Query 002846
Match_columns 874
No_of_seqs 602 out of 3379
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 03:54:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002846.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002846hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 1.2E-99 4E-104 887.4 47.0 476 267-783 14-501 (501)
2 4g26_A Pentatricopeptide repea 100.0 3.5E-32 1.2E-36 317.6 20.7 216 168-470 8-223 (501)
3 2xpi_A Anaphase-promoting comp 99.9 1.8E-20 6.2E-25 219.9 28.2 289 147-486 83-436 (597)
4 2xpi_A Anaphase-promoting comp 99.9 6.8E-20 2.3E-24 215.0 29.7 308 147-486 149-545 (597)
5 3v33_A Ribonuclease ZC3H12A; r 99.8 3.9E-20 1.3E-24 188.2 7.7 124 604-733 24-159 (223)
6 3v32_B Ribonuclease ZC3H12A; r 99.8 1.5E-19 5.1E-24 180.2 7.8 124 604-733 24-159 (185)
7 3spa_A Mtrpol, DNA-directed RN 99.8 2.1E-19 7.2E-24 217.2 8.1 116 356-471 131-250 (1134)
8 3spa_A Mtrpol, DNA-directed RN 99.8 1.1E-19 3.8E-24 219.7 4.9 150 278-471 127-286 (1134)
9 1w3b_A UDP-N-acetylglucosamine 99.5 1.4E-12 4.8E-17 144.6 29.0 279 159-486 76-368 (388)
10 1w3b_A UDP-N-acetylglucosamine 99.5 1.3E-11 4.3E-16 136.9 34.9 296 160-507 9-321 (388)
11 2y4t_A DNAJ homolog subfamily 99.5 1.4E-11 4.6E-16 138.7 30.0 285 159-486 35-358 (450)
12 2y4t_A DNAJ homolog subfamily 99.4 1E-11 3.6E-16 139.6 26.2 276 190-510 25-348 (450)
13 2gw1_A Mitochondrial precursor 99.2 1.9E-09 6.6E-14 122.7 27.4 285 159-486 15-401 (514)
14 3hym_B Cell division cycle pro 99.2 1.1E-08 3.6E-13 109.2 28.5 260 159-486 31-299 (330)
15 1fch_A Peroxisomal targeting s 99.2 2.1E-09 7E-14 117.2 23.1 272 164-486 39-314 (368)
16 4eqf_A PEX5-related protein; a 99.2 9E-10 3.1E-14 120.7 19.9 246 190-486 64-310 (365)
17 3cv0_A Peroxisome targeting si 99.2 5E-09 1.7E-13 111.5 25.2 257 159-483 30-312 (327)
18 1b89_A Protein (clathrin heavy 99.2 2.6E-11 9E-16 137.3 7.6 225 159-486 12-236 (449)
19 3ieg_A DNAJ homolog subfamily 99.1 2.9E-08 9.9E-13 106.7 29.8 279 159-486 12-335 (359)
20 3mkr_A Coatomer subunit epsilo 99.1 6.2E-09 2.1E-13 112.2 21.3 243 199-486 7-264 (291)
21 2gw1_A Mitochondrial precursor 99.0 1.3E-08 4.4E-13 115.9 23.6 268 162-493 201-483 (514)
22 3ieg_A DNAJ homolog subfamily 99.0 5.5E-08 1.9E-12 104.5 27.0 275 191-510 3-325 (359)
23 3hym_B Cell division cycle pro 99.0 2.8E-08 9.4E-13 105.9 24.4 234 192-486 23-265 (330)
24 3cv0_A Peroxisome targeting si 99.0 4.8E-08 1.6E-12 103.9 26.2 246 192-486 22-269 (327)
25 3mkr_A Coatomer subunit epsilo 99.0 2.1E-08 7.2E-13 108.0 21.1 241 159-477 43-285 (291)
26 1b89_A Protein (clathrin heavy 99.0 1.5E-09 5.3E-14 122.9 11.2 187 203-481 15-201 (449)
27 3uq3_A Heat shock protein STI1 98.9 5.3E-08 1.8E-12 99.8 21.4 225 192-486 6-236 (258)
28 3fp2_A TPR repeat-containing p 98.9 5.5E-08 1.9E-12 111.6 22.4 84 159-260 34-117 (537)
29 1fch_A Peroxisomal targeting s 98.9 4.6E-08 1.6E-12 106.4 20.2 258 159-482 73-355 (368)
30 2ho1_A Type 4 fimbrial biogene 98.9 1.1E-07 3.8E-12 97.8 21.6 199 192-486 38-238 (252)
31 2vq2_A PILW, putative fimbrial 98.9 1.4E-07 4.7E-12 94.5 21.5 202 191-486 8-211 (225)
32 4eqf_A PEX5-related protein; a 98.9 3.5E-08 1.2E-12 107.9 18.0 258 159-482 74-352 (365)
33 3fp2_A TPR repeat-containing p 98.8 9.8E-07 3.4E-11 101.1 26.9 261 164-493 216-496 (537)
34 2ho1_A Type 4 fimbrial biogene 98.8 7.6E-07 2.6E-11 91.5 22.1 179 294-511 47-229 (252)
35 2vq2_A PILW, putative fimbrial 98.7 7.6E-07 2.6E-11 89.0 21.4 175 279-498 9-188 (225)
36 1xnf_A Lipoprotein NLPI; TPR, 98.7 6E-08 2.1E-12 100.7 12.7 84 163-260 18-101 (275)
37 1xnf_A Lipoprotein NLPI; TPR, 98.6 8.2E-07 2.8E-11 92.0 17.8 222 203-486 17-244 (275)
38 1ouv_A Conserved hypothetical 98.6 2.1E-05 7.1E-10 82.3 28.4 226 191-486 6-251 (273)
39 2q7f_A YRRB protein; TPR, prot 98.6 6.4E-07 2.2E-11 91.0 16.1 200 190-486 22-222 (243)
40 3uq3_A Heat shock protein STI1 98.6 4.6E-06 1.6E-10 85.1 22.0 217 159-451 14-236 (258)
41 2q7f_A YRRB protein; TPR, prot 98.6 1.4E-06 4.8E-11 88.4 17.2 187 279-511 24-213 (243)
42 3nf1_A KLC 1, kinesin light ch 98.5 9.9E-07 3.4E-11 92.9 15.9 245 190-485 26-306 (311)
43 2ond_A Cleavage stimulation fa 98.5 2.5E-05 8.6E-10 83.9 24.8 227 208-486 33-270 (308)
44 2pl2_A Hypothetical conserved 98.5 3.2E-06 1.1E-10 86.2 16.8 210 189-484 3-212 (217)
45 2pl2_A Hypothetical conserved 98.4 4.3E-06 1.5E-10 85.3 17.3 200 223-510 2-204 (217)
46 3u4t_A TPR repeat-containing p 98.4 2.7E-05 9.2E-10 80.6 21.8 128 356-486 112-250 (272)
47 1ouv_A Conserved hypothetical 98.3 0.00015 5.1E-09 75.7 25.3 217 160-452 16-252 (273)
48 3as5_A MAMA; tetratricopeptide 98.3 2E-05 6.8E-10 75.6 17.0 156 294-486 18-173 (186)
49 2fo7_A Synthetic consensus TPR 98.3 1.7E-05 5.9E-10 71.5 15.4 128 356-486 5-132 (136)
50 3ro2_A PINS homolog, G-protein 98.3 6.3E-06 2.2E-10 86.9 13.9 274 159-486 14-332 (338)
51 2ooe_A Cleavage stimulation fa 98.3 0.00012 4.2E-09 84.7 25.8 302 161-497 23-430 (530)
52 2ond_A Cleavage stimulation fa 98.2 7E-05 2.4E-09 80.4 21.5 219 167-452 33-271 (308)
53 3sf4_A G-protein-signaling mod 98.2 9E-06 3.1E-10 89.0 14.1 266 188-485 6-335 (406)
54 2h6f_A Protein farnesyltransfe 98.2 9.7E-05 3.3E-09 82.7 22.1 231 192-486 98-348 (382)
55 4a1s_A PINS, partner of inscut 98.2 8.8E-06 3E-10 89.9 12.4 272 159-486 57-372 (411)
56 3edt_B KLC 2, kinesin light ch 98.1 3.5E-05 1.2E-09 79.3 15.0 130 356-485 131-280 (283)
57 3nf1_A KLC 1, kinesin light ch 98.1 3.3E-05 1.1E-09 81.1 14.8 241 159-450 36-306 (311)
58 3as5_A MAMA; tetratricopeptide 98.1 9.9E-05 3.4E-09 70.7 17.0 154 248-451 20-173 (186)
59 1xi4_A Clathrin heavy chain; a 98.1 0.00022 7.5E-09 89.9 23.8 242 159-484 1058-1307(1630)
60 2xm6_A Protein corresponding t 98.1 0.0013 4.3E-08 75.3 28.4 113 365-486 272-396 (490)
61 4a1s_A PINS, partner of inscut 98.0 3.3E-05 1.1E-09 85.3 14.0 246 192-486 49-332 (411)
62 2xm6_A Protein corresponding t 98.0 0.0033 1.1E-07 71.8 31.3 245 163-486 92-360 (490)
63 3u4t_A TPR repeat-containing p 98.0 0.00016 5.4E-09 74.7 18.3 189 248-486 15-208 (272)
64 2fo7_A Synthetic consensus TPR 98.0 6E-05 2.1E-09 67.9 13.2 122 294-451 11-132 (136)
65 3ro2_A PINS homolog, G-protein 98.0 7.5E-05 2.6E-09 78.5 15.2 243 193-486 7-292 (338)
66 3vtx_A MAMA; tetratricopeptide 97.9 0.00041 1.4E-08 67.5 18.4 165 279-486 6-170 (184)
67 2ooe_A Cleavage stimulation fa 97.9 0.0005 1.7E-08 79.5 21.9 269 164-486 192-492 (530)
68 4abn_A Tetratricopeptide repea 97.9 7.9E-05 2.7E-09 85.6 14.9 212 207-483 84-318 (474)
69 3sf4_A G-protein-signaling mod 97.8 0.00012 4.3E-09 79.8 13.8 256 159-450 18-335 (406)
70 2h6f_A Protein farnesyltransfe 97.8 0.00075 2.6E-08 75.5 20.3 238 159-467 106-363 (382)
71 1hz4_A MALT regulatory protein 97.8 0.0021 7.3E-08 69.9 23.5 273 160-485 24-321 (373)
72 3vtx_A MAMA; tetratricopeptide 97.8 0.0012 4E-08 64.2 19.2 165 191-450 5-169 (184)
73 4g1t_A Interferon-induced prot 97.8 0.0014 4.9E-08 73.6 22.6 294 159-486 60-401 (472)
74 3ulq_A Response regulator aspa 97.7 0.00044 1.5E-08 76.1 16.5 235 199-485 111-367 (383)
75 1qqe_A Vesicular transport pro 97.7 0.0015 5.1E-08 69.4 20.0 127 356-484 121-267 (292)
76 1hz4_A MALT regulatory protein 97.7 0.0017 5.9E-08 70.7 20.6 236 199-486 22-282 (373)
77 1xi4_A Clathrin heavy chain; a 97.7 0.0091 3.1E-07 75.7 28.3 245 160-481 1086-1340(1630)
78 4abn_A Tetratricopeptide repea 97.7 0.0014 4.8E-08 75.1 19.6 165 277-486 101-287 (474)
79 4i17_A Hypothetical protein; T 97.5 0.0031 1E-07 63.6 17.3 142 294-473 17-169 (228)
80 4g1t_A Interferon-induced prot 97.5 0.0071 2.4E-07 67.8 22.1 266 191-493 51-368 (472)
81 4gyw_A UDP-N-acetylglucosamine 97.4 0.0024 8.2E-08 77.4 18.2 162 279-485 10-173 (723)
82 3edt_B KLC 2, kinesin light ch 97.4 0.00024 8.3E-09 72.9 8.1 131 356-486 47-198 (283)
83 3q15_A PSP28, response regulat 97.4 0.0014 4.8E-08 72.1 14.7 233 200-485 110-364 (378)
84 2ifu_A Gamma-SNAP; membrane fu 97.3 0.0087 3E-07 63.9 18.4 115 360-479 124-254 (307)
85 3ulq_A Response regulator aspa 97.2 0.0027 9.2E-08 69.7 14.5 235 159-450 112-367 (383)
86 3mv2_B Coatomer subunit epsilo 97.2 0.0018 6.1E-08 70.2 12.4 126 356-485 104-239 (310)
87 1na0_A Designed protein CTPR3; 97.2 0.0056 1.9E-07 54.0 13.8 97 388-486 10-106 (125)
88 4i17_A Hypothetical protein; T 97.2 0.018 6.1E-07 57.8 19.0 194 190-486 6-209 (228)
89 1hh8_A P67PHOX, NCF-2, neutrop 97.2 0.0085 2.9E-07 59.3 15.9 124 358-486 12-150 (213)
90 2vsy_A XCC0866; transferase, g 97.2 0.0049 1.7E-07 71.9 16.3 128 356-486 27-157 (568)
91 1na0_A Designed protein CTPR3; 97.1 0.009 3.1E-07 52.6 14.3 107 357-467 14-121 (125)
92 4gyw_A UDP-N-acetylglucosamine 97.1 0.0082 2.8E-07 72.7 17.9 61 188-260 5-67 (723)
93 3mv2_B Coatomer subunit epsilo 97.1 0.0082 2.8E-07 65.0 15.8 159 294-492 110-286 (310)
94 3qky_A Outer membrane assembly 97.0 0.013 4.5E-07 60.4 16.4 162 294-492 25-228 (261)
95 3q15_A PSP28, response regulat 97.0 0.0098 3.3E-07 65.2 15.8 234 160-450 111-364 (378)
96 1a17_A Serine/threonine protei 96.9 0.0084 2.9E-07 56.3 13.0 126 356-485 17-145 (166)
97 2yhc_A BAMD, UPF0169 lipoprote 96.9 0.024 8.1E-07 57.4 16.6 158 294-486 14-213 (225)
98 2vyi_A SGTA protein; chaperone 96.9 0.019 6.6E-07 50.9 14.1 114 356-472 16-129 (131)
99 3u3w_A Transcriptional activat 96.8 0.024 8.3E-07 59.7 16.1 163 294-485 85-265 (293)
100 2r5s_A Uncharacterized protein 96.7 0.0096 3.3E-07 57.8 11.8 126 356-485 44-172 (176)
101 1elr_A TPR2A-domain of HOP; HO 96.7 0.014 4.9E-07 51.9 12.0 104 388-494 5-114 (131)
102 2e2e_A Formate-dependent nitri 96.7 0.011 3.6E-07 57.1 11.9 122 362-486 20-144 (177)
103 1hh8_A P67PHOX, NCF-2, neutrop 96.7 0.026 8.8E-07 55.7 15.0 120 294-452 16-151 (213)
104 1qqe_A Vesicular transport pro 96.7 0.0058 2E-07 64.8 10.7 165 294-486 47-228 (292)
105 2kck_A TPR repeat; tetratricop 96.7 0.0094 3.2E-07 51.6 10.1 96 388-486 7-106 (112)
106 2ifu_A Gamma-SNAP; membrane fu 96.7 0.025 8.4E-07 60.4 15.4 128 356-484 80-222 (307)
107 2yhc_A BAMD, UPF0169 lipoprote 96.6 0.11 3.8E-06 52.3 19.5 86 363-452 107-214 (225)
108 3urz_A Uncharacterized protein 96.5 0.059 2E-06 53.8 16.3 176 294-496 14-194 (208)
109 2lni_A Stress-induced-phosphop 96.5 0.019 6.6E-07 51.4 11.1 98 387-486 16-113 (133)
110 3qou_A Protein YBBN; thioredox 96.4 0.019 6.6E-07 60.8 12.6 120 363-486 128-248 (287)
111 3qky_A Outer membrane assembly 96.4 0.065 2.2E-06 55.0 16.4 84 365-452 110-225 (261)
112 2kck_A TPR repeat; tetratricop 96.4 0.032 1.1E-06 48.1 12.0 95 356-452 10-107 (112)
113 1elw_A TPR1-domain of HOP; HOP 96.4 0.061 2.1E-06 46.6 13.9 98 387-486 4-101 (118)
114 2lni_A Stress-induced-phosphop 96.4 0.046 1.6E-06 48.8 13.3 109 358-470 22-131 (133)
115 3gw4_A Uncharacterized protein 96.4 0.0082 2.8E-07 58.6 8.8 131 356-486 30-176 (203)
116 2vyi_A SGTA protein; chaperone 96.3 0.065 2.2E-06 47.3 13.7 99 386-486 11-109 (131)
117 2qfc_A PLCR protein; TPR, HTH, 96.3 0.066 2.2E-06 56.4 15.8 163 294-484 85-264 (293)
118 1elr_A TPR2A-domain of HOP; HO 96.3 0.02 6.7E-07 51.0 10.0 108 356-466 8-121 (131)
119 2vsy_A XCC0866; transferase, g 96.2 0.061 2.1E-06 62.5 16.5 118 365-486 2-120 (568)
120 2pzi_A Probable serine/threoni 96.2 0.037 1.3E-06 66.3 14.9 126 356-486 437-563 (681)
121 4e6h_A MRNA 3'-END-processing 96.2 0.077 2.6E-06 63.6 17.0 244 208-502 326-584 (679)
122 1elw_A TPR1-domain of HOP; HOP 96.1 0.057 2E-06 46.8 12.1 95 356-452 8-102 (118)
123 3u3w_A Transcriptional activat 96.1 0.053 1.8E-06 57.1 13.9 128 358-485 81-224 (293)
124 4ga2_A E3 SUMO-protein ligase 96.1 0.024 8.1E-07 53.8 10.1 130 364-501 9-143 (150)
125 4gco_A Protein STI-1; structur 96.1 0.053 1.8E-06 49.8 12.2 88 361-450 22-109 (126)
126 2xev_A YBGF; tetratricopeptide 96.1 0.11 3.8E-06 46.4 14.2 90 393-486 8-105 (129)
127 1p5q_A FKBP52, FK506-binding p 96.1 0.055 1.9E-06 58.7 14.0 128 356-486 151-294 (336)
128 2dba_A Smooth muscle cell asso 96.1 0.12 4.2E-06 47.0 14.5 98 386-486 27-128 (148)
129 3q49_B STIP1 homology and U bo 96.1 0.084 2.9E-06 47.8 13.2 100 385-486 7-106 (137)
130 3gyz_A Chaperone protein IPGC; 96.0 0.07 2.4E-06 51.1 12.9 90 360-451 44-133 (151)
131 3gyz_A Chaperone protein IPGC; 96.0 0.084 2.9E-06 50.5 13.3 101 387-493 36-138 (151)
132 2qfc_A PLCR protein; TPR, HTH, 96.0 0.27 9.3E-06 51.5 18.5 94 356-449 159-264 (293)
133 4ga2_A E3 SUMO-protein ligase 95.9 0.035 1.2E-06 52.6 10.3 111 357-472 36-149 (150)
134 2e2e_A Formate-dependent nitri 95.9 0.023 7.9E-07 54.6 9.1 123 294-452 20-145 (177)
135 2pzi_A Probable serine/threoni 95.8 0.03 1E-06 67.2 11.2 172 248-472 403-583 (681)
136 4gco_A Protein STI-1; structur 95.7 0.13 4.6E-06 47.0 13.1 96 389-486 15-110 (126)
137 4e6h_A MRNA 3'-END-processing 95.7 0.068 2.3E-06 64.1 13.8 231 169-467 328-584 (679)
138 1a17_A Serine/threonine protei 95.7 0.2 6.9E-06 46.5 14.6 98 387-486 13-110 (166)
139 3qou_A Protein YBBN; thioredox 95.7 0.083 2.8E-06 55.8 13.0 122 384-511 114-239 (287)
140 3upv_A Heat shock protein STI1 95.6 0.14 4.8E-06 46.0 12.7 89 360-450 12-100 (126)
141 3sz7_A HSC70 cochaperone (SGT) 95.6 0.095 3.3E-06 49.7 12.1 99 386-486 10-108 (164)
142 2r5s_A Uncharacterized protein 95.6 0.032 1.1E-06 54.0 8.6 152 248-450 18-172 (176)
143 3upv_A Heat shock protein STI1 95.5 0.13 4.6E-06 46.1 12.2 98 387-486 4-101 (126)
144 3ro3_A PINS homolog, G-protein 95.5 0.033 1.1E-06 51.1 8.2 130 356-485 13-157 (164)
145 4gcn_A Protein STI-1; structur 95.5 0.092 3.1E-06 48.1 11.1 100 392-495 13-119 (127)
146 2xcb_A PCRH, regulatory protei 95.5 0.1 3.4E-06 48.5 11.5 92 392-485 23-114 (142)
147 2dba_A Smooth muscle cell asso 95.5 0.16 5.6E-06 46.1 12.8 93 356-451 32-128 (148)
148 3q49_B STIP1 homology and U bo 95.5 0.11 3.8E-06 47.0 11.5 93 356-450 13-105 (137)
149 3rjv_A Putative SEL1 repeat pr 95.4 0.83 2.9E-05 45.5 18.8 86 365-452 102-198 (212)
150 2xcb_A PCRH, regulatory protei 95.4 0.12 4.1E-06 48.0 11.6 90 360-451 26-115 (142)
151 2vgx_A Chaperone SYCD; alterna 95.4 0.12 4E-06 48.8 11.7 99 386-486 20-118 (148)
152 4f3v_A ESX-1 secretion system 95.3 0.087 3E-06 56.2 11.5 127 358-491 108-240 (282)
153 3rjv_A Putative SEL1 repeat pr 95.3 0.28 9.7E-06 49.0 14.9 122 356-486 22-158 (212)
154 2vgx_A Chaperone SYCD; alterna 95.3 0.14 4.9E-06 48.2 11.9 94 356-451 25-118 (148)
155 3dra_A Protein farnesyltransfe 95.2 1.7 5.7E-05 46.7 21.5 220 205-486 47-287 (306)
156 3gw4_A Uncharacterized protein 95.1 0.074 2.5E-06 51.5 9.6 122 363-485 3-135 (203)
157 2fbn_A 70 kDa peptidylprolyl i 95.1 0.17 5.9E-06 49.5 12.4 118 357-477 43-176 (198)
158 3e4b_A ALGK; tetratricopeptide 95.0 0.7 2.4E-05 52.1 18.8 120 356-484 180-314 (452)
159 3k9i_A BH0479 protein; putativ 95.0 0.024 8.3E-07 50.9 5.3 86 365-451 3-90 (117)
160 3sz7_A HSC70 cochaperone (SGT) 95.0 0.34 1.2E-05 45.7 13.9 94 356-451 15-108 (164)
161 4b4t_Q 26S proteasome regulato 95.0 1.4 4.6E-05 48.3 20.6 121 365-485 108-244 (434)
162 2xev_A YBGF; tetratricopeptide 94.9 0.31 1.1E-05 43.3 12.6 95 359-458 9-110 (129)
163 4gcn_A Protein STI-1; structur 94.9 0.19 6.4E-06 46.0 11.2 100 360-462 16-121 (127)
164 4b4t_Q 26S proteasome regulato 94.7 0.3 1E-05 53.6 14.4 175 294-485 14-203 (434)
165 1p5q_A FKBP52, FK506-binding p 94.7 0.13 4.5E-06 55.7 11.3 143 279-449 148-292 (336)
166 3urz_A Uncharacterized protein 94.6 0.42 1.4E-05 47.4 14.0 117 361-483 13-150 (208)
167 1hxi_A PEX5, peroxisome target 94.4 0.15 5.2E-06 46.2 9.1 88 360-450 25-113 (121)
168 1wao_1 Serine/threonine protei 94.3 0.12 4.1E-06 59.1 10.1 117 361-481 15-134 (477)
169 1hxi_A PEX5, peroxisome target 94.2 0.24 8.3E-06 44.9 10.1 93 390-486 20-114 (121)
170 3e4b_A ALGK; tetratricopeptide 93.9 1.5 5E-05 49.5 18.0 112 364-486 263-387 (452)
171 3ro3_A PINS homolog, G-protein 93.7 0.12 4E-06 47.3 7.0 129 294-450 19-157 (164)
172 2fbn_A 70 kDa peptidylprolyl i 93.6 1.3 4.4E-05 43.1 14.8 126 359-486 11-151 (198)
173 3k9i_A BH0479 protein; putativ 93.6 0.083 2.8E-06 47.2 5.5 87 399-486 2-90 (117)
174 1wao_1 Serine/threonine protei 93.3 0.4 1.4E-05 54.8 12.0 116 294-446 16-134 (477)
175 2c2l_A CHIP, carboxy terminus 93.1 0.71 2.4E-05 48.3 12.8 88 360-450 12-100 (281)
176 3n71_A Histone lysine methyltr 93.1 0.19 6.6E-06 57.8 9.0 126 361-486 318-464 (490)
177 3dra_A Protein farnesyltransfe 93.1 3 0.0001 44.6 17.9 226 160-450 43-286 (306)
178 3q7a_A Farnesyltransferase alp 93.0 5.9 0.0002 43.2 20.2 223 205-486 68-331 (349)
179 3rkv_A Putative peptidylprolyl 92.7 0.48 1.7E-05 44.5 9.9 90 360-450 19-125 (162)
180 4f3v_A ESX-1 secretion system 92.7 0.37 1.3E-05 51.2 9.8 132 294-463 112-247 (282)
181 3n71_A Histone lysine methyltr 92.7 0.63 2.2E-05 53.5 12.5 59 160-218 319-378 (490)
182 1kt0_A FKBP51, 51 kDa FK506-bi 92.4 0.65 2.2E-05 52.5 12.0 127 356-485 272-414 (457)
183 2l6j_A TPR repeat-containing p 92.2 0.48 1.7E-05 40.7 8.4 90 386-478 3-99 (111)
184 2c2l_A CHIP, carboxy terminus 91.9 0.81 2.8E-05 47.9 11.3 98 386-486 3-101 (281)
185 2kat_A Uncharacterized protein 91.8 0.48 1.7E-05 41.7 8.1 77 371-449 4-80 (115)
186 1ihg_A Cyclophilin 40; ppiase 91.7 0.67 2.3E-05 51.0 10.7 117 356-476 227-360 (370)
187 1klx_A Cysteine rich protein B 90.9 1.8 6E-05 40.1 11.3 111 365-486 8-126 (138)
188 3rkv_A Putative peptidylprolyl 90.9 1.8 6.1E-05 40.5 11.6 98 388-486 12-126 (162)
189 3mkq_A Coatomer beta'-subunit; 89.8 1.5 5.3E-05 52.3 12.4 104 360-484 660-763 (814)
190 1na3_A Designed protein CTPR2; 89.6 2.3 7.9E-05 34.8 10.0 64 387-451 9-72 (91)
191 2if4_A ATFKBP42; FKBP-like, al 89.6 0.39 1.3E-05 52.0 6.3 124 358-486 185-328 (338)
192 1kt0_A FKBP51, 51 kDa FK506-bi 88.4 4 0.00014 45.9 13.9 97 387-486 268-380 (457)
193 2kat_A Uncharacterized protein 88.3 1.8 6.2E-05 37.8 8.8 80 405-486 3-82 (115)
194 3ma5_A Tetratricopeptide repea 87.9 1.8 6E-05 37.4 8.2 64 386-450 6-69 (100)
195 1ihg_A Cyclophilin 40; ppiase 87.5 3.4 0.00012 45.2 12.3 97 389-486 225-336 (370)
196 3q7a_A Farnesyltransferase alp 87.5 13 0.00045 40.5 16.7 227 159-451 63-331 (349)
197 2hr2_A Hypothetical protein; a 87.0 7 0.00024 37.7 12.6 103 360-462 19-147 (159)
198 2l6j_A TPR repeat-containing p 86.9 0.98 3.3E-05 38.7 6.0 64 356-422 8-71 (111)
199 1klx_A Cysteine rich protein B 86.6 7.5 0.00026 35.7 12.4 83 364-452 37-127 (138)
200 3qwp_A SET and MYND domain-con 85.1 3.2 0.00011 46.6 10.5 85 399-483 299-397 (429)
201 3qww_A SET and MYND domain-con 84.2 3.1 0.00011 46.8 9.9 83 401-483 312-408 (433)
202 2uy1_A Cleavage stimulation fa 84.2 14 0.00048 42.1 15.6 118 359-486 293-413 (493)
203 1na3_A Designed protein CTPR2; 84.0 5.5 0.00019 32.4 9.1 60 356-416 13-72 (91)
204 2if4_A ATFKBP42; FKBP-like, al 83.9 3 0.0001 44.9 9.3 96 388-486 180-293 (338)
205 3ly7_A Transcriptional activat 83.9 14 0.00049 40.5 14.7 140 356-501 198-352 (372)
206 2hr2_A Hypothetical protein; a 82.9 10 0.00035 36.5 11.6 96 389-486 13-131 (159)
207 3qwp_A SET and MYND domain-con 82.4 4.2 0.00014 45.6 10.1 93 358-450 293-399 (429)
208 3ma5_A Tetratricopeptide repea 81.2 3.6 0.00012 35.3 7.1 59 356-415 11-69 (100)
209 2uy1_A Cleavage stimulation fa 80.5 8.4 0.00029 43.9 11.8 90 387-484 286-381 (493)
210 3qww_A SET and MYND domain-con 80.4 4.8 0.00016 45.3 9.5 86 365-450 311-410 (433)
211 3mkq_A Coatomer beta'-subunit; 80.1 13 0.00044 44.2 13.8 77 356-447 685-761 (814)
212 3mkq_B Coatomer subunit alpha; 79.8 14 0.00047 36.3 11.3 104 359-483 12-115 (177)
213 3dss_A Geranylgeranyl transfer 78.8 70 0.0024 34.4 17.8 236 192-486 27-304 (331)
214 2kc7_A BFR218_protein; tetratr 78.7 5.5 0.00019 33.3 7.4 56 360-416 8-64 (99)
215 2kc7_A BFR218_protein; tetratr 73.6 9 0.00031 31.9 7.4 53 396-450 9-63 (99)
216 1wy6_A Hypothetical protein ST 72.8 31 0.0011 32.5 10.9 62 356-418 95-156 (172)
217 1k1a_A B-cell lymphoma 3-encod 72.1 15 0.0005 36.3 9.7 31 196-226 11-41 (241)
218 1zu2_A Mitochondrial import re 70.2 7.5 0.00026 37.4 6.5 95 361-460 11-127 (158)
219 3mkq_B Coatomer subunit alpha; 67.7 48 0.0016 32.4 11.8 77 356-447 38-114 (177)
220 1wdy_A 2-5A-dependent ribonucl 67.0 41 0.0014 33.7 12.0 113 356-475 149-268 (285)
221 1wy6_A Hypothetical protein ST 64.3 98 0.0033 29.2 13.5 118 365-486 20-154 (172)
222 1dce_A Protein (RAB geranylger 64.0 1E+02 0.0034 35.6 15.8 132 368-504 89-238 (567)
223 1k1a_A B-cell lymphoma 3-encod 63.0 33 0.0011 33.6 10.1 29 294-322 16-44 (241)
224 3ly7_A Transcriptional activat 61.7 22 0.00074 39.1 8.9 74 384-461 274-347 (372)
225 2ff4_A Probable regulatory pro 61.0 22 0.00076 39.0 9.1 57 391-448 175-231 (388)
226 1pc2_A Mitochondria fission pr 60.1 47 0.0016 31.6 9.9 47 369-416 15-64 (152)
227 3jxi_A Vanilloid receptor-rela 59.9 9 0.00031 38.7 5.2 32 196-227 7-38 (260)
228 2ff4_A Probable regulatory pro 58.6 49 0.0017 36.3 11.3 79 426-505 175-258 (388)
229 3dss_A Geranylgeranyl transfer 57.4 2E+02 0.0069 30.7 19.1 218 165-450 45-303 (331)
230 1pc2_A Mitochondria fission pr 56.5 63 0.0022 30.7 10.1 82 403-486 14-100 (152)
231 3aji_A 26S proteasome non-ATPa 55.8 46 0.0016 32.4 9.7 20 197-216 9-28 (231)
232 3bee_A Putative YFRE protein; 55.6 48 0.0016 28.2 8.5 64 386-451 5-72 (93)
233 2v5f_A Prolyl 4-hydroxylase su 53.1 44 0.0015 28.7 8.0 25 390-414 8-32 (104)
234 4gns_B Protein CSD3, chitin bi 52.6 77 0.0026 38.1 12.3 127 356-484 248-398 (754)
235 4h7y_A Dual specificity protei 49.6 1.4E+02 0.0049 28.5 11.1 108 386-497 12-133 (161)
236 1v54_E Cytochrome C oxidase po 47.8 84 0.0029 28.0 8.5 62 368-430 26-87 (109)
237 3u64_A Protein TP_0956; tetrat 45.6 90 0.0031 33.1 10.0 105 368-484 179-296 (301)
238 3kea_A K1L; tropism, ANK repea 45.0 86 0.0029 32.1 10.0 95 356-459 130-225 (285)
239 4fhn_B Nucleoporin NUP120; pro 42.8 3.2E+02 0.011 34.3 16.4 143 357-507 817-987 (1139)
240 3utm_A Tankyrase-1; tankyrase, 41.4 2.4E+02 0.008 28.9 13.0 21 196-216 26-46 (351)
241 1wdy_A 2-5A-dependent ribonucl 40.7 1.3E+02 0.0045 29.7 10.5 167 294-481 46-240 (285)
242 2v5f_A Prolyl 4-hydroxylase su 39.2 1.6E+02 0.0054 25.0 9.4 60 427-486 10-75 (104)
243 3eu9_A Huntingtin-interacting 36.9 96 0.0033 29.9 8.5 22 295-320 17-38 (240)
244 2y69_E Cytochrome C oxidase su 36.8 1.4E+02 0.0047 28.1 8.5 60 370-430 71-130 (152)
245 1zu2_A Mitochondrial import re 36.7 72 0.0025 30.5 7.1 95 398-497 13-129 (158)
246 3bee_A Putative YFRE protein; 36.4 1.9E+02 0.0066 24.3 9.3 64 421-486 5-72 (93)
247 1dce_A Protein (RAB geranylger 35.2 2.9E+02 0.01 31.6 13.4 129 364-497 41-183 (567)
248 3hra_A Ankyrin repeat family p 34.1 2.7E+02 0.0093 25.8 11.1 114 357-479 74-197 (201)
249 4b93_B Ankyrin repeat domain-c 33.8 3.1E+02 0.011 27.6 12.2 77 396-480 125-205 (269)
250 3eu9_A Huntingtin-interacting 32.4 85 0.0029 30.3 7.2 12 197-208 45-56 (240)
251 1v54_E Cytochrome C oxidase po 31.2 2.1E+02 0.0072 25.4 8.3 50 437-486 25-74 (109)
252 1nzn_A CGI-135 protein, fissio 31.0 1.2E+02 0.004 27.9 7.2 88 360-450 9-102 (126)
253 2d2s_A Exocyst complex compone 29.3 1.9E+02 0.0064 29.4 9.2 89 394-485 25-119 (235)
254 2nsz_A Programmed cell death p 29.1 1E+02 0.0035 28.2 6.5 24 390-413 10-33 (129)
255 2rfa_A Transient receptor pote 28.8 2E+02 0.0068 27.7 9.3 25 428-452 157-181 (232)
256 2f8y_A Notch homolog 1, transl 28.4 2.8E+02 0.0095 26.3 10.2 38 196-237 27-67 (223)
257 1n11_A Ankyrin; clathrin, BAND 27.9 1.9E+02 0.0064 31.2 9.7 194 196-444 16-231 (437)
258 2pnn_A Transient receptor pote 27.8 71 0.0024 32.2 5.8 183 195-482 14-255 (273)
259 1mzb_A Ferric uptake regulatio 27.5 3.5E+02 0.012 24.5 11.3 60 446-506 7-68 (136)
260 2f8y_A Notch homolog 1, transl 26.3 3.2E+02 0.011 25.8 10.2 24 294-321 32-55 (223)
261 2p58_C Putative type III secre 26.0 1.7E+02 0.0057 26.1 6.7 49 432-486 50-98 (116)
262 2rfa_A Transient receptor pote 25.6 2.9E+02 0.0098 26.5 9.8 87 356-447 122-219 (232)
263 3u64_A Protein TP_0956; tetrat 25.2 2.7E+02 0.0091 29.5 9.6 82 404-491 180-272 (301)
264 3t8k_A Uncharacterized protein 24.1 3.2E+02 0.011 25.9 9.6 130 294-453 45-182 (186)
265 4b4t_R RPN7, 26S proteasome re 22.9 4.3E+02 0.015 28.9 11.5 103 356-460 135-246 (429)
266 2uwj_G Type III export protein 22.8 1.6E+02 0.0055 26.1 6.0 49 432-486 49-97 (115)
267 3twr_A Tankyrase-2; ankyrin re 22.6 74 0.0025 29.1 4.4 114 356-480 9-128 (165)
268 2ion_A PDCD4, programmed cell 22.5 97 0.0033 29.3 5.2 24 390-413 12-35 (152)
269 3d9h_A CDNA FLJ77766, highly s 22.5 2.7E+02 0.0093 28.1 9.2 207 195-456 16-249 (285)
270 2d2s_A Exocyst complex compone 21.7 3.1E+02 0.011 27.7 9.1 88 358-448 24-117 (235)
271 1bd8_A P19INK4D CDK4/6 inhibit 21.1 78 0.0027 28.6 4.1 143 295-483 10-156 (156)
272 4fhn_B Nucleoporin NUP120; pro 20.7 3.3E+02 0.011 34.1 11.1 113 360-475 850-989 (1139)
273 3kea_A K1L; tropism, ANK repea 20.1 1.7E+02 0.0057 29.8 6.9 114 356-482 63-183 (285)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.2e-99 Score=887.40 Aligned_cols=476 Identities=49% Similarity=0.875 Sum_probs=450.9
Q ss_pred hhhhhcCCCC--chhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccc
Q 002846 267 TELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRK 344 (874)
Q Consensus 267 ~em~~~~gi~--d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty 344 (874)
+++.++ ++. |...++.+|++ ||+.|++++|+++|++|.+.|+.||.+||
T Consensus 14 ~~~~~k-~~~~spe~~l~~~id~------c~k~G~~~~A~~lf~~M~~~Gv~pd~~ty---------------------- 64 (501)
T 4g26_A 14 RKAKKK-AIQQSPEALLKQKLDM------CSKKGDVLEALRLYDEARRNGVQLSQYHY---------------------- 64 (501)
T ss_dssp -----------CHHHHHHHHHHH------TTTSCCHHHHHHHHHHHHHHTCCCCHHHH----------------------
T ss_pred HHHHHh-cccCCCHHHHHHHHHH------HHhCCCHHHHHHHHHHHHHcCCCCCHhHH----------------------
Confidence 345544 554 66779999999 99999999999999999999999999999
Q ss_pred cccccccCCccchHHHHHHhcCC---------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 002846 345 KDWSIDNQDADEIRLSEDAKKYA---------FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKS 415 (874)
Q Consensus 345 ~~w~i~~~~~~n~lI~~~~k~g~---------~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~ 415 (874)
|+||.+|++.+. +++|+++|++|...|+.||.+|||+||++|++.|++++|.++|++|.+
T Consensus 65 -----------n~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 133 (501)
T 4g26_A 65 -----------NVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKA 133 (501)
T ss_dssp -----------HHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999998764 789999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCChhHH
Q 002846 416 LGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTA 495 (874)
Q Consensus 416 ~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~T~ 495 (874)
.|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||..||++||++|++.|++++|+++|++|++.++.|++.||
T Consensus 134 ~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~ 213 (501)
T 4g26_A 134 FGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTF 213 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHH
T ss_pred cCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888888899
Q ss_pred HHHHHHHhcchHHHhhhhhchhHHHHHHHhhcCCcccccccCCCCCceeEeecccccccccccCcccccccCCHHHHHHH
Q 002846 496 DVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKF 575 (874)
Q Consensus 496 ~~I~~~~~s~~~~~a~~~~~d~~~v~ea~~~~G~~~~~m~~~G~~p~~vt~t~vl~~G~C~~c~~~L~~i~l~~ee~~~l 575 (874)
++|..||.+..+...+...|+...+.+++...|++||+++|.|...|.+..+.+...|.|.+|+..|..++|+++|++.|
T Consensus 214 ~~l~~~F~s~~a~~~g~~~~d~~~~~~~~~~~g~~~~~~~~~~~~~w~v~~t~v~~~G~C~~c~~~L~~i~l~~~e~~~l 293 (501)
T 4g26_A 214 DMIEEWFKSEVATKTGVKKWDVKKIRDAVVSGGGGWHGQGWLGTGKWNVKRTEMDENGVCKCCKEKLVCIDINPVETETF 293 (501)
T ss_dssp HHHHHHHHSHHHHTCCBSCCCHHHHHHHHHHHTSSCCCSCCCBCSCEEEEEECBCTTSBBTTTCCBCCCCCCCHHHHHHH
T ss_pred HHHHHHHhcCcchhhhhhhhhhhhhhhhHhccCcccccccccccCceeEEeeecccCCCccchhhhhccccCCHHHHHHH
Confidence 99999999988888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHhhcCCcchhhhhhhhhccccCCCChhhHHHHHHHHHHhCCCCCceEEEeccccccC
Q 002846 576 AESVASIAIKRERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITG 655 (874)
Q Consensus 576 ~~~I~~~a~~~~~~~~~~~F~~~l~~~~pyDiVIDGaNv~~~~~~~f~~~~l~~vv~~l~~~~~~~~~~lvvl~~~~~~~ 655 (874)
.+.|.++++.++++++|+.|++|+++++|||+||||+|||||++++|++.||+.||+.+++..+.+++||||||++|+.+
T Consensus 294 ~~~i~~~~~~~~~~~~~~~F~~~l~~~~p~d~vIDG~NV~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lv~l~~~~~~~ 373 (501)
T 4g26_A 294 AASLTRLACEREVKANFNQFQEWLERHGPFDAVIDGANMGLVNQRSFSFFQLNNTVQRCQQISPSKRLPLVILHKSRVNG 373 (501)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHTSCCCSEEEEHHHHHHTTCSSCCHHHHHHHHHHHHHHSTTCCCCEEEEEHHHHTS
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhcCCchhhhccchhhccccccccHHHHHHHHHHHHHHhhccCCcEEEeehhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999998889999999999999998
Q ss_pred CCCCChhhHHHHHHHHhcCceEecCCCCCccHHHHHHHHhcCceEEeCcccccccccccCCchHHhHhhcCeeEEEecCC
Q 002846 656 HKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRFSFSDA 735 (874)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~l~~tp~~s~DD~y~LyAa~~~~~~~vsnD~mRdH~~~ll~~~~F~rW~~~hqv~~~~~~~ 735 (874)
..+..|.+++++++|++++.+|.||++||||||||||||+.+|+|||||+||||+|+|+++++|+|||++|||+|++++.
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~t~~~s~DD~~~lyAal~~~~~~vsnD~mRdH~f~l~~~~~F~rW~~~hq~~~~~~~~ 453 (501)
T 4g26_A 374 GPATYPKNRALLEKWKNAGALYATPPGSNDDWYWLYAAVSCKCLLVTNDEMRDHLFQLLGNSFFPRWKEKHQVRISVTRE 453 (501)
T ss_dssp GGGSSHHHHHHHHHHHHTTCEEEECTTCCHHHHHHHHHHHHTCEEECCCCCCSGGGGGGTTTHHHHHHHHHEEEEEEETT
T ss_pred cccCCHHHHHHHHHHHhcCeEEeCCCCCCchHHHHHHHHccCCEEEeccccccchhccCCcHHHHHHHhcCeEEEEecCC
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred -CCccccCCCCceeeEecCCCceEecccCCCCCCCCCCceEEEecCCCc
Q 002846 736 -GPEFYMPPPCSVVIQESEKGNWHIPIASKQDYDDEERRWLCVTRANSH 783 (874)
Q Consensus 736 -~~~~~~p~~y~~~iQ~~~~~~WHiP~~~~~~~e~~~~~WlC~~~~~~~ 783 (874)
+++|++|+||+++||++++++|||||.+++++|+| ++|||++|.+.+
T Consensus 454 ~~~~~~~p~~~~~~~q~~~~~~WHiP~~~~~~~~~~-~~WlC~~r~~~~ 501 (501)
T 4g26_A 454 DGLKLNMPPPYSIVIQESEDGTWHVPMSVEDDLQTS-RQWLCAKRSKTP 501 (501)
T ss_dssp TEEEEECCCSSCCSCEECTTSCEEEEBCCSCTTTSC-CCEEEEEECC--
T ss_pred CCceeccCCCCceeeeecCCCceEecccCCCCCCCC-CeeEeeccCCCC
Confidence 69999999999999999888999999999999995 999999998653
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.98 E-value=3.5e-32 Score=317.58 Aligned_cols=216 Identities=23% Similarity=0.277 Sum_probs=186.6
Q ss_pred HHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCccc
Q 002846 168 GQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPA 247 (874)
Q Consensus 168 ~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~ 247 (874)
.+..+..+|..++ ....|+ ..++.+|++|||.|++++|+++|++|.+.|++||.+|||+||++|+.++
T Consensus 8 ~~e~L~~~~~~k~----~~~spe-~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~------- 75 (501)
T 4g26_A 8 PSENLSRKAKKKA----IQQSPE-ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAE------- 75 (501)
T ss_dssp --------------------CHH-HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCC-------
T ss_pred hHHHHHHHHHHhc----ccCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCC-------
Confidence 4555666663322 223344 6789999999999999999999999999999999999999999999432
Q ss_pred CCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccH
Q 002846 248 KSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQL 327 (874)
Q Consensus 248 k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~ 327 (874)
.. . . .++.+.++.|.++|++|...|+.||.+||
T Consensus 76 ---~~------------------~---------------~------~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty----- 108 (501)
T 4g26_A 76 ---AA------------------T---------------E------SSPNPGLSRGFDIFKQMIVDKVVPNEATF----- 108 (501)
T ss_dssp ---CC------------------S---------------S------SSCCHHHHHHHHHHHHHHHTTCCCCHHHH-----
T ss_pred ---ch------------------h---------------h------hhhcchHHHHHHHHHHHHHhCCCCCHHHH-----
Confidence 10 0 0 45567789999999999999999999999
Q ss_pred HHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 002846 328 LDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAF 407 (874)
Q Consensus 328 ~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~ 407 (874)
|+||.+|++.|++++|.++|++|.+.|+.||..|||+||.+||+.|++++|.
T Consensus 109 ----------------------------n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~ 160 (501)
T 4g26_A 109 ----------------------------TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAY 160 (501)
T ss_dssp ----------------------------HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ----------------------------HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 002846 408 DMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA 470 (874)
Q Consensus 408 ~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~ 470 (874)
++|++|.+.|+.||..||++||.+||+.|++++|+++|++|.+.|+.|+..||++|+..|+..
T Consensus 161 ~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 161 EVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999864
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.87 E-value=1.8e-20 Score=219.87 Aligned_cols=289 Identities=9% Similarity=-0.049 Sum_probs=211.5
Q ss_pred cchhhhhhhchHHHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 002846 147 SSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ 226 (874)
Q Consensus 147 ~~~~~~~~l~~~~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~ 226 (874)
....++..+. .+.+.++.++|..+|++|.. ..|+..+|..+..+|.+.|++++|+.+|+.+.. ..++.
T Consensus 83 ~~~~~~~~~~--~~~~~g~~~~A~~~~~~~~~--------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~ 150 (597)
T 2xpi_A 83 REDYLRLWRH--DALMQQQYKCAAFVGEKVLD--------ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSS 150 (597)
T ss_dssp HHHHHHHHHH--HHHHTTCHHHHHHHHHHHHH--------HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCH
T ss_pred HHHHHHHHHH--HHHHccCchHHHHHHHHHHh--------hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccch
Confidence 3445566655 67788999999999999953 345668999999999999999999999999864 37899
Q ss_pred HHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcC--------------CCC-chhhhHhhhcCcccC
Q 002846 227 YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSR--------------DMD-NNGQLDYGSSPMIDK 291 (874)
Q Consensus 227 ~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~--------------gi~-d~vtyn~LI~~~~~~ 291 (874)
.+++.++.+|+ +.|++++|..+|+ ++.... +.+ +..+|+.++.+
T Consensus 151 ~~~~~l~~~~~----------~~g~~~~A~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---- 209 (597)
T 2xpi_A 151 ACRYLAAFCLV----------KLYDWQGALNLLG-------ETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQV---- 209 (597)
T ss_dssp HHHHHHHHHHH----------HTTCHHHHHHHHC-------SSCTTC----------CCCSSCCHHHHHHHHHHHH----
T ss_pred hHHHHHHHHHH----------HHhhHHHHHHHHh-------ccCCccccccccccccccccccchhHHHHHHHHHH----
Confidence 99999999999 8999999999995 222211 223 57889999999
Q ss_pred hhhhhcCChHHHHHHHHHHHHcCCCCCeee----------------------------------------------ec-c
Q 002846 292 LESNSSYRFDDLDSTFNEKENLGQFSNGHM----------------------------------------------KL-N 324 (874)
Q Consensus 292 ~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~t----------------------------------------------y~-~ 324 (874)
|++.|++++|.++|++|...+ |+... |. .
T Consensus 210 --~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (597)
T 2xpi_A 210 --YTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHE 285 (597)
T ss_dssp --HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTH
T ss_pred --HHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCc
Confidence 999999999999999998865 33211 11 6
Q ss_pred ccHHHHHHhhhcC---CCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 002846 325 SQLLDGRSNLERG---PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG 401 (874)
Q Consensus 325 g~~~eA~~l~~~m---~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G 401 (874)
|++++|..+|+++ .++..+| +.++..|.+.|++++|.++|++|...+ +.+..+|+.++.+|.+.|
T Consensus 286 g~~~~A~~~~~~~~~~~~~~~~~-----------~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 353 (597)
T 2xpi_A 286 DELRRAEDYLSSINGLEKSSDLL-----------LCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESG 353 (597)
T ss_dssp HHHHHHHHHHHTSTTGGGCHHHH-----------HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHhhcCCchHHHH-----------HHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhC
Confidence 7888899999988 3678888 889999999999999999999888654 225555666666666666
Q ss_pred ChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHH
Q 002846 402 DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLH 481 (874)
Q Consensus 402 ~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~ 481 (874)
++++|.+++++|.+. ...+..+|+.+..+|++.|++++|.++|++|.+.. ..+..+|+.|+.+|++.|++++|.++|+
T Consensus 354 ~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 431 (597)
T 2xpi_A 354 EKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYT 431 (597)
T ss_dssp CHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666666666666543 22345566666666666666666666666665432 1235566666666666666666666666
Q ss_pred HHHhc
Q 002846 482 KLRTS 486 (874)
Q Consensus 482 ~M~~~ 486 (874)
+|...
T Consensus 432 ~~~~~ 436 (597)
T 2xpi_A 432 TAARL 436 (597)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 66554
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.86 E-value=6.8e-20 Score=214.95 Aligned_cols=308 Identities=12% Similarity=-0.025 Sum_probs=183.8
Q ss_pred cchhhhhhhchHHHHhcCChhHHHHHHHHHhhCC---------CCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002846 147 SSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKG---------SKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKA 217 (874)
Q Consensus 147 ~~~~~~~~l~~~~~~k~~~~~~A~~vf~eM~~~g---------~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M 217 (874)
...+++.... .+.+.++.++|.++|+++.... ...+.+..++..+|+.++.+|.+.|++++|+++|++|
T Consensus 149 ~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 226 (597)
T 2xpi_A 149 SSACRYLAAF--CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEA 226 (597)
T ss_dssp CHHHHHHHHH--HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chhHHHHHHH--HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445555554 7788999999999999642111 0011244567899999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhc----------------------------ccCCCcccCCCCHHHHHHHHhhcccCchhh
Q 002846 218 QREGIKLGQYHYNVLLYLCSSA----------------------------AVGVVKPAKSGSGMRTLDTFEVSTMNSTEL 269 (874)
Q Consensus 218 ~~~Gi~pd~~tyn~LL~a~~~~----------------------------~~~~~~~~k~G~~~~A~~vf~v~~~~s~em 269 (874)
.+.+.. +...+..+...+... ...+..+.+.|++++|..+|. ++
T Consensus 227 ~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~-------~~ 298 (597)
T 2xpi_A 227 LMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS-------SI 298 (597)
T ss_dssp HHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH-------TS
T ss_pred HHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH-------Hh
Confidence 875421 223333222111000 000112336677777777774 33
Q ss_pred hhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeee---------------------------
Q 002846 270 GDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMK--------------------------- 322 (874)
Q Consensus 270 ~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty--------------------------- 322 (874)
.+. -.+..+|+.++.+ |++.|++++|.++|++|...+-. +..++
T Consensus 299 ~~~--~~~~~~~~~l~~~------~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 369 (597)
T 2xpi_A 299 NGL--EKSSDLLLCKADT------LFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH 369 (597)
T ss_dssp TTG--GGCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred hcC--CchHHHHHHHHHH------HHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Confidence 332 1256667777777 77777777777777777655411 22222
Q ss_pred -------c--------cccHHHHHHhhhcC---CC-CcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 002846 323 -------L--------NSQLLDGRSNLERG---PD-DQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEV 383 (874)
Q Consensus 323 -------~--------~g~~~eA~~l~~~m---~p-d~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv 383 (874)
+ .|++++|..+|+++ .| +..+| +.++..|++.|++++|.++|++|...+
T Consensus 370 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----------~~l~~~~~~~g~~~~A~~~~~~~~~~~- 437 (597)
T 2xpi_A 370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAW-----------IGFAHSFAIEGEHDQAISAYTTAARLF- 437 (597)
T ss_dssp TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH-----------HHHHHHHHHHTCHHHHHHHHHHHHHTT-
T ss_pred cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHH-----------HHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 2 55566666666555 22 34455 566666666666666666666665543
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHc----CCCCC--H
Q 002846 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH----GVYPE--E 457 (874)
Q Consensus 384 ~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~----Gv~Pd--~ 457 (874)
+.+..+|+.++.+|.+.|++++|.++|++|.+.. ..+..+|+.+...|++.|++++|.++|++|.+. +..|+ .
T Consensus 438 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~ 516 (597)
T 2xpi_A 438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWA 516 (597)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGH
T ss_pred ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHH
Confidence 2355566666666666666666666666665542 234556666666666666666666666666554 55555 5
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 458 PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 458 ~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
.+|..|..+|.+.|++++|..+|+++.+.
T Consensus 517 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 517 ATWANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 56666666666666666666666666554
No 5
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=99.80 E-value=3.9e-20 Score=188.24 Aligned_cols=124 Identities=19% Similarity=0.207 Sum_probs=104.6
Q ss_pred CcchhhhhhhhhccccC--CCChhhHHHHHHHHHHhCCCCCc-eEEEeccccccC-CCCCChhhHHHHHHHHhcCceEec
Q 002846 604 PFEAVVDAANVGLYSQR--NFKPARVNAVVNGIRQKFPSKKW-PLIVLHNRRITG-HKMDQPVNRALIEKWKNADALYAT 679 (874)
Q Consensus 604 pyDiVIDGaNv~~~~~~--~f~~~~l~~vv~~l~~~~~~~~~-~lvvl~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~t 679 (874)
.--|||||+|||++.++ .|+..+|..+|++|.+ .|+. ++|+++..+... +......+++++++|.+.+.|+.|
T Consensus 24 lR~IVIDGsNVA~~~g~~~~Fs~rgI~~aV~yF~~---RGh~~V~VfvP~~r~~~~~~~~~~~d~~~L~~L~k~g~L~~T 100 (223)
T 3v33_A 24 LRPVVIDGSNVAMSHGNKEVFSCRGILLAVNWFLE---RGHTDITVFVPSWRKEQPRPDVPITDQHILRELEKKKILVFT 100 (223)
T ss_dssp BCCEEEEHHHHHHHSSSTTSEEHHHHHHHHHHHHT---TTCCCEEEEEEGGGGSCCCTTSCEESTHHHHHHHHTTCEEEE
T ss_pred CCeEEEeCHHHHhhhCCCCCcCHHHHHHHHHHHHH---cCCCceEEEechhhhccccccCCCCcHHHHHHHHHCCCEEEC
Confidence 34689999999998765 6888999999999998 6766 557776655432 223346678999999999999999
Q ss_pred CCC--------CCccHHHHHHHHhcCceEEeCcccccccccccCCchHHhHhhcCeeEEEec
Q 002846 680 PTG--------SNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRFSFS 733 (874)
Q Consensus 680 p~~--------s~DD~y~LyAa~~~~~~~vsnD~mRdH~~~ll~~~~F~rW~~~hqv~~~~~ 733 (874)
|.+ ++||+|||++|...+++|||||+||||.. ....|.+|.+.|+|.|+|.
T Consensus 101 Ps~~v~G~r~~sydD~~iL~~A~~~~g~IVSND~yRD~~~---e~p~~k~~Ie~rlI~ytFv 159 (223)
T 3v33_A 101 PSRRVGGKRVVCYDDRFIVKLAYESDGIVVSNDTYRDLQG---ERQEWKRFIEERLLMYSFV 159 (223)
T ss_dssp CEEEETTEEEECCHHHHHHHHHHHTTCEEECSCCCHHHHT---TCHHHHHHHHHHEECCEEE
T ss_pred CCCCcCCccccccchHHHHHHHHHcCCEEEeCccHHHHHh---hCHHHHHHHHhCeeeEEEE
Confidence 998 89999999999999999999999999985 3456899999999999986
No 6
>3v32_B Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens} PDB: 3v34_A
Probab=99.78 E-value=1.5e-19 Score=180.18 Aligned_cols=124 Identities=19% Similarity=0.214 Sum_probs=104.0
Q ss_pred CcchhhhhhhhhccccC--CCChhhHHHHHHHHHHhCCCCCc-eEEEeccccccC-CCCCChhhHHHHHHHHhcCceEec
Q 002846 604 PFEAVVDAANVGLYSQR--NFKPARVNAVVNGIRQKFPSKKW-PLIVLHNRRITG-HKMDQPVNRALIEKWKNADALYAT 679 (874)
Q Consensus 604 pyDiVIDGaNv~~~~~~--~f~~~~l~~vv~~l~~~~~~~~~-~lvvl~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~t 679 (874)
.--+||||+|||++.++ .|+..+|..+|++|.+ .|+. ++|+++..+... +......+++++++|.+.+.++.|
T Consensus 24 lR~IVIDGsNVA~~~g~~~~Fs~rgI~~aV~yf~~---rGh~~v~VfvP~~r~~~~~~~~~~~d~~~L~~L~~~g~l~~T 100 (185)
T 3v32_B 24 LRPVVIDGSNVAMSHGNKEVFSCRGILLAVNWFLE---RGHTDITVFVPSWRKEQPRPDVPITDQHILRELEKKKILVFT 100 (185)
T ss_dssp BCCEEEEHHHHHHHHTTTTSEEHHHHHHHHHHHHH---TTCCCEEEEEEGGGGSCCCTTSCEECTHHHHHHHHTTCEEEE
T ss_pred CCeEEEeCHHHHhhhCCCCCcCHHHHHHHHHHHHH---cCCCceEEEechHhhhcccccCCCCCHHHHHHHHHCCCEEEC
Confidence 45689999999998765 6899999999999998 6766 556776655432 233346788999999999999999
Q ss_pred CCC--------CCccHHHHHHHHhcCceEEeCcccccccccccCCchHHhHhhcCeeEEEec
Q 002846 680 PTG--------SNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQVRFSFS 733 (874)
Q Consensus 680 p~~--------s~DD~y~LyAa~~~~~~~vsnD~mRdH~~~ll~~~~F~rW~~~hqv~~~~~ 733 (874)
|.+ ++||+|||++|...+++|||||+||||..+ ...+.+|.+.|+|.|+|.
T Consensus 101 Ps~~~~g~~~~~ydD~~il~~A~~~~g~IVSND~~rD~~~~---~p~~k~~Ie~rli~ytFv 159 (185)
T 3v32_B 101 PSRRVGGKRVVCYDDRFIVKLAYESDGIVVSNDTYRDLQGE---RQEWKRFIEERLLMYSFV 159 (185)
T ss_dssp CCCC-------CCHHHHHHHHHHHTTCEEECSCCCHHHHHH---CHHHHHHHHHHEECCEEE
T ss_pred CCcccCCCcccCccHHHHHHHHHHcCCEEEeCccHHHHHhh---CHHHHHHHHhCcceeEEE
Confidence 999 899999999999999999999999999862 345777789999999986
No 7
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.77 E-value=2.1e-19 Score=217.25 Aligned_cols=116 Identities=15% Similarity=0.008 Sum_probs=110.4
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCL---DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~---~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~ 432 (874)
|+||++||+.|++++|.++|++|.+ .|+.||++|||+||++||+.|++++|.++|++|.+.|+.||++|||+||.+|
T Consensus 131 naLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~gl 210 (1134)
T 3spa_A 131 LAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCM 210 (1134)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 9999999999999999999988874 5899999999999999999999999999999999999999999999999999
Q ss_pred HhCCCh-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 002846 433 CNNGDV-DKACSVEEHMLEHGVYPEEPELEALLRVSVEAG 471 (874)
Q Consensus 433 ~k~G~~-~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G 471 (874)
|+.|+. ++|.++|++|.+.|+.||..+|+++|.++.+.+
T Consensus 211 cK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~ 250 (1134)
T 3spa_A 211 GRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250 (1134)
T ss_dssp HHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH
Confidence 999985 789999999999999999999999998777654
No 8
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.76 E-value=1.1e-19 Score=219.65 Aligned_cols=150 Identities=9% Similarity=-0.096 Sum_probs=130.9
Q ss_pred hhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHH---cCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCc
Q 002846 278 NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKEN---LGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDA 354 (874)
Q Consensus 278 ~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~---~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~ 354 (874)
.+|||+||+| ||+.|++++|.++|.+|.+ +|+.||++||
T Consensus 127 ~~TynaLIdg------lcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTY-------------------------------- 168 (1134)
T 3spa_A 127 QQRLLAFFKC------CLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMY-------------------------------- 168 (1134)
T ss_dssp HHHHHHHHHH------HHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHH--------------------------------
T ss_pred HHHHHHHHHH------HHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHH--------------------------------
Confidence 4789999999 9999999999999988864 5899999999
Q ss_pred cchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 002846 355 DEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDG-DMAFDMVKRMKSLGINPRLRSYGPALSVFC 433 (874)
Q Consensus 355 ~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~-d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~ 433 (874)
|+||+|||+.|++++|.++|++|.+.|+.||++|||+||+++|+.|+. ++|.++|++|.+.|+.||.++|+++|.++.
