Query 002847
Match_columns 874
No_of_seqs 328 out of 1969
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 03:57:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002847.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002847hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cob_A Kinesin heavy chain-lik 100.0 1.8E-87 6.3E-92 738.5 28.9 331 5-340 1-334 (369)
2 2h58_A Kinesin-like protein KI 100.0 5.5E-86 1.9E-90 717.5 31.1 325 6-335 1-330 (330)
3 2vvg_A Kinesin-2; motor protei 100.0 1.6E-85 5.5E-90 718.7 26.2 325 7-340 2-342 (350)
4 3lre_A Kinesin-like protein KI 100.0 3E-85 1E-89 717.9 28.3 322 3-333 4-355 (355)
5 1goj_A Kinesin, kinesin heavy 100.0 3.9E-85 1.3E-89 717.0 29.2 329 4-340 1-337 (355)
6 3bfn_A Kinesin-like protein KI 100.0 3.2E-85 1.1E-89 724.2 26.1 329 3-339 15-353 (388)
7 2y65_A Kinesin, kinesin heavy 100.0 2.9E-85 1E-89 720.2 25.1 326 4-340 6-340 (365)
8 1bg2_A Kinesin; motor protein, 100.0 2.2E-85 7.6E-90 711.4 23.4 317 5-333 3-325 (325)
9 3t0q_A AGR253WP; kinesin, alph 100.0 3.3E-84 1.1E-88 708.2 31.4 330 6-337 2-348 (349)
10 2rep_A Kinesin-like protein KI 100.0 1.8E-84 6E-89 716.3 29.1 329 2-333 15-376 (376)
11 1t5c_A CENP-E protein, centrom 100.0 2.6E-84 8.9E-89 709.0 28.9 325 7-341 2-336 (349)
12 1x88_A Kinesin-like protein KI 100.0 6E-85 2.1E-89 716.4 22.0 329 6-339 5-356 (359)
13 2owm_A Nckin3-434, related to 100.0 8.9E-84 3E-88 723.6 29.9 332 4-340 33-420 (443)
14 3b6u_A Kinesin-like protein KI 100.0 2.6E-84 9E-89 713.9 25.1 332 3-341 15-361 (372)
15 2zfi_A Kinesin-like protein KI 100.0 4.1E-84 1.4E-88 711.4 26.5 323 8-337 3-358 (366)
16 1f9v_A Kinesin-like protein KA 100.0 1.6E-83 5.4E-88 702.3 29.6 327 7-337 1-345 (347)
17 2wbe_C Bipolar kinesin KRP-130 100.0 2.7E-84 9.3E-89 714.3 23.6 328 6-340 20-368 (373)
18 3u06_A Protein claret segregat 100.0 1.3E-83 4.4E-88 716.7 26.8 330 2-341 52-390 (412)
19 4a14_A Kinesin, kinesin-like p 100.0 1.5E-83 5.2E-88 701.7 26.6 319 5-331 7-344 (344)
20 3gbj_A KIF13B protein; kinesin 100.0 3.3E-83 1.1E-87 701.5 25.5 319 9-333 1-350 (354)
21 4etp_A Kinesin-like protein KA 100.0 9.8E-83 3.3E-87 708.2 29.3 334 2-337 52-401 (403)
22 3nwn_A Kinesin-like protein KI 100.0 3E-82 1E-86 695.0 26.0 320 6-333 21-359 (359)
23 2heh_A KIF2C protein; kinesin, 100.0 2.8E-82 9.6E-87 700.5 24.4 314 8-335 50-384 (387)
24 2nr8_A Kinesin-like protein KI 100.0 8E-82 2.7E-86 691.4 26.1 320 5-333 19-358 (358)
25 1ry6_A Internal kinesin; kines 100.0 7.4E-82 2.5E-86 692.1 24.9 316 10-337 1-335 (360)
26 1v8k_A Kinesin-like protein KI 100.0 9.2E-82 3.1E-86 700.5 23.9 316 8-337 70-406 (410)
27 3dc4_A Kinesin-like protein NO 100.0 5.8E-80 2E-84 673.5 25.8 305 6-335 19-337 (344)
28 4h1g_A Maltose binding protein 100.0 2.6E-76 9E-81 695.7 31.8 325 4-335 369-713 (715)
29 3kin_B Kinesin heavy chain; mo 99.9 1.2E-26 4.1E-31 218.6 9.6 115 263-383 1-116 (117)
30 2o0a_A S.cerevisiae chromosome 99.9 8.5E-27 2.9E-31 246.9 6.7 266 2-335 17-291 (298)
31 2kin_B Kinesin; motor protein, 99.9 2.6E-26 9.1E-31 210.8 4.7 81 260-340 2-83 (100)
32 4etp_B Spindle POLE BODY-assoc 94.8 0.065 2.2E-06 58.2 8.5 124 3-150 53-184 (333)
33 3ec2_A DNA replication protein 94.2 0.0092 3.1E-07 57.5 0.2 51 50-100 5-55 (180)
34 2w58_A DNAI, primosome compone 93.0 0.031 1.1E-06 54.5 1.8 51 50-100 20-71 (202)
35 2qgz_A Helicase loader, putati 90.6 0.083 2.8E-06 56.3 1.9 51 51-101 120-170 (308)
36 2bjv_A PSP operon transcriptio 83.5 0.32 1.1E-05 49.5 1.2 45 51-100 2-46 (265)
37 3bos_A Putative DNA replicatio 83.1 0.43 1.5E-05 46.6 1.9 45 52-100 25-69 (242)
38 1jbk_A CLPB protein; beta barr 82.6 0.6 2.1E-05 43.4 2.6 30 71-100 31-60 (195)
39 1l8q_A Chromosomal replication 81.3 0.61 2.1E-05 49.0 2.4 49 50-100 6-54 (324)
40 2p65_A Hypothetical protein PF 79.6 0.7 2.4E-05 43.1 1.9 30 71-100 31-60 (187)
41 1d2n_A N-ethylmaleimide-sensit 79.2 0.7 2.4E-05 47.3 1.9 47 54-100 32-81 (272)
42 2r62_A Cell division protease 78.9 0.79 2.7E-05 46.5 2.2 51 50-100 6-61 (268)
43 3h4m_A Proteasome-activating n 77.6 0.93 3.2E-05 46.3 2.3 51 50-100 12-68 (285)
44 3uk6_A RUVB-like 2; hexameric 77.5 1.1 3.7E-05 47.5 2.8 46 51-100 40-87 (368)
45 3syl_A Protein CBBX; photosynt 76.7 1.4 4.7E-05 45.5 3.3 20 81-100 65-84 (309)
46 3te6_A Regulatory protein SIR3 76.4 0.92 3.2E-05 49.1 1.9 30 71-100 32-62 (318)
47 2v1u_A Cell division control p 74.5 0.79 2.7E-05 48.2 0.8 39 62-100 22-61 (387)
48 3t15_A Ribulose bisphosphate c 74.5 1.4 4.8E-05 46.3 2.7 35 66-100 14-53 (293)
49 1fnn_A CDC6P, cell division co 74.3 1.3 4.6E-05 46.7 2.5 39 62-100 20-61 (389)
50 2kjq_A DNAA-related protein; s 73.8 0.94 3.2E-05 43.1 1.1 42 50-100 12-53 (149)
51 2qz4_A Paraplegin; AAA+, SPG7, 73.8 2 6.9E-05 42.9 3.6 44 53-100 4-56 (262)
52 1g8p_A Magnesium-chelatase 38 73.5 0.93 3.2E-05 47.5 1.0 44 50-100 19-62 (350)
53 2z4s_A Chromosomal replication 73.2 1.3 4.5E-05 49.4 2.2 49 50-101 100-148 (440)
54 2c9o_A RUVB-like 1; hexameric 73.0 1.8 6.2E-05 48.2 3.3 47 50-100 32-80 (456)
55 1ixz_A ATP-dependent metallopr 72.0 1.4 4.7E-05 44.5 1.8 51 50-100 11-66 (254)
56 1qde_A EIF4A, translation init 71.7 1.6 5.5E-05 42.8 2.2 25 73-99 43-67 (224)
57 1hjb_A Ccaat/enhancer binding 71.1 4 0.00014 36.7 4.4 47 343-389 30-76 (87)
58 1vec_A ATP-dependent RNA helic 70.7 1.9 6.4E-05 41.7 2.4 25 74-100 33-57 (206)
59 2gxq_A Heat resistant RNA depe 70.4 1.8 6.3E-05 41.6 2.3 24 74-99 31-54 (207)
60 4b4t_K 26S protease regulatory 70.0 7.4 0.00025 43.8 7.3 128 3-130 108-270 (428)
61 4b4t_M 26S protease regulatory 69.5 9.4 0.00032 43.1 8.0 74 52-125 178-274 (434)
62 2chg_A Replication factor C sm 68.7 2.2 7.6E-05 40.5 2.4 34 64-100 22-55 (226)
63 4gkp_A Spindle POLE BODY-assoc 68.3 26 0.00089 37.5 10.6 262 2-335 6-271 (275)
64 2qby_B CDC6 homolog 3, cell di 68.0 2.9 9.9E-05 44.2 3.3 38 63-100 24-62 (384)
65 1gu4_A CAAT/enhancer binding p 67.9 7.8 0.00027 34.1 5.4 45 343-387 30-74 (78)
66 3cf0_A Transitional endoplasmi 67.9 1.7 5.7E-05 45.6 1.4 50 51-100 11-66 (301)
67 3co5_A Putative two-component 67.7 2.7 9.2E-05 39.1 2.7 34 67-101 12-45 (143)
68 3dkp_A Probable ATP-dependent 67.4 2.3 7.8E-05 42.5 2.3 25 73-99 58-82 (245)
69 3pfi_A Holliday junction ATP-d 66.9 2.7 9.1E-05 44.1 2.8 44 53-100 27-72 (338)
70 1lv7_A FTSH; alpha/beta domain 65.7 3.1 0.00011 41.9 2.9 47 50-100 7-62 (257)
71 3bor_A Human initiation factor 65.5 1.6 5.4E-05 43.8 0.7 26 73-100 59-84 (237)
72 1sxj_C Activator 1 40 kDa subu 65.2 2.5 8.6E-05 44.7 2.2 41 53-100 23-63 (340)
73 1p9r_A General secretion pathw 64.6 2.7 9.3E-05 47.0 2.4 28 73-100 157-184 (418)
74 2pl3_A Probable ATP-dependent 64.4 2.8 9.7E-05 41.5 2.3 25 73-99 54-78 (236)
75 1iy2_A ATP-dependent metallopr 63.9 2.2 7.6E-05 43.9 1.4 47 50-100 35-90 (278)
76 4fcw_A Chaperone protein CLPB; 63.4 3.7 0.00013 42.2 3.0 38 63-100 21-64 (311)
77 1hqc_A RUVB; extended AAA-ATPa 63.4 3.4 0.00012 42.7 2.8 45 52-100 9-55 (324)
78 1t6n_A Probable ATP-dependent 63.0 3.1 0.00011 40.7 2.3 26 73-100 43-68 (220)
79 2qby_A CDC6 homolog 1, cell di 62.9 2 6.8E-05 45.0 0.9 37 64-100 25-62 (386)
80 1njg_A DNA polymerase III subu 62.6 4 0.00014 39.0 2.9 34 64-100 28-62 (250)
81 3iuy_A Probable ATP-dependent 62.2 3.2 0.00011 40.9 2.2 26 73-100 49-74 (228)
82 2xdj_A Uncharacterized protein 62.1 13 0.00046 32.9 5.9 46 350-395 21-66 (83)
83 4b4t_L 26S protease subunit RP 61.8 23 0.00079 40.0 9.3 74 52-125 178-274 (437)
84 3n70_A Transport activator; si 61.6 4.5 0.00015 37.6 3.0 19 81-99 22-40 (145)
85 3jvv_A Twitching mobility prot 61.3 3 0.0001 45.6 1.9 28 73-100 113-140 (356)
86 1wrb_A DJVLGB; RNA helicase, D 61.2 3.4 0.00012 41.5 2.2 25 74-100 53-77 (253)
87 3b6e_A Interferon-induced heli 61.2 1.7 5.9E-05 41.8 0.0 24 75-100 42-65 (216)
88 1iqp_A RFCS; clamp loader, ext 60.4 5 0.00017 41.2 3.3 35 63-100 29-63 (327)
89 1t2k_D Cyclic-AMP-dependent tr 59.9 23 0.00079 29.2 6.6 41 344-384 17-57 (61)
90 3pvs_A Replication-associated 59.5 3.2 0.00011 46.6 1.8 39 62-100 29-67 (447)
91 4b4t_J 26S protease regulatory 59.5 21 0.0007 40.1 8.2 74 52-125 145-241 (405)
92 1ofh_A ATP-dependent HSL prote 59.5 4.5 0.00015 41.3 2.7 18 83-100 50-67 (310)
93 1w5s_A Origin recognition comp 59.4 3.9 0.00013 43.6 2.4 36 65-100 28-69 (412)
94 3eiq_A Eukaryotic initiation f 58.9 4 0.00014 43.3 2.3 26 73-100 69-94 (414)
95 3hnw_A Uncharacterized protein 58.9 19 0.00064 34.7 6.8 40 353-392 79-118 (138)
96 3fmo_B ATP-dependent RNA helic 58.7 3.8 0.00013 43.1 2.1 28 73-100 121-148 (300)
97 3fe2_A Probable ATP-dependent 58.7 3.6 0.00012 41.2 1.9 25 74-100 59-83 (242)
98 3ly5_A ATP-dependent RNA helic 58.2 3.4 0.00012 42.3 1.6 25 73-99 83-107 (262)
99 2oxc_A Probable ATP-dependent 58.0 4.2 0.00014 40.4 2.2 24 74-99 54-77 (230)
100 1u0j_A DNA replication protein 57.9 5.3 0.00018 42.4 3.0 29 72-100 90-121 (267)
101 1jnm_A Proto-oncogene C-JUN; B 57.7 19 0.00066 29.8 5.8 42 344-385 17-58 (62)
102 3llm_A ATP-dependent RNA helic 57.1 3.7 0.00013 41.2 1.6 26 73-100 68-93 (235)
103 3ber_A Probable ATP-dependent 57.0 4.5 0.00015 41.1 2.3 26 73-100 72-97 (249)
104 3u61_B DNA polymerase accessor 56.1 5.9 0.0002 41.3 3.0 41 53-100 24-65 (324)
105 1gvn_B Zeta; postsegregational 55.5 11 0.00037 39.6 4.9 37 63-99 8-49 (287)
106 2wt7_A Proto-oncogene protein 55.1 28 0.00096 29.0 6.4 41 344-384 18-58 (63)
107 3vfd_A Spastin; ATPase, microt 54.9 3.4 0.00012 44.8 1.0 18 83-100 148-165 (389)
108 3b9p_A CG5977-PA, isoform A; A 54.7 5.6 0.00019 40.8 2.6 51 50-100 16-71 (297)
109 1jr3_A DNA polymerase III subu 54.1 7.2 0.00025 40.9 3.3 36 63-100 20-55 (373)
110 3fht_A ATP-dependent RNA helic 53.9 5.1 0.00017 42.4 2.1 28 73-100 54-81 (412)
111 1q0u_A Bstdead; DEAD protein, 53.8 3.2 0.00011 40.8 0.5 24 74-99 34-57 (219)
112 3pey_A ATP-dependent RNA helic 53.3 5.1 0.00017 41.9 2.0 27 74-100 35-61 (395)
113 2j0s_A ATP-dependent RNA helic 53.3 5.2 0.00018 42.7 2.1 26 73-100 66-91 (410)
114 3d8b_A Fidgetin-like protein 1 52.9 5.8 0.0002 42.7 2.4 46 51-100 80-134 (357)
115 2eyu_A Twitching motility prot 52.8 5 0.00017 41.8 1.8 20 81-100 23-42 (261)
116 1sxj_D Activator 1 41 kDa subu 52.7 5.2 0.00018 41.7 1.9 27 74-100 49-75 (353)
117 3fmp_B ATP-dependent RNA helic 52.0 6.4 0.00022 43.4 2.6 27 73-99 121-147 (479)
118 1xwi_A SKD1 protein; VPS4B, AA 51.8 6.3 0.00022 41.9 2.4 49 52-100 9-62 (322)
119 4b3f_X DNA-binding protein smu 51.1 5.4 0.00018 46.5 1.9 27 74-101 197-223 (646)
120 3h1t_A Type I site-specific re 50.8 6.7 0.00023 44.7 2.6 28 73-101 189-216 (590)
121 4b4t_I 26S protease regulatory 50.2 52 0.0018 37.3 9.6 43 83-125 216-275 (437)
122 2z0m_A 337AA long hypothetical 50.1 6.3 0.00022 40.3 2.1 25 74-100 24-48 (337)
123 3nmd_A CGMP dependent protein 50.1 33 0.0011 29.9 6.1 33 362-394 32-64 (72)
124 2x8a_A Nuclear valosin-contain 49.7 2.6 8.8E-05 44.0 -1.0 49 52-100 7-61 (274)
125 2fz4_A DNA repair protein RAD2 49.5 6.2 0.00021 40.0 1.9 24 75-100 102-125 (237)
126 1s2m_A Putative ATP-dependent 49.3 6.2 0.00021 41.8 1.9 26 73-100 50-75 (400)
127 2chq_A Replication factor C sm 49.2 3.4 0.00012 42.3 -0.1 21 80-100 35-55 (319)
128 1tue_A Replication protein E1; 48.9 6.5 0.00022 40.6 1.9 28 74-101 47-76 (212)
129 1ci6_A Transcription factor AT 48.9 40 0.0014 28.2 6.4 39 345-383 19-57 (63)
130 1ojl_A Transcriptional regulat 48.6 8.4 0.00029 40.6 2.8 32 67-99 10-41 (304)
131 2i4i_A ATP-dependent RNA helic 48.4 7 0.00024 41.6 2.1 25 74-100 45-69 (417)
132 3eie_A Vacuolar protein sortin 47.3 6.9 0.00024 41.2 1.9 45 52-100 15-68 (322)
133 3pxi_A Negative regulator of g 45.8 11 0.00036 44.8 3.3 37 63-99 495-537 (758)
134 3oiy_A Reverse gyrase helicase 45.4 8.2 0.00028 41.5 2.1 24 74-99 29-52 (414)
135 1sxj_E Activator 1 40 kDa subu 45.0 4.3 0.00015 42.6 -0.1 15 86-100 39-53 (354)
136 2dgc_A Protein (GCN4); basic d 44.6 33 0.0011 28.8 5.2 35 345-379 26-60 (63)
137 2qp9_X Vacuolar protein sortin 44.6 5.9 0.0002 42.7 0.8 50 51-100 47-101 (355)
138 2ewv_A Twitching motility prot 44.2 5.9 0.0002 43.3 0.8 27 74-100 127-153 (372)
139 3hws_A ATP-dependent CLP prote 44.0 9 0.00031 40.9 2.2 18 83-100 51-68 (363)
140 1r6b_X CLPA protein; AAA+, N-t 44.0 12 0.00043 44.0 3.5 37 64-100 463-505 (758)
141 1xti_A Probable ATP-dependent 43.9 9 0.00031 40.2 2.1 26 73-100 37-62 (391)
142 1nkp_B MAX protein, MYC proto- 43.8 43 0.0015 29.0 6.1 35 349-383 47-81 (83)
143 1in4_A RUVB, holliday junction 43.7 11 0.00038 40.0 2.8 44 53-100 23-68 (334)
144 1gd2_E Transcription factor PA 43.2 23 0.00079 30.5 4.1 37 346-382 26-62 (70)
145 4b4t_H 26S protease regulatory 42.7 14 0.00048 42.2 3.5 74 52-125 206-302 (467)
146 1qvr_A CLPB protein; coiled co 42.6 12 0.00041 45.1 3.1 37 64-100 563-605 (854)
147 2oap_1 GSPE-2, type II secreti 42.6 9.5 0.00033 43.7 2.2 20 79-100 258-277 (511)
148 2r44_A Uncharacterized protein 42.0 6.4 0.00022 41.2 0.6 17 84-100 47-63 (331)
149 1n0w_A DNA repair protein RAD5 41.6 10 0.00035 37.2 2.0 28 73-100 11-41 (243)
150 1qvr_A CLPB protein; coiled co 41.5 6.7 0.00023 47.3 0.7 43 53-102 168-210 (854)
151 3hnw_A Uncharacterized protein 40.7 50 0.0017 31.8 6.5 42 351-392 84-125 (138)
152 1um8_A ATP-dependent CLP prote 40.7 8.5 0.00029 41.3 1.3 18 83-100 72-89 (376)
153 3fho_A ATP-dependent RNA helic 40.6 10 0.00034 42.7 1.9 26 74-99 149-174 (508)
154 4a2p_A RIG-I, retinoic acid in 40.5 11 0.00038 41.6 2.3 25 74-100 15-39 (556)
155 3i5x_A ATP-dependent RNA helic 40.0 14 0.00049 41.4 3.1 27 73-99 101-127 (563)
156 1nlw_A MAD protein, MAX dimeri 39.8 50 0.0017 28.8 5.8 34 349-382 47-80 (80)
157 1dh3_A Transcription factor CR 39.3 27 0.00091 28.6 3.7 33 345-377 18-50 (55)
158 1rif_A DAR protein, DNA helica 39.2 7.1 0.00024 40.0 0.4 25 74-100 121-145 (282)
159 2db3_A ATP-dependent RNA helic 39.2 14 0.00047 40.6 2.7 26 73-100 85-110 (434)
160 1go4_E MAD1 (mitotic arrest de 38.9 42 0.0014 30.9 5.3 33 350-382 13-45 (100)
161 1w36_D RECD, exodeoxyribonucle 38.8 11 0.00037 43.9 1.9 25 75-101 158-182 (608)
162 3upu_A ATP-dependent DNA helic 38.4 13 0.00044 41.4 2.3 36 61-100 27-62 (459)
163 1hv8_A Putative ATP-dependent 38.4 11 0.00038 38.9 1.7 26 74-100 36-61 (367)
164 3tbk_A RIG-I helicase domain; 38.3 13 0.00044 40.9 2.3 25 74-100 12-36 (555)
165 3pxg_A Negative regulator of g 37.9 13 0.00045 41.6 2.3 42 53-101 178-219 (468)
166 1sxj_B Activator 1 37 kDa subu 37.8 13 0.00046 37.9 2.2 34 64-100 26-59 (323)
167 3mq7_A Bone marrow stromal ant 37.8 37 0.0013 32.0 4.9 39 355-393 70-108 (121)
168 1sxj_A Activator 1 95 kDa subu 37.7 8.3 0.00028 43.7 0.7 18 83-100 77-94 (516)
169 1fuu_A Yeast initiation factor 37.5 7.6 0.00026 40.8 0.3 26 73-100 50-75 (394)
170 2v1x_A ATP-dependent DNA helic 37.5 18 0.0006 42.1 3.3 25 73-99 51-75 (591)
171 2yy0_A C-MYC-binding protein; 37.4 40 0.0014 27.5 4.5 30 351-380 21-50 (53)
172 2l5g_B Putative uncharacterize 37.2 50 0.0017 26.0 4.7 32 353-384 6-37 (42)
173 2w0m_A SSO2452; RECA, SSPF, un 37.1 12 0.00042 36.1 1.7 28 73-100 10-40 (235)
174 3lfu_A DNA helicase II; SF1 he 36.9 11 0.00038 43.1 1.6 23 79-101 18-40 (647)
175 2gk6_A Regulator of nonsense t 36.7 13 0.00043 43.4 2.0 26 74-101 188-213 (624)
176 2zan_A Vacuolar protein sortin 36.7 11 0.00038 42.0 1.4 46 51-100 130-184 (444)
177 3e70_C DPA, signal recognition 36.7 23 0.0008 38.1 3.9 18 83-100 129-146 (328)
178 2cvh_A DNA repair and recombin 36.3 14 0.00048 35.6 1.9 28 73-100 7-37 (220)
179 3hu3_A Transitional endoplasmi 36.3 15 0.00053 41.7 2.6 20 81-100 236-255 (489)
180 2yy0_A C-MYC-binding protein; 35.7 31 0.0011 28.2 3.6 30 365-394 21-50 (53)
181 3b9q_A Chloroplast SRP recepto 35.6 23 0.00079 37.6 3.7 17 84-100 101-117 (302)
182 2fwr_A DNA repair protein RAD2 35.3 14 0.00047 40.5 1.9 25 74-100 101-125 (472)
183 2ce7_A Cell division protein F 35.0 19 0.00065 41.0 3.0 47 50-100 11-66 (476)
184 1kd8_B GABH BLL, GCN4 acid bas 34.6 84 0.0029 23.9 5.4 31 351-381 3-33 (36)
185 2p5t_B PEZT; postsegregational 34.6 30 0.001 35.1 4.2 29 71-99 15-48 (253)
186 4gl2_A Interferon-induced heli 34.4 15 0.0005 42.5 2.0 25 74-100 15-39 (699)
187 3lw7_A Adenylate kinase relate 34.1 12 0.00041 34.2 1.0 15 85-99 3-17 (179)
188 4a74_A DNA repair and recombin 33.2 18 0.00061 35.1 2.1 28 73-100 12-42 (231)
189 2ykg_A Probable ATP-dependent 32.4 20 0.00068 41.3 2.7 24 74-99 21-44 (696)
190 3ra3_B P2F; coiled coil domain 32.2 46 0.0016 23.4 3.4 23 360-382 4-26 (28)
191 4dzn_A Coiled-coil peptide CC- 32.2 58 0.002 23.7 4.0 23 353-375 6-28 (33)
192 2dhr_A FTSH; AAA+ protein, hex 32.1 24 0.0008 40.4 3.2 47 50-100 26-81 (499)
193 1wp9_A ATP-dependent RNA helic 31.9 16 0.00056 38.6 1.8 25 74-101 17-41 (494)
194 3sqw_A ATP-dependent RNA helic 31.9 23 0.00079 40.3 3.1 27 73-99 50-76 (579)
195 4gp7_A Metallophosphoesterase; 31.7 12 0.00041 35.7 0.6 17 85-101 11-27 (171)
196 1c4o_A DNA nucleotide excision 31.5 26 0.00089 41.2 3.5 46 52-102 2-47 (664)
197 2qnr_A Septin-2, protein NEDD5 30.5 13 0.00045 39.2 0.7 24 77-100 12-35 (301)
198 1nkp_A C-MYC, MYC proto-oncoge 30.4 1.2E+02 0.0042 26.7 6.9 36 349-384 52-87 (88)
199 2dr3_A UPF0273 protein PH0284; 30.3 18 0.00062 35.4 1.7 26 75-100 12-40 (247)
200 1t2k_D Cyclic-AMP-dependent tr 30.0 69 0.0024 26.3 4.9 40 354-393 20-59 (61)
201 4dzn_A Coiled-coil peptide CC- 29.8 90 0.0031 22.7 4.7 27 357-383 3-29 (33)
202 3b85_A Phosphate starvation-in 29.8 20 0.00068 36.0 1.9 25 74-100 15-39 (208)
203 3cve_A Homer protein homolog 1 29.8 81 0.0028 27.4 5.4 28 355-382 6-33 (72)
204 3c8u_A Fructokinase; YP_612366 29.8 24 0.00081 34.5 2.4 29 72-100 9-39 (208)
205 2jee_A YIIU; FTSZ, septum, coi 29.7 1.2E+02 0.0042 26.9 6.6 22 353-374 24-45 (81)
206 4ag6_A VIRB4 ATPase, type IV s 29.7 13 0.00043 40.3 0.4 18 83-100 35-52 (392)
207 2qag_C Septin-7; cell cycle, c 29.5 14 0.00049 41.2 0.8 23 78-100 26-48 (418)
208 1rz3_A Hypothetical protein rb 29.3 25 0.00084 34.3 2.4 29 72-100 8-39 (201)
209 2og2_A Putative signal recogni 29.3 35 0.0012 37.4 3.8 17 84-100 158-174 (359)
210 1kd8_A GABH AIV, GCN4 acid bas 29.2 84 0.0029 23.9 4.6 31 351-381 3-33 (36)
211 2xzl_A ATP-dependent helicase 29.1 19 0.00066 43.4 1.9 26 74-101 368-393 (802)
212 1r6b_X CLPA protein; AAA+, N-t 29.1 23 0.0008 41.7 2.6 30 72-101 196-225 (758)
213 3tr0_A Guanylate kinase, GMP k 29.1 14 0.00048 35.3 0.6 16 85-100 9-24 (205)
214 2wq1_A General control protein 28.9 1.1E+02 0.0036 23.0 5.0 28 351-378 2-29 (33)
215 3pxi_A Negative regulator of g 28.8 29 0.00099 41.1 3.3 28 73-100 191-218 (758)
216 1e9r_A Conjugal transfer prote 28.8 12 0.00043 40.8 0.2 18 83-100 53-70 (437)
217 1ly1_A Polynucleotide kinase; 28.8 16 0.00056 33.9 1.0 16 84-99 3-18 (181)
218 3gp4_A Transcriptional regulat 28.7 1.9E+02 0.0063 27.4 8.3 68 317-384 42-116 (142)
219 1lkx_A Myosin IE heavy chain; 28.7 27 0.00091 41.8 2.9 35 66-100 76-111 (697)
220 2px0_A Flagellar biosynthesis 28.6 20 0.00067 38.0 1.6 18 84-101 106-123 (296)
221 1a5t_A Delta prime, HOLB; zinc 28.3 29 0.00097 36.8 2.9 34 64-100 7-41 (334)
222 2wjy_A Regulator of nonsense t 28.3 21 0.00071 43.2 2.0 26 74-101 364-389 (800)
223 3e1s_A Exodeoxyribonuclease V, 28.0 22 0.00074 41.2 2.0 26 74-101 197-222 (574)
224 3m91_A Proteasome-associated A 27.9 1.2E+02 0.0042 24.6 5.8 33 351-383 18-50 (51)
225 3tau_A Guanylate kinase, GMP k 27.6 18 0.00062 35.5 1.1 17 84-100 9-25 (208)
226 1kgd_A CASK, peripheral plasma 27.3 16 0.00053 35.1 0.6 16 85-100 7-22 (180)
227 1zp6_A Hypothetical protein AT 27.1 16 0.00055 34.6 0.6 17 84-100 10-26 (191)
228 2wt7_A Proto-oncogene protein 27.1 88 0.003 26.0 5.0 42 352-393 19-60 (63)
229 3c3g_A Alpha/beta peptide with 27.1 1.2E+02 0.0041 22.7 5.0 29 351-379 2-30 (33)
230 3m48_A General control protein 27.0 63 0.0022 24.2 3.5 28 351-378 2-29 (33)
231 1w9i_A Myosin II heavy chain; 27.0 30 0.001 41.9 2.9 21 80-100 169-189 (770)
232 2v26_A Myosin VI; calmodulin-b 26.9 29 0.001 42.0 2.9 21 80-100 137-157 (784)
233 3dm5_A SRP54, signal recogniti 26.9 36 0.0012 38.5 3.5 39 63-101 71-118 (443)
234 1qhx_A CPT, protein (chloramph 26.9 18 0.00063 33.8 1.0 16 84-99 4-19 (178)
235 2jlq_A Serine protease subunit 26.7 19 0.00065 39.9 1.2 25 74-99 11-35 (451)
236 3a00_A Guanylate kinase, GMP k 26.6 16 0.00053 35.2 0.4 15 86-100 4-18 (186)
237 2qen_A Walker-type ATPase; unk 26.6 25 0.00085 36.1 2.0 17 84-100 32-48 (350)
238 3trf_A Shikimate kinase, SK; a 26.6 19 0.00064 34.0 1.0 15 85-99 7-21 (185)
239 3kl4_A SRP54, signal recogniti 26.5 36 0.0012 38.3 3.4 19 83-101 97-115 (433)
240 2yhs_A FTSY, cell division pro 26.5 29 0.001 40.0 2.7 16 85-100 295-310 (503)
241 1ci6_A Transcription factor AT 26.2 92 0.0031 26.0 5.0 39 353-391 20-58 (63)
242 1uaa_A REP helicase, protein ( 25.8 19 0.00065 41.9 1.0 20 82-101 14-33 (673)
243 3nmd_A CGMP dependent protein 25.8 1.5E+02 0.0052 25.8 6.3 33 352-384 36-68 (72)
244 1i84_S Smooth muscle myosin he 25.6 31 0.0011 43.4 2.9 21 80-100 166-186 (1184)
245 4h22_A Leucine-rich repeat fli 25.6 1.7E+02 0.0059 27.0 7.0 45 353-397 41-85 (103)
246 1ypw_A Transitional endoplasmi 25.6 27 0.00094 42.0 2.3 51 50-100 199-255 (806)
247 1g8x_A Myosin II heavy chain f 25.4 32 0.0011 42.8 2.9 21 80-100 169-189 (1010)
248 3iij_A Coilin-interacting nucl 25.4 19 0.00065 34.0 0.8 15 85-99 13-27 (180)
249 3oja_B Anopheles plasmodium-re 25.3 78 0.0027 35.9 5.9 41 351-391 511-551 (597)
250 1w7j_A Myosin VA; motor protei 25.1 33 0.0011 41.6 2.9 21 80-100 153-173 (795)
251 4a2q_A RIG-I, retinoic acid in 25.0 28 0.00096 41.4 2.3 26 73-100 255-280 (797)
252 1lvg_A Guanylate kinase, GMP k 24.9 17 0.00058 35.6 0.3 16 85-100 6-21 (198)
253 2ycu_A Non muscle myosin 2C, a 24.7 34 0.0012 42.5 3.0 21 80-100 143-163 (995)
254 4db1_A Myosin-7; S1DC, cardiac 24.7 34 0.0012 41.4 2.9 21 80-100 168-188 (783)
255 1kk8_A Myosin heavy chain, str 24.6 31 0.0011 42.1 2.6 21 80-100 166-186 (837)
256 1deb_A APC protein, adenomatou 24.5 1.5E+02 0.0053 24.1 5.7 41 351-391 5-45 (54)
257 2ehv_A Hypothetical protein PH 24.3 19 0.00065 35.3 0.6 17 84-100 31-47 (251)
258 3sop_A Neuronal-specific septi 24.3 20 0.00067 37.4 0.7 19 82-100 1-19 (270)
259 2oxj_A Hybrid alpha/beta pepti 24.3 1.4E+02 0.0049 22.4 5.0 28 351-378 3-30 (34)
260 2j41_A Guanylate kinase; GMP, 24.2 20 0.00067 34.3 0.6 16 85-100 8-23 (207)
261 2oca_A DAR protein, ATP-depend 24.1 22 0.00076 39.3 1.1 25 74-100 121-145 (510)
262 3c3f_A Alpha/beta peptide with 24.1 1.5E+02 0.005 22.4 5.0 28 351-378 3-30 (34)
263 4anj_A Unconventional myosin-V 23.9 36 0.0012 42.6 2.9 21 80-100 141-161 (1052)
264 2r8r_A Sensor protein; KDPD, P 23.8 18 0.00063 37.5 0.3 19 84-102 7-25 (228)
265 2fna_A Conserved hypothetical 23.8 24 0.00083 36.2 1.2 20 79-100 28-47 (357)
266 4a4z_A Antiviral helicase SKI2 23.8 34 0.0012 42.3 2.7 24 74-99 47-70 (997)
267 2orw_A Thymidine kinase; TMTK, 23.5 16 0.00053 35.8 -0.3 18 85-102 5-22 (184)
268 1kht_A Adenylate kinase; phosp 23.4 22 0.00076 33.3 0.8 15 85-99 5-19 (192)
269 2b8t_A Thymidine kinase; deoxy 23.4 18 0.00062 37.0 0.2 20 83-102 12-31 (223)
270 4a2w_A RIG-I, retinoic acid in 23.3 30 0.001 42.3 2.1 25 74-100 256-280 (936)
271 1rj9_A FTSY, signal recognitio 23.3 23 0.00079 37.7 1.0 17 84-100 103-119 (304)
272 2bdt_A BH3686; alpha-beta prot 23.3 21 0.0007 34.0 0.6 16 85-100 4-19 (189)
273 3nbx_X ATPase RAVA; AAA+ ATPas 23.3 32 0.0011 39.4 2.2 23 76-100 36-58 (500)
274 3lnc_A Guanylate kinase, GMP k 23.2 24 0.00084 34.9 1.1 16 85-100 29-44 (231)
275 1ye8_A Protein THEP1, hypothet 23.1 20 0.00067 35.0 0.4 15 86-100 3-17 (178)
276 2gza_A Type IV secretion syste 22.7 20 0.00068 38.9 0.3 20 79-100 173-192 (361)
277 1gku_B Reverse gyrase, TOP-RG; 22.4 35 0.0012 42.4 2.4 23 74-98 64-86 (1054)
278 3kb2_A SPBC2 prophage-derived 22.3 26 0.00087 32.3 1.0 15 85-99 3-17 (173)
279 2pt7_A CAG-ALFA; ATPase, prote 22.2 21 0.00072 38.3 0.4 19 80-100 170-188 (330)
280 1kag_A SKI, shikimate kinase I 22.1 25 0.00084 32.7 0.8 15 85-99 6-20 (173)
281 1gm5_A RECG; helicase, replica 22.1 32 0.0011 41.5 2.0 24 77-100 383-406 (780)
282 3vaa_A Shikimate kinase, SK; s 22.0 26 0.00089 33.9 1.0 15 85-99 27-41 (199)
283 3cf2_A TER ATPase, transitiona 21.8 45 0.0015 40.6 3.1 49 52-100 201-255 (806)
284 2w83_C C-JUN-amino-terminal ki 21.8 1.7E+02 0.0057 25.8 5.8 43 351-393 32-74 (77)
285 2wt7_B Transcription factor MA 21.6 3E+02 0.01 24.8 7.6 27 360-386 52-78 (90)
286 2ze6_A Isopentenyl transferase 21.5 25 0.00085 35.9 0.8 15 85-99 3-17 (253)
287 1jnm_A Proto-oncogene C-JUN; B 21.5 61 0.0021 26.8 3.0 39 352-390 18-56 (62)
288 1oyw_A RECQ helicase, ATP-depe 21.3 24 0.00082 40.1 0.6 25 74-100 33-57 (523)
289 3kta_A Chromosome segregation 21.2 25 0.00084 33.2 0.6 16 85-100 28-43 (182)
290 2rhm_A Putative kinase; P-loop 21.1 26 0.00088 33.1 0.7 16 84-99 6-21 (193)
291 3m9b_A Proteasome-associated A 21.1 90 0.0031 33.0 4.9 34 351-384 63-96 (251)
292 2akf_A Coronin-1A; coiled coil 21.1 84 0.0029 23.0 3.2 25 360-384 3-27 (32)
293 2wg5_A General control protein 21.0 68 0.0023 29.4 3.5 29 357-385 8-36 (109)
294 1znw_A Guanylate kinase, GMP k 21.0 24 0.00083 34.4 0.6 16 85-100 22-37 (207)
295 3s9g_A Protein hexim1; cyclin 20.7 2.1E+02 0.007 26.4 6.4 42 351-392 39-87 (104)
296 1uf9_A TT1252 protein; P-loop, 20.6 35 0.0012 32.4 1.6 20 80-99 5-24 (203)
297 1tev_A UMP-CMP kinase; ploop, 20.6 27 0.00093 32.7 0.8 15 85-99 5-19 (196)
298 3uie_A Adenylyl-sulfate kinase 20.6 34 0.0012 33.1 1.5 19 82-100 24-42 (200)
299 1gd2_E Transcription factor PA 20.5 1.7E+02 0.0058 25.1 5.6 42 353-394 26-67 (70)
300 4e61_A Protein BIM1; EB1-like 20.4 1.6E+02 0.0056 27.3 5.9 43 351-393 6-48 (106)
301 1moz_A ARL1, ADP-ribosylation 20.3 35 0.0012 31.5 1.4 27 74-100 8-35 (183)
302 2wuj_A Septum site-determining 20.2 1.3E+02 0.0043 24.7 4.6 28 351-378 29-56 (57)
303 3efg_A Protein SLYX homolog; x 20.2 1.5E+02 0.0051 25.9 5.3 39 355-393 13-51 (78)
304 3t5d_A Septin-7; GTP-binding p 20.1 27 0.00092 35.8 0.7 21 80-100 5-25 (274)
305 2v6i_A RNA helicase; membrane, 20.1 35 0.0012 37.6 1.6 16 85-100 4-19 (431)
No 1
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=100.00 E-value=1.8e-87 Score=738.46 Aligned_cols=331 Identities=38% Similarity=0.652 Sum_probs=296.7
Q ss_pred ccCCCCEEEEEEeCCCCCCcCCCCCCcEEEeCCCceE-EEecCCCCceeEeceeeCCCCChHHHHHhhHHHHHHhhcCCC
Q 002847 5 SAIAGNIRVFCRIRPISMGENFGRLRPVIAKDSSNVL-LKLADNKSKNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYN 83 (874)
Q Consensus 5 ~~~kgnIrV~VRIRPl~~~E~~~~~~~vI~~d~~~v~-l~~~~~~~k~F~FD~VF~~~asQeeVF~~V~PlV~svLdGyN 83 (874)
.|++|+|+|+|||||++..|.......++...+...+ .....+..+.|.||+||+++++|++||+.++|+|+++++|||
T Consensus 1 ee~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~v~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~lv~~~l~G~n 80 (369)
T 3cob_A 1 EDMKGKIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFEDTKYLVQSAVDGYN 80 (369)
T ss_dssp ---CCBCEEEEEECCCCHHHHHTTCCBCEEECSSSEEEEECTTSCEEEEECSEEECTTCCHHHHHHTTTHHHHHHHTTCE
T ss_pred CCCCCCeEEEEECCCCChhhccCCCcEEEEcCCcEEEEecCCCCCceEEecCEEECCCCCcceehhhhhhhhHhhhcCCc
Confidence 4789999999999999988754333333333333222 222334568999999999999999999999999999999999
Q ss_pred eeEEEeccCCCCcceeccCCCCCCCcHHHHHHHHHHHHHhcC--CeeEEEEEEEEEecceeecccCCCCCCCCCCCCCcc
Q 002847 84 ACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAMESN--HAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCL 161 (874)
Q Consensus 84 ~TIfAYGQTGSGKTyTM~Gs~e~~GIIPRaledLF~~i~e~~--~~f~VsVS~lEIYNEkV~DLL~~~~~~~~~~~~~~L 161 (874)
+||||||||||||||||+|+++++|||||++++||+.+.... ..|.|++||+|||||+|+|||.+.... ...+
T Consensus 81 ~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~-----~~~l 155 (369)
T 3cob_A 81 VCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAK-----RLKL 155 (369)
T ss_dssp EEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEECSSCEEESSCCSSSC-----CCCC
T ss_pred eEEEEECCCCCCCeEeecCCCCCCchhHHHHHHHHHHHHhhccCceeEEEEEEEEEeCceeeecCCCcccC-----Ccce
Confidence 999999999999999999999999999999999999987543 489999999999999999999865321 2458
Q ss_pred eeeecCCCcEEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEecCCccccccceeEEEecc
Q 002847 162 SIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPERRREKNKIWLVDLG 241 (874)
Q Consensus 162 ~I~ed~~ggv~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~d~~e~~~~~SkL~LVDLA 241 (874)
.|++++.++++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|++.+........|+|+|||||
T Consensus 156 ~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVDLA 235 (369)
T 3cob_A 156 DIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLA 235 (369)
T ss_dssp EEEECTTSCEEEETCCCEEECSHHHHHHHHHHHHHHTCCCSCCTTCHHHHSEEEEEEEEEEEETTTCCEEEEEEEEEECC
T ss_pred EEEECCCCCEEccCCEEEEeCCHHHHHHHHHHHhhcceeecccCCCCCCcceEEEEEEEEEecCCCCcEEEEEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999988776667788999999999
Q ss_pred CccccccccccchhhHHHHHhhhhHHHHHHHHHHHhcCCCCccCCCCccccccccccCCCceeeEEEecCCCCCCHHHHH
Q 002847 242 GSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETI 321 (874)
Q Consensus 242 GSER~~kt~a~G~rlkEg~~INkSLsALg~VI~ALs~k~~hIPYRDSKLTrLLqDSLGGNSKT~mIa~ISPs~~~~eETL 321 (874)
||||+.++++.|.+++|+.+||+||++||+||.||+.++.||||||||||+||||+|||||+|+|||||||+..+++||+
T Consensus 236 GSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETl 315 (369)
T 3cob_A 236 GSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETH 315 (369)
T ss_dssp CSSCCCCCSSCSHHHHHHHHHTHHHHHHHHHHHHHHTTCSCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHH
T ss_pred CCCcccccCccchhhHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcCCHHHHHHHHhcCCCccEEEEEEeCCccccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccCcCCc
Q 002847 322 CSLNFATRVKSVHLGHEDS 340 (874)
Q Consensus 322 sTLrFAsRAK~Ik~~~~~~ 340 (874)
+||+||+|||+|++.+...
