Query 002847
Match_columns 874
No_of_seqs 328 out of 1969
Neff 4.7
Searched_HMMs 46136
Date Thu Mar 28 11:59:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002847.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002847hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0243 Kinesin-like protein [ 100.0 1.8E-84 3.9E-89 764.8 32.4 329 8-341 48-398 (1041)
2 KOG4280 Kinesin-like protein [ 100.0 1.3E-83 2.7E-88 731.3 26.4 327 7-340 3-343 (574)
3 KOG0245 Kinesin-like protein [ 100.0 8.4E-82 1.8E-86 730.8 22.4 380 8-396 3-424 (1221)
4 cd01370 KISc_KIP3_like Kinesin 100.0 6.8E-79 1.5E-83 664.3 34.0 316 10-333 1-338 (338)
5 KOG0240 Kinesin (SMY1 subfamil 100.0 2.1E-79 4.6E-84 683.5 30.2 320 7-335 5-333 (607)
6 cd01373 KISc_KLP2_like Kinesin 100.0 2.6E-78 5.6E-83 659.5 35.1 316 9-333 1-337 (337)
7 KOG0242 Kinesin-like protein [ 100.0 1.8E-78 3.8E-83 708.4 32.7 351 8-369 5-365 (675)
8 PLN03188 kinesin-12 family pro 100.0 3.4E-77 7.4E-82 708.9 37.6 345 8-371 97-468 (1320)
9 cd01368 KISc_KIF23_like Kinesi 100.0 7.7E-77 1.7E-81 650.0 36.0 316 10-331 2-345 (345)
10 cd01365 KISc_KIF1A_KIF1B Kines 100.0 1.7E-75 3.8E-80 641.0 36.4 324 9-337 1-353 (356)
11 cd01367 KISc_KIF2_like Kinesin 100.0 1.8E-75 3.9E-80 633.4 33.8 311 9-331 1-322 (322)
12 KOG0239 Kinesin (KAR3 subfamil 100.0 3E-76 6.5E-81 688.1 24.9 332 2-339 307-646 (670)
13 cd01364 KISc_BimC_Eg5 Kinesin 100.0 2.6E-74 5.7E-79 630.1 36.5 325 9-338 2-348 (352)
14 cd01369 KISc_KHC_KIF5 Kinesin 100.0 3.7E-74 8.1E-79 622.4 35.3 317 9-333 2-325 (325)
15 cd01376 KISc_KID_like Kinesin 100.0 4E-74 8.6E-79 621.9 34.8 311 10-331 1-319 (319)
16 cd01371 KISc_KIF3 Kinesin moto 100.0 5.5E-74 1.2E-78 624.0 34.7 318 9-333 1-333 (333)
17 cd01374 KISc_CENP_E Kinesin mo 100.0 7.5E-74 1.6E-78 619.5 34.8 314 10-333 1-321 (321)
18 cd01366 KISc_C_terminal Kinesi 100.0 2.3E-73 4.9E-78 616.7 37.5 323 8-336 1-329 (329)
19 cd01372 KISc_KIF4 Kinesin moto 100.0 2.9E-73 6.4E-78 618.6 34.8 318 10-334 2-341 (341)
20 KOG0241 Kinesin-like protein [ 100.0 5.1E-74 1.1E-78 654.8 26.4 323 8-336 3-354 (1714)
21 cd01375 KISc_KIF9_like Kinesin 100.0 9.2E-72 2E-76 607.2 34.2 316 10-331 1-334 (334)
22 cd00106 KISc Kinesin motor dom 100.0 5.2E-69 1.1E-73 580.5 36.5 315 10-331 1-328 (328)
23 smart00129 KISc Kinesin motor, 100.0 5.6E-69 1.2E-73 582.9 36.3 321 10-338 1-333 (335)
24 PF00225 Kinesin: Kinesin moto 100.0 5.1E-69 1.1E-73 582.1 25.7 314 16-333 1-335 (335)
25 KOG0246 Kinesin-like protein [ 100.0 9E-66 1.9E-70 572.7 28.6 316 9-336 208-544 (676)
26 KOG0247 Kinesin-like protein [ 100.0 7.5E-64 1.6E-68 569.8 28.6 327 6-336 28-439 (809)
27 KOG0244 Kinesin-like protein [ 100.0 2E-63 4.3E-68 579.6 9.4 355 17-383 1-369 (913)
28 COG5059 KIP1 Kinesin-like prot 100.0 3.8E-60 8.3E-65 547.7 29.3 316 9-339 22-342 (568)
29 cd01363 Motor_domain Myosin an 100.0 1.6E-49 3.4E-54 399.6 18.3 176 67-312 8-186 (186)
30 COG5059 KIP1 Kinesin-like prot 98.0 6.5E-08 1.4E-12 113.9 -10.8 247 10-277 306-566 (568)
31 PF00308 Bac_DnaA: Bacterial d 94.4 0.023 5E-07 59.7 2.3 50 50-101 3-52 (219)
32 KOG0239 Kinesin (KAR3 subfamil 93.4 0.014 3.1E-07 70.8 -1.8 89 49-150 25-113 (670)
33 COG0556 UvrB Helicase subunit 92.5 0.28 6.1E-06 58.0 7.1 89 50-142 3-100 (663)
34 PRK06620 hypothetical protein; 91.5 0.11 2.5E-06 54.5 2.3 50 49-101 10-62 (214)
35 PRK14086 dnaA chromosomal repl 90.1 0.16 3.5E-06 61.3 2.1 51 50-102 283-333 (617)
36 TIGR00362 DnaA chromosomal rep 90.0 0.21 4.6E-06 56.8 3.0 51 49-101 104-154 (405)
37 PRK00149 dnaA chromosomal repl 89.9 0.2 4.4E-06 57.9 2.7 51 49-101 116-166 (450)
38 PRK14088 dnaA chromosomal repl 89.8 0.21 4.5E-06 58.0 2.7 50 49-101 99-148 (440)
39 PRK12377 putative replication 89.2 0.31 6.6E-06 52.7 3.2 51 51-102 70-120 (248)
40 COG2805 PilT Tfp pilus assembl 88.4 0.27 5.8E-06 54.9 2.1 31 71-101 113-143 (353)
41 PRK06893 DNA replication initi 88.3 0.41 8.8E-06 50.5 3.4 49 49-102 10-58 (229)
42 PRK08116 hypothetical protein; 88.1 0.3 6.5E-06 53.1 2.4 51 50-101 80-132 (268)
43 PRK08084 DNA replication initi 88.1 0.37 8E-06 51.1 3.0 49 49-102 16-64 (235)
44 PRK07952 DNA replication prote 87.1 0.51 1.1E-05 50.9 3.3 52 50-102 67-118 (244)
45 COG0593 DnaA ATPase involved i 86.9 0.39 8.5E-06 55.5 2.4 51 49-101 81-131 (408)
46 PRK14087 dnaA chromosomal repl 86.9 0.42 9E-06 55.8 2.7 49 51-101 111-159 (450)
47 COG2804 PulE Type II secretory 86.9 0.34 7.4E-06 57.1 1.9 32 71-102 246-277 (500)
48 PRK05642 DNA replication initi 86.3 0.57 1.2E-05 49.7 3.1 51 49-101 13-63 (234)
49 TIGR03420 DnaA_homol_Hda DnaA 86.0 0.63 1.4E-05 47.8 3.2 47 49-100 9-55 (226)
50 PRK09087 hypothetical protein; 85.5 0.53 1.1E-05 49.9 2.4 48 49-101 15-62 (226)
51 PRK08903 DnaA regulatory inact 85.0 0.84 1.8E-05 47.5 3.6 49 49-101 12-60 (227)
52 COG1474 CDC6 Cdc6-related prot 84.3 1.9 4E-05 49.3 6.2 33 68-100 26-59 (366)
53 TIGR02928 orc1/cdc6 family rep 83.7 0.92 2E-05 50.2 3.4 46 55-100 11-57 (365)
54 PRK06835 DNA replication prote 83.1 0.64 1.4E-05 52.3 1.8 36 66-102 167-202 (329)
55 PRK12422 chromosomal replicati 81.7 1.1 2.3E-05 52.5 3.0 51 49-101 105-159 (445)
56 COG1484 DnaC DNA replication p 81.0 1.3 2.9E-05 47.9 3.3 51 50-102 74-124 (254)
57 PF04851 ResIII: Type III rest 80.9 1 2.2E-05 43.8 2.1 31 72-102 13-44 (184)
58 PRK00411 cdc6 cell division co 80.6 1.5 3.4E-05 49.1 3.8 39 62-100 33-72 (394)
59 PRK08939 primosomal protein Dn 79.3 1.1 2.3E-05 49.9 2.0 51 52-102 124-175 (306)
60 cd00009 AAA The AAA+ (ATPases 78.3 1.5 3.3E-05 40.0 2.3 25 76-100 12-36 (151)
61 PRK06526 transposase; Provisio 76.6 1.2 2.6E-05 48.3 1.3 40 58-102 77-117 (254)
62 PRK08727 hypothetical protein; 76.3 1.9 4.1E-05 45.7 2.7 45 50-101 14-59 (233)
63 PF13245 AAA_19: Part of AAA d 76.0 1.4 3.1E-05 39.2 1.4 26 75-101 3-28 (76)
64 PRK08181 transposase; Validate 75.5 2 4.2E-05 47.2 2.6 21 80-102 105-125 (269)
65 cd00046 DEXDc DEAD-like helica 75.4 1.1 2.5E-05 40.3 0.7 17 86-102 3-19 (144)
66 PTZ00112 origin recognition co 75.2 1.3 2.9E-05 55.7 1.3 38 63-100 759-798 (1164)
67 PRK06921 hypothetical protein; 74.7 2.4 5.1E-05 46.2 3.0 51 51-102 80-136 (266)
68 TIGR02538 type_IV_pilB type IV 73.4 1.7 3.6E-05 52.3 1.5 29 74-102 307-335 (564)
69 PRK10436 hypothetical protein; 73.1 1.8 3.9E-05 50.9 1.7 29 73-101 208-236 (462)
70 PRK12402 replication factor C 73.0 2 4.3E-05 46.9 1.9 42 53-101 13-54 (337)
71 smart00382 AAA ATPases associa 72.5 1.5 3.3E-05 39.4 0.7 18 84-101 3-20 (148)
72 TIGR02533 type_II_gspE general 72.4 2.1 4.5E-05 50.7 2.0 29 73-101 232-260 (486)
73 PF00270 DEAD: DEAD/DEAH box h 72.0 2.2 4.7E-05 41.3 1.7 26 74-101 7-32 (169)
74 PF13191 AAA_16: AAA ATPase do 71.5 1.5 3.2E-05 43.2 0.4 34 67-100 8-41 (185)
75 TIGR01420 pilT_fam pilus retra 71.2 2.2 4.9E-05 47.9 1.8 30 72-101 111-140 (343)
76 PF13401 AAA_22: AAA domain; P 71.0 1.5 3.2E-05 40.9 0.3 30 83-122 4-33 (131)
77 PF13604 AAA_30: AAA domain; P 70.0 2.6 5.6E-05 43.6 1.8 29 73-101 8-36 (196)
78 cd01131 PilT Pilus retraction 69.4 1.9 4.2E-05 44.5 0.8 19 83-101 1-19 (198)
79 PF12846 AAA_10: AAA-like doma 69.3 1.9 4.1E-05 45.5 0.7 19 83-101 1-19 (304)
80 PF01637 Arch_ATPase: Archaeal 69.2 2.2 4.8E-05 43.0 1.2 30 71-100 8-37 (234)
81 PF05673 DUF815: Protein of un 68.8 4.1 9E-05 44.5 3.1 130 52-217 24-156 (249)
82 TIGR02524 dot_icm_DotB Dot/Icm 68.8 2.8 6E-05 47.8 1.9 24 78-101 129-152 (358)
83 TIGR02525 plasmid_TraJ plasmid 68.3 2.9 6.3E-05 47.9 2.0 28 73-101 140-167 (372)
84 PF01935 DUF87: Domain of unkn 68.1 2 4.3E-05 44.7 0.5 17 85-101 25-41 (229)
85 PF00437 T2SE: Type II/IV secr 67.7 2.4 5.3E-05 45.3 1.1 29 71-100 116-144 (270)
86 TIGR03015 pepcterm_ATPase puta 67.5 3.8 8.2E-05 43.3 2.5 25 76-100 36-60 (269)
87 KOG0989 Replication factor C, 67.1 4.2 9.1E-05 45.8 2.8 27 74-100 48-74 (346)
88 cd01129 PulE-GspE PulE/GspE Th 66.9 3.3 7.2E-05 45.0 2.0 29 73-101 70-98 (264)
89 PF13086 AAA_11: AAA domain; P 65.7 3.2 7E-05 41.8 1.5 28 74-102 9-36 (236)
90 COG5008 PilU Tfp pilus assembl 64.8 4.7 0.0001 44.9 2.5 30 72-101 116-145 (375)
91 TIGR00635 ruvB Holliday juncti 63.5 5.1 0.00011 43.5 2.6 39 62-100 7-47 (305)
92 PF01695 IstB_IS21: IstB-like 62.9 5.2 0.00011 41.0 2.4 19 84-102 48-66 (178)
93 KOG4005 Transcription factor X 62.4 22 0.00048 38.7 6.9 54 342-395 83-136 (292)
94 PF00004 AAA: ATPase family as 62.2 2.9 6.2E-05 38.7 0.3 15 86-100 1-15 (132)
95 TIGR02782 TrbB_P P-type conjug 62.0 5.1 0.00011 44.5 2.3 28 72-100 122-149 (299)
96 COG1201 Lhr Lhr-like helicases 61.9 7.1 0.00015 49.0 3.7 25 74-100 30-54 (814)
97 PF05970 PIF1: PIF1-like helic 60.8 5.9 0.00013 44.9 2.6 37 61-100 3-39 (364)
98 smart00053 DYNc Dynamin, GTPas 60.4 17 0.00037 39.4 5.8 54 180-246 85-138 (240)
99 PF00580 UvrD-helicase: UvrD/R 59.8 3.9 8.5E-05 43.4 0.9 21 81-101 11-31 (315)
100 PF06309 Torsin: Torsin; Inte 59.1 4.8 0.0001 39.9 1.3 25 86-120 56-80 (127)
101 PF05496 RuvB_N: Holliday junc 59.0 11 0.00023 41.0 3.9 42 58-99 23-66 (233)
102 PF13479 AAA_24: AAA domain 58.3 4.5 9.8E-05 42.2 1.1 20 83-102 3-22 (213)
103 PRK10803 tol-pal system protei 58.1 18 0.00039 39.6 5.6 46 350-395 55-100 (263)
104 smart00487 DEXDc DEAD-like hel 58.0 6.8 0.00015 37.7 2.2 27 75-102 17-43 (201)
105 PF00448 SRP54: SRP54-type pro 58.0 3.9 8.5E-05 42.6 0.5 17 85-101 3-19 (196)
106 COG4962 CpaF Flp pilus assembl 57.4 6 0.00013 45.1 1.9 73 72-148 163-268 (355)
107 PRK13894 conjugal transfer ATP 56.8 6.4 0.00014 44.2 2.0 28 72-100 138-165 (319)
108 TIGR02881 spore_V_K stage V sp 56.2 11 0.00024 40.4 3.6 18 83-100 42-59 (261)
109 cd01130 VirB11-like_ATPase Typ 56.1 7.8 0.00017 39.5 2.3 29 71-100 14-42 (186)
110 PF13207 AAA_17: AAA domain; P 55.7 5.3 0.00011 36.9 0.9 16 85-100 1-16 (121)
111 PRK12723 flagellar biosynthesi 55.2 11 0.00024 43.6 3.6 18 83-100 174-191 (388)
112 TIGR03499 FlhF flagellar biosy 55.0 11 0.00025 41.2 3.5 18 85-102 196-213 (282)
113 PRK04195 replication factor C 54.9 10 0.00022 44.7 3.2 37 64-100 19-56 (482)
114 PF08172 CASP_C: CASP C termin 54.4 26 0.00056 38.4 6.0 48 350-397 87-134 (248)
115 PF00170 bZIP_1: bZIP transcri 54.3 35 0.00076 29.3 5.7 41 344-384 21-61 (64)
116 PRK13833 conjugal transfer pro 54.2 7.5 0.00016 43.9 1.9 27 73-100 135-161 (323)
117 PRK13342 recombination factor 53.7 7.4 0.00016 44.8 1.9 38 63-100 16-53 (413)
118 PF04977 DivIC: Septum formati 52.6 66 0.0014 28.0 7.3 42 351-392 19-60 (80)
119 PRK13900 type IV secretion sys 52.4 7.9 0.00017 43.7 1.8 29 71-100 149-177 (332)
120 PF13671 AAA_33: AAA domain; P 52.4 6 0.00013 37.5 0.7 14 86-99 2-15 (143)
121 PF03215 Rad17: Rad17 cell cyc 52.3 9.4 0.0002 45.8 2.5 31 70-100 30-62 (519)
122 COG4096 HsdR Type I site-speci 52.3 14 0.00031 46.3 4.0 36 66-102 167-204 (875)
123 cd00268 DEADc DEAD-box helicas 52.3 9.5 0.00021 38.5 2.2 24 74-99 29-52 (203)
124 TIGR00631 uvrb excinuclease AB 52.1 21 0.00045 44.1 5.4 87 52-142 2-97 (655)
125 PRK11776 ATP-dependent RNA hel 51.6 9 0.00019 44.4 2.1 25 73-99 33-57 (460)
126 PTZ00424 helicase 45; Provisio 51.5 8.5 0.00018 43.2 1.9 26 73-100 57-82 (401)
127 PHA02544 44 clamp loader, smal 50.6 9.5 0.00021 41.6 2.0 22 80-101 39-61 (316)
128 PLN03025 replication factor C 50.6 9.7 0.00021 42.2 2.1 35 64-101 18-52 (319)
129 PF00063 Myosin_head: Myosin h 50.2 10 0.00022 46.6 2.4 36 65-100 66-102 (689)
130 smart00338 BRLZ basic region l 50.0 49 0.0011 28.4 5.9 41 344-384 21-61 (65)
131 TIGR00348 hsdR type I site-spe 50.0 12 0.00026 46.1 2.9 32 70-102 246-282 (667)
132 PF01580 FtsK_SpoIIIE: FtsK/Sp 49.9 5.8 0.00013 40.6 0.2 17 85-101 40-56 (205)
133 KOG0926 DEAH-box RNA helicase 49.3 11 0.00024 47.2 2.4 35 83-117 271-319 (1172)
134 PRK06547 hypothetical protein; 49.2 14 0.0003 37.8 2.8 29 72-100 4-32 (172)
135 PRK00080 ruvB Holliday junctio 48.8 11 0.00025 41.7 2.3 40 62-101 28-69 (328)
136 PHA02653 RNA helicase NPH-II; 48.7 20 0.00043 44.4 4.5 33 62-99 163-195 (675)
137 PF02562 PhoH: PhoH-like prote 48.5 11 0.00024 40.0 2.0 18 82-99 18-35 (205)
138 KOG1514 Origin recognition com 48.3 30 0.00066 42.9 5.8 49 65-123 402-452 (767)
139 PRK11192 ATP-dependent RNA hel 48.2 11 0.00023 43.3 2.1 25 73-99 30-54 (434)
140 PRK13851 type IV secretion sys 48.1 7.4 0.00016 44.3 0.7 30 71-101 151-180 (344)
141 PRK11448 hsdR type I restricti 48.0 12 0.00026 48.8 2.6 31 71-102 422-452 (1123)
142 PRK09183 transposase/IS protei 47.8 11 0.00023 41.0 1.8 21 80-102 101-121 (259)
143 PF13238 AAA_18: AAA domain; P 47.4 8 0.00017 35.5 0.7 15 86-100 1-15 (129)
144 PF07728 AAA_5: AAA domain (dy 47.2 7.1 0.00015 37.2 0.3 15 86-100 2-16 (139)
145 PF00910 RNA_helicase: RNA hel 47.2 6.3 0.00014 36.7 -0.0 26 86-121 1-26 (107)
146 PHA00729 NTP-binding motif con 46.1 16 0.00034 39.5 2.8 29 73-101 7-35 (226)
147 PRK00888 ftsB cell division pr 46.0 82 0.0018 30.1 7.3 43 350-392 28-70 (105)
148 PTZ00361 26 proteosome regulat 45.9 40 0.00088 39.7 6.3 16 85-100 219-234 (438)
149 PRK13764 ATPase; Provisional 45.8 11 0.00023 46.2 1.5 20 82-101 256-275 (602)
150 PRK04837 ATP-dependent RNA hel 45.6 12 0.00026 42.8 2.0 26 73-100 37-62 (423)
151 PRK00440 rfc replication facto 45.0 13 0.00028 40.2 1.9 21 80-100 35-55 (319)
152 KOG0340 ATP-dependent RNA heli 44.9 14 0.00031 42.5 2.3 29 73-103 36-64 (442)
153 TIGR01242 26Sp45 26S proteasom 44.4 43 0.00093 37.8 6.0 98 3-100 58-173 (364)
154 COG1222 RPT1 ATP-dependent 26S 44.4 16 0.00034 42.3 2.5 43 84-126 186-245 (406)
155 PRK10536 hypothetical protein; 44.1 12 0.00026 41.3 1.5 41 51-100 51-91 (262)
156 COG1223 Predicted ATPase (AAA+ 43.5 9.8 0.00021 42.4 0.7 18 83-100 151-168 (368)
157 PRK10590 ATP-dependent RNA hel 43.3 15 0.00032 42.8 2.2 26 73-100 30-55 (456)
158 PF07724 AAA_2: AAA domain (Cd 43.0 11 0.00023 38.6 0.9 16 84-99 4-19 (171)
159 PRK13341 recombination factor 42.7 15 0.00033 45.7 2.3 39 63-101 32-70 (725)
160 KOG0727 26S proteasome regulat 42.2 16 0.00035 40.5 2.1 73 52-124 152-247 (408)
161 PF06005 DUF904: Protein of un 42.2 68 0.0015 28.9 5.7 41 352-392 21-61 (72)
162 COG2256 MGS1 ATPase related to 40.7 15 0.00032 42.9 1.6 38 62-99 27-64 (436)
163 PF06048 DUF927: Domain of unk 40.5 26 0.00056 38.6 3.4 33 72-105 183-221 (286)
164 smart00242 MYSc Myosin. Large 40.4 23 0.00049 43.8 3.3 36 65-100 73-109 (677)
165 PF06414 Zeta_toxin: Zeta toxi 40.2 12 0.00026 38.5 0.8 19 82-100 14-32 (199)
166 PRK14722 flhF flagellar biosyn 40.2 12 0.00026 43.2 0.8 19 83-101 137-155 (374)
167 cd01383 MYSc_type_VIII Myosin 40.0 25 0.00054 43.6 3.5 36 65-100 73-109 (677)
168 cd01384 MYSc_type_XI Myosin mo 39.8 24 0.00052 43.7 3.3 36 65-100 69-105 (674)
169 cd00124 MYSc Myosin motor doma 39.7 24 0.00051 43.7 3.3 36 65-100 67-103 (679)
170 PRK13729 conjugal transfer pil 39.6 60 0.0013 38.8 6.3 44 351-394 78-121 (475)
171 KOG3119 Basic region leucine z 39.6 50 0.0011 36.5 5.4 44 343-386 209-252 (269)
172 cd01381 MYSc_type_VII Myosin m 39.5 26 0.00056 43.4 3.6 36 65-100 67-103 (671)
173 PRK10865 protein disaggregatio 39.3 23 0.00049 45.0 3.1 44 53-100 566-615 (857)
174 PRK00771 signal recognition pa 39.3 32 0.00069 40.6 4.1 18 83-100 95-112 (437)
175 PRK05703 flhF flagellar biosyn 39.3 24 0.00053 41.2 3.1 18 84-101 222-239 (424)
176 cd01378 MYSc_type_I Myosin mot 39.0 27 0.00058 43.3 3.5 36 65-100 67-103 (674)
177 cd01387 MYSc_type_XV Myosin mo 38.8 26 0.00057 43.4 3.5 36 65-100 68-104 (677)
178 cd01385 MYSc_type_IX Myosin mo 38.7 26 0.00056 43.6 3.4 36 65-100 75-111 (692)
179 cd01120 RecA-like_NTPases RecA 38.4 12 0.00026 35.3 0.4 16 86-101 2-17 (165)
180 TIGR00614 recQ_fam ATP-depende 38.3 21 0.00045 41.8 2.4 26 73-100 18-43 (470)
181 PF05729 NACHT: NACHT domain 38.1 14 0.0003 35.3 0.8 16 85-100 2-17 (166)
182 TIGR02237 recomb_radB DNA repa 38.0 18 0.0004 36.9 1.7 25 76-100 2-29 (209)
183 PF07693 KAP_NTPase: KAP famil 37.9 23 0.00049 38.5 2.5 30 71-100 8-37 (325)
184 PRK14974 cell division protein 37.8 31 0.00068 39.2 3.6 19 83-101 140-158 (336)
185 PRK10416 signal recognition pa 37.8 32 0.0007 38.7 3.7 19 83-101 114-132 (318)
186 TIGR00376 DNA helicase, putati 37.4 20 0.00043 44.0 2.2 18 85-102 175-192 (637)
187 KOG2373 Predicted mitochondria 36.9 29 0.00062 40.2 3.1 28 73-101 261-291 (514)
188 PRK06696 uridine kinase; Valid 36.7 37 0.0008 35.6 3.7 34 66-99 5-38 (223)
189 PRK04328 hypothetical protein; 36.6 25 0.00053 37.8 2.5 26 73-98 10-38 (249)
190 PF10205 KLRAQ: Predicted coil 36.5 92 0.002 30.1 5.9 46 350-395 27-72 (102)
191 TIGR00064 ftsY signal recognit 36.4 34 0.00073 37.6 3.5 19 83-101 72-90 (272)
192 cd01382 MYSc_type_VI Myosin mo 36.4 27 0.0006 43.5 3.1 36 65-100 72-108 (717)
193 PRK11034 clpA ATP-dependent Cl 36.3 30 0.00065 43.5 3.4 37 64-100 463-505 (758)
194 TIGR01241 FtsH_fam ATP-depende 36.3 23 0.00049 41.9 2.3 51 50-100 50-105 (495)
195 PRK11889 flhF flagellar biosyn 36.2 30 0.00065 40.7 3.2 18 84-101 242-259 (436)
196 cd01377 MYSc_type_II Myosin mo 35.9 30 0.00065 43.0 3.3 36 65-100 72-108 (693)
197 TIGR01817 nifA Nif-specific re 35.9 22 0.00048 42.3 2.2 44 51-99 192-235 (534)
198 cd01380 MYSc_type_V Myosin mot 35.9 30 0.00066 42.9 3.4 36 65-100 67-103 (691)
199 COG3074 Uncharacterized protei 35.7 1.2E+02 0.0026 27.6 6.1 37 351-387 20-56 (79)
200 TIGR00602 rad24 checkpoint pro 35.6 25 0.00054 43.3 2.6 38 64-101 89-128 (637)
201 cd01123 Rad51_DMC1_radA Rad51_ 35.5 24 0.00053 36.6 2.2 28 73-100 6-36 (235)
202 TIGR02788 VirB11 P-type DNA tr 35.5 23 0.0005 39.3 2.1 29 71-100 133-161 (308)
203 KOG2543 Origin recognition com 35.4 15 0.00032 42.8 0.6 38 84-139 31-68 (438)
204 PF12775 AAA_7: P-loop contain 35.2 20 0.00044 39.3 1.6 27 73-100 24-50 (272)
205 PRK11634 ATP-dependent RNA hel 35.0 22 0.00048 43.6 2.0 25 74-100 36-60 (629)
206 smart00338 BRLZ basic region l 34.6 1.5E+02 0.0032 25.5 6.5 42 352-393 22-63 (65)
207 TIGR02902 spore_lonB ATP-depen 34.6 26 0.00056 42.1 2.5 43 50-99 60-102 (531)
208 PRK10884 SH3 domain-containing 34.5 1.1E+02 0.0024 32.6 6.9 33 354-386 130-162 (206)
209 smart00763 AAA_PrkA PrkA AAA d 34.4 38 0.00082 39.1 3.6 46 50-99 44-94 (361)
210 KOG4196 bZIP transcription fac 34.4 1.2E+02 0.0026 30.6 6.4 33 359-391 77-109 (135)
211 PRK06067 flagellar accessory p 34.3 28 0.00061 36.5 2.4 28 73-100 12-42 (234)
212 COG1419 FlhF Flagellar GTP-bin 34.0 31 0.00067 40.4 2.8 19 83-101 203-221 (407)
213 PF02534 T4SS-DNA_transf: Type 34.0 31 0.00068 40.0 3.0 17 84-100 45-61 (469)
214 KOG0742 AAA+-type ATPase [Post 33.8 53 0.0012 38.8 4.6 49 84-132 385-449 (630)
215 TIGR01618 phage_P_loop phage n 33.8 16 0.00034 39.2 0.4 20 83-102 12-31 (220)
216 TIGR02639 ClpA ATP-dependent C 33.7 34 0.00073 42.6 3.3 37 64-100 459-501 (731)
217 PF00735 Septin: Septin; Inte 33.5 15 0.00031 40.6 0.1 20 80-99 1-20 (281)
218 PF13476 AAA_23: AAA domain; P 33.5 18 0.00039 35.7 0.8 18 83-100 19-36 (202)
219 PLN00020 ribulose bisphosphate 33.4 34 0.00075 39.9 3.1 73 51-123 111-205 (413)
220 CHL00081 chlI Mg-protoporyphyr 33.0 18 0.0004 41.3 0.8 45 49-100 11-55 (350)
221 COG3074 Uncharacterized protei 32.7 83 0.0018 28.6 4.6 37 354-390 9-45 (79)
222 TIGR03819 heli_sec_ATPase heli 32.7 29 0.00064 39.4 2.4 29 71-100 167-195 (340)
223 PRK00131 aroK shikimate kinase 32.4 21 0.00046 34.7 1.1 16 84-99 5-20 (175)
224 PRK11331 5-methylcytosine-spec 32.4 31 0.00067 41.0 2.5 28 298-329 320-347 (459)
225 PF08537 NBP1: Fungal Nap bind 32.3 92 0.002 35.5 6.0 50 351-400 177-226 (323)
226 PRK04537 ATP-dependent RNA hel 32.3 27 0.00059 42.2 2.1 26 73-100 38-63 (572)
227 TIGR01359 UMP_CMP_kin_fam UMP- 32.3 20 0.00043 35.7 0.9 14 86-99 2-15 (183)
228 COG1219 ClpX ATP-dependent pro 32.2 20 0.00044 41.0 1.0 16 84-99 98-113 (408)
229 KOG1803 DNA helicase [Replicat 32.1 37 0.0008 41.5 3.1 18 84-101 202-219 (649)
230 TIGR02903 spore_lon_C ATP-depe 32.1 28 0.00061 42.5 2.3 42 52-100 151-192 (615)
231 PF07716 bZIP_2: Basic region 32.1 1.5E+02 0.0032 24.8 5.9 32 345-376 21-52 (54)
232 KOG0335 ATP-dependent RNA heli 32.0 19 0.00041 42.8 0.8 26 75-102 105-130 (482)
233 PRK06995 flhF flagellar biosyn 32.0 34 0.00074 40.9 2.8 18 84-101 257-274 (484)
234 PRK01297 ATP-dependent RNA hel 31.8 26 0.00056 41.0 1.8 26 73-100 116-141 (475)
235 COG4026 Uncharacterized protei 31.6 89 0.0019 34.0 5.5 45 352-396 145-189 (290)
236 PRK11664 ATP-dependent RNA hel 31.6 32 0.0007 43.5 2.7 32 67-100 6-37 (812)
237 PLN00206 DEAD-box ATP-dependen 31.5 34 0.00074 40.7 2.8 26 73-100 150-175 (518)
238 KOG2264 Exostosin EXT1L [Signa 31.5 1.5E+02 0.0032 36.3 7.7 15 794-808 491-505 (907)
239 PRK09361 radB DNA repair and r 31.4 38 0.00082 35.2 2.8 28 73-100 10-40 (225)
240 cd02021 GntK Gluconate kinase 31.2 21 0.00046 34.5 0.8 14 86-99 2-15 (150)
241 PF06156 DUF972: Protein of un 31.1 1E+02 0.0022 29.8 5.4 32 351-382 24-55 (107)
242 PF02456 Adeno_IVa2: Adenoviru 31.1 17 0.00038 41.2 0.3 35 85-119 89-139 (369)
243 TIGR03345 VI_ClpV1 type VI sec 31.0 43 0.00094 42.6 3.7 37 64-100 571-613 (852)
244 PF13173 AAA_14: AAA domain 30.9 21 0.00046 34.0 0.8 17 84-100 3-19 (128)
245 PRK14723 flhF flagellar biosyn 30.4 46 0.001 41.9 3.7 18 84-101 186-203 (767)
246 TIGR00618 sbcc exonuclease Sbc 30.4 48 0.001 42.9 4.0 17 84-100 27-43 (1042)
247 cd01126 TraG_VirD4 The TraG/Tr 30.3 26 0.00057 39.7 1.5 16 86-101 2-17 (384)
248 cd01850 CDC_Septin CDC/Septin. 30.2 24 0.00051 38.7 1.1 21 80-100 1-21 (276)
249 TIGR02397 dnaX_nterm DNA polym 30.0 40 0.00088 37.2 2.9 35 63-100 18-53 (355)
250 TIGR03158 cas3_cyano CRISPR-as 29.9 39 0.00084 38.3 2.7 26 75-100 6-31 (357)
251 KOG0735 AAA+-type ATPase [Post 29.8 28 0.0006 43.5 1.6 43 81-123 699-758 (952)
252 cd01428 ADK Adenylate kinase ( 29.7 23 0.00051 35.4 0.9 14 86-99 2-15 (194)
253 cd01386 MYSc_type_XVIII Myosin 29.7 41 0.00088 42.4 3.1 36 65-100 67-103 (767)
254 PRK14961 DNA polymerase III su 29.6 41 0.0009 38.1 2.9 41 53-100 14-55 (363)
255 PRK14963 DNA polymerase III su 29.5 31 0.00066 41.3 1.9 42 53-100 12-53 (504)
256 cd00464 SK Shikimate kinase (S 29.4 23 0.00051 33.9 0.8 15 85-99 1-15 (154)
257 PRK10820 DNA-binding transcrip 29.3 29 0.00062 41.5 1.6 125 50-195 199-326 (520)
258 cd01379 MYSc_type_III Myosin m 29.1 44 0.00096 41.3 3.2 36 65-100 67-103 (653)
259 PRK07261 topology modulation p 29.0 24 0.00053 35.6 0.9 14 86-99 3-16 (171)
260 cd01394 radB RadB. The archaea 29.0 42 0.0009 34.7 2.6 27 74-100 7-36 (218)
261 TIGR02894 DNA_bind_RsfA transc 28.9 1.2E+02 0.0026 31.5 5.6 11 266-276 30-40 (161)
262 PF00170 bZIP_1: bZIP transcri 28.9 2.3E+02 0.005 24.3 6.7 42 351-392 21-62 (64)
263 KOG0953 Mitochondrial RNA heli 28.8 32 0.0007 41.7 1.9 39 85-123 193-237 (700)
264 PF06745 KaiC: KaiC; InterPro 28.6 38 0.00082 35.2 2.2 25 75-99 8-35 (226)
265 PRK12724 flagellar biosynthesi 28.4 52 0.0011 38.9 3.4 17 84-100 224-240 (432)
266 CHL00176 ftsH cell division pr 28.3 36 0.00077 42.0 2.2 17 84-100 217-233 (638)
267 PF05377 FlaC_arch: Flagella a 28.2 1.2E+02 0.0026 26.3 4.7 31 353-383 4-34 (55)
268 TIGR02640 gas_vesic_GvpN gas v 28.2 40 0.00088 36.4 2.4 25 74-100 14-38 (262)
269 PF02202 Tachykinin: Tachykini 28.2 20 0.00044 21.7 0.1 7 867-873 5-11 (11)
270 PF00931 NB-ARC: NB-ARC domain 28.1 54 0.0012 34.8 3.4 29 71-99 5-35 (287)
271 PRK08118 topology modulation p 27.9 26 0.00057 35.4 0.9 13 86-98 4-16 (167)
272 CHL00181 cbbX CbbX; Provisiona 27.8 25 0.00055 38.8 0.8 14 86-99 62-75 (287)
273 COG2433 Uncharacterized conser 27.8 1.1E+02 0.0024 37.7 5.9 23 108-130 164-186 (652)
274 cd01124 KaiC KaiC is a circadi 27.7 28 0.0006 34.5 1.0 15 86-100 2-16 (187)
275 PF15290 Syntaphilin: Golgi-lo 27.5 79 0.0017 35.4 4.4 41 344-384 63-103 (305)
276 TIGR02880 cbbX_cfxQ probable R 27.5 24 0.00052 38.8 0.6 15 85-99 60-74 (284)
277 cd01393 recA_like RecA is a b 27.5 42 0.00092 34.6 2.3 28 73-100 6-36 (226)
278 PHA01747 putative ATP-dependen 27.3 38 0.00083 39.4 2.1 30 71-100 178-207 (425)
279 cd01127 TrwB Bacterial conjuga 27.3 24 0.00052 40.7 0.5 18 83-100 42-59 (410)
280 smart00489 DEXDc3 DEAD-like he 27.3 40 0.00087 37.2 2.3 36 60-100 9-44 (289)
281 smart00488 DEXDc2 DEAD-like he 27.3 40 0.00087 37.2 2.3 36 60-100 9-44 (289)
282 PRK10884 SH3 domain-containing 27.2 1.8E+02 0.0039 31.1 6.9 41 353-393 122-162 (206)
283 TIGR03752 conj_TIGR03752 integ 27.1 1.8E+02 0.004 34.8 7.5 26 352-377 69-94 (472)
284 PRK05580 primosome assembly pr 26.8 39 0.00085 41.8 2.2 26 75-100 153-179 (679)
285 PRK10917 ATP-dependent DNA hel 26.7 49 0.0011 40.9 3.1 20 81-100 280-299 (681)
286 TIGR01313 therm_gnt_kin carboh 26.7 24 0.00051 34.7 0.3 14 86-99 1-14 (163)
287 TIGR01389 recQ ATP-dependent D 26.6 46 0.001 40.1 2.8 26 73-100 20-45 (591)
288 COG0630 VirB11 Type IV secreto 26.6 24 0.00053 39.5 0.4 18 84-101 144-161 (312)
289 PF06005 DUF904: Protein of un 26.5 2.9E+02 0.0063 25.0 7.0 30 353-382 8-37 (72)
290 KOG2264 Exostosin EXT1L [Signa 26.4 92 0.002 38.0 4.9 10 292-301 52-61 (907)
291 TIGR03346 chaperone_ClpB ATP-d 26.4 54 0.0012 41.6 3.4 37 64-100 570-612 (852)
292 KOG4343 bZIP transcription fac 26.1 1.1E+02 0.0024 37.0 5.6 44 343-386 296-339 (655)
293 TIGR02322 phosphon_PhnN phosph 26.1 28 0.0006 34.7 0.7 16 85-100 3-18 (179)
294 PRK11057 ATP-dependent DNA hel 26.0 45 0.00098 40.6 2.6 24 74-99 33-56 (607)
295 TIGR02746 TraC-F-type type-IV 25.9 26 0.00057 43.5 0.5 19 83-101 430-448 (797)
296 PRK08233 hypothetical protein; 25.9 30 0.00065 34.2 0.9 16 85-100 5-20 (182)
297 cd02020 CMPK Cytidine monophos 25.9 31 0.00066 32.7 0.9 14 86-99 2-15 (147)
298 PF08477 Miro: Miro-like prote 25.8 26 0.00056 32.0 0.4 15 86-100 2-16 (119)
299 TIGR02449 conserved hypothetic 25.8 1.3E+02 0.0028 26.9 4.6 38 354-391 5-42 (65)
300 PF07926 TPR_MLP1_2: TPR/MLP1/ 25.6 2.3E+02 0.005 27.9 6.9 32 363-394 98-129 (132)
301 PHA02624 large T antigen; Prov 25.5 53 0.0011 40.5 2.9 27 74-100 420-448 (647)
302 PF13555 AAA_29: P-loop contai 25.5 29 0.00064 30.3 0.6 15 86-100 26-40 (62)
303 PF08298 AAA_PrkA: PrkA AAA do 25.4 1.2E+02 0.0027 35.0 5.6 47 74-120 76-143 (358)
304 PRK01172 ski2-like helicase; P 25.3 46 0.001 40.8 2.4 23 75-99 31-53 (674)
305 PF00158 Sigma54_activat: Sigm 25.2 60 0.0013 33.1 2.9 104 80-198 19-124 (168)
306 PRK15429 formate hydrogenlyase 25.1 42 0.00092 41.3 2.1 43 52-99 373-415 (686)
307 PF10236 DAP3: Mitochondrial r 24.9 59 0.0013 36.3 3.0 23 79-101 19-41 (309)
308 TIGR00231 small_GTP small GTP- 24.9 28 0.00062 31.9 0.5 16 85-100 3-18 (161)
309 PRK14531 adenylate kinase; Pro 24.8 33 0.0007 34.8 0.9 15 85-99 4-18 (183)
310 PRK06217 hypothetical protein; 24.8 32 0.00069 34.8 0.8 14 86-99 4-17 (183)
311 KOG0354 DEAD-box like helicase 24.7 52 0.0011 41.2 2.7 42 55-99 44-92 (746)
312 PRK14951 DNA polymerase III su 24.7 46 0.00099 41.0 2.3 41 53-100 14-55 (618)
313 PF04111 APG6: Autophagy prote 24.7 83 0.0018 35.5 4.1 26 355-380 63-88 (314)
314 PTZ00014 myosin-A; Provisional 24.7 62 0.0013 41.2 3.4 34 67-100 166-200 (821)
315 PF02183 HALZ: Homeobox associ 24.7 2E+02 0.0044 23.8 5.2 33 351-383 7-39 (45)
316 KOG3859 Septins (P-loop GTPase 24.6 39 0.00085 38.0 1.5 27 74-100 32-59 (406)
317 COG1125 OpuBA ABC-type proline 24.6 30 0.00065 38.6 0.6 13 88-100 32-44 (309)
318 PF10168 Nup88: Nuclear pore c 24.4 1.6E+02 0.0035 37.0 6.9 17 174-190 387-403 (717)
319 COG5019 CDC3 Septin family pro 24.4 39 0.00085 39.1 1.5 21 80-100 20-40 (373)
320 TIGR03881 KaiC_arch_4 KaiC dom 24.3 54 0.0012 34.1 2.4 27 74-100 8-37 (229)
321 PRK05342 clpX ATP-dependent pr 24.3 61 0.0013 37.9 3.1 17 83-99 108-124 (412)
322 PRK13169 DNA replication intia 24.2 1.6E+02 0.0035 28.7 5.4 33 350-382 23-55 (110)
323 cd01983 Fer4_NifH The Fer4_Nif 24.2 32 0.0007 29.4 0.6 15 86-100 2-16 (99)
324 PHA02244 ATPase-like protein 24.1 66 0.0014 37.5 3.2 19 80-100 118-136 (383)
325 KOG0804 Cytoplasmic Zn-finger 24.0 1.5E+02 0.0032 35.3 6.0 45 349-393 382-426 (493)
326 TIGR02236 recomb_radA DNA repa 23.9 59 0.0013 35.8 2.7 28 73-100 82-112 (310)
327 TIGR03744 traC_PFL_4706 conjug 23.8 30 0.00065 44.1 0.5 20 82-101 474-493 (893)
328 CHL00195 ycf46 Ycf46; Provisio 23.8 31 0.00067 41.2 0.6 17 84-100 260-276 (489)
329 PF00485 PRK: Phosphoribulokin 23.7 31 0.00066 35.3 0.5 14 86-99 2-15 (194)
330 COG3829 RocR Transcriptional r 23.7 52 0.0011 39.9 2.4 42 50-96 240-281 (560)
331 TIGR03117 cas_csf4 CRISPR-asso 23.6 54 0.0012 40.5 2.6 32 64-100 2-33 (636)
332 TIGR03877 thermo_KaiC_1 KaiC d 23.6 61 0.0013 34.4 2.7 25 74-98 9-36 (237)
333 PF04859 DUF641: Plant protein 23.6 1.2E+02 0.0026 30.5 4.4 41 351-391 89-129 (131)
334 TIGR01360 aden_kin_iso1 adenyl 23.5 36 0.00078 33.8 0.9 16 85-100 5-20 (188)
335 PRK13767 ATP-dependent helicas 23.5 45 0.00099 42.5 2.0 25 74-100 40-64 (876)
336 PF04102 SlyX: SlyX; InterPro 23.5 2E+02 0.0043 25.5 5.4 32 353-384 8-39 (69)
337 TIGR03689 pup_AAA proteasome A 23.3 32 0.00069 41.4 0.6 14 86-99 219-232 (512)
338 PF12718 Tropomyosin_1: Tropom 23.2 2.2E+02 0.0047 28.7 6.3 28 350-377 36-63 (143)
339 PF14645 Chibby: Chibby family 23.2 1.5E+02 0.0033 29.0 5.1 42 351-392 73-114 (116)
340 PRK15422 septal ring assembly 23.2 1.4E+02 0.0031 27.6 4.4 56 351-406 6-72 (79)
341 TIGR00643 recG ATP-dependent D 23.1 62 0.0013 39.6 2.9 27 74-100 243-273 (630)
342 PRK14532 adenylate kinase; Pro 23.1 37 0.0008 34.2 0.9 15 85-99 2-16 (188)
343 TIGR01074 rep ATP-dependent DN 23.0 38 0.00082 41.3 1.2 20 82-101 13-32 (664)
344 PF10412 TrwB_AAD_bind: Type I 22.9 30 0.00065 39.7 0.3 17 84-100 16-32 (386)
345 KOG0739 AAA+-type ATPase [Post 22.9 37 0.0008 38.7 0.9 72 53-124 131-224 (439)
346 PRK14962 DNA polymerase III su 22.9 59 0.0013 38.7 2.6 41 53-100 12-53 (472)
347 COG3883 Uncharacterized protei 22.9 2.3E+02 0.0051 31.6 7.0 41 351-391 40-80 (265)
348 PRK00736 hypothetical protein; 22.9 2.7E+02 0.0059 24.7 6.1 44 351-394 7-50 (68)
349 TIGR02894 DNA_bind_RsfA transc 22.8 3.1E+02 0.0068 28.5 7.4 21 362-382 110-130 (161)
350 PRK10867 signal recognition pa 22.8 85 0.0018 37.1 3.9 19 83-101 100-118 (433)
351 KOG0729 26S proteasome regulat 22.8 42 0.00092 37.6 1.3 43 80-122 206-267 (435)
352 COG0467 RAD55 RecA-superfamily 22.7 56 0.0012 35.0 2.3 25 75-99 12-39 (260)
353 PF07334 IFP_35_N: Interferon- 22.6 1.2E+02 0.0025 28.0 3.8 27 358-384 2-28 (76)
354 PTZ00110 helicase; Provisional 22.6 48 0.001 39.8 1.9 26 73-100 159-184 (545)
355 PRK13889 conjugal transfer rel 22.6 50 0.0011 42.8 2.1 27 73-100 353-379 (988)
356 PF04548 AIG1: AIG1 family; I 22.4 34 0.00075 35.7 0.6 15 85-99 2-16 (212)
357 TIGR02768 TraA_Ti Ti-type conj 22.4 51 0.0011 41.3 2.1 28 73-101 359-386 (744)
358 cd02023 UMPK Uridine monophosp 22.3 34 0.00074 34.8 0.5 15 86-100 2-16 (198)
359 TIGR02173 cyt_kin_arch cytidyl 22.2 39 0.00085 33.0 0.9 16 85-100 2-17 (171)
360 PF14532 Sigma54_activ_2: Sigm 22.1 40 0.00086 32.5 0.9 20 80-99 18-37 (138)
361 COG3883 Uncharacterized protei 22.0 2.2E+02 0.0048 31.8 6.6 26 357-382 67-92 (265)
362 KOG0652 26S proteasome regulat 21.9 41 0.0009 37.6 1.0 14 85-98 207-220 (424)
363 cd01853 Toc34_like Toc34-like 21.8 59 0.0013 35.3 2.2 39 60-100 10-48 (249)
364 PRK11608 pspF phage shock prot 21.8 58 0.0013 36.5 2.2 30 166-195 99-128 (326)
365 PRK14721 flhF flagellar biosyn 21.7 38 0.00083 39.7 0.8 19 83-101 191-209 (420)
366 PRK04406 hypothetical protein; 21.7 2.5E+02 0.0055 25.5 5.8 34 353-386 15-48 (75)
367 PRK04040 adenylate kinase; Pro 21.6 41 0.00088 34.8 0.9 16 85-100 4-19 (188)
368 TIGR02329 propionate_PrpR prop 21.6 52 0.0011 39.7 1.9 44 51-99 208-251 (526)
369 COG2607 Predicted ATPase (AAA+ 21.6 1.1E+02 0.0025 34.0 4.2 50 76-145 77-127 (287)
370 COG1126 GlnQ ABC-type polar am 21.6 39 0.00085 36.8 0.8 23 78-100 17-45 (240)
371 PRK14956 DNA polymerase III su 21.5 59 0.0013 39.0 2.3 35 63-100 22-57 (484)
372 PRK14970 DNA polymerase III su 21.5 65 0.0014 36.3 2.5 25 76-100 31-56 (367)
373 PRK12726 flagellar biosynthesi 21.4 39 0.00084 39.6 0.7 18 84-101 207-224 (407)
374 COG0419 SbcC ATPase involved i 21.4 69 0.0015 40.9 3.0 35 82-118 24-65 (908)
375 PRK15424 propionate catabolism 21.3 56 0.0012 39.5 2.1 42 52-98 216-257 (538)
376 TIGR03817 DECH_helic helicase/ 21.3 61 0.0013 40.6 2.4 26 73-100 43-68 (742)
377 KOG0726 26S proteasome regulat 21.3 84 0.0018 35.8 3.2 40 85-124 221-277 (440)
378 TIGR01447 recD exodeoxyribonuc 21.2 52 0.0011 40.1 1.8 26 74-101 153-178 (586)
379 TIGR00929 VirB4_CagE type IV s 21.2 38 0.00082 41.9 0.7 18 83-100 434-451 (785)
380 PRK06762 hypothetical protein; 21.1 45 0.00097 32.8 1.0 15 85-99 4-18 (166)
381 TIGR03263 guanyl_kin guanylate 21.0 41 0.00089 33.4 0.8 15 85-99 3-17 (180)
382 TIGR03878 thermo_KaiC_2 KaiC d 21.0 65 0.0014 34.9 2.3 17 83-99 36-52 (259)
383 PRK04406 hypothetical protein; 21.0 3.9E+02 0.0085 24.3 6.8 42 353-394 8-49 (75)
384 TIGR01425 SRP54_euk signal rec 20.9 93 0.002 36.8 3.7 19 83-101 100-118 (429)
385 cd01858 NGP_1 NGP-1. Autoanti 20.8 68 0.0015 31.5 2.2 20 81-100 100-119 (157)
386 PRK03839 putative kinase; Prov 20.8 43 0.00092 33.6 0.8 14 86-99 3-16 (180)
387 PRK00295 hypothetical protein; 20.7 3.2E+02 0.007 24.3 6.1 44 351-394 7-50 (68)
388 PF13118 DUF3972: Protein of u 20.7 2.6E+02 0.0056 28.1 6.1 45 351-395 80-124 (126)
389 PRK00300 gmk guanylate kinase; 20.5 42 0.00091 34.2 0.7 17 83-99 5-21 (205)
390 PRK04325 hypothetical protein; 20.5 3.6E+02 0.0077 24.4 6.5 43 351-393 11-53 (74)
391 TIGR01243 CDC48 AAA family ATP 20.4 74 0.0016 39.6 2.9 17 84-100 213-229 (733)
392 KOG0987 DNA helicase PIF1/RRM3 20.3 77 0.0017 38.3 3.0 35 62-100 120-154 (540)
393 PRK14953 DNA polymerase III su 20.3 70 0.0015 38.2 2.5 35 63-100 20-55 (486)
394 cd00820 PEPCK_HprK Phosphoenol 20.3 45 0.00098 32.1 0.8 17 84-100 16-32 (107)
395 KOG1532 GTPase XAB1, interacts 20.2 70 0.0015 36.2 2.3 27 83-119 19-45 (366)
396 PRK06851 hypothetical protein; 20.2 54 0.0012 37.9 1.5 28 73-100 20-47 (367)
397 PRK14127 cell division protein 20.2 2.2E+02 0.0048 27.8 5.4 35 351-385 32-66 (109)
398 PF06156 DUF972: Protein of un 20.1 2.5E+02 0.0055 27.1 5.8 45 351-395 10-54 (107)
399 PRK14530 adenylate kinase; Pro 20.1 45 0.00098 34.6 0.8 15 85-99 5-19 (215)
400 PF04102 SlyX: SlyX; InterPro 20.0 2.5E+02 0.0054 24.8 5.3 35 358-392 6-40 (69)
No 1
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.8e-84 Score=764.84 Aligned_cols=329 Identities=40% Similarity=0.624 Sum_probs=296.8
Q ss_pred CCCEEEEEEeCCCCCCcCCCCCCcEEEeCCC-c-eEEEec-CCC--CceeEeceeeCCCCChHHHHHh-hHHHHHHhhcC
Q 002847 8 AGNIRVFCRIRPISMGENFGRLRPVIAKDSS-N-VLLKLA-DNK--SKNYSFDKVFHPGSSQDEVFSE-VEPVIKSVLDG 81 (874)
Q Consensus 8 kgnIrV~VRIRPl~~~E~~~~~~~vI~~d~~-~-v~l~~~-~~~--~k~F~FD~VF~~~asQeeVF~~-V~PlV~svLdG 81 (874)
.-||+|+|||||++..|.......||.+++. . +.+... .++ .+.|+||+||+|.+.|++||+. |.|+|+.|+.|
T Consensus 48 ~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl~G 127 (1041)
T KOG0243|consen 48 EVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIASKQIDKTFTFDKVFGPESQQEDLYDQAVSPIIKEVLEG 127 (1041)
T ss_pred CCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecccccccccceeecceeeCcchhHHHHHHHHHHHHHHHHhcc
Confidence 3699999999999999988777778888873 3 333322 123 6899999999999999999998 79999999999
Q ss_pred CCeeEEEeccCCCCcceeccC--------CCCCCCcHHHHHHHHHHHHHhcCCeeEEEEEEEEEecceeecccCCCCCCC
Q 002847 82 YNACIFAYGQTGTGKSFTMEG--------TPDSPGIVPRAIEAIFKQAMESNHAFRISFSMLEIYLGSLKDLLVTQPTKA 153 (874)
Q Consensus 82 yN~TIfAYGQTGSGKTyTM~G--------s~e~~GIIPRaledLF~~i~e~~~~f~VsVS~lEIYNEkV~DLL~~~~~~~ 153 (874)
||||||||||||+||||||+| .+.++|||||++.+||+.+...+..|.|+|||+|+|||.++|||++.....