T Consensus 169 -NtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~e 247 (1134)
T 3spa_A 169 -NAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED 247 (1134)
T ss_dssp -HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHH
T ss_pred -HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhh
Confidence 999999999999999999999999999999999999999999999985 789999999999999999999999998887
Q ss_pred hCCChhHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHhcC
Q 002846 434 NNGDVDKACSVEEHMLEHGVYPE------EPELEALLRVSVEAG 471 (874)
Q Consensus 434 k~G~~~~A~~l~~eM~~~Gv~Pd------~~ty~~LI~~~~~~G 471 (874)
+.+-++.+. .+ ..++.|+ ..|...|.+.|.+.+
T Consensus 248 R~~vL~~Vr----kv-~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 248 RATVLKAVH----KV-KPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHHHG----GG-CCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHHHHH----Hh-CcccCCCCCCcccccchHHHHHHHccCC
Confidence 765443333 33 3456665 566677888887766
No 9
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.55 E-value=1.4e-12 Score=144.59 Aligned_cols=279 Identities=11% Similarity=-0.031 Sum_probs=207.7
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHH
Q 002846 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYH-YNVLLYLCS 237 (874)
Q Consensus 159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~t-yn~LL~a~~ 237 (874)
...+.++.++|...|+.+.... +.+...|..+..++.+.|++++|+..|+++.+. .|+... +..+-..+.
T Consensus 76 ~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~ 146 (388)
T 1w3b_A 76 VYKERGQLQEAIEHYRHALRLK-------PDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLK 146 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcC-------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHH
Confidence 4556778888888888875421 113356788888888888888888888888764 354443 344444444
Q ss_pred hcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCC
Q 002846 238 SAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS 317 (874)
Q Consensus 238 ~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~P 317 (874)
..|+.++|...|. ++... ...+..+|+.+... +...|++++|...|+++.... |
T Consensus 147 ----------~~g~~~~A~~~~~-------~al~~-~p~~~~~~~~l~~~------~~~~g~~~~A~~~~~~al~~~--p 200 (388)
T 1w3b_A 147 ----------ALGRLEEAKACYL-------KAIET-QPNFAVAWSNLGCV------FNAQGEIWLAIHHFEKAVTLD--P 200 (388)
T ss_dssp ----------TTSCHHHHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHTTTCHHHHHHHHHHHHHHC--T
T ss_pred ----------HccCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHcCCHHHHHHHHHHHHhcC--C
Confidence 6788888888884 44443 22356678888888 888999999999999888753 4
Q ss_pred Cee-eec--------cccHHHHHHhhhcC---CCC-cccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 002846 318 NGH-MKL--------NSQLLDGRSNLERG---PDD-QSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVP 384 (874)
Q Consensus 318 d~~-ty~--------~g~~~eA~~l~~~m---~pd-~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~ 384 (874)
+.. .|. .|+.++|...+.+. .|+ ..+| ..+...+.+.|++++|.+.|+++.... +
T Consensus 201 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-----------~~l~~~~~~~g~~~~A~~~~~~al~~~-p 268 (388)
T 1w3b_A 201 NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH-----------GNLACVYYEQGLIDLAIDTYRRAIELQ-P 268 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH-----------HHHHHHHHHTTCHHHHHHHHHHHHHTC-S
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHH-----------HHHHHHHHHcCCHHHHHHHHHHHHhhC-C
Confidence 432 222 67778888887766 454 4556 778888889999999999999888764 2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 002846 385 MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464 (874)
Q Consensus 385 Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI 464 (874)
.+..+|..+...+.+.|++++|..+|+++.+. .+.+..+|+.+...+.+.|++++|..+++.+.+.. ..+...|..|.
T Consensus 269 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 346 (388)
T 1w3b_A 269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLA 346 (388)
T ss_dssp SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 35678888999999999999999999988876 34567788888888999999999999998887642 33577888888
Q ss_pred HHHHhcCCchHHHHHHHHHHhc
Q 002846 465 RVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 465 ~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
..|.+.|++++|...|+++.+.
T Consensus 347 ~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 347 SVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHHHhh
Confidence 8999999999999999888865
No 10
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.53 E-value=1.3e-11 Score=136.88 Aligned_cols=296 Identities=10% Similarity=-0.050 Sum_probs=234.0
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 002846 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (874)
Q Consensus 160 ~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~ 239 (874)
..+.++.++|.+.++.+.... +.+...+..+-..+.+.|++++|..+++...+.. +.+..+|..+-.++.
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~-- 78 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQE-------PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYK-- 78 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH--
T ss_pred HHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHH--
Confidence 446789999999999985431 1233566666778889999999999999888643 567889999999999
Q ss_pred ccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCe
Q 002846 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG 319 (874)
Q Consensus 240 ~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~ 319 (874)
+.|++++|...|. ++... .-.+...|..+..+ +.+.|++++|...|.++... .|+.
T Consensus 79 --------~~g~~~~A~~~~~-------~al~~-~p~~~~~~~~l~~~------~~~~g~~~~A~~~~~~al~~--~p~~ 134 (388)
T 1w3b_A 79 --------ERGQLQEAIEHYR-------HALRL-KPDFIDGYINLAAA------LVAAGDMEGAVQAYVSALQY--NPDL 134 (388)
T ss_dssp --------HHTCHHHHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHHHSCSSHHHHHHHHHHHH--CTTC
T ss_pred --------HCCCHHHHHHHHH-------HHHHc-CcchHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHh--CCCc
Confidence 7899999999995 44432 22245569999999 99999999999999999876 4666
Q ss_pred eeec---------cccHHHHHHhhhcC---CCC-cccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 002846 320 HMKL---------NSQLLDGRSNLERG---PDD-QSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN 386 (874)
Q Consensus 320 ~ty~---------~g~~~eA~~l~~~m---~pd-~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd 386 (874)
.... .|+.++|...|.++ .|+ ..+| +.+...+.+.|++++|.+.|+++.... +-+
T Consensus 135 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-----------~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~ 202 (388)
T 1w3b_A 135 YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAW-----------SNLGCVFNAQGEIWLAIHHFEKAVTLD-PNF 202 (388)
T ss_dssp THHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHH-----------HHHHHHHHTTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH-----------HHHHHHHHHcCCHHHHHHHHHHHHhcC-CCc
Confidence 5433 68999999999887 554 4566 788888999999999999999998754 335
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 002846 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALL 464 (874)
Q Consensus 387 ~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~P-d~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~P-d~~ty~~LI 464 (874)
...|..+-..+...|++++|...+++.... .| +..+|..+...|++.|++++|.+.|+.+.+.. | +...|..+.
T Consensus 203 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~ 278 (388)
T 1w3b_A 203 LDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLA 278 (388)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHH
Confidence 778899999999999999999999988765 35 46788889999999999999999999998854 4 467889999
Q ss_pred HHHHhcCCchHHHHHHHHHHhcCCCCC-hhHHHH-HHHHHhcchH
Q 002846 465 RVSVEAGKGDRVYYLLHKLRTSVRKVS-PSTADV-IAKWFNSKEA 507 (874)
Q Consensus 465 ~~~~~~G~~d~A~~ll~~M~~~~~~~s-p~T~~~-I~~~~~s~~~ 507 (874)
..+.+.|++++|..+|+++... .|. +.++.. ...++..+..
T Consensus 279 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~ 321 (388)
T 1w3b_A 279 NALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNI 321 (388)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCH
Confidence 9999999999999999999876 332 335544 3444444443
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.48 E-value=1.4e-11 Score=138.72 Aligned_cols=285 Identities=10% Similarity=-0.045 Sum_probs=222.9
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 002846 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (874)
Q Consensus 159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (874)
...+.++.++|..+|+.+... .+.+...|..+...|.+.|++++|+..|+++.+.+ +.+...|..+..+|.
T Consensus 35 ~~~~~g~~~~A~~~~~~~l~~-------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~- 105 (450)
T 2y4t_A 35 KLLAAGQLADALSQFHAAVDG-------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLL- 105 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-
T ss_pred HHHHCCCHHHHHHHHHHHHHh-------CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH-
Confidence 566889999999999999653 12356899999999999999999999999999764 335778888888888
Q ss_pred cccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCch---hhhHhhhcC------cccChhhhhcCChHHHHHHHHH
Q 002846 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNN---GQLDYGSSP------MIDKLESNSSYRFDDLDSTFNE 309 (874)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~---vtyn~LI~~------~~~~~~~~~~g~~e~A~~lf~e 309 (874)
+.|++++|...|. ++... ...+. ..|..++.. ......+.+.|++++|..+|++
T Consensus 106 ---------~~g~~~~A~~~~~-------~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 168 (450)
T 2y4t_A 106 ---------KQGKLDEAEDDFK-------KVLKS-NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDK 168 (450)
T ss_dssp ---------HTTCHHHHHHHHH-------HHHTS-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ---------HcCCHHHHHHHHH-------HHHhc-CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8899999999995 44442 22233 445444221 0001127789999999999999
Q ss_pred HHHcCCCCC-eeeec--------cccHHHHHHhhhcC----CCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHH
Q 002846 310 KENLGQFSN-GHMKL--------NSQLLDGRSNLERG----PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYE 376 (874)
Q Consensus 310 M~~~Gi~Pd-~~ty~--------~g~~~eA~~l~~~m----~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~ 376 (874)
+.... |+ ...+. .|+.++|...|.++ ..+..+| ..+...|.+.|++++|.++|+
T Consensus 169 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----------~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 169 ILEVC--VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAF-----------YKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHH-----------HHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhC--CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH-----------HHHHHHHHHcCCHHHHHHHHH
Confidence 98753 33 22232 88999999999987 4456777 888899999999999999999
Q ss_pred HHHHCCCCCCHHHHHHH------------HHHHHhcCChhHHHHHHHHHHHCCCCCC-----cccHHHHHHHHHhCCChh
Q 002846 377 KMCLDEVPMNEASLTAV------------GRMAMSMGDGDMAFDMVKRMKSLGINPR-----LRSYGPALSVFCNNGDVD 439 (874)
Q Consensus 377 ~M~~~Gv~Pd~~tyn~L------------I~~~~~~G~~d~A~~l~~~M~~~Gi~Pd-----~~tYn~LI~a~~k~G~~~ 439 (874)
++.... +.+...+..+ ...|...|++++|..+|+++.+. .|+ ...|..+...+.+.|+++
T Consensus 236 ~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~ 312 (450)
T 2y4t_A 236 ECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPV 312 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHH
Confidence 998643 2244445544 78899999999999999999874 455 347888889999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 440 KACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 440 ~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
+|...++.+.... ..+...|..+..+|...|++++|...|++..+.
T Consensus 313 ~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 313 EAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 9999999988753 236789999999999999999999999999875
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.45 E-value=1e-11 Score=139.64 Aligned_cols=276 Identities=10% Similarity=0.038 Sum_probs=220.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhh
Q 002846 190 EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTEL 269 (874)
Q Consensus 190 d~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em 269 (874)
+...|..+...+.+.|++++|+.+|+++.+.. +.+...|..+..++. ..|+.++|...|. ++
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~----------~~g~~~~A~~~~~-------~a 86 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFL----------AMGKSKAALPDLT-------KV 86 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----------HTTCHHHHHHHHH-------HH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH----------HCCCHHHHHHHHH-------HH
Confidence 45789999999999999999999999998652 446888999988888 7899999999995 55
Q ss_pred hhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCee------------------------eeccc
Q 002846 270 GDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH------------------------MKLNS 325 (874)
Q Consensus 270 ~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~------------------------ty~~g 325 (874)
.+. +-.+...|..+... |.+.|++++|...|+++... .|+.. -+..|
T Consensus 87 l~~-~p~~~~~~~~l~~~------~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 157 (450)
T 2y4t_A 87 IQL-KMDFTAARLQRGHL------LLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSG 157 (450)
T ss_dssp HHH-CTTCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred Hhc-CCCcHHHHHHHHHH------HHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 443 33366778899999 99999999999999999875 35433 11178
Q ss_pred cHHHHHHhhhcC---CC-CcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 002846 326 QLLDGRSNLERG---PD-DQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG 401 (874)
Q Consensus 326 ~~~eA~~l~~~m---~p-d~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G 401 (874)
+..+|...|.++ .| +...+ ..+...|.+.|++++|.++|+++.... +.+..+|..+...|...|
T Consensus 158 ~~~~A~~~~~~~~~~~~~~~~~~-----------~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 225 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVCVWDAELR-----------ELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLG 225 (450)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHH-----------HHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhCCCChHHH-----------HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 999999999987 44 45566 888899999999999999999998753 457899999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCccc-HHHH------------HHHHHhCCChhHHHHHHHHHHHcCCCCC-----HHHHHHH
Q 002846 402 DGDMAFDMVKRMKSLGINPRLRS-YGPA------------LSVFCNNGDVDKACSVEEHMLEHGVYPE-----EPELEAL 463 (874)
Q Consensus 402 ~~d~A~~l~~~M~~~Gi~Pd~~t-Yn~L------------I~a~~k~G~~~~A~~l~~eM~~~Gv~Pd-----~~ty~~L 463 (874)
++++|..+|+++... .|+... +..+ ...|.+.|++++|..+|+.+.+. .|+ ...|..+
T Consensus 226 ~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l 301 (450)
T 2y4t_A 226 DHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERI 301 (450)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHH
Confidence 999999999999865 455443 3333 68889999999999999999884 365 4578889
Q ss_pred HHHHHhcCCchHHHHHHHHHHhcCCCC-ChhHHHH-HHHHHhcchHHHh
Q 002846 464 LRVSVEAGKGDRVYYLLHKLRTSVRKV-SPSTADV-IAKWFNSKEAARL 510 (874)
Q Consensus 464 I~~~~~~G~~d~A~~ll~~M~~~~~~~-sp~T~~~-I~~~~~s~~~~~a 510 (874)
...+.+.|++++|..+++++... .+ .+..+.. ...+...+...+|
T Consensus 302 ~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A 348 (450)
T 2y4t_A 302 CHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEA 348 (450)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHH
Confidence 99999999999999999998876 33 3345544 4444445544333
No 13
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.22 E-value=1.9e-09 Score=122.71 Aligned_cols=285 Identities=10% Similarity=0.004 Sum_probs=214.1
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 002846 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (874)
Q Consensus 159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (874)
...+.++..+|...|+++.... |+...|..+..+|.+.|++++|+..|+++.+.+ +-+...|..+..++.
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~- 84 (514)
T 2gw1_A 15 QFFRNKKYDDAIKYYNWALELK--------EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE- 84 (514)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH-
T ss_pred HHHHhccHHHHHHHHHHHHhcC--------ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH-
Confidence 4557789999999999996642 567899999999999999999999999999764 345678888888888
Q ss_pred cccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCc-----------------------------------------
Q 002846 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDN----------------------------------------- 277 (874)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d----------------------------------------- 277 (874)
+.|+.++|...|. .+.......+
T Consensus 85 ---------~~g~~~~A~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 148 (514)
T 2gw1_A 85 ---------GLGKFADAMFDLS-------VLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPA 148 (514)
T ss_dssp ---------HTTCHHHHHHHHH-------HHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-------------------
T ss_pred ---------HHhhHHHHHHHHH-------HHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChh
Confidence 7899999999985 2222111000
Q ss_pred -------------------------------------hhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHH-----cCC
Q 002846 278 -------------------------------------NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKEN-----LGQ 315 (874)
Q Consensus 278 -------------------------------------~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~-----~Gi 315 (874)
...+-.+... ...+.+.|++++|..+|+++.. ..-
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 225 (514)
T 2gw1_A 149 KERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLS---NLYKRSPESYDKADESFTKAARLFEEQLDK 225 (514)
T ss_dssp --------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHH---HHSSCCTTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHH---HHHhhhhccHHHHHHHHHHHHHHhhhhhcc
Confidence 0001000000 0001147899999999999988 433
Q ss_pred CCCee--------eec--------cccHHHHHHhhhcC---CCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHH
Q 002846 316 FSNGH--------MKL--------NSQLLDGRSNLERG---PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYE 376 (874)
Q Consensus 316 ~Pd~~--------ty~--------~g~~~eA~~l~~~m---~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~ 376 (874)
.|+.. .+. .|+..+|...|.+. .|+...| ..+...+...|++++|.+.|+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~-----------~~l~~~~~~~~~~~~A~~~~~ 294 (514)
T 2gw1_A 226 NNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSY-----------IYMALIMADRNDSTEYYNYFD 294 (514)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHH-----------HHHHHHHHTSSCCTTGGGHHH
T ss_pred CccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHH-----------HHHHHHHHHCCCHHHHHHHHH
Confidence 44432 111 78899999998887 5665555 777788889999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 002846 377 KMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE 456 (874)
Q Consensus 377 ~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd 456 (874)
++.... +.+..+|..+...+...|++++|...+++..+.. ..+...|..+...|...|+.++|..+++.+.+.. ..+
T Consensus 295 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 371 (514)
T 2gw1_A 295 KALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEA 371 (514)
T ss_dssp HHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTC
T ss_pred HHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccC
Confidence 988754 3466788899999999999999999999988763 2356678888888889999999999999987753 225
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 457 EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 457 ~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
...|..+...+.+.|++++|..+|.++...
T Consensus 372 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 401 (514)
T 2gw1_A 372 PEVPNFFAEILTDKNDFDKALKQYDLAIEL 401 (514)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 677888888899999999999999888764
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.17 E-value=1.1e-08 Score=109.16 Aligned_cols=260 Identities=9% Similarity=-0.067 Sum_probs=205.1
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 002846 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (874)
Q Consensus 159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (874)
.....++..+|.++|+.+..... .+...+..++..+.+.|++++|+.+|+++.+.. +-+...|..+-..+.
T Consensus 31 ~~~~~g~~~~A~~~~~~~l~~~p-------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~- 101 (330)
T 3hym_B 31 RHYYNCDFKMCYKLTSVVMEKDP-------FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYL- 101 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-------TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHH-
T ss_pred HHHHcCCHHHHHHHHHHHHHcCC-------CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHH-
Confidence 44566999999999999865421 122466677788899999999999999998753 234567777777777
Q ss_pred cccCCCcccCCC-CHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCC
Q 002846 239 AAVGVVKPAKSG-SGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS 317 (874)
Q Consensus 239 ~~~~~~~~~k~G-~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~P 317 (874)
..| +.++|...|. ..... .-.+...|..+... +...|++++|...|.+..... |
T Consensus 102 ---------~~~~~~~~A~~~~~-------~a~~~-~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~a~~~~--~ 156 (330)
T 3hym_B 102 ---------MVGHKNEHARRYLS-------KATTL-EKTYGPAWIAYGHS------FAVESEHDQAMAAYFTAAQLM--K 156 (330)
T ss_dssp ---------HSCSCHHHHHHHHH-------HHHTT-CTTCTHHHHHHHHH------HHHHTCHHHHHHHHHHHHHHT--T
T ss_pred ---------HhhhhHHHHHHHHH-------HHHHh-CCccHHHHHHHHHH------HHHccCHHHHHHHHHHHHHhc--c
Confidence 667 8999999995 33332 22255668888888 999999999999999988763 2
Q ss_pred CeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002846 318 NGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMA 397 (874)
Q Consensus 318 d~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~ 397 (874)
+. ...+ ..+...+...|++++|.+.|++..... +.+..++..+...+
T Consensus 157 ~~---------------------~~~~-----------~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~ 203 (330)
T 3hym_B 157 GC---------------------HLPM-----------LYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVA 203 (330)
T ss_dssp TC---------------------SHHH-----------HHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHH
T ss_pred cc---------------------HHHH-----------HHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 21 1112 556778889999999999999998764 45678999999999
Q ss_pred HhcCChhHHHHHHHHHHHCC--------CCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 002846 398 MSMGDGDMAFDMVKRMKSLG--------INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE 469 (874)
Q Consensus 398 ~~~G~~d~A~~l~~~M~~~G--------i~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~ 469 (874)
...|++++|...+++..... .......|..+-..|.+.|+.++|...|+...+.. ..+...|..+-..+.+
T Consensus 204 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 282 (330)
T 3hym_B 204 FQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSL 282 (330)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHH
Confidence 99999999999999887641 13345688889999999999999999999998754 2356788899999999
Q ss_pred cCCchHHHHHHHHHHhc
Q 002846 470 AGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 470 ~G~~d~A~~ll~~M~~~ 486 (874)
.|+.++|...|.+..+.
T Consensus 283 ~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 283 MGNFENAVDYFHTALGL 299 (330)
T ss_dssp HTCHHHHHHHHHTTTTT
T ss_pred hccHHHHHHHHHHHHcc
Confidence 99999999999998765
No 15
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.17 E-value=2.1e-09 Score=117.20 Aligned_cols=272 Identities=10% Similarity=-0.023 Sum_probs=190.4
Q ss_pred CChhHHHH-HHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccC
Q 002846 164 TNDSGQYK-VRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVG 242 (874)
Q Consensus 164 ~~~~~A~~-vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~ 242 (874)
++.++|.. .|++.... .++. ...+...|..+-..+.+.|++++|+.+|+++.+.. +.+...|..+-.++.
T Consensus 39 ~~~~~a~~~~~~~a~~~--~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~----- 109 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQF--EEEN-PLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQA----- 109 (368)
T ss_dssp -------CHHHHCCCCC--CSSC-TTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHH-----
T ss_pred HHHHHHHhhhhhHHHhc--CCCC-cccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-----
Confidence 45556666 66654221 1211 11133567788889999999999999999999764 346778888888888
Q ss_pred CCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeee
Q 002846 243 VVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMK 322 (874)
Q Consensus 243 ~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty 322 (874)
+.|+.++|...|. +.... .-.+...|..+... +...|++++|...|.++.... |+....
T Consensus 110 -----~~g~~~~A~~~~~-------~al~~-~~~~~~~~~~l~~~------~~~~g~~~~A~~~~~~~~~~~--~~~~~~ 168 (368)
T 1fch_A 110 -----ENEQELLAISALR-------RCLEL-KPDNQTALMALAVS------FTNESLQRQACEILRDWLRYT--PAYAHL 168 (368)
T ss_dssp -----HTTCHHHHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHTS--TTTGGG
T ss_pred -----HCcCHHHHHHHHH-------HHHhc-CCCCHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHhC--cCcHHH
Confidence 7899999999995 44433 33366678888888 999999999999999998864 322211
Q ss_pred c--cccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh
Q 002846 323 L--NSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVP-MNEASLTAVGRMAMS 399 (874)
Q Consensus 323 ~--~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~-Pd~~tyn~LI~~~~~ 399 (874)
. .+..... ..+. .. ...+..+...|++++|.++|+++...... ++..++..+...|..
T Consensus 169 ~~~~~~~~~~------~~~~-~~------------~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~ 229 (368)
T 1fch_A 169 VTPAEEGAGG------AGLG-PS------------KRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL 229 (368)
T ss_dssp CC----------------------------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhh------hccc-HH------------HHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHH
Confidence 0 0000000 0000 00 11233444888999999999998875422 157889999999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHH
Q 002846 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL 479 (874)
Q Consensus 400 ~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~l 479 (874)
.|++++|...|+++.... +.+...|..+...|.+.|+.++|...|+.+.+.. ..+...|..|...|.+.|++++|...
T Consensus 230 ~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 307 (368)
T 1fch_A 230 SGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEH 307 (368)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999887752 2346788888889999999999999999987753 23577888899999999999999999
Q ss_pred HHHHHhc
Q 002846 480 LHKLRTS 486 (874)
Q Consensus 480 l~~M~~~ 486 (874)
|.+....
T Consensus 308 ~~~al~~ 314 (368)
T 1fch_A 308 FLEALNM 314 (368)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9888764
No 16
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.16 E-value=9e-10 Score=120.65 Aligned_cols=246 Identities=9% Similarity=-0.030 Sum_probs=184.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhh
Q 002846 190 EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTEL 269 (874)
Q Consensus 190 d~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em 269 (874)
+...|..+-..+.+.|++++|+.+|+++.+.. +.+...|..+-.++. +.|+.++|...|. +.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~----------~~g~~~~A~~~~~-------~a 125 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQA----------ENENEQAAIVALQ-------RC 125 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----------HTTCHHHHHHHHH-------HH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHH----------HCCCHHHHHHHHH-------HH
Confidence 34568888899999999999999999998754 346788888888888 7899999999995 44
Q ss_pred hhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCccccccccc
Q 002846 270 GDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSI 349 (874)
Q Consensus 270 ~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i 349 (874)
... .-.+...|..+... |...|++++|...|+++.... |+........ ......+
T Consensus 126 l~~-~p~~~~~~~~l~~~------~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~-----------~~~~~~~----- 180 (365)
T 4eqf_A 126 LEL-QPNNLKALMALAVS------YTNTSHQQDACEALKNWIKQN--PKYKYLVKNK-----------KGSPGLT----- 180 (365)
T ss_dssp HHH-CTTCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHC--HHHHCC---------------------------
T ss_pred Hhc-CCCCHHHHHHHHHH------HHccccHHHHHHHHHHHHHhC--ccchHHHhhh-----------ccchHHH-----
Confidence 432 22356778999888 999999999999999998753 2211110000 0001111
Q ss_pred ccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHH
Q 002846 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVP-MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428 (874)
Q Consensus 350 ~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~-Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~L 428 (874)
..+...+.+.|++++|.++|+++....-. ++..+|..+...|...|++++|...|++..+.. +.+..+|+.+
T Consensus 181 ------~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 253 (365)
T 4eqf_A 181 ------RRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRL 253 (365)
T ss_dssp --------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred ------HHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 44567788889999999999998876422 268889999999999999999999999988762 2357788889
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 429 I~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
...|.+.|++++|...|+.+.+.. .-+...|..|-..|.+.|++++|...|++....
T Consensus 254 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 254 GATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSL 310 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999999999999999988753 224778888999999999999999999988764
No 17
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.16 E-value=5e-09 Score=111.53 Aligned_cols=257 Identities=9% Similarity=-0.065 Sum_probs=193.9
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 002846 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (874)
Q Consensus 159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (874)
.....++..+|..+|+++.... +.+...|..+...+.+.|++++|+..|+++.+.. +.+...+..+-..+.
T Consensus 30 ~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~- 100 (327)
T 3cv0_A 30 SMLKLANLAEAALAFEAVCQAA-------PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT- 100 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-
T ss_pred HHHHhccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH-
Confidence 4557889999999999986532 1245788889999999999999999999998753 346778888888887
Q ss_pred cccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhh--------------hc-CcccChhhhhcCChHHH
Q 002846 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYG--------------SS-PMIDKLESNSSYRFDDL 303 (874)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~L--------------I~-~~~~~~~~~~~g~~e~A 303 (874)
..|+.++|...+. +.... .-.+...+..+ -. . +...|++++|
T Consensus 101 ---------~~~~~~~A~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~A 157 (327)
T 3cv0_A 101 ---------NEHNANAALASLR-------AWLLS-QPQYEQLGSVNLQADVDIDDLNVQSEDFF------FAAPNEYREC 157 (327)
T ss_dssp ---------HTTCHHHHHHHHH-------HHHHT-STTTTTC--------------------CC------TTSHHHHHHH
T ss_pred ---------HcCCHHHHHHHHH-------HHHHh-CCccHHHHHHHhHHHHHHHHHHHHHHhHH------HHHcccHHHH
Confidence 7899999999995 33332 11122223222 11 2 5667788888
Q ss_pred HHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 002846 304 DSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEV 383 (874)
Q Consensus 304 ~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv 383 (874)
...+.++.... |+ +...+ ..+...+.+.|++++|.++|+++....
T Consensus 158 ~~~~~~~~~~~--~~---------------------~~~~~-----------~~la~~~~~~~~~~~A~~~~~~~~~~~- 202 (327)
T 3cv0_A 158 RTLLHAALEMN--PN---------------------DAQLH-----------ASLGVLYNLSNNYDSAAANLRRAVELR- 202 (327)
T ss_dssp HHHHHHHHHHS--TT---------------------CHHHH-----------HHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhhC--CC---------------------CHHHH-----------HHHHHHHHHhccHHHHHHHHHHHHHhC-
Confidence 88888887653 21 11122 677788889999999999999988753
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC--------
Q 002846 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-------- 455 (874)
Q Consensus 384 ~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~P-------- 455 (874)
+.+..+|..+...+...|++++|...|+++.+.. ..+...|..+...|.+.|+.++|.+.|+......-..
T Consensus 203 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 281 (327)
T 3cv0_A 203 PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEAS 281 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----C
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccch
Confidence 3467889999999999999999999999987753 2346778888899999999999999999887653111
Q ss_pred ---CHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 002846 456 ---EEPELEALLRVSVEAGKGDRVYYLLHKL 483 (874)
Q Consensus 456 ---d~~ty~~LI~~~~~~G~~d~A~~ll~~M 483 (874)
+...|..+..++.+.|+.++|..++++.
T Consensus 282 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 282 REATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp CTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred hhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3678889999999999999999887643
No 18
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.16 E-value=2.6e-11 Score=137.30 Aligned_cols=225 Identities=13% Similarity=0.096 Sum_probs=92.4
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 002846 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (874)
Q Consensus 159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (874)
.+.+.++.++|.+.++.+. .| .+|..|..++.+.|++.+|++.|.+. +|..+|..++.+|.
T Consensus 12 ll~~~~~ld~A~~fae~~~----------~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae- 72 (449)
T 1b89_A 12 LIEHIGNLDRAYEFAERCN----------EP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAAN- 72 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHccCHHHHHHHHHhCC----------Ch--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHH-
Confidence 3446778899999999981 12 49999999999999999999999763 67889999999998
Q ss_pred cccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCC
Q 002846 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (874)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd 318 (874)
..|++++|...+. |..+ ..++..+.+.|+.+ |.+.|+++++.++++ .|+
T Consensus 73 ---------~~g~~EeAi~yl~--------~ark-~~~~~~i~~~Li~~------Y~Klg~l~e~e~f~~-------~pn 121 (449)
T 1b89_A 73 ---------TSGNWEELVKYLQ--------MARK-KARESYVETELIFA------LAKTNRLAELEEFIN-------GPN 121 (449)
T ss_dssp ------------------------------------------------------------CHHHHTTTTT-------CC-
T ss_pred ---------hCCCHHHHHHHHH--------HHHH-hCccchhHHHHHHH------HHHhCCHHHHHHHHc-------CCc
Confidence 7899999999773 4443 34466789999999 999999999988875 255
Q ss_pred eeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 002846 319 GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAM 398 (874)
Q Consensus 319 ~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~ 398 (874)
..+| +.+-+.|...|.+++|..+|..+ ..|..|+.++.
T Consensus 122 ~~a~---------------------------------~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~ 159 (449)
T 1b89_A 122 NAHI---------------------------------QQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLV 159 (449)
T ss_dssp ------------------------------------------------CTTTHHHHHHHT---------TCHHHHHHHHH
T ss_pred HHHH---------------------------------HHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHH
Confidence 5555 88889999999999999999977 37999999999
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHH
Q 002846 399 SMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYY 478 (874)
Q Consensus 399 ~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ 478 (874)
+.|++++|.+.+.++ -+..+|..++.+|+..|+++.|...... +..+......|+..|.+.|++++|..
T Consensus 160 ~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~ 228 (449)
T 1b89_A 160 HLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELIT 228 (449)
T ss_dssp TTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHH
Confidence 999999999999887 3788999999999999999999655543 33444556678999999999999999
Q ss_pred HHHHHHhc
Q 002846 479 LLHKLRTS 486 (874)
Q Consensus 479 ll~~M~~~ 486 (874)
+|+.-...
T Consensus 229 lLe~aL~l 236 (449)
T 1b89_A 229 MLEAALGL 236 (449)
T ss_dssp HHHHHTTS
T ss_pred HHHHHhCC
Confidence 99887644
No 19
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.13 E-value=2.9e-08 Score=106.72 Aligned_cols=279 Identities=8% Similarity=-0.072 Sum_probs=203.1
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 002846 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (874)
Q Consensus 159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (874)
.....++..+|...|+.+.... +.+...|..+-..+...|++++|+..|+++.+.. +-+...|..+-.++.
T Consensus 12 ~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~- 82 (359)
T 3ieg_A 12 KLLAAGQLADALSQFHAAVDGD-------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLL- 82 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHH-
Confidence 4557789999999999986532 1245788899999999999999999999998753 235677877878887
Q ss_pred cccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCC---CchhhhHhh------------hcCcccChhhhhcCChHHH
Q 002846 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDM---DNNGQLDYG------------SSPMIDKLESNSSYRFDDL 303 (874)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi---~d~vtyn~L------------I~~~~~~~~~~~~g~~e~A 303 (874)
..|+.++|...|. +.... .- .+...+..+ ... +...|++++|
T Consensus 83 ---------~~~~~~~A~~~~~-------~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~------~~~~~~~~~A 139 (359)
T 3ieg_A 83 ---------KQGKLDEAEDDFK-------KVLKS-NPSEQEEKEAESQLVKADEMQRLRSQALD------AFDGADYTAA 139 (359)
T ss_dssp ---------HHTCHHHHHHHHH-------HHHTS-CCCHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHTTCHHHH
T ss_pred ---------HcCChHHHHHHHH-------HHHhc-CCcccChHHHHHHHHHHHHHHHHHHHHHH------HHHccCHHHH
Confidence 7799999999995 33332 22 122233333 345 7889999999
Q ss_pred HHHHHHHHHcCCCCCe-eeec--------cccHHHHHHhhhcC---CC-CcccccccccccCCccchHHHHHHhcCCHHH
Q 002846 304 DSTFNEKENLGQFSNG-HMKL--------NSQLLDGRSNLERG---PD-DQSRKKDWSIDNQDADEIRLSEDAKKYAFQR 370 (874)
Q Consensus 304 ~~lf~eM~~~Gi~Pd~-~ty~--------~g~~~eA~~l~~~m---~p-d~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~ 370 (874)
..+|+++.... |+. ..+. .|+.++|...+.+. .| +...| ..+...+...|++++
T Consensus 140 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-----------~~la~~~~~~~~~~~ 206 (359)
T 3ieg_A 140 ITFLDKILEVC--VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAF-----------YKISTLYYQLGDHEL 206 (359)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHH-----------HHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHhC--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH-----------HHHHHHHHHcCCHHH
Confidence 99999998763 332 2222 78888888888876 33 34455 667778888889999
Q ss_pred HHHHHHHHHHCCCCCCHHHHH------------HHHHHHHhcCChhHHHHHHHHHHHCCCCCCcc-----cHHHHHHHHH
Q 002846 371 GFEIYEKMCLDEVPMNEASLT------------AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR-----SYGPALSVFC 433 (874)
Q Consensus 371 A~~lf~~M~~~Gv~Pd~~tyn------------~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~-----tYn~LI~a~~ 433 (874)
|.+.|+...... +.+..++. .+...+.+.|++++|...+++..+.. |+.. .|..+-..|.
T Consensus 207 A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~ 283 (359)
T 3ieg_A 207 SLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFS 283 (359)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHH
Confidence 999888887643 22333333 23566888899999999988887653 4432 2344567788
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 434 k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
+.|+.++|...++...+.. ..+...|..+-..+...|++++|...|.+..+.
T Consensus 284 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 284 KDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 8899999999998887753 236778888888888899999999999888876
No 20
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.07 E-value=6.2e-09 Score=112.21 Aligned_cols=243 Identities=13% Similarity=0.022 Sum_probs=148.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCC
Q 002846 199 DMCSKRGDVMGAIRLYDKAQREGIKLGQ--YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD 276 (874)
Q Consensus 199 ~a~~k~G~~~~Al~lf~~M~~~Gi~pd~--~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~ 276 (874)
....-.|++..|+..++... ...|+. ...-.+..+|. ..|+.+.|...+. .. .-+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~--~~~p~~~~e~~~~l~r~yi----------~~g~~~~al~~~~-------~~----~~~ 63 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVK--PSSPERDVERDVFLYRAYL----------AQRKYGVVLDEIK-------PS----SAP 63 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSC--CCSHHHHHHHHHHHHHHHH----------HTTCHHHHHHHSC-------TT----SCH
T ss_pred HHHHHHHHHHHHHHHHHhcc--cCCchhhHHHHHHHHHHHH----------HCCCHHHHHHHhc-------cc----CCh
Confidence 34445677777777665542 222332 23334445555 5566777766653 10 111
Q ss_pred chhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeec---------cccHHHHHHhhhcCCCCccccccc
Q 002846 277 NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL---------NSQLLDGRSNLERGPDDQSRKKDW 347 (874)
Q Consensus 277 d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~---------~g~~~eA~~l~~~m~pd~~ty~~w 347 (874)
+..++..+... ++..++.++|.+.+++|...++.|+...+. .|+.++|...+++ ..+...+
T Consensus 64 ~~~a~~~la~~------~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-~~~~~~~--- 133 (291)
T 3mkr_A 64 ELQAVRMFAEY------LASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-GDSLECM--- 133 (291)
T ss_dssp HHHHHHHHHHH------HHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-CCSHHHH---
T ss_pred hHHHHHHHHHH------HcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-CCCHHHH---
Confidence 34456666666 777777777777777777766666554432 4555555555555 2233333
Q ss_pred ccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCccc
Q 002846 348 SIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASL---TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS 424 (874)
Q Consensus 348 ~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~ty---n~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~t 424 (874)
..+...+.+.|++++|.+.|+.+.... |+...+ .+++..+...|++++|..+|+++.+. .+.+...
T Consensus 134 --------~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~ 202 (291)
T 3mkr_A 134 --------AMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLL 202 (291)
T ss_dssp --------HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHH
T ss_pred --------HHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHH
Confidence 666677777888888888888777653 443211 22334444557788888888877766 3445667
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHhc
Q 002846 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDR-VYYLLHKLRTS 486 (874)
Q Consensus 425 Yn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~-A~~ll~~M~~~ 486 (874)
|+.+-.++.+.|++++|.+.|++..+.. .-+..++..++..+...|+.++ +.++++++.+.
T Consensus 203 ~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 203 LNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 7777777778888888888887776643 2256677777777777777765 56777777655
No 21
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.05 E-value=1.3e-08 Score=115.87 Aligned_cols=268 Identities=9% Similarity=-0.003 Sum_probs=209.1
Q ss_pred hcCChhHHHHHHHHHhh-----CCCCCCCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 002846 162 QRTNDSGQYKVRGITDE-----KGSKKSKK--DRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLY 234 (874)
Q Consensus 162 k~~~~~~A~~vf~eM~~-----~g~k~~~g--~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~ 234 (874)
+.++.++|..+|+++.. ....++.+ .+.+...|..+...+.+.|++++|+.+|+++.+.. |+...|..+..
T Consensus 201 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~ 278 (514)
T 2gw1_A 201 SPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMAL 278 (514)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHH
Confidence 37889999999999866 32122210 02234678888899999999999999999998765 44778888888
Q ss_pred HHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcC
Q 002846 235 LCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG 314 (874)
Q Consensus 235 a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~G 314 (874)
++. ..|+.++|...+. +.... ...+...|..+... +...|++++|...|++.....
T Consensus 279 ~~~----------~~~~~~~A~~~~~-------~~~~~-~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~~~~~~ 334 (514)
T 2gw1_A 279 IMA----------DRNDSTEYYNYFD-------KALKL-DSNNSSVYYHRGQM------NFILQNYDQAGKDFDKAKELD 334 (514)
T ss_dssp HHH----------TSSCCTTGGGHHH-------HHHTT-CTTCTHHHHHHHHH------HHHTTCTTHHHHHHHHHHHTC
T ss_pred HHH----------HCCCHHHHHHHHH-------HHhhc-CcCCHHHHHHHHHH------HHHhCCHHHHHHHHHHHHHhC
Confidence 888 7889999999985 33332 22255678888888 999999999999999988753
Q ss_pred CCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 002846 315 QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVG 394 (874)
Q Consensus 315 i~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI 394 (874)
|+. ...+ ..+...+.+.|++++|..+|+++.... +.+..+|..+.
T Consensus 335 --~~~---------------------~~~~-----------~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 379 (514)
T 2gw1_A 335 --PEN---------------------IFPY-----------IQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFA 379 (514)
T ss_dssp --SSC---------------------SHHH-----------HHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHH
T ss_pred --hhh---------------------HHHH-----------HHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHH
Confidence 221 1122 667778889999999999999988753 33567899999
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCC-CCC----cccHHHHHHHHHh---CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002846 395 RMAMSMGDGDMAFDMVKRMKSLGI-NPR----LRSYGPALSVFCN---NGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (874)
Q Consensus 395 ~~~~~~G~~d~A~~l~~~M~~~Gi-~Pd----~~tYn~LI~a~~k---~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~ 466 (874)
..+...|++++|...++++....- .|+ ...|..+...|.. .|++++|...|+.+.... ..+...|..+...
T Consensus 380 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 458 (514)
T 2gw1_A 380 EILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQM 458 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 999999999999999999876421 122 2378889999999 999999999999998754 2367788899999
Q ss_pred HHhcCCchHHHHHHHHHHhcCCCCChh
Q 002846 467 SVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (874)
Q Consensus 467 ~~~~G~~d~A~~ll~~M~~~~~~~sp~ 493 (874)
|.+.|+.++|...|++.... .+...
T Consensus 459 ~~~~g~~~~A~~~~~~a~~~--~~~~~ 483 (514)
T 2gw1_A 459 KLQQEDIDEAITLFEESADL--ARTME 483 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CSSHH
T ss_pred HHHhcCHHHHHHHHHHHHHh--ccccH
Confidence 99999999999999999887 55443
No 22
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.04 E-value=5.5e-08 Score=104.52 Aligned_cols=275 Identities=10% Similarity=0.043 Sum_probs=206.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhh
Q 002846 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG 270 (874)
Q Consensus 191 ~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~ 270 (874)
+..|..+-..+.+.|++++|+.+|+++.+.. +.+...+..+-.++. ..|+.++|...|. +..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~----------~~~~~~~A~~~~~-------~~~ 64 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFL----------AMGKSKAALPDLT-------KVI 64 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----------HHTCHHHHHHHHH-------HHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHH----------HccCHHHHHHHHH-------HHH
Confidence 4567788889999999999999999998753 335677777777777 7799999999995 444
Q ss_pred hcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCC---Ce--------------------eee-cccc
Q 002846 271 DSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS---NG--------------------HMK-LNSQ 326 (874)
Q Consensus 271 ~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~P---d~--------------------~ty-~~g~ 326 (874)
.. .-.+...|..+-.. +...|++++|...|.+.... .| +. ..| ..|+
T Consensus 65 ~~-~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 65 AL-KMDFTAARLQRGHL------LLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGAD 135 (359)
T ss_dssp HH-CTTCHHHHHHHHHH------HHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred Hh-CCCcchHHHHHHHH------HHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 32 22255668888888 99999999999999999876 34 21 111 1788
Q ss_pred HHHHHHhhhcC---CC-CcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 002846 327 LLDGRSNLERG---PD-DQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD 402 (874)
Q Consensus 327 ~~eA~~l~~~m---~p-d~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~ 402 (874)
..+|...++++ .| +...+ ..+-..+.+.|++++|.+.|+++.... +.+..++..+...+...|+
T Consensus 136 ~~~A~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 203 (359)
T 3ieg_A 136 YTAAITFLDKILEVCVWDAELR-----------ELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGD 203 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHH-----------HHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCCchHHH-----------HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 99999999887 44 44455 677788899999999999999998764 4578899999999999999
Q ss_pred hhHHHHHHHHHHHCCCCCCcc-cHH------------HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH-----HHHHHH
Q 002846 403 GDMAFDMVKRMKSLGINPRLR-SYG------------PALSVFCNNGDVDKACSVEEHMLEHGVYPEEP-----ELEALL 464 (874)
Q Consensus 403 ~d~A~~l~~~M~~~Gi~Pd~~-tYn------------~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~-----ty~~LI 464 (874)
+++|...|++..+. .|+.. .+. .+...+.+.|+.++|...++.+.+.. |+.. .|..+-
T Consensus 204 ~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la 279 (359)
T 3ieg_A 204 HELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERIC 279 (359)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHH
Confidence 99999999998865 34432 222 22556889999999999999988754 4432 244566
Q ss_pred HHHHhcCCchHHHHHHHHHHhcCCCC-ChhHHHH-HHHHHhcchHHHh
Q 002846 465 RVSVEAGKGDRVYYLLHKLRTSVRKV-SPSTADV-IAKWFNSKEAARL 510 (874)
Q Consensus 465 ~~~~~~G~~d~A~~ll~~M~~~~~~~-sp~T~~~-I~~~~~s~~~~~a 510 (874)
..+...|++++|..++++.... .| .+.++.. -..+...+...+|
T Consensus 280 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A 325 (359)
T 3ieg_A 280 HCFSKDEKPVEAIRICSEVLQM--EPDNVNALKDRAEAYLIEEMYDEA 325 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHH
Confidence 7889999999999999999886 44 3334433 4444444444333
No 23
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.04 E-value=2.8e-08 Score=105.90 Aligned_cols=234 Identities=11% Similarity=-0.108 Sum_probs=185.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhh
Q 002846 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (874)
Q Consensus 192 ~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~ 271 (874)
..+..+...+...|++++|+.+|+++.+.. +.+...+..+..++. ..|+.++|...+. ++..
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~----------~~~~~~~A~~~~~-------~~~~ 84 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLV----------ELNKANELFYLSH-------KLVD 84 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHH----------HHTCHHHHHHHHH-------HHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHH----------HhhhHHHHHHHHH-------HHHH
Confidence 567778888899999999999999998653 223445555666666 6789999999995 4444
Q ss_pred cCCCCchhhhHhhhcCcccChhhhhcC-ChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccc
Q 002846 272 SRDMDNNGQLDYGSSPMIDKLESNSSY-RFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID 350 (874)
Q Consensus 272 ~~gi~d~vtyn~LI~~~~~~~~~~~~g-~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~ 350 (874)
. .-.+...|..+-.. +...| ++++|...|++..... |+. ...|
T Consensus 85 ~-~~~~~~~~~~l~~~------~~~~~~~~~~A~~~~~~a~~~~--~~~---------------------~~~~------ 128 (330)
T 3hym_B 85 L-YPSNPVSWFAVGCY------YLMVGHKNEHARRYLSKATTLE--KTY---------------------GPAW------ 128 (330)
T ss_dssp H-CTTSTHHHHHHHHH------HHHSCSCHHHHHHHHHHHHTTC--TTC---------------------THHH------
T ss_pred h-CcCCHHHHHHHHHH------HHHhhhhHHHHHHHHHHHHHhC--Ccc---------------------HHHH------
Confidence 3 22355667777777 88899 9999999999887653 221 1122
Q ss_pred cCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHH
Q 002846 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430 (874)
Q Consensus 351 ~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~ 430 (874)
..+...+...|++++|.+.|++..... +.+..++..+...|...|++++|...+++..+.. +.+...+..+..
T Consensus 129 -----~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~ 201 (330)
T 3hym_B 129 -----IAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGV 201 (330)
T ss_dssp -----HHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHH
T ss_pred -----HHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 677788999999999999999988764 2345677779999999999999999999988763 345678888999
Q ss_pred HHHhCCChhHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 431 VFCNNGDVDKACSVEEHMLEHG--------VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 431 a~~k~G~~~~A~~l~~eM~~~G--------v~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
.|...|++++|...++...... .......|..+-..+...|++++|...|++....
T Consensus 202 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 265 (330)
T 3hym_B 202 VAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL 265 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 9999999999999999987641 1344678999999999999999999999999876
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.04 E-value=4.8e-08 Score=103.90 Aligned_cols=246 Identities=8% Similarity=-0.081 Sum_probs=184.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhh
Q 002846 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (874)
Q Consensus 192 ~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~ 271 (874)
..|-.+-..+.+.|++++|+.+|+++.+.. +-+...+..+-.++. ..|+.++|...|. +...
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~----------~~~~~~~A~~~~~-------~a~~ 83 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQA----------ENEKDGLAIIALN-------HARM 83 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----------HTTCHHHHHHHHH-------HHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH----------HcCCHHHHHHHHH-------HHHh
Confidence 345666778899999999999999998754 336677888877887 7899999999995 4433
Q ss_pred cCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCccccccccccc
Q 002846 272 SRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDN 351 (874)
Q Consensus 272 ~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~ 351 (874)
. .-.+...|..+... +...|++++|...|+++.... |+..... ..+....|+....
T Consensus 84 ~-~~~~~~~~~~la~~------~~~~~~~~~A~~~~~~~~~~~--~~~~~~~--------~~~~~~~~~~~~~------- 139 (327)
T 3cv0_A 84 L-DPKDIAVHAALAVS------HTNEHNANAALASLRAWLLSQ--PQYEQLG--------SVNLQADVDIDDL------- 139 (327)
T ss_dssp H-CTTCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHTS--TTTTTC-----------------------------
T ss_pred c-CcCCHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHhC--CccHHHH--------HHHhHHHHHHHHH-------
Confidence 2 22355668888888 999999999999999998763 2221110 0000000000000
Q ss_pred CCccchHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHH
Q 002846 352 QDADEIRLSE--DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429 (874)
Q Consensus 352 ~~~~n~lI~~--~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI 429 (874)
..+-.. +...|++++|.++|+++.... +.+..++..+...+...|++++|..+++++.+.. ..+...|..+.
T Consensus 140 ----~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 213 (327)
T 3cv0_A 140 ----NVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLG 213 (327)
T ss_dssp ----------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ----HHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 001022 567789999999999998764 3478899999999999999999999999988763 23567888899
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 430 ~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
..|...|+.++|...|+.+.+.. ..+...|..+...+.+.|++++|...|++....
T Consensus 214 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 269 (327)
T 3cv0_A 214 ATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM 269 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99999999999999999988754 235788999999999999999999999998876
No 25
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.99 E-value=2.1e-08 Score=108.03 Aligned_cols=241 Identities=9% Similarity=0.032 Sum_probs=178.4
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHH
Q 002846 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLL-YLCS 237 (874)
Q Consensus 159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL-~a~~ 237 (874)
.....++.+.|...++.. .+|+..++..+...+++.|+.++|++.|+++...++.|+...+..++ .++.
T Consensus 43 ~yi~~g~~~~al~~~~~~----------~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~ 112 (291)
T 3mkr_A 43 AYLAQRKYGVVLDEIKPS----------SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYF 112 (291)
T ss_dssp HHHHTTCHHHHHHHSCTT----------SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHhccc----------CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHH
Confidence 344566777777544321 35677889999999999999999999999999888777665555444 5555
Q ss_pred hcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCC
Q 002846 238 SAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS 317 (874)
Q Consensus 238 ~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~P 317 (874)
..|+.++|...+. . -.+...+..+... +.+.|++++|...|+++.... |
T Consensus 113 ----------~~g~~~~Al~~l~-------~------~~~~~~~~~l~~~------~~~~g~~~~A~~~l~~~~~~~--p 161 (291)
T 3mkr_A 113 ----------YDQNPDAALRTLH-------Q------GDSLECMAMTVQI------LLKLDRLDLARKELKKMQDQD--E 161 (291)
T ss_dssp ----------HTTCHHHHHHHHT-------T------CCSHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHC--T
T ss_pred ----------HCCCHHHHHHHHh-------C------CCCHHHHHHHHHH------HHHCCCHHHHHHHHHHHHhhC--c
Confidence 7799999999995 1 1255668888888 999999999999999998873 5
Q ss_pred CeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002846 318 NGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMA 397 (874)
Q Consensus 318 d~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~ 397 (874)
+...+ . ....++..+...|++++|..+|+++... .+.+...|+.+..++
T Consensus 162 ~~~~~---------~---------------------l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~ 210 (291)
T 3mkr_A 162 DATLT---------Q---------------------LATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACH 210 (291)
T ss_dssp TCHHH---------H---------------------HHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHH
T ss_pred CcHHH---------H---------------------HHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHH
Confidence 43211 0 0022334444568999999999999987 466889999999999
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHH
Q 002846 398 MSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK-ACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRV 476 (874)
Q Consensus 398 ~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~-A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A 476 (874)
.+.|++++|...|++..... +-+..++..++..+...|+.++ |.++++.+.+.. |+... +.+...+.+.+|++
T Consensus 211 ~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~--P~~~~---~~d~~~~~~~fd~~ 284 (291)
T 3mkr_A 211 MAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH--RSHPF---IKEYRAKENDFDRL 284 (291)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHH---HHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--CCChH---HHHHHHHHHHHHHH
Confidence 99999999999999987652 2356678889999999999876 678999888743 65443 23334444444444
Q ss_pred H
Q 002846 477 Y 477 (874)
Q Consensus 477 ~ 477 (874)
.
T Consensus 285 ~ 285 (291)
T 3mkr_A 285 V 285 (291)
T ss_dssp H
T ss_pred H
Confidence 3
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.96 E-value=1.5e-09 Score=122.88 Aligned_cols=187 Identities=12% Similarity=0.068 Sum_probs=69.7
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhH
Q 002846 203 KRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLD 282 (874)
Q Consensus 203 k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn 282 (874)
+.|++++|.++++++. +..+|..|..++. +.|++++|++.|. ..+|..+|.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l----------~~g~~~eAIdsfi-------------ka~D~~~y~ 65 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQL----------QKGMVKEAIDSYI-------------KADDPSSYM 65 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHH----------HcCCHHHHHHHHH-------------cCCCHHHHH
Confidence 5678999999999983 3359999999999 8899999999994 234666899
Q ss_pred hhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHH
Q 002846 283 YGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSED 362 (874)
Q Consensus 283 ~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~ 362 (874)
.++.+ +...|++++|...+....+. .+++.+. +.++.+|
T Consensus 66 ~V~~~------ae~~g~~EeAi~yl~~ark~--~~~~~i~---------------------------------~~Li~~Y 104 (449)
T 1b89_A 66 EVVQA------ANTSGNWEELVKYLQMARKK--ARESYVE---------------------------------TELIFAL 104 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHH------HHhCCCHHHHHHHHHHHHHh--CccchhH---------------------------------HHHHHHH
Confidence 99999 99999999999955544442 3444445 8999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHH
Q 002846 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKAC 442 (874)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~ 442 (874)
++.|+++++.++++ .|+..+|+.+.+.|...|.+++|..+|..+ ..|..+..++++.|++++|.
T Consensus 105 ~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AV 168 (449)
T 1b89_A 105 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAV 168 (449)
T ss_dssp ----CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHH
T ss_pred HHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHH
Confidence 99999999999885 378889999999999999999999999976 58999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHH
Q 002846 443 SVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLH 481 (874)
Q Consensus 443 ~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~ 481 (874)
+.+..+ -++.+|..++.+|+..|+++.|.....
T Consensus 169 ea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l 201 (449)
T 1b89_A 169 DGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGL 201 (449)
T ss_dssp HHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTT
T ss_pred HHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHH
Confidence 999988 388999999999999999999955544
No 27
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.95 E-value=5.3e-08 Score=99.78 Aligned_cols=225 Identities=12% Similarity=0.006 Sum_probs=182.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhh
Q 002846 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (874)
Q Consensus 192 ~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~ 271 (874)
..|..+-..+.+.|++++|+.+|+++.+.. .+...|..+-.++. ..|+.++|...+. ....
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~----------~~~~~~~A~~~~~-------~a~~ 66 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEY----------EKGEYETAISTLN-------DAVE 66 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHH----------HTTCHHHHHHHHH-------HHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHH----------HcccHHHHHHHHH-------HHHH
Confidence 567788889999999999999999999877 78888988888888 7899999999995 2222
Q ss_pred c-CCC-Cc----hhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCccccc
Q 002846 272 S-RDM-DN----NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKK 345 (874)
Q Consensus 272 ~-~gi-~d----~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~ 345 (874)
. ... ++ ...|..+-.. +...|++++|...|.+..... |+
T Consensus 67 ~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~a~~~~--~~--------------------------- 111 (258)
T 3uq3_A 67 QGREMRADYKVISKSFARIGNA------YHKLGDLKKTIEYYQKSLTEH--RT--------------------------- 111 (258)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHC--CC---------------------------
T ss_pred hCcccccchHHHHHHHHHHHHH------HHHcccHHHHHHHHHHHHhcC--ch---------------------------
Confidence 1 011 11 4568888888 999999999999999887752 11
Q ss_pred ccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccH
Q 002846 346 DWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY 425 (874)
Q Consensus 346 ~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tY 425 (874)
-..+.+.|++++|...++.+.... +.+...|..+...+...|++++|...+++..+.. ..+...|
T Consensus 112 -------------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~ 176 (258)
T 3uq3_A 112 -------------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGY 176 (258)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred -------------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHH
Confidence 134566788999999999988753 2346678889999999999999999999988763 2356778
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 426 n~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
..+-..|.+.|++++|...|+...+.. ..+...|..+-..+.+.|+.++|...|.+..+.
T Consensus 177 ~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 177 SNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 888999999999999999999998754 234788889999999999999999999988765
No 28
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.92 E-value=5.5e-08 Score=111.58 Aligned_cols=84 Identities=12% Similarity=-0.087 Sum_probs=67.6
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 002846 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (874)
Q Consensus 159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (874)
...+.++.++|...|+++.... +.+...|..+...|.+.|++++|+..|+++.+.+ +-+...+..+-.++.
T Consensus 34 ~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~- 104 (537)
T 3fp2_A 34 HFFTAKNFNEAIKYYQYAIELD-------PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANE- 104 (537)
T ss_dssp HHHHTTCCC-CHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-
T ss_pred HHHHhccHHHHHHHHHHHHhhC-------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH-
Confidence 4567889999999999986542 2356889999999999999999999999998754 335677777777777
Q ss_pred cccCCCcccCCCCHHHHHHHHh
Q 002846 239 AAVGVVKPAKSGSGMRTLDTFE 260 (874)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~ 260 (874)
..|+.++|...|.
T Consensus 105 ---------~~g~~~~A~~~~~ 117 (537)
T 3fp2_A 105 ---------SLGNFTDAMFDLS 117 (537)
T ss_dssp ---------HHTCHHHHHHHHH
T ss_pred ---------HcCCHHHHHHHHH
Confidence 7789999998884
No 29
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.91 E-value=4.6e-08 Score=106.40 Aligned_cols=258 Identities=10% Similarity=-0.074 Sum_probs=199.9
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 002846 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (874)
Q Consensus 159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (874)
...+.++..+|...|+.+.... +.+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++.
T Consensus 73 ~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~- 143 (368)
T 1fch_A 73 RRLQEGDLPNAVLLFEAAVQQD-------PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT- 143 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH-
Confidence 4567899999999999996542 2345789999999999999999999999998764 346788888888888
Q ss_pred cccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHh---------------hhcCcccChhhhhcCChHHH
Q 002846 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDY---------------GSSPMIDKLESNSSYRFDDL 303 (874)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~---------------LI~~~~~~~~~~~~g~~e~A 303 (874)
..|+.++|...|. ++... ...+...+.. .+.. +...|++++|
T Consensus 144 ---------~~g~~~~A~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~A 200 (368)
T 1fch_A 144 ---------NESLQRQACEILR-------DWLRY-TPAYAHLVTPAEEGAGGAGLGPSKRILGS------LLSDSLFLEV 200 (368)
T ss_dssp ---------HTTCHHHHHHHHH-------HHHHT-STTTGGGCC---------------CTTHH------HHHHHHHHHH
T ss_pred ---------HcCCHHHHHHHHH-------HHHHh-CcCcHHHHHHHHHHhhhhcccHHHHHHHH------HhhcccHHHH
Confidence 7899999999995 33332 1112222211 2233 4478888999
Q ss_pred HHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 002846 304 DSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEV 383 (874)
Q Consensus 304 ~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv 383 (874)
...|.++.... |+.. +..+| ..+...+.+.|++++|...|+++....
T Consensus 201 ~~~~~~a~~~~--p~~~-------------------~~~~~-----------~~l~~~~~~~g~~~~A~~~~~~al~~~- 247 (368)
T 1fch_A 201 KELFLAAVRLD--PTSI-------------------DPDVQ-----------CGLGVLFNLSGEYDKAVDCFTAALSVR- 247 (368)
T ss_dssp HHHHHHHHHHS--TTSC-------------------CHHHH-----------HHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhC--cCcc-------------------cHHHH-----------HHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 99998887753 2210 11222 777888999999999999999988753
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCC---------
Q 002846 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVY--------- 454 (874)
Q Consensus 384 ~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~--------- 454 (874)
+.+..+|..+...+...|++++|...|+++.+.. +.+...|..+-..|.+.|++++|...|+......-.