T Consensus 316 ~TLrfA~rak~i~~~~~~n 334 (369)
T 3cob_A 316 NSLTYASRVRSIVNDPSKN 334 (369)
T ss_dssp HHHHHHHHHHTCBCCCCCC
T ss_pred HHHHHHHHHhhcccCCccc
Confidence 9999999999999876544
No 2
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=100.00 E-value=5.5e-86 Score=717.51 Aligned_cols=325 Identities=44% Similarity=0.696 Sum_probs=280.8
Q ss_pred cCCCCEEEEEEeCCCCCCcCCC-CCCcEEEeC--CCceEEEecCCCCceeEeceeeCCCCChHHHHHhhHHHHHHhhcCC
Q 002847 6 AIAGNIRVFCRIRPISMGENFG-RLRPVIAKD--SSNVLLKLADNKSKNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGY 82 (874)
Q Consensus 6 ~~kgnIrV~VRIRPl~~~E~~~-~~~~vI~~d--~~~v~l~~~~~~~k~F~FD~VF~~~asQeeVF~~V~PlV~svLdGy 82 (874)
+++|||+|+|||||++..|... ....++.++ +..++.....+..+.|.||+||+++++|++||+.|+|+|+++++||
T Consensus 1 ~~~~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~v~~lv~~~l~G~ 80 (330)
T 2h58_A 1 GSKGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGKPVSFELDKVFSPQASQQDVFQEVQALVTSCIDGF 80 (330)
T ss_dssp ----CEEEEEEECCCCGGGCSSGGGSBCEEECSSCTTEEEEEETTEEEEEECSEEECTTCCHHHHHTTTHHHHHHHHTTC
T ss_pred CCCCCEEEEEEcCCCChhhcccCCCccEEEEeCCCCcEEEEcCCCCeeEEecCeEeCCCCCcHhHHHHHHHHHHHHhCCC
Confidence 5789999999999999888533 222344443 3333333344556889999999999999999999999999999999
Q ss_pred CeeEEEeccCCCCcceeccCCCCCCCcHHHHHHHHHHHHHhc--CCeeEEEEEEEEEecceeecccCCCCCCCCCCCCCc
Q 002847 83 NACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAMES--NHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPC 160 (874)
Q Consensus 83 N~TIfAYGQTGSGKTyTM~Gs~e~~GIIPRaledLF~~i~e~--~~~f~VsVS~lEIYNEkV~DLL~~~~~~~~~~~~~~ 160 (874)
|+||||||||||||||||+|+++++|||||++++||+.+.+. ...|.|++||+|||||+|+|||.+.+.. ...
T Consensus 81 n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~-----~l~ 155 (330)
T 2h58_A 81 NVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQE-----KLE 155 (330)
T ss_dssp CEEEEEESSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSCSSCC-----CCC
T ss_pred EEEEEeECCCCCCCcEEEecCCCCCcHHHHHHHHHHHhhhcccCCceEEEEEEEEEEECCChhhcccccccc-----cce
Confidence 999999999999999999999999999999999999999754 4579999999999999999999765321 123
Q ss_pred ceeeecCCCcEEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEecCCccccccceeEEEec
Q 002847 161 LSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPERRREKNKIWLVDL 240 (874)
Q Consensus 161 L~I~ed~~ggv~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~d~~e~~~~~SkL~LVDL 240 (874)
+++++++.++++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|++.+...+....|+|+||||
T Consensus 156 i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVDL 235 (330)
T 2h58_A 156 IRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDL 235 (330)
T ss_dssp CEECTTSSCCEECTTCCCEEECSHHHHHHHHHHHHHHTTCTTCCSCSCGGGSEEEEEEEEEEEETTTTEEEEEEEEEEEC
T ss_pred EEEeecCCCCEecCCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCcCCccEEEEEEEEEEecCCCcEEEEEEEEEeC
Confidence 55667889999999999999999999999999999999999999999999999999999998877666677899999999
Q ss_pred cCccccccccccchhhHHHHHhhhhHHHHHHHHHHHhcCCCCccCCCCccccccccccCCCceeeEEEecCCCCCCHHHH
Q 002847 241 GGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCET 320 (874)
Q Consensus 241 AGSER~~kt~a~G~rlkEg~~INkSLsALg~VI~ALs~k~~hIPYRDSKLTrLLqDSLGGNSKT~mIa~ISPs~~~~eET 320 (874)
|||||..++++.|.|++|+.+||+||++||+||.||+.++.||||||||||+||||+|||||+|+||+||||+..+++||
T Consensus 236 AGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lL~dsLgGns~t~mI~~isP~~~~~~ET 315 (330)
T 2h58_A 236 AGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSET 315 (330)
T ss_dssp CCCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTHHHHSTTCEEEEEEEECCBGGGHHHH
T ss_pred CCCCcccccCCchhhhHHHHHhhHhHHHHHHHHHHHhcCCCCCcccccHHHHHHHHHhCCCceEEEEEEeCCccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccc
Q 002847 321 ICSLNFATRVKSVHL 335 (874)
Q Consensus 321 LsTLrFAsRAK~Ik~ 335 (874)
++||+||+|||+|++
T Consensus 316 l~TL~fA~rak~i~~ 330 (330)
T 2h58_A 316 LYSLKFAERVRSVEL 330 (330)
T ss_dssp HHHHHHHHHHC----
T ss_pred HHHHHHHHHHhhCcC
Confidence 999999999999963
No 3
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=100.00 E-value=1.6e-85 Score=718.74 Aligned_cols=325 Identities=38% Similarity=0.581 Sum_probs=264.8
Q ss_pred CCCCEEEEEEeCCCCCCcCCCCCCcEEEeCCC--ceEEEec---------CCCCceeEeceeeCCCCChHHHHHh-hHHH
Q 002847 7 IAGNIRVFCRIRPISMGENFGRLRPVIAKDSS--NVLLKLA---------DNKSKNYSFDKVFHPGSSQDEVFSE-VEPV 74 (874)
Q Consensus 7 ~kgnIrV~VRIRPl~~~E~~~~~~~vI~~d~~--~v~l~~~---------~~~~k~F~FD~VF~~~asQeeVF~~-V~Pl 74 (874)
..+||+|+||+||++..|...+...++.+++. .+.+... ....+.|.||+||+++++|++||+. ++|+
T Consensus 2 ~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~pl 81 (350)
T 2vvg_A 2 SSDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTSCNYGIFQASFKPL 81 (350)
T ss_dssp --CBCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEECC--------------EEEECSEEECTTCCHHHHHHHTTHHH
T ss_pred CCCCeEEEEEeCCCChhhhccCCceEEEEcCCCCEEEEeeccccccccccCCCceEeeCCEEECCCcchhHHHHHHHHHH
Confidence 36899999999999998865555555555432 3333221 1235789999999999999999998 6999
Q ss_pred HHHhhcCCCeeEEEeccCCCCcceeccCCCCCCCcHHHHHHHHHHHHHh--cCCeeEEEEEEEEEecceeecccCCCCCC
Q 002847 75 IKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAME--SNHAFRISFSMLEIYLGSLKDLLVTQPTK 152 (874)
Q Consensus 75 V~svLdGyN~TIfAYGQTGSGKTyTM~Gs~e~~GIIPRaledLF~~i~e--~~~~f~VsVS~lEIYNEkV~DLL~~~~~~ 152 (874)
|+++|+|||+||||||||||||||||+|+++++|||||++++||+.+.. ....|.|++||+|||||+|+|||.+.
T Consensus 82 v~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~--- 158 (350)
T 2vvg_A 82 IDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKNN--- 158 (350)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTCCTTEEEEEEEEEEEEETTEEEETTTTE---
T ss_pred HHHHhCCCceeEEeecCCCCCCCEEeecCCccCchHHHHHHHHHHHHHhhccCCcEEEEEEEEEEeCCEEEEcccCC---
Confidence 9999999999999999999999999999999999999999999999874 45689999999999999999999732
Q ss_pred CCCCCCCcceeeecCCCcEEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEecCCc--ccc
Q 002847 153 ATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPE--RRR 230 (874)
Q Consensus 153 ~~~~~~~~L~I~ed~~ggv~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~d~~e--~~~ 230 (874)
..+.+++++.++++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|++.+... ...
T Consensus 159 ------~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~ 232 (350)
T 2vvg_A 159 ------TKLPLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVI 232 (350)
T ss_dssp ------EEECEEEETTTEEEETTCCCEEESSHHHHHHHHHHHHHHC----------CTTCEEEEEEEEEEEEC----CEE
T ss_pred ------cCceeeEcCCCCEEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcceEEEEEEEEEeeccCCCccE
Confidence 348899999999999999999999999999999999999999999999999999999999998765432 234
Q ss_pred ccceeEEEeccCccccccccccchhhHHHHHhhhhHHHHHHHHHHHhcCCCCccCCCCccccccccccCCCceeeEEEec
Q 002847 231 EKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVLKDSLGEDSKTLMLVHV 310 (874)
Q Consensus 231 ~~SkL~LVDLAGSER~~kt~a~G~rlkEg~~INkSLsALg~VI~ALs~k~~hIPYRDSKLTrLLqDSLGGNSKT~mIa~I 310 (874)
..|+|+|||||||||..++++.|.+++|+.+||+||++||+||.||+.++.||||||||||+||||+|||||+|+||+||
T Consensus 233 ~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~i 312 (350)
T 2vvg_A 233 RVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGATHIPYRDSKLTRLLQDSLGGNSKTLMCANI 312 (350)
T ss_dssp EEEEEEEEECCCCCC---------------CTTHHHHHHHHHHHHHHHTCSSCCGGGCHHHHHTTTTTTSSSEEEEEEEE
T ss_pred EEEEEEEEeCCCCCccccccccHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCCCccccHHHHHHHHhcCCCccEEEEEEe
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhhccccCcCCc
Q 002847 311 SPKEDDLCETICSLNFATRVKSVHLGHEDS 340 (874)
Q Consensus 311 SPs~~~~eETLsTLrFAsRAK~Ik~~~~~~ 340 (874)
||+..+++||++||+||+|||+|++.+...
T Consensus 313 sP~~~~~~ETl~TL~fA~rak~i~n~~~~n 342 (350)
T 2vvg_A 313 SPASTNYDETMSTLRYADRAKQIKNKPRIN 342 (350)
T ss_dssp CCBGGGHHHHHHHHHHHHHHTTCBCCCCCC
T ss_pred CCccccHHHHHHHHHHHHHHhhccccceec
Confidence 999999999999999999999999776543
No 4
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=3e-85 Score=717.91 Aligned_cols=322 Identities=35% Similarity=0.560 Sum_probs=257.7
Q ss_pred ccccCCCCEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEEEec---------------------CCCCceeEeceeeCCC
Q 002847 3 IVSAIAGNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLA---------------------DNKSKNYSFDKVFHPG 61 (874)
Q Consensus 3 ~v~~~kgnIrV~VRIRPl~~~E~~~~~~~vI~~d~~~v~l~~~---------------------~~~~k~F~FD~VF~~~ 61 (874)
+..|+++||+|+|||||++..|...+...++.+.+..+++..+ ..+.+.|.||+||+++
T Consensus 4 ~~~d~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~ 83 (355)
T 3lre_A 4 TEEDLCHHMKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDAVFDET 83 (355)
T ss_dssp --------CEEEEEECCCCHHHHHTTCCBSEEECSSSEEEEC------------------------CCEEEECSEEECTT
T ss_pred ChhhccCCCEEEEEeCcCChHHHhcCCceEEEecCCceEEecCCCCcceeecccccccccchhccCCCceEEeceEECCC
Confidence 3468899999999999999998766666666665554433211 1134579999999999
Q ss_pred CChHHHHHh-hHHHHHHhhcCCCeeEEEeccCCCCcceeccCCCCCCCcHHHHHHHHHHHHHh--cCCeeEEEEEEEEEe
Q 002847 62 SSQDEVFSE-VEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAME--SNHAFRISFSMLEIY 138 (874)
Q Consensus 62 asQeeVF~~-V~PlV~svLdGyN~TIfAYGQTGSGKTyTM~Gs~e~~GIIPRaledLF~~i~e--~~~~f~VsVS~lEIY 138 (874)
++|++||+. ++|+|+++|+|||+||||||||||||||||+|+++++|||||++++||+.+.+ ....|.|.|||+|||
T Consensus 84 ~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lf~~i~~~~~~~~~~v~vS~~EIY 163 (355)
T 3lre_A 84 STQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVY 163 (355)
T ss_dssp CCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEE
T ss_pred CChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccCCCCCCeeehhhhHHHHhhhhhccCceEEEEEEEEEEE
Confidence 999999998 69999999999999999999999999999999999999999999999999865 345799999999999
Q ss_pred cceeecccCCCCCCCCCCCCCcceeeecCCCcEEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEE
Q 002847 139 LGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRI 218 (874)
Q Consensus 139 NEkV~DLL~~~~~~~~~~~~~~L~I~ed~~ggv~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI 218 (874)
||+|+|||.+. ..+.+++++.++++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+||+|
T Consensus 164 nE~i~DLL~~~---------~~l~ire~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i 234 (355)
T 3lre_A 164 NEQIRDLLVNS---------GPLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQI 234 (355)
T ss_dssp TTEEEESSSCC---------CCBEEEECTTSCEEEETCCCBCCCSHHHHHHHHHHHHHTSCBC-----CBCTTCEEEEEE
T ss_pred CCEEEECcCCC---------CCceeEEcCCCCEEeeeeeEEecCCHHHHHHHHHHHHhcCCcccccCcCCCCCCcEEEEE
Confidence 99999999753 248999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCC---ccccccceeEEEeccCccccccccccchhhHHHHHhhhhHHHHHHHHHHHhcC---CCCccCCCCcccc
Q 002847 219 SITCFDAP---ERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRR---KRHVPYRNSKLTQ 292 (874)
Q Consensus 219 ~I~~~d~~---e~~~~~SkL~LVDLAGSER~~kt~a~G~rlkEg~~INkSLsALg~VI~ALs~k---~~hIPYRDSKLTr 292 (874)
+|++.+.. ......|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.||+.+ ..|||||||||||
T Consensus 235 ~v~~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~ 314 (355)
T 3lre_A 235 YLRQQDKTASINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNSKLTR 314 (355)
T ss_dssp EEEEEETTSCTTCCCCCEEEEEEECCCCCC-----------------CHHHHHHHHHHHHHC--------CCGGGSHHHH
T ss_pred EEEEecCCCCCCCCEEEEEEEEEECCCCCcCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCcccCHHHH
Confidence 99987643 23346799999999999999999999999999999999999999999999864 3599999999999
Q ss_pred ccccccCCCceeeEEEecCCCCCCHHHHHHHHHHHHHhhcc
Q 002847 293 VLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSV 333 (874)
Q Consensus 293 LLqDSLGGNSKT~mIa~ISPs~~~~eETLsTLrFAsRAK~I 333 (874)
||||+|||||+|+|||||||+..+++||++||+||+|||+|
T Consensus 315 lL~dsLgGnskt~mIa~isP~~~~~~ETl~TL~fA~rak~I 355 (355)
T 3lre_A 315 LLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355 (355)
T ss_dssp HTTTTSSTTSEEEEEEEECCBGGGHHHHHHHHHHHHHTC--
T ss_pred HHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999986
No 5
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=100.00 E-value=3.9e-85 Score=716.96 Aligned_cols=329 Identities=38% Similarity=0.624 Sum_probs=299.3
Q ss_pred cccCCCCEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEEEecCCCCceeEeceeeCCCCChHHHHHh-hHHHHHHhhcCC
Q 002847 4 VSAIAGNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADNKSKNYSFDKVFHPGSSQDEVFSE-VEPVIKSVLDGY 82 (874)
Q Consensus 4 v~~~kgnIrV~VRIRPl~~~E~~~~~~~vI~~d~~~v~l~~~~~~~k~F~FD~VF~~~asQeeVF~~-V~PlV~svLdGy 82 (874)
|.+..++|+|+|||||++..|...+..+++..++............+.|.||+||+++++|++||+. ++|+|+++|+||
T Consensus 1 ms~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~ 80 (355)
T 1goj_A 1 MSSSANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGY 80 (355)
T ss_dssp -CCSSCBCEEEEEECCCCHHHHTTTCCBCEEECSTTEEEECSTTCCEEEECSEEECTTCCHHHHHHHHTHHHHHHHTTTC
T ss_pred CCCCCCCeEEEEECCCCChHHhhcCCceEEEEcCCCeEEEccCCCccEEeeCeEECCCCccHHHHHHHHHHHHHHHhCCC
Confidence 3567899999999999999886656566777766655443444456899999999999999999997 799999999999
Q ss_pred CeeEEEeccCCCCcceeccCC----CCCCCcHHHHHHHHHHHHHhc--CCeeEEEEEEEEEecceeecccCCCCCCCCCC
Q 002847 83 NACIFAYGQTGTGKSFTMEGT----PDSPGIVPRAIEAIFKQAMES--NHAFRISFSMLEIYLGSLKDLLVTQPTKATDP 156 (874)
Q Consensus 83 N~TIfAYGQTGSGKTyTM~Gs----~e~~GIIPRaledLF~~i~e~--~~~f~VsVS~lEIYNEkV~DLL~~~~~~~~~~ 156 (874)
|+||||||||||||||||+|+ ++++|||||++++||+.+... ...|.|++||+|||||+|+|||++..
T Consensus 81 n~tifAYGqTGSGKTyTm~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~------ 154 (355)
T 1goj_A 81 NGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQN------ 154 (355)
T ss_dssp CEEEEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSTTC------
T ss_pred cceEEEECCCCCCcceEeecCCCCCcccCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEECCEEEEcccCcc------
Confidence 999999999999999999996 466899999999999998653 45899999999999999999997643
Q ss_pred CCCcceeeecCCCcEEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEecCCccccccceeE
Q 002847 157 LPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPERRREKNKIW 236 (874)
Q Consensus 157 ~~~~L~I~ed~~ggv~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~d~~e~~~~~SkL~ 236 (874)
..+.+++++.++++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|++.+........|+|+
T Consensus 155 --~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~ 232 (355)
T 1goj_A 155 --DNLPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLF 232 (355)
T ss_dssp --CSCCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEEEEEEEETTTTEEEEEEEE
T ss_pred --CCceeEEcCCCCEeecCCEEEeCCCHHHHHHHHHHHHhhcCcccccCCCCCCCceEEEEEEEEEeccCCCceeeeEEE
Confidence 247899999999999999999999999999999999999999999999999999999999999887766667789999
Q ss_pred EEeccCccccccccccchhhHHHHHhhhhHHHHHHHHHHHhcC-CCCccCCCCccccccccccCCCceeeEEEecCCCCC
Q 002847 237 LVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRR-KRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKED 315 (874)
Q Consensus 237 LVDLAGSER~~kt~a~G~rlkEg~~INkSLsALg~VI~ALs~k-~~hIPYRDSKLTrLLqDSLGGNSKT~mIa~ISPs~~ 315 (874)
|||||||||+.++++.|.+++|+.+||+||++||+||.||+.+ ..|||||||||||||||+|||||+|+||+||||+..
T Consensus 233 lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGns~t~mI~~isP~~~ 312 (355)
T 1goj_A 233 LVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSY 312 (355)
T ss_dssp EEECCCCSCCTTSSSCCCCTTTTGGGTSHHHHHHHHHHHHHHCSCSCCCGGGCHHHHHTGGGTTSSCEEEEEEEECCBGG
T ss_pred EEECCCCCcccccccchhhHHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCccCHHHHHHHHHhCCCCcEEEEEEECcccc
Confidence 9999999999999999999999999999999999999999985 589999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhccccCcCCc
Q 002847 316 DLCETICSLNFATRVKSVHLGHEDS 340 (874)
Q Consensus 316 ~~eETLsTLrFAsRAK~Ik~~~~~~ 340 (874)
+++||++||+||+|||+|++.+...
T Consensus 313 ~~~ETl~TL~fA~rak~I~n~~~vn 337 (355)
T 1goj_A 313 NDAETLSTLRFGMRAKSIKNKAKVN 337 (355)
T ss_dssp GHHHHHHHHHHHHHHHTCBCCCCCC
T ss_pred cHHHHHHHHHHHHHHhhccCCceeC
Confidence 9999999999999999999766543
No 6
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.2e-85 Score=724.17 Aligned_cols=329 Identities=33% Similarity=0.538 Sum_probs=255.3
Q ss_pred ccccCCCCEEEEEEeCCCCCCcCCCCCCcEEE-eCCCceEEEec--CCCCceeEeceeeCCCCChHHHHHh-hHHHHHHh
Q 002847 3 IVSAIAGNIRVFCRIRPISMGENFGRLRPVIA-KDSSNVLLKLA--DNKSKNYSFDKVFHPGSSQDEVFSE-VEPVIKSV 78 (874)
Q Consensus 3 ~v~~~kgnIrV~VRIRPl~~~E~~~~~~~vI~-~d~~~v~l~~~--~~~~k~F~FD~VF~~~asQeeVF~~-V~PlV~sv 78 (874)
...+.+++|+|+|||||++..|.......++. .++..+.+... ....+.|.||+||+++++|++||+. ++|+|+++
T Consensus 15 ~~~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~f~FD~Vf~~~~tQ~~Vy~~~~~plv~~~ 94 (388)
T 3bfn_A 15 YFQGPPARVRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWRNHQETLKYQFDAFYGERSTQQDIYAGSVQPILRHL 94 (388)
T ss_dssp CSSSCCCCCEEEEEECCCC-----------------------------CEEEEECSEEECTTCCHHHHHHHHTGGGHHHH
T ss_pred cccCCCCCEEEEEECCCCChhhhccCCCceEEecCCCeEEEecCCCCCCeeEEEcceEecCCCCHhHHHHHHHHHHHHHh
Confidence 45678899999999999999886443333333 34333333221 1235789999999999999999997 79999999
Q ss_pred hcCCCeeEEEeccCCCCcceeccCCCCCCCcHHHHHHHHHHHHHh-----cCCeeEEEEEEEEEecceeecccCCCCCCC
Q 002847 79 LDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAME-----SNHAFRISFSMLEIYLGSLKDLLVTQPTKA 153 (874)
Q Consensus 79 LdGyN~TIfAYGQTGSGKTyTM~Gs~e~~GIIPRaledLF~~i~e-----~~~~f~VsVS~lEIYNEkV~DLL~~~~~~~ 153 (874)
|+|||+||||||||||||||||+|+++++|||||++++||+.+.+ ....|.|++||+|||||+|+|||++..
T Consensus 95 l~G~N~tifAYGqTGSGKTyTM~G~~~~~Giipra~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~--- 171 (388)
T 3bfn_A 95 LEGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPAS--- 171 (388)
T ss_dssp TTTCCEEEEEESCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHTSTTCSEEEEEEEEEEEEETTEEEESSSCSS---
T ss_pred hcCceeeEeeecCCCCCCCeEeecCccccchhHHHHHHHHHHHHHhhccCCCceEEEEEEEEEEECCeeeehhccCC---
Confidence 999999999999999999999999999999999999999998864 235799999999999999999997643
Q ss_pred CCCCCCcceeeecCCCcEEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEecCCc-ccccc
Q 002847 154 TDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPE-RRREK 232 (874)
Q Consensus 154 ~~~~~~~L~I~ed~~ggv~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~d~~e-~~~~~ 232 (874)
..+.|++++.++++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|++.+... .....
T Consensus 172 -----~~l~ired~~~~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~ 246 (388)
T 3bfn_A 172 -----GDLVIREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFRQRE 246 (388)
T ss_dssp -----CBCCCEECTTSCEECTTCCCEECCSHHHHHHHHHHHTC-----------CGGGSEEEEEEEEEEEESSTTCCEEE
T ss_pred -----CCceEEEcCCCCEEeccceEEEeCCHHHHHHHHHHHhhccccccccCCCCCCCCeEEEEEEEEEeccCCCCceeE
Confidence 348899999999999999999999999999999999999999999999999999999999998865432 33467
Q ss_pred ceeEEEeccCccccccccccchhhHHHHHhhhhHHHHHHHHHHHhcCCCCccCCCCccccccccccCCCceeeEEEecCC
Q 002847 233 NKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSP 312 (874)
Q Consensus 233 SkL~LVDLAGSER~~kt~a~G~rlkEg~~INkSLsALg~VI~ALs~k~~hIPYRDSKLTrLLqDSLGGNSKT~mIa~ISP 312 (874)
|+|+|||||||||..++++.|.|++|+.+||+||++||+||.||+.++.||||||||||+||||+|||||+|+|||||||
T Consensus 247 skL~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSkLTrlLqdsLgGnskT~mIa~iSP 326 (388)
T 3bfn_A 247 GKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDSKLTRLLQDSLGGSAHSILIANIAP 326 (388)
T ss_dssp EEEEEEECCCTTC--------------CCCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTTTSSSTTCEEEEEEEECC
T ss_pred EEEEEEECCCCcccccccCccchhHHHhHhhhhHHHHHHHHHHHhcCCCCCcCcccHHHHHHHHhhCCCccEEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhccccCcCC
Q 002847 313 KEDDLCETICSLNFATRVKSVHLGHED 339 (874)
Q Consensus 313 s~~~~eETLsTLrFAsRAK~Ik~~~~~ 339 (874)
+..+++||++||+||+|||+|++.+..
T Consensus 327 ~~~~~~ETlsTLrfA~rak~I~n~p~~ 353 (388)
T 3bfn_A 327 ERRFYLDTVSALNFAARSKEVINRPFT 353 (388)
T ss_dssp SGGGHHHHHHHHHHHCSEEEEC-----
T ss_pred ccccHHHHHHHHHHHHHHhhCcCcCcc
Confidence 999999999999999999999876543
No 7
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=100.00 E-value=2.9e-85 Score=720.19 Aligned_cols=326 Identities=37% Similarity=0.564 Sum_probs=276.5
Q ss_pred cccCCCCEEEEEEeCCCCCCcCCCCCCcEEEeCCC--ceEEEecCCCCceeEeceeeCCCCChHHHHHh-hHHHHHHhhc
Q 002847 4 VSAIAGNIRVFCRIRPISMGENFGRLRPVIAKDSS--NVLLKLADNKSKNYSFDKVFHPGSSQDEVFSE-VEPVIKSVLD 80 (874)
Q Consensus 4 v~~~kgnIrV~VRIRPl~~~E~~~~~~~vI~~d~~--~v~l~~~~~~~k~F~FD~VF~~~asQeeVF~~-V~PlV~svLd 80 (874)
-.+.++||+|+|||||++..|...+...++...+. ...+.. ..+.|.||+||+++++|++||+. ++|+|+++|+
T Consensus 6 ~~~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~i~~---~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~ 82 (365)
T 2y65_A 6 EIPAEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISI---AGKVYLFDKVFKPNASQEKVYNEAAKSIVTDVLA 82 (365)
T ss_dssp --CCEEECEEEEEECCCCHHHHHTTCCBCEECCSSSTTCEEEE---TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHT
T ss_pred cCCCCCCeEEEEEcCcCChhHhccCCceEEEeCCCCCCcEEEE---CCEEEeCceEecCCCCHHHHHHHhhhhHHHHHhC
Confidence 34567899999999999998865554455555442 222222 24789999999999999999998 5999999999
Q ss_pred CCCeeEEEeccCCCCcceeccCCC---CCCCcHHHHHHHHHHHHHh--cCCeeEEEEEEEEEecceeecccCCCCCCCCC
Q 002847 81 GYNACIFAYGQTGTGKSFTMEGTP---DSPGIVPRAIEAIFKQAME--SNHAFRISFSMLEIYLGSLKDLLVTQPTKATD 155 (874)
Q Consensus 81 GyN~TIfAYGQTGSGKTyTM~Gs~---e~~GIIPRaledLF~~i~e--~~~~f~VsVS~lEIYNEkV~DLL~~~~~~~~~ 155 (874)
|||+||||||||||||||||+|.. .++|||||++++||+.+.. .+..|.|++||+|||||+|+|||++..
T Consensus 83 G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~----- 157 (365)
T 2y65_A 83 GYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSK----- 157 (365)
T ss_dssp TCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEEEETTEEEETTCTTC-----
T ss_pred CCceEEEeecCCCCCCceEEecCCCCcccCChHHHHHHHHHHHHHhccCCceEEEEEEEEEEECCeeeecccCCc-----
Confidence 999999999999999999999975 4569999999999999865 356899999999999999999997542
Q ss_pred CCCCcceeeecCCCcEEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEecCCcccccccee
Q 002847 156 PLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPERRREKNKI 235 (874)
Q Consensus 156 ~~~~~L~I~ed~~ggv~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~d~~e~~~~~SkL 235 (874)
..+.+++++.++++|.|++++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|++.+........|+|
T Consensus 158 ---~~l~i~e~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL 234 (365)
T 2y65_A 158 ---VNLSVHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKKLSGKL 234 (365)
T ss_dssp ---CSBCEEECSSSCEEETTCCCEEECSHHHHHHHHHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEETTTCCEEEEEE
T ss_pred ---CCceEEECCCCCEEecCCEEEecCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEecCCCCEeEEEE
Confidence 34889999999999999999999999999999999999999999999999999999999999988776666778999
Q ss_pred EEEeccCccccccccccchhhHHHHHhhhhHHHHHHHHHHHhcC-CCCccCCCCccccccccccCCCceeeEEEecCCCC
Q 002847 236 WLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRR-KRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKE 314 (874)
Q Consensus 236 ~LVDLAGSER~~kt~a~G~rlkEg~~INkSLsALg~VI~ALs~k-~~hIPYRDSKLTrLLqDSLGGNSKT~mIa~ISPs~ 314 (874)
+|||||||||+.++++.|.+++|+.+||+||++||+||.||+.+ +.||||||||||+||||+|||||+|+||+||||+.
T Consensus 235 ~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~ 314 (365)
T 2y65_A 235 YLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICCSPAS 314 (365)
T ss_dssp EEEECCCCCC----------------CCHHHHHHHHHHHHHHHCCCSCCCGGGCHHHHHTGGGTTSSSEEEEEEEECCBG
T ss_pred EEEECCCCCcchhcCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCHHHHHHHhhcCCCccEEEEEEecCcc
Confidence 99999999999999999999999999999999999999999986 58999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhccccCcCCc
Q 002847 315 DDLCETICSLNFATRVKSVHLGHEDS 340 (874)
Q Consensus 315 ~~~eETLsTLrFAsRAK~Ik~~~~~~ 340 (874)
.+++||++||+||+|||+|++.+...
T Consensus 315 ~~~~ETl~TL~fA~rak~I~n~~~~n 340 (365)
T 2y65_A 315 FNESETKSTLDFGRRAKTVKNVVCVN 340 (365)
T ss_dssp GGHHHHHHHHHHHHHHTTCEEECCCE
T ss_pred CCHHHHHHHHHHHHHHhcccCcceeC
Confidence 99999999999999999999765443
No 8
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=100.00 E-value=2.2e-85 Score=711.43 Aligned_cols=317 Identities=38% Similarity=0.582 Sum_probs=288.1
Q ss_pred ccCCCCEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEEEecCCCCceeEeceeeCCCCChHHHHHh-hHHHHHHhhcCCC
Q 002847 5 SAIAGNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADNKSKNYSFDKVFHPGSSQDEVFSE-VEPVIKSVLDGYN 83 (874)
Q Consensus 5 ~~~kgnIrV~VRIRPl~~~E~~~~~~~vI~~d~~~v~l~~~~~~~k~F~FD~VF~~~asQeeVF~~-V~PlV~svLdGyN 83 (874)
-..++||+|+|||||++..|...+...++.+.+...+.. ..+.|.||+||+++++|++||+. ++|+|+++++|||
T Consensus 3 ~~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~----~~~~f~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~n 78 (325)
T 1bg2_A 3 DLAECNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVI----ASKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYN 78 (325)
T ss_dssp CCSSCEEEEEEEECCCCHHHHHHTCCBCCEEETTTEEEE----TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCC
T ss_pred CCCCCCEEEEEEcCCCChhHhccCCeeEEEECCCCeEEE----CCEEEECCeEeCCCCCHHHHHHHHhhhhHHHHhCCCe
Confidence 356899999999999999885433333444444333322 25789999999999999999998 5999999999999
Q ss_pred eeEEEeccCCCCcceeccCCCCC---CCcHHHHHHHHHHHHHh--cCCeeEEEEEEEEEecceeecccCCCCCCCCCCCC
Q 002847 84 ACIFAYGQTGTGKSFTMEGTPDS---PGIVPRAIEAIFKQAME--SNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLP 158 (874)
Q Consensus 84 ~TIfAYGQTGSGKTyTM~Gs~e~---~GIIPRaledLF~~i~e--~~~~f~VsVS~lEIYNEkV~DLL~~~~~~~~~~~~ 158 (874)
+||||||||||||||||+|+..+ +|||||++++||+.+.. .+..|.|++||+|||||+|+|||++..
T Consensus 79 ~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~-------- 150 (325)
T 1bg2_A 79 GTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSK-------- 150 (325)
T ss_dssp EEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHHCSSEEEEEEEEEEEEETTEEEESSCTTC--------
T ss_pred EEEEEECCCCCCCceEecccCCCcccCccHHHHHHHHHHHHHhccCCceEEEEEEEEEEecCeeeecccCCC--------
Confidence 99999999999999999997544 59999999999999864 456899999999999999999997542
Q ss_pred CcceeeecCCCcEEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEecCCccccccceeEEE
Q 002847 159 PCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPERRREKNKIWLV 238 (874)
Q Consensus 159 ~~L~I~ed~~ggv~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~d~~e~~~~~SkL~LV 238 (874)
..+.+++++.++++|.|++++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|++.+........|+|+||
T Consensus 151 ~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skl~lV 230 (325)
T 1bg2_A 151 TNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLV 230 (325)
T ss_dssp CSBCEEECTTSCEEETTCCCEEECSHHHHHHHHHHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEETTTCCEEEEEEEEE
T ss_pred CCceEEECCCCCEEecCceEEeCCCHHHHHHHHHHHHhhCceeecCCCCCCCCCeEEEEEEEEEEecCCCcEEEEEEEEE
Confidence 34889999999999999999999999999999999999999999999999999999999999988776666778999999
Q ss_pred eccCccccccccccchhhHHHHHhhhhHHHHHHHHHHHhcCCCCccCCCCccccccccccCCCceeeEEEecCCCCCCHH
Q 002847 239 DLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLC 318 (874)
Q Consensus 239 DLAGSER~~kt~a~G~rlkEg~~INkSLsALg~VI~ALs~k~~hIPYRDSKLTrLLqDSLGGNSKT~mIa~ISPs~~~~e 318 (874)
|||||||..++++.|.+++|+.+||+||++||+||.||+.++.||||||||||+||||+|||||+|+||+||||+..+++
T Consensus 231 DLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGns~t~mia~vsP~~~~~~ 310 (325)
T 1bg2_A 231 DLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNES 310 (325)
T ss_dssp ECCCSCCCCCCSSSCTTSCCCCCCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHGGGTSSSSCEEEEEEEECCBGGGHH
T ss_pred ECCCCCcccccCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHhCCCCcEEEEEEECCccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcc
Q 002847 319 ETICSLNFATRVKSV 333 (874)
Q Consensus 319 ETLsTLrFAsRAK~I 333 (874)
||++||+||+|||+|
T Consensus 311 ETl~TL~fa~rak~I 325 (325)
T 1bg2_A 311 ETKSTLLFGQRAKTI 325 (325)
T ss_dssp HHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHhccC
Confidence 999999999999987
No 9
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=100.00 E-value=3.3e-84 Score=708.21 Aligned_cols=330 Identities=38% Similarity=0.609 Sum_probs=261.5
Q ss_pred cCCCCEEEEEEeCCCCCCcCCCCCCcEEEe-CC--Cc--eEEEecCC--CCceeEeceeeCCCCChHHHHHhhHHHHHHh
Q 002847 6 AIAGNIRVFCRIRPISMGENFGRLRPVIAK-DS--SN--VLLKLADN--KSKNYSFDKVFHPGSSQDEVFSEVEPVIKSV 78 (874)
Q Consensus 6 ~~kgnIrV~VRIRPl~~~E~~~~~~~vI~~-d~--~~--v~l~~~~~--~~k~F~FD~VF~~~asQeeVF~~V~PlV~sv 78 (874)
+++|||||||||||+...|.......++.. ++ .. +.+....+ ..+.|.||+||+++++|++||++|.|+|+++
T Consensus 2 ~lkgnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~vf~~v~~lv~~~ 81 (349)
T 3t0q_A 2 ALRGNIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMIFEPSHTNKEIFEEIRQLVQSS 81 (349)
T ss_dssp ---CEEEEEEEECCCCTTSCCCCTTEEECCCBC--CBEEEEEEECC--CEEEEEEESEEECTTCCHHHHHHHHHHHHHGG
T ss_pred CCCCCcEEEEEeCCCCccccccCceEEEeeccCCCCceEEEEcCCCCcccceeeecCEEECCCccHHHHHHHHHHHHHHH
Confidence 689999999999999998865443333321 11 11 22222222 2468999999999999999999999999999
Q ss_pred hcCCCeeEEEeccCCCCcceeccCCCCCCCcHHHHHHHHHHHHHh---cCCeeEEEEEEEEEecceeecccCCCCCCCCC
Q 002847 79 LDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAME---SNHAFRISFSMLEIYLGSLKDLLVTQPTKATD 155 (874)
Q Consensus 79 LdGyN~TIfAYGQTGSGKTyTM~Gs~e~~GIIPRaledLF~~i~e---~~~~f~VsVS~lEIYNEkV~DLL~~~~~~~~~ 155 (874)
|+|||+||||||||||||||||+|+ ++|||||++++||+.+.. .+..|.|++||+|||||+|+|||.+.......
T Consensus 82 l~G~n~tifAYGqTGSGKTyTm~g~--~~Giipr~~~~lF~~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~ 159 (349)
T 3t0q_A 82 LDGYNVCIFAYGQTGSGKTYTMLNA--GDGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNI 159 (349)
T ss_dssp GTTCEEEEEEECSTTSSHHHHHHST--TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTC--------
T ss_pred HCCcceeEEEeCCCCCCCceEeCCC--CCchhhHHHHHHHHHHHHhhhcCceeEEEEEEEEEEcchhhcccccccccccc
Confidence 9999999999999999999999996 469999999999998754 45689999999999999999999865421110
Q ss_pred ---CCCCcceeeecC-CCcEEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEecCCccccc
Q 002847 156 ---PLPPCLSIHTEP-KGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPERRRE 231 (874)
Q Consensus 156 ---~~~~~L~I~ed~-~ggv~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~d~~e~~~~ 231 (874)
.....+.+++++ .++++|.||+++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|++.+...+...
