHHH-------hcCCchHHHHHHHH
Q 002846 464 LRVSV-------EAGKGDRVYYLLHK 482 (874)
Q Consensus 464 I~~~~-------~~G~~d~A~~ll~~ 482 (874)
...+. ..|+.++|...+.+
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 55665 66777765555543
No 170
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=84.67 E-value=2.9 Score=34.31 Aligned_cols=54 Identities=20% Similarity=0.265 Sum_probs=29.4
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 431 VFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 431 a~~k~G~~~~A~~l~~eM~~~Gv~P-d~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
.+...|++++|..+|+...+.. | +...+..+-..+...|++++|..+|++..+.
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455566666666666665544 3 3344444555555666666666666665543
No 171
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=84.67 E-value=22 Score=43.74 Aligned_cols=236 Identities=13% Similarity=0.126 Sum_probs=129.3
Q ss_pred CHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCch
Q 002846 190 EQFQLRVELD--MCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNST 267 (874)
Q Consensus 190 d~~tyn~LI~--a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~ 267 (874)
|..|-.++++ -|.--|+.++|.+-....+. ...|..|-+.|. +..+++-|.--+.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS------~~vW~nmA~McV----------kT~RLDVAkVClG------- 781 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCV----------KTRRLDVAKVCLG------- 781 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhh----------hhccccHHHHhhh-------
Confidence 4466677774 57788999999988877664 367888888888 4444444444332
Q ss_pred hhhhcCCCC-----------chhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhc
Q 002846 268 ELGDSRDMD-----------NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLER 336 (874)
Q Consensus 268 em~~~~gi~-----------d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~ 336 (874)
.|....|.. +..-...| -...|.+++|..+|.+-++..+. |-.--+.|++.+|.++-+.
T Consensus 782 hm~~aRgaRAlR~a~q~~~e~eakvAvL---------AieLgMlEeA~~lYr~ckR~DLl-NKlyQs~g~w~eA~eiAE~ 851 (1416)
T KOG3617|consen 782 HMKNARGARALRRAQQNGEEDEAKVAVL---------AIELGMLEEALILYRQCKRYDLL-NKLYQSQGMWSEAFEIAET 851 (1416)
T ss_pred hhhhhhhHHHHHHHHhCCcchhhHHHHH---------HHHHhhHHHHHHHHHHHHHHHHH-HHHHHhcccHHHHHHHHhh
Confidence 121111111 11111111 34567889999998877664211 0000016777777776443
Q ss_pred C--CCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHH----------HHCCC---------CCCHHHHHHHHH
Q 002846 337 G--PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKM----------CLDEV---------PMNEASLTAVGR 395 (874)
Q Consensus 337 m--~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M----------~~~Gv---------~Pd~~tyn~LI~ 395 (874)
- ..=-.|| ----..+-..++++.|++.|++- ..... .-|...|.---.
T Consensus 852 ~DRiHLr~Ty-----------y~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgq 920 (1416)
T KOG3617|consen 852 KDRIHLRNTY-----------YNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQ 920 (1416)
T ss_pred ccceehhhhH-----------HHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHH
Confidence 2 0001122 11112223345677777777642 11110 112333333333
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchH
Q 002846 396 MAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDR 475 (874)
Q Consensus 396 ~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~ 475 (874)
-+-..|++|.|+.++...+. |-+++...|-.|++++|-++-++- -|....--|-+.|-..|++.+
T Consensus 921 YlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~ 985 (1416)
T KOG3617|consen 921 YLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVK 985 (1416)
T ss_pred HHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHH
Confidence 33346666666666655433 345666667777777777776553 244445556677778888888
Q ss_pred HHHHHHHHH
Q 002846 476 VYYLLHKLR 484 (874)
Q Consensus 476 A~~ll~~M~ 484 (874)
|..+|.+.+
T Consensus 986 Av~FfTrAq 994 (1416)
T KOG3617|consen 986 AVKFFTRAQ 994 (1416)
T ss_pred HHHHHHHHH
Confidence 888887654
No 172
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=84.30 E-value=3.7 Score=33.70 Aligned_cols=54 Identities=17% Similarity=0.241 Sum_probs=33.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 002846 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKS 415 (874)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~ 415 (874)
.+.+.|++++|.++|+...+.. +-+...+..+-.++...|++++|..+|++..+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4556667777777777766654 22455666666666677777777777766654
No 173
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=84.22 E-value=44 Score=35.76 Aligned_cols=158 Identities=8% Similarity=-0.012 Sum_probs=91.3
Q ss_pred hhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHH
Q 002846 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (874)
Q Consensus 294 ~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~ 373 (874)
+.+.|++++|.+.|++.... -|+. .+ ...|. --+...+.+.++.++|..
T Consensus 42 ~~~~g~y~~Ai~~f~~l~~~--yP~s-~~----a~~a~------------------------l~la~ayy~~~~y~~A~~ 90 (243)
T PRK10866 42 KLQDGNWKQAITQLEALDNR--YPFG-PY----SQQVQ------------------------LDLIYAYYKNADLPLAQA 90 (243)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCC-hH----HHHHH------------------------HHHHHHHHhcCCHHHHHH
Confidence 55688999999999998875 2332 11 00010 123466778899999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHh-----------------cCC---hhHHHHHHHHHHHCCCCCCcccHH-------
Q 002846 374 IYEKMCLDEVPMNEASLTAVGRMAMS-----------------MGD---GDMAFDMVKRMKSLGINPRLRSYG------- 426 (874)
Q Consensus 374 lf~~M~~~Gv~Pd~~tyn~LI~~~~~-----------------~G~---~d~A~~l~~~M~~~Gi~Pd~~tYn------- 426 (874)
.|++..+.--.-..+-|.-.+.+.+. ..| ...|+..|+++.+. -|+..-..
T Consensus 91 ~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S~ya~~A~~rl~ 168 (243)
T PRK10866 91 AIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNSQYTTDATKRLV 168 (243)
T ss_pred HHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHH
Confidence 99988876433333455555555542 112 23455666666554 24432110
Q ss_pred -----------HHHHHHHhCCChhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 002846 427 -----------PALSVFCNNGDVDKACSVEEHMLEH--GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (874)
Q Consensus 427 -----------~LI~a~~k~G~~~~A~~l~~eM~~~--Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~ 484 (874)
.+-.-|-+.|....|..=|+.+.+. +........-.|+.+|.+.|..++|......+.
T Consensus 169 ~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 169 FLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1233456666666666666666654 334444555566666666677666666655443
No 174
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=83.93 E-value=1.1e+02 Score=37.09 Aligned_cols=267 Identities=12% Similarity=0.085 Sum_probs=146.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc------------CCCcccCCCCHHHHHHHH
Q 002846 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAV------------GVVKPAKSGSGMRTLDTF 259 (874)
Q Consensus 192 ~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~------------~~~~~~k~G~~~~A~~vf 259 (874)
..|++|-+-|.+.|+++.|..+|++..+. ...+.-|+.+.++|+.-.- .+..+...-+++-....|
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~ 326 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARF 326 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHH
Confidence 57999999999999999999999998754 3456778888888873110 000000011122222222
Q ss_pred hhcccCchhhhhcCCCC-----------chhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeec-----
Q 002846 260 EVSTMNSTELGDSRDMD-----------NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL----- 323 (874)
Q Consensus 260 ~v~~~~s~em~~~~gi~-----------d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~----- 323 (874)
+.++....+- |+-+|.--++. ..|+..+-...|.+.... +.|-...=+
T Consensus 327 -------e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--------~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw 390 (835)
T KOG2047|consen 327 -------ESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--------YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLW 390 (835)
T ss_pred -------HHHHhccchHHHHHHHhcCCccHHHHHhhhhh--------hcCChHHHHHHHHHHHHc-cCcccCCCChhhHH
Confidence 1222221111 23334333322 455566667777776554 333222111
Q ss_pred ---------cccHHHHHHhhhcC--CCCc------ccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHC-----
Q 002846 324 ---------NSQLLDGRSNLERG--PDDQ------SRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD----- 381 (874)
Q Consensus 324 ---------~g~~~eA~~l~~~m--~pd~------~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~----- 381 (874)
+|.+++|..+|+.. .|=. .+| -..-..-.+..+++.|+.+.+.-..-
T Consensus 391 ~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw-----------~~waemElrh~~~~~Al~lm~~A~~vP~~~~ 459 (835)
T KOG2047|consen 391 VEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVW-----------CAWAEMELRHENFEAALKLMRRATHVPTNPE 459 (835)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHH-----------HHHHHHHHhhhhHHHHHHHHHhhhcCCCchh
Confidence 88899999999887 2211 122 22223334555677777766543321
Q ss_pred -----CCCC-------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCc-ccHHHHHHHHHhCCChhHHHHHHHH
Q 002846 382 -----EVPM-------NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN-PRL-RSYGPALSVFCNNGDVDKACSVEEH 447 (874)
Q Consensus 382 -----Gv~P-------d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~-Pd~-~tYn~LI~a~~k~G~~~~A~~l~~e 447 (874)
|-.| +...|+-.++.--..|-++....+++.|....+. |-+ ..|.-+ +-.+..+++++++++.
T Consensus 460 ~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmf---LEeh~yfeesFk~YEr 536 (835)
T KOG2047|consen 460 LEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMF---LEEHKYFEESFKAYER 536 (835)
T ss_pred hhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHH---HHhhHHHHHHHHHHHc
Confidence 1111 2344566666666777788888888888766542 211 112111 2245667888888765
Q ss_pred HHHcCCCCCH-HHHHHHHHHHH-hcC--CchHHHHHHHHHHhcCCCCChh
Q 002846 448 MLEHGVYPEE-PELEALLRVSV-EAG--KGDRVYYLLHKLRTSVRKVSPS 493 (874)
Q Consensus 448 M~~~Gv~Pd~-~ty~~LI~~~~-~~G--~~d~A~~ll~~M~~~~~~~sp~ 493 (874)
=+.-=-.|++ ..|++-+.-+. +-| .+++|..||++..+. ++|.
T Consensus 537 gI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~---Cpp~ 583 (835)
T KOG2047|consen 537 GISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDG---CPPE 583 (835)
T ss_pred CCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc---CCHH
Confidence 3332223444 35565554443 333 578999999998884 4465
No 175
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=82.06 E-value=20 Score=44.38 Aligned_cols=120 Identities=18% Similarity=0.187 Sum_probs=92.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCCh
Q 002846 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAM--SMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDV 438 (874)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~--~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~ 438 (874)
.....+++..|+.....+.++ .|| ..|..++.++. +.|+.++|..+++.....+.. |..|...+-..|-..|..
T Consensus 18 d~ld~~qfkkal~~~~kllkk--~Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKK--HPN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHH--CCC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhh
Confidence 344567888999988877765 244 34556666654 789999999999988766554 889999999999999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 439 DKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 439 ~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
++|..+|++.... .|+..-...+..+|.|.+.+.+--+.=-+|-+.
T Consensus 94 d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~ 139 (932)
T KOG2053|consen 94 DEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN 139 (932)
T ss_pred hHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999998764 488888889999999998876544444444433
No 176
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.93 E-value=13 Score=39.93 Aligned_cols=135 Identities=12% Similarity=0.055 Sum_probs=101.4
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHH----
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV---- 431 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a---- 431 (874)
++++..+.-.+.+.-...++++..+..-+-+.+....|.+.-.+.||.+.|...|+...+..-+.|-.+++.++..
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 5666666566677778888999988877788899999999999999999999999988766555666666665542
Q ss_pred -HHhCCChhHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHhcCCchHHHHHHHHHHhcCCCCChhHHH
Q 002846 432 -FCNNGDVDKACSVEEHMLEHGVYPEEPEL---EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTAD 496 (874)
Q Consensus 432 -~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty---~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~T~~ 496 (874)
|.-..+...|...|++..... |....| -+|+..| .|+..+|.+.+..|... -|.|.+-+
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D--~~~~~a~NnKALcllY--lg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMD--PRNAVANNNKALCLLY--LGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred heecccchHHHHHHHhhccccC--CCchhhhchHHHHHHH--HHHHHHHHHHHHHHhcc--CCccchhh
Confidence 334578889999998887653 222222 3555555 58899999999999988 77776444
No 177
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=80.67 E-value=19 Score=35.90 Aligned_cols=83 Identities=10% Similarity=0.030 Sum_probs=34.4
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHH
Q 002846 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKAC 442 (874)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~ 442 (874)
...|++++|..+|+-+..-. .-+..-|-.|--++-..|++++|++.+........ -|.+.|-.+=.++...|+.+.|.
T Consensus 46 y~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~~A~ 123 (157)
T PRK15363 46 MEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVCYAI 123 (157)
T ss_pred HHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHHHH
Confidence 34455555555554444322 11222233333333344455555555544443321 22333333334444444444444
Q ss_pred HHHHH
Q 002846 443 SVEEH 447 (874)
Q Consensus 443 ~l~~e 447 (874)
+-|+.
T Consensus 124 ~aF~~ 128 (157)
T PRK15363 124 KALKA 128 (157)
T ss_pred HHHHH
Confidence 44443
No 178
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=80.59 E-value=20 Score=34.09 Aligned_cols=90 Identities=21% Similarity=0.203 Sum_probs=65.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCC--cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC---HHHH-HHHHHHH
Q 002846 394 GRMAMSMGDGDMAFDMVKRMKSLGINPR--LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE---EPEL-EALLRVS 467 (874)
Q Consensus 394 I~~~~~~G~~d~A~~l~~~M~~~Gi~Pd--~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd---~~ty-~~LI~~~ 467 (874)
..++-..|+.++|..++++-...|+... ...+--+=..|-..|+.++|..++++....- |+ .... ..+--++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHH
Confidence 3456678999999999999999887655 3345556677788999999999999887642 44 2121 2222356
Q ss_pred HhcCCchHHHHHHHHHHh
Q 002846 468 VEAGKGDRVYYLLHKLRT 485 (874)
Q Consensus 468 ~~~G~~d~A~~ll~~M~~ 485 (874)
...|+.++|+..+-....
T Consensus 86 ~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 788999999998876554
No 179
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=80.43 E-value=9.6 Score=31.82 Aligned_cols=17 Identities=18% Similarity=0.319 Sum_probs=6.8
Q ss_pred HhcCChhHHHHHHHHHH
Q 002846 398 MSMGDGDMAFDMVKRMK 414 (874)
Q Consensus 398 ~~~G~~d~A~~l~~~M~ 414 (874)
.+.+++++|.++++.+.
T Consensus 6 ~~~~~~~~A~~~~~~~l 22 (73)
T PF13371_consen 6 LQQEDYEEALEVLERAL 22 (73)
T ss_pred HhCCCHHHHHHHHHHHH
Confidence 33344444444444333
No 180
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=79.84 E-value=66 Score=34.64 Aligned_cols=119 Identities=16% Similarity=0.145 Sum_probs=89.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHH
Q 002846 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACS 443 (874)
Q Consensus 364 k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~ 443 (874)
-.|+-+.+..+...... ...-|......++....+.|++.+|...|.+.... -.+|...|+.+=.+|-+.|++++|..
T Consensus 78 ~~G~a~~~l~~~~~~~~-~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~Ar~ 155 (257)
T COG5010 78 LRGDADSSLAVLQKSAI-AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEARR 155 (257)
T ss_pred hcccccchHHHHhhhhc-cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHHHH
Confidence 34444444444443222 12335556677999999999999999999997654 56889999999999999999999999
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 444 VEEHMLEHGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 444 l~~eM~~~Gv~Pd-~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
-|....+- .|+ ...+|-|--.|.-.|+.+.|..+|..-...
T Consensus 156 ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 156 AYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred HHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 99887763 343 344555666667789999999999998887
No 181
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=79.16 E-value=47 Score=42.19 Aligned_cols=148 Identities=12% Similarity=0.066 Sum_probs=95.6
Q ss_pred chhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcC-CCCcccccccccccCCcc
Q 002846 277 NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERG-PDDQSRKKDWSIDNQDAD 355 (874)
Q Consensus 277 d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m-~pd~~ty~~w~i~~~~~~ 355 (874)
+...|-.||.. +...+++++|.++.++-.. ..|+...+- +..+. ++.+. ..+...-
T Consensus 30 n~~a~~~Li~~------~~~~~~~deai~i~~~~l~--~~P~~i~~y---y~~G~-l~~q~~~~~~~~l----------- 86 (906)
T PRK14720 30 KFKELDDLIDA------YKSENLTDEAKDICEEHLK--EHKKSISAL---YISGI-LSLSRRPLNDSNL----------- 86 (906)
T ss_pred hHHHHHHHHHH------HHhcCCHHHHHHHHHHHHH--hCCcceehH---HHHHH-HHHhhcchhhhhh-----------
Confidence 34458888888 9999999999999995444 467766552 22222 11111 1110000
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhC
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~ 435 (874)
-.+++......++.-+..+...|...+ -+...+-.|..+|-+.|+.++|..+++++.+.. .-|...-|-+=..|+..
T Consensus 87 v~~l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 87 LNLIDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE 163 (906)
T ss_pred hhhhhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh
Confidence 122233333344544455555565543 244578889999999999999999999999886 34566777777778877
Q ss_pred CChhHHHHHHHHHHHc
Q 002846 436 GDVDKACSVEEHMLEH 451 (874)
Q Consensus 436 G~~~~A~~l~~eM~~~ 451 (874)
++++|.+++......
T Consensus 164 -dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 164 -DKEKAITYLKKAIYR 178 (906)
T ss_pred -hHHHHHHHHHHHHHH
Confidence 888888888776554
No 182
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=78.90 E-value=10 Score=31.60 Aligned_cols=63 Identities=17% Similarity=0.174 Sum_probs=50.1
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCChhHHH
Q 002846 430 SVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTAD 496 (874)
Q Consensus 430 ~a~~k~G~~~~A~~l~~eM~~~Gv~P-d~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~T~~ 496 (874)
..|.+.+++++|.++++.+.... | +...|...=..+.+.|++++|...|+...+. .|...+..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALEL--SPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH--CCCcHHHH
Confidence 56889999999999999999864 4 4445555666778999999999999999987 66554443
No 183
>PLN02789 farnesyltranstransferase
Probab=78.19 E-value=1.2e+02 Score=33.90 Aligned_cols=210 Identities=8% Similarity=-0.009 Sum_probs=120.2
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCH-HHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 002846 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQ-FQLRVELDMCSKRG-DVMGAIRLYDKAQREGIKLGQYHYNVLLYLC 236 (874)
Q Consensus 159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~-~tyn~LI~a~~k~G-~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~ 236 (874)
.+.+..+...|+.+.+.++.. .|+- .+|+.-=..+.+.| ++++|+.+++++.+..-+ +..+|+-.-..+
T Consensus 46 ~l~~~e~serAL~lt~~aI~l--------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l 116 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRL--------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLA 116 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHH
Confidence 455667788999999988542 2332 24444333445556 689999999999876433 333455333233
Q ss_pred HhcccCCCcccCCCC--HHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcC
Q 002846 237 SSAAVGVVKPAKSGS--GMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG 314 (874)
Q Consensus 237 ~~~~~~~~~~~k~G~--~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~G 314 (874)
. +.|. .++++..++ .+.+. +-.|.-.|+-.-.. +...|++++|++.+++|.+..