T Consensus 248 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 326 (368)
T 1fch_A 248 PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGG 326 (368)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CC
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcccccc
Confidence 3467899999999999999999999999988752 235678888999999999999999999998764211
Q ss_pred -CCHHHHHHHHHHHHhcCCchHHHHHHHH
Q 002846 455 -PEEPELEALLRVSVEAGKGDRVYYLLHK 482 (874)
Q Consensus 455 -Pd~~ty~~LI~~~~~~G~~d~A~~ll~~ 482 (874)
.....|..|..+|...|+.++|..++.+
T Consensus 327 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 327 AMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp CCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred chhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 1268899999999999999999998763
No 30
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.89 E-value=1.1e-07 Score=97.79 Aligned_cols=199 Identities=10% Similarity=-0.034 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhh
Q 002846 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (874)
Q Consensus 192 ~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~ 271 (874)
..|..+...+...|++++|+.+|+++.+.. +.+...+..+-.++. ..|+.++|...|.
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~----------~~~~~~~A~~~~~----------- 95 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQ----------TEMEPKLADEEYR----------- 95 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHH----------HTTCHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHH----------HcCCHHHHHHHHH-----------
Confidence 567788888999999999999999998653 234556666655555 5566666666663
Q ss_pred cCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCC-CeeeeccccHHHHHHhhhcCCCCcccccccccc
Q 002846 272 SRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS-NGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID 350 (874)
Q Consensus 272 ~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~P-d~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~ 350 (874)
++.... | +...+
T Consensus 96 -------------------------------------~a~~~~--~~~~~~~---------------------------- 108 (252)
T 2ho1_A 96 -------------------------------------KALASD--SRNARVL---------------------------- 108 (252)
T ss_dssp -------------------------------------HHHHHC--TTCHHHH----------------------------
T ss_pred -------------------------------------HHHHHC--cCcHHHH----------------------------
Confidence 332221 1 11122
Q ss_pred cCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHH
Q 002846 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429 (874)
Q Consensus 351 ~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~P-d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI 429 (874)
..+...|...|++++|.++|+++...+..| +...+..+...+...|++++|...+++..+.. ..+...|..+.
T Consensus 109 -----~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la 182 (252)
T 2ho1_A 109 -----NNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMA 182 (252)
T ss_dssp -----HHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHH
T ss_pred -----HHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHH
Confidence 444455566666777777776666533334 34566666677777777777777777666542 12355566666
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 430 ~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
..|...|+.++|..+++.+.+.. ..+...+..+...+...|+.++|..++.++...
T Consensus 183 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 183 DLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 77777777777777777766532 234556666667777777777777777777665
No 31
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.89 E-value=1.4e-07 Score=94.48 Aligned_cols=202 Identities=9% Similarity=-0.038 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhh
Q 002846 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG 270 (874)
Q Consensus 191 ~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~ 270 (874)
...|..+...+...|++++|+.+|+++.+.. +.+...|..+...+. ..|+.++|...+. +..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~----------~~~~~~~A~~~~~-------~a~ 69 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQ----------YLKVNDKAQESFR-------QAL 69 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----------HTTCHHHHHHHHH-------HHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH----------HcCChHHHHHHHH-------HHH
Confidence 4678888889999999999999999998653 234566666666666 5667777777764 222
Q ss_pred hcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccc
Q 002846 271 DSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID 350 (874)
Q Consensus 271 ~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~ 350 (874)
.. .-.+...|.
T Consensus 70 ~~-~~~~~~~~~-------------------------------------------------------------------- 80 (225)
T 2vq2_A 70 SI-KPDSAEINN-------------------------------------------------------------------- 80 (225)
T ss_dssp HH-CTTCHHHHH--------------------------------------------------------------------
T ss_pred Hh-CCCChHHHH--------------------------------------------------------------------
Confidence 21 111222333
Q ss_pred cCCccchHHHHHHhc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHH
Q 002846 351 NQDADEIRLSEDAKK-YAFQRGFEIYEKMCLDEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428 (874)
Q Consensus 351 ~~~~~n~lI~~~~k~-g~~~~A~~lf~~M~~~Gv~Pd-~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~L 428 (874)
.+...+... |++++|.++|+++...+..|+ ..++..+...+...|++++|...++++.+.. ..+...+..+
T Consensus 81 ------~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 153 (225)
T 2vq2_A 81 ------NYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKEL 153 (225)
T ss_dssp ------HHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred ------HHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHH
Confidence 334444555 555555555555554222222 4455555666666666666666666555432 1224455555
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 429 I~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
...|.+.|+.++|..+++.+.+..-..+...+..+...+...|+.+.|..++..+...
T Consensus 154 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 154 ARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 5566666666666666666555331134455555555556666666666666666543
No 32
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.88 E-value=3.5e-08 Score=107.89 Aligned_cols=258 Identities=9% Similarity=-0.071 Sum_probs=196.4
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 002846 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (874)
Q Consensus 159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (874)
...+.++.++|...|+.+.... +.+..+|..+...|.+.|++++|+..|+++.+.. +.+..+|..+..+|.
T Consensus 74 ~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~- 144 (365)
T 4eqf_A 74 KRLKEGDLPVTILFMEAAILQD-------PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT- 144 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH-
Confidence 5667899999999999996542 2345789999999999999999999999998753 345788888988888
Q ss_pred cccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCch----------hhhHhhhcCcccChhhhhcCChHHHHHHHH
Q 002846 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNN----------GQLDYGSSPMIDKLESNSSYRFDDLDSTFN 308 (874)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~----------vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~ 308 (874)
..|+.++|...|. ++... .-.+. ..++.+... +...|++++|..+|+
T Consensus 145 ---------~~g~~~~A~~~~~-------~al~~-~p~~~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~A~~~~~ 201 (365)
T 4eqf_A 145 ---------NTSHQQDACEALK-------NWIKQ-NPKYKYLVKNKKGSPGLTRRMSKS------PVDSSVLEGVKELYL 201 (365)
T ss_dssp ---------HTTCHHHHHHHHH-------HHHHH-CHHHHCC-------------------------CCHHHHHHHHHHH
T ss_pred ---------ccccHHHHHHHHH-------HHHHh-CccchHHHhhhccchHHHHHHHHH------HhhhhhHHHHHHHHH
Confidence 7899999999995 33321 10011 123334556 888999999999999
Q ss_pred HHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 002846 309 EKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEA 388 (874)
Q Consensus 309 eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~ 388 (874)
++.... |+.. +...| ..+...|.+.|++++|.+.|++..... +.+..
T Consensus 202 ~al~~~--p~~~-------------------~~~~~-----------~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 248 (365)
T 4eqf_A 202 EAAHQN--GDMI-------------------DPDLQ-----------TGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYS 248 (365)
T ss_dssp HHHHHS--CSSC-------------------CHHHH-----------HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHhC--cCcc-------------------CHHHH-----------HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 998763 3210 11222 777888999999999999999988753 44688
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcC---C--------CCCH
Q 002846 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG---V--------YPEE 457 (874)
Q Consensus 389 tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~G---v--------~Pd~ 457 (874)
+|+.+..+|...|++++|...|++..+.. +.+..+|..+-..|.+.|+.++|...|+.+.+.. . ..+.
T Consensus 249 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 327 (365)
T 4eqf_A 249 LWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISG 327 (365)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------C
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHH
Confidence 99999999999999999999999988762 2347788889999999999999999999987642 0 1136
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHH
Q 002846 458 PELEALLRVSVEAGKGDRVYYLLHK 482 (874)
Q Consensus 458 ~ty~~LI~~~~~~G~~d~A~~ll~~ 482 (874)
..|..|-.++...|+.+.|..+..+
T Consensus 328 ~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 328 NIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 7899999999999999988887654
No 33
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.79 E-value=9.8e-07 Score=101.10 Aligned_cols=261 Identities=10% Similarity=0.002 Sum_probs=196.6
Q ss_pred CChhHHHHHHHHHhhCCCCCCCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 002846 164 TNDSGQYKVRGITDEKGSKKSKKDRSE-----QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (874)
Q Consensus 164 ~~~~~A~~vf~eM~~~g~k~~~g~~Pd-----~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (874)
++..+|..+|+.+.... |+ .++ ..+|..+-..+...|++++|+..|+++... .|+...|..+-..+.
T Consensus 216 ~~~~~A~~~~~~~l~~~--p~---~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~- 287 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSAN--TV---DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLA- 287 (537)
T ss_dssp HHHHHHHHHHHHHHC----CC---CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHC--CC---cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHH-
Confidence 46788999999985422 11 111 235666777888999999999999999875 466777777777776
Q ss_pred cccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCC
Q 002846 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (874)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd 318 (874)
..|+.++|...|. +.... .-.+...|..+-.. +...|++++|...|++..... |+
T Consensus 288 ---------~~~~~~~A~~~~~-------~~~~~-~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~a~~~~--~~ 342 (537)
T 3fp2_A 288 ---------DKENSQEFFKFFQ-------KAVDL-NPEYPPTYYHRGQM------YFILQDYKNAKEDFQKAQSLN--PE 342 (537)
T ss_dssp ---------CSSCCHHHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHC--TT
T ss_pred ---------HhcCHHHHHHHHH-------HHhcc-CCCCHHHHHHHHHH------HHhcCCHHHHHHHHHHHHHhC--CC
Confidence 8899999999995 44332 22355668888888 999999999999999988753 22
Q ss_pred eeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 002846 319 GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAM 398 (874)
Q Consensus 319 ~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~ 398 (874)
. ...| ..+...+.+.|++++|.++|+++.... +.+..++..+...+.
T Consensus 343 ~---------------------~~~~-----------~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 389 (537)
T 3fp2_A 343 N---------------------VYPY-----------IQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILT 389 (537)
T ss_dssp C---------------------SHHH-----------HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred C---------------------HHHH-----------HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 1 1122 667788899999999999999998764 345678999999999
Q ss_pred hcCChhHHHHHHHHHHHCCCC-C----CcccHHHHHHHHHhC----------CChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 002846 399 SMGDGDMAFDMVKRMKSLGIN-P----RLRSYGPALSVFCNN----------GDVDKACSVEEHMLEHGVYPEEPELEAL 463 (874)
Q Consensus 399 ~~G~~d~A~~l~~~M~~~Gi~-P----d~~tYn~LI~a~~k~----------G~~~~A~~l~~eM~~~Gv~Pd~~ty~~L 463 (874)
..|++++|...|+++.+..-. + ....+..+-..|... |++++|...|+...+.. ..+...|..|
T Consensus 390 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l 468 (537)
T 3fp2_A 390 DRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGL 468 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 999999999999998765310 1 111133334566677 99999999999998754 2357888999
Q ss_pred HHHHHhcCCchHHHHHHHHHHhcCCCCChh
Q 002846 464 LRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (874)
Q Consensus 464 I~~~~~~G~~d~A~~ll~~M~~~~~~~sp~ 493 (874)
...|.+.|+.++|...|++.... .++..
T Consensus 469 ~~~~~~~g~~~~A~~~~~~al~~--~~~~~ 496 (537)
T 3fp2_A 469 AQLKLQMEKIDEAIELFEDSAIL--ARTMD 496 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--C--CH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh--CCCcH
Confidence 99999999999999999999887 44433
No 34
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.75 E-value=7.6e-07 Score=91.46 Aligned_cols=179 Identities=8% Similarity=-0.048 Sum_probs=140.4
Q ss_pred hhhcCChHHHHHHHHHHHHcCCCCC-eeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHH
Q 002846 294 SNSSYRFDDLDSTFNEKENLGQFSN-GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGF 372 (874)
Q Consensus 294 ~~~~g~~e~A~~lf~eM~~~Gi~Pd-~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~ 372 (874)
+...|++++|...|+++.... |+ ...+ ..+...+.+.|++++|.
T Consensus 47 ~~~~~~~~~A~~~~~~al~~~--~~~~~~~---------------------------------~~la~~~~~~~~~~~A~ 91 (252)
T 2ho1_A 47 YLQRGNTEQAKVPLRKALEID--PSSADAH---------------------------------AALAVVFQTEMEPKLAD 91 (252)
T ss_dssp HHHTTCTGGGHHHHHHHHHHC--TTCHHHH---------------------------------HHHHHHHHHTTCHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcC--CChHHHH---------------------------------HHHHHHHHHcCCHHHHH
Confidence 778888999999998887763 32 2233 66777889999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CcccHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 002846 373 EIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (874)
Q Consensus 373 ~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~P-d~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~ 451 (874)
++|+++.... +.+..+|..+...|...|++++|.++++++...+..| +...|..+...|...|++++|...|+...+.
T Consensus 92 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 170 (252)
T 2ho1_A 92 EEYRKALASD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL 170 (252)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9999988764 3478899999999999999999999999988744455 4567777888999999999999999998876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCC-hhHHHH-HHHHHhcchHHHhh
Q 002846 452 GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVS-PSTADV-IAKWFNSKEAARLG 511 (874)
Q Consensus 452 Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~s-p~T~~~-I~~~~~s~~~~~a~ 511 (874)
. ..+...+..|...+...|+.++|..+|.++... .+. +..+.. ..-+...+...++.
T Consensus 171 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~ 229 (252)
T 2ho1_A 171 N-RNQPSVALEMADLLYKEREYVPARQYYDLFAQG--GGQNARSLLLGIRLAKVFEDRDTAA 229 (252)
T ss_dssp C-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred C-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHccCHHHHH
Confidence 4 235788999999999999999999999999875 333 334444 34444455544443
No 35
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.75 E-value=7.6e-07 Score=89.00 Aligned_cols=175 Identities=9% Similarity=-0.019 Sum_probs=139.4
Q ss_pred hhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCC-eeeeccccHHHHHHhhhcCCCCcccccccccccCCccch
Q 002846 279 GQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN-GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEI 357 (874)
Q Consensus 279 vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd-~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~ 357 (874)
..|..+... +...|++++|...|.++.... |+ ...| ..
T Consensus 9 ~~~~~~~~~------~~~~~~~~~A~~~~~~~~~~~--~~~~~~~---------------------------------~~ 47 (225)
T 2vq2_A 9 NIKTQLAME------YMRGQDYRQATASIEDALKSD--PKNELAW---------------------------------LV 47 (225)
T ss_dssp HHHHHHHHH------HHHTTCHHHHHHHHHHHHHHC--TTCHHHH---------------------------------HH
T ss_pred HHHHHHHHH------HHHHhhHHHHHHHHHHHHHhC--ccchHHH---------------------------------HH
Confidence 345555555 888899999999999887753 33 2233 66
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhC
Q 002846 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM-GDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNN 435 (874)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~-G~~d~A~~l~~~M~~~Gi~Pd-~~tYn~LI~a~~k~ 435 (874)
+...+...|+.++|.++|+++.... +.+..++..+...+... |++++|..+++++.+.+..|+ ...|..+...|...
T Consensus 48 l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 126 (225)
T 2vq2_A 48 RAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQ 126 (225)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHc
Confidence 7778889999999999999988754 34678999999999999 999999999999988433343 56778888899999
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCC--ChhHHHHH
Q 002846 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKV--SPSTADVI 498 (874)
Q Consensus 436 G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~--sp~T~~~I 498 (874)
|+.++|...|+++.+.. ..+...+..+...+.+.|+.++|..+++++... .+ .+..+..+
T Consensus 127 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~ 188 (225)
T 2vq2_A 127 GQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSR--VEVLQADDLLLG 188 (225)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCCHHHHHHH
Confidence 99999999999998754 234788899999999999999999999998876 44 33455443
No 36
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.72 E-value=6e-08 Score=100.71 Aligned_cols=84 Identities=11% Similarity=-0.074 Sum_probs=59.9
Q ss_pred cCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccC
Q 002846 163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVG 242 (874)
Q Consensus 163 ~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~ 242 (874)
.++.++|...|+.+...... . .+.+...|..+...+...|++++|+..|+++.+.. +.+...|..+-..+.
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~--~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~----- 88 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRAL--T-DDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLT----- 88 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCC--C-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH-----
T ss_pred cchHHHHHHHHHHHHhcccc--c-CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHH-----
Confidence 45678899999998654210 0 01235678888899999999999999999998753 234667776666666
Q ss_pred CCcccCCCCHHHHHHHHh
Q 002846 243 VVKPAKSGSGMRTLDTFE 260 (874)
Q Consensus 243 ~~~~~k~G~~~~A~~vf~ 260 (874)
..|+.++|...|.
T Consensus 89 -----~~~~~~~A~~~~~ 101 (275)
T 1xnf_A 89 -----QAGNFDAAYEAFD 101 (275)
T ss_dssp -----HTTCHHHHHHHHH
T ss_pred -----HccCHHHHHHHHH
Confidence 5667777777764
No 37
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.62 E-value=8.2e-07 Score=92.03 Aligned_cols=222 Identities=9% Similarity=-0.095 Sum_probs=169.5
Q ss_pred HcCCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchh
Q 002846 203 KRGDVMGAIRLYDKAQREGIK---LGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNG 279 (874)
Q Consensus 203 k~G~~~~Al~lf~~M~~~Gi~---pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~v 279 (874)
..|++++|+..|+++.+.... .+..+|..+-.++. ..|+.++|...|. +.... .-.+..
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~~~~~~A~~~~~-------~al~~-~~~~~~ 78 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYD----------SLGLRALARNDFS-------QALAI-RPDMPE 78 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHH----------HTTCHHHHHHHHH-------HHHHH-CCCCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHH----------HcccHHHHHHHHH-------HHHHc-CCCcHH
Confidence 458899999999999976321 13566777777777 7899999999995 44433 333566
Q ss_pred hhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHH
Q 002846 280 QLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRL 359 (874)
Q Consensus 280 tyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI 359 (874)
.|..+-.. +...|++++|...|++..... |+. ...| ..+-
T Consensus 79 ~~~~la~~------~~~~~~~~~A~~~~~~al~~~--~~~---------------------~~~~-----------~~la 118 (275)
T 1xnf_A 79 VFNYLGIY------LTQAGNFDAAYEAFDSVLELD--PTY---------------------NYAH-----------LNRG 118 (275)
T ss_dssp HHHHHHHH------HHHTTCHHHHHHHHHHHHHHC--TTC---------------------THHH-----------HHHH
T ss_pred HHHHHHHH------HHHccCHHHHHHHHHHHHhcC--ccc---------------------cHHH-----------HHHH
Confidence 78888888 999999999999999988753 221 1222 6777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChh
Q 002846 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (874)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~ 439 (874)
..|.+.|++++|.+.|+++... .|+...+..++..+...|++++|...+++.... ..++...+. ++..+...++.+
T Consensus 119 ~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~ 194 (275)
T 1xnf_A 119 IALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK-SDKEQWGWN-IVEFYLGNISEQ 194 (275)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-SCCCSTHHH-HHHHHTTSSCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCcchHHHH-HHHHHHHhcCHH
Confidence 8899999999999999999875 355556666666777889999999999877765 234444444 777788888899
Q ss_pred HHHHHHHHHHHcCCC--C-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 440 KACSVEEHMLEHGVY--P-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 440 ~A~~l~~eM~~~Gv~--P-d~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
+|...+......... | +...|..+-..|.+.|+.++|...|++....
T Consensus 195 ~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 195 TLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 999999887654211 1 1577888999999999999999999999876
No 38
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.61 E-value=2.1e-05 Score=82.26 Aligned_cols=226 Identities=12% Similarity=-0.024 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhh
Q 002846 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG 270 (874)
Q Consensus 191 ~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~ 270 (874)
..++..+=..|.+.|++++|+..|.+..+.| +...+..|-..|.... ...++.++|...|. +..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~------~~~~~~~~A~~~~~-------~a~ 69 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQ------GVEKNLKKAASFYA-------KAC 69 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS------SSCCCHHHHHHHHH-------HHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC------CcCCCHHHHHHHHH-------HHH
Confidence 4566777778889999999999999999843 4456666666666210 02789999999995 333
Q ss_pred hcCCCCchhhhHhhhcCcccChhhhh----cCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccc
Q 002846 271 DSRDMDNNGQLDYGSSPMIDKLESNS----SYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKD 346 (874)
Q Consensus 271 ~~~gi~d~vtyn~LI~~~~~~~~~~~----~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~ 346 (874)
+. + +...+..+-.. |.. .+++++|...|++....+ +...+
T Consensus 70 ~~-~--~~~a~~~lg~~------~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~------------------------ 113 (273)
T 1ouv_A 70 DL-N--YSNGCHLLGNL------YYSGQGVSQNTNKALQYYSKACDLK---YAEGC------------------------ 113 (273)
T ss_dssp HT-T--CHHHHHHHHHH------HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH------------------------
T ss_pred HC-C--CHHHHHHHHHH------HhCCCCcccCHHHHHHHHHHHHHcC---CccHH------------------------
Confidence 32 2 44455555555 666 899999999999888775 22222
Q ss_pred cccccCCccchHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCC
Q 002846 347 WSIDNQDADEIRLSEDAK----KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS----MGDGDMAFDMVKRMKSLGI 418 (874)
Q Consensus 347 w~i~~~~~~n~lI~~~~k----~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~----~G~~d~A~~l~~~M~~~Gi 418 (874)
..+-..|.. .++.++|.+.|++..+.+ +...+..+-..|.. .++.++|...|++..+.+
T Consensus 114 ---------~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~- 180 (273)
T 1ouv_A 114 ---------ASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK- 180 (273)
T ss_dssp ---------HHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred ---------HHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-
Confidence 444455666 899999999999999876 67788888888888 999999999999988875
Q ss_pred CCCcccHHHHHHHHHh----CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCchHHHHHHHHHHhc
Q 002846 419 NPRLRSYGPALSVFCN----NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE----AGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 419 ~Pd~~tYn~LI~a~~k----~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~----~G~~d~A~~ll~~M~~~ 486 (874)
+...+..+-..|.. .++.++|...|+...+.+ | ...+..|-..|.+ .++.++|...|++..+.
T Consensus 181 --~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~-~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 181 --DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--N-GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp --CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC--C-HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 34666667778888 999999999999998875 3 6677777788888 89999999999998877
No 39
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.61 E-value=6.4e-07 Score=91.02 Aligned_cols=200 Identities=16% Similarity=0.084 Sum_probs=123.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhh
Q 002846 190 EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTEL 269 (874)
Q Consensus 190 d~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em 269 (874)
....|..+-..+.+.|++++|+.+|+++.+.. +.+...+..+-..+. ..|+.++|...|
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~----------~~~~~~~A~~~~---------- 80 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLS----------SVNELERALAFY---------- 80 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHH----------HTTCHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH----------HcCCHHHHHHHH----------
Confidence 34667777788889999999999999988632 224555555555555 455555555555
Q ss_pred hhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCC-eeeeccccHHHHHHhhhcCCCCcccccccc
Q 002846 270 GDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN-GHMKLNSQLLDGRSNLERGPDDQSRKKDWS 348 (874)
Q Consensus 270 ~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd-~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~ 348 (874)
++..... |+ ...+
T Consensus 81 --------------------------------------~~~~~~~--~~~~~~~-------------------------- 94 (243)
T 2q7f_A 81 --------------------------------------DKALELD--SSAATAY-------------------------- 94 (243)
T ss_dssp --------------------------------------HHHHHHC--TTCHHHH--------------------------
T ss_pred --------------------------------------HHHHHcC--CcchHHH--------------------------
Confidence 3333321 11 1112
Q ss_pred cccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHH
Q 002846 349 IDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428 (874)
Q Consensus 349 i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~L 428 (874)
..+...+...|++++|.++|+++.... +.+...+..+...+...|++++|..+++++.+.. ..+...+..+
T Consensus 95 -------~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 165 (243)
T 2q7f_A 95 -------YGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQF 165 (243)
T ss_dssp -------HHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred -------HHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHH
Confidence 445556667777788888777776643 3456677888888888888888888888877652 2346677777
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 429 I~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
...|.+.|+.++|...|+.+.... ..+...|..+...|...|+.++|...|+++...
T Consensus 166 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 166 GMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 788888888888888888877653 235677888888888888889998888888776
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.59 E-value=4.6e-06 Score=85.11 Aligned_cols=217 Identities=10% Similarity=0.030 Sum_probs=167.8
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCC----HHHHHHH
Q 002846 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREG--IKLG----QYHYNVL 232 (874)
Q Consensus 159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~G--i~pd----~~tyn~L 232 (874)
.....++.++|...|++..... . +...|..+-..|...|++++|+..|+++.... ..++ ...|..+
T Consensus 14 ~~~~~~~~~~A~~~~~~a~~~~--~------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 14 KFYKARQFDEAIEHYNKAWELH--K------DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--C------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhh--c------cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 4456789999999999987654 2 33789999999999999999999999988532 2233 4677777
Q ss_pred HHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHH
Q 002846 233 LYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKEN 312 (874)
Q Consensus 233 L~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~ 312 (874)
-..+. ..|+.++|...|. +.... . ++ -.. +...|++++|...++++..
T Consensus 86 ~~~~~----------~~~~~~~A~~~~~-------~a~~~-~-~~-------~~~------~~~~~~~~~a~~~~~~~~~ 133 (258)
T 3uq3_A 86 GNAYH----------KLGDLKKTIEYYQ-------KSLTE-H-RT-------ADI------LTKLRNAEKELKKAEAEAY 133 (258)
T ss_dssp HHHHH----------HTTCHHHHHHHHH-------HHHHH-C-CC-------HHH------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH----------HcccHHHHHHHHH-------HHHhc-C-ch-------hHH------HHHHhHHHHHHHHHHHHHH
Confidence 77777 7899999999995 33221 0 01 112 6677888999999988877
Q ss_pred cCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 002846 313 LGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTA 392 (874)
Q Consensus 313 ~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~ 392 (874)
.. |+.. ..| ..+-..+...|++++|.+.|++..... +.+..+|..
T Consensus 134 ~~--~~~~---------------------~~~-----------~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 178 (258)
T 3uq3_A 134 VN--PEKA---------------------EEA-----------RLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSN 178 (258)
T ss_dssp CC--HHHH---------------------HHH-----------HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cC--cchH---------------------HHH-----------HHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHH
Confidence 52 2111 112 566778889999999999999988754 346889999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 002846 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (874)
Q Consensus 393 LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~ 451 (874)
+...+...|++++|...|++..+.. +.+...|..+-..|.+.|+.++|...|+...+.
T Consensus 179 l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 179 RAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9999999999999999999988763 234677888889999999999999999987653
No 41
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.56 E-value=1.4e-06 Score=88.44 Aligned_cols=187 Identities=7% Similarity=-0.061 Sum_probs=133.2
Q ss_pred hhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCe-eeeccccHHHHHHhhhcCCCCcccccccccccCCccch
Q 002846 279 GQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG-HMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEI 357 (874)
Q Consensus 279 vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~-~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~ 357 (874)
..|..+-.. +...|++++|..+|+++... .|+. ..+ ..
T Consensus 24 ~~~~~~a~~------~~~~~~~~~A~~~~~~~l~~--~~~~~~~~---------------------------------~~ 62 (243)
T 2q7f_A 24 MTGGQQMGR------GSEFGDYEKAAEAFTKAIEE--NKEDAIPY---------------------------------IN 62 (243)
T ss_dssp ------------------------CCTTHHHHHTT--CTTCHHHH---------------------------------HH
T ss_pred HHHHHHHHH------HHHhhCHHHHHHHHHHHHHh--CcccHHHH---------------------------------HH
Confidence 345555555 78889999999999988774 3432 233 66
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCC
Q 002846 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (874)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~ 437 (874)
+...+.+.|++++|.+.|++..... +.+..++..+...+...|++++|..+++++.+.. ..+...|..+...|.+.|+
T Consensus 63 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~ 140 (243)
T 2q7f_A 63 FANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQ 140 (243)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcc
Confidence 6778889999999999999988764 3478899999999999999999999999988763 2456778888899999999
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCC-hhHHHH-HHHHHhcchHHHhh
Q 002846 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVS-PSTADV-IAKWFNSKEAARLG 511 (874)
Q Consensus 438 ~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~s-p~T~~~-I~~~~~s~~~~~a~ 511 (874)
.++|..+++.+.+.. ..+...+..+...+.+.|++++|..+|.++... .+. +.++.. ...+...+...++.
T Consensus 141 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~ 213 (243)
T 2q7f_A 141 PKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ--DPGHADAFYNAGVTYAYKENREKAL 213 (243)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTHHH
T ss_pred HHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHccCHHHHH
Confidence 999999999988753 236788889999999999999999999998876 333 334444 44555555544443
No 42
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.54 E-value=9.9e-07 Score=92.87 Aligned_cols=245 Identities=8% Similarity=-0.045 Sum_probs=138.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhc
Q 002846 190 EQFQLRVELDMCSKRGDVMGAIRLYDKAQRE-------GIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVS 262 (874)
Q Consensus 190 d~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~-------Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~ 262 (874)
+..+|..+-..+...|++++|+.+|+++.+. .-......+..+-..|. ..|+.++|...+.
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~----------~~g~~~~A~~~~~-- 93 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYR----------DQNKYKDAANLLN-- 93 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHH----------HTTCHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH----------HCCCHHHHHHHHH--
Confidence 3467888899999999999999999999863 22333455666666666 6788888888885
Q ss_pred ccCchhhhhc------CCCC-chhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhh
Q 002846 263 TMNSTELGDS------RDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLE 335 (874)
Q Consensus 263 ~~~s~em~~~------~gi~-d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~ 335 (874)
+.... ..-+ ....|..+-.. +...|++++|...|.+..... .
T Consensus 94 -----~al~~~~~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~A~~~~~~a~~~~--------------------~ 142 (311)
T 3nf1_A 94 -----DALAIREKTLGKDHPAVAATLNNLAVL------YGKRGKYKEAEPLCKRALEIR--------------------E 142 (311)
T ss_dssp -----HHHHHHHHHHCTTCHHHHHHHHHHHHH------HHTTTCHHHHHHHHHHHHHHH--------------------H
T ss_pred -----HHHHHHHHHhCCCChHHHHHHHHHHHH------HHHcCcHHHHHHHHHHHHHHH--------------------H
Confidence 22111 0111 23446666666 777777888877777665431 0
Q ss_pred cC-CCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCChhHHH
Q 002846 336 RG-PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD------EVPM-NEASLTAVGRMAMSMGDGDMAF 407 (874)
Q Consensus 336 ~m-~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~------Gv~P-d~~tyn~LI~~~~~~G~~d~A~ 407 (874)
.. .++.... ......+-..+...|++++|.++|+++... +-.| ...++..+...|...|++++|.
T Consensus 143 ~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 215 (311)
T 3nf1_A 143 KVLGKDHPDV-------AKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAE 215 (311)
T ss_dssp HHHCTTCHHH-------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HhcCCCChHH-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 00 0000000 001122334556677777777777776653 1122 2346677777777777777777
Q ss_pred HHHHHHHHC-------CCCCCcccHHHHHHHHHh-------CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCc
Q 002846 408 DMVKRMKSL-------GINPRLRSYGPALSVFCN-------NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG 473 (874)
Q Consensus 408 ~l~~~M~~~-------Gi~Pd~~tYn~LI~a~~k-------~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~ 473 (874)
..++++... ...|........+..+.. .+.+.+|...+....... ..+..+|..|...|.+.|++
T Consensus 216 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~ 294 (311)
T 3nf1_A 216 TLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKF 294 (311)
T ss_dssp HHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCH
Confidence 777776642 122332222222222222 233344444444433211 22445677888888899999
Q ss_pred hHHHHHHHHHHh
Q 002846 474 DRVYYLLHKLRT 485 (874)
Q Consensus 474 d~A~~ll~~M~~ 485 (874)
++|..+|++..+
T Consensus 295 ~~A~~~~~~al~ 306 (311)
T 3nf1_A 295 EAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
No 43
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.47 E-value=2.5e-05 Score=83.88 Aligned_cols=227 Identities=10% Similarity=0.007 Sum_probs=164.6
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCH-------HHHHHHHhhcccCchhhhhcCCCCchhh
Q 002846 208 MGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSG-------MRTLDTFEVSTMNSTELGDSRDMDNNGQ 280 (874)
Q Consensus 208 ~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~-------~~A~~vf~v~~~~s~em~~~~gi~d~vt 280 (874)
++|+.+|+++.... +-+...|..+...+...+. ...+.|++ ++|..+|. .......-.+...
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~---~l~~~g~~~~~~~~~~~A~~~~~-------rAl~~~~p~~~~~ 101 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSK---LLAEKGDMNNAKLFSDEAANIYE-------RAISTLLKKNMLL 101 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHH---HHHHTSCCHHHHHHHHHHHHHHH-------HHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhch---hhhhccchhhcccchHHHHHHHH-------HHHHHhCcccHHH
Confidence 68889999998642 3455677766666542100 00023564 88999985 3332101124556
Q ss_pred hHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHH
Q 002846 281 LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLS 360 (874)
Q Consensus 281 yn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~ 360 (874)
|..+... +.+.|++++|..+|++.... .|+... ..| ..+..
T Consensus 102 ~~~~~~~------~~~~~~~~~A~~~~~~al~~--~p~~~~--------------------~~~-----------~~~~~ 142 (308)
T 2ond_A 102 YFAYADY------EESRMKYEKVHSIYNRLLAI--EDIDPT--------------------LVY-----------IQYMK 142 (308)
T ss_dssp HHHHHHH------HHHTTCHHHHHHHHHHHHTS--SSSCTH--------------------HHH-----------HHHHH
T ss_pred HHHHHHH------HHhcCCHHHHHHHHHHHHhc--cccCcc--------------------HHH-----------HHHHH
Confidence 8888888 88999999999999998874 443321 023 67777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChh
Q 002846 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAM-SMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (874)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~-~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~ 439 (874)
.+.+.|++++|..+|++..... +++...|........ ..|+.++|..+|++..+.. .-+...|..++..+.+.|+.+
T Consensus 143 ~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~ 220 (308)
T 2ond_A 143 FARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDN 220 (308)
T ss_dssp HHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHH
Confidence 8888999999999999998764 234455554444432 3699999999999887652 234677888888999999999
Q ss_pred HHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 440 KACSVEEHMLEHG-VYP--EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 440 ~A~~l~~eM~~~G-v~P--d~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
+|..+|+...... +.| ....|..++..+.+.|+.++|..++.++.+.
T Consensus 221 ~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 221 NTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999873 455 4678999999999999999999999999876
No 44
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.46 E-value=3.2e-06 Score=86.25 Aligned_cols=210 Identities=13% Similarity=0.012 Sum_probs=123.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchh
Q 002846 189 SEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTE 268 (874)
Q Consensus 189 Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~e 268 (874)
++...+..+-..+.+.|++++|+..|++..+.. +-+...|..+-.++. +.|+.++|...|. .
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~----------~~g~~~~A~~~~~-------~ 64 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQL----------KLGLVNPALENGK-------T 64 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHH----------HTTCHHHHHHHHH-------H
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH----------HcCCHHHHHHHHH-------H
Confidence 444678888889999999999999999998643 234566666666777 7899999999995 3
Q ss_pred hhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccc
Q 002846 269 LGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWS 348 (874)
Q Consensus 269 m~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~ 348 (874)
.... .-.+...|..+-.. +... .... +
T Consensus 65 al~~-~P~~~~a~~~lg~~------~~~~-------------~~~~--~------------------------------- 91 (217)
T 2pl2_A 65 LVAR-TPRYLGGYMVLSEA------YVAL-------------YRQA--E------------------------------- 91 (217)
T ss_dssp HHHH-CTTCHHHHHHHHHH------HHHH-------------HHTC--S-------------------------------
T ss_pred HHHh-CCCcHHHHHHHHHH------HHHh-------------hhhh--h-------------------------------
Confidence 3322 11233344444333 3222 0000 0
Q ss_pred cccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHH
Q 002846 349 IDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428 (874)
Q Consensus 349 i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~L 428 (874)
. .+...|++++|...|++..+.. +-+...|..+-..+...|++++|...|++..+.. .+...+..+
T Consensus 92 -------~----~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 92 -------D----RERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp -------S----HHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred -------h----hcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 0 1123456666666666665532 2245666777777777777777777777776665 566666667
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 002846 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (874)
Q Consensus 429 I~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~ 484 (874)
-..|...|+.++|...|+...+.. +-+...+..+-..+...|+.++|...|++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 777777777777777777776643 1245666667777777777777777776654
No 45
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.45 E-value=4.3e-06 Score=85.28 Aligned_cols=200 Identities=12% Similarity=-0.042 Sum_probs=132.4
Q ss_pred CCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHH
Q 002846 223 KLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDD 302 (874)
Q Consensus 223 ~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~ 302 (874)
+++...+..+-..+. ..|+.++|...|. +.... .-.+...|..+-.. +.+.|++++
T Consensus 2 p~~~~~~~~lg~~~~----------~~g~~~~A~~~~~-------~al~~-~p~~~~a~~~lg~~------~~~~g~~~~ 57 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLY----------ALGRYDAALTLFE-------RALKE-NPQDPEALYWLART------QLKLGLVNP 57 (217)
T ss_dssp --CCHHHHHHHHHHH----------HTTCHHHHHHHHH-------HHHTT-SSSCHHHHHHHHHH------HHHTTCHHH
T ss_pred CCcHHHHHHHHHHHH----------HcCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHcCCHHH
Confidence 345566666666666 7799999999995 33332 22355667777777 889999999
Q ss_pred HHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002846 303 LDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDE 382 (874)
Q Consensus 303 A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~G 382 (874)
|...|++..... |+.... | ..+-..+.+ +....
T Consensus 58 A~~~~~~al~~~--P~~~~a---------------------~-----------~~lg~~~~~-------------~~~~~ 90 (217)
T 2pl2_A 58 ALENGKTLVART--PRYLGG---------------------Y-----------MVLSEAYVA-------------LYRQA 90 (217)
T ss_dssp HHHHHHHHHHHC--TTCHHH---------------------H-----------HHHHHHHHH-------------HHHTC
T ss_pred HHHHHHHHHHhC--CCcHHH---------------------H-----------HHHHHHHHH-------------hhhhh
Confidence 999999887753 332111 1 111111111 11111
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHH
Q 002846 383 VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELE 461 (874)
Q Consensus 383 v~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd-~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~ 461 (874)
.+ .+...|++++|...|++..+. .|+ ...|..+=..|...|+.++|...|+...+.. .+...+.
T Consensus 91 --~~---------~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 155 (217)
T 2pl2_A 91 --ED---------RERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS 155 (217)
T ss_dssp --SS---------HHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred --hh---------hcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence 11 123468999999999998875 454 5667777788899999999999999999887 7889999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhcCCCCChh-HHHH-HHHHHhcchHHHh
Q 002846 462 ALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS-TADV-IAKWFNSKEAARL 510 (874)
Q Consensus 462 ~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~-T~~~-I~~~~~s~~~~~a 510 (874)
.|-..|...|++++|...|++.... .|... .+.. ...+...+...++
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A 204 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEA 204 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHH
Confidence 9999999999999999999999886 44433 4433 3333344444333
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.39 E-value=2.7e-05 Score=80.57 Aligned_cols=128 Identities=11% Similarity=-0.088 Sum_probs=94.2
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHHh
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCN 434 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd-~~tYn~LI~a~~k 434 (874)
..+-..|...|++++|.+.|++..... +-+..+|..+...+...+++++|...|++..+. .|+ ...|..+-..+..
T Consensus 112 ~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 188 (272)
T 3u4t_A 112 GQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAA 188 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHH
Confidence 566677888899999999998877652 335666766663445556999999999988775 344 4566666677777
Q ss_pred CCC---hhHHHHHHHHHHHcC-CCCC------HHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 435 NGD---VDKACSVEEHMLEHG-VYPE------EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 435 ~G~---~~~A~~l~~eM~~~G-v~Pd------~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
.|+ .++|...+++..+.. -.|+ ...|..|-..|.+.|+.++|...|++..+.
T Consensus 189 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 189 QDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp HSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 777 777888888776541 1233 256777888889999999999999998876
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.30 E-value=0.00015 Score=75.66 Aligned_cols=217 Identities=13% Similarity=-0.000 Sum_probs=165.4
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002846 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSK----RGDVMGAIRLYDKAQREGIKLGQYHYNVLLYL 235 (874)
Q Consensus 160 ~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k----~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a 235 (874)
....++..+|...|+...+.+ +...+..+-..|.. .|++++|+..|++..+.+ +...+..|=..
T Consensus 16 ~~~~~~~~~A~~~~~~a~~~~---------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 83 (273)
T 1ouv_A 16 SYKEKDFTQAKKYFEKACDLK---------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNL 83 (273)
T ss_dssp HHHTTCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 345678999999999986521 23677777788888 999999999999999887 66777777777
Q ss_pred HHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhh----cCChHHHHHHHHHHH
Q 002846 236 CSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNS----SYRFDDLDSTFNEKE 311 (874)
Q Consensus 236 ~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~----~g~~e~A~~lf~eM~ 311 (874)
|.... ...++.++|...|. ...+. + +...+..+-.. |.. .+++++|...|++..
T Consensus 84 ~~~g~------~~~~~~~~A~~~~~-------~a~~~-~--~~~a~~~lg~~------~~~~~~~~~~~~~A~~~~~~a~ 141 (273)
T 1ouv_A 84 YYSGQ------GVSQNTNKALQYYS-------KACDL-K--YAEGCASLGGI------YHDGKVVTRDFKKAVEYFTKAC 141 (273)
T ss_dssp HHHTS------SSCCCHHHHHHHHH-------HHHHT-T--CHHHHHHHHHH------HHHCSSSCCCHHHHHHHHHHHH
T ss_pred HhCCC------CcccCHHHHHHHHH-------HHHHc-C--CccHHHHHHHH------HHcCCCcccCHHHHHHHHHHHH
Confidence 76210 02799999999995 33332 2 44455555555 666 899999999999988
Q ss_pred HcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCH
Q 002846 312 NLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAK----KYAFQRGFEIYEKMCLDEVPMNE 387 (874)
Q Consensus 312 ~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k----~g~~~~A~~lf~~M~~~Gv~Pd~ 387 (874)
+.+ +...+ ..+-..|.. .++.++|.+.|++..+.+ +.
T Consensus 142 ~~~---~~~a~---------------------------------~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~ 182 (273)
T 1ouv_A 142 DLN---DGDGC---------------------------------TILGSLYDAGRGTPKDLKKALASYDKACDLK---DS 182 (273)
T ss_dssp HTT---CHHHH---------------------------------HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred hcC---cHHHH---------------------------------HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 875 22222 334444555 889999999999998876 56
Q ss_pred HHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHh----CCChhHHHHHHHHHHHcC
Q 002846 388 ASLTAVGRMAMS----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN----NGDVDKACSVEEHMLEHG 452 (874)
Q Consensus 388 ~tyn~LI~~~~~----~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k----~G~~~~A~~l~~eM~~~G 452 (874)
..+..|-..|.. .++.++|...|++..+.+- ...+..+-..|.+ .++.++|.+.|+...+.|
T Consensus 183 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 183 PGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 788889999999 9999999999999888753 4566667777888 899999999999988765
No 48
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.30 E-value=2e-05 Score=75.65 Aligned_cols=156 Identities=15% Similarity=0.059 Sum_probs=123.3
Q ss_pred hhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHH
Q 002846 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (874)
Q Consensus 294 ~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~ 373 (874)
+...|++++|...|+++.... |+ +...+ ..+...+...|++++|.+
T Consensus 18 ~~~~~~~~~A~~~~~~~~~~~--~~---------------------~~~~~-----------~~~~~~~~~~~~~~~A~~ 63 (186)
T 3as5_A 18 HAKAGRYSQAVMLLEQVYDAD--AF---------------------DVDVA-----------LHLGIAYVKTGAVDRGTE 63 (186)
T ss_dssp HHHHTCHHHHHHHHTTTCCTT--SC---------------------CHHHH-----------HHHHHHHHHTTCHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC--cc---------------------ChHHH-----------HHHHHHHHHcCCHHHHHH
Confidence 667788888888777664431 21 11222 666778889999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 002846 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGV 453 (874)
Q Consensus 374 lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv 453 (874)
+|+++.... +.+..++..+...+...|++++|.++++++.... ..+...+..+...|...|+.++|..+++......
T Consensus 64 ~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~- 140 (186)
T 3as5_A 64 LLERSLADA-PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR- 140 (186)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-
Confidence 999988753 3467888999999999999999999999987762 3456777778888999999999999999988764
Q ss_pred CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 454 YPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 454 ~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
..+...+..+...+...|+.++|...+.+....
T Consensus 141 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 141 PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 345788888999999999999999999887664
No 49
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.28 E-value=1.7e-05 Score=71.52 Aligned_cols=128 Identities=16% Similarity=0.121 Sum_probs=109.9
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhC
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~ 435 (874)
..+...+...|++++|..+|+++.... +.+..++..+...+...|++++|..+++++...+ ..+...+..+...+...
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHh
Confidence 566778889999999999999998754 3467889999999999999999999999988763 23566788888999999
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 436 G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
|++++|..+++.+.... ..+...+..+...+.+.|+.++|...|.++...
T Consensus 83 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 99999999999998754 235778889999999999999999999998765
No 50
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.27 E-value=6.3e-06 Score=86.90 Aligned_cols=274 Identities=11% Similarity=-0.038 Sum_probs=185.0
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHH
Q 002846 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSE--QFQLRVELDMCSKRGDVMGAIRLYDKAQRE----GIKLG-QYHYNV 231 (874)
Q Consensus 159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd--~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~----Gi~pd-~~tyn~ 231 (874)
.....++.++|...|++..... ++ .|. ...|..+-..+...|++++|+..|++.... +-.|. ...+..
T Consensus 14 ~~~~~g~~~~A~~~~~~al~~~--~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 14 RLCKSGDCRAGVSFFEAAVQVG--TE---DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CS---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhhC--cc---cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 5567899999999999986642 11 111 357888889999999999999999987632 22222 345555
Q ss_pred HHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCC--chhhhHhhhcCcccChhhhhcCC----------
Q 002846 232 LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYR---------- 299 (874)
Q Consensus 232 LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~--d~vtyn~LI~~~~~~~~~~~~g~---------- 299 (874)
+-..+. ..|+.++|...+.-. .++....+-. ...+|..+-.. +...|+
T Consensus 89 l~~~~~----------~~g~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~ 148 (338)
T 3ro2_A 89 LGNTLK----------VLGNFDEAIVCCQRH----LDISRELNDKVGEARALYNLGNV------YHAKGKSFGCPGPQDT 148 (338)
T ss_dssp HHHHHH----------HTTCHHHHHHHHHHH----HHHHHHTTCHHHHHHHHHHHHHH------HHHHHHTSSSSSCC--
T ss_pred HHHHHH----------HccCHHHHHHHHHHH----HHHHHHhcCchHHHHHHHHHHHH------HHHcCcccccchhhhh
Confidence 556666 779999999998511 1121111111 12246666666 777788
Q ss_pred ----------hHHHHHHHHHHHHcCCC-CCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCH
Q 002846 300 ----------FDDLDSTFNEKENLGQF-SNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAF 368 (874)
Q Consensus 300 ----------~e~A~~lf~eM~~~Gi~-Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~ 368 (874)
+++|...+.+....--. ++. ... ...+ ..+-..+...|++
T Consensus 149 ~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~-------~~~-----------~~~~-----------~~l~~~~~~~~~~ 199 (338)
T 3ro2_A 149 GEFPEDVRNALQAAVDLYEENLSLVTALGDR-------AAQ-----------GRAF-----------GNLGNTHYLLGNF 199 (338)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHTCH-------HHH-----------HHHH-----------HHHHHHHHHHTCH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhcCCH-------HHH-----------HHHH-----------HHHHHHHHHhCCH
Confidence 78888777765432000 000 000 1122 5566778889999
Q ss_pred HHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----cccHHHHHHHHHhCCCh
Q 002846 369 QRGFEIYEKMCLD----EVP-MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI-NPR----LRSYGPALSVFCNNGDV 438 (874)
Q Consensus 369 ~~A~~lf~~M~~~----Gv~-Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi-~Pd----~~tYn~LI~a~~k~G~~ 438 (874)
++|.+.|++.... +-. ....++..+...+...|++++|...+++.....- .++ ..++..+-..|...|+.
T Consensus 200 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 279 (338)
T 3ro2_A 200 RDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDY 279 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCH
Confidence 9999999887642 111 1134788899999999999999999988764310 011 45677788889999999
Q ss_pred hHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 439 DKACSVEEHMLEH----GVY-PEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 439 ~~A~~l~~eM~~~----Gv~-Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
++|...++..... +-. ....++..|-..|.+.|+.++|...+++....
T Consensus 280 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 280 EKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999887643 111 11446778888899999999999999988765
No 51
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.26 E-value=0.00012 Score=84.69 Aligned_cols=302 Identities=10% Similarity=-0.023 Sum_probs=182.7
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Q 002846 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAA 240 (874)
Q Consensus 161 ~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~ 240 (874)
.+.++...|..+|+.+... .+-+...|...+..+.+.|++++|..+|+++.... |+...|...+.....
T Consensus 23 ~~~~~~~~a~~~~e~al~~-------~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~-- 91 (530)
T 2ooe_A 23 AQNQPIDKARKTYERLVAQ-------FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRE-- 91 (530)
T ss_dssp HHSSCHHHHHHHHHHHHTT-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHH--
T ss_pred HHhCCHHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHH--
Confidence 4678999999999999542 22345789999999999999999999999998653 787777766653321
Q ss_pred cCCCcccCCCCHHHHHH----HHhhcccCchhhhhcCCCC--chhhhHhhhcC---cccChhhhhcCChHHHHHHHHHHH
Q 002846 241 VGVVKPAKSGSGMRTLD----TFEVSTMNSTELGDSRDMD--NNGQLDYGSSP---MIDKLESNSSYRFDDLDSTFNEKE 311 (874)
Q Consensus 241 ~~~~~~~k~G~~~~A~~----vf~v~~~~s~em~~~~gi~--d~vtyn~LI~~---~~~~~~~~~~g~~e~A~~lf~eM~ 311 (874)
..|+.+.|.+ +|. ......|.. +...|...+.- ......+...|+++.|..+|++..
T Consensus 92 -------~~~~~~~a~~~~~~~~~-------~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 92 -------TKGKLPSYKEKMAQAYD-------FALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp -------HTTTSTTHHHHHHHHHH-------HHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred -------HccchhhHHHHHHHHHH-------HHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 2344444443 443 222222332 33345544433 000000123567777777777766
Q ss_pred HcCCCCCe---eeec---------------------cccHHHHHHhhhc--------------CCCCc--------cccc
Q 002846 312 NLGQFSNG---HMKL---------------------NSQLLDGRSNLER--------------GPDDQ--------SRKK 345 (874)
Q Consensus 312 ~~Gi~Pd~---~ty~---------------------~g~~~eA~~l~~~--------------m~pd~--------~ty~ 345 (874)
.. |+. ..|. .++..+|..++.+ +.|+. ..|.
T Consensus 158 ~~---P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~ 234 (530)
T 2ooe_A 158 VN---PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWK 234 (530)
T ss_dssp TS---CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHH
T ss_pred hc---hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHH
Confidence 52 321 1111 1122233322221 01110 0110
Q ss_pred cc---cccc----CC---------------------cc---chHHHHHHh-------cCCHH-------HHHHHHHHHHH
Q 002846 346 DW---SIDN----QD---------------------AD---EIRLSEDAK-------KYAFQ-------RGFEIYEKMCL 380 (874)
Q Consensus 346 ~w---~i~~----~~---------------------~~---n~lI~~~~k-------~g~~~-------~A~~lf~~M~~ 380 (874)
.| .... +. .. ......+.+ .|+++ +|..+|++-..
T Consensus 235 ~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~ 314 (530)
T 2ooe_A 235 KYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS 314 (530)
T ss_dssp HHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHH
Confidence 00 0000 00 00 112222332 58876 89999998875
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc--ccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-H
Q 002846 381 DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL--RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-E 457 (874)
Q Consensus 381 ~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~--~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd-~ 457 (874)
.-.+-+...|..++..+.+.|++++|..+|++..+. .|+. ..|..+...+.+.|+.++|.++|+...+.. |+ .
T Consensus 315 ~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--~~~~ 390 (530)
T 2ooe_A 315 TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRH 390 (530)
T ss_dssp TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--TCCT
T ss_pred HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--CCch
Confidence 323346889999999999999999999999999875 5653 478888888889999999999999988753 32 2
Q ss_pred HHHH--HHHHHHHhcCCchHHHHHHHHHHhcCCCC-ChhHHHH
Q 002846 458 PELE--ALLRVSVEAGKGDRVYYLLHKLRTSVRKV-SPSTADV 497 (874)
Q Consensus 458 ~ty~--~LI~~~~~~G~~d~A~~ll~~M~~~~~~~-sp~T~~~ 497 (874)
..|. +++. +...|+.++|..+|++..+. .| .+..+..
T Consensus 391 ~~~~~~a~~~-~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~ 430 (530)
T 2ooe_A 391 HVYVTAALME-YYCSKDKSVAFKIFELGLKK--YGDIPEYVLA 430 (530)
T ss_dssp HHHHHHHHHH-HHHTCCHHHHHHHHHHHHHH--HTTCHHHHHH
T ss_pred HHHHHHHHHH-HHHcCChhHHHHHHHHHHHH--CCCCHHHHHH
Confidence 2232 2222 23589999999999988776 34 3445544
No 52
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.24 E-value=7e-05 Score=80.39 Aligned_cols=219 Identities=10% Similarity=-0.047 Sum_probs=161.1
Q ss_pred hHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHH-------HcCCH-------HHHHHHHHHHHHcCCCC-CHHHHHH
Q 002846 167 SGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCS-------KRGDV-------MGAIRLYDKAQREGIKL-GQYHYNV 231 (874)
Q Consensus 167 ~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~-------k~G~~-------~~Al~lf~~M~~~Gi~p-d~~tyn~ 231 (874)
..|..+|+...... +-+...|..+...+. +.|++ ++|..+|++.... +.| +...|..
T Consensus 33 ~~a~~~~~~al~~~-------p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~ 104 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFA 104 (308)
T ss_dssp HHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHH
T ss_pred HHHHHHHHHHHHHc-------CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHH
Confidence 57888888875421 123467777776665 45886 8999999999863 245 4557888
Q ss_pred HHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCch-hhhHhhhcCcccChhhhhcCChHHHHHHHHHH
Q 002846 232 LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNN-GQLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310 (874)
Q Consensus 232 LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~-vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM 310 (874)
+...+. +.|++++|..+|. ..... .-.+. ..|..+... +.+.|++++|..+|++.
T Consensus 105 ~~~~~~----------~~~~~~~A~~~~~-------~al~~-~p~~~~~~~~~~~~~------~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 105 YADYEE----------SRMKYEKVHSIYN-------RLLAI-EDIDPTLVYIQYMKF------ARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHH----------HTTCHHHHHHHHH-------HHHTS-SSSCTHHHHHHHHHH------HHHHHCHHHHHHHHHHH
T ss_pred HHHHHH----------hcCCHHHHHHHHH-------HHHhc-cccCccHHHHHHHHH------HHHhcCHHHHHHHHHHH
Confidence 888888 7799999999995 43332 11133 378888888 88999999999999988
Q ss_pred HHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 002846 311 ENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSE-DAKKYAFQRGFEIYEKMCLDEVPMNEAS 389 (874)
Q Consensus 311 ~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~-~~k~g~~~~A~~lf~~M~~~Gv~Pd~~t 389 (874)
.... |+.... | ...... +...|+.++|..+|+...+.. +-+...
T Consensus 161 ~~~~--p~~~~~---------------------~-----------~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 205 (308)
T 2ond_A 161 REDA--RTRHHV---------------------Y-----------VTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEY 205 (308)
T ss_dssp HTST--TCCTHH---------------------H-----------HHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHH
T ss_pred HhcC--CCCHHH---------------------H-----------HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHH
Confidence 7753 221100 1 111111 123699999999999887642 236788
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCC--cccHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 002846 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLG-INPR--LRSYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (874)
Q Consensus 390 yn~LI~~~~~~G~~d~A~~l~~~M~~~G-i~Pd--~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~G 452 (874)
|..++..+.+.|++++|..+|++..... +.|+ ...|..++..+.+.|+.+.|..+++.+.+..
T Consensus 206 ~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 206 VLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999873 5553 5578888898999999999999999988743
No 53
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.22 E-value=9e-06 Score=88.97 Aligned_cols=266 Identities=12% Similarity=0.034 Sum_probs=182.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcc
Q 002846 188 RSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG----QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVST 263 (874)
Q Consensus 188 ~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd----~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~ 263 (874)
.+....+..+=..+.+.|++++|+.+|+++.+.+- .+ ...|..+-..+. ..|++++|...+.-.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~----------~~g~~~~A~~~~~~a- 73 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYF----------YLHDYAKALEYHHHD- 73 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHH----------HTTCHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHH----------HhcCHHHHHHHHHHH-
Confidence 34456666777788999999999999999987631 23 245666666666 779999999998511
Q ss_pred cCchhhhhcCCCC--chhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCC-CC----eeeec--------ccc--
Q 002846 264 MNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQF-SN----GHMKL--------NSQ-- 326 (874)
Q Consensus 264 ~~s~em~~~~gi~--d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~-Pd----~~ty~--------~g~-- 326 (874)
-++....+-. ....|..+-.. +...|++++|...|.+.....-. ++ ...+. .|+
T Consensus 74 ---l~~~~~~~~~~~~~~~~~~la~~------~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 144 (406)
T 3sf4_A 74 ---LTLARTIGDQLGEAKASGNLGNT------LKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSF 144 (406)
T ss_dssp ---HHHHHHTTCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ---HHHHHhccccHHHHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcc
Confidence 1122211111 23447777777 88999999999999877653110 11 11121 667
Q ss_pred ------------------HHHHHHhhhcC------CCC----cccccccccccCCccchHHHHHHhcCCHHHHHHHHHHH
Q 002846 327 ------------------LLDGRSNLERG------PDD----QSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKM 378 (874)
Q Consensus 327 ------------------~~eA~~l~~~m------~pd----~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M 378 (874)
..+|...+.+. .++ ...| ..+-..|...|++++|.+.|++.
T Consensus 145 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~-----------~~la~~~~~~g~~~~A~~~~~~a 213 (406)
T 3sf4_A 145 GCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAF-----------GNLGNTHYLLGNFRDAVIAHEQR 213 (406)
T ss_dssp C-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-----------HHHHHHHHHHTBHHHHHHHHHHH
T ss_pred cccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHH-----------HHHHHHHHHccCHHHHHHHHHHH
Confidence 78888777664 111 1233 55667788899999999999887
Q ss_pred HHCCC-CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC-cccHHHHHHHHHhCCChhHHHHHHHHH
Q 002846 379 CLDEV-PMN----EASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINPR-LRSYGPALSVFCNNGDVDKACSVEEHM 448 (874)
Q Consensus 379 ~~~Gv-~Pd----~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~----Gi~Pd-~~tYn~LI~a~~k~G~~~~A~~l~~eM 448 (874)
....- .++ ..+|..+...|...|++++|...+++.... +-.+. ..+|..+-..|...|++++|...+++.
T Consensus 214 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 293 (406)
T 3sf4_A 214 LLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 64210 122 347888999999999999999999887643 11111 457777888899999999999999887
Q ss_pred HHcCC-CCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 002846 449 LEHGV-YPE----EPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (874)
Q Consensus 449 ~~~Gv-~Pd----~~ty~~LI~~~~~~G~~d~A~~ll~~M~~ 485 (874)
.+..- ..+ ...+..+-..|...|++++|...+.+...
T Consensus 294 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 65311 112 55677888888999999999999988654
No 54
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.19 E-value=9.7e-05 Score=82.75 Aligned_cols=231 Identities=8% Similarity=-0.044 Sum_probs=173.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCC-HHHHHHHHhhcccCchhhh
Q 002846 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGS-GMRTLDTFEVSTMNSTELG 270 (874)
Q Consensus 192 ~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~-~~~A~~vf~v~~~~s~em~ 270 (874)
..|+.+-..+.+.|++++|+..|++..... +-+...|+.+-.++. ..|+ +++|+..|. +..
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~----------~~g~d~~eAl~~~~-------~al 159 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLK----------SLQKDLHEEMNYIT-------AII 159 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----------HTTCCHHHHHHHHH-------HHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHH----------HcccCHHHHHHHHH-------HHH
Confidence 456666677889999999999999998643 224566777777777 6786 999999995 443
Q ss_pred hcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccc
Q 002846 271 DSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID 350 (874)
Q Consensus 271 ~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~ 350 (874)
.. .-.+...|+.+-.. +...|++++|+..|+++.... |+. ...|
T Consensus 160 ~l-~P~~~~a~~~~g~~------~~~~g~~~eAl~~~~kal~ld--P~~---------------------~~a~------ 203 (382)
T 2h6f_A 160 EE-QPKNYQVWHHRRVL------VEWLRDPSQELEFIADILNQD--AKN---------------------YHAW------ 203 (382)
T ss_dssp HH-CTTCHHHHHHHHHH------HHHHTCCTTHHHHHHHHHHHC--TTC---------------------HHHH------
T ss_pred HH-CCCCHHHHHHHHHH------HHHccCHHHHHHHHHHHHHhC--ccC---------------------HHHH------
Confidence 32 33356678887777 888999999999999888762 221 1222
Q ss_pred cCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChhHH-----HHHHHHHHHCCCCCC-cc
Q 002846 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS-MGDGDMA-----FDMVKRMKSLGINPR-LR 423 (874)
Q Consensus 351 ~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~-~G~~d~A-----~~l~~~M~~~Gi~Pd-~~ 423 (874)
..+-..+.+.|++++|++.|+++.... +-+...|+.+-.++.. .|..++| +..+++.... .|+ ..
