BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002847
(874 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 238 bits (608), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 136/332 (40%), Positives = 192/332 (57%), Gaps = 10/332 (3%)
Query: 9 GNIRVFCRIRPISM--GENFGRLRPV-IAKDSSNVLLKLADNKSKNYSFDKVFHPGSSQD 65
GNIRV R+RP++ GE V D +++ L K ++ DKVF P +SQ
Sbjct: 4 GNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGKPVSFELDKVFSPQASQQ 63
Query: 66 EVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAME-- 123
+VF EV+ ++ S +DG+N CIFAYGQTG GK++TMEGT ++PGI RA++ +F + E
Sbjct: 64 DVFQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQEKA 123
Query: 124 SNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQVND 183
S+ + I+ S EIY L+DLL +P + + + + + G + + L QV
Sbjct: 124 SDWEYTITVSAAEIYNEVLRDLLGKEPQEKLE-----IRLCPDGSGQLYVPGLTEFQVQS 178
Query: 184 FNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFDAPERRREKNKIWLVDLGGS 243
+ +++ G H ++ +++ D R K+ LVDL GS
Sbjct: 179 VDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLAGS 238
Query: 244 ERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVLKDSLGEDSK 303
ERV K+ A G RL E + IN SLSALGDVI AL+ R+ HVP+RNSKLT +L+DSL DSK
Sbjct: 239 ERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSK 298
Query: 304 TLMLVHVSPKEDDLCETICSLNFATRVKSVHL 335
TLM+V VSP E + ET+ SL FA RV+SV L
Sbjct: 299 TLMVVQVSPVEKNTSETLYSLKFAERVRSVEL 330
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 231 bits (589), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 121/330 (36%), Positives = 194/330 (58%), Gaps = 8/330 (2%)
Query: 7 IAGNIRVFCRIRPISMGENFGRLRPVI-AKDSSNVLLKLADNKSKNYSFDKVFHPGSSQD 65
+ G IRV+CR+RP+ E + R I + D V D+K+K + +D+VF ++QD
Sbjct: 3 MKGKIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDKAKQHMYDRVFDGNATQD 62
Query: 66 EVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAMESN 125
+VF + + +++S +DGYN CIFAYGQTG+GK+FT+ G +PG+ PRA+ +F+ + +
Sbjct: 63 DVFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDS 122
Query: 126 HAFRISFS--MLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQVND 183
+ F S M+E+Y +L DLL+ + K L I + KG + ++N+ + ++
Sbjct: 123 NKFSFSLKAYMVELYQDTLVDLLLPKQAKRLK-----LDIKKDSKGMVSVENVTVVSIST 177
Query: 184 FNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFDAPERRREKNKIWLVDLGGS 243
+ + + + G H ++ + I + + + K+ VDL GS
Sbjct: 178 YEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLAGS 237
Query: 244 ERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVLKDSLGEDSK 303
ERV K+ + G +L E ++IN SLSALGDVI AL +H+PYRN KLT ++ DSLG ++K
Sbjct: 238 ERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAK 297
Query: 304 TLMLVHVSPKEDDLCETICSLNFATRVKSV 333
TLM V++SP E +L ET SL +A+RV+S+
Sbjct: 298 TLMFVNISPAESNLDETHNSLTYASRVRSI 327
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 228 bits (582), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 134/371 (36%), Positives = 209/371 (56%), Gaps = 15/371 (4%)
Query: 4 VSAIAGNIRVFCRIRPISMGENFGRLRPVIAK-DSSNVLLKLADNKSKNYSFDKVFHPGS 62
+ + G IRV+CRIRP++ E+ R + ++ D V D+K K + +D+VF +
Sbjct: 8 IEDMKGKIRVYCRIRPLNEKESSEREKQMLTTVDEFTVEHPWKDDKRKQHIYDRVFDMRA 67
Query: 63 SQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAM 122
SQD++F + + +++S +DGYN CIFAYGQTG+GK+FT+ G +PG+ PRA + +F
Sbjct: 68 SQDDIFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGHESNPGLTPRATKELFNILK 127
Query: 123 ESNHAFRISFS--MLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQ 180
+ F S M+E+Y +L DLL+ + + L I + KG + ++N+ TI
Sbjct: 128 RDSKRFSFSLKAYMVELYQDTLVDLLLPKSARRLK-----LEIKKDSKGMVFVENVTTIP 182
Query: 181 VNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFDAPERRREKNKIWLVDL 240
++ + + G H ++ + I D + + K+ VDL
Sbjct: 183 ISTLEELRMILERGSERRHVSGTNMNEESSRSHLILSVVIESIDLQTQSAARGKLSFVDL 242
Query: 241 GGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVLKDSLGE 300
GSERV K+ + G +L E ++IN SLSALGDVI AL +H+PYRN KLT ++ DSLG
Sbjct: 243 AGSERVKKSGSAGNQLKEAQSINKSLSALGDVIGALSSGNQHIPYRNHKLTMLMSDSLGG 302
Query: 301 DSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHLGHEDSNEARDQKEVSMKNL-----Q 355
++KTLM V+VSP E +L ET SL +A+RV+++ ++ S ++ V +K L +
Sbjct: 303 NAKTLMFVNVSPAESNLDETYNSLLYASRVRTI--VNDPSKHISSKEMVRLKKLVAYWKE 360
Query: 356 QKMKKIEEERL 366
Q KK EEE L
Sbjct: 361 QAGKKGEEEDL 371
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 207 bits (528), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 126/369 (34%), Positives = 198/369 (53%), Gaps = 22/369 (5%)
Query: 4 VSAIAGNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADNKSKNYSFDKVFHPGSS 63
+S+ A +I+V R RP + E +P++ + + +++FD+VF
Sbjct: 1 MSSSANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQGSFTFDRVFDMSCK 60
Query: 64 QDEVFS-EVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGT----PDSPGIVPRAIEAIF 118
Q ++F ++P + +L+GYN +FAYGQTG GKS+TM GT PD G++PR +E IF
Sbjct: 61 QSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIF 120
Query: 119 KQAMES--NHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGIEIDNL 176
+ S N + + S +EIY+ ++DLL Q D LP +H E G+ + L
Sbjct: 121 TSILSSAANIEYTVRVSYMEIYMERIRDLLAPQ----NDNLP----VHEEKNRGVYVKGL 172
Query: 177 VTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFDAPERRREKNKIW 236
+ I V+ + + R G H + I+IT + + +++
Sbjct: 173 LEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLF 232
Query: 237 LVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKR-HVPYRNSKLTQVLK 295
LVDL GSE+V KT A G+ L+E K IN SLSALG VI AL K HVPYR+SKLT++L+
Sbjct: 233 LVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQ 292
Query: 296 DSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHLGHEDSNEARDQKEVSMKNLQ 355
+SLG +S+T ++++ SP + ET+ +L F R KS+ N+A+ E+S L+
Sbjct: 293 ESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIK------NKAKVNAELSPAELK 346
Query: 356 QKMKKIEEE 364
Q + K + +
Sbjct: 347 QMLAKAKTQ 355
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 203 bits (516), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 127/341 (37%), Positives = 177/341 (51%), Gaps = 19/341 (5%)
Query: 4 VSAIAGNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADNKSKN------YSFDKV 57
V + GNIRVFCRIRP E D S V L+ D ++K+ +SFD+V
Sbjct: 62 VMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQV 121
Query: 58 FHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAI 117
FHP SSQ ++F V P+I+S LDGYN CIFAYGQTG+GK++TM+G P+S G++PR ++ +
Sbjct: 122 FHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLL 181
Query: 118 F---KQAMESNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGIEID 174
F + + I + LEIY L DLL + + + K I +
Sbjct: 182 FDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDME------IRMAKNNKNDIYVS 235
Query: 175 NLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFDAPERRREKNK 234
N+ V D N L H + ++ + A ++
Sbjct: 236 NITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGS 295
Query: 235 IWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVL 294
I LVDL GSE + R+ E K IN SLS L +VI AL +++ H+PYRNSKLT +L
Sbjct: 296 INLVDLAGSE----SPKTSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLL 351
Query: 295 KDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHL 335
SLG +SKTLM ++VSP +D E++ SL FA V S +
Sbjct: 352 MPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKM 392
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 202 bits (515), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 127/341 (37%), Positives = 177/341 (51%), Gaps = 19/341 (5%)
Query: 4 VSAIAGNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADNKSKN------YSFDKV 57
V + GNIRVFCRIRP E D S V L+ D ++K+ +SFD+V
Sbjct: 48 VMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQV 107
Query: 58 FHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAI 117
FHP SSQ ++F V P+I+S LDGYN CIFAYGQTG+GK++TM+G P+S G++PR ++ +
Sbjct: 108 FHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLL 167
Query: 118 F---KQAMESNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGIEID 174
F + + I + LEIY L DLL + + + K I +
Sbjct: 168 FDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDME------IRMAKNNKNDIYVS 221
Query: 175 NLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFDAPERRREKNK 234
N+ V D N L H + ++ + A ++
Sbjct: 222 NITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGS 281
Query: 235 IWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVL 294
I LVDL GSE + R+ E K IN SLS L +VI AL +++ H+PYRNSKLT +L
Sbjct: 282 INLVDLAGSE----SPKTSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLL 337
Query: 295 KDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHL 335
SLG +SKTLM ++VSP +D E++ SL FA V S +
Sbjct: 338 MPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKM 378
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 201 bits (512), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 126/341 (36%), Positives = 177/341 (51%), Gaps = 19/341 (5%)
Query: 4 VSAIAGNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADNKSKN------YSFDKV 57
V + GNIRVFCRIRP E D S V L+ D ++K+ +SFD+V
Sbjct: 51 VMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQV 110
Query: 58 FHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAI 117
FHP SSQ ++F V P+I+S LDGYN CIFAYGQ+G+GK++TM+G P+S G++PR ++ +
Sbjct: 111 FHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQSGSGKTYTMDGVPESVGVIPRTVDLL 170
Query: 118 F---KQAMESNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGIEID 174
F + + I + LEIY L DLL + + + K I +
Sbjct: 171 FDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDME------IRMAKNNKNDIYVS 224
Query: 175 NLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFDAPERRREKNK 234
N+ V D N L H + ++ + A ++
Sbjct: 225 NITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGS 284