T Consensus 117 ~----------~l~~~~~~~el~~~~-------kal~~-dpkNy~AW~~R~w~------l~~l~~~~eeL~~~~~~I~~d 172 (320)
T PLN02789 117 E----------KLGPDAANKELEFTR-------KILSL-DAKNYHAWSHRQWV------LRTLGGWEDELEYCHQLLEED 172 (320)
T ss_pred H----------HcCchhhHHHHHHHH-------HHHHh-CcccHHHHHHHHHH------HHHhhhHHHHHHHHHHHHHHC
Confidence 3 2333 245555553 44433 34467778877777 778899999999999998875
Q ss_pred CCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcC----CHHHHHHHHHHHHHCCCCCCHHHH
Q 002846 315 QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKY----AFQRGFEIYEKMCLDEVPMNEASL 390 (874)
Q Consensus 315 i~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g----~~~~A~~lf~~M~~~Gv~Pd~~ty 390 (874)
..-+ ..|+ ....++..+...| ..+++++...++.... +-|...|
T Consensus 173 ~~N~-sAW~------------------------------~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW 220 (320)
T PLN02789 173 VRNN-SAWN------------------------------QRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPW 220 (320)
T ss_pred CCch-hHHH------------------------------HHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHH
Confidence 3211 1110 0011111111112 2346677776666543 4477888
Q ss_pred HHHHHHHHhcC----ChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 002846 391 TAVGRMAMSMG----DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN 434 (874)
Q Consensus 391 n~LI~~~~~~G----~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k 434 (874)
+-+-..+...+ ...+|...+.+....+. .+......|++.||.
T Consensus 221 ~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~ 267 (320)
T PLN02789 221 RYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence 88888887733 34557777776554321 233444555666654
No 184
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=77.58 E-value=23 Score=42.39 Aligned_cols=85 Identities=16% Similarity=0.154 Sum_probs=52.5
Q ss_pred HHHHHHhcCChhHHHHHHH-----HH-HHCCCCC---CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 002846 393 VGRMAMSMGDGDMAFDMVK-----RM-KSLGINP---RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463 (874)
Q Consensus 393 LI~~~~~~G~~d~A~~l~~-----~M-~~~Gi~P---d~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~L 463 (874)
-..++..+|+.++|.++.- +| .+.+.+. +..+.-.+-..+-+...+-.|-++|..|-. ...+
T Consensus 709 AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksi 779 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSL 779 (1081)
T ss_pred HHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHH
Confidence 3455566777777766542 11 1222222 233333333344456677788889888754 2567
Q ss_pred HHHHHhcCCchHHHHHHHHHHhc
Q 002846 464 LRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 464 I~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
++.....+++++|+.+-++..+-
T Consensus 780 VqlHve~~~W~eAFalAe~hPe~ 802 (1081)
T KOG1538|consen 780 VQLHVETQRWDEAFALAEKHPEF 802 (1081)
T ss_pred hhheeecccchHhHhhhhhCccc
Confidence 78888899999999998876653
No 185
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.43 E-value=43 Score=36.05 Aligned_cols=122 Identities=10% Similarity=0.059 Sum_probs=85.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhC
Q 002846 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNE---ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (874)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~---~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~ 435 (874)
+=+....|+.+.|...++.+..+- |.. .-..+| .+-..|+.++|.++++.+.+.. +-|.++|--=|...-..
T Consensus 59 ~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam--~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 59 FIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAM--LLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHH--HHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHc
Confidence 334456788888888888887763 332 222222 2345778889999998888765 45666676555555556
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 436 G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
|.--+|.+-+.+..+. +..|...|.-|-..|...|++++|.-.+++|.-.
T Consensus 134 GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred CCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 6666776666555542 5678888999999999999999999999888765
No 186
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=77.22 E-value=20 Score=38.90 Aligned_cols=92 Identities=12% Similarity=0.143 Sum_probs=69.1
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-cccHHH---
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE----ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGP--- 427 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~----~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd-~~tYn~--- 427 (874)
...+.-+.+.|++++|...|+.+...- |+. ..+--|-..|...|++++|...|+.+.+. .|+ ......
T Consensus 147 ~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl~k 222 (263)
T PRK10803 147 NAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHHHH
Confidence 444554566799999999999999763 432 46677888999999999999999999865 233 222222
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHc
Q 002846 428 ALSVFCNNGDVDKACSVEEHMLEH 451 (874)
Q Consensus 428 LI~a~~k~G~~~~A~~l~~eM~~~ 451 (874)
+...+-..|+.++|..+|+...+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344566889999999999988774
No 187
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=76.47 E-value=30 Score=40.22 Aligned_cols=63 Identities=17% Similarity=0.157 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcc----cHHHHHHHHHhCCChhHHHHHHHHHHH
Q 002846 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR----SYGPALSVFCNNGDVDKACSVEEHMLE 450 (874)
Q Consensus 386 d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~----tYn~LI~a~~k~G~~~~A~~l~~eM~~ 450 (874)
+...++.+-.+|.+.|++++|...|++-.+. .|+.. +|..+-.+|...|+.++|.+.++...+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4556666666666667777777766665443 45533 355566666666777776666666655
No 188
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=76.17 E-value=50 Score=32.53 Aligned_cols=103 Identities=7% Similarity=0.038 Sum_probs=78.6
Q ss_pred HHHHHHHCCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHHHCCC-----CCCcccHHHHHHHHHhCCC-hhHHHHHH
Q 002846 374 IYEKMCLDEVPMNEA--SLTAVGRMAMSMGDGDMAFDMVKRMKSLGI-----NPRLRSYGPALSVFCNNGD-VDKACSVE 445 (874)
Q Consensus 374 lf~~M~~~Gv~Pd~~--tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi-----~Pd~~tYn~LI~a~~k~G~-~~~A~~l~ 445 (874)
....|.+.+..++.. ..|+++.-.+..+++.....+++.+..... .-+-.+|.+++.+..+..- ---+..+|
T Consensus 24 ~~~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf 103 (145)
T PF13762_consen 24 HLPYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLF 103 (145)
T ss_pred HHHHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHH
Confidence 334566677777764 468899988999999999999888753211 2466789999999977766 44578899
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCchHH
Q 002846 446 EHMLEHGVYPEEPELEALLRVSVEAGKGDRV 476 (874)
Q Consensus 446 ~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A 476 (874)
.-|.+.+..++..-|..||.++.+.-..+..
T Consensus 104 ~~Lk~~~~~~t~~dy~~li~~~l~g~~~~~~ 134 (145)
T PF13762_consen 104 NFLKKNDIEFTPSDYSCLIKAALRGYFHDSL 134 (145)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCCCcch
Confidence 9999999999999999999998775444444
No 189
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=75.84 E-value=4.8 Score=34.32 Aligned_cols=60 Identities=17% Similarity=0.266 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHC----CC-CCC-cccHHHHHHHHHhCCChhHHHHHHHH
Q 002846 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GI-NPR-LRSYGPALSVFCNNGDVDKACSVEEH 447 (874)
Q Consensus 388 ~tyn~LI~~~~~~G~~d~A~~l~~~M~~~----Gi-~Pd-~~tYn~LI~a~~k~G~~~~A~~l~~e 447 (874)
.+|+.+-..|...|++++|...|++.... |- .|+ ..+|+.+=..|...|+.++|.+.+++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 35666666777777777777776655432 10 111 33444444455555555555555544
No 190
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=74.77 E-value=1.9e+02 Score=34.53 Aligned_cols=261 Identities=12% Similarity=0.030 Sum_probs=153.8
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 002846 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (874)
Q Consensus 159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (874)
..-...++.+.++++++..+. .+..+ -.+..=|..+...|+..+-+.+=..|++.- +-...+|=++=--|-
T Consensus 253 ~~y~~c~f~~c~kit~~lle~-----dpfh~--~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl- 323 (611)
T KOG1173|consen 253 RLYYGCRFKECLKITEELLEK-----DPFHL--PCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYL- 323 (611)
T ss_pred HHHHcChHHHHHHHhHHHHhh-----CCCCc--chHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHH-
Confidence 566778899999999998442 22333 456666778899999888887777887542 223344433322222
Q ss_pred cccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhh--hHhhhcCcccChhhhhcCChHHHHHHHHHHHHc--C
Q 002846 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQ--LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENL--G 314 (874)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vt--yn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~--G 314 (874)
-.|...+|...|.-. - .+.+.+. |=..=+. |+-.|.-|.|+..+..--+. |
T Consensus 324 ---------~i~k~seARry~SKa-----t-----~lD~~fgpaWl~fghs------fa~e~EhdQAmaaY~tAarl~~G 378 (611)
T KOG1173|consen 324 ---------MIGKYSEARRYFSKA-----T-----TLDPTFGPAWLAFGHS------FAGEGEHDQAMAAYFTAARLMPG 378 (611)
T ss_pred ---------HhcCcHHHHHHHHHH-----h-----hcCccccHHHHHHhHH------hhhcchHHHHHHHHHHHHHhccC
Confidence 236666787777411 1 1111111 3333233 44455555554444332221 1
Q ss_pred -CCCCeeeec----cccHHHHHHhhhcC---CC-CcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHC--CC
Q 002846 315 -QFSNGHMKL----NSQLLDGRSNLERG---PD-DQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD--EV 383 (874)
Q Consensus 315 -i~Pd~~ty~----~g~~~eA~~l~~~m---~p-d~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~--Gv 383 (874)
-.|-.+.=. .+.+.-|..+|.+- .| |.... +-+=-.....+.+.+|..+|..-... .+
T Consensus 379 ~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~-----------~Elgvvay~~~~y~~A~~~f~~~l~~ik~~ 447 (611)
T KOG1173|consen 379 CHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVL-----------HELGVVAYTYEEYPEALKYFQKALEVIKSV 447 (611)
T ss_pred CcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhh-----------hhhhheeehHhhhHHHHHHHHHHHHHhhhc
Confidence 112111100 23344444444443 22 22222 11111112456778888888765521 11
Q ss_pred C----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH
Q 002846 384 P----MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE 459 (874)
Q Consensus 384 ~----Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~t 459 (874)
. -=+.+++.|=.+|-+.+..++|+..+++-... ..-+..+|.++=-.|...|+++.|.+.|..-.. +.|+..+
T Consensus 448 ~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~ 524 (611)
T KOG1173|consen 448 LNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIF 524 (611)
T ss_pred cccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHH
Confidence 1 13456888888999999999999999987765 345778888888888899999999999988664 6699888
Q ss_pred HHHHHHHH
Q 002846 460 LEALLRVS 467 (874)
Q Consensus 460 y~~LI~~~ 467 (874)
-..|+..+
T Consensus 525 ~~~lL~~a 532 (611)
T KOG1173|consen 525 ISELLKLA 532 (611)
T ss_pred HHHHHHHH
Confidence 88887754
No 191
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=73.24 E-value=50 Score=36.23 Aligned_cols=138 Identities=9% Similarity=0.174 Sum_probs=102.1
Q ss_pred CHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHh-cC-ChhHHHHHHHHHHHC-CCCCCcccHHHHHHHHHhCCChhHHH
Q 002846 367 AFQRGFEIYEKMCL-DEVPMNEASLTAVGRMAMS-MG-DGDMAFDMVKRMKSL-GINPRLRSYGPALSVFCNNGDVDKAC 442 (874)
Q Consensus 367 ~~~~A~~lf~~M~~-~Gv~Pd~~tyn~LI~~~~~-~G-~~d~A~~l~~~M~~~-Gi~Pd~~tYn~LI~a~~k~G~~~~A~ 442 (874)
.+.+|+.+|+...- ..+.-|..+...|++.... .+ ....-.++.+.+... |-.++.-+-.++|..+++.+++.+-+
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 45578888874333 3466788888888888776 22 344445555655533 46678888889999999999999999
Q ss_pred HHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCchHHHHHHHH-----HHhcCCCCChhHHHHHHHHHhc
Q 002846 443 SVEEHMLEH-GVYPEEPELEALLRVSVEAGKGDRVYYLLHK-----LRTSVRKVSPSTADVIAKWFNS 504 (874)
Q Consensus 443 ~l~~eM~~~-Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~-----M~~~~~~~sp~T~~~I~~~~~s 504 (874)
++++.-... +-.-|..-|..+|+.....|+..-...+..+ +++.+..++|+....|..+|+.
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKK 290 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHh
Confidence 999987765 6667899999999999999998777776654 4555556677777777777754
No 192
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=72.04 E-value=59 Score=38.91 Aligned_cols=71 Identities=18% Similarity=0.161 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHH
Q 002846 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460 (874)
Q Consensus 386 d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty 460 (874)
+...|.++.-.+...|++++|...+++....+ |+...|..+-..+...|+.++|.+.+++.... .|...||
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~pt~ 489 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGENTL 489 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCchH
Confidence 44566666555666788888888888777654 66777777777777788888888877776553 3555554
No 193
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=71.70 E-value=8.7 Score=38.67 Aligned_cols=110 Identities=15% Similarity=0.119 Sum_probs=54.4
Q ss_pred hhhhhhhhhccccC------CCChh----hHHHHHHHHHHhCCCCCceEEEeccccccCCCCCChhhHHHHHHHHhcCce
Q 002846 607 AVVDAANVGLYSQR------NFKPA----RVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADAL 676 (874)
Q Consensus 607 iVIDGaNv~~~~~~------~f~~~----~l~~vv~~l~~~~~~~~~~lvvl~~~~~~~~~~~~~~~~~~~~~~~~~~~l 676 (874)
+||||+||-+.-.. ..++. +|...+..+.+ ..+...+||-.-.+..+... .. .....-. +
T Consensus 1 LlIDGYNli~~~~~l~~~~~~~~l~~aR~~Li~~L~~y~~--~~~~~v~VVFDa~~~~~~~~-~~------~~~~gi~-V 70 (166)
T PF05991_consen 1 LLIDGYNLIHAWPELRSLAERGDLEAARERLIEMLSEYAQ--FSGYEVIVVFDAYKVPGGSE-ER------EEYGGIE-V 70 (166)
T ss_pred CeEcchhhhCCCHHHHhhcCcCCHHHHHHHHHHHHHHHhc--ccCCEEEEEEeCCcCCCCCc-ee------eeeCceE-E
Confidence 58999999854221 12232 22222222222 23456666665444332111 10 0111223 4
Q ss_pred EecCCCCCccHHHHHHHHh-----cCceEEeCccc-ccccc----cccCCchHHhHhhcC
Q 002846 677 YATPTGSNDDWYWLYAAIK-----FKCLLVTNDEM-RDHTF----QLLGNDFFPRWKERH 726 (874)
Q Consensus 677 ~~tp~~s~DD~y~LyAa~~-----~~~~~vsnD~m-RdH~~----~ll~~~~F~rW~~~h 726 (874)
++|+.+..-|-|+.-.+-. .++.|||.|.+ +.+.+ .-++.+.|.+|....
T Consensus 71 vft~~~~tAD~~Ie~~v~~~~~~~~~v~VVTSD~~iq~~~~~~GA~~iss~ef~~~l~~~ 130 (166)
T PF05991_consen 71 VFTKEGETADDYIERLVRELKNRPRQVTVVTSDREIQRAARGRGAKRISSEEFLRELKAA 130 (166)
T ss_pred EECCCCCCHHHHHHHHHHHhccCCCeEEEEeCCHHHHHHHhhCCCEEEcHHHHHHHHHHH
Confidence 4577765555555544333 36899999975 44444 224445676666543
No 194
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=71.53 E-value=12 Score=30.83 Aligned_cols=60 Identities=17% Similarity=0.207 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCC-ChhHHHHHHHHH
Q 002846 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG-DVDKACSVEEHM 448 (874)
Q Consensus 388 ~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G-~~~~A~~l~~eM 448 (874)
.+|..+-..+...|++++|+..|++..+.. +-+...|..+=.+|.+.| +.++|.+.++..
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 345555555555555555555555554431 112333333444444455 455555555443
No 195
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=71.44 E-value=84 Score=31.51 Aligned_cols=100 Identities=20% Similarity=0.255 Sum_probs=56.3
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCcccHHHHH-HHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHH
Q 002846 398 MSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL-SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRV 476 (874)
Q Consensus 398 ~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI-~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A 476 (874)
.+.++.+++..++..|.-. .|.......+- --+...|++.+|..+|+++.+.. |...--.+|+..|..... |..
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~-D~~ 95 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALG-DPS 95 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcC-ChH
Confidence 3566788888888777653 45543333211 11346788888888888877654 544444555555444333 322
Q ss_pred HHH-HHHHHhcCCCCChhHHHHHHHHHhc
Q 002846 477 YYL-LHKLRTSVRKVSPSTADVIAKWFNS 504 (874)
Q Consensus 477 ~~l-l~~M~~~~~~~sp~T~~~I~~~~~s 504 (874)
++. =+++.+. +..|++..++..+...
T Consensus 96 Wr~~A~evle~--~~d~~a~~Lv~~Ll~~ 122 (160)
T PF09613_consen 96 WRRYADEVLES--GADPDARALVRALLAR 122 (160)
T ss_pred HHHHHHHHHhc--CCChHHHHHHHHHHHh
Confidence 322 2345555 5566666666665554
No 196
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=71.40 E-value=31 Score=38.60 Aligned_cols=97 Identities=8% Similarity=0.023 Sum_probs=77.8
Q ss_pred cccHHHHHHhhhcC-CCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 002846 324 NSQLLDGRSNLERG-PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD 402 (874)
Q Consensus 324 ~g~~~eA~~l~~~m-~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~ 402 (874)
.|+...|..+..+. .||-.-| -+.|.+|+..+++++-..+-.. .- +.+-|--.+..|.+.|+
T Consensus 190 ~~~~k~A~kl~k~Fkv~dkrfw-----------~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 190 MGQEKQAEKLKKEFKVPDKRFW-----------WLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEACLKYGN 252 (319)
T ss_pred CCCHHHHHHHHHHcCCcHHHHH-----------HHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHHHHHCCC
Confidence 56677787777777 7888888 8999999999999877765432 22 34789999999999999
Q ss_pred hhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHH
Q 002846 403 GDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEH 447 (874)
Q Consensus 403 ~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~e 447 (874)
..+|..++.. .++..-+..|.++|++.+|.+.--+
T Consensus 253 ~~eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 253 KKEASKYIPK----------IPDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHHHh----------CChHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999988865 3457889999999999999776444
No 197
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=70.24 E-value=61 Score=32.40 Aligned_cols=92 Identities=9% Similarity=-0.057 Sum_probs=71.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHH-hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 002846 392 AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC-NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA 470 (874)
Q Consensus 392 ~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~-k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~ 470 (874)
++-..+...|++++|..+|+..... .|....|--=+.+++ ..|++++|...|........ -|...+-.+=.++...