T Consensus 204 -----~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--~P~~~~ 275 (382)
T 2h6f_A 204 -----QHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNES 275 (382)
T ss_dssp -----HHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCHH
T ss_pred -----HHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--CCCCHH
Confidence 555567778899999999999999864 3378899999999999 6666888 4777777664 454 55
Q ss_pred cHHHHHHHHHhCC--ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---------CchHHHHHHHHH-Hhc
Q 002846 424 SYGPALSVFCNNG--DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAG---------KGDRVYYLLHKL-RTS 486 (874)
Q Consensus 424 tYn~LI~a~~k~G--~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G---------~~d~A~~ll~~M-~~~ 486 (874)
.|+.+-..|...| +.++|.+.+.++ ..-..+...+..|...|.+.| ..++|..+++++ .+.
T Consensus 276 a~~~l~~ll~~~g~~~~~~a~~~~~~~--~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 276 AWNYLKGILQDRGLSKYPNLLNQLLDL--QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHTTTCGGGCHHHHHHHHHH--TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCccchHHHHHHHHHh--ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh
Confidence 7777777788888 689999999888 333446778889999998864 258999999998 443
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.15 E-value=8.8e-06 Score=89.93 Aligned_cols=272 Identities=11% Similarity=-0.051 Sum_probs=185.9
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHH
Q 002846 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSE--QFQLRVELDMCSKRGDVMGAIRLYDKAQRE----GIKL-GQYHYNV 231 (874)
Q Consensus 159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd--~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~----Gi~p-d~~tyn~ 231 (874)
.....++.++|...|++..... ++ .|. ...|..+-..|...|++++|+..|++.... +-.| ....+..
T Consensus 57 ~~~~~g~~~~A~~~~~~al~~~--~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 57 RLCNAGDCRAGVAFFQAAIQAG--TE---DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CS---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhc--cc---ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 4567889999999999987642 11 111 146888888999999999999999998742 2112 2345555
Q ss_pred HHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCC--chhhhHhhhcCcccChhhhhcCC----------
Q 002846 232 LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYR---------- 299 (874)
Q Consensus 232 LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~--d~vtyn~LI~~~~~~~~~~~~g~---------- 299 (874)
+-..|. ..|+.++|...+.-. -++....+-. ...+|..+-.. |...|+
T Consensus 132 l~~~~~----------~~g~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~~~~~~~~ 191 (411)
T 4a1s_A 132 LGNTLK----------VMGRFDEAAICCERH----LTLARQLGDRLSEGRALYNLGNV------YHAKGKHLGQRNPGKF 191 (411)
T ss_dssp HHHHHH----------HTTCHHHHHHHHHHH----HHHHHHHTCHHHHHHHHHHHHHH------HHHHHHHHHHHSTTCC
T ss_pred HHHHHH----------HCCCHHHHHHHHHHH----HHHHHHhhchHHHHHHHHHHHHH------HHHcCcccccccchhh
Confidence 555555 779999999998511 0111110111 23346666666 888888
Q ss_pred -------hHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCC--C-CcccccccccccCCccchHHHHHHhcCCHH
Q 002846 300 -------FDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGP--D-DQSRKKDWSIDNQDADEIRLSEDAKKYAFQ 369 (874)
Q Consensus 300 -------~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~--p-d~~ty~~w~i~~~~~~n~lI~~~~k~g~~~ 369 (874)
+++|...+.+.... ..... + ....| ..+-..|...|+++
T Consensus 192 ~~~a~~~~~~A~~~~~~al~~--------------------~~~~~~~~~~~~~~-----------~~la~~~~~~g~~~ 240 (411)
T 4a1s_A 192 GDDVKEALTRAVEFYQENLKL--------------------MRDLGDRGAQGRAC-----------GNLGNTYYLLGDFQ 240 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH--------------------HHHHTCHHHHHHHH-----------HHHHHHHHHTTCHH
T ss_pred hhhhhHHHHHHHHHHHHHHHH--------------------HHHcCCHHHHHHHH-----------HHHHHHHHHcCChH
Confidence 88888877765432 11000 0 00122 55667788999999
Q ss_pred HHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC----C-CCcccHHHHHHHHHhCCChh
Q 002846 370 RGFEIYEKMCLDEV-PMN----EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI----N-PRLRSYGPALSVFCNNGDVD 439 (874)
Q Consensus 370 ~A~~lf~~M~~~Gv-~Pd----~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi----~-Pd~~tYn~LI~a~~k~G~~~ 439 (874)
+|.+.|++.....- .++ ..+|..+...|...|++++|...+++.....- . ....+|..+-..|...|+.+
T Consensus 241 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 320 (411)
T 4a1s_A 241 AAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFN 320 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 99999988765310 112 23788999999999999999999988765311 0 11456777888899999999
Q ss_pred HHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 440 KACSVEEHMLEH----GVY-PEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 440 ~A~~l~~eM~~~----Gv~-Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
+|...+++.... +-. .....|..|-..|...|+.++|..+|.+....
T Consensus 321 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 321 TAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 999999987653 111 12347778888899999999999999998765
No 56
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.10 E-value=3.5e-05 Score=79.32 Aligned_cols=130 Identities=8% Similarity=-0.120 Sum_probs=83.4
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-------CCCCC
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLD------EVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL-------GINPR 421 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~------Gv~P-d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~-------Gi~Pd 421 (874)
..+-..|...|++++|.++|++.... +-.| ...++..+...|...|++++|..++++..+. ...+.
T Consensus 131 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~ 210 (283)
T 3edt_B 131 NNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGD 210 (283)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchh
Confidence 55556777888888888888877654 1122 3568889999999999999999999988753 23455
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHHHH---c-C-C-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 002846 422 LRSYGPALSVFCNNGDVDKACSVEEHMLE---H-G-V-YPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (874)
Q Consensus 422 ~~tYn~LI~a~~k~G~~~~A~~l~~eM~~---~-G-v-~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~ 485 (874)
...+-..+..+...+........+..+.. . + . ......+..|-..|...|++++|..+|++..+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 211 NKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55554444444444332222222222211 1 1 1 12345678888899999999999999988765
No 57
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.10 E-value=3.3e-05 Score=81.10 Aligned_cols=241 Identities=11% Similarity=0.010 Sum_probs=148.0
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCC-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CC-CCCHHHHH
Q 002846 159 KMEQRTNDSGQYKVRGITDEKGSKKS-KKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQRE------GI-KLGQYHYN 230 (874)
Q Consensus 159 ~~~k~~~~~~A~~vf~eM~~~g~k~~-~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~------Gi-~pd~~tyn 230 (874)
.....++.++|..+|+++........ .........+..+-..|...|++++|+.+|+++... +- ......|.
T Consensus 36 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 115 (311)
T 3nf1_A 36 QYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLN 115 (311)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 45577899999999999865211000 001123367888889999999999999999998853 22 22345677
Q ss_pred HHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhc------CCCC-chhhhHhhhcCcccChhhhhcCChHHH
Q 002846 231 VLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS------RDMD-NNGQLDYGSSPMIDKLESNSSYRFDDL 303 (874)
Q Consensus 231 ~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~------~gi~-d~vtyn~LI~~~~~~~~~~~~g~~e~A 303 (874)
.+-..+. ..|+.++|...|. +.... ..-+ ....|..+-.. +...|++++|
T Consensus 116 ~l~~~~~----------~~g~~~~A~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~la~~------~~~~~~~~~A 172 (311)
T 3nf1_A 116 NLAVLYG----------KRGKYKEAEPLCK-------RALEIREKVLGKDHPDVAKQLNNLALL------CQNQGKYEEV 172 (311)
T ss_dssp HHHHHHH----------TTTCHHHHHHHHH-------HHHHHHHHHHCTTCHHHHHHHHHHHHH------HHTTTCHHHH
T ss_pred HHHHHHH----------HcCcHHHHHHHHH-------HHHHHHHHhcCCCChHHHHHHHHHHHH------HHHcCCHHHH
Confidence 7777777 8899999999995 22221 0111 34457777777 8999999999
Q ss_pred HHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcC-CCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHC-
Q 002846 304 DSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERG-PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD- 381 (874)
Q Consensus 304 ~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m-~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~- 381 (874)
...|++....- ... .++.... ......+...|.+.|++++|.++|+++...
T Consensus 173 ~~~~~~a~~~~--------------------~~~~~~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 225 (311)
T 3nf1_A 173 EYYYQRALEIY--------------------QTKLGPDDPNV-------AKTKNNLASCYLKQGKFKQAETLYKEILTRA 225 (311)
T ss_dssp HHHHHHHHHHH--------------------HHTSCTTCHHH-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--------------------HHHhCCCCHHH-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 99999876541 111 0000000 012234557788899999999999998853
Q ss_pred ------CCCCC-------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHH
Q 002846 382 ------EVPMN-------EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (874)
Q Consensus 382 ------Gv~Pd-------~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM 448 (874)
...+. ...+..+...+...+.+.+|...++..... -..+..+|..+-..|.+.|+.++|.++|+..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 304 (311)
T 3nf1_A 226 HEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAA 304 (311)
T ss_dssp HHHHHC------CCHHHHHHHHHHC-------CCSCCCC----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 11121 223333444444556666666666665543 1234567888889999999999999999887
Q ss_pred HH
Q 002846 449 LE 450 (874)
Q Consensus 449 ~~ 450 (874)
.+
T Consensus 305 l~ 306 (311)
T 3nf1_A 305 MR 306 (311)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 58
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.09 E-value=9.9e-05 Score=70.67 Aligned_cols=154 Identities=12% Similarity=-0.003 Sum_probs=122.4
Q ss_pred CCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccH
Q 002846 248 KSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQL 327 (874)
Q Consensus 248 k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~ 327 (874)
..|+.++|...|. ++... .-.+...|..+... +...|++++|...++++.... |+.
T Consensus 20 ~~~~~~~A~~~~~-------~~~~~-~~~~~~~~~~~~~~------~~~~~~~~~A~~~~~~~~~~~--~~~-------- 75 (186)
T 3as5_A 20 KAGRYSQAVMLLE-------QVYDA-DAFDVDVALHLGIA------YVKTGAVDRGTELLERSLADA--PDN-------- 75 (186)
T ss_dssp HHTCHHHHHHHHT-------TTCCT-TSCCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHC--TTC--------
T ss_pred HhcCHHHHHHHHH-------HHHHh-CccChHHHHHHHHH------HHHcCCHHHHHHHHHHHHhcC--CCC--------
Confidence 6789999999995 33322 22255667778778 899999999999999987762 221
Q ss_pred HHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 002846 328 LDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAF 407 (874)
Q Consensus 328 ~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~ 407 (874)
...| ..+...+...|++++|.++|+++.... +.+...+..+...+...|++++|.
T Consensus 76 -------------~~~~-----------~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~ 130 (186)
T 3as5_A 76 -------------VKVA-----------TVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAI 130 (186)
T ss_dssp -------------HHHH-----------HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred -------------HHHH-----------HHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHH
Confidence 1112 666778889999999999999988763 457888999999999999999999
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 002846 408 DMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (874)
Q Consensus 408 ~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~ 451 (874)
..+++..... ..+...|..+...|...|+.++|...++...+.
T Consensus 131 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 131 DSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 9999988763 345678888899999999999999999987653
No 59
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.08 E-value=0.00022 Score=89.95 Aligned_cols=242 Identities=10% Similarity=0.108 Sum_probs=165.7
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 002846 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (874)
Q Consensus 159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (874)
.+...+..++|..+|+.-. .++ ...+.+|. ..|++++|.+++++.. +..+|..+=.++-
T Consensus 1058 Iai~lglyEEAf~IYkKa~----------~~~-~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql- 1116 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFD----------VNT-SAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQL- 1116 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcC----------CHH-HHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHH-
Confidence 3456778888999988861 011 23344443 6678888888888652 3567777777777
Q ss_pred cccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCC
Q 002846 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (874)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd 318 (874)
+.|++++|.+.|. .-.|.-.|.-++.. +.+.|++++|.+.|..-.... ++
T Consensus 1117 ---------~~G~~kEAIdsYi-------------KAdD~say~eVa~~------~~~lGkyEEAIeyL~mArk~~--~e 1166 (1630)
T 1xi4_A 1117 ---------QKGMVKEAIDSYI-------------KADDPSSYMEVVQA------ANTSGNWEELVKYLQMARKKA--RE 1166 (1630)
T ss_pred ---------hCCCHHHHHHHHH-------------hcCChHHHHHHHHH------HHHcCCHHHHHHHHHHHHhhc--cc
Confidence 7899999999984 12245557778888 999999999999888655443 33
Q ss_pred e-------eeec-cccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 002846 319 G-------HMKL-NSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASL 390 (874)
Q Consensus 319 ~-------~ty~-~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~ty 390 (874)
. ..|. .+++++...++. .++...| ..+=..|...|++++|..+|... ..|
T Consensus 1167 ~~Idt~LafaYAKl~rleele~fI~--~~n~ad~-----------~~iGd~le~eg~YeeA~~~Y~kA---------~ny 1224 (1630)
T 1xi4_A 1167 SYVETELIFALAKTNRLAELEEFIN--GPNNAHI-----------QQVGDRCYDEKMYDAAKLLYNNV---------SNF 1224 (1630)
T ss_pred ccccHHHHHHHHhhcCHHHHHHHHh--CCCHHHH-----------HHHHHHHHhcCCHHHHHHHHHhh---------hHH
Confidence 3 2222 344443222221 3344444 44556666778888888888773 478
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 002846 391 TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA 470 (874)
Q Consensus 391 n~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~ 470 (874)
..+...|++.|++++|.+.+++- -+..+|.-+-.+|...|++..|...... +.-+...+..++..|.+.
T Consensus 1225 ~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~ 1293 (1630)
T 1xi4_A 1225 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDR 1293 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHc
Confidence 88888888888888888888654 3557777777777778887777776554 335667778999999999
Q ss_pred CCchHHHHHHHHHH
Q 002846 471 GKGDRVYYLLHKLR 484 (874)
Q Consensus 471 G~~d~A~~ll~~M~ 484 (874)
|.+++|..+|+.-.
T Consensus 1294 G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1294 GYFEELITMLEAAL 1307 (1630)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999996544
No 60
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.06 E-value=0.0013 Score=75.32 Aligned_cols=113 Identities=12% Similarity=0.068 Sum_probs=78.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCC---
Q 002846 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM-----GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG--- 436 (874)
Q Consensus 365 ~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~-----G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G--- 436 (874)
.++.++|++.|+...+.| +...+..|-..|... ++.++|...|++..+.|. ...+..|-..|...|
T Consensus 272 ~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~y~~~g~~~ 345 (490)
T 2xm6_A 272 AKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGD---ATAQANLGAIYFRLGSEE 345 (490)
T ss_dssp SCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHSCCHH
T ss_pred CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCcc
Confidence 677888888888777665 455666677777766 788888888877777642 334444555555545
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCchHHHHHHHHHHhc
Q 002846 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVE----AGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 437 ~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~----~G~~d~A~~ll~~M~~~ 486 (874)
+.++|.+.|+...+.| +...+..|-..|.. .++.++|...|.+..+.
T Consensus 346 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~ 396 (490)
T 2xm6_A 346 EHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ 396 (490)
T ss_dssp HHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC
Confidence 6777888887777754 56666666666666 67778888888777765
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.04 E-value=3.3e-05 Score=85.31 Aligned_cols=246 Identities=13% Similarity=0.046 Sum_probs=167.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCch
Q 002846 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ----YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNST 267 (874)
Q Consensus 192 ~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~----~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~ 267 (874)
..+..+-..+...|++++|+.+|+++.+.+-. +. ..|..+-..|. ..|+.++|...+.-. -
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~----------~~g~~~~A~~~~~~a----l 113 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYF----------YLGDYNKAMQYHKHD----L 113 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHH----------HHTCHHHHHHHHHHH----H
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHH----------HCCCHHHHHHHHHHH----H
Confidence 34445556788999999999999999976322 23 35666666666 679999999998511 1
Q ss_pred hhhhcCCCC--chhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCccccc
Q 002846 268 ELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKK 345 (874)
Q Consensus 268 em~~~~gi~--d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~ 345 (874)
++....+-. ....|..+-.. |...|++++|...|.+.....-..+ .....+ ..|
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~~-----------~~~- 169 (411)
T 4a1s_A 114 TLAKSMNDRLGEAKSSGNLGNT------LKVMGRFDEAAICCERHLTLARQLG------DRLSEG-----------RAL- 169 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHHT------CHHHHH-----------HHH-
T ss_pred HHHHHccCchHHHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHHHHHhh------chHHHH-----------HHH-
Confidence 111111111 23457777777 8999999999999988765310000 000011 112
Q ss_pred ccccccCCccchHHHHHHhcCC-----------------HHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCh
Q 002846 346 DWSIDNQDADEIRLSEDAKKYA-----------------FQRGFEIYEKMCLD----EVPM-NEASLTAVGRMAMSMGDG 403 (874)
Q Consensus 346 ~w~i~~~~~~n~lI~~~~k~g~-----------------~~~A~~lf~~M~~~----Gv~P-d~~tyn~LI~~~~~~G~~ 403 (874)
..+-..|...|+ +++|.+.|++.... +-.+ ...++..+...|...|++
T Consensus 170 ----------~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 239 (411)
T 4a1s_A 170 ----------YNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDF 239 (411)
T ss_dssp ----------HHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ----------HHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCh
Confidence 556667778888 89999988775531 2111 235788899999999999
Q ss_pred hHHHHHHHHHHHCCCC-CC----cccHHHHHHHHHhCCChhHHHHHHHHHHHcCC----C-CCHHHHHHHHHHHHhcCCc
Q 002846 404 DMAFDMVKRMKSLGIN-PR----LRSYGPALSVFCNNGDVDKACSVEEHMLEHGV----Y-PEEPELEALLRVSVEAGKG 473 (874)
Q Consensus 404 d~A~~l~~~M~~~Gi~-Pd----~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv----~-Pd~~ty~~LI~~~~~~G~~ 473 (874)
++|...+++..+..-. ++ ...|..+-..|...|++++|...+++.....- . .....+..+-..|...|++
T Consensus 240 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 319 (411)
T 4a1s_A 240 QAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEF 319 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH
Confidence 9999999987654110 11 23677888899999999999999988765311 0 1246778888889999999
Q ss_pred hHHHHHHHHHHhc
Q 002846 474 DRVYYLLHKLRTS 486 (874)
Q Consensus 474 d~A~~ll~~M~~~ 486 (874)
++|..+|++....
T Consensus 320 ~~A~~~~~~al~~ 332 (411)
T 4a1s_A 320 NTAIEYHNRHLAI 332 (411)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987653
No 62
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.03 E-value=0.0033 Score=71.84 Aligned_cols=245 Identities=8% Similarity=-0.019 Sum_probs=157.8
Q ss_pred cCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 002846 163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSK----RGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (874)
Q Consensus 163 ~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k----~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (874)
.++..+|.+.|+...+.| +...+..|=..|.. .+++++|+..|++..+.| +...+..|=..|..
T Consensus 92 ~~~~~~A~~~~~~a~~~~---------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~ 159 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALKG---------LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFE 159 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHc
Confidence 456677777777765432 22444445555655 667777877777777665 34445444444442
Q ss_pred cccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhh----cCChHHHHHHHHHHHHcC
Q 002846 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNS----SYRFDDLDSTFNEKENLG 314 (874)
Q Consensus 239 ~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~----~g~~e~A~~lf~eM~~~G 314 (874)
.. .-.++.++|...|. ...+. | +...+..|-.. |.. .++.++|...|.+-.+.|
T Consensus 160 g~------g~~~d~~~A~~~~~-------~a~~~-~--~~~a~~~Lg~~------y~~g~g~~~~~~~A~~~~~~a~~~~ 217 (490)
T 2xm6_A 160 GD------GVTRDYVMAREWYS-------KAAEQ-G--NVWSCNQLGYM------YSRGLGVERNDAISAQWYRKSATSG 217 (490)
T ss_dssp TS------SSCCCHHHHHHHHH-------HHHHT-T--CHHHHHHHHHH------HHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CC------CCCCCHHHHHHHHH-------HHHHC-C--CHHHHHHHHHH------HhcCCCCCcCHHHHHHHHHHHHHCC
Confidence 11 02466777777774 22222 1 23333333333 333 567777777777666654
Q ss_pred CCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 002846 315 QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAK----KYAFQRGFEIYEKMCLDEVPMNEASL 390 (874)
Q Consensus 315 i~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k----~g~~~~A~~lf~~M~~~Gv~Pd~~ty 390 (874)
. ... + ..+-..|.. .++.++|.++|++..+.| +...+
T Consensus 218 ~---~~a----------------------~-----------~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 258 (490)
T 2xm6_A 218 D---ELG----------------------Q-----------LHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQ 258 (490)
T ss_dssp C---HHH----------------------H-----------HHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred C---HHH----------------------H-----------HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 1 111 1 344444544 789999999999988775 56677
Q ss_pred HHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhC-----CChhHHHHHHHHHHHcCCCCCHHHHH
Q 002846 391 TAVGRMAMS----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN-----GDVDKACSVEEHMLEHGVYPEEPELE 461 (874)
Q Consensus 391 n~LI~~~~~----~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~-----G~~~~A~~l~~eM~~~Gv~Pd~~ty~ 461 (874)
..|-..|.. .++.++|...|++..+.| +...+..|-..|... ++.++|...|+...+.| +...+.
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 332 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQA 332 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHH
Confidence 777777877 899999999999887765 334555566666666 89999999999988875 455666
Q ss_pred HHHHHHHhcC---CchHHHHHHHHHHhc
Q 002846 462 ALLRVSVEAG---KGDRVYYLLHKLRTS 486 (874)
Q Consensus 462 ~LI~~~~~~G---~~d~A~~ll~~M~~~ 486 (874)
.|-..|...| +.++|..+|.+..+.
T Consensus 333 ~lg~~y~~~g~~~~~~~A~~~~~~a~~~ 360 (490)
T 2xm6_A 333 NLGAIYFRLGSEEEHKKAVEWFRKAAAK 360 (490)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCcccHHHHHHHHHHHHHC
Confidence 6666676656 678899999888776
No 63
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.03 E-value=0.00016 Score=74.70 Aligned_cols=189 Identities=11% Similarity=0.006 Sum_probs=116.4
Q ss_pred CCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccH
Q 002846 248 KSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQL 327 (874)
Q Consensus 248 k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~ 327 (874)
..|++++|...|. +..+. .-.+...|..+-.. +...|++++|...|++....+-.|+....
T Consensus 15 ~~~~~~~A~~~~~-------~~l~~-~p~~~~~~~~l~~~------~~~~~~~~~A~~~~~~a~~~~~~~~~~~~----- 75 (272)
T 3u4t_A 15 KNNNYAEAIEVFN-------KLEAK-KYNSPYIYNRRAVC------YYELAKYDLAQKDIETYFSKVNATKAKSA----- 75 (272)
T ss_dssp TTTCHHHHHHHHH-------HHHHT-TCCCSTTHHHHHHH------HHHTTCHHHHHHHHHHHHTTSCTTTCCHH-----
T ss_pred HhcCHHHHHHHHH-------HHHHh-CCCcHHHHHHHHHH------HHHHhhHHHHHHHHHHHHhccCchhHHHH-----
Confidence 5677788888774 33332 22234455555556 77778888888877777664322221110
Q ss_pred HHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 002846 328 LDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAF 407 (874)
Q Consensus 328 ~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~ 407 (874)
.| ..+-..+...|++++|.+.|++..... +-+..+|..+...|...|++++|.
T Consensus 76 ---------------~~-----------~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 128 (272)
T 3u4t_A 76 ---------------DF-----------EYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAI 128 (272)
T ss_dssp ---------------HH-----------HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred ---------------HH-----------HHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHH
Confidence 01 455566777788888888887777643 224567777788888888888888
Q ss_pred HHHHHHHHCCCCCC-cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCC---chHHHHHHHH
Q 002846 408 DMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGK---GDRVYYLLHK 482 (874)
Q Consensus 408 ~l~~~M~~~Gi~Pd-~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd-~~ty~~LI~~~~~~G~---~d~A~~ll~~ 482 (874)
..|++..+. .|+ ...|..+-..+...+++++|.+.|+...+.. |+ ...+..+-..+...|+ .++|...+.+
T Consensus 129 ~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 204 (272)
T 3u4t_A 129 QYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEK 204 (272)
T ss_dssp HHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHH
T ss_pred HHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHH
Confidence 888776554 343 3334333313444557888888887777643 43 5566666666666666 6667777766
Q ss_pred HHhc
Q 002846 483 LRTS 486 (874)
Q Consensus 483 M~~~ 486 (874)
....
T Consensus 205 a~~~ 208 (272)
T 3u4t_A 205 LIEV 208 (272)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6553
No 64
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.02 E-value=6e-05 Score=67.85 Aligned_cols=122 Identities=16% Similarity=0.156 Sum_probs=100.6
Q ss_pred hhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHH
Q 002846 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (874)
Q Consensus 294 ~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~ 373 (874)
+...|++++|..+|.++....- .+...+ ..+...+...|++++|..
T Consensus 11 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~---------------------------------~~~a~~~~~~~~~~~A~~ 56 (136)
T 2fo7_A 11 YYKQGDYDEAIEYYQKALELDP-RSAEAW---------------------------------YNLGNAYYKQGDYDEAIE 56 (136)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCT-TCHHHH---------------------------------HHHHHHHHHHTCHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHHHcCC-cchhHH---------------------------------HHHHHHHHHhcCHHHHHH
Confidence 7888999999999999887631 112222 666778889999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 002846 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (874)
Q Consensus 374 lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~ 451 (874)
+|+++...+ +.+...+..+...+...|++++|..+++++.... ..+...+..+...|.+.|+.++|...++++...
T Consensus 57 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 57 YYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHC-CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 999998764 3467789999999999999999999999998763 235677888999999999999999999998764
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.99 E-value=7.5e-05 Score=78.52 Aligned_cols=243 Identities=11% Similarity=0.016 Sum_probs=165.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCch
Q 002846 193 QLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG-----QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNST 267 (874)
Q Consensus 193 tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd-----~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~ 267 (874)
.+...=..+.+.|++++|+.+|+++.+.. |+ ...|..+-..+. ..|+.++|...+.-. .
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~----------~~g~~~~A~~~~~~a----l 70 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYF----------YLHDYAKALEYHHHD----L 70 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHH----------HTTCHHHHHHHHHHH----H
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHH----------HcCCHHHHHHHHHHH----H
Confidence 34445567789999999999999998763 33 355666666666 779999999998511 0
Q ss_pred hhhhcCCCC--chhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCC-CCeeeeccccHHHHHHhhhcCCCCcccc
Q 002846 268 ELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQF-SNGHMKLNSQLLDGRSNLERGPDDQSRK 344 (874)
Q Consensus 268 em~~~~gi~--d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~-Pd~~ty~~g~~~eA~~l~~~m~pd~~ty 344 (874)
++....+-. ....|..+-.. +...|++++|...|.+.....-. ++. ...+ .++
T Consensus 71 ~~~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~~~-----------~~~ 126 (338)
T 3ro2_A 71 TLARTIGDQLGEAKASGNLGNT------LKVLGNFDEAIVCCQRHLDISRELNDK-------VGEA-----------RAL 126 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHTTCH-------HHHH-----------HHH
T ss_pred HHhhcccccHHHHHHHHHHHHH------HHHccCHHHHHHHHHHHHHHHHHhcCc-------hHHH-----------HHH
Confidence 111111111 23457777777 88999999999999876553100 000 0001 112
Q ss_pred cccccccCCccchHHHHHHhcCC--------------------HHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHh
Q 002846 345 KDWSIDNQDADEIRLSEDAKKYA--------------------FQRGFEIYEKMCLD----EVPM-NEASLTAVGRMAMS 399 (874)
Q Consensus 345 ~~w~i~~~~~~n~lI~~~~k~g~--------------------~~~A~~lf~~M~~~----Gv~P-d~~tyn~LI~~~~~ 399 (874)
..+-..+...|+ +++|.+.+++.... +-.+ ...++..+...+..
T Consensus 127 -----------~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 195 (338)
T 3ro2_A 127 -----------YNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYL 195 (338)
T ss_dssp -----------HHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 555667777788 89999888776532 2111 24578888999999
Q ss_pred cCChhHHHHHHHHHHHCCC-CCC----cccHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHh
Q 002846 400 MGDGDMAFDMVKRMKSLGI-NPR----LRSYGPALSVFCNNGDVDKACSVEEHMLEHGV-YPE----EPELEALLRVSVE 469 (874)
Q Consensus 400 ~G~~d~A~~l~~~M~~~Gi-~Pd----~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv-~Pd----~~ty~~LI~~~~~ 469 (874)
.|++++|...+++..+..- .++ ..++..+-..|...|+.++|...+++.....- ..+ ..++..+-..+..
T Consensus 196 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 275 (338)
T 3ro2_A 196 LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL 275 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Confidence 9999999999998764310 011 23677788889999999999999988764310 112 5567788888999
Q ss_pred cCCchHHHHHHHHHHhc
Q 002846 470 AGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 470 ~G~~d~A~~ll~~M~~~ 486 (874)
.|++++|...+.+....
T Consensus 276 ~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 276 LQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHH
Confidence 99999999999887653
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=97.94 E-value=0.00041 Score=67.53 Aligned_cols=165 Identities=12% Similarity=0.025 Sum_probs=129.1
Q ss_pred hhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchH
Q 002846 279 GQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIR 358 (874)
Q Consensus 279 vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~l 358 (874)
..|..|=.. +...|++++|...|++..+.. |+.. ..| ..+
T Consensus 6 ~iy~~lG~~------~~~~g~~~~A~~~~~~al~~~--p~~~---------------------~~~-----------~~l 45 (184)
T 3vtx_A 6 TIYMDIGDK------KRTKGDFDGAIRAYKKVLKAD--PNNV---------------------ETL-----------LKL 45 (184)
T ss_dssp HHHHHHHHH------HHHHTCHHHHHHHHHHHHHHC--TTCH---------------------HHH-----------HHH
T ss_pred HHHHHHHHH------HHHcCCHHHHHHHHHHHHHhC--CCCH---------------------HHH-----------HHH
Confidence 345555555 888999999999999877652 3321 122 566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCCh
Q 002846 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDV 438 (874)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~ 438 (874)
-..|.+.|++++|...+....... +-+...+..+...+...++++.|...+.+..... +-+...+..+-..|.+.|++
T Consensus 46 a~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~ 123 (184)
T 3vtx_A 46 GKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEH 123 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCc
Confidence 677889999999999999887754 3356778888888999999999999999887652 23456777778888899999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 439 DKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 439 ~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
++|.+.|+...+.. +-+...|..|-..|.+.|+.++|...|++..+.
T Consensus 124 ~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 124 DKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 99999999988754 235678888989999999999999999988765
No 67
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=97.92 E-value=0.0005 Score=79.53 Aligned_cols=269 Identities=10% Similarity=0.026 Sum_probs=177.1
Q ss_pred CChhHHHHHHHHHhh--CCCCCCC-CCCCC--------HHHHHHHHHHHHHc----CCH----HHHHHHHHHHHHcCCCC
Q 002846 164 TNDSGQYKVRGITDE--KGSKKSK-KDRSE--------QFQLRVELDMCSKR----GDV----MGAIRLYDKAQREGIKL 224 (874)
Q Consensus 164 ~~~~~A~~vf~eM~~--~g~k~~~-g~~Pd--------~~tyn~LI~a~~k~----G~~----~~Al~lf~~M~~~Gi~p 224 (874)
++...|..++.++.. .+..... .+.|+ ...|...|.-.-.. ++. .+|+.+|+++... .+-
T Consensus 192 ~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~ 270 (530)
T 2ooe_A 192 RDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGH 270 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTT
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCC
Confidence 445667777776321 1222211 12343 35676666544332 233 4788899998864 233
Q ss_pred CHHHHHHHHHHHHhcccCCCcccCCCCHH-------HHHHHHhhcccCchhhhhcCCCC-chhhhHhhhcCcccChhhhh
Q 002846 225 GQYHYNVLLYLCSSAAVGVVKPAKSGSGM-------RTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNS 296 (874)
Q Consensus 225 d~~tyn~LL~a~~~~~~~~~~~~k~G~~~-------~A~~vf~v~~~~s~em~~~~gi~-d~vtyn~LI~~~~~~~~~~~ 296 (874)
+...|..+...+...... -...|+++ +|..+|. ..... -.+ +...|..+... +.+
T Consensus 271 ~~~~w~~~~~~~~~~~~~---~~~~g~~~~a~~~~~~A~~~~~-------~Al~~-~~p~~~~l~~~~~~~------~~~ 333 (530)
T 2ooe_A 271 HPDIWYEAAQYLEQSSKL---LAEKGDMNNAKLFSDEAANIYE-------RAIST-LLKKNMLLYFAYADY------EES 333 (530)
T ss_dssp CHHHHHHHHHHHHHHHHH---HHTTTCCHHHHHHHHHHHHHHH-------HHTTT-TCSSCHHHHHHHHHH------HHH
T ss_pred CHHHHHHHHHHHHHhchh---hhhccchhhhhhhhHHHHHHHH-------HHHHH-hCcccHHHHHHHHHH------HHh
Confidence 566777666666521000 00157776 8888885 22221 123 45568888887 888
Q ss_pred cCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHH
Q 002846 297 SYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYE 376 (874)
Q Consensus 297 ~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~ 376 (874)
.|++++|..+|++.... .|+..+ ..| ..+...+.+.|++++|.++|+
T Consensus 334 ~g~~~~A~~~~~~al~~--~p~~~~--------------------~~~-----------~~~~~~~~~~~~~~~A~~~~~ 380 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAI--EDIDPT--------------------LVY-----------IQYMKFARRAEGIKSGRMIFK 380 (530)
T ss_dssp TTCHHHHHHHHHHHHHS--SSSCHH--------------------HHH-----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhCc--cccCch--------------------HHH-----------HHHHHHHHHhcCHHHHHHHHH
Confidence 99999999999998874 343211 122 666677778899999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHH-HHhcCChhHHHHHHHHHHHCCCCC-CcccHHHHHHHHHhCCChhHHHHHHHHHHHcC-C
Q 002846 377 KMCLDEVPMNEASLTAVGRM-AMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHG-V 453 (874)
Q Consensus 377 ~M~~~Gv~Pd~~tyn~LI~~-~~~~G~~d~A~~l~~~M~~~Gi~P-d~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~G-v 453 (874)
...... +.+...|-..... +...|+.++|..+|+...+. .| +...|..++..+.+.|+.++|..+|+.....+ .
T Consensus 381 ~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~ 457 (530)
T 2ooe_A 381 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 457 (530)
T ss_dssp HHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCS
T ss_pred HHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCC
Confidence 988653 1222333222222 34689999999999987765 24 46778888888889999999999999998864 2
Q ss_pred CCC--HHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 454 YPE--EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 454 ~Pd--~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
.|+ ...|...+......|+.+.+..++.++.+.
T Consensus 458 ~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 458 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp CGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 332 558888888888899999999999998876
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=97.92 E-value=7.9e-05 Score=85.62 Aligned_cols=212 Identities=4% Similarity=-0.135 Sum_probs=159.7
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCH-HHHHHHHhhcccCchhhhhcCCCCchhhhHhhh
Q 002846 207 VMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSG-MRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGS 285 (874)
Q Consensus 207 ~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~-~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI 285 (874)
+++|+..+++..... ..+...|..+=.++. ..|++ ++|...|. +..+. .-.+...|..+-
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~----------~~g~~~~~A~~~~~-------~al~~-~p~~~~a~~~lg 144 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALN----------VTPDYSPEAEVLLS-------KAVKL-EPELVEAWNQLG 144 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHT----------SSSSCCHHHHHHHH-------HHHHH-CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHH----------hccccHHHHHHHHH-------HHHhh-CCCCHHHHHHHH
Confidence 567777777655322 235566666666666 78999 99999995 33332 222556788888
Q ss_pred cCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhc
Q 002846 286 SPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKK 365 (874)
Q Consensus 286 ~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~ 365 (874)
.. |...|++++|...|++..... |+...+ ..+-..|...
T Consensus 145 ~~------~~~~g~~~~A~~~~~~al~~~--p~~~~~---------------------------------~~lg~~~~~~ 183 (474)
T 4abn_A 145 EV------YWKKGDVTSAHTCFSGALTHC--KNKVSL---------------------------------QNLSMVLRQL 183 (474)
T ss_dssp HH------HHHHTCHHHHHHHHHHHHTTC--CCHHHH---------------------------------HHHHHHHTTC
T ss_pred HH------HHHcCCHHHHHHHHHHHHhhC--CCHHHH---------------------------------HHHHHHHHHh
Confidence 88 999999999999999988763 553333 4455556666
Q ss_pred ---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CChhHHHHHHHHHHHCCCCC----Cccc
Q 002846 366 ---------YAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM--------GDGDMAFDMVKRMKSLGINP----RLRS 424 (874)
Q Consensus 366 ---------g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~--------G~~d~A~~l~~~M~~~Gi~P----d~~t 424 (874)
|++++|.+.|++..+.. +-+...|..+-.+|... |++++|...|++..+. .| +...
T Consensus 184 ~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 260 (474)
T 4abn_A 184 QTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--DRKASSNPDL 260 (474)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGGGCHHH
T ss_pred ccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--CCCcccCHHH
Confidence 89999999999988753 33678899999999988 9999999999998875 35 6778
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 002846 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKL 483 (874)
Q Consensus 425 Yn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~P-d~~ty~~LI~~~~~~G~~d~A~~ll~~M 483 (874)
|..+-..|...|++++|.+.|++..+.. | +...+..+-..+...|+.++|...+.++
T Consensus 261 ~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 261 HLNRATLHKYEESYGEALEGFSQAAALD--PAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 8888899999999999999999987753 4 4556777778888888888887765443
No 69
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.83 E-value=0.00012 Score=79.78 Aligned_cols=256 Identities=13% Similarity=0.001 Sum_probs=174.5
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHH
Q 002846 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSE--QFQLRVELDMCSKRGDVMGAIRLYDKAQRE----GIKLG-QYHYNV 231 (874)
Q Consensus 159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd--~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~----Gi~pd-~~tyn~ 231 (874)
.....++..+|...|++..... ++ .|. ...|..+-..|...|++++|+..|+++... +-.|. ...+..
T Consensus 18 ~~~~~g~~~~A~~~~~~al~~~--~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 92 (406)
T 3sf4_A 18 RLCKSGDCRAGVSFFEAAVQVG--TE---DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 92 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CS---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcC--cc---cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 5667899999999999986642 11 111 256888888999999999999999987632 22222 335555
Q ss_pred HHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCC--chhhhHhhhcCcccChhhhhcCC----------
Q 002846 232 LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYR---------- 299 (874)
Q Consensus 232 LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~--d~vtyn~LI~~~~~~~~~~~~g~---------- 299 (874)
+-..+. ..|+.++|...+.-. -++....+-. -..+|..+-.. +...|+
T Consensus 93 la~~~~----------~~g~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~~~~~~~~ 152 (406)
T 3sf4_A 93 LGNTLK----------VLGNFDEAIVCCQRH----LDISRELNDKVGEARALYNLGNV------YHAKGKSFGCPGPQDV 152 (406)
T ss_dssp HHHHHH----------HTTCHHHHHHHHHHH----HHHHHHHTCHHHHHHHHHHHHHH------HHHHHHTCC-------
T ss_pred HHHHHH----------HcCCHHHHHHHHHHH----HHHHHhcccccchHHHHHHHHHH------HHHcCCcccccccchh
Confidence 555665 779999999988511 0111110111 12356666666 888888
Q ss_pred ----------hHHHHHHHHHHHHc----CCCCCe-eeec--------cccHHHHHHhhhcC------CCC----cccccc
Q 002846 300 ----------FDDLDSTFNEKENL----GQFSNG-HMKL--------NSQLLDGRSNLERG------PDD----QSRKKD 346 (874)
Q Consensus 300 ----------~e~A~~lf~eM~~~----Gi~Pd~-~ty~--------~g~~~eA~~l~~~m------~pd----~~ty~~ 346 (874)
+++|...+.+.... +-.|.. ..|. .|+.++|...+.+. .++ ...|
T Consensus 153 ~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-- 230 (406)
T 3sf4_A 153 GEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAY-- 230 (406)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHH--
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHH--
Confidence 99999888876442 111111 1121 78888998888876 222 1244
Q ss_pred cccccCCccchHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CC
Q 002846 347 WSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD----EVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI-NP 420 (874)
Q Consensus 347 w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~----Gv~Pd-~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi-~P 420 (874)
..+-..|...|++++|...|++.... +-.+. ..++..+...|...|++++|...+++.....- .+
T Consensus 231 ---------~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 301 (406)
T 3sf4_A 231 ---------SNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN 301 (406)
T ss_dssp ---------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred ---------HHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC
Confidence 66677888999999999999887642 21111 56788999999999999999999988765311 11
Q ss_pred C----cccHHHHHHHHHhCCChhHHHHHHHHHHH
Q 002846 421 R----LRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (874)
Q Consensus 421 d----~~tYn~LI~a~~k~G~~~~A~~l~~eM~~ 450 (874)
+ ..+|..+-..|...|+.++|.+.+++..+
T Consensus 302 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 302 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 45677788888899999999999988654
No 70
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=97.82 E-value=0.00075 Score=75.47 Aligned_cols=238 Identities=9% Similarity=-0.035 Sum_probs=170.5
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 002846 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGD-VMGAIRLYDKAQREGIKLGQYHYNVLLYLCS 237 (874)
Q Consensus 159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~-~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~ 237 (874)
.+.+.++.++|+..|+..+... | -+...|+.+-..+.+.|+ +++|+..|+++.... +-+...|+.+=.++.
T Consensus 106 ~~~~~g~~~~Al~~~~~al~l~--P-----~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 106 VLQRDERSERAFKLTRDAIELN--A-----ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHC--T-----TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHCCChHHHHHHHHHHHHhC--c-----cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence 4567789999999999986531 1 234788888889999996 999999999999754 225567777777777
Q ss_pred hcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCC
Q 002846 238 SAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS 317 (874)
Q Consensus 238 ~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~P 317 (874)
+.|++++|+..|. ...+. .-.+...|..+-.. +.+.|++++|+..|+++.... |
T Consensus 178 ----------~~g~~~eAl~~~~-------kal~l-dP~~~~a~~~lg~~------~~~~g~~~eAl~~~~~al~l~--P 231 (382)
T 2h6f_A 178 ----------WLRDPSQELEFIA-------DILNQ-DAKNYHAWQHRQWV------IQEFKLWDNELQYVDQLLKED--V 231 (382)
T ss_dssp ----------HHTCCTTHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHHHTCCTTHHHHHHHHHHHC--T
T ss_pred ----------HccCHHHHHHHHH-------HHHHh-CccCHHHHHHHHHH------HHHcCChHHHHHHHHHHHHhC--C
Confidence 6789999999995 44433 33366778888777 889999999999999998863 2
Q ss_pred CeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHh-cCCHHHH-----HHHHHHHHHCCCCCCHHHHH
Q 002846 318 NGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAK-KYAFQRG-----FEIYEKMCLDEVPMNEASLT 391 (874)
Q Consensus 318 d~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k-~g~~~~A-----~~lf~~M~~~Gv~Pd~~tyn 391 (874)
+. ...| +.+-..+.+ .|..++| ++.|++..... +-+...|+
T Consensus 232 ~~---------------------~~a~-----------~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~ 278 (382)
T 2h6f_A 232 RN---------------------NSVW-----------NQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWN 278 (382)
T ss_dssp TC---------------------HHHH-----------HHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred CC---------------------HHHH-----------HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHH
Confidence 21 1122 444455566 5554666 57787777643 23678899
Q ss_pred HHHHHHHhcC--ChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCC---------ChhHHHHHHHHH-HHcCCCCC-HH
Q 002846 392 AVGRMAMSMG--DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG---------DVDKACSVEEHM-LEHGVYPE-EP 458 (874)
Q Consensus 392 ~LI~~~~~~G--~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G---------~~~~A~~l~~eM-~~~Gv~Pd-~~ 458 (874)
.+...+...| +.++|++.+.++ +. -..+...+..+...|.+.| ..++|.++|+.+ .+. .|. ..
T Consensus 279 ~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~--DP~r~~ 354 (382)
T 2h6f_A 279 YLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK--DTIRKE 354 (382)
T ss_dssp HHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT--CGGGHH
T ss_pred HHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh--CchhHH
Confidence 9999999988 689999999887 22 2334567778888888864 358999999998 553 353 34
Q ss_pred HHHHHHHHH
Q 002846 459 ELEALLRVS 467 (874)
Q Consensus 459 ty~~LI~~~ 467 (874)
-|..+...+
T Consensus 355 ~w~~~~~~l 363 (382)
T 2h6f_A 355 YWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 455454444
No 71
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.81 E-value=0.0021 Score=69.95 Aligned_cols=273 Identities=9% Similarity=-0.022 Sum_probs=170.6
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHH----HHHHH
Q 002846 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRS--EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGI-KLGQY----HYNVL 232 (874)
Q Consensus 160 ~~k~~~~~~A~~vf~eM~~~g~k~~~g~~P--d~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi-~pd~~----tyn~L 232 (874)
....++.++|...+++..... +.. .+ -...++.+-..+...|++++|...+++.....- ..+.. +++.+
T Consensus 24 ~~~~g~~~~A~~~~~~al~~~--~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 24 AINDGNPDEAERLAKLALEEL--PPG--WFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHTC--CTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcC--CCC--chhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 345788999999999875532 111 11 112556666788889999999999999874211 11222 23333
Q ss_pred HHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCC----chhhhHhhhcCcccChhhhhcCChHHHHHHHH
Q 002846 233 LYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD----NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFN 308 (874)
Q Consensus 233 L~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~----d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~ 308 (874)
-..+. ..|++++|...+.-. -+.....+-. ....+..+-.. +...|++++|...+.
T Consensus 100 a~~~~----------~~G~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~~~la~~------~~~~g~~~~A~~~~~ 159 (373)
T 1hz4_A 100 SEILF----------AQGFLQTAWETQEKA----FQLINEQHLEQLPMHEFLVRIRAQL------LWAWARLDEAEASAR 159 (373)
T ss_dssp HHHHH----------HTTCHHHHHHHHHHH----HHHHHHTTCTTSTHHHHHHHHHHHH------HHHTTCHHHHHHHHH
T ss_pred HHHHH----------HCCCHHHHHHHHHHH----HHHHHHhccccCcHHHHHHHHHHHH------HHHhcCHHHHHHHHH
Confidence 34444 679999999998511 0111111221 12335555556 888999999999999
Q ss_pred HHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--
Q 002846 309 EKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN-- 386 (874)
Q Consensus 309 eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd-- 386 (874)
+.....-......+ ...| ..+-..+...|++++|...+++.....-.++
T Consensus 160 ~al~~~~~~~~~~~------------------~~~~-----------~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~ 210 (373)
T 1hz4_A 160 SGIEVLSSYQPQQQ------------------LQCL-----------AMLIQCSLARGDLDNARSQLNRLENLLGNGKYH 210 (373)
T ss_dssp HHHHHTTTSCGGGG------------------HHHH-----------HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHhhccCcHHH------------------HHHH-----------HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcc
Confidence 87654321100000 0111 4555677889999999999998765311111
Q ss_pred HHHHH----HHHHHHHhcCChhHHHHHHHHHHHCCCCCC---cccHHHHHHHHHhCCChhHHHHHHHHHHHc----CCCC
Q 002846 387 EASLT----AVGRMAMSMGDGDMAFDMVKRMKSLGINPR---LRSYGPALSVFCNNGDVDKACSVEEHMLEH----GVYP 455 (874)
Q Consensus 387 ~~tyn----~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd---~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~----Gv~P 455 (874)
..... .++..+...|++++|...+++.......+. ...+..+...+...|+.++|..+++..... |..+
T Consensus 211 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~ 290 (373)
T 1hz4_A 211 SDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMS 290 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchh
Confidence 11111 234457799999999999988754322111 123556778888999999999999887543 3222
Q ss_pred CHH-HHHHHHHHHHhcCCchHHHHHHHHHHh
Q 002846 456 EEP-ELEALLRVSVEAGKGDRVYYLLHKLRT 485 (874)
Q Consensus 456 d~~-ty~~LI~~~~~~G~~d~A~~ll~~M~~ 485 (874)
+.. .+..+-.++...|+.++|...|.+...
T Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 291 DLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 332 555666677889999999999888654
No 72
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=97.81 E-value=0.0012 Score=64.20 Aligned_cols=165 Identities=18% Similarity=0.108 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhh
Q 002846 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG 270 (874)
Q Consensus 191 ~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~ 270 (874)
...|..+=..|.+.|++++|+..|++..+.. +-+...|..+-.++. +.|+.++|...+.
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~----------~~~~~~~a~~~~~---------- 63 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYM----------DIGLPNDAIESLK---------- 63 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----------HTTCHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH----------HCCCHHHHHHHHH----------
Confidence 4678888888999999999999999988653 223455555555555 4566666666553
Q ss_pred hcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccc
Q 002846 271 DSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID 350 (874)
Q Consensus 271 ~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~ 350 (874)
...... |+.. ..+
T Consensus 64 --------------------------------------~~~~~~--~~~~---------------------~~~------ 76 (184)
T 3vtx_A 64 --------------------------------------KFVVLD--TTSA---------------------EAY------ 76 (184)
T ss_dssp --------------------------------------HHHHHC--CCCH---------------------HHH------
T ss_pred --------------------------------------HHHhcC--chhH---------------------HHH------
Confidence 322221 1100 000
Q ss_pred cCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHH
Q 002846 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430 (874)
Q Consensus 351 ~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~ 430 (874)
..+-..+...++.+.|.+.+.+..... +-+...+..+-..+.+.|++++|.+.|++..+.. +-+...|..+-.
T Consensus 77 -----~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~ 149 (184)
T 3vtx_A 77 -----YILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGL 149 (184)
T ss_dssp -----HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred -----HHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHH
Confidence 223344555667777777777665542 3356677777777788888888888887776652 223556666777
Q ss_pred HHHhCCChhHHHHHHHHHHH
Q 002846 431 VFCNNGDVDKACSVEEHMLE 450 (874)
Q Consensus 431 a~~k~G~~~~A~~l~~eM~~ 450 (874)
.|.+.|+.++|.+.|+...+
T Consensus 150 ~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 150 AYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHh
Confidence 77788888888888877766
No 73
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.81 E-value=0.0014 Score=73.57 Aligned_cols=294 Identities=9% Similarity=-0.036 Sum_probs=168.0
Q ss_pred HHHhcCChhHHHHHHHHHhhC--CCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C-CCC-CHHHH
Q 002846 159 KMEQRTNDSGQYKVRGITDEK--GSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQRE-----G-IKL-GQYHY 229 (874)
Q Consensus 159 ~~~k~~~~~~A~~vf~eM~~~--g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~-----G-i~p-d~~ty 229 (874)
.....|+.++|++.|++-.+. ....+.......++|+-+-..|...|++++|+..|++..+- + ..+ ...+|
T Consensus 60 ~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~ 139 (472)
T 4g1t_A 60 LKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELD 139 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHH
Confidence 345678999999999875331 11111212234578999999999999999999999987631 1 112 23455
Q ss_pred HHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHH
Q 002846 230 NVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNE 309 (874)
Q Consensus 230 n~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~e 309 (874)
+.+-.++... ..++.++|...|. +..+. .-.+...+..+... ...+...++.++|++.|.+
T Consensus 140 ~~~g~~~~~~--------~~~~y~~A~~~~~-------kal~~-~p~~~~~~~~~~~~---~~~l~~~~~~~~al~~~~~ 200 (472)
T 4g1t_A 140 CEEGWTRLKC--------GGNQNERAKVCFE-------KALEK-KPKNPEFTSGLAIA---SYRLDNWPPSQNAIDPLRQ 200 (472)
T ss_dssp HHHHHHHHHH--------CTTHHHHHHHHHH-------HHHHH-STTCHHHHHHHHHH---HHHHHHSCCCCCTHHHHHH
T ss_pred HHHHHHHHHH--------ccccHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH---HHHhcCchHHHHHHHHHHH
Confidence 5443344311 2356889999995 32221 11232232222211 0013455777788888877
Q ss_pred HHHcCCCCCee-eec------------cccHHHHHHhhhcC---CCC-cccccccccccCCccchHHHHHHhcCCHHHHH
Q 002846 310 KENLGQFSNGH-MKL------------NSQLLDGRSNLERG---PDD-QSRKKDWSIDNQDADEIRLSEDAKKYAFQRGF 372 (874)
Q Consensus 310 M~~~Gi~Pd~~-ty~------------~g~~~eA~~l~~~m---~pd-~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~ 372 (874)
.... .|+.. .+. .++..+|...+++. .|+ ...+ ..+-..|.+.|+.++|.
T Consensus 201 al~l--~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~-----------~~lg~~~~~~~~~~~A~ 267 (472)
T 4g1t_A 201 AIRL--NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVL-----------RSAAKFYRRKDEPDKAI 267 (472)
T ss_dssp HHHH--CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHH-----------HHHHHHHHHTTCHHHHH
T ss_pred Hhhc--CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHH-----------HHHHHHHHHcCchHHHH
Confidence 6654 23321 111 45566777776664 333 3334 55667777888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh-------------------cCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 002846 373 EIYEKMCLDEVPMNEASLTAVGRMAMS-------------------MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433 (874)
Q Consensus 373 ~lf~~M~~~Gv~Pd~~tyn~LI~~~~~-------------------~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~ 433 (874)
+.|++..+.. +-+..++..+-..|.. .+..+.|...++...+.. ..+..+|..+-..|.
T Consensus 268 ~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~ 345 (472)
T 4g1t_A 268 ELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHA 345 (472)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHH
T ss_pred HHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHH
Confidence 8888776643 2234455555444432 123456666666665542 234566777777888
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCHH--HHHHHHH-HHHhcCCchHHHHHHHHHHhc
Q 002846 434 NNGDVDKACSVEEHMLEHGVYPEEP--ELEALLR-VSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 434 k~G~~~~A~~l~~eM~~~Gv~Pd~~--ty~~LI~-~~~~~G~~d~A~~ll~~M~~~ 486 (874)
..|+.++|.+.|+...+....+... .+..+-. .+...|+.++|...|.+....
T Consensus 346 ~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 346 LADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp HTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred HhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 8888888888888877654322211 1122211 223567788888888776654
No 74
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.74 E-value=0.00044 Score=76.07 Aligned_cols=235 Identities=10% Similarity=0.049 Sum_probs=156.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcC
Q 002846 199 DMCSKRGDVMGAIRLYDKAQREG-IKLG----QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSR 273 (874)
Q Consensus 199 ~a~~k~G~~~~Al~lf~~M~~~G-i~pd----~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~ 273 (874)
..+...|++++|+..|++....- -.+| ..+|..+=..+. ..|+.++|...+.-. -++....
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~----------~~~~~~~A~~~~~~a----l~~~~~~ 176 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYY----------YMKQTYFSMDYARQA----YEIYKEH 176 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH----------HTTCHHHHHHHHHHH----HHHHHTC
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH----------HcCCHHHHHHHHHHH----HHHHHhC
Confidence 45678899999999999998531 1133 245555555555 678999999888511 1121211
Q ss_pred CC-C--chhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCC-CCeeeeccccHHHHHHhhhcCCCCccccccccc
Q 002846 274 DM-D--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQF-SNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSI 349 (874)
Q Consensus 274 gi-~--d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~-Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i 349 (874)
+- . ...+++.+-.. |...|++++|...|.+.....-. ++. ...+ .++
T Consensus 177 ~~~~~~~~~~~~~lg~~------~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~~~-----------~~~----- 227 (383)
T 3ulq_A 177 EAYNIRLLQCHSLFATN------FLDLKQYEDAISHFQKAYSMAEAEKQP-------QLMG-----------RTL----- 227 (383)
T ss_dssp STTHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHTTCH-------HHHH-----------HHH-----
T ss_pred ccchHHHHHHHHHHHHH------HHHhcCHHHHHHHHHHHHHHHHHcCCh-------HHHH-----------HHH-----
Confidence 11 1 12346766667 88999999999999876543100 000 0000 112
Q ss_pred ccCCccchHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC
Q 002846 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD----EV-PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINP 420 (874)
Q Consensus 350 ~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~----Gv-~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~----Gi~P 420 (874)
..+-..|...|+.++|.+.|++.... +. .-...++..+...|.+.|++++|...+++.... +-..
T Consensus 228 ------~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 301 (383)
T 3ulq_A 228 ------YNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVI 301 (383)
T ss_dssp ------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred ------HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 55667788899999999999887761 33 334678899999999999999999999886643 1111
Q ss_pred CcccHHHHHHHHHhCCC---hhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 002846 421 RLRSYGPALSVFCNNGD---VDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (874)
Q Consensus 421 d~~tYn~LI~a~~k~G~---~~~A~~l~~eM~~~Gv~Pd-~~ty~~LI~~~~~~G~~d~A~~ll~~M~~ 485 (874)
....+..+-..|...|+ +++|..+++.. +..|+ ...+..|-..|...|+.++|...|++...
T Consensus 302 ~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 302 YLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 12235556667777888 77777777765 33333 34566788888999999999999988765
No 75
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.73 E-value=0.0015 Score=69.44 Aligned_cols=127 Identities=9% Similarity=-0.037 Sum_probs=84.4
Q ss_pred chHHHHHHhc-CCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcc------
Q 002846 356 EIRLSEDAKK-YAFQRGFEIYEKMCLD----EVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR------ 423 (874)
Q Consensus 356 n~lI~~~~k~-g~~~~A~~lf~~M~~~----Gv~Pd-~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~------ 423 (874)
+.+-..|... |++++|.+.|++.... +-.+. ..+|+.+...+...|++++|...|++...........
T Consensus 121 ~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 200 (292)
T 1qqe_A 121 FELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKD 200 (292)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 3444556665 8888888888876542 11111 3568889999999999999999999988764332222
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH------HHHHHHHHHH--hcCCchHHHHHHHHHH
Q 002846 424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP------ELEALLRVSV--EAGKGDRVYYLLHKLR 484 (874)
Q Consensus 424 tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~------ty~~LI~~~~--~~G~~d~A~~ll~~M~ 484 (874)
.|..+...+...|+.++|...|+...+ +.|+.. .+..|+.++. ..+++++|...|+.+.
T Consensus 201 ~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 201 YFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 456677778889999999999998765 234322 3444556554 3456777777776554
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.71 E-value=0.0017 Score=70.68 Aligned_cols=236 Identities=15% Similarity=0.000 Sum_probs=153.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCC
Q 002846 199 DMCSKRGDVMGAIRLYDKAQREGIKLGQY----HYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRD 274 (874)
Q Consensus 199 ~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~----tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~g 274 (874)
..+...|++++|+.++++.....-..+.. .++.+-..+. ..|++++|...+.-. .++....+
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~----------~~g~~~~A~~~~~~a----l~~~~~~~ 87 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH----------CKGELTRSLALMQQT----EQMARQHD 87 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHH----------HHTCHHHHHHHHHHH----HHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHH----------hcCcHHHHHHHHHHH----HHHHHhcC
Confidence 35567899999999999988643222222 3333334444 568999999988511 11112112
Q ss_pred CC--chhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcC----CC--CCeeeeccccHHHHHHhhhcCCCCcccccc
Q 002846 275 MD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG----QF--SNGHMKLNSQLLDGRSNLERGPDDQSRKKD 346 (874)
Q Consensus 275 i~--d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~G----i~--Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~ 346 (874)
.. -..+++.+-.. +...|++++|...+++..... -. |... ..+
T Consensus 88 ~~~~~~~~~~~la~~------~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~---------------------~~~-- 138 (373)
T 1hz4_A 88 VWHYALWSLIQQSEI------LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE---------------------FLV-- 138 (373)
T ss_dssp CHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHH---------------------HHH--
T ss_pred cHHHHHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHH---------------------HHH--
Confidence 11 11224455555 788999999999998776531 10 1000 011
Q ss_pred cccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc
Q 002846 347 WSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVP----MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422 (874)
Q Consensus 347 w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~----Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~ 422 (874)
..+-..+...|++++|...+++.....-. ....+|..+...+...|++++|...+++.....-.++.
T Consensus 139 ---------~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~ 209 (373)
T 1hz4_A 139 ---------RIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKY 209 (373)
T ss_dssp ---------HHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCC
T ss_pred ---------HHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCc
Confidence 44556778899999999999987653211 12467888999999999999999999988654222222
Q ss_pred -ccHHH-----HHHHHHhCCChhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 423 -RSYGP-----ALSVFCNNGDVDKACSVEEHMLEHGVYP---EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 423 -~tYn~-----LI~a~~k~G~~~~A~~l~~eM~~~Gv~P---d~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
..+.. .+..+...|+.++|...++........+ ....+..+...+...|+.++|..++++....
T Consensus 210 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~ 282 (373)
T 1hz4_A 210 HSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN 282 (373)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 12222 2234778999999999998876543211 1335677788889999999999999887653
No 77
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.68 E-value=0.0091 Score=75.66 Aligned_cols=245 Identities=12% Similarity=-0.006 Sum_probs=177.6
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 002846 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (874)
Q Consensus 160 ~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~ 239 (874)
....++.++|.++.++.. . ..+|..+=.++-+.|++++|+..|.+. -|...|.-++.+|.