Query: 235 IWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVL 294
I LVDL GSE + R+ E K IN SLS L +VI AL +++ H+PYRNSKLT +L
Sbjct: 285 INLVDLAGSE----SPKTSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLL 340
Query: 295 KDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHL 335
SLG +SKTLM ++VSP +D E++ SL FA V S +
Sbjct: 341 MPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKM 381
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 200 bits (509), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 126/341 (36%), Positives = 176/341 (51%), Gaps = 19/341 (5%)
Query: 4 VSAIAGNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADNKSKN------YSFDKV 57
V + GNIRVFCRIRP E D S V L+ D ++K+ +SFD+V
Sbjct: 51 VMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQV 110
Query: 58 FHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAI 117
FHP SSQ ++F V P+I+S LDGYN CIFAYGQTG+GK++TM+G P+S G++PR ++ +
Sbjct: 111 FHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLL 170
Query: 118 F---KQAMESNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGIEID 174
F + + I + LEIY L DLL + + + K I +
Sbjct: 171 FDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDME------IRMAKNNKNDIYVS 224
Query: 175 NLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFDAPERRREKNK 234
N+ V D N L H + ++ + A ++
Sbjct: 225 NITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGS 284
Query: 235 IWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVL 294
I LVDL GSE + R+ E K I SLS L +VI AL +++ H+PYRNSKLT +L
Sbjct: 285 INLVDLAGSE----SPKTSTRMTETKNIKRSLSELTNVILALLQKQDHIPYRNSKLTHLL 340
Query: 295 KDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHL 335
SLG +SKTLM ++VSP +D E++ SL FA V S +
Sbjct: 341 MPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKM 381
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 200 bits (508), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 125/335 (37%), Positives = 174/335 (51%), Gaps = 19/335 (5%)
Query: 10 NIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADNKSKN------YSFDKVFHPGSS 63
NIRVFCRIRP E D S V L+ D ++K+ +SFD+VFHP SS
Sbjct: 60 NIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSS 119
Query: 64 QDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIF---KQ 120
Q ++F V P+I+S LDGYN CIFAYGQTG+GK++TM+G P+S G++PR ++ +F +
Sbjct: 120 QSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRG 179
Query: 121 AMESNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQ 180
+ I + LEIY L DLL + + + K I + N+
Sbjct: 180 YRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDME------IRMAKNNKNDIYVSNITEET 233
Query: 181 VNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFDAPERRREKNKIWLVDL 240
V D N L H + ++ + A ++ I LVDL
Sbjct: 234 VLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDL 293
Query: 241 GGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVLKDSLGE 300
GSE + R+ E K IN SLS L +VI AL +++ H+PYRNSKLT +L SLG
Sbjct: 294 AGSE----SPKTSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGG 349
Query: 301 DSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHL 335
+SKTLM ++VSP +D E++ SL FA V S +
Sbjct: 350 NSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKM 384
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 194 bits (492), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 132/358 (36%), Positives = 189/358 (52%), Gaps = 34/358 (9%)
Query: 5 SAIAGNIRVFCRIRPISMGENFGR----LRPVIAKDSSNVLLKLADNKS----------- 49
++ GNIRVFCR+RP+ GE L P S+ +L+ ++S
Sbjct: 18 GSLKGNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAP 77
Query: 50 -----KNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTP 104
++SFD+VF PGS QDEVF E+ +++S LDGY CIFAYGQTG+GK+FTMEG P
Sbjct: 78 APPPRHDFSFDRVFPPGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGP 137
Query: 105 DS----PGIVPRAIEAIFKQAME-SNHAFRISF--SMLEIYLGSLKDLLVTQPTKATDPL 157
G++PRA+ +F A E S + SF S +EIY +++DLL T K
Sbjct: 138 GGDPQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLATGTRKGQG-- 195
Query: 158 PPCLSIHTEPKG-GIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMI 216
C P + + N + V+ + L L + H +
Sbjct: 196 GECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVF 255
Query: 217 RISITCFDAPERRREKNKIWLVDLGGSERVLKTKARG----RRLDEGKAINLSLSALGDV 272
++ I+ + + + LVDL GSER+ A G RL E +AIN SLS LG V
Sbjct: 256 QLQISGEHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLV 315
Query: 273 IYALQRRKRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRV 330
I AL ++ HVPYRNSKLT +L++SLG +K LM V++SP E+++ E++ SL FA++V
Sbjct: 316 IMALSNKESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKV 373
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 192 bits (487), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 120/350 (34%), Positives = 182/350 (52%), Gaps = 23/350 (6%)
Query: 6 AIAGNIRVFCRIRPISMGENFGRLRPVI-----AKDSSNVLLKLADNK--SKNYSFDKVF 58
A+ GNIRV+CR+RP + E +I AK + ++ + + + S N+ FD +F
Sbjct: 2 ALRGNIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMIF 61
Query: 59 HPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIF 118
P + E+F E+ +++S LDGYN CIFAYGQTG+GK++TM D G++P + IF
Sbjct: 62 EPSHTNKEIFEEIRQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNAGD--GMIPMTLSHIF 119
Query: 119 KQAM---ESNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSI------HTEPKG 169
K E + + +EIY ++ DLL + K+ D + L H K
Sbjct: 120 KWTANLKERGWNYEMECEYIEIYNETILDLL--RDFKSHDNIDEILDSQKHDIRHDHEKQ 177
Query: 170 GIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFDAPERR 229
G I N+ +++ +Q + + + H + + I +
Sbjct: 178 GTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHTGE 237
Query: 230 REKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQR---RKRHVPYR 286
+ K+ LVDL GSER+ + G RL E + IN SLS LGDVIYAL KR++P+R
Sbjct: 238 TSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFR 297
Query: 287 NSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHLG 336
NSKLT +L+ SL DSKTLM V++ P + + ET+ SL FA++V S +
Sbjct: 298 NSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKVNSTKIA 347
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 191 bits (485), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 125/348 (35%), Positives = 182/348 (52%), Gaps = 25/348 (7%)
Query: 7 IAGNIRVFCRIRPISMGENFGRLR----------PVIAKDSSNVLLKLADNKSKNYS--- 53
+ GNIRVFCRIR +S + P D S L + N + N+S
Sbjct: 372 LKGNIRVFCRIRNVSSSSSSSSSSSSEDIIQYEAPQDINDESKQELVITRNINNNFSNLR 431
Query: 54 --FDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVP 111
FDK+F S D VF E+ +I+ LDG N C+FAYGQTG+GK+FTM + + G++P
Sbjct: 432 FLFDKIFEREQSNDLVFEELSQLIQCSLDGTNVCVFAYGQTGSGKTFTM--SHPTNGMIP 489
Query: 112 RAIEAIF---KQAMESNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPK 168
+++ IF ++ E ++ + +EIY ++ DLL DP H +
Sbjct: 490 LSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLL----NPKIDPNTKYEIKHDDIA 545
Query: 169 GGIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFDAPER 228
G + N+ TI + QA+ + + H + I + +++ +
Sbjct: 546 GKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGYNSLTK 605
Query: 229 RREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQ-RRKRHVPYRN 287
+ L+DL GSER+ ++A G RL E +AIN SLS LGDVI++L + HVPYRN
Sbjct: 606 ESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRN 665
Query: 288 SKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHL 335
SKLT +LK SLG +SKTLM V++SP DL ETI SL FAT+V + +
Sbjct: 666 SKLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFATKVNNTRI 713
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 187 bits (476), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 117/338 (34%), Positives = 177/338 (52%), Gaps = 22/338 (6%)
Query: 11 IRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADNKS------KNYSFDKVFHPGSSQ 64
+RV R RP++ E V+ D + + + K K ++FD V+ + Q
Sbjct: 23 VRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAKQ 82
Query: 65 DEVFSEV-EPVIKSVLDGYNACIFAYGQTGTGKSFTMEGT---PDSPGIVPRAIEAIFKQ 120
E++ E P++ SVL G+N IFAYGQTGTGK++TMEG P+ G++P + + IF
Sbjct: 83 FELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTH 142
Query: 121 AMES-NHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGIEIDNLVTI 179
S N + + S LEIY ++DLL TK L + P G+ + +L +
Sbjct: 143 ISRSQNQQYLVRASYLEIYQEEIRDLLSKDQTKR-------LELKERPDTGVYVKDLSSF 195
Query: 180 QVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFDAP---ERRREKNKIW 236
+ + +G + H + I+I C + E K+
Sbjct: 196 VTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENHIRVGKLN 255
Query: 237 LVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYAL-QRRKRHVPYRNSKLTQVLK 295
LVDL GSER KT A+G RL E INLSLSALG+VI AL + H+PYR+SKLT++L+
Sbjct: 256 LVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQ 315
Query: 296 DSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSV 333
DSLG ++KT+M+ +V P ++ ET+ +L +A R K++
Sbjct: 316 DSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNI 353
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 187 bits (475), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 119/330 (36%), Positives = 177/330 (53%), Gaps = 18/330 (5%)
Query: 10 NIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADNKSKNYSFDKVFHPGSSQDEVFS 69
NI+V CR RP++ E R IAK + +A SK Y+FD+VF +SQ++V++
Sbjct: 8 NIKVMCRFRPLNESE-VNRGDKYIAKFQGEDTVVIA---SKPYAFDRVFQSSTSQEQVYN 63
Query: 70 E-VEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGT---PDSPGIVPRAIEAIFK--QAME 123
+ + ++K VL+GYN IFAYGQT +GK+ TMEG P+ GI+PR ++ IF +M+
Sbjct: 64 DCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMD 123
Query: 124 SNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQVND 183
N F I S EIYL ++DLL T LS+H + + V
Sbjct: 124 ENLEFHIKVSYFEIYLDKIRDLLDVSKTN--------LSVHEDKNRVPYVKGCTERFVCS 175
Query: 184 FNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFDAPERRREKNKIWLVDLGGS 243