T Consensus 128 yNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~~~EYsvKVSfLELYNEEl~DLLa~~~~~~ 207 (1041)
T KOG0243|consen 128 YNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQGAEYSVKVSFLELYNEELTDLLASEDTSD 207 (1041)
T ss_pred CCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhcCCeEEEEEEehhhhhHHHHHhcCCccccc
Confidence 999999999999999999999 567899999999999999999999999999999999999999999876531
Q ss_pred CCCCCCcceeee-----cCCCcEEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEecC---
Q 002847 154 TDPLPPCLSIHT-----EPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDA--- 225 (874)
Q Consensus 154 ~~~~~~~L~I~e-----d~~ggv~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~d~--- 225 (874)
..+.+.+ +.++||.|+||.++.|.++.|++.+|.+|...|++++|.||.+|||||+||+|+|.....
T Consensus 208 -----~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~~ 282 (1041)
T KOG0243|consen 208 -----KKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTPE 282 (1041)
T ss_pred -----cccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCCc
Confidence 1122222 678999999999999999999999999999999999999999999999999999964332
Q ss_pred CccccccceeEEEeccCccccccccccchhhHHHHHhhhhHHHHHHHHHHHhcCCCCccCCCCccccccccccCCCceee
Q 002847 226 PERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVLKDSLGEDSKTL 305 (874)
Q Consensus 226 ~e~~~~~SkL~LVDLAGSER~~kt~a~G~rlkEg~~INkSLsALg~VI~ALs~k~~hIPYRDSKLTrLLqDSLGGNSKT~ 305 (874)
++.....|||+||||||||...++|+.+.|.+|++.||+||++||+||+||.++..|||||+|||||||||||||.+||+
T Consensus 283 geelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~s~HIPYRESKLTRLLQDSLGGkTKT~ 362 (1041)
T KOG0243|consen 283 GEELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEHSGHIPYRESKLTRLLQDSLGGKTKTC 362 (1041)
T ss_pred chhhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhCCCceeE
Confidence 33456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHhhccccCcCCch
Q 002847 306 MLVHVSPKEDDLCETICSLNFATRVKSVHLGHEDSN 341 (874)
Q Consensus 306 mIa~ISPs~~~~eETLsTLrFAsRAK~Ik~~~~~~~ 341 (874)
|||||||+..+++||++||.||.|||+|+.+|+.+.
T Consensus 363 iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQ 398 (1041)
T KOG0243|consen 363 IIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQ 398 (1041)
T ss_pred EEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccch
Confidence 999999999999999999999999999999887764
No 2
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.3e-83 Score=731.32 Aligned_cols=327 Identities=42% Similarity=0.663 Sum_probs=293.8
Q ss_pred CCCCEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEEEec------CCCCceeEeceeeCCCCChHHHHHh-hHHHHHHhh
Q 002847 7 IAGNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLA------DNKSKNYSFDKVFHPGSSQDEVFSE-VEPVIKSVL 79 (874)
Q Consensus 7 ~kgnIrV~VRIRPl~~~E~~~~~~~vI~~d~~~v~l~~~------~~~~k~F~FD~VF~~~asQeeVF~~-V~PlV~svL 79 (874)
...+|+|++|+||+...+........+.++.....+... ....+.|+||+||+++++|++||+. +.|+|++||
T Consensus 3 ~~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl 82 (574)
T KOG4280|consen 3 PACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVESVL 82 (574)
T ss_pred cccceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHHHh
Confidence 356899999999999987655555555555554443322 2345789999999999999999998 599999999
Q ss_pred cCCCeeEEEeccCCCCcceeccCC-CCCCCcHHHHHHHHHHHHHhc--CCeeEEEEEEEEEecceeecccCCCCCCCCCC
Q 002847 80 DGYNACIFAYGQTGTGKSFTMEGT-PDSPGIVPRAIEAIFKQAMES--NHAFRISFSMLEIYLGSLKDLLVTQPTKATDP 156 (874)
Q Consensus 80 dGyN~TIfAYGQTGSGKTyTM~Gs-~e~~GIIPRaledLF~~i~e~--~~~f~VsVS~lEIYNEkV~DLL~~~~~~~~~~ 156 (874)
+|||+||||||||||||||||.|. ++..|||||++++||..+.+. ...|.|+|||+|||||.|+|||++...
T Consensus 83 ~GyNgtvFaYGQTGsGKTyTM~G~~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~~----- 157 (574)
T KOG4280|consen 83 EGYNGTVFAYGQTGSGKTYTMIGPDPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVNP----- 157 (574)
T ss_pred cccCceEEEeccCCCCCceEeeCCChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccCc-----
Confidence 999999999999999999999999 677899999999999999754 447999999999999999999987653
Q ss_pred CCCcceeeecCCCcEEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEec---CCccccccc
Q 002847 157 LPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFD---APERRREKN 233 (874)
Q Consensus 157 ~~~~L~I~ed~~ggv~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~d---~~e~~~~~S 233 (874)
+.+.++++++.||+|+||+++.|.++++++.+|..|.++|.+++|.||..|||||+||+|+|++.. ........|
T Consensus 158 --~~l~lre~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~~~~~~~~ 235 (574)
T KOG4280|consen 158 --KGLELREDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSDGGLMSGRSS 235 (574)
T ss_pred --CCceeeEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccCCCccccccc
Confidence 458999999999999999999999999999999999999999999999999999999999999832 134456789
Q ss_pred eeEEEeccCccccccccccchhhHHHHHhhhhHHHHHHHHHHHhcCCC-CccCCCCccccccccccCCCceeeEEEecCC
Q 002847 234 KIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKR-HVPYRNSKLTQVLKDSLGEDSKTLMLVHVSP 312 (874)
Q Consensus 234 kL~LVDLAGSER~~kt~a~G~rlkEg~~INkSLsALg~VI~ALs~k~~-hIPYRDSKLTrLLqDSLGGNSKT~mIa~ISP 312 (874)
+|+|||||||||..++++.|.|++|+.+||+||++||+||.||+++++ ||||||||||+||||||||||||+|||||+|
T Consensus 236 rlnlvDLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp 315 (574)
T KOG4280|consen 236 KLNLVDLAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSP 315 (574)
T ss_pred eeeeeeccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceEEEEEecCc
Confidence 999999999999999999999999999999999999999999999776 9999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhccccCcCCc
Q 002847 313 KEDDLCETICSLNFATRVKSVHLGHEDS 340 (874)
Q Consensus 313 s~~~~eETLsTLrFAsRAK~Ik~~~~~~ 340 (874)
+..+++||++||+||+|||.|++.+...
T Consensus 316 ~~~~~~ETlsTLrfA~Rak~I~nk~~in 343 (574)
T KOG4280|consen 316 SSDNYEETLSTLRFAQRAKAIKNKPVIN 343 (574)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhcccccc
Confidence 9999999999999999999999765443
No 3
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=8.4e-82 Score=730.75 Aligned_cols=380 Identities=32% Similarity=0.524 Sum_probs=322.1
Q ss_pred CCCEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEEEecCC--CCceeEeceeeCCC-------CChHHHHHhh-HHHHHH
Q 002847 8 AGNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADN--KSKNYSFDKVFHPG-------SSQDEVFSEV-EPVIKS 77 (874)
Q Consensus 8 kgnIrV~VRIRPl~~~E~~~~~~~vI~~d~~~v~l~~~~~--~~k~F~FD~VF~~~-------asQeeVF~~V-~PlV~s 77 (874)
-.+|+|+|||||++..|....+.+|+...++...+....+ ....|+||+.||.. ++|..||+.+ .|++++
T Consensus 3 ~ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~~ 82 (1221)
T KOG0245|consen 3 GSSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGSKDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLDH 82 (1221)
T ss_pred CCceEEEEEeccchhhhhhcccceEEEecCCceeeecCCCcccCCceecceeeecCCCCCCchhhHHHHHHHHhHHHHHH
Confidence 3589999999999999998888899999988877665442 23559999999864 7899999996 799999
Q ss_pred hhcCCCeeEEEeccCCCCcceeccCCC--CCCCcHHHHHHHHHHHHHh---cCCeeEEEEEEEEEecceeecccCCCCCC
Q 002847 78 VLDGYNACIFAYGQTGTGKSFTMEGTP--DSPGIVPRAIEAIFKQAME---SNHAFRISFSMLEIYLGSLKDLLVTQPTK 152 (874)
Q Consensus 78 vLdGyN~TIfAYGQTGSGKTyTM~Gs~--e~~GIIPRaledLF~~i~e---~~~~f~VsVS~lEIYNEkV~DLL~~~~~~ 152 (874)
+++|||+||||||||||||||||+|.. +++|||||++++||.++.+ ++..|.|.|||+|||||+|+|||+..+
T Consensus 83 AfEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p~-- 160 (1221)
T KOG0245|consen 83 AFEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAPK-- 160 (1221)
T ss_pred HhcccceEEEEeccCCCCcceeeeccCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCCC--
Confidence 999999999999999999999999987 8999999999999999854 456899999999999999999998422
Q ss_pred CCCCCCCcceeeecCCCcEEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEecCC----cc
Q 002847 153 ATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAP----ER 228 (874)
Q Consensus 153 ~~~~~~~~L~I~ed~~ggv~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~d~~----e~ 228 (874)
..+.|+++++|.-|+||++|+.+.|+|+.|+..++..|++.|++++|+||+.|||||+||+|.+++.... -.
T Consensus 161 ----~kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l~ 236 (1221)
T KOG0245|consen 161 ----SKGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGLD 236 (1221)
T ss_pred ----CCCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCCCc
Confidence 2356999999999999999999999999999999999999999999999999999999999999875432 23
Q ss_pred ccccceeEEEeccCccccccccccchhhHHHHHhhhhHHHHHHHHHHHhcC-------CCCccCCCCccccccccccCCC
Q 002847 229 RREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRR-------KRHVPYRNSKLTQVLKDSLGED 301 (874)
Q Consensus 229 ~~~~SkL~LVDLAGSER~~kt~a~G~rlkEg~~INkSLsALg~VI~ALs~k-------~~hIPYRDSKLTrLLqDSLGGN 301 (874)
...+|||+|||||||||+..+++.|+|++||.+|||||.+||+||+||++. +.+||||||.||+||+++||||
T Consensus 237 sek~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGN 316 (1221)
T KOG0245|consen 237 SEKVSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGN 316 (1221)
T ss_pred ceeeeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCc
Confidence 567899999999999999999999999999999999999999999999752 3489999999999999999999
Q ss_pred ceeeEEEecCCCCCCHHHHHHHHHHHHHhhccccCcCCchhhhhHHHHHHHHHHHHHHHHHHHHHH--------------
Q 002847 302 SKTLMLVHVSPKEDDLCETICSLNFATRVKSVHLGHEDSNEARDQKEVSMKNLQQKMKKIEEERLR-------------- 367 (874)
Q Consensus 302 SKT~mIa~ISPs~~~~eETLsTLrFAsRAK~Ik~~~~~~~~~~~~k~~~~~~Lqqkik~LeeE~~~-------------- 367 (874)
|||+|||+|||++.+|+|||+||+||.|||.|++.+..+. +.....+.+|++++.+|+.-+..
T Consensus 317 SKTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNE---dpnaKLIRELreEv~rLksll~~~~~~~~~~~~~p~~ 393 (1221)
T KOG0245|consen 317 SKTAMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNE---DPNAKLIRELREEVARLKSLLRAQGLGDIAVEGSPSA 393 (1221)
T ss_pred chhhhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCC---CccHHHHHHHHHHHHHHHHHHhccccccccccCCccc
Confidence 9999999999999999999999999999999986543322 12223345566665555543321
Q ss_pred --HHHHHHHHHHHHHHHcCChhhHHHHHhhc
Q 002847 368 --VRGEIENLSEKLEALTRPAHSFQEQLEVS 396 (874)
Q Consensus 368 --lr~EIe~Lk~~Le~l~~~~~~lqeql~~~ 396 (874)
.+.+++++.++|.+-++....+++-++.+
T Consensus 394 ~~~~~~~e~~~~~L~E~Ek~mael~etW~EK 424 (1221)
T KOG0245|consen 394 LLSQPEIEELRERLQETEKIMAELNETWEEK 424 (1221)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13346666666666666555555555443
No 4
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=6.8e-79 Score=664.29 Aligned_cols=316 Identities=40% Similarity=0.636 Sum_probs=289.8
Q ss_pred CEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEEEecC-------------CCCceeEeceeeCCCCChHHHHHh-hHHHH
Q 002847 10 NIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLAD-------------NKSKNYSFDKVFHPGSSQDEVFSE-VEPVI 75 (874)
Q Consensus 10 nIrV~VRIRPl~~~E~~~~~~~vI~~d~~~v~l~~~~-------------~~~k~F~FD~VF~~~asQeeVF~~-V~PlV 75 (874)
||+|||||||+...|...+...++.+.+...++.... ...+.|.||+||+++++|++||+. ++|+|
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~plv 80 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKPLV 80 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHHHH
Confidence 7999999999999886656666777666554443221 235789999999999999999998 58999
Q ss_pred HHhhcCCCeeEEEeccCCCCcceeccCCCCCCCcHHHHHHHHHHHHHhc--CCeeEEEEEEEEEecceeecccCCCCCCC
Q 002847 76 KSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAMES--NHAFRISFSMLEIYLGSLKDLLVTQPTKA 153 (874)
Q Consensus 76 ~svLdGyN~TIfAYGQTGSGKTyTM~Gs~e~~GIIPRaledLF~~i~e~--~~~f~VsVS~lEIYNEkV~DLL~~~~~~~ 153 (874)
+++++|||+||||||||||||||||+|+++++|||||++++||+.+... ...|.|++||+|||||+|+|||++..
T Consensus 81 ~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~--- 157 (338)
T cd01370 81 DGVLNGYNATVFAYGATGAGKTHTMLGTDSDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPSS--- 157 (338)
T ss_pred HHHHCCCCceEEeeCCCCCCCeEEEcCCCCCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCCCCC---
Confidence 9999999999999999999999999999999999999999999998654 47899999999999999999997642
Q ss_pred CCCCCCcceeeecCCCcEEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEecCC---cccc
Q 002847 154 TDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAP---ERRR 230 (874)
Q Consensus 154 ~~~~~~~L~I~ed~~ggv~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~d~~---e~~~ 230 (874)
..+.+++++.++++|.|++++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|.+.+.. ....
T Consensus 158 -----~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~ 232 (338)
T cd01370 158 -----GPLELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASINQQV 232 (338)
T ss_pred -----CCceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCCCCCCcE
Confidence 34889999999999999999999999999999999999999999999999999999999999987664 4556
Q ss_pred ccceeEEEeccCccccccccccchhhHHHHHhhhhHHHHHHHHHHHhcCC---CCccCCCCccccccccccCCCceeeEE
Q 002847 231 EKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRK---RHVPYRNSKLTQVLKDSLGEDSKTLML 307 (874)
Q Consensus 231 ~~SkL~LVDLAGSER~~kt~a~G~rlkEg~~INkSLsALg~VI~ALs~k~---~hIPYRDSKLTrLLqDSLGGNSKT~mI 307 (874)
..|+|+|||||||||..+++..|.+++|+.+||+||++|++||.+|+.+. .|||||+||||+||+|+|||||+|+||
T Consensus 233 ~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~I 312 (338)
T cd01370 233 RIGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTVMI 312 (338)
T ss_pred EEEEEEEEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEE
Confidence 78999999999999999999999999999999999999999999999877 899999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHhhcc
Q 002847 308 VHVSPKEDDLCETICSLNFATRVKSV 333 (874)
Q Consensus 308 a~ISPs~~~~eETLsTLrFAsRAK~I 333 (874)
+||||+..+++||++||+||+|||+|
T Consensus 313 ~~vsp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 313 ANISPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred EEeCCchhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999986
No 5
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=2.1e-79 Score=683.49 Aligned_cols=320 Identities=39% Similarity=0.620 Sum_probs=294.1
Q ss_pred CCCCEEEEEEeCCCCCCcCCCCCCcEEEeCC--CceEEEecCCCCceeEeceeeCCCCChHHHHHh-hHHHHHHhhcCCC
Q 002847 7 IAGNIRVFCRIRPISMGENFGRLRPVIAKDS--SNVLLKLADNKSKNYSFDKVFHPGSSQDEVFSE-VEPVIKSVLDGYN 83 (874)
Q Consensus 7 ~kgnIrV~VRIRPl~~~E~~~~~~~vI~~d~--~~v~l~~~~~~~k~F~FD~VF~~~asQeeVF~~-V~PlV~svLdGyN 83 (874)
.-++|+|+||+||++..|...+...+..+.+ .++++..... .+.|.||+||.|+++|++||.. +.|+|++||.|||
T Consensus 5 ~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~~~-~~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~GYN 83 (607)
T KOG0240|consen 5 AECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLETTKE-TKTYVFDRVFSPNATQEDVYEFAAKPIVDDVLLGYN 83 (607)
T ss_pred CCCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEecccc-cccceeeeecCCCccHHHHHHHHHHHHHHHHhcccc
Confidence 4589999999999999887655555555544 3333332222 3899999999999999999998 7999999999999
Q ss_pred eeEEEeccCCCCcceeccCCCC---CCCcHHHHHHHHHHHHHhc--CCeeEEEEEEEEEecceeecccCCCCCCCCCCCC
Q 002847 84 ACIFAYGQTGTGKSFTMEGTPD---SPGIVPRAIEAIFKQAMES--NHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLP 158 (874)
Q Consensus 84 ~TIfAYGQTGSGKTyTM~Gs~e---~~GIIPRaledLF~~i~e~--~~~f~VsVS~lEIYNEkV~DLL~~~~~~~~~~~~ 158 (874)
+||||||||||||||||.|... ..|||||++++||+++... +..|+|+|||+|||+|+++|||++...
T Consensus 84 GTvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~k~------- 156 (607)
T KOG0240|consen 84 GTVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPEKT------- 156 (607)
T ss_pred eeEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCcccC-------
Confidence 9999999999999999999765 5699999999999999654 559999999999999999999986553
Q ss_pred CcceeeecCCCcEEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEecCCccccccceeEEE
Q 002847 159 PCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPERRREKNKIWLV 238 (874)
Q Consensus 159 ~~L~I~ed~~ggv~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~d~~e~~~~~SkL~LV 238 (874)
.+.+++|...+++|+|+++..|.+++++++++..|..+|+++.|+||..|||||+||+|+|.+.+........|+|+||
T Consensus 157 -nlsvheDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~~~~~~gkLyLV 235 (607)
T KOG0240|consen 157 -NLSVHEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVEDKRKLSGKLYLV 235 (607)
T ss_pred -CceeecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccchhhccccEEEE
Confidence 4889999999999999999999999999999999999999999999999999999999999999998888999999999
Q ss_pred eccCccccccccccchhhHHHHHhhhhHHHHHHHHHHHhcC-CCCccCCCCccccccccccCCCceeeEEEecCCCCCCH
Q 002847 239 DLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRR-KRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDL 317 (874)
Q Consensus 239 DLAGSER~~kt~a~G~rlkEg~~INkSLsALg~VI~ALs~k-~~hIPYRDSKLTrLLqDSLGGNSKT~mIa~ISPs~~~~ 317 (874)
||||||++.++++.|.-+.|+++||+||+|||+||+||+.+ +.|||||||||||||||+|||||+|.+|+|++|+.-+.
T Consensus 236 DLaGSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n~ 315 (607)
T KOG0240|consen 236 DLAGSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLNE 315 (607)
T ss_pred EcccccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCccccc
Confidence 99999999999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccc
Q 002847 318 CETICSLNFATRVKSVHL 335 (874)
Q Consensus 318 eETLsTLrFAsRAK~Ik~ 335 (874)
.||.+||+|++|||.|+.
T Consensus 316 ~ET~STl~fg~rak~ikN 333 (607)
T KOG0240|consen 316 AETKSTLRFGNRAKTIKN 333 (607)
T ss_pred cccccchhhccccccccc
Confidence 999999999999999984
No 6
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=2.6e-78 Score=659.55 Aligned_cols=316 Identities=38% Similarity=0.583 Sum_probs=281.7
Q ss_pred CCEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEEEecCCCCceeEeceeeCCCCChHHHHHh-hHHHHHHhhcCCCeeEE
Q 002847 9 GNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADNKSKNYSFDKVFHPGSSQDEVFSE-VEPVIKSVLDGYNACIF 87 (874)
Q Consensus 9 gnIrV~VRIRPl~~~E~~~~~~~vI~~d~~~v~l~~~~~~~k~F~FD~VF~~~asQeeVF~~-V~PlV~svLdGyN~TIf 87 (874)
.+|+|+|||||+...|.......++...+...++.. ..+.+.|.||+||+++++|++||+. ++|+|+++++|||+|||
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~~~~~-~~~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~n~ti~ 79 (337)
T cd01373 1 PAVKVVVRIRPPNEIEADGGQGQCLKKLSSDTLVWH-SHPPRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNGSIF 79 (337)
T ss_pred CCeEEEEEcCcCChhhcccCCCeEEEEcCCCcEEee-CCCCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCCceeEE
Confidence 489999999999998865444445555444333322 2336899999999999999999998 58999999999999999
Q ss_pred EeccCCCCcceeccCCCC--------CCCcHHHHHHHHHHHHHh------cCCeeEEEEEEEEEecceeecccCCCCCCC
Q 002847 88 AYGQTGTGKSFTMEGTPD--------SPGIVPRAIEAIFKQAME------SNHAFRISFSMLEIYLGSLKDLLVTQPTKA 153 (874)
Q Consensus 88 AYGQTGSGKTyTM~Gs~e--------~~GIIPRaledLF~~i~e------~~~~f~VsVS~lEIYNEkV~DLL~~~~~~~ 153 (874)
|||||||||||||+|+.. ++|||||++++||+.+.. ....|.|++||+|||||+|+|||++..
T Consensus 80 aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~~--- 156 (337)
T cd01373 80 AYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPTS--- 156 (337)
T ss_pred EeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCCC---
Confidence 999999999999999753 689999999999998753 245799999999999999999997543
Q ss_pred CCCCCCcceeeecCCCcEEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEecCCcc--ccc
Q 002847 154 TDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPER--RRE 231 (874)
Q Consensus 154 ~~~~~~~L~I~ed~~ggv~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~d~~e~--~~~ 231 (874)
..+.+++++.++++|.|++++.|.|++|++++|..|.++|++++|.+|..|||||+||+|+|.+.+.... ...
T Consensus 157 -----~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~ 231 (337)
T cd01373 157 -----RNLKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKASSTNIR 231 (337)
T ss_pred -----CCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCCCCcEE
Confidence 3488999999999999999999999999999999999999999999999999999999999987654322 345
Q ss_pred cceeEEEeccCccccccccccchhhHHHHHhhhhHHHHHHHHHHHhc----CCCCccCCCCccccccccccCCCceeeEE
Q 002847 232 KNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQR----RKRHVPYRNSKLTQVLKDSLGEDSKTLML 307 (874)
Q Consensus 232 ~SkL~LVDLAGSER~~kt~a~G~rlkEg~~INkSLsALg~VI~ALs~----k~~hIPYRDSKLTrLLqDSLGGNSKT~mI 307 (874)
.|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|+. +..|||||+||||+||+|+|||||+|+||
T Consensus 232 ~s~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~I 311 (337)
T cd01373 232 TSRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTII 311 (337)
T ss_pred EEEEEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEEEE
Confidence 79999999999999999999999999999999999999999999974 46899999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHhhcc
Q 002847 308 VHVSPKEDDLCETICSLNFATRVKSV 333 (874)
Q Consensus 308 a~ISPs~~~~eETLsTLrFAsRAK~I 333 (874)
+||||+..+++||++||+||+|||.|
T Consensus 312 ~~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 312 ANVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred EEECCCcccHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999986
No 7
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.8e-78 Score=708.41 Aligned_cols=351 Identities=36% Similarity=0.598 Sum_probs=300.9
Q ss_pred CCCEEEEEEeCCCCCCcCCCCCCc-EEEeCCCceEEEecCC-----CCceeEeceeeCCCCChHHHHHh-hHHHHHHhhc
Q 002847 8 AGNIRVFCRIRPISMGENFGRLRP-VIAKDSSNVLLKLADN-----KSKNYSFDKVFHPGSSQDEVFSE-VEPVIKSVLD 80 (874)
Q Consensus 8 kgnIrV~VRIRPl~~~E~~~~~~~-vI~~d~~~v~l~~~~~-----~~k~F~FD~VF~~~asQeeVF~~-V~PlV~svLd 80 (874)
..+|.|+||+||++..+...+..+ +...++...+...... ....|.||+||+++++|++||+. ++|+|.+||.
T Consensus 5 ~~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~ 84 (675)
T KOG0242|consen 5 EEKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSLPEKSKPEKYEFDRVFGEESTQEDVYERTTKPLLLSVLE 84 (675)
T ss_pred cceeEEEEEeCCCCccccccCCccceEecCCceeEeeccccccccccccceeeeeecCCCCCHHHHHHhccHHHHHHHhc
Confidence 468999999999998854333222 4444444443332211 13789999999999999999998 8999999999
Q ss_pred CCCeeEEEeccCCCCcceeccCCCCCCCcHHHHHHHHHHHHHh-cCCeeEEEEEEEEEecceeecccCCCCCCCCCCCCC
Q 002847 81 GYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAME-SNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPP 159 (874)
Q Consensus 81 GyN~TIfAYGQTGSGKTyTM~Gs~e~~GIIPRaledLF~~i~e-~~~~f~VsVS~lEIYNEkV~DLL~~~~~~~~~~~~~ 159 (874)
|||+||||||||||||||||.|.+++|||||+++.+||+.+.+ ....|.|.|||+|||||.|+|||++...
T Consensus 85 G~N~TVFAYG~TgSGKTyTM~G~~~~PGii~la~~dif~~I~~~~~r~f~v~vSYlEIYNE~I~DLL~~~~~-------- 156 (675)
T KOG0242|consen 85 GFNATVFAYGQTGSGKTYTMSGSEDDPGIIPLAMKDIFEKIDKSGEREFSVRVSYLEIYNERIRDLLNPDGG-------- 156 (675)
T ss_pred CcccceeeecCCCCCCceEEeccCCCCCeeehHHHHHHHHHHhcCCceeEEEEEEEEEeccccccccCCCCC--------
Confidence 9999999999999999999999999999999999999999865 4678999999999999999999977542
Q ss_pred cceeeecCCCcEEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEecCCccccccceeEEEe
Q 002847 160 CLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPERRREKNKIWLVD 239 (874)
Q Consensus 160 ~L~I~ed~~ggv~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~d~~e~~~~~SkL~LVD 239 (874)
.+.|++|+.+|++|.||+++.|.|+++++.+|..|..+|+++.|++|..|||||+||+|.|.+....... ..++|+|||
T Consensus 157 ~L~irED~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~~-~~s~L~lID 235 (675)
T KOG0242|consen 157 DLRLREDSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREASS-RVSKLNLID 235 (675)
T ss_pred CceEeEcCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEeccccccc-hhheehhhh
Confidence 3899999999999999999999999999999999999999999999999999999999999987654332 678999999
Q ss_pred ccCccccccccccchhhHHHHHhhhhHHHHHHHHHHHhcC--CCCccCCCCccccccccccCCCceeeEEEecCCCCCCH
Q 002847 240 LGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRR--KRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDL 317 (874)
Q Consensus 240 LAGSER~~kt~a~G~rlkEg~~INkSLsALg~VI~ALs~k--~~hIPYRDSKLTrLLqDSLGGNSKT~mIa~ISPs~~~~ 317 (874)
||||||+.++++.|.|++||.+||+||++||+||.+|+.+ ..||||||||||||||++|||||+|+|||||+|+..++
T Consensus 236 LAGSERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~ 315 (675)
T KOG0242|consen 236 LAGSERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHY 315 (675)
T ss_pred hhhhhhhhhhhccceeccccchhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHH
Confidence 9999999999999999999999999999999999999876 56899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002847 318 CETICSLNFATRVKSVHLGHEDSNEARDQKEVSMKNLQQKMKKIEEERLRVR 369 (874)
Q Consensus 318 eETLsTLrFAsRAK~Ik~~~~~~~~~~~~k~~~~~~Lqqkik~LeeE~~~lr 369 (874)
+||.+||+||+|||+|++.........+... ...++.++.+|+.++.+++
T Consensus 316 ~eT~nTL~fAsrak~i~~~~~~n~~~~~~~~--~~~~~~~i~~l~~e~~~~~ 365 (675)
T KOG0242|consen 316 EETKNTLKFASRAKEITTKAQVNVILSDKAL--LKYLQREIAELEAELERLK 365 (675)
T ss_pred HHHHHHHHHHHHhhhcccccccceecchhhh--hHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999976544332222221 2223555555555555433
No 8
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=3.4e-77 Score=708.85 Aligned_cols=345 Identities=33% Similarity=0.538 Sum_probs=294.4
Q ss_pred CCCEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEEEecCCCCceeEeceeeCCCCChHHHHHh-hHHHHHHhhcCCCeeE
Q 002847 8 AGNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADNKSKNYSFDKVFHPGSSQDEVFSE-VEPVIKSVLDGYNACI 86 (874)
Q Consensus 8 kgnIrV~VRIRPl~~~E~~~~~~~vI~~d~~~v~l~~~~~~~k~F~FD~VF~~~asQeeVF~~-V~PlV~svLdGyN~TI 86 (874)
.++|+|||||||+...|.. ...++...++.+.+ ..+.|.||+||+++++|++||+. +.|+|+++++|||+||
T Consensus 97 ds~VkV~VRVRPl~~~E~g--~~iV~~~s~dsl~I-----~~qtFtFD~VFdp~aTQedVFe~vv~PLV~svLdGyNaTI 169 (1320)
T PLN03188 97 DSGVKVIVRMKPLNKGEEG--EMIVQKMSNDSLTI-----NGQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNSSV 169 (1320)
T ss_pred CCCeEEEEEcCCCCCccCC--CeeEEEcCCCeEEE-----eCcEEeCCeeeCCCCCHHHHHHHHHHHHHHHHhcCCccee
Confidence 5799999999999988642 22233444444333 24789999999999999999998 5899999999999999
Q ss_pred EEeccCCCCcceeccCCC----------CCCCcHHHHHHHHHHHHHh-------cCCeeEEEEEEEEEecceeecccCCC
Q 002847 87 FAYGQTGTGKSFTMEGTP----------DSPGIVPRAIEAIFKQAME-------SNHAFRISFSMLEIYLGSLKDLLVTQ 149 (874)
Q Consensus 87 fAYGQTGSGKTyTM~Gs~----------e~~GIIPRaledLF~~i~e-------~~~~f~VsVS~lEIYNEkV~DLL~~~ 149 (874)
||||||||||||||+|+. .++|||||++++||+.+.. ....|.|+|||+|||||+|+|||++.
T Consensus 170 FAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DLLsp~ 249 (1320)
T PLN03188 170 FAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLDPS 249 (1320)
T ss_pred ecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcceeccccc
Confidence 999999999999999963 4689999999999998753 23479999999999999999999764
Q ss_pred CCCCCCCCCCcceeeecCCCcEEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEecCC---
Q 002847 150 PTKATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAP--- 226 (874)
Q Consensus 150 ~~~~~~~~~~~L~I~ed~~ggv~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~d~~--- 226 (874)
. ..+.|++++.++++|.||+++.|.++++++++|..|..+|++++|.+|..|||||+||+|+|++....
T Consensus 250 ~--------k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~~d 321 (1320)
T PLN03188 250 Q--------KNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVAD 321 (1320)
T ss_pred c--------CCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeecccCC
Confidence 3 24889999999999999999999999999999999999999999999999999999999999864321
Q ss_pred -ccccccceeEEEeccCccccccccccchhhHHHHHhhhhHHHHHHHHHHHhc-----CCCCccCCCCccccccccccCC
Q 002847 227 -ERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQR-----RKRHVPYRNSKLTQVLKDSLGE 300 (874)
Q Consensus 227 -e~~~~~SkL~LVDLAGSER~~kt~a~G~rlkEg~~INkSLsALg~VI~ALs~-----k~~hIPYRDSKLTrLLqDSLGG 300 (874)
......|+|+|||||||||..++++.|.+++|+++||+||++||+||.+|+. +..|||||+||||+||||+|||
T Consensus 322 g~ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTrLLQDSLGG 401 (1320)
T PLN03188 322 GLSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGG 401 (1320)
T ss_pred CCcceEEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHHHHHHhcCC
Confidence 2234579999999999999999999999999999999999999999999975 4579999999999999999999
Q ss_pred CceeeEEEecCCCCCCHHHHHHHHHHHHHhhccccCcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002847 301 DSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHLGHEDSNEARDQKEVSMKNLQQKMKKIEEERLRVRGE 371 (874)
Q Consensus 301 NSKT~mIa~ISPs~~~~eETLsTLrFAsRAK~Ik~~~~~~~~~~~~k~~~~~~Lqqkik~LeeE~~~lr~E 371 (874)
||+|+|||||||+..+++||++||+||+|||.|++.+.......+ ....|++.+++|++|+.+++..
T Consensus 402 NSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~~----~vn~LrelIr~Lk~EL~rLK~~ 468 (1320)
T PLN03188 402 NAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQD----DVNFLREVIRQLRDELQRVKAN 468 (1320)
T ss_pred CceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccchhh----hHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999976643322211 1234555566666666555543
No 9
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=7.7e-77 Score=650.05 Aligned_cols=316 Identities=32% Similarity=0.552 Sum_probs=283.2
Q ss_pred CEEEEEEeCCCCCCcCCCCCCcEEEeCCC-ceEEEec------------CCCCceeEeceeeCCCCChHHHHHh-hHHHH
Q 002847 10 NIRVFCRIRPISMGENFGRLRPVIAKDSS-NVLLKLA------------DNKSKNYSFDKVFHPGSSQDEVFSE-VEPVI 75 (874)
Q Consensus 10 nIrV~VRIRPl~~~E~~~~~~~vI~~d~~-~v~l~~~------------~~~~k~F~FD~VF~~~asQeeVF~~-V~PlV 75 (874)
+|+|||||||+...|......+++.+.+. .+.+... ....+.|.||+||+++++|++||+. +.|+|
T Consensus 2 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p~v 81 (345)
T cd01368 2 PVKVYLRVRPLSKDELESEDEGCIEVINSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALPLV 81 (345)
T ss_pred CEEEEEEeCcCCchhhccCCCceEEEcCCCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHHHH
Confidence 79999999999998865444555544444 3443322 1246789999999999999999998 58999
Q ss_pred HHhhcCCCeeEEEeccCCCCcceeccCCCCCCCcHHHHHHHHHHHHHhcCCeeEEEEEEEEEecceeecccCCCCCCCCC
Q 002847 76 KSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAMESNHAFRISFSMLEIYLGSLKDLLVTQPTKATD 155 (874)
Q Consensus 76 ~svLdGyN~TIfAYGQTGSGKTyTM~Gs~e~~GIIPRaledLF~~i~e~~~~f~VsVS~lEIYNEkV~DLL~~~~~~~~~ 155 (874)
+++++|||+||||||||||||||||+|++.++|||||++++||+.+.. |.|++||+|||||+|+|||++.....
T Consensus 82 ~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~~Gli~r~~~~lF~~~~~----~~v~~S~~EIyne~v~DLL~~~~~~~-- 155 (345)
T cd01368 82 QDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFNSIGG----YSVFVSYVEIYNNYIYDLLEDSPSST-- 155 (345)
T ss_pred HHHhCCCceEEEEeCCCCCCCeEEecCCCCCCchHHHHHHHHHHHHHh----eeEEEEEEEEeCCEeEeCCCCccccc--
Confidence 999999999999999999999999999999999999999999998866 99999999999999999998765421
Q ss_pred CCCCcceeeecCCCcEEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEecCCc--------
Q 002847 156 PLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPE-------- 227 (874)
Q Consensus 156 ~~~~~L~I~ed~~ggv~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~d~~e-------- 227 (874)
.....+.+++++.++++|.|++++.|.|++|++++|..|.++|.+++|.+|..|||||+||+|+|.+.+...
T Consensus 156 ~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~~~~~ 235 (345)
T cd01368 156 KKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVDQDK 235 (345)
T ss_pred cCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCcccccccCC
Confidence 123458999999999999999999999999999999999999999999999999999999999998765432
Q ss_pred cccccceeEEEeccCccccccccccchhhHHHHHhhhhHHHHHHHHHHHhc------CCCCccCCCCccccccccccCCC
Q 002847 228 RRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQR------RKRHVPYRNSKLTQVLKDSLGED 301 (874)
Q Consensus 228 ~~~~~SkL~LVDLAGSER~~kt~a~G~rlkEg~~INkSLsALg~VI~ALs~------k~~hIPYRDSKLTrLLqDSLGGN 301 (874)
.....|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|+. +..|||||+||||+||+|+||||
T Consensus 236 ~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~l~g~ 315 (345)
T cd01368 236 DQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYFDGE 315 (345)
T ss_pred CceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHhcCCC
Confidence 345679999999999999999999999999999999999999999999986 56899999999999999999999
Q ss_pred ceeeEEEecCCCCCCHHHHHHHHHHHHHhh
Q 002847 302 SKTLMLVHVSPKEDDLCETICSLNFATRVK 331 (874)
Q Consensus 302 SKT~mIa~ISPs~~~~eETLsTLrFAsRAK 331 (874)
|+|+||+||||+..+++||++||+||.+|+
T Consensus 316 s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 316 GKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred CeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999985
No 10
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=1.7e-75 Score=640.98 Aligned_cols=324 Identities=37% Similarity=0.573 Sum_probs=295.7
Q ss_pred CCEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEEEecC------CCCceeEeceeeCCC-------CChHHHHHh-hHHH
Q 002847 9 GNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLAD------NKSKNYSFDKVFHPG-------SSQDEVFSE-VEPV 74 (874)
Q Consensus 9 gnIrV~VRIRPl~~~E~~~~~~~vI~~d~~~v~l~~~~------~~~k~F~FD~VF~~~-------asQeeVF~~-V~Pl 74 (874)
+||+|+||+||++..|...+...++.+++..+.+.... ...+.|.||+||++. ++|++||+. +.|+
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p~ 80 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPGKVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGREL 80 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECCCEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHHHH
Confidence 58999999999999887666667788888777666543 346789999999998 999999998 6899
Q ss_pred HHHhhcCCCeeEEEeccCCCCcceeccCCCCCCCcHHHHHHHHHHHHHhc---CCeeEEEEEEEEEecceeecccCCCCC
Q 002847 75 IKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAMES---NHAFRISFSMLEIYLGSLKDLLVTQPT 151 (874)
Q Consensus 75 V~svLdGyN~TIfAYGQTGSGKTyTM~Gs~e~~GIIPRaledLF~~i~e~---~~~f~VsVS~lEIYNEkV~DLL~~~~~ 151 (874)
|+++++|||+||||||||||||||||+|+..++|||||++++||+.+... ...|.|++||+|||||+|+|||++...
T Consensus 81 v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~ 160 (356)
T cd01365 81 LDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPKKK 160 (356)
T ss_pred HHHHhCCCceEEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCCCCcc
Confidence 99999999999999999999999999999999999999999999988654 458999999999999999999987641
Q ss_pred CCCCCCCCcceeeecCCCcEEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEecCC----c
Q 002847 152 KATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAP----E 227 (874)
Q Consensus 152 ~~~~~~~~~L~I~ed~~ggv~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~d~~----e 227 (874)
....+.+++++.++++|+|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+.+.. .
T Consensus 161 -----~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~~~ 235 (356)
T cd01365 161 -----NKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDL 235 (356)
T ss_pred -----CCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCCCC
Confidence 2245889999999999999999999999999999999999999999999999999999999999876543 3
Q ss_pred cccccceeEEEeccCccccccccccchhhHHHHHhhhhHHHHHHHHHHHhcC--------CCCccCCCCccccccccccC
Q 002847 228 RRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRR--------KRHVPYRNSKLTQVLKDSLG 299 (874)
Q Consensus 228 ~~~~~SkL~LVDLAGSER~~kt~a~G~rlkEg~~INkSLsALg~VI~ALs~k--------~~hIPYRDSKLTrLLqDSLG 299 (874)
.....|+|+|||||||||..+++..+.+++|+.+||+||++|++||.+|+.+ ..|||||+||||+||+++||
T Consensus 236 ~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lg 315 (356)
T cd01365 236 TTEKVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLG 315 (356)
T ss_pred CceEEEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHhcC
Confidence 4557899999999999999999999999999999999999999999999763 58999999999999999999
Q ss_pred CCceeeEEEecCCCCCCHHHHHHHHHHHHHhhccccCc
Q 002847 300 EDSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHLGH 337 (874)
Q Consensus 300 GNSKT~mIa~ISPs~~~~eETLsTLrFAsRAK~Ik~~~ 337 (874)
|||+|+||+||||+..+++||++||+||+|+++|++.+
T Consensus 316 g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~ 353 (356)
T cd01365 316 GNSKTAMIATISPADINYEETLSTLRYADRAKKIVNVA 353 (356)
T ss_pred CCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCcc
Confidence 99999999999999999999999999999999998765
No 11
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=1.8e-75 Score=633.40 Aligned_cols=311 Identities=36% Similarity=0.523 Sum_probs=284.4
Q ss_pred CCEEEEEEeCCCCCCcCCCCCCcEEEeCCC-ceEEEecC--------CCCceeEeceeeCCCCChHHHHHh-hHHHHHHh
Q 002847 9 GNIRVFCRIRPISMGENFGRLRPVIAKDSS-NVLLKLAD--------NKSKNYSFDKVFHPGSSQDEVFSE-VEPVIKSV 78 (874)
Q Consensus 9 gnIrV~VRIRPl~~~E~~~~~~~vI~~d~~-~v~l~~~~--------~~~k~F~FD~VF~~~asQeeVF~~-V~PlV~sv 78 (874)
.+|+|+|||||+...|...+...++.++++ .+.+.... ...+.|.||+||+++++|++||+. ++|+|+.+
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~ 80 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPHV 80 (322)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEECCCCEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHHH
Confidence 489999999999998875555566777665 33333111 125789999999999999999998 69999999
Q ss_pred hcCCCeeEEEeccCCCCcceeccCCCCCCCcHHHHHHHHHHHHHhcCCeeEEEEEEEEEecceeecccCCCCCCCCCCCC
Q 002847 79 LDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAMESNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLP 158 (874)
Q Consensus 79 LdGyN~TIfAYGQTGSGKTyTM~Gs~e~~GIIPRaledLF~~i~e~~~~f~VsVS~lEIYNEkV~DLL~~~~~~~~~~~~ 158 (874)
++|||+||||||||||||||||+|+.+++|||||++++||+.+......|.|++||+|||||+|+|||++.
T Consensus 81 ~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Glipr~~~~lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~--------- 151 (322)
T cd01367 81 FEGGVATCFAYGQTGSGKTYTMLGDENQEGLYALAARDIFRLLAQPNDDLGVTVSFFEIYGGKLFDLLNDR--------- 151 (322)
T ss_pred hCCCceEEEeccCCCCCCceEecCcCCcCccHHHHHHHHHHHHhccccccEEEEEEEeeecCchhhhccCc---------
Confidence 99999999999999999999999999999999999999999998777889999999999999999999762
Q ss_pred CcceeeecCCCcEEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEecCCccccccceeEEE
Q 002847 159 PCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPERRREKNKIWLV 238 (874)
Q Consensus 159 ~~L~I~ed~~ggv~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~d~~e~~~~~SkL~LV 238 (874)
+.+.+++++.++++|.|++++.|.|++|++++|..|.++|.+++|.+|..|||||+||+|+|.+.+. ....|+|+||
T Consensus 152 ~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~---~~~~s~l~~v 228 (322)
T cd01367 152 KRLSVLEDGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL---NKLLGKLSFI 228 (322)
T ss_pred cceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC---CeeEEEEEEe
Confidence 3488999999999999999999999999999999999999999999999999999999999988765 4568999999
Q ss_pred eccCcccccccc-ccchhhHHHHHhhhhHHHHHHHHHHHhcCCCCccCCCCccccccccccCCCceeeEEEecCCCCCCH
Q 002847 239 DLGGSERVLKTK-ARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDL 317 (874)
Q Consensus 239 DLAGSER~~kt~-a~G~rlkEg~~INkSLsALg~VI~ALs~k~~hIPYRDSKLTrLLqDSLGGNSKT~mIa~ISPs~~~~ 317 (874)
|||||||...+. ..+.+++|+.+||+||++|++||.+|+.++.||||||||||+||+|+|||||+|+||+||||+..++
T Consensus 229 DLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~ 308 (322)
T cd01367 229 DLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNKAHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSC 308 (322)
T ss_pred ecCCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhH
Confidence 999999998765 4688999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 002847 318 CETICSLNFATRVK 331 (874)
Q Consensus 318 eETLsTLrFAsRAK 331 (874)
+||++||+||+|+|
T Consensus 309 ~eTl~tL~fa~r~k 322 (322)
T cd01367 309 EHTLNTLRYADRVK 322 (322)
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999999986
No 12
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=3e-76 Score=688.06 Aligned_cols=332 Identities=48% Similarity=0.745 Sum_probs=303.9
Q ss_pred cccccCCCCEEEEEEeCCCCCCcCCCCCCcEEEeCCC-ceEEEecCCCCc----eeEeceeeCCCCChHHHHHhhHHHHH
Q 002847 2 LIVSAIAGNIRVFCRIRPISMGENFGRLRPVIAKDSS-NVLLKLADNKSK----NYSFDKVFHPGSSQDEVFSEVEPVIK 76 (874)
Q Consensus 2 ~~v~~~kgnIrV~VRIRPl~~~E~~~~~~~vI~~d~~-~v~l~~~~~~~k----~F~FD~VF~~~asQeeVF~~V~PlV~ 76 (874)
+.+.+++|||||||||||+...+.......++..++. .+.+.......+ .|.||+||+|.++|++||.++.|+|+
T Consensus 307 N~i~eLkGnIRV~CRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF~e~~~lv~ 386 (670)
T KOG0239|consen 307 NEILELKGNIRVFCRVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVFEEVSPLVQ 386 (670)
T ss_pred HHHHHhhcCceEEEEecCCCccccccccccccccCCcceeEeecCCCCCCCccccceeeeecCCcccHHHHHHHHHHHHH
Confidence 5688999999999999999999876544445555443 344444333322 49999999999999999999999999
Q ss_pred HhhcCCCeeEEEeccCCCCcceeccC-CCCCCCcHHHHHHHHHHHHHh--cCCeeEEEEEEEEEecceeecccCCCCCCC
Q 002847 77 SVLDGYNACIFAYGQTGTGKSFTMEG-TPDSPGIVPRAIEAIFKQAME--SNHAFRISFSMLEIYLGSLKDLLVTQPTKA 153 (874)
Q Consensus 77 svLdGyN~TIfAYGQTGSGKTyTM~G-s~e~~GIIPRaledLF~~i~e--~~~~f~VsVS~lEIYNEkV~DLL~~~~~~~ 153 (874)
++|+|||+||||||||||||||||.| +++++|||||+++.||..+.. .+..|.+.+||+|||||.|+|||++..
T Consensus 387 S~lDGYnVCIFAYGQTGSGKTyTM~G~~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~--- 463 (670)
T KOG0239|consen 387 SALDGYNVCIFAYGQTGSGKTYTMSGPTPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDES--- 463 (670)
T ss_pred HHhcCcceeEEEecccCCCccccccCCCcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhccccc---
Confidence 99999999999999999999999999 799999999999999998754 357999999999999999999997764
Q ss_pred CCCCCCcceeeecCCCcEEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEecCCccccccc
Q 002847 154 TDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPERRREKN 233 (874)
Q Consensus 154 ~~~~~~~L~I~ed~~ggv~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~d~~e~~~~~S 233 (874)
.+..+.|+.++++...|.+++.+.|.+.+++..+++.|..+|++++|.+|++|||||+||+|+|...+...+....+
T Consensus 464 ---~~~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~~t~~~~~g 540 (670)
T KOG0239|consen 464 ---YVGKLEIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGINELTGIRVTG 540 (670)
T ss_pred ---cccceeEEEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEeccccCccccccc
Confidence 23558999999999999999999999999999999999999999999999999999999999999988888888999
Q ss_pred eeEEEeccCccccccccccchhhHHHHHhhhhHHHHHHHHHHHhcCCCCccCCCCccccccccccCCCceeeEEEecCCC
Q 002847 234 KIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPK 313 (874)
Q Consensus 234 kL~LVDLAGSER~~kt~a~G~rlkEg~~INkSLsALg~VI~ALs~k~~hIPYRDSKLTrLLqDSLGGNSKT~mIa~ISPs 313 (874)
.|+|||||||||+.++++.|.|++|+.+||+||++||+||.||+.+..||||||||||+||+++|||++||+|+++|||.
T Consensus 541 ~l~LVDLAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~k~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~ 620 (670)
T KOG0239|consen 541 VLNLVDLAGSERVSKSGVTGERLKEAQNINKSLSALGDVISALASKRSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPA 620 (670)
T ss_pred ceeEeecccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhhcCCCCcccccchHHHhHhhhCCccceeeEEEeCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhccccCcCC
Q 002847 314 EDDLCETICSLNFATRVKSVHLGHED 339 (874)
Q Consensus 314 ~~~~eETLsTLrFAsRAK~Ik~~~~~ 339 (874)
.+++.||+++|+||+|++.+.+++..
T Consensus 621 ~~~~~Etl~sL~FA~rv~~~~lG~a~ 646 (670)
T KOG0239|consen 621 AAALFETLCSLRFATRVRSVELGSAR 646 (670)
T ss_pred HHHHhhhhhccchHHHhhceeccccc
Confidence 99999999999999999999987643
No 13
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=2.6e-74 Score=630.13 Aligned_cols=325 Identities=41% Similarity=0.613 Sum_probs=293.6
Q ss_pred CCEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEEEecC-----CCCceeEeceeeCCCCChHHHHHh-hHHHHHHhhcCC
Q 002847 9 GNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLAD-----NKSKNYSFDKVFHPGSSQDEVFSE-VEPVIKSVLDGY 82 (874)
Q Consensus 9 gnIrV~VRIRPl~~~E~~~~~~~vI~~d~~~v~l~~~~-----~~~k~F~FD~VF~~~asQeeVF~~-V~PlV~svLdGy 82 (874)
+||+|+||+||+...|.......++.+++....+.... ...+.|.||+||+++++|++||+. +.|+|+++++||
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G~ 81 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGADKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMGY 81 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCcccccceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 69999999999999887666666777766533333322 246889999999999999999998 699999999999
Q ss_pred CeeEEEeccCCCCcceeccCCC-----------CCCCcHHHHHHHHHHHHHhcCCeeEEEEEEEEEecceeecccCCCCC
Q 002847 83 NACIFAYGQTGTGKSFTMEGTP-----------DSPGIVPRAIEAIFKQAMESNHAFRISFSMLEIYLGSLKDLLVTQPT 151 (874)
Q Consensus 83 N~TIfAYGQTGSGKTyTM~Gs~-----------e~~GIIPRaledLF~~i~e~~~~f~VsVS~lEIYNEkV~DLL~~~~~ 151 (874)
|+||||||||||||||||+|+. +.+|||||++++||+.+......|.|++||+|||||+|+|||++...
T Consensus 82 n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~ 161 (352)
T cd01364 82 NCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQNTEYSVKVSYLELYNEELFDLLSSESD 161 (352)
T ss_pred eEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhccceeEEEEEEEEeeCCeeeeCCCCccc
Confidence 9999999999999999999974 34899999999999999888889999999999999999999987541
Q ss_pred CCCCCCCCcceeeec--CCCcEEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEecCC---
Q 002847 152 KATDPLPPCLSIHTE--PKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAP--- 226 (874)
Q Consensus 152 ~~~~~~~~~L~I~ed--~~ggv~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~d~~--- 226 (874)
..+.+.++++ ..++++|.|++++.|.+++|++++|..|.++|.+++|.+|..|||||+||+|+|.+.+..