T Consensus 1086 ie~i~nldrAiE~Aervn------~------p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~-- 1145 (1630)
T 1xi4_A 1086 IEHIGNLDRAYEFAERCN------E------PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAAN-- 1145 (1630)
T ss_pred HHHHhhHHHHHHHHHhcC------C------HHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHH--
Confidence 446678888998888661 1 268888999999999999999999764 46778888999998
Q ss_pred ccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCe
Q 002846 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG 319 (874)
Q Consensus 240 ~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~ 319 (874)
+.|++++|.+.+. |..+ -.++....+.+.-+ |++.+++++...... .|+.
T Consensus 1146 --------~lGkyEEAIeyL~--------mArk-~~~e~~Idt~Lafa------YAKl~rleele~fI~-------~~n~ 1195 (1630)
T 1xi4_A 1146 --------TSGNWEELVKYLQ--------MARK-KARESYVETELIFA------LAKTNRLAELEEFIN-------GPNN 1195 (1630)
T ss_pred --------HcCCHHHHHHHHH--------HHHh-hcccccccHHHHHH------HHhhcCHHHHHHHHh-------CCCH
Confidence 8899999999994 4332 11233333447777 888888886444321 2233
Q ss_pred eeec--------cccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 002846 320 HMKL--------NSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLT 391 (874)
Q Consensus 320 ~ty~--------~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn 391 (874)
..|. .|+.++|..+|... ..| ..+...|++.|++++|.+.+.+- -+..+|.
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA----~ny-----------~rLA~tLvkLge~q~AIEaarKA------~n~~aWk 1254 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNV----SNF-----------GRLASTLVHLGEYQAAVDGARKA------NSTRTWK 1254 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh----hHH-----------HHHHHHHHHhCCHHHHHHHHHHh------CCHHHHH
Confidence 2222 78889999888874 356 88999999999999999999875 3678999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-
Q 002846 392 AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA- 470 (874)
Q Consensus 392 ~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~- 470 (874)
-+-.+|...|++..|....-. +.-+...+..++..|-+.|.+++|..+++.-.... .-....|+-|-..|++.
T Consensus 1255 ev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~ 1328 (1630)
T 1xi4_A 1255 EVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK 1328 (1630)
T ss_pred HHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCC
Confidence 999999999999999887653 33345566789999999999999999997665433 23444555555566554
Q ss_pred -CCchHHHHHHH
Q 002846 471 -GKGDRVYYLLH 481 (874)
Q Consensus 471 -G~~d~A~~ll~ 481 (874)
+++.++.++|.
T Consensus 1329 peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1329 PQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHHHHHH
Confidence 34445555544
No 78
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=97.65 E-value=0.0014 Score=75.12 Aligned_cols=165 Identities=8% Similarity=-0.100 Sum_probs=135.5
Q ss_pred chhhhHhhhcCcccChhhhhcCCh-HHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCcc
Q 002846 277 NNGQLDYGSSPMIDKLESNSSYRF-DDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDAD 355 (874)
Q Consensus 277 d~vtyn~LI~~~~~~~~~~~~g~~-e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~ 355 (874)
+...|..+-.. +...|++ ++|...|.+..... |+. ...|
T Consensus 101 ~a~~~~~lg~~------~~~~g~~~~~A~~~~~~al~~~--p~~---------------------~~a~----------- 140 (474)
T 4abn_A 101 EAQALMLKGKA------LNVTPDYSPEAEVLLSKAVKLE--PEL---------------------VEAW----------- 140 (474)
T ss_dssp CHHHHHHHHHH------HTSSSSCCHHHHHHHHHHHHHC--TTC---------------------HHHH-----------
T ss_pred hHHHHHHHHHH------HHhccccHHHHHHHHHHHHhhC--CCC---------------------HHHH-----------
Confidence 44455555555 7888999 99999999887752 321 1122
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---------CChhHHHHHHHHHHHCCCCCCcccHH
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM---------GDGDMAFDMVKRMKSLGINPRLRSYG 426 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~---------G~~d~A~~l~~~M~~~Gi~Pd~~tYn 426 (874)
..+-..|.+.|++++|.+.|++..... |+..++..+-..|... |++++|...|++..+.. .-+...|.
T Consensus 141 ~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 217 (474)
T 4abn_A 141 NQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWY 217 (474)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 667788899999999999999988764 7788999999999999 99999999999988763 23467778
Q ss_pred HHHHHHHhC--------CChhHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 427 PALSVFCNN--------GDVDKACSVEEHMLEHGVYP----EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 427 ~LI~a~~k~--------G~~~~A~~l~~eM~~~Gv~P----d~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
.+-..|... |++++|.+.|+...+.. | +...|..|-..|...|++++|...|.+....
T Consensus 218 ~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 218 ILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD--RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC--GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 788888888 99999999999998853 5 7888999999999999999999999998876
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=97.49 E-value=0.0031 Score=63.60 Aligned_cols=142 Identities=9% Similarity=-0.006 Sum_probs=104.8
Q ss_pred hhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHH
Q 002846 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (874)
Q Consensus 294 ~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~ 373 (874)
+...|++++|...|.+.....-.++...+ ..+-..+.+.|++++|.+
T Consensus 17 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~A~~ 63 (228)
T 4i17_A 17 ALNAKNYAVAFEKYSEYLKLTNNQDSVTA---------------------------------YNCGVCADNIKKYKEAAD 63 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTTTCCHHHH---------------------------------HHHHHHHHHTTCHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHhccCCCCcHHH---------------------------------HHHHHHHHHhhcHHHHHH
Confidence 67789999999999988776432333333 345667778899999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc--------ccHHHHHHHHHhCCChhHHHHHH
Q 002846 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL--------RSYGPALSVFCNNGDVDKACSVE 445 (874)
Q Consensus 374 lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~--------~tYn~LI~a~~k~G~~~~A~~l~ 445 (874)
.|++..... +-+..+|..+-..|...|++++|...+++..+. .|+. ..|..+=..+...|+.++|.+.|
T Consensus 64 ~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~ 140 (228)
T 4i17_A 64 YFDIAIKKN-YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENY 140 (228)
T ss_dssp HHHHHHHTT-CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhC-cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHH
Confidence 999888754 225678888999999999999999999988765 3443 34555666777889999999999
Q ss_pred HHHHHcCCCCC---HHHHHHHHHHHHhcCCc
Q 002846 446 EHMLEHGVYPE---EPELEALLRVSVEAGKG 473 (874)
Q Consensus 446 ~eM~~~Gv~Pd---~~ty~~LI~~~~~~G~~ 473 (874)
+...+. .|+ ...|..|-..|...|..
T Consensus 141 ~~al~~--~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 141 KHATDV--TSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHTTS--SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhc--CCCcccHHHHHHHHHHHHHHHHH
Confidence 998774 465 45566666666665554
No 80
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.49 E-value=0.0071 Score=67.76 Aligned_cols=266 Identities=9% Similarity=-0.014 Sum_probs=167.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C--CCC-CHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhc
Q 002846 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQRE-----G--IKL-GQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVS 262 (874)
Q Consensus 191 ~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~-----G--i~p-d~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~ 262 (874)
...||.|=..+...|+.++|++.|++..+. + ..| ...+|+.+=.+|. ..|+.++|...+.-.
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~----------~~g~~~~A~~~~~ka 120 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYY----------HMGRLSDVQIYVDKV 120 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHH----------HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHH----------HcCChHHHHHHHHHH
Confidence 367898888999999999999999987531 1 122 3568888888888 789999999888511
Q ss_pred ccCchhhhhcC----CCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeec------------ccc
Q 002846 263 TMNSTELGDSR----DMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL------------NSQ 326 (874)
Q Consensus 263 ~~~s~em~~~~----gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~------------~g~ 326 (874)
.++.... +.....+|+.+-.+ ......+++++|...|++.... .|+...+. .++
T Consensus 121 ----~~i~~~~~~~~~~~~~~~~~~~g~~----~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~ 190 (472)
T 4g1t_A 121 ----KHVCEKFSSPYRIESPELDCEEGWT----RLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPP 190 (472)
T ss_dssp ----HHHHHHSCCSSCCCCHHHHHHHHHH----HHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCC
T ss_pred ----HHHhHhcccccchhhHHHHHHHHHH----HHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchH
Confidence 1121110 11112233332222 0022345789999999988765 46543322 234
Q ss_pred HHHHHHhhhcC---CCCc-ccccccccccCCccchHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 002846 327 LLDGRSNLERG---PDDQ-SRKKDWSIDNQDADEIRLSEDA----KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAM 398 (874)
Q Consensus 327 ~~eA~~l~~~m---~pd~-~ty~~w~i~~~~~~n~lI~~~~----k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~ 398 (874)
..+|...+.+. .|+. ..+ ..+-..+. ..++.++|.+++++..... +.+..++..+...|.
T Consensus 191 ~~~al~~~~~al~l~p~~~~~~-----------~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~ 258 (472)
T 4g1t_A 191 SQNAIDPLRQAIRLNPDNQYLK-----------VLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYR 258 (472)
T ss_dssp CCCTHHHHHHHHHHCSSCHHHH-----------HHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCcchHHH-----------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHH
Confidence 44555555443 4432 222 22222333 3467789999998877653 446778899999999
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCc-ccHHHHHHHHHh-------------------CCChhHHHHHHHHHHHcCCCCCHH
Q 002846 399 SMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCN-------------------NGDVDKACSVEEHMLEHGVYPEEP 458 (874)
Q Consensus 399 ~~G~~d~A~~l~~~M~~~Gi~Pd~-~tYn~LI~a~~k-------------------~G~~~~A~~l~~eM~~~Gv~Pd~~ 458 (874)
..|++++|...+++..+. .|+. .+|..+-..|.. .+..++|...|+...+.. ..+..
T Consensus 259 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~ 335 (472)
T 4g1t_A 259 RKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFR 335 (472)
T ss_dssp HTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCC
T ss_pred HcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cchhh
Confidence 999999999999998765 3553 334433333321 123566777777766543 22345
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCChh
Q 002846 459 ELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (874)
Q Consensus 459 ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~ 493 (874)
.+..+-..+...|++++|...|++.... .+.+.
T Consensus 336 ~~~~lg~~~~~~~~~~~A~~~~~kaL~~--~~~~~ 368 (472)
T 4g1t_A 336 VCSILASLHALADQYEEAEYYFQKEFSK--ELTPV 368 (472)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHS--CCCHH
T ss_pred hhhhHHHHHHHhccHHHHHHHHHHHHhc--CCCCh
Confidence 6777888899999999999999998876 55554
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.43 E-value=0.0024 Score=77.38 Aligned_cols=162 Identities=13% Similarity=0.083 Sum_probs=130.0
Q ss_pred hhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchH
Q 002846 279 GQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIR 358 (874)
Q Consensus 279 vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~l 358 (874)
..|+.|=.. +.+.|++++|...|++..+. .|+.. ..| +.+
T Consensus 10 ~al~nLG~~------~~~~G~~~eAi~~~~kAl~l--~P~~~---------------------~a~-----------~nL 49 (723)
T 4gyw_A 10 DSLNNLANI------KREQGNIEEAVRLYRKALEV--FPEFA---------------------AAH-----------SNL 49 (723)
T ss_dssp HHHHHHHHH------HHHTTCHHHHHHHHHHHHHH--CSCCH---------------------HHH-----------HHH
T ss_pred HHHHHHHHH------HHHcCCHHHHHHHHHHHHHh--CCCCH---------------------HHH-----------HHH
Confidence 346666566 88999999999999987765 23321 122 666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhCCC
Q 002846 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGD 437 (874)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd-~~tYn~LI~a~~k~G~ 437 (874)
=..|.+.|++++|.+.|++..+.. +-+..+|..|-.+|...|++++|.+.|++..+. .|+ ...|+.+-..|.+.|+
T Consensus 50 g~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~ 126 (723)
T 4gyw_A 50 ASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGN 126 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 678889999999999999887753 225778999999999999999999999988765 454 5678888899999999
Q ss_pred hhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 002846 438 VDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (874)
Q Consensus 438 ~~~A~~l~~eM~~~Gv~P-d~~ty~~LI~~~~~~G~~d~A~~ll~~M~~ 485 (874)
+++|.+.|+...+.. | +...|..|...|...|++++|.+.+++..+
T Consensus 127 ~~eAi~~~~~Al~l~--P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 127 IPEAIASYRTALKLK--PDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 999999999988753 5 467888899999999999999988887654
No 82
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=97.42 E-value=0.00024 Score=72.94 Aligned_cols=131 Identities=14% Similarity=0.075 Sum_probs=105.0
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC------CCCC-C
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLD------EVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL------GINP-R 421 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~------Gv~P-d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~------Gi~P-d 421 (874)
..+-..|...|++++|.+.|++.... +-.| ...+|..+...|...|++++|...+.+.... .-.| .
T Consensus 47 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 126 (283)
T 3edt_B 47 NILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDV 126 (283)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 66778888999999999999988754 2222 4568899999999999999999999987754 1112 3
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 422 LRSYGPALSVFCNNGDVDKACSVEEHMLEH------GVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 422 ~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~------Gv~P-d~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
..+|..+-..|...|++++|..++++..+. +-.| ....+..|-..|...|++++|..+|.+....
T Consensus 127 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 127 AKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 567788888999999999999999998765 1123 3567888889999999999999999988763
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.41 E-value=0.0014 Score=72.07 Aligned_cols=233 Identities=9% Similarity=-0.031 Sum_probs=153.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCC
Q 002846 200 MCSKRGDVMGAIRLYDKAQREG-IKLG----QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRD 274 (874)
Q Consensus 200 a~~k~G~~~~Al~lf~~M~~~G-i~pd----~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~g 274 (874)
.+...|++++|+..|++....- -.++ ..+|..+=..|. ..|+.+.|...+.-. -++....+
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~----------~~~~~~~A~~~~~~a----l~~~~~~~ 175 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYY----------HMKQTHVSMYHILQA----LDIYQNHP 175 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH----------HTTCHHHHHHHHHHH----HHHHHTST
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH----------HcCCcHHHHHHHHHH----HHHHHhCC
Confidence 3568899999999999998531 1133 234555555555 678999988888511 11111111
Q ss_pred C-C--chhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCC-CCeeeeccccHHHHHHhhhcCCCCcccccccccc
Q 002846 275 M-D--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQF-SNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID 350 (874)
Q Consensus 275 i-~--d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~-Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~ 350 (874)
- . ...+++.+=.. |...|++++|.+.|.+....--. ++.. ..+ .++
T Consensus 176 ~~~~~~~~~~~~lg~~------y~~~~~~~~A~~~~~~al~~~~~~~~~~-------~~~-----------~~~------ 225 (378)
T 3q15_A 176 LYSIRTIQSLFVIAGN------YDDFKHYDKALPHLEAALELAMDIQNDR-------FIA-----------ISL------ 225 (378)
T ss_dssp TCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHTTCHH-------HHH-----------HHH------
T ss_pred CchhhHHHHHHHHHHH------HHHhCCHHHHHHHHHHHHHHHHHcCCHH-------HHH-----------HHH------
Confidence 1 1 13346777667 88999999999998876543100 0000 000 111
Q ss_pred cCCccchHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----
Q 002846 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCL-----DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR---- 421 (874)
Q Consensus 351 ~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~-----~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd---- 421 (874)
+.+=..|...|+.++|.+.|++... .. +....++..+...+.+.|+.++|...+++..+..-..+
T Consensus 226 -----~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 299 (378)
T 3q15_A 226 -----LNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFY 299 (378)
T ss_dssp -----HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCH
T ss_pred -----HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4555677889999999999988776 33 23367889999999999999999999998876532211
Q ss_pred cccHHHHHHHHHhCCC---hhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 002846 422 LRSYGPALSVFCNNGD---VDKACSVEEHMLEHGVYPEE-PELEALLRVSVEAGKGDRVYYLLHKLRT 485 (874)
Q Consensus 422 ~~tYn~LI~a~~k~G~---~~~A~~l~~eM~~~Gv~Pd~-~ty~~LI~~~~~~G~~d~A~~ll~~M~~ 485 (874)
...+..+-..|...|+ +.+|...++. .+..|+. ..+..|-..|...|+.++|...|.+...
T Consensus 300 ~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 300 KELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2234444445556777 7777777766 3333333 3556777888999999999999988764
No 84
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.26 E-value=0.0087 Score=63.94 Aligned_cols=115 Identities=14% Similarity=0.141 Sum_probs=71.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC-cccHHHHH
Q 002846 360 SEDAKKYAFQRGFEIYEKMCLD----EVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINPR-LRSYGPAL 429 (874)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~----Gv~P-d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~----Gi~Pd-~~tYn~LI 429 (874)
..|.. |++++|++.|++.... |-.+ -..+++.+-..|...|++++|...|++.... +..+. ...|..+.
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 34445 7777777777665432 2111 1357788888889999999999998877653 21111 12455566
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCC---H---HHHHHHHHHHHhcCCchHHHHH
Q 002846 430 SVFCNNGDVDKACSVEEHMLEHGVYPE---E---PELEALLRVSVEAGKGDRVYYL 479 (874)
Q Consensus 430 ~a~~k~G~~~~A~~l~~eM~~~Gv~Pd---~---~ty~~LI~~~~~~G~~d~A~~l 479 (874)
..+...|+.++|...|++.. . .|+ . .....|+.++ ..|+.+.+..+
T Consensus 203 ~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 203 LVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 66667799999999998876 2 232 1 2334455544 56666555553
No 85
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.24 E-value=0.0027 Score=69.69 Aligned_cols=235 Identities=9% Similarity=-0.072 Sum_probs=156.4
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCC---C-CHHHHHH
Q 002846 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRS-EQFQLRVELDMCSKRGDVMGAIRLYDKAQRE--GIK---L-GQYHYNV 231 (874)
Q Consensus 159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~P-d~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~--Gi~---p-d~~tyn~ 231 (874)
.....++.++|...|+.....- +..+..+ ...+|..+-..|...|+++.|+..|.+..+. ... + ...+++.
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKL--IFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTG--GGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHH--hhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 3456789999999999985431 1111122 2357788888999999999999999998742 111 1 1235555
Q ss_pred HHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCC--chhhhHhhhcCcccChhhhhcCChHHHHHHHHH
Q 002846 232 LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNE 309 (874)
Q Consensus 232 LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~--d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~e 309 (874)
+=..|. ..|+.++|...|.-. -++....+-. -..+|+.+-.. |...|++++|...|.+
T Consensus 190 lg~~~~----------~~g~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~lg~~------y~~~g~~~~A~~~~~~ 249 (383)
T 3ulq_A 190 FATNFL----------DLKQYEDAISHFQKA----YSMAEAEKQPQLMGRTLYNIGLC------KNSQSQYEDAIPYFKR 249 (383)
T ss_dssp HHHHHH----------HTTCHHHHHHHHHHH----HHHHHHTTCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHH
T ss_pred HHHHHH----------HhcCHHHHHHHHHHH----HHHHHHcCChHHHHHHHHHHHHH------HHHCCCHHHHHHHHHH
Confidence 555666 779999999998511 1121211111 12356667677 8899999999999987
Q ss_pred HHHc----CCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHC----
Q 002846 310 KENL----GQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD---- 381 (874)
Q Consensus 310 M~~~----Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~---- 381 (874)
.... +-.|+. + .++ ..+-..+.+.|+.++|.+.|++....
T Consensus 250 al~~~~~~~~~~~~----------~-----------~~~-----------~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 297 (383)
T 3ulq_A 250 AIAVFEESNILPSL----------P-----------QAY-----------FLITQIHYKLGKIDKAHEYHSKGMAYSQKA 297 (383)
T ss_dssp HHHHHHHTTCGGGH----------H-----------HHH-----------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccchhH----------H-----------HHH-----------HHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 7652 111111 0 112 56667888999999999999876642
Q ss_pred CCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhCCChhHHHHHHHHHHH
Q 002846 382 EVPMNEASLTAVGRMAMSMGD---GDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (874)
Q Consensus 382 Gv~Pd~~tyn~LI~~~~~~G~---~d~A~~l~~~M~~~Gi~Pd-~~tYn~LI~a~~k~G~~~~A~~l~~eM~~ 450 (874)
+-......+..|-..+...|+ +++|+.++++. +..|+ ...+..+-..|...|+.++|.+.|+...+
T Consensus 298 ~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 298 GDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp TCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 212223446778888888998 77777777654 33343 33566677888999999999999988754
No 86
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.22 E-value=0.0018 Score=70.21 Aligned_cols=126 Identities=8% Similarity=-0.039 Sum_probs=99.4
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-----CcccHHHHH
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEV-PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-----RLRSYGPAL 429 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv-~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~P-----d~~tYn~LI 429 (874)
..+-..+...|+.++|++++.+-...|- .-+...+..++..+.+.|+++.|.++++.|.+. .| +..+..-|.
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~La 181 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLA 181 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHH
Confidence 4555778889999999999998766553 236778889999999999999999999999875 46 245555566
Q ss_pred HHHHh--CC--ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 002846 430 SVFCN--NG--DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (874)
Q Consensus 430 ~a~~k--~G--~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~ 485 (874)
.++.. .| +..+|+.+|+++.+.. |+..+...|+.++.+.|++++|...|+.+.+
T Consensus 182 ea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 182 ESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred HHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56332 34 9999999999997754 7655666777788999999999999997765
No 87
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.22 E-value=0.0056 Score=54.04 Aligned_cols=97 Identities=16% Similarity=0.134 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 002846 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVS 467 (874)
Q Consensus 388 ~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~ 467 (874)
.+|..+...+...|++++|.++++++.... ..+...+..+...+.+.|+.++|..+|+.+.... ..+...+..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 344444555555555555555555544431 1223344444555555555555555555554432 12344555555555
Q ss_pred HhcCCchHHHHHHHHHHhc
Q 002846 468 VEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 468 ~~~G~~d~A~~ll~~M~~~ 486 (874)
...|++++|..+|+++...
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 5555555555555555443
No 88
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=97.19 E-value=0.018 Score=57.83 Aligned_cols=194 Identities=10% Similarity=-0.042 Sum_probs=112.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhh
Q 002846 190 EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTEL 269 (874)
Q Consensus 190 d~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em 269 (874)
|...|..+=..+.+.|++++|+..|++..+..-.++...+..+-.++. ..|+.++|...|. ..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~----------~~~~~~~A~~~~~-------~a 68 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCAD----------NIKKYKEAADYFD-------IA 68 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH----------HTTCHHHHHHHHH-------HH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHH----------HhhcHHHHHHHHH-------HH
Confidence 445677777788899999999999999987654356655555444444 4566666666663 11
Q ss_pred hhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCccccccccc
Q 002846 270 GDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSI 349 (874)
Q Consensus 270 ~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i 349 (874)
... .-.+...|
T Consensus 69 l~~-~p~~~~~~-------------------------------------------------------------------- 79 (228)
T 4i17_A 69 IKK-NYNLANAY-------------------------------------------------------------------- 79 (228)
T ss_dssp HHT-TCSHHHHH--------------------------------------------------------------------
T ss_pred HHh-CcchHHHH--------------------------------------------------------------------
Confidence 111 00111222
Q ss_pred ccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-
Q 002846 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE-------ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR- 421 (874)
Q Consensus 350 ~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~-------~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd- 421 (874)
..+-..|.+.|+.++|.+.|++..... +-+. .+|..+-..+...|++++|.+.|++..+. .|+
T Consensus 80 ------~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~ 150 (228)
T 4i17_A 80 ------IGKSAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKK 150 (228)
T ss_dssp ------HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHH
T ss_pred ------HHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCc
Confidence 333344555666666666666655432 1122 34666667777888888888888877654 454
Q ss_pred --cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 422 --LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 422 --~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
...|..+-..|... +..+++.+...+ ..+...|..+.. ...+.+++|...|++..+.
T Consensus 151 ~~~~~~~~l~~~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 151 WKTDALYSLGVLFYNN-----GADVLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHHHHHHHHHH-----HHHHHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHH-----HHHHHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhc
Confidence 23444444444333 334444444432 223445544443 2345678888888888775
No 89
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.16 E-value=0.0085 Score=59.26 Aligned_cols=124 Identities=10% Similarity=-0.044 Sum_probs=104.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCC
Q 002846 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (874)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~ 437 (874)
+-..+...|++++|.+.|++. +.|+..+|..+...|...|++++|...|++..... ..+...|..+-..|...|+
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 345667899999999999876 46789999999999999999999999999988763 2356678888889999999
Q ss_pred hhHHHHHHHHHHHcC--------------CCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 438 VDKACSVEEHMLEHG--------------VYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 438 ~~~A~~l~~eM~~~G--------------v~P-d~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
.++|.+.|+...+.. ..| ....|..+-..|...|+.++|...|++....
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 999999999998743 111 2267788888899999999999999999876
No 90
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.16 E-value=0.0049 Score=71.87 Aligned_cols=128 Identities=9% Similarity=-0.070 Sum_probs=108.1
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhC
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~ 435 (874)
..+-..+.+.|++++|.+.|++..+.. +-+..+|..+...|...|++++|.+.+++..+.. .-+...|..+-..|.+.
T Consensus 27 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 104 (568)
T 2vsy_A 27 LMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGHALEDA 104 (568)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc
Confidence 566677888999999999999988754 3467889999999999999999999999988763 23456788888899999
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHhc
Q 002846 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA---GKGDRVYYLLHKLRTS 486 (874)
Q Consensus 436 G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~---G~~d~A~~ll~~M~~~ 486 (874)
|+.++|.+.|+...+.. .-+...+..|...+... |+.++|...+++..+.
T Consensus 105 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 105 GQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99999999999988754 23567888888899999 9999999999998876
No 91
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.14 E-value=0.009 Score=52.64 Aligned_cols=107 Identities=19% Similarity=0.204 Sum_probs=85.3
Q ss_pred hHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCC
Q 002846 357 IRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG 436 (874)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G 436 (874)
.+...+...|++++|.++|+++.... +.+..++..+...+...|++++|..+++++.... ..+..++..+...|...|
T Consensus 14 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 91 (125)
T 1na0_A 14 NLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQG 91 (125)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhc
Confidence 34567788999999999999998754 3467889999999999999999999999998763 345677888899999999
Q ss_pred ChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 002846 437 DVDKACSVEEHMLEHGVYPE-EPELEALLRVS 467 (874)
Q Consensus 437 ~~~~A~~l~~eM~~~Gv~Pd-~~ty~~LI~~~ 467 (874)
+.++|...|+.+.... |+ ...+..|-..+
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 92 DYDEAIEYYQKALELD--PNNAEAKQNLGNAK 121 (125)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC--CCcHHHHHHHHHHH
Confidence 9999999999988754 43 34444443333
No 92
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.10 E-value=0.0082 Score=72.69 Aligned_cols=61 Identities=18% Similarity=0.159 Sum_probs=43.2
Q ss_pred CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHh
Q 002846 188 RSE-QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG-QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFE 260 (874)
Q Consensus 188 ~Pd-~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd-~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~ 260 (874)
.|+ ...|+.|=..|.+.|++++|++.|++..+. .|+ ...|+.|=.+|. +.|+.++|...|.
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~----------~~g~~~eA~~~~~ 67 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQ----------QQGKLQEALMHYK 67 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHH----------HTTCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH----------HcCCHHHHHHHHH
Confidence 343 467888888999999999999999998864 344 455655555555 5566666666663
No 93
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.08 E-value=0.0082 Score=64.96 Aligned_cols=159 Identities=9% Similarity=0.033 Sum_probs=115.4
Q ss_pred hhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHH
Q 002846 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (874)
Q Consensus 294 ~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~ 373 (874)
+...|++++|++++.+-...|-.++ -.++. ..++..+.+.|+.+.|.+
T Consensus 110 ~~~~g~~eeAL~~l~~~i~~~~~~~--------~lea~------------------------~l~vqi~L~~~r~d~A~k 157 (310)
T 3mv2_B 110 QAILGDLDKSLETCVEGIDNDEAEG--------TTELL------------------------LLAIEVALLNNNVSTAST 157 (310)
T ss_dssp HHHHTCHHHHHHHHHHHHTSSCSTT--------HHHHH------------------------HHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHhccCCCcC--------cHHHH------------------------HHHHHHHHHCCCHHHHHH
Confidence 8888999999999987654431101 11111 667889999999999999
Q ss_pred HHHHHHHCCCCC-----CHHHHHHHHHHHH--hcC--ChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHH
Q 002846 374 IYEKMCLDEVPM-----NEASLTAVGRMAM--SMG--DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSV 444 (874)
Q Consensus 374 lf~~M~~~Gv~P-----d~~tyn~LI~~~~--~~G--~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l 444 (874)
++++|.+. .| +..+..-|+.++. ..| +..+|+.+|+++... .|+..+-..++.++.+.|++++|.++
T Consensus 158 ~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~ 233 (310)
T 3mv2_B 158 IFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGI 233 (310)
T ss_dssp HHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHH
Confidence 99999875 46 3677777777733 334 899999999998765 36544455667788899999999999
Q ss_pred HHHHHHc-----CC----CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCCh
Q 002846 445 EEHMLEH-----GV----YPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP 492 (874)
Q Consensus 445 ~~eM~~~-----Gv----~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp 492 (874)
++.+.+. .. .-|..++.-+|......|+ +|.+++.++... .|..
T Consensus 234 L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~h 286 (310)
T 3mv2_B 234 VELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEH 286 (310)
T ss_dssp HHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCC
T ss_pred HHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCC
Confidence 9977653 11 2355666566666666676 899999999987 4443
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.03 E-value=0.013 Score=60.39 Aligned_cols=162 Identities=10% Similarity=0.013 Sum_probs=118.0
Q ss_pred hhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHH
Q 002846 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (874)
Q Consensus 294 ~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~ 373 (874)
+.+.|++++|...|++..... |+.... . ..+ ..+-..|.+.|++++|..
T Consensus 25 ~~~~g~~~~A~~~~~~~l~~~--p~~~~~-----~-------------~a~-----------~~lg~~~~~~~~~~~A~~ 73 (261)
T 3qky_A 25 FYNQGKYDRAIEYFKAVFTYG--RTHEWA-----A-------------DAQ-----------FYLARAYYQNKEYLLAAS 73 (261)
T ss_dssp HHHTTCHHHHHHHHHHHGGGC--SCSTTH-----H-------------HHH-----------HHHHHHHHHTTCHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC--CCCcch-----H-------------HHH-----------HHHHHHHHHhCcHHHHHH
Confidence 678899999999999987753 322000 0 011 344567788999999999
Q ss_pred HHHHHHHCCC-CCC-HHHHHHHHHHHHh--------cCChhHHHHHHHHHHHCCCCCCc-ccH-----------------
Q 002846 374 IYEKMCLDEV-PMN-EASLTAVGRMAMS--------MGDGDMAFDMVKRMKSLGINPRL-RSY----------------- 425 (874)
Q Consensus 374 lf~~M~~~Gv-~Pd-~~tyn~LI~~~~~--------~G~~d~A~~l~~~M~~~Gi~Pd~-~tY----------------- 425 (874)
.|+......- .|. ...+..+-.++.. .|++++|...|++..+. .|+. ...
T Consensus 74 ~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~~~~~~ 151 (261)
T 3qky_A 74 EYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAKLARKQ 151 (261)
T ss_dssp HHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHHHHHHH
Confidence 9999887531 122 4567777788888 99999999999998875 3543 333
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhc----------CCchHHHHHHHHHHhcCCCCC
Q 002846 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPE----EPELEALLRVSVEA----------GKGDRVYYLLHKLRTSVRKVS 491 (874)
Q Consensus 426 n~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd----~~ty~~LI~~~~~~----------G~~d~A~~ll~~M~~~~~~~s 491 (874)
-.+-..|.+.|++++|...|+...+.. |+ ...+..+..+|... |++++|...|.++... .|.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~ 227 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAY--PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPD 227 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHC--CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCC
Confidence 234567788999999999999998753 43 34666777777755 8889999999999887 554
Q ss_pred h
Q 002846 492 P 492 (874)
Q Consensus 492 p 492 (874)
.
T Consensus 228 ~ 228 (261)
T 3qky_A 228 S 228 (261)
T ss_dssp C
T ss_pred C
Confidence 3
No 95
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=96.99 E-value=0.0098 Score=65.19 Aligned_cols=234 Identities=9% Similarity=-0.097 Sum_probs=154.0
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CC---CC-CHHHHHHH
Q 002846 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRS-EQFQLRVELDMCSKRGDVMGAIRLYDKAQRE--GI---KL-GQYHYNVL 232 (874)
Q Consensus 160 ~~k~~~~~~A~~vf~eM~~~g~k~~~g~~P-d~~tyn~LI~a~~k~G~~~~Al~lf~~M~~~--Gi---~p-d~~tyn~L 232 (874)
....++..+|...|++...... ..+..| ...+|..+-..|...|+++.|+..+.+.... .. .+ ...+++.+
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELP--FVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGG--GCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHh--hCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 3467899999999999854321 111112 2356777888999999999999999998742 11 11 13355555
Q ss_pred HHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCC--chhhhHhhhcCcccChhhhhcCChHHHHHHHHHH
Q 002846 233 LYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310 (874)
Q Consensus 233 L~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~--d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM 310 (874)
=.+|. ..|+.++|...|.-. -++....+-. ...+++.+=.. |...|++++|...|.+.
T Consensus 189 g~~y~----------~~~~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~lg~~------y~~~~~~~~A~~~~~~a 248 (378)
T 3q15_A 189 AGNYD----------DFKHYDKALPHLEAA----LELAMDIQNDRFIAISLLNIANS------YDRSGDDQMAVEHFQKA 248 (378)
T ss_dssp HHHHH----------HTTCHHHHHHHHHHH----HHHHHHTTCHHHHHHHHHHHHHH------HHHHTCHHHHHHHHHHH
T ss_pred HHHHH----------HhCCHHHHHHHHHHH----HHHHHHcCCHHHHHHHHHHHHHH------HHHCCCHHHHHHHHHHH
Confidence 55555 789999999998511 1121211111 12346666666 88999999999999877
Q ss_pred HHcC---CCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHC----CC
Q 002846 311 ENLG---QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD----EV 383 (874)
Q Consensus 311 ~~~G---i~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~----Gv 383 (874)
.... -.|+. + .++ ..+-..+.+.|+.++|.+.|++.... +-
T Consensus 249 l~~~~~~~~~~~----------~-----------~~~-----------~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 296 (378)
T 3q15_A 249 AKVSREKVPDLL----------P-----------KVL-----------FGLSWTLCKAGQTQKAFQFIEEGLDHITARSH 296 (378)
T ss_dssp HHHHHHHCGGGH----------H-----------HHH-----------HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCC
T ss_pred HHHHHhhCChhH----------H-----------HHH-----------HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC
Confidence 6520 00110 1 111 55667888999999999999987763 22
Q ss_pred CCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHCCCCCCc-ccHHHHHHHHHhCCChhHHHHHHHHHHH
Q 002846 384 PMNEASLTAVGRMAMSMGD---GDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKACSVEEHMLE 450 (874)
Q Consensus 384 ~Pd~~tyn~LI~~~~~~G~---~d~A~~l~~~M~~~Gi~Pd~-~tYn~LI~a~~k~G~~~~A~~l~~eM~~ 450 (874)
......++.+-..+...++ +++|+..+++ .+..|+. ..+..+-..|...|+.++|...|+...+
T Consensus 297 ~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 297 KFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp SCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2234566777777778888 7777777765 3333333 3455677888899999999999988754
No 96
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=96.95 E-value=0.0084 Score=56.26 Aligned_cols=126 Identities=12% Similarity=0.045 Sum_probs=92.4
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhC
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~ 435 (874)
..+-..+...|++++|...|+...... +.+..++..+...+...|++++|...+++..... ..+...|..+-..+...
T Consensus 17 ~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~ 94 (166)
T 1a17_A 17 KTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMAL 94 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHh
Confidence 445566778899999999998877653 3367888888889999999999999998877652 23456677777788889
Q ss_pred CChhHHHHHHHHHHHcCCCC-CHHHHH--HHHHHHHhcCCchHHHHHHHHHHh
Q 002846 436 GDVDKACSVEEHMLEHGVYP-EEPELE--ALLRVSVEAGKGDRVYYLLHKLRT 485 (874)
Q Consensus 436 G~~~~A~~l~~eM~~~Gv~P-d~~ty~--~LI~~~~~~G~~d~A~~ll~~M~~ 485 (874)
|+.++|...|+...+.. | +...+. .+...+.+.|++++|..++.....
T Consensus 95 ~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 95 GKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp TCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999998887753 3 333443 333336677888888888776543
No 97
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=96.89 E-value=0.024 Score=57.39 Aligned_cols=158 Identities=9% Similarity=0.012 Sum_probs=109.3
Q ss_pred hhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHH
Q 002846 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (874)
Q Consensus 294 ~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~ 373 (874)
+.+.|++++|...|+++.... |+.... .+ .+ ..+-..|.+.|++++|..
T Consensus 14 ~~~~g~~~~A~~~~~~~~~~~--p~~~~~-----~~-------------a~-----------~~lg~~~~~~~~~~~A~~ 62 (225)
T 2yhc_A 14 KLQDGNWRQAITQLEALDNRY--PFGPYS-----QQ-------------VQ-----------LDLIYAYYKNADLPLAQA 62 (225)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC--TTSTTH-----HH-------------HH-----------HHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCChHH-----HH-------------HH-----------HHHHHHHHhcCCHHHHHH
Confidence 667899999999999988752 221100 00 11 445567888999999999
Q ss_pred HHHHHHHCCCC-CCH-HHHHHHHHHHHh------------------cCChhHHHHHHHHHHHCCCCCCccc-HH------
Q 002846 374 IYEKMCLDEVP-MNE-ASLTAVGRMAMS------------------MGDGDMAFDMVKRMKSLGINPRLRS-YG------ 426 (874)
Q Consensus 374 lf~~M~~~Gv~-Pd~-~tyn~LI~~~~~------------------~G~~d~A~~l~~~M~~~Gi~Pd~~t-Yn------ 426 (874)
.|++.....-. +.. ..+-.+-.++.. .|+.++|...|+++.+. .|+..- +.
T Consensus 63 ~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~ 140 (225)
T 2yhc_A 63 AIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLV 140 (225)
T ss_dssp HHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHH
T ss_pred HHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHH
Confidence 99998875321 221 133333333332 57899999999998865 455432 21
Q ss_pred -----------HHHHHHHhCCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 427 -----------PALSVFCNNGDVDKACSVEEHMLEHGVYPEE----PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 427 -----------~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~----~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
.+-..|.+.|+.++|...|+.+.+.- |+. ..+..+..++.+.|+.++|...++.+...
T Consensus 141 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 141 FLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 23345778899999999999988753 542 45777888899999999999999988876
No 98
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=96.87 E-value=0.019 Score=50.87 Aligned_cols=114 Identities=15% Similarity=0.101 Sum_probs=66.1
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhC
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~ 435 (874)
..+-..+...|++++|.+.|++..... +.+...+..+...+...|++++|...+++..... ..+...|..+-..|...
T Consensus 16 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 93 (131)
T 2vyi_A 16 KTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSL 93 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHh
Confidence 334455566677777777777665542 2345666666667777777777777776665542 12344555555666666
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 002846 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472 (874)
Q Consensus 436 G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~ 472 (874)
|+.++|...|+...+.. ..+...+..+...+.+.|+
T Consensus 94 ~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 94 NKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 77777777666665542 1134445555555554444
No 99
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.76 E-value=0.024 Score=59.74 Aligned_cols=163 Identities=6% Similarity=-0.067 Sum_probs=115.6
Q ss_pred hhhcCChHHHHHHHHHHHHcCC-CCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHH
Q 002846 294 SNSSYRFDDLDSTFNEKENLGQ-FSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGF 372 (874)
Q Consensus 294 ~~~~g~~e~A~~lf~eM~~~Gi-~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~ 372 (874)
+...|++++|..++.+....-. .|+...+ +. .+ ..+...+...++.++|.
T Consensus 85 ~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~-------~~-----------~~-----------~~l~~~~~~~~~~~~Ai 135 (293)
T 3u3w_A 85 LCKQKRYKEIYNKVWNELKKEEYHPEFQQF-------LQ-----------WQ-----------YYVAAYVLKKVDYEYCI 135 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCCCHHHHHH-------HH-----------HH-----------HHHHHHHTTSSCHHHHH
T ss_pred HHHHhhHHHHHHHHHHHhccccCChHHHHH-------HH-----------HH-----------HHHHHHHHcccCHHHHH
Confidence 7888999999999998876421 1110000 00 01 33445566678999999
Q ss_pred HHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC-----CCCCC-cccHHHHHHHHHhCCChhHH
Q 002846 373 EIYEKMCLDEVP-MN----EASLTAVGRMAMSMGDGDMAFDMVKRMKSL-----GINPR-LRSYGPALSVFCNNGDVDKA 441 (874)
Q Consensus 373 ~lf~~M~~~Gv~-Pd----~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~-----Gi~Pd-~~tYn~LI~a~~k~G~~~~A 441 (874)
+.|++....... ++ ..+|+.|-..|...|++++|...|++..+. +..+. ..+|..+-..|.+.|+.++|
T Consensus 136 ~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A 215 (293)
T 3u3w_A 136 LELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEES 215 (293)
T ss_dssp HHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHH
Confidence 999998874222 23 347999999999999999999999988741 22222 23777888899999999999
Q ss_pred HHHHHHHHH----cCCCCC-HHHHHHHHHHHHhcCC-chHHHHHHHHHHh
Q 002846 442 CSVEEHMLE----HGVYPE-EPELEALLRVSVEAGK-GDRVYYLLHKLRT 485 (874)
Q Consensus 442 ~~l~~eM~~----~Gv~Pd-~~ty~~LI~~~~~~G~-~d~A~~ll~~M~~ 485 (874)
...+++..+ .+-.+. ...|..+-..+.+.|+ .++|...+++...
T Consensus 216 ~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 216 LYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999987654 233333 5677888888888995 5999988887654
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=96.75 E-value=0.0096 Score=57.76 Aligned_cols=126 Identities=8% Similarity=0.089 Sum_probs=78.1
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHH
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRM-AMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFC 433 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~-~~~~G~~d~A~~l~~~M~~~Gi~Pd-~~tYn~LI~a~~ 433 (874)
..+-..+.+.|++++|...|+...... |+...+..+... +...+...+|...+++..+. .|+ ...+..+-..+.
T Consensus 44 ~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~ 119 (176)
T 2r5s_A 44 LAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQAAESPELKRLEQELAA--NPDNFELACELAVQYN 119 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 455566777888888888887765432 343333222111 11222333466777766654 343 556666777777
Q ss_pred hCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 002846 434 NNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (874)
Q Consensus 434 k~G~~~~A~~l~~eM~~~Gv~P-d~~ty~~LI~~~~~~G~~d~A~~ll~~M~~ 485 (874)
..|+.++|...|+.+.+..-.+ +...+..|...+...|+.++|...|++...
T Consensus 120 ~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 120 QVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 8888888888888877654221 245677777778888888888877776543
No 101
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=96.73 E-value=0.014 Score=51.90 Aligned_cols=104 Identities=16% Similarity=0.171 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcC--CCCC----HHHHH
Q 002846 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG--VYPE----EPELE 461 (874)
Q Consensus 388 ~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~G--v~Pd----~~ty~ 461 (874)
..|..+...+...|++++|...|++..... ..+...|..+-..|...|++++|...++...... ..++ ...|.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345566666677777777777777666542 2244555666666667777777777777665532 1122 55666
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhcCCCCChhH
Q 002846 462 ALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPST 494 (874)
Q Consensus 462 ~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~T 494 (874)
.+-..+...|++++|...|.+.... .+++..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~ 114 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDV 114 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHH
Confidence 7777777788888888888777765 445443
No 102
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=96.72 E-value=0.011 Score=57.07 Aligned_cols=122 Identities=11% Similarity=0.074 Sum_probs=94.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHH-HHhCCCh--
Q 002846 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV-FCNNGDV-- 438 (874)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a-~~k~G~~-- 438 (874)
+...|++++|.+.|+...... +.+...|..+...|...|++++|...|++..+.. ..+...|..+-.. |...|+.
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 345678889999998877653 3467899999999999999999999999987653 1244556656666 6688998
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 439 DKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 439 ~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
++|...|+...+.. .-+...+..+-..|...|++++|...|.+....
T Consensus 98 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 98 AQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 99999999998764 224677888888999999999999999999886
No 103
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=96.72 E-value=0.026 Score=55.69 Aligned_cols=120 Identities=7% Similarity=-0.091 Sum_probs=96.4
Q ss_pred hhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHH
Q 002846 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (874)
Q Consensus 294 ~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~ 373 (874)
+...|++++|...|.+. +.|+...| ..+-..|.+.|++++|.+
T Consensus 16 ~~~~~~~~~A~~~~~~a----~~~~~~~~---------------------------------~~lg~~~~~~g~~~~A~~ 58 (213)
T 1hh8_A 16 AADKKDWKGALDAFSAV----QDPHSRIC---------------------------------FNIGCMYTILKNMTEAEK 58 (213)
T ss_dssp HHHTTCHHHHHHHHHTS----SSCCHHHH---------------------------------HHHHHHHHHTTCHHHHHH
T ss_pred HHHhCCHHHHHHHHHHH----cCCChHHH---------------------------------HHHHHHHHHcCCHHHHHH
Confidence 66788899998888755 33433333 677788899999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc----------------ccHHHHHHHHHhCCC
Q 002846 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL----------------RSYGPALSVFCNNGD 437 (874)
Q Consensus 374 lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~----------------~tYn~LI~a~~k~G~ 437 (874)
.|++..... +.+...|..+-.+|...|++++|...|++..+..- .+. ..|..+-..|.+.|+
T Consensus 59 ~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 136 (213)
T 1hh8_A 59 AFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR-GNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE 136 (213)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT-TCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhC-ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-CccHHHHHHhccccCccchHHHHHHHHHHHHccC
Confidence 999988754 44678999999999999999999999999887521 111 567778888999999
Q ss_pred hhHHHHHHHHHHHcC
Q 002846 438 VDKACSVEEHMLEHG 452 (874)
Q Consensus 438 ~~~A~~l~~eM~~~G 452 (874)
.++|.+.|+...+..
T Consensus 137 ~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 137 WKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999988754
No 104
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.71 E-value=0.0058 Score=64.84 Aligned_cols=165 Identities=6% Similarity=-0.104 Sum_probs=116.0
Q ss_pred hhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHH
Q 002846 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (874)
Q Consensus 294 ~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~ 373 (874)
|...|++++|...|.+....... .+....+ ..+| +.+-..|.+.|++++|..
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~-------~~~~~~~----------a~~~-----------~~lg~~~~~~g~~~~A~~ 98 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKK-------AGNEDEA----------GNTY-----------VEAYKCFKSGGNSVNAVD 98 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHH-------TTCHHHH----------HHHH-----------HHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHH-------hCCHHHH----------HHHH-----------HHHHHHHHHCCCHHHHHH
Confidence 77789999999888866543100 0000000 1122 666677888999999999
Q ss_pred HHHHHHHC----CCCC-CHHHHHHHHHHHHhc-CChhHHHHHHHHHHHCC----CCCC-cccHHHHHHHHHhCCChhHHH
Q 002846 374 IYEKMCLD----EVPM-NEASLTAVGRMAMSM-GDGDMAFDMVKRMKSLG----INPR-LRSYGPALSVFCNNGDVDKAC 442 (874)
Q Consensus 374 lf~~M~~~----Gv~P-d~~tyn~LI~~~~~~-G~~d~A~~l~~~M~~~G----i~Pd-~~tYn~LI~a~~k~G~~~~A~ 442 (874)
.|++...- |-.. -..+|+.+-..|... |++++|...|++..+.. -.+. ..+|+.+-..|.+.|++++|.
T Consensus 99 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 178 (292)
T 1qqe_A 99 SLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEAS 178 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 99876542 2111 135788899999996 99999999999876531 1001 346778888999999999999
Q ss_pred HHHHHHHHcCCCCCH------HHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 443 SVEEHMLEHGVYPEE------PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 443 ~l~~eM~~~Gv~Pd~------~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
..|+...+....... ..|..+..++...|+.++|...|++....
T Consensus 179 ~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 228 (292)
T 1qqe_A 179 DIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (292)
T ss_dssp HHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999875432221 15677777888999999999999987754
No 105
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=96.67 E-value=0.0094 Score=51.59 Aligned_cols=96 Identities=9% Similarity=0.013 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC---CHHHHHHHH
Q 002846 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP---EEPELEALL 464 (874)
Q Consensus 388 ~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~P---d~~ty~~LI 464 (874)
..|..+...+...|++++|...|++..+.. ..+...|..+-..|...|++++|...|+...+.. | +...|..+-
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~l~ 83 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI--EDEYNKDVWAAKA 83 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccchHHHHHHHH
Confidence 344555566666666777776666665542 1234455556666666777777777777666542 3 356666677
Q ss_pred HHHHhc-CCchHHHHHHHHHHhc
Q 002846 465 RVSVEA-GKGDRVYYLLHKLRTS 486 (874)
Q Consensus 465 ~~~~~~-G~~d~A~~ll~~M~~~ 486 (874)
..+... |+.++|.+.|.+....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 777777 7777777777777665
No 106
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=96.66 E-value=0.025 Score=60.37 Aligned_cols=128 Identities=13% Similarity=0.058 Sum_probs=91.8
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-CcccH
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCL----DEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINP-RLRSY 425 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~----~Gv~P-d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~----Gi~P-d~~tY 425 (874)
+.+-..|.+.|++++|.+.|++-.. .|-.. -..+|+.+-..|.. |++++|...|++.... |-.+ ...+|
T Consensus 80 ~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~ 158 (307)
T 2ifu_A 80 EQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELI 158 (307)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 5555667778888888888876543 22111 13577888888888 9999999999876543 1111 13567
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHhcCCchHHHHHHHHHH
Q 002846 426 GPALSVFCNNGDVDKACSVEEHMLEH----GVYPEE-PELEALLRVSVEAGKGDRVYYLLHKLR 484 (874)
Q Consensus 426 n~LI~a~~k~G~~~~A~~l~~eM~~~----Gv~Pd~-~ty~~LI~~~~~~G~~d~A~~ll~~M~ 484 (874)
+.+-..|.+.|++++|...|++.... +..+.. ..+..+...+...|+.++|...|++..
T Consensus 159 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 159 GKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 77888899999999999999988753 222222 255666667777899999999999987
No 107
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=96.65 E-value=0.11 Score=52.27 Aligned_cols=86 Identities=12% Similarity=0.026 Sum_probs=66.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH-HHH-----------------HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc--
Q 002846 363 AKKYAFQRGFEIYEKMCLDEVPMNE-ASL-----------------TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-- 422 (874)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~Gv~Pd~-~ty-----------------n~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~-- 422 (874)
...|+.++|...|+++.... |+. .++ -.+...|.+.|++++|...|+++.+. .|+.
T Consensus 107 ~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~ 182 (225)
T 2yhc_A 107 RDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQA 182 (225)
T ss_dssp -CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHH
T ss_pred cCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCc
Confidence 34678899999999988753 331 122 23456788999999999999998875 3553
Q ss_pred --ccHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 002846 423 --RSYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (874)
Q Consensus 423 --~tYn~LI~a~~k~G~~~~A~~l~~eM~~~G 452 (874)
..+..+..+|.+.|+.++|.+.++.+...+
T Consensus 183 ~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 183 TRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 456778889999999999999999988764
No 108
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=96.53 E-value=0.059 Score=53.82 Aligned_cols=176 Identities=11% Similarity=0.048 Sum_probs=112.0
Q ss_pred hhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHH
Q 002846 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (874)
Q Consensus 294 ~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~ 373 (874)
+...|++++|...|.+..... |+.... ... ..+....... ....+.+-..|.+.|++++|..
T Consensus 14 ~~~~g~~~~A~~~~~~al~~~--p~~~~~--------~~~-~~~~~~~~~~-------~~~~~~lg~~~~~~g~~~~A~~ 75 (208)
T 3urz_A 14 AIEAGQNGQAVSYFRQTIALN--IDRTEM--------YYW-TNVDKNSEIS-------SKLATELALAYKKNRNYDKAYL 75 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHHH--------HHH-HHSCTTSHHH-------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CCChHH--------HHH-hhhcchhhhh-------HHHHHHHHHHHHHCCCHHHHHH
Confidence 667899999999999887652 221110 000 0000000000 0000125567788999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhCCC--hhHHHHHHHHHHH
Q 002846 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGD--VDKACSVEEHMLE 450 (874)
Q Consensus 374 lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd-~~tYn~LI~a~~k~G~--~~~A~~l~~eM~~ 450 (874)
.|++..... +-+...|..+-..+...|++++|...|++..+. .|+ ...|..+-..|...|+ .+.+...+....
T Consensus 76 ~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~- 151 (208)
T 3urz_A 76 FYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS- 151 (208)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-
Confidence 999988764 336889999999999999999999999998875 354 5566666666655543 344555555543
Q ss_pred cCCCCCHHHHH--HHHHHHHhcCCchHHHHHHHHHHhcCCCCChhHHH
Q 002846 451 HGVYPEEPELE--ALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTAD 496 (874)
Q Consensus 451 ~Gv~Pd~~ty~--~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~T~~ 496 (874)
.|+...|. .+-.++...|++++|...|++..+. .|+.....
T Consensus 152 ---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~ 194 (208)
T 3urz_A 152 ---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQK 194 (208)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHH
T ss_pred ---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHH
Confidence 35554432 2333445678999999999999887 66654333
No 109
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=96.46 E-value=0.019 Score=51.40 Aligned_cols=98 Identities=8% Similarity=-0.044 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002846 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (874)
Q Consensus 387 ~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~ 466 (874)
...|..+...+...|++++|...|++..... ..+...|..+-..|...|+.++|...++...+.. ..+...|..+-..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 3444444445555555555555555444321 1123344444444445555555555555544422 1134444445555
Q ss_pred HHhcCCchHHHHHHHHHHhc
Q 002846 467 SVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 467 ~~~~G~~d~A~~ll~~M~~~ 486 (874)
+.+.|++++|...|.+....
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh
Confidence 55555555555555554443
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=96.44 E-value=0.019 Score=60.76 Aligned_cols=120 Identities=7% Similarity=0.017 Sum_probs=47.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHH-HHHHhCCChhHH
Q 002846 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL-SVFCNNGDVDKA 441 (874)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI-~a~~k~G~~~~A 441 (874)
...|++++|..+|++..... +-+...+..|...+...|++++|..++++.... .|+........ ..+...++.++|
T Consensus 128 ~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~~~~~~~~a 204 (287)
T 3qou_A 128 MQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELLXQAADTPE 204 (287)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHHHHHTSCHH
T ss_pred HhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHHhhcccCcc
Confidence 34444444444444444321 113334444444444444444444444443222 22222111111 112333444444
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 442 CSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 442 ~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
...++...... .-+...+..|-..|...|+.++|...|.++...
T Consensus 205 ~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 205 IQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 44444443322 112334444444444444444444444444443
No 111
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=96.44 E-value=0.065 Score=55.04 Aligned_cols=84 Identities=12% Similarity=0.021 Sum_probs=61.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHH-----------------HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc----
Q 002846 365 KYAFQRGFEIYEKMCLDEVPMN-EASL-----------------TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL---- 422 (874)
Q Consensus 365 ~g~~~~A~~lf~~M~~~Gv~Pd-~~ty-----------------n~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~---- 422 (874)
.|+.++|...|++..... |+ .... -.+...|.+.|++++|...|++..+. .|+.
T Consensus 110 ~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~ 185 (261)
T 3qky_A 110 QTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDA--YPDTPWAD 185 (261)
T ss_dssp CHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHH
T ss_pred chhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCchHH
Confidence 778888888888877643 22 2222 45677889999999999999998875 3542
Q ss_pred ccHHHHHHHHHhC----------CChhHHHHHHHHHHHcC
Q 002846 423 RSYGPALSVFCNN----------GDVDKACSVEEHMLEHG 452 (874)
Q Consensus 423 ~tYn~LI~a~~k~----------G~~~~A~~l~~eM~~~G 452 (874)
..+..+-.+|... |++++|...|+.+.+..
T Consensus 186 ~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 186 DALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 3455566677755 88899999999988743
No 112
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=96.43 E-value=0.032 Score=48.06 Aligned_cols=95 Identities=9% Similarity=0.026 Sum_probs=79.9
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CcccHHHHHHHHH
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP--RLRSYGPALSVFC 433 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~P--d~~tYn~LI~a~~ 433 (874)
..+-..+.+.|++++|...|++..... +.+..+|..+...+...|++++|...|++..+..- . +...|..+-..|.
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE-DEYNKDVWAAKADALR 87 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC-CTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-ccchHHHHHHHHHHHH
Confidence 566677888999999999999988754 34678899999999999999999999999887631 2 4667777888889
Q ss_pred hC-CChhHHHHHHHHHHHcC
Q 002846 434 NN-GDVDKACSVEEHMLEHG 452 (874)
Q Consensus 434 k~-G~~~~A~~l~~eM~~~G 452 (874)
+. |+.++|.+.+.......
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 88 YIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp TCSSCSHHHHHHHHHHGGGC
T ss_pred HHhCCHHHHHHHHHHHhhcc
Confidence 99 99999999999988754
No 113
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=96.42 E-value=0.061 Score=46.63 Aligned_cols=98 Identities=13% Similarity=0.036 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002846 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (874)
Q Consensus 387 ~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~ 466 (874)
...+..+...+...|++++|...|++..... +.+...+..+-..|...|+.++|...++...+.. ..+...+..+-..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3456666677777777777777777766542 1245556666666777777777777777776643 1245667777777
Q ss_pred HHhcCCchHHHHHHHHHHhc
Q 002846 467 SVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 467 ~~~~G~~d~A~~ll~~M~~~ 486 (874)
+...|+.++|...|.+....
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 77788888888888777665
No 114
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=96.41 E-value=0.046 Score=48.85 Aligned_cols=109 Identities=12% Similarity=0.127 Sum_probs=85.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCC
Q 002846 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (874)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~ 437 (874)
+-..+.+.|++++|.+.|++..... +.+..++..+...+...|++++|...+++..+.. ..+...|..+-..|.+.|+
T Consensus 22 ~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~ 99 (133)
T 2lni_A 22 KGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALEAMKD 99 (133)
T ss_dssp HHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHHhh
Confidence 4466778999999999999988753 3368889999999999999999999999988753 2346777778889999999
Q ss_pred hhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhc
Q 002846 438 VDKACSVEEHMLEHGVYPE-EPELEALLRVSVEA 470 (874)
Q Consensus 438 ~~~A~~l~~eM~~~Gv~Pd-~~ty~~LI~~~~~~ 470 (874)
+++|.+.|+...+.. |+ ...+..+-..+...
T Consensus 100 ~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 100 YTKAMDVYQKALDLD--SSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHHHHHHHHHHHC--GGGTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHh
Confidence 999999999987643 43 34444444444443
No 115
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.41 E-value=0.0082 Score=58.56 Aligned_cols=131 Identities=14% Similarity=-0.019 Sum_probs=96.0
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC--Cccc
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCL----DEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINP--RLRS 424 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~----~Gv~P-d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~----Gi~P--d~~t 424 (874)
..+-..+...|++++|.+.|++... .|..| ...++..+-..+...|++++|...+++.... +-.| ....
T Consensus 30 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 109 (203)
T 3gw4_A 30 FMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASAN 109 (203)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHH
Confidence 5666778889999999999988776 22222 3467888889999999999999999876543 2112 1345
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 425 YGPALSVFCNNGDVDKACSVEEHMLEH----GVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 425 Yn~LI~a~~k~G~~~~A~~l~~eM~~~----Gv~P-d~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
+..+-..+...|++++|...+++.... +-.. -..++..|-..+...|++++|...+.+....
T Consensus 110 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 110 AYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 666777888899999999999887642 2111 1233567777888999999999999876653
No 116
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=96.33 E-value=0.065 Score=47.30 Aligned_cols=99 Identities=10% Similarity=0.010 Sum_probs=83.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 002846 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465 (874)
Q Consensus 386 d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~ 465 (874)
+...+..+...+...|++++|...|++..... ..+...|..+-..+...|+.++|...++...... ..+...|..+-.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 45677888899999999999999999987752 2356778888888999999999999999988753 234778888888
Q ss_pred HHHhcCCchHHHHHHHHHHhc
Q 002846 466 VSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 466 ~~~~~G~~d~A~~ll~~M~~~ 486 (874)
.+...|+.++|...|.+....
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhc
Confidence 999999999999999998876
No 117
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.30 E-value=0.066 Score=56.36 Aligned_cols=163 Identities=6% Similarity=-0.063 Sum_probs=114.6
Q ss_pred hhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHH
Q 002846 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (874)
Q Consensus 294 ~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~ 373 (874)
+...|++++|.+.+.+.....-..+. .. ..+. .+ ..+...+...|+.++|.+
T Consensus 85 ~~~~~~y~~A~~~~~~~l~~~~~~~~-~~-----~~~~-----------~~-----------~~~~~~~~~~~~~~~A~~ 136 (293)
T 2qfc_A 85 LCKQKRYKEIYNKVWNELKKEEYHPE-FQ-----QFLQ-----------WQ-----------YYVAAYVLKKVDYEYCIL 136 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCCCHH-HH-----HHHH-----------HH-----------HHHHHHHHTSSCHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHhccccCChh-HH-----HHHH-----------HH-----------HHHHHHHhcCCCHHHHHH
Confidence 78899999999999887765311000 00 0000 00 234445677889999999
Q ss_pred HHHHHHHCC---CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCC-----cccHHHHHHHHHhCCChhHHH
Q 002846 374 IYEKMCLDE---VPMN--EASLTAVGRMAMSMGDGDMAFDMVKRMKSL-GINPR-----LRSYGPALSVFCNNGDVDKAC 442 (874)
Q Consensus 374 lf~~M~~~G---v~Pd--~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~-Gi~Pd-----~~tYn~LI~a~~k~G~~~~A~ 442 (874)
.|++..... ..+. ..+|+.+-..|...|++++|...|++..+. ...|+ ..+|+.+-..|.+.|+.++|.