++ + G H + I++ + ++ K++LVDL GS
Sbjct: 176 PDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGS 235
Query: 244 ERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVLKDSLGEDSK 303
E+V KT A G LDE K IN SLSALG+VI AL +VPYR+SK+T++L+DSLG + +
Sbjct: 236 EKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCR 295
Query: 304 TLMLVHVSPKEDDLCETICSLNFATRVKSV 333
T +++ SP + ET +L F R K++
Sbjct: 296 TTIVICCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 187 bits (474), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 119/330 (36%), Positives = 177/330 (53%), Gaps = 18/330 (5%)
Query: 10 NIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADNKSKNYSFDKVFHPGSSQDEVFS 69
NI+V CR RP++ E R IAK + +A SK Y+FD+VF +SQ++V++
Sbjct: 8 NIKVMCRFRPLNESE-VNRGDKYIAKFQGEDTVVIA---SKPYAFDRVFQSSTSQEQVYN 63
Query: 70 E-VEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGT---PDSPGIVPRAIEAIFK--QAME 123
+ + ++K VL+GYN IFAYGQT +GK+ TMEG P+ GI+PR ++ IF +M+
Sbjct: 64 DCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMD 123
Query: 124 SNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQVND 183
N F I S EIYL ++DLL T LS+H + + V
Sbjct: 124 ENLEFHIKVSYFEIYLDKIRDLLDVSKTN--------LSVHEDKNRVPYVKGCTERFVCS 175
Query: 184 FNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFDAPERRREKNKIWLVDLGGS 243
++ + G H + I++ + ++ K++LVDL GS
Sbjct: 176 PDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGS 235
Query: 244 ERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVLKDSLGEDSK 303
E+V KT A G LDE K IN SLSALG+VI AL +VPYR+SK+T++L+DSLG + +
Sbjct: 236 EKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCR 295
Query: 304 TLMLVHVSPKEDDLCETICSLNFATRVKSV 333
T +++ SP + ET +L F R K++
Sbjct: 296 TTIVICCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 187 bits (474), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 118/330 (35%), Positives = 177/330 (53%), Gaps = 18/330 (5%)
Query: 10 NIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADNKSKNYSFDKVFHPGSSQDEVFS 69
NI+V CR RP++ E R +AK + +A SK Y+FD+VF +SQ++V++
Sbjct: 8 NIKVMCRFRPLNESE-VNRGDKYVAKFQGEDTVMIA---SKPYAFDRVFQSSTSQEQVYN 63
Query: 70 E-VEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGT---PDSPGIVPRAIEAIFK--QAME 123
+ + ++K VL+GYN IFAYGQT +GK+ TMEG P+ GI+PR ++ IF +M+
Sbjct: 64 DCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMD 123
Query: 124 SNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQVND 183
N F I S EIYL ++DLL T LS+H + + V
Sbjct: 124 ENLEFHIKVSYFEIYLDKIRDLLDVSKTN--------LSVHEDKNRVPYVKGCTERFVCS 175
Query: 184 FNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFDAPERRREKNKIWLVDLGGS 243
++ + G H + I++ + ++ K++LVDL GS
Sbjct: 176 PDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGS 235
Query: 244 ERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVLKDSLGEDSK 303
E+V KT A G LDE K IN SLSALG+VI AL +VPYR+SK+T++L+DSLG + +
Sbjct: 236 EKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCR 295
Query: 304 TLMLVHVSPKEDDLCETICSLNFATRVKSV 333
T +++ SP + ET +L F R K++
Sbjct: 296 TTIVICCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 184 bits (468), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 128/368 (34%), Positives = 194/368 (52%), Gaps = 22/368 (5%)
Query: 11 IRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADNKSKNYSFDKVFHPGSSQDEVFSE 70
I+V CR RP++ E + V+ K +NV K Y FDKVF P +SQ++V++E
Sbjct: 13 IKVVCRFRPLNDSEEKAGSKFVV-KFPNNVEENCISIAGKVYLFDKVFKPNASQEKVYNE 71
Query: 71 V-EPVIKSVLDGYNACIFAYGQTGTGKSFTMEGT-PDS--PGIVPRAIEAIFKQ--AMES 124
+ ++ VL GYN IFAYGQT +GK+ TMEG DS GI+PR + IF AME
Sbjct: 72 AAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAMEV 131
Query: 125 NHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDF 184
N F I S EIY+ ++DLL D LS+H + + V+
Sbjct: 132 NLEFHIKVSYYEIYMDKIRDLL--------DVSKVNLSVHEDKNRVPYVKGATERFVSSP 183
Query: 185 NQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFDAPERRREKNKIWLVDLGGSE 244
+ G H + I++ + +++ K++LVDL GSE
Sbjct: 184 EDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKKLSGKLYLVDLAGSE 243
Query: 245 RVLKTKARGRRLDEGKAINLSLSALGDVIYALQR-RKRHVPYRNSKLTQVLKDSLGEDSK 303
+V KT A G LDE K IN SLSALG+VI AL K H+PYR+SKLT++L++SLG +++
Sbjct: 244 KVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNAR 303
Query: 304 TLMLVHVSPKEDDLCETICSLNFATRVKSVHLGHEDSNEARDQKEVSMKNLQQKMKKIEE 363
T +++ SP + ET +L+F R K+V N +E++ + +++ +K +E
Sbjct: 304 TTIVICCSPASFNESETKSTLDFGRRAKTV------KNVVCVNEELTAEEWKRRYEKEKE 357
Query: 364 ERLRVRGE 371
+ R++G+
Sbjct: 358 KNARLKGK 365
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 180 bits (457), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 122/348 (35%), Positives = 182/348 (52%), Gaps = 30/348 (8%)
Query: 10 NIRVFCRIRPISMGENFGRLRPVIAKD--SSNVLLK---LADNKS-KNYSFDKVFHPGSS 63
NI+V R+RP ++ E ++ D V ++ LAD S K Y+FD VF +
Sbjct: 18 NIQVVVRVRPFNLAERKASAHSIVESDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 64 QDEVF-SEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEG--TPDS---------PGIVP 111
Q +V+ S V P++ V+ GYNA IFAYGQTGTGK+FTMEG +P+ GI+P
Sbjct: 78 QIDVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFTMEGERSPNEEYCWEEDPLAGIIP 137
Query: 112 RAIEAIFKQAMESNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEP--KG 169
R + IF++ ++ F + S+LEIY L DLL + + L + +P K
Sbjct: 138 RTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLL-----NPSSDVSERLQMFDDPRNKR 192
Query: 170 GIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISI----TCFDA 225
G+ I L I V++ ++ ++ G H + ++I T D
Sbjct: 193 GVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDG 252
Query: 226 PERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPY 285
E + K+ LVDL GSE + ++ A +R E IN SL LG VI AL R HVPY
Sbjct: 253 EELVK-IGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPY 311
Query: 286 RNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSV 333
R SKLT++L+DSLG ++T ++ +SP +L ET+ +L +A R K++
Sbjct: 312 RESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 180 bits (456), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 120/352 (34%), Positives = 181/352 (51%), Gaps = 37/352 (10%)
Query: 11 IRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKL---------ADNKSKNYSFDKVF--- 58
++V RIRP++ E + V+ D++ V+L A + K +++D F
Sbjct: 3 VKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSM 62
Query: 59 -----HPGSSQDEVFSEV-EPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPR 112
+ QD VF + E ++++ DGYNACIFAYGQTG+GKS+TM GT D PG++PR
Sbjct: 63 DESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPR 122
Query: 113 AIEAIFKQAMESNH---AFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKG 169
+F++ + + +F++ S +EIY ++DLL + ++ T L +
Sbjct: 123 LCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQT------LKVREHSVL 176
Query: 170 GIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISI--TCFDAPE 227
G +D L + V + L G + H + +I++ T +D
Sbjct: 177 GPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKS 236
Query: 228 --RRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYAL------QRR 279
+ K+ LVDL GSER KT A G RL EG IN SL+ LG VI AL + +
Sbjct: 237 GTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNK 296
Query: 280 KRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVK 331
+ VPYR+S LT +LKDSLG +SKT M+ VSP D+ ET+ +L +A R K
Sbjct: 297 NKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAK 348
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 175 bits (444), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 120/345 (34%), Positives = 178/345 (51%), Gaps = 23/345 (6%)
Query: 9 GNIRVFCRIRPISMGENFG----RLRPVIAKDSSNVLLKLADNKSKN----YSFDKVFHP 60
GNIRV+CRIRP E+ +++P D N + N+ + + FDK+F
Sbjct: 28 GNIRVYCRIRPPLPHEDDNIEHIKVQPF---DDDNGDQGMTINRGNSQVIPFKFDKIFDQ 84
Query: 61 GSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFK- 119
+ DE+F EV +I+S LDGYN CIFAYGQTG+GK++TM D GIVP I IF
Sbjct: 85 QETNDEIFKEVGQLIQSSLDGYNVCIFAYGQTGSGKTYTMLNPGD--GIVPATINHIFSW 142
Query: 120 --QAMESNHAFRISFSMLEIYLGSLKDLLV----TQPTKATDPLPPCLSIHTEPKGGIEI 173
+ ++++S +EIY ++ DLL +Q + H + I
Sbjct: 143 IDKLAARGWSYKVSCEFIEIYNENIVDLLRSGAPSQENNDRNADSKHEIRHDQELKTTYI 202
Query: 174 DNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFDAPERRREKN 233
N+ T ++ + ++ + + H + I + + + +
Sbjct: 203 TNITTCVLDSRDTVDKVLKRANKLRSTASTAANEHSSRSHSIFIIHLEGKNEGTGEKSQG 262
Query: 234 KIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQR---RKRHVPYRNSKL 290
+ LVDL GSER+ + G RL E ++IN SLS LGDVI+AL +KRH+P+RNSKL
Sbjct: 263 ILNLVDLAGSERLNSSMVVGERLRETQSINKSLSCLGDVIHALNSPDGQKRHIPFRNSKL 322
Query: 291 TQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHL 335
T +L+ SL SKTLM V++SP L ETI SL FA++V + +
Sbjct: 323 TYLLQYSLIGSSKTLMFVNISPAALHLNETINSLRFASKVNNTKM 367
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 174 bits (440), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 121/348 (34%), Positives = 179/348 (51%), Gaps = 30/348 (8%)
Query: 10 NIRVFCRIRPISMGENFGRLRPVIA-----KDSSNVLLKLADNKS-KNYSFDKVFHPGSS 63
NI+V R RP ++ E ++ K+ S LAD S K Y+FD VF +
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 64 QDEVF-SEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEG--TPDS---------PGIVP 111
Q +V+ S V P++ V+ GYN IFAYGQTGTGK+FTMEG +P+ GI+P
Sbjct: 78 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 137
Query: 112 RAIEAIFKQAMESNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEP--KG 169
R + IF++ ++ F + S+LEIY L DLL + + L + +P K
Sbjct: 138 RTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLL-----NPSSDVSERLQMFDDPRNKR 192
Query: 170 GIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISI----TCFDA 225
G+ I L I V++ ++ ++ G H + ++I T D
Sbjct: 193 GVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDG 252