T Consensus 162 -----~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~~~ 236 (352)
T cd01364 162 -----LNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTISG 236 (352)
T ss_pred -----cCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCCCC
Confidence 1245889999 589999999999999999999999999999999999999999999999999999876543
Q ss_pred ccccccceeEEEeccCccccccccccchhhHHHHHhhhhHHHHHHHHHHHhcCCCCccCCCCccccccccccCCCceeeE
Q 002847 227 ERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVLKDSLGEDSKTLM 306 (874)
Q Consensus 227 e~~~~~SkL~LVDLAGSER~~kt~a~G~rlkEg~~INkSLsALg~VI~ALs~k~~hIPYRDSKLTrLLqDSLGGNSKT~m 306 (874)
......|+|+||||||||+..+.++.+.+++|+..||+||.+|++||.+|+.+..|||||+||||+||+|+|||||+|+|
T Consensus 237 ~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~~~vpyR~S~LT~lL~~~Lgg~s~t~~ 316 (352)
T cd01364 237 EELVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKSPHIPYRESKLTRLLQDSLGGRTKTSI 316 (352)
T ss_pred CccEEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhcCCCceEEE
Confidence 23345799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHhhccccCcC
Q 002847 307 LVHVSPKEDDLCETICSLNFATRVKSVHLGHE 338 (874)
Q Consensus 307 Ia~ISPs~~~~eETLsTLrFAsRAK~Ik~~~~ 338 (874)
|+||||+..+++||++||+||+|+++|++.|.
T Consensus 317 I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~ 348 (352)
T cd01364 317 IATISPASINLEETLSTLEYAHRAKNIKNKPE 348 (352)
T ss_pred EEEeCCCcccHHHHHHHHHHHHHHhhccCccc
Confidence 99999999999999999999999999997663
No 14
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=3.7e-74 Score=622.36 Aligned_cols=317 Identities=39% Similarity=0.679 Sum_probs=291.8
Q ss_pred CCEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEEEecCCCCceeEeceeeCCCCChHHHHHh-hHHHHHHhhcCCCeeEE
Q 002847 9 GNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADNKSKNYSFDKVFHPGSSQDEVFSE-VEPVIKSVLDGYNACIF 87 (874)
Q Consensus 9 gnIrV~VRIRPl~~~E~~~~~~~vI~~d~~~v~l~~~~~~~k~F~FD~VF~~~asQeeVF~~-V~PlV~svLdGyN~TIf 87 (874)
.+|+|+|||||+...|.......++...+...+........+.|.||+||+++++|++||+. ++|+|+++++|+|+|||
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~v~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~n~~i~ 81 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGEDTVSIAGSDDGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYNGTIF 81 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEcCCCEEEecCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCccceEE
Confidence 48999999999999886555566777766644433334557899999999999999999998 69999999999999999
Q ss_pred EeccCCCCcceeccCCCC---CCCcHHHHHHHHHHHHHhc--CCeeEEEEEEEEEecceeecccCCCCCCCCCCCCCcce
Q 002847 88 AYGQTGTGKSFTMEGTPD---SPGIVPRAIEAIFKQAMES--NHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLS 162 (874)
Q Consensus 88 AYGQTGSGKTyTM~Gs~e---~~GIIPRaledLF~~i~e~--~~~f~VsVS~lEIYNEkV~DLL~~~~~~~~~~~~~~L~ 162 (874)
|||||||||||||+|++. ++||+||++++||+.+... +..|.|++||+|||+|+++|||++.. ..+.
T Consensus 82 ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~--------~~l~ 153 (325)
T cd01369 82 AYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVSK--------DNLQ 153 (325)
T ss_pred EeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCcc--------CCce
Confidence 999999999999999987 8999999999999998653 45799999999999999999997652 2478
Q ss_pred eeecCCCcEEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEecCCccccccceeEEEeccC
Q 002847 163 IHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPERRREKNKIWLVDLGG 242 (874)
Q Consensus 163 I~ed~~ggv~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~d~~e~~~~~SkL~LVDLAG 242 (874)
+++++.++++++|++++.|.|++|++.+|..|.++|++++|.+|..|||||+||+|+|.+.+........|+|+||||||
T Consensus 154 i~~~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~s~l~~VDLAG 233 (325)
T cd01369 154 VHEDKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVETGSKKRGKLFLVDLAG 233 (325)
T ss_pred EEEcCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecCCCCEEEEEEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999887766677899999999999
Q ss_pred ccccccccccchhhHHHHHhhhhHHHHHHHHHHHhcCC-CCccCCCCccccccccccCCCceeeEEEecCCCCCCHHHHH
Q 002847 243 SERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRK-RHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETI 321 (874)
Q Consensus 243 SER~~kt~a~G~rlkEg~~INkSLsALg~VI~ALs~k~-~hIPYRDSKLTrLLqDSLGGNSKT~mIa~ISPs~~~~eETL 321 (874)
||+..++++.|.+++|+..||+||++|++||.+|+.++ .|||||+||||+||+++|||+|+|+||+||||+..+++||+
T Consensus 234 sE~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~eTl 313 (325)
T cd01369 234 SEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESETL 313 (325)
T ss_pred CCcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHHHHH
Confidence 99999999999999999999999999999999999887 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcc
Q 002847 322 CSLNFATRVKSV 333 (874)
Q Consensus 322 sTLrFAsRAK~I 333 (874)
+||+||+|||+|
T Consensus 314 ~TL~~a~r~~~i 325 (325)
T cd01369 314 STLRFGARAKTI 325 (325)
T ss_pred HHHHHHHHhhcC
Confidence 999999999986
No 15
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=4e-74 Score=621.88 Aligned_cols=311 Identities=35% Similarity=0.552 Sum_probs=281.6
Q ss_pred CEEEEEEeCCCCCCcCCCCCCcEEEeCCC-----ceEEEec--CCCCceeEeceeeCCCCChHHHHHh-hHHHHHHhhcC
Q 002847 10 NIRVFCRIRPISMGENFGRLRPVIAKDSS-----NVLLKLA--DNKSKNYSFDKVFHPGSSQDEVFSE-VEPVIKSVLDG 81 (874)
Q Consensus 10 nIrV~VRIRPl~~~E~~~~~~~vI~~d~~-----~v~l~~~--~~~~k~F~FD~VF~~~asQeeVF~~-V~PlV~svLdG 81 (874)
||+|+|||||+...|... ..++...+.. .+.+... ....+.|.||+||+++++|++||+. +.|+|+++++|
T Consensus 1 ~i~V~vRvRP~~~~e~~~-~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G 79 (319)
T cd01376 1 NVRVVVRVRPFLDCEEDS-SSCVRGIDSDQGQAKSVEIENPRNRGETKKYQFDAFYGTECTQEDIFSREVKPIVPHLLSG 79 (319)
T ss_pred CcEEEEEeCcCCccccCC-CceEEEeCCCCCcceEEEEeCCCCCCCccEEecCeEECCCCCHHHHHHHHHHHHHHHHhCC
Confidence 799999999999888432 2223233331 2333222 2246889999999999999999998 79999999999
Q ss_pred CCeeEEEeccCCCCcceeccCCCCCCCcHHHHHHHHHHHHHhcCCeeEEEEEEEEEecceeecccCCCCCCCCCCCCCcc
Q 002847 82 YNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAMESNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCL 161 (874)
Q Consensus 82 yN~TIfAYGQTGSGKTyTM~Gs~e~~GIIPRaledLF~~i~e~~~~f~VsVS~lEIYNEkV~DLL~~~~~~~~~~~~~~L 161 (874)
||+||||||||||||||||+|++.++|||||++++||+.+......|.|++||+|||||+|+|||++.. ..+
T Consensus 80 ~n~~i~ayG~tgSGKTyTm~G~~~~~Glipr~~~~Lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~--------~~l 151 (319)
T cd01376 80 QNATVFAYGSTGAGKTHTMLGDPNEPGLIPRTLSDLLRMGRKQAWTGAFSMSYYEIYNEKVYDLLEPAK--------KEL 151 (319)
T ss_pred CceEEEEECCCCCCCcEEEeCCcCccchHHHHHHHHHHHHhhccccceEEEEEEEEECCEeeEccCCCC--------CCc
Confidence 999999999999999999999999999999999999999887778899999999999999999997642 347
Q ss_pred eeeecCCCcEEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEecCCccccccceeEEEecc
Q 002847 162 SIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPERRREKNKIWLVDLG 241 (874)
Q Consensus 162 ~I~ed~~ggv~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~d~~e~~~~~SkL~LVDLA 241 (874)
.|++++.+++++.|++++.|.+++|+++++..|.++|.+++|.+|..|||||+||+|+|.+.+.. ....|+|+|||||
T Consensus 152 ~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~--~~~~s~l~~VDLA 229 (319)
T cd01376 152 PIREDKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPASN--IQLEGKLNLIDLA 229 (319)
T ss_pred eEEEcCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECCC--ceEEEEEEEEECC
Confidence 89999999999999999999999999999999999999999999999999999999999887543 3568999999999
Q ss_pred CccccccccccchhhHHHHHhhhhHHHHHHHHHHHhcCCCCccCCCCccccccccccCCCceeeEEEecCCCCCCHHHHH
Q 002847 242 GSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETI 321 (874)
Q Consensus 242 GSER~~kt~a~G~rlkEg~~INkSLsALg~VI~ALs~k~~hIPYRDSKLTrLLqDSLGGNSKT~mIa~ISPs~~~~eETL 321 (874)
||||..+++..|.+++|+.+||+||++|++||.+|+.+..|||||+||||+||+|+|||||+|+||+||||...+++||+
T Consensus 230 GsE~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl 309 (319)
T cd01376 230 GSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKGLPRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTL 309 (319)
T ss_pred CCCcccccCCccchhhhhhhhhhhHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 002847 322 CSLNFATRVK 331 (874)
Q Consensus 322 sTLrFAsRAK 331 (874)
+||+||+|||
T Consensus 310 ~TL~fa~r~~ 319 (319)
T cd01376 310 STLNFASRSK 319 (319)
T ss_pred HHHHHHHhhC
Confidence 9999999986
No 16
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=5.5e-74 Score=624.05 Aligned_cols=318 Identities=41% Similarity=0.663 Sum_probs=287.8
Q ss_pred CCEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEEEecC------CCCceeEeceeeCCCCChHHHHHh-hHHHHHHhhcC
Q 002847 9 GNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLAD------NKSKNYSFDKVFHPGSSQDEVFSE-VEPVIKSVLDG 81 (874)
Q Consensus 9 gnIrV~VRIRPl~~~E~~~~~~~vI~~d~~~v~l~~~~------~~~k~F~FD~VF~~~asQeeVF~~-V~PlV~svLdG 81 (874)
.||+|+|||||+...|...+...++..+.....+.... ...+.|.||+||+++++|++||+. +.|+|+++++|
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G 80 (333)
T cd01371 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVLEG 80 (333)
T ss_pred CCeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcccccCCCceeeeccccCCCccHHHHHHHHHHHHHHHHhCC
Confidence 48999999999998886655555666655444333321 346789999999999999999998 69999999999
Q ss_pred CCeeEEEeccCCCCcceeccCCCC---CCCcHHHHHHHHHHHHHh-cCCeeEEEEEEEEEecceeecccCCCCCCCCCCC
Q 002847 82 YNACIFAYGQTGTGKSFTMEGTPD---SPGIVPRAIEAIFKQAME-SNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPL 157 (874)
Q Consensus 82 yN~TIfAYGQTGSGKTyTM~Gs~e---~~GIIPRaledLF~~i~e-~~~~f~VsVS~lEIYNEkV~DLL~~~~~~~~~~~ 157 (874)
||+||||||||||||||||+|+.. ++|||||++++||+.+.. ....|.|++||+|||||+|+|||.+...
T Consensus 81 ~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~------ 154 (333)
T cd01371 81 YNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAENVQFLVRVSYLEIYNEEVRDLLGKDQK------ 154 (333)
T ss_pred CceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhccCccEEEEEEEEEeeCCeeeeCCCCCCC------
Confidence 999999999999999999999887 899999999999998865 3478999999999999999999976432
Q ss_pred CCcceeeecCCCcEEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEecCC---ccccccce
Q 002847 158 PPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAP---ERRREKNK 234 (874)
Q Consensus 158 ~~~L~I~ed~~ggv~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~d~~---e~~~~~Sk 234 (874)
..+.+++++.++++|.|++++.|.+++++..+|..|.++|.+++|.+|..|||||+||+|+|++.+.. ......|+
T Consensus 155 -~~l~i~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~ 233 (333)
T cd01371 155 -KKLELKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENHIRVGK 233 (333)
T ss_pred -CceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCCCCCcEEEEE
Confidence 34889999999999999999999999999999999999999999999999999999999999987653 34456799
Q ss_pred eEEEeccCccccccccccchhhHHHHHhhhhHHHHHHHHHHHhcCCC-CccCCCCccccccccccCCCceeeEEEecCCC
Q 002847 235 IWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKR-HVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPK 313 (874)
Q Consensus 235 L~LVDLAGSER~~kt~a~G~rlkEg~~INkSLsALg~VI~ALs~k~~-hIPYRDSKLTrLLqDSLGGNSKT~mIa~ISPs 313 (874)
|+|||||||||..+++..+.+++|+..||+||.+|++||.+|+.++. |||||+||||+||+++|||||+|+||+||+|.
T Consensus 234 L~~VDLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~ 313 (333)
T cd01371 234 LNLVDLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPA 313 (333)
T ss_pred EEEEECCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCc
Confidence 99999999999999999999999999999999999999999998775 99999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcc
Q 002847 314 EDDLCETICSLNFATRVKSV 333 (874)
Q Consensus 314 ~~~~eETLsTLrFAsRAK~I 333 (874)
..+++||++||+||+|||+|
T Consensus 314 ~~~~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 314 DYNYDETLSTLRYANRAKNI 333 (333)
T ss_pred cccHHHHHHHHHHHHHhhcC
Confidence 99999999999999999986
No 17
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=7.5e-74 Score=619.47 Aligned_cols=314 Identities=37% Similarity=0.601 Sum_probs=287.8
Q ss_pred CEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEEEecCCCCceeEeceeeCCCCChHHHHHh-hHHHHHHhhcCCCeeEEE
Q 002847 10 NIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADNKSKNYSFDKVFHPGSSQDEVFSE-VEPVIKSVLDGYNACIFA 88 (874)
Q Consensus 10 nIrV~VRIRPl~~~E~~~~~~~vI~~d~~~v~l~~~~~~~k~F~FD~VF~~~asQeeVF~~-V~PlV~svLdGyN~TIfA 88 (874)
||+|+||+||+...|.. ...+++.++++..++.......+.|.||+||+++++|++||+. +.|+|+++++|+|+||||
T Consensus 1 ~V~V~vRvRP~~~~e~~-~~~~~~~~~~~~~v~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~~i~a 79 (321)
T cd01374 1 KIKVSVRVRPLNPRESD-NEQVAWSIDNDNTISLEESTPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNGTIFA 79 (321)
T ss_pred CeEEEEEcCcCCccccc-CCcceEEECCCCEEEEcCCCCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCceeEEe
Confidence 79999999999998863 3345666666644444444567899999999999999999998 699999999999999999
Q ss_pred eccCCCCcceeccCCCCCCCcHHHHHHHHHHHHHh-cCCeeEEEEEEEEEecceeecccCCCCCCCCCCCCCcceeeecC
Q 002847 89 YGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAME-SNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEP 167 (874)
Q Consensus 89 YGQTGSGKTyTM~Gs~e~~GIIPRaledLF~~i~e-~~~~f~VsVS~lEIYNEkV~DLL~~~~~~~~~~~~~~L~I~ed~ 167 (874)
||||||||||||+|+..++|||||++++||+.+.+ ....|.|++||+|||||+|+|||++.. ..+.+++++
T Consensus 80 yG~tgSGKT~T~~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~--------~~l~i~~~~ 151 (321)
T cd01374 80 YGQTSSGKTFTMSGDEQEPGIIPLAVRDIFQRIQDTPDREFLLRVSYLEIYNEKIKDLLSPSP--------QELRIREDP 151 (321)
T ss_pred ecCCCCCCceeccCCCCCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEEcCEeEEccCCCC--------CCceEEECC
Confidence 99999999999999999999999999999999864 466899999999999999999997654 348899999
Q ss_pred CCcEEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEecCCc---cccccceeEEEeccCcc
Q 002847 168 KGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPE---RRREKNKIWLVDLGGSE 244 (874)
Q Consensus 168 ~ggv~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~d~~e---~~~~~SkL~LVDLAGSE 244 (874)
.+++++.|++++.|.|++|++++|..|.++|++++|.+|..|||||+||+|+|.+.+... .....|+|+||||||||
T Consensus 152 ~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~l~~vDLAGsE 231 (321)
T cd01374 152 NKGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTVRVSTLNLIDLAGSE 231 (321)
T ss_pred CCCEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCCC
Confidence 999999999999999999999999999999999999999999999999999999876543 45677999999999999
Q ss_pred ccccccccchhhHHHHHhhhhHHHHHHHHHHHhcCC--CCccCCCCccccccccccCCCceeeEEEecCCCCCCHHHHHH
Q 002847 245 RVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRK--RHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETIC 322 (874)
Q Consensus 245 R~~kt~a~G~rlkEg~~INkSLsALg~VI~ALs~k~--~hIPYRDSKLTrLLqDSLGGNSKT~mIa~ISPs~~~~eETLs 322 (874)
|..+.+ .+.+++|+.+||+||.+|++||.+|++++ .|||||+||||+||+++|||||+|+||+||||...+++||++
T Consensus 232 ~~~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~ 310 (321)
T cd01374 232 RASQTG-AGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEETLN 310 (321)
T ss_pred ccccCC-CCccccccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHH
Confidence 999888 89999999999999999999999999985 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcc
Q 002847 323 SLNFATRVKSV 333 (874)
Q Consensus 323 TLrFAsRAK~I 333 (874)
||+||+|+++|
T Consensus 311 TL~~a~r~~~i 321 (321)
T cd01374 311 TLKFASRAKKV 321 (321)
T ss_pred HHHHHHHHhcC
Confidence 99999999986
No 18
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=2.3e-73 Score=616.75 Aligned_cols=323 Identities=51% Similarity=0.824 Sum_probs=295.5
Q ss_pred CCCEEEEEEeCCCCCCcCCCCCCcEEEeCCCc-eEEEecC--CCCceeEeceeeCCCCChHHHHHhhHHHHHHhhcCCCe
Q 002847 8 AGNIRVFCRIRPISMGENFGRLRPVIAKDSSN-VLLKLAD--NKSKNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNA 84 (874)
Q Consensus 8 kgnIrV~VRIRPl~~~E~~~~~~~vI~~d~~~-v~l~~~~--~~~k~F~FD~VF~~~asQeeVF~~V~PlV~svLdGyN~ 84 (874)
+|+|+|+||+||+...|. .....++.+++.. ..+.+.. ...+.|.||+||+++++|++||+.++|+|+++++|+|+
T Consensus 1 ~~~i~V~vRirP~~~~e~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~v~p~v~~~~~G~~~ 79 (329)
T cd01366 1 KGNIRVFCRVRPLLPSES-TEYSSVISFPDEDGGTIELSKGTGKKKSFSFDRVFDPDASQEDVFEEVSPLVQSALDGYNV 79 (329)
T ss_pred CCCEEEEEEcCcCCcccc-CCCccEEEEcCCCceEEEEeCCCCCceEEecCEEECCCCCHHHHHHHHHHHHHHHhCCCce
Confidence 699999999999998875 2334456666552 3333333 56789999999999999999999999999999999999
Q ss_pred eEEEeccCCCCcceeccCCCCCCCcHHHHHHHHHHHHHhc---CCeeEEEEEEEEEecceeecccCCCCCCCCCCCCCcc
Q 002847 85 CIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAMES---NHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCL 161 (874)
Q Consensus 85 TIfAYGQTGSGKTyTM~Gs~e~~GIIPRaledLF~~i~e~---~~~f~VsVS~lEIYNEkV~DLL~~~~~~~~~~~~~~L 161 (874)
||||||+|||||||||+|+..++||+||++++||+.+... ...|.|++||+|||||+|+|||++... ..+.+
T Consensus 80 ~i~ayG~tgSGKT~tl~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~-----~~~~l 154 (329)
T cd01366 80 CIFAYGQTGSGKTYTMEGPPENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPA-----PKKKL 154 (329)
T ss_pred EEEEeCCCCCCCcEEecCCCCCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcC-----CCCce
Confidence 9999999999999999999999999999999999988653 568999999999999999999987541 23458
Q ss_pred eeeecCCCcEEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEecCCccccccceeEEEecc
Q 002847 162 SIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPERRREKNKIWLVDLG 241 (874)
Q Consensus 162 ~I~ed~~ggv~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~d~~e~~~~~SkL~LVDLA 241 (874)
.+++++.+++++.|++++.|.|++|+.+++..|.++|.++.|.+|..|||||+||+|+|.+.+........|+|+|||||
T Consensus 155 ~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~s~l~~VDLa 234 (329)
T cd01366 155 EIKHDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQTGEQTRGKLNLVDLA 234 (329)
T ss_pred EEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCCCCcEEEEEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999988876777789999999999
Q ss_pred CccccccccccchhhHHHHHhhhhHHHHHHHHHHHhcCCCCccCCCCccccccccccCCCceeeEEEecCCCCCCHHHHH
Q 002847 242 GSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETI 321 (874)
Q Consensus 242 GSER~~kt~a~G~rlkEg~~INkSLsALg~VI~ALs~k~~hIPYRDSKLTrLLqDSLGGNSKT~mIa~ISPs~~~~eETL 321 (874)
|+|+..+.++.+.+++|+..||+||.+|++||.+|+.+..|||||+||||+||+++|||+++|+||+||||...+++||+
T Consensus 235 GsE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~etl 314 (329)
T cd01366 235 GSERLKKSGATGDRLKEAQAINKSLSALGDVISALRSKDSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLSETL 314 (329)
T ss_pred CCcccccccccchhhHhHhhhhhHHHHHHHHHHHHhcCCCcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccC
Q 002847 322 CSLNFATRVKSVHLG 336 (874)
Q Consensus 322 sTLrFAsRAK~Ik~~ 336 (874)
+||+||+|+++|+++
T Consensus 315 ~tL~~a~~~~~i~~~ 329 (329)
T cd01366 315 CSLRFASRVRSVELG 329 (329)
T ss_pred HHHHHHHHhhcccCC
Confidence 999999999999753
No 19
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=2.9e-73 Score=618.61 Aligned_cols=318 Identities=39% Similarity=0.625 Sum_probs=286.1
Q ss_pred CEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEEEecCCCCceeEeceeeCCCCChHHHHHh-hHHHHHHhhcCCCeeEEE
Q 002847 10 NIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADNKSKNYSFDKVFHPGSSQDEVFSE-VEPVIKSVLDGYNACIFA 88 (874)
Q Consensus 10 nIrV~VRIRPl~~~E~~~~~~~vI~~d~~~v~l~~~~~~~k~F~FD~VF~~~asQeeVF~~-V~PlV~svLdGyN~TIfA 88 (874)
+|+|+||+||+...|.......++.+.+....+... ..+.|.||+||+++++|++||+. ++|+|+++++|||+||||
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~--~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~a 79 (341)
T cd01372 2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVG--TDKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNATVLA 79 (341)
T ss_pred CeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEec--CCcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCccceee
Confidence 699999999999888655554555554443333222 26789999999999999999998 689999999999999999
Q ss_pred eccCCCCcceeccCCC------CCCCcHHHHHHHHHHHHHhcC--CeeEEEEEEEEEecceeecccCCCCCCCCCCCCCc
Q 002847 89 YGQTGTGKSFTMEGTP------DSPGIVPRAIEAIFKQAMESN--HAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPC 160 (874)
Q Consensus 89 YGQTGSGKTyTM~Gs~------e~~GIIPRaledLF~~i~e~~--~~f~VsVS~lEIYNEkV~DLL~~~~~~~~~~~~~~ 160 (874)
||||||||||||+|+. +++|||||++++||+.+.... ..|.|++||+|||||+|+|||.+... ..+.
T Consensus 80 yG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~-----~~~~ 154 (341)
T cd01372 80 YGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPSTS-----EKSP 154 (341)
T ss_pred ecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCccc-----CCCC
Confidence 9999999999999974 579999999999999987543 58999999999999999999986541 1245
Q ss_pred ceeeecCCCcEEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEecCC----------cccc
Q 002847 161 LSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAP----------ERRR 230 (874)
Q Consensus 161 L~I~ed~~ggv~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~d~~----------e~~~ 230 (874)
+.+++++.++++|.|++++.|.+++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+.+.. ....
T Consensus 155 l~i~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~~~ 234 (341)
T cd01372 155 IQIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNST 234 (341)
T ss_pred ceEEECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccccccCCCce
Confidence 899999999999999999999999999999999999999999999999999999999999987652 3345
Q ss_pred ccceeEEEeccCccccccccccchhhHHHHHhhhhHHHHHHHHHHHhcCC---CCccCCCCccccccccccCCCceeeEE
Q 002847 231 EKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRK---RHVPYRNSKLTQVLKDSLGEDSKTLML 307 (874)
Q Consensus 231 ~~SkL~LVDLAGSER~~kt~a~G~rlkEg~~INkSLsALg~VI~ALs~k~---~hIPYRDSKLTrLLqDSLGGNSKT~mI 307 (874)
..|+|+||||||||+..++++.+.+++|+..||+||.+|++||.+|+.++ .|||||+||||+||+|+||||++|+||
T Consensus 235 ~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg~s~t~~I 314 (341)
T cd01372 235 LTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSLGGNSHTLMI 314 (341)
T ss_pred eeEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhcCCCceEEEE
Confidence 78999999999999999999999999999999999999999999999876 799999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHhhccc
Q 002847 308 VHVSPKEDDLCETICSLNFATRVKSVH 334 (874)
Q Consensus 308 a~ISPs~~~~eETLsTLrFAsRAK~Ik 334 (874)
+||||+..+++||++||+||+|||+|+
T Consensus 315 ~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 315 ACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred EEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 999999999999999999999999985
No 20
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=5.1e-74 Score=654.76 Aligned_cols=323 Identities=38% Similarity=0.605 Sum_probs=296.5
Q ss_pred CCCEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEEEec--------CCCCceeEeceeeCCC-------CChHHHHHhh-
Q 002847 8 AGNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLA--------DNKSKNYSFDKVFHPG-------SSQDEVFSEV- 71 (874)
Q Consensus 8 kgnIrV~VRIRPl~~~E~~~~~~~vI~~d~~~v~l~~~--------~~~~k~F~FD~VF~~~-------asQeeVF~~V- 71 (874)
..+|+|+|||||++.+|......+++.++.++.++... .++.++|.||++|++. ++|+.||..+
T Consensus 3 ~~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG 82 (1714)
T KOG0241|consen 3 DAKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLG 82 (1714)
T ss_pred CcceEEEEEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhcc
Confidence 56899999999999999888888999999998887643 2457999999999865 6899999998
Q ss_pred HHHHHHhhcCCCeeEEEeccCCCCcceeccCCCCCCCcHHHHHHHHHHHHHh---cCCeeEEEEEEEEEecceeecccCC
Q 002847 72 EPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAME---SNHAFRISFSMLEIYLGSLKDLLVT 148 (874)
Q Consensus 72 ~PlV~svLdGyN~TIfAYGQTGSGKTyTM~Gs~e~~GIIPRaledLF~~i~e---~~~~f~VsVS~lEIYNEkV~DLL~~ 148 (874)
.-+|+.+|+|||+||||||||||||||||+|..++||||||+++.||.++.. .+..|.|.|||+|||||++||||.|
T Consensus 83 ~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DLLdP 162 (1714)
T KOG0241|consen 83 EGILENAFQGYNACIFAYGQTGSGKSYSMMGTAEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDLLDP 162 (1714)
T ss_pred hHHHHHHhhccceeeEEecccCCCceeEeeccCCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhhhCC
Confidence 4589999999999999999999999999999999999999999999999854 4568999999999999999999988
Q ss_pred CCCCCCCCCCCcceeeecCCCcEEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEe--cCC
Q 002847 149 QPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCF--DAP 226 (874)
Q Consensus 149 ~~~~~~~~~~~~L~I~ed~~ggv~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~--d~~ 226 (874)
+... ..++++++.--|++|.||++..|+|++++-.++..|+++|++++|+||..|||||++|.|.|++. |..
T Consensus 163 k~ss------qtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~k 236 (1714)
T KOG0241|consen 163 KGSS------QTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLK 236 (1714)
T ss_pred CCCc------ceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEeccc
Confidence 7653 56999999999999999999999999999999999999999999999999999999999999874 222
Q ss_pred --ccccccceeEEEeccCccccccccccchhhHHHHHhhhhHHHHHHHHHHHhc------CCCCccCCCCcccccccccc
Q 002847 227 --ERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQR------RKRHVPYRNSKLTQVLKDSL 298 (874)
Q Consensus 227 --e~~~~~SkL~LVDLAGSER~~kt~a~G~rlkEg~~INkSLsALg~VI~ALs~------k~~hIPYRDSKLTrLLqDSL 298 (874)
......|+|.|||||||||+.++++.|.|++|+.+||+||.+||.||+||+. +.++||||||.||+||||+|
T Consensus 237 tg~SgeKvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~L 316 (1714)
T KOG0241|consen 237 TGHSGEKVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNL 316 (1714)
T ss_pred cCcchhheeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhc
Confidence 2334679999999999999999999999999999999999999999999975 24699999999999999999
Q ss_pred CCCceeeEEEecCCCCCCHHHHHHHHHHHHHhhccccC
Q 002847 299 GEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHLG 336 (874)
Q Consensus 299 GGNSKT~mIa~ISPs~~~~eETLsTLrFAsRAK~Ik~~ 336 (874)
||||+|+||+||||+.++|+||++||+||.|||.|++.
T Consensus 317 GGNsrTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~ 354 (1714)
T KOG0241|consen 317 GGNSRTVMIATVSPAADNYEETLSTLRYADRAKRIVNH 354 (1714)
T ss_pred CCCceeEEEEEecccccchHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999853
No 21
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=9.2e-72 Score=607.16 Aligned_cols=316 Identities=41% Similarity=0.628 Sum_probs=277.7
Q ss_pred CEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEEEe----------cCCCCceeEeceeeCCCCChHHHHHh-hHHHHHHh
Q 002847 10 NIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKL----------ADNKSKNYSFDKVFHPGSSQDEVFSE-VEPVIKSV 78 (874)
Q Consensus 10 nIrV~VRIRPl~~~E~~~~~~~vI~~d~~~v~l~~----------~~~~~k~F~FD~VF~~~asQeeVF~~-V~PlV~sv 78 (874)
.|+|+||+||+...+... ..+..+...+.+.. .....+.|.||+||++ ++|++||+. +.|+|+++
T Consensus 1 ~i~V~vRvRP~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~~ 76 (334)
T cd01375 1 TIQVFVRVRPTPTKQGSS---IKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVDSA 76 (334)
T ss_pred CeEEEEECCCCCCCCCcc---EEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHHHH
Confidence 489999999998855321 11222222222221 1123567999999999 999999998 58999999
Q ss_pred hcCCCeeEEEeccCCCCcceeccCCC---CCCCcHHHHHHHHHHHHHhc-CCeeEEEEEEEEEecceeecccCCCCCCCC
Q 002847 79 LDGYNACIFAYGQTGTGKSFTMEGTP---DSPGIVPRAIEAIFKQAMES-NHAFRISFSMLEIYLGSLKDLLVTQPTKAT 154 (874)
Q Consensus 79 LdGyN~TIfAYGQTGSGKTyTM~Gs~---e~~GIIPRaledLF~~i~e~-~~~f~VsVS~lEIYNEkV~DLL~~~~~~~~ 154 (874)
++|+|+||||||||||||||||+|+. .++|||||++++||+++... +..|.|++||+|||||+|+|||++....
T Consensus 77 ~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~-- 154 (334)
T cd01375 77 LDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMRATKTYTVHVSYLEIYNEQLYDLLGDTPEA-- 154 (334)
T ss_pred hCCCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhccCcceEEEEEEEEEECCEeecCCCCCccc--
Confidence 99999999999999999999999976 47899999999999998654 5689999999999999999999876432
Q ss_pred CCCCCcceeeecCCCcEEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEe--cCCcccccc
Q 002847 155 DPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCF--DAPERRREK 232 (874)
Q Consensus 155 ~~~~~~L~I~ed~~ggv~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~--d~~e~~~~~ 232 (874)
....+.+.+++++.++++|+|++++.|.+++|++.++..|.++|.+++|.+|..|||||+||+|+|.+. .........
T Consensus 155 ~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~~~~~~~~ 234 (334)
T cd01375 155 LESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREAGSEVVRL 234 (334)
T ss_pred cccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCCCCCceEE
Confidence 122356899999999999999999999999999999999999999999999999999999999999986 334445567
Q ss_pred ceeEEEeccCccccccccccchhhHHHHHhhhhHHHHHHHHHHHhcCC-CCccCCCCccccccccccCCCceeeEEEecC
Q 002847 233 NKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRK-RHVPYRNSKLTQVLKDSLGEDSKTLMLVHVS 311 (874)
Q Consensus 233 SkL~LVDLAGSER~~kt~a~G~rlkEg~~INkSLsALg~VI~ALs~k~-~hIPYRDSKLTrLLqDSLGGNSKT~mIa~IS 311 (874)
|+|+|||||||||..++++.+..++|+..||+||++|++||.+|++++ .||||||||||+||+|+|||||+|+||+|||
T Consensus 235 s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~vs 314 (334)
T cd01375 235 SKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLATIW 314 (334)
T ss_pred EEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeC
Confidence 999999999999999999999999999999999999999999999988 9999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhh
Q 002847 312 PKEDDLCETICSLNFATRVK 331 (874)
Q Consensus 312 Ps~~~~eETLsTLrFAsRAK 331 (874)
|+..+++||++||+||+|++
T Consensus 315 p~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 315 VEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred CchhhHHHHHHHHHHHHhcC
Confidence 99999999999999999985
No 22
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=5.2e-69 Score=580.55 Aligned_cols=315 Identities=46% Similarity=0.732 Sum_probs=286.7
Q ss_pred CEEEEEEeCCCCCCcCCCCCCcEEEeCC-CceEEEecC----CCCceeEeceeeCCCCChHHHHHh-hHHHHHHhhcCCC
Q 002847 10 NIRVFCRIRPISMGENFGRLRPVIAKDS-SNVLLKLAD----NKSKNYSFDKVFHPGSSQDEVFSE-VEPVIKSVLDGYN 83 (874)
Q Consensus 10 nIrV~VRIRPl~~~E~~~~~~~vI~~d~-~~v~l~~~~----~~~k~F~FD~VF~~~asQeeVF~~-V~PlV~svLdGyN 83 (874)
+|+|+||+||+...|.. ....++.+++ ..+.+.... ...+.|.||+||+++++|++||+. ++|+|+++++|+|
T Consensus 1 ~i~V~vRvrP~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~~ 79 (328)
T cd00106 1 NIRVVVRIRPLNGRESK-SEESCITVDDNKTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYN 79 (328)
T ss_pred CeEEEEEcCCCCccccc-CCCcEEEECCCCEEEEecCccccCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCCc
Confidence 69999999999987632 3344667777 455443322 346899999999999999999998 5899999999999
Q ss_pred eeEEEeccCCCCcceeccCCCCCCCcHHHHHHHHHHHHHhc---CCeeEEEEEEEEEecceeecccCCCCCCCCCCCCCc
Q 002847 84 ACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAMES---NHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPC 160 (874)
Q Consensus 84 ~TIfAYGQTGSGKTyTM~Gs~e~~GIIPRaledLF~~i~e~---~~~f~VsVS~lEIYNEkV~DLL~~~~~~~~~~~~~~ 160 (874)
+||||||+|||||||||+|+.+++|||||++++||+.+... ...+.|++||+|||+|+|+|||++.. ....
T Consensus 80 ~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~------~~~~ 153 (328)
T cd00106 80 GTIFAYGQTGSGKTYTMFGSPKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEP------PSKP 153 (328)
T ss_pred eeEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCC------CCCC
Confidence 99999999999999999999999999999999999998765 47899999999999999999998752 1245
Q ss_pred ceeeecCCCcEEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEecCCccc--cccceeEEE
Q 002847 161 LSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPERR--REKNKIWLV 238 (874)
Q Consensus 161 L~I~ed~~ggv~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~d~~e~~--~~~SkL~LV 238 (874)
+.+++++.+++.+.|++++.|.|++|++++|..|.++|.++.|..|..|||||+||+|+|.+.+..... ...|+|+||
T Consensus 154 l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~s~l~~V 233 (328)
T cd00106 154 LSLREDPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDGRSIKSSKLNLV 233 (328)
T ss_pred cEEEEcCCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCCccEEEEEEEEE
Confidence 889999999999999999999999999999999999999999999999999999999999988765443 678999999
Q ss_pred eccCccccccccccchhhHHHHHhhhhHHHHHHHHHHHhcCC--CCccCCCCccccccccccCCCceeeEEEecCCCCCC
Q 002847 239 DLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRK--RHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDD 316 (874)
Q Consensus 239 DLAGSER~~kt~a~G~rlkEg~~INkSLsALg~VI~ALs~k~--~hIPYRDSKLTrLLqDSLGGNSKT~mIa~ISPs~~~ 316 (874)
||||+|+..+.+..+.+++|+..||+||.+|++||.+|+.+. .|||||+||||+||+|+|||+++|+||+||+|...+
T Consensus 234 DLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~ 313 (328)
T cd00106 234 DLAGSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSEN 313 (328)
T ss_pred ECCCCCcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhh
Confidence 999999999999999999999999999999999999999988 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 002847 317 LCETICSLNFATRVK 331 (874)
Q Consensus 317 ~eETLsTLrFAsRAK 331 (874)
++||++||+||+|||
T Consensus 314 ~~eTl~tL~~a~r~~ 328 (328)
T cd00106 314 YDETLSTLRFASRAK 328 (328)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999986
No 23
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=5.6e-69 Score=582.85 Aligned_cols=321 Identities=44% Similarity=0.715 Sum_probs=292.2
Q ss_pred CEEEEEEeCCCCCCcCCCCCCcEEEeCCC---ceEEEec--CCCCceeEeceeeCCCCChHHHHHh-hHHHHHHhhcCCC
Q 002847 10 NIRVFCRIRPISMGENFGRLRPVIAKDSS---NVLLKLA--DNKSKNYSFDKVFHPGSSQDEVFSE-VEPVIKSVLDGYN 83 (874)
Q Consensus 10 nIrV~VRIRPl~~~E~~~~~~~vI~~d~~---~v~l~~~--~~~~k~F~FD~VF~~~asQeeVF~~-V~PlV~svLdGyN 83 (874)
+|+|+|||||+...|......+++.+.+. .+.+... ....+.|.||+||+++++|++||+. +.|+|+++++|+|
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G~~ 80 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPKNRKEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEGYN 80 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCCCCCCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcCCc
Confidence 69999999999998876555666666554 3333221 2356889999999999999999998 6899999999999
Q ss_pred eeEEEeccCCCCcceeccCCCCCCCcHHHHHHHHHHHHHhc--CCeeEEEEEEEEEecceeecccCCCCCCCCCCCCCcc
Q 002847 84 ACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAMES--NHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCL 161 (874)
Q Consensus 84 ~TIfAYGQTGSGKTyTM~Gs~e~~GIIPRaledLF~~i~e~--~~~f~VsVS~lEIYNEkV~DLL~~~~~~~~~~~~~~L 161 (874)
+||||||+|||||||||+|+.+++||+||++++||+.+... ...|.|++||+|||+|+|+|||++.. +.+
T Consensus 81 ~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~--------~~l 152 (335)
T smart00129 81 ATIFAYGQTGSGKTYTMSGTPDSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPSP--------KKL 152 (335)
T ss_pred eeEEEeCCCCCCCceEecCCCCCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCCC--------CCc
Confidence 99999999999999999999999999999999999988654 46899999999999999999997642 348
Q ss_pred eeeecCCCcEEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEe--cCCccccccceeEEEe
Q 002847 162 SIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCF--DAPERRREKNKIWLVD 239 (874)
Q Consensus 162 ~I~ed~~ggv~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~--d~~e~~~~~SkL~LVD 239 (874)
.+++++.+++++.|++++.|.|++|+++++..|..+|.+++|.+|..|||||+||+|+|.+. +........|+|+|||
T Consensus 153 ~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~~~~~~~~s~l~~VD 232 (335)
T smart00129 153 EIREDKKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKNSSSGSGKASKLNLVD 232 (335)
T ss_pred EEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecCCCCCCEEEEEEEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999966 4555667889999999
Q ss_pred ccCccccccccccchhhHHHHHhhhhHHHHHHHHHHHhc--CCCCccCCCCccccccccccCCCceeeEEEecCCCCCCH
Q 002847 240 LGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQR--RKRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDL 317 (874)
Q Consensus 240 LAGSER~~kt~a~G~rlkEg~~INkSLsALg~VI~ALs~--k~~hIPYRDSKLTrLLqDSLGGNSKT~mIa~ISPs~~~~ 317 (874)
|||+|+..+.++.+.+++|+..||+||.+|++||.+|+. +..|||||+|+||+||+++|||+++|+||+||||...++
T Consensus 233 LaGse~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~ 312 (335)
T smart00129 233 LAGSERASKTGAEGDRLKEAGNINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSNL 312 (335)
T ss_pred CCCCCccccccChhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccch
Confidence 999999999999999999999999999999999999998 678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCcC
Q 002847 318 CETICSLNFATRVKSVHLGHE 338 (874)
Q Consensus 318 eETLsTLrFAsRAK~Ik~~~~ 338 (874)
+||++||+||+++++|+..|.
T Consensus 313 ~eTl~tL~~a~~~~~i~~~p~ 333 (335)
T smart00129 313 EETLSTLRFASRAKEIKNKAI 333 (335)
T ss_pred HHHHHHHHHHHHHhhcccCCC
Confidence 999999999999999997663
No 24
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=5.1e-69 Score=582.12 Aligned_cols=314 Identities=42% Similarity=0.686 Sum_probs=275.2
Q ss_pred EeCCCCCCcCCCCCCcEEEeCCCc--eEEE----ecCCCCceeEeceeeCCCCChHHHHHh-hHHHHHHhhcCCCeeEEE
Q 002847 16 RIRPISMGENFGRLRPVIAKDSSN--VLLK----LADNKSKNYSFDKVFHPGSSQDEVFSE-VEPVIKSVLDGYNACIFA 88 (874)
Q Consensus 16 RIRPl~~~E~~~~~~~vI~~d~~~--v~l~----~~~~~~k~F~FD~VF~~~asQeeVF~~-V~PlV~svLdGyN~TIfA 88 (874)
||||++..|........+...... .... ......+.|.||+||+++++|++||+. +.|+|+++++|+|+||||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~a 80 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFA 80 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEe
Confidence 999999888654443333332111 1111 123346889999999999999999998 699999999999999999
Q ss_pred eccCCCCcceeccCC--CCCCCcHHHHHHHHHHHHHhcC----CeeEEEEEEEEEecceeecccCCCCCCCCCCCCCcce
Q 002847 89 YGQTGTGKSFTMEGT--PDSPGIVPRAIEAIFKQAMESN----HAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLS 162 (874)
Q Consensus 89 YGQTGSGKTyTM~Gs--~e~~GIIPRaledLF~~i~e~~----~~f~VsVS~lEIYNEkV~DLL~~~~~~~~~~~~~~L~ 162 (874)
||+|||||||||+|+ ..++||+||++++||+.+.... ..|.|+|||+|||+|+|+|||++... .....+.
T Consensus 81 yG~tgSGKT~Tm~G~~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~----~~~~~l~ 156 (335)
T PF00225_consen 81 YGQTGSGKTYTMFGSNDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNS----KSRKPLK 156 (335)
T ss_dssp EESTTSSHHHHHTBSTSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSS----STTSEBE
T ss_pred eccccccccccccccccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCcccc----ccccccc
Confidence 999999999999999 8899999999999999987643 47999999999999999999987641 1123589
Q ss_pred eeecCCCc-EEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEecCCccc----cccceeEE
Q 002847 163 IHTEPKGG-IEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPERR----REKNKIWL 237 (874)
Q Consensus 163 I~ed~~gg-v~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~d~~e~~----~~~SkL~L 237 (874)
+++++..| ++|.|++++.|.++++++++|..|.++|.++.|.+|..|||||+||+|+|.+.+..... ...|+|+|
T Consensus 157 i~~~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l~~ 236 (335)
T PF00225_consen 157 IREDSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRLTF 236 (335)
T ss_dssp EEEETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEEEE
T ss_pred eeeccccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccceeecceee
Confidence 99999976 99999999999999999999999999999999999999999999999999988765443 47899999
Q ss_pred EeccCccccccccc-cchhhHHHHHhhhhHHHHHHHHHHHhcC--CCCccCCCCccccccccccCCCceeeEEEecCCCC
Q 002847 238 VDLGGSERVLKTKA-RGRRLDEGKAINLSLSALGDVIYALQRR--KRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKE 314 (874)
Q Consensus 238 VDLAGSER~~kt~a-~G~rlkEg~~INkSLsALg~VI~ALs~k--~~hIPYRDSKLTrLLqDSLGGNSKT~mIa~ISPs~ 314 (874)
|||||+|+..+..+ .+.+++|+..||+||.+|++||.+|+.+ ..|||||+||||+||+|+|||||+|+||+||+|..
T Consensus 237 vDLaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~ 316 (335)
T PF00225_consen 237 VDLAGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSS 316 (335)
T ss_dssp EEEEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBG
T ss_pred eecccccccccccccccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceecccccccccceeEEEcCCcc
Confidence 99999999998886 4788999999999999999999999998 99999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhcc
Q 002847 315 DDLCETICSLNFATRVKSV 333 (874)
Q Consensus 315 ~~~eETLsTLrFAsRAK~I 333 (874)
.+++||++||+||+++|+|
T Consensus 317 ~~~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 317 EDYEETLSTLRFASRAREI 335 (335)
T ss_dssp GGHHHHHHHHHHHHHHTTE
T ss_pred ccHHHHHHHHHHHHHHcCC
Confidence 9999999999999999987
No 25
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=9e-66 Score=572.75 Aligned_cols=316 Identities=33% Similarity=0.481 Sum_probs=284.2
Q ss_pred CCEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEEEecCC---------CCceeEeceeeCCCCChHHHHHh-hHHHHHHh
Q 002847 9 GNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADN---------KSKNYSFDKVFHPGSSQDEVFSE-VEPVIKSV 78 (874)
Q Consensus 9 gnIrV~VRIRPl~~~E~~~~~~~vI~~d~~~v~l~~~~~---------~~k~F~FD~VF~~~asQeeVF~~-V~PlV~sv 78 (874)
..|.|+||-||++..|.......+|.+.+.++++..... ..+.|.||++|++.++++.||.. ++|+|..+
T Consensus 208 hrI~VCVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~PlV~~I 287 (676)
T KOG0246|consen 208 HRICVCVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRFTAKPLVKTI 287 (676)
T ss_pred ceEEEEeecCCCCchhccccccceEeccccceEEeeccccccchHHHHhhceEEEeeecccccchHHHHHHhhhHHHHHH
Confidence 479999999999999987777778888777766543311 23679999999999999999997 79999999
Q ss_pred hcCCCeeEEEeccCCCCcceeccCCC------CCCCcHHHHHHHHHHHHHhc---CCeeEEEEEEEEEecceeecccCCC
Q 002847 79 LDGYNACIFAYGQTGTGKSFTMEGTP------DSPGIVPRAIEAIFKQAMES---NHAFRISFSMLEIYLGSLKDLLVTQ 149 (874)
Q Consensus 79 LdGyN~TIfAYGQTGSGKTyTM~Gs~------e~~GIIPRaledLF~~i~e~---~~~f~VsVS~lEIYNEkV~DLL~~~ 149 (874)
|+|--+|+||||||||||||||.|+. ...||..++.+++|..+... ...+.|++||||||+++|||||+..
T Consensus 288 F~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL~~k 367 (676)
T KOG0246|consen 288 FEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLLNDK 367 (676)
T ss_pred HhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhhccc
Confidence 99999999999999999999999974 34699999999999988764 3479999999999999999999763
Q ss_pred CCCCCCCCCCcceeeecCCCcEEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEecCCccc
Q 002847 150 PTKATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPERR 229 (874)
Q Consensus 150 ~~~~~~~~~~~L~I~ed~~ggv~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~d~~e~~ 229 (874)
+.+.+.+|.++.|.|.||++..|.+.++++.++..|+..|+++.|..|..|||||+||+|.+.... ..
T Consensus 368 ---------~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~~---~~ 435 (676)
T KOG0246|consen 368 ---------KKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKHG---EF 435 (676)
T ss_pred ---------cceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecCC---cc
Confidence 348999999999999999999999999999999999999999999999999999999999996532 24
Q ss_pred cccceeEEEeccCcccccccc-ccchhhHHHHHhhhhHHHHHHHHHHHhcCCCCccCCCCccccccccccCC-CceeeEE
Q 002847 230 REKNKIWLVDLGGSERVLKTK-ARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVLKDSLGE-DSKTLML 307 (874)
Q Consensus 230 ~~~SkL~LVDLAGSER~~kt~-a~G~rlkEg~~INkSLsALg~VI~ALs~k~~hIPYRDSKLTrLLqDSLGG-NSKT~mI 307 (874)
..+|++.||||||+||...+. +..+...||+.|||||+||..||.||.+++.|+|||.||||++|+|||=| |++|+||
T Consensus 436 k~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk~H~PFR~SKLTqVLRDSFIGenSrTcMI 515 (676)
T KOG0246|consen 436 KLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKSHLPFRGSKLTQVLRDSFIGENSRTCMI 515 (676)
T ss_pred eeEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhHHHHHHHhhcCCCCceEEE
Confidence 678999999999999987665 45566679999999999999999999999999999999999999999987 9999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHhhccccC
Q 002847 308 VHVSPKEDDLCETICSLNFATRVKSVHLG 336 (874)
Q Consensus 308 a~ISPs~~~~eETLsTLrFAsRAK~Ik~~ 336 (874)
+||||...+.+.||+||+||.|+|.....
T Consensus 516 A~ISPg~~ScEhTLNTLRYAdRVKeLsv~ 544 (676)
T KOG0246|consen 516 ATISPGISSCEHTLNTLRYADRVKELSVD 544 (676)
T ss_pred EEeCCCcchhhhhHHHHHHHHHHHhhcCC
Confidence 99999999999999999999999988643
No 26
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=7.5e-64 Score=569.80 Aligned_cols=327 Identities=34% Similarity=0.572 Sum_probs=284.6
Q ss_pred cCCCCEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEEEe-----------cCCCCceeEeceeeCCCCChHHHHHh-hHH
Q 002847 6 AIAGNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKL-----------ADNKSKNYSFDKVFHPGSSQDEVFSE-VEP 73 (874)
Q Consensus 6 ~~kgnIrV~VRIRPl~~~E~~~~~~~vI~~d~~~v~l~~-----------~~~~~k~F~FD~VF~~~asQeeVF~~-V~P 73 (874)
+++.-|.|+||+||+..... ...++...++.++++.. .+...+.|.|.+||+|+++|.+||+. +.|
T Consensus 28 ~~~d~v~v~~rvrP~~~~~~--~~g~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~~p 105 (809)
T KOG0247|consen 28 ESKDPVLVVCRVRPLSDASE--DEGCLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTTVAP 105 (809)
T ss_pred hhhcchheeEeecCCCCCcc--ccceEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHHhHH
Confidence 45678899999999884221 22234455556665542 12235789999999999999999998 699
Q ss_pred HHHHhhcCCCeeEEEeccCCCCcceeccCCCCCCCcHHHHHHHHHHHHH-------------------------------
Q 002847 74 VIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAM------------------------------- 122 (874)
Q Consensus 74 lV~svLdGyN~TIfAYGQTGSGKTyTM~Gs~e~~GIIPRaledLF~~i~------------------------------- 122 (874)
+|.+++.|.|..+|+||.|||||||||+|++..+||+||+++-||..+.
T Consensus 106 lV~dlLkgqn~LlFTyGVTgSGKTYTm~G~~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~lkr 185 (809)
T KOG0247|consen 106 LVKDLLKGQNSLLFTYGVTGSGKTYTMTGTPDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQLKR 185 (809)
T ss_pred HHHHHHcccceeEEEeeccCCCceEEeecCCCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999999999999999994110
Q ss_pred -----------------------------------hcCCeeEEEEEEEEEecceeecccCCCCCCCCCCCCCcceeeecC
Q 002847 123 -----------------------------------ESNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEP 167 (874)
Q Consensus 123 -----------------------------------e~~~~f~VsVS~lEIYNEkV~DLL~~~~~~~~~~~~~~L~I~ed~ 167 (874)
..+..|.|+|||+|||||-|||||.+.+... .......+++|.
T Consensus 186 ~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~--~~~~~~ll~~d~ 263 (809)
T KOG0247|consen 186 EAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQG--KLQKLKLLREDT 263 (809)
T ss_pred hhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccc--hhhhhhhhhhcc
Confidence 0123589999999999999999998765432 222336678999
Q ss_pred CCcEEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEecCC--ccccccceeEEEeccCccc
Q 002847 168 KGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAP--ERRREKNKIWLVDLGGSER 245 (874)
Q Consensus 168 ~ggv~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~d~~--e~~~~~SkL~LVDLAGSER 245 (874)
++..+|.|+++|.|.+.+||+++|+.|.++|+.++|..|..|||||+||+|.|.+.... ......|.|.|||||||||
T Consensus 264 ~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~~s~~i~vSqlsLvDLAGSER 343 (809)
T KOG0247|consen 264 NGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQDSNQITVSQLSLVDLAGSER 343 (809)
T ss_pred CCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecccccccCceeEEeeeeeecccchh
Confidence 99999999999999999999999999999999999999999999999999999876654 4556789999999999999
Q ss_pred cccccccchhhHHHHHhhhhHHHHHHHHHHHhcC-----CCCccCCCCccccccccccCCCceeeEEEecCCCCCCHHHH
Q 002847 246 VLKTKARGRRLDEGKAINLSLSALGDVIYALQRR-----KRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCET 320 (874)
Q Consensus 246 ~~kt~a~G~rlkEg~~INkSLsALg~VI~ALs~k-----~~hIPYRDSKLTrLLqDSLGGNSKT~mIa~ISPs~~~~eET 320 (874)
..++++.|.|++|+++||.||++||+||.+|+++ +.+|||||||||++++.+|.|..+++||+||+|..++|+|+
T Consensus 344 t~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~YdEn 423 (809)
T KOG0247|consen 344 TNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDYDEN 423 (809)
T ss_pred cccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhHHHH
Confidence 9999999999999999999999999999999763 47899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccC
Q 002847 321 ICSLNFATRVKSVHLG 336 (874)
Q Consensus 321 LsTLrFAsRAK~Ik~~ 336 (874)
++.|+||.-+..|.+.