T Consensus 137 ~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al 216 (293)
T 2qfc_A 137 ELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESL 216 (293)
T ss_dssp HHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHH
Confidence 999877532 1222 458999999999999999999999987622 11222 257888888999999999999
Q ss_pred HHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCchHH-HHHHHHHH
Q 002846 443 SVEEHMLEH----GVYPE-EPELEALLRVSVEAGKGDRV-YYLLHKLR 484 (874)
Q Consensus 443 ~l~~eM~~~----Gv~Pd-~~ty~~LI~~~~~~G~~d~A-~~ll~~M~ 484 (874)
..++...+. +.... ..+|..+-..|.+.|+.++| ...+++..
T Consensus 217 ~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 217 YQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 999887543 22222 56788888889999999999 77676644
No 118
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=96.30 E-value=0.02 Score=50.96 Aligned_cols=108 Identities=14% Similarity=0.162 Sum_probs=86.1
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCC----cccHHHHH
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI--NPR----LRSYGPAL 429 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi--~Pd----~~tYn~LI 429 (874)
..+-..+...|++++|...|++..... +.+...+..+...+...|++++|...+++.....- .++ ...|..+-
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la 86 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 455667888999999999999988754 44678899999999999999999999998876531 122 56777788
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002846 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (874)
Q Consensus 430 ~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~ 466 (874)
..|...|++++|.+.|+...+.. |+...+..+-..
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~ 121 (131)
T 1elr_A 87 NSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHH
Confidence 88999999999999999998854 666555555443
No 119
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=96.25 E-value=0.061 Score=62.49 Aligned_cols=118 Identities=12% Similarity=0.026 Sum_probs=85.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CcccHHHHHHHHHhCCChhHHHH
Q 002846 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACS 443 (874)
Q Consensus 365 ~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~P-d~~tYn~LI~a~~k~G~~~~A~~ 443 (874)
.|++++|.+.|++..+.. +-+...|..+-..+...|++++|.+.+++..+. .| +...|..+-..|...|+.++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 367889999998877643 235788999999999999999999999998765 34 46677888888999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 444 VEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 444 l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
.|++..+.. .-+...|..|-..|.+.|+.++|...|++..+.
T Consensus 79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 120 (568)
T 2vsy_A 79 LLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL 120 (568)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999988754 235678888999999999999999999998876
No 120
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=96.23 E-value=0.037 Score=66.32 Aligned_cols=126 Identities=10% Similarity=-0.027 Sum_probs=104.9
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CcccHHHHHHHHHh
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCN 434 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~P-d~~tYn~LI~a~~k 434 (874)
..+-..+.+.|++++|.+.|++..+.. +-+...|..+-.+|...|++++|...|++..+. .| +...|..+-..|.+
T Consensus 437 ~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~ 513 (681)
T 2pzi_A 437 LMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT--FPGELAPKLALAATAEL 513 (681)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHH
Confidence 455567888999999999999988753 336788999999999999999999999998875 35 45677778888999
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 435 NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 435 ~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
.|++++ .+.|+...+.. .-+...|..|-.++.+.|+.++|...|++..+.
T Consensus 514 ~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 563 (681)
T 2pzi_A 514 AGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLDEVPPT 563 (681)
T ss_dssp HTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT
T ss_pred cCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc
Confidence 999999 99999988754 225677888889999999999999999887765
No 121
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.15 E-value=0.077 Score=63.63 Aligned_cols=244 Identities=7% Similarity=-0.034 Sum_probs=155.1
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHH-HHHhhcccCchhhhhcCCCC-chhhhHhhh
Q 002846 208 MGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTL-DTFEVSTMNSTELGDSRDMD-NNGQLDYGS 285 (874)
Q Consensus 208 ~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~-~vf~v~~~~s~em~~~~gi~-d~vtyn~LI 285 (874)
..+..+|+++... +.-+...|-....-+- ..|..++|. .+|. +-+ . -++ +...|-..+
T Consensus 326 ~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~----------~~~~~~~a~r~il~------rAi-~--~~P~s~~Lwl~~a 385 (679)
T 4e6h_A 326 ARMTYVYMQAAQH-VCFAPEIWFNMANYQG----------EKNTDSTVITKYLK------LGQ-Q--CIPNSAVLAFSLS 385 (679)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHH----------HHSCCTTHHHHHHH------HHH-H--HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHH----------hcCcHHHHHHHHHH------HHH-H--hCCCCHHHHHHHH
Confidence 3456678777753 2334555555555554 446667786 8885 222 2 233 333355555
Q ss_pred cCcccChhhhhcCChHHHHHHHHHHHHcCC---------CCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccc
Q 002846 286 SPMIDKLESNSSYRFDDLDSTFNEKENLGQ---------FSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADE 356 (874)
Q Consensus 286 ~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi---------~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n 356 (874)
.. .-+.|+++.|..+|+.+..... .|+.- ..+..... .....| -
T Consensus 386 ~~------ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~----~~~~~~~~------~~~~vW-----------i 438 (679)
T 4e6h_A 386 EQ------YELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNE----SAINQLKS------KLTYVY-----------C 438 (679)
T ss_dssp HH------HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCH----HHHHHHHH------HHHHHH-----------H
T ss_pred HH------HHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcch----hhhhhhcc------chHHHH-----------H
Confidence 55 6678999999999998876410 02100 00000000 001123 5
Q ss_pred hHHHHHHhcCCHHHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 002846 357 IRLSEDAKKYAFQRGFEIYEKMCLD-E-VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN 434 (874)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~-G-v~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k 434 (874)
..+....+.|.++.|..+|....+. + ..+......+.|.-.+ .++.+.|..+|+...+. +.-+...+...+.....
T Consensus 439 ~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~ 516 (679)
T 4e6h_A 439 VYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKY-FATDGEYINKYLDFLIY 516 (679)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHh
Confidence 5566666788999999999998876 3 2333444444443222 35699999999988876 33344455677887788
Q ss_pred CCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 002846 435 NGDVDKACSVEEHMLEHGVYP--EEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWF 502 (874)
Q Consensus 435 ~G~~~~A~~l~~eM~~~Gv~P--d~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~T~~~I~~~~ 502 (874)
.|+.+.|..+|+......-.+ ....|...++.-.+.|+.+.+..+..+|... .|..+...++..-+
T Consensus 517 ~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 517 VNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence 999999999999988765322 4568888998889999999999999999998 66655555543333
No 122
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=96.15 E-value=0.057 Score=46.81 Aligned_cols=95 Identities=13% Similarity=0.078 Sum_probs=79.4
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhC
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~ 435 (874)
..+...+...|++++|...|+...... +.+...+..+...+...|++++|...+++..+.. ..+...|..+-..|...
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHH
Confidence 455667788999999999999988753 3467889999999999999999999999988763 23466778888899999
Q ss_pred CChhHHHHHHHHHHHcC
Q 002846 436 GDVDKACSVEEHMLEHG 452 (874)
Q Consensus 436 G~~~~A~~l~~eM~~~G 452 (874)
|+.++|...++...+..
T Consensus 86 ~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 86 NRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp TCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHcC
Confidence 99999999999988743
No 123
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.13 E-value=0.053 Score=57.11 Aligned_cols=128 Identities=9% Similarity=0.021 Sum_probs=97.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-CCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCc----ccHHH
Q 002846 358 RLSEDAKKYAFQRGFEIYEKMCLDE-VPMNE----ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN-PRL----RSYGP 427 (874)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~G-v~Pd~----~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~-Pd~----~tYn~ 427 (874)
.+..+...|++++|.+++++..... ..|+. ..|..+...+...|++++|...|++....... ++. .+|+.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4677889999999999999988743 22332 23445667777788999999999999875332 232 26888
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHc-----CCCCCH-HHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 002846 428 ALSVFCNNGDVDKACSVEEHMLEH-----GVYPEE-PELEALLRVSVEAGKGDRVYYLLHKLRT 485 (874)
Q Consensus 428 LI~a~~k~G~~~~A~~l~~eM~~~-----Gv~Pd~-~ty~~LI~~~~~~G~~d~A~~ll~~M~~ 485 (874)
+-..|...|+.++|...|+...+. +..+.. .+|..+-..|.+.|++++|...+++...
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~ 224 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 888999999999999999998741 222222 3778888889999999999999987654
No 124
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=96.13 E-value=0.024 Score=53.76 Aligned_cols=130 Identities=10% Similarity=0.038 Sum_probs=98.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CcccHHHHHHHHHhCCChhHH
Q 002846 364 KKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKA 441 (874)
Q Consensus 364 k~g~~~~A~~lf~~M~~~Gv~P-d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~P-d~~tYn~LI~a~~k~G~~~~A 441 (874)
..|++++|++.|...... .| +...+-.|-..|.+.|++++|.+.|++..+. .| +...|..+-..|.+.|++++|
T Consensus 9 ~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchHHH
Confidence 457888999988876543 23 2345667889999999999999999998876 34 467788888899999999999
Q ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCchHHHHH-HHHHHhcCCCC-ChhHHHHHHHH
Q 002846 442 CSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYL-LHKLRTSVRKV-SPSTADVIAKW 501 (874)
Q Consensus 442 ~~l~~eM~~~Gv~P-d~~ty~~LI~~~~~~G~~d~A~~l-l~~M~~~~~~~-sp~T~~~I~~~ 501 (874)
...|+...+.. | +...|..|-..|.+.|+.++|... +++..+. .| .|..+.....+
T Consensus 85 ~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~l 143 (150)
T 4ga2_A 85 VECYRRSVELN--PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQL 143 (150)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHH
Confidence 99999988753 6 467888888899999999877665 5666654 33 33355544333
No 125
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=96.12 E-value=0.053 Score=49.80 Aligned_cols=88 Identities=16% Similarity=0.134 Sum_probs=46.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhH
Q 002846 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK 440 (874)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~ 440 (874)
.|.+.|++++|++.|++..+.. +-+..+|..+-.+|.+.|++++|...|++..+.. ..+...|..+-..|...|++++
T Consensus 22 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~ 99 (126)
T 4gco_A 22 EYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVAMREWSK 99 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHCCCHHH
Confidence 3445566666666665554432 2345555555556666666666666665554431 1123444445555555555555
Q ss_pred HHHHHHHHHH
Q 002846 441 ACSVEEHMLE 450 (874)
Q Consensus 441 A~~l~~eM~~ 450 (874)
|.+.|+...+
T Consensus 100 A~~~~~~al~ 109 (126)
T 4gco_A 100 AQRAYEDALQ 109 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 126
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=96.11 E-value=0.11 Score=46.44 Aligned_cols=90 Identities=17% Similarity=0.051 Sum_probs=57.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCcc----cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC----HHHHHHHH
Q 002846 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLR----SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE----EPELEALL 464 (874)
Q Consensus 393 LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~----tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd----~~ty~~LI 464 (874)
+...+...|++++|...|+...+.. |+.. .+..+-..|.+.|++++|...|+...... |+ ...+..+-
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la 83 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHH
Confidence 3445566777777777777666542 3332 44445556667777777777777766543 33 45556666
Q ss_pred HHHHhcCCchHHHHHHHHHHhc
Q 002846 465 RVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 465 ~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
..+...|+.++|...|+++...
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 6777778888888888777765
No 127
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=96.06 E-value=0.055 Score=58.74 Aligned_cols=128 Identities=11% Similarity=-0.001 Sum_probs=102.0
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN--------------EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR 421 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd--------------~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd 421 (874)
..+=..|.+.|++++|...|++.....-... ..+|..+-.+|.+.|++++|...+++..+.. ..+
T Consensus 151 ~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~ 229 (336)
T 1p5q_A 151 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SNN 229 (336)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCc
Confidence 4455677889999999999998887542211 5899999999999999999999999988763 235
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCchHH-HHHHHHHHhc
Q 002846 422 LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRV-YYLLHKLRTS 486 (874)
Q Consensus 422 ~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~P-d~~ty~~LI~~~~~~G~~d~A-~~ll~~M~~~ 486 (874)
...|..+-.+|...|++++|...|+...+.. | +...+..|-..+.+.|+.++| ..++..|...
T Consensus 230 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 230 EKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888889999999999999999988753 4 566778888888888888888 4566666543
No 128
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.06 E-value=0.12 Score=47.01 Aligned_cols=98 Identities=15% Similarity=0.065 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHH
Q 002846 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELE 461 (874)
Q Consensus 386 d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd----~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~ 461 (874)
+...+..+...+...|++++|..+|++..+. .|+ ...|..+-..|...|++++|...++...... ..+...|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 5667777777788888888888888877654 455 4666667777778888888888887776642 12466677
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 462 ALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 462 ~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
.+-..+...|+.++|...|.+....
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 7777788888888888888887765
No 129
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=96.05 E-value=0.084 Score=47.83 Aligned_cols=100 Identities=12% Similarity=-0.058 Sum_probs=79.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 002846 385 MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464 (874)
Q Consensus 385 Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI 464 (874)
.+...|..+-..+...|++++|...|++..... ..+...|..+-..|...|++++|...++...... .-+...|..+-
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 467788888888999999999999998877653 2345677777788888999999999998887754 22567788888
Q ss_pred HHHHhcCCchHHHHHHHHHHhc
Q 002846 465 RVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 465 ~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
..+...|++++|...|.+....
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 8888999999999999887764
No 130
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=96.01 E-value=0.07 Score=51.09 Aligned_cols=90 Identities=12% Similarity=0.010 Sum_probs=55.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChh
Q 002846 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (874)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~ 439 (874)
..+.+.|++++|...|+...... +-+...|..+-.+|...|++++|...|++..+.. +-+...|..+=.+|.+.|+.+
T Consensus 44 ~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg~~~ 121 (151)
T 3gyz_A 44 YDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLRLKAPL 121 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHH
Confidence 44556677777777776666543 2345666666666777777777777776665542 112445555556666666777
Q ss_pred HHHHHHHHHHHc
Q 002846 440 KACSVEEHMLEH 451 (874)
Q Consensus 440 ~A~~l~~eM~~~ 451 (874)
+|...|+...+.
T Consensus 122 eA~~~~~~al~l 133 (151)
T 3gyz_A 122 KAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 776666666653
No 131
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=95.98 E-value=0.084 Score=50.53 Aligned_cols=101 Identities=4% Similarity=-0.085 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 002846 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALL 464 (874)
Q Consensus 387 ~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~P-d~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~P-d~~ty~~LI 464 (874)
...+..+-..+.+.|++++|...|++.... .| +...|..+=.+|...|++++|...|+...+.. | +...|..|-
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--P~~~~~~~~lg 111 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--KNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--CCCcHHHHHHH
Confidence 456777888899999999999999998876 34 46677777788899999999999999998754 4 467788888
Q ss_pred HHHHhcCCchHHHHHHHHHHhcCCCCChh
Q 002846 465 RVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (874)
Q Consensus 465 ~~~~~~G~~d~A~~ll~~M~~~~~~~sp~ 493 (874)
.+|.+.|+.++|...|++.... .+.+.
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 8999999999999999999887 55554
No 132
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=95.95 E-value=0.27 Score=51.50 Aligned_cols=94 Identities=5% Similarity=-0.077 Sum_probs=68.5
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHH----CCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC-ccc
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCL----DEVPM--NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINPR-LRS 424 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~----~Gv~P--d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~----Gi~Pd-~~t 424 (874)
+.+-..|...|++++|.+.|++... .+-.+ ...+|+.+...|...|++++|...+++..+. +.... ..+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 5566777888999999999987762 11111 1268899999999999999999999976543 11111 456
Q ss_pred HHHHHHHHHhCCChhHH-HHHHHHHH
Q 002846 425 YGPALSVFCNNGDVDKA-CSVEEHML 449 (874)
Q Consensus 425 Yn~LI~a~~k~G~~~~A-~~l~~eM~ 449 (874)
|..+-..|.+.|+.++| ...++...
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 67777888899999999 77666543
No 133
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=95.94 E-value=0.035 Score=52.56 Aligned_cols=111 Identities=12% Similarity=0.054 Sum_probs=85.0
Q ss_pred hHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhC
Q 002846 357 IRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNN 435 (874)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd-~~tYn~LI~a~~k~ 435 (874)
.+=..|.+.|++++|.+.|++..+.. +-+..+|..+-.+|...|++++|...|++..+. .|+ ...|..+-..|.+.
T Consensus 36 ~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~ 112 (150)
T 4ga2_A 36 YFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRRSVEL--NPTQKDLVLKIAELLCKN 112 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 34567889999999999999988753 336889999999999999999999999998875 454 56777788889999
Q ss_pred CChhHHHHH-HHHHHHcCCCC-CHHHHHHHHHHHHhcCC
Q 002846 436 GDVDKACSV-EEHMLEHGVYP-EEPELEALLRVSVEAGK 472 (874)
Q Consensus 436 G~~~~A~~l-~~eM~~~Gv~P-d~~ty~~LI~~~~~~G~ 472 (874)
|+.++|.+. ++...+. .| +...|...-..+...|+
T Consensus 113 ~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 113 DVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCCC
T ss_pred CChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCc
Confidence 999877665 4666653 35 45556655555555553
No 134
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=95.93 E-value=0.023 Score=54.62 Aligned_cols=123 Identities=7% Similarity=0.004 Sum_probs=90.5
Q ss_pred hhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHH
Q 002846 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (874)
Q Consensus 294 ~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~ 373 (874)
+...|++++|...|.+..... |+. ...| ..+-..|...|++++|..
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~--p~~---------------------~~~~-----------~~lg~~~~~~~~~~~A~~ 65 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN--PQN---------------------SEQW-----------ALLGEYYLWQNDYSNSLL 65 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC--CSC---------------------HHHH-----------HHHHHHHHHTTCHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhC--CCc---------------------HHHH-----------HHHHHHHHHcCCHHHHHH
Confidence 566778888888887766542 221 1222 566677889999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHH-HHhcCCh--hHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHH
Q 002846 374 IYEKMCLDEVPMNEASLTAVGRM-AMSMGDG--DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (874)
Q Consensus 374 lf~~M~~~Gv~Pd~~tyn~LI~~-~~~~G~~--d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~ 450 (874)
.|++..... +.+...+..+... +...|++ ++|...+++..... .-+...+..+-..|...|+.++|...|+...+
T Consensus 66 ~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 66 AYRQALQLR-GENAELYAALATVLYYQASQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 999988753 2367788888888 7799998 99999999988763 12356677788889999999999999999887
Q ss_pred cC
Q 002846 451 HG 452 (874)
Q Consensus 451 ~G 452 (874)
..
T Consensus 144 ~~ 145 (177)
T 2e2e_A 144 LN 145 (177)
T ss_dssp TC
T ss_pred hC
Confidence 53
No 135
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=95.78 E-value=0.03 Score=67.20 Aligned_cols=172 Identities=8% Similarity=-0.067 Sum_probs=123.7
Q ss_pred CCCCHHHHHHHHhhcccCchhhh--------hcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCe
Q 002846 248 KSGSGMRTLDTFEVSTMNSTELG--------DSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG 319 (874)
Q Consensus 248 k~G~~~~A~~vf~v~~~~s~em~--------~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~ 319 (874)
..|+.++|...+. +.. .. .-.+...|..+-.. +...|++++|...|++..+.. |+.
T Consensus 403 ~~~~~~~A~~~~~-------~al~~~~~~~~~~-~p~~~~~~~~~a~~------~~~~g~~~~A~~~~~~al~~~--p~~ 466 (681)
T 2pzi_A 403 VLSQPVQTLDSLR-------AARHGALDADGVD-FSESVELPLMEVRA------LLDLGDVAKATRKLDDLAERV--GWR 466 (681)
T ss_dssp TTCCHHHHHHHHH-------HHHTC-------C-CTTCSHHHHHHHHH------HHHHTCHHHHHHHHHHHHHHH--CCC
T ss_pred cccCHHHHHHHHH-------Hhhhhcccccccc-cccchhHHHHHHHH------HHhcCCHHHHHHHHHHHhccC--cch
Confidence 5788999999985 333 11 11144556666666 889999999999999887752 222
Q ss_pred eeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 002846 320 HMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS 399 (874)
Q Consensus 320 ~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~ 399 (874)
. ..| ..+=..|.+.|++++|.+.|++..+.. +-+...|..+-.+|.+
T Consensus 467 ~---------------------~a~-----------~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~ 513 (681)
T 2pzi_A 467 W---------------------RLV-----------WYRAVAELLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAEL 513 (681)
T ss_dssp H---------------------HHH-----------HHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHH
T ss_pred H---------------------HHH-----------HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 1 112 445566788999999999999988753 2356788999999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCC
Q 002846 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGK 472 (874)
Q Consensus 400 ~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd-~~ty~~LI~~~~~~G~ 472 (874)
.|++++ .+.|++..+.. .-+...|..+-..|.+.|+.++|.+.|+...+. .|+ ...|..+..++...|.
T Consensus 514 ~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 514 AGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred cCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 999999 99999987752 124567788888999999999999999987663 476 4556666666655454
No 136
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=95.72 E-value=0.13 Score=47.04 Aligned_cols=96 Identities=7% Similarity=-0.076 Sum_probs=80.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 002846 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468 (874)
Q Consensus 389 tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~ 468 (874)
.+..+=..|.+.|++++|.+.|++..+.. +-+...|..+-.+|.+.|++++|...|+...+.. ..+...|..+-.++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 45556678899999999999999987652 2356778888889999999999999999988753 235778888999999
Q ss_pred hcCCchHHHHHHHHHHhc
Q 002846 469 EAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 469 ~~G~~d~A~~ll~~M~~~ 486 (874)
..|++++|...|++..+.
T Consensus 93 ~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 999999999999998876
No 137
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=95.71 E-value=0.068 Score=64.13 Aligned_cols=231 Identities=8% Similarity=-0.079 Sum_probs=154.6
Q ss_pred HHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCCccc
Q 002846 169 QYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAI-RLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPA 247 (874)
Q Consensus 169 A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G~~~~Al-~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~ 247 (874)
+..+|++....- +-+...|-....-+-+.|+.++|. .+|++.... ++.+...|-..+...-
T Consensus 328 v~~~Ye~aL~~~-------p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee---------- 389 (679)
T 4e6h_A 328 MTYVYMQAAQHV-------CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYE---------- 389 (679)
T ss_dssp HHHHHHHHHHHT-------TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHc-------CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH----------
Confidence 456677764421 113367777777778889999997 999999853 3445555555566555
Q ss_pred CCCCHHHHHHHHhhcccCchhhhhc---------CCCC------------chhhhHhhhcCcccChhhhhcCChHHHHHH
Q 002846 248 KSGSGMRTLDTFEVSTMNSTELGDS---------RDMD------------NNGQLDYGSSPMIDKLESNSSYRFDDLDST 306 (874)
Q Consensus 248 k~G~~~~A~~vf~v~~~~s~em~~~---------~gi~------------d~vtyn~LI~~~~~~~~~~~~g~~e~A~~l 306 (874)
+.|++++|..+|+ .+... .+.+ ....|-..+.. ..+.|.++.|..+
T Consensus 390 ~~~~~e~aR~iye-------k~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~------erR~~~l~~AR~v 456 (679)
T 4e6h_A 390 LNTKIPEIETTIL-------SCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT------MKRIQGLAASRKI 456 (679)
T ss_dssp HTTCHHHHHHHHH-------HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH------HHHHHCHHHHHHH
T ss_pred HhCCHHHHHHHHH-------HHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH------HHHcCCHHHHHHH
Confidence 6789999999995 32221 0111 11246666666 6677889999999
Q ss_pred HHHHHHc-C-CCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 002846 307 FNEKENL-G-QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVP 384 (874)
Q Consensus 307 f~eM~~~-G-i~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~ 384 (874)
|...... + +.+.++.. .+.|... ..++.+.|..+|+...+. ++
T Consensus 457 f~~A~~~~~~~~~~lyi~---------------------------------~A~lE~~-~~~d~e~Ar~ife~~Lk~-~p 501 (679)
T 4e6h_A 457 FGKCRRLKKLVTPDIYLE---------------------------------NAYIEYH-ISKDTKTACKVLELGLKY-FA 501 (679)
T ss_dssp HHHHHHTGGGSCTHHHHH---------------------------------HHHHHHT-TTSCCHHHHHHHHHHHHH-HT
T ss_pred HHHHHHhcCCCChHHHHH---------------------------------HHHHHHH-hCCCHHHHHHHHHHHHHH-CC
Confidence 9988765 2 11111111 2222221 134589999999988876 34
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 002846 385 MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP--RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEA 462 (874)
Q Consensus 385 Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~P--d~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~ 462 (874)
-+...+...++.....|+.+.|..+|+........+ ....|...+..-.+.|+.+.+..|.+.|.+.- |+......
T Consensus 502 ~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~--P~~~~~~~ 579 (679)
T 4e6h_A 502 TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF--PEVNKLEE 579 (679)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS--TTCCHHHH
T ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCcHHHH
Confidence 466777899999999999999999999877653211 24577888888888999999999999998854 66555555
Q ss_pred HHHHH
Q 002846 463 LLRVS 467 (874)
Q Consensus 463 LI~~~ 467 (874)
+++-|
T Consensus 580 f~~ry 584 (679)
T 4e6h_A 580 FTNKY 584 (679)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 55444
No 138
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=95.70 E-value=0.2 Score=46.49 Aligned_cols=98 Identities=10% Similarity=-0.025 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002846 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (874)
Q Consensus 387 ~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~ 466 (874)
...|..+...+...|++++|...|++..... ..+...|..+-..+...|++++|...++...... ..+...|..+-..
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3467778888999999999999999987752 2356778888888999999999999999988754 2357788888889
Q ss_pred HHhcCCchHHHHHHHHHHhc
Q 002846 467 SVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 467 ~~~~G~~d~A~~ll~~M~~~ 486 (874)
+...|+.++|...|.+....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKV 110 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHh
Confidence 99999999999999999876
No 139
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=95.69 E-value=0.083 Score=55.79 Aligned_cols=122 Identities=7% Similarity=-0.068 Sum_probs=84.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 002846 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEA 462 (874)
Q Consensus 384 ~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~P-d~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~ 462 (874)
+.+...+..+...+...|++++|..+|++.... .| +...+..+-..|...|+.++|..+++..... .|+......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~ 189 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGL 189 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHH
Confidence 345566777888889999999999999988765 34 3566777888889999999999999987664 366554433
Q ss_pred HHH-HHHhcCCchHHHHHHHHHHhcCCCCCh-hH-HHHHHHHHhcchHHHhh
Q 002846 463 LLR-VSVEAGKGDRVYYLLHKLRTSVRKVSP-ST-ADVIAKWFNSKEAARLG 511 (874)
Q Consensus 463 LI~-~~~~~G~~d~A~~ll~~M~~~~~~~sp-~T-~~~I~~~~~s~~~~~a~ 511 (874)
... .+...+..++|...|++.... .|.. .. ++.-..+...+...+|.
T Consensus 190 ~~~~~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~ 239 (287)
T 3qou_A 190 VAQIELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEAL 239 (287)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHH
Confidence 333 256778888899988888776 4432 23 33344555555554443
No 140
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=95.63 E-value=0.14 Score=45.97 Aligned_cols=89 Identities=10% Similarity=0.023 Sum_probs=46.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChh
Q 002846 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (874)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~ 439 (874)
..+.+.|++++|.+.|++..... +.+...|..+-.++.+.|++++|...+++..+.. +-+...|..+-..|...|+.+
T Consensus 12 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~ 89 (126)
T 3upv_A 12 KEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYA 89 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhCHH
Confidence 34455566666666666555432 2245555666666666666666666665555431 112334444445555555555
Q ss_pred HHHHHHHHHHH
Q 002846 440 KACSVEEHMLE 450 (874)
Q Consensus 440 ~A~~l~~eM~~ 450 (874)
+|...|+...+
T Consensus 90 ~A~~~~~~al~ 100 (126)
T 3upv_A 90 SALETLDAART 100 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 141
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=95.63 E-value=0.095 Score=49.71 Aligned_cols=99 Identities=13% Similarity=0.045 Sum_probs=75.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 002846 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465 (874)
Q Consensus 386 d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~ 465 (874)
+...|..+-..+...|++++|...|++..+.. .-+...|..+-..|.+.|++++|...|+...+.. .-+...|..+-.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34567777788888888888888888877652 1245667777778888888888888888887754 224677788888
Q ss_pred HHHhcCCchHHHHHHHHHHhc
Q 002846 466 VSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 466 ~~~~~G~~d~A~~ll~~M~~~ 486 (874)
.|...|++++|...|.+....
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 888889999999988887765
No 142
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=95.58 E-value=0.032 Score=53.97 Aligned_cols=152 Identities=10% Similarity=0.060 Sum_probs=102.5
Q ss_pred CCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccH
Q 002846 248 KSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQL 327 (874)
Q Consensus 248 k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~ 327 (874)
..|++++|...|. +.... .-.+...|..+-.. +...|++++|...|+..... .|+. .+
T Consensus 18 ~~g~~~~A~~~~~-------~al~~-~P~~~~a~~~la~~------~~~~g~~~~A~~~~~~a~~~--~p~~-~~----- 75 (176)
T 2r5s_A 18 QQGEHAQALNVIQ-------TLSDE-LQSRGDVKLAKADC------LLETKQFELAQELLATIPLE--YQDN-SY----- 75 (176)
T ss_dssp HTTCHHHHHHHHH-------TSCHH-HHTSHHHHHHHHHH------HHHTTCHHHHHHHHTTCCGG--GCCH-HH-----
T ss_pred HcCCHHHHHHHHH-------HHHHH-CCCcHHHHHHHHHH------HHHCCCHHHHHHHHHHhhhc--cCCh-HH-----
Confidence 5688999999985 22211 11144556666666 88889999998888765433 1211 11
Q ss_pred HHHHHhhhcCCCCcccccccccccCCccchHHH--HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 002846 328 LDGRSNLERGPDDQSRKKDWSIDNQDADEIRLS--EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDM 405 (874)
Q Consensus 328 ~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~--~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~ 405 (874)
..+.. .+...+...+|...|++..... +-+...+..+-..+...|++++
T Consensus 76 ----------------------------~~~~~~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~ 126 (176)
T 2r5s_A 76 ----------------------------KSLIAKLELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEE 126 (176)
T ss_dssp ----------------------------HHHHHHHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred ----------------------------HHHHHHHHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHH
Confidence 11111 1112222234678888777643 2357889999999999999999
Q ss_pred HHHHHHHHHHCCCCC-CcccHHHHHHHHHhCCChhHHHHHHHHHHH
Q 002846 406 AFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (874)
Q Consensus 406 A~~l~~~M~~~Gi~P-d~~tYn~LI~a~~k~G~~~~A~~l~~eM~~ 450 (874)
|...|+++.+..-.+ +...+..+...|...|+.++|...|+....
T Consensus 127 A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 127 ALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 999999988764222 245788889999999999999999987653
No 143
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=95.53 E-value=0.13 Score=46.09 Aligned_cols=98 Identities=11% Similarity=0.009 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 002846 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (874)
Q Consensus 387 ~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~ 466 (874)
...|..+-..+.+.|++++|...|++..+.. +.+...|..+-.+|.+.|++++|...|+...+.. .-+...|..+-.+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3456777788999999999999999987753 2356778888889999999999999999988754 2246788888889
Q ss_pred HHhcCCchHHHHHHHHHHhc
Q 002846 467 SVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 467 ~~~~G~~d~A~~ll~~M~~~ 486 (874)
+...|++++|...|.+....
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 99999999999999998775
No 144
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=95.52 E-value=0.033 Score=51.11 Aligned_cols=130 Identities=14% Similarity=-0.015 Sum_probs=94.5
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-CcccH
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEV-PMN----EASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINP-RLRSY 425 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv-~Pd----~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~----Gi~P-d~~tY 425 (874)
..+-..+...|++++|.+.|++.....- .++ ..++..+...+...|++++|...+++.... +-.+ ....+
T Consensus 13 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 92 (164)
T 3ro3_A 13 GNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSC 92 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 4555677789999999999988765311 112 247888999999999999999999886643 1111 14456
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 002846 426 GPALSVFCNNGDVDKACSVEEHMLEH----GVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (874)
Q Consensus 426 n~LI~a~~k~G~~~~A~~l~~eM~~~----Gv~P-d~~ty~~LI~~~~~~G~~d~A~~ll~~M~~ 485 (874)
..+-..+...|+.++|.+.+++..+. +-.+ ....+..|-..+...|+.++|...+.+...
T Consensus 93 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 93 YSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 66777888999999999999887643 2111 134567777788899999999999987654
No 145
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=95.51 E-value=0.092 Score=48.11 Aligned_cols=100 Identities=13% Similarity=0.147 Sum_probs=48.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhCCChhHHHHHHHHHHHcC--CCCC----HHHHHHHH
Q 002846 392 AVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHG--VYPE----EPELEALL 464 (874)
Q Consensus 392 ~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd-~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~G--v~Pd----~~ty~~LI 464 (874)
-|=..+.+.|++++|+..|++..+. .|+ ...|+.+=..|.+.|++++|.+.++...+.. ..++ ...|..|=
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 3344445555555555555554433 222 3344444445555555555555555443321 1111 12344444
Q ss_pred HHHHhcCCchHHHHHHHHHHhcCCCCChhHH
Q 002846 465 RVSVEAGKGDRVYYLLHKLRTSVRKVSPSTA 495 (874)
Q Consensus 465 ~~~~~~G~~d~A~~ll~~M~~~~~~~sp~T~ 495 (874)
.++...|++++|.+.|++-... .+.|++.
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 5556667777777777666554 4555443
No 146
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=95.51 E-value=0.1 Score=48.48 Aligned_cols=92 Identities=14% Similarity=-0.049 Sum_probs=43.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 002846 392 AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAG 471 (874)
Q Consensus 392 ~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G 471 (874)
.+...+...|++++|...|++..... +.+...|..+-..|.+.|++++|...|+...... .-+...|..+-.+|...|
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g 100 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLG 100 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 34444445555555555555544331 1123333434444445555555555555554432 112334444445555555
Q ss_pred CchHHHHHHHHHHh
Q 002846 472 KGDRVYYLLHKLRT 485 (874)
Q Consensus 472 ~~d~A~~ll~~M~~ 485 (874)
++++|...|+....
T Consensus 101 ~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 101 DLDGAESGFYSARA 114 (142)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555544
No 147
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.48 E-value=0.16 Score=46.11 Aligned_cols=93 Identities=10% Similarity=-0.031 Sum_probs=77.7
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN----EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV 431 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd----~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a 431 (874)
..+-..+.+.|++++|.++|++.... .|+ ...|..+...|...|++++|...+++..+.. ..+...|..+-..
T Consensus 32 ~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 108 (148)
T 2dba_A 32 RKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRSQA 108 (148)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHHHH
Confidence 45556778899999999999998875 466 6888999999999999999999999987752 2245677778888
Q ss_pred HHhCCChhHHHHHHHHHHHc
Q 002846 432 FCNNGDVDKACSVEEHMLEH 451 (874)
Q Consensus 432 ~~k~G~~~~A~~l~~eM~~~ 451 (874)
|...|+.++|...|+...+.
T Consensus 109 ~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 109 LEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHc
Confidence 99999999999999998774
No 148
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=95.48 E-value=0.11 Score=46.99 Aligned_cols=93 Identities=10% Similarity=0.008 Sum_probs=78.2
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhC
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~ 435 (874)
..+-..+.+.|++++|...|+...... +.+...|..+..++...|++++|...+++..+.. .-+...|..+-..|...
T Consensus 13 ~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 90 (137)
T 3q49_B 13 KEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLEM 90 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHH
Confidence 455567889999999999999887754 3467899999999999999999999999988763 23466778888889999
Q ss_pred CChhHHHHHHHHHHH
Q 002846 436 GDVDKACSVEEHMLE 450 (874)
Q Consensus 436 G~~~~A~~l~~eM~~ 450 (874)
|++++|...|....+
T Consensus 91 ~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 91 ESYDEAIANLQRAYS 105 (137)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 999999999998765
No 149
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=95.42 E-value=0.83 Score=45.47 Aligned_cols=86 Identities=15% Similarity=0.002 Sum_probs=52.9
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhC-C--
Q 002846 365 KYAFQRGFEIYEKMCLDEVP-MNEASLTAVGRMAMS----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN-G-- 436 (874)
Q Consensus 365 ~g~~~~A~~lf~~M~~~Gv~-Pd~~tyn~LI~~~~~----~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~-G-- 436 (874)
.++.++|++.|++..+.|.. -+...+..|-..|.. .++.++|+..|++-.+.+ .+...+..|=..|... |
T Consensus 102 ~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~ 179 (212)
T 3rjv_A 102 ATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--RTGYAEYWAGMMFQQGEKGF 179 (212)
T ss_dssp SCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--CTTHHHHHHHHHHHHCBTTT
T ss_pred ccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCC
Confidence 45777888888777766521 015667777777777 677888888887776651 2222344444444432 2
Q ss_pred ---ChhHHHHHHHHHHHcC
Q 002846 437 ---DVDKACSVEEHMLEHG 452 (874)
Q Consensus 437 ---~~~~A~~l~~eM~~~G 452 (874)
+.++|...|+...+.|
T Consensus 180 ~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 180 IEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp BCCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHcC
Confidence 6777777776666554
No 150
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=95.41 E-value=0.12 Score=47.95 Aligned_cols=90 Identities=14% Similarity=0.073 Sum_probs=75.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChh
Q 002846 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (874)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~ 439 (874)
..+.+.|++++|..+|+...... +.+...|..+-.+|...|++++|...|++..... +-+...|..+-.+|...|+.+
T Consensus 26 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~ 103 (142)
T 2xcb_A 26 FNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLGDLD 103 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHH
Confidence 45678899999999999988754 3477889999999999999999999999988763 234566777888899999999
Q ss_pred HHHHHHHHHHHc
Q 002846 440 KACSVEEHMLEH 451 (874)
Q Consensus 440 ~A~~l~~eM~~~ 451 (874)
+|...|+...+.
T Consensus 104 ~A~~~~~~al~~ 115 (142)
T 2xcb_A 104 GAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988764
No 151
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=95.41 E-value=0.12 Score=48.82 Aligned_cols=99 Identities=11% Similarity=-0.087 Sum_probs=74.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 002846 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465 (874)
Q Consensus 386 d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~ 465 (874)
+...+..+-..+...|++++|...|+...... +.+...|..+-..|...|++++|...|+...... .-+...|..+-.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 34566677778888899999999998877652 2245566666677788899999999998887653 124567777778
Q ss_pred HHHhcCCchHHHHHHHHHHhc
Q 002846 466 VSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 466 ~~~~~G~~d~A~~ll~~M~~~ 486 (874)
+|...|+.++|...|++....
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 888899999999999887765
No 152
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=95.33 E-value=0.087 Score=56.16 Aligned_cols=127 Identities=12% Similarity=-0.065 Sum_probs=96.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc----ccHHHHHHHHH
Q 002846 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL----RSYGPALSVFC 433 (874)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~----~tYn~LI~a~~ 433 (874)
....+...|++++|.++|+.+...+ |+....-.+-..+.+.+++++|+..|+..... |+. ..+..+=.++.
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~---~d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW---PDKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC---SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc---CCcccHHHHHHHHHHHHH
Confidence 4567788999999999999988754 65556666667899999999999999744332 321 23444566788
Q ss_pred hCCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCC
Q 002846 434 NNGDVDKACSVEEHMLEHGVYPE--EPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVS 491 (874)
Q Consensus 434 k~G~~~~A~~l~~eM~~~Gv~Pd--~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~s 491 (874)
..|++++|...|++.......|. ......+-.++.+.|+.++|..+|+++... .|.
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~ 240 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPE 240 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCC
T ss_pred HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc
Confidence 99999999999999885443354 234455556678899999999999999987 555
No 153
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=95.31 E-value=0.28 Score=49.00 Aligned_cols=122 Identities=10% Similarity=0.011 Sum_probs=97.3
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----ChhHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG----DGDMAFDMVKRMKSLGINPRLRSYGPALSV 431 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G----~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a 431 (874)
..|=..|...++.++|++.|++..+.| +...+..|-..|.. + +.++|...|++..+.| +...+..|=..
T Consensus 22 ~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~ 94 (212)
T 3rjv_A 22 YYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLARV 94 (212)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 344456667899999999999998887 67778888888887 6 8999999999988775 34455555555
Q ss_pred HHh----CCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHh----cCCchHHHHHHHHHHhc
Q 002846 432 FCN----NGDVDKACSVEEHMLEHGVYPE---EPELEALLRVSVE----AGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 432 ~~k----~G~~~~A~~l~~eM~~~Gv~Pd---~~ty~~LI~~~~~----~G~~d~A~~ll~~M~~~ 486 (874)
|.. .++.++|.+.|+...+.| |. ...+..|=..|.. .++.++|..+|++-.+.
T Consensus 95 y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 95 LVNRQAGATDVAHAITLLQDAARDS--ESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp HTCGGGSSCCHHHHHHHHHHHTSST--TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred HHcCCCCccCHHHHHHHHHHHHHcC--CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 655 789999999999988876 43 6777777777777 77899999999998776
No 154
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=95.28 E-value=0.14 Score=48.19 Aligned_cols=94 Identities=13% Similarity=0.102 Sum_probs=77.9
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhC
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~ 435 (874)
..+-..+.+.|++++|...|+...... +.+...|..+-.+|...|++++|...|++..... +-+...|..+-.+|...
T Consensus 25 ~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~ 102 (148)
T 2vgx_A 25 YSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLLQX 102 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHc
Confidence 344567788999999999999988754 3478889999999999999999999999988753 22456777788889999
Q ss_pred CChhHHHHHHHHHHHc
Q 002846 436 GDVDKACSVEEHMLEH 451 (874)
Q Consensus 436 G~~~~A~~l~~eM~~~ 451 (874)
|+.++|...|+...+.
T Consensus 103 g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 103 GELAEAESGLFLAQEL 118 (148)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999988764
No 155
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=95.23 E-value=1.7 Score=46.70 Aligned_cols=220 Identities=10% Similarity=0.028 Sum_probs=145.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcccCCCcccCCC--CHHHHHHHHhhcccCchhhhhcCCCCchhhh
Q 002846 205 GDVMGAIRLYDKAQREGIKLGQY-HYNVLLYLCSSAAVGVVKPAKSG--SGMRTLDTFEVSTMNSTELGDSRDMDNNGQL 281 (874)
Q Consensus 205 G~~~~Al~lf~~M~~~Gi~pd~~-tyn~LL~a~~~~~~~~~~~~k~G--~~~~A~~vf~v~~~~s~em~~~~gi~d~vty 281 (874)
..-++|+.+++.+... .|+.+ .||.-=.++. ..| .+++++..++ .+... .-.+...|
T Consensus 47 e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~----------~l~~~~~~eeL~~~~-------~~L~~-nPk~y~aW 106 (306)
T 3dra_A 47 EYSERALHITELGINE--LASHYTIWIYRFNILK----------NLPNRNLYDELDWCE-------EIALD-NEKNYQIW 106 (306)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH----------TCTTSCHHHHHHHHH-------HHHHH-CTTCCHHH
T ss_pred CCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHH----------HcccccHHHHHHHHH-------HHHHH-CcccHHHH
Confidence 3446899999999864 35544 4555444444 445 8999999986 33322 22233445
Q ss_pred HhhhcCcccChhh----hhc---CChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCc
Q 002846 282 DYGSSPMIDKLES----NSS---YRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDA 354 (874)
Q Consensus 282 n~LI~~~~~~~~~----~~~---g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~ 354 (874)
+.--.. + ... +++++++.+++.+.... . -.|+.|.+.
T Consensus 107 ~~R~~i------L~~~~~~l~~~~~~~~EL~~~~~~l~~~----p----------------------kny~aW~~R---- 150 (306)
T 3dra_A 107 NYRQLI------IGQIMELNNNDFDPYREFDILEAMLSSD----P----------------------KNHHVWSYR---- 150 (306)
T ss_dssp HHHHHH------HHHHHHHTTTCCCTHHHHHHHHHHHHHC----T----------------------TCHHHHHHH----
T ss_pred HHHHHH------HHHHHHhccccCCHHHHHHHHHHHHHhC----C----------------------CCHHHHHHH----
Confidence 543333 2 233 67788888888887752 1 122222222
Q ss_pred cchHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------hhHHHHHHHHHHHCCCCCCcccHH
Q 002846 355 DEIRLSEDAKKYAFQ--RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD------GDMAFDMVKRMKSLGINPRLRSYG 426 (874)
Q Consensus 355 ~n~lI~~~~k~g~~~--~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~------~d~A~~l~~~M~~~Gi~Pd~~tYn 426 (874)
.-++ .+.|..+ ++++.++.|.+.. .-|-..|+----.+...|. ++++++.++.+..... -|...|+
T Consensus 151 -~~vl---~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p-~n~SaW~ 224 (306)
T 3dra_A 151 -KWLV---DTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCP-QNPSTWN 224 (306)
T ss_dssp -HHHH---HHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCS-SCHHHHH
T ss_pred -HHHH---HHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCC-CCccHHH
Confidence 2222 3345555 8999999999865 3477888877777777776 8899999998887633 4667777
Q ss_pred HHHHHHHhCCChhH-HHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 427 PALSVFCNNGDVDK-ACSVEEHMLEHG--VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 427 ~LI~a~~k~G~~~~-A~~l~~eM~~~G--v~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
-+-..+.+.|+..+ +.++...+.+.+ -..+...+..|.+.|++.|+.++|.++++.+.+.
T Consensus 225 y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~ 287 (306)
T 3dra_A 225 YLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSK 287 (306)
T ss_dssp HHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 77777777777444 455666554432 1357788999999999999999999999999874
No 156
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=95.11 E-value=0.074 Score=51.54 Aligned_cols=122 Identities=12% Similarity=-0.028 Sum_probs=88.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-CcccHHHHHHHHHhCCC
Q 002846 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINP-RLRSYGPALSVFCNNGD 437 (874)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~----Gi~P-d~~tYn~LI~a~~k~G~ 437 (874)
...|++++|.++++.+.. .......++..+-..+...|++++|...+++.... |..| ...++..+-..|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 457899999996655543 22235678899999999999999999999887652 2222 24566777778889999
Q ss_pred hhHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 002846 438 VDKACSVEEHMLEH----GVYP--EEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (874)
Q Consensus 438 ~~~A~~l~~eM~~~----Gv~P--d~~ty~~LI~~~~~~G~~d~A~~ll~~M~~ 485 (874)
+++|...+++.... +-.| ....+..+-..+...|++++|...+.+...
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLV 135 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999886653 2111 234567777788899999999999988764
No 157
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=95.11 E-value=0.17 Score=49.51 Aligned_cols=118 Identities=8% Similarity=-0.085 Sum_probs=82.2
Q ss_pred hHHHHHHhcCCHHHHHHHHHHHHHCCC-CC---C-----------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 002846 357 IRLSEDAKKYAFQRGFEIYEKMCLDEV-PM---N-----------EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR 421 (874)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~Gv-~P---d-----------~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd 421 (874)
.+-..+.+.|++++|.++|++.....- .| . ..+|..+..+|...|++++|...++...... ..+
T Consensus 43 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~ 121 (198)
T 2fbn_A 43 EEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNN 121 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccc
Confidence 334567788999999999998886421 12 1 2678888888889999999999998887652 234
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCchHHH
Q 002846 422 LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVY 477 (874)
Q Consensus 422 ~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~P-d~~ty~~LI~~~~~~G~~d~A~ 477 (874)
...|..+-.+|...|++++|...|+...+.. | +...+..|-..+...++.+++.
T Consensus 122 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 122 VKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777778888889999988888877643 4 4455555555555555444444
No 158
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=95.05 E-value=0.7 Score=52.09 Aligned_cols=120 Identities=13% Similarity=0.054 Sum_probs=82.4
Q ss_pred chHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CChhHHHHHHHHHHHCCCCCCcccHHHH
Q 002846 356 EIRLSEDAKKY---AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM----GDGDMAFDMVKRMKSLGINPRLRSYGPA 428 (874)
Q Consensus 356 n~lI~~~~k~g---~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~----G~~d~A~~l~~~M~~~Gi~Pd~~tYn~L 428 (874)
..|-..|.+.| +.++|++.|+.-.+.| .++...+..|-..|... ++.++|+..|++.. .|. ...+..|
T Consensus 180 ~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~---~~a~~~L 254 (452)
T 3e4b_A 180 VELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PGY---PASWVSL 254 (452)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGS---THHHHHH
T ss_pred HHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCC---HHHHHHH
Confidence 45556666778 8889999998888877 34455545566666544 68889999998876 332 2333333
Q ss_pred HHH-H--HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----CchHHHHHHHHHH
Q 002846 429 LSV-F--CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAG-----KGDRVYYLLHKLR 484 (874)
Q Consensus 429 I~a-~--~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G-----~~d~A~~ll~~M~ 484 (874)
=.. | ...++.++|.+.|+...+.| +...+..|=..|. .| +.++|...|.+-.
T Consensus 255 g~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 255 AQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 333 2 35789999999999888877 5566666655555 45 7888888888766
No 159
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=95.04 E-value=0.024 Score=50.88 Aligned_cols=86 Identities=10% Similarity=-0.021 Sum_probs=53.3
Q ss_pred cCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHH
Q 002846 365 KYAFQRGFEIYEKMCLDEV--PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKAC 442 (874)
Q Consensus 365 ~g~~~~A~~lf~~M~~~Gv--~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~ 442 (874)
.|++++|...|++....+. +-+..+|..|-..|...|++++|...|++..+..- -+...|..+-.+|.+.|+.++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHHH
Confidence 4666777777777766531 22345667777777777777777777777765521 23455555666677777777777
Q ss_pred HHHHHHHHc
Q 002846 443 SVEEHMLEH 451 (874)
Q Consensus 443 ~l~~eM~~~ 451 (874)
..|+.....
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777766553
No 160
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=95.03 E-value=0.34 Score=45.73 Aligned_cols=94 Identities=11% Similarity=0.079 Sum_probs=79.1
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhC
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~ 435 (874)
..+-..+.+.|++++|.+.|++..... +-+...|..+..+|...|++++|...|++..+.. .-+...|..+-..|...
T Consensus 15 ~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~ 92 (164)
T 3sz7_A 15 KSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLARFDM 92 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 444567788999999999999988754 3378899999999999999999999999988763 22467788888899999
Q ss_pred CChhHHHHHHHHHHHc
Q 002846 436 GDVDKACSVEEHMLEH 451 (874)
Q Consensus 436 G~~~~A~~l~~eM~~~ 451 (874)
|++++|...|+...+.
T Consensus 93 g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 93 ADYKGAKEAYEKGIEA 108 (164)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHh
Confidence 9999999999988764
No 161
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.00 E-value=1.4 Score=48.26 Aligned_cols=121 Identities=7% Similarity=0.003 Sum_probs=81.2
Q ss_pred cCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CC--CC-CcccHHHHHHHHHh
Q 002846 365 KYAFQRGFEIYEKMCL----DEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSL--GI--NP-RLRSYGPALSVFCN 434 (874)
Q Consensus 365 ~g~~~~A~~lf~~M~~----~Gv~Pd-~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~--Gi--~P-d~~tYn~LI~a~~k 434 (874)
.|..+.|.+++..... .+..+. ..++..|...|...|++++|..++++.... +. .| ...+|..++..|..
T Consensus 108 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (434)
T 4b4t_Q 108 PDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHK 187 (434)
T ss_dssp CSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 4567777777765543 333333 456778888888999999999988876543 11 11 13467778888888
Q ss_pred CCChhHHHHHHHHHHHc--CCC-C-C--HHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 002846 435 NGDVDKACSVEEHMLEH--GVY-P-E--EPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (874)
Q Consensus 435 ~G~~~~A~~l~~eM~~~--Gv~-P-d--~~ty~~LI~~~~~~G~~d~A~~ll~~M~~ 485 (874)
.|++++|..+++..... .+. | . ...|..+...+...|++++|...|.+...
T Consensus 188 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 188 LRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999888776432 121 2 1 24455666666778889998888776643
No 162
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=94.93 E-value=0.31 Score=43.34 Aligned_cols=95 Identities=9% Similarity=-0.019 Sum_probs=74.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----cccHHHHHHH
Q 002846 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNE---ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----LRSYGPALSV 431 (874)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~---~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd----~~tYn~LI~a 431 (874)
-..+.+.|++++|.+.|+......- .+. ..+..+-.++...|++++|...|++..... |+ ...+..+-..
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHH
Confidence 3456789999999999999887531 122 477788889999999999999999988753 44 3446667778
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCHH
Q 002846 432 FCNNGDVDKACSVEEHMLEHGVYPEEP 458 (874)
Q Consensus 432 ~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ 458 (874)
|...|+.++|...|+.+.... |+..
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~--p~~~ 110 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQY--PGSD 110 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS--TTSH
T ss_pred HHHcCCHHHHHHHHHHHHHHC--CCCh
Confidence 889999999999999988754 5543
No 163
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=94.91 E-value=0.19 Score=45.98 Aligned_cols=100 Identities=12% Similarity=0.142 Sum_probs=76.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCC----cccHHHHHHHHH
Q 002846 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG--INPR----LRSYGPALSVFC 433 (874)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~G--i~Pd----~~tYn~LI~a~~ 433 (874)
..+.+.|++++|++.|++..+.. +-+..+|+.+-.+|...|++++|++.+++..+.. ..++ ..+|..+=..+.
T Consensus 16 ~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~ 94 (127)
T 4gcn_A 16 NAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQ 94 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH
Confidence 56778999999999999988753 3467889999999999999999999999876542 1111 124555556677
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 002846 434 NNGDVDKACSVEEHMLEHGVYPEEPELEA 462 (874)
Q Consensus 434 k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~ 462 (874)
..|++++|.+.|+..... .||..+...
T Consensus 95 ~~~~~~~A~~~~~kal~~--~~~~~~~~~ 121 (127)
T 4gcn_A 95 KQNDLSLAVQWFHRSLSE--FRDPELVKK 121 (127)
T ss_dssp HTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence 889999999999987763 467655443
No 164
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.75 E-value=0.3 Score=53.64 Aligned_cols=175 Identities=7% Similarity=-0.131 Sum_probs=114.1
Q ss_pred hhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHH
Q 002846 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (874)
Q Consensus 294 ~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~ 373 (874)
+.+.|++++|.+.|.+.....-.........+.........+ ..+ ..|...|.+.|++++|.+
T Consensus 14 l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~------~al-----------~~l~~~y~~~~~~~~a~~ 76 (434)
T 4b4t_Q 14 LVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQE------TSI-----------LELGQLYVTMGAKDKLRE 76 (434)
T ss_dssp HHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHH------HHH-----------HHHHHHHHHHTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHH------HHH-----------HHHHHHHHHCCCHHHHHH
Confidence 567899999999999988764322221111111000000000 001 567788999999999999
Q ss_pred HHHHHHHC-CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCC-cccHHHHHHHHHhCCChhHHHH
Q 002846 374 IYEKMCLD-EVPMNE----ASLTAVGRMAMSMGDGDMAFDMVKRMKS----LGINPR-LRSYGPALSVFCNNGDVDKACS 443 (874)
Q Consensus 374 lf~~M~~~-Gv~Pd~----~tyn~LI~~~~~~G~~d~A~~l~~~M~~----~Gi~Pd-~~tYn~LI~a~~k~G~~~~A~~ 443 (874)
++..+... +-.++. .+.+.+-..+...|+.+.|..++.+... .+..+. ..++..+-..|...|++++|..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 156 (434)
T 4b4t_Q 77 FIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLA 156 (434)
T ss_dssp HHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHH
Confidence 99877652 112222 1223333334457889999999887653 233232 4567778889999999999999
Q ss_pred HHHHHHHc--CC--CC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 002846 444 VEEHMLEH--GV--YP-EEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (874)
Q Consensus 444 l~~eM~~~--Gv--~P-d~~ty~~LI~~~~~~G~~d~A~~ll~~M~~ 485 (874)
++++.... +. .+ ....|..++..|...|++++|..++++...
T Consensus 157 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 157 LINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp HHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 99987643 21 12 245788889999999999999999988654
No 165
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=94.75 E-value=0.13 Score=55.69 Aligned_cols=143 Identities=10% Similarity=-0.018 Sum_probs=99.7
Q ss_pred hhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchH
Q 002846 279 GQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIR 358 (874)
Q Consensus 279 vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~l 358 (874)
..|..+=.. +.+.|++++|...|.+..... |+...+.. +++..+ .. -....| ..+
T Consensus 148 ~~~~~~g~~------~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~---~~~~~~-~~--~~~~~~-----------~nl 202 (336)
T 1p5q_A 148 TIVKERGTV------YFKEGKYKQALLQYKKIVSWL--EYESSFSN---EEAQKA-QA--LRLASH-----------LNL 202 (336)
T ss_dssp HHHHHHHHH------HHHHTCHHHHHHHHHHHHHHT--TTCCCCCS---HHHHHH-HH--HHHHHH-----------HHH
T ss_pred HHHHHHHHH------HHHCCCHHHHHHHHHHHHHHh--hccccCCh---HHHHHH-HH--HHHHHH-----------HHH
Confidence 345555555 888999999999999887753 33211100 000000 00 001122 566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CcccHHHHHHHHHhCCC
Q 002846 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGD 437 (874)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~P-d~~tYn~LI~a~~k~G~ 437 (874)
-..|.+.|++++|+..|++..... +-+...|..+-.+|...|++++|...|++..+. .| +...+..+-..+.+.|+
T Consensus 203 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~ 279 (336)
T 1p5q_A 203 AMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRR 279 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHH
Confidence 678889999999999999988754 347889999999999999999999999998875 34 35567777778888888
Q ss_pred hhHH-HHHHHHHH
Q 002846 438 VDKA-CSVEEHML 449 (874)
Q Consensus 438 ~~~A-~~l~~eM~ 449 (874)
.++| ..+|..|.
T Consensus 280 ~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 280 QLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888 44666554
No 166
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=94.65 E-value=0.42 Score=47.40 Aligned_cols=117 Identities=9% Similarity=0.011 Sum_probs=88.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHH----------------HHHHHHhcCChhHHHHHHHHHHHCCCCC-Cc
Q 002846 361 EDAKKYAFQRGFEIYEKMCLDEVPMN-EASLTA----------------VGRMAMSMGDGDMAFDMVKRMKSLGINP-RL 422 (874)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~Gv~Pd-~~tyn~----------------LI~~~~~~G~~d~A~~l~~~M~~~Gi~P-d~ 422 (874)
.+...|++++|...|++..... |+ ...|.. +-..|.+.|++++|...|++..+. .| +.
T Consensus 13 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~ 88 (208)
T 3urz_A 13 AAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--APNNV 88 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCH
Confidence 4567899999999999988753 43 345555 888999999999999999998876 34 46
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCC--chHHHHHHHHH
Q 002846 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGK--GDRVYYLLHKL 483 (874)
Q Consensus 423 ~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~P-d~~ty~~LI~~~~~~G~--~d~A~~ll~~M 483 (874)
..|..+-..|...|+.++|...|+...+.. | +...|..|-..|...|. .+.+...+...
T Consensus 89 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~ 150 (208)
T 3urz_A 89 DCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYLTAEQEKKKLETDYKKL 150 (208)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 677888888999999999999999998854 5 46677777777655553 33445555444
No 167
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=94.41 E-value=0.15 Score=46.24 Aligned_cols=88 Identities=15% Similarity=0.175 Sum_probs=60.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CcccHHHHHHHHHhCCCh
Q 002846 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDV 438 (874)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~P-d~~tYn~LI~a~~k~G~~ 438 (874)
..+.+.|++++|...|+...... +-+...|..+-.++...|++++|...|++..+. .| +...+..+-..|...|+.
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~~~g~~ 101 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEHNA 101 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence 45667778888888887777643 235667777777777788888888887776654 23 344555566667777777
Q ss_pred hHHHHHHHHHHH
Q 002846 439 DKACSVEEHMLE 450 (874)
Q Consensus 439 ~~A~~l~~eM~~ 450 (874)
++|...|+...+
T Consensus 102 ~~A~~~~~~al~ 113 (121)
T 1hxi_A 102 NAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 777777776654
No 168
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=94.33 E-value=0.12 Score=59.11 Aligned_cols=117 Identities=12% Similarity=0.035 Sum_probs=88.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhH
Q 002846 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK 440 (874)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~ 440 (874)
.+.+.|++++|.+.|++..+.. +-+..+|..+..+|.+.|++++|...+++..+.. .-+...|..+-.+|...|+.++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 4557899999999999887753 3358899999999999999999999999988763 2345677778888999999999
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHH--HHhcCCchHHHHHHH
Q 002846 441 ACSVEEHMLEHGVYPE-EPELEALLRV--SVEAGKGDRVYYLLH 481 (874)
Q Consensus 441 A~~l~~eM~~~Gv~Pd-~~ty~~LI~~--~~~~G~~d~A~~ll~ 481 (874)
|.+.|++..+.. |+ ...+..+-.+ +.+.|++++|..+++
T Consensus 93 A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999987753 32 2333334333 778899999999887
No 169
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=94.21 E-value=0.24 Score=44.85 Aligned_cols=93 Identities=13% Similarity=0.005 Sum_probs=76.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 002846 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVS 467 (874)
Q Consensus 390 yn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~P-d~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~P-d~~ty~~LI~~~ 467 (874)
+-.+...+.+.|++++|...|++..+. .| +...|..+=..+...|+.++|...|+...+.. | +...+..|-..+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSH 95 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 444567788999999999999998875 35 45666667778889999999999999988754 5 567788888899
Q ss_pred HhcCCchHHHHHHHHHHhc
Q 002846 468 VEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 468 ~~~G~~d~A~~ll~~M~~~ 486 (874)
...|+.++|...|++....