Query: 226 PERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPY 285
E + K+ LVDL GSE + ++ A +R E IN SL LG VI AL R HVPY
Sbjct: 253 EELVK-IGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPY 311
Query: 286 RNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSV 333
R SKLT++L+DSLG ++T ++ +SP +L ET+ +L +A R K++
Sbjct: 312 RESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 174 bits (440), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 121/348 (34%), Positives = 179/348 (51%), Gaps = 30/348 (8%)
Query: 10 NIRVFCRIRPISMGENFGRLRPVIA-----KDSSNVLLKLADNKS-KNYSFDKVFHPGSS 63
NI+V R RP ++ E ++ K+ S LAD S K Y+FD VF +
Sbjct: 17 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 76
Query: 64 QDEVF-SEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEG--TPDS---------PGIVP 111
Q +V+ S V P++ V+ GYN IFAYGQTGTGK+FTMEG +P+ GI+P
Sbjct: 77 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 136
Query: 112 RAIEAIFKQAMESNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEP--KG 169
R + IF++ ++ F + S+LEIY L DLL + + L + +P K
Sbjct: 137 RTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLL-----NPSSDVSERLQMFDDPRNKR 191
Query: 170 GIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISI----TCFDA 225
G+ I L I V++ ++ ++ G H + ++I T D
Sbjct: 192 GVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDG 251
Query: 226 PERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPY 285
E + K+ LVDL GSE + ++ A +R E IN SL LG VI AL R HVPY
Sbjct: 252 EELVK-IGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPY 310
Query: 286 RNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSV 333
R SKLT++L+DSLG ++T ++ +SP +L ET+ +L +A R K++
Sbjct: 311 RESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 358
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 174 bits (440), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 121/348 (34%), Positives = 179/348 (51%), Gaps = 30/348 (8%)
Query: 10 NIRVFCRIRPISMGENFGRLRPVIA-----KDSSNVLLKLADNKS-KNYSFDKVFHPGSS 63
NI+V R RP ++ E ++ K+ S LAD S K Y+FD VF +
Sbjct: 20 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 79
Query: 64 QDEVF-SEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEG--TPDS---------PGIVP 111
Q +V+ S V P++ V+ GYN IFAYGQTGTGK+FTMEG +P+ GI+P
Sbjct: 80 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 139
Query: 112 RAIEAIFKQAMESNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEP--KG 169
R + IF++ ++ F + S+LEIY L DLL + + L + +P K
Sbjct: 140 RTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLL-----NPSSDVSERLQMFDDPRNKR 194
Query: 170 GIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISI----TCFDA 225
G+ I L I V++ ++ ++ G H + ++I T D
Sbjct: 195 GVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDG 254
Query: 226 PERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPY 285
E + K+ LVDL GSE + ++ A +R E IN SL LG VI AL R HVPY
Sbjct: 255 EELVK-IGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPY 313
Query: 286 RNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSV 333
R SKLT++L+DSLG ++T ++ +SP +L ET+ +L +A R K++
Sbjct: 314 RESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 361
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 174 bits (440), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 121/348 (34%), Positives = 179/348 (51%), Gaps = 30/348 (8%)
Query: 10 NIRVFCRIRPISMGENFGRLRPVIA-----KDSSNVLLKLADNKS-KNYSFDKVFHPGSS 63
NI+V R RP ++ E ++ K+ S LAD S K Y+FD VF +
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 64 QDEVF-SEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEG--TPDS---------PGIVP 111
Q +V+ S V P++ V+ GYN IFAYGQTGTGK+FTMEG +P+ GI+P
Sbjct: 78 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEVPLAGIIP 137
Query: 112 RAIEAIFKQAMESNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEP--KG 169
R + IF++ ++ F + S+LEIY L DLL + + L + +P K
Sbjct: 138 RTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLL-----NPSSDVSERLQMFDDPRNKR 192
Query: 170 GIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISI----TCFDA 225
G+ I L I V++ ++ ++ G H + ++I T D
Sbjct: 193 GVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDG 252
Query: 226 PERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPY 285
E + K+ LVDL GSE + ++ A +R E IN SL LG VI AL R HVPY
Sbjct: 253 EELVK-IGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPY 311
Query: 286 RNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSV 333
R SKLT++L+DSLG ++T ++ +SP +L ET+ +L +A R K++
Sbjct: 312 RESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 174 bits (440), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 121/348 (34%), Positives = 179/348 (51%), Gaps = 30/348 (8%)
Query: 10 NIRVFCRIRPISMGENFGRLRPVIA-----KDSSNVLLKLADNKS-KNYSFDKVFHPGSS 63
NI+V R RP ++ E ++ K+ S LAD S K Y+FD VF +
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 64 QDEVF-SEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEG--TPDS---------PGIVP 111
Q +V+ S V P++ V+ GYN IFAYGQTGTGK+FTMEG +P+ GI+P
Sbjct: 78 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 137
Query: 112 RAIEAIFKQAMESNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEP--KG 169
R + IF++ ++ F + S+LEIY L DLL + + L + +P K
Sbjct: 138 RTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLL-----NPSSDVSERLQMFDDPRNKR 192
Query: 170 GIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISI----TCFDA 225
G+ I L I V++ ++ ++ G H + ++I T D
Sbjct: 193 GVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDG 252
Query: 226 PERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPY 285
E + K+ LVDL GSE + ++ A +R E IN SL LG VI AL R HVPY
Sbjct: 253 EELVK-IGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPY 311
Query: 286 RNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSV 333
R SKLT++L+DSLG ++T ++ +SP +L ET+ +L +A R K++
Sbjct: 312 RESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 173 bits (439), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 121/348 (34%), Positives = 179/348 (51%), Gaps = 30/348 (8%)
Query: 10 NIRVFCRIRPISMGENFGRLRPVIA-----KDSSNVLLKLADNKS-KNYSFDKVFHPGSS 63
NI+V R RP ++ E ++ K+ S LAD S K Y+FD VF +
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 77
Query: 64 QDEVF-SEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEG--TPDSP---------GIVP 111
Q +V+ S V P++ V+ GYN IFAYGQTGTGK+FTMEG +P+ GI+P
Sbjct: 78 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLDGIIP 137
Query: 112 RAIEAIFKQAMESNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEP--KG 169
R + IF++ ++ F + S+LEIY L DLL + + L + +P K
Sbjct: 138 RTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLL-----NPSSDVSERLQMFDDPRNKR 192
Query: 170 GIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISI----TCFDA 225
G+ I L I V++ ++ ++ G H + ++I T D
Sbjct: 193 GVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDG 252
Query: 226 PERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPY 285
E + K+ LVDL GSE + ++ A +R E IN SL LG VI AL R HVPY
Sbjct: 253 EELVK-IGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPY 311
Query: 286 RNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSV 333
R SKLT++L+DSLG ++T ++ +SP +L ET+ +L +A R K++
Sbjct: 312 RESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 173 bits (439), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 121/348 (34%), Positives = 179/348 (51%), Gaps = 30/348 (8%)
Query: 10 NIRVFCRIRPISMGENFGRLRPVIA-----KDSSNVLLKLADNKS-KNYSFDKVFHPGSS 63
NI+V R RP ++ E ++ K+ S LAD S K Y+FD VF +
Sbjct: 9 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 68
Query: 64 QDEVF-SEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEG--TPDS---------PGIVP 111
Q +V+ S V P++ V+ GYN IFAYGQTGTGK+FTMEG +P+ GI+P
Sbjct: 69 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 128
Query: 112 RAIEAIFKQAMESNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEP--KG 169
R + IF++ ++ F + S+LEIY L DLL + + L + +P K
Sbjct: 129 RTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLL-----NPSSDVSERLQMFDDPRNKR 183
Query: 170 GIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISI----TCFDA 225
G+ I L I V++ ++ ++ G H + ++I T D
Sbjct: 184 GVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDG 243
Query: 226 PERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPY 285
E + K+ LVDL GSE + ++ A +R E IN SL LG VI AL R HVPY
Sbjct: 244 EELVK-IGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPY 302
Query: 286 RNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSV 333
R SKLT++L+DSLG ++T ++ +SP +L ET+ +L +A R K++
Sbjct: 303 RESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 350
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 173 bits (439), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 117/340 (34%), Positives = 172/340 (50%), Gaps = 25/340 (7%)
Query: 10 NIRVFCRIRPISMGENFGRLRPVIAKD--SSNVLL---------KLADNKSKNYSFDKVF 58
NI+V R RP++ E +I D S+ V++ A + ++FD V+
Sbjct: 5 NIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVY 64
Query: 59 HPGSSQDEVF-SEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAI 117
S +F + +P+I +VL+G+N+ IFAYGQTG GK++TM G + PG +P + + +
Sbjct: 65 DQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHL 124
Query: 118 FK--QAMESNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGIEIDN 175
F + SN F + S LE+Y ++DL+ K LP + + GI +D
Sbjct: 125 FDAINSSSSNQNFLVIGSYLELYNEEIRDLI-----KNNTKLP----LKEDKTRGIYVDG 175
Query: 176 LVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFDAPERRR--EKN 233
L +V + L G H + + I C + E +
Sbjct: 176 LSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVIRVG 235
Query: 234 KIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQV 293
K+ LVDL GSER KT A G L EG INLSLSALG VI L H+PYR+SKLT++