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHc
Confidence 3455567899999999999988765 455555544444444 57999999999999887663 4566677777788899
Q ss_pred CCchHHHHHHHHHHhc
Q 002846 471 GKGDRVYYLLHKLRTS 486 (874)
Q Consensus 471 G~~d~A~~ll~~M~~~ 486 (874)
|+.+.|.+-|+.-...
T Consensus 117 G~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 117 DNVCYAIKALKAVVRI 132 (157)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999987775
No 198
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.87 E-value=14 Score=40.55 Aligned_cols=104 Identities=10% Similarity=0.045 Sum_probs=58.6
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH
Q 002846 381 DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL---GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE 457 (874)
Q Consensus 381 ~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~---Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~ 457 (874)
.|......+...++.......+++.+...+-.++.. -..|+...| ++.-+|-.-+.+++..++..=+..|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~--~~irlllky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH--TWIRLLLKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH--HHHHHHHccChHHHHHHHhCcchhccccch
Confidence 344455555566666555566666666666555432 122333333 222333444555666666666666777777
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 458 PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 458 ~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
.+++.||+.+.+.+++.+|..+.-.|...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 77777777777777666666666555443
No 199
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=69.82 E-value=56 Score=38.29 Aligned_cols=81 Identities=17% Similarity=0.301 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 002846 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465 (874)
Q Consensus 386 d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~ 465 (874)
+...|..|-+.+.+.|+++.|.+.|.+.. -|..|+--|.-.|+.++-.++.+.-..+|- +|..+.
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~ 410 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQ 410 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHH
Confidence 44455556666666666666655554432 234455555555555555555544444432 233333
Q ss_pred HHHhcCCchHHHHHHH
Q 002846 466 VSVEAGKGDRVYYLLH 481 (874)
Q Consensus 466 ~~~~~G~~d~A~~ll~ 481 (874)
++.-.|+.++-.++|.
T Consensus 411 ~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 411 AALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHT-HHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHH
Confidence 3334455555444443
No 200
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=68.99 E-value=3.6e+02 Score=35.19 Aligned_cols=155 Identities=17% Similarity=0.055 Sum_probs=93.9
Q ss_pred cCChHHHHHHHHHHHHcCCCCCeeeec----cccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHH
Q 002846 297 SYRFDDLDSTFNEKENLGQFSNGHMKL----NSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGF 372 (874)
Q Consensus 297 ~g~~e~A~~lf~eM~~~Gi~Pd~~ty~----~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~ 372 (874)
..+..+-+-+++++.. ..++..-|. .+++++|+.-+.++.+ ..| .-.++.--+.|.+.+|+
T Consensus 864 qkDPkEyLP~L~el~~--m~~~~rkF~ID~~L~ry~~AL~hLs~~~~--~~~-----------~e~~n~I~kh~Ly~~aL 928 (1265)
T KOG1920|consen 864 QKDPKEYLPFLNELKK--METLLRKFKIDDYLKRYEDALSHLSECGE--TYF-----------PECKNYIKKHGLYDEAL 928 (1265)
T ss_pred ccChHHHHHHHHHHhh--chhhhhheeHHHHHHHHHHHHHHHHHcCc--ccc-----------HHHHHHHHhcccchhhh
Confidence 3445555555665552 223333333 5667777766666531 112 44444455666677776
Q ss_pred HHHHHHHHCCCCCCHHHH----HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHH
Q 002846 373 EIYEKMCLDEVPMNEASL----TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (874)
Q Consensus 373 ~lf~~M~~~Gv~Pd~~ty----n~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM 448 (874)
.++ .|+...| .+..+-+...+.+++|--+|+..-+. .-.|.+|-.+|++++|+.+...|
T Consensus 929 ~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql 991 (1265)
T KOG1920|consen 929 ALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQL 991 (1265)
T ss_pred hee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhh
Confidence 665 3455444 44445555678888888777654221 34788888899999999888877
Q ss_pred HHcCCCCCHHH--HHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 449 LEHGVYPEEPE--LEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 449 ~~~Gv~Pd~~t--y~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
... -|... -..|+.-+...++.-+|.+++.+-..+
T Consensus 992 ~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd 1028 (1265)
T KOG1920|consen 992 SEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD 1028 (1265)
T ss_pred cCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC
Confidence 531 12222 156777777888888888888776554
No 201
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=68.18 E-value=1e+02 Score=33.92 Aligned_cols=101 Identities=8% Similarity=0.105 Sum_probs=76.3
Q ss_pred CHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCcccHHHHHHHHHhCCChhHHHHH
Q 002846 367 AFQRGFEIYEKMCLD-EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL-GINPRLRSYGPALSVFCNNGDVDKACSV 444 (874)
Q Consensus 367 ~~~~A~~lf~~M~~~-Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~-Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l 444 (874)
.+..-.|+.+.+... |..++..+..++|..++..+++..-+++++..... +..-|.+.|...|......|+..-...+
T Consensus 181 ~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ki 260 (292)
T PF13929_consen 181 KLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKI 260 (292)
T ss_pred chhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHH
Confidence 444556666766654 56889999999999999999999999999987655 5667899999999999999999776666
Q ss_pred HHH-----HHHcCCCCCHHHHHHHHHHH
Q 002846 445 EEH-----MLEHGVYPEEPELEALLRVS 467 (874)
Q Consensus 445 ~~e-----M~~~Gv~Pd~~ty~~LI~~~ 467 (874)
.++ +...|+..+...-..|-..+
T Consensus 261 I~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 261 IDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred hhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 654 23445666655555554443
No 202
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=67.50 E-value=48 Score=40.47 Aligned_cols=197 Identities=13% Similarity=0.056 Sum_probs=141.3
Q ss_pred CCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeec----
Q 002846 248 KSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL---- 323 (874)
Q Consensus 248 k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~---- 323 (874)
+.|-+..|..+|.- ...|.-+|-+ |+..|+..+|..+...-.+ -.||..-|.
T Consensus 410 slGitksAl~I~Er----------------lemw~~vi~C------Y~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 410 SLGITKSALVIFER----------------LEMWDPVILC------YLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred HcchHHHHHHHHHh----------------HHHHHHHHHH------HHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 67888888888851 2346667777 9999999999998887777 357777775
Q ss_pred ----cccHHHHHHhhhcC-CCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 002846 324 ----NSQLLDGRSNLERG-PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAM 398 (874)
Q Consensus 324 ----~g~~~eA~~l~~~m-~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~ 398 (874)
..-.++|.++++.. ..--..+ +- -..+.++++++.+.|+.-..-. +.-..||=.+=-++.
T Consensus 466 v~~d~s~yEkawElsn~~sarA~r~~-----------~~---~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~AL 530 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISARAQRSL-----------AL---LILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAAL 530 (777)
T ss_pred hccChHHHHHHHHHhhhhhHHHHHhh-----------cc---ccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHH
Confidence 33455666665442 0000000 00 0123578888988887544332 223456666656666
Q ss_pred hcCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHH
Q 002846 399 SMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVY 477 (874)
Q Consensus 399 ~~G~~d~A~~l~~~M~~~Gi~Pd-~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~ 477 (874)
+.+++..|.+.|..... ..|| ...||.+=.+|.+.|+-.+|+..+.+..+.. .-+...|.--+....+.|.+++|+
T Consensus 531 qlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~ 607 (777)
T KOG1128|consen 531 QLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAI 607 (777)
T ss_pred HHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHH
Confidence 88999999999988765 3565 6789999999999999999999999999887 556667777777889999999999
Q ss_pred HHHHHHHhc
Q 002846 478 YLLHKLRTS 486 (874)
Q Consensus 478 ~ll~~M~~~ 486 (874)
+..++|...
T Consensus 608 ~A~~rll~~ 616 (777)
T KOG1128|consen 608 KAYHRLLDL 616 (777)
T ss_pred HHHHHHHHh
Confidence 999887654
No 203
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=66.62 E-value=1.7e+02 Score=30.41 Aligned_cols=120 Identities=13% Similarity=0.085 Sum_probs=83.2
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHH---HHHHHH
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG---PALSVF 432 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn---~LI~a~ 432 (874)
--|-.++...|+..+|...|++-..--+.-|....-.+.++....+++.+|...++.+-+.. |+-++=. .+-..|
T Consensus 93 ~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~~Ll~aR~l 170 (251)
T COG4700 93 YRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDGHLLFARTL 170 (251)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCchHHHHHHH
Confidence 45667788889999999999987765556688888888999999999999999998887663 4333222 233566
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHH
Q 002846 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL 479 (874)
Q Consensus 433 ~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~l 479 (874)
...|...+|..-|+..... .|+..--..--..+.+.|+.++|..-
T Consensus 171 aa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq 215 (251)
T COG4700 171 AAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQ 215 (251)
T ss_pred HhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHH
Confidence 7778888888888887764 34443322222344666766655433
No 204
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=66.54 E-value=2.4e+02 Score=33.77 Aligned_cols=113 Identities=12% Similarity=0.103 Sum_probs=86.9
Q ss_pred CHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CcccHHHHHHHHHhCCChhHHHHH
Q 002846 367 AFQRGFEIYEKMCL-DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSV 444 (874)
Q Consensus 367 ~~~~A~~lf~~M~~-~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~P-d~~tYn~LI~a~~k~G~~~~A~~l 444 (874)
.+....++|-++.. .+-.+|.-+++.|=-.|--.|+++.|.+.|+..... .| |...||-|=..++...+.++|..-
T Consensus 409 ~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsA 486 (579)
T KOG1125|consen 409 HLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISA 486 (579)
T ss_pred HHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHH
Confidence 34566777776665 454577777888888888999999999999988765 45 577899999999999999999999
Q ss_pred HHHHHHcCCCCCH--HHHHHHHHHHHhcCCchHHHHHHHHHH
Q 002846 445 EEHMLEHGVYPEE--PELEALLRVSVEAGKGDRVYYLLHKLR 484 (874)
Q Consensus 445 ~~eM~~~Gv~Pd~--~ty~~LI~~~~~~G~~d~A~~ll~~M~ 484 (874)
|.+.++ +.|+- +-||.=| .|...|.+++|...|-+..
T Consensus 487 Y~rALq--LqP~yVR~RyNlgI-S~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 487 YNRALQ--LQPGYVRVRYNLGI-SCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHh--cCCCeeeeehhhhh-hhhhhhhHHHHHHHHHHHH
Confidence 999887 45653 3455444 5778899999988886543
No 205
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=66.21 E-value=41 Score=36.80 Aligned_cols=58 Identities=16% Similarity=0.206 Sum_probs=29.5
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 002846 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (874)
Q Consensus 427 ~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~ 485 (874)
.++..+..+|+++.+.+.++++.... .-+...|..||.+|.+.|+...|...++.|.+
T Consensus 158 ~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 158 KLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 34444455555555555555554432 22455555555555555555555555555433
No 206
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=65.62 E-value=65 Score=31.40 Aligned_cols=61 Identities=18% Similarity=0.207 Sum_probs=25.8
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG 417 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~G 417 (874)
...++.+.+.|+-+.-.++..++...+ .++....-.+..+|.+.|+..+|.+++.+.-+.|
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 344444445555444444444444321 3344444445555555555555555555444444
No 207
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=65.05 E-value=2.3e+02 Score=31.48 Aligned_cols=31 Identities=13% Similarity=0.039 Sum_probs=24.0
Q ss_pred cccccccccccchhhhhhhhccCCCCCCCcc
Q 002846 106 KDGKRLTKDNNSRKNFAFLKSREMSSGNSSL 136 (874)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 136 (874)
-+++.+...||....|+.+-.|++...-...
T Consensus 55 ssg~~l~~~rYgd~~fdil~~gg~~~pg~~~ 85 (412)
T KOG2297|consen 55 SSGNDLDYRRYGDILFDILFAGGRLQPGGVK 85 (412)
T ss_pred hccccccHHHHHHHHHHHHHHhcccCCCCcc
Confidence 3456788889999999999999887654443
No 208
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=64.94 E-value=41 Score=32.16 Aligned_cols=88 Identities=8% Similarity=0.007 Sum_probs=65.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 002846 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE 469 (874)
Q Consensus 390 yn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~ 469 (874)
...+|..+...+.+..+...++.+...+. .+...+|.+|..|++... .+..+.+.. ..+......+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 45678888888899999999999988874 677789999999998753 344444442 1344445668888888
Q ss_pred cCCchHHHHHHHHHHh
Q 002846 470 AGKGDRVYYLLHKLRT 485 (874)
Q Consensus 470 ~G~~d~A~~ll~~M~~ 485 (874)
.+.++++..++.++..
T Consensus 82 ~~l~~~~~~l~~k~~~ 97 (140)
T smart00299 82 AKLYEEAVELYKKDGN 97 (140)
T ss_pred cCcHHHHHHHHHhhcC
Confidence 8888888888887744
No 209
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=64.30 E-value=12 Score=31.76 Aligned_cols=63 Identities=21% Similarity=0.230 Sum_probs=47.7
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHc----CC-CCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 002846 423 RSYGPALSVFCNNGDVDKACSVEEHMLEH----GV-YPE-EPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (874)
Q Consensus 423 ~tYn~LI~a~~k~G~~~~A~~l~~eM~~~----Gv-~Pd-~~ty~~LI~~~~~~G~~d~A~~ll~~M~~ 485 (874)
.+|+.+=..|...|++++|...|++..+. |- .|+ ..++..|-..+...|+.++|..++++-.+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45777888899999999999999887643 21 122 55677777888999999999999987543
No 210
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=64.11 E-value=1.5e+02 Score=34.98 Aligned_cols=117 Identities=15% Similarity=0.072 Sum_probs=69.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCChhHHHHHHHHHHHCC--C--CCCcccHHHHHHHHHhCCChh
Q 002846 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVG-RMAMSMGDGDMAFDMVKRMKSLG--I--NPRLRSYGPALSVFCNNGDVD 439 (874)
Q Consensus 365 ~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI-~~~~~~G~~d~A~~l~~~M~~~G--i--~Pd~~tYn~LI~a~~k~G~~~ 439 (874)
...++.|.++++.|..+ -|+...|...- +.+...|++++|.+.|++..... . -.....|. +.-.++-..+++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~E-l~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFE-LAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHH-HHHHHHHHchHH
Confidence 34667777777777765 36655554333 34455778888888877544210 0 01222232 444466678899
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCCc-------hHHHHHHHHHHh
Q 002846 440 KACSVEEHMLEHGVYPEEPELEALLRVS-VEAGKG-------DRVYYLLHKLRT 485 (874)
Q Consensus 440 ~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~-~~~G~~-------d~A~~ll~~M~~ 485 (874)
+|.+.|..+.+.. .-...+|..+..+| ...|+. ++|..+|.+...
T Consensus 323 ~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 323 EAAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 9999999888753 12344555444443 345666 788888877654
No 211
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=63.83 E-value=2.8e+02 Score=32.10 Aligned_cols=274 Identities=9% Similarity=-0.002 Sum_probs=157.6
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHH
Q 002846 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ----YHYNVLLYLC 236 (874)
Q Consensus 161 ~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~----~tyn~LL~a~ 236 (874)
+-.++...|...|-.... +..++-|+.....+-..+...|+.++|+..|+..... .|+. ..|..||.
T Consensus 207 ~~~~~hs~a~~t~l~le~-----~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~-- 277 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHD-----NTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLG-- 277 (564)
T ss_pred HHhcccchhhhHHHHHHh-----hccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHH--
Confidence 334555555555554422 2235556788899999999999999999999997643 2322 23444443
Q ss_pred HhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCC
Q 002846 237 SSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQF 316 (874)
Q Consensus 237 ~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~ 316 (874)
..|+.++...+..-+-+.+..-.. . |-.-..- +-...+++.|+.+-+.-.+. .
T Consensus 278 -----------~eg~~e~~~~L~~~Lf~~~~~ta~-----~---wfV~~~~------l~~~K~~~rAL~~~eK~I~~--~ 330 (564)
T KOG1174|consen 278 -----------QEGGCEQDSALMDYLFAKVKYTAS-----H---WFVHAQL------LYDEKKFERALNFVEKCIDS--E 330 (564)
T ss_pred -----------hccCHhhHHHHHHHHHhhhhcchh-----h---hhhhhhh------hhhhhhHHHHHHHHHHHhcc--C
Confidence 333333333322100000000000 1 1100011 22334555555554443332 1
Q ss_pred CCee-eec--------cccHHHHHHhhhcC---CC-CcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 002846 317 SNGH-MKL--------NSQLLDGRSNLERG---PD-DQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEV 383 (874)
Q Consensus 317 Pd~~-ty~--------~g~~~eA~~l~~~m---~p-d~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv 383 (874)
|+.+ .|- .++..+|.--|+.. .| +.-.| .-||+.|.-.|++.+|.-+-+.-... +
T Consensus 331 ~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y-----------~GL~hsYLA~~~~kEA~~~An~~~~~-~ 398 (564)
T KOG1174|consen 331 PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIY-----------RGLFHSYLAQKRFKEANALANWTIRL-F 398 (564)
T ss_pred cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHH-----------HHHHHHHHhhchHHHHHHHHHHHHHH-h
Confidence 1111 111 45666666666654 33 45667 88999999999999998766543321 1
Q ss_pred CCCHHHHHHH-HHHHHh-cCChhHHHHHHHHHHHCCCCCCcccH-HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHH
Q 002846 384 PMNEASLTAV-GRMAMS-MGDGDMAFDMVKRMKSLGINPRLRSY-GPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460 (874)
Q Consensus 384 ~Pd~~tyn~L-I~~~~~-~G~~d~A~~l~~~M~~~Gi~Pd~~tY-n~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty 460 (874)
.-+..+.+.+ ...|.- ..--++|..+++.-. .+.|+-.-- +.+-.-+...|..+++..+++.-.. ..||....
T Consensus 399 ~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L--~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH 474 (564)
T KOG1174|consen 399 QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL--KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLH 474 (564)
T ss_pred hcchhhhhhhcceeeccCchhHHHHHHHHHhhh--ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHH
Confidence 2234444433 122322 223567888877543 346764333 3333445578999999999987765 45999999
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 461 EALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 461 ~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
+.|-+.+.....+.+|++.|..-...