T Consensus 160 ~~~~~~~~~~i~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~ 239 (349)
T 3t0q_A 160 DEILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHTGETS 239 (349)
T ss_dssp -------CCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHC------------CTGGGSEEEEEEEEEEEETTTCCEE
T ss_pred ccccccccceeEEecCCCCEEEeCCEEEEeCCHHHHHHHHHHHHHhCcccccccccccCCcceEEEEEEEEEecCCCCee
Confidence 112346677665 5679999999999999999999999999999999999999999999999999998877766777
Q ss_pred cceeEEEeccCccccccccccchhhHHHHHhhhhHHHHHHHHHHHhcCC---CCccCCCCccccccccccCCCceeeEEE
Q 002847 232 KNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRK---RHVPYRNSKLTQVLKDSLGEDSKTLMLV 308 (874)
Q Consensus 232 ~SkL~LVDLAGSER~~kt~a~G~rlkEg~~INkSLsALg~VI~ALs~k~---~hIPYRDSKLTrLLqDSLGGNSKT~mIa 308 (874)
.|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.||+.++ .||||||||||+||||+|||||+|+|||
T Consensus 240 ~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt~mi~ 319 (349)
T 3t0q_A 240 QGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLTYLLQYSLVGDSKTLMFV 319 (349)
T ss_dssp EEEEEEEECCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCCCGGGSHHHHHHGGGSSTTCEEEEEE
T ss_pred EEEEEEEeCCCCCccccccCccccchhHHhhhHhHHHHHHHHHHHhcccCCCCcCCCcCCHHHHHHHHhcCCCceEEEEE
Confidence 8999999999999999999999999999999999999999999998755 4999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhhccccCc
Q 002847 309 HVSPKEDDLCETICSLNFATRVKSVHLGH 337 (874)
Q Consensus 309 ~ISPs~~~~eETLsTLrFAsRAK~Ik~~~ 337 (874)
||||+..+++||++||+||+|+++|++++
T Consensus 320 ~vsP~~~~~~ETl~TL~fA~rv~~ik~~~ 348 (349)
T 3t0q_A 320 NIPPDPNHISETLNSLRFASKVNSTKIAK 348 (349)
T ss_dssp EECCCGGGHHHHHHHHHHHHHHHC-----
T ss_pred EeCCchhhHHHHHHHHHHHHHhhhcccCC
Confidence 99999999999999999999999998753
No 10
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.8e-84 Score=716.32 Aligned_cols=329 Identities=40% Similarity=0.616 Sum_probs=252.2
Q ss_pred cccccCCCCEEEEEEeCCCCCCcCCCCCCcE-EE-------eCCCceEEEe------------cCCCCceeEeceeeCCC
Q 002847 2 LIVSAIAGNIRVFCRIRPISMGENFGRLRPV-IA-------KDSSNVLLKL------------ADNKSKNYSFDKVFHPG 61 (874)
Q Consensus 2 ~~v~~~kgnIrV~VRIRPl~~~E~~~~~~~v-I~-------~d~~~v~l~~------------~~~~~k~F~FD~VF~~~ 61 (874)
+.+.+++|||+|+|||||++..|.......+ +. .+...+.+.. .....+.|.||+||+++
T Consensus 15 n~~~~~~~~irV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~~~ 94 (376)
T 2rep_A 15 VPRGSLKGNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDFSFDRVFPPG 94 (376)
T ss_dssp --------CEEEEEEECCCCTTSCCCCGGGSBCCC------CCCCEEECCC-----------------CEEECSEEECTT
T ss_pred chhhccCCCeEEEEEcCCCChhhcccCCceEEEccCcccccCCCcEEEEecCCccccccccccCCCCceeeeecEEcCCc
Confidence 5788999999999999999998865432111 11 1122222211 01234689999999999
Q ss_pred CChHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCcceeccCCCC----CCCcHHHHHHHHHHHHHh---cCCeeEEEEEE
Q 002847 62 SSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPD----SPGIVPRAIEAIFKQAME---SNHAFRISFSM 134 (874)
Q Consensus 62 asQeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM~Gs~e----~~GIIPRaledLF~~i~e---~~~~f~VsVS~ 134 (874)
++|++||+.|.|+|+++|+|||+||||||||||||||||+|++. ++|||||++++||+.+.+ .+..|.|++||
T Consensus 95 ~~Q~~Vy~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~ 174 (376)
T 2rep_A 95 SGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLEGLIPRALRHLFSVAQELSGQGWTYSFVASY 174 (376)
T ss_dssp CCHHHHHHHHHHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSCCGGGBCHHHHHHHHHHHHHHHGGGGTEEEEEEEEE
T ss_pred ccchhhhhhHHHHHHHhcCCCceEEEEeCCCCCCCceEeecCCCCCcccCCcHHHHHHHHHHHHHHhhcCCeEEEEEEEE
Confidence 99999999999999999999999999999999999999999753 689999999999998864 35689999999
Q ss_pred EEEecceeecccCCCCCCCCCCCCCcceeeec--CCCcEEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCc
Q 002847 135 LEIYLGSLKDLLVTQPTKATDPLPPCLSIHTE--PKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRS 212 (874)
Q Consensus 135 lEIYNEkV~DLL~~~~~~~~~~~~~~L~I~ed--~~ggv~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRS 212 (874)
+|||||+|+|||++.... .....+.++++ +.++++|.|++++.|.+++|++.+|..|.++|++++|.+|..||||
T Consensus 175 ~EIYnE~i~DLL~~~~~~---~~~~~l~ir~~~~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRS 251 (376)
T 2rep_A 175 VEIYNETVRDLLATGTRK---GQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRS 251 (376)
T ss_dssp EEEETTEEEETTCCC-----------CCEEEC---CCCEEETTCCCEEECSHHHHHHHHHHHHHHHHHCC-----CGGGS
T ss_pred EEEECCEeeEcccccccc---ccCCCceEEeccCCCCCEEECCcEEEEeCCHHHHHHHHHHHHhhcccccccCCCCCCCc
Confidence 999999999999875321 11234778877 6789999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEEEecCCccccccceeEEEeccCccccccccccc----hhhHHHHHhhhhHHHHHHHHHHHhcCCCCccCCCC
Q 002847 213 HCMIRISITCFDAPERRREKNKIWLVDLGGSERVLKTKARG----RRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNS 288 (874)
Q Consensus 213 HaIftI~I~~~d~~e~~~~~SkL~LVDLAGSER~~kt~a~G----~rlkEg~~INkSLsALg~VI~ALs~k~~hIPYRDS 288 (874)
|+||+|+|++.+........++|+|||||||||+.++++.| .|++|+.+||+||++||+||.||++++.|||||||
T Consensus 252 H~Ifti~v~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~~~~~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdS 331 (376)
T 2rep_A 252 HSVFQLQISGEHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSNKESHVPYRNS 331 (376)
T ss_dssp EEEEEEEEEEEESSSCCEEEEEEEEEECCCCC------------------------CHHHHHHHHHHHHTTCSCCCGGGS
T ss_pred eEEEEEEEEEEecCCCcEEEeEEEEEECCCCcccccccccCccccchhhHHhHhhHHHHHHHHHHHHHhcCCCccCCcCC
Confidence 99999999988776666678999999999999999999999 99999999999999999999999999999999999
Q ss_pred ccccccccccCCCceeeEEEecCCCCCCHHHHHHHHHHHHHhhcc
Q 002847 289 KLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSV 333 (874)
Q Consensus 289 KLTrLLqDSLGGNSKT~mIa~ISPs~~~~eETLsTLrFAsRAK~I 333 (874)
||||||||+|||||+|+|||||||+..+++||++||+||+|++++
T Consensus 332 kLT~LLqdsLgGnskT~mIa~isP~~~~~~ETlsTLrfA~Rv~~~ 376 (376)
T 2rep_A 332 KLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQC 376 (376)
T ss_dssp HHHHHTGGGTSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999864
No 11
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=100.00 E-value=2.6e-84 Score=709.02 Aligned_cols=325 Identities=34% Similarity=0.530 Sum_probs=280.4
Q ss_pred CCCCEEEEEEeCCCCCCcCCCCCCcEEEe-CCCceEEEecCCCCceeEeceeeCCCCChHHHHHh-hHHHHHHhhcCCCe
Q 002847 7 IAGNIRVFCRIRPISMGENFGRLRPVIAK-DSSNVLLKLADNKSKNYSFDKVFHPGSSQDEVFSE-VEPVIKSVLDGYNA 84 (874)
Q Consensus 7 ~kgnIrV~VRIRPl~~~E~~~~~~~vI~~-d~~~v~l~~~~~~~k~F~FD~VF~~~asQeeVF~~-V~PlV~svLdGyN~ 84 (874)
..|+|+|+|||||++..|...+...++.+ .+...+.. . ...+.|.||+||+++++|++||+. ++|+|+++|+|||+
T Consensus 2 e~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~-~-~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G~n~ 79 (349)
T 1t5c_A 2 EEGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQ-V-DGSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNG 79 (349)
T ss_dssp -CCCEEEEEEECCCSCSSCTTTTCCCCCEEEETTEEEE-T-TSSCEEECSCEECTTSCHHHHHHHTTHHHHHHHHTTCCE
T ss_pred CCCCEEEEEECCCCChhhhccCCCcEEEEeCCCCeEEE-C-CCCeEEECCEEECCCCCHHHHHHHHHHHHHHHHHcCCcc
Confidence 57999999999999998864433322222 22222222 2 345799999999999999999998 58999999999999
Q ss_pred eEEEeccCCCCcceeccCCCCCCCcHHHHHHHHHHHHHh-cCCeeEEEEEEEEEecceeecccCCCCCCCCCCCCCccee
Q 002847 85 CIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAME-SNHAFRISFSMLEIYLGSLKDLLVTQPTKATDPLPPCLSI 163 (874)
Q Consensus 85 TIfAYGQTGSGKTyTM~Gs~e~~GIIPRaledLF~~i~e-~~~~f~VsVS~lEIYNEkV~DLL~~~~~~~~~~~~~~L~I 163 (874)
||||||||||||||||+|+++++|||||++++||+.+.. ....|.|+|||+|||||+|+|||++... ...+.|
T Consensus 80 tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~------~~~l~i 153 (349)
T 1t5c_A 80 TIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTQK------MKPLII 153 (349)
T ss_dssp EEEEEESTTSSHHHHHTBCSSSBCHHHHHHHHHHHHGGGCTTEEEEEEEEEEEEETTEEEESSSSSCT------TCCEEE
T ss_pred ceeeecCCCCCCCeEEecCCCCCchHHHHHHHHHHHHHhCcCCcEEEEEEEEEEeCCEEEEccCCCCC------CCCceE
Confidence 999999999999999999999999999999999999865 3568999999999999999999976532 245899
Q ss_pred eecCCCcEEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEecCCc-----cccccceeEEE
Q 002847 164 HTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPE-----RRREKNKIWLV 238 (874)
Q Consensus 164 ~ed~~ggv~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~d~~e-----~~~~~SkL~LV 238 (874)
++++.++++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|++.+... .....|+|+||
T Consensus 154 ~ed~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~~skL~lV 233 (349)
T 1t5c_A 154 REDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLV 233 (349)
T ss_dssp EETTTTEEEETTCCCEECSSHHHHHHHHHHHHHTTSSSSSSSSCTTTTCEEEEEEEEEEEECC-------CEEEEEEEEE
T ss_pred EECCCCCEEecCCEEEEeCCHHHHHHHHHHhhcccccccccCCCCCCCceEEEEEEEEEeccCCCcCcCccEEEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999998765432 23467999999
Q ss_pred eccCccccccccccchhhHHHHHhhhhHHHHHHHHHHHhcCC--CCccCCCCccccccccccCCCceeeEEEecCCCCCC
Q 002847 239 DLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRK--RHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDD 316 (874)
Q Consensus 239 DLAGSER~~kt~a~G~rlkEg~~INkSLsALg~VI~ALs~k~--~hIPYRDSKLTrLLqDSLGGNSKT~mIa~ISPs~~~ 316 (874)
|||||||+.++++.|.|++|+.+||+||++||+||.||+.++ .|||||||||||||||+|||||+|+|||||||+ +
T Consensus 234 DLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~--~ 311 (349)
T 1t5c_A 234 DLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITPV--S 311 (349)
T ss_dssp ECCCGGGTC-------CCCSSSCCCHHHHHHHHHHHHHHHTCCTTSSCGGGSHHHHHTGGGTTSSSEEEEEEEECTT--C
T ss_pred ECCCCccccccCCccccchhhhHHhHHHHHHHHHHHHHhccCCCCCCcccccHHHHHHHHhcCCCceEEEEEEeCCC--C
Confidence 999999999999999999999999999999999999999865 699999999999999999999999999999997 5
Q ss_pred HHHHHHHHHHHHHhhccccCcCCch
Q 002847 317 LCETICSLNFATRVKSVHLGHEDSN 341 (874)
Q Consensus 317 ~eETLsTLrFAsRAK~Ik~~~~~~~ 341 (874)
++||++||+||+|||+|++.+..+.
T Consensus 312 ~~ETlsTL~fA~rak~I~n~~~vn~ 336 (349)
T 1t5c_A 312 FDETLTALQFASTAKYMKNTPYVNE 336 (349)
T ss_dssp SHHHHHHHHHHHHHTTCCCCCCCCE
T ss_pred HHHHHHHHHHHHHHhhcccCceecc
Confidence 8999999999999999998765443
No 12
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=100.00 E-value=6e-85 Score=716.39 Aligned_cols=329 Identities=37% Similarity=0.578 Sum_probs=273.8
Q ss_pred cCCCCEEEEEEeCCCCCCcCCCCCCcEEEeCCC--ceEEEec----CCCCceeEeceeeCCCCChHHHHHh-hHHHHHHh
Q 002847 6 AIAGNIRVFCRIRPISMGENFGRLRPVIAKDSS--NVLLKLA----DNKSKNYSFDKVFHPGSSQDEVFSE-VEPVIKSV 78 (874)
Q Consensus 6 ~~kgnIrV~VRIRPl~~~E~~~~~~~vI~~d~~--~v~l~~~----~~~~k~F~FD~VF~~~asQeeVF~~-V~PlV~sv 78 (874)
+.++||+|+|||||++..|.......++..++. .+.+... ....+.|.||+||+++++|++||+. ++|+|+++
T Consensus 5 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~ 84 (359)
T 1x88_A 5 EKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDEV 84 (359)
T ss_dssp ----CCEEEEEECCCCHHHHHTTCCCCEEEETTTTEEEEEEEEETTEEEEEEEECSEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCChhhhhcCCceEEEEcCCCcEEEEeCCCccCCcCceEEeceEEEeccCchhHHHHHHHHHhHHHH
Confidence 467999999999999988865555555555443 2333221 1235789999999999999999998 58999999
Q ss_pred hcCCCeeEEEeccCCCCcceeccCCCC-----------CCCcHHHHHHHHHHHHHhcCCeeEEEEEEEEEecceeecccC
Q 002847 79 LDGYNACIFAYGQTGTGKSFTMEGTPD-----------SPGIVPRAIEAIFKQAMESNHAFRISFSMLEIYLGSLKDLLV 147 (874)
Q Consensus 79 LdGyN~TIfAYGQTGSGKTyTM~Gs~e-----------~~GIIPRaledLF~~i~e~~~~f~VsVS~lEIYNEkV~DLL~ 147 (874)
|+|||+||||||||||||||||+|++. .+|||||++++||+.+.+....|.|+|||+|||||+|+|||+
T Consensus 85 l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~v~vS~~EIYnE~i~DLL~ 164 (359)
T 1x88_A 85 IMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLN 164 (359)
T ss_dssp HTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHHHHTSSSSEEEEEEEEEEEEETTEEEETTC
T ss_pred hCCCceEEEEeCCCCCCCceEEeccCCccccccccccccCCchHHHHHHHHHHHhccCceEEEEEEEEEEeCceeeehhc
Confidence 999999999999999999999999764 369999999999999988788999999999999999999997
Q ss_pred CCCCCCCCCCCCcceeeecCC--CcEEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEecC
Q 002847 148 TQPTKATDPLPPCLSIHTEPK--GGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDA 225 (874)
Q Consensus 148 ~~~~~~~~~~~~~L~I~ed~~--ggv~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~d~ 225 (874)
+.... ...+.+++++. ++++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|++.+.
T Consensus 165 ~~~~~-----~~~l~i~~~~~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~ 239 (359)
T 1x88_A 165 PSSDV-----SERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKET 239 (359)
T ss_dssp TTSCT-----TCCBEEEEETTEEEEEEEETCCCEEECSGGGHHHHHHHHHHHHHHHHHHSTTHHHHCEEEEEEEEEEEEE
T ss_pred ccccc-----cccceEEeccCCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCccEEEEEEEEEecc
Confidence 65421 24588998874 789999999999999999999999999999999999999999999999999986532
Q ss_pred ---CccccccceeEEEeccCccccccccccchhhHHHHHhhhhHHHHHHHHHHHhcCCCCccCCCCccccccccccCCCc
Q 002847 226 ---PERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVLKDSLGEDS 302 (874)
Q Consensus 226 ---~e~~~~~SkL~LVDLAGSER~~kt~a~G~rlkEg~~INkSLsALg~VI~ALs~k~~hIPYRDSKLTrLLqDSLGGNS 302 (874)
.......|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.||+.+..||||||||||+||||+|||||
T Consensus 240 ~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGns 319 (359)
T 1x88_A 240 TIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRT 319 (359)
T ss_dssp CTTSCEEEEEEEEEEEECCCCCC---------------CCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTGGGSSSSS
T ss_pred cCCCCceEEEEEEEEEcCCCCCcccccCCcccchHHHhhhhHHHHHHHHHHHHHhcCCCCCccccchHHHHHHHHhCCCC
Confidence 12234579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEecCCCCCCHHHHHHHHHHHHHhhccccCcCC
Q 002847 303 KTLMLVHVSPKEDDLCETICSLNFATRVKSVHLGHED 339 (874)
Q Consensus 303 KT~mIa~ISPs~~~~eETLsTLrFAsRAK~Ik~~~~~ 339 (874)
+|+|||||||+..+++||++||+||+|||+|++.+..
T Consensus 320 kt~mIa~vsP~~~~~~ETl~TLrfA~rak~I~n~p~v 356 (359)
T 1x88_A 320 RTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEV 356 (359)
T ss_dssp EEEEEEEECCCGGGHHHHHHHHHHHHHHTTCCCCCC-
T ss_pred eEEEEEEECCCcccHHHHHHHHHHHHHHhhccCccee
Confidence 9999999999999999999999999999999976643
No 13
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=100.00 E-value=8.9e-84 Score=723.63 Aligned_cols=332 Identities=37% Similarity=0.588 Sum_probs=274.6
Q ss_pred cccCCCCEEEEEEeCCCCCCcCCCCCCcEEEeCCCce--EEEecC---------------CCCceeEeceeeCC------
Q 002847 4 VSAIAGNIRVFCRIRPISMGENFGRLRPVIAKDSSNV--LLKLAD---------------NKSKNYSFDKVFHP------ 60 (874)
Q Consensus 4 v~~~kgnIrV~VRIRPl~~~E~~~~~~~vI~~d~~~v--~l~~~~---------------~~~k~F~FD~VF~~------ 60 (874)
..+.++||+|+|||||++..|...+..+++.++.... .+.... ...+.|.||+||++
T Consensus 33 ~~~~~~~vrV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~F~FD~vF~~~~~~~~ 112 (443)
T 2owm_A 33 SKDPGANVRVVVRVRAFLPRELERNAECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSHNTEDE 112 (443)
T ss_dssp -CCCCEECEEEEEEECCCHHHHHTTCCCCEEECSSSCEEEECCCC---------------CCCEEEECSEEEEESCTTST
T ss_pred cCCCCCCeEEEEEeCCCChHHhhcCCceEEEEcCCCccEEEecCCCcccccccccccccccCCceEecCeEeCCCCcCCc
Confidence 4578899999999999999886555556666665432 221111 13578999999976
Q ss_pred -CCChHHHHHh-hHHHHHHhhcCCCeeEEEeccCCCCcceeccCCCCCCCcHHHHHHHHHHHHHhc-----CCeeEEEEE
Q 002847 61 -GSSQDEVFSE-VEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAMES-----NHAFRISFS 133 (874)
Q Consensus 61 -~asQeeVF~~-V~PlV~svLdGyN~TIfAYGQTGSGKTyTM~Gs~e~~GIIPRaledLF~~i~e~-----~~~f~VsVS 133 (874)
.++|++||+. ++|+|+++|+|||+||||||||||||||||+|+++++|||||++++||+.+... +..|.|+||
T Consensus 113 ~~asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIipr~~~~lF~~i~~~~~~~~~~~~~V~vS 192 (443)
T 2owm_A 113 HYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVS 192 (443)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCTTSCCHHHHHHHHHHHHHHHTTTTSTTCEEEEEEE
T ss_pred cCCCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCCCCCchHHHHHHHHHHHHHhhhcccCCceEEEEEE
Confidence 4899999998 589999999999999999999999999999999999999999999999998643 568999999
Q ss_pred EEEEecceeecccCCCCCCCCCCCCCcceeeecCCCcEEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCce
Q 002847 134 MLEIYLGSLKDLLVTQPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSH 213 (874)
Q Consensus 134 ~lEIYNEkV~DLL~~~~~~~~~~~~~~L~I~ed~~ggv~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSH 213 (874)
|+|||||+|+|||++.... ..+..+.|++++.++++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||
T Consensus 193 ~lEIYnE~i~DLL~~~~~~---~~~~~l~ire~~~~g~~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH 269 (443)
T 2owm_A 193 YFEVYNEHVRDLLAPVVPN---KPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSH 269 (443)
T ss_dssp EEEEETTEEEETTSCCCSS---CCCCCCEEEEETTTEEEEETCCCEECCSHHHHHHHHHHHHTTSCBCSSSSSCBCTTEE
T ss_pred EEEEECCEeeEccCccccC---CcccccceeECCCCCEeccCCEEEEcCCHHHHHHHHHHHHhhCCcccCcCCCccCCCe
Confidence 9999999999999874321 1234689999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEEecC----CccccccceeEEEeccCccccccccccchhhHHHHHhhhhHHHHHHHHHHHhcCC---------
Q 002847 214 CMIRISITCFDA----PERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRK--------- 280 (874)
Q Consensus 214 aIftI~I~~~d~----~e~~~~~SkL~LVDLAGSER~~kt~a~G~rlkEg~~INkSLsALg~VI~ALs~k~--------- 280 (874)
+||+|+|++... .......|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.||+.++
T Consensus 270 ~Ifti~v~~~~~~~~~~~~~~~~skL~lVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~ 349 (443)
T 2owm_A 270 AVFTIMLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSP 349 (443)
T ss_dssp EEEEEEEEEEC-------CCEEEEEEEEEECCCCCC--------------CCSSHHHHHHHHHHHHHCC-----------
T ss_pred EEEEEEEEEeecccCCCCcceEEEEEEEEECCCCccccccCCccccccchhhhcHHHHHHHHHHHHHhcccccccccccc
Confidence 999999987542 1233457999999999999999999999999999999999999999999998643
Q ss_pred -------------CCccCCCCccccccccccCCCceeeEEEecCCCCCCHHHHHHHHHHHHHhhccccCcCCc
Q 002847 281 -------------RHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHLGHEDS 340 (874)
Q Consensus 281 -------------~hIPYRDSKLTrLLqDSLGGNSKT~mIa~ISPs~~~~eETLsTLrFAsRAK~Ik~~~~~~ 340 (874)
.|||||||||||||||+|||||+|+|||||||+ +++||++||+||+|||+|++.+...
T Consensus 350 ~~~g~~~~~~~~~~hVPYRdSkLTrLLqdsLgGnskT~mIa~iSP~--~~~ETlsTLrfA~rak~I~n~~~vN 420 (443)
T 2owm_A 350 VKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT--DYDETLSTLRYADQAKRIRTRAVVN 420 (443)
T ss_dssp --------------CCCGGGSHHHHHSTTTTTSSCEEEEEEEECSS--CHHHHHHHHHHHHHHTTCEECCCCC
T ss_pred cccccccccccCCCcccCcccHhHHHHHHhhCCCCcEEEEEEeccc--cHHHHHHHHHHHHHHhhccccceec
Confidence 389999999999999999999999999999997 5999999999999999999766443
No 14
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=100.00 E-value=2.6e-84 Score=713.89 Aligned_cols=332 Identities=38% Similarity=0.610 Sum_probs=279.6
Q ss_pred ccccCCCCEEEEEEeCCCCCCcCCCCCCcEEEeCC--CceEEEecC----CCCceeEeceeeCCCCChHHHHHh-hHHHH
Q 002847 3 IVSAIAGNIRVFCRIRPISMGENFGRLRPVIAKDS--SNVLLKLAD----NKSKNYSFDKVFHPGSSQDEVFSE-VEPVI 75 (874)
Q Consensus 3 ~v~~~kgnIrV~VRIRPl~~~E~~~~~~~vI~~d~--~~v~l~~~~----~~~k~F~FD~VF~~~asQeeVF~~-V~PlV 75 (874)
...+.+++|+|+|||||++..|.......++.++. ..+.+.... ...+.|.||+||+++++|++||+. ++|+|
T Consensus 15 ~~~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv 94 (372)
T 3b6u_A 15 YFQGSSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAKQFELYDETFRPLV 94 (372)
T ss_dssp ------CBCEEEEEECCCCHHHHHTTCCBCEEEETTTTEEEECCTTCTTTCCCEEEECSEEECTTCCHHHHHHHTHHHHH
T ss_pred ccCCCCCCeEEEEEcCCCChhhhccCCceEEEEeCCCCEEEEECCCCCCCCCceEEEcCeEeCCcCchHHHHHHHHHHHH
Confidence 34567899999999999998886555555555543 334333221 235789999999999999999998 69999
Q ss_pred HHhhcCCCeeEEEeccCCCCcceeccCCC---CCCCcHHHHHHHHHHHHHh-cCCeeEEEEEEEEEecceeecccCCCCC
Q 002847 76 KSVLDGYNACIFAYGQTGTGKSFTMEGTP---DSPGIVPRAIEAIFKQAME-SNHAFRISFSMLEIYLGSLKDLLVTQPT 151 (874)
Q Consensus 76 ~svLdGyN~TIfAYGQTGSGKTyTM~Gs~---e~~GIIPRaledLF~~i~e-~~~~f~VsVS~lEIYNEkV~DLL~~~~~ 151 (874)
+++|+|||+||||||||||||||||+|.. +++|||||++++||+.+.. ....|.|++||+|||||+|+|||++...
T Consensus 95 ~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~ 174 (372)
T 3b6u_A 95 DSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQT 174 (372)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHHTBCTTSGGGBCHHHHHHHHHHHHHHTCSSCEEEEEEEEEEEETTEEEETTSSCTT
T ss_pred HHHhCCCeeeEEeecCCCCCCCEeEecCCCCcccCCcHHHHHHHHHHHhhhccCCceEEEEEEEEEeCCEEEECCCCCCC
Confidence 99999999999999999999999999965 4569999999999999865 4568999999999999999999976432
Q ss_pred CCCCCCCCcceeeecCCCcEEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEecCC---cc
Q 002847 152 KATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAP---ER 228 (874)
Q Consensus 152 ~~~~~~~~~L~I~ed~~ggv~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~d~~---e~ 228 (874)
..+.+++++.++++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|++.+.. ..
T Consensus 175 -------~~l~i~e~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~ 247 (372)
T 3b6u_A 175 -------KRLELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGEN 247 (372)
T ss_dssp -------CCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTTTCSSHHHHHHTSEEEEEEEEEEEC-----CC
T ss_pred -------CCceEEECCCCcEecCCCEEEEecCHHHHHHHHHHHHHhcCcccccCCCCCCcceEEEEEEEEEeecCCCCCc
Confidence 34889999999999999999999999999999999999999999999999999999999999876532 23
Q ss_pred ccccceeEEEeccCccccccccccchhhHHHHHhhhhHHHHHHHHHHHhcCC-CCccCCCCccccccccccCCCceeeEE
Q 002847 229 RREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRK-RHVPYRNSKLTQVLKDSLGEDSKTLML 307 (874)
Q Consensus 229 ~~~~SkL~LVDLAGSER~~kt~a~G~rlkEg~~INkSLsALg~VI~ALs~k~-~hIPYRDSKLTrLLqDSLGGNSKT~mI 307 (874)
....|+|+|||||||||..++++.|.|++|+.+||+||++||+||.||++++ .||||||||||+||||+|||||+|+||
T Consensus 248 ~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI 327 (372)
T 3b6u_A 248 HIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMV 327 (372)
T ss_dssp CEEEEEEEEEECCCCCE----------EEEGGGCCHHHHHHHHHHHHHHCC---CCCGGGSHHHHHTTTTTTSSSEEEEE
T ss_pred ceEEEEEEEEECCCCccccccCcchhhhhhHhhhhhhHHHHHHHHHHHhcCCCCCCcccccHHHHHHHHhcCCCccEEEE
Confidence 4567999999999999999999999999999999999999999999998865 699999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHhhccccCcCCch
Q 002847 308 VHVSPKEDDLCETICSLNFATRVKSVHLGHEDSN 341 (874)
Q Consensus 308 a~ISPs~~~~eETLsTLrFAsRAK~Ik~~~~~~~ 341 (874)
+||||+..+++||++||+||+|||+|++.+....
T Consensus 328 a~vsP~~~~~~ETlsTLrfA~rak~I~n~~~~n~ 361 (372)
T 3b6u_A 328 ANVGPASYNVEETLTTLRYANRAKNIKNKPRVNE 361 (372)
T ss_dssp EEECCBGGGHHHHHHHHHHHHHHTTCBCCCCCCC
T ss_pred EEeCCcccCHHHHHHHHHHHHHHhhccccceecC
Confidence 9999999999999999999999999998765443
No 15
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=100.00 E-value=4.1e-84 Score=711.39 Aligned_cols=323 Identities=36% Similarity=0.573 Sum_probs=276.9
Q ss_pred CCCEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEEEecC---CCCceeEeceeeCCC--------CChHHHHHh-hHHHH
Q 002847 8 AGNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLAD---NKSKNYSFDKVFHPG--------SSQDEVFSE-VEPVI 75 (874)
Q Consensus 8 kgnIrV~VRIRPl~~~E~~~~~~~vI~~d~~~v~l~~~~---~~~k~F~FD~VF~~~--------asQeeVF~~-V~PlV 75 (874)
.++|+|+|||||++..|.......++.++++.+.+.... ...+.|.||+||++. ++|++||+. ++|+|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~plv 82 (366)
T 2zfi_A 3 GASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEML 82 (366)
T ss_dssp -CCEEEEEEECCCCHHHHHTTCCBCEEEETTEEEECCTTCTTSCCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHHHHH
T ss_pred CCCcEEEEECCCCChhhccCCCCeEEEECCCcEEEeccCCCCCCceEEecceEeecCccccccccCcHHHHHHHHHHHHH
Confidence 479999999999999886555566777777766654332 235789999999987 899999998 58999
Q ss_pred HHhhcCCCeeEEEeccCCCCcceeccCCC--CCCCcHHHHHHHHHHHHHhc---CCeeEEEEEEEEEecceeecccCCCC
Q 002847 76 KSVLDGYNACIFAYGQTGTGKSFTMEGTP--DSPGIVPRAIEAIFKQAMES---NHAFRISFSMLEIYLGSLKDLLVTQP 150 (874)
Q Consensus 76 ~svLdGyN~TIfAYGQTGSGKTyTM~Gs~--e~~GIIPRaledLF~~i~e~---~~~f~VsVS~lEIYNEkV~DLL~~~~ 150 (874)
+++|+|||+||||||||||||||||+|++ +++|||||++++||+.+.+. ...|.|+|||+|||||+|+|||++..
T Consensus 83 ~~~l~G~N~tifAYGqTGSGKTyTm~G~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~ 162 (366)
T 2zfi_A 83 QHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKN 162 (366)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHHTBCSGGGCBCHHHHHHHHHHHHHHTCCCTTEEEEEEEEEEEEETTEEEETTCTTT
T ss_pred HHHhcCCeeEEEEeCCCCCCCceEeeCCCccCCCccHHHHHHHHHHHHhhcccCCeeEEEEEEEEEeeCCeEEEcccccc
Confidence 99999999999999999999999999984 57899999999999998753 45799999999999999999997653
Q ss_pred CCCCCCCCCcceeeecCCCcEEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEecCCc---
Q 002847 151 TKATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPE--- 227 (874)
Q Consensus 151 ~~~~~~~~~~L~I~ed~~ggv~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~d~~e--- 227 (874)
. ..+.|++++.++++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|++.....
T Consensus 163 ~-------~~l~ire~~~~g~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~ 235 (366)
T 2zfi_A 163 K-------GNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETN 235 (366)
T ss_dssp C-------SCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEECTTTT
T ss_pred C-------CCceEEEcCCCCEEEeCCEEEEECCHHHHHHHHHHHhhccccccccCCCCCCcceEEEEEEEEEecccCCCC
Confidence 2 348899999999999999999999999999999999999999999999999999999999998754321
Q ss_pred -cccccceeEEEeccCccccccccccchhhHHHHHhhhhHHHHHHHHHHHhc------------CCCCccCCCCcccccc
Q 002847 228 -RRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQR------------RKRHVPYRNSKLTQVL 294 (874)
Q Consensus 228 -~~~~~SkL~LVDLAGSER~~kt~a~G~rlkEg~~INkSLsALg~VI~ALs~------------k~~hIPYRDSKLTrLL 294 (874)
.....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.||+. +..||||||||||+||
T Consensus 236 ~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~~hvPyRdSkLT~lL 315 (366)
T 2zfi_A 236 ITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLL 315 (366)
T ss_dssp CEEEEEEEEEEEECCCGGGC------CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCGGGSHHHHHT
T ss_pred ccceeEeEEEEEeCCCCccccccCCCccchhhhhhHhHHHHHHHHHHHHHHhcccccccccccccCCcccccccHHHHHH
Confidence 233579999999999999999999999999999999999999999999986 3579999999999999
Q ss_pred ccccCCCceeeEEEecCCCCCCHHHHHHHHHHHHHhhccccCc
Q 002847 295 KDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHLGH 337 (874)
Q Consensus 295 qDSLGGNSKT~mIa~ISPs~~~~eETLsTLrFAsRAK~Ik~~~ 337 (874)
||+|||||+|+||+||||+..+++||++||+||+|||+|++.+
T Consensus 316 qdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~~ 358 (366)
T 2zfi_A 316 RENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTV 358 (366)
T ss_dssp GGGSSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHTC------
T ss_pred HHHhCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCCC
Confidence 9999999999999999999999999999999999999998655
No 16
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=100.00 E-value=1.6e-83 Score=702.35 Aligned_cols=327 Identities=38% Similarity=0.586 Sum_probs=267.0
Q ss_pred CCCCEEEEEEeCCCCC-CcCCCCCCcEEEeC---C--Cc--eEEEe--cCCCCceeEeceeeCCCCChHHHHHhhHHHHH
Q 002847 7 IAGNIRVFCRIRPISM-GENFGRLRPVIAKD---S--SN--VLLKL--ADNKSKNYSFDKVFHPGSSQDEVFSEVEPVIK 76 (874)
Q Consensus 7 ~kgnIrV~VRIRPl~~-~E~~~~~~~vI~~d---~--~~--v~l~~--~~~~~k~F~FD~VF~~~asQeeVF~~V~PlV~ 76 (874)
++|||+|+|||||+.. .|... ..++.+. + .. +.+.. .....+.|.||+||+++++|++||+.|.|+|+
T Consensus 1 lk~nIrV~vRvRP~~~~~e~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~v~~lv~ 78 (347)
T 1f9v_A 1 MRGNIRVYCRIRPALKNLENSD--TSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEVGQLVQ 78 (347)
T ss_dssp --CEEEEEEEECCCCTTTCCCT--TEEEEECCCBTTTTBEEEEEEEGGGTTCEEEEEESEEECTTCCHHHHHHHHHHHHG
T ss_pred CCCCeEEEEEeCCCCcccccCC--CceEEEecccCCCCceEEEEecCCCCcCceEEeeCEEECCCCCHHHHHHHHHHHHH
Confidence 5899999999999987 44321 2233332 1 11 22222 12345789999999999999999999999999
Q ss_pred HhhcCCCeeEEEeccCCCCcceeccCCCCCCCcHHHHHHHHHHHHHh---cCCeeEEEEEEEEEecceeecccCCCCCCC
Q 002847 77 SVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAME---SNHAFRISFSMLEIYLGSLKDLLVTQPTKA 153 (874)
Q Consensus 77 svLdGyN~TIfAYGQTGSGKTyTM~Gs~e~~GIIPRaledLF~~i~e---~~~~f~VsVS~lEIYNEkV~DLL~~~~~~~ 153 (874)
++|+|||+||||||||||||||||+|+ ++|||||++++||+.+.. ....|.|++||+|||||+|+|||++.....
T Consensus 79 ~~l~G~n~tifAYGqTGSGKTyTM~G~--~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~ 156 (347)
T 1f9v_A 79 SSLDGYNVCIFAYGQTGSGKTFTMLNP--GDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNK 156 (347)
T ss_dssp GGGGTCCEEEEEECCTTSSHHHHHHST--TTSHHHHHHHHHHHHHHHHGGGTCEEEEEEEEEEEETTEEEETTC------
T ss_pred HhcCCceeEEEEECCCCCCCcEeccCC--CCCchHHHHHHHHHHHHhhhhcCCceEEEEEEEEEECCeeeeccCCccccc
Confidence 999999999999999999999999995 479999999999998853 456899999999999999999998764321
Q ss_pred CC-CCCCcceeeec-CCCcEEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEecCCccccc
Q 002847 154 TD-PLPPCLSIHTE-PKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPERRRE 231 (874)
Q Consensus 154 ~~-~~~~~L~I~ed-~~ggv~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~d~~e~~~~ 231 (874)
.. .....+.++++ ..++++|.|++++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|.+.+...+...
T Consensus 157 ~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~ 236 (347)
T 1f9v_A 157 EDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKTGAHS 236 (347)
T ss_dssp -------CCCEEEETTTTEEEETTCCCEECSSGGGHHHHHHHHC-----------CCGGGSEEEEEEEEEEECC--CCEE
T ss_pred cccccCCceeEEEecCCCceEecCCEEEEcCCHHHHHHHHHHHHhccceeeccCCCCCCCceEEEEEEEEEecCCCCcee
Confidence 10 11234667765 46789999999999999999999999999999999999999999999999999998876666667
Q ss_pred cceeEEEeccCccccccccccchhhHHHHHhhhhHHHHHHHHHHHhcCC---CCccCCCCccccccccccCCCceeeEEE
Q 002847 232 KNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRK---RHVPYRNSKLTQVLKDSLGEDSKTLMLV 308 (874)
Q Consensus 232 ~SkL~LVDLAGSER~~kt~a~G~rlkEg~~INkSLsALg~VI~ALs~k~---~hIPYRDSKLTrLLqDSLGGNSKT~mIa 308 (874)
.|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.||+.++ .||||||||||+||||+|||||+|+|||
T Consensus 237 ~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt~mI~ 316 (347)
T 1f9v_A 237 YGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFV 316 (347)
T ss_dssp EEEEEEEECCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTSCC---CCCCGGGSHHHHHHHHHHSTTCEEEEEE
T ss_pred eeEEEEEECCCCccccccccchhhhHHHHHHhHHHHHHHHHHHHHhcccCCCCcCccccCHHHHHHHHHhCCCccEEEEE
Confidence 8999999999999999999999999999999999999999999998865 8999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhhccccCc
Q 002847 309 HVSPKEDDLCETICSLNFATRVKSVHLGH 337 (874)
Q Consensus 309 ~ISPs~~~~eETLsTLrFAsRAK~Ik~~~ 337 (874)
||||+..+++||++||+||+||++|++++
T Consensus 317 ~vsP~~~~~~ETl~TLrfA~r~~~i~~~~ 345 (347)
T 1f9v_A 317 NISPSSSHINETLNSLRFASKVNSTRLVS 345 (347)
T ss_dssp EECCSGGGHHHHHHHHHHHHHHCCTTTC-
T ss_pred EeCCccccHHHHHHHHHHHHHHhhhccCC
Confidence 99999999999999999999999999765
No 17
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=100.00 E-value=2.7e-84 Score=714.34 Aligned_cols=328 Identities=38% Similarity=0.562 Sum_probs=272.8
Q ss_pred cCCCCEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEEEe---cCCCCceeEeceeeCCCCChHHHHHh-hHHHHHHhhcC
Q 002847 6 AIAGNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKL---ADNKSKNYSFDKVFHPGSSQDEVFSE-VEPVIKSVLDG 81 (874)
Q Consensus 6 ~~kgnIrV~VRIRPl~~~E~~~~~~~vI~~d~~~v~l~~---~~~~~k~F~FD~VF~~~asQeeVF~~-V~PlV~svLdG 81 (874)
+.++||+|+|||||++..|.......++.+.+...++.. .....+.|.||+||+++++|++||+. ++|+|+++|+|
T Consensus 20 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~G 99 (373)
T 2wbe_C 20 KSNQNIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLTKKFTFDRSFGPESKQCDVYSVVVSPLIEEVLNG 99 (373)
T ss_dssp CCCEECEEEEEECCCCHHHHHHTCCBCEEEETTTEEEESSSSSSTTCEEEECSEEECTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCeEEEEEcCCCChhhhccCCCceEEEcCCCeEEEecCCCCCCceEEeccEEeccccchhHHHHHHHHHHHHHHhCC
Confidence 457899999999999988864444445555444433322 12346789999999999999999998 69999999999
Q ss_pred CCeeEEEeccCCCCcceeccCCCC-----------CCCcHHHHHHHHHHHHHhcCCeeEEEEEEEEEecceeecccCCCC
Q 002847 82 YNACIFAYGQTGTGKSFTMEGTPD-----------SPGIVPRAIEAIFKQAMESNHAFRISFSMLEIYLGSLKDLLVTQP 150 (874)
Q Consensus 82 yN~TIfAYGQTGSGKTyTM~Gs~e-----------~~GIIPRaledLF~~i~e~~~~f~VsVS~lEIYNEkV~DLL~~~~ 150 (874)
||+||||||||||||||||+|++. ++|||||++++||+.+......|.|++||+|||||+|+|||.+..
T Consensus 100 ~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~v~vS~~EIYnE~i~DLL~~~~ 179 (373)
T 2wbe_C 100 YNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRMMEVEYTMRISYLELYNEELCDLLSTDD 179 (373)
T ss_dssp CCEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEETTEEEESSCTTS
T ss_pred ceEEEEeecCCCCCcceecccCccccccccccccCCCcChHHHHHHHHHHHHhcCceEEEEEEEEEEeCCeEEECCCCCC
Confidence 999999999999999999999754 679999999999999988888999999999999999999997643
Q ss_pred CCCCCCCCCcceeeec--CCCcEEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEecCC--
Q 002847 151 TKATDPLPPCLSIHTE--PKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAP-- 226 (874)
Q Consensus 151 ~~~~~~~~~~L~I~ed--~~ggv~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~d~~-- 226 (874)
. ..+.++++ ..++++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|+.....