Sbjct: 236 KLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGATHIPYRDSKLTRL 295
Query: 294 LKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSV 333
L+DSLG +SKTLM ++SP + ET+ +L +A R K +
Sbjct: 296 LQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQI 335
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 172 bits (437), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 121/348 (34%), Positives = 179/348 (51%), Gaps = 30/348 (8%)
Query: 10 NIRVFCRIRPISMGENFGRLRPVIA-----KDSSNVLLKLADNKS-KNYSFDKVFHPGSS 63
NI+V R RP ++ E ++ K+ S LAD S K Y+FD VF +
Sbjct: 3 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTK 62
Query: 64 QDEVF-SEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEG--TPDS---------PGIVP 111
Q +V+ S V P++ V+ GYN IFAYGQTGTGK+FTMEG +P+ GI+P
Sbjct: 63 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 122
Query: 112 RAIEAIFKQAMESNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEP--KG 169
R + IF++ ++ F + S+LEIY L DLL + + L + +P K
Sbjct: 123 RTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLL-----NPSSDVSERLQMFDDPRNKR 177
Query: 170 GIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISI----TCFDA 225
G+ I L I V++ ++ ++ G H + ++I T D
Sbjct: 178 GVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDG 237
Query: 226 PERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPY 285
E + K+ LVDL GSE + ++ A +R E IN SL LG VI AL R HVPY
Sbjct: 238 EELVK-IGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPY 296
Query: 286 RNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSV 333
R SKLT++L+DSLG ++T ++ +SP +L ET+ +L +A R K++
Sbjct: 297 RESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 344
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 171 bits (434), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 117/362 (32%), Positives = 178/362 (49%), Gaps = 46/362 (12%)
Query: 11 IRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADNKS------KNYSFDKVFHPGSSQ 64
++V R RP+S E ++ D + L + ++ K ++FD V+ S Q
Sbjct: 23 LKVVARCRPLSRKEEAAGHEQILTMDVKLGQVTLRNPRAAPGELPKTFTFDAVYDASSKQ 82
Query: 65 DEVFSE-VEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGT---PDSPGIVPRAIEAIFKQ 120
+++ E V P+I SVL G+N +FAYGQTGTGK++TM+GT P+ G++P A E IF
Sbjct: 83 ADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTMQGTWVEPELRGVIPNAFEHIFTH 142
Query: 121 AMES-NHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGIEIDNLVTI 179
S N + + S LEIY ++DLL +P K L + P+ G+ I +L +
Sbjct: 143 ISRSQNQQYLVRASYLEIYQEEIRDLLSKEPGKR-------LELKENPETGVYIKDLSSF 195
Query: 180 QVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFDAPERRREK---NKIW 236
+ + + LG + H + I++ C + ++ K+
Sbjct: 196 VTKNVKEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFIITVECSERGSDGQDHIRVGKLN 255
Query: 237 LVDLGGSERVLKT---KARG---------------------RRLDEGKAINLSLSALGDV 272
LVDL GSER K A G R E INLSLSALG+V
Sbjct: 256 LVDLAGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGAGGERPKEASKINLSLSALGNV 315
Query: 273 IYALQ-RRKRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVK 331
I AL R H+PYR+SKLT++L+DSLG ++KT+M+ + P E++ +L FA R K
Sbjct: 316 IAALAGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDESLSTLRFANRAK 375
Query: 332 SV 333
++
Sbjct: 376 NI 377
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 170 bits (430), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 120/348 (34%), Positives = 177/348 (50%), Gaps = 28/348 (8%)
Query: 9 GNIRVFCRIRPI--SMGENFGRLRPVIAKDSSNVLLKLADNKSKN------YSFDKVFHP 60
GNIRV+CRIRP ++ + L V D ++ + + K +N + FDK+F
Sbjct: 3 GNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQ 62
Query: 61 GSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIF-- 118
+ +VF EV +++S LDGYN CIFAYGQTG+GK+FTM D GI+P I IF
Sbjct: 63 QDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD--GIIPSTISHIFNW 120
Query: 119 -KQAMESNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSI-------HTEPKGG 170
+ ++++ +EIY ++ DLL + D SI H +
Sbjct: 121 INKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDT-----SIGLKHEIRHDQETKT 175
Query: 171 IEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFDAPERRR 230
I N+ + ++ + + + H + I ++ +A
Sbjct: 176 TTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKTGAH 235
Query: 231 EKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQR---RKRHVPYRN 287
+ LVDL GSER+ ++ G RL E + IN SLS LGDVI+AL + KRH+P+RN
Sbjct: 236 SYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRN 295
Query: 288 SKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHL 335
SKLT +L+ SL DSKTLM V++SP + ET+ SL FA++V S L
Sbjct: 296 SKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 343
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 169 bits (429), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 120/348 (34%), Positives = 177/348 (50%), Gaps = 28/348 (8%)
Query: 9 GNIRVFCRIRPI--SMGENFGRLRPVIAKDSSNVLLKLADNKSKN------YSFDKVFHP 60
GNIRV+CRIRP ++ + L V D ++ + + K +N + FDK+F
Sbjct: 2 GNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQ 61
Query: 61 GSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIF-- 118
+ +VF EV +++S LDGYN CIFAYGQTG+GK+FTM D GI+P I IF
Sbjct: 62 QDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD--GIIPSTISHIFNW 119
Query: 119 -KQAMESNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSI-------HTEPKGG 170
+ ++++ +EIY ++ DLL + D SI H +
Sbjct: 120 INKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDT-----SIGLKHEIRHDQETKT 174
Query: 171 IEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFDAPERRR 230
I N+ + ++ + + + H + I ++ +A
Sbjct: 175 TTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAH 234
Query: 231 EKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQR---RKRHVPYRN 287
+ LVDL GSER+ ++ G RL E + IN SLS LGDVI+AL + KRH+P+RN
Sbjct: 235 SYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRN 294
Query: 288 SKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHL 335
SKLT +L+ SL DSKTLM V++SP + ET+ SL FA++V S L
Sbjct: 295 SKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 342
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 169 bits (429), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 120/350 (34%), Positives = 178/350 (50%), Gaps = 28/350 (8%)
Query: 7 IAGNIRVFCRIRPI--SMGENFGRLRPVIAKDSSNVLLKLADNKSKN------YSFDKVF 58
+ GNIRV+CRIRP ++ + L V D ++ + + K +N + FDK+F
Sbjct: 12 LRGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIF 71
Query: 59 HPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIF 118
+ +VF EV +++S LDGYN CIFAYGQTG+GK+FTM D GI+P I IF
Sbjct: 72 DQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD--GIIPSTISHIF 129
Query: 119 ---KQAMESNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSI-------HTEPK 168
+ ++++ +EIY ++ DLL + D SI H +
Sbjct: 130 NWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDT-----SIGLKHEIRHDQET 184
Query: 169 GGIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFDAPER 228
I N+ + ++ + + + H + I ++ +A
Sbjct: 185 KTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTG 244
Query: 229 RREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQR---RKRHVPY 285
+ LVDL GSER+ ++ G RL E + IN SLS LGDVI+AL + KRH+P+
Sbjct: 245 AHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPF 304
Query: 286 RNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHL 335
RNSKLT +L+ SL DSKTLM V++SP + ET+ SL FA++V S L
Sbjct: 305 RNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 354
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 167 bits (424), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 118/344 (34%), Positives = 177/344 (51%), Gaps = 20/344 (5%)
Query: 9 GNIRVFCRIRPI--SMGENFGRLRPVIAKDSSNVLLKLADNKSKN------YSFDKVFHP 60
GNIRV+ RIRP ++ + L V D ++ + + K +N + FDK+F
Sbjct: 59 GNIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQ 118
Query: 61 GSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFK- 119
+ +VF EV +++S LDGYN IFAYGQTG+GK+FTM D GI+P I IF
Sbjct: 119 QDTNVDVFKEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNPGD--GIIPSTISHIFNW 176
Query: 120 --QAMESNHAFRISFSMLEIYLGSLKDLLVTQPTKATDP---LPPCLSIHTEPKGGIEID 174
+ ++++ +EIY ++ DLL + D L + H + I
Sbjct: 177 INKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIR-HDQETKTTTIT 235
Query: 175 NLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFDAPERRREKNK 234
N+ ++++ + + + H + I ++ +A
Sbjct: 236 NVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGT 295
Query: 235 IWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQR---RKRHVPYRNSKLT 291
+ LVDL GSER+ ++ G RL E + IN SLSALGDVI+AL + KRH+P+RNSKLT
Sbjct: 296 LNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLT 355
Query: 292 QVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHL 335
+L+ SL DSKTLM V++SP + ET+ SL FA++V S L
Sbjct: 356 YLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 399
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 113/359 (31%), Positives = 184/359 (51%), Gaps = 23/359 (6%)
Query: 11 IRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADNKSKN----YSFDKVFHPGSSQDE 66
+RV R+RP G G P + + L++A+ ++ Y FD + S+Q +
Sbjct: 23 VRVAVRLRPFVDG-TAGASDPPCVRGMDSCSLEIANWRNHQETLKYQFDAFYGERSTQQD 81
Query: 67 VFS-EVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAMESN 125
+++ V+P+++ +L+G NA + AYG TG GK+ TM G+P+ PG++PRA+ + + E
Sbjct: 82 IYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQLTREEG 141
Query: 126 -----HAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQ 180
A ++ S LEIY + DLL DP L I + +G I I L
Sbjct: 142 AEGRPWALSVTMSYLEIYQEKVLDLL--------DPASGDLVIREDCRGNILIPGLSQKP 193
Query: 181 VNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFD--APERRREKNKIWLV 238
++ F R + R H ++ + + + AP R+RE K++L+
Sbjct: 194 ISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFRQRE-GKLYLI 252