T Consensus 475 ~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 475 NHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 99999999999999999999877654
No 212
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=63.39 E-value=59 Score=37.91 Aligned_cols=59 Identities=12% Similarity=-0.101 Sum_probs=50.7
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE----ASLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~----~tyn~LI~~~~~~G~~d~A~~l~~~M~~~ 416 (874)
+.+-..|.+.|++++|+..|++-.+. .|+. .+|..+..+|.+.|+.++|.+.+++..+.
T Consensus 79 ~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 79 VNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66667888999999999999997765 4653 46999999999999999999999998775
No 213
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=62.48 E-value=19 Score=29.65 Aligned_cols=59 Identities=17% Similarity=0.158 Sum_probs=48.5
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHH
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG-DGDMAFDMVKRMKS 415 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G-~~d~A~~l~~~M~~ 415 (874)
..+=..+.+.|++++|+..|++..+.. +-+...|..+-.++...| ++++|+..+++..+
T Consensus 7 ~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 7 YNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 444456778999999999999988864 336778899999999999 79999999987654
No 214
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=62.25 E-value=1.9e+02 Score=29.69 Aligned_cols=73 Identities=14% Similarity=0.019 Sum_probs=46.5
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHH
Q 002846 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREG-IKLGQYHYNVLLYLCS 237 (874)
Q Consensus 160 ~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~G-i~pd~~tyn~LL~a~~ 237 (874)
.-..++..+|.+.|+.+...- |.....|+ ..-.+..++-+.|+++.|...|+++.+.- -.| ..-+...+.+.+
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~--P~s~~a~~--A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~-~~~~A~Y~~g~~ 88 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRY--PNSPYAPQ--AQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP-KADYALYMLGLS 88 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH---TTSTTHHH--HHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T-THHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC--CCChHHHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc-chhhHHHHHHHH
Confidence 446789999999999997642 33323333 44567788999999999999999988532 222 233444444444
No 215
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=62.22 E-value=3.2e+02 Score=33.93 Aligned_cols=81 Identities=7% Similarity=0.037 Sum_probs=59.5
Q ss_pred hhHHHHHHHHHHHCC-CCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHH
Q 002846 403 GDMAFDMVKRMKSLG-INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLH 481 (874)
Q Consensus 403 ~d~A~~l~~~M~~~G-i~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~ 481 (874)
..++.+.+++..+.+ -.|++.-|-++ -|+..++++.|.+...+..+-+-.-+...|.-|.-.+...+++.+|+.+.+
T Consensus 460 h~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd 537 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVD 537 (799)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 446777788776654 44544444333 356678899999999998887666788888888888888899999998887
Q ss_pred HHHh
Q 002846 482 KLRT 485 (874)
Q Consensus 482 ~M~~ 485 (874)
.-..
T Consensus 538 ~al~ 541 (799)
T KOG4162|consen 538 AALE 541 (799)
T ss_pred HHHH
Confidence 6544
No 216
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=62.10 E-value=61 Score=31.85 Aligned_cols=63 Identities=17% Similarity=0.083 Sum_probs=47.6
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCChh-HHHHHHHHHhcc
Q 002846 442 CSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS-TADVIAKWFNSK 505 (874)
Q Consensus 442 ~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~-T~~~I~~~~~s~ 505 (874)
.++...+.+.|++++..= ..+++.+...+..-.|.++++++++.+-.+++. .|++|.-+-+.|
T Consensus 6 ~~~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 6 EDAIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 345566778888887665 467788888888899999999999986677776 577777765554
No 217
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=61.91 E-value=1.3e+02 Score=30.38 Aligned_cols=102 Identities=12% Similarity=0.160 Sum_probs=74.7
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 002846 372 FEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (874)
Q Consensus 372 ~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~ 451 (874)
.+....+...|+.|+...|..+|+.+.+.|+... +..+...++-||...-...+-.+.. ....+.++=-+|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 5667777789999999999999999999998655 4455667888888777766655543 334455555555442
Q ss_pred CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 002846 452 GVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (874)
Q Consensus 452 Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M 483 (874)
=...+..+++.+...|++-+|.++....
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 0114677888889999999999998775
No 218
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=61.09 E-value=89 Score=30.72 Aligned_cols=75 Identities=12% Similarity=0.041 Sum_probs=52.8
Q ss_pred HhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCC
Q 002846 363 AKKYAFQRGFEIYEKMCLDE--VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (874)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~G--v~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~ 437 (874)
.+.|+.++|.+.|+.+..+- -.-...+---|+.+|.+.+++++|...+++..+..-.---+-|.-.+.|++.-..
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQ 97 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 46788889999998888752 1224456667888888999999999888888876433234567667777665443
No 219
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=60.52 E-value=42 Score=39.30 Aligned_cols=95 Identities=16% Similarity=0.048 Sum_probs=47.7
Q ss_pred cccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 002846 324 NSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDG 403 (874)
Q Consensus 324 ~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~ 403 (874)
.|+++.|..+..+.. +...| ..|=+...+.|+++-|.+.|.+..+ |..|+-.|...|+.
T Consensus 331 lg~L~~A~~~a~~~~-~~~~W-----------~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~ 389 (443)
T PF04053_consen 331 LGNLDIALEIAKELD-DPEKW-----------KQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDR 389 (443)
T ss_dssp CT-HHHHHHHCCCCS-THHHH-----------HHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-H
T ss_pred cCCHHHHHHHHHhcC-cHHHH-----------HHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCH
Confidence 455555555544431 23344 5555555556666666666555332 45555555666665
Q ss_pred hHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHH
Q 002846 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVE 445 (874)
Q Consensus 404 d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~ 445 (874)
+.-.++.+.....|- +|....++.-.|++++..+++
T Consensus 390 ~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 390 EKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp HHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHH
Confidence 555555555444432 455555555556655555444
No 220
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=59.37 E-value=2e+02 Score=29.02 Aligned_cols=114 Identities=13% Similarity=0.163 Sum_probs=75.8
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG--DGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G--~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~ 433 (874)
..+|+.+.+.|+. ..+..+...++-+|.......+-.+.... -...|.+++.++.. .|..++..+.
T Consensus 33 ~lli~lLi~~~~~----~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~--------~~~~iievLL 100 (167)
T PF07035_consen 33 ELLIDLLIRNGQF----SQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGT--------AYEEIIEVLL 100 (167)
T ss_pred HHHHHHHHHcCCH----HHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhh--------hHHHHHHHHH
Confidence 9999999999984 45566677788888887776664444322 14455666665542 3577888999
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 002846 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (874)
Q Consensus 434 k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~ 485 (874)
..|++-+|.++...... -+......++.+..+.++...-+.+++-...
T Consensus 101 ~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 101 SKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999877532 1222235567777777765555555554444
No 221
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=59.08 E-value=35 Score=32.22 Aligned_cols=72 Identities=14% Similarity=0.171 Sum_probs=50.9
Q ss_pred CCCceEEEecccccc---CCCCCChhhHHHHHHHHhcCceEecCCCCCccHHH--HHHHHhcCceEEeCcccccccc
Q 002846 640 SKKWPLIVLHNRRIT---GHKMDQPVNRALIEKWKNADALYATPTGSNDDWYW--LYAAIKFKCLLVTNDEMRDHTF 711 (874)
Q Consensus 640 ~~~~~lvvl~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~tp~~s~DD~y~--LyAa~~~~~~~vsnD~mRdH~~ 711 (874)
.|++++|+||.-... .+.-..-++...++++.+-+.+-+......-+|+- +-.|=..++.||||.++|--.+
T Consensus 22 rGHKT~vyLP~yY~~~~~~~~~~kvDd~~~F~~L~~l~lIkFi~~~~~~~~~~eV~~~Aek~~GI~VSs~E~~~~~~ 98 (122)
T PF14626_consen 22 RGHKTVVYLPKYYKNYVDDGGISKVDDLEAFQFLCDLDLIKFIEKRNRKKWFNEVLDEAEKTHGIFVSSSEYRRRNF 98 (122)
T ss_pred ccCeeEEEChHHHhcccccccccccchHHHHHHHHhcCceeeeccccHHHHHHHHHHHHHHcCcEEECCHHHhcccc
Confidence 589999999965543 22234667888899999999888776655555542 3333347899999999875554
No 222
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=59.00 E-value=67 Score=35.21 Aligned_cols=78 Identities=15% Similarity=0.199 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHH-----cCCCCCHHHHH
Q 002846 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE-----HGVYPEEPELE 461 (874)
Q Consensus 387 ~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~-----~Gv~Pd~~ty~ 461 (874)
..+++.++..+...|+.+.+...++++.... +-+...|-.+|.+|.+.|+...|...|+.|.. .|+.|-..+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 4688999999999999999999999998774 35788999999999999999999999988865 35555555444
Q ss_pred HHHH
Q 002846 462 ALLR 465 (874)
Q Consensus 462 ~LI~ 465 (874)
....
T Consensus 232 ~y~~ 235 (280)
T COG3629 232 LYEE 235 (280)
T ss_pred HHHH
Confidence 4433
No 223
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=58.73 E-value=2.5e+02 Score=29.92 Aligned_cols=57 Identities=14% Similarity=0.026 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH---HHHHHHhcccCCCcccCCCCHHHHHHHHh
Q 002846 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNV---LLYLCSSAAVGVVKPAKSGSGMRTLDTFE 260 (874)
Q Consensus 192 ~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~---LL~a~~~~~~~~~~~~k~G~~~~A~~vf~ 260 (874)
..|.... .+.+.|++++|++.|+.+...--.. ...-.+ +..++- +.++.++|...|+
T Consensus 34 ~~Y~~A~-~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy----------~~~~y~~A~~~~e 93 (243)
T PRK10866 34 EIYATAQ-QKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYY----------KNADLPLAQAAID 93 (243)
T ss_pred HHHHHHH-HHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHH----------hcCCHHHHHHHHH
Confidence 3444444 4567899999999999998643222 233222 223334 7899999999995
No 224
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=58.29 E-value=1e+02 Score=31.31 Aligned_cols=97 Identities=15% Similarity=0.073 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--cccHHHHHHHHHhCCChhHHHHHHHHHHHc---CCCCCH----H
Q 002846 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR--LRSYGPALSVFCNNGDVDKACSVEEHMLEH---GVYPEE----P 458 (874)
Q Consensus 388 ~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd--~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~---Gv~Pd~----~ 458 (874)
..+..+.+-|++.|+.+.|.+.+.++......|. +..+-.+|....-.+++..+.......... |-.++. .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3566677777777777777777777776543333 334455666666667777666665544322 211111 1
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 459 ELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 459 ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
.|..|.. ...+++.+|-.+|-.....
T Consensus 117 ~~~gL~~--l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 117 VYEGLAN--LAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHH--HHhchHHHHHHHHHccCcC
Confidence 2222221 3467888888888776554
No 225
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=57.81 E-value=4.7 Score=38.85 Aligned_cols=87 Identities=11% Similarity=0.053 Sum_probs=64.9
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhC
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~ 435 (874)
..+|+.+-+.+.+.....+++.+...+..-+....|.|+..|++.++.+...++++. .+..-...++..|-+.
T Consensus 11 ~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~ 83 (143)
T PF00637_consen 11 SEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKH 83 (143)
T ss_dssp CCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhc
Confidence 667888888889999999999999877677889999999999999888888888762 2223335577777777
Q ss_pred CChhHHHHHHHHHH
Q 002846 436 GDVDKACSVEEHML 449 (874)
Q Consensus 436 G~~~~A~~l~~eM~ 449 (874)
|.+++|.-++..+.
T Consensus 84 ~l~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 84 GLYEEAVYLYSKLG 97 (143)
T ss_dssp TSHHHHHHHHHCCT
T ss_pred chHHHHHHHHHHcc
Confidence 77777776666543
No 226
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=55.90 E-value=4.3e+02 Score=31.73 Aligned_cols=250 Identities=11% Similarity=0.006 Sum_probs=150.1
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 002846 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (874)
Q Consensus 159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (874)
.+.+.|.+.+|.-.|+.-+.+. +-++..|-.|=-..+.+++-..|+..+.+-.+ +.|+ -.-+|+..-+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-------P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~--LdP~--NleaLmaLAV- 361 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-------PQHAEAWQKLGITQAENENEQNAISALRRCLE--LDPT--NLEALMALAV- 361 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-------hHHHHHHHHhhhHhhhccchHHHHHHHHHHHh--cCCc--cHHHHHHHHH-
Confidence 3456677888888888774321 12346777776777777777788887777664 3343 2223332222
Q ss_pred cccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCccc-----ChhhhhcCChHHHHHHHHHHHHc
Q 002846 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMID-----KLESNSSYRFDDLDSTFNEKENL 313 (874)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~-----~~~~~~~g~~e~A~~lf~eM~~~ 313 (874)
+|...|.-..|+..|+ .-++ +...|-.+..+... ...+.....+....++|-++...
T Consensus 362 ------SytNeg~q~~Al~~L~------~Wi~------~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~ 423 (579)
T KOG1125|consen 362 ------SYTNEGLQNQALKMLD------KWIR------NKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQ 423 (579)
T ss_pred ------HHhhhhhHHHHHHHHH------HHHH------hCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHh
Confidence 3336666667877775 1111 11122222221000 00133444556667777776543
Q ss_pred -C--CCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 002846 314 -G--QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASL 390 (874)
Q Consensus 314 -G--i~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~ty 390 (874)
+ +.||+. ..|=--|--.|.+++|.+.|+...... +-|...|
T Consensus 424 ~~~~~DpdvQ-----------------------------------~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lW 467 (579)
T KOG1125|consen 424 LPTKIDPDVQ-----------------------------------SGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLW 467 (579)
T ss_pred CCCCCChhHH-----------------------------------hhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHH
Confidence 3 223322 222122345689999999999887653 3378899
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--cccHHHHHHHHHhCCChhHHHHHHHHH---HHc------CCCCCHHH
Q 002846 391 TAVGRMAMSMGDGDMAFDMVKRMKSLGINPR--LRSYGPALSVFCNNGDVDKACSVEEHM---LEH------GVYPEEPE 459 (874)
Q Consensus 391 n~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd--~~tYn~LI~a~~k~G~~~~A~~l~~eM---~~~------Gv~Pd~~t 459 (874)
|-|=..++...+-++|...+.+..+. +|. .+=|| |=-.|...|.+++|...|-+. ..+ +-.++...
T Consensus 468 NRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyN-lgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~i 544 (579)
T KOG1125|consen 468 NRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYN-LGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENI 544 (579)
T ss_pred HHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehh-hhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHH
Confidence 99999999999999999999988764 676 33466 555588999999998877553 332 12234456
Q ss_pred HHHHHHHHHhcCCchHHH
Q 002846 460 LEALLRVSVEAGKGDRVY 477 (874)
Q Consensus 460 y~~LI~~~~~~G~~d~A~ 477 (874)
|.+|=.++.-.++.|-+.
T Consensus 545 w~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 545 WQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred HHHHHHHHHHcCCchHHH
Confidence 777666666556555433
No 227
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=54.72 E-value=1.1e+02 Score=33.80 Aligned_cols=92 Identities=17% Similarity=0.265 Sum_probs=40.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhCCChhHHH
Q 002846 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKAC 442 (874)
Q Consensus 364 k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd-~~tYn~LI~a~~k~G~~~~A~ 442 (874)
+.+++++|+..|.+-..-. +-|.+-|..=..+|++.|..+.|++=-+.-... -|. ..+|..|=.+|...|++++|.
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHHHH
Confidence 3445555555555444321 123344444445555555555554443332221 122 334444444444455555555
Q ss_pred HHHHHHHHcCCCCCHHHH
Q 002846 443 SVEEHMLEHGVYPEEPEL 460 (874)
Q Consensus 443 ~l~~eM~~~Gv~Pd~~ty 460 (874)
+-|..-.+ +.|+-.+|
T Consensus 170 ~aykKaLe--ldP~Ne~~ 185 (304)
T KOG0553|consen 170 EAYKKALE--LDPDNESY 185 (304)
T ss_pred HHHHhhhc--cCCCcHHH
Confidence 44444333 33444444
No 228
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=53.71 E-value=3.1 Score=40.15 Aligned_cols=88 Identities=13% Similarity=0.111 Sum_probs=63.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 002846 392 AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAG 471 (874)
Q Consensus 392 ~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G 471 (874)
.+|..+.+.+.++.+..+++.+...+..-+....+.++..|++.++.++..++++. .+..-...+++.|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcc
Confidence 35677777888888888888888776656677888899999999888888887762 22233456777777888
Q ss_pred CchHHHHHHHHHHhc
Q 002846 472 KGDRVYYLLHKLRTS 486 (874)
Q Consensus 472 ~~d~A~~ll~~M~~~ 486 (874)
.+++|..++.++...
T Consensus 85 l~~~a~~Ly~~~~~~ 99 (143)
T PF00637_consen 85 LYEEAVYLYSKLGNH 99 (143)
T ss_dssp SHHHHHHHHHCCTTH
T ss_pred hHHHHHHHHHHcccH
Confidence 888888777765443
No 229
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=53.18 E-value=5.4e+02 Score=32.05 Aligned_cols=270 Identities=11% Similarity=0.004 Sum_probs=133.8
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhH
Q 002846 203 KRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLD 282 (874)
Q Consensus 203 k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn 282 (874)
+.+....++.-|......+...+..++..+..++.. +...|..++..-+. .....