T Consensus 180 ~-------~~l~i~~~~~~~g~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~ 252 (373)
T 2wbe_C 180 T-------TKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIE 252 (373)
T ss_dssp C-------SCCCEEECSSSSSCEEETTCCCEEESSHHHHHHHHHHHHHHHTTTCSCHHHHHHHSEEEEEEEEEECTTCTT
T ss_pred C-------CCceeEeccCCCCcEEecCceEEccCCHHHHHHHHHHHhhhhccccccCCCCCCCccEEEEEEEEEecCCCC
Confidence 2 23677776 467899999999999999999999999999999999999999999999999999875432
Q ss_pred -ccccccceeEEEeccCcccccccccc-chhhHHHHHhhhhHHHHHHHHHHHhcCCCCccCCCCccccccccccCCCcee
Q 002847 227 -ERRREKNKIWLVDLGGSERVLKTKAR-GRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVLKDSLGEDSKT 304 (874)
Q Consensus 227 -e~~~~~SkL~LVDLAGSER~~kt~a~-G~rlkEg~~INkSLsALg~VI~ALs~k~~hIPYRDSKLTrLLqDSLGGNSKT 304 (874)
......|+|+|||||||||+.++++. |.|++|+.+||+||++||+||.||+.+..||||||||||+||||+|||||+|
T Consensus 253 ~~~~~~~skL~lVDLAGSEr~~~t~~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt 332 (373)
T 2wbe_C 253 GEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRAPHVPYRESKLTRLLQESLGGRTKT 332 (373)
T ss_dssp TCCEEEEEEEEEEECCCC--------------------CHHHHHHHHHHHHHHHCSSCCCGGGCHHHHHTHHHHHSSSEE
T ss_pred CCcceeEEEEEEEECCCCCccccccCccccchhHHHHHHHHHHHHHHHHHHHHcCCCcCccccchHHHHHHHHhCCCceE
Confidence 22345799999999999999999887 9999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCCCCHHHHHHHHHHHHHhhccccCcCCc
Q 002847 305 LMLVHVSPKEDDLCETICSLNFATRVKSVHLGHEDS 340 (874)
Q Consensus 305 ~mIa~ISPs~~~~eETLsTLrFAsRAK~Ik~~~~~~ 340 (874)
+||+||||+..+++||++||+||+|||+|++.+..+
T Consensus 333 ~mIa~isP~~~~~~ETlsTLrfA~rak~I~n~p~vN 368 (373)
T 2wbe_C 333 SIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVN 368 (373)
T ss_dssp EEEEEECCBGGGHHHHHHHHHHHHHHHTCEECCCCC
T ss_pred EEEEEeCCCcccHHHHHHHHHHHHHHhhccccceec
Confidence 999999999999999999999999999999776543
No 18
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=100.00 E-value=1.3e-83 Score=716.67 Aligned_cols=330 Identities=41% Similarity=0.599 Sum_probs=277.5
Q ss_pred cccccCCCCEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEEEecCC------CCceeEeceeeCCCCChHHHHHhhHHHH
Q 002847 2 LIVSAIAGNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADN------KSKNYSFDKVFHPGSSQDEVFSEVEPVI 75 (874)
Q Consensus 2 ~~v~~~kgnIrV~VRIRPl~~~E~~~~~~~vI~~d~~~v~l~~~~~------~~k~F~FD~VF~~~asQeeVF~~V~PlV 75 (874)
+.+.+++|||+|||||||+...|.......+...++..+.+..... ..+.|.||+||+++++|++||+.|.|+|
T Consensus 52 n~~~~l~gnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~~Q~~Vf~~v~plv 131 (412)
T 3u06_A 52 NTVMDLRDNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLI 131 (412)
T ss_dssp HHHHHHTCSEEEEEEECCCCGGGTTSCBCEEEEEETTEEEEECCC-------CCCEEECSEEECTTCCHHHHHTTTHHHH
T ss_pred HHHHHhCCCEEEEEEcCCCCchhccCcceEEEecCCCEEEEecCCcccccccCceEEeeCeEcCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999988865443333344555554433221 2468999999999999999999899999
Q ss_pred HHhhcCCCeeEEEeccCCCCcceeccCCCCCCCcHHHHHHHHHHHHHh---cCCeeEEEEEEEEEecceeecccCCCCCC
Q 002847 76 KSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAME---SNHAFRISFSMLEIYLGSLKDLLVTQPTK 152 (874)
Q Consensus 76 ~svLdGyN~TIfAYGQTGSGKTyTM~Gs~e~~GIIPRaledLF~~i~e---~~~~f~VsVS~lEIYNEkV~DLL~~~~~~ 152 (874)
+++|+|||+||||||||||||||||+|.++++|||||++++||+.+.. ....|.|++||+|||||+|+|||.+...
T Consensus 132 ~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~- 210 (412)
T 3u06_A 132 QSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQK- 210 (412)
T ss_dssp HHHHTTCCEEEEEESSTTSSHHHHHTEETTEECHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTCCSCC-
T ss_pred HHHHCCCceEEEEecCCCCCCeeEecCCCCCCccHHHHHHHHHHhhhhhcccCceEEEEEEEEEEeCCeeEEcCCCCCC-
Confidence 999999999999999999999999999999999999999999998854 3568999999999999999999965432
Q ss_pred CCCCCCCcceeeecCCCcEEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEecCCcccccc
Q 002847 153 ATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPERRREK 232 (874)
Q Consensus 153 ~~~~~~~~L~I~ed~~ggv~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~d~~e~~~~~ 232 (874)
+..+++.+++.++++|.|++++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|.+.+........
T Consensus 211 -----~~~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~ 285 (412)
T 3u06_A 211 -----DMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISV 285 (412)
T ss_dssp -----CCCEEECSSCTTSEEETTCCCEECCSHHHHHHHHHHHHHHCC-----CHHHHTTCEEEEEEEEEEEETTTTEEEE
T ss_pred -----CceeeeeecCCCCEEEcceEEEEeCCHHHHHHHHHHHHhcccccccCCCCCCcCceEEEEEEEEEEeCCCCCEEE
Confidence 223566678899999999999999999999999999999999999999999999999999999988776666778
Q ss_pred ceeEEEeccCccccccccccchhhHHHHHhhhhHHHHHHHHHHHhcCCCCccCCCCccccccccccCCCceeeEEEecCC
Q 002847 233 NKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSP 312 (874)
Q Consensus 233 SkL~LVDLAGSER~~kt~a~G~rlkEg~~INkSLsALg~VI~ALs~k~~hIPYRDSKLTrLLqDSLGGNSKT~mIa~ISP 312 (874)
|+|+|||||||||.. .+.|++|+.+||+||++||+||.||+.++.||||||||||+||||+|||||+|+||+||||
T Consensus 286 ~kL~lVDLAGSEr~~----~~~rl~E~~~INkSL~aLg~vI~aL~~~~~hiPyRdSkLT~LLqdsLgGnskt~mI~~vsP 361 (412)
T 3u06_A 286 GSINLVDLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSP 361 (412)
T ss_dssp EEEEEEECCCCCC--------------CTTTHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHHGGGTSTTCEEEEEEEECC
T ss_pred EEEEEEECCCCCcCC----ccchhHhHHHHhHHHHHHHHHHHHHhccCCCCCccccHHHHHHHHhcCCCceEEEEEEeCC
Confidence 999999999999974 4689999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhccccCcCCch
Q 002847 313 KEDDLCETICSLNFATRVKSVHLGHEDSN 341 (874)
Q Consensus 313 s~~~~eETLsTLrFAsRAK~Ik~~~~~~~ 341 (874)
+..+++||++||+||+|+++|++++...+
T Consensus 362 ~~~~~~ETl~TLrfA~rv~~i~~~~~~~n 390 (412)
T 3u06_A 362 FQDCFQESVKSLRFAASVNSCKMTKAKRN 390 (412)
T ss_dssp BGGGHHHHHHHHHHHHHHHHHCC------
T ss_pred ChhhHHHHHHHHHHHHHHhhccccccccc
Confidence 99999999999999999999997654443
No 19
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=100.00 E-value=1.5e-83 Score=701.71 Aligned_cols=319 Identities=35% Similarity=0.573 Sum_probs=262.8
Q ss_pred ccCCCCEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEEEecCCCCceeEeceeeCCCCChHHHHHh-hHHHHHHhhcCCC
Q 002847 5 SAIAGNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADNKSKNYSFDKVFHPGSSQDEVFSE-VEPVIKSVLDGYN 83 (874)
Q Consensus 5 ~~~kgnIrV~VRIRPl~~~E~~~~~~~vI~~d~~~v~l~~~~~~~k~F~FD~VF~~~asQeeVF~~-V~PlV~svLdGyN 83 (874)
....++|+|+|||||++..|...+...++.+++....+.. +..+.|.||+||+++++|++||+. ++|+|+++|+|||
T Consensus 7 ~~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~--~~~~~f~FD~Vf~~~~~Q~~vy~~~~~plv~~~l~G~n 84 (344)
T 4a14_A 7 GAEEAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTL--GRDRHFGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFN 84 (344)
T ss_dssp --CCCCCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEE--TTTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCC
T ss_pred CccccceEEEEEecccchHHHhccCeeEEEEcCCCceEEe--cccceEEEEEEEecCcchhHHHHHHHHHHHHHHHhhcC
Confidence 3457899999999999998864444455555444433333 346899999999999999999998 7999999999999
Q ss_pred eeEEEeccCCCCcceeccCC------CCCCCcHHHHHHHHHHHHHhc-CCeeEEEEEEEEEecceeecccCCCCCCCCCC
Q 002847 84 ACIFAYGQTGTGKSFTMEGT------PDSPGIVPRAIEAIFKQAMES-NHAFRISFSMLEIYLGSLKDLLVTQPTKATDP 156 (874)
Q Consensus 84 ~TIfAYGQTGSGKTyTM~Gs------~e~~GIIPRaledLF~~i~e~-~~~f~VsVS~lEIYNEkV~DLL~~~~~~~~~~ 156 (874)
+||||||||||||||||+|+ ++++|||||++++||+.+.+. ...|.|++||+|||||+|+|||++...
T Consensus 85 ~tifAYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~----- 159 (344)
T 4a14_A 85 ATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGTA----- 159 (344)
T ss_dssp EEEEEESSTTSSHHHHHCC--------CCCCHHHHHHHHHHHHHHHCTTSEEEEEEEEEEEETTEEEETTSSCCC-----
T ss_pred eeEEEecccCCCceEeecccchhhhhhcccCCchHHHHHHHHhcccccceeeEEEEehhhhhHHHHHHHHHhccc-----
Confidence 99999999999999999997 467999999999999998754 568999999999999999999976432
Q ss_pred CCCcceeeecCCCcEEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEecCC--------cc
Q 002847 157 LPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAP--------ER 228 (874)
Q Consensus 157 ~~~~L~I~ed~~ggv~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~d~~--------e~ 228 (874)
...+.+++++.++++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|++.+.. ..
T Consensus 160 -~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~ 238 (344)
T 4a14_A 160 -SRDIQLREDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPG 238 (344)
T ss_dssp -GGGCEEEECTTSCEEEESCCCEECCSHHHHHHHHHHHHHHHHC------CCGGGSEEEEEEEEEEEC------------
T ss_pred -cccceeeeccCCCEEEEeeeeccccCHHHHHHHHHhcchhcccCcchhhhcccccceEEEEEeeeCCCCcccCCCcccc
Confidence 245899999999999999999999999999999999999999999999999999999999999876432 23
Q ss_pred ccccceeEEEeccCccccccccccchhhHHHHHhhhhHHHHHHHHHHHhcC---CCCccCCCCccccccccccCCCceee
Q 002847 229 RREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRR---KRHVPYRNSKLTQVLKDSLGEDSKTL 305 (874)
Q Consensus 229 ~~~~SkL~LVDLAGSER~~kt~a~G~rlkEg~~INkSLsALg~VI~ALs~k---~~hIPYRDSKLTrLLqDSLGGNSKT~ 305 (874)
....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.||+++ ..||||||||||+||||+|||||+|+
T Consensus 239 ~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~ 318 (344)
T 4a14_A 239 QLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKITRILKDSLGGNAKTV 318 (344)
T ss_dssp CEEEEEEEEEECCCCCCC--------------CCCSHHHHHHHHHHHHTCTTTTTSCCCGGGCHHHHHTTTSSSTTSEEE
T ss_pred ceeeeeeeEEecccchhhcccCCchhhhhhheeechhHHhhhhHHHhcCCccccCCCCCcchhhHHHHhHhhcCCCcceE
Confidence 345799999999999999999999999999999999999999999999863 46999999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHhh
Q 002847 306 MLVHVSPKEDDLCETICSLNFATRVK 331 (874)
Q Consensus 306 mIa~ISPs~~~~eETLsTLrFAsRAK 331 (874)
||+||||+..+++||++||+||+|||
T Consensus 319 mI~~vsP~~~~~~ETl~TL~fA~rAk 344 (344)
T 4a14_A 319 MIACVSPSSSDFDETLNTLNYASRAQ 344 (344)
T ss_dssp EEEEECCBGGGHHHHHHHHHHHHHTC
T ss_pred EEEEeCCCccchhHHhhhhhhhhhcC
Confidence 99999999999999999999999996
No 20
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=100.00 E-value=3.3e-83 Score=701.50 Aligned_cols=319 Identities=39% Similarity=0.617 Sum_probs=259.3
Q ss_pred CCEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEEEec---------CCCCceeEeceee--------CCCCChHHHHHh-
Q 002847 9 GNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLA---------DNKSKNYSFDKVF--------HPGSSQDEVFSE- 70 (874)
Q Consensus 9 gnIrV~VRIRPl~~~E~~~~~~~vI~~d~~~v~l~~~---------~~~~k~F~FD~VF--------~~~asQeeVF~~- 70 (874)
.||+|+|||||++..|......+++.++++.+++... ....+.|.||+|| ++.++|++||+.
T Consensus 1 S~VkV~vRvRPl~~~E~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~k~F~FD~vF~~~d~~~~~~~a~Q~~vy~~~ 80 (354)
T 3gbj_A 1 SKVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCL 80 (354)
T ss_dssp -CEEEEEEECCCCHHHHHHTCCBCEEEETTEEEECCC-----------CCEEEECSEEEECSCTTCTTTBCCHHHHHHHH
T ss_pred CCcEEEEECCCCChhhhccCCceEEEeCCCeEEEeCCccccccccccCCceEEEeeEEeccCccccccccccHHHHHHHh
Confidence 4899999999999988655556677777776655321 1245789999999 456899999998
Q ss_pred hHHHHHHhhcCCCeeEEEeccCCCCcceeccCCCCCCCcHHHHHHHHHHHHHh---cCCeeEEEEEEEEEecceeecccC
Q 002847 71 VEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAME---SNHAFRISFSMLEIYLGSLKDLLV 147 (874)
Q Consensus 71 V~PlV~svLdGyN~TIfAYGQTGSGKTyTM~Gs~e~~GIIPRaledLF~~i~e---~~~~f~VsVS~lEIYNEkV~DLL~ 147 (874)
+.|+|+++|+|||+||||||||||||||||+|+++++|||||++++||+.+.. ....|.|+|||+|||||+|+|||+
T Consensus 81 ~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~ 160 (354)
T 3gbj_A 81 GENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLD 160 (354)
T ss_dssp HHHHHHHHHTTCCEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHCBTTEEEEEEEEEEEEETTEEEETTC
T ss_pred hHHHHHHHhCCceeEEEeeCCCCCCCceEEecCCCCCchhhHHHHHHHHHHHhhcccccceeeeceeEEEecCeeeEccC
Confidence 58999999999999999999999999999999999999999999999998853 345799999999999999999997
Q ss_pred CCCCCCCCCCCCcceeeecCCCcEEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEec---
Q 002847 148 TQPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFD--- 224 (874)
Q Consensus 148 ~~~~~~~~~~~~~L~I~ed~~ggv~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~d--- 224 (874)
+... ...+.+++++.++++|.||+++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|++..
T Consensus 161 ~~~~------~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~ 234 (354)
T 3gbj_A 161 PKGS------RQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDV 234 (354)
T ss_dssp ------------CBCBC------CCBTTCCCEEECSHHHHHHHHHHHHHCC----------CTTSEEEEEEEEEEEEECT
T ss_pred CCCC------CcceEEEEcCCCCEEEEeeEEEecCCHHHHHHHHHHHHhcCCeeecCCCCCCCcccEEEEEEEEEEeccc
Confidence 6532 2358899999999999999999999999999999999999999999999999999999999998652
Q ss_pred -CCccccccceeEEEeccCccccccccccchhhHHHHHhhhhHHHHHHHHHHHhc------CCCCccCCCCccccccccc
Q 002847 225 -APERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQR------RKRHVPYRNSKLTQVLKDS 297 (874)
Q Consensus 225 -~~e~~~~~SkL~LVDLAGSER~~kt~a~G~rlkEg~~INkSLsALg~VI~ALs~------k~~hIPYRDSKLTrLLqDS 297 (874)
........|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.||+. +..||||||||||+||||+
T Consensus 235 ~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~hvPyRdSkLT~lLqds 314 (354)
T 3gbj_A 235 KSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDS 314 (354)
T ss_dssp TSCEEEEEEEEEEEEECCCCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHC------CCCCCGGGSHHHHHTHHH
T ss_pred CCCCCCeeEEEEEEEECCCCCchhhcCCccccchhHHHhhHHHHHHHHHHHHHHhhhcccCCCCcccccccHHHHHHHHH
Confidence 222334679999999999999999999999999999999999999999999985 4579999999999999999
Q ss_pred cCCCceeeEEEecCCCCCCHHHHHHHHHHHHHhhcc
Q 002847 298 LGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSV 333 (874)
Q Consensus 298 LGGNSKT~mIa~ISPs~~~~eETLsTLrFAsRAK~I 333 (874)
|||||+|+|||||||+..+++||++||+||.||+.-
T Consensus 315 LgGnskt~mIa~vsP~~~~~~ETlsTLr~a~~~~~~ 350 (354)
T 3gbj_A 315 LGGNSKTAMVATVSPAADNYDETLSTLRYADRAKHH 350 (354)
T ss_dssp HSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHC--
T ss_pred hCCCCeEEEEEEeCCCcchHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999853
No 21
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.8e-83 Score=708.16 Aligned_cols=334 Identities=37% Similarity=0.541 Sum_probs=276.7
Q ss_pred cccccCCCCEEEEEEeCCCCCC-cCCCCCCcEEE-eCCC--c--eEEEec--CCCCceeEeceeeCCCCChHHHHHhhHH
Q 002847 2 LIVSAIAGNIRVFCRIRPISMG-ENFGRLRPVIA-KDSS--N--VLLKLA--DNKSKNYSFDKVFHPGSSQDEVFSEVEP 73 (874)
Q Consensus 2 ~~v~~~kgnIrV~VRIRPl~~~-E~~~~~~~vI~-~d~~--~--v~l~~~--~~~~k~F~FD~VF~~~asQeeVF~~V~P 73 (874)
+.+.+++|||||||||||+... |........+. .++. . +.+... ....+.|.||+||+++++|++||+.|.|
T Consensus 52 n~~~elkgnIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~~~Q~~Vf~~v~~ 131 (403)
T 4etp_A 52 NELQELRGNIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEVGQ 131 (403)
T ss_dssp HHHHHHHCSEEEEEEECCCCTTTSCSCCTTEEECCCBTTTTBEEEEEEECSSSCEEEEEEESEEECTTCCHHHHHHHHHH
T ss_pred HHHHHcCCCeEEEEEeCCCCCcccccCCCeeEEeeccCCCCceEEEEecCCCCcCceEEEcCEEECCCCchHHHHHHHHH
Confidence 4578999999999999999876 33222111111 1221 1 112211 1234789999999999999999999999
Q ss_pred HHHHhhcCCCeeEEEeccCCCCcceeccCCCCCCCcHHHHHHHHHHHHHh---cCCeeEEEEEEEEEecceeecccCCCC
Q 002847 74 VIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAME---SNHAFRISFSMLEIYLGSLKDLLVTQP 150 (874)
Q Consensus 74 lV~svLdGyN~TIfAYGQTGSGKTyTM~Gs~e~~GIIPRaledLF~~i~e---~~~~f~VsVS~lEIYNEkV~DLL~~~~ 150 (874)
+|+++|+|||+||||||||||||||||+|+ ++|||||++++||+.+.. ....|.|++||+|||||+|+|||.+..
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM~g~--~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~ 209 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTMLNP--GDGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDN 209 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHHHCT--TTSHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEEEETTEEEETTCC--
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEeCCC--CCccchhHHHHHHHHHHhhhccCceEEEEEEEEEEecceeeEccCCcc
Confidence 999999999999999999999999999996 469999999999998754 456899999999999999999998764
Q ss_pred CCCC-CCCCCcceeeecC-CCcEEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEecCCcc
Q 002847 151 TKAT-DPLPPCLSIHTEP-KGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPER 228 (874)
Q Consensus 151 ~~~~-~~~~~~L~I~ed~-~ggv~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~d~~e~ 228 (874)
.... ......+.+++++ .++++|.|++++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|.+.+...+
T Consensus 210 ~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~ 289 (403)
T 4etp_A 210 NNKEDTSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTG 289 (403)
T ss_dssp ------CCSCCCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHHC--C----CHHHHHHHTSEEEEEEEEEEEETTTC
T ss_pred ccccccccCcceeeEEeCCCCCEEecCcEEEEeCCHHHHHHHHHHHHHhcccccccCCcccCCcccEEEEEEEEeecCCC
Confidence 3211 1123346676665 5679999999999999999999999999999999999999999999999999998887666
Q ss_pred ccccceeEEEeccCccccccccccchhhHHHHHhhhhHHHHHHHHHHHhcCCC---CccCCCCccccccccccCCCceee
Q 002847 229 RREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKR---HVPYRNSKLTQVLKDSLGEDSKTL 305 (874)
Q Consensus 229 ~~~~SkL~LVDLAGSER~~kt~a~G~rlkEg~~INkSLsALg~VI~ALs~k~~---hIPYRDSKLTrLLqDSLGGNSKT~ 305 (874)
....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.||+.+.. ||||||||||+||||+|||||+|+
T Consensus 290 ~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~LLqdsLgGnskt~ 369 (403)
T 4etp_A 290 AHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTL 369 (403)
T ss_dssp CEEEEEEEEEECCCCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTSSCTTTSCCCGGGSHHHHHTGGGTSTTCEEE
T ss_pred CeeEEEEEEEECCCCccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccchHHHHHHHhcCCCceEE
Confidence 67789999999999999999999999999999999999999999999987654 999999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHhhccccCc
Q 002847 306 MLVHVSPKEDDLCETICSLNFATRVKSVHLGH 337 (874)
Q Consensus 306 mIa~ISPs~~~~eETLsTLrFAsRAK~Ik~~~ 337 (874)
||+||||+..+++||++||+||+|+++|++++
T Consensus 370 mi~~vsP~~~~~~ETl~TL~fA~rv~~~~~~~ 401 (403)
T 4etp_A 370 MFVNISPSSSHINETLNSLRFASKVNSTRLVS 401 (403)
T ss_dssp EEEEECCSGGGHHHHHHHHHHHHHHCCC----
T ss_pred EEEEeCCchhhHHHHHHHHHHHHHHhhcccCC
Confidence 99999999999999999999999999999765
No 22
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=3e-82 Score=695.03 Aligned_cols=320 Identities=36% Similarity=0.553 Sum_probs=254.3
Q ss_pred cCCCCEEEEEEeCCCCCCcCCCCCCcEEEeCCCc-eEEEec----------CCCCceeEeceeeCCCCChHHHHHh-hHH
Q 002847 6 AIAGNIRVFCRIRPISMGENFGRLRPVIAKDSSN-VLLKLA----------DNKSKNYSFDKVFHPGSSQDEVFSE-VEP 73 (874)
Q Consensus 6 ~~kgnIrV~VRIRPl~~~E~~~~~~~vI~~d~~~-v~l~~~----------~~~~k~F~FD~VF~~~asQeeVF~~-V~P 73 (874)
+.+|||+|||||||+...|.. .+...++.. +.+... ....+.|.||+||+ +++|++||+. ++|
T Consensus 21 ~~~~~i~V~vRvRP~~~~e~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~-~~sQ~~Vy~~~~~p 95 (359)
T 3nwn_A 21 GTRKKVHAFVRVKPTDDFAHE----MIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAKD 95 (359)
T ss_dssp ---CCEEEEEEECCCSSCCTT----TEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHTHH
T ss_pred CCCCCEEEEEEcCCCCccccc----ceeecCCCcEEEEecCCccccccccCCcCceEeecCccCC-CCCHHHHHHHHHHH
Confidence 568999999999999876632 122222222 222221 12346799999997 5899999998 589
Q ss_pred HHHHhhcCCCeeEEEeccCCCCcceeccCCCC---CCCcHHHHHHHHHHHHHh-cCCeeEEEEEEEEEecceeecccCCC
Q 002847 74 VIKSVLDGYNACIFAYGQTGTGKSFTMEGTPD---SPGIVPRAIEAIFKQAME-SNHAFRISFSMLEIYLGSLKDLLVTQ 149 (874)
Q Consensus 74 lV~svLdGyN~TIfAYGQTGSGKTyTM~Gs~e---~~GIIPRaledLF~~i~e-~~~~f~VsVS~lEIYNEkV~DLL~~~ 149 (874)
+|+++|+|||+||||||||||||||||+|+.. ++|||||++++||+.+.. ....|.|+|||+|||||+|+|||++.
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~ 175 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLSTL 175 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCTTSCEEEEEEEEEEETTEEEETTSSS
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEeCCccCCccchhhHHHHHHHHHHHhhcCCCCcEEEEEEEEEEeccccccccccc
Confidence 99999999999999999999999999999764 489999999999998865 45689999999999999999999875
Q ss_pred CCCCCCCCCCcceeeecCCCcEEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEecC--Cc
Q 002847 150 PTKATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDA--PE 227 (874)
Q Consensus 150 ~~~~~~~~~~~L~I~ed~~ggv~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~d~--~e 227 (874)
+... +....+.+++++. |++|.|++++.|.+++|++++|..|.++|.+++|.+|..|||||+||+|+|.+... .+
T Consensus 176 ~~~~--~~~~~~~~~~~~~-g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~~ 252 (359)
T 3nwn_A 176 PYVG--PSVTPMTIVENPQ-GVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSE 252 (359)
T ss_dssp TTSC--TTTSCCEEEEETT-EEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC------
T ss_pred cccc--cccccceEEecCC-ceEEeccEEEEecCHHHHHHHHHhhhhhcccccccCccccCcceEEEEEEEEeecccccC
Confidence 4322 2234466777665 69999999999999999999999999999999999999999999999999986543 23
Q ss_pred cccccceeEEEeccCccccccccccchhhHHHHHhhhhHHHHHHHHHHHhc-CCCCccCCCCccccccccccCCCceeeE
Q 002847 228 RRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQR-RKRHVPYRNSKLTQVLKDSLGEDSKTLM 306 (874)
Q Consensus 228 ~~~~~SkL~LVDLAGSER~~kt~a~G~rlkEg~~INkSLsALg~VI~ALs~-k~~hIPYRDSKLTrLLqDSLGGNSKT~m 306 (874)
.....|+|+|||||||||+.++++.|.+++|+.+||+||++||+||.||++ ++.||||||||||+||||+|||||+|+|
T Consensus 253 ~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~~Lg~vI~aL~~~~~~hVPYRdSkLT~lLqdsLgGnskt~m 332 (359)
T 3nwn_A 253 EKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVL 332 (359)
T ss_dssp -CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSSEEEE
T ss_pred cccccccceeeeccccccccccCCchhHHHhhhhhcccHHHHHHHHHHHHhcCCCcCCcccCHHHHHHHHhcCCCccEEE
Confidence 445679999999999999999999999999999999999999999999986 4579999999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHhhcc
Q 002847 307 LVHVSPKEDDLCETICSLNFATRVKSV 333 (874)
Q Consensus 307 Ia~ISPs~~~~eETLsTLrFAsRAK~I 333 (874)
||||||+..+++||++||+||+|||+|
T Consensus 333 I~~isP~~~~~~ETlsTL~fA~rak~I 359 (359)
T 3nwn_A 333 VTNIYGEAAQLEETLSSLRFASRMKLV 359 (359)
T ss_dssp EEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred EEEeCCchhhHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999987
No 23
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=100.00 E-value=2.8e-82 Score=700.49 Aligned_cols=314 Identities=34% Similarity=0.482 Sum_probs=256.1
Q ss_pred CCCEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEE-EecCC--------CCceeEeceeeCCCCChHHHHHh-hHHHHHH
Q 002847 8 AGNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLL-KLADN--------KSKNYSFDKVFHPGSSQDEVFSE-VEPVIKS 77 (874)
Q Consensus 8 kgnIrV~VRIRPl~~~E~~~~~~~vI~~d~~~v~l-~~~~~--------~~k~F~FD~VF~~~asQeeVF~~-V~PlV~s 77 (874)
+++|+|+|||||++..|.......++.+.+...++ ..... ..+.|.||+||+++++|++||+. ++|+|++
T Consensus 50 ~~~I~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~sQ~~Vy~~~~~plv~~ 129 (387)
T 2heh_A 50 EHRICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQT 129 (387)
T ss_dssp CCSEEEEEEECCCCHHHHHTTCCBCEECCBSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHHHH
T ss_pred CCCeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCCccccccccccccEEeeeEEEecCCCceeehhhhHHHHHHH
Confidence 78999999999999988655555566665544333 21111 23689999999999999999998 6999999
Q ss_pred hhcCCCeeEEEeccCCCCcceeccCC------CCCCCcHHHHHHHHHHHHHh---cCCeeEEEEEEEEEecceeecccCC
Q 002847 78 VLDGYNACIFAYGQTGTGKSFTMEGT------PDSPGIVPRAIEAIFKQAME---SNHAFRISFSMLEIYLGSLKDLLVT 148 (874)
Q Consensus 78 vLdGyN~TIfAYGQTGSGKTyTM~Gs------~e~~GIIPRaledLF~~i~e---~~~~f~VsVS~lEIYNEkV~DLL~~ 148 (874)
+|+|||+||||||||||||||||+|+ ..++|||||++++||..+.. ....|.|++||+|||||+|+|||++
T Consensus 130 ~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipr~~~~lF~~~~~~~~~~~~~~V~vS~~EIYnE~v~DLL~~ 209 (387)
T 2heh_A 130 IFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLNK 209 (387)
T ss_dssp HHTTCEEEEEEESCTTSSHHHHHC-----------CCHHHHHHHHHHHHHTSHHHHTTTCEEEEEEEEEETTEEEETTTT
T ss_pred HhcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCceehhhHHHHHHHhhcccccCceEEEEEEEEEecCCeEEECCCC
Confidence 99999999999999999999999996 35689999999999998853 3568999999999999999999975
Q ss_pred CCCCCCCCCCCcceeeecCCCcEEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEecCCcc
Q 002847 149 QPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPER 228 (874)
Q Consensus 149 ~~~~~~~~~~~~L~I~ed~~ggv~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~d~~e~ 228 (874)
. ..+.|++++.++++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|++.
T Consensus 210 ~---------~~l~i~ed~~~~v~v~gl~~~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~----- 275 (387)
T 2heh_A 210 K---------AKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAK----- 275 (387)
T ss_dssp T---------EECEEEECTTCCEEEETCCCEEESSHHHHHHHHHHHHHHC---------CGGGSEEEEEEEEESS-----
T ss_pred C---------ccceEEEcCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhCCcccCcCcCCcccceEEEEEEEEEC-----
Confidence 3 24889999999999999999999999999999999999999999999999999999999999764
Q ss_pred ccccceeEEEeccCcccccccc-ccchhhHHHHHhhhhHHHHHHHHHHHhcCCCCccCCCCccccccccc-cCCCceeeE
Q 002847 229 RREKNKIWLVDLGGSERVLKTK-ARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVLKDS-LGEDSKTLM 306 (874)
Q Consensus 229 ~~~~SkL~LVDLAGSER~~kt~-a~G~rlkEg~~INkSLsALg~VI~ALs~k~~hIPYRDSKLTrLLqDS-LGGNSKT~m 306 (874)
....|+|+|||||||||..+++ +.+.+++|+.+||+||++||+||.||+.++.||||||||||+||||+ |||||+|+|
T Consensus 276 ~~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hvPYRdSKLTrlLqdsllGgnskT~m 355 (387)
T 2heh_A 276 GRMHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCM 355 (387)
T ss_dssp SSEEEEEEEEECCCCC---------------CHHHHHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTGGGGSSTTEEEEE
T ss_pred CeeeeEEEEEECCCCccccccccccccchhhHHHHhHHHHHHHHHHHHHhcCCCCCCccccHHHHHHhhhccCCCCeEEE
Confidence 2367999999999999998876 46788899999999999999999999999999999999999999999 699999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHhhcccc
Q 002847 307 LVHVSPKEDDLCETICSLNFATRVKSVHL 335 (874)
Q Consensus 307 Ia~ISPs~~~~eETLsTLrFAsRAK~Ik~ 335 (874)
||||||+..+++||++||+||+|||+|+.
T Consensus 356 Ia~isP~~~~~~ETlsTLrfA~rak~I~~ 384 (387)
T 2heh_A 356 IATISPGISSCEYTLNTLRYADRVKELSP 384 (387)
T ss_dssp EEEECCBGGGHHHHHHHHHHHHHHCC---
T ss_pred EEEeCCccchHHHHHHHHHHHHHhccCcC
Confidence 99999999999999999999999999974
No 24
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=100.00 E-value=8e-82 Score=691.38 Aligned_cols=320 Identities=37% Similarity=0.559 Sum_probs=256.7
Q ss_pred ccCCCCEEEEEEeCCCCCCcCCCCCCcEEEeC--CCceEEEecC----------CCCceeEeceeeCCCCChHHHHHh-h
Q 002847 5 SAIAGNIRVFCRIRPISMGENFGRLRPVIAKD--SSNVLLKLAD----------NKSKNYSFDKVFHPGSSQDEVFSE-V 71 (874)
Q Consensus 5 ~~~kgnIrV~VRIRPl~~~E~~~~~~~vI~~d--~~~v~l~~~~----------~~~k~F~FD~VF~~~asQeeVF~~-V 71 (874)
.+++|||||||||||+...+. .++..+ ...+.+.... ...+.|.||+||+ +++|++||+. +
T Consensus 19 ~~~~g~IrV~vRvRP~~~~~~-----~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~F~fD~Vf~-~~sQ~~Vy~~~~ 92 (358)
T 2nr8_A 19 SGTRKKVHAFVRVKPTDDFAH-----EMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVA 92 (358)
T ss_dssp ----CCEEEEEEECCCSSCCT-----TTEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHT
T ss_pred CCCCCCeEEEEEcCCCCCCcc-----ceeEECCCCCEEEEecCCccccccccCCCcceEEECCeecC-CcCHHHHHHHHH
Confidence 478999999999999876432 123332 2233332221 2246799999995 8999999998 5
Q ss_pred HHHHHHhhcCCCeeEEEeccCCCCcceeccCCCCC---CCcHHHHHHHHHHHHHhc-CCeeEEEEEEEEEecceeecccC
Q 002847 72 EPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDS---PGIVPRAIEAIFKQAMES-NHAFRISFSMLEIYLGSLKDLLV 147 (874)
Q Consensus 72 ~PlV~svLdGyN~TIfAYGQTGSGKTyTM~Gs~e~---~GIIPRaledLF~~i~e~-~~~f~VsVS~lEIYNEkV~DLL~ 147 (874)
+|+|+++|+|||+||||||||||||||||+|++++ +|||||++++||+.+.+. ...|.|++||+|||||+|+|||+
T Consensus 93 ~~lv~~~l~G~N~tIfAYGqTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~ 172 (358)
T 2nr8_A 93 KDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLS 172 (358)
T ss_dssp HHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCTTSCEEEEEEEEEEETTEEEETTS
T ss_pred HHHHHHHhCCCceEEEEECCCCCCCceEecccccccccCCcHHHHHHHHHHHHhhcCCceEEEEEEEEEEeCCeeeECcC
Confidence 89999999999999999999999999999998765 899999999999998754 56899999999999999999998
Q ss_pred CCCCCCCCCCCCcceeeecCCCcEEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEecC--
Q 002847 148 TQPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDA-- 225 (874)
Q Consensus 148 ~~~~~~~~~~~~~L~I~ed~~ggv~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~d~-- 225 (874)
+.+... +....+.+++++ .|++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|++.+.
T Consensus 173 ~~~~~~--~~~~~l~i~e~~-~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~ 249 (358)
T 2nr8_A 173 TLPYVG--PSVTPMTIVENP-QGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTL 249 (358)
T ss_dssp SSTTSC--TTTSCCEEEEET-TEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC----
T ss_pred CccccC--ccCCceEEEECC-CceEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcCeEEEEEEEEEEeccC
Confidence 754321 233568899998 679999999999999999999999999999999999999999999999999987543
Q ss_pred CccccccceeEEEeccCccccccccccchhhHHHHHhhhhHHHHHHHHHHHhcC-CCCccCCCCccccccccccCCCcee
Q 002847 226 PERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRR-KRHVPYRNSKLTQVLKDSLGEDSKT 304 (874)
Q Consensus 226 ~e~~~~~SkL~LVDLAGSER~~kt~a~G~rlkEg~~INkSLsALg~VI~ALs~k-~~hIPYRDSKLTrLLqDSLGGNSKT 304 (874)
.......|+|+|||||||||+.++++.|.+++|+.+||+||++||+||.||+.+ +.||||||||||+||||+|||||+|
T Consensus 250 ~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hiPyRdSkLT~LLqdsLgGnskt 329 (358)
T 2nr8_A 250 SEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNM 329 (358)
T ss_dssp ---CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSSEE
T ss_pred CCCCEEEEEEEEEECCCCCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCCeE
Confidence 233445799999999999999999999999999999999999999999999875 5799999999999999999999999
Q ss_pred eEEEecCCCCCCHHHHHHHHHHHHHhhcc
Q 002847 305 LMLVHVSPKEDDLCETICSLNFATRVKSV 333 (874)
Q Consensus 305 ~mIa~ISPs~~~~eETLsTLrFAsRAK~I 333 (874)
+||+||||+..+++||++||+||+|||+|
T Consensus 330 ~mIa~isP~~~~~~ETlsTLrfA~Rak~I 358 (358)
T 2nr8_A 330 VLVTNIYGEAAQLEETLSSLRFASRMKLV 358 (358)
T ss_dssp EEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred EEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999986
No 25
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=100.00 E-value=7.4e-82 Score=692.11 Aligned_cols=316 Identities=30% Similarity=0.451 Sum_probs=270.2
Q ss_pred CEEEEEEeCCCCCCcCCCCCCcEEEeCCCc-eEEEecC--------CCCceeEeceeeCCCCChHHHHHh-hHHHHHHhh
Q 002847 10 NIRVFCRIRPISMGENFGRLRPVIAKDSSN-VLLKLAD--------NKSKNYSFDKVFHPGSSQDEVFSE-VEPVIKSVL 79 (874)
Q Consensus 10 nIrV~VRIRPl~~~E~~~~~~~vI~~d~~~-v~l~~~~--------~~~k~F~FD~VF~~~asQeeVF~~-V~PlV~svL 79 (874)
||||+|||||++..|.......++.+.++. +.+.... ...+.|.||+||+++++|++||+. ++|+|++++
T Consensus 1 ~IrV~vRvRP~~~~E~~~~~~~~v~~~~~~~i~i~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~~ 80 (360)
T 1ry6_A 1 MIKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDNFTVYENTIKPLIIDLY 80 (360)
T ss_dssp CEEEEEEECCCCHHHHHTTCCBCEEEEETTEEEEEEEEEETTTEEEEEEEEEECSEEECTTCCHHHHHHHHTHHHHHHHH
T ss_pred CeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCccccccccccccceEEeeeEecCCCCHHHHHHHHhhhhhhhhc
Confidence 799999999999988654444555554443 3332211 124689999999999999999998 799999999
Q ss_pred c-CCCeeEEEeccCCCCcceeccCCC-----CCCCcHHHHHHHHHHHHHh--cCCeeEEEEEEEEEecceeecccCCCCC
Q 002847 80 D-GYNACIFAYGQTGTGKSFTMEGTP-----DSPGIVPRAIEAIFKQAME--SNHAFRISFSMLEIYLGSLKDLLVTQPT 151 (874)
Q Consensus 80 d-GyN~TIfAYGQTGSGKTyTM~Gs~-----e~~GIIPRaledLF~~i~e--~~~~f~VsVS~lEIYNEkV~DLL~~~~~ 151 (874)
+ |||+||||||||||||||||+|+. +++|||||++++||+.+.. ....|.|++||+|||||+|+|||.+..
T Consensus 81 ~~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~- 159 (360)
T 1ry6_A 81 ENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRK- 159 (360)
T ss_dssp HHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHHHHHHHHHCSSSCEEEEEEEEEEETTEEEESCCC---
T ss_pred cCCceeEEEeeCCCCCCCCEEEecCCCCCCccCCCcHHHHHHHHHHHHHhhccCCceEEEEEEEEeeCCeeEEcccCCc-
Confidence 5 999999999999999999999974 6799999999999998864 456799999999999999999997542
Q ss_pred CCCCCCCCcceeeecCCCcEEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEecCCccccc
Q 002847 152 KATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPERRRE 231 (874)
Q Consensus 152 ~~~~~~~~~L~I~ed~~ggv~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~d~~e~~~~ 231 (874)
.+.+++++.++++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|++.+. ...