Query: 239 DLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVLKDSL 298
DL GSE +T +G RL E AIN SL LG V+ AL + VPYR+SKLT++L+DSL
Sbjct: 253 DLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDSKLTRLLQDSL 312
Query: 299 GEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHLGHEDSNEARDQKEVSMKNLQQK 357
G + ++++ +++P+ +T+ +LNFA R K V + +NE+ + L QK
Sbjct: 313 GGSAHSILIANIAPERRFYLDTVSALNFAARSKEV-INRPFTNESLQPHALGPVKLSQK 370
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 119/348 (34%), Positives = 176/348 (50%), Gaps = 28/348 (8%)
Query: 9 GNIRVFCRIRPI--SMGENFGRLRPVIAKDSSNVLLKLADNKSKN------YSFDKVFHP 60
GNIRV+CRIRP ++ + L V D ++ + + K +N + FDK+F
Sbjct: 3 GNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQ 62
Query: 61 GSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIF-- 118
+ +VF EV +++S LDGYN CIFAYGQTG+GK+FTM D GI+P I IF
Sbjct: 63 QDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD--GIIPSTISHIFNW 120
Query: 119 -KQAMESNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSI-------HTEPKGG 170
+ ++++ +EIY ++ DLL + D SI H +
Sbjct: 121 INKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDT-----SIGLKHEIRHDQETKT 175
Query: 171 IEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFDAPERRR 230
I N+ + ++ + + + H + I ++ +A
Sbjct: 176 TTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAH 235
Query: 231 EKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQR---RKRHVPYRN 287
+ LVDL GS R+ ++ G RL E + IN SLS LGDVI+AL + KRH+P+RN
Sbjct: 236 SYGTLNLVDLAGSARINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRN 295
Query: 288 SKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHL 335
SKLT +L+ SL DSKTLM V++SP + ET+ SL FA++V S L
Sbjct: 296 SKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 343
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 167 bits (423), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 111/326 (34%), Positives = 161/326 (49%), Gaps = 50/326 (15%)
Query: 50 KNYSFDKVFHPGSSQDEVFSEVEPVIKSV--------LDGYNACIFAYGQTGTGKSFTME 101
K+++FDK F +++DE ++ E V S+ +GY+ CIFAYGQTG+GKS+TM
Sbjct: 96 KSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMM 155
Query: 102 GTPDSPGIVPRAIEAIFKQAMES-----NHAFRISFSMLEIYLGSLKDLLVTQPTKATDP 156
GTPD PG++PR E +F++ + N ++ + S E+Y ++DLL P P
Sbjct: 156 GTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLA--PVVPNKP 213
Query: 157 LPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMI 216
P L + P G + +L + V + +R R+G H +
Sbjct: 214 -PYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVF 272
Query: 217 RISITCF-------DAPERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSAL 269
I + D ER ++I LVDL GSER T+A G+RL EG IN SL+ L
Sbjct: 273 TIMLKQIHHDLETDDTTER---SSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTL 329
Query: 270 GDVIYALQRRKRH----------------------VPYRNSKLTQVLKDSLGEDSKTLML 307
G VI AL K VPYR+S LT +LKDSLG +SKT M+
Sbjct: 330 GRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMI 389
Query: 308 VHVSPKEDDLCETICSLNFATRVKSV 333
+SP + D ET+ +L +A + K +
Sbjct: 390 ACISPTDYD--ETLSTLRYADQAKRI 413
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 167 bits (422), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 119/348 (34%), Positives = 176/348 (50%), Gaps = 28/348 (8%)
Query: 9 GNIRVFCRIRPI--SMGENFGRLRPVIAKDSSNVLLKLADNKSKN------YSFDKVFHP 60
GNIRV+CRIRP ++ + L V D ++ + + K +N + FDK+F
Sbjct: 3 GNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQ 62
Query: 61 GSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIF-- 118
+ +VF EV +++S LDGYN CIFAYGQTG+GK+FTM D GI+P I IF
Sbjct: 63 QDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD--GIIPSTISHIFNW 120
Query: 119 -KQAMESNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSI-------HTEPKGG 170
+ ++++ +EIY ++ DLL + D SI H +
Sbjct: 121 INKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDT-----SIGLKHEIRHDQETKT 175
Query: 171 IEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFDAPERRR 230
I N+ + ++ + + + H + I ++ +A
Sbjct: 176 TTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAH 235
Query: 231 EKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQR---RKRHVPYRN 287
+ LVDL GSER+ ++ G RL E + I SLS LGDVI+AL + KRH+P+RN
Sbjct: 236 SYGTLNLVDLAGSERINVSQVVGDRLRETQNIKKSLSCLGDVIHALGQPDSTKRHIPFRN 295
Query: 288 SKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHL 335
SKLT +L+ SL DSKTLM V++SP + ET+ SL FA++V S L
Sbjct: 296 SKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 343
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 161 bits (407), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 111/340 (32%), Positives = 177/340 (52%), Gaps = 27/340 (7%)
Query: 11 IRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADNKSKNYSFDKVFHPGSSQDEVFSE 70
+RV R+RP+ E + + + L ++ + +++ F V + Q+ V+
Sbjct: 13 VRVALRVRPLLPKELLHGHQSCLQVEPG--LGRVTLGRDRHFGFHVVLAEDAGQEAVYQA 70
Query: 71 -VEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTP------DSPGIVPRAIEAIFKQAME 123
V+P++++ +G+NA +FAYGQTG+GK++TM D GIVPRA+ FK E
Sbjct: 71 CVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDE 130
Query: 124 SNHA-FRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQVN 182
++ + S LE+Y +DLL T + D + + + +G + + + + V
Sbjct: 131 NDLLDCLVHVSYLEVYKEEFRDLLEVG-TASRD-----IQLREDERGNVVLCGVKEVDVE 184
Query: 183 DFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFD-APER-------RREKNK 234
++ L L +G H + +++ AP R + +K
Sbjct: 185 GLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLLVSK 244
Query: 235 IWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYAL---QRRKRHVPYRNSKLT 291
VDL GSERVLKT + G RL E IN SL ALG+VI AL QRR H+PYR+SK+T
Sbjct: 245 FHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKIT 304
Query: 292 QVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVK 331
++LKDSLG ++KT+M+ VSP D ET+ +LN+A+R +
Sbjct: 305 RILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 160 bits (406), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 121/346 (34%), Positives = 173/346 (50%), Gaps = 28/346 (8%)
Query: 10 NIRVFCRIRPISMGENFGRLRPVI--AKDSSNVLLKLADNK-SKNYSFDKVFHPGSSQDE 66
NI+V+ R+RP++ E R V+ V D+K +K ++FD+ F P S Q +
Sbjct: 24 NIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLTKKFTFDRSFGPESKQCD 83
Query: 67 VFSEV-EPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSP-----------GIVPRAI 114
V+S V P+I+ VL+GYN +FAYGQTGTGK+ TM G + GI+PRA+
Sbjct: 84 VYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRAL 143
Query: 115 EAIFKQ--AMESNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGIE 172
+F + ME + RIS+ LE+Y L DLL T T + KG +
Sbjct: 144 SHLFDELRMMEVEYTMRISY--LELYNEELCDLLSTDDTTKIRIFDD-----STKKGSVI 196
Query: 173 IDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFD---APERR 229
I L I V+ + +L G H + I + + E
Sbjct: 197 IQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEGEDM 256
Query: 230 REKNKIWLVDLGGSERVLKT-KARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNS 288
+ K+ LVDL GSE V K +G R+ E IN SL LG VI AL R HVPYR S
Sbjct: 257 LKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRAPHVPYRES 316
Query: 289 KLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSVH 334
KLT++L++SLG +KT ++ +SP D+ ET+ +L +A R K++
Sbjct: 317 KLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQ 362
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 158 bits (399), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 111/333 (33%), Positives = 174/333 (52%), Gaps = 20/333 (6%)
Query: 9 GNIRVFCRIRPI-SMGENFGRLRPVIAKDSSNVLLKLADNKSKNYSFDKVFHPGSSQDEV 67
G + V R+RP+ S E+ G V K +NV+ ++ + SK+++FD+VFH + V
Sbjct: 4 GAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQV--DGSKSFNFDRVFHGNETTKNV 61
Query: 68 FSEVE-PVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAME-SN 125
+ E+ P+I S + GYN IFAYGQT +GK++TM G+ D G++PRAI IF++ + +
Sbjct: 62 YEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFPD 121
Query: 126 HAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFN 185
F + S +EIY ++ DLL T + P L I + + + +L V
Sbjct: 122 REFLLRVSYMEIYNETITDLLC-----GTQKMKP-LIIREDVNRNVYVADLTEEVVYTSE 175
Query: 186 QALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFDAPERRR-----EKNKIWLVDL 240
AL+ G + H + R+ + + E + + + LVDL
Sbjct: 176 MALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVDL 235
Query: 241 GGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQ--RRKRHVPYRNSKLTQVLKDSL 298
GSER +T A G RL EG IN SL LG VI L + + YR+SKLT++L++SL
Sbjct: 236 AGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSL 295
Query: 299 GEDSKTLMLVHVSPKEDDLCETICSLNFATRVK 331
G ++KT ++ ++P D ET+ +L FA+ K
Sbjct: 296 GGNAKTRIICTITPVSFD--ETLTALQFASTAK 326
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 155 bits (393), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 108/354 (30%), Positives = 170/354 (48%), Gaps = 39/354 (11%)
Query: 10 NIRVFCRIRPISMGENFGRLRPVI---------------------AKDSSNVLLKLADNK 48
+++V R+RP + E V+ K ++N + NK
Sbjct: 11 HMKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNK 70
Query: 49 SKNYSFDKVFHPGSSQDEVFSE-VEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSP 107
+ FD VF S+Q EVF +P+++S L+GYN + AYG TG GK+ TM G+ D P
Sbjct: 71 DLKFVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEP 130
Query: 108 GIVPRAIEAIFK--QAMESNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHT 165
G++ + ++K ++ + S LE+Y ++DLLV + P L++
Sbjct: 131 GVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIRDLLVN-----SGP----LAVRE 181
Query: 166 EPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFDA 225
+ + G+ + L Q + L L G + H + +I + D
Sbjct: 182 DTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDK 241
Query: 226 PERRREKNKIW---LVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYAL---QRR 279