T Consensus 424 l~vlkFaeiaq~v~v~ 439 (809)
T KOG0247|consen 424 LNVLKFAEIAQEVEVA 439 (809)
T ss_pred HHHHHHHHhccccccc
Confidence 9999999999998743
No 27
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2e-63 Score=579.58 Aligned_cols=355 Identities=37% Similarity=0.549 Sum_probs=302.1
Q ss_pred eCCCCCCcCCCCCCcEEEeCCCceEEEecCCCCceeEeceeeCCCCChHHHHHh-hHHHHHHhhcCCCeeEEEeccCCCC
Q 002847 17 IRPISMGENFGRLRPVIAKDSSNVLLKLADNKSKNYSFDKVFHPGSSQDEVFSE-VEPVIKSVLDGYNACIFAYGQTGTG 95 (874)
Q Consensus 17 IRPl~~~E~~~~~~~vI~~d~~~v~l~~~~~~~k~F~FD~VF~~~asQeeVF~~-V~PlV~svLdGyN~TIfAYGQTGSG 95 (874)
|||+...|...+++.++.+..++..+.. ++...|+||+||.....|.++|+. |+|+++.+++|||+|++||||||||
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~i--g~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlaygQtgsg 78 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAI--GKDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAYGQTGSG 78 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceee--cCCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeeecccCCC
Confidence 6999988866666555554443333222 356789999999999999999998 8999999999999999999999999
Q ss_pred cceeccCC----CCCCCcHHHHHHHHHHHHHhc-CCeeEEEEEEEEEecceeecccCCCCCCCCCCCCCcceeeecCCCc
Q 002847 96 KSFTMEGT----PDSPGIVPRAIEAIFKQAMES-NHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGG 170 (874)
Q Consensus 96 KTyTM~Gs----~e~~GIIPRaledLF~~i~e~-~~~f~VsVS~lEIYNEkV~DLL~~~~~~~~~~~~~~L~I~ed~~gg 170 (874)
|||||.+. .++.|+|||+++.||.++... ...|.|.|||+|||++.|+|||.+.... ..+.+++ ++|+
T Consensus 79 kTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~~~f~i~vs~vely~e~v~dl~~~~~~~------~~i~~~e-~~g~ 151 (913)
T KOG0244|consen 79 KTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTESFVFRITVSFVELYNEEVLDLLKPSRLK------ANIKLRE-PKGE 151 (913)
T ss_pred ceeecccccccccccCCcCcchHHHHHHHHHhhhccceeeeeeeeeccchhhhhhcChhhhh------hceeccc-cCCc
Confidence 99999987 334699999999999998643 3579999999999999999999743322 2367777 8899
Q ss_pred EEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEec-CCccccccceeEEEeccCccccccc
Q 002847 171 IEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFD-APERRREKNKIWLVDLGGSERVLKT 249 (874)
Q Consensus 171 v~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~d-~~e~~~~~SkL~LVDLAGSER~~kt 249 (874)
+.+.|+++..|.+..+++..|..|.-.|++++|+||..|||||+||++++++.. .......++||+|||||||||.++|
T Consensus 152 it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~~s~~~sKlhlVDLAGSER~kkT 231 (913)
T KOG0244|consen 152 ITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSKRSSFCSKLHLVDLAGSERVKKT 231 (913)
T ss_pred eEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhccchhhhhhheeecccccccccc
Confidence 999999999999999999999999999999999999999999999999997632 3334456799999999999999999
Q ss_pred cccchhhHHHHHhhhhHHHHHHHHHHHhcCCC--CccCCCCccccccccccCCCceeeEEEecCCCCCCHHHHHHHHHHH
Q 002847 250 KARGRRLDEGKAINLSLSALGDVIYALQRRKR--HVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFA 327 (874)
Q Consensus 250 ~a~G~rlkEg~~INkSLsALg~VI~ALs~k~~--hIPYRDSKLTrLLqDSLGGNSKT~mIa~ISPs~~~~eETLsTLrFA 327 (874)
++.|.|++||.+||.+|++||+||+||...+. |||||+|||||||||+||||+.|+||+||||+..+.+||++||+||
T Consensus 232 ~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnTl~ya 311 (913)
T KOG0244|consen 232 KAEGDRLKEGININGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNTLRYA 311 (913)
T ss_pred ccchhhhhhccCcchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHHHHHh
Confidence 99999999999999999999999999987665 9999999999999999999999999999999999999999999999
Q ss_pred HHhhccccCcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHc
Q 002847 328 TRVKSVHLGHEDSNEARDQKEVSMKNLQQKMKKIEEERLRVR-----GEIENLSEKLEALT 383 (874)
Q Consensus 328 sRAK~Ik~~~~~~~~~~~~k~~~~~~Lqqkik~LeeE~~~lr-----~EIe~Lk~~Le~l~ 383 (874)
.||+.|++.+..+. +.....+..++++++.|+.|+...+ .+|+.|..+...+.
T Consensus 312 ~Rak~iknk~vvN~---d~~~~~~~~lK~ql~~l~~ell~~~~~~~~~ei~sl~~e~~~l~ 369 (913)
T KOG0244|consen 312 DRAKQIKNKPVVNQ---DPKSFEMLKLKAQLEPLQVELLSKAGDELDAEINSLPFENVTLE 369 (913)
T ss_pred hHHHHhcccccccc---cHHHHHHHHHHHHHHHHHHHHHhhccccchhHHhhhhhhhhhhh
Confidence 99999998765544 5555667777778877777776554 45555555444443
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.8e-60 Score=547.69 Aligned_cols=316 Identities=40% Similarity=0.659 Sum_probs=282.0
Q ss_pred CCEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEEEecCCCCceeEeceeeCCCCChHHHHHh-hHHHHHHhhcCCCeeEE
Q 002847 9 GNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADNKSKNYSFDKVFHPGSSQDEVFSE-VEPVIKSVLDGYNACIF 87 (874)
Q Consensus 9 gnIrV~VRIRPl~~~E~~~~~~~vI~~d~~~v~l~~~~~~~k~F~FD~VF~~~asQeeVF~~-V~PlV~svLdGyN~TIf 87 (874)
.+++++++..|-..++. ........ .+.........|.||+||++.++|++||+. +.|++++++.|||+|||
T Consensus 22 ~~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~~~~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~Tvf 94 (568)
T COG5059 22 SDIKSTIRIIPGELGER------LINTSKKS-HVSLEKSKEGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVF 94 (568)
T ss_pred cCceEEEeecCCCcchh------eeeccccc-ccccccccceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccceEE
Confidence 56788888888655431 11111111 111111226789999999999999999998 79999999999999999
Q ss_pred EeccCCCCcceeccCCCCCCCcHHHHHHHHHHHHHhcC--CeeEEEEEEEEEecceeecccCCCCCCCCCCCCCcceeee
Q 002847 88 AYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAMESN--HAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHT 165 (874)
Q Consensus 88 AYGQTGSGKTyTM~Gs~e~~GIIPRaledLF~~i~e~~--~~f~VsVS~lEIYNEkV~DLL~~~~~~~~~~~~~~L~I~e 165 (874)
|||||||||||||.|..+++||||+++.+||+.+.... ..+.|.+||+|||||+++|||.+.... +.+++
T Consensus 95 ayGqTgsgKtyt~~G~~~~~Gii~~~l~~lf~~l~~~~~~~~~~v~is~lEiYnEk~~DLl~~~~~~--------~~~~~ 166 (568)
T COG5059 95 AYGQTGSGKTYTMSGTEEEPGIIPLSLKELFSKLEDLSMTKDFAVSISYLEIYNEKIYDLLSPNEES--------LNIRE 166 (568)
T ss_pred EEcccCCCceeEeecCccccchHHHHHHHHHHHHHhcccCcceeeEeehhHHHhhHHHhhccCcccc--------ccccc
Confidence 99999999999999999999999999999999987655 789999999999999999999876532 67889
Q ss_pred cCCCcEEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEecCCccccccceeEEEeccCccc
Q 002847 166 EPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPERRREKNKIWLVDLGGSER 245 (874)
Q Consensus 166 d~~ggv~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~d~~e~~~~~SkL~LVDLAGSER 245 (874)
+..+++.|.++++..+.+.+|++.+|..|..+|+++.|.+|..|||||++|++++.+.+........++|.||||||||+
T Consensus 167 ~~~~~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~~~~~~~~l~lvDLagSE~ 246 (568)
T COG5059 167 DSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGTSETSKLSLVDLAGSER 246 (568)
T ss_pred cCCCceEeecceEEecCChHHHHHHHHHhhhhcccccchhccccccceEEEEEEEEEeccCccceecceEEEEeeccccc
Confidence 99999999999999999999999999999999999999999999999999999999988776666668999999999999
Q ss_pred cccccccchhhHHHHHhhhhHHHHHHHHHHHhc--CCCCccCCCCccccccccccCCCceeeEEEecCCCCCCHHHHHHH
Q 002847 246 VLKTKARGRRLDEGKAINLSLSALGDVIYALQR--RKRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICS 323 (874)
Q Consensus 246 ~~kt~a~G~rlkEg~~INkSLsALg~VI~ALs~--k~~hIPYRDSKLTrLLqDSLGGNSKT~mIa~ISPs~~~~eETLsT 323 (874)
+..++..+.+++|+..||+||.+||+||.+|.. +..|||||+|||||+|+++|||+|+|+|||||+|...+++||++|
T Consensus 247 ~~~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~t 326 (568)
T COG5059 247 AARTGNRGTRLKEGASINKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINT 326 (568)
T ss_pred cchhhcccchhhhhhhhHhhHHHHHHHHHHHhccccCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHH
Confidence 999999999999999999999999999999997 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccccCcCC
Q 002847 324 LNFATRVKSVHLGHED 339 (874)
Q Consensus 324 LrFAsRAK~Ik~~~~~ 339 (874)
|+||.||++|+.....
T Consensus 327 L~~a~rak~I~~~~~~ 342 (568)
T COG5059 327 LKFASRAKSIKNKIQV 342 (568)
T ss_pred HHHHHHHhhcCCcccc
Confidence 9999999999865543
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=1.6e-49 Score=399.57 Aligned_cols=176 Identities=52% Similarity=0.799 Sum_probs=168.5
Q ss_pred HHHhhHHHHHHhhcCCCeeEEEeccCCCCcceeccCCCCCCCcHHHHHHHHHHHHHhcCCeeEEEEEEEEEecceeeccc
Q 002847 67 VFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAMESNHAFRISFSMLEIYLGSLKDLL 146 (874)
Q Consensus 67 VF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM~Gs~e~~GIIPRaledLF~~i~e~~~~f~VsVS~lEIYNEkV~DLL 146 (874)
||+.+.|+|+.+++|||+||||||||||||||||+|+++++||+||++++
T Consensus 8 vf~~~~~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~~Giip~~~~~------------------------------ 57 (186)
T cd01363 8 VFRDVGPLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAGIIPRTVTD------------------------------ 57 (186)
T ss_pred HHHHHHHHHHHHhCCcceeEEEECCCCCcceEecCCCCCCCCcchHHHHH------------------------------
Confidence 99996799999999999999999999999999999999999999999988
Q ss_pred CCCCCCCCCCCCCcceeeecCCCcEEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEecCC
Q 002847 147 VTQPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAP 226 (874)
Q Consensus 147 ~~~~~~~~~~~~~~L~I~ed~~ggv~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~d~~ 226 (874)
+++++..|.++|.++.|.+|..|||||+||+|++.+.+..
T Consensus 58 ----------------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~ 97 (186)
T cd01363 58 ----------------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNAL 97 (186)
T ss_pred ----------------------------------------HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecC
Confidence 7889999999999999999999999999999999887654
Q ss_pred c---cccccceeEEEeccCccccccccccchhhHHHHHhhhhHHHHHHHHHHHhcCCCCccCCCCccccccccccCCCce
Q 002847 227 E---RRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVLKDSLGEDSK 303 (874)
Q Consensus 227 e---~~~~~SkL~LVDLAGSER~~kt~a~G~rlkEg~~INkSLsALg~VI~ALs~k~~hIPYRDSKLTrLLqDSLGGNSK 303 (874)
. .....++|+||||||||+..+++..+.+++|++.||+||++|++||.+|++++.|||||+||||+||||+|||||+
T Consensus 98 ~~~~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~~~vpyr~SkLT~lL~~~L~g~~~ 177 (186)
T cd01363 98 ASATEQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAERDSHVPYRESKLTRLLQDSLGGNSR 177 (186)
T ss_pred CCCccceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHhcCCCCe
Confidence 3 4566899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEecCC
Q 002847 304 TLMLVHVSP 312 (874)
Q Consensus 304 T~mIa~ISP 312 (874)
|+||+||||
T Consensus 178 t~~i~~vsP 186 (186)
T cd01363 178 TLMVACISP 186 (186)
T ss_pred EEEEEEeCc
Confidence 999999998
No 30
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=97.99 E-value=6.5e-08 Score=113.92 Aligned_cols=247 Identities=28% Similarity=0.325 Sum_probs=150.1
Q ss_pred CEEEEEEeCCCCCCc--CC---------CCCCcEEEeCCCceEEEecCCCCceeEeceeeCCCCChHHHHHhhHHHHHHh
Q 002847 10 NIRVFCRIRPISMGE--NF---------GRLRPVIAKDSSNVLLKLADNKSKNYSFDKVFHPGSSQDEVFSEVEPVIKSV 78 (874)
Q Consensus 10 nIrV~VRIRPl~~~E--~~---------~~~~~vI~~d~~~v~l~~~~~~~k~F~FD~VF~~~asQeeVF~~V~PlV~sv 78 (874)
+++|+|+|+|..... .. ......+..... .........|.||.+|.+...+..++......++..
T Consensus 306 ~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~~----~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 381 (568)
T COG5059 306 NTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSS----SDSSREIEEIKFDLSEDRSEIEILVFREQSQLSQSS 381 (568)
T ss_pred cEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccCc----CcchHHHHHHHhhhhhhhhhhhhHHHHHHHhhhhhh
Confidence 999999999988432 10 011111111111 001112356899999999999999998888888888
Q ss_pred hcCCCeeEEEeccCCCCcceeccCCCCCCCcHHHHHHHHHHHHHh---cCCeeEEEEEEEEEecceeecccCCCCCCCCC
Q 002847 79 LDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAME---SNHAFRISFSMLEIYLGSLKDLLVTQPTKATD 155 (874)
Q Consensus 79 LdGyN~TIfAYGQTGSGKTyTM~Gs~e~~GIIPRaledLF~~i~e---~~~~f~VsVS~lEIYNEkV~DLL~~~~~~~~~ 155 (874)
++| +++||++++|+++||.- ...++..-.+...|..... ....+...+-++++|-....+++.......
T Consensus 382 ~~~----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-- 453 (568)
T COG5059 382 LSG----IFAYMQSLKKETETLKS--RIDLIMKSIISGTFERKKLLKEEGWKYKSTLQFLRIEIDRLLLLREEELSKK-- 453 (568)
T ss_pred hhh----HHHHHhhhhhhhhcccc--hhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCh--
Confidence 888 99999999999999864 2335555555667765432 222333334444555222222222111100
Q ss_pred CCCCcceeeecCCCcEEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEecCCcccccccee
Q 002847 156 PLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPERRREKNKI 235 (874)
Q Consensus 156 ~~~~~L~I~ed~~ggv~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~d~~e~~~~~SkL 235 (874)
...+............+.........+..... .+...+..+.++.|..++++|.+|..+........... . +
T Consensus 454 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~--~-~ 525 (568)
T COG5059 454 ----KTKIHKLNKLRHDLSSLLSSIPEETSDRVESE-KASKLRSSASTKLNLRSSRSHSKFRDHLNGSNSSTKEL--S-L 525 (568)
T ss_pred ----HHHHHHHHHHHHHHHHhhhhcchhhhhhhhhh-hhccchhhcccchhhhhcccchhhhhcccchhhhhHHH--H-h
Confidence 00000000000000001111111111222222 45778889999999999999999987775433322211 1 7
Q ss_pred EEEeccCccccccccccchhhHHHHHhhhhHHHHHHHHHHHh
Q 002847 236 WLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQ 277 (874)
Q Consensus 236 ~LVDLAGSER~~kt~a~G~rlkEg~~INkSLsALg~VI~ALs 277 (874)
+.|||||+||. -...-|.++++..++|++|..++.+|.++.
T Consensus 526 n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 526 NQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred hhhhccccccc-hhhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 99999999999 888999999999999999999999998764
No 31
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.39 E-value=0.023 Score=59.68 Aligned_cols=50 Identities=26% Similarity=0.624 Sum_probs=34.0
Q ss_pred ceeEeceeeCCCCChHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCcceecc
Q 002847 50 KNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 50 k~F~FD~VF~~~asQeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM~ 101 (874)
..|+||.-+. +..++..|..+..+.+.--..+|. +|-||++|+||||-|.
T Consensus 3 ~~~tFdnfv~-g~~N~~a~~~~~~ia~~~~~~~~~-l~l~G~~G~GKTHLL~ 52 (219)
T PF00308_consen 3 PKYTFDNFVV-GESNELAYAAAKAIAENPGERYNP-LFLYGPSGLGKTHLLQ 52 (219)
T ss_dssp TT-SCCCS---TTTTHHHHHHHHHHHHSTTTSSSE-EEEEESTTSSHHHHHH
T ss_pred CCCccccCCc-CCcHHHHHHHHHHHHhcCCCCCCc-eEEECCCCCCHHHHHH
Confidence 4699999554 456788887777666652233454 7889999999999754
No 32
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=93.36 E-value=0.014 Score=70.78 Aligned_cols=89 Identities=29% Similarity=0.577 Sum_probs=65.4
Q ss_pred CceeEeceeeCCCCChHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCcceeccCCCCCCCcHHHHHHHHHHHHHhcCCee
Q 002847 49 SKNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAMESNHAF 128 (874)
Q Consensus 49 ~k~F~FD~VF~~~asQeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM~Gs~e~~GIIPRaledLF~~i~e~~~~f 128 (874)
...+.|+.+......+.--+....+-+..++++++.. +|++|++.+.....|++.+....++..........
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (670)
T KOG0239|consen 25 KKRFELARVYSPSVGQPSLFSDVQPFVQSALEGLNVK--------AGLTYTMEGSNQPGGLLARLFKELIDLANSDKTSN 96 (670)
T ss_pred ccccCccccccccccccccCCccccchhhhhhhhhcc--------hhhhhhhhhhcCcchhHHHhhhhcccccccCCCch
Confidence 4567888888776666655666666777777777765 79999999999888998888888887543222211
Q ss_pred EEEEEEEEEecceeecccCCCC
Q 002847 129 RISFSMLEIYLGSLKDLLVTQP 150 (874)
Q Consensus 129 ~VsVS~lEIYNEkV~DLL~~~~ 150 (874)
.++.|.+.+.|++....
T Consensus 97 -----~~~~~~~~~~~~~~~~q 113 (670)
T KOG0239|consen 97 -----VVEAYNERLRDLLSELQ 113 (670)
T ss_pred -----hHHHHHHHHhhhccccc
Confidence 57889999999986543
No 33
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=92.51 E-value=0.28 Score=58.03 Aligned_cols=89 Identities=22% Similarity=0.426 Sum_probs=57.4
Q ss_pred ceeEeceeeCCCCChHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCcceeccCC---CCCCCcH----HHHHHHHHHHHH
Q 002847 50 KNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGT---PDSPGIV----PRAIEAIFKQAM 122 (874)
Q Consensus 50 k~F~FD~VF~~~asQeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM~Gs---~e~~GII----PRaledLF~~i~ 122 (874)
..|..-.-|.|.-.|-. +++.+|+.+-.|.-.-+ -.|.|||||||||-.- -.-|-|| --...+||....
T Consensus 3 ~~F~l~s~f~PaGDQP~---AI~~Lv~gi~~g~~~Qt-LLGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~Efk 78 (663)
T COG0556 3 KPFKLHSPFKPAGDQPE---AIAELVEGIENGLKHQT-LLGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSEFK 78 (663)
T ss_pred CceEeccCCCCCCCcHH---HHHHHHHHHhcCceeeE-EeeeccCCchhHHHHHHHHhCCCeEEEecchhHHHHHHHHHH
Confidence 35666677888877754 36777777777765443 4599999999999541 0111111 123455666554
Q ss_pred h--cCCeeEEEEEEEEEeccee
Q 002847 123 E--SNHAFRISFSMLEIYLGSL 142 (874)
Q Consensus 123 e--~~~~f~VsVS~lEIYNEkV 142 (874)
+ ++..+...|||+..|.-.-
T Consensus 79 ~fFP~NaVEYFVSYYDYYQPEA 100 (663)
T COG0556 79 EFFPENAVEYFVSYYDYYQPEA 100 (663)
T ss_pred HhCcCcceEEEeeeccccCccc
Confidence 4 4667888999999995433
No 34
>PRK06620 hypothetical protein; Validated
Probab=91.46 E-value=0.11 Score=54.46 Aligned_cols=50 Identities=22% Similarity=0.355 Sum_probs=35.7
Q ss_pred CceeEeceeeCCCCChHHHHHhhHHHHHHhhcCCC---eeEEEeccCCCCcceecc
Q 002847 49 SKNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYN---ACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 49 ~k~F~FD~VF~~~asQeeVF~~V~PlV~svLdGyN---~TIfAYGQTGSGKTyTM~ 101 (874)
...|+||..+. ..+++..|..+..+.+. -|+| -.++-||++|+||||.+.
T Consensus 10 ~~~~tfd~Fvv-g~~N~~a~~~~~~~~~~--~~~~~~~~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 10 SSKYHPDEFIV-SSSNDQAYNIIKNWQCG--FGVNPYKFTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred CCCCCchhhEe-cccHHHHHHHHHHHHHc--cccCCCcceEEEECCCCCCHHHHHH
Confidence 45689999555 45567788876655542 1444 458999999999999875
No 35
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=90.06 E-value=0.16 Score=61.29 Aligned_cols=51 Identities=27% Similarity=0.560 Sum_probs=36.6
Q ss_pred ceeEeceeeCCCCChHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCcceeccC
Q 002847 50 KNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEG 102 (874)
Q Consensus 50 k~F~FD~VF~~~asQeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM~G 102 (874)
..|+||..+- ..+++.+|..+..+++..-.+||. ||-||.+|+||||-+..
T Consensus 283 ~~~TFDnFvv-G~sN~~A~aaa~avae~~~~~~Np-L~LyG~sGsGKTHLL~A 333 (617)
T PRK14086 283 PKYTFDTFVI-GASNRFAHAAAVAVAEAPAKAYNP-LFIYGESGLGKTHLLHA 333 (617)
T ss_pred CCCCHhhhcC-CCccHHHHHHHHHHHhCccccCCc-EEEECCCCCCHHHHHHH
Confidence 4689998553 334556676666666654456776 89999999999998754
No 36
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=90.04 E-value=0.21 Score=56.76 Aligned_cols=51 Identities=27% Similarity=0.492 Sum_probs=34.3
Q ss_pred CceeEeceeeCCCCChHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCcceecc
Q 002847 49 SKNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 49 ~k~F~FD~VF~~~asQeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM~ 101 (874)
...|+||.-.. +..+...|..+..+.+.--..+| .++-||++|+||||.+.
T Consensus 104 ~~~~tfd~fi~-g~~n~~a~~~~~~~~~~~~~~~n-~l~l~G~~G~GKThL~~ 154 (405)
T TIGR00362 104 NPKYTFDNFVV-GKSNRLAHAAALAVAENPGKAYN-PLFIYGGVGLGKTHLLH 154 (405)
T ss_pred CCCCccccccc-CCcHHHHHHHHHHHHhCcCccCC-eEEEECCCCCcHHHHHH
Confidence 35689998332 45666677766666554212244 47889999999999863
No 37
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=89.91 E-value=0.2 Score=57.88 Aligned_cols=51 Identities=27% Similarity=0.492 Sum_probs=35.0
Q ss_pred CceeEeceeeCCCCChHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCcceecc
Q 002847 49 SKNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 49 ~k~F~FD~VF~~~asQeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM~ 101 (874)
...|+||.-.. +..+...|..+..+.+.--..+| .++-||++|+||||.+.
T Consensus 116 ~~~~tfd~fv~-g~~n~~a~~~~~~~~~~~~~~~~-~l~l~G~~G~GKThL~~ 166 (450)
T PRK00149 116 NPKYTFDNFVV-GKSNRLAHAAALAVAENPGKAYN-PLFIYGGVGLGKTHLLH 166 (450)
T ss_pred CCCCccccccc-CCCcHHHHHHHHHHHhCcCccCC-eEEEECCCCCCHHHHHH
Confidence 35689998333 34666677766666554323445 47889999999999874
No 38
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=89.79 E-value=0.21 Score=58.02 Aligned_cols=50 Identities=26% Similarity=0.564 Sum_probs=35.6
Q ss_pred CceeEeceeeCCCCChHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCcceecc
Q 002847 49 SKNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 49 ~k~F~FD~VF~~~asQeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM~ 101 (874)
...|+||.-.. +.++...|..+..+.+. -..||. +|-||++|+||||.+.
T Consensus 99 ~~~~tFdnFv~-g~~n~~a~~~~~~~~~~-~~~~n~-l~lyG~~G~GKTHLl~ 148 (440)
T PRK14088 99 NPDYTFENFVV-GPGNSFAYHAALEVAKN-PGRYNP-LFIYGGVGLGKTHLLQ 148 (440)
T ss_pred CCCCccccccc-CCchHHHHHHHHHHHhC-cCCCCe-EEEEcCCCCcHHHHHH
Confidence 35699999554 45667777766555543 123675 9999999999999874
No 39
>PRK12377 putative replication protein; Provisional
Probab=89.16 E-value=0.31 Score=52.72 Aligned_cols=51 Identities=20% Similarity=0.319 Sum_probs=39.0
Q ss_pred eeEeceeeCCCCChHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCcceeccC
Q 002847 51 NYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEG 102 (874)
Q Consensus 51 ~F~FD~VF~~~asQeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM~G 102 (874)
..+||........|..++..+..+++.+..+. ..++-||++|+||||.+.+
T Consensus 70 ~~tFdnf~~~~~~~~~a~~~a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~A 120 (248)
T PRK12377 70 KCSFANYQVQNDGQRYALSQAKSIADELMTGC-TNFVFSGKPGTGKNHLAAA 120 (248)
T ss_pred cCCcCCcccCChhHHHHHHHHHHHHHHHHhcC-CeEEEECCCCCCHHHHHHH
Confidence 34788755556677778887788888777654 4688899999999998754
No 40
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.36 E-value=0.27 Score=54.94 Aligned_cols=31 Identities=29% Similarity=0.583 Sum_probs=27.9
Q ss_pred hHHHHHHhhcCCCeeEEEeccCCCCcceecc
Q 002847 71 VEPVIKSVLDGYNACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 71 V~PlV~svLdGyN~TIfAYGQTGSGKTyTM~ 101 (874)
+-|++..+++--++.|+.-|+||||||.||-
T Consensus 113 lP~i~~~~~~~~~GLILVTGpTGSGKSTTlA 143 (353)
T COG2805 113 LPPIVRELAESPRGLILVTGPTGSGKSTTLA 143 (353)
T ss_pred CCHHHHHHHhCCCceEEEeCCCCCcHHHHHH
Confidence 3578888999999999999999999999973
No 41
>PRK06893 DNA replication initiation factor; Validated
Probab=88.29 E-value=0.41 Score=50.52 Aligned_cols=49 Identities=14% Similarity=0.314 Sum_probs=32.4
Q ss_pred CceeEeceeeCCCCChHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCcceeccC
Q 002847 49 SKNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEG 102 (874)
Q Consensus 49 ~k~F~FD~VF~~~asQeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM~G 102 (874)
...++||..+... +..-+ ..+.+.+-.++|..++-||++|+||||.+.+
T Consensus 10 ~~~~~fd~f~~~~-~~~~~----~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a 58 (229)
T PRK06893 10 IDDETLDNFYADN-NLLLL----DSLRKNFIDLQQPFFYIWGGKSSGKSHLLKA 58 (229)
T ss_pred CCcccccccccCC-hHHHH----HHHHHHhhccCCCeEEEECCCCCCHHHHHHH
Confidence 3468899988654 22222 2222333357788899999999999998643
No 42
>PRK08116 hypothetical protein; Validated
Probab=88.14 E-value=0.3 Score=53.07 Aligned_cols=51 Identities=18% Similarity=0.416 Sum_probs=37.9
Q ss_pred ceeEeceeeCCCCChHHHHHhhHHHHHHhhc--CCCeeEEEeccCCCCcceecc
Q 002847 50 KNYSFDKVFHPGSSQDEVFSEVEPVIKSVLD--GYNACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 50 k~F~FD~VF~~~asQeeVF~~V~PlV~svLd--GyN~TIfAYGQTGSGKTyTM~ 101 (874)
..++||.-. .+..+...|..+...++.+.. ..+..++-||.+|+||||.+.
T Consensus 80 ~~~tFdnf~-~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~ 132 (268)
T PRK08116 80 RNSTFENFL-FDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAA 132 (268)
T ss_pred Hhcchhccc-CChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHH
Confidence 457888744 466677778777777777654 345569999999999999764
No 43
>PRK08084 DNA replication initiation factor; Provisional
Probab=88.13 E-value=0.37 Score=51.11 Aligned_cols=49 Identities=12% Similarity=0.436 Sum_probs=33.6
Q ss_pred CceeEeceeeCCCCChHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCcceeccC
Q 002847 49 SKNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEG 102 (874)
Q Consensus 49 ~k~F~FD~VF~~~asQeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM~G 102 (874)
...|+||.-+.. .+...+..+..+.. ......++-||++|+||||.+.+
T Consensus 16 ~~~~~fd~f~~~--~n~~a~~~l~~~~~---~~~~~~l~l~Gp~G~GKThLl~a 64 (235)
T PRK08084 16 PDDETFASFYPG--DNDSLLAALQNALR---QEHSGYIYLWSREGAGRSHLLHA 64 (235)
T ss_pred CCcCCccccccC--ccHHHHHHHHHHHh---CCCCCeEEEECCCCCCHHHHHHH
Confidence 345788875543 56667776655543 12224789999999999998753
No 44
>PRK07952 DNA replication protein DnaC; Validated
Probab=87.11 E-value=0.51 Score=50.94 Aligned_cols=52 Identities=19% Similarity=0.252 Sum_probs=37.5
Q ss_pred ceeEeceeeCCCCChHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCcceeccC
Q 002847 50 KNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEG 102 (874)
Q Consensus 50 k~F~FD~VF~~~asQeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM~G 102 (874)
...+||........|..++..+...++.+..|.. .++-||.+|+||||.+.+
T Consensus 67 ~~~tFdnf~~~~~~q~~al~~a~~~~~~~~~~~~-~~~l~G~~GtGKThLa~a 118 (244)
T PRK07952 67 QNCSFENYRVECEGQMNALSKARQYVEEFDGNIA-SFIFSGKPGTGKNHLAAA 118 (244)
T ss_pred cCCccccccCCCchHHHHHHHHHHHHHhhccCCc-eEEEECCCCCCHHHHHHH
Confidence 3467887544455677788777777776655543 688999999999998654
No 45
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=86.89 E-value=0.39 Score=55.50 Aligned_cols=51 Identities=29% Similarity=0.592 Sum_probs=34.1
Q ss_pred CceeEeceeeCCCCChHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCcceecc
Q 002847 49 SKNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 49 ~k~F~FD~VF~~~asQeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM~ 101 (874)
...|+||. |-.+.+++-.|..+..+-+.--.-|| -||-||.+|+||||-|-
T Consensus 81 ~~~ytFdn-Fv~g~~N~~A~aa~~~va~~~g~~~n-plfi~G~~GlGKTHLl~ 131 (408)
T COG0593 81 NPKYTFDN-FVVGPSNRLAYAAAKAVAENPGGAYN-PLFIYGGVGLGKTHLLQ 131 (408)
T ss_pred CCCCchhh-eeeCCchHHHHHHHHHHHhccCCcCC-cEEEECCCCCCHHHHHH
Confidence 45799999 44456666666554433333222245 58999999999999884
No 46
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=86.88 E-value=0.42 Score=55.78 Aligned_cols=49 Identities=33% Similarity=0.594 Sum_probs=33.3
Q ss_pred eeEeceeeCCCCChHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCcceecc
Q 002847 51 NYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 51 ~F~FD~VF~~~asQeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM~ 101 (874)
.|+||.-.. ..+++..|..+..++..--..|| .+|-||.+|+||||.|.
T Consensus 111 ~~tFdnFv~-g~~n~~A~~aa~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~ 159 (450)
T PRK14087 111 ENTFENFVI-GSSNEQAFIAVQTVSKNPGISYN-PLFIYGESGMGKTHLLK 159 (450)
T ss_pred ccchhcccC-CCcHHHHHHHHHHHHhCcCcccC-ceEEECCCCCcHHHHHH
Confidence 589999554 44566677666655543212245 48899999999999874
No 47
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=86.86 E-value=0.34 Score=57.07 Aligned_cols=32 Identities=25% Similarity=0.330 Sum_probs=27.6
Q ss_pred hHHHHHHhhcCCCeeEEEeccCCCCcceeccC
Q 002847 71 VEPVIKSVLDGYNACIFAYGQTGTGKSFTMEG 102 (874)
Q Consensus 71 V~PlV~svLdGyN~TIfAYGQTGSGKTyTM~G 102 (874)
....+..++..-++-|+.-|+||||||.||+.
T Consensus 246 ~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 246 QLARLLRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred HHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 34566778899999999999999999999975
No 48
>PRK05642 DNA replication initiation factor; Validated
Probab=86.27 E-value=0.57 Score=49.74 Aligned_cols=51 Identities=16% Similarity=0.347 Sum_probs=30.7
Q ss_pred CceeEeceeeCCCCChHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCcceecc
Q 002847 49 SKNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 49 ~k~F~FD~VF~~~asQeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM~ 101 (874)
...|+||.-+.. .+...+..+..+.+..-..-...++-||++|+||||-+.
T Consensus 13 ~~~~tfdnF~~~--~~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~ 63 (234)
T PRK05642 13 RDDATFANYYPG--ANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQ 63 (234)
T ss_pred CCcccccccCcC--ChHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHH
Confidence 346899996633 234444444433332111113568999999999999764
No 49
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=86.00 E-value=0.63 Score=47.84 Aligned_cols=47 Identities=17% Similarity=0.487 Sum_probs=33.5
Q ss_pred CceeEeceeeCCCCChHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 49 SKNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 49 ~k~F~FD~VF~~~asQeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
...|+||.... ..+..++..++.++. ......|+-||++|+||||..
T Consensus 9 ~~~~~~~~~~~--~~~~~~~~~l~~~~~---~~~~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 9 PDDPTFDNFYA--GGNAELLAALRQLAA---GKGDRFLYLWGESGSGKSHLL 55 (226)
T ss_pred CCchhhcCcCc--CCcHHHHHHHHHHHh---cCCCCeEEEECCCCCCHHHHH
Confidence 34578887663 255666666655543 456778999999999999975
No 50
>PRK09087 hypothetical protein; Validated
Probab=85.48 E-value=0.53 Score=49.93 Aligned_cols=48 Identities=19% Similarity=0.239 Sum_probs=32.3
Q ss_pred CceeEeceeeCCCCChHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCcceecc
Q 002847 49 SKNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 49 ~k~F~FD~VF~~~asQeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM~ 101 (874)
...|+||.-+.. ..+..+|..+... ..-.+..++-||++||||||-+.
T Consensus 15 ~~~~~~~~Fi~~-~~N~~a~~~l~~~----~~~~~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 15 DPAYGRDDLLVT-ESNRAAVSLVDHW----PNWPSPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCCCChhceeec-CchHHHHHHHHhc----ccCCCCeEEEECCCCCCHHHHHH
Confidence 356889996653 3445577754322 22235568999999999999875
No 51
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=85.01 E-value=0.84 Score=47.48 Aligned_cols=49 Identities=16% Similarity=0.418 Sum_probs=32.4
Q ss_pred CceeEeceeeCCCCChHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCcceecc
Q 002847 49 SKNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 49 ~k~F~FD~VF~~~asQeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM~ 101 (874)
...|+||..+. .. .+.+...++.++.. .+.+..++-||++|+||||.+.
T Consensus 12 ~~~~~~d~f~~-~~-~~~~~~~l~~~~~~--~~~~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 12 PPPPTFDNFVA-GE-NAELVARLRELAAG--PVADRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred CChhhhccccc-CC-cHHHHHHHHHHHhc--cCCCCeEEEECCCCCCHHHHHH
Confidence 45688999773 22 33455555555442 2345678999999999999753
No 52
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=84.27 E-value=1.9 Score=49.32 Aligned_cols=33 Identities=33% Similarity=0.609 Sum_probs=23.5
Q ss_pred HHhhHHHHHHhhcCCCee-EEEeccCCCCcceec
Q 002847 68 FSEVEPVIKSVLDGYNAC-IFAYGQTGTGKSFTM 100 (874)
Q Consensus 68 F~~V~PlV~svLdGyN~T-IfAYGQTGSGKTyTM 100 (874)
+..+..++..++.|.-.. ++.||.||||||.|+
T Consensus 26 i~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 26 INQLASFLAPALRGERPSNIIIYGPTGTGKTATV 59 (366)
T ss_pred HHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHH
Confidence 334455566666665444 999999999998764
No 53
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=83.75 E-value=0.92 Score=50.24 Aligned_cols=46 Identities=33% Similarity=0.519 Sum_probs=29.6
Q ss_pred ceeeCCCCChHHHHHhhHHHHHHhhcC-CCeeEEEeccCCCCcceec
Q 002847 55 DKVFHPGSSQDEVFSEVEPVIKSVLDG-YNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 55 D~VF~~~asQeeVF~~V~PlV~svLdG-yN~TIfAYGQTGSGKTyTM 100 (874)
|++...=...++-++.+...+..++.| ....++-||++|+|||+++
T Consensus 11 ~~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 11 DYVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 333333344555555555555555544 5568999999999999864
No 54
>PRK06835 DNA replication protein DnaC; Validated
Probab=83.09 E-value=0.64 Score=52.27 Aligned_cols=36 Identities=25% Similarity=0.480 Sum_probs=26.2
Q ss_pred HHHHhhHHHHHHhhcCCCeeEEEeccCCCCcceeccC
Q 002847 66 EVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEG 102 (874)
Q Consensus 66 eVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM~G 102 (874)
.++..+...|+.+-.+. ..|+-||++|+||||.+.+
T Consensus 167 ~~~~~~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~a 202 (329)
T PRK06835 167 KILEKCKNFIENFDKNN-ENLLFYGNTGTGKTFLSNC 202 (329)
T ss_pred HHHHHHHHHHHHHhccC-CcEEEECCCCCcHHHHHHH
Confidence 34444556777766544 5699999999999997654
No 55
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=81.72 E-value=1.1 Score=52.49 Aligned_cols=51 Identities=22% Similarity=0.406 Sum_probs=35.1
Q ss_pred CceeEeceeeCCCCChHHHHHhhHHHHHHh--hcC--CCeeEEEeccCCCCcceecc
Q 002847 49 SKNYSFDKVFHPGSSQDEVFSEVEPVIKSV--LDG--YNACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 49 ~k~F~FD~VF~~~asQeeVF~~V~PlV~sv--LdG--yN~TIfAYGQTGSGKTyTM~ 101 (874)
...|+||.-.. +.+++..|..+..+.+.. ..| ||. ++-||++|+||||.+.
T Consensus 105 ~~~~tFdnFv~-g~~N~~a~~~a~~~a~~~~~~~~~~~np-l~L~G~~G~GKTHLl~ 159 (445)
T PRK12422 105 DPLMTFANFLV-TPENDLPHRILQEFTKVSEQGKGFPFNP-IYLFGPEGSGKTHLMQ 159 (445)
T ss_pred Cccccccceee-CCcHHHHHHHHHHHHhccccccCCCCce-EEEEcCCCCCHHHHHH
Confidence 45699999554 446666776666665533 223 454 6789999999999864
No 56
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=81.04 E-value=1.3 Score=47.87 Aligned_cols=51 Identities=14% Similarity=0.221 Sum_probs=37.3
Q ss_pred ceeEeceeeCCCCChHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCcceeccC
Q 002847 50 KNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEG 102 (874)
Q Consensus 50 k~F~FD~VF~~~asQeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM~G 102 (874)
+.|.|..+-.....+..++..+..+++.+-+|.| ++-||++|+||||-..+
T Consensus 74 k~~~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~n--l~l~G~~G~GKThLa~A 124 (254)
T COG1484 74 KTFEEFDFEFQPGIDKKALEDLASLVEFFERGEN--LVLLGPPGVGKTHLAIA 124 (254)
T ss_pred CCcccccccCCcchhHHHHHHHHHHHHHhccCCc--EEEECCCCCcHHHHHHH
Confidence 4565555445566788888888888777664444 57899999999997654
No 57
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=80.90 E-value=1 Score=43.81 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=21.2
Q ss_pred HHHHHHhhcC-CCeeEEEeccCCCCcceeccC
Q 002847 72 EPVIKSVLDG-YNACIFAYGQTGTGKSFTMEG 102 (874)
Q Consensus 72 ~PlV~svLdG-yN~TIfAYGQTGSGKTyTM~G 102 (874)
..+++.+-.+ ....++..++||||||++|..
T Consensus 13 ~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 13 ARIINSLENKKEERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp HHHHHHHHTTSGCSEEEEEESTTSSHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCCcChhhhh
Confidence 3444444444 355667778999999999874
No 58
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=80.62 E-value=1.5 Score=49.09 Aligned_cols=39 Identities=26% Similarity=0.468 Sum_probs=26.6
Q ss_pred CChHHHHHhhHHHHHHhhc-CCCeeEEEeccCCCCcceec
Q 002847 62 SSQDEVFSEVEPVIKSVLD-GYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 62 asQeeVF~~V~PlV~svLd-GyN~TIfAYGQTGSGKTyTM 100 (874)
...++-++.+...+..++. +....++-||++|+|||+++
T Consensus 33 ~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 33 PHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHH
Confidence 3445555555555555554 44567899999999999864
No 59
>PRK08939 primosomal protein DnaI; Reviewed
Probab=79.33 E-value=1.1 Score=49.89 Aligned_cols=51 Identities=16% Similarity=0.280 Sum_probs=33.9
Q ss_pred eEeceeeCCCCChHHHHHhhHHHHHHhhcC-CCeeEEEeccCCCCcceeccC
Q 002847 52 YSFDKVFHPGSSQDEVFSEVEPVIKSVLDG-YNACIFAYGQTGTGKSFTMEG 102 (874)
Q Consensus 52 F~FD~VF~~~asQeeVF~~V~PlV~svLdG-yN~TIfAYGQTGSGKTyTM~G 102 (874)
.+||.+-.....+..++..+...++....| ..-.++-||++|+||||-+.+
T Consensus 124 atf~~~~~~~~~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred CcHHHhcCCChHHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHH
Confidence 456664333335666666556666665543 234699999999999998754
No 60
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=78.28 E-value=1.5 Score=39.99 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=17.7
Q ss_pred HHhhcCCCeeEEEeccCCCCcceec
Q 002847 76 KSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 76 ~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
..+.......++.+|++|+|||+.+
T Consensus 12 ~~~~~~~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 12 EALELPPPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred HHHhCCCCCeEEEECCCCCCHHHHH
Confidence 3333334456889999999999764
No 61
>PRK06526 transposase; Provisional
Probab=76.64 E-value=1.2 Score=48.26 Aligned_cols=40 Identities=20% Similarity=0.268 Sum_probs=24.8
Q ss_pred eCCCCChHHHHHh-hHHHHHHhhcCCCeeEEEeccCCCCcceeccC
Q 002847 58 FHPGSSQDEVFSE-VEPVIKSVLDGYNACIFAYGQTGTGKSFTMEG 102 (874)
Q Consensus 58 F~~~asQeeVF~~-V~PlV~svLdGyN~TIfAYGQTGSGKTyTM~G 102 (874)
+.+...+..+..- ....++ .+.| |+.||++|+||||.+.+
T Consensus 77 ~~~~~~~~~~~~l~~~~fi~---~~~n--lll~Gp~GtGKThLa~a 117 (254)
T PRK06526 77 HQRSLKRDTIAHLGTLDFVT---GKEN--VVFLGPPGTGKTHLAIG 117 (254)
T ss_pred cCCCcchHHHHHHhcCchhh---cCce--EEEEeCCCCchHHHHHH
Confidence 4444455444332 223333 3444 79999999999999864
No 62
>PRK08727 hypothetical protein; Validated
Probab=76.33 E-value=1.9 Score=45.75 Aligned_cols=45 Identities=18% Similarity=0.406 Sum_probs=27.2
Q ss_pred ceeEeceeeCCCCChHHHHHhhHHHHHHhhcCC-CeeEEEeccCCCCcceecc
Q 002847 50 KNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGY-NACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 50 k~F~FD~VF~~~asQeeVF~~V~PlV~svLdGy-N~TIfAYGQTGSGKTyTM~ 101 (874)
..|+||.-+. +.++ ....+..+. .|. .-.|+-||++|+||||.+.
T Consensus 14 ~~~~f~~f~~-~~~n--~~~~~~~~~----~~~~~~~l~l~G~~G~GKThL~~ 59 (233)
T PRK08727 14 SDQRFDSYIA-APDG--LLAQLQALA----AGQSSDWLYLSGPAGTGKTHLAL 59 (233)
T ss_pred CcCChhhccC-CcHH--HHHHHHHHH----hccCCCeEEEECCCCCCHHHHHH
Confidence 4578888553 3333 222222222 233 2359999999999999764
No 63
>PF13245 AAA_19: Part of AAA domain
Probab=75.95 E-value=1.4 Score=39.21 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=18.2
Q ss_pred HHHhhcCCCeeEEEeccCCCCcceecc
Q 002847 75 IKSVLDGYNACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 75 V~svLdGyN~TIfAYGQTGSGKTyTM~ 101 (874)
|..++. -+..++..|+.|||||+|+.
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~~ 28 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTLA 28 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHHH
Confidence 454555 34445558999999999863
No 64
>PRK08181 transposase; Validated
Probab=75.46 E-value=2 Score=47.15 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=17.5
Q ss_pred cCCCeeEEEeccCCCCcceeccC
Q 002847 80 DGYNACIFAYGQTGTGKSFTMEG 102 (874)
Q Consensus 80 dGyN~TIfAYGQTGSGKTyTM~G 102 (874)
.|.| |+-||++|+||||-+.+
T Consensus 105 ~~~n--lll~Gp~GtGKTHLa~A 125 (269)
T PRK08181 105 KGAN--LLLFGPPGGGKSHLAAA 125 (269)
T ss_pred cCce--EEEEecCCCcHHHHHHH
Confidence 4555 89999999999998765
No 65
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=75.36 E-value=1.1 Score=40.33 Aligned_cols=17 Identities=24% Similarity=0.366 Sum_probs=14.8
Q ss_pred EEEeccCCCCcceeccC
Q 002847 86 IFAYGQTGTGKSFTMEG 102 (874)
Q Consensus 86 IfAYGQTGSGKTyTM~G 102 (874)
++.+|+||+|||+++..
T Consensus 3 ~~i~~~~G~GKT~~~~~ 19 (144)
T cd00046 3 VLLAAPTGSGKTLAALL 19 (144)
T ss_pred EEEECCCCCchhHHHHH
Confidence 57889999999999864
No 66
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=75.17 E-value=1.3 Score=55.69 Aligned_cols=38 Identities=29% Similarity=0.502 Sum_probs=25.9
Q ss_pred ChHHHHHhhHHHHHHhhc--CCCeeEEEeccCCCCcceec
Q 002847 63 SQDEVFSEVEPVIKSVLD--GYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 63 sQeeVF~~V~PlV~svLd--GyN~TIfAYGQTGSGKTyTM 100 (874)
.-++=++.+..++..++. |-+.+|+.||++|+|||.|+
T Consensus 759 hREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 759 CREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATV 798 (1164)
T ss_pred ChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHH
Confidence 334444455555555554 44567889999999999986
No 67
>PRK06921 hypothetical protein; Provisional
Probab=74.75 E-value=2.4 Score=46.25 Aligned_cols=51 Identities=20% Similarity=0.381 Sum_probs=30.6
Q ss_pred eeEeceeeCCCC-Ch--HHHHHhhHHHHHHhhc---CCCeeEEEeccCCCCcceeccC
Q 002847 51 NYSFDKVFHPGS-SQ--DEVFSEVEPVIKSVLD---GYNACIFAYGQTGTGKSFTMEG 102 (874)
Q Consensus 51 ~F~FD~VF~~~a-sQ--eeVF~~V~PlV~svLd---GyN~TIfAYGQTGSGKTyTM~G 102 (874)
.++||. |..+. .+ ..++..+...++.+-. +....++-||++|+||||.+..
T Consensus 80 ~~~F~n-f~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~a 136 (266)
T PRK06921 80 KLTFKN-FKTEGKPQAIKDAYECAVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTA 136 (266)
T ss_pred hhhhhc-CccCCccHHHHHHHHHHHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHH
Confidence 356665 33222 22 3344445556665532 2345689999999999998653
No 68
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=73.44 E-value=1.7 Score=52.26 Aligned_cols=29 Identities=17% Similarity=0.375 Sum_probs=24.5
Q ss_pred HHHHhhcCCCeeEEEeccCCCCcceeccC
Q 002847 74 VIKSVLDGYNACIFAYGQTGTGKSFTMEG 102 (874)
Q Consensus 74 lV~svLdGyN~TIfAYGQTGSGKTyTM~G 102 (874)
.+..++..-++.|+..|+||||||.||..
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~a 335 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLYT 335 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHHH
Confidence 55677777889999999999999999743
No 69
>PRK10436 hypothetical protein; Provisional
Probab=73.10 E-value=1.8 Score=50.92 Aligned_cols=29 Identities=28% Similarity=0.444 Sum_probs=24.2
Q ss_pred HHHHHhhcCCCeeEEEeccCCCCcceecc
Q 002847 73 PVIKSVLDGYNACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 73 PlV~svLdGyN~TIfAYGQTGSGKTyTM~ 101 (874)
..+..++..-++.|+..|+||||||.||.
T Consensus 208 ~~l~~~~~~~~GliLvtGpTGSGKTTtL~ 236 (462)
T PRK10436 208 AQFRQALQQPQGLILVTGPTGSGKTVTLY 236 (462)
T ss_pred HHHHHHHHhcCCeEEEECCCCCChHHHHH
Confidence 34566677788999999999999999984
No 70
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=72.98 E-value=2 Score=46.87 Aligned_cols=42 Identities=19% Similarity=0.395 Sum_probs=26.8
Q ss_pred EeceeeCCCCChHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCcceecc
Q 002847 53 SFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 53 ~FD~VF~~~asQeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM~ 101 (874)
.||.+.+ |+++.+.+..++. .|....++-||++|+|||++..
T Consensus 13 ~~~~~~g----~~~~~~~L~~~~~---~~~~~~lll~Gp~GtGKT~la~ 54 (337)
T PRK12402 13 LLEDILG----QDEVVERLSRAVD---SPNLPHLLVQGPPGSGKTAAVR 54 (337)
T ss_pred cHHHhcC----CHHHHHHHHHHHh---CCCCceEEEECCCCCCHHHHHH
Confidence 4666653 4555544444333 3443458889999999999863
No 71
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=72.53 E-value=1.5 Score=39.37 Aligned_cols=18 Identities=28% Similarity=0.486 Sum_probs=15.4
Q ss_pred eeEEEeccCCCCcceecc
Q 002847 84 ACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 84 ~TIfAYGQTGSGKTyTM~ 101 (874)
..++-+|++|||||+++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~ 20 (148)
T smart00382 3 EVILIVGPPGSGKTTLAR 20 (148)
T ss_pred CEEEEECCCCCcHHHHHH
Confidence 467889999999999874
No 72
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=72.43 E-value=2.1 Score=50.69 Aligned_cols=29 Identities=24% Similarity=0.393 Sum_probs=24.2
Q ss_pred HHHHHhhcCCCeeEEEeccCCCCcceecc
Q 002847 73 PVIKSVLDGYNACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 73 PlV~svLdGyN~TIfAYGQTGSGKTyTM~ 101 (874)
..+..++..-++.|+..|+||||||.||.
T Consensus 232 ~~l~~~~~~~~GlilitGptGSGKTTtL~ 260 (486)
T TIGR02533 232 SRFERLIRRPHGIILVTGPTGSGKTTTLY 260 (486)
T ss_pred HHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 35566777778899999999999999985
No 73
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=72.01 E-value=2.2 Score=41.30 Aligned_cols=26 Identities=27% Similarity=0.583 Sum_probs=20.4
Q ss_pred HHHHhhcCCCeeEEEeccCCCCcceecc
Q 002847 74 VIKSVLDGYNACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 74 lV~svLdGyN~TIfAYGQTGSGKTyTM~ 101 (874)
++..+++|.| ++..|+||+|||....