T Consensus 160 --------~~~~~e~~~~~~~v~gl~~~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~---~~~ 228 (360)
T 1ry6_A 160 --------MVAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDINK---NTS 228 (360)
T ss_dssp -----------------CCBCGGGSCCEEECSHHHHHHHHHHHHHHHHHCTTCCTTGGGGSEEEEEEEEEETTT---TEE
T ss_pred --------cceeeEcCCCCEEEcCcEEEEeCCHHHHHHHHHHHhhhhhcccccccCCCccceEEEEEEEEeccC---Ccc
Confidence 256788999999999999999999999999999999999999999999999999999999987542 345
Q ss_pred cceeEEEeccCccccccccccc-hhhHHHHHhhhhHHHHHHHHHHHhcCCCCccCCCCccccccccccCCCceeeEEEec
Q 002847 232 KNKIWLVDLGGSERVLKTKARG-RRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVLKDSLGEDSKTLMLVHV 310 (874)
Q Consensus 232 ~SkL~LVDLAGSER~~kt~a~G-~rlkEg~~INkSLsALg~VI~ALs~k~~hIPYRDSKLTrLLqDSLGGNSKT~mIa~I 310 (874)
.|+|+|||||||||..++++.| .+++|+.+||+||++||+||.||+.++.|||||||||||||||+|||||+|+||+||
T Consensus 229 ~skL~lVDLAGSEr~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~i 308 (360)
T 1ry6_A 229 LGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDSELTKVLRDIFVGKSKSIMIANI 308 (360)
T ss_dssp EEEEEEEECCCTTGGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSCCGGGCHHHHHTGGGGSSSCEEEEEEEE
T ss_pred eeEEEEEECCCCccccccccccccchHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCHHHHHHHHHhCCCCeEEEEEEe
Confidence 7999999999999999998876 578999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhhccccCc
Q 002847 311 SPKEDDLCETICSLNFATRVKSVHLGH 337 (874)
Q Consensus 311 SPs~~~~eETLsTLrFAsRAK~Ik~~~ 337 (874)
||+..+++||++||+||+|||+|++.+
T Consensus 309 sP~~~~~~ETlsTLrfA~rak~i~n~~ 335 (360)
T 1ry6_A 309 SPTISCCEQTLNTLRYSSRVKNKGNSK 335 (360)
T ss_dssp CCBGGGHHHHHHHHHHHHHHCC-----
T ss_pred CCCcccHHHHHHHHHHHHHHhhcccCc
Confidence 999999999999999999999998644
No 26
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=100.00 E-value=9.2e-82 Score=700.54 Aligned_cols=316 Identities=34% Similarity=0.478 Sum_probs=259.1
Q ss_pred CCCEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEE-EecCC--------CCceeEeceeeCCCCChHHHHHh-hHHHHHH
Q 002847 8 AGNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLL-KLADN--------KSKNYSFDKVFHPGSSQDEVFSE-VEPVIKS 77 (874)
Q Consensus 8 kgnIrV~VRIRPl~~~E~~~~~~~vI~~d~~~v~l-~~~~~--------~~k~F~FD~VF~~~asQeeVF~~-V~PlV~s 77 (874)
.++|+|+|||||++..|.......++.+.+...++ ..... ..+.|.||+||+++++|++||+. ++|+|++
T Consensus 70 ~~~I~V~vRvRPl~~~E~~~~~~~~v~~~~~~~v~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~tQ~~Vy~~~~~plV~~ 149 (410)
T 1v8k_A 70 EHRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQT 149 (410)
T ss_dssp CCCEEEEEEECCCCHHHHHTTCCBCEECCSSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHHHH
T ss_pred CCCeEEEEEeCCCChhHhhcCCccEEEECCCCEEEEecCcccccccccccceEEeeeEEEecCCChhhhhHHHHHHHHHH
Confidence 78999999999999988655555566665544433 21111 23689999999999999999998 6999999
Q ss_pred hhcCCCeeEEEeccCCCCcceeccCCC------CCCCcHHHHHHHHHHHHHh---cCCeeEEEEEEEEEecceeecccCC
Q 002847 78 VLDGYNACIFAYGQTGTGKSFTMEGTP------DSPGIVPRAIEAIFKQAME---SNHAFRISFSMLEIYLGSLKDLLVT 148 (874)
Q Consensus 78 vLdGyN~TIfAYGQTGSGKTyTM~Gs~------e~~GIIPRaledLF~~i~e---~~~~f~VsVS~lEIYNEkV~DLL~~ 148 (874)
+|+|||+||||||||||||||||+|+. .++|||||++++||..+.. ....|.|+|||+|||||+|+|||++
T Consensus 150 ~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipra~~~lF~~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~ 229 (410)
T 1v8k_A 150 IFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNK 229 (410)
T ss_dssp HHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTSHHHHTTCCEEEEEEEEEETTEEEETTTT
T ss_pred HhcCCceeEEeecCCCCCCCeEeecCCCCCCccccCcchhhhHHHHHHHHhhhcccCccEEEEEEEEEeeCCEEEECCCC
Confidence 999999999999999999999999963 4689999999999998853 3568999999999999999999975
Q ss_pred CCCCCCCCCCCcceeeecCCCcEEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEecCCcc
Q 002847 149 QPTKATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPER 228 (874)
Q Consensus 149 ~~~~~~~~~~~~L~I~ed~~ggv~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~d~~e~ 228 (874)
. ..+.|++++.++++|.||+++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|.+..
T Consensus 230 ~---------~~l~i~ed~~~~v~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~---- 296 (410)
T 1v8k_A 230 K---------AKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKG---- 296 (410)
T ss_dssp T---------EEEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC--------CCCSSEEEEEEEEESSS----
T ss_pred C---------CCceEEECCCCCeEecCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCCCCceEEEEEEEEeCC----
Confidence 3 248999999999999999999999999999999999999999999999999999999999997642
Q ss_pred ccccceeEEEeccCcccccccc-ccchhhHHHHHhhhhHHHHHHHHHHHhcCCCCccCCCCccccccccc-cCCCceeeE
Q 002847 229 RREKNKIWLVDLGGSERVLKTK-ARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVLKDS-LGEDSKTLM 306 (874)
Q Consensus 229 ~~~~SkL~LVDLAGSER~~kt~-a~G~rlkEg~~INkSLsALg~VI~ALs~k~~hIPYRDSKLTrLLqDS-LGGNSKT~m 306 (874)
...|+|+|||||||||..+++ +.+.+++|+.+||+||++||+||.||+.++.||||||||||+||||+ |||||+|+|
T Consensus 297 -~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hIPYRdSKLTrLLqdsllGgnskT~m 375 (410)
T 1v8k_A 297 -RLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCM 375 (410)
T ss_dssp -SEEEEEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC------CCCCHHHHHTTHHHHSSSEEEEE
T ss_pred -cceeEEEEEECCCccccccccccccchhHHHHHHhHHHHHHHHHHHHHhcCCCCCCcccchhHHHHhhcccCCCceEEE
Confidence 367999999999999998876 46788889999999999999999999999999999999999999999 699999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHhhccccCc
Q 002847 307 LVHVSPKEDDLCETICSLNFATRVKSVHLGH 337 (874)
Q Consensus 307 Ia~ISPs~~~~eETLsTLrFAsRAK~Ik~~~ 337 (874)
||||||+..+++||++||+||+|||+|.-.+
T Consensus 376 Ia~iSP~~~~~~ETlsTLrfA~rak~i~~~~ 406 (410)
T 1v8k_A 376 IAMISPGISSCEYTLNTLRYADRVKELSHHH 406 (410)
T ss_dssp EEEECCBGGGHHHHHHHHHHHHHHHTTC---
T ss_pred EEEeCCccccHHHHHHHHHHHHHhccCCCCC
Confidence 9999999999999999999999999997543
No 27
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=100.00 E-value=5.8e-80 Score=673.52 Aligned_cols=305 Identities=32% Similarity=0.493 Sum_probs=241.7
Q ss_pred cCCCCEEEEEEeCCCCCCcCCCCCCcEEEeCC---CceEEEecCCCCceeEeceeeCCCCChHHHHHh-hHHHHHHhhcC
Q 002847 6 AIAGNIRVFCRIRPISMGENFGRLRPVIAKDS---SNVLLKLADNKSKNYSFDKVFHPGSSQDEVFSE-VEPVIKSVLDG 81 (874)
Q Consensus 6 ~~kgnIrV~VRIRPl~~~E~~~~~~~vI~~d~---~~v~l~~~~~~~k~F~FD~VF~~~asQeeVF~~-V~PlV~svLdG 81 (874)
+..++|||+|||||+...|... ...++.... ...+. . ..+.|.||+||+++++|++||+. ++|+|+++|+|
T Consensus 19 ~~~~~VrV~vRvRP~~~~e~~~-~~~~v~~~~~~~~~~~~-~---~~~~F~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G 93 (344)
T 3dc4_A 19 AKLSAVRIAVREAPYRQFLGRR-EPSVVQFPPWSDGKSLI-V---DQNEFHFDHAFPATISQDEMYQALILPLVDKLLEG 93 (344)
T ss_dssp CCCSEEEEEEEECCCC--------CCSEECCSSSCSSEEE-E---TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCcccccC-CceEEEecCCCCCceEE-e---cCcEEEcceEECCCCCHHHHHHhhccchhhHhhCC
Confidence 4568999999999998876432 233444432 22222 1 35789999999999999999998 69999999999
Q ss_pred CCeeEEEeccCCCCcceeccCCC------CCCCcHHHHHHHHHHHHHhc----CCeeEEEEEEEEEecceeecccCCCCC
Q 002847 82 YNACIFAYGQTGTGKSFTMEGTP------DSPGIVPRAIEAIFKQAMES----NHAFRISFSMLEIYLGSLKDLLVTQPT 151 (874)
Q Consensus 82 yN~TIfAYGQTGSGKTyTM~Gs~------e~~GIIPRaledLF~~i~e~----~~~f~VsVS~lEIYNEkV~DLL~~~~~ 151 (874)
||+||||||||||||||||+|++ +++|||||++++||+.+... ...|.|++||+|||||+|+|||++...
T Consensus 94 ~N~tifAYGQTGSGKTyTM~g~~~~~~~~~~~GIipra~~~LF~~i~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~ 173 (344)
T 3dc4_A 94 FQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPH 173 (344)
T ss_dssp CCEEEEEESSTTSSHHHHHTCSCGGGSCGGGCCHHHHHHHHHHHHHHHSSSSCSSCCEEEEEEEEEESSCEEETTSSCTT
T ss_pred CceEEEEecCCCCCCCeEEcCCCCCCCCcccCCcHHHHHHHHHHHHHhhhhccccceEEEEEEEEEeCCeeEEccCCCCC
Confidence 99999999999999999999874 56899999999999998643 246999999999999999999976542
Q ss_pred CCCCCCCCcceeeecCCCcEEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEecCCccccc
Q 002847 152 KATDPLPPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPERRRE 231 (874)
Q Consensus 152 ~~~~~~~~~L~I~ed~~ggv~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~d~~e~~~~ 231 (874)
.. .....+.+++++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|++. ..
T Consensus 174 ~~--------------~~~~~~~~~~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~------~~ 233 (344)
T 3dc4_A 174 MP--------------MVAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSK------TH 233 (344)
T ss_dssp SB--------------CCSSTTTCSCCEECSSHHHHHHHHHHHHHTCC----------CCEEEEEEEEEECS------SC
T ss_pred Cc--------------cccccccCceecccCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEec------Cc
Confidence 11 01122458899999999999999999999999999999999999999999999642 35
Q ss_pred cceeEEEeccCccccccccccchhhHHHHHhhhhHHHHHHHHHHHhcCCCCccCCCCccccccccccCCCceeeEEEecC
Q 002847 232 KNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVS 311 (874)
Q Consensus 232 ~SkL~LVDLAGSER~~kt~a~G~rlkEg~~INkSLsALg~VI~ALs~k~~hIPYRDSKLTrLLqDSLGGNSKT~mIa~IS 311 (874)
.|+|+|||||||||+.++++.|.+++|+.+||+||++||+||.||+.++.||||||||||+||||+|||||+|+||+|||
T Consensus 234 ~skl~lVDLAGSEr~~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~~~hiPyRdSkLT~lLqdsLgGnskt~mIa~is 313 (344)
T 3dc4_A 234 HSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACIS 313 (344)
T ss_dssp EEEEEEEECCCCCCC-------------CCSCCHHHHHHHHHHHHHTTCSSCCGGGSHHHHHTTTTSSTTCEEEEEEEEC
T ss_pred EEEEEEEECCCCccccccccccchhHHHHHHhHhHHHHHHHHHHHhccCCcCCccccHHHHHHHHHhCCCCEEEEEEEeC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhcccc
Q 002847 312 PKEDDLCETICSLNFATRVKSVHL 335 (874)
Q Consensus 312 Ps~~~~eETLsTLrFAsRAK~Ik~ 335 (874)
|+..+++||++||+||+||+....
T Consensus 314 P~~~~~~ETlsTL~fA~ra~~~~~ 337 (344)
T 3dc4_A 314 PHQCDLSETLSTLRFGTSAKAAAL 337 (344)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHHTT
T ss_pred CchhhHHHHHHHHHHHHHHhhcCC
Confidence 999999999999999999998864
No 28
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=100.00 E-value=2.6e-76 Score=695.75 Aligned_cols=325 Identities=39% Similarity=0.607 Sum_probs=255.9
Q ss_pred cccCCCCEEEEEEeC----C-CCCCcCCCCCCcEEEeC-------CCceEEEec---CCCCceeEeceeeCCCCChHHHH
Q 002847 4 VSAIAGNIRVFCRIR----P-ISMGENFGRLRPVIAKD-------SSNVLLKLA---DNKSKNYSFDKVFHPGSSQDEVF 68 (874)
Q Consensus 4 v~~~kgnIrV~VRIR----P-l~~~E~~~~~~~vI~~d-------~~~v~l~~~---~~~~k~F~FD~VF~~~asQeeVF 68 (874)
+..+.+++||||||| | +...+..+...+.+... .+.+++... ....+.|.||+||+++++|++||
T Consensus 369 ~~~il~~~rV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~ 448 (715)
T 4h1g_A 369 AAALKGNIRVFCRIRNVSSSSSSSSSSSSEDIIQYEAPQDINDESKQELVITRNINNNFSNLRFLFDKIFEREQSNDLVF 448 (715)
T ss_dssp HSSSSCSEEEEEEECCCC-------------BCEEECCC-------CEEEEEEEETTEEEEEEEECSEEECSSCCHHHHG
T ss_pred HHHHHhcCeEEEEEeccccccccccccccccceeccCCCCCCCCCCCeEEEcCCCCCCCCCeEEEeceEeCCCCCHHHHH
Confidence 456678999999999 4 43333333333333321 122333221 22357899999999999999999
Q ss_pred HhhHHHHHHhhcCCCeeEEEeccCCCCcceeccCCCCCCCcHHHHHHHHHHHHHh---cCCeeEEEEEEEEEecceeecc
Q 002847 69 SEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAME---SNHAFRISFSMLEIYLGSLKDL 145 (874)
Q Consensus 69 ~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM~Gs~e~~GIIPRaledLF~~i~e---~~~~f~VsVS~lEIYNEkV~DL 145 (874)
+.|.|+|+++|+|||+||||||||||||||||+|. ++|||||++++||+.+.+ .+..|.|+|||+|||||+|+||
T Consensus 449 ~~~~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~--~~Giipr~~~~lf~~~~~~~~~~~~~~v~~s~~Eiyne~i~DL 526 (715)
T 4h1g_A 449 EELSQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHP--TNGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDL 526 (715)
T ss_dssp GGTHHHHHHHHTTCCEEEEEESSTTSSHHHHHHCT--TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEES
T ss_pred HHHHHHHHHHhCCceEEEEccCCCCCchhhccCCC--CCCcHHHHHHHHHHHHHHhhcCCceEEEEEEEEEEECCEEEEC
Confidence 99999999999999999999999999999999994 579999999999998853 4568999999999999999999
Q ss_pred cCCCCCCCCCCCCCcceeee-cCCCcEEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEec
Q 002847 146 LVTQPTKATDPLPPCLSIHT-EPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFD 224 (874)
Q Consensus 146 L~~~~~~~~~~~~~~L~I~e-d~~ggv~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~d 224 (874)
|.+.... ...+.+++ +..++++|.||+++.|.|++|++++|..|.++|++++|.+|..|||||+||+|+|++.+
T Consensus 527 l~~~~~~-----~~~~~~~~~~~~g~~~v~~l~~~~v~~~~~~~~~~~~g~~~r~~~~t~~n~~ssRSH~i~~i~~~~~~ 601 (715)
T 4h1g_A 527 LNPKIDP-----NTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGYN 601 (715)
T ss_dssp SSCCCCT-----TCCCCEEEETTTTEEEETTCCCEECSCHHHHHHHHHHHHCC----------CGGGSEEEEEEEEEEEE
T ss_pred CCCCCCC-----CCcceeEEecCCCCEEEeCCEEEEcCCHHHHHHHHHHHHhccCcccccccCccccccEEEEEEEEEEe
Confidence 9865322 12345554 44566999999999999999999999999999999999999999999999999999888
Q ss_pred CCccccccceeEEEeccCccccccccccchhhHHHHHhhhhHHHHHHHHHHHhc-CCCCccCCCCccccccccccCCCce
Q 002847 225 APERRREKNKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQR-RKRHVPYRNSKLTQVLKDSLGEDSK 303 (874)
Q Consensus 225 ~~e~~~~~SkL~LVDLAGSER~~kt~a~G~rlkEg~~INkSLsALg~VI~ALs~-k~~hIPYRDSKLTrLLqDSLGGNSK 303 (874)
........|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+. +..|||||||||||||||+|||||+
T Consensus 602 ~~~~~~~~~~l~lvDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~al~~~~~~~vpyR~SkLT~lL~~slggn~~ 681 (715)
T 4h1g_A 602 SLTKESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRNSKLTYLLKHSLGGNSK 681 (715)
T ss_dssp TTTCCEEEEEEEEEECCCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHCSCCCCCGGGCHHHHHTGGGTSTTCE
T ss_pred cCCCCEeEEEEEEEeCCCcccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCccCHHHHHHHhhcCCCce
Confidence 777777889999999999999999999999999999999999999999999975 4589999999999999999999999
Q ss_pred eeEEEecCCCCCCHHHHHHHHHHHHHhhcccc
Q 002847 304 TLMLVHVSPKEDDLCETICSLNFATRVKSVHL 335 (874)
Q Consensus 304 T~mIa~ISPs~~~~eETLsTLrFAsRAK~Ik~ 335 (874)
|+|||||||+..+++||++||+||+|||+|++
T Consensus 682 t~~i~~isp~~~~~~et~~tL~fa~r~~~i~~ 713 (715)
T 4h1g_A 682 TLMFVNISPLTKDLNETINSLRFATKVNNTRI 713 (715)
T ss_dssp EEEEEEECCBGGGHHHHHHHHHHHHHHCC---
T ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcccee
Confidence 99999999999999999999999999999974
No 29
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.93 E-value=1.2e-26 Score=218.62 Aligned_cols=115 Identities=36% Similarity=0.506 Sum_probs=96.2
Q ss_pred hhhHHHHHHHHHHHhcC-CCCccCCCCccccccccccCCCceeeEEEecCCCCCCHHHHHHHHHHHHHhhccccCcCCch
Q 002847 263 NLSLSALGDVIYALQRR-KRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHLGHEDSN 341 (874)
Q Consensus 263 NkSLsALg~VI~ALs~k-~~hIPYRDSKLTrLLqDSLGGNSKT~mIa~ISPs~~~~eETLsTLrFAsRAK~Ik~~~~~~~ 341 (874)
|+||++||+||.+|+.+ +.||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+||+.|++.+....
T Consensus 1 N~SL~~Lg~vi~aL~~~~~~hvPyRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~~n~ 80 (117)
T 3kin_B 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNL 80 (117)
T ss_dssp CCHHHHHHHHHHHHHHSCCSSCCGGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEECCCB
T ss_pred CCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCceecC
Confidence 89999999999999987 47999999999999999999999999999999999999999999999999999987654433
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 002847 342 EARDQKEVSMKNLQQKMKKIEEERLRVRGEIENLSEKLEALT 383 (874)
Q Consensus 342 ~~~~~k~~~~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~ 383 (874)
.. ..+++.+++++..+++..|+..|+.|+.+++.++
T Consensus 81 ~~------~~~~l~~~~~~e~~~~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 81 EL------TAEEWKKKYEKEKEKNKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp CC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22 1234445555566677778888888888877654
No 30
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=8.5e-27 Score=246.85 Aligned_cols=266 Identities=11% Similarity=0.136 Sum_probs=182.2
Q ss_pred cccccCCCCEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEEEecCCCCceeEeceeeCCCCChH--HHHHhhHHHHHHhh
Q 002847 2 LIVSAIAGNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADNKSKNYSFDKVFHPGSSQD--EVFSEVEPVIKSVL 79 (874)
Q Consensus 2 ~~v~~~kgnIrV~VRIRPl~~~E~~~~~~~vI~~d~~~v~l~~~~~~~k~F~FD~VF~~~asQe--eVF~~V~PlV~svL 79 (874)
+.+.+++|||||||||||...++ ...+...+..+.+ ....+.|.||+||++.+.|+ +||+++.++|+++|
T Consensus 17 NsI~ELKGnIRVFcrvrp~~~p~-----~~~v~y~~~~I~v---~~~~k~f~FDRVf~p~s~Qe~~~vf~E~~~~i~scL 88 (298)
T 2o0a_A 17 NSIIEQKGTMRCYAYVMEQNLPE-----NLLFDYENGVITQ---GLSEHVYKFNRVIPHLKVSEDKFFTQEYSVYHDMCL 88 (298)
T ss_dssp HHHHHHHTCCEEEEEECGGGSCT-----TEEEETTTTEEEE---TTTCCEEECSEEEETTTSCHHHHHHHTTHHHHHHHH
T ss_pred hHHHHhhCceEEEEEeccccCCc-----cceeecCccceee---cCCCceEEeeeEECccccccHHHHHHHHHHHHHHHH
Confidence 46788999999999999965221 1234444444322 22348999999999999999 99999999999999
Q ss_pred c-CCCeeEEEeccCCCCcceeccCCCCCCCcHHHHHHHHHHHHHh-cCCeeEEEEEEEEEe-cceeecccCCCCCCCCCC
Q 002847 80 D-GYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAME-SNHAFRISFSMLEIY-LGSLKDLLVTQPTKATDP 156 (874)
Q Consensus 80 d-GyN~TIfAYGQTGSGKTyTM~Gs~e~~GIIPRaledLF~~i~e-~~~~f~VsVS~lEIY-NEkV~DLL~~~~~~~~~~ 156 (874)
+ |||+||||||||||||| ||++..+|..... ....|.+++||+||| ||.++|||...+..
T Consensus 89 d~GyNvcIfSyGQTGsGKT-------------~ral~q~f~~~~~~~~~~Y~~tlq~veLy~Ne~~~DLL~~~~~~---- 151 (298)
T 2o0a_A 89 NQKKNFNLISLSTTPHGSL-------------RESLIKFLAEKDTIYQKQYVITLQFVFLSDDEFSQDMLLDYSHN---- 151 (298)
T ss_dssp HTTCCEEEEEECSSCCHHH-------------HHHHHHHHHSTTSHHHHHEEEEEEEEEEECC-CEEETTSCCC------
T ss_pred hCCCceEEEEECCCCCCcc-------------HHHHHHHHHHhhhhcccceEEEEEEEEEecCCchHHhcCCCCCC----
Confidence 9 99999999999999999 9999999986532 227899999999999 99999999744322
Q ss_pred CCCcceeeecCCCcEEecCcEEEEeCC-HHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEecCCcc---cccc
Q 002847 157 LPPCLSIHTEPKGGIEIDNLVTIQVND-FNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPER---RREK 232 (874)
Q Consensus 157 ~~~~L~I~ed~~ggv~V~gLtev~V~S-~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~d~~e~---~~~~ 232 (874)
..+.|+.+..+...|.|++.+.|.+ ++|+..++..+.. +..|. +.-.|+.+.+...|.... ....
T Consensus 152 --~k~eIk~~~~g~~iv~~s~~i~V~~~~edv~~~~~~~~~------~~~~~---~gi~i~k~~~~~~~~~~~~~~~~~~ 220 (298)
T 2o0a_A 152 --DKDSIKLKFEKHSISLDSKLVIIENGLEDLPLNFSCDEH------PNLPH---SGMGIIKVQFFPRDSKSDGNNDPVP 220 (298)
T ss_dssp ------CEEEECSSCEEEESCCEEESSGGGGSCTTTTCC----------------CEEEEEEEEEEESCC-------CCC
T ss_pred --CcceEEecCCCCEEecccEEEEccccHHHHHHHhhcccc------cccCC---CCceEEEEEEecCcccccccCCCCc
Confidence 1467888899999999999999999 9998887733222 11221 234566666655322111 1123
Q ss_pred ceeEEEeccCccccccccccchhhHHHHHhhhhHHHHHHHHHHHhcCCCCccCCCCccccccccccCCCceeeEEEecCC
Q 002847 233 NKIWLVDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSP 312 (874)
Q Consensus 233 SkL~LVDLAGSER~~kt~a~G~rlkEg~~INkSLsALg~VI~ALs~k~~hIPYRDSKLTrLLqDSLGGNSKT~mIa~ISP 312 (874)
--++|+.+.-.. +...|.+ ++..+ -+-.|+++-+|+..| -..|-++++++.-
T Consensus 221 ~d~yf~e~~~~~--------------------~~~~l~~---~~~~~----~~~~spi~~il~~ll-~~tks~~~~~l~~ 272 (298)
T 2o0a_A 221 VDFYFIELNNLK--------------------SIEQFDK---SIFKK----ESCETPIALVLKKLI-SDTKSFFLLNLND 272 (298)
T ss_dssp EEEEEEEECSHH--------------------HHHHHHH---HHHTC-----CCCSHHHHHHHHHH-HHSBCEEEEEECC
T ss_pred eEEEEEEeCCHH--------------------HHHHHHh---hcccc----cccCCcHHHHHHHHH-hcCcceEEEEecC
Confidence 357787766322 1222222 11111 244677777787666 4568899999986
Q ss_pred CCCCHHHHHHHHHHHHHhhcccc
Q 002847 313 KEDDLCETICSLNFATRVKSVHL 335 (874)
Q Consensus 313 s~~~~eETLsTLrFAsRAK~Ik~ 335 (874)
.... -.-|..++++..+.+
T Consensus 273 ~~~~----~~lL~~s~~i~~~~~ 291 (298)
T 2o0a_A 273 SKNV----NKLLTISEEVQTQLC 291 (298)
T ss_dssp GGGH----HHHHHHHHHHHHHTC
T ss_pred CCch----hHHHHHHHHhhcccC
Confidence 5432 347788888877764
No 31
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.92 E-value=2.6e-26 Score=210.85 Aligned_cols=81 Identities=43% Similarity=0.597 Sum_probs=76.2
Q ss_pred HHhhhhHHHHHHHHHHHhcC-CCCccCCCCccccccccccCCCceeeEEEecCCCCCCHHHHHHHHHHHHHhhccccCcC
Q 002847 260 KAINLSLSALGDVIYALQRR-KRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDLCETICSLNFATRVKSVHLGHE 338 (874)
Q Consensus 260 ~~INkSLsALg~VI~ALs~k-~~hIPYRDSKLTrLLqDSLGGNSKT~mIa~ISPs~~~~eETLsTLrFAsRAK~Ik~~~~ 338 (874)
.+||+||++||+||.+|+.+ ..||||||||||+||||+|||||+|+||+||||+..+++||++||+||+||+.|+..+.
T Consensus 2 ~~IN~SL~~Lg~vI~aL~~~~~~hvPyRdSkLT~lL~dsLgGnskt~mi~~vsp~~~~~~ETl~TL~fA~rak~i~~~~~ 81 (100)
T 2kin_B 2 KNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVS 81 (100)
T ss_dssp CBSSHHHHHHHHHHHHHHHTCCSSCCGGGCHHHHHTHHHHHSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEEEEC
T ss_pred CcchHHHHHHHHHHHHHHhcCCCCCCCccchHHHHHHHHhcCCCceeEEEEeCcccchHHHHHHHHHHHHHHHhccCcce
Confidence 57999999999999999987 68999999999999999999999999999999999999999999999999999997654
Q ss_pred Cc
Q 002847 339 DS 340 (874)
Q Consensus 339 ~~ 340 (874)
..
T Consensus 82 ~n 83 (100)
T 2kin_B 82 VN 83 (100)
T ss_dssp CE
T ss_pred ec
Confidence 43
No 32
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=94.81 E-value=0.065 Score=58.21 Aligned_cols=124 Identities=15% Similarity=0.177 Sum_probs=86.9
Q ss_pred ccccCCCCEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEEEecCCCCceeEeceeeCCCC--ChHHHHHhhHHHHHHhh-
Q 002847 3 IVSAIAGNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADNKSKNYSFDKVFHPGS--SQDEVFSEVEPVIKSVL- 79 (874)
Q Consensus 3 ~v~~~kgnIrV~VRIRPl~~~E~~~~~~~vI~~d~~~v~l~~~~~~~k~F~FD~VF~~~a--sQeeVF~~V~PlV~svL- 79 (874)
.+-+.+|.||+|+=+-+-..++. ..+...+..+ . ..+..+.|.|++|++... .+.-+|++.+..++-++
T Consensus 53 SIdElKG~IRcFAYi~~~~~p~~-----~~idY~~~~I--t-~~~~~~~y~FnRiIp~~~~~e~~~l~qE~q~y~DmcL~ 124 (333)
T 4etp_B 53 SIIEQKGTMRVYAYVMEQNLPEN-----LLFDYENGVI--T-QGLSEHVYKFNRVIPHLKVSEDCFFTQEYSVYHDMALN 124 (333)
T ss_dssp HHHHHHTCCEEEEEECCSSCCSS-----CEEETTTTEE--E-C--CCCEEECSEEEETTTCCHHHHHHHTTHHHHHHHHH
T ss_pred hHHHhcCcEEEEEEECcccCCcc-----EEEecccceE--e-ecCCcceEEEeeeechhhcchHHHHHHHHHHHHHHHHc
Confidence 46688999999999987444332 2233333332 2 223568999999998765 56667778999999999
Q ss_pred cCCCeeEEEeccCCCCcceeccCCCCCCCcHHHHHHHHHHHHHhc----CCeeEEEEEEEEEecce-eecccCCCC
Q 002847 80 DGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAMES----NHAFRISFSMLEIYLGS-LKDLLVTQP 150 (874)
Q Consensus 80 dGyN~TIfAYGQTGSGKTyTM~Gs~e~~GIIPRaledLF~~i~e~----~~~f~VsVS~lEIYNEk-V~DLL~~~~ 150 (874)
.+.|+.|+..|..-- +..-..|+..+... ...|.+.+.|+.+-++. ..|||.+..
T Consensus 125 ~~~NfslIsis~~~w----------------~~Lr~~lL~fi~~k~~~Y~~~y~i~lQ~V~Lse~~~S~DlL~~~~ 184 (333)
T 4etp_B 125 QKKNFNLISLSTTPH----------------GSLRESLIKFLAEKDTIYQKQYVITLQFVFLSDDEFSQDMLLDYS 184 (333)
T ss_dssp TTCCEEEEEEESSCC----------------CHHHHHHHHHHHSTTCHHHHHEEEEEEEEECCSSSCCEESSCC--
T ss_pred cCCCeeEEEecCCCc----------------HHHHHHHHHHHHhcccccccceEEEEEEEEEcCCCchhhhhcccc
Confidence 999999999985421 23445555556555 46789999998888776 799997754
No 33
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.15 E-value=0.0092 Score=57.50 Aligned_cols=51 Identities=16% Similarity=0.178 Sum_probs=38.9
Q ss_pred ceeEeceeeCCCCChHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 50 KNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 50 k~F~FD~VF~~~asQeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
+.++||.....+..|+++++.+..+++++--.....++-||++|+|||+.+
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHH
T ss_pred hhCccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHH
Confidence 456888866656678888888888887764333456788999999999875
No 34
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.04 E-value=0.031 Score=54.51 Aligned_cols=51 Identities=16% Similarity=0.210 Sum_probs=36.9
Q ss_pred ceeEeceeeCCCCChHHHHHhhHHHHHHhhcCCC-eeEEEeccCCCCcceec
Q 002847 50 KNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYN-ACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 50 k~F~FD~VF~~~asQeeVF~~V~PlV~svLdGyN-~TIfAYGQTGSGKTyTM 100 (874)
..++||.+...+..+..+++.+..++...-.+.. ..|+-||++|+|||+.+
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHH
Confidence 4567888666555677787777667666544432 67899999999999875
No 35
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=90.62 E-value=0.083 Score=56.35 Aligned_cols=51 Identities=20% Similarity=0.377 Sum_probs=35.6
Q ss_pred eeEeceeeCCCCChHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCcceecc
Q 002847 51 NYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 51 ~F~FD~VF~~~asQeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM~ 101 (874)
.++||.+......+..++..+..+++..-.+....|+-||++|+||||.+.
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHH
Confidence 467887554443556677666666666544445678899999999999864
No 36
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=83.47 E-value=0.32 Score=49.53 Aligned_cols=45 Identities=20% Similarity=0.296 Sum_probs=22.4
Q ss_pred eeEeceeeCCCCChHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 51 NYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 51 ~F~FD~VF~~~asQeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
.|+||.+.+.+ .....+...+..+.. .+..|+-||++|+|||+..
T Consensus 2 ~~~f~~~ig~~----~~~~~~~~~~~~~~~-~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 2 AEYKDNLLGEA----NSFLEVLEQVSHLAP-LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp --------CCC----HHHHHHHHHHHHHTT-SCSCEEEECCTTSCHHHHH
T ss_pred CcccccceeCC----HHHHHHHHHHHHHhC-CCCCEEEECCCCCcHHHHH
Confidence 37888877643 333333333344333 3467888999999999763
No 37
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=83.07 E-value=0.43 Score=46.62 Aligned_cols=45 Identities=13% Similarity=0.378 Sum_probs=28.7
Q ss_pred eEeceeeCCCCChHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 52 YSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 52 F~FD~VF~~~asQeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
++||.+.. ...++.++..+..++. .+....|+-||++|+|||+.+
T Consensus 25 ~~~~~~~~-~~~~~~~~~~l~~~~~---~~~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 25 ETFTSYYP-AAGNDELIGALKSAAS---GDGVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp CSTTTSCC---CCHHHHHHHHHHHH---TCSCSEEEEECSTTSSHHHHH
T ss_pred CChhhccC-CCCCHHHHHHHHHHHh---CCCCCeEEEECCCCCCHHHHH
Confidence 56776555 2334555555444433 335567899999999999865
No 38
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=82.58 E-value=0.6 Score=43.36 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=22.4
Q ss_pred hHHHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 71 VEPVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 71 V~PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
+..++..+..+....|+-||++|+|||+.+
T Consensus 31 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 31 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSCHHHHH
T ss_pred HHHHHHHHhcCCCCceEEECCCCCCHHHHH
Confidence 344455555566677899999999999875
No 39
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=81.30 E-value=0.61 Score=48.98 Aligned_cols=49 Identities=22% Similarity=0.485 Sum_probs=30.9
Q ss_pred ceeEeceeeCCCCChHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 50 KNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 50 k~F~FD~VF~~~asQeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
..|+||.+.. ...+...+..+..++..-- +....++-||++|+|||+.+
T Consensus 6 ~~~~f~~fv~-g~~~~~a~~~~~~~~~~~~-~~~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 6 PKYTLENFIV-GEGNRLAYEVVKEALENLG-SLYNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp TTCCSSSCCC-CTTTHHHHHHHHHHHHTTT-TSCSSEEEECSSSSSHHHHH
T ss_pred CCCCcccCCC-CCcHHHHHHHHHHHHhCcC-CCCCeEEEECCCCCcHHHHH
Confidence 3588988653 2344555555544444321 13346889999999999875
No 40
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=79.61 E-value=0.7 Score=43.12 Aligned_cols=30 Identities=17% Similarity=0.257 Sum_probs=22.2
Q ss_pred hHHHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 71 VEPVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 71 V~PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
+..+++.+..+....|+-||++|+|||+.+
T Consensus 31 ~~~l~~~l~~~~~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 31 IRRAIQILSRRTKNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp HHHHHHHHTSSSSCEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHhCCCCCceEEECCCCCCHHHHH
Confidence 344555555566778899999999999864
No 41
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=79.20 E-value=0.7 Score=47.27 Aligned_cols=47 Identities=13% Similarity=0.196 Sum_probs=27.9
Q ss_pred eceeeCCCCChHHHHHhhHHHHHHhh---cCCCeeEEEeccCCCCcceec
Q 002847 54 FDKVFHPGSSQDEVFSEVEPVIKSVL---DGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 54 FD~VF~~~asQeeVF~~V~PlV~svL---dGyN~TIfAYGQTGSGKTyTM 100 (874)
++.+++.....+.+......++..+- ......|+-||++|+|||+..
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALA 81 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHH
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHH
Confidence 34444433333344433222444443 566788999999999999864
No 42
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=78.94 E-value=0.79 Score=46.51 Aligned_cols=51 Identities=20% Similarity=0.275 Sum_probs=33.2
Q ss_pred ceeEeceeeCCCCChHHHHHhhHHH-----HHHhhcCCCeeEEEeccCCCCcceec
Q 002847 50 KNYSFDKVFHPGSSQDEVFSEVEPV-----IKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 50 k~F~FD~VF~~~asQeeVF~~V~Pl-----V~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
..+.|+.+.+.+...+.+...+..+ ...+-......|+-||++|+|||+.+
T Consensus 6 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 6 PNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHH
Confidence 4578899988877766666543321 11211223445899999999999864
No 43
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=77.60 E-value=0.93 Score=46.31 Aligned_cols=51 Identities=24% Similarity=0.298 Sum_probs=29.4
Q ss_pred ceeEeceeeCCCCChHHHHHhh-HHH-----HHHhhcCCCeeEEEeccCCCCcceec
Q 002847 50 KNYSFDKVFHPGSSQDEVFSEV-EPV-----IKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 50 k~F~FD~VF~~~asQeeVF~~V-~Pl-----V~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
..+.|+.+.+.+..-+.+...+ .++ ....--.....|+-||++|+|||+.+
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 3578888877543333333332 111 11111134456899999999999864
No 44
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=77.48 E-value=1.1 Score=47.48 Aligned_cols=46 Identities=22% Similarity=0.237 Sum_probs=33.6
Q ss_pred eeEeceeeCCCCChHHHHHhhHHHHHHhhcCCCe--eEEEeccCCCCcceec
Q 002847 51 NYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNA--CIFAYGQTGTGKSFTM 100 (874)
Q Consensus 51 ~F~FD~VF~~~asQeeVF~~V~PlV~svLdGyN~--TIfAYGQTGSGKTyTM 100 (874)
.+.||.+.+ |+.+...+..++..+-.|... .++-||++|+|||+..
T Consensus 40 ~~~~~~ivG----~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 40 RQASQGMVG----QLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp CSEETTEES----CHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHH
T ss_pred CcchhhccC----hHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHH
Confidence 456777665 456665666666666677654 8999999999999865
No 45
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=76.74 E-value=1.4 Score=45.50 Aligned_cols=20 Identities=25% Similarity=0.238 Sum_probs=16.2
Q ss_pred CCCeeEEEeccCCCCcceec
Q 002847 81 GYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 81 GyN~TIfAYGQTGSGKTyTM 100 (874)
.....|+-||++|+|||+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 44457999999999999864
No 46
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=76.38 E-value=0.92 Score=49.11 Aligned_cols=30 Identities=13% Similarity=0.045 Sum_probs=22.6
Q ss_pred hHHHHHHhh-cCCCeeEEEeccCCCCcceec
Q 002847 71 VEPVIKSVL-DGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 71 V~PlV~svL-dGyN~TIfAYGQTGSGKTyTM 100 (874)
+...+..++ .|...+|+-||++|+|||.++
T Consensus 32 i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 32 IFLPIYDSLMSSQNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp HHHHHHHHHHTTCCCEEEEECCCSHHHHHHH
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 444444444 677789999999999999874
No 47
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=74.55 E-value=0.79 Score=48.18 Aligned_cols=39 Identities=23% Similarity=0.379 Sum_probs=27.1
Q ss_pred CChHHHHHhhHHHHHHhhc-CCCeeEEEeccCCCCcceec
Q 002847 62 SSQDEVFSEVEPVIKSVLD-GYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 62 asQeeVF~~V~PlV~svLd-GyN~TIfAYGQTGSGKTyTM 100 (874)
..+++..+.+...+..++. +....++-||++|+|||+.+
T Consensus 22 ~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 22 PHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp TTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 3456666665555555543 44568999999999999865
No 48
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=74.52 E-value=1.4 Score=46.27 Aligned_cols=35 Identities=26% Similarity=0.425 Sum_probs=22.0
Q ss_pred HHHHh-hHHHHHHhhc--CCC--eeEEEeccCCCCcceec
Q 002847 66 EVFSE-VEPVIKSVLD--GYN--ACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 66 eVF~~-V~PlV~svLd--GyN--~TIfAYGQTGSGKTyTM 100 (874)
.+.+. +..++...+. |.. ..|+-||++|+|||+..
T Consensus 14 ~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 14 AFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp HHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 34343 3455555543 222 36788999999999853
No 49
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=74.26 E-value=1.3 Score=46.69 Aligned_cols=39 Identities=18% Similarity=0.347 Sum_probs=28.4
Q ss_pred CChHHHHHhhHHHHHHhhcCCC-e--eEEEeccCCCCcceec
Q 002847 62 SSQDEVFSEVEPVIKSVLDGYN-A--CIFAYGQTGTGKSFTM 100 (874)
Q Consensus 62 asQeeVF~~V~PlV~svLdGyN-~--TIfAYGQTGSGKTyTM 100 (874)
..+++..+.+...+..++.|.. . .++-||++|+|||+++
T Consensus 20 ~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 20 PHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTL 61 (389)
T ss_dssp TTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHH
Confidence 3456666666666777666643 4 6899999999999864
No 50
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=73.82 E-value=0.94 Score=43.09 Aligned_cols=42 Identities=29% Similarity=0.497 Sum_probs=25.2
Q ss_pred ceeEeceeeCCCCChHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 50 KNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 50 k~F~FD~VF~~~asQeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
..+.||.-+. . .+.+.+..+..+ .| ..++-||++|+|||+.+
T Consensus 12 ~~~~~~~f~~-g-~n~~~~~~l~~~-----~g--~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 12 DYPSFDKFLG-T-ENAELVYVLRHK-----HG--QFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCCCCCCCCS-C-CTHHHHHHCCCC-----CC--SEEEEESSSTTTTCHHH
T ss_pred CccchhhcCc-C-ccHHHHHHHHhc-----CC--CEEEEECCCCCCHHHHH
Confidence 4466666333 3 334444433222 33 45677999999999985
No 51
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=73.77 E-value=2 Score=42.93 Aligned_cols=44 Identities=23% Similarity=0.255 Sum_probs=27.5
Q ss_pred EeceeeCCCCChHHHHHhhHHHHHHhhc---------CCCeeEEEeccCCCCcceec
Q 002847 53 SFDKVFHPGSSQDEVFSEVEPVIKSVLD---------GYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 53 ~FD~VF~~~asQeeVF~~V~PlV~svLd---------GyN~TIfAYGQTGSGKTyTM 100 (874)
.|+.|.+. +++-+.+..++..+.. .....|+-||++|+|||+..