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~-------f~~~~~~Ee~~Lll---------li~es--------- 293 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFAL-------FLPKSGQEEVILLL---------LIEES--------- 293 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccc-------cCCCCcHHHHHHHH---------HHHhh---------
Confidence 356778888888888888888888888887776662 33666666662211 11110
Q ss_pred hhhcCcccChhhhhcCChHHHHH----HHHHHHHcCCCCCeeee-----c---cccHHHHHHhhhcCCCC----cccccc
Q 002846 283 YGSSPMIDKLESNSSYRFDDLDS----TFNEKENLGQFSNGHMK-----L---NSQLLDGRSNLERGPDD----QSRKKD 346 (874)
Q Consensus 283 ~LI~~~~~~~~~~~~g~~e~A~~----lf~eM~~~Gi~Pd~~ty-----~---~g~~~eA~~l~~~m~pd----~~ty~~ 346 (874)
+.....++++.- ++.++....+.-|...| . +|+...+-+.|++..|- .-.|
T Consensus 294 -----------~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w-- 360 (799)
T KOG4162|consen 294 -----------LIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERW-- 360 (799)
T ss_pred -----------ccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHH--
Confidence 111111111111 11111111121111111 1 44444444444444221 1223
Q ss_pred cccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCChhHHHHHHHHHHH--CC----C
Q 002846 347 WSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVG-RMAM-SMGDGDMAFDMVKRMKS--LG----I 418 (874)
Q Consensus 347 w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI-~~~~-~~G~~d~A~~l~~~M~~--~G----i 418 (874)
+.+-..|.-+|.-..|..++++-...--.|+..+--.|+ +.|. +-+..+++++.-.+... .| +
T Consensus 361 ---------~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l 431 (799)
T KOG4162|consen 361 ---------YQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHL 431 (799)
T ss_pred ---------HHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhh
Confidence 555556666677667777776533322124333332333 3333 24556666655555444 11 2
Q ss_pred CCCcccHHHHHHHHHhC-----------CChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 419 NPRLRSYGPALSVFCNN-----------GDVDKACSVEEHMLEH-GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 419 ~Pd~~tYn~LI~a~~k~-----------G~~~~A~~l~~eM~~~-Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
.|. .|-.+=-+|... ....++.+.+++..+. +-.|++.-|-+|-. +-.++++.|.+...+..+-
T Consensus 432 ~~~--~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~--A~~R~l~sAl~~~~eaL~l 507 (799)
T KOG4162|consen 432 KPR--GYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQY--AEQRQLTSALDYAREALAL 507 (799)
T ss_pred hhh--HHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH--HHHHhHHHHHHHHHHHHHh
Confidence 232 222222222221 1124556666666554 33466666655543 4456888999999888887
Q ss_pred CCCCChhHHHHHHHHHhcchHHHhhhhhchhHHHHHHHhhcC
Q 002846 487 VRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKG 528 (874)
Q Consensus 487 ~~~~sp~T~~~I~~~~~s~~~~~a~~~~~d~~~v~ea~~~~G 528 (874)
+.+.++..|..+.-.+....-.+.+ ...|..++...|
T Consensus 508 ~~~~~~~~whLLALvlSa~kr~~~A-----l~vvd~al~E~~ 544 (799)
T KOG4162|consen 508 NRGDSAKAWHLLALVLSAQKRLKEA-----LDVVDAALEEFG 544 (799)
T ss_pred cCCccHHHHHHHHHHHhhhhhhHHH-----HHHHHHHHHHhh
Confidence 6676766666544444333222222 355667776544
No 230
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.14 E-value=62 Score=35.85 Aligned_cols=56 Identities=9% Similarity=-0.068 Sum_probs=42.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 002846 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (874)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~ 416 (874)
-++-..+.++++-++..=..-|+-||..|++.||+.+.+.+++.+|..+.-.|...
T Consensus 109 rlllky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 109 RLLLKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 34455677788888777777888888888888888888888888888777766544
No 231
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=52.65 E-value=2.6e+02 Score=28.13 Aligned_cols=85 Identities=14% Similarity=0.086 Sum_probs=60.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCC
Q 002846 361 EDAKKYAFQRGFEIYEKMCLDEVPMN---EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (874)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~Gv~Pd---~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~ 437 (874)
.-.+.++.+++..+++-|..- .|. ..++-.++ +...|++++|..+|+++... +...-|...+.++|-...
T Consensus 19 ~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~---~~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWL--HIVRGDWDDALRLLRELEER---APGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhcc---CCCChHHHHHHHHHHHHc
Confidence 334667999999999999864 344 34444443 56889999999999998765 344567778888887666
Q ss_pred hhHHHHHHHH-HHHcC
Q 002846 438 VDKACSVEEH-MLEHG 452 (874)
Q Consensus 438 ~~~A~~l~~e-M~~~G 452 (874)
-+..++.+.. +.+.+
T Consensus 92 ~D~~Wr~~A~evle~~ 107 (160)
T PF09613_consen 92 GDPSWRRYADEVLESG 107 (160)
T ss_pred CChHHHHHHHHHHhcC
Confidence 6666666643 55544
No 232
>PHA02875 ankyrin repeat protein; Provisional
Probab=52.34 E-value=2e+02 Score=32.92 Aligned_cols=110 Identities=15% Similarity=0.072 Sum_probs=52.5
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc---ccHHHHHH
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASL--TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL---RSYGPALS 430 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~ty--n~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~---~tYn~LI~ 430 (874)
.+.+...+..|.. ++++.+.+.|..|+.... .+.+...+..|+.+.+..++ +.|..++. .-++ .+.
T Consensus 103 ~tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll----~~g~~~~~~d~~g~T-pL~ 173 (413)
T PHA02875 103 MTPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLI----DHKACLDIEDCCGCT-PLI 173 (413)
T ss_pred CCHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----hcCCCCCCCCCCCCC-HHH
Confidence 3444445555654 444555556665543221 23445555667665444433 34443332 2223 344
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHhcCCchHHHH
Q 002846 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPEL---EALLRVSVEAGKGDRVYY 478 (874)
Q Consensus 431 a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty---~~LI~~~~~~G~~d~A~~ 478 (874)
..+..|+.+ +.+.+.+.|..|+...- .+++...+..|..+-+.-
T Consensus 174 ~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~ 220 (413)
T PHA02875 174 IAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRL 220 (413)
T ss_pred HHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHH
Confidence 445556643 34445556666654332 245554455666544333
No 233
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.33 E-value=39 Score=40.32 Aligned_cols=103 Identities=16% Similarity=0.200 Sum_probs=77.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChh
Q 002846 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (874)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~ 439 (874)
.-..+.|+++.|.+|-.+.. ++.-|..|-++..+.|++..|.+.|..-. -|..|+-.+...|+.+
T Consensus 645 elal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~---------d~~~LlLl~t~~g~~~ 709 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRAR---------DLGSLLLLYTSSGNAE 709 (794)
T ss_pred hhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhc---------chhhhhhhhhhcCChh
Confidence 34457788888888876643 67889999999999999999999987643 3577888888889887
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 002846 440 KACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (874)
Q Consensus 440 ~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M 483 (874)
....+-..-.+.|. .|.-.-+|...|++++..++|-+-
T Consensus 710 ~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 710 GLAVLASLAKKQGK------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 76666666666662 244444566789999988887653
No 234
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=52.01 E-value=2.7e+02 Score=30.79 Aligned_cols=140 Identities=10% Similarity=0.104 Sum_probs=88.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhH
Q 002846 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK 440 (874)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~ 440 (874)
.....|++.+|..+|+......-. +...--.|+++|...|+.+.|..++..+...--.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 455778999999999887765322 2455667899999999999999999987644211122222223444444444444
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCChh-HHHHHHHHHhc
Q 002846 441 ACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS-TADVIAKWFNS 504 (874)
Q Consensus 441 A~~l~~eM~~~Gv~P-d~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~-T~~~I~~~~~s 504 (874)
...+-...-. -| |...=-.|-..+...|+.+.|.+.|-.+..+.++...+ ....+...|..
T Consensus 222 ~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~ 284 (304)
T COG3118 222 IQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEA 284 (304)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHh
Confidence 4444444433 25 45555567777888999999998888877765565544 33345555443
No 235
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.00 E-value=1.4e+02 Score=32.44 Aligned_cols=102 Identities=14% Similarity=0.045 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHc-CCCCCH-HHHH
Q 002846 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLG----INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH-GVYPEE-PELE 461 (874)
Q Consensus 388 ~tyn~LI~~~~~~G~~d~A~~l~~~M~~~G----i~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~-Gv~Pd~-~ty~ 461 (874)
..|+.-++. .+.|++..|.+.|....+.. ..|+..- -|-..+...|+.++|-.+|..+.+. +-.|-. ..+-
T Consensus 143 ~~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~y--WLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdall 219 (262)
T COG1729 143 KLYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYY--WLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALL 219 (262)
T ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHH--HHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence 367776655 45677999999999888762 2233222 2778888999999999999888764 222322 4444
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhcCCCCChhH
Q 002846 462 ALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPST 494 (874)
Q Consensus 462 ~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~T 494 (874)
-|-....+.|+.++|...|.++.+. +|..+.
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k~--YP~t~a 250 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIKR--YPGTDA 250 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHH--CCCCHH
Confidence 5555667889999999999999998 776553
No 236
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=51.96 E-value=29 Score=25.17 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHH
Q 002846 389 SLTAVGRMAMSMGDGDMAFDMVKRM 413 (874)
Q Consensus 389 tyn~LI~~~~~~G~~d~A~~l~~~M 413 (874)
+|+.|-+.|.+.|++++|.+++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3566667777777777777777663
No 237
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=51.45 E-value=3.9e+02 Score=31.54 Aligned_cols=152 Identities=13% Similarity=0.047 Sum_probs=89.7
Q ss_pred CCCCHHHHHHHHhhcccCchhhhhcCCCC-c-----hhhhHhhhcCcccChhhhh----cCChHHHHHHHHHHHHcCCCC
Q 002846 248 KSGSGMRTLDTFEVSTMNSTELGDSRDMD-N-----NGQLDYGSSPMIDKLESNS----SYRFDDLDSTFNEKENLGQFS 317 (874)
Q Consensus 248 k~G~~~~A~~vf~v~~~~s~em~~~~gi~-d-----~vtyn~LI~~~~~~~~~~~----~g~~e~A~~lf~eM~~~Gi~P 317 (874)
=.|+-+.+++.+. +-.+..++. + ...|..++.. ++. ....+.|.+++.+|..+ -|
T Consensus 200 F~gdR~~GL~~L~-------~~~~~~~i~~~la~L~LL~y~~~~~~------~~~~~~~~~~~~~a~~lL~~~~~~--yP 264 (468)
T PF10300_consen 200 FSGDRELGLRLLW-------EASKSENIRSPLAALVLLWYHLVVPS------FLGIDGEDVPLEEAEELLEEMLKR--YP 264 (468)
T ss_pred cCCcHHHHHHHHH-------HHhccCCcchHHHHHHHHHHHHHHHH------HcCCcccCCCHHHHHHHHHHHHHh--CC
Confidence 4577777777774 222223454 2 2347776666 443 34678888888888776 34
Q ss_pred CeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHH-HHHHhcCCHHHHHHHHHHHHHCCC---CCCHHHHHHH
Q 002846 318 NGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRL-SEDAKKYAFQRGFEIYEKMCLDEV---PMNEASLTAV 393 (874)
Q Consensus 318 d~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI-~~~~k~g~~~~A~~lf~~M~~~Gv---~Pd~~tyn~L 393 (874)
+..-| ...- ..+...|++++|.+.|+....... +.....|=-+
T Consensus 265 ~s~lf---------------------------------l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El 311 (468)
T PF10300_consen 265 NSALF---------------------------------LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFEL 311 (468)
T ss_pred CcHHH---------------------------------HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHH
Confidence 33333 2222 234457899999999997553211 1122333334
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHH--hCCCh-------hHHHHHHHHHH
Q 002846 394 GRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC--NNGDV-------DKACSVEEHML 449 (874)
Q Consensus 394 I~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~--k~G~~-------~~A~~l~~eM~ 449 (874)
.-.++..+++++|.+.|..+.+..- -...+|. .+.|.| ..|+. ++|.++|.+..
T Consensus 312 ~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~-Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 312 AWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYA-YLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHchHHHHHHHHHHHHhccc-cHHHHHH-HHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 4557778999999999999987632 2233333 333333 46777 77777776654
No 238
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=51.25 E-value=2.5e+02 Score=27.56 Aligned_cols=118 Identities=15% Similarity=0.107 Sum_probs=63.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC---------------C--CCCCcccHHH
Q 002846 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL---------------G--INPRLRSYGP 427 (874)
Q Consensus 365 ~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~---------------G--i~Pd~~tYn~ 427 (874)
.|.++++.++..+..... +..-||-+|--...+-+-+..+++++.+-+. + ..-+..-...
T Consensus 15 dG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~se~vD~ 91 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKLSEYVDL 91 (161)
T ss_dssp TT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---HHHHH
T ss_pred hchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcchHHHHHH
Confidence 466788889988877643 3444444444333333444444444433211 0 0012233445
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 428 LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
.|+.+.+.|+-+.-.+++.++.. .-.++....-.+-.+|.+-|...++-+++.+.-++
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 66666677777777777777654 23466777777777888888888888887777666
No 239
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=50.79 E-value=4.4e+02 Score=30.26 Aligned_cols=32 Identities=13% Similarity=0.100 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 002846 187 DRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQRE 220 (874)
Q Consensus 187 ~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~ 220 (874)
.+|| +..+.|+ +|-...+++.-++|.+.|...
T Consensus 139 ls~d-iv~~lll-SyRdiqdydamI~Lve~l~~~ 170 (374)
T PF13281_consen 139 LSPD-IVINLLL-SYRDIQDYDAMIKLVETLEAL 170 (374)
T ss_pred cChh-HHHHHHH-HhhhhhhHHHHHHHHHHhhcc
Confidence 5566 3445555 488889999999999999854
No 240
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=50.70 E-value=1.3e+02 Score=29.48 Aligned_cols=76 Identities=9% Similarity=0.063 Sum_probs=54.5
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCC---cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 002846 396 MAMSMGDGDMAFDMVKRMKSLGINPR---LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472 (874)
Q Consensus 396 ~~~~~G~~d~A~~l~~~M~~~Gi~Pd---~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~ 472 (874)
...+.|++++|.+.|+.+..+ .... ...---|+.+|.+.|+.++|...++..++..=.--.+-|...+.|++.-..
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQ 97 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 446789999999999998876 2222 233445889999999999999999998875422223566677777665443
No 241
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=49.67 E-value=4.6e+02 Score=30.22 Aligned_cols=123 Identities=11% Similarity=-0.044 Sum_probs=69.1
Q ss_pred cCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hc
Q 002846 163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDM--CSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCS-SA 239 (874)
Q Consensus 163 ~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a--~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~-~~ 239 (874)
.|+...|+++-.+-.. - +.-|..-.-.|+.+ ---.|+.+.|.+-|+.|... +.|--.=|.++. .+
T Consensus 97 AGda~lARkmt~~~~~-l------lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-----PEtRllGLRgLyleA 164 (531)
T COG3898 97 AGDASLARKMTARASK-L------LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-----PETRLLGLRGLYLEA 164 (531)
T ss_pred cCchHHHHHHHHHHHh-h------hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-----hHHHHHhHHHHHHHH
Confidence 4555666665554410 0 11222333344433 23479999999999999742 333322233332 22
Q ss_pred ccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCch--hhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcC-CC
Q 002846 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNN--GQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG-QF 316 (874)
Q Consensus 240 ~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~--vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~G-i~ 316 (874)
. +.|.-+.|...-. .-- +..+. ..+.+++.. .|..|+++.|++|++.-+... +.
T Consensus 165 q-------r~GareaAr~yAe-------~Aa---~~Ap~l~WA~~AtLe~------r~~~gdWd~AlkLvd~~~~~~vie 221 (531)
T COG3898 165 Q-------RLGAREAARHYAE-------RAA---EKAPQLPWAARATLEA------RCAAGDWDGALKLVDAQRAAKVIE 221 (531)
T ss_pred H-------hcccHHHHHHHHH-------HHH---hhccCCchHHHHHHHH------HHhcCChHHHHHHHHHHHHHHhhc
Confidence 2 5566666665542 111 22222 346788888 999999999999999766543 44
Q ss_pred CCee
Q 002846 317 SNGH 320 (874)
Q Consensus 317 Pd~~ 320 (874)
+|+.
T Consensus 222 ~~~a 225 (531)
T COG3898 222 KDVA 225 (531)
T ss_pred hhhH
Confidence 5443
No 242
>PRK15331 chaperone protein SicA; Provisional
Probab=48.92 E-value=1.7e+02 Score=29.56 Aligned_cols=87 Identities=11% Similarity=-0.042 Sum_probs=55.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHH
Q 002846 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKA 441 (874)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A 441 (874)
+-..|++++|..+|.-+..-+. -|..-|..|-.++-..+++++|.+++...-..+. -|.+.+-.+=.+|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 4467888888888887776432 1333345566666667788888888876655432 2233333344566677888888
Q ss_pred HHHHHHHHH
Q 002846 442 CSVEEHMLE 450 (874)
Q Consensus 442 ~~l~~eM~~ 450 (874)
...|+...+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 887777665
No 243
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=46.57 E-value=4.6e+02 Score=29.26 Aligned_cols=72 Identities=14% Similarity=0.244 Sum_probs=41.8
Q ss_pred HHHhcCCHHHHHHHH-HHHHHCCCCCCH----HHHHHHHHHHHhcCChh-HHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 002846 361 EDAKKYAFQRGFEIY-EKMCLDEVPMNE----ASLTAVGRMAMSMGDGD-MAFDMVKRMKSLGINPRLRSYGPALSVFCN 434 (874)
Q Consensus 361 ~~~k~g~~~~A~~lf-~~M~~~Gv~Pd~----~tyn~LI~~~~~~G~~d-~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k 434 (874)
-..+...+++..... ++|++.++ |+. +.|++++++---+.+-+ -|.+.++. +.+|.+|+.++|.
T Consensus 264 q~s~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveWnKkeelva~qalrh---------lK~yaPLL~af~s 333 (412)
T KOG2297|consen 264 QVSEEDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEWNKKEELVAEQALRH---------LKQYAPLLAAFCS 333 (412)
T ss_pred HhccCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhhchHHHHHHHHHHHH---------HHhhhHHHHHHhc
Confidence 333444455555544 56777664 443 35777776644332211 23334433 3478999999999
Q ss_pred CCChhHHH
Q 002846 435 NGDVDKAC 442 (874)
Q Consensus 435 ~G~~~~A~ 442 (874)
.|+.+.++
T Consensus 334 ~g~sEL~L 341 (412)
T KOG2297|consen 334 QGQSELEL 341 (412)
T ss_pred CChHHHHH
Confidence 99887654
No 244
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=45.51 E-value=5.2e+02 Score=33.32 Aligned_cols=191 Identities=13% Similarity=0.144 Sum_probs=108.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCC
Q 002846 197 ELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD 276 (874)
Q Consensus 197 LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~ 276 (874)
.+-+|.+. +...|+..|-+..+..... ...|..|=.-|+ ..-++.+|..-|+ ...+- +-.
T Consensus 465 ~a~~~~rK-~~~~al~ali~alrld~~~-apaf~~LG~iYr----------d~~Dm~RA~kCf~-------KAFeL-Dat 524 (1238)
T KOG1127|consen 465 VALGCMRK-NSALALHALIRALRLDVSL-APAFAFLGQIYR----------DSDDMKRAKKCFD-------KAFEL-DAT 524 (1238)
T ss_pred HHHHHhhh-hHHHHHHHHHHHHhcccch-hHHHHHHHHHHH----------HHHHHHHHHHHHH-------HHhcC-Cch
Confidence 33444433 4777777777766543222 235666655566 3346667877774 21111 222
Q ss_pred chhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccc
Q 002846 277 NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADE 356 (874)
Q Consensus 277 d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n 356 (874)
+.-.+-++.+. |+....+++|..+.-.--+.. | ..+- . + .|-.