T Consensus 7 ~~~~i~~~~~--~li~aptGsGKT~~~~ 32 (169)
T PF00270_consen 7 AIEAIISGKN--VLISAPTGSGKTLAYI 32 (169)
T ss_dssp HHHHHHTTSE--EEEECSTTSSHHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCccHHHHH
Confidence 4556667766 7788999999999864
No 74
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=71.49 E-value=1.5 Score=43.16 Aligned_cols=34 Identities=15% Similarity=0.368 Sum_probs=18.1
Q ss_pred HHHhhHHHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 67 VFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 67 VF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
.++.+..+++....|....++.+|.+|+|||+.+
T Consensus 8 e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 8 EIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp HHHHHHHTTGGTSS-----EEE-B-TTSSHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHH
Confidence 3344445555334666788999999999999863
No 75
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=71.21 E-value=2.2 Score=47.89 Aligned_cols=30 Identities=33% Similarity=0.567 Sum_probs=23.0
Q ss_pred HHHHHHhhcCCCeeEEEeccCCCCcceecc
Q 002847 72 EPVIKSVLDGYNACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 72 ~PlV~svLdGyN~TIfAYGQTGSGKTyTM~ 101 (874)
.+.+..++.--.+.|+..|+||||||.||.
T Consensus 111 ~~~l~~~~~~~~g~ili~G~tGSGKTT~l~ 140 (343)
T TIGR01420 111 PPVLRELAERPRGLILVTGPTGSGKSTTLA 140 (343)
T ss_pred CHHHHHHHhhcCcEEEEECCCCCCHHHHHH
Confidence 355556665456789999999999999974
No 76
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=70.96 E-value=1.5 Score=40.94 Aligned_cols=30 Identities=20% Similarity=0.310 Sum_probs=19.0
Q ss_pred CeeEEEeccCCCCcceeccCCCCCCCcHHHHHHHHHHHHH
Q 002847 83 NACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAM 122 (874)
Q Consensus 83 N~TIfAYGQTGSGKTyTM~Gs~e~~GIIPRaledLF~~i~ 122 (874)
..+++.+|.+|+|||.++ .+.++++.....
T Consensus 4 ~~~~~i~G~~G~GKT~~~----------~~~~~~~~~~~~ 33 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI----------KRLARQLNAEAE 33 (131)
T ss_dssp ---EEEEE-TTSSHHHHH----------HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHH----------HHHHHHhHHhhh
Confidence 457899999999999865 455565555443
No 77
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=69.98 E-value=2.6 Score=43.60 Aligned_cols=29 Identities=21% Similarity=0.402 Sum_probs=21.3
Q ss_pred HHHHHhhcCCCeeEEEeccCCCCcceecc
Q 002847 73 PVIKSVLDGYNACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 73 PlV~svLdGyN~TIfAYGQTGSGKTyTM~ 101 (874)
..|..++...+..++..|..||||||+|.
T Consensus 8 ~a~~~~l~~~~~~~~l~G~aGtGKT~~l~ 36 (196)
T PF13604_consen 8 EAVRAILTSGDRVSVLQGPAGTGKTTLLK 36 (196)
T ss_dssp HHHHHHHHCTCSEEEEEESTTSTHHHHHH
T ss_pred HHHHHHHhcCCeEEEEEECCCCCHHHHHH
Confidence 35566666665556668999999999863
No 78
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=69.40 E-value=1.9 Score=44.48 Aligned_cols=19 Identities=37% Similarity=0.609 Sum_probs=16.3
Q ss_pred CeeEEEeccCCCCcceecc
Q 002847 83 NACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 83 N~TIfAYGQTGSGKTyTM~ 101 (874)
.+.|+-.|+||||||.++.
T Consensus 1 ~GlilI~GptGSGKTTll~ 19 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3678899999999999874
No 79
>PF12846 AAA_10: AAA-like domain
Probab=69.32 E-value=1.9 Score=45.48 Aligned_cols=19 Identities=32% Similarity=0.595 Sum_probs=16.1
Q ss_pred CeeEEEeccCCCCcceecc
Q 002847 83 NACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 83 N~TIfAYGQTGSGKTyTM~ 101 (874)
|..++..|.||||||++|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~ 19 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK 19 (304)
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 5567889999999998864
No 80
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=69.24 E-value=2.2 Score=43.00 Aligned_cols=30 Identities=27% Similarity=0.478 Sum_probs=21.5
Q ss_pred hHHHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 71 VEPVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 71 V~PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
++.+.+.+-.|.+..++.||+.|+|||+.|
T Consensus 8 l~~l~~~l~~~~~~~~~l~G~rg~GKTsLl 37 (234)
T PF01637_consen 8 LEKLKELLESGPSQHILLYGPRGSGKTSLL 37 (234)
T ss_dssp HHHHHHCHHH--SSEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHHhhcCcEEEEEcCCcCCHHHHH
Confidence 344444444667889999999999999876
No 81
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=68.84 E-value=4.1 Score=44.45 Aligned_cols=130 Identities=19% Similarity=0.273 Sum_probs=67.7
Q ss_pred eEeceeeCCCCChHHHHHhhHHHHHHhhcCCCe-eEEEeccCCCCcceeccCCCCCCCcHHHHHHHHHHHHHhcCCeeEE
Q 002847 52 YSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNA-CIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAMESNHAFRI 130 (874)
Q Consensus 52 F~FD~VF~~~asQeeVF~~V~PlV~svLdGyN~-TIfAYGQTGSGKTyTM~Gs~e~~GIIPRaledLF~~i~e~~~~f~V 130 (874)
..+|...+-+...+.+.+.+ ..+++|..+ -++-||..|||||.++ ..|+......+
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt----~~Fl~G~pannvLL~G~rGtGKSSlV--------------kall~~y~~~G----- 80 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENT----EQFLQGLPANNVLLWGARGTGKSSLV--------------KALLNEYADQG----- 80 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHH----HHHHcCCCCcceEEecCCCCCHHHHH--------------HHHHHHHhhcC-----
Confidence 34455554433333333333 556777743 3677999999998764 33343333333
Q ss_pred EEEEEEEecceeecccCCCCCCCCCCCCCcceeeecC-CCcEEecCcEEEEe-CCHHHHHHHHHHhccccccccccCCCC
Q 002847 131 SFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEP-KGGIEIDNLVTIQV-NDFNQALRLYRLGCRFRSTASTNSNRT 208 (874)
Q Consensus 131 sVS~lEIYNEkV~DLL~~~~~~~~~~~~~~L~I~ed~-~ggv~V~gLtev~V-~S~eEal~lL~~G~~nR~tasT~~N~~ 208 (874)
+..+||..+.+.||-.--. .++..+ +--+++.+|+--.- .+...+..+|.-|...| ....-...+
T Consensus 81 -LRlIev~k~~L~~l~~l~~-----------~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~-P~NvliyAT 147 (249)
T PF05673_consen 81 -LRLIEVSKEDLGDLPELLD-----------LLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEAR-PDNVLIYAT 147 (249)
T ss_pred -ceEEEECHHHhccHHHHHH-----------HHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccC-CCcEEEEEe
Confidence 4569999887766631100 000011 11234455552222 23455566665555443 344455677
Q ss_pred CCCceEEEE
Q 002847 209 SSRSHCMIR 217 (874)
Q Consensus 209 SSRSHaIft 217 (874)
|.|-|.|-.
T Consensus 148 SNRRHLv~E 156 (249)
T PF05673_consen 148 SNRRHLVPE 156 (249)
T ss_pred cchhhccch
Confidence 888887643
No 82
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=68.78 E-value=2.8 Score=47.80 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=19.5
Q ss_pred hhcCCCeeEEEeccCCCCcceecc
Q 002847 78 VLDGYNACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 78 vLdGyN~TIfAYGQTGSGKTyTM~ 101 (874)
.+.--.+.|+..|+||||||.||.
T Consensus 129 ~~~~~~glilI~GpTGSGKTTtL~ 152 (358)
T TIGR02524 129 AIAPQEGIVFITGATGSGKSTLLA 152 (358)
T ss_pred HHhccCCEEEEECCCCCCHHHHHH
Confidence 344457899999999999999874
No 83
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=68.27 E-value=2.9 Score=47.92 Aligned_cols=28 Identities=29% Similarity=0.354 Sum_probs=20.9
Q ss_pred HHHHHhhcCCCeeEEEeccCCCCcceecc
Q 002847 73 PVIKSVLDGYNACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 73 PlV~svLdGyN~TIfAYGQTGSGKTyTM~ 101 (874)
++++.++. .++.|+..|+||||||+||.
T Consensus 140 ~~~~~l~~-~~GlilI~G~TGSGKTT~l~ 167 (372)
T TIGR02525 140 DLFNSLLP-AAGLGLICGETGSGKSTLAA 167 (372)
T ss_pred HHHHHHHh-cCCEEEEECCCCCCHHHHHH
Confidence 44454443 56678899999999999973
No 84
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=68.15 E-value=2 Score=44.70 Aligned_cols=17 Identities=47% Similarity=0.708 Sum_probs=14.0
Q ss_pred eEEEeccCCCCcceecc
Q 002847 85 CIFAYGQTGTGKSFTME 101 (874)
Q Consensus 85 TIfAYGQTGSGKTyTM~ 101 (874)
-+..+|.||||||+|+-
T Consensus 25 H~~I~G~TGsGKS~~~~ 41 (229)
T PF01935_consen 25 HIAIFGTTGSGKSNTVK 41 (229)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 35577999999999973
No 85
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=67.69 E-value=2.4 Score=45.29 Aligned_cols=29 Identities=28% Similarity=0.558 Sum_probs=19.6
Q ss_pred hHHHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 71 VEPVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 71 V~PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
+..++...+.+ .+.|+..|.||||||.+|
T Consensus 116 ~~~~l~~~v~~-~~~ili~G~tGSGKTT~l 144 (270)
T PF00437_consen 116 IAEFLRSAVRG-RGNILISGPTGSGKTTLL 144 (270)
T ss_dssp HHHHHHHCHHT-TEEEEEEESTTSSHHHHH
T ss_pred HHHHHhhcccc-ceEEEEECCCccccchHH
Confidence 34444444433 456677799999999986
No 86
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=67.45 E-value=3.8 Score=43.28 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=18.4
Q ss_pred HHhhcCCCeeEEEeccCCCCcceec
Q 002847 76 KSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 76 ~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
...+....+.++-+|++|+|||+.+
T Consensus 36 ~~~~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 36 EYGLSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred HHHHhcCCCEEEEEcCCCCCHHHHH
Confidence 3334444667888999999999764
No 87
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=67.08 E-value=4.2 Score=45.85 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=19.2
Q ss_pred HHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 74 VIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 74 lV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
+-..+..+.---.+-||+.|+|||.|.
T Consensus 48 L~~a~~~~~lp~~LFyGPpGTGKTSta 74 (346)
T KOG0989|consen 48 LKNALLRRILPHYLFYGPPGTGKTSTA 74 (346)
T ss_pred HHHHHhhcCCceEEeeCCCCCcHhHHH
Confidence 333334434455788999999999996
No 88
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=66.95 E-value=3.3 Score=45.03 Aligned_cols=29 Identities=28% Similarity=0.509 Sum_probs=22.5
Q ss_pred HHHHHhhcCCCeeEEEeccCCCCcceecc
Q 002847 73 PVIKSVLDGYNACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 73 PlV~svLdGyN~TIfAYGQTGSGKTyTM~ 101 (874)
..+..++..-.+.|+-.|+||||||.||.
T Consensus 70 ~~l~~~~~~~~GlilisG~tGSGKTT~l~ 98 (264)
T cd01129 70 EIFRKLLEKPHGIILVTGPTGSGKTTTLY 98 (264)
T ss_pred HHHHHHHhcCCCEEEEECCCCCcHHHHHH
Confidence 34566666666778889999999999974
No 89
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=65.74 E-value=3.2 Score=41.80 Aligned_cols=28 Identities=32% Similarity=0.477 Sum_probs=17.6
Q ss_pred HHHHhhcCCCeeEEEeccCCCCcceeccC
Q 002847 74 VIKSVLDGYNACIFAYGQTGTGKSFTMEG 102 (874)
Q Consensus 74 lV~svLdGyN~TIfAYGQTGSGKTyTM~G 102 (874)
.|..++..-. ..+..|+.|||||+|+..
T Consensus 9 Ai~~~~~~~~-~~~i~GpPGTGKT~~l~~ 36 (236)
T PF13086_consen 9 AIQSALSSNG-ITLIQGPPGTGKTTTLAS 36 (236)
T ss_dssp HHHHHCTSSE--EEEE-STTSSHHHHHHH
T ss_pred HHHHHHcCCC-CEEEECCCCCChHHHHHH
Confidence 3455554333 456689999999988653
No 90
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=64.79 E-value=4.7 Score=44.87 Aligned_cols=30 Identities=33% Similarity=0.434 Sum_probs=25.2
Q ss_pred HHHHHHhhcCCCeeEEEeccCCCCcceecc
Q 002847 72 EPVIKSVLDGYNACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 72 ~PlV~svLdGyN~TIfAYGQTGSGKTyTM~ 101 (874)
-++++.+.--.-+.|+..|+|||||+.||-
T Consensus 116 Pevlk~la~~kRGLviiVGaTGSGKSTtmA 145 (375)
T COG5008 116 PEVLKDLALAKRGLVIIVGATGSGKSTTMA 145 (375)
T ss_pred cHHHHHhhcccCceEEEECCCCCCchhhHH
Confidence 467777777777889999999999999973
No 91
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=63.48 E-value=5.1 Score=43.46 Aligned_cols=39 Identities=21% Similarity=0.279 Sum_probs=26.3
Q ss_pred CChHHHHHhhHHHHHHhhc--CCCeeEEEeccCCCCcceec
Q 002847 62 SSQDEVFSEVEPVIKSVLD--GYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 62 asQeeVF~~V~PlV~svLd--GyN~TIfAYGQTGSGKTyTM 100 (874)
..|+++.+.+..++..... +....++-||++|+|||+..
T Consensus 7 iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 7 IGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLA 47 (305)
T ss_pred cCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 4577777776666654432 22234777999999999765
No 92
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=62.88 E-value=5.2 Score=41.00 Aligned_cols=19 Identities=32% Similarity=0.562 Sum_probs=15.6
Q ss_pred eeEEEeccCCCCcceeccC
Q 002847 84 ACIFAYGQTGTGKSFTMEG 102 (874)
Q Consensus 84 ~TIfAYGQTGSGKTyTM~G 102 (874)
-.++-+|++|+||||...+
T Consensus 48 ~~l~l~G~~G~GKThLa~a 66 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVA 66 (178)
T ss_dssp -EEEEEESTTSSHHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHH
Confidence 4589999999999998654
No 93
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=62.38 E-value=22 Score=38.72 Aligned_cols=54 Identities=28% Similarity=0.447 Sum_probs=46.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHhh
Q 002847 342 EARDQKEVSMKNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQEQLEV 395 (874)
Q Consensus 342 ~~~~~k~~~~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~lqeql~~ 395 (874)
.++|.|...+.+++.+|+.|.+|.+.|+.|.+.|+..-+.|-.+...+...|+.
T Consensus 83 taRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~ 136 (292)
T KOG4005|consen 83 TARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELEL 136 (292)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 357888888999999999999999999999999999888887777777666654
No 94
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=62.24 E-value=2.9 Score=38.65 Aligned_cols=15 Identities=40% Similarity=0.563 Sum_probs=13.0
Q ss_pred EEEeccCCCCcceec
Q 002847 86 IFAYGQTGTGKSFTM 100 (874)
Q Consensus 86 IfAYGQTGSGKTyTM 100 (874)
|+-||+.|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 678999999999864
No 95
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=61.97 E-value=5.1 Score=44.46 Aligned_cols=28 Identities=25% Similarity=0.401 Sum_probs=21.0
Q ss_pred HHHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 72 EPVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 72 ~PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
..++..++.+ ...|+..|.||||||.+|
T Consensus 122 ~~~L~~~v~~-~~~ilI~G~tGSGKTTll 149 (299)
T TIGR02782 122 RDVLREAVLA-RKNILVVGGTGSGKTTLA 149 (299)
T ss_pred HHHHHHHHHc-CCeEEEECCCCCCHHHHH
Confidence 4556666654 456788999999999986
No 96
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=61.89 E-value=7.1 Score=49.03 Aligned_cols=25 Identities=36% Similarity=0.492 Sum_probs=21.4
Q ss_pred HHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 74 VIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 74 lV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
.+..+.+|.|+.|.| +||||||-+-
T Consensus 30 a~~~i~~G~nvLiiA--PTGsGKTeAA 54 (814)
T COG1201 30 AIPEIHSGENVLIIA--PTGSGKTEAA 54 (814)
T ss_pred HHHHHhCCCceEEEc--CCCCChHHHH
Confidence 567778999998887 9999999873
No 97
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=60.82 E-value=5.9 Score=44.91 Aligned_cols=37 Identities=35% Similarity=0.516 Sum_probs=26.4
Q ss_pred CCChHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 61 GSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 61 ~asQeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
+..|+.+|+.|-..+.. .....+|.-|+.||||||.+
T Consensus 3 n~eQ~~~~~~v~~~~~~---~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 3 NEEQRRVFDTVIEAIEN---EEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred CHHHHHHHHHHHHHHHc---cCCcEEEEEcCCCCChhHHH
Confidence 34688999886433332 34456788999999999975
No 98
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=60.38 E-value=17 Score=39.38 Aligned_cols=54 Identities=20% Similarity=0.225 Sum_probs=34.3
Q ss_pred EeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEecCCccccccceeEEEeccCcccc
Q 002847 180 QVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPERRREKNKIWLVDLGGSERV 246 (874)
Q Consensus 180 ~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~d~~e~~~~~SkL~LVDLAGSER~ 246 (874)
.+.+++++..++...... ..+. + ..-|.-+++|.|...+ .-.|.||||+|-.+.
T Consensus 85 ~~~~~~~v~~~i~~~~~~-~~~~---~--~~~s~~~i~l~i~~p~-------~~~ltLIDlPGl~~~ 138 (240)
T smart00053 85 KFTDFDEVRNEIEAETDR-VTGT---N--KGISPVPINLRVYSPH-------VLNLTLIDLPGITKV 138 (240)
T ss_pred ccCCHHHHHHHHHHHHHH-hcCC---C--CcccCcceEEEEeCCC-------CCceEEEeCCCcccc
Confidence 346788888888765432 1111 1 2345567888886543 247899999998643
No 99
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=59.77 E-value=3.9 Score=43.42 Aligned_cols=21 Identities=19% Similarity=0.320 Sum_probs=16.3
Q ss_pred CCCeeEEEeccCCCCcceecc
Q 002847 81 GYNACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 81 GyN~TIfAYGQTGSGKTyTM~ 101 (874)
-.++.++..|..|||||+||.
T Consensus 11 ~~~~~~lV~a~AGSGKT~~l~ 31 (315)
T PF00580_consen 11 STEGPLLVNAGAGSGKTTTLL 31 (315)
T ss_dssp S-SSEEEEEE-TTSSHHHHHH
T ss_pred CCCCCEEEEeCCCCCchHHHH
Confidence 377888889999999999963
No 100
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=59.12 E-value=4.8 Score=39.85 Aligned_cols=25 Identities=36% Similarity=0.490 Sum_probs=18.6
Q ss_pred EEEeccCCCCcceeccCCCCCCCcHHHHHHHHHHH
Q 002847 86 IFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQ 120 (874)
Q Consensus 86 IfAYGQTGSGKTyTM~Gs~e~~GIIPRaledLF~~ 120 (874)
+--.|.||+||||+- ..+.+.||..
T Consensus 56 lSfHG~tGtGKn~v~----------~liA~~ly~~ 80 (127)
T PF06309_consen 56 LSFHGWTGTGKNFVS----------RLIAEHLYKS 80 (127)
T ss_pred EEeecCCCCcHHHHH----------HHHHHHHHhc
Confidence 445799999999963 4566777864
No 101
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=58.97 E-value=11 Score=41.02 Aligned_cols=42 Identities=19% Similarity=0.309 Sum_probs=29.3
Q ss_pred eCCCCChHHHHHhhHHHHHHhhc-C-CCeeEEEeccCCCCccee
Q 002847 58 FHPGSSQDEVFSEVEPVIKSVLD-G-YNACIFAYGQTGTGKSFT 99 (874)
Q Consensus 58 F~~~asQeeVF~~V~PlV~svLd-G-yN~TIfAYGQTGSGKTyT 99 (874)
|++-..|+++-...+.+++.+.. | .-..++-||++|.|||..
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTL 66 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHH
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHH
Confidence 44456789999888888888764 2 334688999999999853
No 102
>PF13479 AAA_24: AAA domain
Probab=58.32 E-value=4.5 Score=42.24 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=16.6
Q ss_pred CeeEEEeccCCCCcceeccC
Q 002847 83 NACIFAYGQTGTGKSFTMEG 102 (874)
Q Consensus 83 N~TIfAYGQTGSGKTyTM~G 102 (874)
+..++.||++|+|||++...
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~ 22 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAAS 22 (213)
T ss_pred ceEEEEECCCCCCHHHHHHh
Confidence 45689999999999987643
No 103
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=58.14 E-value=18 Score=39.59 Aligned_cols=46 Identities=17% Similarity=0.282 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHhh
Q 002847 350 SMKNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQEQLEV 395 (874)
Q Consensus 350 ~~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~lqeql~~ 395 (874)
...+|++++..|+.|+.+||++||++..+|+++.+....+..+|+.
T Consensus 55 ~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 55 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999999999999999999998877777777764
No 104
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=57.99 E-value=6.8 Score=37.66 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=18.1
Q ss_pred HHHhhcCCCeeEEEeccCCCCcceeccC
Q 002847 75 IKSVLDGYNACIFAYGQTGTGKSFTMEG 102 (874)
Q Consensus 75 V~svLdGyN~TIfAYGQTGSGKTyTM~G 102 (874)
+..++++. ..++..|++|||||.++..
T Consensus 17 ~~~~~~~~-~~~~i~~~~GsGKT~~~~~ 43 (201)
T smart00487 17 IEALLSGL-RDVILAAPTGSGKTLAALL 43 (201)
T ss_pred HHHHHcCC-CcEEEECCCCCchhHHHHH
Confidence 34444442 3457778999999998653
No 105
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=57.97 E-value=3.9 Score=42.58 Aligned_cols=17 Identities=41% Similarity=0.569 Sum_probs=14.6
Q ss_pred eEEEeccCCCCcceecc
Q 002847 85 CIFAYGQTGTGKSFTME 101 (874)
Q Consensus 85 TIfAYGQTGSGKTyTM~ 101 (874)
.|+-.|+||+|||.|+.
T Consensus 3 vi~lvGptGvGKTTt~a 19 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIA 19 (196)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCchHhHHH
Confidence 47788999999999963
No 106
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=57.40 E-value=6 Score=45.14 Aligned_cols=73 Identities=21% Similarity=0.262 Sum_probs=46.2
Q ss_pred HHHHHHhhcCCCeeEEEeccCCCCcceecc---C--CCCC----------------------------CCcHHHHHHHHH
Q 002847 72 EPVIKSVLDGYNACIFAYGQTGTGKSFTME---G--TPDS----------------------------PGIVPRAIEAIF 118 (874)
Q Consensus 72 ~PlV~svLdGyN~TIfAYGQTGSGKTyTM~---G--s~e~----------------------------~GIIPRaledLF 118 (874)
..++..++++. +.|+..|.||||||.++- | ++.+ .|--.-.+.+|.
T Consensus 163 a~~L~~av~~r-~NILisGGTGSGKTTlLNal~~~i~~~eRvItiEDtaELql~~ph~vrL~TR~~n~Eg~gevtm~dLv 241 (355)
T COG4962 163 AKFLRRAVGIR-CNILISGGTGSGKTTLLNALSGFIDSDERVITIEDTAELQLAHPHVVRLETRPPNVEGTGEVTMRDLV 241 (355)
T ss_pred HHHHHHHHhhc-eeEEEeCCCCCCHHHHHHHHHhcCCCcccEEEEeehhhhccCCCceEEEeecCCCCCCcceEEHHHHH
Confidence 45566666666 778999999999999872 2 1111 133334677777
Q ss_pred HHHHhcCCeeEEEEEEEEEecceeecccCC
Q 002847 119 KQAMESNHAFRISFSMLEIYLGSLKDLLVT 148 (874)
Q Consensus 119 ~~i~e~~~~f~VsVS~lEIYNEkV~DLL~~ 148 (874)
+......-+ ++=+-|++....+|||..
T Consensus 242 kn~LRmRPD---RIiVGEVRG~Ea~dLL~A 268 (355)
T COG4962 242 KNALRMRPD---RIIVGEVRGVEALDLLQA 268 (355)
T ss_pred HHHhhcCcc---ceEEEEecCccHHHHHHH
Confidence 655332221 123569999999999954
No 107
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=56.78 E-value=6.4 Score=44.21 Aligned_cols=28 Identities=25% Similarity=0.376 Sum_probs=20.1
Q ss_pred HHHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 72 EPVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 72 ~PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
..++..++.+. ..|+..|.||||||++|
T Consensus 138 ~~~L~~~v~~~-~~ilI~G~tGSGKTTll 165 (319)
T PRK13894 138 REAIIAAVRAH-RNILVIGGTGSGKTTLV 165 (319)
T ss_pred HHHHHHHHHcC-CeEEEECCCCCCHHHHH
Confidence 35566666653 55677799999999765
No 108
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=56.15 E-value=11 Score=40.44 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=15.0
Q ss_pred CeeEEEeccCCCCcceec
Q 002847 83 NACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 83 N~TIfAYGQTGSGKTyTM 100 (874)
...++-||++|+|||++.
T Consensus 42 ~~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVA 59 (261)
T ss_pred cceEEEEcCCCCCHHHHH
Confidence 355788999999999874
No 109
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=56.13 E-value=7.8 Score=39.47 Aligned_cols=29 Identities=21% Similarity=0.326 Sum_probs=20.4
Q ss_pred hHHHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 71 VEPVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 71 V~PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
+.+++..++.. ...+.-.|++|||||.+|
T Consensus 14 ~~~~l~~~v~~-g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 14 QAAYLWLAVEA-RKNILISGGTGSGKTTLL 42 (186)
T ss_pred HHHHHHHHHhC-CCEEEEECCCCCCHHHHH
Confidence 34555555554 345677899999999876
No 110
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=55.71 E-value=5.3 Score=36.93 Aligned_cols=16 Identities=38% Similarity=0.515 Sum_probs=13.6
Q ss_pred eEEEeccCCCCcceec
Q 002847 85 CIFAYGQTGTGKSFTM 100 (874)
Q Consensus 85 TIfAYGQTGSGKTyTM 100 (874)
.|+-.|++|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4788999999999863
No 111
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=55.24 E-value=11 Score=43.56 Aligned_cols=18 Identities=33% Similarity=0.547 Sum_probs=16.0
Q ss_pred CeeEEEeccCCCCcceec
Q 002847 83 NACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 83 N~TIfAYGQTGSGKTyTM 100 (874)
...|+.+|+||+|||.|+
T Consensus 174 ~~vi~lvGptGvGKTTT~ 191 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTI 191 (388)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 467889999999999996
No 112
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=54.96 E-value=11 Score=41.23 Aligned_cols=18 Identities=39% Similarity=0.523 Sum_probs=14.8
Q ss_pred eEEEeccCCCCcceeccC
Q 002847 85 CIFAYGQTGTGKSFTMEG 102 (874)
Q Consensus 85 TIfAYGQTGSGKTyTM~G 102 (874)
.|.-.|+||+|||+|+..
T Consensus 196 vi~~vGptGvGKTTt~~k 213 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAK 213 (282)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 566779999999999753
No 113
>PRK04195 replication factor C large subunit; Provisional
Probab=54.90 E-value=10 Score=44.67 Aligned_cols=37 Identities=24% Similarity=0.434 Sum_probs=26.5
Q ss_pred hHHHHHhhHHHHHHhhcCC-CeeEEEeccCCCCcceec
Q 002847 64 QDEVFSEVEPVIKSVLDGY-NACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 64 QeeVF~~V~PlV~svLdGy-N~TIfAYGQTGSGKTyTM 100 (874)
|+++-..+..++.....|. ...++-||++|+|||++.
T Consensus 19 ~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 19 NEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 3444445566666666665 567889999999999875
No 114
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=54.39 E-value=26 Score=38.35 Aligned_cols=48 Identities=19% Similarity=0.290 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHhhcc
Q 002847 350 SMKNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQEQLEVSH 397 (874)
Q Consensus 350 ~~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~lqeql~~~~ 397 (874)
....++++..+||+|+..+.+++..|+.+++.|+..+..|.|.+.-.+
T Consensus 87 QRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 87 QRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356788999999999999999999999999999999999999876543
No 115
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=54.25 E-value=35 Score=29.28 Aligned_cols=41 Identities=24% Similarity=0.533 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 002847 344 RDQKEVSMKNLQQKMKKIEEERLRVRGEIENLSEKLEALTR 384 (874)
Q Consensus 344 ~~~k~~~~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~ 384 (874)
+..+...+..|+.++..|+.++..|+.++..|+..+..|..
T Consensus 21 R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 21 RQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566777777777777777777777777777666543
No 116
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=54.20 E-value=7.5 Score=43.90 Aligned_cols=27 Identities=37% Similarity=0.502 Sum_probs=19.5
Q ss_pred HHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 73 PVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 73 PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
.++..++.+. ..|+..|.||||||.+|
T Consensus 135 ~~L~~~v~~~-~nilI~G~tGSGKTTll 161 (323)
T PRK13833 135 SVIRSAIDSR-LNIVISGGTGSGKTTLA 161 (323)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHH
Confidence 4555555432 34788899999999987
No 117
>PRK13342 recombination factor protein RarA; Reviewed
Probab=53.74 E-value=7.4 Score=44.80 Aligned_cols=38 Identities=21% Similarity=0.424 Sum_probs=24.1
Q ss_pred ChHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 63 SQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 63 sQeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
.|+.+.....++...+-.+.-..++-||++|+|||+..
T Consensus 16 Gq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA 53 (413)
T PRK13342 16 GQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLA 53 (413)
T ss_pred CcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHH
Confidence 45555544233333334555557777999999999765
No 118
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=52.61 E-value=66 Score=27.97 Aligned_cols=42 Identities=21% Similarity=0.343 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH
Q 002847 351 MKNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQEQ 392 (874)
Q Consensus 351 ~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~lqeq 392 (874)
...+++++..++.++..++.+++.|+.+++.++.....+++.
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~ 60 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKV 60 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 456667777788888888888888888888875555444443
No 119
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=52.43 E-value=7.9 Score=43.69 Aligned_cols=29 Identities=21% Similarity=0.249 Sum_probs=20.7
Q ss_pred hHHHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 71 VEPVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 71 V~PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
+..++..++.+. ..|+..|.||||||.+|
T Consensus 149 ~~~~L~~~v~~~-~nili~G~tgSGKTTll 177 (332)
T PRK13900 149 IKEFLEHAVISK-KNIIISGGTSTGKTTFT 177 (332)
T ss_pred HHHHHHHHHHcC-CcEEEECCCCCCHHHHH
Confidence 455566555443 34778899999999986
No 120
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=52.42 E-value=6 Score=37.51 Aligned_cols=14 Identities=43% Similarity=0.629 Sum_probs=12.7
Q ss_pred EEEeccCCCCccee
Q 002847 86 IFAYGQTGTGKSFT 99 (874)
Q Consensus 86 IfAYGQTGSGKTyT 99 (874)
|+.+|.+|||||+.
T Consensus 2 ii~~G~pgsGKSt~ 15 (143)
T PF13671_consen 2 IILCGPPGSGKSTL 15 (143)
T ss_dssp EEEEESTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 78899999999985
No 121
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=52.32 E-value=9.4 Score=45.76 Aligned_cols=31 Identities=26% Similarity=0.499 Sum_probs=24.5
Q ss_pred hhHHHHHHhhcCCC--eeEEEeccCCCCcceec
Q 002847 70 EVEPVIKSVLDGYN--ACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 70 ~V~PlV~svLdGyN--~TIfAYGQTGSGKTyTM 100 (874)
+|+..++..+.|.. ..++.+|++|+|||.|+
T Consensus 30 eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 30 EVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHHHHhccCCCcceEEEECCCCCCHHHHH
Confidence 36777887776653 56788999999999986
No 122
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=52.31 E-value=14 Score=46.26 Aligned_cols=36 Identities=28% Similarity=0.419 Sum_probs=28.9
Q ss_pred HHHHh--hHHHHHHhhcCCCeeEEEeccCCCCcceeccC
Q 002847 66 EVFSE--VEPVIKSVLDGYNACIFAYGQTGTGKSFTMEG 102 (874)
Q Consensus 66 eVF~~--V~PlV~svLdGyN~TIfAYGQTGSGKTyTM~G 102 (874)
.-|+. |..+++++-+|.+-.+++. .||||||+|-+-
T Consensus 167 RyyQ~~AI~rv~Eaf~~g~~raLlvM-ATGTGKTrTAia 204 (875)
T COG4096 167 RYYQIIAIRRVIEAFSKGQNRALLVM-ATGTGKTRTAIA 204 (875)
T ss_pred hHHHHHHHHHHHHHHhcCCceEEEEE-ecCCCcceeHHH
Confidence 34553 6788999999999976665 799999999764
No 123
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=52.30 E-value=9.5 Score=38.46 Aligned_cols=24 Identities=33% Similarity=0.605 Sum_probs=18.5
Q ss_pred HHHHhhcCCCeeEEEeccCCCCccee
Q 002847 74 VIKSVLDGYNACIFAYGQTGTGKSFT 99 (874)
Q Consensus 74 lV~svLdGyN~TIfAYGQTGSGKTyT 99 (874)
.++.++.|.| ++..++||+|||.+
T Consensus 29 ~~~~~~~~~~--~li~~~TG~GKT~~ 52 (203)
T cd00268 29 AIPPLLSGRD--VIGQAQTGSGKTAA 52 (203)
T ss_pred HHHHHhcCCc--EEEECCCCCcHHHH
Confidence 4455566877 57788999999987
No 124
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=52.11 E-value=21 Score=44.06 Aligned_cols=87 Identities=22% Similarity=0.421 Sum_probs=51.3
Q ss_pred eEeceeeCCCCChHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCcceeccCCC---CCCCcH----HHHHHHHHHHHHh-
Q 002847 52 YSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTP---DSPGIV----PRAIEAIFKQAME- 123 (874)
Q Consensus 52 F~FD~VF~~~asQeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM~Gs~---e~~GII----PRaledLF~~i~e- 123 (874)
|....=|.|.-.|..-+.. +++.+-+|...- ..+|.||||||+||..-- ..|-|| ...+..|+..+..
T Consensus 2 f~~~~~~~~~~~Q~~ai~~---l~~~~~~~~~~~-~l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~~f 77 (655)
T TIGR00631 2 FKLHSPFQPAGDQPKAIAK---LVEGLTDGEKHQ-TLLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFKEF 77 (655)
T ss_pred ceeccCCCCChHHHHHHHH---HHHhhhcCCCcE-EEECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHh
Confidence 3444457777788776654 445555564222 378999999999986521 111111 1233445444422
Q ss_pred -cCCeeEEEEEEEEEeccee
Q 002847 124 -SNHAFRISFSMLEIYLGSL 142 (874)
Q Consensus 124 -~~~~f~VsVS~lEIYNEkV 142 (874)
....+...|||+..|.-..
T Consensus 78 ~p~~~V~~f~sy~d~y~pe~ 97 (655)
T TIGR00631 78 FPENAVEYFVSYYDYYQPEA 97 (655)
T ss_pred CCCCeEEEEeeecccCCccc
Confidence 2445888899999996543
No 125
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=51.62 E-value=9 Score=44.37 Aligned_cols=25 Identities=28% Similarity=0.569 Sum_probs=20.0
Q ss_pred HHHHHhhcCCCeeEEEeccCCCCccee
Q 002847 73 PVIKSVLDGYNACIFAYGQTGTGKSFT 99 (874)
Q Consensus 73 PlV~svLdGyN~TIfAYGQTGSGKTyT 99 (874)
..+..+++|.| +++.++||||||.+
T Consensus 33 ~ai~~~l~g~d--vi~~a~TGsGKT~a 57 (460)
T PRK11776 33 QSLPAILAGKD--VIAQAKTGSGKTAA 57 (460)
T ss_pred HHHHHHhcCCC--EEEECCCCCcHHHH
Confidence 35566788988 67788999999965
No 126
>PTZ00424 helicase 45; Provisional
Probab=51.47 E-value=8.5 Score=43.21 Aligned_cols=26 Identities=46% Similarity=0.758 Sum_probs=20.7
Q ss_pred HHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 73 PVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 73 PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
..+..+++|.|. +..++||||||.+.
T Consensus 57 ~ai~~i~~~~d~--ii~apTGsGKT~~~ 82 (401)
T PTZ00424 57 RGIKPILDGYDT--IGQAQSGTGKTATF 82 (401)
T ss_pred HHHHHHhCCCCE--EEECCCCChHHHHH
Confidence 466778899985 46789999999764
No 127
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=50.64 E-value=9.5 Score=41.59 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=16.7
Q ss_pred cCC-CeeEEEeccCCCCcceecc
Q 002847 80 DGY-NACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 80 dGy-N~TIfAYGQTGSGKTyTM~ 101 (874)
.|. ...++-||++|+|||+.+.
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la~ 61 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVAK 61 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHHH
Confidence 454 4566679999999999863
No 128
>PLN03025 replication factor C subunit; Provisional
Probab=50.61 E-value=9.7 Score=42.16 Aligned_cols=35 Identities=23% Similarity=0.462 Sum_probs=21.8
Q ss_pred hHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCcceecc
Q 002847 64 QDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 64 QeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM~ 101 (874)
|+++...++.++. .|.-..++-||++|+|||++..
T Consensus 18 ~~~~~~~L~~~~~---~~~~~~lll~Gp~G~GKTtla~ 52 (319)
T PLN03025 18 NEDAVSRLQVIAR---DGNMPNLILSGPPGTGKTTSIL 52 (319)
T ss_pred cHHHHHHHHHHHh---cCCCceEEEECCCCCCHHHHHH
Confidence 4455444443332 3333346779999999999864
No 129
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=50.16 E-value=10 Score=46.56 Aligned_cols=36 Identities=25% Similarity=0.441 Sum_probs=27.5
Q ss_pred HHHHHhhHHHHHHhh-cCCCeeEEEeccCCCCcceec
Q 002847 65 DEVFSEVEPVIKSVL-DGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 65 eeVF~~V~PlV~svL-dGyN~TIfAYGQTGSGKTyTM 100 (874)
-.||.-.......++ .+.|-||+..|.+|||||.+.
T Consensus 66 PHif~~a~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 66 PHIFAVAQRAYRQMLRTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp SSHHHHHHHHHHHHHHHTSEEEEEEEESTTSSHHHHH
T ss_pred Cccchhhhcccccccccccccceeeccccccccccch
Confidence 446765544444443 689999999999999999985
No 130
>smart00338 BRLZ basic region leucin zipper.
Probab=49.98 E-value=49 Score=28.42 Aligned_cols=41 Identities=34% Similarity=0.622 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 002847 344 RDQKEVSMKNLQQKMKKIEEERLRVRGEIENLSEKLEALTR 384 (874)
Q Consensus 344 ~~~k~~~~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~ 384 (874)
+..+...+..|+.++..|+.++..|+.++..|..++..+..
T Consensus 21 R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 21 RERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455666666666666666666666666666555443
No 131
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=49.98 E-value=12 Score=46.08 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=22.9
Q ss_pred hhHHHHHHhhc-----CCCeeEEEeccCCCCcceeccC
Q 002847 70 EVEPVIKSVLD-----GYNACIFAYGQTGTGKSFTMEG 102 (874)
Q Consensus 70 ~V~PlV~svLd-----GyN~TIfAYGQTGSGKTyTM~G 102 (874)
.|..+++.+.. |.+..|+.. +||||||+||..
T Consensus 246 av~~~~~~~~~~~~~~~~~~gli~~-~TGsGKT~t~~~ 282 (667)
T TIGR00348 246 AVKKIVESITRKTWGKDERGGLIWH-TQGSGKTLTMLF 282 (667)
T ss_pred HHHHHHHHHHhcccCCCCceeEEEE-ecCCCccHHHHH
Confidence 36777777766 345555544 899999999964
No 132
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=49.87 E-value=5.8 Score=40.60 Aligned_cols=17 Identities=35% Similarity=0.573 Sum_probs=12.9
Q ss_pred eEEEeccCCCCcceecc
Q 002847 85 CIFAYGQTGTGKSFTME 101 (874)
Q Consensus 85 TIfAYGQTGSGKTyTM~ 101 (874)
-++.+|+||||||.++.
T Consensus 40 h~li~G~tgsGKS~~l~ 56 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLR 56 (205)
T ss_dssp SEEEE--TTSSHHHHHH
T ss_pred eEEEEcCCCCCccHHHH
Confidence 57899999999999864
No 133
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=49.34 E-value=11 Score=47.15 Aligned_cols=35 Identities=37% Similarity=0.741 Sum_probs=24.4
Q ss_pred CeeEEEeccCCCCcceec--------cCCC--CCCCcH----HHHHHHH
Q 002847 83 NACIFAYGQTGTGKSFTM--------EGTP--DSPGIV----PRAIEAI 117 (874)
Q Consensus 83 N~TIfAYGQTGSGKTyTM--------~Gs~--e~~GII----PRaledL 117 (874)
|-.|+.+|+||||||.-+ ||.+ .++|+| ||=+..|
T Consensus 271 n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAai 319 (1172)
T KOG0926|consen 271 NPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAI 319 (1172)
T ss_pred CCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHH
Confidence 566788899999999887 4444 347776 5544444
No 134
>PRK06547 hypothetical protein; Provisional
Probab=49.23 E-value=14 Score=37.79 Aligned_cols=29 Identities=17% Similarity=0.291 Sum_probs=20.3
Q ss_pred HHHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 72 EPVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 72 ~PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
+.++..+..+.---|..+|.+|||||+.-
T Consensus 4 ~~~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 4 ALIAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 34455555555566777799999999863
No 135
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=48.81 E-value=11 Score=41.69 Aligned_cols=40 Identities=20% Similarity=0.298 Sum_probs=25.8
Q ss_pred CChHHHHHhhHHHHHHhhc--CCCeeEEEeccCCCCcceecc
Q 002847 62 SSQDEVFSEVEPVIKSVLD--GYNACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 62 asQeeVF~~V~PlV~svLd--GyN~TIfAYGQTGSGKTyTM~ 101 (874)
..|+++-..+..++..... +....++-||++|+|||+...
T Consensus 28 vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 28 IGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred cCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHH
Confidence 3456665555555554432 223467889999999999764
No 136
>PHA02653 RNA helicase NPH-II; Provisional
Probab=48.68 E-value=20 Score=44.40 Aligned_cols=33 Identities=24% Similarity=0.316 Sum_probs=21.8
Q ss_pred CChHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCccee
Q 002847 62 SSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFT 99 (874)
Q Consensus 62 asQeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyT 99 (874)
+-|.++-+. ++..+++|.+ |++.|+||||||..
T Consensus 163 ~~~~~iQ~q---il~~i~~gkd--vIv~A~TGSGKTtq 195 (675)
T PHA02653 163 SLQPDVQLK---IFEAWISRKP--VVLTGGTGVGKTSQ 195 (675)
T ss_pred chhHHHHHH---HHHHHHhCCC--EEEECCCCCCchhH
Confidence 345444433 4455566765 58999999999954
No 137
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=48.53 E-value=11 Score=40.01 Aligned_cols=18 Identities=39% Similarity=0.676 Sum_probs=13.1
Q ss_pred CCeeEEEeccCCCCccee
Q 002847 82 YNACIFAYGQTGTGKSFT 99 (874)
Q Consensus 82 yN~TIfAYGQTGSGKTyT 99 (874)
.+-.+++.|+.|||||+.
T Consensus 18 ~~~~v~~~G~AGTGKT~L 35 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFL 35 (205)
T ss_dssp H-SEEEEE--TTSSTTHH
T ss_pred hCCeEEEECCCCCcHHHH
Confidence 455789999999999986
No 138
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=48.27 E-value=30 Score=42.93 Aligned_cols=49 Identities=27% Similarity=0.599 Sum_probs=34.7
Q ss_pred HHHHHhhHHHHHHhh--cCCCeeEEEeccCCCCcceeccCCCCCCCcHHHHHHHHHHHHHh
Q 002847 65 DEVFSEVEPVIKSVL--DGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAME 123 (874)
Q Consensus 65 eeVF~~V~PlV~svL--dGyN~TIfAYGQTGSGKTyTM~Gs~e~~GIIPRaledLF~~i~e 123 (874)
+.-|..|...++.++ +|-.+|+..-|..|||||+|+. .++..|-....+
T Consensus 402 e~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~----------~Vm~~Lq~~s~~ 452 (767)
T KOG1514|consen 402 ENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVL----------EVMKELQTSSAQ 452 (767)
T ss_pred hHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHH----------HHHHHHHHHHhh
Confidence 344555555666665 4777799999999999999974 467777655443
No 139
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=48.22 E-value=11 Score=43.28 Aligned_cols=25 Identities=36% Similarity=0.593 Sum_probs=20.5
Q ss_pred HHHHHhhcCCCeeEEEeccCCCCccee
Q 002847 73 PVIKSVLDGYNACIFAYGQTGTGKSFT 99 (874)
Q Consensus 73 PlV~svLdGyN~TIfAYGQTGSGKTyT 99 (874)
..|..+++|.| +++.++||||||.+
T Consensus 30 ~ai~~~~~g~d--~l~~apTGsGKT~~ 54 (434)
T PRK11192 30 EAIPPALDGRD--VLGSAPTGTGKTAA 54 (434)
T ss_pred HHHHHHhCCCC--EEEECCCCChHHHH
Confidence 35667788887 78889999999986
No 140
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=48.11 E-value=7.4 Score=44.26 Aligned_cols=30 Identities=23% Similarity=0.473 Sum_probs=20.8
Q ss_pred hHHHHHHhhcCCCeeEEEeccCCCCcceecc
Q 002847 71 VEPVIKSVLDGYNACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 71 V~PlV~svLdGyN~TIfAYGQTGSGKTyTM~ 101 (874)
+..++..++.+ ...|+..|+||||||.+|-
T Consensus 151 ~~~~l~~~v~~-~~nilI~G~tGSGKTTll~ 180 (344)
T PRK13851 151 LEAFLHACVVG-RLTMLLCGPTGSGKTTMSK 180 (344)
T ss_pred HHHHHHHHHHc-CCeEEEECCCCccHHHHHH
Confidence 44555555542 3447888999999999873
No 141
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=48.03 E-value=12 Score=48.82 Aligned_cols=31 Identities=32% Similarity=0.480 Sum_probs=22.2
Q ss_pred hHHHHHHhhcCCCeeEEEeccCCCCcceeccC
Q 002847 71 VEPVIKSVLDGYNACIFAYGQTGTGKSFTMEG 102 (874)
Q Consensus 71 V~PlV~svLdGyN~TIfAYGQTGSGKTyTM~G 102 (874)
|..+++.+-+|....++. .+||||||+||.+
T Consensus 422 I~ai~~a~~~g~r~~Ll~-maTGSGKT~tai~ 452 (1123)
T PRK11448 422 IQAVEKAIVEGQREILLA-MATGTGKTRTAIA 452 (1123)
T ss_pred HHHHHHHHHhccCCeEEE-eCCCCCHHHHHHH
Confidence 445556666677655444 8999999999875
No 142
>PRK09183 transposase/IS protein; Provisional
Probab=47.79 E-value=11 Score=41.02 Aligned_cols=21 Identities=29% Similarity=0.408 Sum_probs=16.2
Q ss_pred cCCCeeEEEeccCCCCcceeccC
Q 002847 80 DGYNACIFAYGQTGTGKSFTMEG 102 (874)
Q Consensus 80 dGyN~TIfAYGQTGSGKTyTM~G 102 (874)
.|.| |+-+|++|+||||.+.+
T Consensus 101 ~~~~--v~l~Gp~GtGKThLa~a 121 (259)
T PRK09183 101 RNEN--IVLLGPSGVGKTHLAIA 121 (259)
T ss_pred cCCe--EEEEeCCCCCHHHHHHH
Confidence 4554 56799999999998643
No 143
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=47.40 E-value=8 Score=35.51 Aligned_cols=15 Identities=33% Similarity=0.375 Sum_probs=12.8
Q ss_pred EEEeccCCCCcceec
Q 002847 86 IFAYGQTGTGKSFTM 100 (874)
Q Consensus 86 IfAYGQTGSGKTyTM 100 (874)
|+-.|.+|||||+..
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 678899999999864
No 144
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=47.17 E-value=7.1 Score=37.24 Aligned_cols=15 Identities=33% Similarity=0.567 Sum_probs=13.1
Q ss_pred EEEeccCCCCcceec
Q 002847 86 IFAYGQTGTGKSFTM 100 (874)
Q Consensus 86 IfAYGQTGSGKTyTM 100 (874)
|+-+|++|+|||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999764
No 145
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=47.17 E-value=6.3 Score=36.75 Aligned_cols=26 Identities=31% Similarity=0.539 Sum_probs=19.8
Q ss_pred EEEeccCCCCcceeccCCCCCCCcHHHHHHHHHHHH
Q 002847 86 IFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQA 121 (874)
Q Consensus 86 IfAYGQTGSGKTyTM~Gs~e~~GIIPRaledLF~~i 121 (874)
|+-||++|.|||+.+ ...+.+|.+.+
T Consensus 1 I~i~G~~G~GKS~l~----------~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLA----------KELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHH----------HHHHHHHHHHh
Confidence 578999999999865 45666666655
No 146
>PHA00729 NTP-binding motif containing protein
Probab=46.09 E-value=16 Score=39.49 Aligned_cols=29 Identities=14% Similarity=0.253 Sum_probs=21.1
Q ss_pred HHHHHhhcCCCeeEEEeccCCCCcceecc
Q 002847 73 PVIKSVLDGYNACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 73 PlV~svLdGyN~TIfAYGQTGSGKTyTM~ 101 (874)
-+++.+..|--..|+.+|.+|+||||...
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~ 35 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYAL 35 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHH
Confidence 45555554444579999999999998653
No 147
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=46.02 E-value=82 Score=30.14 Aligned_cols=43 Identities=7% Similarity=0.236 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH
Q 002847 350 SMKNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQEQ 392 (874)
Q Consensus 350 ~~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~lqeq 392 (874)
...++++++..++.++..++++.+.|+.+++.|+....-+++.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~ 70 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEER 70 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHH
Confidence 4566777778888888888888888888888776644344333
No 148
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=45.92 E-value=40 Score=39.70 Aligned_cols=16 Identities=38% Similarity=0.742 Sum_probs=13.6
Q ss_pred eEEEeccCCCCcceec
Q 002847 85 CIFAYGQTGTGKSFTM 100 (874)
Q Consensus 85 TIfAYGQTGSGKTyTM 100 (874)
.|+-||++|+|||++.
T Consensus 219 gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 219 GVILYGPPGTGKTLLA 234 (438)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999764
No 149
>PRK13764 ATPase; Provisional
Probab=45.76 E-value=11 Score=46.16 Aligned_cols=20 Identities=30% Similarity=0.355 Sum_probs=16.5
Q ss_pred CCeeEEEeccCCCCcceecc
Q 002847 82 YNACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 82 yN~TIfAYGQTGSGKTyTM~ 101 (874)
....|+..|+||||||+++.
T Consensus 256 ~~~~ILIsG~TGSGKTTll~ 275 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQ 275 (602)
T ss_pred cCCEEEEECCCCCCHHHHHH
Confidence 34558999999999999874
No 150
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=45.64 E-value=12 Score=42.83 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=20.0
Q ss_pred HHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 73 PVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 73 PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
..+..++.|.| |++.++||||||.+.
T Consensus 37 ~aip~il~g~d--vi~~ApTGsGKTla~ 62 (423)
T PRK04837 37 LALPLTLAGRD--VAGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHHHhCCCc--EEEECCCCchHHHHH
Confidence 35567789988 466779999999863
No 151
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=45.02 E-value=13 Score=40.23 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=16.4
Q ss_pred cCCCeeEEEeccCCCCcceec
Q 002847 80 DGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 80 dGyN~TIfAYGQTGSGKTyTM 100 (874)
.|....++-||+.|+|||+++
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 444445788999999999775
No 152
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=44.89 E-value=14 Score=42.50 Aligned_cols=29 Identities=24% Similarity=0.479 Sum_probs=24.0
Q ss_pred HHHHHhhcCCCeeEEEeccCCCCcceeccCC
Q 002847 73 PVIKSVLDGYNACIFAYGQTGTGKSFTMEGT 103 (874)
Q Consensus 73 PlV~svLdGyN~TIfAYGQTGSGKTyTM~Gs 103 (874)
..|..+|+|.+| +.+..||||||..+-++
T Consensus 36 ~cIpkILeGrdc--ig~AkTGsGKT~AFaLP 64 (442)
T KOG0340|consen 36 ACIPKILEGRDC--IGCAKTGSGKTAAFALP 64 (442)
T ss_pred hhhHHHhccccc--ccccccCCCcchhhhHH
Confidence 467888999997 56779999999988764
No 153
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=44.43 E-value=43 Score=37.83 Aligned_cols=98 Identities=11% Similarity=0.145 Sum_probs=0.0
Q ss_pred ccccCCCCEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEEEecCCCCcee--EeceeeCCCCChHHHHHh--hHHHHHHh
Q 002847 3 IVSAIAGNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADNKSKNY--SFDKVFHPGSSQDEVFSE--VEPVIKSV 78 (874)
Q Consensus 3 ~v~~~kgnIrV~VRIRPl~~~E~~~~~~~vI~~d~~~v~l~~~~~~~k~F--~FD~VF~~~asQeeVF~~--V~PlV~sv 78 (874)
.+.......++++-+.+....+....-..+.-......++.........+ .++-.-.+..+-++|+.- ...-+..+
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~di~Gl~~~~~~l~~~ 137 (364)
T TIGR01242 58 VVVKSSTGPNFVVNVSAFIDRKSLKPGARVALNQQTLTIVDVLPTSKDPLVKGMEVEERPNVSYEDIGGLEEQIREIREA 137 (364)
T ss_pred EEEEeCCCCEEEEeccccCCHhHCCCCCEEEEcCCcceEEeecccccccccccceeccCCCCCHHHhCChHHHHHHHHHH
Q ss_pred hcCC--------------CeeEEEeccCCCCcceec
Q 002847 79 LDGY--------------NACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 79 LdGy--------------N~TIfAYGQTGSGKTyTM 100 (874)
+... ...|+-||++|+|||+..