T Consensus 4 ~~~~i~G~----~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 4 SFKDVAGM----HEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CTTSSCSC----HHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHH
T ss_pred CHHHhCCH----HHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHH
Confidence 45665553 4454445545443221 34456899999999999864
No 52
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=73.53 E-value=0.93 Score=47.47 Aligned_cols=44 Identities=18% Similarity=0.398 Sum_probs=28.5
Q ss_pred ceeEeceeeCCCCChHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 50 KNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 50 k~F~FD~VF~~~asQeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
..|.|+.+++. +.+... +...++.+....|+-||++|+|||+..
T Consensus 19 ~~~~f~~i~G~----~~~~~~---l~~~~~~~~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 19 PVFPFSAIVGQ----EDMKLA---LLLTAVDPGIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp CCCCGGGSCSC----HHHHHH---HHHHHHCGGGCCEEEECCGGGCTTHHH
T ss_pred CCCCchhccCh----HHHHHH---HHHHhhCCCCceEEEECCCCccHHHHH
Confidence 45889988764 333322 223334444455999999999999864
No 53
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=73.19 E-value=1.3 Score=49.44 Aligned_cols=49 Identities=24% Similarity=0.498 Sum_probs=30.1
Q ss_pred ceeEeceeeCCCCChHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCcceecc
Q 002847 50 KNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 50 k~F~FD~VF~~~asQeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM~ 101 (874)
..|+||.... ..++...+..+..++.. .|....++-||++|+|||+.+.
T Consensus 100 ~~~tfd~fv~-g~~n~~a~~~~~~~a~~--~~~~~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 100 PDYTFENFVV-GPGNSFAYHAALEVAKH--PGRYNPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp TTCSGGGCCC-CTTTHHHHHHHHHHHHS--TTSSCCEEEECSSSSSHHHHHH
T ss_pred CCCChhhcCC-CCchHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHH
Confidence 4588888543 22344445444444433 2313468899999999999763
No 54
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=72.99 E-value=1.8 Score=48.25 Aligned_cols=47 Identities=13% Similarity=0.171 Sum_probs=35.0
Q ss_pred ceeEeceeeCCCCChHHHHHhhHHHHHHhhcCCC--eeEEEeccCCCCcceec
Q 002847 50 KNYSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYN--ACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 50 k~F~FD~VF~~~asQeeVF~~V~PlV~svLdGyN--~TIfAYGQTGSGKTyTM 100 (874)
..+.||.|.+ |+++.+.+..+++.+..|.. ..|+-||++|+|||+..
T Consensus 32 ~~~~~~~iiG----~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 32 AKQAASGLVG----QENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp BCSEETTEES----CHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHH
T ss_pred hhhchhhccC----HHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHH
Confidence 3466777764 57777777777777777754 36888999999999865
No 55
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=72.03 E-value=1.4 Score=44.52 Aligned_cols=51 Identities=20% Similarity=0.254 Sum_probs=27.7
Q ss_pred ceeEeceeeCCCCChHHHHHhhHHHH-HHhhcCC----CeeEEEeccCCCCcceec
Q 002847 50 KNYSFDKVFHPGSSQDEVFSEVEPVI-KSVLDGY----NACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 50 k~F~FD~VF~~~asQeeVF~~V~PlV-~svLdGy----N~TIfAYGQTGSGKTyTM 100 (874)
..++||.|.+.+....++-+-+..+- ..++.+. ...|+-||++|+|||+.+
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 45788888765433233222111110 0122221 223899999999999875
No 56
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=71.70 E-value=1.6 Score=42.77 Aligned_cols=25 Identities=36% Similarity=0.608 Sum_probs=20.0
Q ss_pred HHHHHhhcCCCeeEEEeccCCCCccee
Q 002847 73 PVIKSVLDGYNACIFAYGQTGTGKSFT 99 (874)
Q Consensus 73 PlV~svLdGyN~TIfAYGQTGSGKTyT 99 (874)
.++..+++|.| ++..++||||||.+
T Consensus 43 ~~i~~~~~~~~--~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 43 RAIMPIIEGHD--VLAQAQSGTGKTGT 67 (224)
T ss_dssp HHHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHHhcCCC--EEEECCCCCcHHHH
Confidence 34566778877 67889999999987
No 57
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=71.11 E-value=4 Score=36.68 Aligned_cols=47 Identities=23% Similarity=0.367 Sum_probs=34.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhH
Q 002847 343 ARDQKEVSMKNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSF 389 (874)
Q Consensus 343 ~~~~k~~~~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~l 389 (874)
.++........++.+...|+.|+..|+.+|+.|+.++..|......+
T Consensus 30 SR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~ 76 (87)
T 1hjb_A 30 SRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQL 76 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 34455555667788888889999889988888888888776544433
No 58
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=70.70 E-value=1.9 Score=41.65 Aligned_cols=25 Identities=40% Similarity=0.502 Sum_probs=19.0
Q ss_pred HHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 74 VIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 74 lV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
.+..+++|.| ++..++||||||.+.
T Consensus 33 ~i~~~~~~~~--~lv~apTGsGKT~~~ 57 (206)
T 1vec_A 33 SIPIALSGRD--ILARAKNGTGKSGAY 57 (206)
T ss_dssp HHHHHHTTCC--EEEECCSSSTTHHHH
T ss_pred HHHHHccCCC--EEEECCCCCchHHHH
Confidence 4566678866 577889999999653
No 59
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=70.44 E-value=1.8 Score=41.62 Aligned_cols=24 Identities=29% Similarity=0.609 Sum_probs=18.9
Q ss_pred HHHHhhcCCCeeEEEeccCCCCccee
Q 002847 74 VIKSVLDGYNACIFAYGQTGTGKSFT 99 (874)
Q Consensus 74 lV~svLdGyN~TIfAYGQTGSGKTyT 99 (874)
.+..+++|.+ ++..++||||||.+
T Consensus 31 ~i~~~~~~~~--~li~~~TGsGKT~~ 54 (207)
T 2gxq_A 31 ALPLALEGKD--LIGQARTGTGKTLA 54 (207)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHHcCCCC--EEEECCCCChHHHH
Confidence 4566678876 56778999999987
No 60
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.04 E-value=7.4 Score=43.82 Aligned_cols=128 Identities=18% Similarity=0.258 Sum_probs=0.0
Q ss_pred ccccCCCCEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEEEecCC------------CCceeEeceeeCCCCChHHHHHh
Q 002847 3 IVSAIAGNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADN------------KSKNYSFDKVFHPGSSQDEVFSE 70 (874)
Q Consensus 3 ~v~~~kgnIrV~VRIRPl~~~E~~~~~~~vI~~d~~~v~l~~~~~------------~~k~F~FD~VF~~~asQeeVF~~ 70 (874)
.+......-+.+|++......+.......+........++..-.. ....-+||.|-+-+.--+++.+.
T Consensus 108 ~iv~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~d~~v~~~~~~~~p~v~~~digGl~~~k~~l~e~ 187 (428)
T 4b4t_K 108 GIVSSTTGMSYVVRILSTLDRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQKQEIREA 187 (428)
T ss_dssp EEEEETTSCEEEECBCSSSCTTTCCTTCEEEECSSSCCEEEEECSCCCCSSCCCEEESSCSCCGGGSCSCHHHHHHHHHH
T ss_pred eEEecCCCCEEEEeccccccHhhCCCCceeeeecchhhHHhhcCcccCcchhhccCCCCCCCCHHHhccHHHHHHHHHHH
Q ss_pred h-HHHH-HHhhcCCCee----EEEeccCCCCcceeccC-----------------CCCCCCcHHHHHHHHHHHHHhcCCe
Q 002847 71 V-EPVI-KSVLDGYNAC----IFAYGQTGTGKSFTMEG-----------------TPDSPGIVPRAIEAIFKQAMESNHA 127 (874)
Q Consensus 71 V-~PlV-~svLdGyN~T----IfAYGQTGSGKTyTM~G-----------------s~e~~GIIPRaledLF~~i~e~~~~ 127 (874)
| .|+. ...+..+... |+-||++|+|||...-- -....|--.+.++++|..+......
T Consensus 188 v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~aP~ 267 (428)
T 4b4t_K 188 VELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPS 267 (428)
T ss_dssp HHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHHHHcCCC
Q ss_pred eEE
Q 002847 128 FRI 130 (874)
Q Consensus 128 f~V 130 (874)
+.+
T Consensus 268 Iif 270 (428)
T 4b4t_K 268 IIF 270 (428)
T ss_dssp EEE
T ss_pred eee
No 61
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.48 E-value=9.4 Score=43.06 Aligned_cols=74 Identities=19% Similarity=0.279 Sum_probs=47.7
Q ss_pred eEeceeeCCCCChHHHHHhh-HHHHH-Hhhc--C--CCeeEEEeccCCCCcceecc--------------CC---CCCCC
Q 002847 52 YSFDKVFHPGSSQDEVFSEV-EPVIK-SVLD--G--YNACIFAYGQTGTGKSFTME--------------GT---PDSPG 108 (874)
Q Consensus 52 F~FD~VF~~~asQeeVF~~V-~PlV~-svLd--G--yN~TIfAYGQTGSGKTyTM~--------------Gs---~e~~G 108 (874)
-+||.|-+-+..-+++.+.| .|+.. ..+. | .--.|+-||++|+|||++.- |+ ....|
T Consensus 178 ~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vG 257 (434)
T 4b4t_M 178 ETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIG 257 (434)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSS
T ss_pred CChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccc
Confidence 46788777654445555543 45542 2232 3 24568999999999997652 11 23458
Q ss_pred cHHHHHHHHHHHHHhcC
Q 002847 109 IVPRAIEAIFKQAMESN 125 (874)
Q Consensus 109 IIPRaledLF~~i~e~~ 125 (874)
--.+.++.+|..+....
T Consensus 258 ese~~ir~lF~~A~~~a 274 (434)
T 4b4t_M 258 EGAKLVRDAFALAKEKA 274 (434)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHhcC
Confidence 88999999999876543
No 62
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=68.66 E-value=2.2 Score=40.48 Aligned_cols=34 Identities=29% Similarity=0.403 Sum_probs=21.7
Q ss_pred hHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 64 QDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 64 QeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
++++.+.+...+. .+....++-||++|+|||+.+
T Consensus 22 ~~~~~~~l~~~l~---~~~~~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 22 QDEVIQRLKGYVE---RKNIPHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CHHHHHHHHHHHH---TTCCCCEEEECSTTSSHHHHH
T ss_pred cHHHHHHHHHHHh---CCCCCeEEEECCCCCCHHHHH
Confidence 3445444443333 343345999999999999864
No 63
>4gkp_A Spindle POLE BODY-associated protein VIK1; kinesin motor domain-like fold, microtubule binding protein, KAR3, structural protein; 2.42A {Candida glabrata} PDB: 4gkq_A
Probab=68.26 E-value=26 Score=37.48 Aligned_cols=262 Identities=15% Similarity=0.212 Sum_probs=125.5
Q ss_pred cccccCCCCEEEEEEeCCCCCCcCCCCCCcEEEeCCCceEEEecCCCCceeEeceeeCCC--CChHHHHHhhHHHHHHhh
Q 002847 2 LIVSAIAGNIRVFCRIRPISMGENFGRLRPVIAKDSSNVLLKLADNKSKNYSFDKVFHPG--SSQDEVFSEVEPVIKSVL 79 (874)
Q Consensus 2 ~~v~~~kgnIrV~VRIRPl~~~E~~~~~~~vI~~d~~~v~l~~~~~~~k~F~FD~VF~~~--asQeeVF~~V~PlV~svL 79 (874)
+.+-+++|.||.|+=+-+-..++. ..|...+..+ . ..+..+.|.|++|.+.. ..++-++++.+...+-+|
T Consensus 6 NSIdElkG~iRcFAYi~e~~l~~~-----~~IdY~~~tI--~-~~~~~~~y~F~RiIp~~~~~e~~ll~qE~~~Y~DmCL 77 (275)
T 4gkp_A 6 NSITELKGCARLFANIIEDEISEK-----LIVNYSDESI--E-DMKNHKTYKFTKLIQNFSHQNKDLFKEDLHVYIDFCL 77 (275)
T ss_dssp ----------CEEEEEETTTSCTT-----EEEETTTTEE--E-ETTTTEEEECSEEEEECSSSCCCGGGTHHHHHHHHHH
T ss_pred ccHHHhcCcEEEEEEEccccCCcc-----EEEeccccee--c-cCCCccEEEEEeeeccccCCHHHHHHHHHHHHHHHHh
Confidence 467899999999998866443332 1233333333 2 23345889999999654 344445567899999888
Q ss_pred -cCCCeeEEEeccCCCCcceeccCCCCCCCcHHHHHHHHHHHHHhcCCeeEEEEEEEEEecc-eeecccCCCCCCCCCCC
Q 002847 80 -DGYNACIFAYGQTGTGKSFTMEGTPDSPGIVPRAIEAIFKQAMESNHAFRISFSMLEIYLG-SLKDLLVTQPTKATDPL 157 (874)
Q Consensus 80 -dGyN~TIfAYGQTGSGKTyTM~Gs~e~~GIIPRaledLF~~i~e~~~~f~VsVS~lEIYNE-kV~DLL~~~~~~~~~~~ 157 (874)
.+.|+.|++.++.-- +-|--..++.+... -...|.+.+.|+=+-.+ --.|||........+
T Consensus 78 ~k~~NfnlISiS~~~~------------~~lr~~ll~f~~~~---y~~~y~itlQ~V~Ls~~~~S~Dll~~~~~~~~d-- 140 (275)
T 4gkp_A 78 KRRENFNLFSVGSSNI------------PNTFEKLLAFFKNN---YFDKFVITLQYVMLSDNADSQDLLSNNKDGGKD-- 140 (275)
T ss_dssp HTTCCEEEEEECCSSC------------CSHHHHHHHHHHHH---TTTTEEEEEEEEEEC----CEETTCC---------
T ss_pred ccCCCceEEEecCCCc------------HHHHHHHHHHHHHh---ccccceEEEEEEEecCCCcccccccCCccccCC--
Confidence 799999999986442 22444455554443 45678888888877644 455888655432211
Q ss_pred CCcceeeecCCCcEEecCcEEEEeCCHHHHHHHHHHhccccccccccCCCCCCCceEEEEEEEEEecCCccccccceeEE
Q 002847 158 PPCLSIHTEPKGGIEIDNLVTIQVNDFNQALRLYRLGCRFRSTASTNSNRTSSRSHCMIRISITCFDAPERRREKNKIWL 237 (874)
Q Consensus 158 ~~~L~I~ed~~ggv~V~gLtev~V~S~eEal~lL~~G~~nR~tasT~~N~~SSRSHaIftI~I~~~d~~e~~~~~SkL~L 237 (874)
..+.+.-+.+ .+.+. -+.+.+.+ |.......-..-+......-.|+++.+...+..+. ..-.++|
T Consensus 141 -~eI~Lk~e~~-sI~ld-S~~i~i~~----------~~~~~~~~~~~~~~~~~~Gi~IlKfq~~~~~~~e~--~pidfYF 205 (275)
T 4gkp_A 141 -VEIKLKIEES-TISLG-STLITLDE----------ITDKLQIKKKYSQLNHQNGIGLSKFQFFCLQDIEP--IPIDFYF 205 (275)
T ss_dssp ----CEEECSS-CEEEC-SCCEEGGG----------CCSCC--CCSCC-----CCEEEEEEEEEETTCSSC--CCEEEEE
T ss_pred -cceeEEeecc-eeeec-ceEEEecc----------CccccchhhhccCCCCCCCceEEEEEEEeccCCCC--CceeEEE
Confidence 1122221111 12211 11122221 11111110111111111223366666654332111 1226789
Q ss_pred EeccCccccccccccchhhHHHHHhhhhHHHHHHHHHHHhcCCCCccCCCCccccccccccCCCceeeEEEecCCCCCCH
Q 002847 238 VDLGGSERVLKTKARGRRLDEGKAINLSLSALGDVIYALQRRKRHVPYRNSKLTQVLKDSLGEDSKTLMLVHVSPKEDDL 317 (874)
Q Consensus 238 VDLAGSER~~kt~a~G~rlkEg~~INkSLsALg~VI~ALs~k~~hIPYRDSKLTrLLqDSLGGNSKT~mIa~ISPs~~~~ 317 (874)
|.+-+..- ...|.+++.. .. +-.|+++-+|+--| ...|-+++.++.-..
T Consensus 206 iei~~~~t--------------------~~~L~~~~s~----~~---~~~spi~~iLk~LL-~~TKS~flfni~~~~--- 254 (275)
T 4gkp_A 206 IEIYQPSI--------------------YPILKRSTGT----ES---NLNSPLEIVLKKIF-HDTKSAFVFQIDHSA--- 254 (275)
T ss_dssp EEECCGGG--------------------HHHHHHC---------------CHHHHHHHHHH-HHSBCCEEEEESSCT---
T ss_pred EEecCHHH--------------------HHHHHhccCC----CC---CCCCcHHHHHHHHH-hcCcceEEEEccCcc---
Confidence 88876542 1122222110 00 11255665665555 567889999998653
Q ss_pred HHHHHHHHHHHHhhcccc
Q 002847 318 CETICSLNFATRVKSVHL 335 (874)
Q Consensus 318 eETLsTLrFAsRAK~Ik~ 335 (874)
+.-..|..+.++..+++
T Consensus 255 -n~~~lL~ls~~l~~~~~ 271 (275)
T 4gkp_A 255 -EVYDILKLSSHLSFIRN 271 (275)
T ss_dssp -THHHHHHHHHHHTTCCC
T ss_pred -hHHHHHHHHHHhccccC
Confidence 23467888888888874
No 64
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=67.97 E-value=2.9 Score=44.21 Aligned_cols=38 Identities=21% Similarity=0.380 Sum_probs=27.7
Q ss_pred ChHHHHHhhHHHHHHhhcCC-CeeEEEeccCCCCcceec
Q 002847 63 SQDEVFSEVEPVIKSVLDGY-NACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 63 sQeeVF~~V~PlV~svLdGy-N~TIfAYGQTGSGKTyTM 100 (874)
.+++..+.+...+..++.|. ...|+-||++|+|||+.+
T Consensus 24 gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 24 FREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 45666666666666666554 458999999999999864
No 65
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=67.87 E-value=7.8 Score=34.10 Aligned_cols=45 Identities=24% Similarity=0.367 Sum_probs=35.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChh
Q 002847 343 ARDQKEVSMKNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAH 387 (874)
Q Consensus 343 ~~~~k~~~~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~ 387 (874)
.++.......+++++...|+.|+..|+.+|+.|+.++..|.....
T Consensus 30 SR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~ 74 (78)
T 1gu4_A 30 SRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566778888899999999999999999999988876543
No 66
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=67.87 E-value=1.7 Score=45.64 Aligned_cols=50 Identities=18% Similarity=0.258 Sum_probs=28.2
Q ss_pred eeEeceeeCCCCChHHHHHhh-HHHHH-Hhh----cCCCeeEEEeccCCCCcceec
Q 002847 51 NYSFDKVFHPGSSQDEVFSEV-EPVIK-SVL----DGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 51 ~F~FD~VF~~~asQeeVF~~V-~PlV~-svL----dGyN~TIfAYGQTGSGKTyTM 100 (874)
.+.||.|.+.+..-+.+.+.+ .|+.. ..+ -.....|+-||++|+|||+.+
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 356777776543333333333 22210 111 133456899999999999764
No 67
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=67.69 E-value=2.7 Score=39.11 Aligned_cols=34 Identities=12% Similarity=0.226 Sum_probs=22.0
Q ss_pred HHHhhHHHHHHhhcCCCeeEEEeccCCCCcceecc
Q 002847 67 VFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 67 VF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM~ 101 (874)
....+...+..+.. .+..|+-||++|+|||+..-
T Consensus 12 ~~~~l~~~~~~~~~-~~~~vll~G~~GtGKt~lA~ 45 (143)
T 3co5_A 12 AIQEMNREVEAAAK-RTSPVFLTGEAGSPFETVAR 45 (143)
T ss_dssp HHHHHHHHHHHHHT-CSSCEEEEEETTCCHHHHHG
T ss_pred HHHHHHHHHHHHhC-CCCcEEEECCCCccHHHHHH
Confidence 33444444444443 34558889999999998753
No 68
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=67.36 E-value=2.3 Score=42.47 Aligned_cols=25 Identities=32% Similarity=0.589 Sum_probs=20.2
Q ss_pred HHHHHhhcCCCeeEEEeccCCCCccee
Q 002847 73 PVIKSVLDGYNACIFAYGQTGTGKSFT 99 (874)
Q Consensus 73 PlV~svLdGyN~TIfAYGQTGSGKTyT 99 (874)
.++..+++|.+ +++.++||||||.+
T Consensus 58 ~~i~~~~~~~~--~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 58 QAIPVMLHGRE--LLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHHHhCCCC--EEEECCCCCcHHHH
Confidence 35667788887 67888999999986
No 69
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=66.93 E-value=2.7 Score=44.10 Aligned_cols=44 Identities=20% Similarity=0.286 Sum_probs=30.7
Q ss_pred EeceeeCCCCChHHHHHhhHHHHHHhh--cCCCeeEEEeccCCCCcceec
Q 002847 53 SFDKVFHPGSSQDEVFSEVEPVIKSVL--DGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 53 ~FD~VF~~~asQeeVF~~V~PlV~svL--dGyN~TIfAYGQTGSGKTyTM 100 (874)
.|+.+.+ ++.+...+...+..+. .+....|+-||++|+|||+..
T Consensus 27 ~~~~iiG----~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 27 NFDGYIG----QESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp SGGGCCS----CHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CHHHhCC----hHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 4565544 5666666666666654 344567999999999999754
No 70
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=65.72 E-value=3.1 Score=41.95 Aligned_cols=47 Identities=23% Similarity=0.324 Sum_probs=29.5
Q ss_pred ceeEeceeeCCCCChHHHHHhhHHHHHHhhc---------CCCeeEEEeccCCCCcceec
Q 002847 50 KNYSFDKVFHPGSSQDEVFSEVEPVIKSVLD---------GYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 50 k~F~FD~VF~~~asQeeVF~~V~PlV~svLd---------GyN~TIfAYGQTGSGKTyTM 100 (874)
..+.|+.|.+. +++-+.+..++..+.. .....|+-||++|+|||+.+
T Consensus 7 ~~~~~~~i~G~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 7 IKTTFADVAGC----DEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp SCCCGGGSCSC----HHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHH
T ss_pred CCCCHHHhcCc----HHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHH
Confidence 34678887765 4444444444433211 23446899999999999864
No 71
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=65.54 E-value=1.6 Score=43.80 Aligned_cols=26 Identities=38% Similarity=0.681 Sum_probs=20.6
Q ss_pred HHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 73 PVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 73 PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
..+..+++|.| ++..++||||||.+.
T Consensus 59 ~ai~~i~~~~~--~li~apTGsGKT~~~ 84 (237)
T 3bor_A 59 RAIIPCIKGYD--VIAQAQSGTGKTATF 84 (237)
T ss_dssp HHHHHHHTTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 45667788877 678899999999773
No 72
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=65.24 E-value=2.5 Score=44.74 Aligned_cols=41 Identities=34% Similarity=0.653 Sum_probs=26.2
Q ss_pred EeceeeCCCCChHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 53 SFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 53 ~FD~VF~~~asQeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
.|+.+++ |+++.+.+...|. .|.-..++-||+.|+|||+++
T Consensus 23 ~~~~~~g----~~~~~~~L~~~i~---~g~~~~~ll~Gp~G~GKTtla 63 (340)
T 1sxj_C 23 TLDEVYG----QNEVITTVRKFVD---EGKLPHLLFYGPPGTGKTSTI 63 (340)
T ss_dssp SGGGCCS----CHHHHHHHHHHHH---TTCCCCEEEECSSSSSHHHHH
T ss_pred cHHHhcC----cHHHHHHHHHHHh---cCCCceEEEECCCCCCHHHHH
Confidence 4566664 5556554443333 453333788999999999986
No 73
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=64.60 E-value=2.7 Score=46.99 Aligned_cols=28 Identities=29% Similarity=0.459 Sum_probs=22.6
Q ss_pred HHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 73 PVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 73 PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
+++..++..-.+.|+..|+||||||.+|
T Consensus 157 ~~L~~l~~~~ggii~I~GpnGSGKTTlL 184 (418)
T 1p9r_A 157 DNFRRLIKRPHGIILVTGPTGSGKSTTL 184 (418)
T ss_dssp HHHHHHHTSSSEEEEEECSTTSCHHHHH
T ss_pred HHHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 4566666666778999999999999986
No 74
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=64.42 E-value=2.8 Score=41.55 Aligned_cols=25 Identities=28% Similarity=0.563 Sum_probs=19.4
Q ss_pred HHHHHhhcCCCeeEEEeccCCCCccee
Q 002847 73 PVIKSVLDGYNACIFAYGQTGTGKSFT 99 (874)
Q Consensus 73 PlV~svLdGyN~TIfAYGQTGSGKTyT 99 (874)
.++..+++|.+ ++..++||||||.+
T Consensus 54 ~~i~~~~~~~~--~li~a~TGsGKT~~ 78 (236)
T 2pl3_A 54 QTIGLALQGKD--VLGAAKTGSGKTLA 78 (236)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHHHhCCCC--EEEEeCCCCcHHHH
Confidence 34566778877 56778999999986
No 75
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=63.88 E-value=2.2 Score=43.86 Aligned_cols=47 Identities=17% Similarity=0.287 Sum_probs=27.6
Q ss_pred ceeEeceeeCCCCChHHHHHhhHHHHHH-----hhcCC----CeeEEEeccCCCCcceec
Q 002847 50 KNYSFDKVFHPGSSQDEVFSEVEPVIKS-----VLDGY----NACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 50 k~F~FD~VF~~~asQeeVF~~V~PlV~s-----vLdGy----N~TIfAYGQTGSGKTyTM 100 (874)
..++||.|.+.+ ++...+..++.. ++.+. ...|+-||++|||||+.+
T Consensus 35 ~~~~~~~i~g~~----~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 35 PKVTFKDVAGAE----EAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCCGGGSSSCH----HHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCChH----HHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 457788877654 333333332221 22222 223899999999999875
No 76
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=63.45 E-value=3.7 Score=42.21 Aligned_cols=38 Identities=29% Similarity=0.398 Sum_probs=25.9
Q ss_pred ChHHHHHhhHHHHHHhhcCC------CeeEEEeccCCCCcceec
Q 002847 63 SQDEVFSEVEPVIKSVLDGY------NACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 63 sQeeVF~~V~PlV~svLdGy------N~TIfAYGQTGSGKTyTM 100 (874)
.|..+.+.+...+.....|. ...|+-+|++|+|||++.
T Consensus 21 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 21 GQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELA 64 (311)
T ss_dssp SCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHH
Confidence 45666666555555544332 367999999999999763
No 77
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=63.39 E-value=3.4 Score=42.71 Aligned_cols=45 Identities=13% Similarity=0.252 Sum_probs=29.1
Q ss_pred eEeceeeCCCCChHHHHHhhHHHHHHhh--cCCCeeEEEeccCCCCcceec
Q 002847 52 YSFDKVFHPGSSQDEVFSEVEPVIKSVL--DGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 52 F~FD~VF~~~asQeeVF~~V~PlV~svL--dGyN~TIfAYGQTGSGKTyTM 100 (874)
..|+.+.+ ++.+...+...+..+. .+....|+-||++|+|||+..
T Consensus 9 ~~~~~~ig----~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 9 KTLDEYIG----QERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CSTTTCCS----CHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHH
T ss_pred ccHHHhhC----HHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHH
Confidence 35666554 3555555555555443 234567888999999999764
No 78
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=63.01 E-value=3.1 Score=40.66 Aligned_cols=26 Identities=19% Similarity=0.445 Sum_probs=19.7
Q ss_pred HHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 73 PVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 73 PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
..+..+++|.| ++..++||||||.+.
T Consensus 43 ~~i~~~~~~~~--~li~~~TGsGKT~~~ 68 (220)
T 1t6n_A 43 ECIPQAILGMD--VLCQAKSGMGKTAVF 68 (220)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHhCCCC--EEEECCCCCchhhhh
Confidence 34566778877 567789999999764
No 79
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=62.94 E-value=2 Score=45.00 Aligned_cols=37 Identities=24% Similarity=0.520 Sum_probs=24.0
Q ss_pred hHHHHHhhHHHHHHhhc-CCCeeEEEeccCCCCcceec
Q 002847 64 QDEVFSEVEPVIKSVLD-GYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 64 QeeVF~~V~PlV~svLd-GyN~TIfAYGQTGSGKTyTM 100 (874)
+++..+.+...+..++. +....++-||++|+|||+.+
T Consensus 25 r~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 25 REDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHH
Confidence 44444444444444433 34568899999999999764
No 80
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=62.63 E-value=4 Score=39.00 Aligned_cols=34 Identities=21% Similarity=0.317 Sum_probs=21.5
Q ss_pred hHHHHHhhHHHHHHhhcCC-CeeEEEeccCCCCcceec
Q 002847 64 QDEVFSEVEPVIKSVLDGY-NACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 64 QeeVF~~V~PlV~svLdGy-N~TIfAYGQTGSGKTyTM 100 (874)
++++.+.+...+. .|. ...++-||++|+|||+.+
T Consensus 28 ~~~~~~~l~~~l~---~~~~~~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 28 QEHVLTALANGLS---LGRIHHAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp CHHHHHHHHHHHH---HTCCCSEEEEECSTTSCHHHHH
T ss_pred cHHHHHHHHHHHH---cCCCCeEEEEECCCCCCHHHHH
Confidence 4444444443333 233 347899999999999864
No 81
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=62.16 E-value=3.2 Score=40.90 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=20.0
Q ss_pred HHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 73 PVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 73 PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
..+..+++|.|+ +..++||||||.+.
T Consensus 49 ~~i~~~~~~~~~--l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 49 QAWPIILQGIDL--IVVAQTGTGKTLSY 74 (228)
T ss_dssp HHHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHHhCCCCE--EEECCCCChHHHHH
Confidence 355667788775 67789999999863
No 82
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=62.09 E-value=13 Score=32.95 Aligned_cols=46 Identities=17% Similarity=0.283 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHhh
Q 002847 350 SMKNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQEQLEV 395 (874)
Q Consensus 350 ~~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~lqeql~~ 395 (874)
...+|+.++..++.|+..||+.++.+..+++.+.+....++.+++.
T Consensus 21 ~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~ 66 (83)
T 2xdj_A 21 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDS 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888999999999999999999999999998877777777764
No 83
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=61.84 E-value=23 Score=39.95 Aligned_cols=74 Identities=23% Similarity=0.369 Sum_probs=45.1
Q ss_pred eEeceeeCCCCChHHHHHhh-HHHHH-Hhhc--CC--CeeEEEeccCCCCcceecc--------------CC---CCCCC
Q 002847 52 YSFDKVFHPGSSQDEVFSEV-EPVIK-SVLD--GY--NACIFAYGQTGTGKSFTME--------------GT---PDSPG 108 (874)
Q Consensus 52 F~FD~VF~~~asQeeVF~~V-~PlV~-svLd--Gy--N~TIfAYGQTGSGKTyTM~--------------Gs---~e~~G 108 (874)
.+||.|-+-+..-+++.+.| .|+-. ..+. |. --.|+-||++|+|||++.- |+ ....|
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~G 257 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIG 257 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSS
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccch
Confidence 45677666433333343333 34331 2332 33 3569999999999997652 11 23458
Q ss_pred cHHHHHHHHHHHHHhcC
Q 002847 109 IVPRAIEAIFKQAMESN 125 (874)
Q Consensus 109 IIPRaledLF~~i~e~~ 125 (874)
--.+.++.+|..+....
T Consensus 258 ese~~ir~~F~~A~~~~ 274 (437)
T 4b4t_L 258 ESARIIREMFAYAKEHE 274 (437)
T ss_dssp HHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 88899999999876543
No 84
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=61.63 E-value=4.5 Score=37.58 Aligned_cols=19 Identities=26% Similarity=0.574 Sum_probs=15.8
Q ss_pred CCCeeEEEeccCCCCccee
Q 002847 81 GYNACIFAYGQTGTGKSFT 99 (874)
Q Consensus 81 GyN~TIfAYGQTGSGKTyT 99 (874)
..+..|+-||++|+|||+.
T Consensus 22 ~~~~~vll~G~~GtGKt~l 40 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTG 40 (145)
T ss_dssp TCCSCEEEESSTTSSHHHH
T ss_pred CCCCCEEEECCCCCCHHHH
Confidence 4556689999999999875
No 85
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=61.29 E-value=3 Score=45.61 Aligned_cols=28 Identities=39% Similarity=0.491 Sum_probs=21.8
Q ss_pred HHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 73 PVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 73 PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
+++.+++.--.+.|...|+||||||.+|
T Consensus 113 ~~l~~l~~~~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 113 EVFKRVSDVPRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp HHHHHHHHCSSEEEEEECSTTSCHHHHH
T ss_pred HHHHHHHhCCCCEEEEECCCCCCHHHHH
Confidence 3555556555668899999999999986
No 86
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=61.21 E-value=3.4 Score=41.48 Aligned_cols=25 Identities=36% Similarity=0.612 Sum_probs=19.0
Q ss_pred HHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 74 VIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 74 lV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
++..+++|.| ++..++||||||.+.
T Consensus 53 ~i~~i~~~~~--~l~~a~TGsGKT~~~ 77 (253)
T 1wrb_A 53 AIPAILEHRD--IMACAQTGSGKTAAF 77 (253)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 4566778877 566789999999763
No 87
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=61.17 E-value=1.7 Score=41.80 Aligned_cols=24 Identities=33% Similarity=0.463 Sum_probs=18.0
Q ss_pred HHHhhcCCCeeEEEeccCCCCcceec
Q 002847 75 IKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 75 V~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
+..+++|.+ ++..++||+|||.+.
T Consensus 42 i~~~~~~~~--~li~~~tGsGKT~~~ 65 (216)
T 3b6e_A 42 AQPALEGKN--IIICLPTGSGKTRVA 65 (216)
T ss_dssp HHHHHTTCC--EEEECSCHHHHHHHH
T ss_pred HHHHhcCCC--EEEEcCCCCCHHHHH
Confidence 344566765 567899999999875
No 88
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=60.38 E-value=5 Score=41.17 Aligned_cols=35 Identities=20% Similarity=0.391 Sum_probs=23.7
Q ss_pred ChHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 63 SQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 63 sQeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
.|+++.+.+...+. .|....++-||++|+|||++.
T Consensus 29 g~~~~~~~l~~~l~---~~~~~~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 29 GQEHIVKRLKHYVK---TGSMPHLLFAGPPGVGKTTAA 63 (327)
T ss_dssp SCHHHHHHHHHHHH---HTCCCEEEEESCTTSSHHHHH
T ss_pred CCHHHHHHHHHHHH---cCCCCeEEEECcCCCCHHHHH
Confidence 35666655544443 344445899999999999864
No 89
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=59.86 E-value=23 Score=29.19 Aligned_cols=41 Identities=17% Similarity=0.365 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 002847 344 RDQKEVSMKNLQQKMKKIEEERLRVRGEIENLSEKLEALTR 384 (874)
Q Consensus 344 ~~~k~~~~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~ 384 (874)
+..+...+..|+.+...|+.++..|+.+|..|+.++..|..
T Consensus 17 R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 17 RQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555567788888888888888888888888888776643
No 90
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=59.52 E-value=3.2 Score=46.60 Aligned_cols=39 Identities=21% Similarity=0.393 Sum_probs=27.0
Q ss_pred CChHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 62 SSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 62 asQeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
..|+.+......+...+-.|.-..|+-||++|+|||+..
T Consensus 29 vGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 29 IGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHH
T ss_pred CCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHH
Confidence 346777644344444444565578999999999999865
No 91
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.51 E-value=21 Score=40.08 Aligned_cols=74 Identities=24% Similarity=0.368 Sum_probs=47.0
Q ss_pred eEeceeeCCCCChHHHHHhh-HHHHH-Hhhc--CC--CeeEEEeccCCCCcceecc--------------CC---CCCCC
Q 002847 52 YSFDKVFHPGSSQDEVFSEV-EPVIK-SVLD--GY--NACIFAYGQTGTGKSFTME--------------GT---PDSPG 108 (874)
Q Consensus 52 F~FD~VF~~~asQeeVF~~V-~PlV~-svLd--Gy--N~TIfAYGQTGSGKTyTM~--------------Gs---~e~~G 108 (874)
-+||.|-+-+.--+++-+.| .|+.. ..+. |. --.|+-||++|+|||...- |+ ....|
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vG 224 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIG 224 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTT
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccc
Confidence 45677666544444444443 45442 2332 33 3569999999999998652 11 23458
Q ss_pred cHHHHHHHHHHHHHhcC
Q 002847 109 IVPRAIEAIFKQAMESN 125 (874)
Q Consensus 109 IIPRaledLF~~i~e~~ 125 (874)
--.+.++++|..+....
T Consensus 225 ese~~vr~lF~~Ar~~a 241 (405)
T 4b4t_J 225 EGSRMVRELFVMAREHA 241 (405)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHhC
Confidence 88999999999886543
No 92
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=59.47 E-value=4.5 Score=41.30 Aligned_cols=18 Identities=33% Similarity=0.429 Sum_probs=15.3
Q ss_pred CeeEEEeccCCCCcceec
Q 002847 83 NACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 83 N~TIfAYGQTGSGKTyTM 100 (874)
...|+-||++|+|||+..
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 457889999999999864
No 93
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=59.43 E-value=3.9 Score=43.58 Aligned_cols=36 Identities=17% Similarity=0.299 Sum_probs=24.9
Q ss_pred HHHHHhhHHHH-HHhhcC---CCeeEEE--eccCCCCcceec
Q 002847 65 DEVFSEVEPVI-KSVLDG---YNACIFA--YGQTGTGKSFTM 100 (874)
Q Consensus 65 eeVF~~V~PlV-~svLdG---yN~TIfA--YGQTGSGKTyTM 100 (874)
++..+.+...+ ..+..| ....++. ||+.|+|||+.+
T Consensus 28 ~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 28 RGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp CHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHH
T ss_pred HHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHH
Confidence 33344455555 666666 5567888 999999999864
No 94
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=58.93 E-value=4 Score=43.32 Aligned_cols=26 Identities=38% Similarity=0.681 Sum_probs=21.3
Q ss_pred HHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 73 PVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 73 PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
..+..++.|.+ ++..++||||||.+.
T Consensus 69 ~~i~~~~~~~~--~lv~a~TGsGKT~~~ 94 (414)
T 3eiq_A 69 RAILPCIKGYD--VIAQAQSGTGKTATF 94 (414)
T ss_dssp HHHHHHHTTCC--EEECCCSCSSSHHHH
T ss_pred HHhHHHhCCCC--EEEECCCCCcccHHH
Confidence 45677888988 678899999999873
No 95
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=58.92 E-value=19 Score=34.72 Aligned_cols=40 Identities=13% Similarity=0.225 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH
Q 002847 353 NLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQEQ 392 (874)
Q Consensus 353 ~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~lqeq 392 (874)
.|.+++.++++|+..++.++..++.+++.+.++...++++
T Consensus 79 ~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~ 118 (138)
T 3hnw_A 79 SLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSE 118 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445555555555444444444444444443333
No 96
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=58.69 E-value=3.8 Score=43.12 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=21.5
Q ss_pred HHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 73 PVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 73 PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
..+..++.|...-++++++||||||.+.
T Consensus 121 ~ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 121 NALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp HHHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred HHHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 3567778884445788999999999863
No 97
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=58.67 E-value=3.6 Score=41.18 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=18.8
Q ss_pred HHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 74 VIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 74 lV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
++..+++|.|+ ++.++||||||.+.
T Consensus 59 ~i~~~~~g~~~--l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 59 GWPVALSGLDM--VGVAQTGSGKTLSY 83 (242)
T ss_dssp HHHHHHHTCCE--EEEECTTSCHHHHH
T ss_pred HHHHHhCCCCE--EEECCCcCHHHHHH
Confidence 45666788774 56679999999873
No 98
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=58.20 E-value=3.4 Score=42.30 Aligned_cols=25 Identities=32% Similarity=0.700 Sum_probs=20.0
Q ss_pred HHHHHhhcCCCeeEEEeccCCCCccee
Q 002847 73 PVIKSVLDGYNACIFAYGQTGTGKSFT 99 (874)
Q Consensus 73 PlV~svLdGyN~TIfAYGQTGSGKTyT 99 (874)
.++..++.|.| +++.++||||||.+
T Consensus 83 ~~i~~~~~~~~--~lv~a~TGsGKT~~ 107 (262)
T 3ly5_A 83 KSIRPLLEGRD--LLAAAKTGSGKTLA 107 (262)
T ss_dssp HHHHHHHHTCC--CEECCCTTSCHHHH
T ss_pred HHHHHHhCCCc--EEEEccCCCCchHH
Confidence 45666778877 67889999999976
No 99
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=58.02 E-value=4.2 Score=40.36 Aligned_cols=24 Identities=25% Similarity=0.373 Sum_probs=18.8
Q ss_pred HHHHhhcCCCeeEEEeccCCCCccee
Q 002847 74 VIKSVLDGYNACIFAYGQTGTGKSFT 99 (874)
Q Consensus 74 lV~svLdGyN~TIfAYGQTGSGKTyT 99 (874)
.+..+++|.| ++..++||||||.+
T Consensus 54 ~i~~~~~~~~--~l~~a~TGsGKT~~ 77 (230)
T 2oxc_A 54 AIPLGRCGLD--LIVQAKSGTGKTCV 77 (230)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHH
Confidence 4556778877 46678999999976
No 100
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=57.92 E-value=5.3 Score=42.37 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=23.3
Q ss_pred HHHHHHhhcCC---CeeEEEeccCCCCcceec
Q 002847 72 EPVIKSVLDGY---NACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 72 ~PlV~svLdGy---N~TIfAYGQTGSGKTyTM 100 (874)
...+..+++|. --||+-||+.|||||+..