T Consensus 525 daeaaaa~adt------yae~~~we~a~~I~l~~~qka--~-a~~~----------k----------~-nW~~------- 567 (1238)
T KOG1127|consen 525 DAEAAAASADT------YAEESTWEEAFEICLRAAQKA--P-AFAC----------K----------E-NWVQ------- 567 (1238)
T ss_pred hhhhHHHHHHH------hhccccHHHHHHHHHHHhhhc--h-HHHH----------H----------h-hhhh-------
Confidence 56668888888 999999999998732221110 0 0000 0 0 0000
Q ss_pred hHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHH--HHHHh
Q 002846 357 IRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL--SVFCN 434 (874)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI--~a~~k 434 (874)
.=-.|.+.++...|..-|..-.+.. +-|...|..|..+|..+|+...|.++|.+.... .|+ .+|.-.- ..-|.
T Consensus 568 -rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~-s~y~~fk~A~~ecd 642 (1238)
T KOG1127|consen 568 -RGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL-SKYGRFKEAVMECD 642 (1238)
T ss_pred -ccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH-hHHHHHHHHHHHHH
Confidence 0012445666777777776655443 346778888888888888888888888765443 333 2333222 23466
Q ss_pred CCChhHHHHHHHHHH
Q 002846 435 NGDVDKACSVEEHML 449 (874)
Q Consensus 435 ~G~~~~A~~l~~eM~ 449 (874)
.|...+|...+....
T Consensus 643 ~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 643 NGKYKEALDALGLII 657 (1238)
T ss_pred hhhHHHHHHHHHHHH
Confidence 778888877776654
No 245
>PHA02875 ankyrin repeat protein; Provisional
Probab=45.40 E-value=5.1e+02 Score=29.48 Aligned_cols=207 Identities=11% Similarity=-0.047 Sum_probs=105.3
Q ss_pred HHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcccCCCccc
Q 002846 171 KVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQY---HYNVLLYLCSSAAVGVVKPA 247 (874)
Q Consensus 171 ~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~---tyn~LL~a~~~~~~~~~~~~ 247 (874)
++++.+.+.|..++... ....+.|+.+++.|+.+- .+.+.+.|..|+.. ..+.|..|+
T Consensus 16 ~iv~~Ll~~g~~~n~~~----~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~----------- 76 (413)
T PHA02875 16 DIARRLLDIGINPNFEI----YDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAV----------- 76 (413)
T ss_pred HHHHHHHHCCCCCCccC----CCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHH-----------
Confidence 33444444555444311 123456677778888754 44445567666533 233444444
Q ss_pred CCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccH
Q 002846 248 KSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQL 327 (874)
Q Consensus 248 k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~ 327 (874)
..|+.+.+..+++ .-.......+..-++.|. . .+..|.. ++++.+.+.|..|+....
T Consensus 77 ~~g~~~~v~~Ll~-------~~~~~~~~~~~~g~tpL~-~------A~~~~~~----~iv~~Ll~~gad~~~~~~----- 133 (413)
T PHA02875 77 EEGDVKAVEELLD-------LGKFADDVFYKDGMTPLH-L------ATILKKL----DIMKLLIARGADPDIPNT----- 133 (413)
T ss_pred HCCCHHHHHHHHH-------cCCcccccccCCCCCHHH-H------HHHhCCH----HHHHHHHhCCCCCCCCCC-----
Confidence 4577766666553 000000000111122222 2 3455554 344555667877665433
Q ss_pred HHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChh
Q 002846 328 LDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE---ASLTAVGRMAMSMGDGD 404 (874)
Q Consensus 328 ~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~---~tyn~LI~~~~~~G~~d 404 (874)
...+.+...+..|+.+-+..+ .+.|..++. .-++ .+...+..|+.+
T Consensus 134 --------------------------~g~tpLh~A~~~~~~~~v~~L----l~~g~~~~~~d~~g~T-pL~~A~~~g~~e 182 (413)
T PHA02875 134 --------------------------DKFSPLHLAVMMGDIKGIELL----IDHKACLDIEDCCGCT-PLIIAMAKGDIA 182 (413)
T ss_pred --------------------------CCCCHHHHHHHcCCHHHHHHH----HhcCCCCCCCCCCCCC-HHHHHHHcCCHH
Confidence 114556666777876544444 445544432 2223 344455667765
Q ss_pred HHHHHHHHHHHCCCCCCcccH---HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH
Q 002846 405 MAFDMVKRMKSLGINPRLRSY---GPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP 458 (874)
Q Consensus 405 ~A~~l~~~M~~~Gi~Pd~~tY---n~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ 458 (874)
+++.+.+.|..|+.... .+++...+..|+.+ +.+.+.+.|..++..
T Consensus 183 ----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~~ 231 (413)
T PHA02875 183 ----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNIM 231 (413)
T ss_pred ----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcchH
Confidence 44455667777765432 35666566777764 455566678777653
No 246
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=44.60 E-value=43 Score=24.22 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002846 193 QLRVELDMCSKRGDVMGAIRLYDKAQ 218 (874)
Q Consensus 193 tyn~LI~a~~k~G~~~~Al~lf~~M~ 218 (874)
+|+.|=..|.+.|++++|+.+|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778889999999999999999954
No 247
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=44.07 E-value=2e+02 Score=31.75 Aligned_cols=110 Identities=15% Similarity=0.107 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhCCChhHHHHHHHHH
Q 002846 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHM 448 (874)
Q Consensus 370 ~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd-~~tYn~LI~a~~k~G~~~~A~~l~~eM 448 (874)
+...+=++|+..| +-+.+.+++.+|.+.|.+-.+. .|. .+-|.-=-.+|++.|..+.|.+=-+.-
T Consensus 76 e~~~~AE~LK~eG------------N~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~A 141 (304)
T KOG0553|consen 76 EDKALAESLKNEG------------NKLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESA 141 (304)
T ss_pred hHHHHHHHHHHHH------------HHHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 4555666777766 3457889999999999988765 454 555556678999999999998876665
Q ss_pred HHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCChhHHHH
Q 002846 449 LEHGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV 497 (874)
Q Consensus 449 ~~~Gv~Pd-~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~T~~~ 497 (874)
+. +-|. ...|..|=.+|...|++++|.+.|.+-..- .|.-.+|..
T Consensus 142 l~--iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLel--dP~Ne~~K~ 187 (304)
T KOG0553|consen 142 LS--IDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL--DPDNESYKS 187 (304)
T ss_pred Hh--cChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc--CCCcHHHHH
Confidence 54 2243 357888888999999999999998887654 444447655
No 248
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=43.07 E-value=52 Score=23.75 Aligned_cols=28 Identities=11% Similarity=0.219 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 002846 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKS 415 (874)
Q Consensus 388 ~tyn~LI~~~~~~G~~d~A~~l~~~M~~ 415 (874)
.+++.|-..|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677777888888888888888776543
No 249
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=42.99 E-value=1.2e+02 Score=30.82 Aligned_cols=94 Identities=16% Similarity=0.053 Sum_probs=66.3
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCCcccHHHHHH
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN--EASLTAVGRMAMSMGDGDMAFDMVKRMKSL---GINPRLRSYGPALS 430 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd--~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~---Gi~Pd~~tYn~LI~ 430 (874)
..+-+-|++.|+.++|++.|.+|.+....+. ...+-.+|+.....+++..+...+.+.... |-.++...--.+..
T Consensus 40 ~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~ 119 (177)
T PF10602_consen 40 EDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYE 119 (177)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 5677889999999999999999998765554 446778899999999999998888766543 22222222112222
Q ss_pred HH--HhCCChhHHHHHHHHHH
Q 002846 431 VF--CNNGDVDKACSVEEHML 449 (874)
Q Consensus 431 a~--~k~G~~~~A~~l~~eM~ 449 (874)
|+ ...+++.+|-++|-+..
T Consensus 120 gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 120 GLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHhchHHHHHHHHHccC
Confidence 22 23678999888886654
No 250
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=42.75 E-value=95 Score=37.80 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=16.5
Q ss_pred hhhhhhccceeeEeeccCCCCc
Q 002846 7 VNTLQQQNQLFSLTLCKSSPPT 28 (874)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~ 28 (874)
.+||......|-|.||.|--.+
T Consensus 405 ~s~le~~~~~~~l~LCNSIGT~ 426 (1189)
T KOG2041|consen 405 YSTLENRSRVYFLQLCNSIGTS 426 (1189)
T ss_pred hhhhhcccceEEEeeecccCCc
Confidence 3677777788899999886543
No 251
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=42.31 E-value=3.6e+02 Score=26.86 Aligned_cols=50 Identities=22% Similarity=0.337 Sum_probs=32.0
Q ss_pred hcCChhHHHHHHHHHHHCCCCCC---cccHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 002846 399 SMGDGDMAFDMVKRMKSLGINPR---LRSYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (874)
Q Consensus 399 ~~G~~d~A~~l~~~M~~~Gi~Pd---~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~G 452 (874)
..++++++..++..|.-. .|+ ..+|-..| +...|++++|..+|.++.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL--RPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHh--CCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC
Confidence 367777777777777643 344 33444333 345677888888888777764
No 252
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=42.17 E-value=1e+02 Score=28.68 Aligned_cols=60 Identities=12% Similarity=0.036 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHH
Q 002846 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430 (874)
Q Consensus 370 ~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~ 430 (874)
+..+-++.+....+.|+..+..+.+++|-+..++..|.++|+-++.. +.+....|..+|.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 44555555666677888888888888888888888888888877644 3333336665554
No 253
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=41.67 E-value=49 Score=24.99 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 002846 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (874)
Q Consensus 389 tyn~LI~~~~~~G~~d~A~~l~~~M~~~ 416 (874)
++..+.+.|...|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566777777777777777777777664
No 254
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=40.33 E-value=5.1e+02 Score=28.06 Aligned_cols=122 Identities=10% Similarity=0.024 Sum_probs=80.1
Q ss_pred HhcCCHHHHHHHHHHHHHCC--CCCC------HHHHHHHHHHHHhcCChhHHHHHHHHHHHC--------CCCCC-----
Q 002846 363 AKKYAFQRGFEIYEKMCLDE--VPMN------EASLTAVGRMAMSMGDGDMAFDMVKRMKSL--------GINPR----- 421 (874)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~G--v~Pd------~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~--------Gi~Pd----- 421 (874)
.+.|+++.|..++.+....- ..|+ ...||.-...+.+..++++|...+++-.+. ...|+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46789999999998877632 3343 345666666666664777776666543222 22233
Q ss_pred cccHHHHHHHHHhCCCh---hHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 422 LRSYGPALSVFCNNGDV---DKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 422 ~~tYn~LI~a~~k~G~~---~~A~~l~~eM~~~Gv~Pd-~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
..+...++.+|...+.. ++|..+.+.+.... |+ ...|-.=|+.+.+.++.+.+.+.+.+|...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~--~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEY--GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 34556677788777754 45677777775543 33 344444566666689999999999999998
No 255
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=40.05 E-value=1.4e+02 Score=27.79 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHh
Q 002846 459 ELEALLRVSVEAGKGDRVYYLLHKLRT 485 (874)
Q Consensus 459 ty~~LI~~~~~~G~~d~A~~ll~~M~~ 485 (874)
-|..|+..|...|..++|.+++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 367888888888888888888888877
No 256
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.99 E-value=1e+02 Score=37.99 Aligned_cols=108 Identities=9% Similarity=0.079 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHH
Q 002846 368 FQRGFEIYEKMCLD-EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEE 446 (874)
Q Consensus 368 ~~~A~~lf~~M~~~-Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~ 446 (874)
..+-+.+++.+... |+.-.-.|.+--+.-+...|+-.+|.++-.+.+ .||-+-|--=|.+++..+++++-+++-+
T Consensus 664 ~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAk 739 (829)
T KOG2280|consen 664 QMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAK 739 (829)
T ss_pred HHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHh
Confidence 33445555555542 444444555556666677788888887766543 3788888888888888888877777666
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 002846 447 HMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (874)
Q Consensus 447 eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~ 485 (874)
.+.. +.=|.-.+.+|.+.|+.++|..++.+...
T Consensus 740 skks------PIGy~PFVe~c~~~~n~~EA~KYiprv~~ 772 (829)
T KOG2280|consen 740 SKKS------PIGYLPFVEACLKQGNKDEAKKYIPRVGG 772 (829)
T ss_pred ccCC------CCCchhHHHHHHhcccHHHHhhhhhccCC
Confidence 6542 33455577778888888888888766543
No 257
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=39.84 E-value=3.9e+02 Score=26.59 Aligned_cols=77 Identities=16% Similarity=0.130 Sum_probs=55.5
Q ss_pred hcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHH
Q 002846 364 KKYAFQRGFEIYEKMCLDE-VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKAC 442 (874)
Q Consensus 364 k~g~~~~A~~lf~~M~~~G-v~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~ 442 (874)
..++++++..+++.|.--- -.|...+|-..| +...|++++|..+|++..+.+. ...|...|.++|-...-|-.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~~---~~p~~kAL~A~CL~al~Dp~W 96 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSAG---APPYGKALLALCLNAKGDAEW 96 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccCC---CchHHHHHHHHHHHhcCChHH
Confidence 4789999999999998642 123344555444 5688999999999999987742 336888888898776555555
Q ss_pred HHH
Q 002846 443 SVE 445 (874)
Q Consensus 443 ~l~ 445 (874)
+.+
T Consensus 97 r~~ 99 (153)
T TIGR02561 97 HVH 99 (153)
T ss_pred HHH
Confidence 544
No 258
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=39.39 E-value=4.4e+02 Score=27.02 Aligned_cols=56 Identities=16% Similarity=0.225 Sum_probs=38.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 002846 361 EDAKKYAFQRGFEIYEKMCLDEV--PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (874)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~Gv--~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~ 416 (874)
.+...|+..+|.+.|+.+....- .--....-.++.++.+.|+.+.|...+++..+.
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34577889999999998887521 112334456777888899999999999887765
No 259
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=39.14 E-value=86 Score=24.66 Aligned_cols=38 Identities=21% Similarity=0.319 Sum_probs=32.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002846 198 LDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYL 235 (874)
Q Consensus 198 I~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a 235 (874)
|...-+.|-+.++..++++|.+.|+..+...|..+|..
T Consensus 9 L~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 9 LLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 34456788999999999999999999999999988864
No 260
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=38.81 E-value=4.6e+02 Score=34.26 Aligned_cols=76 Identities=9% Similarity=0.068 Sum_probs=46.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCC
Q 002846 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEAS--LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (874)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~t--yn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~ 437 (874)
.+|-.+|++++|+.+-.+|... -|... --.|+.-+...++.-+|-+++.+-... +.-.+.-||+.-.
T Consensus 973 ~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~ 1041 (1265)
T KOG1920|consen 973 KAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKE 1041 (1265)
T ss_pred HHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhH
Confidence 3455677777887777766542 13332 245666677777777777777664332 2445666777777
Q ss_pred hhHHHHHHH
Q 002846 438 VDKACSVEE 446 (874)
Q Consensus 438 ~~~A~~l~~ 446 (874)
+++|..+-.
T Consensus 1042 ~~eAlrva~ 1050 (1265)
T KOG1920|consen 1042 WEEALRVAS 1050 (1265)
T ss_pred HHHHHHHHH
Confidence 777766543
No 261
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=38.57 E-value=72 Score=35.19 Aligned_cols=49 Identities=22% Similarity=0.289 Sum_probs=39.0
Q ss_pred CCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 002846 184 SKKDRSEQFQ-LRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVL 232 (874)
Q Consensus 184 ~~g~~Pd~~t-yn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~L 232 (874)
...+.||..+ ||..|....+.||+++|+.|++|.++.|+.-=..+|-..
T Consensus 249 ~~~v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 249 SEPMLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred CCccCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 4445677655 689999999999999999999999999987555555433
No 262
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.81 E-value=5.7e+02 Score=27.86 Aligned_cols=46 Identities=9% Similarity=0.073 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 002846 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (874)
Q Consensus 370 ~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~ 416 (874)
+|++-+.+..+. +.-|.-.|--|...|...|+++.|.-.+++|.-.