T Consensus 138 i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~la 173 (364)
T TIGR01242 138 VELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLA 173 (364)
T ss_pred HHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
No 154
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=44.36 E-value=16 Score=42.27 Aligned_cols=43 Identities=28% Similarity=0.476 Sum_probs=28.9
Q ss_pred eeEEEeccCCCCcceecc--------------CCC---CCCCcHHHHHHHHHHHHHhcCC
Q 002847 84 ACIFAYGQTGTGKSFTME--------------GTP---DSPGIVPRAIEAIFKQAMESNH 126 (874)
Q Consensus 84 ~TIfAYGQTGSGKTyTM~--------------Gs~---e~~GIIPRaledLF~~i~e~~~ 126 (874)
--|+-||+.|||||-.-- |+. .--|==+|.+++||..+.+..-
T Consensus 186 KGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaP 245 (406)
T COG1222 186 KGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAP 245 (406)
T ss_pred CceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcCC
Confidence 348999999999985431 111 0014558999999998765433
No 155
>PRK10536 hypothetical protein; Provisional
Probab=44.11 E-value=12 Score=41.26 Aligned_cols=41 Identities=20% Similarity=0.380 Sum_probs=27.7
Q ss_pred eeEeceeeCCCCChHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 51 NYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 51 ~F~FD~VF~~~asQeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
.|.|-.|-+-+..|..... .+.+ +.-|++.|++||||||..
T Consensus 51 ~~~~~~i~p~n~~Q~~~l~-------al~~--~~lV~i~G~aGTGKT~La 91 (262)
T PRK10536 51 SRDTSPILARNEAQAHYLK-------AIES--KQLIFATGEAGCGKTWIS 91 (262)
T ss_pred hcCCccccCCCHHHHHHHH-------HHhc--CCeEEEECCCCCCHHHHH
Confidence 3666666666666655443 2233 348899999999999974
No 156
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=43.46 E-value=9.8 Score=42.38 Aligned_cols=18 Identities=33% Similarity=0.643 Sum_probs=15.0
Q ss_pred CeeEEEeccCCCCcceec
Q 002847 83 NACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 83 N~TIfAYGQTGSGKTyTM 100 (874)
--.|+-||++|+|||++-
T Consensus 151 PknVLFyGppGTGKTm~A 168 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMA 168 (368)
T ss_pred cceeEEECCCCccHHHHH
Confidence 456899999999999763
No 157
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=43.34 E-value=15 Score=42.78 Aligned_cols=26 Identities=42% Similarity=0.650 Sum_probs=20.9
Q ss_pred HHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 73 PVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 73 PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
..|..+++|.| |++..+||||||.+.
T Consensus 30 ~ai~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 30 QAIPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 45677788988 677789999999873
No 158
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=42.99 E-value=11 Score=38.62 Aligned_cols=16 Identities=25% Similarity=0.407 Sum_probs=14.1
Q ss_pred eeEEEeccCCCCccee
Q 002847 84 ACIFAYGQTGTGKSFT 99 (874)
Q Consensus 84 ~TIfAYGQTGSGKTyT 99 (874)
+.++-+|+||+|||++
T Consensus 4 ~~~ll~GpsGvGKT~l 19 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTEL 19 (171)
T ss_dssp EEEEEESSTTSSHHHH
T ss_pred EEEEEECCCCCCHHHH
Confidence 5688999999999995
No 159
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=42.70 E-value=15 Score=45.75 Aligned_cols=39 Identities=21% Similarity=0.375 Sum_probs=23.8
Q ss_pred ChHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCcceecc
Q 002847 63 SQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 63 sQeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM~ 101 (874)
.|+.+-.....+...+-.+.-..++-||++|+|||++..
T Consensus 32 GQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 32 GQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLAR 70 (725)
T ss_pred CcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHH
Confidence 345544322233333334555678889999999998763
No 160
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=42.25 E-value=16 Score=40.48 Aligned_cols=73 Identities=26% Similarity=0.436 Sum_probs=45.1
Q ss_pred eEeceeeCCCCChHHHHHhh-HHHHHHhh---cCCC--eeEEEeccCCCCcceecc--------------CCC---CCCC
Q 002847 52 YSFDKVFHPGSSQDEVFSEV-EPVIKSVL---DGYN--ACIFAYGQTGTGKSFTME--------------GTP---DSPG 108 (874)
Q Consensus 52 F~FD~VF~~~asQeeVF~~V-~PlV~svL---dGyN--~TIfAYGQTGSGKTyTM~--------------Gs~---e~~G 108 (874)
-.+..|=+-+..-++|-+.| -|+.+.-| =|.+ -.|+.||+.|+|||...- |+. .--|
T Consensus 152 vsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylg 231 (408)
T KOG0727|consen 152 VSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLG 231 (408)
T ss_pred ccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhc
Confidence 34444545455556666666 36665443 2443 358999999999985432 111 0126
Q ss_pred cHHHHHHHHHHHHHhc
Q 002847 109 IVPRAIEAIFKQAMES 124 (874)
Q Consensus 109 IIPRaledLF~~i~e~ 124 (874)
==||.++++|..+.+.
T Consensus 232 egprmvrdvfrlaken 247 (408)
T KOG0727|consen 232 EGPRMVRDVFRLAKEN 247 (408)
T ss_pred cCcHHHHHHHHHHhcc
Confidence 6699999999877654
No 161
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=42.17 E-value=68 Score=28.91 Aligned_cols=41 Identities=27% Similarity=0.381 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH
Q 002847 352 KNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQEQ 392 (874)
Q Consensus 352 ~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~lqeq 392 (874)
..|+.++.+|++++..+..+.+.|+.+.+.++.....+++.
T Consensus 21 ~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~r 61 (72)
T PF06005_consen 21 ALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQER 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444433333333
No 162
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=40.68 E-value=15 Score=42.95 Aligned_cols=38 Identities=26% Similarity=0.462 Sum_probs=28.5
Q ss_pred CChHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCccee
Q 002847 62 SSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFT 99 (874)
Q Consensus 62 asQeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyT 99 (874)
..|+.+...-+|+=.-+-.|.-.+.+-||+.|+|||..
T Consensus 27 vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTl 64 (436)
T COG2256 27 VGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTL 64 (436)
T ss_pred cChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHH
Confidence 34677776555555555678888899999999999964
No 163
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=40.54 E-value=26 Score=38.55 Aligned_cols=33 Identities=33% Similarity=0.589 Sum_probs=24.8
Q ss_pred HHHHHHhhcCCCeeEEEeccCCCCcceec------cCCCC
Q 002847 72 EPVIKSVLDGYNACIFAYGQTGTGKSFTM------EGTPD 105 (874)
Q Consensus 72 ~PlV~svLdGyN~TIfAYGQTGSGKTyTM------~Gs~e 105 (874)
.|++ ..+.--+..|-.||++++|||.++ +|++.
T Consensus 183 ~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~~~a~Sv~G~p~ 221 (286)
T PF06048_consen 183 APLL-SLLGVEGFGFHLYGQSSSGKTTALQLAASVWGNPD 221 (286)
T ss_pred HHHH-HHhCCCceEEEEEeCCCCCHHHHHHHhhhhCcCch
Confidence 3444 455666788999999999999876 56665
No 164
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=40.37 E-value=23 Score=43.85 Aligned_cols=36 Identities=28% Similarity=0.466 Sum_probs=27.2
Q ss_pred HHHHHhhHHHHHHhh-cCCCeeEEEeccCCCCcceec
Q 002847 65 DEVFSEVEPVIKSVL-DGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 65 eeVF~~V~PlV~svL-dGyN~TIfAYGQTGSGKTyTM 100 (874)
-.||.-.......++ .|.|.||+.-|.+|||||.|.
T Consensus 73 PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T smart00242 73 PHVFAIADNAYRNMLNDKENQSIIISGESGAGKTENT 109 (677)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEecCCCCcchHHH
Confidence 456765444444443 689999999999999999986
No 165
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=40.22 E-value=12 Score=38.47 Aligned_cols=19 Identities=37% Similarity=0.412 Sum_probs=14.0
Q ss_pred CCeeEEEeccCCCCcceec
Q 002847 82 YNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 82 yN~TIfAYGQTGSGKTyTM 100 (874)
.-..||..|+.|||||+.+
T Consensus 14 ~P~~~i~aG~~GsGKSt~~ 32 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLA 32 (199)
T ss_dssp S-EEEEEES-TTSTTHHHH
T ss_pred CCEEEEEeCCCCCCHHHHH
Confidence 3456888899999998765
No 166
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=40.19 E-value=12 Score=43.16 Aligned_cols=19 Identities=32% Similarity=0.434 Sum_probs=16.2
Q ss_pred CeeEEEeccCCCCcceecc
Q 002847 83 NACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 83 N~TIfAYGQTGSGKTyTM~ 101 (874)
...|+-+|+||+|||+|+.
T Consensus 137 g~ii~lvGptGvGKTTtia 155 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTA 155 (374)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4577889999999999964
No 167
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=39.95 E-value=25 Score=43.61 Aligned_cols=36 Identities=25% Similarity=0.457 Sum_probs=27.4
Q ss_pred HHHHHhhHHHHHHhh-cCCCeeEEEeccCCCCcceec
Q 002847 65 DEVFSEVEPVIKSVL-DGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 65 eeVF~~V~PlV~svL-dGyN~TIfAYGQTGSGKTyTM 100 (874)
-.||.-.......++ .|.|-||+.-|.+|||||.|.
T Consensus 73 PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T cd01383 73 PHVYAIADTAYNEMMRDEVNQSIIISGESGAGKTETA 109 (677)
T ss_pred CCHHHHHHHHHHHHHHcCCCceEEEecCCCCCcchHH
Confidence 356665444445544 589999999999999999985
No 168
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=39.83 E-value=24 Score=43.71 Aligned_cols=36 Identities=25% Similarity=0.535 Sum_probs=26.7
Q ss_pred HHHHHhhHHHHHHhh-cCCCeeEEEeccCCCCcceec
Q 002847 65 DEVFSEVEPVIKSVL-DGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 65 eeVF~~V~PlV~svL-dGyN~TIfAYGQTGSGKTyTM 100 (874)
-.||.-......+++ .|.|.||+.-|.+|||||.|.
T Consensus 69 PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 105 (674)
T cd01384 69 PHVFAIADAAYRAMINEGKSQSILVSGESGAGKTETT 105 (674)
T ss_pred CCHHHHHHHHHHHHHHcCCCceEEEECCCCCCchhHH
Confidence 346654443344443 689999999999999999986
No 169
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=39.66 E-value=24 Score=43.69 Aligned_cols=36 Identities=28% Similarity=0.475 Sum_probs=27.8
Q ss_pred HHHHHhhHHHHHHhh-cCCCeeEEEeccCCCCcceec
Q 002847 65 DEVFSEVEPVIKSVL-DGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 65 eeVF~~V~PlV~svL-dGyN~TIfAYGQTGSGKTyTM 100 (874)
-.||.-.......++ .|.|.||+.-|.+|||||.+.
T Consensus 67 PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (679)
T cd00124 67 PHVFAIADRAYRNMLRDRRNQSIIISGESGAGKTENT 103 (679)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 456665544555554 589999999999999999986
No 170
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=39.57 E-value=60 Score=38.76 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHh
Q 002847 351 MKNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQEQLE 394 (874)
Q Consensus 351 ~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~lqeql~ 394 (874)
..+|+++++.++.|...+.++.+.++.+|+++..++..|++|++
T Consensus 78 asELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 78 AAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555566667777777777777777763
No 171
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=39.57 E-value=50 Score=36.45 Aligned_cols=44 Identities=23% Similarity=0.459 Sum_probs=33.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh
Q 002847 343 ARDQKEVSMKNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPA 386 (874)
Q Consensus 343 ~~~~k~~~~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~ 386 (874)
.++.......+++.++..|+.|+..|+.+++.|+.++..+....
T Consensus 209 SR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~ 252 (269)
T KOG3119|consen 209 SRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLF 252 (269)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445567788888899999999999999998888776544
No 172
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=39.54 E-value=26 Score=43.38 Aligned_cols=36 Identities=22% Similarity=0.479 Sum_probs=26.9
Q ss_pred HHHHHhhHHHHHHhh-cCCCeeEEEeccCCCCcceec
Q 002847 65 DEVFSEVEPVIKSVL-DGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 65 eeVF~~V~PlV~svL-dGyN~TIfAYGQTGSGKTyTM 100 (874)
-.||.-.......++ .|.|.||+.-|.+|||||.|.
T Consensus 67 PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 103 (671)
T cd01381 67 PHIFAISDNAYTNMQREKKNQCIIISGESGAGKTEST 103 (671)
T ss_pred CCHHHHHHHHHHHHHHcCCCceEEEEcCCCCCeehHH
Confidence 346654444444443 689999999999999999986
No 173
>PRK10865 protein disaggregation chaperone; Provisional
Probab=39.34 E-value=23 Score=45.03 Aligned_cols=44 Identities=25% Similarity=0.366 Sum_probs=28.3
Q ss_pred EeceeeCCCCChHHHHHhhHHHHHHhhcCCC------eeEEEeccCCCCcceec
Q 002847 53 SFDKVFHPGSSQDEVFSEVEPVIKSVLDGYN------ACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 53 ~FD~VF~~~asQeeVF~~V~PlV~svLdGyN------~TIfAYGQTGSGKTyTM 100 (874)
-+.+|++ |...-..|...|..+..|.. +.++-+|++|+|||++.
T Consensus 566 l~~~viG----Q~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA 615 (857)
T PRK10865 566 LHHRVIG----QNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615 (857)
T ss_pred hCCeEeC----CHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHH
Confidence 3566665 45555555544554444433 57888899999999963
No 174
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=39.31 E-value=32 Score=40.56 Aligned_cols=18 Identities=33% Similarity=0.477 Sum_probs=15.7
Q ss_pred CeeEEEeccCCCCcceec
Q 002847 83 NACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 83 N~TIfAYGQTGSGKTyTM 100 (874)
-..|+-+|.+|+|||+|.
T Consensus 95 p~vI~lvG~~GsGKTTta 112 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTA 112 (437)
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 457888999999999996
No 175
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=39.27 E-value=24 Score=41.19 Aligned_cols=18 Identities=33% Similarity=0.536 Sum_probs=15.0
Q ss_pred eeEEEeccCCCCcceecc
Q 002847 84 ACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 84 ~TIfAYGQTGSGKTyTM~ 101 (874)
..|+-.|+||+|||+|+.
T Consensus 222 ~~i~~vGptGvGKTTt~~ 239 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLA 239 (424)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 366777999999999964
No 176
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=38.98 E-value=27 Score=43.30 Aligned_cols=36 Identities=19% Similarity=0.493 Sum_probs=27.2
Q ss_pred HHHHHhhHHHHHHhh-cCCCeeEEEeccCCCCcceec
Q 002847 65 DEVFSEVEPVIKSVL-DGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 65 eeVF~~V~PlV~svL-dGyN~TIfAYGQTGSGKTyTM 100 (874)
-.||.-.......++ .|.|.||+.-|.+|||||.|.
T Consensus 67 PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (674)
T cd01378 67 PHIYALADNAYRSMKSENENQCVIISGESGAGKTEAA 103 (674)
T ss_pred CCHHHHHHHHHHHHHHcCCCceEEEEcCCCCCcchHH
Confidence 346665444444444 689999999999999999986
No 177
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=38.75 E-value=26 Score=43.37 Aligned_cols=36 Identities=22% Similarity=0.470 Sum_probs=27.5
Q ss_pred HHHHHhhHHHHHHhh-cCCCeeEEEeccCCCCcceec
Q 002847 65 DEVFSEVEPVIKSVL-DGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 65 eeVF~~V~PlV~svL-dGyN~TIfAYGQTGSGKTyTM 100 (874)
-.||.-.......++ .|.|-||+.-|.+|||||.|.
T Consensus 68 PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 104 (677)
T cd01387 68 PHLFAIANLAFAKMLDAKQNQCVIISGESGSGKTEAT 104 (677)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEEcCCCCCeehHH
Confidence 446765444444444 699999999999999999986
No 178
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=38.71 E-value=26 Score=43.56 Aligned_cols=36 Identities=25% Similarity=0.501 Sum_probs=26.7
Q ss_pred HHHHHhhHHHHHHhh-cCCCeeEEEeccCCCCcceec
Q 002847 65 DEVFSEVEPVIKSVL-DGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 65 eeVF~~V~PlV~svL-dGyN~TIfAYGQTGSGKTyTM 100 (874)
-.||.-.......++ .|.|-||+.-|.+|||||.|.
T Consensus 75 PHiy~iA~~Ay~~m~~~~~~QsIiisGESGAGKTet~ 111 (692)
T cd01385 75 PHIFAIADVAYYNMLRKKVNQCIVISGESGSGKTEST 111 (692)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 446664443444433 688999999999999999986
No 179
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=38.37 E-value=12 Score=35.31 Aligned_cols=16 Identities=38% Similarity=0.677 Sum_probs=13.3
Q ss_pred EEEeccCCCCcceecc
Q 002847 86 IFAYGQTGTGKSFTME 101 (874)
Q Consensus 86 IfAYGQTGSGKTyTM~ 101 (874)
++-+|++|+|||+.+.
T Consensus 2 ~~i~G~~G~GKT~l~~ 17 (165)
T cd01120 2 ILVFGPTGSGKTTLAL 17 (165)
T ss_pred eeEeCCCCCCHHHHHH
Confidence 5679999999998753
No 180
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=38.31 E-value=21 Score=41.83 Aligned_cols=26 Identities=42% Similarity=0.556 Sum_probs=20.0
Q ss_pred HHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 73 PVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 73 PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
..|..++.|.++ ++..+||||||.+.
T Consensus 18 ~ai~~~l~g~dv--lv~apTGsGKTl~y 43 (470)
T TIGR00614 18 EVINAVLLGRDC--FVVMPTGGGKSLCY 43 (470)
T ss_pred HHHHHHHcCCCE--EEEcCCCCcHhHHH
Confidence 356778899974 66679999999763
No 181
>PF05729 NACHT: NACHT domain
Probab=38.10 E-value=14 Score=35.29 Aligned_cols=16 Identities=31% Similarity=0.657 Sum_probs=13.9
Q ss_pred eEEEeccCCCCcceec
Q 002847 85 CIFAYGQTGTGKSFTM 100 (874)
Q Consensus 85 TIfAYGQTGSGKTyTM 100 (874)
.++.+|..|+|||..|
T Consensus 2 ~l~I~G~~G~GKStll 17 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL 17 (166)
T ss_pred EEEEECCCCCChHHHH
Confidence 4788999999999876
No 182
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=38.02 E-value=18 Score=36.93 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=18.8
Q ss_pred HHhhcCC---CeeEEEeccCCCCcceec
Q 002847 76 KSVLDGY---NACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 76 ~svLdGy---N~TIfAYGQTGSGKTyTM 100 (874)
+.+|.|- ...+.-||++|||||...
T Consensus 2 D~~l~GGi~~g~i~~i~G~~GsGKT~l~ 29 (209)
T TIGR02237 2 DELLGGGVERGTITQIYGPPGSGKTNIC 29 (209)
T ss_pred hhhhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4455544 677899999999999753
No 183
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=37.88 E-value=23 Score=38.54 Aligned_cols=30 Identities=30% Similarity=0.328 Sum_probs=21.2
Q ss_pred hHHHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 71 VEPVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 71 V~PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
+..+|...=..-+.+|.-+|+-|||||+.|
T Consensus 8 la~~I~~~~~~~~~~IgL~G~WGsGKSs~l 37 (325)
T PF07693_consen 8 LAEIIKNPDSDDPFVIGLYGEWGSGKSSFL 37 (325)
T ss_pred HHHHHhccCCCCCeEEEEECCCCCCHHHHH
Confidence 344443332256788999999999999865
No 184
>PRK14974 cell division protein FtsY; Provisional
Probab=37.83 E-value=31 Score=39.20 Aligned_cols=19 Identities=37% Similarity=0.504 Sum_probs=16.3
Q ss_pred CeeEEEeccCCCCcceecc
Q 002847 83 NACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 83 N~TIfAYGQTGSGKTyTM~ 101 (874)
...|...|.+|+|||.|+.
T Consensus 140 ~~vi~~~G~~GvGKTTtia 158 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIA 158 (336)
T ss_pred CeEEEEEcCCCCCHHHHHH
Confidence 4678899999999999863
No 185
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=37.83 E-value=32 Score=38.67 Aligned_cols=19 Identities=32% Similarity=0.480 Sum_probs=15.4
Q ss_pred CeeEEEeccCCCCcceecc
Q 002847 83 NACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 83 N~TIfAYGQTGSGKTyTM~ 101 (874)
...|.-.|++|+|||.|+.
T Consensus 114 ~~vi~lvGpnGsGKTTt~~ 132 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIG 132 (318)
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 3467778999999999963
No 186
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=37.41 E-value=20 Score=44.00 Aligned_cols=18 Identities=33% Similarity=0.460 Sum_probs=15.2
Q ss_pred eEEEeccCCCCcceeccC
Q 002847 85 CIFAYGQTGTGKSFTMEG 102 (874)
Q Consensus 85 TIfAYGQTGSGKTyTM~G 102 (874)
.++..|++|||||||+..
T Consensus 175 ~~lI~GpPGTGKT~t~~~ 192 (637)
T TIGR00376 175 LFLIHGPPGTGKTRTLVE 192 (637)
T ss_pred eEEEEcCCCCCHHHHHHH
Confidence 467899999999999753
No 187
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=36.91 E-value=29 Score=40.16 Aligned_cols=28 Identities=32% Similarity=0.640 Sum_probs=21.9
Q ss_pred HHHHHhhcCCC---eeEEEeccCCCCcceecc
Q 002847 73 PVIKSVLDGYN---ACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 73 PlV~svLdGyN---~TIfAYGQTGSGKTyTM~ 101 (874)
|++...|.|.- -|||+ |+||||||.-|.
T Consensus 261 pvLNk~LkGhR~GElTvlT-GpTGsGKTTFls 291 (514)
T KOG2373|consen 261 PVLNKYLKGHRPGELTVLT-GPTGSGKTTFLS 291 (514)
T ss_pred hHHHHHhccCCCCceEEEe-cCCCCCceeEeh
Confidence 67788888874 46665 999999998774
No 188
>PRK06696 uridine kinase; Validated
Probab=36.70 E-value=37 Score=35.63 Aligned_cols=34 Identities=18% Similarity=0.118 Sum_probs=21.5
Q ss_pred HHHHhhHHHHHHhhcCCCeeEEEeccCCCCccee
Q 002847 66 EVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFT 99 (874)
Q Consensus 66 eVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyT 99 (874)
++.+++...|.+.-.+....|...|.+|||||+.
T Consensus 5 ~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTl 38 (223)
T PRK06696 5 QLIKELAEHILTLNLTRPLRVAIDGITASGKTTF 38 (223)
T ss_pred HHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHH
Confidence 3444433333333345666788889999999975
No 189
>PRK04328 hypothetical protein; Provisional
Probab=36.64 E-value=25 Score=37.82 Aligned_cols=26 Identities=35% Similarity=0.584 Sum_probs=21.1
Q ss_pred HHHHHhhcC---CCeeEEEeccCCCCcce
Q 002847 73 PVIKSVLDG---YNACIFAYGQTGTGKSF 98 (874)
Q Consensus 73 PlV~svLdG---yN~TIfAYGQTGSGKTy 98 (874)
+-++.+|.| ...+++.+|.+|||||.
T Consensus 10 ~~LD~lL~GGip~gs~ili~G~pGsGKT~ 38 (249)
T PRK04328 10 PGMDEILYGGIPERNVVLLSGGPGTGKSI 38 (249)
T ss_pred hhHHHHhcCCCcCCcEEEEEcCCCCCHHH
Confidence 346778876 47889999999999975
No 190
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=36.48 E-value=92 Score=30.06 Aligned_cols=46 Identities=24% Similarity=0.347 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHhh
Q 002847 350 SMKNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQEQLEV 395 (874)
Q Consensus 350 ~~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~lqeql~~ 395 (874)
....|...++.-+.++.++..|++.|.-.-.+|.+....+|++++.
T Consensus 27 k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~ 72 (102)
T PF10205_consen 27 KNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEE 72 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777778888888999999999999999999999888874
No 191
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=36.43 E-value=34 Score=37.59 Aligned_cols=19 Identities=32% Similarity=0.487 Sum_probs=14.9
Q ss_pred CeeEEEeccCCCCcceecc
Q 002847 83 NACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 83 N~TIfAYGQTGSGKTyTM~ 101 (874)
..+|...|++|+|||.|..
T Consensus 72 ~~vi~l~G~~G~GKTTt~a 90 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIA 90 (272)
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 3466666999999999963
No 192
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=36.39 E-value=27 Score=43.50 Aligned_cols=36 Identities=19% Similarity=0.333 Sum_probs=26.8
Q ss_pred HHHHHhhHHHHHHhh-cCCCeeEEEeccCCCCcceec
Q 002847 65 DEVFSEVEPVIKSVL-DGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 65 eeVF~~V~PlV~svL-dGyN~TIfAYGQTGSGKTyTM 100 (874)
-.||.-.......++ .|.|.||+.-|.+|||||.|.
T Consensus 72 PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 108 (717)
T cd01382 72 PHVFAIADKAYRDMKVLKMSQSIIVSGESGAGKTENT 108 (717)
T ss_pred CcHHHHHHHHHHHHHhcCCCCeEEEecCCCCChhHHH
Confidence 346654444444443 689999999999999999986
No 193
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=36.30 E-value=30 Score=43.49 Aligned_cols=37 Identities=27% Similarity=0.355 Sum_probs=25.6
Q ss_pred hHHHHHhhHHHHHHhhcCC------CeeEEEeccCCCCcceec
Q 002847 64 QDEVFSEVEPVIKSVLDGY------NACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 64 QeeVF~~V~PlV~svLdGy------N~TIfAYGQTGSGKTyTM 100 (874)
|++.-..+...|.....|. .++++-+|+||+|||+..
T Consensus 463 Q~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lA 505 (758)
T PRK11034 463 QDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVT 505 (758)
T ss_pred cHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHH
Confidence 4555555555555554454 367999999999999874
No 194
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=36.28 E-value=23 Score=41.87 Aligned_cols=51 Identities=22% Similarity=0.350 Sum_probs=28.0
Q ss_pred ceeEeceeeCCCCChHHHHHhhHHHHH-Hhhc--C--CCeeEEEeccCCCCcceec
Q 002847 50 KNYSFDKVFHPGSSQDEVFSEVEPVIK-SVLD--G--YNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 50 k~F~FD~VF~~~asQeeVF~~V~PlV~-svLd--G--yN~TIfAYGQTGSGKTyTM 100 (874)
...+||.|.+.+...+++.+.+..+-. ..+. | ..-.|+-||++|+|||+..
T Consensus 50 ~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la 105 (495)
T TIGR01241 50 PKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHH
Confidence 356788877654433333322221110 0111 2 2335889999999999875
No 195
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=36.21 E-value=30 Score=40.70 Aligned_cols=18 Identities=39% Similarity=0.538 Sum_probs=15.7
Q ss_pred eeEEEeccCCCCcceecc
Q 002847 84 ACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 84 ~TIfAYGQTGSGKTyTM~ 101 (874)
..|+-.|++|+|||+|+.
T Consensus 242 ~vI~LVGptGvGKTTTia 259 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLA 259 (436)
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 578899999999999963
No 196
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=35.93 E-value=30 Score=43.02 Aligned_cols=36 Identities=28% Similarity=0.485 Sum_probs=27.1
Q ss_pred HHHHHhhHHHHHHhh-cCCCeeEEEeccCCCCcceec
Q 002847 65 DEVFSEVEPVIKSVL-DGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 65 eeVF~~V~PlV~svL-dGyN~TIfAYGQTGSGKTyTM 100 (874)
-.||.-.......++ .|.|.||+.-|.+|||||.+.
T Consensus 72 PHiyaiA~~Ay~~m~~~~~~QsIiiSGESGAGKTes~ 108 (693)
T cd01377 72 PHIFAIADNAYRSMLQDRENQSILITGESGAGKTENT 108 (693)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 456765444444443 699999999999999999985
No 197
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=35.93 E-value=22 Score=42.29 Aligned_cols=44 Identities=20% Similarity=0.347 Sum_probs=29.8
Q ss_pred eeEeceeeCCCCChHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCccee
Q 002847 51 NYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFT 99 (874)
Q Consensus 51 ~F~FD~VF~~~asQeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyT 99 (874)
.+.|+.+.+.+..=..+.+.+ ..+ ...+..|+-+|.+||||++.
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~----~~~-a~~~~pvli~Ge~GtGK~~l 235 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQA----RVV-ARSNSTVLLRGESGTGKELI 235 (534)
T ss_pred cCccCceEECCHHHHHHHHHH----HHH-hCcCCCEEEECCCCccHHHH
Confidence 377888887654444444333 222 35688899999999999764
No 198
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=35.89 E-value=30 Score=42.95 Aligned_cols=36 Identities=28% Similarity=0.486 Sum_probs=27.0
Q ss_pred HHHHHhhHHHHHHhh-cCCCeeEEEeccCCCCcceec
Q 002847 65 DEVFSEVEPVIKSVL-DGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 65 eeVF~~V~PlV~svL-dGyN~TIfAYGQTGSGKTyTM 100 (874)
-.||.-.......++ .|.|-||+.-|.+|||||.+.
T Consensus 67 PHifaiA~~Ay~~m~~~~~~QsIiiSGESGaGKTes~ 103 (691)
T cd01380 67 PHIFAIAEEAYKQMTRDEKNQSIIVSGESGAGKTVSA 103 (691)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 346665444444444 799999999999999999986
No 199
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.73 E-value=1.2e+02 Score=27.55 Aligned_cols=37 Identities=24% Similarity=0.389 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChh
Q 002847 351 MKNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAH 387 (874)
Q Consensus 351 ~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~ 387 (874)
+.-|+-++.+|++++..|.+|...++...+.|.+++.
T Consensus 20 I~LLQmEieELKEknn~l~~e~q~~q~~reaL~~ene 56 (79)
T COG3074 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENE 56 (79)
T ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555544443
No 200
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=35.58 E-value=25 Score=43.30 Aligned_cols=38 Identities=26% Similarity=0.378 Sum_probs=23.7
Q ss_pred hHHHHHhhHHHHHHhhcCC--CeeEEEeccCCCCcceecc
Q 002847 64 QDEVFSEVEPVIKSVLDGY--NACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 64 QeeVF~~V~PlV~svLdGy--N~TIfAYGQTGSGKTyTM~ 101 (874)
|+.....|+.++..+.-+. .-.++-||++|+|||.++.
T Consensus 89 ~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~ 128 (637)
T TIGR00602 89 HKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIK 128 (637)
T ss_pred cHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHH
Confidence 3444444555555544332 2248889999999999864
No 201
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=35.51 E-value=24 Score=36.60 Aligned_cols=28 Identities=21% Similarity=0.412 Sum_probs=21.7
Q ss_pred HHHHHhhcC---CCeeEEEeccCCCCcceec
Q 002847 73 PVIKSVLDG---YNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 73 PlV~svLdG---yN~TIfAYGQTGSGKTyTM 100 (874)
+-++.++.| ....+.-+|++|||||..+
T Consensus 6 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (235)
T cd01123 6 KALDELLGGGIETGSITEIFGEFGSGKTQLC 36 (235)
T ss_pred hhhHhhccCCCCCCeEEEEECCCCCCHHHHH
Confidence 446777775 3577899999999999764
No 202
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=35.50 E-value=23 Score=39.28 Aligned_cols=29 Identities=21% Similarity=0.398 Sum_probs=21.6
Q ss_pred hHHHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 71 VEPVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 71 V~PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
+.+++..++.+. ..|+-.|.||||||..|
T Consensus 133 ~~~~l~~~v~~~-~~ili~G~tGsGKTTll 161 (308)
T TIGR02788 133 IKEFLRLAIASR-KNIIISGGTGSGKTTFL 161 (308)
T ss_pred HHHHHHHHhhCC-CEEEEECCCCCCHHHHH
Confidence 566777777554 45667799999999975
No 203
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=35.37 E-value=15 Score=42.75 Aligned_cols=38 Identities=18% Similarity=0.522 Sum_probs=25.8
Q ss_pred eeEEEeccCCCCcceeccCCCCCCCcHHHHHHHHHHHHHhcCCeeEEEEEEEEEec
Q 002847 84 ACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAMESNHAFRISFSMLEIYL 139 (874)
Q Consensus 84 ~TIfAYGQTGSGKTyTM~Gs~e~~GIIPRaledLF~~i~e~~~~f~VsVS~lEIYN 139 (874)
..|+-||.+||||||++ +.+|+.. ..-.|++.++|-|.
T Consensus 31 S~~~iyG~sgTGKT~~~--------------r~~l~~~----n~~~vw~n~~ecft 68 (438)
T KOG2543|consen 31 SIVHIYGHSGTGKTYLV--------------RQLLRKL----NLENVWLNCVECFT 68 (438)
T ss_pred eeEEEeccCCCchhHHH--------------HHHHhhc----CCcceeeehHHhcc
Confidence 34689999999999974 3445433 22356777777773
No 204
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=35.22 E-value=20 Score=39.30 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=19.6
Q ss_pred HHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 73 PVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 73 PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
-+++..+.. +--|+-+|++|+|||-++
T Consensus 24 ~ll~~l~~~-~~pvLl~G~~GtGKT~li 50 (272)
T PF12775_consen 24 YLLDLLLSN-GRPVLLVGPSGTGKTSLI 50 (272)
T ss_dssp HHHHHHHHC-TEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHHc-CCcEEEECCCCCchhHHH
Confidence 355555543 556789999999998765
No 205
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=34.96 E-value=22 Score=43.57 Aligned_cols=25 Identities=32% Similarity=0.648 Sum_probs=20.1
Q ss_pred HHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 74 VIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 74 lV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
+|..++.|.+ |++.+|||||||.+.
T Consensus 36 ai~~ll~g~d--vl~~ApTGsGKT~af 60 (629)
T PRK11634 36 CIPHLLNGRD--VLGMAQTGSGKTAAF 60 (629)
T ss_pred HHHHHHcCCC--EEEEcCCCCcHHHHH
Confidence 5566778877 688889999999864
No 206
>smart00338 BRLZ basic region leucin zipper.
Probab=34.64 E-value=1.5e+02 Score=25.50 Aligned_cols=42 Identities=19% Similarity=0.381 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q 002847 352 KNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQEQL 393 (874)
Q Consensus 352 ~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~lqeql 393 (874)
..-...+..|+.++..|..++..|..++..+..++..+..++
T Consensus 22 ~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 22 ERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444566778888888899999999999888888777766554
No 207
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=34.59 E-value=26 Score=42.06 Aligned_cols=43 Identities=21% Similarity=0.377 Sum_probs=28.1
Q ss_pred ceeEeceeeCCCCChHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCccee
Q 002847 50 KNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFT 99 (874)
Q Consensus 50 k~F~FD~VF~~~asQeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyT 99 (874)
+.-.|+.+++.+ ..- +.+...+..+....|+-||++|+|||+.
T Consensus 60 rp~~f~~iiGqs----~~i---~~l~~al~~~~~~~vLi~Ge~GtGKt~l 102 (531)
T TIGR02902 60 RPKSFDEIIGQE----EGI---KALKAALCGPNPQHVIIYGPPGVGKTAA 102 (531)
T ss_pred CcCCHHHeeCcH----HHH---HHHHHHHhCCCCceEEEECCCCCCHHHH
Confidence 445677777643 332 3333344566667788899999999864
No 208
>PRK10884 SH3 domain-containing protein; Provisional
Probab=34.47 E-value=1.1e+02 Score=32.65 Aligned_cols=33 Identities=12% Similarity=0.230 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh
Q 002847 354 LQQKMKKIEEERLRVRGEIENLSEKLEALTRPA 386 (874)
Q Consensus 354 Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~ 386 (874)
..+.+.+|++|+..|+++++.++.+++.++.++
T Consensus 130 ~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~ 162 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQLIVAQKKVDAANLQL 162 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555555554444333
No 209
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=34.41 E-value=38 Score=39.10 Aligned_cols=46 Identities=30% Similarity=0.492 Sum_probs=28.2
Q ss_pred ceeE-ec-eeeCCCCChHHHHHhhHHHHHHhhcC---CCeeEEEeccCCCCccee
Q 002847 50 KNYS-FD-KVFHPGSSQDEVFSEVEPVIKSVLDG---YNACIFAYGQTGTGKSFT 99 (874)
Q Consensus 50 k~F~-FD-~VF~~~asQeeVF~~V~PlV~svLdG---yN~TIfAYGQTGSGKTyT 99 (874)
+.|. || .||+. ++.-..+...+.....| .+-.+.-.|++|||||..
T Consensus 44 ~~y~~F~~~~~G~----~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStl 94 (361)
T smart00763 44 KRYRFFDHDFFGM----EEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSL 94 (361)
T ss_pred eeccccchhccCc----HHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHH
Confidence 4455 45 67764 44444433344444444 456678899999999864
No 210
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=34.39 E-value=1.2e+02 Score=30.57 Aligned_cols=33 Identities=21% Similarity=0.476 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHH
Q 002847 359 KKIEEERLRVRGEIENLSEKLEALTRPAHSFQE 391 (874)
Q Consensus 359 k~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~lqe 391 (874)
.+||.+...|.++++.|++++.++..+...+..
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~ 109 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSRLRRELDAYKS 109 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666655555444433
No 211
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=34.32 E-value=28 Score=36.52 Aligned_cols=28 Identities=32% Similarity=0.389 Sum_probs=21.1
Q ss_pred HHHHHhhcCC---CeeEEEeccCCCCcceec
Q 002847 73 PVIKSVLDGY---NACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 73 PlV~svLdGy---N~TIfAYGQTGSGKTyTM 100 (874)
+-++.++.|- ..+++.+|.+|||||+-.
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~ 42 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLS 42 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHH
Confidence 4457777643 677888899999998753
No 212
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=33.95 E-value=31 Score=40.37 Aligned_cols=19 Identities=37% Similarity=0.518 Sum_probs=16.2
Q ss_pred CeeEEEeccCCCCcceecc
Q 002847 83 NACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 83 N~TIfAYGQTGSGKTyTM~ 101 (874)
..-|.-.|+||.|||.|+-
T Consensus 203 ~~vi~LVGPTGVGKTTTlA 221 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLA 221 (407)
T ss_pred CcEEEEECCCCCcHHHHHH
Confidence 6667788999999999963
No 213
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=33.95 E-value=31 Score=39.95 Aligned_cols=17 Identities=29% Similarity=0.647 Sum_probs=15.4
Q ss_pred eeEEEeccCCCCcceec
Q 002847 84 ACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 84 ~TIfAYGQTGSGKTyTM 100 (874)
.-++.+|+||||||.++
T Consensus 45 ~h~lvig~tgSGKt~~~ 61 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSF 61 (469)
T ss_pred eEEEEEeCCCCCcccee
Confidence 56899999999999987
No 214
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=33.80 E-value=53 Score=38.84 Aligned_cols=49 Identities=31% Similarity=0.501 Sum_probs=30.7
Q ss_pred eeEEEeccCCCCcce-------------e-ccCCCCCC-C-cHHHHHHHHHHHHHhcCCeeEEEE
Q 002847 84 ACIFAYGQTGTGKSF-------------T-MEGTPDSP-G-IVPRAIEAIFKQAMESNHAFRISF 132 (874)
Q Consensus 84 ~TIfAYGQTGSGKTy-------------T-M~Gs~e~~-G-IIPRaledLF~~i~e~~~~f~VsV 132 (874)
--|+-||++|+|||. . |.|.+-.| | =.--.|..||+-...++.-..+.|
T Consensus 385 RNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qaVTkiH~lFDWakkS~rGLllFI 449 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQAVTKIHKLFDWAKKSRRGLLLFI 449 (630)
T ss_pred hheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccchHHHHHHHHHHHHHhhcccceEEEe
Confidence 358999999999983 2 23433221 1 112468889998877766655543
No 215
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=33.77 E-value=16 Score=39.21 Aligned_cols=20 Identities=35% Similarity=0.570 Sum_probs=16.6
Q ss_pred CeeEEEeccCCCCcceeccC
Q 002847 83 NACIFAYGQTGTGKSFTMEG 102 (874)
Q Consensus 83 N~TIfAYGQTGSGKTyTM~G 102 (874)
...++-||.+|+|||++.-.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~ 31 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKY 31 (220)
T ss_pred CcEEEEECCCCCCHHHHHHh
Confidence 45699999999999997644
No 216
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=33.67 E-value=34 Score=42.62 Aligned_cols=37 Identities=30% Similarity=0.364 Sum_probs=23.4
Q ss_pred hHHHHHhhHHHHHHhhcCC------CeeEEEeccCCCCcceec
Q 002847 64 QDEVFSEVEPVIKSVLDGY------NACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 64 QeeVF~~V~PlV~svLdGy------N~TIfAYGQTGSGKTyTM 100 (874)
|++.-+.+...+.....|. .++++-+|+||+|||++.
T Consensus 459 Q~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA 501 (731)
T TIGR02639 459 QDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELA 501 (731)
T ss_pred cHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHH
Confidence 4444444444444443444 356889999999999763
No 217
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=33.54 E-value=15 Score=40.65 Aligned_cols=20 Identities=35% Similarity=0.642 Sum_probs=17.6
Q ss_pred cCCCeeEEEeccCCCCccee
Q 002847 80 DGYNACIFAYGQTGTGKSFT 99 (874)
Q Consensus 80 dGyN~TIfAYGQTGSGKTyT 99 (874)
.|++-+|+..|++|+|||.-
T Consensus 1 kg~~fnImVvG~sG~GKTTF 20 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKTTF 20 (281)
T ss_dssp HEEEEEEEEEECTTSSHHHH
T ss_pred CCceEEEEEECCCCCCHHHH
Confidence 47889999999999999863
No 218
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=33.50 E-value=18 Score=35.71 Aligned_cols=18 Identities=33% Similarity=0.545 Sum_probs=14.8
Q ss_pred CeeEEEeccCCCCcceec
Q 002847 83 NACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 83 N~TIfAYGQTGSGKTyTM 100 (874)
++..+-||++|+|||..|
T Consensus 19 ~g~~vi~G~Ng~GKStil 36 (202)
T PF13476_consen 19 PGLNVIYGPNGSGKSTIL 36 (202)
T ss_dssp SEEEEEEESTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 356678999999999875
No 219
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=33.45 E-value=34 Score=39.92 Aligned_cols=73 Identities=21% Similarity=0.311 Sum_probs=42.9
Q ss_pred eeEeceeeCCCCChHHHHHh-hHHHHHHhhc--C--CCeeEEEeccCCCCcceec------cCC-----------CCCCC
Q 002847 51 NYSFDKVFHPGSSQDEVFSE-VEPVIKSVLD--G--YNACIFAYGQTGTGKSFTM------EGT-----------PDSPG 108 (874)
Q Consensus 51 ~F~FD~VF~~~asQeeVF~~-V~PlV~svLd--G--yN~TIfAYGQTGSGKTyTM------~Gs-----------~e~~G 108 (874)
++.||.+.+.----..+.+. +..+.+..+. | .---+.-||+.|+|||+.. .|- ....|
T Consensus 111 ~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vG 190 (413)
T PLN00020 111 TRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAG 190 (413)
T ss_pred hcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCC
Confidence 45566665433333333444 3466666653 2 2345778999999999873 221 12346
Q ss_pred cHHHHHHHHHHHHHh
Q 002847 109 IVPRAIEAIFKQAME 123 (874)
Q Consensus 109 IIPRaledLF~~i~e 123 (874)
=-.+.++++|..+.+
T Consensus 191 EsEk~IR~~F~~A~~ 205 (413)
T PLN00020 191 EPGKLIRQRYREAAD 205 (413)
T ss_pred cHHHHHHHHHHHHHH
Confidence 667888888876643
No 220
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=33.01 E-value=18 Score=41.32 Aligned_cols=45 Identities=29% Similarity=0.431 Sum_probs=29.4
Q ss_pred CceeEeceeeCCCCChHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 49 SKNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 49 ~k~F~FD~VF~~~asQeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
...|.|+.|-+ |+++= ..++..+.+-.-+.|+.+|.+|||||+.+
T Consensus 11 ~~~~pf~~ivG----q~~~k---~al~~~~~~p~~~~vli~G~~GtGKs~~a 55 (350)
T CHL00081 11 RPVFPFTAIVG----QEEMK---LALILNVIDPKIGGVMIMGDRGTGKSTTI 55 (350)
T ss_pred CCCCCHHHHhC----hHHHH---HHHHHhccCCCCCeEEEEcCCCCCHHHHH
Confidence 34688888766 44432 33444444433356889999999999874
No 221
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.70 E-value=83 Score=28.55 Aligned_cols=37 Identities=27% Similarity=0.338 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHH
Q 002847 354 LQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQ 390 (874)
Q Consensus 354 Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~lq 390 (874)
|+.+++..-+-+.-|+-||++|+++-..|..+...++
T Consensus 9 LE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q 45 (79)
T COG3074 9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQ 45 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHH
Confidence 3444444444444444455555554444444443333
No 222
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=32.68 E-value=29 Score=39.36 Aligned_cols=29 Identities=21% Similarity=0.468 Sum_probs=22.6
Q ss_pred hHHHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 71 VEPVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 71 V~PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
+..++..++.+. +.|+..|.||||||.+|
T Consensus 167 ~~~~L~~~v~~~-~~ili~G~tGsGKTTll 195 (340)
T TIGR03819 167 VARLLRAIVAAR-LAFLISGGTGSGKTTLL 195 (340)
T ss_pred HHHHHHHHHhCC-CeEEEECCCCCCHHHHH
Confidence 456677777654 68888999999998865
No 223
>PRK00131 aroK shikimate kinase; Reviewed
Probab=32.41 E-value=21 Score=34.73 Aligned_cols=16 Identities=38% Similarity=0.428 Sum_probs=14.0
Q ss_pred eeEEEeccCCCCccee
Q 002847 84 ACIFAYGQTGTGKSFT 99 (874)
Q Consensus 84 ~TIfAYGQTGSGKTyT 99 (874)
-.|+.+|.+|||||+.
T Consensus 5 ~~i~l~G~~GsGKstl 20 (175)
T PRK00131 5 PNIVLIGFMGAGKSTI 20 (175)
T ss_pred CeEEEEcCCCCCHHHH
Confidence 3689999999999976
No 224
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=32.35 E-value=31 Score=40.98 Aligned_cols=28 Identities=7% Similarity=0.226 Sum_probs=20.1
Q ss_pred cCCCceeeEEEecCCCCCCHHHHHHHHHHHHH
Q 002847 298 LGEDSKTLMLVHVSPKEDDLCETICSLNFATR 329 (874)
Q Consensus 298 LGGNSKT~mIa~ISPs~~~~eETLsTLrFAsR 329 (874)
+.-..+..+|||.+..... +..|.+|-|
T Consensus 320 f~iP~Nl~IIgTMNt~Drs----~~~lD~Alr 347 (459)
T PRK11331 320 FYVPENVYIIGLMNTADRS----LAVVDYALR 347 (459)
T ss_pred ccCCCCeEEEEecCccccc----hhhccHHHH
Confidence 4456889999999988754 445666644
No 225
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=32.34 E-value=92 Score=35.50 Aligned_cols=50 Identities=20% Similarity=0.218 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHhhccCCc
Q 002847 351 MKNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQEQLEVSHSSE 400 (874)
Q Consensus 351 ~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~lqeql~~~~~~e 400 (874)
.--|+.++.+|++++..+..|++.++++|.-.++.+.-+|.-|++.+...
T Consensus 177 v~LLqkk~~~l~~~l~~~~~eL~~~~k~L~faqekn~LlqslLddaniD~ 226 (323)
T PF08537_consen 177 VILLQKKIDELEERLNDLEKELEITKKDLKFAQEKNALLQSLLDDANIDS 226 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccH
Confidence 34577788888888888888888888888887777777777777655433
No 226
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=32.33 E-value=27 Score=42.22 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=20.7
Q ss_pred HHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 73 PVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 73 PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
..|..+++|.| |++..+||||||.+.
T Consensus 38 ~~ip~~l~G~D--vi~~ApTGSGKTlaf 63 (572)
T PRK04537 38 LTLPVALPGGD--VAGQAQTGTGKTLAF 63 (572)
T ss_pred HHHHHHhCCCC--EEEEcCCCCcHHHHH
Confidence 35677889998 566789999999764
No 227
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=32.28 E-value=20 Score=35.73 Aligned_cols=14 Identities=36% Similarity=0.762 Sum_probs=12.5
Q ss_pred EEEeccCCCCccee
Q 002847 86 IFAYGQTGTGKSFT 99 (874)
Q Consensus 86 IfAYGQTGSGKTyT 99 (874)
|+.+|.+|||||+.
T Consensus 2 i~i~G~pGsGKst~ 15 (183)
T TIGR01359 2 VFVLGGPGSGKGTQ 15 (183)
T ss_pred EEEECCCCCCHHHH
Confidence 78899999999875
No 228
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=32.22 E-value=20 Score=40.95 Aligned_cols=16 Identities=38% Similarity=0.675 Sum_probs=13.6
Q ss_pred eeEEEeccCCCCccee
Q 002847 84 ACIFAYGQTGTGKSFT 99 (874)
Q Consensus 84 ~TIfAYGQTGSGKTyT 99 (874)
+-|+..|+||||||+.
T Consensus 98 SNILLiGPTGsGKTlL 113 (408)
T COG1219 98 SNILLIGPTGSGKTLL 113 (408)
T ss_pred ccEEEECCCCCcHHHH
Confidence 4588999999999963
No 229
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=32.09 E-value=37 Score=41.54 Aligned_cols=18 Identities=33% Similarity=0.484 Sum_probs=15.0
Q ss_pred eeEEEeccCCCCcceecc
Q 002847 84 ACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 84 ~TIfAYGQTGSGKTyTM~ 101 (874)
-..+-.|++|||||||+.
T Consensus 202 ~l~~I~GPPGTGKT~Tlv 219 (649)
T KOG1803|consen 202 DLLIIHGPPGTGKTRTLV 219 (649)
T ss_pred CceEeeCCCCCCceeeHH
Confidence 456778999999999974
No 230
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=32.08 E-value=28 Score=42.53 Aligned_cols=42 Identities=19% Similarity=0.454 Sum_probs=28.9
Q ss_pred eEeceeeCCCCChHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 52 YSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 52 F~FD~VF~~~asQeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
-+||.+++. .... +.++..+..++...++-||++|+|||+..
T Consensus 151 ~~~~~iiGq----s~~~---~~l~~~ia~~~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 151 RAFSEIVGQ----ERAI---KALLAKVASPFPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred CcHHhceeC----cHHH---HHHHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 466776643 3333 33455556678888999999999999764
No 231
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=32.08 E-value=1.5e+02 Score=24.79 Aligned_cols=32 Identities=31% Similarity=0.519 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002847 345 DQKEVSMKNLQQKMKKIEEERLRVRGEIENLS 376 (874)
Q Consensus 345 ~~k~~~~~~Lqqkik~LeeE~~~lr~EIe~Lk 376 (874)
..+......++..+..|+.++..|+.+|..|+
T Consensus 21 ~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 21 QRKKQREEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455566666666666666666655554
No 232
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=32.01 E-value=19 Score=42.81 Aligned_cols=26 Identities=31% Similarity=0.382 Sum_probs=20.0
Q ss_pred HHHhhcCCCeeEEEeccCCCCcceeccC
Q 002847 75 IKSVLDGYNACIFAYGQTGTGKSFTMEG 102 (874)
Q Consensus 75 V~svLdGyN~TIfAYGQTGSGKTyTM~G 102 (874)
|..+.+|.+. +|++|||||||+...+
T Consensus 105 ip~i~~Grdl--~acAqTGsGKT~aFLi 130 (482)
T KOG0335|consen 105 IPIISGGRDL--MACAQTGSGKTAAFLI 130 (482)
T ss_pred cceeecCCce--EEEccCCCcchHHHHH
Confidence 3445566664 8999999999998755
No 233
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=32.00 E-value=34 Score=40.86 Aligned_cols=18 Identities=33% Similarity=0.451 Sum_probs=15.6
Q ss_pred eeEEEeccCCCCcceecc
Q 002847 84 ACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 84 ~TIfAYGQTGSGKTyTM~ 101 (874)
..|.-.|++|+|||.|+.