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 44578888887 348999999999999864
No 101
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=57.74 E-value=19 Score=29.81 Aligned_cols=42 Identities=19% Similarity=0.336 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 002847 344 RDQKEVSMKNLQQKMKKIEEERLRVRGEIENLSEKLEALTRP 385 (874)
Q Consensus 344 ~~~k~~~~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~ 385 (874)
+..+...+..|+.++..|+.++..|+.++..|+.++..|...
T Consensus 17 R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~ 58 (62)
T 1jnm_A 17 RKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQK 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556678888888888888888888888888888777654
No 102
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=57.08 E-value=3.7 Score=41.18 Aligned_cols=26 Identities=19% Similarity=0.425 Sum_probs=19.3
Q ss_pred HHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 73 PVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 73 PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
.++..+..|.+ ++..|+||||||..+
T Consensus 68 ~~i~~i~~g~~--~~i~g~TGsGKTt~~ 93 (235)
T 3llm_A 68 EILEAISQNSV--VIIRGATGCGKTTQV 93 (235)
T ss_dssp HHHHHHHHCSE--EEEECCTTSSHHHHH
T ss_pred HHHHHHhcCCE--EEEEeCCCCCcHHhH
Confidence 45566667754 578899999999754
No 103
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=57.03 E-value=4.5 Score=41.06 Aligned_cols=26 Identities=31% Similarity=0.507 Sum_probs=19.6
Q ss_pred HHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 73 PVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 73 PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
..+..+++|.+ ++..++||||||.+.
T Consensus 72 ~~i~~i~~~~~--~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 72 EAIPLALQGRD--IIGLAETGSGKTGAF 97 (249)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHhCCCC--EEEEcCCCCCchhHh
Confidence 35566778876 566779999999863
No 104
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=56.08 E-value=5.9 Score=41.26 Aligned_cols=41 Identities=17% Similarity=0.187 Sum_probs=26.0
Q ss_pred EeceeeCCCCChHHHHHhhHHHHHHhhcCC-CeeEEEeccCCCCcceec
Q 002847 53 SFDKVFHPGSSQDEVFSEVEPVIKSVLDGY-NACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 53 ~FD~VF~~~asQeeVF~~V~PlV~svLdGy-N~TIfAYGQTGSGKTyTM 100 (874)
+||.+. .|+++...+...+. .|. ...++-||++|+|||+++
T Consensus 24 ~~~~iv----g~~~~~~~l~~~l~---~~~~~~~~L~~G~~G~GKT~la 65 (324)
T 3u61_B 24 TIDECI----LPAFDKETFKSITS---KGKIPHIILHSPSPGTGKTTVA 65 (324)
T ss_dssp STTTSC----CCHHHHHHHHHHHH---TTCCCSEEEECSSTTSSHHHHH
T ss_pred CHHHHh----CcHHHHHHHHHHHH---cCCCCeEEEeeCcCCCCHHHHH
Confidence 355554 44555544444444 343 356788899999999875
No 105
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=55.51 E-value=11 Score=39.61 Aligned_cols=37 Identities=16% Similarity=0.351 Sum_probs=26.5
Q ss_pred ChHHHHHhhHHHHHHhhcCC-----CeeEEEeccCCCCccee
Q 002847 63 SQDEVFSEVEPVIKSVLDGY-----NACIFAYGQTGTGKSFT 99 (874)
Q Consensus 63 sQeeVF~~V~PlV~svLdGy-----N~TIfAYGQTGSGKTyT 99 (874)
+-+++...+..++..++.|+ ...|+..|++|||||+.
T Consensus 8 s~~~~~~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTl 49 (287)
T 1gvn_B 8 TDKQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSL 49 (287)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHH
Confidence 33556555667777777654 34688999999999975
No 106
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=55.10 E-value=28 Score=29.00 Aligned_cols=41 Identities=27% Similarity=0.403 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 002847 344 RDQKEVSMKNLQQKMKKIEEERLRVRGEIENLSEKLEALTR 384 (874)
Q Consensus 344 ~~~k~~~~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~ 384 (874)
+..+...+..|+.+...|+.++..|+.+|..|+.++..|..
T Consensus 18 R~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 18 RNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455567778888888888888888888888877776643
No 107
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=54.94 E-value=3.4 Score=44.83 Aligned_cols=18 Identities=22% Similarity=0.562 Sum_probs=15.4
Q ss_pred CeeEEEeccCCCCcceec
Q 002847 83 NACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 83 N~TIfAYGQTGSGKTyTM 100 (874)
...|+-||++|+|||+..
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 467999999999999764
No 108
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=54.68 E-value=5.6 Score=40.79 Aligned_cols=51 Identities=12% Similarity=0.316 Sum_probs=28.6
Q ss_pred ceeEeceeeCCCCChHHHHHhh-HHHHH-Hhhc---CCCeeEEEeccCCCCcceec
Q 002847 50 KNYSFDKVFHPGSSQDEVFSEV-EPVIK-SVLD---GYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 50 k~F~FD~VF~~~asQeeVF~~V-~PlV~-svLd---GyN~TIfAYGQTGSGKTyTM 100 (874)
....|+.+.+.+..-+.+...+ .|+.. ..+. .....|+-||++|+|||+..
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 3467788776433223333222 22221 1122 23567999999999999864
No 109
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=54.09 E-value=7.2 Score=40.95 Aligned_cols=36 Identities=17% Similarity=0.262 Sum_probs=24.0
Q ss_pred ChHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 63 SQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 63 sQeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
.|+++.+.+...+.. ......++-||+.|+|||+++
T Consensus 20 g~~~~~~~L~~~l~~--~~~~~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 20 GQEHVLTALANGLSL--GRIHHAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp SCHHHHHHHHHHHHH--TCCCSEEEEESCTTSSHHHHH
T ss_pred CcHHHHHHHHHHHHh--CCCCeEEEEECCCCCCHHHHH
Confidence 456666555444432 223456899999999999875
No 110
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=53.94 E-value=5.1 Score=42.35 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=21.7
Q ss_pred HHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 73 PVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 73 PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
.++..++.|.+..++..++||||||...
T Consensus 54 ~~i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 54 NALPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp HHHHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHHhcCCCCeEEEECCCCchHHHHH
Confidence 3567777875566788899999999873
No 111
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=53.79 E-value=3.2 Score=40.77 Aligned_cols=24 Identities=38% Similarity=0.603 Sum_probs=18.4
Q ss_pred HHHHhhcCCCeeEEEeccCCCCccee
Q 002847 74 VIKSVLDGYNACIFAYGQTGTGKSFT 99 (874)
Q Consensus 74 lV~svLdGyN~TIfAYGQTGSGKTyT 99 (874)
++..+++|.| ++..++||||||.+
T Consensus 34 ~i~~~~~~~~--~lv~a~TGsGKT~~ 57 (219)
T 1q0u_A 34 IIPGALRGES--MVGQSQTGTGKTHA 57 (219)
T ss_dssp HHHHHHHTCC--EEEECCSSHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCChHHHH
Confidence 4556677876 46778999999986
No 112
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=53.32 E-value=5.1 Score=41.91 Aligned_cols=27 Identities=26% Similarity=0.365 Sum_probs=20.4
Q ss_pred HHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 74 VIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 74 lV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
++..++.|....++..++||||||.+.
T Consensus 35 ~i~~~~~~~~~~~lv~a~TGsGKT~~~ 61 (395)
T 3pey_A 35 ALPLLLHNPPRNMIAQSQSGTGKTAAF 61 (395)
T ss_dssp HHHHHHCSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCcHHHHH
Confidence 456677874455788899999999753
No 113
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=53.27 E-value=5.2 Score=42.66 Aligned_cols=26 Identities=38% Similarity=0.662 Sum_probs=20.4
Q ss_pred HHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 73 PVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 73 PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
..+..+++|.+ ++..++||||||.+.
T Consensus 66 ~ai~~i~~~~~--~lv~a~TGsGKT~~~ 91 (410)
T 2j0s_A 66 RAIKQIIKGRD--VIAQSQSGTGKTATF 91 (410)
T ss_dssp HHHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHHhCCCC--EEEECCCCCCchHHH
Confidence 35677788887 577789999999763
No 114
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=52.91 E-value=5.8 Score=42.65 Aligned_cols=46 Identities=17% Similarity=0.306 Sum_probs=28.4
Q ss_pred eeEeceeeCCCCChHHHHHhhHHHHHHh---------hcCCCeeEEEeccCCCCcceec
Q 002847 51 NYSFDKVFHPGSSQDEVFSEVEPVIKSV---------LDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 51 ~F~FD~VF~~~asQeeVF~~V~PlV~sv---------LdGyN~TIfAYGQTGSGKTyTM 100 (874)
...||.|.+ ++++.+.+...|... +.+....|+-||++|+|||+..
T Consensus 80 ~~~~~~i~G----~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 80 PVNWEDIAG----VEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCCGGGSCS----CHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHH
T ss_pred CCCHHHhCC----hHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHH
Confidence 345676655 344444443333321 2345667999999999999764
No 115
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=52.77 E-value=5 Score=41.76 Aligned_cols=20 Identities=40% Similarity=0.496 Sum_probs=16.5
Q ss_pred CCCeeEEEeccCCCCcceec
Q 002847 81 GYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 81 GyN~TIfAYGQTGSGKTyTM 100 (874)
.-...+.-.|++|||||.++
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHH
T ss_pred CCCCEEEEECCCCccHHHHH
Confidence 34567888999999999986
No 116
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=52.69 E-value=5.2 Score=41.71 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=18.9
Q ss_pred HHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 74 VIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 74 lV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
+...+..|....++-||++|+|||+++
T Consensus 49 l~~~l~~~~~~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 49 LKKTLKSANLPHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp HHHHTTCTTCCCEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCCCEEEEECCCCCCHHHHH
Confidence 334444553344899999999999875
No 117
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=51.96 E-value=6.4 Score=43.38 Aligned_cols=27 Identities=26% Similarity=0.317 Sum_probs=22.1
Q ss_pred HHHHHhhcCCCeeEEEeccCCCCccee
Q 002847 73 PVIKSVLDGYNACIFAYGQTGTGKSFT 99 (874)
Q Consensus 73 PlV~svLdGyN~TIfAYGQTGSGKTyT 99 (874)
..+..++.|.+..+++.|+||||||..
T Consensus 121 ~ai~~il~~~~~~~l~~a~TGsGKT~~ 147 (479)
T 3fmp_B 121 NALPLMLAEPPQNLIAQSQSGTGKTAA 147 (479)
T ss_dssp HHHHHHTSBSCCEEEEECCSSSSHHHH
T ss_pred HHHHHHHcCCCCcEEEEcCCCCchhHH
Confidence 356777888667789999999999976
No 118
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=51.81 E-value=6.3 Score=41.88 Aligned_cols=49 Identities=22% Similarity=0.380 Sum_probs=27.2
Q ss_pred eEeceeeCCCCChHHHHHhh-HHHH-HHhhcCC---CeeEEEeccCCCCcceec
Q 002847 52 YSFDKVFHPGSSQDEVFSEV-EPVI-KSVLDGY---NACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 52 F~FD~VF~~~asQeeVF~~V-~PlV-~svLdGy---N~TIfAYGQTGSGKTyTM 100 (874)
.+||.|.+.+..-+.+.+.+ .|+- ..++.|. ...|+-||++|+|||+..
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 46777766433222232222 2222 1334442 246899999999999864
No 119
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=51.08 E-value=5.4 Score=46.48 Aligned_cols=27 Identities=26% Similarity=0.293 Sum_probs=18.6
Q ss_pred HHHHhhcCCCeeEEEeccCCCCcceecc
Q 002847 74 VIKSVLDGYNACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 74 lV~svLdGyN~TIfAYGQTGSGKTyTM~ 101 (874)
.|..++..... .+-.|+.|||||+|+.
T Consensus 197 AV~~al~~~~~-~lI~GPPGTGKT~ti~ 223 (646)
T 4b3f_X 197 AVLFALSQKEL-AIIHGPPGTGKTTTVV 223 (646)
T ss_dssp HHHHHHHCSSE-EEEECCTTSCHHHHHH
T ss_pred HHHHHhcCCCc-eEEECCCCCCHHHHHH
Confidence 45555544333 4567999999999963
No 120
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=50.84 E-value=6.7 Score=44.69 Aligned_cols=28 Identities=32% Similarity=0.456 Sum_probs=19.2
Q ss_pred HHHHHhhcCCCeeEEEeccCCCCcceecc
Q 002847 73 PVIKSVLDGYNACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 73 PlV~svLdGyN~TIfAYGQTGSGKTyTM~ 101 (874)
.+++.+..|...++++ ++||||||.++.
T Consensus 189 ~~~~~~~~~~~~~ll~-~~TGsGKT~~~~ 216 (590)
T 3h1t_A 189 RAVQSVLQGKKRSLIT-MATGTGKTVVAF 216 (590)
T ss_dssp HHHHHHHTTCSEEEEE-ECTTSCHHHHHH
T ss_pred HHHHHHhcCCCceEEE-ecCCCChHHHHH
Confidence 3444444576655554 899999999864
No 121
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.19 E-value=52 Score=37.30 Aligned_cols=43 Identities=35% Similarity=0.482 Sum_probs=32.5
Q ss_pred CeeEEEeccCCCCcceec--------------cCC---CCCCCcHHHHHHHHHHHHHhcC
Q 002847 83 NACIFAYGQTGTGKSFTM--------------EGT---PDSPGIVPRAIEAIFKQAMESN 125 (874)
Q Consensus 83 N~TIfAYGQTGSGKTyTM--------------~Gs---~e~~GIIPRaledLF~~i~e~~ 125 (874)
--.|+-||++|+|||... -|+ ....|--.+.++.+|..+....
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~a 275 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENA 275 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHTC
T ss_pred CCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHHhcC
Confidence 457999999999999754 121 2345888999999999876543
No 122
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=50.14 E-value=6.3 Score=40.29 Aligned_cols=25 Identities=32% Similarity=0.529 Sum_probs=18.5
Q ss_pred HHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 74 VIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 74 lV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
++..+++|.+ ++..++||||||.+.
T Consensus 24 ~i~~i~~~~~--~lv~~~TGsGKT~~~ 48 (337)
T 2z0m_A 24 TIPLMLQGKN--VVVRAKTGSGKTAAY 48 (337)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhcCCC--EEEEcCCCCcHHHHH
Confidence 3455667876 566789999999764
No 123
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=50.08 E-value=33 Score=29.87 Aligned_cols=33 Identities=21% Similarity=0.231 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHh
Q 002847 362 EEERLRVRGEIENLSEKLEALTRPAHSFQEQLE 394 (874)
Q Consensus 362 eeE~~~lr~EIe~Lk~~Le~l~~~~~~lqeql~ 394 (874)
.+|+......|+.|+.+|.+....+..++.+++
T Consensus 32 ~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 32 IEELRQRDALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444444443
No 124
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=49.66 E-value=2.6 Score=44.00 Aligned_cols=49 Identities=16% Similarity=0.290 Sum_probs=23.8
Q ss_pred eEeceeeCCCCChHHHHHhh-HHHH-HHhhcCCC----eeEEEeccCCCCcceec
Q 002847 52 YSFDKVFHPGSSQDEVFSEV-EPVI-KSVLDGYN----ACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 52 F~FD~VF~~~asQeeVF~~V-~PlV-~svLdGyN----~TIfAYGQTGSGKTyTM 100 (874)
.+||.|-+.+.-.+++.+.+ .|+- ..++++++ ..|+-||+.|+|||+.+
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 45666555433333444332 3332 12333222 22899999999999864
No 125
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=49.53 E-value=6.2 Score=39.98 Aligned_cols=24 Identities=21% Similarity=0.140 Sum_probs=18.0
Q ss_pred HHHhhcCCCeeEEEeccCCCCcceec
Q 002847 75 IKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 75 V~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
+..++++.+ ++.+|+||+|||+..
T Consensus 102 i~~~~~~~~--~ll~~~tG~GKT~~a 125 (237)
T 2fz4_A 102 LERWLVDKR--GCIVLPTGSGKTHVA 125 (237)
T ss_dssp HHHHTTTSE--EEEEESSSTTHHHHH
T ss_pred HHHHHhCCC--EEEEeCCCCCHHHHH
Confidence 445666655 667789999999875
No 126
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=49.28 E-value=6.2 Score=41.79 Aligned_cols=26 Identities=31% Similarity=0.530 Sum_probs=19.7
Q ss_pred HHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 73 PVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 73 PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
..+..++.|.+ ++..++||||||.+.
T Consensus 50 ~~i~~i~~~~~--~li~a~TGsGKT~~~ 75 (400)
T 1s2m_A 50 EAIPVAITGRD--ILARAKNGTGKTAAF 75 (400)
T ss_dssp HHHHHHHHTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHhcCCC--EEEECCCCcHHHHHH
Confidence 34566677877 577889999999753
No 127
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=49.24 E-value=3.4 Score=42.26 Aligned_cols=21 Identities=29% Similarity=0.325 Sum_probs=16.3
Q ss_pred cCCCeeEEEeccCCCCcceec
Q 002847 80 DGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 80 dGyN~TIfAYGQTGSGKTyTM 100 (874)
.|....++-||++|+|||++.
T Consensus 35 ~~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 35 RKNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp TTCCCCEEEESSSSSSHHHHH
T ss_pred CCCCCeEEEECcCCcCHHHHH
Confidence 354444899999999999864
No 128
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=48.94 E-value=6.5 Score=40.57 Aligned_cols=28 Identities=36% Similarity=0.564 Sum_probs=20.6
Q ss_pred HHHHhhcCCC--eeEEEeccCCCCcceecc
Q 002847 74 VIKSVLDGYN--ACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 74 lV~svLdGyN--~TIfAYGQTGSGKTyTM~ 101 (874)
.+..++.|.- -+++-||+.|+|||+...
T Consensus 47 ~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ 76 (212)
T 1tue_A 47 ALKSFLKGTPKKNCLVFCGPANTGKSYFGM 76 (212)
T ss_dssp HHHHHHHTCTTCSEEEEESCGGGCHHHHHH
T ss_pred HHHHHHhcCCcccEEEEECCCCCCHHHHHH
Confidence 3455566632 469999999999998753
No 129
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=48.92 E-value=40 Score=28.15 Aligned_cols=39 Identities=15% Similarity=0.347 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 002847 345 DQKEVSMKNLQQKMKKIEEERLRVRGEIENLSEKLEALT 383 (874)
Q Consensus 345 ~~k~~~~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~ 383 (874)
..+......|+.+.+.|+.++..|+.+|..|+.++..|.
T Consensus 19 ~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 19 QKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444566777777777777777777777776666554
No 130
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=48.65 E-value=8.4 Score=40.64 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=21.8
Q ss_pred HHHhhHHHHHHhhcCCCeeEEEeccCCCCccee
Q 002847 67 VFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFT 99 (874)
Q Consensus 67 VF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyT 99 (874)
....+...+..+. ..+..|+-||.+|+|||+.
T Consensus 10 ~~~~~~~~~~~~a-~~~~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 10 AMQHLLNEIAMVA-PSDATVLIHGDSGTGKELV 41 (304)
T ss_dssp HHHHHHHHHHHHC-STTSCEEEESCTTSCHHHH
T ss_pred HHHHHHHHHHHHh-CCCCcEEEECCCCchHHHH
Confidence 3444444444443 4467889999999999975
No 131
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=48.43 E-value=7 Score=41.57 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=19.3
Q ss_pred HHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 74 VIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 74 lV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
++..+++|.|+ +..++||||||.+.
T Consensus 45 ~i~~i~~~~~~--lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 45 AIPIIKEKRDL--MACAQTGSGKTAAF 69 (417)
T ss_dssp HHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHccCCCE--EEEcCCCCHHHHHH
Confidence 45667788874 67789999999763
No 132
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=47.34 E-value=6.9 Score=41.25 Aligned_cols=45 Identities=22% Similarity=0.430 Sum_probs=26.8
Q ss_pred eEeceeeCCCCChHHHHHhhHHHHH------HhhcCC---CeeEEEeccCCCCcceec
Q 002847 52 YSFDKVFHPGSSQDEVFSEVEPVIK------SVLDGY---NACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 52 F~FD~VF~~~asQeeVF~~V~PlV~------svLdGy---N~TIfAYGQTGSGKTyTM 100 (874)
..||.|.+. +++-+.+..+|. ..+.+. ...|+-||++|+|||+..
T Consensus 15 ~~~~di~G~----~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 15 VKWEDVAGL----EGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCGGGSCSC----HHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCHHHhcCh----HHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 567777664 444444333221 222232 346999999999999864
No 133
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=45.84 E-value=11 Score=44.80 Aligned_cols=37 Identities=27% Similarity=0.416 Sum_probs=25.6
Q ss_pred ChHHHHHhhHHHHHHhhcCCC------eeEEEeccCCCCccee
Q 002847 63 SQDEVFSEVEPVIKSVLDGYN------ACIFAYGQTGTGKSFT 99 (874)
Q Consensus 63 sQeeVF~~V~PlV~svLdGyN------~TIfAYGQTGSGKTyT 99 (874)
.|.++-..+...+.....|.. +.|+-||++|+|||+.
T Consensus 495 Gq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~l 537 (758)
T 3pxi_A 495 GQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTEL 537 (758)
T ss_dssp SCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHH
T ss_pred ChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHH
Confidence 355555555555555555544 3799999999999986
No 134
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=45.37 E-value=8.2 Score=41.48 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=19.0
Q ss_pred HHHHhhcCCCeeEEEeccCCCCccee
Q 002847 74 VIKSVLDGYNACIFAYGQTGTGKSFT 99 (874)
Q Consensus 74 lV~svLdGyN~TIfAYGQTGSGKTyT 99 (874)
++..+++|.| ++..++||||||..
T Consensus 29 ~i~~i~~~~~--~lv~apTGsGKT~~ 52 (414)
T 3oiy_A 29 WAKRIVQGKS--FTMVAPTGVGKTTF 52 (414)
T ss_dssp HHHHHTTTCC--EECCSCSSSSHHHH
T ss_pred HHHHHhcCCC--EEEEeCCCCCHHHH
Confidence 4566678876 57889999999984
No 135
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=45.03 E-value=4.3 Score=42.60 Aligned_cols=15 Identities=40% Similarity=0.755 Sum_probs=13.8
Q ss_pred EEEeccCCCCcceec
Q 002847 86 IFAYGQTGTGKSFTM 100 (874)
Q Consensus 86 IfAYGQTGSGKTyTM 100 (874)
++-||++|+|||+++
T Consensus 39 ~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRC 53 (354)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 888999999999976
No 136
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=44.56 E-value=33 Score=28.78 Aligned_cols=35 Identities=20% Similarity=0.371 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002847 345 DQKEVSMKNLQQKMKKIEEERLRVRGEIENLSEKL 379 (874)
Q Consensus 345 ~~k~~~~~~Lqqkik~LeeE~~~lr~EIe~Lk~~L 379 (874)
..+...+..|+.++..|+.++..|+.+++.|++.+
T Consensus 26 ~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 26 ARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566667777777777766666666666554
No 137
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=44.55 E-value=5.9 Score=42.71 Aligned_cols=50 Identities=28% Similarity=0.479 Sum_probs=27.6
Q ss_pred eeEeceeeCCCCChHHHHHhh-HHHH-HHhhcCC---CeeEEEeccCCCCcceec
Q 002847 51 NYSFDKVFHPGSSQDEVFSEV-EPVI-KSVLDGY---NACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 51 ~F~FD~VF~~~asQeeVF~~V-~PlV-~svLdGy---N~TIfAYGQTGSGKTyTM 100 (874)
...|+.|.+.+..-+.+...+ .|+- ..++.+. ...|+-||++|+|||+..
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 456777766433333333332 2321 1223322 245889999999999763
No 138
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=44.17 E-value=5.9 Score=43.29 Aligned_cols=27 Identities=30% Similarity=0.370 Sum_probs=20.0
Q ss_pred HHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 74 VIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 74 lV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
++..+.-.....|...|+||||||.++
T Consensus 127 ~l~~l~~~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 127 KVLELCHRKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SHHHHTTSSSEEEEEECSSSSSHHHHH
T ss_pred HHHHHhhcCCCEEEEECCCCCCHHHHH
Confidence 344444344567888999999999986
No 139
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=44.04 E-value=9 Score=40.91 Aligned_cols=18 Identities=33% Similarity=0.602 Sum_probs=15.1
Q ss_pred CeeEEEeccCCCCcceec
Q 002847 83 NACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 83 N~TIfAYGQTGSGKTyTM 100 (874)
...|+-||++|+|||+..
T Consensus 51 ~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456888999999999863
No 140
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=43.95 E-value=12 Score=44.03 Aligned_cols=37 Identities=27% Similarity=0.389 Sum_probs=24.0
Q ss_pred hHHHHHhhHHHHHHhhcCCC------eeEEEeccCCCCcceec
Q 002847 64 QDEVFSEVEPVIKSVLDGYN------ACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 64 QeeVF~~V~PlV~svLdGyN------~TIfAYGQTGSGKTyTM 100 (874)
|+++-..+...+.....|.. +.++-||++|+|||++.
T Consensus 463 ~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 463 QDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp CHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHH
Confidence 34444444444444445543 57999999999999863
No 141
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=43.87 E-value=9 Score=40.22 Aligned_cols=26 Identities=19% Similarity=0.445 Sum_probs=19.8
Q ss_pred HHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 73 PVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 73 PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
..+..++.|.+ ++..++||+|||.+.
T Consensus 37 ~~i~~~~~~~~--~lv~a~TGsGKT~~~ 62 (391)
T 1xti_A 37 ECIPQAILGMD--VLCQAKSGMGKTAVF 62 (391)
T ss_dssp HHHHHHTTTCC--EEEECSSCSSHHHHH
T ss_pred HHHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 35567778877 566789999999764
No 142
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=43.81 E-value=43 Score=28.99 Aligned_cols=35 Identities=11% Similarity=0.172 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 002847 349 VSMKNLQQKMKKIEEERLRVRGEIENLSEKLEALT 383 (874)
Q Consensus 349 ~~~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~ 383 (874)
..+..|+++...++.|+..|+.+++.|+.+|..+.
T Consensus 47 ~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 47 EYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35677888888888888888888888888887654
No 143
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=43.70 E-value=11 Score=39.96 Aligned_cols=44 Identities=20% Similarity=0.317 Sum_probs=26.7
Q ss_pred EeceeeCCCCChHHHHHhhHHHHHHhh-cC-CCeeEEEeccCCCCcceec
Q 002847 53 SFDKVFHPGSSQDEVFSEVEPVIKSVL-DG-YNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 53 ~FD~VF~~~asQeeVF~~V~PlV~svL-dG-yN~TIfAYGQTGSGKTyTM 100 (874)
.|+.+++ |+.+.+.+.-.|.... .| .-..++-||++|+|||+.+
T Consensus 23 ~l~~~~g----~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 23 SLDEFIG----QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp SGGGCCS----CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHH
T ss_pred cHHHccC----cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHH
Confidence 5666665 4556555544444321 12 2234677999999999875
No 144
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=43.24 E-value=23 Score=30.54 Aligned_cols=37 Identities=24% Similarity=0.321 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002847 346 QKEVSMKNLQQKMKKIEEERLRVRGEIENLSEKLEAL 382 (874)
Q Consensus 346 ~k~~~~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l 382 (874)
.++..++.|+.++..|+.+...+..|++.|+..+..|
T Consensus 26 RK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L 62 (70)
T 1gd2_E 26 RKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQL 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444566666666666665555555555555555444
No 145
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.66 E-value=14 Score=42.17 Aligned_cols=74 Identities=22% Similarity=0.348 Sum_probs=44.8
Q ss_pred eEeceeeCCCCChHHHHHhh-HHHHH-Hhhc--C--CCeeEEEeccCCCCcceecc--------------CC---CCCCC
Q 002847 52 YSFDKVFHPGSSQDEVFSEV-EPVIK-SVLD--G--YNACIFAYGQTGTGKSFTME--------------GT---PDSPG 108 (874)
Q Consensus 52 F~FD~VF~~~asQeeVF~~V-~PlV~-svLd--G--yN~TIfAYGQTGSGKTyTM~--------------Gs---~e~~G 108 (874)
-+||.|-+-+.--+++.+.| .|+.. ..+. | .--.|+-||++|+|||+..- |+ ....|
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vG 285 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVG 285 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSS
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCC
Confidence 45666655433333333333 34331 2332 3 34569999999999997541 11 23458
Q ss_pred cHHHHHHHHHHHHHhcC
Q 002847 109 IVPRAIEAIFKQAMESN 125 (874)
Q Consensus 109 IIPRaledLF~~i~e~~ 125 (874)
--.+.++++|..+....
T Consensus 286 esek~ir~lF~~Ar~~a 302 (467)
T 4b4t_H 286 EGARMVRELFEMARTKK 302 (467)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 88999999999876543
No 146
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=42.60 E-value=12 Score=45.14 Aligned_cols=37 Identities=30% Similarity=0.437 Sum_probs=25.2
Q ss_pred hHHHHHhhHHHHHHhhcCCC------eeEEEeccCCCCcceec
Q 002847 64 QDEVFSEVEPVIKSVLDGYN------ACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 64 QeeVF~~V~PlV~svLdGyN------~TIfAYGQTGSGKTyTM 100 (874)
|......+...|..+..|.. +.|+-||++|+|||+..
T Consensus 563 ~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 563 QDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELA 605 (854)
T ss_dssp CHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHH
T ss_pred cHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHH
Confidence 45555555555555554432 68999999999999763
No 147
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=42.60 E-value=9.5 Score=43.70 Aligned_cols=20 Identities=25% Similarity=0.483 Sum_probs=16.3
Q ss_pred hcCCCeeEEEeccCCCCcceec
Q 002847 79 LDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 79 LdGyN~TIfAYGQTGSGKTyTM 100 (874)
-.|.+ |...|+||||||.+|
T Consensus 258 ~~g~~--i~I~GptGSGKTTlL 277 (511)
T 2oap_1 258 EHKFS--AIVVGETASGKTTTL 277 (511)
T ss_dssp HTTCC--EEEEESTTSSHHHHH
T ss_pred hCCCE--EEEECCCCCCHHHHH
Confidence 36766 677899999999986
No 148
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=41.97 E-value=6.4 Score=41.21 Aligned_cols=17 Identities=24% Similarity=0.434 Sum_probs=14.5
Q ss_pred eeEEEeccCCCCcceec
Q 002847 84 ACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 84 ~TIfAYGQTGSGKTyTM 100 (874)
..|+-||++|+|||+.+
T Consensus 47 ~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSV 63 (331)
T ss_dssp CCEEEESCCCHHHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 35788999999999875
No 149
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=41.57 E-value=10 Score=37.19 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=21.2
Q ss_pred HHHHHhhcC-C--CeeEEEeccCCCCcceec
Q 002847 73 PVIKSVLDG-Y--NACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 73 PlV~svLdG-y--N~TIfAYGQTGSGKTyTM 100 (874)
+-++.++.| . ...+.-+|++|+|||..+
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~ 41 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQIC 41 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHH
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHH
Confidence 456777754 2 456788999999999875
No 150
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=41.47 E-value=6.7 Score=47.30 Aligned_cols=43 Identities=30% Similarity=0.439 Sum_probs=27.7
Q ss_pred EeceeeCCCCChHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCcceeccC
Q 002847 53 SFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEG 102 (874)
Q Consensus 53 ~FD~VF~~~asQeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM~G 102 (874)
.||.|.+. ++. +..+++.+..+....++-||++|+|||+.+.+
T Consensus 168 ~ld~viGr----~~~---i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~ 210 (854)
T 1qvr_A 168 KLDPVIGR----DEE---IRRVIQILLRRTKNNPVLIGEPGVGKTAIVEG 210 (854)
T ss_dssp CSCCCCSC----HHH---HHHHHHHHHCSSCCCCEEEECTTSCHHHHHHH
T ss_pred CCcccCCc----HHH---HHHHHHHHhcCCCCceEEEcCCCCCHHHHHHH
Confidence 46666553 322 44455544555555678899999999987643
No 151
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=40.69 E-value=50 Score=31.75 Aligned_cols=42 Identities=12% Similarity=0.310 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH
Q 002847 351 MKNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQEQ 392 (874)
Q Consensus 351 ~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~lqeq 392 (874)
++.+.+++..|..++..++.+++.++.+++++++....++.+
T Consensus 84 l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~ 125 (138)
T 3hnw_A 84 IENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKN 125 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444443
No 152
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=40.67 E-value=8.5 Score=41.28 Aligned_cols=18 Identities=33% Similarity=0.615 Sum_probs=15.3
Q ss_pred CeeEEEeccCCCCcceec
Q 002847 83 NACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 83 N~TIfAYGQTGSGKTyTM 100 (874)
...|+-||++|+|||+..
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 457899999999999864
No 153
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=40.59 E-value=10 Score=42.72 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=20.1
Q ss_pred HHHHhhcCCCeeEEEeccCCCCccee
Q 002847 74 VIKSVLDGYNACIFAYGQTGTGKSFT 99 (874)
Q Consensus 74 lV~svLdGyN~TIfAYGQTGSGKTyT 99 (874)
.+..+++|.+..++..++||||||.+
T Consensus 149 ai~~i~~~~~~~~ll~apTGsGKT~~ 174 (508)
T 3fho_A 149 ALPLLLSNPPRNMIGQSQSGTGKTAA 174 (508)
T ss_dssp SHHHHHCSSCCCEEEECCSSTTSHHH
T ss_pred HHHHHHcCCCCCEEEECCCCccHHHH
Confidence 34667777445678889999999987
No 154
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=40.53 E-value=11 Score=41.57 Aligned_cols=25 Identities=28% Similarity=0.587 Sum_probs=19.2
Q ss_pred HHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 74 VIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 74 lV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
++..++.|.| ++..++||||||.+.
T Consensus 15 ~i~~~~~~~~--~l~~~~tGsGKT~~~ 39 (556)
T 4a2p_A 15 LAQPAINGKN--ALICAPTGSGKTFVS 39 (556)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHcCCC--EEEEcCCCChHHHHH
Confidence 4566678877 567789999999774
No 155
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=39.99 E-value=14 Score=41.41 Aligned_cols=27 Identities=37% Similarity=0.589 Sum_probs=21.3
Q ss_pred HHHHHhhcCCCeeEEEeccCCCCccee
Q 002847 73 PVIKSVLDGYNACIFAYGQTGTGKSFT 99 (874)
Q Consensus 73 PlV~svLdGyN~TIfAYGQTGSGKTyT 99 (874)
.++..++.|-+--+++.++||||||.+
T Consensus 101 ~~i~~~l~~~~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 101 KTIKPILSSEDHDVIARAKTGTGKTFA 127 (563)
T ss_dssp HHHHHHHSSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHHhcCCCCeEEEECCCCCCccHH
Confidence 356677766566788999999999986
No 156
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=39.76 E-value=50 Score=28.83 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002847 349 VSMKNLQQKMKKIEEERLRVRGEIENLSEKLEAL 382 (874)
Q Consensus 349 ~~~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l 382 (874)
..+..|+++...++.|...++.+++.|+.+|++|
T Consensus 47 ~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~l 80 (80)
T 1nlw_A 47 LHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEKL 80 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3467788888888888888888888888887653
No 157
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=39.33 E-value=27 Score=28.61 Aligned_cols=33 Identities=18% Similarity=0.363 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002847 345 DQKEVSMKNLQQKMKKIEEERLRVRGEIENLSE 377 (874)
Q Consensus 345 ~~k~~~~~~Lqqkik~LeeE~~~lr~EIe~Lk~ 377 (874)
..+...+..|+.++..|+.|+..|+.++..|+.
T Consensus 18 ~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 18 RKKKEYVKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445666666666666666666666665554
No 158
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=39.21 E-value=7.1 Score=40.04 Aligned_cols=25 Identities=16% Similarity=0.074 Sum_probs=17.4
Q ss_pred HHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 74 VIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 74 lV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
.+..++.|.++ +..++||||||.+.
T Consensus 121 ai~~~l~~~~~--ll~~~tGsGKT~~~ 145 (282)
T 1rif_A 121 AVFEGLVNRRR--ILNLPTSAGRSLIQ 145 (282)
T ss_dssp HHHHHHHHSEE--EECCCTTSCHHHHH
T ss_pred HHHHHHhcCCe--EEEcCCCCCcHHHH
Confidence 44555556444 33899999999875
No 159
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=39.19 E-value=14 Score=40.58 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=20.3
Q ss_pred HHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 73 PVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 73 PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
..+..++.|.+ +++.++||||||...
T Consensus 85 ~ai~~i~~g~d--~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 85 CSIPVISSGRD--LMACAQTGSGKTAAF 110 (434)
T ss_dssp HHHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHHhcCCC--EEEECCCCCCchHHH
Confidence 35666788877 577789999999863
No 160
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=38.87 E-value=42 Score=30.89 Aligned_cols=33 Identities=30% Similarity=0.402 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002847 350 SMKNLQQKMKKIEEERLRVRGEIENLSEKLEAL 382 (874)
Q Consensus 350 ~~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l 382 (874)
.+..+.+++..|+.|+.+|+++++.|+.+|+..
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~ 45 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERR 45 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999999999999999998873
No 161
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=38.83 E-value=11 Score=43.87 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=18.6
Q ss_pred HHHhhcCCCeeEEEeccCCCCcceecc
Q 002847 75 IKSVLDGYNACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 75 V~svLdGyN~TIfAYGQTGSGKTyTM~ 101 (874)
|..++. +..++..|++|||||+|+.
T Consensus 158 i~~~l~--~~~~vi~G~pGTGKTt~l~ 182 (608)
T 1w36_D 158 AAVALT--RRISVISGGPGTGKTTTVA 182 (608)
T ss_dssp HHHHHT--BSEEEEECCTTSTHHHHHH
T ss_pred HHHHhc--CCCEEEEeCCCCCHHHHHH
Confidence 344454 3567899999999999864
No 162
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=38.38 E-value=13 Score=41.36 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=24.0
Q ss_pred CCChHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 61 GSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 61 ~asQeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
+..|.+.+..+. ..+..| ...++..|..|||||+++
T Consensus 27 n~~Q~~av~~~~---~~i~~~-~~~~li~G~aGTGKT~ll 62 (459)
T 3upu_A 27 TEGQKNAFNIVM---KAIKEK-KHHVTINGPAGTGATTLT 62 (459)
T ss_dssp CHHHHHHHHHHH---HHHHSS-SCEEEEECCTTSCHHHHH
T ss_pred CHHHHHHHHHHH---HHHhcC-CCEEEEEeCCCCCHHHHH
Confidence 446777765543 222333 347899999999999875
No 163
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=38.36 E-value=11 Score=38.88 Aligned_cols=26 Identities=35% Similarity=0.446 Sum_probs=18.3
Q ss_pred HHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 74 VIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 74 lV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
.+..+++|.. .++..++||||||.+.
T Consensus 36 ~i~~~~~~~~-~~l~~~~TGsGKT~~~ 61 (367)
T 1hv8_A 36 VIPLFLNDEY-NIVAQARTGSGKTASF 61 (367)
T ss_dssp HHHHHHHTCS-EEEEECCSSSSHHHHH
T ss_pred HHHHHhCCCC-CEEEECCCCChHHHHH
Confidence 3455666643 3567799999999874
No 164
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=38.30 E-value=13 Score=40.93 Aligned_cols=25 Identities=28% Similarity=0.415 Sum_probs=18.7
Q ss_pred HHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 74 VIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 74 lV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
.+..++.|.| ++..++||||||.+.
T Consensus 12 ~i~~~~~~~~--~l~~~~tGsGKT~~~ 36 (555)
T 3tbk_A 12 LALPAKKGKN--TIICAPTGCGKTFVS 36 (555)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEEeCCCChHHHHH
Confidence 3455678876 466789999999763
No 165
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=37.93 E-value=13 Score=41.64 Aligned_cols=42 Identities=24% Similarity=0.312 Sum_probs=26.3
Q ss_pred EeceeeCCCCChHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCcceecc
Q 002847 53 SFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 53 ~FD~VF~~~asQeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM~ 101 (874)
.||.|.+ +++.. ..++..+-.+....++-||++|+|||+...
T Consensus 178 ~ld~iiG----r~~~i---~~l~~~l~r~~~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 178 SLDPVIG----RSKEI---QRVIEVLSRRTKNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp CSCCCCC----CHHHH---HHHHHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred CCCCccC----cHHHH---HHHHHHHhccCCCCeEEECCCCCCHHHHHH
Confidence 4565554 33333 334444444555677889999999998754
No 166
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=37.78 E-value=13 Score=37.88 Aligned_cols=34 Identities=21% Similarity=0.409 Sum_probs=21.5
Q ss_pred hHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 64 QDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 64 QeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
|+++.+.+...+ -.|.-..++-||+.|+|||+..
T Consensus 26 ~~~~~~~l~~~l---~~~~~~~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 26 NKETIDRLQQIA---KDGNMPHMIISGMPGIGKTTSV 59 (323)
T ss_dssp CTHHHHHHHHHH---HSCCCCCEEEECSTTSSHHHHH
T ss_pred CHHHHHHHHHHH---HcCCCCeEEEECcCCCCHHHHH
Confidence 445544443333 3444333899999999999864
No 167
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=37.75 E-value=37 Score=32.04 Aligned_cols=39 Identities=21% Similarity=0.384 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q 002847 355 QQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQEQL 393 (874)
Q Consensus 355 qqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~lqeql 393 (874)
+.++++|+.|+..|.++++....++++|.+....+...+
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHh
Confidence 455777777777777777777777777776665554443
No 168
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=37.72 E-value=8.3 Score=43.69 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=15.4
Q ss_pred CeeEEEeccCCCCcceec
Q 002847 83 NACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 83 N~TIfAYGQTGSGKTyTM 100 (874)
...++-||++|+|||++.