T Consensus 138 ~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 138 EAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 444444443332 3456677777777777777777777777776643
No 263
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.68 E-value=2.1e+02 Score=31.15 Aligned_cols=105 Identities=10% Similarity=0.035 Sum_probs=71.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HHhcCChhHHHHHHHHHHHCCCCCCcccH-H--HHH
Q 002846 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRM-----AMSMGDGDMAFDMVKRMKSLGINPRLRSY-G--PAL 429 (874)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~-----~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tY-n--~LI 429 (874)
+...-.+.|+.+.|...|++..+..-..|..+++.++.. |.-..++..|...+.++.... |....| | +|+
T Consensus 218 Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D--~~~~~a~NnKALc 295 (366)
T KOG2796|consen 218 LGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD--PRNAVANNNKALC 295 (366)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC--CCchhhhchHHHH
Confidence 334444679999999999988876666777777766544 334667888888887776552 222222 2 233
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 002846 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468 (874)
Q Consensus 430 ~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~ 468 (874)
..| .|+..+|.+.++.|... .|...+-++++--+|
T Consensus 296 llY--lg~l~DAiK~~e~~~~~--~P~~~l~es~~~nL~ 330 (366)
T KOG2796|consen 296 LLY--LGKLKDALKQLEAMVQQ--DPRHYLHESVLFNLT 330 (366)
T ss_pred HHH--HHHHHHHHHHHHHHhcc--CCccchhhhHHHHHH
Confidence 333 58999999999999884 477777776654443
No 264
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=36.26 E-value=1.4e+02 Score=27.41 Aligned_cols=59 Identities=12% Similarity=0.037 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHH
Q 002846 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429 (874)
Q Consensus 370 ~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI 429 (874)
++.+-++.+....+.|+.....+-+++|-+..|+..|.++|+-.+.. +..+...|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHH
Confidence 44555555556667777777777778877777777777777766532 212333455444
No 265
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=35.97 E-value=82 Score=22.65 Aligned_cols=27 Identities=19% Similarity=0.171 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002846 192 FQLRVELDMCSKRGDVMGAIRLYDKAQ 218 (874)
Q Consensus 192 ~tyn~LI~a~~k~G~~~~Al~lf~~M~ 218 (874)
.+++.|-..|...|++++|+.++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 578899999999999999999999986
No 266
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=35.52 E-value=1.3e+02 Score=29.64 Aligned_cols=85 Identities=11% Similarity=0.145 Sum_probs=61.8
Q ss_pred hhhhhchHHHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHH
Q 002846 151 VNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGD-VMGAIRLYDKAQREGIKLGQYHY 229 (874)
Q Consensus 151 ~~~~l~~~~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~-~~~Al~lf~~M~~~Gi~pd~~ty 229 (874)
.|..|. ++....+.+.-..+++.+.---..--.| .-+-.+|++++.+.++..- -..+..+|..|++.+.+++..-|
T Consensus 42 iN~iL~--hl~~~~nf~~~v~~L~~l~~l~~~~~~~-~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy 118 (145)
T PF13762_consen 42 INCILN--HLASYQNFSGVVSILEHLHFLNTDNIIG-WLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDY 118 (145)
T ss_pred HHHHHH--HHHHccchHHHHHHHHHHHHhhHHHHhh-hcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 455665 6667778888777777762210000000 1122689999999988877 56789999999999999999999
Q ss_pred HHHHHHHHh
Q 002846 230 NVLLYLCSS 238 (874)
Q Consensus 230 n~LL~a~~~ 238 (874)
-.||.+|.+
T Consensus 119 ~~li~~~l~ 127 (145)
T PF13762_consen 119 SCLIKAALR 127 (145)
T ss_pred HHHHHHHHc
Confidence 999999984
No 267
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=34.48 E-value=2e+02 Score=30.01 Aligned_cols=73 Identities=11% Similarity=0.036 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCCcccHHHHHHHHHhCCChhHHH
Q 002846 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL---GINPRLRSYGPALSVFCNNGDVDKAC 442 (874)
Q Consensus 369 ~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~---Gi~Pd~~tYn~LI~a~~k~G~~~~A~ 442 (874)
+.|.+.|-.|...+..-+....-+|..-|. ..+.++|..++-...+. +-.+|...+.+|...|-+.|+.+.|+
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 578888888888886656555555555555 67888888888877654 33567777788888888888887775
No 268
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=34.05 E-value=4.9e+02 Score=28.70 Aligned_cols=101 Identities=20% Similarity=0.175 Sum_probs=73.1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCcc-cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHH
Q 002846 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL-GINPRLR-SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELE 461 (874)
Q Consensus 384 ~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~-Gi~Pd~~-tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~ 461 (874)
+-|...|--|-..|...|+.+.|..-|..-.+. |-.|+.. -|...+..-....+..+|..+|+++.... |+..+-.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D--~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD--PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC--CccHHHH
Confidence 447889999999999999999999999887654 3333322 22223332223346678999999998754 6555444
Q ss_pred -HHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 462 -ALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 462 -~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
.|--.+...|++.+|...++.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 4445678899999999999999987
No 269
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=33.36 E-value=2.3e+02 Score=29.37 Aligned_cols=107 Identities=11% Similarity=0.115 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCcccHHHHHH-HHHhCC--ChhHHHH
Q 002846 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL--GINPRLRSYGPALS-VFCNNG--DVDKACS 443 (874)
Q Consensus 369 ~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~--Gi~Pd~~tYn~LI~-a~~k~G--~~~~A~~ 443 (874)
++|+.+-.++. -++..+-.....|++++|.+-++++.+. .++--...|.-+.. +||.++ .+.+|.-
T Consensus 20 EE~l~lsRei~---------r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~ 90 (204)
T COG2178 20 EEALKLSREIV---------RLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATL 90 (204)
T ss_pred HHHHHHHHHHH---------HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHH
Confidence 55666666554 3455555667788888888888776543 12233455666665 788776 4566776
Q ss_pred HHHHHHHcCCCCCHH----HHHHHHHHH--------------HhcCCchHHHHHHHHHHh
Q 002846 444 VEEHMLEHGVYPEEP----ELEALLRVS--------------VEAGKGDRVYYLLHKLRT 485 (874)
Q Consensus 444 l~~eM~~~Gv~Pd~~----ty~~LI~~~--------------~~~G~~d~A~~ll~~M~~ 485 (874)
++.-+... ..|... .+..-|.|. .+.|+++.|.+.++-|..
T Consensus 91 l~~~l~~~-~~ps~~EL~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 91 LYSILKDG-RLPSPEELGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHHHhcC-CCCCHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 66666543 333332 122233333 356778888888777764
No 270
>PHA03100 ankyrin repeat protein; Provisional
Probab=32.43 E-value=5.5e+02 Score=29.82 Aligned_cols=29 Identities=7% Similarity=0.078 Sum_probs=18.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 002846 195 RVELDMCSKRGDVMGAIRLYDKAQREGIKLGQY 227 (874)
Q Consensus 195 n~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~ 227 (874)
.+.+...++.|+.+-+ +.+.+.|..|+..
T Consensus 36 ~t~L~~A~~~~~~~iv----k~Ll~~g~~~~~~ 64 (480)
T PHA03100 36 VLPLYLAKEARNIDVV----KILLDNGADINSS 64 (480)
T ss_pred chhhhhhhccCCHHHH----HHHHHcCCCCCCc
Confidence 4667777888886544 4444568777653
No 271
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=32.31 E-value=1.9e+02 Score=26.62 Aligned_cols=45 Identities=16% Similarity=0.157 Sum_probs=23.3
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 002846 441 ACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (874)
Q Consensus 441 A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~ 485 (874)
+.+-++.+....+.|+.....+-+++|-+..++.-|.++|+-++.
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444444445555555555555555555555555555555443
No 272
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=32.14 E-value=3.8e+02 Score=29.20 Aligned_cols=94 Identities=13% Similarity=0.009 Sum_probs=54.1
Q ss_pred chHHHHHH-hcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHH
Q 002846 356 EIRLSEDA-KKYAFQRGFEIYEKMCLDEV----PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430 (874)
Q Consensus 356 n~lI~~~~-k~g~~~~A~~lf~~M~~~Gv----~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~ 430 (874)
..++...| .....+.|.++|+.....+. ..+...-.+++....+.|+.+.-..+++..... ++......+|.
T Consensus 133 ~~~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~ 209 (324)
T PF11838_consen 133 ALLLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLS 209 (324)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHH
T ss_pred HHHHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHH
Confidence 44455555 22346788888888777422 345556666777777777766544444444432 35555667777
Q ss_pred HHHhCCChhHHHHHHHHHHHcC
Q 002846 431 VFCNNGDVDKACSVEEHMLEHG 452 (874)
Q Consensus 431 a~~k~G~~~~A~~l~~eM~~~G 452 (874)
+++...+.+...++++.....+
T Consensus 210 aLa~~~d~~~~~~~l~~~l~~~ 231 (324)
T PF11838_consen 210 ALACSPDPELLKRLLDLLLSND 231 (324)
T ss_dssp HHTT-S-HHHHHHHHHHHHCTS
T ss_pred hhhccCCHHHHHHHHHHHcCCc
Confidence 7777777777677777666643
No 273
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=32.03 E-value=2.6e+02 Score=29.76 Aligned_cols=53 Identities=11% Similarity=0.051 Sum_probs=23.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHH
Q 002846 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEE 446 (874)
Q Consensus 393 LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~ 446 (874)
.|..+.+.+.+++|+.+..+-++.. +-|.-+-..++.-||-.|++++|..-++
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~ 59 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLN 59 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHH
Confidence 3444444455555555544443331 1222333334555555555555544333
No 274
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=31.67 E-value=1.5e+02 Score=25.57 Aligned_cols=27 Identities=19% Similarity=0.160 Sum_probs=11.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCcc
Q 002846 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLR 423 (874)
Q Consensus 393 LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~ 423 (874)
.+...+..|+.+ +++.+.+.|..++..
T Consensus 29 ~l~~A~~~~~~~----~~~~Ll~~g~~~~~~ 55 (89)
T PF12796_consen 29 ALHYAAENGNLE----IVKLLLENGADINSQ 55 (89)
T ss_dssp HHHHHHHTTTHH----HHHHHHHTTTCTT-B
T ss_pred HHHHHHHcCCHH----HHHHHHHhccccccc
Confidence 344444555533 333334455555443
No 275
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=31.16 E-value=55 Score=31.84 Aligned_cols=34 Identities=15% Similarity=0.188 Sum_probs=25.5
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHH
Q 002846 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMC 201 (874)
Q Consensus 160 ~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~ 201 (874)
+.+.+...+|..||..|.+.|. +|| .|+.||..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~------pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGN------PPD--DWDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCC------CCc--cHHHHHHHh
Confidence 3356677899999999977664 454 689998765
No 276
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.13 E-value=4.6e+02 Score=28.55 Aligned_cols=95 Identities=13% Similarity=0.122 Sum_probs=68.6
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCc-ccHHHHHHH
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEV--PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-INPRL-RSYGPALSV 431 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv--~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~G-i~Pd~-~tYn~LI~a 431 (874)
+.-++ +.+.|++..|..-|..-.+..- .-....+=-|-..+...|+.++|-.+|..+.+.- -.|.. ..+--|-..
T Consensus 146 ~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~ 224 (262)
T COG1729 146 NAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVS 224 (262)
T ss_pred HHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHH
Confidence 55554 4477889999999999887631 1122344558899999999999999999988751 11222 333445556
Q ss_pred HHhCCChhHHHHHHHHHHHc
Q 002846 432 FCNNGDVDKACSVEEHMLEH 451 (874)
Q Consensus 432 ~~k~G~~~~A~~l~~eM~~~ 451 (874)
..+.|+.++|..+|++..+.
T Consensus 225 ~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 225 LGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHhcCHHHHHHHHHHHHHH
Confidence 67889999999999999875
No 277
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=30.63 E-value=5.6e+02 Score=30.49 Aligned_cols=68 Identities=9% Similarity=0.097 Sum_probs=41.8
Q ss_pred HHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--cccHHHHHH
Q 002846 362 DAKKYAFQRGFEIYEKMCLDE-VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR--LRSYGPALS 430 (874)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~G-v~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd--~~tYn~LI~ 430 (874)
+-+.|+.++|.+.|.+|.+.. ..-+....-.||.++...+...++..++.+-.+... |+ ..+|+..+-
T Consensus 269 arklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~l-pkSAti~YTaALL 339 (539)
T PF04184_consen 269 ARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISL-PKSATICYTAALL 339 (539)
T ss_pred HHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccC-CchHHHHHHHHHH
Confidence 345678888888887776543 112344666777888888888888877776543322 33 345555443
No 278
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=30.60 E-value=94 Score=30.84 Aligned_cols=55 Identities=25% Similarity=0.457 Sum_probs=40.7
Q ss_pred ccccccccccCccc---------------ccccCCHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHhhcC
Q 002846 549 VGGDALCKCCGEKL---------------AIIDLDPIETEKFAESVASIAIKRE-RNSSFQKFQKWLDYYG 603 (874)
Q Consensus 549 vl~~G~C~~c~~~L---------------~~i~l~~ee~~~l~~~I~~~a~~~~-~~~~~~~F~~~l~~~~ 603 (874)
.....+|..||... +.-.|+++|.+.|.+.+-.+..++- ++.+..+|++++.+.+
T Consensus 65 ~~~PsYC~~CGkpyPWt~~~L~aa~el~ee~eeLs~deke~~~~sl~dL~~d~PkT~vA~~rfKk~~~K~g 135 (158)
T PF10083_consen 65 YEAPSYCHNCGKPYPWTENALEAANELIEEDEELSPDEKEQFKESLPDLTKDTPKTKVAATRFKKILSKAG 135 (158)
T ss_pred CCCChhHHhCCCCCchHHHHHHHHHHHHHHhhcCCHHHHHHHHhhhHHHhhcCCccHHHHHHHHHHHHHHh
Confidence 34568999998522 2335788899999998888877643 4577889999998864
No 279
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=30.40 E-value=5.7e+02 Score=28.22 Aligned_cols=106 Identities=11% Similarity=0.061 Sum_probs=77.2
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCL-DEVPMNEASLTAVGRMAMSM---GDGDMAFDMVKRMKSLGINPRLRSYGPALSV 431 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~-~Gv~Pd~~tyn~LI~~~~~~---G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a 431 (874)
-.|=..|...|+++.|..-|..-.+ .| +|...+..+..++... ..-.++.++|+++.... .-|+++-.-|=.+
T Consensus 160 ~~Lg~~ym~~~~~~~A~~AY~~A~rL~g--~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~lLA~~ 236 (287)
T COG4235 160 DLLGRAYMALGRASDALLAYRNALRLAG--DNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSLLAFA 236 (287)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHHHHHH
Confidence 6677899999999999999987665 34 4455555555555433 24568999999998763 2345555656678
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002846 432 FCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (874)
Q Consensus 432 ~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~ 466 (874)
+...|++.+|...|+.|.+.. |....+..+|..
T Consensus 237 afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie~ 269 (287)
T COG4235 237 AFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIER 269 (287)
T ss_pred HHHcccHHHHHHHHHHHHhcC--CCCCchHHHHHH
Confidence 889999999999999999854 655666666654
No 280
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=30.30 E-value=91 Score=23.49 Aligned_cols=28 Identities=25% Similarity=0.185 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 459 ELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 459 ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
+|..|-..|.+.|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4667778888889999999999888876
No 281
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=30.20 E-value=2.7e+02 Score=25.97 Aligned_cols=49 Identities=27% Similarity=0.379 Sum_probs=30.7
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 432 FCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 432 ~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
+.+.|++++|..+.+.+ ..||...|-+|-.. +.|..+.+..-+.+|...
T Consensus 49 LmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhccHHHHHHHHHHHHhC
Confidence 44567777777666655 35777777666443 556666666666666655
No 282
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=29.84 E-value=1.4e+02 Score=27.79 Aligned_cols=46 Identities=15% Similarity=0.057 Sum_probs=34.2
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhcCCCCChh-HHHHHHHHHhcch
Q 002846 461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS-TADVIAKWFNSKE 506 (874)
Q Consensus 461 ~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~-T~~~I~~~~~s~~ 506 (874)
.++++.+...+..-.|.++++.|+..+..++.. .|..|..+.+.|-
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 456777777777889999999999986566666 5788888877654
No 283
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=29.52 E-value=4.8e+02 Score=30.02 Aligned_cols=124 Identities=11% Similarity=0.034 Sum_probs=67.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC-----CCCC---------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccH
Q 002846 360 SEDAKKYAFQRGFEIYEKMCLD-----EVPM---------NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY 425 (874)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~-----Gv~P---------d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tY 425 (874)
+.|.+.|++..|..-|+..... +..+ -..+++.|.-+|.+.+++.+|++.-+......- +|+...
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-CchhHH
Confidence 3567889999998888775431 1211 134566677777777777777776666554421 222211
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cC-CchHHHHHHHHHHhc
Q 002846 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE-AG-KGDRVYYLLHKLRTS 486 (874)
Q Consensus 426 n~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~-~G-~~d~A~~ll~~M~~~ 486 (874)
=-==.+|...|+++.|+..|..+.+ +.|+-..-..=|..|.+ .. ..++..++|..|-..
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 1122345555677777777777666 34655444443333322 11 123345555555543
No 284
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=28.67 E-value=1e+03 Score=28.08 Aligned_cols=177 Identities=8% Similarity=0.019 Sum_probs=0.0
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHH
Q 002846 296 SSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIY 375 (874)
Q Consensus 296 ~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf 375 (874)
+.+++.+|..+|.+.... ++-.++....+.-.+-+|++|.-..--.-+..+-
T Consensus 18 kq~~~~esEkifskI~~e----------------------------~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~ 69 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDE----------------------------KESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLM 69 (549)
T ss_pred HHhhhhHHHHHHHHHHHH----------------------------hhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHH
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCcccHHH------------HHHHHHhCCChhHH
Q 002846 376 EKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL--GINPRLRSYGP------------ALSVFCNNGDVDKA 441 (874)
Q Consensus 376 ~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~--Gi~Pd~~tYn~------------LI~a~~k~G~~~~A 441 (874)
.-=+..|-.|=..-|-+|. +-+.+..++|.+.+..-.+. +-.|..---|. .++++...|++.++
T Consensus 70 ~l~~~~~~s~~l~LF~~L~--~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~Eg 147 (549)
T PF07079_consen 70 ELRQQFGKSAYLPLFKALV--AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEG 147 (549)
T ss_pred HHHHhcCCchHHHHHHHHH--HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchH
Q ss_pred HHHHHHHHHcCCC----CCHHHHHHHHHHHHhcCCchHHHHHHHHH-HhcCCCCChhHHHHHHHHHhcchHHHh
Q 002846 442 CSVEEHMLEHGVY----PEEPELEALLRVSVEAGKGDRVYYLLHKL-RTSVRKVSPSTADVIAKWFNSKEAARL 510 (874)
Q Consensus 442 ~~l~~eM~~~Gv~----Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M-~~~~~~~sp~T~~~I~~~~~s~~~~~a 510 (874)
..+++.|..+=++ .+..+|+.++-.+.+ ..|-++ ......+-|+-|.+|..+.+.....++
T Consensus 148 R~iLn~i~~~llkrE~~w~~d~yd~~vlmlsr--------SYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~ 213 (549)
T PF07079_consen 148 RAILNRIIERLLKRECEWNSDMYDRAVLMLSR--------SYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQ 213 (549)
T ss_pred HHHHHHHHHHHhhhhhcccHHHHHHHHHHHhH--------HHHHHHHHhcccccChHHHHHHHHHHHHHHHHhh
No 285
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=28.55 E-value=2.5e+02 Score=26.16 Aligned_cols=47 Identities=15% Similarity=0.149 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 440 KACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 440 ~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
+..+-+..+....+.|+.....+.|++|.|..++.-|.++|+-++.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44555566666677888888888888888888888888888877776
No 286
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=28.45 E-value=51 Score=32.02 Aligned_cols=34 Identities=18% Similarity=0.231 Sum_probs=27.8
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 002846 202 SKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCS 237 (874)
Q Consensus 202 ~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~ 237 (874)
-+.|.-..|..+|.+|.+.|-+|| .|+.||..+.
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a~ 139 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEAK 139 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHhc
Confidence 345666779999999999999997 6889887653
No 287
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=28.02 E-value=1.6e+02 Score=23.08 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=14.2
Q ss_pred hcCCchHHHHHHHHHHhcCCCCChhHHHH
Q 002846 469 EAGKGDRVYYLLHKLRTSVRKVSPSTADV 497 (874)
Q Consensus 469 ~~G~~d~A~~ll~~M~~~~~~~sp~T~~~ 497 (874)
+.|..+++..++++|...++.++|+.+..