T Consensus 257 ~Vi~LvGpnGvGKTTTia 274 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTA 274 (484)
T ss_pred cEEEEECCCCccHHHHHH
Confidence 568889999999999974
No 234
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=31.78 E-value=26 Score=40.95 Aligned_cols=26 Identities=38% Similarity=0.505 Sum_probs=20.5
Q ss_pred HHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 73 PVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 73 PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
..+..+++|.|+. ...+||||||.+.
T Consensus 116 ~ai~~~~~G~dvi--~~apTGSGKTlay 141 (475)
T PRK01297 116 QVLGYTLAGHDAI--GRAQTGTGKTAAF 141 (475)
T ss_pred HHHHHHhCCCCEE--EECCCCChHHHHH
Confidence 4678889999865 4569999999764
No 235
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=31.63 E-value=89 Score=34.05 Aligned_cols=45 Identities=22% Similarity=0.328 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHhhc
Q 002847 352 KNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQEQLEVS 396 (874)
Q Consensus 352 ~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~lqeql~~~ 396 (874)
++++++..+|.+|+.+++.+.+.++++|+.+..+.+.+++.++..
T Consensus 145 ~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l 189 (290)
T COG4026 145 EELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKL 189 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444455556666677777777777777888877777777776654
No 236
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=31.58 E-value=32 Score=43.47 Aligned_cols=32 Identities=19% Similarity=0.236 Sum_probs=22.8
Q ss_pred HHHhhHHHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 67 VFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 67 VF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
||.....+++.+-++- .|+..|+||||||..+
T Consensus 6 i~~~~~~i~~~l~~~~--~vvv~A~TGSGKTt~~ 37 (812)
T PRK11664 6 VAAVLPELLTALKTAP--QVLLKAPTGAGKSTWL 37 (812)
T ss_pred HHHHHHHHHHHHHhCC--CEEEEcCCCCCHHHHH
Confidence 4555556666665544 4678999999999875
No 237
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=31.48 E-value=34 Score=40.68 Aligned_cols=26 Identities=27% Similarity=0.537 Sum_probs=20.5
Q ss_pred HHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 73 PVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 73 PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
..+..++.|.| +++..+||||||...
T Consensus 150 ~aip~il~g~d--viv~ApTGSGKTlay 175 (518)
T PLN00206 150 QAIPAALSGRS--LLVSADTGSGKTASF 175 (518)
T ss_pred HHHHHHhcCCC--EEEEecCCCCccHHH
Confidence 45677889987 567779999999763
No 238
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=31.45 E-value=1.5e+02 Score=36.29 Aligned_cols=15 Identities=33% Similarity=0.485 Sum_probs=9.7
Q ss_pred CCcchhhhhhhhhhh
Q 002847 794 PSPLTLRSQRALFMN 808 (874)
Q Consensus 794 ~~~~~~~~~~~~~~~ 808 (874)
++++.+|.|-.||..
T Consensus 491 sDll~mRRqGRl~wE 505 (907)
T KOG2264|consen 491 SDLLEMRRQGRLFWE 505 (907)
T ss_pred hhHHHHHhhhhhhHH
Confidence 456667777666654
No 239
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=31.37 E-value=38 Score=35.21 Aligned_cols=28 Identities=25% Similarity=0.453 Sum_probs=21.3
Q ss_pred HHHHHhhcCC---CeeEEEeccCCCCcceec
Q 002847 73 PVIKSVLDGY---NACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 73 PlV~svLdGy---N~TIfAYGQTGSGKTyTM 100 (874)
|-++.+|.|- ...+..+|.+|||||...
T Consensus 10 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 40 (225)
T PRK09361 10 KMLDELLGGGFERGTITQIYGPPGSGKTNIC 40 (225)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4467778543 557799999999999764
No 240
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=31.24 E-value=21 Score=34.45 Aligned_cols=14 Identities=43% Similarity=0.679 Sum_probs=12.2
Q ss_pred EEEeccCCCCccee
Q 002847 86 IFAYGQTGTGKSFT 99 (874)
Q Consensus 86 IfAYGQTGSGKTyT 99 (874)
|+..|.+|||||+.
T Consensus 2 i~l~G~~GsGKST~ 15 (150)
T cd02021 2 IVVMGVSGSGKSTV 15 (150)
T ss_pred EEEEcCCCCCHHHH
Confidence 67789999999875
No 241
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=31.11 E-value=1e+02 Score=29.77 Aligned_cols=32 Identities=38% Similarity=0.617 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002847 351 MKNLQQKMKKIEEERLRVRGEIENLSEKLEAL 382 (874)
Q Consensus 351 ~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l 382 (874)
+..|+..+..+.+|+..|+-|.+.|++.|.++
T Consensus 24 ~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 24 LEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555555443
No 242
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=31.10 E-value=17 Score=41.21 Aligned_cols=35 Identities=26% Similarity=0.463 Sum_probs=23.5
Q ss_pred eEEEeccCCCCcceeccC---C------C-------CCCCcHHHHHHHHHH
Q 002847 85 CIFAYGQTGTGKSFTMEG---T------P-------DSPGIVPRAIEAIFK 119 (874)
Q Consensus 85 TIfAYGQTGSGKTyTM~G---s------~-------e~~GIIPRaledLF~ 119 (874)
-...||+|||||++-+-. . + .+.|.||--=...++
T Consensus 89 I~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFItP~~~mIpp~E~~aW~ 139 (369)
T PF02456_consen 89 IGVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFITPQKDMIPPQEITAWE 139 (369)
T ss_pred EEEEECCCCCCHHHHHHHhhhcCcccCCCCceEEECCCCCCCCHHHHHHHH
Confidence 346799999999997731 1 1 245888875555554
No 243
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=31.05 E-value=43 Score=42.60 Aligned_cols=37 Identities=24% Similarity=0.442 Sum_probs=23.9
Q ss_pred hHHHHHhhHHHHHHhhcCCC------eeEEEeccCCCCcceec
Q 002847 64 QDEVFSEVEPVIKSVLDGYN------ACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 64 QeeVF~~V~PlV~svLdGyN------~TIfAYGQTGSGKTyTM 100 (874)
|++.-..|...|..+..|.+ ++++-+|+||+|||+..
T Consensus 571 Q~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 571 QDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETA 613 (852)
T ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHH
Confidence 44444444444444444543 57899999999999874
No 244
>PF13173 AAA_14: AAA domain
Probab=30.86 E-value=21 Score=33.98 Aligned_cols=17 Identities=29% Similarity=0.468 Sum_probs=14.5
Q ss_pred eeEEEeccCCCCcceec
Q 002847 84 ACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 84 ~TIfAYGQTGSGKTyTM 100 (874)
-.++-+|+.|+|||+.+
T Consensus 3 ~~~~l~G~R~vGKTtll 19 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLL 19 (128)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35788999999999975
No 245
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=30.44 E-value=46 Score=41.92 Aligned_cols=18 Identities=33% Similarity=0.468 Sum_probs=15.7
Q ss_pred eeEEEeccCCCCcceecc
Q 002847 84 ACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 84 ~TIfAYGQTGSGKTyTM~ 101 (874)
.+|.-.|++|+|||+|+.
T Consensus 186 ~Vi~lVGpnGvGKTTTia 203 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTA 203 (767)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 578889999999999974
No 246
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=30.40 E-value=48 Score=42.92 Aligned_cols=17 Identities=29% Similarity=0.575 Sum_probs=14.1
Q ss_pred eeEEEeccCCCCcceec
Q 002847 84 ACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 84 ~TIfAYGQTGSGKTyTM 100 (874)
+.+.-+|+||||||..+
T Consensus 27 gl~~I~G~nGaGKSTil 43 (1042)
T TIGR00618 27 PIFLICGKTGAGKTTLL 43 (1042)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56678999999999765
No 247
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=30.26 E-value=26 Score=39.71 Aligned_cols=16 Identities=19% Similarity=0.470 Sum_probs=14.0
Q ss_pred EEEeccCCCCcceecc
Q 002847 86 IFAYGQTGTGKSFTME 101 (874)
Q Consensus 86 IfAYGQTGSGKTyTM~ 101 (874)
++..|+||||||.++.
T Consensus 2 ~lv~g~tGsGKt~~~v 17 (384)
T cd01126 2 VLVFAPTRSGKGVGFV 17 (384)
T ss_pred eeEecCCCCCCccEEE
Confidence 5789999999999873
No 248
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=30.16 E-value=24 Score=38.73 Aligned_cols=21 Identities=33% Similarity=0.613 Sum_probs=18.5
Q ss_pred cCCCeeEEEeccCCCCcceec
Q 002847 80 DGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 80 dGyN~TIfAYGQTGSGKTyTM 100 (874)
.|+...|+..|++|+|||..+
T Consensus 1 ~g~~f~I~vvG~sg~GKSTli 21 (276)
T cd01850 1 KGFQFNIMVVGESGLGKSTFI 21 (276)
T ss_pred CCcEEEEEEEcCCCCCHHHHH
Confidence 488999999999999998753
No 249
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=30.05 E-value=40 Score=37.18 Aligned_cols=35 Identities=20% Similarity=0.370 Sum_probs=22.6
Q ss_pred ChHHHHHhhHHHHHHhhcCC-CeeEEEeccCCCCcceec
Q 002847 63 SQDEVFSEVEPVIKSVLDGY-NACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 63 sQeeVF~~V~PlV~svLdGy-N~TIfAYGQTGSGKTyTM 100 (874)
.|+.+.+.+... +-.|. ...++-||+.|+|||.+.
T Consensus 18 g~~~~~~~l~~~---~~~~~~~~~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 18 GQEHIVQTLKNA---IKNGRIAHAYLFSGPRGTGKTSIA 53 (355)
T ss_pred CcHHHHHHHHHH---HHcCCCCeEEEEECCCCCCHHHHH
Confidence 455554443333 33443 457899999999999765
No 250
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=29.85 E-value=39 Score=38.27 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=21.3
Q ss_pred HHHhhcCCCeeEEEeccCCCCcceec
Q 002847 75 IKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 75 V~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
++.+.+|-+..++..++||||||...
T Consensus 6 ~~~~~~~~~~~~~i~apTGsGKT~~~ 31 (357)
T TIGR03158 6 FEALQSKDADIIFNTAPTGAGKTLAW 31 (357)
T ss_pred HHHHHcCCCCEEEEECCCCCCHHHHH
Confidence 45667888878888999999999873
No 251
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=29.77 E-value=28 Score=43.46 Aligned_cols=43 Identities=21% Similarity=0.417 Sum_probs=30.6
Q ss_pred CCCeeEEEeccCCCCcceeccCCCC-----------------CCCcHHHHHHHHHHHHHh
Q 002847 81 GYNACIFAYGQTGTGKSFTMEGTPD-----------------SPGIVPRAIEAIFKQAME 123 (874)
Q Consensus 81 GyN~TIfAYGQTGSGKTyTM~Gs~e-----------------~~GIIPRaledLF~~i~e 123 (874)
-...-|+-||++|+||||...--.. --|--...+++||.+++.
T Consensus 699 r~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~ 758 (952)
T KOG0735|consen 699 RLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQS 758 (952)
T ss_pred ccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhc
Confidence 3456699999999999997633111 126667788999988754
No 252
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=29.73 E-value=23 Score=35.37 Aligned_cols=14 Identities=36% Similarity=0.653 Sum_probs=12.3
Q ss_pred EEEeccCCCCccee
Q 002847 86 IFAYGQTGTGKSFT 99 (874)
Q Consensus 86 IfAYGQTGSGKTyT 99 (874)
|+.+|.+|||||+.
T Consensus 2 I~i~G~pGsGKst~ 15 (194)
T cd01428 2 ILLLGPPGSGKGTQ 15 (194)
T ss_pred EEEECCCCCCHHHH
Confidence 78899999999864
No 253
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=29.72 E-value=41 Score=42.40 Aligned_cols=36 Identities=19% Similarity=0.433 Sum_probs=26.8
Q ss_pred HHHHHhhHHHHHHhh-cCCCeeEEEeccCCCCcceec
Q 002847 65 DEVFSEVEPVIKSVL-DGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 65 eeVF~~V~PlV~svL-dGyN~TIfAYGQTGSGKTyTM 100 (874)
-.||.-.......++ .|.|-||+.-|.+|||||.|.
T Consensus 67 PHifaiA~~Ay~~m~~~~~~QsIiiSGESGAGKTe~t 103 (767)
T cd01386 67 PHIYSLAQTAYRALLETRRDQSIIFLGRSGAGKTTSC 103 (767)
T ss_pred CCHHHHHHHHHHHHHHcCCCceEEEecCCCCCcHHHH
Confidence 346664433444443 699999999999999999985
No 254
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.62 E-value=41 Score=38.14 Aligned_cols=41 Identities=17% Similarity=0.335 Sum_probs=25.1
Q ss_pred EeceeeCCCCChHHHHHhhHHHHHHhhcC-CCeeEEEeccCCCCcceec
Q 002847 53 SFDKVFHPGSSQDEVFSEVEPVIKSVLDG-YNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 53 ~FD~VF~~~asQeeVF~~V~PlV~svLdG-yN~TIfAYGQTGSGKTyTM 100 (874)
+||.|. .|+.+-+.+ ...+-.| ..-+++-||+.|+|||++.
T Consensus 14 ~~~~ii----Gq~~~~~~l---~~~~~~~~~~h~~L~~Gp~G~GKTtla 55 (363)
T PRK14961 14 YFRDII----GQKHIVTAI---SNGLSLGRIHHAWLLSGTRGVGKTTIA 55 (363)
T ss_pred chhhcc----ChHHHHHHH---HHHHHcCCCCeEEEEecCCCCCHHHHH
Confidence 355554 445544333 2333333 4556899999999999865
No 255
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.50 E-value=31 Score=41.31 Aligned_cols=42 Identities=24% Similarity=0.379 Sum_probs=26.5
Q ss_pred EeceeeCCCCChHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 53 SFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 53 ~FD~VF~~~asQeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
+||.|. .|+.+...+...+.. ......++-||+.|+|||.+.
T Consensus 12 ~~~dvv----Gq~~v~~~L~~~i~~--~~l~ha~Lf~GppGtGKTTlA 53 (504)
T PRK14963 12 TFDEVV----GQEHVKEVLLAALRQ--GRLGHAYLFSGPRGVGKTTTA 53 (504)
T ss_pred CHHHhc----ChHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHH
Confidence 355554 456665555444443 223445799999999999875
No 256
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=29.40 E-value=23 Score=33.90 Aligned_cols=15 Identities=33% Similarity=0.483 Sum_probs=13.0
Q ss_pred eEEEeccCCCCccee
Q 002847 85 CIFAYGQTGTGKSFT 99 (874)
Q Consensus 85 TIfAYGQTGSGKTyT 99 (874)
+|+.+|..|||||+.
T Consensus 1 ~i~l~G~~GsGKstl 15 (154)
T cd00464 1 NIVLIGMMGAGKTTV 15 (154)
T ss_pred CEEEEcCCCCCHHHH
Confidence 478899999999875
No 257
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=29.30 E-value=29 Score=41.48 Aligned_cols=125 Identities=15% Similarity=0.220 Sum_probs=61.2
Q ss_pred ceeEeceeeCCCCChHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCcceeccCCCCCCCcHHHHHHHHHHHHHhcCCeeE
Q 002847 50 KNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAMESNHAFR 129 (874)
Q Consensus 50 k~F~FD~VF~~~asQeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM~Gs~e~~GIIPRaledLF~~i~e~~~~f~ 129 (874)
..+.||.+.+....-..+.+.++. +...+..|+-+|.+||||++. .+++. ......... -
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~-----~A~~~~pvlI~GE~GtGK~~l-----------A~aiH---~~s~r~~~p-f 258 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARK-----LAMLDAPLLITGDTGTGKDLL-----------AYACH---LRSPRGKKP-F 258 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHH-----HhCCCCCEEEECCCCccHHHH-----------HHHHH---HhCCCCCCC-e
Confidence 457899888765433334333322 233577899999999999764 33332 211111122 2
Q ss_pred EEEEEEEEecceee-cccCCCCCCCCC--CCCCcceeeecCCCcEEecCcEEEEeCCHHHHHHHHHHhc
Q 002847 130 ISFSMLEIYLGSLK-DLLVTQPTKATD--PLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGC 195 (874)
Q Consensus 130 VsVS~lEIYNEkV~-DLL~~~~~~~~~--~~~~~L~I~ed~~ggv~V~gLtev~V~S~eEal~lL~~G~ 195 (874)
+.+.+-.+..+.+- .|+...+...+. .....+ +.....|.+++.++.+....--..++++|..+.
T Consensus 259 v~inca~~~~~~~e~elFG~~~~~~~~~~~~~~g~-~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~ 326 (520)
T PRK10820 259 LALNCASIPDDVVESELFGHAPGAYPNALEGKKGF-FEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGT 326 (520)
T ss_pred EEeccccCCHHHHHHHhcCCCCCCcCCcccCCCCh-hhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCC
Confidence 23333333222111 133211110000 000111 112335567788887777666677777777654
No 258
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=29.10 E-value=44 Score=41.32 Aligned_cols=36 Identities=22% Similarity=0.509 Sum_probs=26.3
Q ss_pred HHHHHhhHHHHHHhh-cCCCeeEEEeccCCCCcceec
Q 002847 65 DEVFSEVEPVIKSVL-DGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 65 eeVF~~V~PlV~svL-dGyN~TIfAYGQTGSGKTyTM 100 (874)
..+|.-.......++ .+.|-||+.-|.+|||||.|.
T Consensus 67 PHifavA~~Ay~~m~~~~~~QsIiisGESGsGKTet~ 103 (653)
T cd01379 67 PHIFAIADAAYQSLVTYNQDQCIVISGESGSGKTESA 103 (653)
T ss_pred CcHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 346654333344443 588999999999999999986
No 259
>PRK07261 topology modulation protein; Provisional
Probab=29.00 E-value=24 Score=35.63 Aligned_cols=14 Identities=43% Similarity=0.553 Sum_probs=12.3
Q ss_pred EEEeccCCCCccee
Q 002847 86 IFAYGQTGTGKSFT 99 (874)
Q Consensus 86 IfAYGQTGSGKTyT 99 (874)
|+..|.+|||||+-
T Consensus 3 i~i~G~~GsGKSTl 16 (171)
T PRK07261 3 IAIIGYSGSGKSTL 16 (171)
T ss_pred EEEEcCCCCCHHHH
Confidence 67889999999875
No 260
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=29.00 E-value=42 Score=34.66 Aligned_cols=27 Identities=30% Similarity=0.492 Sum_probs=20.2
Q ss_pred HHHHhhc-CC--CeeEEEeccCCCCcceec
Q 002847 74 VIKSVLD-GY--NACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 74 lV~svLd-Gy--N~TIfAYGQTGSGKTyTM 100 (874)
-++.++. |+ ...+..+|.+|||||...
T Consensus 7 ~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (218)
T cd01394 7 GLDELLGGGVERGTVTQVYGPPGTGKTNIA 36 (218)
T ss_pred HHHHHhcCCccCCeEEEEECCCCCCHHHHH
Confidence 4577775 44 355789999999999864
No 261
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=28.91 E-value=1.2e+02 Score=31.53 Aligned_cols=11 Identities=55% Similarity=0.486 Sum_probs=5.0
Q ss_pred HHHHHHHHHHH
Q 002847 266 LSALGDVIYAL 276 (874)
Q Consensus 266 LsALg~VI~AL 276 (874)
|.|+..|=..|
T Consensus 30 L~AFeEvg~~L 40 (161)
T TIGR02894 30 LSAFEEVGRAL 40 (161)
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 262
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=28.91 E-value=2.3e+02 Score=24.28 Aligned_cols=42 Identities=24% Similarity=0.381 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH
Q 002847 351 MKNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQEQ 392 (874)
Q Consensus 351 ~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~lqeq 392 (874)
...-...+..|+.++..|..+...|...+..|......+..+
T Consensus 21 R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 21 RQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344556677788888888888888888888877776666554
No 263
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=28.82 E-value=32 Score=41.73 Aligned_cols=39 Identities=15% Similarity=0.261 Sum_probs=29.0
Q ss_pred eEEEeccCCCCcceeccC---CCC---CCCcHHHHHHHHHHHHHh
Q 002847 85 CIFAYGQTGTGKSFTMEG---TPD---SPGIVPRAIEAIFKQAME 123 (874)
Q Consensus 85 TIfAYGQTGSGKTyTM~G---s~e---~~GIIPRaledLF~~i~e 123 (874)
-||..|+|.|||||--.- +.. -.|=+-....++|++++.
T Consensus 193 Ii~H~GPTNSGKTy~ALqrl~~aksGvycGPLrLLA~EV~~r~na 237 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYRALQRLKSAKSGVYCGPLRLLAHEVYDRLNA 237 (700)
T ss_pred EEEEeCCCCCchhHHHHHHHhhhccceecchHHHHHHHHHHHhhh
Confidence 489999999999997642 221 246677888899988754
No 264
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=28.56 E-value=38 Score=35.25 Aligned_cols=25 Identities=24% Similarity=0.555 Sum_probs=19.2
Q ss_pred HHHhhcC-C--CeeEEEeccCCCCccee
Q 002847 75 IKSVLDG-Y--NACIFAYGQTGTGKSFT 99 (874)
Q Consensus 75 V~svLdG-y--N~TIfAYGQTGSGKTyT 99 (874)
++.++.| + +.+++.+|++|||||.-
T Consensus 8 LD~~l~GGip~gs~~li~G~~GsGKT~l 35 (226)
T PF06745_consen 8 LDELLGGGIPKGSVVLISGPPGSGKTTL 35 (226)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCcHHH
Confidence 4666643 3 78899999999999853
No 265
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=28.36 E-value=52 Score=38.89 Aligned_cols=17 Identities=35% Similarity=0.714 Sum_probs=14.6
Q ss_pred eeEEEeccCCCCcceec
Q 002847 84 ACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 84 ~TIfAYGQTGSGKTyTM 100 (874)
..|+..|++|+|||+|.
T Consensus 224 ~vi~lvGptGvGKTTta 240 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSI 240 (432)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45778899999999985
No 266
>CHL00176 ftsH cell division protein; Validated
Probab=28.28 E-value=36 Score=42.00 Aligned_cols=17 Identities=29% Similarity=0.536 Sum_probs=14.7
Q ss_pred eeEEEeccCCCCcceec
Q 002847 84 ACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 84 ~TIfAYGQTGSGKTyTM 100 (874)
..|+-||++|+|||+..
T Consensus 217 ~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLA 233 (638)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35899999999999874
No 267
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=28.25 E-value=1.2e+02 Score=26.31 Aligned_cols=31 Identities=29% Similarity=0.458 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 002847 353 NLQQKMKKIEEERLRVRGEIENLSEKLEALT 383 (874)
Q Consensus 353 ~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~ 383 (874)
+++.++..++..+..++.|++++++.++.+.
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i~ 34 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEKIE 34 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444454555445555555555555444443
No 268
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=28.16 E-value=40 Score=36.42 Aligned_cols=25 Identities=28% Similarity=0.542 Sum_probs=17.0
Q ss_pred HHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 74 VIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 74 lV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
++..+..|.+ |+-+|++|+|||...
T Consensus 14 ~l~~l~~g~~--vLL~G~~GtGKT~lA 38 (262)
T TIGR02640 14 ALRYLKSGYP--VHLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHhcCCe--EEEEcCCCCCHHHHH
Confidence 3344445554 566899999999753
No 269
>PF02202 Tachykinin: Tachykinin family; InterPro: IPR002040 This family includes peptides, which belong to the tachykinin family. Tachykinins [, , ] are a group of biologically active peptides which excite neurons, evoke behavioral responses, are potent vasodilatators and contract (directly or indirectly) many smooth muscles. Tachykinins, like most other active peptides, are synthesized as larger protein precursors that are enzymatically converted to their mature forms. Tachykinins are from ten to twelve residues long.; GO: 0007217 tachykinin receptor signaling pathway, 0007268 synaptic transmission; PDB: 1MYU_A 1N6T_A 2GFR_A.
Probab=28.15 E-value=20 Score=21.69 Aligned_cols=7 Identities=71% Similarity=1.037 Sum_probs=4.1
Q ss_pred ccccccC
Q 002847 867 DFFHGLM 873 (874)
Q Consensus 867 ~~~~~~~ 873 (874)
|=|||||
T Consensus 5 d~F~GLM 11 (11)
T PF02202_consen 5 DQFYGLM 11 (11)
T ss_dssp HHHCCC-
T ss_pred ccceecC
Confidence 4577777
No 270
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=28.14 E-value=54 Score=34.82 Aligned_cols=29 Identities=24% Similarity=0.296 Sum_probs=22.8
Q ss_pred hHHHHHHhhc--CCCeeEEEeccCCCCccee
Q 002847 71 VEPVIKSVLD--GYNACIFAYGQTGTGKSFT 99 (874)
Q Consensus 71 V~PlV~svLd--GyN~TIfAYGQTGSGKTyT 99 (874)
+..+.+.+.+ .-...|.-+|..|+|||..
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~L 35 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTL 35 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEEESTTSSHHHH
T ss_pred HHHHHHHhhCCCCCeEEEEEEcCCcCCccee
Confidence 4556666666 6678899999999999975
No 271
>PRK08118 topology modulation protein; Reviewed
Probab=27.86 E-value=26 Score=35.37 Aligned_cols=13 Identities=46% Similarity=0.685 Sum_probs=11.8
Q ss_pred EEEeccCCCCcce
Q 002847 86 IFAYGQTGTGKSF 98 (874)
Q Consensus 86 IfAYGQTGSGKTy 98 (874)
|+..|+.|||||+
T Consensus 4 I~I~G~~GsGKST 16 (167)
T PRK08118 4 IILIGSGGSGKST 16 (167)
T ss_pred EEEECCCCCCHHH
Confidence 7889999999995
No 272
>CHL00181 cbbX CbbX; Provisional
Probab=27.80 E-value=25 Score=38.77 Aligned_cols=14 Identities=36% Similarity=0.491 Sum_probs=12.7
Q ss_pred EEEeccCCCCccee
Q 002847 86 IFAYGQTGTGKSFT 99 (874)
Q Consensus 86 IfAYGQTGSGKTyT 99 (874)
|+-||++|||||+.
T Consensus 62 ill~G~pGtGKT~l 75 (287)
T CHL00181 62 MSFTGSPGTGKTTV 75 (287)
T ss_pred EEEECCCCCCHHHH
Confidence 77899999999986
No 273
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=27.75 E-value=1.1e+02 Score=37.66 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=15.8
Q ss_pred CcHHHHHHHHHHHHHhcCCeeEE
Q 002847 108 GIVPRAIEAIFKQAMESNHAFRI 130 (874)
Q Consensus 108 GIIPRaledLF~~i~e~~~~f~V 130 (874)
|.|.++.++|=+.+...+-.|.+
T Consensus 164 ~av~~~~reIee~L~~agldyDl 186 (652)
T COG2433 164 GAVKRVVREIEEKLDEAGLDYDL 186 (652)
T ss_pred HHHHHHHHHHHHHHHhcCCCcee
Confidence 78888888887777665555443
No 274
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=27.74 E-value=28 Score=34.53 Aligned_cols=15 Identities=33% Similarity=0.430 Sum_probs=12.7
Q ss_pred EEEeccCCCCcceec
Q 002847 86 IFAYGQTGTGKSFTM 100 (874)
Q Consensus 86 IfAYGQTGSGKTyTM 100 (874)
++.+|++|+|||...
T Consensus 2 ~li~G~~G~GKT~l~ 16 (187)
T cd01124 2 TLLSGGPGTGKTTFA 16 (187)
T ss_pred EEEEcCCCCCHHHHH
Confidence 678999999999753
No 275
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=27.55 E-value=79 Score=35.41 Aligned_cols=41 Identities=29% Similarity=0.434 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 002847 344 RDQKEVSMKNLQQKMKKIEEERLRVRGEIENLSEKLEALTR 384 (874)
Q Consensus 344 ~~~k~~~~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~ 384 (874)
-.+|++.+.+|+.++++-++.+..-..||++|+.+|...++
T Consensus 63 LQQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrE 103 (305)
T PF15290_consen 63 LQQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMRE 103 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 46788888888888888777777766778888877766543
No 276
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=27.46 E-value=24 Score=38.76 Aligned_cols=15 Identities=33% Similarity=0.441 Sum_probs=13.4
Q ss_pred eEEEeccCCCCccee
Q 002847 85 CIFAYGQTGTGKSFT 99 (874)
Q Consensus 85 TIfAYGQTGSGKTyT 99 (874)
-|+-+|++|||||+.
T Consensus 60 ~vll~G~pGTGKT~l 74 (284)
T TIGR02880 60 HMSFTGNPGTGKTTV 74 (284)
T ss_pred eEEEEcCCCCCHHHH
Confidence 588999999999976
No 277
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=27.45 E-value=42 Score=34.60 Aligned_cols=28 Identities=21% Similarity=0.406 Sum_probs=21.1
Q ss_pred HHHHHhhcC-C--CeeEEEeccCCCCcceec
Q 002847 73 PVIKSVLDG-Y--NACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 73 PlV~svLdG-y--N~TIfAYGQTGSGKTyTM 100 (874)
+-++.+|.| + ...+.-+|++|+|||..+
T Consensus 6 ~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~ 36 (226)
T cd01393 6 KALDELLGGGIPTGRITEIFGEFGSGKTQLC 36 (226)
T ss_pred HHHHHHhCCCCcCCcEEEEeCCCCCChhHHH
Confidence 456777754 3 456788999999999864
No 278
>PHA01747 putative ATP-dependent protease
Probab=27.35 E-value=38 Score=39.45 Aligned_cols=30 Identities=27% Similarity=0.395 Sum_probs=26.1
Q ss_pred hHHHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 71 VEPVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 71 V~PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
+-|+|+.-..+-|.-++=.|+.||||||+.
T Consensus 178 LiPlVE~~~~~~NyNliELgPRGTGKS~~f 207 (425)
T PHA01747 178 LLPLFTSPVSKRPVHIIELSNRGTGKTTTF 207 (425)
T ss_pred hhhheeccCCCCCeeEEEecCCCCChhhHH
Confidence 568888777888999999999999999974
No 279
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=27.32 E-value=24 Score=40.75 Aligned_cols=18 Identities=39% Similarity=0.580 Sum_probs=14.7
Q ss_pred CeeEEEeccCCCCcceec
Q 002847 83 NACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 83 N~TIfAYGQTGSGKTyTM 100 (874)
+--++.+|+||||||..|
T Consensus 42 ~~h~~i~g~tGsGKt~~i 59 (410)
T cd01127 42 EAHTMIIGTTGTGKTTQI 59 (410)
T ss_pred hccEEEEcCCCCCHHHHH
Confidence 446789999999998754
No 280
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=27.30 E-value=40 Score=37.19 Aligned_cols=36 Identities=28% Similarity=0.345 Sum_probs=23.7
Q ss_pred CCCChHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 60 PGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 60 ~~asQeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
+-..|.++-+.|. +.+-+|.+ ++.=.+||+|||.+.
T Consensus 9 ~r~~Q~~~m~~v~---~~~~~~~~--~~~eapTGtGKTl~~ 44 (289)
T smart00489 9 PYPIQYEFMEELK---RVLDRGKI--GILESPTGTGKTLSL 44 (289)
T ss_pred CCHHHHHHHHHHH---HHHHcCCc--EEEECCCCcchhHHH
Confidence 4556766655543 34446654 466679999999885
No 281
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=27.30 E-value=40 Score=37.19 Aligned_cols=36 Identities=28% Similarity=0.345 Sum_probs=23.7
Q ss_pred CCCChHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 60 PGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 60 ~~asQeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
+-..|.++-+.|. +.+-+|.+ ++.=.+||+|||.+.
T Consensus 9 ~r~~Q~~~m~~v~---~~~~~~~~--~~~eapTGtGKTl~~ 44 (289)
T smart00488 9 PYPIQYEFMEELK---RVLDRGKI--GILESPTGTGKTLSL 44 (289)
T ss_pred CCHHHHHHHHHHH---HHHHcCCc--EEEECCCCcchhHHH
Confidence 4556766655543 34446654 466679999999885
No 282
>PRK10884 SH3 domain-containing protein; Provisional
Probab=27.23 E-value=1.8e+02 Score=31.11 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q 002847 353 NLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQEQL 393 (874)
Q Consensus 353 ~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~lqeql 393 (874)
++++++...+.++..|+.+.++|+++++.++.++..++.++
T Consensus 122 ~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~ 162 (206)
T PRK10884 122 EMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQL 162 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555555555555554444444433
No 283
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=27.14 E-value=1.8e+02 Score=34.84 Aligned_cols=26 Identities=27% Similarity=0.454 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002847 352 KNLQQKMKKIEEERLRVRGEIENLSE 377 (874)
Q Consensus 352 ~~Lqqkik~LeeE~~~lr~EIe~Lk~ 377 (874)
++++.++..+..+++.|++|.+.|++
T Consensus 69 k~~r~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 69 KELRKRLAKLISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 284
>PRK05580 primosome assembly protein PriA; Validated
Probab=26.82 E-value=39 Score=41.80 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=17.9
Q ss_pred HHHhhcC-CCeeEEEeccCCCCcceec
Q 002847 75 IKSVLDG-YNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 75 V~svLdG-yN~TIfAYGQTGSGKTyTM 100 (874)
++.+++| ....++.+|+||||||...
T Consensus 153 i~~i~~~~~~~~~Ll~~~TGSGKT~v~ 179 (679)
T PRK05580 153 VEAIRAAAGFSPFLLDGVTGSGKTEVY 179 (679)
T ss_pred HHHHHhccCCCcEEEECCCCChHHHHH
Confidence 3334443 3345899999999999765
No 285
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=26.69 E-value=49 Score=40.88 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=15.7
Q ss_pred CCCeeEEEeccCCCCcceec
Q 002847 81 GYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 81 GyN~TIfAYGQTGSGKTyTM 100 (874)
++..-++..|+||||||...
T Consensus 280 ~~~~~~Ll~~~TGSGKT~va 299 (681)
T PRK10917 280 PKPMNRLLQGDVGSGKTVVA 299 (681)
T ss_pred cCCceEEEECCCCCcHHHHH
Confidence 33446899999999999764
No 286
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=26.66 E-value=24 Score=34.67 Aligned_cols=14 Identities=36% Similarity=0.541 Sum_probs=11.1
Q ss_pred EEEeccCCCCccee
Q 002847 86 IFAYGQTGTGKSFT 99 (874)
Q Consensus 86 IfAYGQTGSGKTyT 99 (874)
|+..|.+|||||+.
T Consensus 1 i~l~G~~GsGKSTl 14 (163)
T TIGR01313 1 FVLMGVAGSGKSTI 14 (163)
T ss_pred CEEECCCCCCHHHH
Confidence 35679999999854
No 287
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=26.63 E-value=46 Score=40.09 Aligned_cols=26 Identities=38% Similarity=0.569 Sum_probs=20.3
Q ss_pred HHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 73 PVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 73 PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
.+|..+++|.|+ ++..+||+|||.+.
T Consensus 20 ~~i~~il~g~dv--lv~~PTG~GKTl~y 45 (591)
T TIGR01389 20 EIISHVLDGRDV--LVVMPTGGGKSLCY 45 (591)
T ss_pred HHHHHHHcCCCE--EEEcCCCccHhHHH
Confidence 456778899985 55669999999874
No 288
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=26.60 E-value=24 Score=39.49 Aligned_cols=18 Identities=28% Similarity=0.464 Sum_probs=15.1
Q ss_pred eeEEEeccCCCCcceecc
Q 002847 84 ACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 84 ~TIfAYGQTGSGKTyTM~ 101 (874)
.+|+-.|.||||||+.|.
T Consensus 144 ~siii~G~t~sGKTt~ln 161 (312)
T COG0630 144 KSIIICGGTASGKTTLLN 161 (312)
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 357888999999999874
No 289
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=26.47 E-value=2.9e+02 Score=24.98 Aligned_cols=30 Identities=30% Similarity=0.331 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002847 353 NLQQKMKKIEEERLRVRGEIENLSEKLEAL 382 (874)
Q Consensus 353 ~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l 382 (874)
.|+.++..+-+.+..|+.++++|+++-..+
T Consensus 8 ~LE~ki~~aveti~~Lq~e~eeLke~n~~L 37 (72)
T PF06005_consen 8 QLEEKIQQAVETIALLQMENEELKEKNNEL 37 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 444444444444444444444444443333
No 290
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=26.39 E-value=92 Score=37.97 Aligned_cols=10 Identities=30% Similarity=0.604 Sum_probs=5.9
Q ss_pred cccccccCCC
Q 002847 292 QVLKDSLGED 301 (874)
Q Consensus 292 rLLqDSLGGN 301 (874)
..|+|++..|
T Consensus 52 t~~qdA~~~~ 61 (907)
T KOG2264|consen 52 TTLQDALKQN 61 (907)
T ss_pred ecccccchhc
Confidence 3567776554
No 291
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=26.36 E-value=54 Score=41.63 Aligned_cols=37 Identities=30% Similarity=0.392 Sum_probs=24.0
Q ss_pred hHHHHHhhHHHHHHhhcCC------CeeEEEeccCCCCcceec
Q 002847 64 QDEVFSEVEPVIKSVLDGY------NACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 64 QeeVF~~V~PlV~svLdGy------N~TIfAYGQTGSGKTyTM 100 (874)
|.+.-..|...|..+..|. .++++-+|++|+|||++.
T Consensus 570 Q~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA 612 (852)
T TIGR03346 570 QDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELA 612 (852)
T ss_pred ChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHH
Confidence 4444444444455544443 467888999999999763
No 292
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=26.12 E-value=1.1e+02 Score=36.99 Aligned_cols=44 Identities=20% Similarity=0.352 Sum_probs=36.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh
Q 002847 343 ARDQKEVSMKNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPA 386 (874)
Q Consensus 343 ~~~~k~~~~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~ 386 (874)
.+.++...+..|+..+++|..|++.|+.|...|+.+|+.+..+.
T Consensus 296 SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En 339 (655)
T KOG4343|consen 296 SRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSEN 339 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcC
Confidence 35556667888999999999999999999999999999886644
No 293
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=26.10 E-value=28 Score=34.74 Aligned_cols=16 Identities=31% Similarity=0.652 Sum_probs=13.7
Q ss_pred eEEEeccCCCCcceec
Q 002847 85 CIFAYGQTGTGKSFTM 100 (874)
Q Consensus 85 TIfAYGQTGSGKTyTM 100 (874)
.|+..|++|||||..+
T Consensus 3 ~~~i~G~sGsGKttl~ 18 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLL 18 (179)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999999875
No 294
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=26.03 E-value=45 Score=40.55 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=18.5
Q ss_pred HHHHhhcCCCeeEEEeccCCCCccee
Q 002847 74 VIKSVLDGYNACIFAYGQTGTGKSFT 99 (874)
Q Consensus 74 lV~svLdGyN~TIfAYGQTGSGKTyT 99 (874)
+|..++.|.++. +.++||+|||.+
T Consensus 33 ai~~il~g~dvl--v~apTGsGKTl~ 56 (607)
T PRK11057 33 IIDAVLSGRDCL--VVMPTGGGKSLC 56 (607)
T ss_pred HHHHHHcCCCEE--EEcCCCchHHHH
Confidence 456778898864 457999999965
No 295
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=25.94 E-value=26 Score=43.53 Aligned_cols=19 Identities=47% Similarity=0.660 Sum_probs=15.5
Q ss_pred CeeEEEeccCCCCcceecc
Q 002847 83 NACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 83 N~TIfAYGQTGSGKTyTM~ 101 (874)
|..++..|.||||||++|-
T Consensus 430 n~n~~I~G~tGsGKS~~~~ 448 (797)
T TIGR02746 430 NYNIAVVGGSGAGKSFFMQ 448 (797)
T ss_pred ccceEEEcCCCCCHHHHHH
Confidence 4456888999999999973
No 296
>PRK08233 hypothetical protein; Provisional
Probab=25.94 E-value=30 Score=34.17 Aligned_cols=16 Identities=25% Similarity=0.229 Sum_probs=12.4
Q ss_pred eEEEeccCCCCcceec
Q 002847 85 CIFAYGQTGTGKSFTM 100 (874)
Q Consensus 85 TIfAYGQTGSGKTyTM 100 (874)
.|.--|++|||||+..
T Consensus 5 iI~I~G~~GsGKtTla 20 (182)
T PRK08233 5 IITIAAVSGGGKTTLT 20 (182)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3555799999999764
No 297
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=25.86 E-value=31 Score=32.67 Aligned_cols=14 Identities=43% Similarity=0.548 Sum_probs=12.0
Q ss_pred EEEeccCCCCccee
Q 002847 86 IFAYGQTGTGKSFT 99 (874)
Q Consensus 86 IfAYGQTGSGKTyT 99 (874)
|+-.|++|||||..
T Consensus 2 I~i~G~~GsGKst~ 15 (147)
T cd02020 2 IAIDGPAGSGKSTV 15 (147)
T ss_pred EEEECCCCCCHHHH
Confidence 67789999999875
No 298
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=25.83 E-value=26 Score=32.01 Aligned_cols=15 Identities=33% Similarity=0.656 Sum_probs=12.7
Q ss_pred EEEeccCCCCcceec
Q 002847 86 IFAYGQTGTGKSFTM 100 (874)
Q Consensus 86 IfAYGQTGSGKTyTM 100 (874)
|+..|..|+|||..+
T Consensus 2 I~V~G~~g~GKTsLi 16 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLI 16 (119)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECcCCCCHHHHH
Confidence 678899999999753
No 299
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=25.81 E-value=1.3e+02 Score=26.90 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHH
Q 002847 354 LQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQE 391 (874)
Q Consensus 354 Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~lqe 391 (874)
|..++..|-....+++.|...|+.++..+..+...+.+
T Consensus 5 Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~e 42 (65)
T TIGR02449 5 LAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLE 42 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444333
No 300
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=25.58 E-value=2.3e+02 Score=27.85 Aligned_cols=32 Identities=25% Similarity=0.512 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCChhhHHHHHh
Q 002847 363 EERLRVRGEIENLSEKLEALTRPAHSFQEQLE 394 (874)
Q Consensus 363 eE~~~lr~EIe~Lk~~Le~l~~~~~~lqeql~ 394 (874)
.+...+..++..++.+++.|..++.-|..||+
T Consensus 98 ~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 98 EQKEQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344445555555555555555555555444
No 301
>PHA02624 large T antigen; Provisional
Probab=25.53 E-value=53 Score=40.52 Aligned_cols=27 Identities=15% Similarity=0.289 Sum_probs=22.1
Q ss_pred HHHHhhcCCCe--eEEEeccCCCCcceec
Q 002847 74 VIKSVLDGYNA--CIFAYGQTGTGKSFTM 100 (874)
Q Consensus 74 lV~svLdGyN~--TIfAYGQTGSGKTyTM 100 (874)
+++.++.|.-. ||+-||+.|||||+-.
T Consensus 420 ~lk~~l~giPKk~~il~~GPpnTGKTtf~ 448 (647)
T PHA02624 420 ILKLIVENVPKRRYWLFKGPVNSGKTTLA 448 (647)
T ss_pred HHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 36677788766 9999999999999754
No 302
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=25.51 E-value=29 Score=30.31 Aligned_cols=15 Identities=33% Similarity=0.556 Sum_probs=12.5
Q ss_pred EEEeccCCCCcceec
Q 002847 86 IFAYGQTGTGKSFTM 100 (874)
Q Consensus 86 IfAYGQTGSGKTyTM 100 (874)
.+-.|++|||||..|
T Consensus 26 tli~G~nGsGKSTll 40 (62)
T PF13555_consen 26 TLITGPNGSGKSTLL 40 (62)
T ss_pred EEEECCCCCCHHHHH
Confidence 567799999999765
No 303
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=25.35 E-value=1.2e+02 Score=35.02 Aligned_cols=47 Identities=30% Similarity=0.673 Sum_probs=34.8
Q ss_pred HHHHhhcCC---CeeEEEeccCCCCcc---------------eeccCCC--CCC-CcHHHHHHHHHHH
Q 002847 74 VIKSVLDGY---NACIFAYGQTGTGKS---------------FTMEGTP--DSP-GIVPRAIEAIFKQ 120 (874)
Q Consensus 74 lV~svLdGy---N~TIfAYGQTGSGKT---------------yTM~Gs~--e~~-GIIPRaledLF~~ 120 (874)
.+.++-.|+ .-.++-.|+.|+||| ||+.|+| ++| +|+|.-+++.|..
T Consensus 76 ~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm~e~PL~L~P~~~r~~~~~ 143 (358)
T PF08298_consen 76 YFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPMHEEPLHLFPKELRREFED 143 (358)
T ss_pred HHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCccccChhhhCCHhHHHHHHH
Confidence 455665666 456888999999997 6777776 333 8999998888753
No 304
>PRK01172 ski2-like helicase; Provisional
Probab=25.25 E-value=46 Score=40.79 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=17.5
Q ss_pred HHHhhcCCCeeEEEeccCCCCccee
Q 002847 75 IKSVLDGYNACIFAYGQTGTGKSFT 99 (874)
Q Consensus 75 V~svLdGyN~TIfAYGQTGSGKTyT 99 (874)
+..+++|.| ++..++||||||..
T Consensus 31 i~~l~~~~n--vlv~apTGSGKTl~ 53 (674)
T PRK01172 31 IEQLRKGEN--VIVSVPTAAGKTLI 53 (674)
T ss_pred HHHHhcCCc--EEEECCCCchHHHH
Confidence 344567776 57778999999975
No 305
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=25.21 E-value=60 Score=33.08 Aligned_cols=104 Identities=19% Similarity=0.173 Sum_probs=51.7
Q ss_pred cCCCeeEEEeccCCCCcceeccCCCCCCCcHHHHHHHHHHHHHhcCCeeEEEEEEEEEecceee-cccCCCCCCCCCCC-
Q 002847 80 DGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAMESNHAFRISFSMLEIYLGSLK-DLLVTQPTKATDPL- 157 (874)
Q Consensus 80 dGyN~TIfAYGQTGSGKTyTM~Gs~e~~GIIPRaledLF~~i~e~~~~f~VsVS~lEIYNEkV~-DLL~~~~~~~~~~~- 157 (874)
..++..|+-+|.+||||+. +.+.|++........ -|.|.+-.+..+.+- .|+...........
T Consensus 19 a~~~~pVlI~GE~GtGK~~--------------lA~~IH~~s~r~~~p-fi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~ 83 (168)
T PF00158_consen 19 ASSDLPVLITGETGTGKEL--------------LARAIHNNSPRKNGP-FISVNCAALPEELLESELFGHEKGAFTGARS 83 (168)
T ss_dssp TTSTS-EEEECSTTSSHHH--------------HHHHHHHCSTTTTS--EEEEETTTS-HHHHHHHHHEBCSSSSTTTSS
T ss_pred hCCCCCEEEEcCCCCcHHH--------------HHHHHHHhhhcccCC-eEEEehhhhhcchhhhhhhcccccccccccc
Confidence 4778999999999999964 333444322222222 222222222222221 23322211000000
Q ss_pred CCcceeeecCCCcEEecCcEEEEeCCHHHHHHHHHHhcccc
Q 002847 158 PPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFR 198 (874)
Q Consensus 158 ~~~L~I~ed~~ggv~V~gLtev~V~S~eEal~lL~~G~~nR 198 (874)
...-.+....+|.+++.++.......-..++++|..+.-.|
T Consensus 84 ~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~ 124 (168)
T PF00158_consen 84 DKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTR 124 (168)
T ss_dssp EBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEEC
T ss_pred ccCCceeeccceEEeecchhhhHHHHHHHHHHHHhhchhcc
Confidence 01112233445667888888888888888888888775444
No 306
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=25.07 E-value=42 Score=41.30 Aligned_cols=43 Identities=19% Similarity=0.417 Sum_probs=25.8
Q ss_pred eEeceeeCCCCChHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCccee
Q 002847 52 YSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFT 99 (874)
Q Consensus 52 F~FD~VF~~~asQeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyT 99 (874)
+.|+.+++....-..+.+. +.. +...+..|+-+|.+|||||+.
T Consensus 373 ~~~~~liG~S~~~~~~~~~----~~~-~a~~~~pVLI~GE~GTGK~~l 415 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQ----VEM-VAQSDSTVLILGETGTGKELI 415 (686)
T ss_pred ccccceeecCHHHHHHHHH----HHH-HhCCCCCEEEECCCCcCHHHH
Confidence 4455555543333333322 232 245677899999999999863
No 307
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=24.95 E-value=59 Score=36.32 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=19.4
Q ss_pred hcCCCeeEEEeccCCCCcceecc
Q 002847 79 LDGYNACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 79 LdGyN~TIfAYGQTGSGKTyTM~ 101 (874)
-..-+.-++-||+.|||||.+|.
T Consensus 19 ~~~~~~r~vL~G~~GsGKS~~L~ 41 (309)
T PF10236_consen 19 KSSKNNRYVLTGERGSGKSVLLA 41 (309)
T ss_pred ccCCceEEEEECCCCCCHHHHHH
Confidence 45667889999999999999874
No 308
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=24.89 E-value=28 Score=31.86 Aligned_cols=16 Identities=31% Similarity=0.391 Sum_probs=13.4
Q ss_pred eEEEeccCCCCcceec
Q 002847 85 CIFAYGQTGTGKSFTM 100 (874)
Q Consensus 85 TIfAYGQTGSGKTyTM 100 (874)
-|..+|.+|||||..+
T Consensus 3 ki~~~G~~~~GKstl~ 18 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLL 18 (161)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678899999999854
No 309
>PRK14531 adenylate kinase; Provisional
Probab=24.83 E-value=33 Score=34.84 Aligned_cols=15 Identities=27% Similarity=0.490 Sum_probs=13.0
Q ss_pred eEEEeccCCCCccee
Q 002847 85 CIFAYGQTGTGKSFT 99 (874)
Q Consensus 85 TIfAYGQTGSGKTyT 99 (874)
-|+.+|.+|||||+.
T Consensus 4 ~i~i~G~pGsGKsT~ 18 (183)
T PRK14531 4 RLLFLGPPGAGKGTQ 18 (183)
T ss_pred EEEEECCCCCCHHHH
Confidence 378899999999875
No 310
>PRK06217 hypothetical protein; Validated
Probab=24.82 E-value=32 Score=34.84 Aligned_cols=14 Identities=29% Similarity=0.522 Sum_probs=12.3
Q ss_pred EEEeccCCCCccee
Q 002847 86 IFAYGQTGTGKSFT 99 (874)
Q Consensus 86 IfAYGQTGSGKTyT 99 (874)
|+-.|.+|||||+.
T Consensus 4 I~i~G~~GsGKSTl 17 (183)
T PRK06217 4 IHITGASGSGTTTL 17 (183)
T ss_pred EEEECCCCCCHHHH
Confidence 78899999999864
No 311
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=24.72 E-value=52 Score=41.25 Aligned_cols=42 Identities=26% Similarity=0.504 Sum_probs=31.6
Q ss_pred ceeeCCCCChHHHHHh---h----HHHHHHhhcCCCeeEEEeccCCCCccee
Q 002847 55 DKVFHPGSSQDEVFSE---V----EPVIKSVLDGYNACIFAYGQTGTGKSFT 99 (874)
Q Consensus 55 D~VF~~~asQeeVF~~---V----~PlV~svLdGyN~TIfAYGQTGSGKTyT 99 (874)
++-+++++-|..+|.. + ..+++.+| |.|..|.+ +||+|||+.
T Consensus 44 ~~~~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~l--PTG~GKTfI 92 (746)
T KOG0354|consen 44 SHSLDESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIAL--PTGSGKTFI 92 (746)
T ss_pred cCCCChhhhccccccCcccccHHHHHHhHHhh-cCCeEEEe--ecCCCccch
Confidence 5556777777777753 2 36889999 99976555 999999984
No 312
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.71 E-value=46 Score=40.97 Aligned_cols=41 Identities=20% Similarity=0.326 Sum_probs=26.4
Q ss_pred EeceeeCCCCChHHHHHhhHHHHHHhhcCC-CeeEEEeccCCCCcceec
Q 002847 53 SFDKVFHPGSSQDEVFSEVEPVIKSVLDGY-NACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 53 ~FD~VF~~~asQeeVF~~V~PlV~svLdGy-N~TIfAYGQTGSGKTyTM 100 (874)
+||.|.+ |+.+...+...+ -.|. ...++-||+.|+|||++.
T Consensus 14 ~f~dviG----Qe~vv~~L~~~l---~~~rl~ha~Lf~Gp~GvGKTtlA 55 (618)
T PRK14951 14 SFSEMVG----QEHVVQALTNAL---TQQRLHHAYLFTGTRGVGKTTVS 55 (618)
T ss_pred CHHHhcC----cHHHHHHHHHHH---HcCCCCeEEEEECCCCCCHHHHH
Confidence 4666664 566554433333 2333 356789999999999876
No 313
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=24.71 E-value=83 Score=35.49 Aligned_cols=26 Identities=38% Similarity=0.629 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002847 355 QQKMKKIEEERLRVRGEIENLSEKLE 380 (874)
Q Consensus 355 qqkik~LeeE~~~lr~EIe~Lk~~Le 380 (874)
.+++++|+.|...+.+|+..++.+.+
T Consensus 63 ~~eL~~LE~e~~~l~~el~~le~e~~ 88 (314)
T PF04111_consen 63 LQELEELEKEREELDQELEELEEELE 88 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444333
No 314
>PTZ00014 myosin-A; Provisional
Probab=24.68 E-value=62 Score=41.17 Aligned_cols=34 Identities=21% Similarity=0.374 Sum_probs=24.4
Q ss_pred HHHhhHHHHHHhh-cCCCeeEEEeccCCCCcceec
Q 002847 67 VFSEVEPVIKSVL-DGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 67 VF~~V~PlV~svL-dGyN~TIfAYGQTGSGKTyTM 100 (874)
||.-.......++ .+.|-||+.-|.+|||||.+.