+ +I L+DL GSER + A+G R EG IN SL ALG+VI AL +R+
Sbjct: 242 TASINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRK 301
Query: 280 KRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSV 333
+H+PYRNSKLT++LKDSLG + +T+M+ VSP +T +L +A R K +
Sbjct: 302 NQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 153 bits (386), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 118/341 (34%), Positives = 171/341 (50%), Gaps = 25/341 (7%)
Query: 11 IRVFCRIRPISMGENFGR--LRPVIAKDSSNVLLK------LADNKSKNYSF--DKVFHP 60
+ F R++P ++F +R K S ++ LK + +N+ ++SF D V H
Sbjct: 26 VHAFVRVKPT---DDFAHEMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLHD 82
Query: 61 GSSQDEVFSEV-EPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSP---GIVPRAIEA 116
+SQD V+ V + V+ LDGYN I YGQTG GK++TM G ++ GI+PRA++
Sbjct: 83 -ASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQ 141
Query: 117 IFKQAMES-NHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGIEIDN 175
+F+ E HA + S LEIY SL DLL T P P ++I P+G + I
Sbjct: 142 VFRMIEERPTHAITVRVSYLEIYNESLFDLLSTLPYVGPSVTP--MTIVENPQG-VFIKG 198
Query: 176 LVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFD--APERRREKN 233
L + A L G HC+ I + E + +
Sbjct: 199 LSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSEEKYITS 258
Query: 234 KIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKR-HVPYRNSKLTQ 292
KI LVDL GSER+ K+ + G+ L E IN SLS L I AL +KR H+P+R KLT
Sbjct: 259 KINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTH 318
Query: 293 VLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSV 333
LKDSLG + +++ ++ + L ET+ SL FA+R+K V
Sbjct: 319 ALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 359
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 152 bits (384), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 108/340 (31%), Positives = 175/340 (51%), Gaps = 27/340 (7%)
Query: 11 IRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADNKSKNYSFDKVFHPGSSQDEVFSE 70
+RV R+RP+ E + + + L ++ + +++ F V + Q+ V+
Sbjct: 13 VRVALRVRPLLPKELLHGHQSCLQVEPG--LGRVTLGRDRHFGFHVVLAEDAGQEAVYQA 70
Query: 71 -VEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTP------DSPGIVPRAIEAIFKQAME 123
V+P++++ +G+NA +FAYGQTG+GK++TM D GIVPRA+ FK E
Sbjct: 71 CVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDE 130
Query: 124 SNHA-FRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQVN 182
++ + S LE+Y +DLL T + D + + + +G + + + + V
Sbjct: 131 NDLLDCLVHVSYLEVYKEEFRDLLEVG-TASRD-----IQLREDERGNVVLCGVKEVDVE 184
Query: 183 DFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFD-APER-------RREKNK 234
++ L L +G H + +++ AP R + +K
Sbjct: 185 GLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLKQRGRAPSRLPRPAPGQLLVSK 244
Query: 235 IWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYAL---QRRKRHVPYRNSKLT 291
VDL GSERVLKT + G E IN SL ALG+VI AL QRR ++PYR+SK+T
Sbjct: 245 FHFVDLAGSERVLKTGSTGELRKESIQINSSLLALGNVISALGDPQRRGSNIPYRDSKIT 304
Query: 292 QVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVK 331
++LKDSLG ++KT+M+ VSP D ET+ +LN+A+R +
Sbjct: 305 RILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 109/362 (30%), Positives = 169/362 (46%), Gaps = 46/362 (12%)
Query: 8 AGNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLL---KLADNKSKNYSFDKVFHPGSS- 63
+++V R+RP + E + +I S + K K++SFD + +S
Sbjct: 3 GASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSP 62
Query: 64 -------QDEVFSEV-EPVIKSVLDGYNACIFAYGQTGTGKSFTMEGT--PDSPGIVPRA 113
Q +V+ ++ E +++ +GYN CIFAYGQTG GKS+TM G D GI+P+
Sbjct: 63 EDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQL 122
Query: 114 IEAIFKQAMES---NHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGG 170
E +F + ++ N ++ + S +EIY ++DLL P + L + P G
Sbjct: 123 CEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLL--NPKNKGN-----LRVREHPLLG 175
Query: 171 IEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFDAPERRR 230
+++L + V +N L G + H + I F
Sbjct: 176 PYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNI---IFTQKRHDA 232
Query: 231 EKN-------KIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKR-- 281
E N KI LVDL GSER T A+G RL EG IN SL+ LG VI AL
Sbjct: 233 ETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGP 292
Query: 282 ----------HVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVK 331
+PYR+S LT +L+++LG +S+T M+ +SP + + ET+ +L +A R K
Sbjct: 293 NKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAK 352
Query: 332 SV 333
+
Sbjct: 353 QI 354
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 109/362 (30%), Positives = 169/362 (46%), Gaps = 46/362 (12%)
Query: 8 AGNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLL---KLADNKSKNYSFDKVFHPGSS- 63
+++V R+RP + E + +I S + K K++SFD + +S
Sbjct: 19 GASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSP 78
Query: 64 -------QDEVFSEV-EPVIKSVLDGYNACIFAYGQTGTGKSFTMEGT--PDSPGIVPRA 113
Q +V+ ++ E +++ +GYN CIFAYGQTG GKS+TM G D GI+P+
Sbjct: 79 EDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQL 138
Query: 114 IEAIFKQAMES---NHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGG 170
E +F + ++ N ++ + S +EIY ++DLL P + L + P G
Sbjct: 139 CEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLL--NPKNKGN-----LRVREHPLLG 191
Query: 171 IEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFDAPERRR 230
+++L + V +N L G + H + I F
Sbjct: 192 PYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNI---IFTQKRHDA 248
Query: 231 EKN-------KIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKR-- 281
E N KI LVDL GSER T A+G RL EG IN SL+ LG VI AL
Sbjct: 249 ETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGP 308
Query: 282 ----------HVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVK 331
+PYR+S LT +L+++LG +S+T M+ +SP + + ET+ +L +A R K
Sbjct: 309 NKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAK 368
Query: 332 SV 333
+
Sbjct: 369 QI 370
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 147 bits (371), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 109/362 (30%), Positives = 169/362 (46%), Gaps = 46/362 (12%)
Query: 8 AGNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLL---KLADNKSKNYSFDKVFHPGSS- 63
+++V R+RP + E + +I S + K K++SFD + +S
Sbjct: 3 GASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSP 62
Query: 64 -------QDEVFSEV-EPVIKSVLDGYNACIFAYGQTGTGKSFTMEGT--PDSPGIVPRA 113
Q +V+ ++ E +++ +GYN CIFAYGQTG GKS+TM G D GI+P+
Sbjct: 63 EDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQL 122
Query: 114 IEAIFKQAMES---NHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGG 170
E +F + ++ N ++ + S +EIY ++DLL P + L + P G
Sbjct: 123 CEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLL--NPKNKGN-----LRVREHPLLG 175
Query: 171 IEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFDAPERRR 230
+++L + V +N L G + H + I F
Sbjct: 176 PYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNI---IFTQKRHDA 232
Query: 231 EKN-------KIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKR-- 281
E N KI LVDL GSER T A+G RL EG IN SL+ LG VI AL
Sbjct: 233 ETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGP 292
Query: 282 ----------HVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVK 331
+PYR+S LT +L+++LG +S+T M+ +SP + + ET+ +L +A R K
Sbjct: 293 NKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAK 352
Query: 332 SV 333
+
Sbjct: 353 QI 354
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 147 bits (370), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 109/362 (30%), Positives = 169/362 (46%), Gaps = 46/362 (12%)
Query: 8 AGNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLL---KLADNKSKNYSFDKVFHPGSS- 63
+++V R+RP + E + +I S + K K++SFD + +S
Sbjct: 3 GASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSP 62
Query: 64 -------QDEVFSEV-EPVIKSVLDGYNACIFAYGQTGTGKSFTMEGT--PDSPGIVPRA 113
Q +V+ ++ E +++ +GYN CIFAYGQTG GKS+TM G D GI+P+
Sbjct: 63 EDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQL 122
Query: 114 IEAIFKQAMES---NHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGG 170
E +F + ++ N ++ + S +EIY ++DLL P + L + P G
Sbjct: 123 CEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLL--NPKNKGN-----LRVREHPLLG 175
Query: 171 IEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFDAPERRR 230
+++L + V +N L G + H + I F
Sbjct: 176 PYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNI---IFTQKRHDA 232
Query: 231 EKN-------KIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKR-- 281
E N KI LVDL GSER T A+G RL EG IN SL+ LG VI AL
Sbjct: 233 ETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGP 292
Query: 282 ----------HVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVK 331
+PYR+S LT +L+++LG +S+T M+ +SP + + ET+ +L +A R K
Sbjct: 293 NKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAK 352
Query: 332 SV 333
+
Sbjct: 353 QI 354
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/299 (30%), Positives = 140/299 (46%), Gaps = 39/299 (13%)
Query: 52 YSFDKVFHPGSSQDEVFSE-VEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTP------ 104
+ FD F SQDE++ + P++ +L+G+ AYGQTGTGKS++M TP
Sbjct: 63 FHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILP 122
Query: 105 DSPGIVPRAIEAIFKQ--AMESNH--AFRISFSMLEIYLGSLKDLLVTQP----TKATDP 156
+ GI+PRA+ IF++ A + N+ A ++ S +EIY DLL + P A
Sbjct: 123 EHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPHMPMVAARCQ 182
Query: 157 LPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMI 216
CL +H++ D + L L G R H ++
Sbjct: 183 RCTCLPLHSQA---------------DLHHILEL---GTRNRRVRPTNMNSNSSRSHAIV 224
Query: 217 RISITCFDAPERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYAL 276
I + + + +++ +VDL GSE V +T G EG INL L ++ V+ ++
Sbjct: 225 TIHV------KSKTHHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSM 278