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~ 42 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEE 42 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHH
Confidence 34444455555555555555555544433
No 288
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=26.90 E-value=20 Score=30.16 Aligned_cols=37 Identities=24% Similarity=0.580 Sum_probs=24.4
Q ss_pred HHHHHHhcCceEEeCcccccccccccCCchHHhHhhcCeeE
Q 002846 689 WLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVR 729 (874)
Q Consensus 689 ~LyAa~~~~~~~vsnD~mRdH~~~ll~~~~F~rW~~~hqv~ 729 (874)
|.-+|-..+.+-++-|+-|.|++-+ .+..||.+||--
T Consensus 20 Wy~~aA~~~g~~~~~d~ARE~vYGM----Py~eWK~~~Q~~ 56 (68)
T PF06844_consen 20 WYREAAEERGIEMDKDEAREIVYGM----PYDEWKAKHQTE 56 (68)
T ss_dssp HHHHHHHHCT----HHHHHHHHHSS-----HHHHCHCH---
T ss_pred HHHHHHHhcCCcCCHHHHHHHHhCC----CHHHHHHHHCCC
Confidence 4456666788999999999999976 799999999963
No 289
>COG2351 Transthyretin-like protein [General function prediction only]
Probab=26.81 E-value=74 Score=30.10 Aligned_cols=29 Identities=24% Similarity=0.445 Sum_probs=22.1
Q ss_pred CCCCccccCCCCceeeEe----cCCCceEeccc
Q 002846 734 DAGPEFYMPPPCSVVIQE----SEKGNWHIPIA 762 (874)
Q Consensus 734 ~~~~~~~~p~~y~~~iQ~----~~~~~WHiP~~ 762 (874)
..|..+..|+.|+.+.-+ ..+.+||||.-
T Consensus 80 ~~g~~~~~~~Fl~~V~vrF~iad~~~HYHVPLL 112 (124)
T COG2351 80 SRGVQLADPPFLDVVPVRFGIADVDEHYHVPLL 112 (124)
T ss_pred ccCcccCCCCccceEEEEEEEcCCCCceeeeeE
Confidence 457788888888888765 25679999974
No 290
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=26.68 E-value=5.5e+02 Score=26.76 Aligned_cols=94 Identities=10% Similarity=-0.111 Sum_probs=52.8
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHH-HHHhcCC--hhHHHHHHHHHHHCCCCCCc----ccHH
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLD--EVPMNEASLTAVGR-MAMSMGD--GDMAFDMVKRMKSLGINPRL----RSYG 426 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~--Gv~Pd~~tyn~LI~-~~~~~G~--~d~A~~l~~~M~~~Gi~Pd~----~tYn 426 (874)
....-...+.|++++|..-++++.+. .++--...|.-+.. ++|..+. +-+|.-++.-.... ..|.. +.+-
T Consensus 33 s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~-~~ps~~EL~V~~~ 111 (204)
T COG2178 33 SGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG-RLPSPEELGVPPI 111 (204)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC-CCCCHHHcCCCHH
Confidence 33333455677777777766666542 11112345566665 6666664 44555555554443 33442 3444
Q ss_pred HHHHHHHh--------------CCChhHHHHHHHHHHH
Q 002846 427 PALSVFCN--------------NGDVDKACSVEEHMLE 450 (874)
Q Consensus 427 ~LI~a~~k--------------~G~~~~A~~l~~eM~~ 450 (874)
.-|.|.|. .|+++.|.+.++-|..
T Consensus 112 ~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 112 AYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45555543 4788888888888865
No 291
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=26.24 E-value=3.7e+02 Score=30.92 Aligned_cols=106 Identities=14% Similarity=0.019 Sum_probs=70.7
Q ss_pred HHHhcCChhHHHHHHHHHHHC-----C---------CCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHH
Q 002846 396 MAMSMGDGDMAFDMVKRMKSL-----G---------INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELE 461 (874)
Q Consensus 396 ~~~~~G~~d~A~~l~~~M~~~-----G---------i~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~ 461 (874)
.|.+.|++..|...|+..... + ....+.+++.|-.+|.+.+++.+|.+.-+.....+ .+|+--.-
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALy 295 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALY 295 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHH
Confidence 567888888888877663321 1 12345567778888999999999998888776643 12332222
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhcCCCCChhHHHH-HHHHHhc
Q 002846 462 ALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKWFNS 504 (874)
Q Consensus 462 ~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~T~~~-I~~~~~s 504 (874)
-==.+|...|+++.|...|+.+.+. .|+-..... |..+.+.
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQK 337 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHH
Confidence 2234566778999999999999987 555445444 5555444
No 292
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=26.08 E-value=2.2e+02 Score=30.19 Aligned_cols=75 Identities=12% Similarity=0.092 Sum_probs=56.5
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCcccHHHHHHH
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL--GINPRLRSYGPALSV 431 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~--Gi~Pd~~tYn~LI~a 431 (874)
+..|+.+.+.+.+.+|+.+..+-++.. +-|..+=..|+..+|-.|++++|..-++-.-.. ...+-...|..+|.+
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 566788999999999999998777654 446677788999999999999998777654432 233445667666653
No 293
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=25.92 E-value=5e+02 Score=30.91 Aligned_cols=73 Identities=10% Similarity=-0.042 Sum_probs=51.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCC-CCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCC-CCHHHHHHHH
Q 002846 392 AVGRMAMSMGDGDMAFDMVKRMKSLG-INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVY-PEEPELEALL 464 (874)
Q Consensus 392 ~LI~~~~~~G~~d~A~~l~~~M~~~G-i~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~-Pd~~ty~~LI 464 (874)
-|..++-+.|+.++|.++|++|.+.. ..-..-....||.++...+...++..++..-.+.... --..+|++.+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 36666678999999999999998652 1122335556999999999999999999886543321 2334566544
No 294
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=24.85 E-value=9e+02 Score=26.12 Aligned_cols=102 Identities=13% Similarity=0.096 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhcCChh---HHHHHHHHHHHCCCCCC-cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 002846 388 ASLTAVGRMAMSMGDGD---MAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463 (874)
Q Consensus 388 ~tyn~LI~~~~~~G~~d---~A~~l~~~M~~~Gi~Pd-~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~L 463 (874)
.++..|+.+|...+..+ +|..+++.+.... |+ ..+|-.-|..+-+.++.+++.+++..|...- .-....+..+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~--~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~ 161 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY--GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHH
Confidence 56677777777766544 4566666664442 33 4455556666666888888888888888752 2133445555
Q ss_pred HHHH---HhcCCchHHHHHHHHHHhcCCCCChh
Q 002846 464 LRVS---VEAGKGDRVYYLLHKLRTSVRKVSPS 493 (874)
Q Consensus 464 I~~~---~~~G~~d~A~~ll~~M~~~~~~~sp~ 493 (874)
+..+ ... ....|...++++......++++
T Consensus 162 l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~ 193 (278)
T PF08631_consen 162 LHHIKQLAEK-SPELAAFCLDYLLLNRFKSSED 193 (278)
T ss_pred HHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChh
Confidence 5444 332 2346666676666664455554
No 295
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=24.39 E-value=5.9e+02 Score=27.89 Aligned_cols=114 Identities=14% Similarity=0.141 Sum_probs=71.4
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhC
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~ 435 (874)
-.++.-..+..++.+..+.+..|+. ...-...|+.+...|++..|++++.+..+. +. ....|++ +..+ .
T Consensus 102 L~Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~~-l~-~l~~~~c-~~~L--~ 170 (291)
T PF10475_consen 102 LEILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQL-LE-ELKGYSC-VRHL--S 170 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HH-hcccchH-HHHH--h
Confidence 3455666677777777777777763 455667788888999999999999987754 11 1222221 1111 1
Q ss_pred CChhHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHhcCCchHHHHHH
Q 002846 436 GDVDKACSVEEHMLEH-----GVYPEEPELEALLRVSVEAGKGDRVYYLL 480 (874)
Q Consensus 436 G~~~~A~~l~~eM~~~-----Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll 480 (874)
..+++-....+++.+. -..-|+..|..++.+|.--|+...+.+-+
T Consensus 171 ~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl 220 (291)
T PF10475_consen 171 SQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKL 220 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 2334444444443332 12578999999999998888765554333
No 296
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.21 E-value=1.3e+03 Score=27.59 Aligned_cols=109 Identities=8% Similarity=0.044 Sum_probs=70.4
Q ss_pred HHHHHHHHH-HHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHH
Q 002846 370 RGFEIYEKM-CLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (874)
Q Consensus 370 ~A~~lf~~M-~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM 448 (874)
+..+.++.. ...|+..+......+++ ...|++..|+.++++....+ ....++..+...+
T Consensus 184 ~i~~~L~~i~~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~~~--~~~it~~~V~~~l---------------- 243 (484)
T PRK14956 184 VLQDYSEKLCKIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIVFT--DSKLTGVKIRKMI---------------- 243 (484)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHHhC--CCCcCHHHHHHHh----------------
Confidence 344444443 34688878887766664 45699999999998865432 2234555443322
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCChhHHHH-HHHHHhc
Q 002846 449 LEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKWFNS 504 (874)
Q Consensus 449 ~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~T~~~-I~~~~~s 504 (874)
|+ .+...+..+++.+...+....|+.++.+|... |..|..+-. +..+++.
T Consensus 244 ---g~-~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~--G~d~~~~~~~l~~~~r~ 294 (484)
T PRK14956 244 ---GY-HGIEFLTSFIKSLIDPDNHSKSLEILESLYQE--GQDIYKFLWDSIEFTHT 294 (484)
T ss_pred ---CC-CCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHH
Confidence 32 36667777888776655567899999999998 777764433 5555544
No 297
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=24.03 E-value=1.2e+02 Score=23.64 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=15.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC
Q 002846 393 VGRMAMSMGDGDMAFDMVKRMKSL 416 (874)
Q Consensus 393 LI~~~~~~G~~d~A~~l~~~M~~~ 416 (874)
|.++|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 456666666666666666666543
No 298
>PRK15331 chaperone protein SicA; Provisional
Probab=24.01 E-value=3.3e+02 Score=27.49 Aligned_cols=88 Identities=11% Similarity=0.029 Sum_probs=60.7
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHH-hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCch
Q 002846 396 MAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC-NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGD 474 (874)
Q Consensus 396 ~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~-k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d 474 (874)
-+-..|++++|..+|.-+...+ |--.-|--=|.+++ ..++.++|...|......+. -|...+--+=.++...|+.+
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHH
Confidence 3457899999999999887653 33333444444444 56899999999987655432 22222333445667789999
Q ss_pred HHHHHHHHHHhc
Q 002846 475 RVYYLLHKLRTS 486 (874)
Q Consensus 475 ~A~~ll~~M~~~ 486 (874)
.|...|.....+
T Consensus 123 ~A~~~f~~a~~~ 134 (165)
T PRK15331 123 KARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHhC
Confidence 999999988875
No 299
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=23.46 E-value=3.9e+02 Score=24.84 Aligned_cols=26 Identities=12% Similarity=0.217 Sum_probs=15.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 002846 390 LTAVGRMAMSMGDGDMAFDMVKRMKS 415 (874)
Q Consensus 390 yn~LI~~~~~~G~~d~A~~l~~~M~~ 415 (874)
|..|+..|...|..++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 56666666666666666666665554
No 300
>PRK11906 transcriptional regulator; Provisional
Probab=23.29 E-value=5.4e+02 Score=30.26 Aligned_cols=111 Identities=13% Similarity=0.129 Sum_probs=71.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc---ccHHHHHHHHHhCCChhHHH
Q 002846 366 YAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL---RSYGPALSVFCNNGDVDKAC 442 (874)
Q Consensus 366 g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~---~tYn~LI~a~~k~G~~~~A~ 442 (874)
....+|.++-+.-.+.+ .-|......+-.+..-.|+.+.|..+|++-... .||. ..|..++.. -+|+.++|.
T Consensus 318 ~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~--~~G~~~~a~ 392 (458)
T PRK11906 318 LAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHF--HNEKIEEAR 392 (458)
T ss_pred HHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHH--HcCCHHHHH
Confidence 35566777777666654 346777777777778888899999999987654 5653 344444443 369999999
Q ss_pred HHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCchHHHHHHHH
Q 002846 443 SVEEHMLE-HGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482 (874)
Q Consensus 443 ~l~~eM~~-~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~ 482 (874)
+.+++-.+ .-...-.....-.|+.|+..+ +|.|..++-+
T Consensus 393 ~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 393 ICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred HHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHhh
Confidence 98888443 222223334444556777655 5777777644
No 301
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=22.64 E-value=6.5e+02 Score=23.70 Aligned_cols=128 Identities=20% Similarity=0.173 Sum_probs=92.7
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHH-HHH
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLD-EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS-VFC 433 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~-Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~-a~~ 433 (874)
......+...+.+..+...+...... ........+..+...+...+....+...+.........+ ......... .+.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 141 (291)
T COG0457 63 LLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGALY 141 (291)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHH
Confidence 55667777888899999988887753 334566777888888888889999999999887654333 122222233 688
Q ss_pred hCCChhHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 434 NNGDVDKACSVEEHMLEHGVYP----EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 434 k~G~~~~A~~l~~eM~~~Gv~P----d~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
..|+.+.|...+..... ..| ....+......+...++.+.|...+.+....
T Consensus 142 ~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 142 ELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred HcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 99999999999999855 333 3344444445567788999999999988876
No 302
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=22.60 E-value=2.8e+02 Score=26.26 Aligned_cols=27 Identities=4% Similarity=-0.086 Sum_probs=24.7
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDE 382 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~G 382 (874)
-++|+.+.++.-.++|+++.+-|.++|
T Consensus 65 PtViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 65 PTVIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred ChHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 788888999999999999999999988
No 303
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=21.96 E-value=1.3e+02 Score=20.13 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=12.3
Q ss_pred HHHHHHHHhcCChhHHHHHHH
Q 002846 391 TAVGRMAMSMGDGDMAFDMVK 411 (874)
Q Consensus 391 n~LI~~~~~~G~~d~A~~l~~ 411 (874)
..+...+...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345555666666666666554
No 304
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=21.94 E-value=2.8e+02 Score=28.16 Aligned_cols=34 Identities=12% Similarity=0.067 Sum_probs=25.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 453 VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 453 v~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
..|+...|..++..+...|+.++|.+++.++..-
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4577777777777777777777777777777765
No 305
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=21.75 E-value=7.8e+02 Score=24.23 Aligned_cols=87 Identities=17% Similarity=0.164 Sum_probs=62.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHH-------HH
Q 002846 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV-------FC 433 (874)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a-------~~ 433 (874)
+++..|+++.|++.|.+-..- .+-....||.=..++--.|+.++|++=+++-.+..- |..+| .-.+ |-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag-~~trt---acqa~vQRg~lyR 126 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAG-DQTRT---ACQAFVQRGLLYR 126 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcC-ccchH---HHHHHHHHHHHHH
Confidence 456789999999999876653 234678999999999999999999998887765411 22221 2233 33
Q ss_pred hCCChhHHHHHHHHHHHcC
Q 002846 434 NNGDVDKACSVEEHMLEHG 452 (874)
Q Consensus 434 k~G~~~~A~~l~~eM~~~G 452 (874)
..|+.+.|..=|+...+-|
T Consensus 127 l~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HhCchHHHHHhHHHHHHhC
Confidence 4578888888887766555
No 306
>TIGR00305 probable toxin-antitoxin system toxin component, PIN family. This uncharacterized protein family, part of the PIN domain superfamily, is restricted to bacteria and archaea. A comprehensive in silico study of toxin-antitoxin systems by Makarova, et al. (2009) finds evidence this family represents the toxin-like component of one class of type 2 toxin-antitoxin systems.
Probab=21.38 E-value=72 Score=29.54 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=19.7
Q ss_pred CCCccHHHHHHHHhcCc-eEEeCc
Q 002846 682 GSNDDWYWLYAAIKFKC-LLVTND 704 (874)
Q Consensus 682 ~s~DD~y~LyAa~~~~~-~~vsnD 704 (874)
..-||..++-+|+..+| +|||+|
T Consensus 85 ~D~~D~~~l~~A~~~~ad~iVT~D 108 (114)
T TIGR00305 85 RDKKDNKFLNTAYASKANALITGD 108 (114)
T ss_pred CCchhHHHHHHHHhcCCCEEEECC
Confidence 35678888999999887 999999
No 307
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=20.59 E-value=8.2e+02 Score=24.07 Aligned_cols=89 Identities=19% Similarity=0.174 Sum_probs=61.8
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHc-CCCCCHHHHHHHH-H--HHHhcC
Q 002846 396 MAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH-GVYPEEPELEALL-R--VSVEAG 471 (874)
Q Consensus 396 ~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~-Gv~Pd~~ty~~LI-~--~~~~~G 471 (874)
+++..|+++.|++.|.+-... ++-+...||.--.++--.|+.++|++=+++..+- |-. +.....+.+ + .|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 467889999999999987665 3346778999999999999999999888877654 322 222222221 1 134567
Q ss_pred CchHHHHHHHHHHhc
Q 002846 472 KGDRVYYLLHKLRTS 486 (874)
Q Consensus 472 ~~d~A~~ll~~M~~~ 486 (874)
+.|.|..=|..-.+-
T Consensus 130 ~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 130 NDDAARADFEAAAQL 144 (175)
T ss_pred chHHHHHhHHHHHHh
Confidence 777777777766554
No 308
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=20.42 E-value=2.8e+02 Score=32.04 Aligned_cols=44 Identities=5% Similarity=-0.178 Sum_probs=31.9
Q ss_pred HHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHH
Q 002846 304 DSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEK 377 (874)
Q Consensus 304 ~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~ 377 (874)
..+++.+.+.|+.|++++=+ ...++|.++.-.+..++..+++..
T Consensus 99 ~Gv~kaL~e~gl~p~~i~Gt------------------------------S~Gaivaa~~a~~~~~e~~~~l~~ 142 (391)
T cd07229 99 LGVVKALWLRGLLPRIITGT------------------------------ATGALIAALVGVHTDEELLRFLDG 142 (391)
T ss_pred HHHHHHHHHcCCCCceEEEe------------------------------cHHHHHHHHHHcCCHHHHHHHHhc
Confidence 35677888999999988762 227777777777777777777653
No 309
>PF13470 PIN_3: PIN domain
Probab=20.29 E-value=81 Score=29.14 Aligned_cols=23 Identities=43% Similarity=0.342 Sum_probs=19.4
Q ss_pred CCccHHHHHHHHhcC-ceEEeCcc
Q 002846 683 SNDDWYWLYAAIKFK-CLLVTNDE 705 (874)
Q Consensus 683 s~DD~y~LyAa~~~~-~~~vsnD~ 705 (874)
.-||..++.+|+..+ .+|||+|.
T Consensus 95 D~~D~~~la~A~~~~ad~iVT~D~ 118 (119)
T PF13470_consen 95 DPDDAHVLAAAIAAKADYIVTGDK 118 (119)
T ss_pred CccHHHHHHHHHHcCCCEEEeCCC
Confidence 578899999999976 48999985
Done!