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999998765
No 170
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=93.91 E-value=1.5 Score=49.46 Aligned_cols=112 Identities=8% Similarity=-0.022 Sum_probs=79.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----ChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHh----
Q 002846 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG-----DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN---- 434 (874)
Q Consensus 364 k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G-----~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k---- 434 (874)
..++.++|++.|++-.+.| +...+..|-..|. .| ++++|...|++-. .| +...+..|=..|..
T Consensus 263 ~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~ 334 (452)
T 3e4b_A 263 ELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLG 334 (452)
T ss_dssp GGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTS
T ss_pred CCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCC
Confidence 4789999999999999888 6777888887777 55 9999999998766 33 33444444444444
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCchHHHHHHHHHHhc
Q 002846 435 NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE----AGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 435 ~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~----~G~~d~A~~ll~~M~~~ 486 (874)
..+.++|...|..-.+.|.. ..+..|-..|.. ..+.++|...|..-...
T Consensus 335 ~~d~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 387 (452)
T 3e4b_A 335 KVYPQKALDHLLTAARNGQN---SADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ 387 (452)
T ss_dssp SCCHHHHHHHHHHHHTTTCT---THHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHHHhhChH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence 23899999999998887742 233334334432 34778888888888776
No 171
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=93.73 E-value=0.12 Score=47.31 Aligned_cols=129 Identities=15% Similarity=0.034 Sum_probs=89.1
Q ss_pred hhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHH
Q 002846 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (874)
Q Consensus 294 ~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~ 373 (874)
+...|++++|...+.+.....-..+. ....+ ..+ ..+-..+...|++++|.+
T Consensus 19 ~~~~~~~~~A~~~~~~al~~~~~~~~------~~~~~-----------~~~-----------~~l~~~~~~~g~~~~A~~ 70 (164)
T 3ro3_A 19 HYLLGNFRDAVIAHEQRLLIAKEFGD------KAAER-----------IAY-----------SNLGNAYIFLGEFETASE 70 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTC------HHHHH-----------HHH-----------HHHHHHHHHTTCHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHhCC------chHHH-----------HHH-----------HHHHHHHHHcCCHHHHHH
Confidence 77889999999999887654100000 00000 112 556677888999999999
Q ss_pred HHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-CcccHHHHHHHHHhCCChhHHHH
Q 002846 374 IYEKMCLD----EVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINP-RLRSYGPALSVFCNNGDVDKACS 443 (874)
Q Consensus 374 lf~~M~~~----Gv~P-d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~----Gi~P-d~~tYn~LI~a~~k~G~~~~A~~ 443 (874)
.|++.... +-.+ ...++..+...+...|++++|...+++.... +..+ ....+..+-..|...|+.++|.+
T Consensus 71 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 150 (164)
T 3ro3_A 71 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 150 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHH
Confidence 99886652 1111 1457788889999999999999999877643 2111 13456667778889999999999
Q ss_pred HHHHHHH
Q 002846 444 VEEHMLE 450 (874)
Q Consensus 444 l~~eM~~ 450 (874)
.+++..+
T Consensus 151 ~~~~a~~ 157 (164)
T 3ro3_A 151 FAEKHLE 157 (164)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987654
No 172
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=93.59 E-value=1.3 Score=43.09 Aligned_cols=126 Identities=14% Similarity=0.010 Sum_probs=85.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC--------------cc
Q 002846 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI-NPR--------------LR 423 (874)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi-~Pd--------------~~ 423 (874)
+.+....|.+++|.++++.-... ..-....+..+-..+...|++++|...|++.....- .|+ ..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEE-KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp -----------CCCSGGGCCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 33444445555555555421111 001234567778888999999999999999887521 121 15
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 424 tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
.|..+-.+|.+.|++++|...++...... ..+...|..+-.+|...|++++|...|.+....
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 67777788889999999999999988753 246778888888999999999999999998876
No 173
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=93.55 E-value=0.083 Score=47.24 Aligned_cols=87 Identities=17% Similarity=0.072 Sum_probs=67.5
Q ss_pred hcCChhHHHHHHHHHHHCCC--CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHH
Q 002846 399 SMGDGDMAFDMVKRMKSLGI--NPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRV 476 (874)
Q Consensus 399 ~~G~~d~A~~l~~~M~~~Gi--~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A 476 (874)
..|++++|...|++..+.+. +-+...|..+-..|...|++++|...|+...+.. .-+...+..+-.++.+.|+.++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 46889999999999887641 2235667778888999999999999999998764 22467788888899999999999
Q ss_pred HHHHHHHHhc
Q 002846 477 YYLLHKLRTS 486 (874)
Q Consensus 477 ~~ll~~M~~~ 486 (874)
...|.+....
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998776
No 174
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=93.31 E-value=0.4 Score=54.76 Aligned_cols=116 Identities=7% Similarity=-0.007 Sum_probs=86.3
Q ss_pred hhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHH
Q 002846 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (874)
Q Consensus 294 ~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~ 373 (874)
+.+.|++++|.+.|++..+. .|+. ...| ..+-..|.+.|++++|.+
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~--~p~~---------------------~~~~-----------~~lg~~~~~~g~~~~A~~ 61 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL--NPSN---------------------AIYY-----------GNRSLAYLRTECYGYALG 61 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH--CTTC---------------------HHHH-----------HHHHHHHHHTTCHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHh--CCcc---------------------HHHH-----------HHHHHHHHHhcCHHHHHH
Confidence 77889999999999988775 2322 1122 667778889999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-cccHHHHHHH--HHhCCChhHHHHHHH
Q 002846 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSV--FCNNGDVDKACSVEE 446 (874)
Q Consensus 374 lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd-~~tYn~LI~a--~~k~G~~~~A~~l~~ 446 (874)
.|++..+.. +-+..+|..+-.+|...|++++|.+.|++..+. .|+ ...+..+-.+ +.+.|++++|.++++
T Consensus 62 ~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 62 DATRAIELD-KKYIKGYYRRAASNMALGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999988764 346788999999999999999999999998775 343 3344444444 778899999999988
No 175
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=93.14 E-value=0.71 Score=48.35 Aligned_cols=88 Identities=10% Similarity=0.026 Sum_probs=46.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CcccHHHHHHHHHhCCCh
Q 002846 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDV 438 (874)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~P-d~~tYn~LI~a~~k~G~~ 438 (874)
..+.+.|++++|...|++..... +-+...|..+-.+|.+.|++++|...+++..+. .| +...|..+-.+|...|+.
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~ 88 (281)
T 2c2l_A 12 NRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQCQLEMESY 88 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence 34445566666666665555432 124555555566666666666666666555433 22 233444455555555666
Q ss_pred hHHHHHHHHHHH
Q 002846 439 DKACSVEEHMLE 450 (874)
Q Consensus 439 ~~A~~l~~eM~~ 450 (874)
++|...|....+
T Consensus 89 ~~A~~~~~~al~ 100 (281)
T 2c2l_A 89 DEAIANLQRAYS 100 (281)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666655555443
No 176
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=93.12 E-value=0.19 Score=57.76 Aligned_cols=126 Identities=10% Similarity=-0.002 Sum_probs=84.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHC---CCCC---C-HHHHHHHHHHHHhcCChhHHHHHHHHHHHC-----C-CCCC-cccHH
Q 002846 361 EDAKKYAFQRGFEIYEKMCLD---EVPM---N-EASLTAVGRMAMSMGDGDMAFDMVKRMKSL-----G-INPR-LRSYG 426 (874)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~---Gv~P---d-~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~-----G-i~Pd-~~tYn 426 (874)
.+...|++++|..++++.... -+-| + ..+++.|...|...|++++|..++++.... | -.|+ ..+|+
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355678999999888776542 1222 2 457888999999999999999888876532 2 1233 45778
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHc---CCCCCH----HHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 427 PALSVFCNNGDVDKACSVEEHMLEH---GVYPEE----PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 427 ~LI~a~~k~G~~~~A~~l~~eM~~~---Gv~Pd~----~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
.|=..|...|++++|..++++..+- -+-||- .+.+.|-.++...|.+++|..++.++++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888899999998888765431 111332 22334444555667788888888887664
No 177
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=93.12 E-value=3 Score=44.65 Aligned_cols=226 Identities=8% Similarity=0.046 Sum_probs=148.1
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCCCCCCC-HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 002846 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSE-QFQLRVELDMCSKRG--DVMGAIRLYDKAQREGIKLGQYHYNVLLYLC 236 (874)
Q Consensus 160 ~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd-~~tyn~LI~a~~k~G--~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~ 236 (874)
+.+.....+|+++++.+... .|+ ...||.-=..+...| ++++++++++.+....-+ +...|+.--..+
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~--------nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL 113 (306)
T 3dra_A 43 MKAEEYSERALHITELGINE--------LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLII 113 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--------CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHH
Confidence 44445556899999998653 333 245776666677777 999999999999875422 334455433333
Q ss_pred ----HhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChH--HHHHHHHHH
Q 002846 237 ----SSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFD--DLDSTFNEK 310 (874)
Q Consensus 237 ----~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e--~A~~lf~eM 310 (874)
...+ ..++.++++..++ .+.+. .-.|-..|+----. +.+.|.++ ++++.++.|
T Consensus 114 ~~~~~~l~-------~~~~~~~EL~~~~-------~~l~~-~pkny~aW~~R~~v------l~~l~~~~~~~EL~~~~~~ 172 (306)
T 3dra_A 114 GQIMELNN-------NDFDPYREFDILE-------AMLSS-DPKNHHVWSYRKWL------VDTFDLHNDAKELSFVDKV 172 (306)
T ss_dssp HHHHHHTT-------TCCCTHHHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHhcc-------ccCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHhcccChHHHHHHHHHH
Confidence 3111 2367888988885 44443 33466667666555 66667777 999999999
Q ss_pred HHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCC------HHHHHHHHHHHHHCCCC
Q 002846 311 ENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYA------FQRGFEIYEKMCLDEVP 384 (874)
Q Consensus 311 ~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~------~~~A~~lf~~M~~~Gv~ 384 (874)
.+... .-| +.|... ..++. +.+. ++++++.++.+.... +
T Consensus 173 i~~d~----~N~----------------------sAW~~R-----~~ll~---~l~~~~~~~~~~eEl~~~~~aI~~~-p 217 (306)
T 3dra_A 173 IDTDL----KNN----------------------SAWSHR-----FFLLF---SKKHLATDNTIDEELNYVKDKIVKC-P 217 (306)
T ss_dssp HHHCT----TCH----------------------HHHHHH-----HHHHH---SSGGGCCHHHHHHHHHHHHHHHHHC-S
T ss_pred HHhCC----CCH----------------------HHHHHH-----HHHHH---hccccchhhhHHHHHHHHHHHHHhC-C
Confidence 87632 111 112111 12222 2233 788999999888764 4
Q ss_pred CCHHHHHHHHHHHHhcCChhH-HHHHHHHHHHCC--CCCCcccHHHHHHHHHhCCChhHHHHHHHHHHH
Q 002846 385 MNEASLTAVGRMAMSMGDGDM-AFDMVKRMKSLG--INPRLRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (874)
Q Consensus 385 Pd~~tyn~LI~~~~~~G~~d~-A~~l~~~M~~~G--i~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~ 450 (874)
-|...|+-+-..+.+.|+... +..+..++...+ -..+...+..+...|++.|+.++|.++++.+.+
T Consensus 218 ~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 218 QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 588999999888888888554 445555544332 123556677788899999999999999999875
No 178
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=93.02 E-value=5.9 Score=43.24 Aligned_cols=223 Identities=10% Similarity=-0.033 Sum_probs=137.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcccCCCcccCCC-CHHHHHHHHhhcccCchhhhhcCCCCchhhhH
Q 002846 205 GDVMGAIRLYDKAQREGIKLGQ-YHYNVLLYLCSSAAVGVVKPAKSG-SGMRTLDTFEVSTMNSTELGDSRDMDNNGQLD 282 (874)
Q Consensus 205 G~~~~Al~lf~~M~~~Gi~pd~-~tyn~LL~a~~~~~~~~~~~~k~G-~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn 282 (874)
+.-++|+++++.+.... |+. ..||.-=..+. ..| .+++++..++ .+... ...+...|+
T Consensus 68 e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~----------~l~~~l~eEL~~~~-------~~L~~-nPKny~aW~ 127 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN--PAHYTVWQYRFSLLT----------SLNKSLEDELRLMN-------EFAVQ-NLKSYQVWH 127 (349)
T ss_dssp CCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH----------HTTCCHHHHHHHHH-------HHHHT-TCCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHH----------HhhhhHHHHHHHHH-------HHHHh-CCCcHHHHH
Confidence 44468999999998653 443 34555444444 335 5888888885 33332 333555566
Q ss_pred hhhcCcccChhhhhc-C-ChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHH
Q 002846 283 YGSSPMIDKLESNSS-Y-RFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLS 360 (874)
Q Consensus 283 ~LI~~~~~~~~~~~~-g-~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~ 360 (874)
.--.. +.+. + ..++++++++.+.... .-.|+.|... .-++.
T Consensus 128 hR~wl------L~~l~~~~~~~EL~~~~k~L~~d--------------------------pkNy~AW~~R-----~wvl~ 170 (349)
T 3q7a_A 128 HRLLL------LDRISPQDPVSEIEYIHGSLLPD--------------------------PKNYHTWAYL-----HWLYS 170 (349)
T ss_dssp HHHHH------HHHHCCSCCHHHHHHHHHHTSSC--------------------------TTCHHHHHHH-----HHHHH
T ss_pred HHHHH------HHHhcCCChHHHHHHHHHHHHhC--------------------------CCCHHHHHHH-----HHHHH
Confidence 65444 4443 4 6677777777776542 1222223222 33444
Q ss_pred HHHhcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-------hhHHHHHHHHHHHCCCCCCcccHHHH
Q 002846 361 EDAKKY-----AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD-------GDMAFDMVKRMKSLGINPRLRSYGPA 428 (874)
Q Consensus 361 ~~~k~g-----~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~-------~d~A~~l~~~M~~~Gi~Pd~~tYn~L 428 (874)
.+.+.. .+.++++.+++|.+.. .-|...|+-.-..+.+.+. ++++++.+++..... .-|...|+-+
T Consensus 171 ~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Yl 248 (349)
T 3q7a_A 171 HFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYL 248 (349)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 444332 1358999999998865 4488889888888888776 688899888877652 2345666655
Q ss_pred HHHHHhCCCh--------------------hHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 002846 429 LSVFCNNGDV--------------------DKACSVEEHMLEHG-----VYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (874)
Q Consensus 429 I~a~~k~G~~--------------------~~A~~l~~eM~~~G-----v~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M 483 (874)
-..+.+.|.. ....++..++...+ -.+....+..|.+.|...|+.++|.++++.+
T Consensus 249 r~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l 328 (349)
T 3q7a_A 249 RGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKL 328 (349)
T ss_dssp HHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 5555555543 22333333333221 1467888899999999999999999999999
Q ss_pred Hhc
Q 002846 484 RTS 486 (874)
Q Consensus 484 ~~~ 486 (874)
.+.
T Consensus 329 ~~~ 331 (349)
T 3q7a_A 329 SSE 331 (349)
T ss_dssp HHT
T ss_pred Hhh
Confidence 865
No 179
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=92.74 E-value=0.48 Score=44.55 Aligned_cols=90 Identities=11% Similarity=0.051 Sum_probs=49.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC-------CC----------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc
Q 002846 360 SEDAKKYAFQRGFEIYEKMCLD-------EV----------PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422 (874)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~-------Gv----------~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~ 422 (874)
..+.+.|++++|...|.+.... .- +-+...|..+..+|.+.|++++|...+++..... +.+.
T Consensus 19 ~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~ 97 (162)
T 3rkv_A 19 NELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNE 97 (162)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-Ccch
Confidence 5667889999999999876653 00 1122455555555556666666666655554431 1123
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHH
Q 002846 423 RSYGPALSVFCNNGDVDKACSVEEHMLE 450 (874)
Q Consensus 423 ~tYn~LI~a~~k~G~~~~A~~l~~eM~~ 450 (874)
..|..+-.+|...|++++|...|+....
T Consensus 98 ~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 98 KALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 3444444445555555555555554443
No 180
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=92.74 E-value=0.37 Score=51.24 Aligned_cols=132 Identities=11% Similarity=-0.042 Sum_probs=89.2
Q ss_pred hhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHH
Q 002846 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (874)
Q Consensus 294 ~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~ 373 (874)
+...|++++|.++|..+...+ |+-+.. -.+-..+.+.+++++|+.
T Consensus 112 L~~~g~y~eA~~~l~~~~~~~--p~~~~~---------------------------------~~~a~l~~~~~r~~dA~~ 156 (282)
T 4f3v_A 112 EAAQGNYADAMEALEAAPVAG--SEHLVA---------------------------------WMKAVVYGAAERWTDVID 156 (282)
T ss_dssp HHHHTCHHHHHHHHTSSCCTT--CHHHHH---------------------------------HHHHHHHHHTTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhcC--CchHHH---------------------------------HHHHHHHHHcCCHHHHHH
Confidence 667788888888887665543 221111 233346788999999999
Q ss_pred HHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcc--cHHHHHHHHHhCCChhHHHHHHHHHH
Q 002846 374 IYEKMCLDEVPMN--EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR--SYGPALSVFCNNGDVDKACSVEEHML 449 (874)
Q Consensus 374 lf~~M~~~Gv~Pd--~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~--tYn~LI~a~~k~G~~~~A~~l~~eM~ 449 (874)
.|+...... .|. ...+..|=.++...|++++|+..|++.......|... .....-.++.+.|+.++|..+|+.+.
T Consensus 157 ~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~ 235 (282)
T 4f3v_A 157 QVKSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ 235 (282)
T ss_dssp HHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 998543321 111 2367778888999999999999999987443325532 23334556678899999999999999
Q ss_pred HcCCCCCHHHHHHH
Q 002846 450 EHGVYPEEPELEAL 463 (874)
Q Consensus 450 ~~Gv~Pd~~ty~~L 463 (874)
... |+...+.+|
T Consensus 236 a~~--P~~~~~~aL 247 (282)
T 4f3v_A 236 TTH--PEPKVAAAL 247 (282)
T ss_dssp HHS--CCHHHHHHH
T ss_pred hcC--CcHHHHHHH
Confidence 854 664444433
No 181
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=92.70 E-value=0.63 Score=53.46 Aligned_cols=59 Identities=10% Similarity=-0.143 Sum_probs=44.4
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002846 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQ-FQLRVELDMCSKRGDVMGAIRLYDKAQ 218 (874)
Q Consensus 160 ~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~-~tyn~LI~a~~k~G~~~~Al~lf~~M~ 218 (874)
+...++.++|..++++......+.-....|++ .+++.|-..|...|++++|+.++++..
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL 378 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMV 378 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 44678899999999886553322222235654 578999999999999999999999875
No 182
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=92.42 E-value=0.65 Score=52.53 Aligned_cols=127 Identities=9% Similarity=-0.022 Sum_probs=91.9
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN--------------EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR 421 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd--------------~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd 421 (874)
..+=..|.+.|++++|...|++.....-.-. ...|..+-.+|.+.|++++|...+++..+.. .-+
T Consensus 272 ~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~ 350 (457)
T 1kt0_A 272 KEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SAN 350 (457)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-Ccc
Confidence 4444677889999999999998876421111 5788999999999999999999999888753 234
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCchHHH-HHHHHHHh
Q 002846 422 LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVY-YLLHKLRT 485 (874)
Q Consensus 422 ~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~P-d~~ty~~LI~~~~~~G~~d~A~-~ll~~M~~ 485 (874)
...|..+-.+|...|++++|...|+...+. .| +...+..|-..+.+.|+.++|. .++..|..
T Consensus 351 ~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 351 EKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667777888889999999999999998874 35 3456666767777777776655 34444443
No 183
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=92.19 E-value=0.48 Score=40.70 Aligned_cols=90 Identities=10% Similarity=-0.026 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-------HH
Q 002846 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-------EP 458 (874)
Q Consensus 386 d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd-------~~ 458 (874)
+...|..+-..+...|++++|...|++..+.. +.+...|..+-..|.+.|++++|.+.++...+. .|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 34556666777777777777777777766542 123455666666677777777777777777653 244 33
Q ss_pred HHHHHHHHHHhcCCchHHHH
Q 002846 459 ELEALLRVSVEAGKGDRVYY 478 (874)
Q Consensus 459 ty~~LI~~~~~~G~~d~A~~ 478 (874)
.+..+-.++...|+.+.|..
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHHHhHhhhHh
Confidence 33444444444444444433
No 184
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=91.91 E-value=0.81 Score=47.90 Aligned_cols=98 Identities=14% Similarity=-0.003 Sum_probs=82.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 002846 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464 (874)
Q Consensus 386 d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~P-d~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI 464 (874)
+...+..+-..+...|++++|...|++.... .| +...|..+-..|.+.|++++|...++...+.. .-+...|..+-
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 4567888889999999999999999998875 35 56777778888999999999999999988743 23567888888
Q ss_pred HHHHhcCCchHHHHHHHHHHhc
Q 002846 465 RVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 465 ~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
.+|...|++++|...|.+....
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 8999999999999999987764
No 185
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=91.84 E-value=0.48 Score=41.68 Aligned_cols=77 Identities=16% Similarity=-0.005 Sum_probs=42.3
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHH
Q 002846 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHML 449 (874)
Q Consensus 371 A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~ 449 (874)
|.+.|++..... +-+...+..+-..|...|++++|...|++..... ..+...|..+-..|...|+.++|...|+...
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455555555432 2345566666666666777777776666665442 1123344445555555566666655555544
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=91.65 E-value=0.67 Score=51.01 Aligned_cols=117 Identities=15% Similarity=0.138 Sum_probs=75.0
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHC--------------CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLD--------------EV-PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP 420 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~--------------Gv-~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~P 420 (874)
..+-..+.+.|++++|.+.|++.... .. .-+..+|..+..+|.+.|++++|...+++..+. .|
T Consensus 227 ~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p 304 (370)
T 1ihg_A 227 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI--DP 304 (370)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--Cc
Confidence 34446677899999999999887651 01 123466777777777888888888888777654 33
Q ss_pred -CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCchHH
Q 002846 421 -RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRV 476 (874)
Q Consensus 421 -d~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~P-d~~ty~~LI~~~~~~G~~d~A 476 (874)
+...|..+-.+|...|+.++|.+.|+...+.. | +...+..|-..+...++.+++
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHH
Confidence 34556666667777777777777777766542 4 344444444444444444433
No 187
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=90.93 E-value=1.8 Score=40.10 Aligned_cols=111 Identities=13% Similarity=0.062 Sum_probs=87.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHh----CCChhH
Q 002846 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN----NGDVDK 440 (874)
Q Consensus 365 ~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k----~G~~~~ 440 (874)
.++.++|++.|++-.+.| .|+.. |-..|...+.+++|++.|++-.+.| +...+..|=..|.. .++.++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 457889999999999988 33333 6666777788999999999988875 34555556566666 789999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCchHHHHHHHHHHhc
Q 002846 441 ACSVEEHMLEHGVYPEEPELEALLRVSVE----AGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 441 A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~----~G~~d~A~~ll~~M~~~ 486 (874)
|.+.|+...+.| +...+..|=..|.. .++.++|..+|.+-.+.
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 999999998876 56677777777777 78899999999988876
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=90.90 E-value=1.8 Score=40.48 Aligned_cols=98 Identities=18% Similarity=0.139 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHC-------CC---------CC-CcccHHHHHHHHHhCCChhHHHHHHHHHHH
Q 002846 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSL-------GI---------NP-RLRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (874)
Q Consensus 388 ~tyn~LI~~~~~~G~~d~A~~l~~~M~~~-------Gi---------~P-d~~tYn~LI~a~~k~G~~~~A~~l~~eM~~ 450 (874)
..+...-..+.+.|++++|...|.+.... .- .| +...|..+-.+|.+.|++++|...++...+
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 45566677888999999999999887654 00 11 235677788889999999999999999887
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 451 HGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 451 ~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
.. .-+...|..+-.+|...|++++|...|.+....
T Consensus 92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 54 235778888999999999999999999998876
No 189
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=89.79 E-value=1.5 Score=52.32 Aligned_cols=104 Identities=11% Similarity=0.058 Sum_probs=71.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChh
Q 002846 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (874)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~ 439 (874)
......|++++|+++.+.+ .+...|..|.+.+.+.|+++.|.++|..+.. |..+..-|...|+.+
T Consensus 660 ~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~ 724 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKE 724 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHH
T ss_pred ehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHH
Confidence 3445678888888886543 3678899999999999999999999987643 455666666677777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 002846 440 KACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (874)
Q Consensus 440 ~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~ 484 (874)
...++-+.....|- ++.-..+|.+.|++++|.+++.++.
T Consensus 725 ~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 725 GLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 66666555555441 2334444556677777777766554
No 190
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=89.64 E-value=2.3 Score=34.77 Aligned_cols=64 Identities=19% Similarity=0.231 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 002846 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (874)
Q Consensus 387 ~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~ 451 (874)
...+..+-..+...|++++|...|++..... ..+...+..+-..|.+.|+.++|...|+...+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3455666666777777777777777665542 123444555556666667777776666666553
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=89.63 E-value=0.39 Score=52.02 Aligned_cols=124 Identities=9% Similarity=-0.016 Sum_probs=65.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH------------------HHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 002846 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEA------------------SLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN 419 (874)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~------------------tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~ 419 (874)
+-..+.+.|++++|...|++.... .|+.. .|..+-.+|.+.|++++|...+++..+.. .
T Consensus 185 ~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 261 (338)
T 2if4_A 185 DGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE-E 261 (338)
T ss_dssp HHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC-T
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 334556788999999999987653 34433 67778888888888888888888776642 1
Q ss_pred CCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHH-HHhcCCchHHHHHHHHHHhc
Q 002846 420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP-ELEALLRV-SVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 420 Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~-ty~~LI~~-~~~~G~~d~A~~ll~~M~~~ 486 (874)
-+...|..+-.+|...|++++|...|+...+. .|+.. .+..|-.. ....+..+++..+|..|...
T Consensus 262 ~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 262 KNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 24566777777888888888888888876543 34332 23333222 12345556667777766554
No 192
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=88.41 E-value=4 Score=45.93 Aligned_cols=97 Identities=12% Similarity=-0.011 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----------------cccHHHHHHHHHhCCChhHHHHHHHHHHH
Q 002846 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----------------LRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (874)
Q Consensus 387 ~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd----------------~~tYn~LI~a~~k~G~~~~A~~l~~eM~~ 450 (874)
...|..+-..|.+.|++++|...|++..+. .|+ ...|..+-.+|.+.|++++|...++...+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 346777888899999999999999988764 244 36788888899999999999999999887
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 451 HGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 451 ~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
.. .-+...|..+-.+|...|++++|...|++..+.
T Consensus 346 ~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 346 LD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 54 236778888889999999999999999998875
No 193
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=88.29 E-value=1.8 Score=37.83 Aligned_cols=80 Identities=9% Similarity=-0.035 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 002846 405 MAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (874)
Q Consensus 405 ~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~ 484 (874)
.|...|++..+.. .-+...|..+-..|...|++++|...|+...... ..+...|..|-..|...|+.++|...|.+..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5677777776542 2345677778888999999999999999988754 2356788888889999999999999999887
Q ss_pred hc
Q 002846 485 TS 486 (874)
Q Consensus 485 ~~ 486 (874)
..
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 194
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=87.87 E-value=1.8 Score=37.35 Aligned_cols=64 Identities=9% Similarity=0.085 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHH
Q 002846 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (874)
Q Consensus 386 d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~ 450 (874)
+...+..+-..|...|++++|...|++..+..- -+...|..+-.+|...|+.++|.+.|+...+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 556777778888888888888888887776531 2345666677777788888888888776554
No 195
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=87.54 E-value=3.4 Score=45.21 Aligned_cols=97 Identities=14% Similarity=0.031 Sum_probs=79.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHC--------------CCCC-CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 002846 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSL--------------GINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGV 453 (874)
Q Consensus 389 tyn~LI~~~~~~G~~d~A~~l~~~M~~~--------------Gi~P-d~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv 453 (874)
.|..+-..+.+.|++++|...|++..+. ...| +...|..+-.+|.+.|++++|.+.++...+..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 4667788899999999999999987751 0122 34677778888899999999999999998753
Q ss_pred CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 454 YPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 454 ~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
.-+...|..+-.+|...|++++|...|++..+.
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 225678888888999999999999999998876
No 196
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=87.45 E-value=13 Score=40.46 Aligned_cols=227 Identities=11% Similarity=-0.005 Sum_probs=135.3
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 002846 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRG-DVMGAIRLYDKAQREGIKLGQYHYNVLLYLCS 237 (874)
Q Consensus 159 ~~~k~~~~~~A~~vf~eM~~~g~k~~~g~~Pd~~tyn~LI~a~~k~G-~~~~Al~lf~~M~~~Gi~pd~~tyn~LL~a~~ 237 (874)
.+.+.....+|+++++.+.... |+ +..+|+.-=..+...| ++++++.+++.+....- -+...|+.--.++.
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~n--P~-----~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~ 134 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMN--PA-----HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC--TT-----CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHhC--ch-----hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHH
Confidence 3445556678999999986532 11 2245666656666677 59999999999997542 35566776555555
Q ss_pred hcccCCCcccCCC-CHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCChH--------HHHHHHH
Q 002846 238 SAAVGVVKPAKSG-SGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFD--------DLDSTFN 308 (874)
Q Consensus 238 ~~~~~~~~~~k~G-~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e--------~A~~lf~ 308 (874)
.. .+ ..++++..++ .+.+. ...|...|+--.-. +.+.+.++ ++++.++
T Consensus 135 ~l---------~~~~~~~EL~~~~-------k~L~~-dpkNy~AW~~R~wv------l~~l~~~~~~~~~~~~eELe~~~ 191 (349)
T 3q7a_A 135 RI---------SPQDPVSEIEYIH-------GSLLP-DPKNYHTWAYLHWL------YSHFSTLGRISEAQWGSELDWCN 191 (349)
T ss_dssp HH---------CCSCCHHHHHHHH-------HHTSS-CTTCHHHHHHHHHH------HHHHHHTTCCCHHHHHHHHHHHH
T ss_pred Hh---------cCCChHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHhccccccchhhHHHHHHHHH
Confidence 21 13 5678888874 44433 33355666654444 33444444 7788888
Q ss_pred HHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCC-------HHHHHHHHHHHHHC
Q 002846 309 EKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYA-------FQRGFEIYEKMCLD 381 (874)
Q Consensus 309 eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~-------~~~A~~lf~~M~~~ 381 (874)
+|.+.... |... | +-.-..+.+.+. ++++++.++++...
T Consensus 192 k~I~~dp~-N~SA----------------------W-----------~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~ 237 (349)
T 3q7a_A 192 EMLRVDGR-NNSA----------------------W-----------GWRWYLRVSRPGAETSSRSLQDELIYILKSIHL 237 (349)
T ss_dssp HHHHHCTT-CHHH----------------------H-----------HHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCC-CHHH----------------------H-----------HHHHHHHHhccccccchHHHHHHHHHHHHHHHh
Confidence 77775311 1111 1 111111122222 68899999888875
Q ss_pred CCCCCHHHHHHHHHHHHhcCCh--------------------hHHHHHHHHHHHCC-----CCCCcccHHHHHHHHHhCC
Q 002846 382 EVPMNEASLTAVGRMAMSMGDG--------------------DMAFDMVKRMKSLG-----INPRLRSYGPALSVFCNNG 436 (874)
Q Consensus 382 Gv~Pd~~tyn~LI~~~~~~G~~--------------------d~A~~l~~~M~~~G-----i~Pd~~tYn~LI~a~~k~G 436 (874)
. +-|...|+-+-..+.+.|+. ....+...++...+ -.+......-|...|+..|
T Consensus 238 ~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~ 316 (349)
T 3q7a_A 238 I-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQN 316 (349)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTT
T ss_pred C-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcC
Confidence 3 44888898877777777664 12222222222111 0234455566888999999
Q ss_pred ChhHHHHHHHHHHHc
Q 002846 437 DVDKACSVEEHMLEH 451 (874)
Q Consensus 437 ~~~~A~~l~~eM~~~ 451 (874)
+.++|.++++.+.+.
T Consensus 317 ~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 317 RVDDAAKVFEKLSSE 331 (349)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999998643
No 197
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=86.98 E-value=7 Score=37.68 Aligned_cols=103 Identities=8% Similarity=0.024 Sum_probs=67.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCC-C-----CH-----HHHHHHHHHHHhcCChhHHHHHHHHHHHC-----CCCCCc-
Q 002846 360 SEDAKKYAFQRGFEIYEKMCLDEVP-M-----NE-----ASLTAVGRMAMSMGDGDMAFDMVKRMKSL-----GINPRL- 422 (874)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~Gv~-P-----d~-----~tyn~LI~~~~~~G~~d~A~~l~~~M~~~-----Gi~Pd~- 422 (874)
..+.+.|++++|.+.|++-.+-.-. | +. ..|+.+-.++.+.|++++|+..+++..+. -+.|+.
T Consensus 19 ~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~ 98 (159)
T 2hr2_A 19 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEG 98 (159)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchH
Confidence 4566789999999999987764211 1 22 38888888888999999998888877653 124542
Q ss_pred ccH----HHHHHHHHhCCChhHHHHHHHHHHH-----cCCCCCHHHHHH
Q 002846 423 RSY----GPALSVFCNNGDVDKACSVEEHMLE-----HGVYPEEPELEA 462 (874)
Q Consensus 423 ~tY----n~LI~a~~k~G~~~~A~~l~~eM~~-----~Gv~Pd~~ty~~ 462 (874)
..| ...=.++...|+.++|...|+...+ .|+.+.......
T Consensus 99 ~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~ 147 (159)
T 2hr2_A 99 KLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMME 147 (159)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHH
T ss_pred HHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 344 4455566677777777777776643 244444444333
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=86.93 E-value=0.98 Score=38.69 Aligned_cols=64 Identities=11% Similarity=0.171 Sum_probs=52.8
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~ 422 (874)
..+-..+.+.|++++|.+.|++..... +.+...|..+-.++...|++++|...+++..+. .|+.
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~ 71 (111)
T 2l6j_A 8 KEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTA 71 (111)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCc
Confidence 445567778999999999999988753 346788999999999999999999999998765 4654
No 199
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=86.57 E-value=7.5 Score=35.68 Aligned_cols=83 Identities=13% Similarity=-0.012 Sum_probs=67.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHh----C
Q 002846 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN----N 435 (874)
Q Consensus 364 k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~----~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k----~ 435 (874)
..+.+++|++.|++-.+.| +...+..|-..|.. .++.++|+..|++-.+.|. ...+..|=..|.. .
T Consensus 37 ~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~a~~~Lg~~y~~G~g~~ 110 (138)
T 1klx_A 37 SQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLND---QDGCLILGYKQYAGKGVV 110 (138)
T ss_dssp TTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSC
T ss_pred cCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCCC---HHHHHHHHHHHHCCCCCC
Confidence 3456788999999998887 67888888888888 8999999999999988764 4455556666777 7
Q ss_pred CChhHHHHHHHHHHHcC
Q 002846 436 GDVDKACSVEEHMLEHG 452 (874)
Q Consensus 436 G~~~~A~~l~~eM~~~G 452 (874)
++.++|.+.|+.-.+.|
T Consensus 111 ~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 111 KNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHCC
Confidence 89999999999888776
No 200
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=85.06 E-value=3.2 Score=46.64 Aligned_cols=85 Identities=13% Similarity=0.069 Sum_probs=45.1
Q ss_pred hcCChhHHHHHHHHHHHC--C-CCCC----cccHHHHHHHHHhCCChhHHHHHHHHHHHc-----C-CCCC-HHHHHHHH
Q 002846 399 SMGDGDMAFDMVKRMKSL--G-INPR----LRSYGPALSVFCNNGDVDKACSVEEHMLEH-----G-VYPE-EPELEALL 464 (874)
Q Consensus 399 ~~G~~d~A~~l~~~M~~~--G-i~Pd----~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~-----G-v~Pd-~~ty~~LI 464 (874)
+.|++++|..++++..+. . +-|+ ..+++.|...|...|++++|..++++..+- | -.|+ ..+|+.|-
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence 345566666666555432 1 1122 345555666666666666666666554321 1 1122 24456666
Q ss_pred HHHHhcCCchHHHHHHHHH
Q 002846 465 RVSVEAGKGDRVYYLLHKL 483 (874)
Q Consensus 465 ~~~~~~G~~d~A~~ll~~M 483 (874)
..|...|++++|..++.+.
T Consensus 379 ~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 379 KLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHH
Confidence 6666677777776666653
No 201
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=84.21 E-value=3.1 Score=46.82 Aligned_cols=83 Identities=11% Similarity=-0.013 Sum_probs=42.5
Q ss_pred CChhHHHHHHHHHHHC---CCCCC----cccHHHHHHHHHhCCChhHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHH
Q 002846 401 GDGDMAFDMVKRMKSL---GINPR----LRSYGPALSVFCNNGDVDKACSVEEHMLEH-----G-VYPE-EPELEALLRV 466 (874)
Q Consensus 401 G~~d~A~~l~~~M~~~---Gi~Pd----~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~-----G-v~Pd-~~ty~~LI~~ 466 (874)
|++++|..++++..+. -+-|+ ..+|+.|-..|...|++++|..+++...+- | -.|+ ..+|+.|-..
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4555555555544321 11122 345555666666666666666665554321 2 1122 2345666666
Q ss_pred HHhcCCchHHHHHHHHH
Q 002846 467 SVEAGKGDRVYYLLHKL 483 (874)
Q Consensus 467 ~~~~G~~d~A~~ll~~M 483 (874)
|...|++++|..++.+.
T Consensus 392 ~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 392 YMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHH
Confidence 66666666666666553
No 202
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=84.18 E-value=14 Score=42.05 Aligned_cols=118 Identities=9% Similarity=0.053 Sum_probs=80.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCChhHHHHHHHHHHHCCCCCCc-ccHHHHHHHHHhC
Q 002846 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLT--AVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNN 435 (874)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn--~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~-~tYn~LI~a~~k~ 435 (874)
+..+-+.+.++.|..+|+.....+ .+...|. +.+...+ .++++.|..+|+...+.- |+. ..+...+....+.
T Consensus 293 ~~~~~r~~~~~~AR~i~~~A~~~~--~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e~~~ 367 (493)
T 2uy1_A 293 LNYVLKKRGLELFRKLFIELGNEG--VGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFLLRI 367 (493)
T ss_dssp HHHHHHHHCHHHHHHHHHHHTTSC--CCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHhhCCC--CChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHc
Confidence 344445667888888888872222 2333443 3333322 236899999998877642 332 2345566667778
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 436 G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
|+.+.|..+|+... .....|...++.=...|+.+.+..+++++...
T Consensus 368 ~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~ 413 (493)
T 2uy1_A 368 GDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMDA 413 (493)
T ss_dssp TCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999872 35778888888878889999999999888764
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=83.98 E-value=5.5 Score=32.35 Aligned_cols=60 Identities=20% Similarity=0.190 Sum_probs=50.2
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~ 416 (874)
..+-..+.+.|++++|...|++..... +.+..++..+...+...|++++|...|++..+.
T Consensus 13 ~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 13 YNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 344466778999999999999988753 336778999999999999999999999998765
No 204
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=83.92 E-value=3 Score=44.90 Aligned_cols=96 Identities=10% Similarity=-0.077 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcc------------------cHHHHHHHHHhCCChhHHHHHHHHHH
Q 002846 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR------------------SYGPALSVFCNNGDVDKACSVEEHML 449 (874)
Q Consensus 388 ~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~------------------tYn~LI~a~~k~G~~~~A~~l~~eM~ 449 (874)
..+..+-..+.+.|++++|...|++.... .|+.. .|..+-.+|.+.|++++|...++...
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34556677788899999999999987654 34433 67778888899999999999999988
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 450 EHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 450 ~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
+.. .-+...|..+-.+|...|++++|...|++....
T Consensus 258 ~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 258 TEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 753 236778888999999999999999999987754
No 205
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=83.87 E-value=14 Score=40.48 Aligned_cols=140 Identities=9% Similarity=-0.024 Sum_probs=92.0
Q ss_pred chHHHHHHh--c---CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH----hcC-ChhHHHH---HHHHHHHC-CCCC
Q 002846 356 EIRLSEDAK--K---YAFQRGFEIYEKMCLDEVPMN-EASLTAVGRMAM----SMG-DGDMAFD---MVKRMKSL-GINP 420 (874)
Q Consensus 356 n~lI~~~~k--~---g~~~~A~~lf~~M~~~Gv~Pd-~~tyn~LI~~~~----~~G-~~d~A~~---l~~~M~~~-Gi~P 420 (874)
...+.+... . ..+.+|.++|++..+. .|+ ...|..+.-+|. ..+ ....... .++..... .-..
T Consensus 198 dl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~ 275 (372)
T 3ly7_A 198 TNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNN 275 (372)
T ss_dssp HHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCc
Confidence 566654432 2 3468999999998875 354 344443333332 111 1111111 12211111 2245
Q ss_pred CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCChhHHHHHHH
Q 002846 421 RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAK 500 (874)
Q Consensus 421 d~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~T~~~I~~ 500 (874)
+..+|..+-..+...|++++|...++.....+ |+...|..+=..+.-.|+.++|.+.+.+-... .|++.||..+..
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~~~~~ 351 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLYWIEN 351 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHHHHhC
Confidence 66777777666667799999999999999976 88888877777788999999999999988887 788878766554
Q ss_pred H
Q 002846 501 W 501 (874)
Q Consensus 501 ~ 501 (874)
.
T Consensus 352 l 352 (372)
T 3ly7_A 352 G 352 (372)
T ss_dssp S
T ss_pred c
Confidence 4
No 206
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=82.94 E-value=10 Score=36.53 Aligned_cols=96 Identities=11% Similarity=0.044 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--------cc-----cHHHHHHHHHhCCChhHHHHHHHHHHHc----
Q 002846 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR--------LR-----SYGPALSVFCNNGDVDKACSVEEHMLEH---- 451 (874)
Q Consensus 389 tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd--------~~-----tYn~LI~a~~k~G~~~~A~~l~~eM~~~---- 451 (874)
.+..+-..+.+.|++++|...|++..+. .|+ .. .|+.+=.++.+.|++++|...++...+.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 3445556678899999999999987764 344 22 7888888899999999999999998874
Q ss_pred -CCCCCH-HHH----HHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 452 -GVYPEE-PEL----EALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 452 -Gv~Pd~-~ty----~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
.+.|+. ..| ..+=.++...|++++|+..|++..+.
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 125754 455 66677888999999999999987653
No 207
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=82.44 E-value=4.2 Score=45.63 Aligned_cols=93 Identities=11% Similarity=0.053 Sum_probs=70.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC--C-CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC-----C-CCCC-cc
Q 002846 358 RLSEDAKKYAFQRGFEIYEKMCLD--E-VPMN----EASLTAVGRMAMSMGDGDMAFDMVKRMKSL-----G-INPR-LR 423 (874)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~--G-v~Pd----~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~-----G-i~Pd-~~ 423 (874)
.|..+.+.|++++|.+++++..+. . +.|+ ..+++.|...|...|++++|..++++.... | -.|+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 356677889999999999888753 1 2232 457899999999999999999999977543 2 2233 46
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHH
Q 002846 424 SYGPALSVFCNNGDVDKACSVEEHMLE 450 (874)
Q Consensus 424 tYn~LI~a~~k~G~~~~A~~l~~eM~~ 450 (874)
+|+.|=..|...|++++|..++++..+
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 778888889999999999998887654
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=81.18 E-value=3.6 Score=35.30 Aligned_cols=59 Identities=15% Similarity=0.187 Sum_probs=49.5
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKS 415 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~ 415 (874)
..+-..|.+.|++++|.+.|++..+.. +-+...|..+-.+|...|++++|.+.|++..+
T Consensus 11 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 11 YALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455567788999999999999988764 23567899999999999999999999987654
No 209
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=80.47 E-value=8.4 Score=43.92 Aligned_cols=90 Identities=8% Similarity=0.051 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHH-----HHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHH
Q 002846 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP-----ALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPEL 460 (874)
Q Consensus 387 ~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~-----LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd-~~ty 460 (874)
...|-..++..-+.+.++.|..+|+.. .. |. .++.. .+...+ .++.+.|..+|+...+.- |+ ...|
T Consensus 286 ~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~---~~-~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~--~~~~~~~ 357 (493)
T 2uy1_A 286 DLLRINHLNYVLKKRGLELFRKLFIEL-GN---EG-VGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH--PDSTLLK 357 (493)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHH-TT---SC-CCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC--TTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHh-hC---CC-CChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC--CCCHHHH
Confidence 356777788877888999999999988 22 33 23332 333222 347999999999988753 43 4456
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHH
Q 002846 461 EALLRVSVEAGKGDRVYYLLHKLR 484 (874)
Q Consensus 461 ~~LI~~~~~~G~~d~A~~ll~~M~ 484 (874)
...++...+.|+.+.|..+|++..
T Consensus 358 ~~yid~e~~~~~~~~aR~l~er~~ 381 (493)
T 2uy1_A 358 EEFFLFLLRIGDEENARALFKRLE 381 (493)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHSC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 667888888999999999999973
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=80.39 E-value=4.8 Score=45.31 Aligned_cols=86 Identities=7% Similarity=-0.079 Sum_probs=65.1
Q ss_pred cCCHHHHHHHHHHHHH---CCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC-----C-CCCC-cccHHHHHH
Q 002846 365 KYAFQRGFEIYEKMCL---DEVPMN----EASLTAVGRMAMSMGDGDMAFDMVKRMKSL-----G-INPR-LRSYGPALS 430 (874)
Q Consensus 365 ~g~~~~A~~lf~~M~~---~Gv~Pd----~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~-----G-i~Pd-~~tYn~LI~ 430 (874)
.|++++|..++++... .-+.|+ ..+++.|..+|...|++++|..++++.... | -.|+ ..+|+.|=.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 5688999999987654 222232 467899999999999999999999877543 2 2233 467888888
Q ss_pred HHHhCCChhHHHHHHHHHHH
Q 002846 431 VFCNNGDVDKACSVEEHMLE 450 (874)
Q Consensus 431 a~~k~G~~~~A~~l~~eM~~ 450 (874)
.|...|+.++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 89999999999999887654
No 211
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=80.06 E-value=13 Score=44.19 Aligned_cols=77 Identities=13% Similarity=0.207 Sum_probs=59.2
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhC
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~ 435 (874)
..+-..+.+.++++.|.+.|..+.. |..|...|...|+.+...++-+.....|. |+....+|.+.
T Consensus 685 ~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~ 749 (814)
T 3mkq_A 685 RALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIA 749 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHc
Confidence 7788889999999999999998764 56677778888888887777666666553 56666677777
Q ss_pred CChhHHHHHHHH
Q 002846 436 GDVDKACSVEEH 447 (874)
Q Consensus 436 G~~~~A~~l~~e 447 (874)
|++++|.+++.+
T Consensus 750 g~~~~a~~~~~~ 761 (814)
T 3mkq_A 750 GDIQGAKDLLIK 761 (814)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 888777766544
No 212
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=79.79 E-value=14 Score=36.28 Aligned_cols=104 Identities=10% Similarity=0.127 Sum_probs=81.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCCh
Q 002846 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDV 438 (874)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~ 438 (874)
.+-....|+++.|.++-+++ -+...|..|-+.....|+++-|.+.|.... -|..+.--|.-.|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~---------D~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH---------SFDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT---------CHHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC---------CHHHHHHHHHHhCCH
Confidence 34456789999999998887 378999999999999999999999998753 256677778888998
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 002846 439 DKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (874)
Q Consensus 439 ~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M 483 (874)
++-..+-+.-...| -++.-...+.-.|+++++.++|.+.
T Consensus 77 e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 88776666555544 2455566666789999999998654
No 213
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=78.79 E-value=70 Score=34.36 Aligned_cols=236 Identities=8% Similarity=-0.029 Sum_probs=130.4
Q ss_pred HHHHHHHH---HHHHcCCHH-HHHHHHHHHHHcCCCCCHHH-HHH---HHHHHHhcccCCCccc-CCCCHHHHHHHHhhc
Q 002846 192 FQLRVELD---MCSKRGDVM-GAIRLYDKAQREGIKLGQYH-YNV---LLYLCSSAAVGVVKPA-KSGSGMRTLDTFEVS 262 (874)
Q Consensus 192 ~tyn~LI~---a~~k~G~~~-~Al~lf~~M~~~Gi~pd~~t-yn~---LL~a~~~~~~~~~~~~-k~G~~~~A~~vf~v~ 262 (874)
..|..+++ ...+.|.+. +|+.+++.+... .|+.+| ||. +|....... .|. ....+++++..++
T Consensus 27 ~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~----~~~~~~~~l~~EL~~~~-- 98 (331)
T 3dss_A 27 KLYQSATQAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEK----SPEESAALVKAELGFLE-- 98 (331)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccc----cchhhhHHHHHHHHHHH--
Confidence 34444443 345677765 899999999854 455443 332 222222100 000 0011445666663
Q ss_pred ccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcC--ChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCC
Q 002846 263 TMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSY--RFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDD 340 (874)
Q Consensus 263 ~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g--~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd 340 (874)
.+... .-.+...|+.--.. +.+.+ .+++++.+++.|.+.. .
T Consensus 99 -----~~L~~-~PKny~aW~hR~wl------L~~l~~~~~~~EL~~~~k~l~~d----p--------------------- 141 (331)
T 3dss_A 99 -----SCLRV-NPKSYGTWHHRCWL------LSRLPEPNWARELELCARFLEAD----E--------------------- 141 (331)
T ss_dssp -----HHHHH-CTTCHHHHHHHHHH------HHHCSSCCHHHHHHHHHHHHHHC----T---------------------
T ss_pred -----HHHHh-CCCCHHHHHHHHHH------HhccCcccHHHHHHHHHHHHHhC----C---------------------
Confidence 33322 22355556555444 44555 4788888888887752 1
Q ss_pred cccccccccccCCccchHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------------CChhH
Q 002846 341 QSRKKDWSIDNQDADEIRLSEDAKKYA-FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM--------------GDGDM 405 (874)
Q Consensus 341 ~~ty~~w~i~~~~~~n~lI~~~~k~g~-~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~--------------G~~d~ 405 (874)
-.|+.|... .-+ +.+.|. .+++++.++.+.+.. +-|...|+-.-..+... +.+++
T Consensus 142 -rNy~AW~~R-----~~v---l~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~e 211 (331)
T 3dss_A 142 -RNFHCWDYR-----RFV---AAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLK 211 (331)
T ss_dssp -TCHHHHHHH-----HHH---HHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHH
T ss_pred -CCHHHHHHH-----HHH---HHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHH
Confidence 112222211 222 234455 589999999998865 44777887766666554 45778
Q ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHHHhC-----------CChhHHHHHHHHHHHcCCCCCHHHHHHHH-----HHHHh
Q 002846 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNN-----------GDVDKACSVEEHMLEHGVYPEEPELEALL-----RVSVE 469 (874)
Q Consensus 406 A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~-----------G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI-----~~~~~ 469 (874)
+++.+....... +-|...|+-+-..+.+. +.++++.+.++++.+. .||. .|+.+- .+...
T Consensus 212 Ele~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~-~w~l~~~~~~~~~~~~ 287 (331)
T 3dss_A 212 ELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPEN-KWCLLTIILLMRALDP 287 (331)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Cccc-chHHHHHHHHHHhhcc
Confidence 888888777652 22445555433333333 3578889999998874 3654 343221 12223
Q ss_pred cCCchHHHHHHHHHHhc
Q 002846 470 AGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 470 ~G~~d~A~~ll~~M~~~ 486 (874)
.|..+++...+.++.+-
T Consensus 288 ~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 288 LLYEKETLQYFSTLKAV 304 (331)
T ss_dssp TTTHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHh
Confidence 45566777777777654
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=78.74 E-value=5.5 Score=33.34 Aligned_cols=56 Identities=16% Similarity=0.230 Sum_probs=39.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 002846 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEA-SLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (874)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~-tyn~LI~~~~~~G~~d~A~~l~~~M~~~ 416 (874)
..+.+.|++++|.+.|++..... +-+.. .|..+-.+|...|++++|...|++..+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34567788888888888777643 22445 7777777778888888888888777654
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=73.58 E-value=9 Score=31.93 Aligned_cols=53 Identities=19% Similarity=0.210 Sum_probs=26.3
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCC-cc-cHHHHHHHHHhCCChhHHHHHHHHHHH
Q 002846 396 MAMSMGDGDMAFDMVKRMKSLGINPR-LR-SYGPALSVFCNNGDVDKACSVEEHMLE 450 (874)
Q Consensus 396 ~~~~~G~~d~A~~l~~~M~~~Gi~Pd-~~-tYn~LI~a~~k~G~~~~A~~l~~eM~~ 450 (874)
.+...|++++|...|++..+. .|+ .. .|..+-..|...|+.++|.+.|+...+
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444555555555555555443 222 22 344444445555555555555555544
No 216
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=72.79 E-value=31 Score=32.53 Aligned_cols=62 Identities=15% Similarity=0.024 Sum_probs=34.9
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI 418 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi 418 (874)
+..++.+...|+-+.-.++..++.. +-+|+....-.+..+|.+.|+..+|.+++.+.-+.|+
T Consensus 95 d~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 95 NKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 5555566666666666666655432 2345555555666666666666666666665555554
No 217
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=72.06 E-value=15 Score=36.31 Aligned_cols=31 Identities=23% Similarity=0.310 Sum_probs=23.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 002846 196 VELDMCSKRGDVMGAIRLYDKAQREGIKLGQ 226 (874)
Q Consensus 196 ~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~ 226 (874)
+.|...++.|+.+.+..+++.+.+.|..++.
T Consensus 11 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~ 41 (241)
T 1k1a_A 11 TPLHIAVVQGNLPAVHRLVNLFQQGGRELDI 41 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHTTCCSCC
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Confidence 4566778889988888888877777766553
No 218
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=70.20 E-value=7.5 Score=37.44 Aligned_cols=95 Identities=13% Similarity=0.159 Sum_probs=58.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh----------hHHHHHHHHHHHCCCCCC-cccHHHHH
Q 002846 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDG----------DMAFDMVKRMKSLGINPR-LRSYGPAL 429 (874)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~----------d~A~~l~~~M~~~Gi~Pd-~~tYn~LI 429 (874)
...+.+.+++|...++.-.+.. +-+...|+.+=.++...+++ ++|+..|++..+. .|+ ...|..+=
T Consensus 11 ~~~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG 87 (158)
T 1zu2_A 11 EFDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIG 87 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHH
Confidence 4556778889999998887754 34677777777777777664 4677777666554 343 34555555
Q ss_pred HHHHhCC-----------ChhHHHHHHHHHHHcCCCCCHHHH
Q 002846 430 SVFCNNG-----------DVDKACSVEEHMLEHGVYPEEPEL 460 (874)
Q Consensus 430 ~a~~k~G-----------~~~~A~~l~~eM~~~Gv~Pd~~ty 460 (874)
.+|...| ++++|.+.|+...+. .|+...|
T Consensus 88 ~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y 127 (158)
T 1zu2_A 88 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHY 127 (158)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHH
Confidence 5555543 555555555555542 2544444
No 219
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=67.69 E-value=48 Score=32.39 Aligned_cols=77 Identities=14% Similarity=0.085 Sum_probs=61.4
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhC
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~ 435 (874)
..|=+.....|+++-|.+.|..... |..|.-.|...|+.+.-..+-+.-...|- ||.....+.-.
T Consensus 38 k~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla~iA~~~g~------~n~af~~~l~l 102 (177)
T 3mkq_B 38 ERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQNIAQTRED------FGSMLLNTFYN 102 (177)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHHHHHHHTTC------HHHHHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHHHHHHHCcc------HHHHHHHHHHc
Confidence 7788888899999999999988663 56677778888998887776665555553 67788888889
Q ss_pred CChhHHHHHHHH
Q 002846 436 GDVDKACSVEEH 447 (874)
Q Consensus 436 G~~~~A~~l~~e 447 (874)
|+++++.++|.+
T Consensus 103 Gdv~~~i~lL~~ 114 (177)
T 3mkq_B 103 NSTKERSSIFAE 114 (177)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999999998855
No 220
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=67.00 E-value=41 Score=33.66 Aligned_cols=113 Identities=12% Similarity=0.065 Sum_probs=60.3
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCccc--HHHHHH
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN---EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS--YGPALS 430 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd---~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~t--Yn~LI~ 430 (874)
.+.+...+..|..+-+..+++. .|..++ ..-.+.| ...+..|+.....++++.+.+.|..++... -.+.|.
T Consensus 149 ~t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~l-~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~ 224 (285)
T 1wdy_A 149 ATALMDAAEKGHVEVLKILLDE---MGADVNACDNMGRNAL-IHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLI 224 (285)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHT---SCCCTTCCCTTSCCHH-HHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHH
T ss_pred CcHHHHHHHcCCHHHHHHHHHh---cCCCCCccCCCCCCHH-HHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHH
Confidence 4556666777876544444432 154433 2223333 344556666666778888888887776543 234666
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCCchH
Q 002846 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPEL--EALLRVSVEAGKGDR 475 (874)
Q Consensus 431 a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty--~~LI~~~~~~G~~d~ 475 (874)
..++.|+.+-+..+++. .|..++.... .+-+...++.|..+-
T Consensus 225 ~A~~~~~~~~v~~Ll~~---~g~~~~~~~~~g~t~l~~A~~~~~~~i 268 (285)
T 1wdy_A 225 LAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLLAVELKLKKI 268 (285)
T ss_dssp HHHHTTCHHHHHHHHHS---SSCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHhc---cCCCccccCCCCCcHHHHHHHcCcHHH
Confidence 67777877554444431 4544432211 123344455565443
No 221
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=64.30 E-value=98 Score=29.24 Aligned_cols=118 Identities=15% Similarity=0.128 Sum_probs=78.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC---------------C--CCCCcccHHH
Q 002846 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL---------------G--INPRLRSYGP 427 (874)
Q Consensus 365 ~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~---------------G--i~Pd~~tYn~ 427 (874)
.|.++++.++..+..... +..-||-+|--....-+-+-.+++++.+-+. + ..-+...++.
T Consensus 20 dG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~~se~vd~ 96 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEHVNK 96 (172)
T ss_dssp TTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHHHHH
T ss_pred hhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcchHHHHHH
Confidence 467888999998887653 4455555555555555555555555543221 0 1123445566
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 428 LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
.|+.+...|.-++-.+++.++.. +-.|+....-.+-.+|.+-|+..+|.+++.+.-++
T Consensus 97 ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 97 ALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 77777778888888888777533 44677788888888899999988998888887777
No 222
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=63.96 E-value=1e+02 Score=35.59 Aligned_cols=132 Identities=5% Similarity=-0.039 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCC-ChhHHHHH
Q 002846 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG--DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG-DVDKACSV 444 (874)
Q Consensus 368 ~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G--~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G-~~~~A~~l 444 (874)
++++++.++.+.... +-+..+|+.---.+.+.| ++++|++.+++|.+... -+...|+.--..+.+.| ..+++.+.
T Consensus 89 ~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHH
Confidence 899999999998764 447788888888888888 67999999999998732 34556666556666778 88999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhc--------------CCchHHHHHHHHHHhcCCCCCh-hHHHHHHHHHhc
Q 002846 445 EEHMLEHGVYPEEPELEALLRVSVEA--------------GKGDRVYYLLHKLRTSVRKVSP-STADVIAKWFNS 504 (874)
Q Consensus 445 ~~eM~~~Gv~Pd~~ty~~LI~~~~~~--------------G~~d~A~~ll~~M~~~~~~~sp-~T~~~I~~~~~s 504 (874)
++.+.+.. .-|...|+-.-..+.+. +.++++++++++.... .|.- +.|.-....+..
T Consensus 167 ~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~ 238 (567)
T 1dce_A 167 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGR 238 (567)
T ss_dssp HHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSC
T ss_pred HHHHHHHC-CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhc
Confidence 99988754 23677787766666552 4568888888887765 4433 366655555544
No 223
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=63.05 E-value=33 Score=33.64 Aligned_cols=29 Identities=7% Similarity=-0.134 Sum_probs=22.6
Q ss_pred hhhcCChHHHHHHHHHHHHcCCCCCeeee
Q 002846 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMK 322 (874)
Q Consensus 294 ~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty 322 (874)
-+..|+.+.+..+++.+...|..++....