Query: 277 QRRKRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHL 335
+PYR+S LT VL+ SL S L +SP + DL ET+ +L F T K+ L
Sbjct: 279 AAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKAAAL 337
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/299 (30%), Positives = 140/299 (46%), Gaps = 39/299 (13%)
Query: 52 YSFDKVFHPGSSQDEVFSE-VEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTP------ 104
+ FD F SQDE++ + P++ +L+G+ AYGQTGTGKS++M TP
Sbjct: 63 FHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILP 122
Query: 105 DSPGIVPRAIEAIFKQ--AMESNH--AFRISFSMLEIYLGSLKDLLVTQP----TKATDP 156
+ GI+PRA+ IF++ A + N+ A ++ S +EIY DLL + P A
Sbjct: 123 EHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPHMPMVAARCQ 182
Query: 157 LPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMI 216
CL +H++ D + L L G R H ++
Sbjct: 183 RCTCLPLHSQA---------------DLHHILEL---GTRNRRVRPTNMNSNSSRSHAIV 224
Query: 217 RISITCFDAPERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYAL 276
I + + + +++ +VDL GSE V +T G EG INL L ++ V+ ++
Sbjct: 225 TIHV------KSKTHHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSM 278
Query: 277 QRRKRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHL 335
+PYR+S LT VL+ SL S L +SP + DL ET+ +L F T K + L
Sbjct: 279 AAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKKLRL 337
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 116 bits (290), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 95/309 (30%), Positives = 144/309 (46%), Gaps = 36/309 (11%)
Query: 41 LLKLADNKSKNYSFDKVFHPGSSQDEVFS-EVEPVIKSVLDGYNACIFAYGQTGTGKSFT 99
L K +N++ + FD F +S + V+ P+++++ +G A FAYGQTG+GK+ T
Sbjct: 94 LTKYLENQA--FCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHT 151
Query: 100 MEGTPDSPGIVPRAIEAIFKQAMESNHAF-------------RISFSMLEIYLGSLKDLL 146
M G D G A + I+ AM S F + + EIY G L DLL
Sbjct: 152 MGG--DLSGKAQNASKGIY--AMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLL 207
Query: 147 VTQPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXX 206
+ L + + K +++ L VN + +++ +G
Sbjct: 208 NKKAK---------LRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFAN 258
Query: 207 XXXXXXHCMIRISITCFDAPERRREKNKIWLVDLGGSERVLKTKARGRRLD-EGKAINLS 265
H +I + + R K LVDL G+ER T + R+ EG IN S
Sbjct: 259 SNSSRSHACFQIILR-----AKGRMHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKS 313
Query: 266 LSALGDVIYALQRRKRHVPYRNSKLTQVLKDS-LGEDSKTLMLVHVSPKEDDLCETICSL 324
L AL + I AL + K H P+R SKLTQVL+DS +GE+S+T M+ +SP T+ +L
Sbjct: 314 LLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTL 373
Query: 325 NFATRVKSV 333
+A RVK +
Sbjct: 374 RYADRVKEL 382
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 113 bits (282), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 92/300 (30%), Positives = 143/300 (47%), Gaps = 30/300 (10%)
Query: 48 KSKNYSFDKVFHPGSSQDEVFS-EVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPD- 105
+++ + FD F + + V+ P+++++ + A FAYGQTG+GK+ TM G
Sbjct: 137 ENQTFRFDYAFDDSAPNEMVYRFTARPLVETIFERGMATCFAYGQTGSGKTHTMGGDFSG 196
Query: 106 -----SPGIVPRAIEAIFKQAMESNHA---FRISFSMLEIYLGSLKDLLVTQPTKATDPL 157
S GI A +F + N+ ++ + EIY G + DLL + TK
Sbjct: 197 KNQDCSKGIYALAARDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLL-NRKTK----- 250
Query: 158 PPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIR 217
L + + K +++ L +V L+L +G H + +
Sbjct: 251 ---LRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQ 307
Query: 218 ISITCFDAPERRREK--NKIWLVDLGGSERVLKTKARGRRLD-EGKAINLSLSALGDVIY 274
I + RR+ K K L+DL G+ER T + R+ EG IN SL AL + I
Sbjct: 308 IIL-------RRKGKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIR 360
Query: 275 ALQRRKRHVPYRNSKLTQVLKDS-LGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSV 333
AL R K H P+R SKLTQVL+DS +GE+S+T M+ +SP T+ +L +A RVK +
Sbjct: 361 ALGRNKPHTPFRASKLTQVLRDSFIGENSRTCMIATISPGMASCENTLNTLRYANRVKEL 420
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 113 bits (282), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 91/305 (29%), Positives = 141/305 (46%), Gaps = 28/305 (9%)
Query: 41 LLKLADNKSKNYSFDKVFHPGSSQDEVFS-EVEPVIKSVLDGYNACIFAYGQTGTGKSFT 99
L K +N++ + FD F +S + V+ P+++++ +G A FAYGQTG+GK+ T
Sbjct: 114 LTKYLENQA--FCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHT 171
Query: 100 MEG------TPDSPGIVPRAIEAIF---KQAMESNHAFRISFSMLEIYLGSLKDLLVTQP 150
M G S GI A +F Q N + + EIY G + DLL +
Sbjct: 172 MGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKA 231
Query: 151 TKATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXX 210
L + + + +++ L V + +++ +G
Sbjct: 232 K---------LRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSS 282
Query: 211 XXHCMIRISITCFDAPERRREKNKIWLVDLGGSERVLKTKARGRRLD-EGKAINLSLSAL 269
H +I + + R K LVDL G+ER T + R+ EG IN SL AL
Sbjct: 283 RSHACFQILLR-----TKGRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLAL 337
Query: 270 GDVIYALQRRKRHVPYRNSKLTQVLKDS-LGEDSKTLMLVHVSPKEDDLCETICSLNFAT 328
+ I AL + K H P+R SKLTQVL+DS +GE+S+T M+ +SP T+ +L +A
Sbjct: 338 KECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYAD 397
Query: 329 RVKSV 333
RVK +
Sbjct: 398 RVKEL 402
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 112 bits (280), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 91/305 (29%), Positives = 141/305 (46%), Gaps = 28/305 (9%)
Query: 41 LLKLADNKSKNYSFDKVFHPGSSQDEVFS-EVEPVIKSVLDGYNACIFAYGQTGTGKSFT 99
L K +N++ + FD F +S + V+ P+++++ +G A FAYGQTG+GK+ T
Sbjct: 42 LTKYLENQA--FCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHT 99
Query: 100 MEGTPD------SPGIVPRAIEAIF---KQAMESNHAFRISFSMLEIYLGSLKDLLVTQP 150
M G S GI A +F Q N + + EIY G + DLL +
Sbjct: 100 MGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKA 159
Query: 151 TKATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXX 210
L + + + +++ L V + +++ +G
Sbjct: 160 K---------LRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSS 210
Query: 211 XXHCMIRISITCFDAPERRREKNKIWLVDLGGSERVLKTKARGRRLD-EGKAINLSLSAL 269
H +I + + R K LVDL G+ER T + R+ EG IN SL AL
Sbjct: 211 RSHACFQILL-----RTKGRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLAL 265
Query: 270 GDVIYALQRRKRHVPYRNSKLTQVLKDS-LGEDSKTLMLVHVSPKEDDLCETICSLNFAT 328
+ I AL + K H P+R SKLTQVL+DS +GE+S+T M+ +SP T+ +L +A
Sbjct: 266 KECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYAD 325
Query: 329 RVKSV 333
RVK +
Sbjct: 326 RVKEL 330
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 115/245 (46%), Gaps = 21/245 (8%)
Query: 10 NIRVFCRIRPISMGENF--GRLRPVIAKDSSNVLLKLADNKSKNYSFDKVFHPGSSQDEV 67
+I+V CR RP++ E + P + + V+ + K Y FD+V P ++Q++V
Sbjct: 7 SIKVMCRFRPLNEAEILRGDKFIPKFKGEETVVI-----GQGKPYVFDRVLPPNTTQEQV 61
Query: 68 FSE-VEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSP---GIVPRAIEAIFKQ--A 121
++ + ++K VL+GYN IFAYGQT +GK+ TMEG P GI+PR IF +
Sbjct: 62 YNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPQLMGIIPRIAHDIFDHIYS 121
Query: 122 MESNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQV 181
M+ N F I S EIYL ++DLL T L++H + + V
Sbjct: 122 MDENLEFHIKVSYFEIYLDKIRDLLDVSKTN--------LAVHEDKNRVPYVKGCTERFV 173
Query: 182 NDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRISITCFDAPERRREKNKIWLVDLG 241
+ + + + G H + I+I + ++ K++LVDL
Sbjct: 174 SSPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQENVETEKKLSGKLYLVDLA 233
Query: 242 GSERV 246
GSE+V
Sbjct: 234 GSEKV 238
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 87/294 (29%), Positives = 141/294 (47%), Gaps = 28/294 (9%)
Query: 52 YSFDKVFHPGSSQDEVF-SEVEPVIKSVLDGY-NACI---FAYGQTGTGKSFTMEGT--- 103
+ DKVF V+ + ++P+I +D Y N C+ FAYGQTG+GK++TM G+
Sbjct: 52 FIVDKVFDDTVDNFTVYENTIKPLI---IDLYENGCVCSCFAYGQTGSGKTYTMLGSQPY 108
Query: 104 --PDSPGIVPRAIEAIFK--QAMESNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPP 159
D+PGI A IF + ++ I S EIY G L DLL Q K L
Sbjct: 109 GQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLL--QKRKMVAALE- 165
Query: 160 CLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFXXXXXXXXXXXXXXXHCMIRIS 219
K + + +L ++V + + G H ++ I
Sbjct: 166 ------NGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNID 219
Query: 220 ITCFDAPERRREKNKIWLVDLGGSERVLKTKARGRRLD-EGKAINLSLSALGDVIYALQR 278
+ + + KI +DL GSER T ++ ++ +G IN SL AL + I A+
Sbjct: 220 LKDIN---KNTSLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDS 276
Query: 279 RKRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKS 332
K H+P+R+S+LT+VL+D SK++M+ ++SP +T+ +L +++RVK+
Sbjct: 277 DKNHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVKN 330
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Query: 263 NLSLSALGDVIYAL-QRRKRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETI 321
N SLSALG+VI AL + K HVPYR+SK+T++L+DSLG + +T +++ SP + ET
Sbjct: 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETK 60
Query: 322 CSLNFATRVKSV 333
+L F R K++
Sbjct: 61 STLMFGQRAKTI 72
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 259 GKAINLSLSALGDVIYAL-QRRKRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDL 317
K IN SLSALG+VI AL + K HVPYR+SK+T++L+DSL + +T +++ SP +
Sbjct: 1 AKNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNE 60
Query: 318 CETICSLNFATRVKSV 333
ET +L F R K++
Sbjct: 61 AETKSTLMFGQRAKTI 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,049,667
Number of Sequences: 62578
Number of extensions: 902897
Number of successful extensions: 2579
Number of sequences better than 100.0: 72
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2321
Number of HSP's gapped (non-prelim): 98
length of query: 874
length of database: 14,973,337
effective HSP length: 107
effective length of query: 767
effective length of database: 8,277,491
effective search space: 6348835597
effective search space used: 6348835597
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)