T Consensus 166 ifavA~~Ay~~m~~~~~~QsIiiSGESGAGKTe~t 200 (821)
T PTZ00014 166 VFTTARRALENLHGVKKSQTIIVSGESGAGKTEAT 200 (821)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 4443333333443 689999999999999999875
No 315
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=24.67 E-value=2e+02 Score=23.76 Aligned_cols=33 Identities=18% Similarity=0.290 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 002847 351 MKNLQQKMKKIEEERLRVRGEIENLSEKLEALT 383 (874)
Q Consensus 351 ~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~ 383 (874)
...|+.....|..+...|..|.+.|+.++..++
T Consensus 7 y~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~ 39 (45)
T PF02183_consen 7 YDALKASYDSLKAEYDSLKKENEKLRAEVQELK 39 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555543
No 316
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=24.64 E-value=39 Score=38.04 Aligned_cols=27 Identities=44% Similarity=0.650 Sum_probs=22.8
Q ss_pred HH-HHhhcCCCeeEEEeccCCCCcceec
Q 002847 74 VI-KSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 74 lV-~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
+| .++-+|+..-|++.|.||.|||..|
T Consensus 32 LV~ksv~~GF~FNilCvGETg~GKsTLm 59 (406)
T KOG3859|consen 32 LVNKSVSQGFCFNILCVGETGLGKSTLM 59 (406)
T ss_pred HHHHHHhcCceEEEEEeccCCccHHHHH
Confidence 44 4566999999999999999999755
No 317
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=24.63 E-value=30 Score=38.61 Aligned_cols=13 Identities=38% Similarity=0.731 Sum_probs=11.6
Q ss_pred EeccCCCCcceec
Q 002847 88 AYGQTGTGKSFTM 100 (874)
Q Consensus 88 AYGQTGSGKTyTM 100 (874)
-.|++|||||+||
T Consensus 32 liGpSGsGKTTtL 44 (309)
T COG1125 32 LIGPSGSGKTTTL 44 (309)
T ss_pred EECCCCCcHHHHH
Confidence 4599999999997
No 318
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=24.44 E-value=1.6e+02 Score=37.01 Aligned_cols=17 Identities=0% Similarity=0.051 Sum_probs=7.9
Q ss_pred cCcEEEEeCCHHHHHHH
Q 002847 174 DNLVTIQVNDFNQALRL 190 (874)
Q Consensus 174 ~gLtev~V~S~eEal~l 190 (874)
.|+..+.+.=...+..+
T Consensus 387 ~GvH~V~L~wl~~L~~f 403 (717)
T PF10168_consen 387 AGVHSVTLPWLSALQEF 403 (717)
T ss_pred CccEEEEeccHHHHHHH
Confidence 45555555433333333
No 319
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=24.40 E-value=39 Score=39.06 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=0.0
Q ss_pred cCCCeeEEEeccCCCCcceec
Q 002847 80 DGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 80 dGyN~TIfAYGQTGSGKTyTM 100 (874)
.|+.-+|++.|+.|+|||.-+
T Consensus 20 ~Gi~f~im~~G~sG~GKttfi 40 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFI 40 (373)
T ss_pred cCCceEEEEecCCCCchhHHH
No 320
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=24.33 E-value=54 Score=34.13 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=20.2
Q ss_pred HHHHhh-cCC--CeeEEEeccCCCCcceec
Q 002847 74 VIKSVL-DGY--NACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 74 lV~svL-dGy--N~TIfAYGQTGSGKTyTM 100 (874)
-++.++ .|+ ..+++.+|++|+|||+..
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~ 37 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFC 37 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHH
Confidence 356666 354 567888999999999764
No 321
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=24.26 E-value=61 Score=37.89 Aligned_cols=17 Identities=35% Similarity=0.651 Sum_probs=14.7
Q ss_pred CeeEEEeccCCCCccee
Q 002847 83 NACIFAYGQTGTGKSFT 99 (874)
Q Consensus 83 N~TIfAYGQTGSGKTyT 99 (874)
...|+-+|+||+|||+.
T Consensus 108 ~~~iLl~Gp~GtGKT~l 124 (412)
T PRK05342 108 KSNILLIGPTGSGKTLL 124 (412)
T ss_pred CceEEEEcCCCCCHHHH
Confidence 36699999999999976
No 322
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=24.21 E-value=1.6e+02 Score=28.69 Aligned_cols=33 Identities=30% Similarity=0.480 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002847 350 SMKNLQQKMKKIEEERLRVRGEIENLSEKLEAL 382 (874)
Q Consensus 350 ~~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l 382 (874)
.+..|++.+.++.+|+..|+-|.+.|++.|+++
T Consensus 23 el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 23 ELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 323
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=24.19 E-value=32 Score=29.40 Aligned_cols=15 Identities=33% Similarity=0.512 Sum_probs=12.1
Q ss_pred EEEeccCCCCcceec
Q 002847 86 IFAYGQTGTGKSFTM 100 (874)
Q Consensus 86 IfAYGQTGSGKTyTM 100 (874)
++.+|..|+|||.+.
T Consensus 2 ~~~~g~~G~Gktt~~ 16 (99)
T cd01983 2 IVVTGKGGVGKTTLA 16 (99)
T ss_pred EEEECCCCCCHHHHH
Confidence 566788899999874
No 324
>PHA02244 ATPase-like protein
Probab=24.05 E-value=66 Score=37.48 Aligned_cols=19 Identities=26% Similarity=0.508 Sum_probs=14.5
Q ss_pred cCCCeeEEEeccCCCCcceec
Q 002847 80 DGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 80 dGyN~TIfAYGQTGSGKTyTM 100 (874)
.|.+ |+-+|++|+|||+..
T Consensus 118 ~~~P--VLL~GppGtGKTtLA 136 (383)
T PHA02244 118 ANIP--VFLKGGAGSGKNHIA 136 (383)
T ss_pred cCCC--EEEECCCCCCHHHHH
Confidence 4555 556899999999864
No 325
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=24.00 E-value=1.5e+02 Score=35.33 Aligned_cols=45 Identities=22% Similarity=0.276 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q 002847 349 VSMKNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQEQL 393 (874)
Q Consensus 349 ~~~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~lqeql 393 (874)
..+.+++.+++++.+|.+.++++.+.|.+.+..+......++++.
T Consensus 382 ~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~ 426 (493)
T KOG0804|consen 382 RKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEERE 426 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 345566666666666666666555555554444444443333333
No 326
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=23.86 E-value=59 Score=35.80 Aligned_cols=28 Identities=25% Similarity=0.401 Sum_probs=21.6
Q ss_pred HHHHHhhcCC---CeeEEEeccCCCCcceec
Q 002847 73 PVIKSVLDGY---NACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 73 PlV~svLdGy---N~TIfAYGQTGSGKTyTM 100 (874)
+-++.+|.|- ...+..||.+|||||...
T Consensus 82 ~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~ 112 (310)
T TIGR02236 82 KELDELLGGGIETQAITEVFGEFGSGKTQIC 112 (310)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4577888754 566789999999999764
No 327
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=23.81 E-value=30 Score=44.11 Aligned_cols=20 Identities=45% Similarity=0.630 Sum_probs=17.1
Q ss_pred CCeeEEEeccCCCCcceecc
Q 002847 82 YNACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 82 yN~TIfAYGQTGSGKTyTM~ 101 (874)
.|+-.+..|+||||||++|-
T Consensus 474 ~n~n~~I~G~TGSGKS~l~~ 493 (893)
T TIGR03744 474 KNAHLLILGPTGAGKSATLT 493 (893)
T ss_pred CcccEEEECCCCCCHHHHHH
Confidence 47778889999999999874
No 328
>CHL00195 ycf46 Ycf46; Provisional
Probab=23.81 E-value=31 Score=41.21 Aligned_cols=17 Identities=41% Similarity=0.579 Sum_probs=14.6
Q ss_pred eeEEEeccCCCCcceec
Q 002847 84 ACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 84 ~TIfAYGQTGSGKTyTM 100 (874)
-.|+-||++|+|||++.
T Consensus 260 kGILL~GPpGTGKTllA 276 (489)
T CHL00195 260 RGLLLVGIQGTGKSLTA 276 (489)
T ss_pred ceEEEECCCCCcHHHHH
Confidence 56999999999999763
No 329
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=23.74 E-value=31 Score=35.30 Aligned_cols=14 Identities=36% Similarity=0.468 Sum_probs=12.0
Q ss_pred EEEeccCCCCccee
Q 002847 86 IFAYGQTGTGKSFT 99 (874)
Q Consensus 86 IfAYGQTGSGKTyT 99 (874)
|.-.|++|||||+.
T Consensus 2 IgI~G~sgSGKTTl 15 (194)
T PF00485_consen 2 IGIAGPSGSGKTTL 15 (194)
T ss_dssp EEEEESTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 56789999999986
No 330
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=23.73 E-value=52 Score=39.87 Aligned_cols=42 Identities=24% Similarity=0.469 Sum_probs=29.0
Q ss_pred ceeEeceeeCCCCChHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCc
Q 002847 50 KNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGK 96 (874)
Q Consensus 50 k~F~FD~VF~~~asQeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGK 96 (874)
..|+||.+.+....=. .+..+++ -..+.+++|+-+|.|||||
T Consensus 240 a~y~f~~Iig~S~~m~----~~~~~ak-r~A~tdstVLi~GESGTGK 281 (560)
T COG3829 240 AKYTFDDIIGESPAML----RVLELAK-RIAKTDSTVLILGESGTGK 281 (560)
T ss_pred cccchhhhccCCHHHH----HHHHHHH-hhcCCCCcEEEecCCCccH
Confidence 4588999887643322 2222222 2478999999999999999
No 331
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=23.62 E-value=54 Score=40.51 Aligned_cols=32 Identities=19% Similarity=0.279 Sum_probs=22.4
Q ss_pred hHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 64 QDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 64 QeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
|.+++..|...+. + +..+++-.+||||||+..
T Consensus 2 Q~~~~~~i~~al~---~--~~~lliEA~TGtGKTlAY 33 (636)
T TIGR03117 2 QALFYLNCLTSLR---Q--KRIGMLEASTGVGKTLAM 33 (636)
T ss_pred HHHHHHHHHHHHh---c--CCeEEEEcCCCCcHHHHH
Confidence 7777766544432 2 355788899999999664
No 332
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=23.56 E-value=61 Score=34.38 Aligned_cols=25 Identities=32% Similarity=0.575 Sum_probs=19.1
Q ss_pred HHHHhhc-CC--CeeEEEeccCCCCcce
Q 002847 74 VIKSVLD-GY--NACIFAYGQTGTGKSF 98 (874)
Q Consensus 74 lV~svLd-Gy--N~TIfAYGQTGSGKTy 98 (874)
-++.++. |+ ..+++.+|++|||||.
T Consensus 9 ~LD~~l~GG~~~gs~~lI~G~pGsGKT~ 36 (237)
T TIGR03877 9 GMDEILHGGIPERNVVLLSGGPGTGKSI 36 (237)
T ss_pred hHHHHhcCCCcCCeEEEEEcCCCCCHHH
Confidence 3566664 44 5778999999999985
No 333
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=23.56 E-value=1.2e+02 Score=30.49 Aligned_cols=41 Identities=34% Similarity=0.493 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHH
Q 002847 351 MKNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQE 391 (874)
Q Consensus 351 ~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~lqe 391 (874)
+..++..+++|+.|+..-..||..|+++|+++...+..+++
T Consensus 89 i~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lek 129 (131)
T PF04859_consen 89 IKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEK 129 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 55666667778888888888888888888887766655543
No 334
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=23.52 E-value=36 Score=33.77 Aligned_cols=16 Identities=38% Similarity=0.602 Sum_probs=13.4
Q ss_pred eEEEeccCCCCcceec
Q 002847 85 CIFAYGQTGTGKSFTM 100 (874)
Q Consensus 85 TIfAYGQTGSGKTyTM 100 (874)
.|+..|..|||||+..
T Consensus 5 ii~i~G~~GsGKsTl~ 20 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQC 20 (188)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677999999999864
No 335
>PRK13767 ATP-dependent helicase; Provisional
Probab=23.50 E-value=45 Score=42.45 Aligned_cols=25 Identities=32% Similarity=0.511 Sum_probs=18.7
Q ss_pred HHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 74 VIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 74 lV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
.+..+++|.|+.| ..+||||||...
T Consensus 40 Ai~~il~g~nvli--~APTGSGKTlaa 64 (876)
T PRK13767 40 AIPLIHEGKNVLI--SSPTGSGKTLAA 64 (876)
T ss_pred HHHHHHcCCCEEE--ECCCCCcHHHHH
Confidence 3455678998654 559999999874
No 336
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=23.46 E-value=2e+02 Score=25.48 Aligned_cols=32 Identities=16% Similarity=0.260 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 002847 353 NLQQKMKKIEEERLRVRGEIENLSEKLEALTR 384 (874)
Q Consensus 353 ~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~ 384 (874)
.|+.++.-+++-+..|...+...+.+|+.|++
T Consensus 8 ~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~ 39 (69)
T PF04102_consen 8 ELEIKLAFQEDTIEELNDVVTEQQRQIDRLQR 39 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444333333333333333333333
No 337
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=23.31 E-value=32 Score=41.37 Aligned_cols=14 Identities=36% Similarity=0.880 Sum_probs=0.0
Q ss_pred EEEeccCCCCccee
Q 002847 86 IFAYGQTGTGKSFT 99 (874)
Q Consensus 86 IfAYGQTGSGKTyT 99 (874)
|+-||++|+|||+.
T Consensus 219 ILLyGPPGTGKT~L 232 (512)
T TIGR03689 219 VLLYGPPGCGKTLI 232 (512)
T ss_pred eEEECCCCCcHHHH
No 338
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=23.23 E-value=2.2e+02 Score=28.68 Aligned_cols=28 Identities=25% Similarity=0.436 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002847 350 SMKNLQQKMKKIEEERLRVRGEIENLSE 377 (874)
Q Consensus 350 ~~~~Lqqkik~LeeE~~~lr~EIe~Lk~ 377 (874)
.+..|+.++..++.++..+...+..++.
T Consensus 36 EI~sL~~K~~~lE~eld~~~~~l~~~k~ 63 (143)
T PF12718_consen 36 EITSLQKKNQQLEEELDKLEEQLKEAKE 63 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555554444444444443
No 339
>PF14645 Chibby: Chibby family
Probab=23.20 E-value=1.5e+02 Score=28.96 Aligned_cols=42 Identities=26% Similarity=0.345 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH
Q 002847 351 MKNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQEQ 392 (874)
Q Consensus 351 ~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~lqeq 392 (874)
...++++++.|++|+..|+-+++-|-.-|.+.+-+...++++
T Consensus 73 ~~~l~~~n~~L~EENN~Lklk~elLlDMLtettae~~l~ek~ 114 (116)
T PF14645_consen 73 NQRLRKENQQLEEENNLLKLKIELLLDMLTETTAEAHLLEKE 114 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456778888899999988888888877777655544444443
No 340
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=23.19 E-value=1.4e+02 Score=27.64 Aligned_cols=56 Identities=23% Similarity=0.320 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhh----------HHHHHhhcc-CCcccchhh
Q 002847 351 MKNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHS----------FQEQLEVSH-SSEEPLSNL 406 (874)
Q Consensus 351 ~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~----------lqeql~~~~-~~ee~l~~l 406 (874)
..+|+.++...-+.+.-|+-||++|+++-..+...... -.++++..+ .-.+++..+
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
No 341
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=23.14 E-value=62 Score=39.62 Aligned_cols=27 Identities=26% Similarity=0.489 Sum_probs=18.4
Q ss_pred HHHHhhcCC----CeeEEEeccCCCCcceec
Q 002847 74 VIKSVLDGY----NACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 74 lV~svLdGy----N~TIfAYGQTGSGKTyTM 100 (874)
.+..++.+. ..-++..|+||||||...
T Consensus 243 ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va 273 (630)
T TIGR00643 243 VVKEILQDLKSDVPMNRLLQGDVGSGKTLVA 273 (630)
T ss_pred HHHHHHHHhccCCCccEEEECCCCCcHHHHH
Confidence 344444443 234789999999999864
No 342
>PRK14532 adenylate kinase; Provisional
Probab=23.07 E-value=37 Score=34.19 Aligned_cols=15 Identities=20% Similarity=0.479 Sum_probs=12.9
Q ss_pred eEEEeccCCCCccee
Q 002847 85 CIFAYGQTGTGKSFT 99 (874)
Q Consensus 85 TIfAYGQTGSGKTyT 99 (874)
.|+..|.+|||||+.
T Consensus 2 ~i~~~G~pGsGKsT~ 16 (188)
T PRK14532 2 NLILFGPPAAGKGTQ 16 (188)
T ss_pred EEEEECCCCCCHHHH
Confidence 378899999999875
No 343
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=23.03 E-value=38 Score=41.28 Aligned_cols=20 Identities=15% Similarity=0.277 Sum_probs=16.4
Q ss_pred CCeeEEEeccCCCCcceecc
Q 002847 82 YNACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 82 yN~TIfAYGQTGSGKTyTM~ 101 (874)
..+.++..|..|||||.||.
T Consensus 13 ~~~~~~V~Ag~GSGKT~~L~ 32 (664)
T TIGR01074 13 VTGPCLVLAGAGSGKTRVIT 32 (664)
T ss_pred CCCCEEEEecCCCCHHHHHH
Confidence 34567889999999999964
No 344
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=22.94 E-value=30 Score=39.71 Aligned_cols=17 Identities=35% Similarity=0.616 Sum_probs=12.4
Q ss_pred eeEEEeccCCCCcceec
Q 002847 84 ACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 84 ~TIfAYGQTGSGKTyTM 100 (874)
.-++..|.||||||.+|
T Consensus 16 ~~~li~G~~GsGKT~~i 32 (386)
T PF10412_consen 16 RHILIIGATGSGKTQAI 32 (386)
T ss_dssp G-EEEEE-TTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 34788999999999754
No 345
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=22.94 E-value=37 Score=38.68 Aligned_cols=72 Identities=22% Similarity=0.391 Sum_probs=44.8
Q ss_pred EeceeeCCCCChHHHHHh-hHHH-HHHhhcCC---CeeEEEeccCCCCcceeccC--CC---------------CCCCcH
Q 002847 53 SFDKVFHPGSSQDEVFSE-VEPV-IKSVLDGY---NACIFAYGQTGTGKSFTMEG--TP---------------DSPGIV 110 (874)
Q Consensus 53 ~FD~VF~~~asQeeVF~~-V~Pl-V~svLdGy---N~TIfAYGQTGSGKTyTM~G--s~---------------e~~GII 110 (874)
..+-|-+-+..-+.+-++ +-|+ ..++|.|. -..|+-||+.|+||+|.--. +. ..-|=-
T Consensus 131 kWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGES 210 (439)
T KOG0739|consen 131 KWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGES 210 (439)
T ss_pred chhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccH
Confidence 344455544444444444 3453 35666665 36799999999999996421 10 113777
Q ss_pred HHHHHHHHHHHHhc
Q 002847 111 PRAIEAIFKQAMES 124 (874)
Q Consensus 111 PRaledLF~~i~e~ 124 (874)
.+.+..||+.+.+.
T Consensus 211 EkLVknLFemARe~ 224 (439)
T KOG0739|consen 211 EKLVKNLFEMAREN 224 (439)
T ss_pred HHHHHHHHHHHHhc
Confidence 88999999877554
No 346
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.90 E-value=59 Score=38.67 Aligned_cols=41 Identities=27% Similarity=0.366 Sum_probs=24.8
Q ss_pred EeceeeCCCCChHHHHHhhHHHHHHhhcCCC-eeEEEeccCCCCcceec
Q 002847 53 SFDKVFHPGSSQDEVFSEVEPVIKSVLDGYN-ACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 53 ~FD~VF~~~asQeeVF~~V~PlV~svLdGyN-~TIfAYGQTGSGKTyTM 100 (874)
+||.|.+ |+.+ ++.+-..+-.|.- ..++-||+.|+|||++.
T Consensus 12 ~~~divG----q~~i---~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA 53 (472)
T PRK14962 12 TFSEVVG----QDHV---KKLIINALKKNSISHAYIFAGPRGTGKTTVA 53 (472)
T ss_pred CHHHccC----cHHH---HHHHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 4565555 3444 2233333334443 45899999999999875
No 347
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.86 E-value=2.3e+02 Score=31.59 Aligned_cols=41 Identities=22% Similarity=0.402 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHH
Q 002847 351 MKNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQE 391 (874)
Q Consensus 351 ~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~lqe 391 (874)
+.++++....++.++..|..+|+.+..++..+..++...++
T Consensus 40 l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~ 80 (265)
T COG3883 40 LSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKA 80 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444433333333333
No 348
>PRK00736 hypothetical protein; Provisional
Probab=22.86 E-value=2.7e+02 Score=24.72 Aligned_cols=44 Identities=9% Similarity=0.234 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHh
Q 002847 351 MKNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQEQLE 394 (874)
Q Consensus 351 ~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~lqeql~ 394 (874)
+..|+.++.-++.-+..|.+.+...+..|..|++....+.++++
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~ 50 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFL 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555554444444443
No 349
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=22.84 E-value=3.1e+02 Score=28.54 Aligned_cols=21 Identities=24% Similarity=0.370 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002847 362 EEERLRVRGEIENLSEKLEAL 382 (874)
Q Consensus 362 eeE~~~lr~EIe~Lk~~Le~l 382 (874)
++|+..|+.+++.|+.+++.|
T Consensus 110 ~~e~~~l~~~~e~Le~e~~~L 130 (161)
T TIGR02894 110 KNQNESLQKRNEELEKELEKL 130 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 350
>PRK10867 signal recognition particle protein; Provisional
Probab=22.79 E-value=85 Score=37.06 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=15.8
Q ss_pred CeeEEEeccCCCCcceecc
Q 002847 83 NACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 83 N~TIfAYGQTGSGKTyTM~ 101 (874)
-..|+..|.+|||||.|..
T Consensus 100 p~vI~~vG~~GsGKTTtaa 118 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAG 118 (433)
T ss_pred CEEEEEECCCCCcHHHHHH
Confidence 3568888999999999853
No 351
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=22.77 E-value=42 Score=37.64 Aligned_cols=43 Identities=28% Similarity=0.505 Sum_probs=28.6
Q ss_pred cCCC--eeEEEeccCCCCcceecc--------------CCC---CCCCcHHHHHHHHHHHHH
Q 002847 80 DGYN--ACIFAYGQTGTGKSFTME--------------GTP---DSPGIVPRAIEAIFKQAM 122 (874)
Q Consensus 80 dGyN--~TIfAYGQTGSGKTyTM~--------------Gs~---e~~GIIPRaledLF~~i~ 122 (874)
-|.. --|+.||+.|+|||..-- |+. .--|==.|.+++||+.+.
T Consensus 206 lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~mar 267 (435)
T KOG0729|consen 206 LGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMAR 267 (435)
T ss_pred cCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhc
Confidence 4654 358999999999986542 211 012555788899998654
No 352
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=22.68 E-value=56 Score=34.95 Aligned_cols=25 Identities=28% Similarity=0.626 Sum_probs=18.5
Q ss_pred HHHhhcC-C--CeeEEEeccCCCCccee
Q 002847 75 IKSVLDG-Y--NACIFAYGQTGTGKSFT 99 (874)
Q Consensus 75 V~svLdG-y--N~TIfAYGQTGSGKTyT 99 (874)
++.++.| + ...++.||.+|||||.-
T Consensus 12 lD~~l~GG~p~g~~~lI~G~pGsGKT~f 39 (260)
T COG0467 12 LDEILGGGLPRGSVVLITGPPGTGKTIF 39 (260)
T ss_pred hHHHhcCCCcCCcEEEEEcCCCCcHHHH
Confidence 4555554 3 67789999999999853
No 353
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=22.64 E-value=1.2e+02 Score=27.97 Aligned_cols=27 Identities=33% Similarity=0.587 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 002847 358 MKKIEEERLRVRGEIENLSEKLEALTR 384 (874)
Q Consensus 358 ik~LeeE~~~lr~EIe~Lk~~Le~l~~ 384 (874)
+.+|.+|+.+|+.+|++|+.+|.++.+
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~ 28 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKR 28 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677777888888888777776544
No 354
>PTZ00110 helicase; Provisional
Probab=22.58 E-value=48 Score=39.82 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=20.3
Q ss_pred HHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 73 PVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 73 PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
..+..++.|.|. ++.++||||||.+.
T Consensus 159 ~aip~~l~G~dv--I~~ApTGSGKTlay 184 (545)
T PTZ00110 159 QGWPIALSGRDM--IGIAETGSGKTLAF 184 (545)
T ss_pred HHHHHHhcCCCE--EEEeCCCChHHHHH
Confidence 346678899876 56679999999864
No 355
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=22.56 E-value=50 Score=42.79 Aligned_cols=27 Identities=33% Similarity=0.468 Sum_probs=21.8
Q ss_pred HHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 73 PVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 73 PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
..|..++.+.+.+ +..|..||||||+|
T Consensus 353 ~Av~~il~s~~v~-vv~G~AGTGKTT~l 379 (988)
T PRK13889 353 DALAHVTDGRDLG-VVVGYAGTGKSAML 379 (988)
T ss_pred HHHHHHhcCCCeE-EEEeCCCCCHHHHH
Confidence 4677888877754 58899999999986
No 356
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=22.39 E-value=34 Score=35.66 Aligned_cols=15 Identities=47% Similarity=0.649 Sum_probs=13.4
Q ss_pred eEEEeccCCCCccee
Q 002847 85 CIFAYGQTGTGKSFT 99 (874)
Q Consensus 85 TIfAYGQTGSGKTyT 99 (874)
.|+..|.||||||.+
T Consensus 2 ~IlllG~tGsGKSs~ 16 (212)
T PF04548_consen 2 RILLLGKTGSGKSSL 16 (212)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 588999999999975
No 357
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=22.39 E-value=51 Score=41.31 Aligned_cols=28 Identities=25% Similarity=0.431 Sum_probs=20.9
Q ss_pred HHHHHhhcCCCeeEEEeccCCCCcceecc
Q 002847 73 PVIKSVLDGYNACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 73 PlV~svLdGyN~TIfAYGQTGSGKTyTM~ 101 (874)
..|..++.+ +..++..|..|+||||+|-
T Consensus 359 ~Av~~i~~s-~~~~il~G~aGTGKTtll~ 386 (744)
T TIGR02768 359 EAVRHVTGS-GDIAVVVGRAGTGKSTMLK 386 (744)
T ss_pred HHHHHHhcC-CCEEEEEecCCCCHHHHHH
Confidence 356666665 3456788999999999874
No 358
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=22.27 E-value=34 Score=34.83 Aligned_cols=15 Identities=33% Similarity=0.432 Sum_probs=12.4
Q ss_pred EEEeccCCCCcceec
Q 002847 86 IFAYGQTGTGKSFTM 100 (874)
Q Consensus 86 IfAYGQTGSGKTyTM 100 (874)
|.--|++|||||+++
T Consensus 2 igi~G~~GsGKSTl~ 16 (198)
T cd02023 2 IGIAGGSGSGKTTVA 16 (198)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999875
No 359
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=22.16 E-value=39 Score=32.98 Aligned_cols=16 Identities=31% Similarity=0.439 Sum_probs=13.1
Q ss_pred eEEEeccCCCCcceec
Q 002847 85 CIFAYGQTGTGKSFTM 100 (874)
Q Consensus 85 TIfAYGQTGSGKTyTM 100 (874)
.|.-+|+.|||||+..
T Consensus 2 iI~i~G~~GSGKstia 17 (171)
T TIGR02173 2 IITISGPPGSGKTTVA 17 (171)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999998653
No 360
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=22.07 E-value=40 Score=32.55 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=16.2
Q ss_pred cCCCeeEEEeccCCCCccee
Q 002847 80 DGYNACIFAYGQTGTGKSFT 99 (874)
Q Consensus 80 dGyN~TIfAYGQTGSGKTyT 99 (874)
...+..|+-+|..||||++.
T Consensus 18 a~~~~pvli~GE~GtGK~~~ 37 (138)
T PF14532_consen 18 AKSSSPVLITGEPGTGKSLL 37 (138)
T ss_dssp HCSSS-EEEECCTTSSHHHH
T ss_pred hCCCCcEEEEcCCCCCHHHH
Confidence 46777889999999999875
No 361
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.01 E-value=2.2e+02 Score=31.78 Aligned_cols=26 Identities=23% Similarity=0.475 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002847 357 KMKKIEEERLRVRGEIENLSEKLEAL 382 (874)
Q Consensus 357 kik~LeeE~~~lr~EIe~Lk~~Le~l 382 (874)
++.++++++..++.+|..|+.+|+.+
T Consensus 67 k~~~~~~~i~~~~~eik~l~~eI~~~ 92 (265)
T COG3883 67 KIDELQKEIDQSKAEIKKLQKEIAEL 92 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 362
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=21.95 E-value=41 Score=37.61 Aligned_cols=14 Identities=43% Similarity=0.930 Sum_probs=12.4
Q ss_pred eEEEeccCCCCcce
Q 002847 85 CIFAYGQTGTGKSF 98 (874)
Q Consensus 85 TIfAYGQTGSGKTy 98 (874)
.++.||+.|+|||.
T Consensus 207 GvLmYGPPGTGKTl 220 (424)
T KOG0652|consen 207 GVLMYGPPGTGKTL 220 (424)
T ss_pred ceEeeCCCCCcHHH
Confidence 48999999999984
No 363
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=21.83 E-value=59 Score=35.29 Aligned_cols=39 Identities=26% Similarity=0.383 Sum_probs=23.9
Q ss_pred CCCChHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 60 PGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 60 ~~asQeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
++++|....+....+-+. .-....|+..|.||+|||.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~--~~~~~~IllvG~tGvGKSSli 48 (249)
T cd01853 10 PDAAQTKALELEAKGKEE--LDFSLTILVLGKTGVGKSSTI 48 (249)
T ss_pred cHHHHHHHHHHHHHhhhh--ccCCeEEEEECCCCCcHHHHH
Confidence 345555444432333222 344567889999999999864
No 364
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=21.77 E-value=58 Score=36.49 Aligned_cols=30 Identities=23% Similarity=0.276 Sum_probs=20.0
Q ss_pred cCCCcEEecCcEEEEeCCHHHHHHHHHHhc
Q 002847 166 EPKGGIEIDNLVTIQVNDFNQALRLYRLGC 195 (874)
Q Consensus 166 d~~ggv~V~gLtev~V~S~eEal~lL~~G~ 195 (874)
..+|.+++.++......--..++.++..+.
T Consensus 99 a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~ 128 (326)
T PRK11608 99 ADGGTLFLDELATAPMLVQEKLLRVIEYGE 128 (326)
T ss_pred cCCCeEEeCChhhCCHHHHHHHHHHHhcCc
Confidence 344557777777776666667777776654
No 365
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=21.75 E-value=38 Score=39.73 Aligned_cols=19 Identities=32% Similarity=0.396 Sum_probs=16.1
Q ss_pred CeeEEEeccCCCCcceecc
Q 002847 83 NACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 83 N~TIfAYGQTGSGKTyTM~ 101 (874)
...|...|++|+|||.|+-
T Consensus 191 g~vi~lvGpnG~GKTTtla 209 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTA 209 (420)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568889999999999973
No 366
>PRK04406 hypothetical protein; Provisional
Probab=21.65 E-value=2.5e+02 Score=25.49 Aligned_cols=34 Identities=6% Similarity=0.082 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh
Q 002847 353 NLQQKMKKIEEERLRVRGEIENLSEKLEALTRPA 386 (874)
Q Consensus 353 ~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~ 386 (874)
.|+.++.-++.-+..|.+.+...+..|..|++..
T Consensus 15 ~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql 48 (75)
T PRK04406 15 DLECQLAFQEQTIEELNDALSQQQLLITKMQDQM 48 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444434433334333333333444333333
No 367
>PRK04040 adenylate kinase; Provisional
Probab=21.62 E-value=41 Score=34.82 Aligned_cols=16 Identities=25% Similarity=0.524 Sum_probs=13.6
Q ss_pred eEEEeccCCCCcceec
Q 002847 85 CIFAYGQTGTGKSFTM 100 (874)
Q Consensus 85 TIfAYGQTGSGKTyTM 100 (874)
.|+.+|.+|||||+..
T Consensus 4 ~i~v~G~pG~GKtt~~ 19 (188)
T PRK04040 4 VVVVTGVPGVGKTTVL 19 (188)
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4788999999999854
No 368
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=21.61 E-value=52 Score=39.66 Aligned_cols=44 Identities=20% Similarity=0.506 Sum_probs=27.8
Q ss_pred eeEeceeeCCCCChHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCccee
Q 002847 51 NYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFT 99 (874)
Q Consensus 51 ~F~FD~VF~~~asQeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyT 99 (874)
.|.||.+++... ....+...+.. +...+..|+-+|.+||||++.
T Consensus 208 ~~~f~~iiG~S~----~m~~~~~~i~~-~A~~~~pVLI~GE~GTGKe~l 251 (526)
T TIGR02329 208 RYRLDDLLGASA----PMEQVRALVRL-YARSDATVLILGESGTGKELV 251 (526)
T ss_pred ccchhheeeCCH----HHHHHHHHHHH-HhCCCCcEEEECCCCcCHHHH
Confidence 366777666433 22233333333 355678999999999999653
No 369
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=21.61 E-value=1.1e+02 Score=33.98 Aligned_cols=50 Identities=24% Similarity=0.442 Sum_probs=32.9
Q ss_pred HHhhcCCCee-EEEeccCCCCcceeccCCCCCCCcHHHHHHHHHHHHHhcCCeeEEEEEEEEEecceeecc
Q 002847 76 KSVLDGYNAC-IFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAMESNHAFRISFSMLEIYLGSLKDL 145 (874)
Q Consensus 76 ~svLdGyN~T-IfAYGQTGSGKTyTM~Gs~e~~GIIPRaledLF~~i~e~~~~f~VsVS~lEIYNEkV~DL 145 (874)
..+++|+-+- |+-||..|+||+.. +..++.......-. .+||-.+.+.+|
T Consensus 77 ~~F~~G~pANnVLLwGaRGtGKSSL--------------VKA~~~e~~~~glr------LVEV~k~dl~~L 127 (287)
T COG2607 77 EQFAEGLPANNVLLWGARGTGKSSL--------------VKALLNEYADEGLR------LVEVDKEDLATL 127 (287)
T ss_pred HHHHcCCcccceEEecCCCCChHHH--------------HHHHHHHHHhcCCe------EEEEcHHHHhhH
Confidence 3456787654 89999999999753 44455544433322 688887766555
No 370
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=21.58 E-value=39 Score=36.82 Aligned_cols=23 Identities=35% Similarity=0.618 Sum_probs=16.1
Q ss_pred hhcCCCee------EEEeccCCCCcceec
Q 002847 78 VLDGYNAC------IFAYGQTGTGKSFTM 100 (874)
Q Consensus 78 vLdGyN~T------IfAYGQTGSGKTyTM 100 (874)
||+|.|.+ +.-.|++|||||+.+
T Consensus 17 VLkgi~l~v~~Gevv~iiGpSGSGKSTlL 45 (240)
T COG1126 17 VLKGISLSVEKGEVVVIIGPSGSGKSTLL 45 (240)
T ss_pred EecCcceeEcCCCEEEEECCCCCCHHHHH
Confidence 35555544 356799999999764
No 371
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.52 E-value=59 Score=38.96 Aligned_cols=35 Identities=20% Similarity=0.346 Sum_probs=22.2
Q ss_pred ChHHHHHhhHHHHHHhhcCC-CeeEEEeccCCCCcceec
Q 002847 63 SQDEVFSEVEPVIKSVLDGY-NACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 63 sQeeVF~~V~PlV~svLdGy-N~TIfAYGQTGSGKTyTM 100 (874)
.|+.+...+ ...+-.|. ..+++-||+.|+|||.+.
T Consensus 22 GQe~iv~~L---~~~i~~~ri~ha~Lf~GP~GtGKTTlA 57 (484)
T PRK14956 22 HQDLAIGAL---QNALKSGKIGHAYIFFGPRGVGKTTIA 57 (484)
T ss_pred ChHHHHHHH---HHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 345554433 33333444 346899999999999875
No 372
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.49 E-value=65 Score=36.25 Aligned_cols=25 Identities=16% Similarity=0.339 Sum_probs=18.1
Q ss_pred HHhhcCC-CeeEEEeccCCCCcceec
Q 002847 76 KSVLDGY-NACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 76 ~svLdGy-N~TIfAYGQTGSGKTyTM 100 (874)
..+-.|. ...++-||+.|+|||++.
T Consensus 31 ~~i~~~~~~~~~L~~G~~G~GKt~~a 56 (367)
T PRK14970 31 NAIENNHLAQALLFCGPRGVGKTTCA 56 (367)
T ss_pred HHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 3333454 457888999999999765
No 373
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=21.42 E-value=39 Score=39.58 Aligned_cols=18 Identities=44% Similarity=0.529 Sum_probs=15.3
Q ss_pred eeEEEeccCCCCcceecc
Q 002847 84 ACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 84 ~TIfAYGQTGSGKTyTM~ 101 (874)
..|.-.|++|+|||+|+.
T Consensus 207 ~ii~lvGptGvGKTTt~a 224 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLV 224 (407)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457788999999999974
No 374
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=21.38 E-value=69 Score=40.89 Aligned_cols=35 Identities=20% Similarity=0.371 Sum_probs=21.8
Q ss_pred CCeeEEEeccCCCCccee-------ccCCCCCCCcHHHHHHHHH
Q 002847 82 YNACIFAYGQTGTGKSFT-------MEGTPDSPGIVPRAIEAIF 118 (874)
Q Consensus 82 yN~TIfAYGQTGSGKTyT-------M~Gs~e~~GIIPRaledLF 118 (874)
.++..+-+|+||||||.- +||...-.| +....++.
T Consensus 24 ~~gi~lI~G~nGsGKSSIldAI~~ALyG~~~~~~--~~~~~~~i 65 (908)
T COG0419 24 DSGIFLIVGPNGAGKSSILDAITFALYGKTPRLG--AFSLDDLI 65 (908)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHcCCCCCcc--chhhhHHH
Confidence 344556789999999854 477655434 33444444
No 375
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=21.34 E-value=56 Score=39.55 Aligned_cols=42 Identities=24% Similarity=0.421 Sum_probs=26.2
Q ss_pred eEeceeeCCCCChHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCcce
Q 002847 52 YSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSF 98 (874)
Q Consensus 52 F~FD~VF~~~asQeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTy 98 (874)
|.|+.+++... ....+...+.. +...+..|+-+|.+||||++
T Consensus 216 ~~f~~iiG~S~----~m~~~~~~i~~-~A~s~~pVLI~GE~GTGKe~ 257 (538)
T PRK15424 216 YVLGDLLGQSP----QMEQVRQTILL-YARSSAAVLIQGETGTGKEL 257 (538)
T ss_pred cchhheeeCCH----HHHHHHHHHHH-HhCCCCcEEEECCCCCCHHH
Confidence 55666665432 22223333333 35568899999999999974
No 376
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=21.31 E-value=61 Score=40.62 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=19.8
Q ss_pred HHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 73 PVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 73 PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
..+..+++|.|..+. -+||||||...
T Consensus 43 ~ai~~il~G~nvvv~--apTGSGKTla~ 68 (742)
T TIGR03817 43 RAAELAHAGRHVVVA--TGTASGKSLAY 68 (742)
T ss_pred HHHHHHHCCCCEEEE--CCCCCcHHHHH
Confidence 355677899996554 58999999864
No 377
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=21.25 E-value=84 Score=35.84 Aligned_cols=40 Identities=30% Similarity=0.580 Sum_probs=28.0
Q ss_pred eEEEeccCCCCcceecc--------------CCC---CCCCcHHHHHHHHHHHHHhc
Q 002847 85 CIFAYGQTGTGKSFTME--------------GTP---DSPGIVPRAIEAIFKQAMES 124 (874)
Q Consensus 85 TIfAYGQTGSGKTyTM~--------------Gs~---e~~GIIPRaledLF~~i~e~ 124 (874)
-|+-||..|+|||..-- |+. ..-|==|+.+++||+-+.+.
T Consensus 221 GVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~ 277 (440)
T KOG0726|consen 221 GVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEH 277 (440)
T ss_pred eeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhc
Confidence 47899999999986431 211 11255699999999877553
No 378
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=21.20 E-value=52 Score=40.14 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=18.4
Q ss_pred HHHHhhcCCCeeEEEeccCCCCcceecc
Q 002847 74 VIKSVLDGYNACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 74 lV~svLdGyN~TIfAYGQTGSGKTyTM~ 101 (874)
.|..++.. ...+..|..|||||||+.
T Consensus 153 A~~~al~~--~~~vitGgpGTGKTt~v~ 178 (586)
T TIGR01447 153 AVALALKS--NFSLITGGPGTGKTTTVA 178 (586)
T ss_pred HHHHHhhC--CeEEEEcCCCCCHHHHHH
Confidence 45555553 445667999999999974
No 379
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=21.19 E-value=38 Score=41.90 Aligned_cols=18 Identities=28% Similarity=0.547 Sum_probs=16.2
Q ss_pred CeeEEEeccCCCCcceec
Q 002847 83 NACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 83 N~TIfAYGQTGSGKTyTM 100 (874)
|+-++..|.||||||+++
T Consensus 434 ~~n~~I~G~tGsGKS~~~ 451 (785)
T TIGR00929 434 LGHTLIFGPTGSGKTTLL 451 (785)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 677889999999999987
No 380
>PRK06762 hypothetical protein; Provisional
Probab=21.13 E-value=45 Score=32.84 Aligned_cols=15 Identities=33% Similarity=0.585 Sum_probs=12.3
Q ss_pred eEEEeccCCCCccee
Q 002847 85 CIFAYGQTGTGKSFT 99 (874)
Q Consensus 85 TIfAYGQTGSGKTyT 99 (874)
.|.-.|..|||||+.
T Consensus 4 li~i~G~~GsGKST~ 18 (166)
T PRK06762 4 LIIIRGNSGSGKTTI 18 (166)
T ss_pred EEEEECCCCCCHHHH
Confidence 466789999999863
No 381
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=21.05 E-value=41 Score=33.42 Aligned_cols=15 Identities=40% Similarity=0.510 Sum_probs=12.9
Q ss_pred eEEEeccCCCCccee
Q 002847 85 CIFAYGQTGTGKSFT 99 (874)
Q Consensus 85 TIfAYGQTGSGKTyT 99 (874)
.|...|++|||||..
T Consensus 3 ii~l~G~~GsGKsTl 17 (180)
T TIGR03263 3 LIVISGPSGVGKSTL 17 (180)
T ss_pred EEEEECCCCCCHHHH
Confidence 577899999999874
No 382
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=21.04 E-value=65 Score=34.90 Aligned_cols=17 Identities=35% Similarity=0.403 Sum_probs=14.5
Q ss_pred CeeEEEeccCCCCccee
Q 002847 83 NACIFAYGQTGTGKSFT 99 (874)
Q Consensus 83 N~TIfAYGQTGSGKTyT 99 (874)
..+++.+|.+|+|||.-
T Consensus 36 gs~~lI~G~pGtGKT~l 52 (259)
T TIGR03878 36 YSVINITGVSDTGKSLM 52 (259)
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 56788999999999863
No 383
>PRK04406 hypothetical protein; Provisional
Probab=20.97 E-value=3.9e+02 Score=24.28 Aligned_cols=42 Identities=19% Similarity=0.297 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHh
Q 002847 353 NLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQEQLE 394 (874)
Q Consensus 353 ~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~lqeql~ 394 (874)
.+.+.+..||..+.....-|+.|...+.+.++.+..++.++.
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~ 49 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMK 49 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666666666655555554
No 384
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=20.93 E-value=93 Score=36.76 Aligned_cols=19 Identities=32% Similarity=0.462 Sum_probs=16.2
Q ss_pred CeeEEEeccCCCCcceecc
Q 002847 83 NACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 83 N~TIfAYGQTGSGKTyTM~ 101 (874)
...|+..|.+|+|||+|..
T Consensus 100 ~~vi~lvG~~GvGKTTtaa 118 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCT 118 (429)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4678899999999999963
No 385
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=20.77 E-value=68 Score=31.47 Aligned_cols=20 Identities=20% Similarity=0.139 Sum_probs=15.6
Q ss_pred CCCeeEEEeccCCCCcceec
Q 002847 81 GYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 81 GyN~TIfAYGQTGSGKTyTM 100 (874)
+...+|...|++|.||+..+
T Consensus 100 ~~~~~v~~~G~~nvGKStli 119 (157)
T cd01858 100 KKQISVGFIGYPNVGKSSII 119 (157)
T ss_pred ccceEEEEEeCCCCChHHHH
Confidence 34567778999999998764
No 386
>PRK03839 putative kinase; Provisional
Probab=20.76 E-value=43 Score=33.58 Aligned_cols=14 Identities=36% Similarity=0.510 Sum_probs=12.2
Q ss_pred EEEeccCCCCccee
Q 002847 86 IFAYGQTGTGKSFT 99 (874)
Q Consensus 86 IfAYGQTGSGKTyT 99 (874)
|+-.|..|||||+.
T Consensus 3 I~l~G~pGsGKsT~ 16 (180)
T PRK03839 3 IAITGTPGVGKTTV 16 (180)
T ss_pred EEEECCCCCCHHHH
Confidence 67889999999874
No 387
>PRK00295 hypothetical protein; Provisional
Probab=20.73 E-value=3.2e+02 Score=24.27 Aligned_cols=44 Identities=9% Similarity=0.127 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHh
Q 002847 351 MKNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQEQLE 394 (874)
Q Consensus 351 ~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~lqeql~ 394 (874)
+..|+.++.-+++-+..|.+.+...+..|..+++....+.++++
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~ 50 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQE 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455544544444444444444444444444444444443
No 388
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=20.73 E-value=2.6e+02 Score=28.06 Aligned_cols=45 Identities=13% Similarity=0.278 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHhh
Q 002847 351 MKNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQEQLEV 395 (874)
Q Consensus 351 ~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~lqeql~~ 395 (874)
+...++.+..+++|+.-|+..+-.+++..++-++.+..+++||+.
T Consensus 80 l~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~~ 124 (126)
T PF13118_consen 80 LDAKDETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQLKI 124 (126)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 445567788889999999999999999999888888888888864
No 389
>PRK00300 gmk guanylate kinase; Provisional
Probab=20.54 E-value=42 Score=34.16 Aligned_cols=17 Identities=35% Similarity=0.438 Sum_probs=13.7
Q ss_pred CeeEEEeccCCCCccee
Q 002847 83 NACIFAYGQTGTGKSFT 99 (874)
Q Consensus 83 N~TIfAYGQTGSGKTyT 99 (874)
...|.-.|++|||||..
T Consensus 5 g~~i~i~G~sGsGKstl 21 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTL 21 (205)
T ss_pred CCEEEEECCCCCCHHHH
Confidence 34678889999999964
No 390
>PRK04325 hypothetical protein; Provisional
Probab=20.54 E-value=3.6e+02 Score=24.37 Aligned_cols=43 Identities=12% Similarity=0.172 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q 002847 351 MKNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQEQL 393 (874)
Q Consensus 351 ~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~lqeql 393 (874)
+..|+.++.-+++-+..|.+.+...+..|..|++....+.+++
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl 53 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQM 53 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555445444445544444444444443
No 391
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=20.42 E-value=74 Score=39.59 Aligned_cols=17 Identities=35% Similarity=0.710 Sum_probs=14.5
Q ss_pred eeEEEeccCCCCcceec
Q 002847 84 ACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 84 ~TIfAYGQTGSGKTyTM 100 (874)
..|+-||++|+|||+.+
T Consensus 213 ~giLL~GppGtGKT~la 229 (733)
T TIGR01243 213 KGVLLYGPPGTGKTLLA 229 (733)
T ss_pred ceEEEECCCCCChHHHH
Confidence 45899999999999764
No 392
>KOG0987 consensus DNA helicase PIF1/RRM3 [Cell cycle control, cell division, chromosome partitioning]
Probab=20.34 E-value=77 Score=38.26 Aligned_cols=35 Identities=29% Similarity=0.678 Sum_probs=23.8
Q ss_pred CChHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 62 SSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 62 asQeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
..|..||+. ++..|.+..-..+| ||.-|+||||-.
T Consensus 120 ~eqk~v~d~---~~~~v~~~~g~~ff-~g~~gtgKt~l~ 154 (540)
T KOG0987|consen 120 PEQKRVYDA---ILEAVENNLGGVFF-YGFGGTGKTYLL 154 (540)
T ss_pred HHHHHHHHH---HHHHHhccccceee-eccCCccceeeH
Confidence 356666663 33445555566677 999999999863
No 393
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.33 E-value=70 Score=38.19 Aligned_cols=35 Identities=23% Similarity=0.246 Sum_probs=21.3
Q ss_pred ChHHHHHhhHHHHHHhhcC-CCeeEEEeccCCCCcceec
Q 002847 63 SQDEVFSEVEPVIKSVLDG-YNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 63 sQeeVF~~V~PlV~svLdG-yN~TIfAYGQTGSGKTyTM 100 (874)
.|+.+...+...+. .| ....++-||+.|+|||++.
T Consensus 20 Gq~~i~~~L~~~i~---~~~i~hayLf~Gp~G~GKTtlA 55 (486)
T PRK14953 20 GQEIVVRILKNAVK---LQRVSHAYIFAGPRGTGKTTIA 55 (486)
T ss_pred ChHHHHHHHHHHHH---cCCCCeEEEEECCCCCCHHHHH
Confidence 45555544443332 23 3345667999999997653
No 394
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=20.29 E-value=45 Score=32.08 Aligned_cols=17 Identities=24% Similarity=0.411 Sum_probs=13.8
Q ss_pred eeEEEeccCCCCcceec
Q 002847 84 ACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 84 ~TIfAYGQTGSGKTyTM 100 (874)
-.+.-.|++|||||.++
T Consensus 16 e~v~I~GpSGsGKSTLl 32 (107)
T cd00820 16 VGVLITGDSGIGKTELA 32 (107)
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 34677899999999875
No 395
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=20.25 E-value=70 Score=36.15 Aligned_cols=27 Identities=26% Similarity=0.381 Sum_probs=20.8
Q ss_pred CeeEEEeccCCCCcceeccCCCCCCCcHHHHHHHHHH
Q 002847 83 NACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFK 119 (874)
Q Consensus 83 N~TIfAYGQTGSGKTyTM~Gs~e~~GIIPRaledLF~ 119 (874)
-+||++.|..|||||.-| .|...+|++
T Consensus 19 p~~ilVvGMAGSGKTTF~----------QrL~~hl~~ 45 (366)
T KOG1532|consen 19 PVIILVVGMAGSGKTTFM----------QRLNSHLHA 45 (366)
T ss_pred CcEEEEEecCCCCchhHH----------HHHHHHHhh
Confidence 569999999999999754 556666554
No 396
>PRK06851 hypothetical protein; Provisional
Probab=20.18 E-value=54 Score=37.90 Aligned_cols=28 Identities=39% Similarity=0.567 Sum_probs=22.9
Q ss_pred HHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 73 PVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 73 PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
.+.+++++|.+-.++-.|.+|+|||++|
T Consensus 20 s~~~~~~~~~~~~~il~G~pGtGKStl~ 47 (367)
T PRK06851 20 SLYDSIIDGANRIFILKGGPGTGKSTLM 47 (367)
T ss_pred hhhhhhccccceEEEEECCCCCCHHHHH
Confidence 3455666788888999999999999876
No 397
>PRK14127 cell division protein GpsB; Provisional
Probab=20.17 E-value=2.2e+02 Score=27.75 Aligned_cols=35 Identities=14% Similarity=0.318 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 002847 351 MKNLQQKMKKIEEERLRVRGEIENLSEKLEALTRP 385 (874)
Q Consensus 351 ~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~ 385 (874)
+..+.+.+..+..|+..|+.++..|+.+++++...
T Consensus 32 Ld~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~ 66 (109)
T PRK14127 32 LDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQ 66 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555555566666666666666666655443
No 398
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=20.15 E-value=2.5e+02 Score=27.14 Aligned_cols=45 Identities=22% Similarity=0.360 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHhh
Q 002847 351 MKNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQEQLEV 395 (874)
Q Consensus 351 ~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~lqeql~~ 395 (874)
+..+.+++..+-.++..|+.++..|-++-.+|+.++..+.+.+..
T Consensus 10 l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~ 54 (107)
T PF06156_consen 10 LDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEE 54 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555555543
No 399
>PRK14530 adenylate kinase; Provisional
Probab=20.08 E-value=45 Score=34.65 Aligned_cols=15 Identities=33% Similarity=0.541 Sum_probs=12.7
Q ss_pred eEEEeccCCCCccee
Q 002847 85 CIFAYGQTGTGKSFT 99 (874)
Q Consensus 85 TIfAYGQTGSGKTyT 99 (874)
.|+..|++|||||+.
T Consensus 5 ~I~i~G~pGsGKsT~ 19 (215)
T PRK14530 5 RILLLGAPGAGKGTQ 19 (215)
T ss_pred EEEEECCCCCCHHHH
Confidence 477899999999865
No 400
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=20.03 E-value=2.5e+02 Score=24.85 Aligned_cols=35 Identities=20% Similarity=0.271 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH
Q 002847 358 MKKIEEERLRVRGEIENLSEKLEALTRPAHSFQEQ 392 (874)
Q Consensus 358 ik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~lqeq 392 (874)
+.+||..+.....-|+.|...+.+.++.+..++.+
T Consensus 6 i~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~ 40 (69)
T PF04102_consen 6 IEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQ 40 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444433333333333333
Done!