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~ 44 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGGRELDIYNN 44 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCCSCCCCT
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCcccc
Confidence 47788999888888888888877766543
No 224
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=61.65 E-value=22 Score=39.09 Aligned_cols=74 Identities=14% Similarity=0.037 Sum_probs=59.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHH
Q 002846 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELE 461 (874)
Q Consensus 384 ~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~ 461 (874)
..+..+|.++.-.+...|++++|...+++....+ |+...|..+=..+.-.|+.++|.+.|++.... .|...||.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 5678888888887888899999999999998875 77666655556677889999999999887774 48887764
No 225
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=60.95 E-value=22 Score=39.03 Aligned_cols=57 Identities=9% Similarity=0.078 Sum_probs=30.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCChhHHHHHHHHH
Q 002846 391 TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (874)
Q Consensus 391 n~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~~~~A~~l~~eM 448 (874)
..++..+...|+.++|...+..+... -.-+...|-.+|.+|.+.|+..+|.+.|+.+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33455555566666666555555433 1224445555566666666666665555554
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=60.14 E-value=47 Score=31.64 Aligned_cols=47 Identities=2% Similarity=-0.073 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHC
Q 002846 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG---DGDMAFDMVKRMKSL 416 (874)
Q Consensus 369 ~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G---~~d~A~~l~~~M~~~ 416 (874)
..+.+-|.+....|. ++..+.-.+--++++.. +++++..+|++..+.
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~ 64 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK 64 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 344445544444443 44444444455555555 444565555555544
No 227
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=59.86 E-value=9 Score=38.66 Aligned_cols=32 Identities=19% Similarity=-0.019 Sum_probs=23.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 002846 196 VELDMCSKRGDVMGAIRLYDKAQREGIKLGQY 227 (874)
Q Consensus 196 ~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~ 227 (874)
..|...++.|+.+....+++.+.+.|..++..
T Consensus 7 ~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~ 38 (260)
T 3jxi_A 7 PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDE 38 (260)
T ss_dssp HHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSG
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCcchh
Confidence 45566678888888888888877777666643
No 228
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=58.57 E-value=49 Score=36.26 Aligned_cols=79 Identities=9% Similarity=0.024 Sum_probs=62.8
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHh-----cCCCCChhHHHHHHH
Q 002846 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT-----SVRKVSPSTADVIAK 500 (874)
Q Consensus 426 n~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~-----~~~~~sp~T~~~I~~ 500 (874)
..++..+...|+.++|...+..+.... ..++..|..||.+|.+.|+..+|.+.|+.++. -+..|+|.+-.....
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~ 253 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNER 253 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 447778889999999999888887643 34888999999999999999999999988755 366677777666666
Q ss_pred HHhcc
Q 002846 501 WFNSK 505 (874)
Q Consensus 501 ~~~s~ 505 (874)
.....
T Consensus 254 il~~~ 258 (388)
T 2ff4_A 254 ILRQQ 258 (388)
T ss_dssp HHTTC
T ss_pred HHcCC
Confidence 55543
No 229
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=57.43 E-value=2e+02 Score=30.67 Aligned_cols=218 Identities=9% Similarity=-0.023 Sum_probs=130.7
Q ss_pred ChhHHHHHHHHHhhCCCCCCCCCCCCH-HHHHH---HHHHHHHcC-------CHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 002846 165 NDSGQYKVRGITDEKGSKKSKKDRSEQ-FQLRV---ELDMCSKRG-------DVMGAIRLYDKAQREGIKLGQYHYNVLL 233 (874)
Q Consensus 165 ~~~~A~~vf~eM~~~g~k~~~g~~Pd~-~tyn~---LI~a~~k~G-------~~~~Al~lf~~M~~~Gi~pd~~tyn~LL 233 (874)
..++|+.+++.+... .|+- ..||. +|..+.+.. .+++++.+++.+.... +-+..+|+.--
T Consensus 45 ~s~eaL~~t~~~L~~--------nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~ 115 (331)
T 3dss_A 45 LDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRC 115 (331)
T ss_dssp CSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 345799999998542 3332 33432 333443321 2688999999998653 23566777666
Q ss_pred HHHHhcccCCCcccCCC--CHHHHHHHHhhcccCchhhhhcCCCCchhhhHhhhcCcccChhhhhcCC-hHHHHHHHHHH
Q 002846 234 YLCSSAAVGVVKPAKSG--SGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYR-FDDLDSTFNEK 310 (874)
Q Consensus 234 ~a~~~~~~~~~~~~k~G--~~~~A~~vf~v~~~~s~em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~-~e~A~~lf~eM 310 (874)
.++. +.| .+++++..++ .+.+. +..|...|+----. +...|. ++++++.++++
T Consensus 116 wlL~----------~l~~~~~~~EL~~~~-------k~l~~-dprNy~AW~~R~~v------l~~l~~~~~eel~~~~~~ 171 (331)
T 3dss_A 116 WLLS----------RLPEPNWARELELCA-------RFLEA-DERNFHCWDYRRFV------AAQAAVAPAEELAFTDSL 171 (331)
T ss_dssp HHHH----------HCSSCCHHHHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHHTTCCHHHHHHHHHHH
T ss_pred HHHh----------ccCcccHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHhCcCHHHHHHHHHHH
Confidence 5665 334 4788888885 55544 45566667666555 566677 58999999998
Q ss_pred HHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHH-----------hcCCHHHHHHHHHHHH
Q 002846 311 ENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDA-----------KKYAFQRGFEIYEKMC 379 (874)
Q Consensus 311 ~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~-----------k~g~~~~A~~lf~~M~ 379 (874)
...... |...| ... ..++..+. ..+.++++++.++...
T Consensus 172 I~~~p~-N~SAW-------------------------~~R-----~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai 220 (331)
T 3dss_A 172 ITRNFS-NYSSW-------------------------HYR-----SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAF 220 (331)
T ss_dssp HHHCSC-CHHHH-------------------------HHH-----HHHHHHHSCCC------CCCHHHHHHHHHHHHHHH
T ss_pred HHHCCC-CHHHH-------------------------HHH-----HHHHHHhhhccccccccccchHHHHHHHHHHHHHH
Confidence 876321 11111 000 22222221 1145788999998887
Q ss_pred HCCCCCCHHHHHHHHHHHHhc-----------CChhHHHHHHHHHHHCCCCCCcccHHHHHH-----HHHhCCChhHHHH
Q 002846 380 LDEVPMNEASLTAVGRMAMSM-----------GDGDMAFDMVKRMKSLGINPRLRSYGPALS-----VFCNNGDVDKACS 443 (874)
Q Consensus 380 ~~Gv~Pd~~tyn~LI~~~~~~-----------G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~-----a~~k~G~~~~A~~ 443 (874)
... +-|...|+-+--.+.+. +.++++++.++++.+. .||. .|+.+-. +....|..+++..
T Consensus 221 ~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~ 296 (331)
T 3dss_A 221 FTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQ 296 (331)
T ss_dssp HHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHH
Confidence 654 44788887665555554 4578899999998865 5775 4442111 1223455566666
Q ss_pred HHHHHHH
Q 002846 444 VEEHMLE 450 (874)
Q Consensus 444 l~~eM~~ 450 (874)
.++.+.+
T Consensus 297 ~l~~l~~ 303 (331)
T 3dss_A 297 YFSTLKA 303 (331)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666654
No 230
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=56.49 E-value=63 Score=30.69 Aligned_cols=82 Identities=12% Similarity=-0.015 Sum_probs=58.9
Q ss_pred hhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCC---ChhHHHHHHHHHHHcCCCC-C-HHHHHHHHHHHHhcCCchHHH
Q 002846 403 GDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG---DVDKACSVEEHMLEHGVYP-E-EPELEALLRVSVEAGKGDRVY 477 (874)
Q Consensus 403 ~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G---~~~~A~~l~~eM~~~Gv~P-d-~~ty~~LI~~~~~~G~~d~A~ 477 (874)
+..+.+-|.+....|. ++..+---+--++++.. +++++..++++..+.. .| + ...+-.|=-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 4456666666666655 56555555666788887 7779999999998865 34 2 233333444678999999999
Q ss_pred HHHHHHHhc
Q 002846 478 YLLHKLRTS 486 (874)
Q Consensus 478 ~ll~~M~~~ 486 (874)
+.++.+.+.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999999987
No 231
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=55.81 E-value=46 Score=32.41 Aligned_cols=20 Identities=5% Similarity=-0.203 Sum_probs=13.7
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 002846 197 ELDMCSKRGDVMGAIRLYDK 216 (874)
Q Consensus 197 LI~a~~k~G~~~~Al~lf~~ 216 (874)
.|...++.|+++....+++.
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHh
Confidence 46666777777777766655
No 232
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=55.59 E-value=48 Score=28.24 Aligned_cols=64 Identities=11% Similarity=0.023 Sum_probs=30.4
Q ss_pred CHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHCCCCCC-cccHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 002846 386 NEASLTAVGRMAMSMGD---GDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (874)
Q Consensus 386 d~~tyn~LI~~~~~~G~---~d~A~~l~~~M~~~Gi~Pd-~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~ 451 (874)
|...+..+..++...++ .++|..+|++..+. .|+ ......+=..+.+.|++++|...|+.+.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34444444444443333 45556555555443 233 223333334444555555555555555543
No 233
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=53.11 E-value=44 Score=28.67 Aligned_cols=25 Identities=12% Similarity=0.016 Sum_probs=13.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 002846 390 LTAVGRMAMSMGDGDMAFDMVKRMK 414 (874)
Q Consensus 390 yn~LI~~~~~~G~~d~A~~l~~~M~ 414 (874)
+-.|-..+...|+++.|...|++..
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al 32 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQAL 32 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHH
Confidence 3344455555555555555555443
No 234
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=52.63 E-value=77 Score=38.09 Aligned_cols=127 Identities=10% Similarity=0.074 Sum_probs=79.9
Q ss_pred chHHHHHHh----cCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHC------CCCCCcc
Q 002846 356 EIRLSEDAK----KYA-FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD-GDMAFDMVKRMKSL------GINPRLR 423 (874)
Q Consensus 356 n~lI~~~~k----~g~-~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~-~d~A~~l~~~M~~~------Gi~Pd~~ 423 (874)
|-|++++.+ .++ .+.|.++|+++....-.-+.....++|..+.+.++ --+|.+++.+..+. .+.+...
T Consensus 248 N~L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~ 327 (754)
T 4gns_B 248 NYLMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDA 327 (754)
T ss_dssp SHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccc
Confidence 777666654 334 68899999999886422222223344444444332 22455555443321 2222221
Q ss_pred cH-------HHHH----HHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 002846 424 SY-------GPAL----SVFCNNGDVDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLR 484 (874)
Q Consensus 424 tY-------n~LI----~a~~k~G~~~~A~~l~~eM~~~Gv~Pd-~~ty~~LI~~~~~~G~~d~A~~ll~~M~ 484 (874)
.. ..|| ..|...|+.+.|+++-+.-.. +.|+ -.+|..|..+|...|+++.|+-.++.+.
T Consensus 328 ~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 328 DSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11 1133 234468999999999988776 3465 6899999999999999999999999874
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=49.63 E-value=1.4e+02 Score=28.46 Aligned_cols=108 Identities=10% Similarity=0.004 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHHhcCCh------hHHHHHHHHHHHCCCCCCc----ccHHHHHHHHH---hCCChhHHHHHHHHHHHcC
Q 002846 386 NEASLTAVGRMAMSMGDG------DMAFDMVKRMKSLGINPRL----RSYGPALSVFC---NNGDVDKACSVEEHMLEHG 452 (874)
Q Consensus 386 d~~tyn~LI~~~~~~G~~------d~A~~l~~~M~~~Gi~Pd~----~tYn~LI~a~~---k~G~~~~A~~l~~eM~~~G 452 (874)
|.-+|=..|+..-+.|++ +...++|++.... ++|+. +.|--|.--|+ ..+++++|.++|+.+...+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 455666666666666777 6777777766553 55642 22222222222 3489999999999997653
Q ss_pred CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCCCChh-HHHH
Q 002846 453 VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS-TADV 497 (874)
Q Consensus 453 v~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~~sp~-T~~~ 497 (874)
-.- ...|-.--..=.+.|+++.|.++|..-... ++.|. ..++
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~--~~k~~~~le~ 133 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVER--GAVPLEMLEI 133 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCBCHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CCCcHHHHHH
Confidence 222 666666666668899999999999999887 77665 4444
No 236
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=47.82 E-value=84 Score=27.97 Aligned_cols=62 Identities=11% Similarity=0.020 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHH
Q 002846 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430 (874)
Q Consensus 368 ~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~ 430 (874)
.=+..+-++.+....+.|+..+..+.+++|-+..++..|.++|+-++.. +.+...+|..+|.
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 3355666666666778888888888888888888888888888877654 3344445665554
No 237
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=45.59 E-value=90 Score=33.09 Aligned_cols=105 Identities=11% Similarity=0.090 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc-----CChhHHHHHHHHHHHCCCCC--CcccHHHHHHHHHhC-C
Q 002846 368 FQRGFEIYEKMCLDEVPMN---EASLTAVGRMAMSM-----GDGDMAFDMVKRMKSLGINP--RLRSYGPALSVFCNN-G 436 (874)
Q Consensus 368 ~~~A~~lf~~M~~~Gv~Pd---~~tyn~LI~~~~~~-----G~~d~A~~l~~~M~~~Gi~P--d~~tYn~LI~a~~k~-G 436 (874)
+..|..++++..+- -|+ -..|+.|-..|.+. |+.++|.+.|++-.+. .| +..++...-..+|.. |
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcC
Confidence 45566666665553 355 56899999999984 8999999999988775 45 367777777888884 8
Q ss_pred ChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 002846 437 DVDKACSVEEHMLEHGVY--PEEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (874)
Q Consensus 437 ~~~~A~~l~~eM~~~Gv~--Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~ 484 (874)
+.++|.+.+++-...... |+....+.+ .-.+|..++.++.
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~lan~~--------~q~eA~~LL~~~~ 296 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNKLLVIL--------SQKRARWLKAHVQ 296 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCHHHHHH--------HHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCChhHHHHH--------HHHHHHHHHHHhH
Confidence 899999999998887655 664443333 2345555555443
No 238
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=44.96 E-value=86 Score=32.09 Aligned_cols=95 Identities=12% Similarity=0.108 Sum_probs=52.1
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHh
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN 434 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~P-d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k 434 (874)
.+.+...+..|..+ +++.+.+.|..+ +...-.+.+...+..|+.+-+.-+++.-..... .|..-+++.|...+.
T Consensus 130 ~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~-~~~~g~t~~L~~A~~ 204 (285)
T 3kea_A 130 KTSFYHAVMLNDVS----IVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNT-NNSLLFIPDIKLAID 204 (285)
T ss_dssp GSHHHHHHHTTCHH----HHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCT-TCCCBCCTTHHHHHH
T ss_pred CCHHHHHHHcCCHH----HHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCc-ccCCCCChHHHHHHH
Confidence 35555666677754 444445555433 221234455566778888777666655333222 233333444555666
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHHH
Q 002846 435 NGDVDKACSVEEHMLEHGVYPEEPE 459 (874)
Q Consensus 435 ~G~~~~A~~l~~eM~~~Gv~Pd~~t 459 (874)
.|+. ++.+.+.+.|..++...
T Consensus 205 ~~~~----~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 205 NKDI----EMLQALFKYDINIYSAN 225 (285)
T ss_dssp HTCH----HHHHHHTTSCBCSTTTT
T ss_pred cCCH----HHHHHHHHcCCCCCCCC
Confidence 6765 45555667787776654
No 239
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=42.78 E-value=3.2e+02 Score=34.33 Aligned_cols=143 Identities=11% Similarity=0.005 Sum_probs=93.8
Q ss_pred hHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---------------
Q 002846 357 IRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR--------------- 421 (874)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd--------------- 421 (874)
.++..+.+.+..+-|.++..-.. -+...-=.+-++|...|++++|.++|.+.. .|+..+
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa-~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHh-hhhcccchhhhhhcccccccc
Confidence 34555666666666666544322 233333345567778999999999997531 122111
Q ss_pred --------cccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCchHHHHHHHHHHhcCCC
Q 002846 422 --------LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE----PELEALLRVSVEAGKGDRVYYLLHKLRTSVRK 489 (874)
Q Consensus 422 --------~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~----~ty~~LI~~~~~~G~~d~A~~ll~~M~~~~~~ 489 (874)
..=|..++.-|-+.+..+.+.++-..-.+..-.-+. ..|..+++++...|++++|+..+-.+... .
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~--~ 968 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT--P 968 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS--S
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH--H
Confidence 112677888888899998888776655543211111 25888999999999999999999999877 4
Q ss_pred CChhHH-HHHHHHHhcchH
Q 002846 490 VSPSTA-DVIAKWFNSKEA 507 (874)
Q Consensus 490 ~sp~T~-~~I~~~~~s~~~ 507 (874)
...+.. ..|...|+.+..
T Consensus 969 ~r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 969 LKKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp SCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHhCCCh
Confidence 455544 347888877654
No 240
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=41.43 E-value=2.4e+02 Score=28.88 Aligned_cols=21 Identities=19% Similarity=0.172 Sum_probs=12.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q 002846 196 VELDMCSKRGDVMGAIRLYDK 216 (874)
Q Consensus 196 ~LI~a~~k~G~~~~Al~lf~~ 216 (874)
..|...++.|+.+....++..
T Consensus 26 ~~L~~A~~~g~~~~v~~ll~~ 46 (351)
T 3utm_A 26 DELLEAARSGNEEKLMALLTP 46 (351)
T ss_dssp HHHHHHHHHTCHHHHHHHCCT
T ss_pred hhHHHHHHcCCHHHHHHHHHh
Confidence 344455667777776666653
No 241
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=40.67 E-value=1.3e+02 Score=29.72 Aligned_cols=167 Identities=14% Similarity=-0.003 Sum_probs=87.0
Q ss_pred hhhcCChHHHHHHHHHHHHcCCCCCeeeec----------cccHHHHHHhhhcC-CCCcccccccccccCCccchHHHHH
Q 002846 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKL----------NSQLLDGRSNLERG-PDDQSRKKDWSIDNQDADEIRLSED 362 (874)
Q Consensus 294 ~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~----------~g~~~eA~~l~~~m-~pd~~ty~~w~i~~~~~~n~lI~~~ 362 (874)
-+..|+.+ +++.+.+.|..|+..... .|..+-...+++.. .++.... ...+.+...
T Consensus 46 A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~---------~g~t~L~~A 112 (285)
T 1wdy_A 46 AVQMSRED----IVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDF---------YGFTAFMEA 112 (285)
T ss_dssp HHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCT---------TCCBHHHHH
T ss_pred HHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCc---------ccCCHHHHH
Confidence 35566654 444555678776654332 45554444444443 2222211 113455556
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHH------------HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcc---cHHH
Q 002846 363 AKKYAFQRGFEIYEKMCLDEVPMNEAS------------LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR---SYGP 427 (874)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~Gv~Pd~~t------------yn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~---tYn~ 427 (874)
+..|..+ +++.+.+.|..++... -.+.+...+..|+.+.+..+++. .|..++.. -.+
T Consensus 113 ~~~~~~~----~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t- 184 (285)
T 1wdy_A 113 AVYGKVK----ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE---MGADVNACDNMGRN- 184 (285)
T ss_dssp HHTTCHH----HHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHT---SCCCTTCCCTTSCC-
T ss_pred HHhCCHH----HHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHh---cCCCCCccCCCCCC-
Confidence 6777754 4455555665544220 11345555667776655444432 25544432 233
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCchHHHHHHH
Q 002846 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE--LEALLRVSVEAGKGDRVYYLLH 481 (874)
Q Consensus 428 LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~t--y~~LI~~~~~~G~~d~A~~ll~ 481 (874)
.+...+..|......++.+.+.+.|..++... -.+.+...++.|..+-+..+++
T Consensus 185 ~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 185 ALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 34445556666666777778888887665432 1234455566777665555554
No 242
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=39.18 E-value=1.6e+02 Score=24.98 Aligned_cols=60 Identities=18% Similarity=0.089 Sum_probs=48.8
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 427 PALSVFCNNGDVDKACSVEEHMLEH------GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 427 ~LI~a~~k~G~~~~A~~l~~eM~~~------Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
.|=..+.+.|++..|...|+...+. .-.+....|..|-.++.+.|++++|..++++....
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 4556677889999999999887653 12345678899999999999999999999999875
No 243
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=36.92 E-value=96 Score=29.90 Aligned_cols=22 Identities=9% Similarity=-0.064 Sum_probs=12.3
Q ss_pred hhcCChHHHHHHHHHHHHcCCCCCee
Q 002846 295 NSSYRFDDLDSTFNEKENLGQFSNGH 320 (874)
Q Consensus 295 ~~~g~~e~A~~lf~eM~~~Gi~Pd~~ 320 (874)
++.|+++.. +.+.+.|..++..
T Consensus 17 ~~~g~~~~~----~~Ll~~g~~~~~~ 38 (240)
T 3eu9_A 17 TQYGIYERC----RELVEAGYDVRQP 38 (240)
T ss_dssp HHTTCHHHH----HHHHHTTCCTTCC
T ss_pred HHcCChHHH----HHHHHcCCCcCCC
Confidence 556665544 4455577665544
No 244
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=36.81 E-value=1.4e+02 Score=28.06 Aligned_cols=60 Identities=12% Similarity=0.048 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHH
Q 002846 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430 (874)
Q Consensus 370 ~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~ 430 (874)
+..+-++.+....+.|+.....+.+++|-+-.|+..|..+|+-.+.. +.+...+|..+|.
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 55555666666778888888888888888888888888888877654 4445556766554
No 245
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=36.70 E-value=72 Score=30.45 Aligned_cols=95 Identities=6% Similarity=-0.116 Sum_probs=67.3
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHhCCC----------hhHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 002846 398 MSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD----------VDKACSVEEHMLEHGVYP-EEPELEALLRV 466 (874)
Q Consensus 398 ~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~k~G~----------~~~A~~l~~eM~~~Gv~P-d~~ty~~LI~~ 466 (874)
.+.+.+++|...++...+.. .-+...|+.+=.++...++ +++|...|++..+.. | +...|..|=.+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld--P~~~~A~~~LG~a 89 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC--cCcHHHHHHHHHH
Confidence 45567888999998877653 2245566555556666655 459999999988743 6 45678888888
Q ss_pred HHhc-----------CCchHHHHHHHHHHhcCCCCChhHHHH
Q 002846 467 SVEA-----------GKGDRVYYLLHKLRTSVRKVSPSTADV 497 (874)
Q Consensus 467 ~~~~-----------G~~d~A~~ll~~M~~~~~~~sp~T~~~ 497 (874)
|... |++++|...|++..+. .|.-..|.-
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~ 129 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLK 129 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 8766 4899999999999887 555445544
No 246
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=36.38 E-value=1.9e+02 Score=24.29 Aligned_cols=64 Identities=11% Similarity=0.003 Sum_probs=46.0
Q ss_pred CcccHHHHHHHHHhCCC---hhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 421 RLRSYGPALSVFCNNGD---VDKACSVEEHMLEHGVYPEE-PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 421 d~~tYn~LI~a~~k~G~---~~~A~~l~~eM~~~Gv~Pd~-~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
|...+..+-.++...++ .++|..++++..+.. |+. .....|=..+.+.|++++|...|.++...
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d--p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE--PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 33444444455543433 799999999988744 644 45555556678999999999999999987
No 247
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=35.21 E-value=2.9e+02 Score=31.60 Aligned_cols=129 Identities=7% Similarity=-0.040 Sum_probs=92.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 002846 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD----------GDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433 (874)
Q Consensus 364 k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~----------~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a~~ 433 (874)
....-++|+++++++.... +-+..+|+.-=..+...|+ ++++++.++.+.+..- =+...|+.---.+.
T Consensus 41 ~~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~ 118 (567)
T 1dce_A 41 AGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLS 118 (567)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 3345578899999998764 2345667765555556666 8999999999987632 23456666556666
Q ss_pred hCC--ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHhcCCCCChh-HHHH
Q 002846 434 NNG--DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAG-KGDRVYYLLHKLRTSVRKVSPS-TADV 497 (874)
Q Consensus 434 k~G--~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G-~~d~A~~ll~~M~~~~~~~sp~-T~~~ 497 (874)
+.| ++++|.++++.|.+.. .-|...|+.---++.+.| ..+++++.+.++.+. .|+-. .|.-
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~--~p~n~saW~~ 183 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHY 183 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--TCCCHHHHHH
T ss_pred HcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH--CCCCccHHHH
Confidence 778 6799999999999865 246777877766777778 789999999988876 44433 4433
No 248
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=34.13 E-value=2.7e+02 Score=25.84 Aligned_cols=114 Identities=9% Similarity=-0.054 Sum_probs=54.7
Q ss_pred hHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCC---cccHHHHH
Q 002846 357 IRLSEDAKKYAFQRGFEIYEKMCLDEVPM---NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-INPR---LRSYGPAL 429 (874)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~Gv~P---d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~G-i~Pd---~~tYn~LI 429 (874)
+.+...+..|..+-+..+++. .+..+ |..-. +.+...+..|+.+.+..+++ .| ..++ ..-+++|.
T Consensus 74 t~l~~A~~~~~~~~~~~Ll~~---~~~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~~g~t~L~ 145 (201)
T 3hra_A 74 SPYLYAGAQGRTEILAYMLKH---ATPDLNKHNRYGG-NALIPAAEKGHIDNVKLLLE----DGREDIDFQNDFGYTALI 145 (201)
T ss_dssp CHHHHHHHTTCHHHHHHHHHH---SCCCTTCCCTTSC-CSHHHHHHTTCHHHHHHHHH----HCCCCTTCCCTTSCCHHH
T ss_pred CHHHHHHHcCCHHHHHHHHhc---cCcccccccCCCC-cHHHHHHHcCCHHHHHHHHH----cCCCCcCCCCCCCCCHHH
Confidence 444555566776555544433 22222 11111 22444566677665554443 33 3333 33334444
Q ss_pred HHHHhCCC-hhHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCCchHHHHH
Q 002846 430 SVFCNNGD-VDKACSVEEHMLEHGVYPEEPELE--ALLRVSVEAGKGDRVYYL 479 (874)
Q Consensus 430 ~a~~k~G~-~~~A~~l~~eM~~~Gv~Pd~~ty~--~LI~~~~~~G~~d~A~~l 479 (874)
. .+..|+ ...-.++.+.+.+.|..++..... +-+...++.|..+-+..+
T Consensus 146 ~-A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L 197 (201)
T 3hra_A 146 E-AVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197 (201)
T ss_dssp H-HHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred H-HHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHH
Confidence 4 444444 333456677777777666543321 334455566665544444
No 249
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=33.78 E-value=3.1e+02 Score=27.59 Aligned_cols=77 Identities=21% Similarity=0.245 Sum_probs=37.4
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCcccH--HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcC
Q 002846 396 MAMSMGDGDMAFDMVKRMKSLGINPRLRSY--GPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL--EALLRVSVEAG 471 (874)
Q Consensus 396 ~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tY--n~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty--~~LI~~~~~~G 471 (874)
..+..+..+ +++.+.+.|..|+.... .+.|...|..|+.+-+.. +.+.|..++.... .+.|...+..|
T Consensus 125 ~a~~~~~~~----~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~----Ll~~gadvn~~~~~g~t~Lh~A~~~g 196 (269)
T 4b93_B 125 LACQQGHFQ----VVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVAL----LLQHGASINASNNKGNTALHEAVIEK 196 (269)
T ss_dssp HHHHHTCHH----HHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHH----HHHTTCCTTCBCTTSCBHHHHHHHTT
T ss_pred cccccChHH----HHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHH----HHHCCCCCCccccCCCcHHHHHHHcC
Confidence 334445544 34444556666654432 123444566777654443 3445655543221 23344445667
Q ss_pred CchHHHHHH
Q 002846 472 KGDRVYYLL 480 (874)
Q Consensus 472 ~~d~A~~ll 480 (874)
..+-+.-|+
T Consensus 197 ~~~~v~~Ll 205 (269)
T 4b93_B 197 HVFVVELLL 205 (269)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 765544444
No 250
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=32.43 E-value=85 Score=30.30 Aligned_cols=12 Identities=8% Similarity=0.019 Sum_probs=5.9
Q ss_pred HHHHHHHcCCHH
Q 002846 197 ELDMCSKRGDVM 208 (874)
Q Consensus 197 LI~a~~k~G~~~ 208 (874)
.|...++.|+.+
T Consensus 45 ~L~~A~~~~~~~ 56 (240)
T 3eu9_A 45 LLHWAAINNRID 56 (240)
T ss_dssp HHHHHHHTTCHH
T ss_pred HHHHHHHhCCHH
Confidence 344445555543
No 251
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=31.21 E-value=2.1e+02 Score=25.43 Aligned_cols=50 Identities=14% Similarity=0.122 Sum_probs=40.0
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 437 ~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
|.=++.+-++.+-...+.|+.....+.+++|-|..++.-|.++|+-++.+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34456666777777788888888888888888888888888888888776
No 252
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=30.97 E-value=1.2e+02 Score=27.89 Aligned_cols=88 Identities=8% Similarity=-0.003 Sum_probs=42.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH---HHHHHHHHHHCCCCC-Ccc--cHHHHHHHHH
Q 002846 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDM---AFDMVKRMKSLGINP-RLR--SYGPALSVFC 433 (874)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn~LI~~~~~~G~~d~---A~~l~~~M~~~Gi~P-d~~--tYn~LI~a~~ 433 (874)
+.......+..+.+-|.+....|. |+..+--.+.-++.+...... ++.++++....+ .| +.+ .|. |=-|+.
T Consensus 9 ~~~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~-LAvg~y 85 (126)
T 1nzn_A 9 NELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFY-LAVGNY 85 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHH-HHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHH-HHHHHH
Confidence 333333444455555555544443 444444445556666655544 666666665542 12 111 121 223444
Q ss_pred hCCChhHHHHHHHHHHH
Q 002846 434 NNGDVDKACSVEEHMLE 450 (874)
Q Consensus 434 k~G~~~~A~~l~~eM~~ 450 (874)
+.|++++|.+.++.+.+
T Consensus 86 klg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 86 RLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHH
Confidence 55555555555555544
No 253
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=29.28 E-value=1.9e+02 Score=29.39 Aligned_cols=89 Identities=10% Similarity=0.042 Sum_probs=43.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHHC--CCCC----CcccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 002846 394 GRMAMSMGDGDMAFDMVKRMKSL--GINP----RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVS 467 (874)
Q Consensus 394 I~~~~~~G~~d~A~~l~~~M~~~--Gi~P----d~~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~ 467 (874)
|+.+....++++|.+++++.++. ++++ ....-...|..-+....-.-+..+.+++.. .++.......+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Confidence 45555566666666666554422 2221 111222233333333333344444444422 34555556666667
Q ss_pred HhcCCchHHHHHHHHHHh
Q 002846 468 VEAGKGDRVYYLLHKLRT 485 (874)
Q Consensus 468 ~~~G~~d~A~~ll~~M~~ 485 (874)
.+-|+.++|.++|-+.+.
T Consensus 102 ~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHHHH
Confidence 777777777777766544
No 254
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=29.07 E-value=1e+02 Score=28.21 Aligned_cols=24 Identities=17% Similarity=0.124 Sum_probs=13.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 002846 390 LTAVGRMAMSMGDGDMAFDMVKRM 413 (874)
Q Consensus 390 yn~LI~~~~~~G~~d~A~~l~~~M 413 (874)
.+.+|.-|...|+.++|.+.++++
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh
Confidence 344555555566666666666555
No 255
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=28.75 E-value=2e+02 Score=27.65 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=11.9
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcC
Q 002846 428 ALSVFCNNGDVDKACSVEEHMLEHG 452 (874)
Q Consensus 428 LI~a~~k~G~~~~A~~l~~eM~~~G 452 (874)
.|...+..|+.+-+..+++.+.+.|
T Consensus 157 ~L~~A~~~~~~~~~~~i~~~Ll~~g 181 (232)
T 2rfa_A 157 VLHILILQPNKTFACQMYNLLLSYD 181 (232)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcC
Confidence 3444444555554444444444444
No 256
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=28.38 E-value=2.8e+02 Score=26.32 Aligned_cols=38 Identities=16% Similarity=0.057 Sum_probs=20.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHH
Q 002846 196 VELDMCSKRGDVMGAIRLYDKAQREGIKLGQY---HYNVLLYLCS 237 (874)
Q Consensus 196 ~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~---tyn~LL~a~~ 237 (874)
+.|...++.|+.+-+..+ .+.|..++.. -++.|..|+.
T Consensus 27 t~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~g~t~L~~A~~ 67 (223)
T 2f8y_A 27 TALHLAARYSRSDAAKRL----LEASADANIQDNMGRTPLHAAVS 67 (223)
T ss_dssp CHHHHHHHTTCHHHHHHH----HHTTCCTTCCCTTSCCHHHHHHH
T ss_pred chHHHHHHcCCHHHHHHH----HHcCCCCCCcCCCCCCHHHHHHH
Confidence 456666788886654444 4456655432 2344444443
No 257
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=27.90 E-value=1.9e+02 Score=31.23 Aligned_cols=194 Identities=14% Similarity=0.026 Sum_probs=89.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCchhhhhc
Q 002846 196 VELDMCSKRGDVMGAIRLYDKAQREGIKLGQY---HYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS 272 (874)
Q Consensus 196 ~LI~a~~k~G~~~~Al~lf~~M~~~Gi~pd~~---tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~em~~~ 272 (874)
+.|...+..|+++-+..++ +.|..|+.. ..+.|..|+. .|..+-+.-++. .
T Consensus 16 t~L~~Aa~~g~~~~v~~Ll----~~g~~~~~~~~~~~t~L~~A~~-----------~g~~~~v~~Ll~-----------~ 69 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKNLL----QRGASPNVSNVKVETPLHMAAR-----------AGHTEVAKYLLQ-----------N 69 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHH----HTTCCSCCSSSCCCCHHHHHHH-----------HTCHHHHHHHHH-----------H
T ss_pred CHHHHHHHCCCHHHHHHHH----HcCCCCCCCCCCCCCHHHHHHH-----------cCCHHHHHHHHh-----------C
Confidence 4566677788876555544 456666532 2234444443 456555554442 1
Q ss_pred CCCC----chhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeec----------cccHHHHHHhhhcC-
Q 002846 273 RDMD----NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL----------NSQLLDGRSNLERG- 337 (874)
Q Consensus 273 ~gi~----d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~----------~g~~~eA~~l~~~m- 337 (874)
|.. +...++.|.. -+..|..+-+ +.+.+.|..|+..... .|..+-...+++..
T Consensus 70 -g~~~~~~~~~g~t~L~~-------A~~~g~~~~v----~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~ 137 (437)
T 1n11_A 70 -KAKVNAKAKDDQTPLHC-------AARIGHTNMV----KLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEA 137 (437)
T ss_dssp -TCCSSCCCTTSCCHHHH-------HHHHTCHHHH----HHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred -CCCCCCCCCCCCCHHHH-------HHHCCCHHHH----HHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Confidence 221 2222333333 3556665544 3444557666654432 44555444454443
Q ss_pred CCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHHHH
Q 002846 338 PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEAS--LTAVGRMAMSMGDGDMAFDMVKRMKS 415 (874)
Q Consensus 338 ~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~t--yn~LI~~~~~~G~~d~A~~l~~~M~~ 415 (874)
.++.... ...+.+...++.|.++ +++.+.+.|..++... -.+.+...+..|+.+- ++.+.+
T Consensus 138 ~~~~~~~---------~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~ 200 (437)
T 1n11_A 138 SQACMTK---------KGFTPLHVAAKYGKVR----VAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDI----VKLLLP 200 (437)
T ss_dssp CSCCCCT---------TSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHH----HHHHGG
T ss_pred CCcCCCC---------CCCCHHHHHHHcCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHH----HHHHHh
Confidence 1111111 1134455556667654 3344444554443211 1123444455666543 334444
Q ss_pred CCCCCCcccH--HHHHHHHHhCCChhHHHHH
Q 002846 416 LGINPRLRSY--GPALSVFCNNGDVDKACSV 444 (874)
Q Consensus 416 ~Gi~Pd~~tY--n~LI~a~~k~G~~~~A~~l 444 (874)
.|..|+...+ .+.|...+..|+.+-+..+
T Consensus 201 ~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~L 231 (437)
T 1n11_A 201 RGGSPHSPAWNGYTPLHIAAKQNQVEVARSL 231 (437)
T ss_dssp GTCCSCCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence 5554444321 2344555666765444433
No 258
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=27.81 E-value=71 Score=32.16 Aligned_cols=183 Identities=14% Similarity=0.078 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------CHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccCch
Q 002846 195 RVELDMCSKRGDVMGAIRLYDKAQREGIKL-------GQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNST 267 (874)
Q Consensus 195 n~LI~a~~k~G~~~~Al~lf~~M~~~Gi~p-------d~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~s~ 267 (874)
.+.|...++.|+++.+..+++.....|... |..-++.|..|+.
T Consensus 14 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~------------------------------ 63 (273)
T 2pnn_A 14 RRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAML------------------------------ 63 (273)
T ss_dssp HHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHH------------------------------
T ss_pred chHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHH------------------------------
Q ss_pred hhhhcCCCCchhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHH-----------------cCCCCCeeeeccccHHHH
Q 002846 268 ELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKEN-----------------LGQFSNGHMKLNSQLLDG 330 (874)
Q Consensus 268 em~~~~gi~d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~-----------------~Gi~Pd~~ty~~g~~~eA 330 (874)
+.+.|..+-+..|++.-.. .|
T Consensus 64 --------------------------~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g---------------- 101 (273)
T 2pnn_A 64 --------------------------NLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKG---------------- 101 (273)
T ss_dssp --------------------------SCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTT----------------
T ss_pred --------------------------HHhcCChHHHHHHHHhhccccchhHHhhcccccccCCC----------------
Q ss_pred HHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH----------------HHHHH
Q 002846 331 RSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEAS----------------LTAVG 394 (874)
Q Consensus 331 ~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~t----------------yn~LI 394 (874)
.+.+...+..|. .++++.+.+.|..++... -.+.|
T Consensus 102 -------------------------~tpL~~A~~~g~----~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL 152 (273)
T 2pnn_A 102 -------------------------QTALHIAIERRN----MTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPL 152 (273)
T ss_dssp -------------------------CCHHHHHHHTTC----HHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHH
T ss_pred -------------------------CCHHHHHHHcCC----HHHHHHHHHCCCCcCccccccccccccccccccCCCCHH
Q ss_pred HHHHhcCChhHHHHHHHHHHH---CCCCCCcccHH--HHHHHHHhCCC-----hhHHHHHHHHHHHcCCCCC--------
Q 002846 395 RMAMSMGDGDMAFDMVKRMKS---LGINPRLRSYG--PALSVFCNNGD-----VDKACSVEEHMLEHGVYPE-------- 456 (874)
Q Consensus 395 ~~~~~~G~~d~A~~l~~~M~~---~Gi~Pd~~tYn--~LI~a~~k~G~-----~~~A~~l~~eM~~~Gv~Pd-------- 456 (874)
...+..|+. ++++.+.+ .|..++..... +.|...+..|+ .+...++.+.+.+.|..++
T Consensus 153 ~~A~~~g~~----~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~ 228 (273)
T 2pnn_A 153 SLAACTNQL----AIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEI 228 (273)
T ss_dssp HHHHHTTCH----HHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGC
T ss_pred HHHHHcCCH----HHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccc
Q ss_pred -HHHHHHHHHHHHhcCCchHHHHHHHH
Q 002846 457 -EPELEALLRVSVEAGKGDRVYYLLHK 482 (874)
Q Consensus 457 -~~ty~~LI~~~~~~G~~d~A~~ll~~ 482 (874)
...-.+-|...+..|..+-+..|++.
T Consensus 229 ~d~~g~TpL~~A~~~g~~~iv~~Ll~~ 255 (273)
T 2pnn_A 229 TNRKGLTPLALAASSGKIGVLAYILQR 255 (273)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHhChHHHHHHHHHC
No 259
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=27.48 E-value=3.5e+02 Score=24.48 Aligned_cols=60 Identities=12% Similarity=0.113 Sum_probs=42.5
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHhcCCCCChh-HHHHHHHHHhcch
Q 002846 446 EHMLEHGVYPEEPELEALLRVSVEAG-KGDRVYYLLHKLRTSVRKVSPS-TADVIAKWFNSKE 506 (874)
Q Consensus 446 ~eM~~~Gv~Pd~~ty~~LI~~~~~~G-~~d~A~~ll~~M~~~~~~~sp~-T~~~I~~~~~s~~ 506 (874)
+.|.+.|+.++..=. .++..+...+ ..-.|.++++.+++..-.+++. .|..|..+.+.|-
T Consensus 7 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 7 SELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 346778988887664 4556666665 6778999999999985566666 4777777766543
No 260
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=26.29 E-value=3.2e+02 Score=25.83 Aligned_cols=24 Identities=13% Similarity=-0.110 Sum_probs=14.0
Q ss_pred hhhcCChHHHHHHHHHHHHcCCCCCeee
Q 002846 294 SNSSYRFDDLDSTFNEKENLGQFSNGHM 321 (874)
Q Consensus 294 ~~~~g~~e~A~~lf~eM~~~Gi~Pd~~t 321 (874)
-+..|+.+-+. .+.+.|..++...
T Consensus 32 A~~~g~~~~v~----~Ll~~g~~~~~~~ 55 (223)
T 2f8y_A 32 AARYSRSDAAK----RLLEASADANIQD 55 (223)
T ss_dssp HHHTTCHHHHH----HHHHTTCCTTCCC
T ss_pred HHHcCCHHHHH----HHHHcCCCCCCcC
Confidence 45667765444 4455677666544
No 261
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=26.02 E-value=1.7e+02 Score=26.06 Aligned_cols=49 Identities=27% Similarity=0.346 Sum_probs=28.5
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 432 FCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 432 ~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
+.+.|++++|..+.+.+. .||...|-+|-.+ +.|..+++..-+.+|...
T Consensus 50 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLA----YPDLEPWLALCEY--RLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH--HHTCHHHHHHHHHHHTTC
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHHHHHHhC
Confidence 445666666666555443 4666666665432 556666666666666554
No 262
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=25.58 E-value=2.9e+02 Score=26.47 Aligned_cols=87 Identities=11% Similarity=0.002 Sum_probs=53.1
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---------ccc
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEAS--LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR---------LRS 424 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~t--yn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd---------~~t 424 (874)
.+.+...+..|..+ +++.+.+.|..++... -.+.+...+..|+.+.+..+++.+.+.|..++ ..-
T Consensus 122 ~t~L~~A~~~~~~~----~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g 197 (232)
T 2rfa_A 122 EHPLSFAACVGSEE----IVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQG 197 (232)
T ss_dssp SSHHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTS
T ss_pred CCHHHHHHHcCCHH----HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCC
Confidence 45566667777754 4444555676554321 12456667788999998888888888886442 333
Q ss_pred HHHHHHHHHhCCChhHHHHHHHH
Q 002846 425 YGPALSVFCNNGDVDKACSVEEH 447 (874)
Q Consensus 425 Yn~LI~a~~k~G~~~~A~~l~~e 447 (874)
.+ .|...++.|+.+-+..+++.
T Consensus 198 ~t-pl~~A~~~g~~~~v~~Ll~~ 219 (232)
T 2rfa_A 198 LT-PFKLAGVEGNIVMFQHLMQK 219 (232)
T ss_dssp CC-HHHHHHHHTCHHHHHHHHHH
T ss_pred CC-HHHHHHHcCCHHHHHHHHhc
Confidence 33 44555566766655555544
No 263
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=25.25 E-value=2.7e+02 Score=29.45 Aligned_cols=82 Identities=13% Similarity=0.094 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHHCCCCCC---cccHHHHHHHHHh-----CCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhc-CC
Q 002846 404 DMAFDMVKRMKSLGINPR---LRSYGPALSVFCN-----NGDVDKACSVEEHMLEHGVYP--EEPELEALLRVSVEA-GK 472 (874)
Q Consensus 404 d~A~~l~~~M~~~Gi~Pd---~~tYn~LI~a~~k-----~G~~~~A~~l~~eM~~~Gv~P--d~~ty~~LI~~~~~~-G~ 472 (874)
..|..++++..+. .|+ -..|..|-..|.+ .|+.++|.+.|++-.+-+ | +..++...-+.+|+. |+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln--P~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC--SAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC--CTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC--CCCCchHHHHHHHHHHHhcCC
Confidence 4555556655543 466 4578888888888 499999999999998854 7 378888888999985 99
Q ss_pred chHHHHHHHHHHhcCCCCC
Q 002846 473 GDRVYYLLHKLRTSVRKVS 491 (874)
Q Consensus 473 ~d~A~~ll~~M~~~~~~~s 491 (874)
.++|.++|++-... .+.
T Consensus 256 ~~~a~~~L~kAL~a--~p~ 272 (301)
T 3u64_A 256 RAGFDEALDRALAI--DPE 272 (301)
T ss_dssp HHHHHHHHHHHHHC--CGG
T ss_pred HHHHHHHHHHHHcC--CCC
Confidence 99999999999887 554
No 264
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=24.11 E-value=3.2e+02 Score=25.86 Aligned_cols=130 Identities=8% Similarity=-0.083 Sum_probs=64.0
Q ss_pred hhhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHh-cCCHHHHH
Q 002846 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAK-KYAFQRGF 372 (874)
Q Consensus 294 ~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k-~g~~~~A~ 372 (874)
.+..|..+.-.++.+-+.+.|..+|.... ...+.|.-++.. ...+....
T Consensus 45 A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~------------------------------~g~TpLh~a~~~~~~~~~~~~ 94 (186)
T 3t8k_A 45 VLRNNNDEARYKISMFLINKGADIKSRTK------------------------------EGTTLFFPLFQGGGNDITGTT 94 (186)
T ss_dssp HTTCSCHHHHHHHHHHHHHTTCCSSCCCT------------------------------TCCCTHHHHHHHCTTCHHHHH
T ss_pred HHHcCCcchHHHHHHHHHHCCCCCCCCCC------------------------------CCCcHHHHHHHcCCcchhhHH
Confidence 35566666666677777788877776543 111333222221 22344556
Q ss_pred HHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCh-hHHHHHHHHHHH-CCCCCCcccH--HHHHHHHHhCCChhHHHHHH
Q 002846 373 EIYEKMCLDEVPMNEAS---LTAVGRMAMSMGDG-DMAFDMVKRMKS-LGINPRLRSY--GPALSVFCNNGDVDKACSVE 445 (874)
Q Consensus 373 ~lf~~M~~~Gv~Pd~~t---yn~LI~~~~~~G~~-d~A~~l~~~M~~-~Gi~Pd~~tY--n~LI~a~~k~G~~~~A~~l~ 445 (874)
++.+.+.+.|..+|... .++.+...+..+.. ..-..+++.+.+ .|..++.... .+.|...++.|..+-..-+.
T Consensus 95 ~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~ 174 (186)
T 3t8k_A 95 ELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMME 174 (186)
T ss_dssp HHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 66777777776655322 11333333333332 233455566666 6665554332 12344445555554444444
Q ss_pred HHHHHcCC
Q 002846 446 EHMLEHGV 453 (874)
Q Consensus 446 ~eM~~~Gv 453 (874)
+.+.+.++
T Consensus 175 ~~~~~~~~ 182 (186)
T 3t8k_A 175 DYIKKYNL 182 (186)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhc
Confidence 44444343
No 265
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.94 E-value=4.3e+02 Score=28.91 Aligned_cols=103 Identities=10% Similarity=-0.057 Sum_probs=69.9
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCCc----ccHH
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLD--EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL---GINPRL----RSYG 426 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~--Gv~Pd~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~---Gi~Pd~----~tYn 426 (874)
..+-.-|.+.|++++|.++|.+|... +..--...|-.+|+.+...+++..|...+++.... +-.|+. ..|.
T Consensus 135 ~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~ 214 (429)
T 4b4t_R 135 INLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYY 214 (429)
T ss_dssp HHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHH
Confidence 55668889999999999999999974 33334567888899999999999999998876533 322322 2222
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHH
Q 002846 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460 (874)
Q Consensus 427 ~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty 460 (874)
.++ +...+++..|...|-+....--..+..++
T Consensus 215 gl~--~l~~r~f~~Aa~~f~e~~~t~~~~e~~~~ 246 (429)
T 4b4t_R 215 GIH--CLAVRNFKEAAKLLVDSLATFTSIELTSY 246 (429)
T ss_dssp HHG--GGGTSCHHHHHHHHHHHHHHSCCSCHHHH
T ss_pred HHH--HHHhChHHHHHHHHHHHhccCCccchhhH
Confidence 222 23457888888888776554333343333
No 266
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=22.75 E-value=1.6e+02 Score=26.09 Aligned_cols=49 Identities=22% Similarity=0.189 Sum_probs=27.9
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Q 002846 432 FCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (874)
Q Consensus 432 ~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M~~~ 486 (874)
+.+.|++++|..+.+.+. .||...|-+|-. .+.|..+++..-+.+|...
T Consensus 49 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 445566666665554432 466666655543 2556666666666666554
No 267
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=22.59 E-value=74 Score=29.08 Aligned_cols=114 Identities=18% Similarity=0.169 Sum_probs=59.9
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccH--HHHHHH
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASL--TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY--GPALSV 431 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~ty--n~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tY--n~LI~a 431 (874)
...+...++.|+++....+++. .+..++.... .+.+...+..|+.+ +++.+.+.|..++.... .+.|..
T Consensus 9 ~~~l~~A~~~g~~~~v~~ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~ 81 (165)
T 3twr_A 9 DRQLLEAAKAGDVETVKKLCTV---QSVNCRDIEGRQSTPLHFAAGYNRVS----VVEYLLQHGADVHAKDKGGLVPLHN 81 (165)
T ss_dssp HHHHHHHHHHTCHHHHHHHCCT---TTTTCCCTTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred hHHHHHHHHhCCHHHHHHHHHc---CCCCccccccCCCCHHHHHHHcChHH----HHHHHHhcCCCCCccCCCCCCHHHH
Confidence 4555666778887776666643 2222222111 13455556777765 44455566776665433 245566
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCCchHHHHHH
Q 002846 432 FCNNGDVDKACSVEEHMLEHGVYPEEPEL--EALLRVSVEAGKGDRVYYLL 480 (874)
Q Consensus 432 ~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty--~~LI~~~~~~G~~d~A~~ll 480 (874)
.+..|+.+- .+.+.+.|..++.... .+.+...+..|..+-+..++
T Consensus 82 A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 128 (165)
T 3twr_A 82 ACSYGHYEV----AELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLL 128 (165)
T ss_dssp HHHTTCHHH----HHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHcCcHHH----HHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 667787654 4445556665543221 12334445566655443333
No 268
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=22.52 E-value=97 Score=29.28 Aligned_cols=24 Identities=17% Similarity=0.124 Sum_probs=14.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 002846 390 LTAVGRMAMSMGDGDMAFDMVKRM 413 (874)
Q Consensus 390 yn~LI~~~~~~G~~d~A~~l~~~M 413 (874)
.+.+|.-|...|+.++|.+.++++
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHh
Confidence 344555666666666666666555
No 269
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=22.49 E-value=2.7e+02 Score=28.11 Aligned_cols=207 Identities=9% Similarity=-0.008 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH---------HHcCCCCCHHHHHHHHHHHHhcccCCCcccCCCCHHHHHHHHhhcccC
Q 002846 195 RVELDMCSKRGDVMGAIRLYDKA---------QREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMN 265 (874)
Q Consensus 195 n~LI~a~~k~G~~~~Al~lf~~M---------~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~G~~~~A~~vf~v~~~~ 265 (874)
.+.++..+..|+..+..++.... ...++......-.+.|...+ ..|+.+-...++.
T Consensus 16 ~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa----------~~g~~~~v~~Ll~----- 80 (285)
T 3d9h_A 16 PRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAA----------IHGHQLSLRNLIS----- 80 (285)
T ss_dssp --------------------------CCSEECCCCTTCSSSCCSCCHHHHHH----------HTTCHHHHHHHHH-----
T ss_pred HHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHH----------HcCCHHHHHHHHH-----
Q ss_pred chhhhhcCCCC----chhhhHhhhcCcccChhhhhcCChHHHHHHHHHHHHcCCCCCeeeec----------cccHHHHH
Q 002846 266 STELGDSRDMD----NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL----------NSQLLDGR 331 (874)
Q Consensus 266 s~em~~~~gi~----d~vtyn~LI~~~~~~~~~~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~----------~g~~~eA~ 331 (874)
.|.. |..-++.|.-+ +..|..+-+..|++. |..++..... .|..+-..
T Consensus 81 -------~g~~~~~~~~~g~t~L~~A-------~~~g~~~~v~~Ll~~----ga~~~~~~~~g~t~L~~A~~~~~~~~v~ 142 (285)
T 3d9h_A 81 -------QGWAVNIITADHVSPLHEA-------CLGGHLSCVKILLKH----GAQVNGVTADWHTPLFNACVSGSWDCVN 142 (285)
T ss_dssp -------TTCCSCEECTTCCCHHHHH-------HHTTCHHHHHHHHHT----TCCSSCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred -------CCCCCCCcCCCCCCHHHHH-------HHCCcHHHHHHHHHC----CCCCCCCCCCCCCHHHHHHHcCHHHHHH
Q ss_pred HhhhcC-CCCcccccccccccCCccchHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCChhHHHH
Q 002846 332 SNLERG-PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLT--AVGRMAMSMGDGDMAFD 408 (874)
Q Consensus 332 ~l~~~m-~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~tyn--~LI~~~~~~G~~d~A~~ 408 (874)
.+++.. .++..... .+.+...+..|..+ +++.+.+.|..++..... +.+...+..|+. +
T Consensus 143 ~Ll~~g~~~~~~~~g----------~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~----~ 204 (285)
T 3d9h_A 143 LLLQHGASVQPESDL----------ASPIHEAARRGHVE----CVNSLIAYGGNIDHKISHLGTPLYLACENQQR----A 204 (285)
T ss_dssp HHHHTTCCSSCSCTT----------SCHHHHHHHHTCHH----HHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCH----H
T ss_pred HHHHCCCCCCCCCCC----------CCHHHHHHHcCCHH----HHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcH----H
Q ss_pred HHHHHHHCCCCCCcccHH-HHHHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 002846 409 MVKRMKSLGINPRLRSYG-PALSVFCNNGDVDKACSVEEHMLEHGVYPE 456 (874)
Q Consensus 409 l~~~M~~~Gi~Pd~~tYn-~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd 456 (874)
+++.+.+.|..++..... +.|...++.|+. ++.+.+.+.|..++
T Consensus 205 ~v~~Ll~~ga~~~~~~~g~t~L~~A~~~~~~----~~v~~Ll~~gad~~ 249 (285)
T 3d9h_A 205 CVKKLLESGADVNQGKGQDSPLHAVVRTASE----ELACLLMDFGADTQ 249 (285)
T ss_dssp HHHHHHHTTCCTTCCBTTBCHHHHHHHTTCH----HHHHHHHHTTCCTT
T ss_pred HHHHHHHCCCCCCCCCCCCCHHHHHHHcCCH----HHHHHHHHCCCCCC
No 270
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=21.65 E-value=3.1e+02 Score=27.69 Aligned_cols=88 Identities=8% Similarity=0.084 Sum_probs=60.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 002846 358 RLSEDAKKYAFQRGFEIYEKMCLD--EVPM----NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV 431 (874)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~--Gv~P----d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tYn~LI~a 431 (874)
-|+.+....++++|.+++++.... ++++ +.......|+.-.....-.-+..+.+++.. .++...--..+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 367788889999999999877652 3332 112333445555555555566667766633 4566667778899
Q ss_pred HHhCCChhHHHHHHHHH
Q 002846 432 FCNNGDVDKACSVEEHM 448 (874)
Q Consensus 432 ~~k~G~~~~A~~l~~eM 448 (874)
+.+.|+-++|.++|=+.
T Consensus 101 L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHH
Confidence 99999999999999554
No 271
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=21.07 E-value=78 Score=28.57 Aligned_cols=143 Identities=10% Similarity=0.028 Sum_probs=0.0
Q ss_pred hhcCChHHHHHHHHHHHHcCCCCCeeeeccccHHHHHHhhhcCCCCcccccccccccCCccchHHHHHHhcCCHHHHHHH
Q 002846 295 NSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEI 374 (874)
Q Consensus 295 ~~~g~~e~A~~lf~eM~~~Gi~Pd~~ty~~g~~~eA~~l~~~m~pd~~ty~~w~i~~~~~~n~lI~~~~k~g~~~~A~~l 374 (874)
+..|+.+.+..+++. .+..++.... ...+.+.. +..|..+ +
T Consensus 10 ~~~g~~~~v~~ll~~---~~~~~~~~~~-------------------------------~g~t~L~~-~~~~~~~----~ 50 (156)
T 1bd8_A 10 AARGDVQEVRRLLHR---ELVHPDALNR-------------------------------FGKTALQV-MMFGSTA----I 50 (156)
T ss_dssp HHHTCHHHHHHHHHT---TCCCTTCCCT-------------------------------TSCCHHHH-SCTTCHH----H
T ss_pred HHhCCHHHHHHHHHh---hCcCccccCC-------------------------------CCCcHHHH-HHcCCHH----H
Q ss_pred HHHHHHCCCCCCHHHHH--HHHHHHHhcCChhHHHHHHHHHHHCCCCCCccc--HHHHHHHHHhCCChhHHHHHHHHHHH
Q 002846 375 YEKMCLDEVPMNEASLT--AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS--YGPALSVFCNNGDVDKACSVEEHMLE 450 (874)
Q Consensus 375 f~~M~~~Gv~Pd~~tyn--~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~t--Yn~LI~a~~k~G~~~~A~~l~~eM~~ 450 (874)
++.+.+.|..++..... +.+...+..|+.+ +++.+.+.|..++... -.+.|...+..|+.+-+.-+++.
T Consensus 51 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--- 123 (156)
T 1bd8_A 51 ALELLKQGASPNVQDTSGTSPVHDAARTGFLD----TLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE--- 123 (156)
T ss_dssp HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT---
T ss_pred HHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHH----HHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc---
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 002846 451 HGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (874)
Q Consensus 451 ~Gv~Pd~~ty~~LI~~~~~~G~~d~A~~ll~~M 483 (874)
..+......-.+-+...+..|..+-+..+++.|
T Consensus 124 ~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~ 156 (156)
T 1bd8_A 124 SDLHRRDARGLTPLELALQRGAQDLVDILQGHM 156 (156)
T ss_dssp SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTTC
T ss_pred cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhhC
No 272
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=20.67 E-value=3.3e+02 Score=34.11 Aligned_cols=113 Identities=10% Similarity=-0.004 Sum_probs=79.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC-----------------------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 002846 360 SEDAKKYAFQRGFEIYEKMCLDEVPM-----------------------NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (874)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~Gv~P-----------------------d~~tyn~LI~~~~~~G~~d~A~~l~~~M~~~ 416 (874)
..|...|++++|.+.|.+-- .|+.. -..=|..++..+-+.+..+.+.++-..-.+.
T Consensus 850 ~~~L~~ge~~~A~~~F~kaa-~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~ 928 (1139)
T 4fhn_B 850 LIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 928 (1139)
T ss_dssp HHHHHTTCHHHHHHHHHTCC-CSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHh-hhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34556899999999997632 12211 1123778889999999999888776654433
Q ss_pred CC--CCCc--ccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchH
Q 002846 417 GI--NPRL--RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDR 475 (874)
Q Consensus 417 Gi--~Pd~--~tYn~LI~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~ty~~LI~~~~~~G~~d~ 475 (874)
.- .++. ..|..+..++...|++++|+..+-.+...... ......||..+|..|..++
T Consensus 929 ~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 929 KETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHHHHHHHCCHHH
T ss_pred ccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHhCCChhh
Confidence 11 1111 25788999999999999999999888876543 4667778888887666443
No 273
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=20.10 E-value=1.7e+02 Score=29.82 Aligned_cols=114 Identities=15% Similarity=0.055 Sum_probs=60.5
Q ss_pred chHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccH---HHHH
Q 002846 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEA---SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY---GPAL 429 (874)
Q Consensus 356 n~lI~~~~k~g~~~~A~~lf~~M~~~Gv~Pd~~---tyn~LI~~~~~~G~~d~A~~l~~~M~~~Gi~Pd~~tY---n~LI 429 (874)
.+.+...+..|..+ +++.+.+.|..++.. -++ .+...+..|+.+-+..+++ .|..++.... .+.|
T Consensus 63 ~t~L~~A~~~g~~~----~v~~Ll~~ga~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~----~ga~~~~~~~~g~~t~L 133 (285)
T 3kea_A 63 EFPLHQAATLEDTK----IVKILLFSGLDDSQFDDKGNT-ALYYAVDSGNMQTVKLFVK----KNWRLMFYGKTGWKTSF 133 (285)
T ss_dssp CCHHHHHTTSSSCH----HHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHH----HCGGGGGCSSSGGGSHH
T ss_pred CCHHHHHHHcCCHH----HHHHHHHCCCCCCCcCCCCCc-HHHHHHHcCCHHHHHHHHh----cCCCCCccCCCCCCCHH
Confidence 44455556667654 444444556554422 223 3445566777765554444 4655554332 4566
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCchHHHHHHHH
Q 002846 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEP-ELEALLRVSVEAGKGDRVYYLLHK 482 (874)
Q Consensus 430 ~a~~k~G~~~~A~~l~~eM~~~Gv~Pd~~-ty~~LI~~~~~~G~~d~A~~ll~~ 482 (874)
...+..|+.+-+ +.+.+.|..+... .-.+.+...+..|..+-+..|++.
T Consensus 134 ~~A~~~~~~~~v----~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 134 YHAVMLNDVSIV----SYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHHTTCHHHH----HHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHH----HHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHc
Confidence 667777876544 4444455433111 233445555677877766666654
Done!