T Consensus 77 ~~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 357899999999999875
No 169
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=37.52 E-value=7.6 Score=40.76 Aligned_cols=26 Identities=35% Similarity=0.606 Sum_probs=19.7
Q ss_pred HHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 73 PVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 73 PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
..+..++.|.+ ++..++||||||.+.
T Consensus 50 ~~i~~i~~~~~--~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 50 RAIMPIIEGHD--VLAQAQSGTGKTGTF 75 (394)
T ss_dssp HHHHHHHHTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHHhCCCC--EEEECCCCChHHHHH
Confidence 34566777876 567789999999873
No 170
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=37.48 E-value=18 Score=42.05 Aligned_cols=25 Identities=32% Similarity=0.492 Sum_probs=20.0
Q ss_pred HHHHHhhcCCCeeEEEeccCCCCccee
Q 002847 73 PVIKSVLDGYNACIFAYGQTGTGKSFT 99 (874)
Q Consensus 73 PlV~svLdGyN~TIfAYGQTGSGKTyT 99 (874)
.+|..++.|.+ +++.++||+|||.+
T Consensus 51 ~~i~~il~g~d--~lv~~pTGsGKTl~ 75 (591)
T 2v1x_A 51 ETINVTMAGKE--VFLVMPTGGGKSLC 75 (591)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCTTHH
T ss_pred HHHHHHHcCCC--EEEEECCCChHHHH
Confidence 35667788888 57788999999975
No 171
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=37.42 E-value=40 Score=27.51 Aligned_cols=30 Identities=20% Similarity=0.303 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002847 351 MKNLQQKMKKIEEERLRVRGEIENLSEKLE 380 (874)
Q Consensus 351 ~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le 380 (874)
+..|+.++.+|+.++..|+.++++|+.+|+
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555555555555543
No 172
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=37.21 E-value=50 Score=26.01 Aligned_cols=32 Identities=28% Similarity=0.424 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 002847 353 NLQQKMKKIEEERLRVRGEIENLSEKLEALTR 384 (874)
Q Consensus 353 ~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~ 384 (874)
+|-++|.++..|+...+++|.+|+.++.+|..
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888888888888888888888877654
No 173
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=37.10 E-value=12 Score=36.07 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=19.5
Q ss_pred HHHHHhhc-CC--CeeEEEeccCCCCcceec
Q 002847 73 PVIKSVLD-GY--NACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 73 PlV~svLd-Gy--N~TIfAYGQTGSGKTyTM 100 (874)
+.++.++. |. ...+.-+|++|||||+.+
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHH
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHH
Confidence 34566665 33 245667899999999875
No 174
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=36.87 E-value=11 Score=43.08 Aligned_cols=23 Identities=13% Similarity=0.300 Sum_probs=18.2
Q ss_pred hcCCCeeEEEeccCCCCcceecc
Q 002847 79 LDGYNACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 79 LdGyN~TIfAYGQTGSGKTyTM~ 101 (874)
+.-.++.++..|..|||||+|+.
T Consensus 18 v~~~~~~~lV~a~aGsGKT~~l~ 40 (647)
T 3lfu_A 18 VAAPRSNLLVLAGAGSGKTRVLV 40 (647)
T ss_dssp HTCCSSCEEEEECTTSCHHHHHH
T ss_pred HhCCCCCEEEEECCCCCHHHHHH
Confidence 33446778899999999999963
No 175
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=36.74 E-value=13 Score=43.37 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=18.7
Q ss_pred HHHHhhcCCCeeEEEeccCCCCcceecc
Q 002847 74 VIKSVLDGYNACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 74 lV~svLdGyN~TIfAYGQTGSGKTyTM~ 101 (874)
.|..++. +..++..|++|||||+|+.
T Consensus 188 av~~~l~--~~~~li~GppGTGKT~~~~ 213 (624)
T 2gk6_A 188 AVKTVLQ--RPLSLIQGPPGTGKTVTSA 213 (624)
T ss_dssp HHHHHHT--CSEEEEECCTTSCHHHHHH
T ss_pred HHHHHhc--CCCeEEECCCCCCHHHHHH
Confidence 4455554 3456789999999999864
No 176
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=36.70 E-value=11 Score=41.97 Aligned_cols=46 Identities=22% Similarity=0.360 Sum_probs=27.5
Q ss_pred eeEeceeeCCCCChHHHHHhhHHHHH------HhhcC---CCeeEEEeccCCCCcceec
Q 002847 51 NYSFDKVFHPGSSQDEVFSEVEPVIK------SVLDG---YNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 51 ~F~FD~VF~~~asQeeVF~~V~PlV~------svLdG---yN~TIfAYGQTGSGKTyTM 100 (874)
...||.|.+ ++++-+.+...|. .++.| ....|+-||++|+|||+..
T Consensus 130 ~~~~~di~G----~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 130 NVKWSDVAG----LEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCGGGSCS----CHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCHHHhcC----HHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 356677655 3445444433331 22232 2356899999999999864
No 177
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=36.67 E-value=23 Score=38.13 Aligned_cols=18 Identities=33% Similarity=0.479 Sum_probs=15.0
Q ss_pred CeeEEEeccCCCCcceec
Q 002847 83 NACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 83 N~TIfAYGQTGSGKTyTM 100 (874)
...|.-.|++|+|||.++
T Consensus 129 g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346778899999999886
No 178
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=36.30 E-value=14 Score=35.64 Aligned_cols=28 Identities=25% Similarity=0.463 Sum_probs=21.3
Q ss_pred HHHHHhhc-CC--CeeEEEeccCCCCcceec
Q 002847 73 PVIKSVLD-GY--NACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 73 PlV~svLd-Gy--N~TIfAYGQTGSGKTyTM 100 (874)
+-++.++. |+ ...+.-+|++|+|||..+
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~ 37 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLA 37 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHH
Confidence 45677775 55 356889999999999875
No 179
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=36.29 E-value=15 Score=41.67 Aligned_cols=20 Identities=35% Similarity=0.542 Sum_probs=16.3
Q ss_pred CCCeeEEEeccCCCCcceec
Q 002847 81 GYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 81 GyN~TIfAYGQTGSGKTyTM 100 (874)
.....|+-||++|+|||+..
T Consensus 236 ~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHH
T ss_pred CCCCcEEEECcCCCCHHHHH
Confidence 44567999999999999854
No 180
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=35.70 E-value=31 Score=28.15 Aligned_cols=30 Identities=23% Similarity=0.333 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHcCChhhHHHHHh
Q 002847 365 RLRVRGEIENLSEKLEALTRPAHSFQEQLE 394 (874)
Q Consensus 365 ~~~lr~EIe~Lk~~Le~l~~~~~~lqeql~ 394 (874)
...|+.|+++|+.+++.|..+...+..+++
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444445555555544444444444443
No 181
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=35.62 E-value=23 Score=37.58 Aligned_cols=17 Identities=35% Similarity=0.601 Sum_probs=14.6
Q ss_pred eeEEEeccCCCCcceec
Q 002847 84 ACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 84 ~TIfAYGQTGSGKTyTM 100 (874)
..+.-.|++|||||.++
T Consensus 101 ~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 36778899999999986
No 182
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=35.29 E-value=14 Score=40.54 Aligned_cols=25 Identities=20% Similarity=0.135 Sum_probs=18.6
Q ss_pred HHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 74 VIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 74 lV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
.|..+++|.+ ++..++||+|||.+.
T Consensus 101 ai~~i~~~~~--~ll~~~TGsGKT~~~ 125 (472)
T 2fwr_A 101 ALERWLVDKR--GCIVLPTGSGKTHVA 125 (472)
T ss_dssp HHHHHTTTTE--EEEECCTTSCHHHHH
T ss_pred HHHHHHhcCC--EEEEeCCCCCHHHHH
Confidence 4455666654 667789999999874
No 183
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=34.95 E-value=19 Score=40.97 Aligned_cols=47 Identities=26% Similarity=0.424 Sum_probs=29.5
Q ss_pred ceeEeceeeCCCCChHHHHHhhHHHHHHh-----hcC----CCeeEEEeccCCCCcceec
Q 002847 50 KNYSFDKVFHPGSSQDEVFSEVEPVIKSV-----LDG----YNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 50 k~F~FD~VF~~~asQeeVF~~V~PlV~sv-----LdG----yN~TIfAYGQTGSGKTyTM 100 (874)
...+|+.|.+. +++-..+..++..+ +.. ....|+-||++|+|||+.+
T Consensus 11 ~~~~f~di~G~----~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 11 KRVTFKDVGGA----EEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCCGGGCCSC----HHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCc----HHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 35678877664 45555555554432 111 2345999999999999864
No 184
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=34.60 E-value=84 Score=23.92 Aligned_cols=31 Identities=16% Similarity=0.389 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002847 351 MKNLQQKMKKIEEERLRVRGEIENLSEKLEA 381 (874)
Q Consensus 351 ~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~ 381 (874)
|.+|+.++++|-.+...|..|++.|++.+.+
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 4566666666666666677777777666544
No 185
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=34.56 E-value=30 Score=35.07 Aligned_cols=29 Identities=28% Similarity=0.448 Sum_probs=20.0
Q ss_pred hHHHHHHhhcCCC-----eeEEEeccCCCCccee
Q 002847 71 VEPVIKSVLDGYN-----ACIFAYGQTGTGKSFT 99 (874)
Q Consensus 71 V~PlV~svLdGyN-----~TIfAYGQTGSGKTyT 99 (874)
...++..++.|+. ..|+..|++|||||+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTl 48 (253)
T 2p5t_B 15 LARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTI 48 (253)
T ss_dssp HHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHH
T ss_pred HHHHHHHHHccCCcccCCeEEEEECCCCCCHHHH
Confidence 3445555555443 4688999999999974
No 186
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=34.38 E-value=15 Score=42.45 Aligned_cols=25 Identities=36% Similarity=0.464 Sum_probs=19.5
Q ss_pred HHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 74 VIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 74 lV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
+|..+++|.+ ++..++||+|||.+.
T Consensus 15 ~i~~il~g~~--~ll~~~TGsGKTl~~ 39 (699)
T 4gl2_A 15 VAQPALEGKN--IIICLPTGCGKTRVA 39 (699)
T ss_dssp HHHHHHSSCC--EEECCCTTSCHHHHH
T ss_pred HHHHHHhCCC--EEEEcCCCCcHHHHH
Confidence 4566677876 577899999999864
No 187
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=34.13 E-value=12 Score=34.21 Aligned_cols=15 Identities=40% Similarity=0.512 Sum_probs=12.8
Q ss_pred eEEEeccCCCCccee
Q 002847 85 CIFAYGQTGTGKSFT 99 (874)
Q Consensus 85 TIfAYGQTGSGKTyT 99 (874)
.|+-.|.+|||||+.
T Consensus 3 ~I~l~G~~GsGKsT~ 17 (179)
T 3lw7_A 3 VILITGMPGSGKSEF 17 (179)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 477889999999974
No 188
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=33.21 E-value=18 Score=35.08 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=20.5
Q ss_pred HHHHHhhc-CC--CeeEEEeccCCCCcceec
Q 002847 73 PVIKSVLD-GY--NACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 73 PlV~svLd-Gy--N~TIfAYGQTGSGKTyTM 100 (874)
+-++.++. |. ...+.-+|++|||||..+
T Consensus 12 ~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 12 KSLDKLLGGGIETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp HHHHHHTTSSEESSEEEEEEESTTSSHHHHH
T ss_pred hhHHhHhcCCCCCCcEEEEECCCCCCHHHHH
Confidence 45567774 43 346788899999999875
No 189
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=32.37 E-value=20 Score=41.34 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=18.4
Q ss_pred HHHHhhcCCCeeEEEeccCCCCccee
Q 002847 74 VIKSVLDGYNACIFAYGQTGTGKSFT 99 (874)
Q Consensus 74 lV~svLdGyN~TIfAYGQTGSGKTyT 99 (874)
+|..++.|.| ++..++||||||..
T Consensus 21 ~i~~~l~g~~--~iv~~~TGsGKTl~ 44 (696)
T 2ykg_A 21 LALPAMKGKN--TIICAPTGCGKTFV 44 (696)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHHcCCC--EEEEcCCCchHHHH
Confidence 3455677877 46778999999985
No 190
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=32.17 E-value=46 Score=23.42 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002847 360 KIEEERLRVRGEIENLSEKLEAL 382 (874)
Q Consensus 360 ~LeeE~~~lr~EIe~Lk~~Le~l 382 (874)
.|...+.++++||..|+-++..+
T Consensus 4 rlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 4 RLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHh
Confidence 34444555666666666555544
No 191
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=32.17 E-value=58 Score=23.70 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002847 353 NLQQKMKKIEEERLRVRGEIENL 375 (874)
Q Consensus 353 ~Lqqkik~LeeE~~~lr~EIe~L 375 (874)
.|++++..|++|+..++-||..|
T Consensus 6 alkqeiaalkkeiaalkfeiaal 28 (33)
T 4dzn_A 6 ALKQEIAALKKEIAALKFEIAAL 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 192
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=32.05 E-value=24 Score=40.45 Aligned_cols=47 Identities=17% Similarity=0.339 Sum_probs=29.3
Q ss_pred ceeEeceeeCCCCChHHHHHhhHHHHHHh-----hcCC----CeeEEEeccCCCCcceec
Q 002847 50 KNYSFDKVFHPGSSQDEVFSEVEPVIKSV-----LDGY----NACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 50 k~F~FD~VF~~~asQeeVF~~V~PlV~sv-----LdGy----N~TIfAYGQTGSGKTyTM 100 (874)
..++||.|.+. +++-..+..++..+ +..+ ...|+-||++|+|||+.+
T Consensus 26 ~~~~f~dv~G~----~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 26 PKVTFKDVAGA----EEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CCCCTTSSCSC----HHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCHHHcCCc----HHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHH
Confidence 45678877664 44544455444432 2222 234899999999999864
No 193
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=31.88 E-value=16 Score=38.63 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=18.5
Q ss_pred HHHHhhcCCCeeEEEeccCCCCcceecc
Q 002847 74 VIKSVLDGYNACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 74 lV~svLdGyN~TIfAYGQTGSGKTyTM~ 101 (874)
.+..+++| .++..++||+|||.+..
T Consensus 17 ~i~~~~~~---~~ll~~~tG~GKT~~~~ 41 (494)
T 1wp9_A 17 IYAKCKET---NCLIVLPTGLGKTLIAM 41 (494)
T ss_dssp HHHHGGGS---CEEEECCTTSCHHHHHH
T ss_pred HHHHHhhC---CEEEEcCCCCCHHHHHH
Confidence 45667777 44566899999998753
No 194
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=31.85 E-value=23 Score=40.29 Aligned_cols=27 Identities=37% Similarity=0.589 Sum_probs=20.7
Q ss_pred HHHHHhhcCCCeeEEEeccCCCCccee
Q 002847 73 PVIKSVLDGYNACIFAYGQTGTGKSFT 99 (874)
Q Consensus 73 PlV~svLdGyN~TIfAYGQTGSGKTyT 99 (874)
.+|..++.|-+.-+++.++||||||.+
T Consensus 50 ~~i~~il~~~~~dvlv~apTGsGKTl~ 76 (579)
T 3sqw_A 50 KTIKPILSSEDHDVIARAKTGTGKTFA 76 (579)
T ss_dssp HHHHHHHCSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHHHccCCCeEEEEcCCCcHHHHH
Confidence 356677755555678889999999986
No 195
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=31.69 E-value=12 Score=35.71 Aligned_cols=17 Identities=29% Similarity=0.477 Sum_probs=14.1
Q ss_pred eEEEeccCCCCcceecc
Q 002847 85 CIFAYGQTGTGKSFTME 101 (874)
Q Consensus 85 TIfAYGQTGSGKTyTM~ 101 (874)
.+.-.|++|||||+.+-
T Consensus 11 i~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46678999999998864
No 196
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=31.52 E-value=26 Score=41.23 Aligned_cols=46 Identities=26% Similarity=0.471 Sum_probs=32.0
Q ss_pred eEeceeeCCCCChHHHHHhhHHHHHHhhcCCCeeEEEeccCCCCcceeccC
Q 002847 52 YSFDKVFHPGSSQDEVFSEVEPVIKSVLDGYNACIFAYGQTGTGKSFTMEG 102 (874)
Q Consensus 52 F~FD~VF~~~asQeeVF~~V~PlV~svLdGyN~TIfAYGQTGSGKTyTM~G 102 (874)
|.+.. |.|...|..-+.. +++.+-.|... ....|.||||||+||..
T Consensus 2 ~~~~~-~~~~~~q~~ai~~---l~~~~~~~~~~-~~l~g~tgs~kt~~~a~ 47 (664)
T 1c4o_A 2 FRYRG-PSPKGDQPKAIAG---LVEALRDGERF-VTLLGATGTGKTVTMAK 47 (664)
T ss_dssp CCCCS-CCCCTTHHHHHHH---HHHHHHTTCSE-EEEEECTTSCHHHHHHH
T ss_pred CCCCC-CCCCCCChHHHHH---HHHHHhcCCCc-EEEEcCCCcHHHHHHHH
Confidence 55555 4788888777654 45565666533 34679999999999963
No 197
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=30.45 E-value=13 Score=39.23 Aligned_cols=24 Identities=33% Similarity=0.602 Sum_probs=16.5
Q ss_pred HhhcCCCeeEEEeccCCCCcceec
Q 002847 77 SVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 77 svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
.+++|++..|...|++|+|||..|
T Consensus 12 ~~l~~~~~~I~lvG~nG~GKSTLl 35 (301)
T 2qnr_A 12 SVKKGFEFTLMVVGESGLGKSTLI 35 (301)
T ss_dssp ------CEEEEEEEETTSSHHHHH
T ss_pred EEEcCCCEEEEEECCCCCCHHHHH
Confidence 368899999999999999999754
No 198
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=30.36 E-value=1.2e+02 Score=26.72 Aligned_cols=36 Identities=28% Similarity=0.284 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 002847 349 VSMKNLQQKMKKIEEERLRVRGEIENLSEKLEALTR 384 (874)
Q Consensus 349 ~~~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~ 384 (874)
..+..|+.+...++.+...++.+.+.|+.+|++|..
T Consensus 52 ~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~~ 87 (88)
T 1nkp_A 52 AYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLGG 87 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 356778888888888888888888888888887754
No 199
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=30.32 E-value=18 Score=35.41 Aligned_cols=26 Identities=27% Similarity=0.548 Sum_probs=18.8
Q ss_pred HHHhhcC-C--CeeEEEeccCCCCcceec
Q 002847 75 IKSVLDG-Y--NACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 75 V~svLdG-y--N~TIfAYGQTGSGKTyTM 100 (874)
++.++.| + ...+.-+|++|+|||..+
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~ 40 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFS 40 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHH
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHH
Confidence 4566543 3 346788999999999874
No 200
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=30.04 E-value=69 Score=26.31 Aligned_cols=40 Identities=10% Similarity=0.133 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q 002847 354 LQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQEQL 393 (874)
Q Consensus 354 Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~lqeql 393 (874)
-.+.+..|+.+...+..+...|+.++..|..+...+...+
T Consensus 20 Kk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 20 RKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566777777777777777777777766665555443
No 201
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=29.85 E-value=90 Score=22.71 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 002847 357 KMKKIEEERLRVRGEIENLSEKLEALT 383 (874)
Q Consensus 357 kik~LeeE~~~lr~EIe~Lk~~Le~l~ 383 (874)
++..|+.|+..+++||..|+-++..++
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666667777777766666543
No 202
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=29.83 E-value=20 Score=35.97 Aligned_cols=25 Identities=20% Similarity=0.514 Sum_probs=17.3
Q ss_pred HHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 74 VIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 74 lV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
+++.+-.|-- +.-.|+.|||||+.+
T Consensus 15 ~l~~i~~Ge~--~~liG~nGsGKSTLl 39 (208)
T 3b85_A 15 YVDAIDTNTI--VFGLGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHHCSE--EEEECCTTSSTTHHH
T ss_pred HHHhccCCCE--EEEECCCCCCHHHHH
Confidence 4455545554 445799999999875
No 203
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=29.82 E-value=81 Score=27.43 Aligned_cols=28 Identities=18% Similarity=0.455 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002847 355 QQKMKKIEEERLRVRGEIENLSEKLEAL 382 (874)
Q Consensus 355 qqkik~LeeE~~~lr~EIe~Lk~~Le~l 382 (874)
.+++++++.++..|++.+..|+..|+.-
T Consensus 6 ~~kLq~~E~~N~~Le~~v~~le~~Le~s 33 (72)
T 3cve_A 6 HMKLQEVEIRNKDLEGQLSEMEQRLEKS 33 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555443
No 204
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=29.79 E-value=24 Score=34.53 Aligned_cols=29 Identities=21% Similarity=0.195 Sum_probs=18.8
Q ss_pred HHHHHHhhc--CCCeeEEEeccCCCCcceec
Q 002847 72 EPVIKSVLD--GYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 72 ~PlV~svLd--GyN~TIfAYGQTGSGKTyTM 100 (874)
..+++.+.. +-.-.|.-.|++|||||+.+
T Consensus 9 ~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 9 QGVLERLDPRQPGRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp HHHHHHSCTTCCSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 344444442 33456667899999999864
No 205
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=29.73 E-value=1.2e+02 Score=26.85 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002847 353 NLQQKMKKIEEERLRVRGEIEN 374 (874)
Q Consensus 353 ~Lqqkik~LeeE~~~lr~EIe~ 374 (874)
-|+.++.+|++++..+..+.+.
T Consensus 24 lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 24 LLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 206
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=29.69 E-value=13 Score=40.29 Aligned_cols=18 Identities=39% Similarity=0.527 Sum_probs=14.2
Q ss_pred CeeEEEeccCCCCcceec
Q 002847 83 NACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 83 N~TIfAYGQTGSGKTyTM 100 (874)
|..++..|+||||||+++
T Consensus 35 ~~~~~i~G~~G~GKs~~~ 52 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTA 52 (392)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred cCceEEEcCCCCCHHHHH
Confidence 334567799999999876
No 207
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=29.50 E-value=14 Score=41.24 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=19.9
Q ss_pred hhcCCCeeEEEeccCCCCcceec
Q 002847 78 VLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 78 vLdGyN~TIfAYGQTGSGKTyTM 100 (874)
+++|++..|...|++|+|||..|
T Consensus 26 vl~~vsf~I~lvG~sGaGKSTLl 48 (418)
T 2qag_C 26 VKRGFEFTLMVVGESGLGKSTLI 48 (418)
T ss_dssp CC-CCCEEEEEECCTTSSHHHHH
T ss_pred EecCCCEEEEEECCCCCcHHHHH
Confidence 58999999999999999999864
No 208
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=29.33 E-value=25 Score=34.28 Aligned_cols=29 Identities=17% Similarity=0.172 Sum_probs=19.5
Q ss_pred HHHHHHhhc---CCCeeEEEeccCCCCcceec
Q 002847 72 EPVIKSVLD---GYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 72 ~PlV~svLd---GyN~TIfAYGQTGSGKTyTM 100 (874)
..+++.++. .....|...|.+|||||+.+
T Consensus 8 ~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 8 DFLCKTILAIKTAGRLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp HHHHHHHHTSCCSSSEEEEEEECTTSSHHHHH
T ss_pred HHHHHHHHHhccCCCeEEEEECCCCCCHHHHH
Confidence 344555543 23456788899999999764
No 209
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=29.30 E-value=35 Score=37.40 Aligned_cols=17 Identities=35% Similarity=0.601 Sum_probs=14.6
Q ss_pred eeEEEeccCCCCcceec
Q 002847 84 ACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 84 ~TIfAYGQTGSGKTyTM 100 (874)
..|.-.|++|||||+++
T Consensus 158 ~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 36778899999999986
No 210
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=29.16 E-value=84 Score=23.93 Aligned_cols=31 Identities=23% Similarity=0.417 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002847 351 MKNLQQKMKKIEEERLRVRGEIENLSEKLEA 381 (874)
Q Consensus 351 ~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~ 381 (874)
|.+|+.++.+|..+...|..|+..|+.-+.+
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 3456666666666666666666666665543
No 211
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=29.13 E-value=19 Score=43.45 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=18.5
Q ss_pred HHHHhhcCCCeeEEEeccCCCCcceecc
Q 002847 74 VIKSVLDGYNACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 74 lV~svLdGyN~TIfAYGQTGSGKTyTM~ 101 (874)
.|..++. +..++..|+.|||||+|+.
T Consensus 368 Av~~~l~--~~~~lI~GppGTGKT~~i~ 393 (802)
T 2xzl_A 368 AVSHVLQ--RPLSLIQGPPGTGKTVTSA 393 (802)
T ss_dssp HHHHHTT--CSEEEEECSTTSSHHHHHH
T ss_pred HHHHHhc--CCCEEEECCCCCCHHHHHH
Confidence 3444444 3346789999999999864
No 212
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=29.10 E-value=23 Score=41.74 Aligned_cols=30 Identities=23% Similarity=0.313 Sum_probs=21.4
Q ss_pred HHHHHHhhcCCCeeEEEeccCCCCcceecc
Q 002847 72 EPVIKSVLDGYNACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 72 ~PlV~svLdGyN~TIfAYGQTGSGKTyTM~ 101 (874)
..+++.+.......++-||++|+|||+.+.
T Consensus 196 ~~l~~~l~~~~~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 196 ERAIQVLCRRRKNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp HHHHHHHTSSSSCEEEEECCTTSSHHHHHH
T ss_pred HHHHHHHhccCCCCeEEEcCCCCCHHHHHH
Confidence 344444445555667889999999998764
No 213
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=29.09 E-value=14 Score=35.35 Aligned_cols=16 Identities=19% Similarity=0.326 Sum_probs=12.8
Q ss_pred eEEEeccCCCCcceec
Q 002847 85 CIFAYGQTGTGKSFTM 100 (874)
Q Consensus 85 TIfAYGQTGSGKTyTM 100 (874)
.|.-.|++|||||+.+
T Consensus 9 ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLV 24 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4556799999999864
No 214
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=28.87 E-value=1.1e+02 Score=22.97 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002847 351 MKNLQQKMKKIEEERLRVRGEIENLSEK 378 (874)
Q Consensus 351 ~~~Lqqkik~LeeE~~~lr~EIe~Lk~~ 378 (874)
|.+|+.++++|-.+...+..|++.|++-
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~l 29 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4455666666666666666666655543
No 215
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=28.80 E-value=29 Score=41.09 Aligned_cols=28 Identities=21% Similarity=0.242 Sum_probs=20.1
Q ss_pred HHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 73 PVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 73 PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
.++..+..+....++-||++|+|||...
T Consensus 191 ~l~~~l~~~~~~~vLL~G~pGtGKT~la 218 (758)
T 3pxi_A 191 RVIEVLSRRTKNNPVLIGEPGVGKTAIA 218 (758)
T ss_dssp HHHHHHHCSSSCEEEEESCTTTTTHHHH
T ss_pred HHHHHHhCCCCCCeEEECCCCCCHHHHH
Confidence 3444444555566899999999999765
No 216
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=28.77 E-value=12 Score=40.82 Aligned_cols=18 Identities=39% Similarity=0.599 Sum_probs=15.7
Q ss_pred CeeEEEeccCCCCcceec
Q 002847 83 NACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 83 N~TIfAYGQTGSGKTyTM 100 (874)
+.-++..|.||||||.++
T Consensus 53 ~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGCEEEEECTTSSHHHHH
T ss_pred cceEEEECCCCCCHHHHH
Confidence 567889999999999875
No 217
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=28.76 E-value=16 Score=33.91 Aligned_cols=16 Identities=38% Similarity=0.482 Sum_probs=13.4
Q ss_pred eeEEEeccCCCCccee
Q 002847 84 ACIFAYGQTGTGKSFT 99 (874)
Q Consensus 84 ~TIfAYGQTGSGKTyT 99 (874)
..|+..|.+|||||+.
T Consensus 3 ~~I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred eEEEEecCCCCCHHHH
Confidence 3578899999999973
No 218
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=28.72 E-value=1.9e+02 Score=27.42 Aligned_cols=68 Identities=12% Similarity=0.128 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhhccccCcCCchhhhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 002847 317 LCETICSLNFATRVKSVHLGHEDSNEARD-------QKEVSMKNLQQKMKKIEEERLRVRGEIENLSEKLEALTR 384 (874)
Q Consensus 317 ~eETLsTLrFAsRAK~Ik~~~~~~~~~~~-------~k~~~~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~ 384 (874)
-++.+..|++...++...+.-+....... ........+++++..+++++..++..++.|...++....
T Consensus 42 ~~~dl~~l~~I~~lr~~G~sL~eIk~~l~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~ 116 (142)
T 3gp4_A 42 GAEDLRWILFTRQMRRAGLSIEALIDYLALFREGEHTLEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDT 116 (142)
T ss_dssp CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36678888888888765542211111100 011112334445555555555555555555555544443
No 219
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=28.69 E-value=27 Score=41.81 Aligned_cols=35 Identities=20% Similarity=0.448 Sum_probs=25.2
Q ss_pred HHHHhhHHHHHHh-hcCCCeeEEEeccCCCCcceec
Q 002847 66 EVFSEVEPVIKSV-LDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 66 eVF~~V~PlV~sv-LdGyN~TIfAYGQTGSGKTyTM 100 (874)
.||.-.......+ -++.|.||+.-|.+|||||.+.
T Consensus 76 HifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~t 111 (697)
T 1lkx_A 76 HMYALANDAYRSMRQSQENQCVIISGESGAGKTEAS 111 (697)
T ss_dssp CHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCCcEEEecCCCCCCchhhH
Confidence 3554433333333 3799999999999999999874
No 220
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=28.59 E-value=20 Score=37.99 Aligned_cols=18 Identities=39% Similarity=0.704 Sum_probs=14.6
Q ss_pred eeEEEeccCCCCcceecc
Q 002847 84 ACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 84 ~TIfAYGQTGSGKTyTM~ 101 (874)
..|...|++|+|||+|+.
T Consensus 106 ~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp SEEEEEESTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 456678999999999863
No 221
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=28.35 E-value=29 Score=36.82 Aligned_cols=34 Identities=15% Similarity=0.259 Sum_probs=22.1
Q ss_pred hHHHHHhhHHHHHHhhcCC-CeeEEEeccCCCCcceec
Q 002847 64 QDEVFSEVEPVIKSVLDGY-NACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 64 QeeVF~~V~PlV~svLdGy-N~TIfAYGQTGSGKTyTM 100 (874)
|+++++.+ ...+-.|. ...++-||+.|+|||.+.
T Consensus 7 ~~~~~~~l---~~~i~~~~~~~a~L~~G~~G~GKt~~a 41 (334)
T 1a5t_A 7 LRPDFEKL---VASYQAGRGHHALLIQALPGMGDDALI 41 (334)
T ss_dssp GHHHHHHH---HHHHHTTCCCSEEEEECCTTSCHHHHH
T ss_pred hHHHHHHH---HHHHHcCCcceeEEEECCCCchHHHHH
Confidence 44454443 33333454 456889999999999875
No 222
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=28.31 E-value=21 Score=43.16 Aligned_cols=26 Identities=35% Similarity=0.511 Sum_probs=18.6
Q ss_pred HHHHhhcCCCeeEEEeccCCCCcceecc
Q 002847 74 VIKSVLDGYNACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 74 lV~svLdGyN~TIfAYGQTGSGKTyTM~ 101 (874)
.|..++.+ ..++..|+.|||||+|+.
T Consensus 364 Av~~~l~~--~~~lI~GppGTGKT~ti~ 389 (800)
T 2wjy_A 364 AVKTVLQR--PLSLIQGPPGTGKTVTSA 389 (800)
T ss_dssp HHHHHHTS--SEEEEECCTTSCHHHHHH
T ss_pred HHHHhccC--CeEEEEcCCCCCHHHHHH
Confidence 34444543 356789999999999864
No 223
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=27.97 E-value=22 Score=41.25 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=18.8
Q ss_pred HHHHhhcCCCeeEEEeccCCCCcceecc
Q 002847 74 VIKSVLDGYNACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 74 lV~svLdGyN~TIfAYGQTGSGKTyTM~ 101 (874)
.|..++. +..++..|..|||||+++.
T Consensus 197 Av~~~~~--~~~~~I~G~pGTGKTt~i~ 222 (574)
T 3e1s_A 197 VLDQLAG--HRLVVLTGGPGTGKSTTTK 222 (574)
T ss_dssp HHHHHTT--CSEEEEECCTTSCHHHHHH
T ss_pred HHHHHHh--CCEEEEEcCCCCCHHHHHH
Confidence 4455554 3567778999999999864
No 224
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=27.86 E-value=1.2e+02 Score=24.62 Aligned_cols=33 Identities=21% Similarity=0.328 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 002847 351 MKNLQQKMKKIEEERLRVRGEIENLSEKLEALT 383 (874)
Q Consensus 351 ~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~ 383 (874)
...|..+..+|.+.+...+.+|..|+++++.+.
T Consensus 18 l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 18 IDSLAARNSKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345556666777778888888888888888764
No 225
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=27.65 E-value=18 Score=35.50 Aligned_cols=17 Identities=29% Similarity=0.376 Sum_probs=13.7
Q ss_pred eeEEEeccCCCCcceec
Q 002847 84 ACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 84 ~TIfAYGQTGSGKTyTM 100 (874)
-.|.-.|++|||||.++
T Consensus 9 ~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred cEEEEECcCCCCHHHHH
Confidence 35667899999999864
No 226
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=27.33 E-value=16 Score=35.07 Aligned_cols=16 Identities=19% Similarity=0.436 Sum_probs=13.0
Q ss_pred eEEEeccCCCCcceec
Q 002847 85 CIFAYGQTGTGKSFTM 100 (874)
Q Consensus 85 TIfAYGQTGSGKTyTM 100 (874)
.|.-.|++|||||..+
T Consensus 7 ~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIK 22 (180)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667799999999854
No 227
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=27.11 E-value=16 Score=34.63 Aligned_cols=17 Identities=29% Similarity=0.487 Sum_probs=14.0
Q ss_pred eeEEEeccCCCCcceec
Q 002847 84 ACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 84 ~TIfAYGQTGSGKTyTM 100 (874)
..|.-.|+.|||||+.+
T Consensus 10 ~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIA 26 (191)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45778899999999864
No 228
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=27.08 E-value=88 Score=25.97 Aligned_cols=42 Identities=12% Similarity=0.191 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q 002847 352 KNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQEQL 393 (874)
Q Consensus 352 ~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~lqeql 393 (874)
..-++.+..|+.+...|..+...|+.++..|..+...+...+
T Consensus 19 ~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 19 NRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455667777777777777777777777766665555443
No 229
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=27.08 E-value=1.2e+02 Score=22.71 Aligned_cols=29 Identities=17% Similarity=0.396 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002847 351 MKNLQQKMKKIEEERLRVRGEIENLSEKL 379 (874)
Q Consensus 351 ~~~Lqqkik~LeeE~~~lr~EIe~Lk~~L 379 (874)
|.+|+.++++|-.+...|..|++.|+.-|
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44566666666666666666666665543
No 230
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=27.01 E-value=63 Score=24.21 Aligned_cols=28 Identities=18% Similarity=0.375 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002847 351 MKNLQQKMKKIEEERLRVRGEIENLSEK 378 (874)
Q Consensus 351 ~~~Lqqkik~LeeE~~~lr~EIe~Lk~~ 378 (874)
|.+|+.++.+|-.++..|+.|++.|+.-
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~L 29 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKKL 29 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3456666666666666666666666543
No 231
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=26.98 E-value=30 Score=41.92 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=19.6
Q ss_pred cCCCeeEEEeccCCCCcceec
Q 002847 80 DGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 80 dGyN~TIfAYGQTGSGKTyTM 100 (874)
++.|.||+..|.+|||||.+.
T Consensus 169 ~~~nQsIiisGESGAGKTe~t 189 (770)
T 1w9i_A 169 DRQNQSLLITGESGAGKTENT 189 (770)
T ss_dssp HCCCEEEEEECSTTSSHHHHH
T ss_pred hcCCcEEEEecCCCCcchHHH
Confidence 699999999999999999874
No 232
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=26.91 E-value=29 Score=41.99 Aligned_cols=21 Identities=24% Similarity=0.370 Sum_probs=19.6
Q ss_pred cCCCeeEEEeccCCCCcceec
Q 002847 80 DGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 80 dGyN~TIfAYGQTGSGKTyTM 100 (874)
++.|.||+.-|.+|||||.+.
T Consensus 137 ~~~nQsIiiSGESGAGKTe~t 157 (784)
T 2v26_A 137 LKLSQSIIVSGESGAGKTENT 157 (784)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEEcCCCCCCceehH
Confidence 699999999999999999874
No 233
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=26.89 E-value=36 Score=38.46 Aligned_cols=39 Identities=18% Similarity=0.310 Sum_probs=25.7
Q ss_pred ChHHHHHhhHHHHHHhhcC---------CCeeEEEeccCCCCcceecc
Q 002847 63 SQDEVFSEVEPVIKSVLDG---------YNACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 63 sQeeVF~~V~PlV~svLdG---------yN~TIfAYGQTGSGKTyTM~ 101 (874)
..+.|...+..-+..++.+ -...|+..|.+|+|||+|..
T Consensus 71 ~~~~v~~~l~~eL~~~L~~~~~~~~~~~~p~vIlivG~~G~GKTTt~~ 118 (443)
T 3dm5_A 71 KKEHIIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGIQGSGKTTTVA 118 (443)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCCCCCCCSSSEEEEEECCTTSSHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCcccccccCCCCeEEEEECcCCCCHHHHHH
Confidence 3455555555444444542 24578889999999999964
No 234
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=26.89 E-value=18 Score=33.79 Aligned_cols=16 Identities=31% Similarity=0.318 Sum_probs=13.7
Q ss_pred eeEEEeccCCCCccee
Q 002847 84 ACIFAYGQTGTGKSFT 99 (874)
Q Consensus 84 ~TIfAYGQTGSGKTyT 99 (874)
..|+..|.+|||||+.
T Consensus 4 ~~i~l~G~~GsGKST~ 19 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGI 19 (178)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3688999999999875
No 235
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=26.75 E-value=19 Score=39.91 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=19.4
Q ss_pred HHHHhhcCCCeeEEEeccCCCCccee
Q 002847 74 VIKSVLDGYNACIFAYGQTGTGKSFT 99 (874)
Q Consensus 74 lV~svLdGyN~TIfAYGQTGSGKTyT 99 (874)
++..+++|.+. +++.|+||||||..
T Consensus 11 ~i~~~l~~~~~-~lv~a~TGsGKT~~ 35 (451)
T 2jlq_A 11 VDEDIFRKKRL-TIMDLHPGAGKTKR 35 (451)
T ss_dssp CCGGGGSTTCE-EEECCCTTSSCCTT
T ss_pred HHHHHHhcCCe-EEEECCCCCCHhhH
Confidence 34567888765 56779999999986
No 236
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=26.61 E-value=16 Score=35.19 Aligned_cols=15 Identities=47% Similarity=0.660 Sum_probs=12.4
Q ss_pred EEEeccCCCCcceec
Q 002847 86 IFAYGQTGTGKSFTM 100 (874)
Q Consensus 86 IfAYGQTGSGKTyTM 100 (874)
|.-.|++|||||+++
T Consensus 4 i~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 4 IVISGPSGTGKSTLL 18 (186)
T ss_dssp EEEESSSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999875
No 237
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=26.61 E-value=25 Score=36.12 Aligned_cols=17 Identities=24% Similarity=0.260 Sum_probs=15.0
Q ss_pred eeEEEeccCCCCcceec
Q 002847 84 ACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 84 ~TIfAYGQTGSGKTyTM 100 (874)
..++.+|+.|+|||..+
T Consensus 32 ~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcCCHHHHH
Confidence 67889999999999865
No 238
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=26.56 E-value=19 Score=34.05 Aligned_cols=15 Identities=33% Similarity=0.567 Sum_probs=12.9
Q ss_pred eEEEeccCCCCccee
Q 002847 85 CIFAYGQTGTGKSFT 99 (874)
Q Consensus 85 TIfAYGQTGSGKTyT 99 (874)
.|+-.|.+|||||+.
T Consensus 7 ~i~l~G~~GsGKst~ 21 (185)
T 3trf_A 7 NIYLIGLMGAGKTSV 21 (185)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578899999999874
No 239
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=26.53 E-value=36 Score=38.29 Aligned_cols=19 Identities=32% Similarity=0.392 Sum_probs=15.1
Q ss_pred CeeEEEeccCCCCcceecc
Q 002847 83 NACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 83 N~TIfAYGQTGSGKTyTM~ 101 (874)
...|+..|.+|+|||+|+.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~ 115 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAG 115 (433)
T ss_dssp SEEEEECCCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3467777999999999863
No 240
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=26.49 E-value=29 Score=39.97 Aligned_cols=16 Identities=38% Similarity=0.636 Sum_probs=14.1
Q ss_pred eEEEeccCCCCcceec
Q 002847 85 CIFAYGQTGTGKSFTM 100 (874)
Q Consensus 85 TIfAYGQTGSGKTyTM 100 (874)
.|.-.|.+|||||.++
T Consensus 295 VI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCcccHHHHH
Confidence 5778899999999986
No 241
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=26.22 E-value=92 Score=25.95 Aligned_cols=39 Identities=13% Similarity=0.257 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHH
Q 002847 353 NLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQE 391 (874)
Q Consensus 353 ~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~lqe 391 (874)
.-.+....|+.+...|..+...|+.+++.|..++..+..
T Consensus 20 KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 20 KKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455667777777777777777777777666655543
No 242
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=25.82 E-value=19 Score=41.87 Aligned_cols=20 Identities=15% Similarity=0.277 Sum_probs=17.1
Q ss_pred CCeeEEEeccCCCCcceecc
Q 002847 82 YNACIFAYGQTGTGKSFTME 101 (874)
Q Consensus 82 yN~TIfAYGQTGSGKTyTM~ 101 (874)
.++.++..|..|||||+||.
T Consensus 14 ~~~~~lV~AgaGSGKT~~l~ 33 (673)
T 1uaa_A 14 VTGPCLVLAGAGSGKTRVIT 33 (673)
T ss_dssp CSSEEEECCCTTSCHHHHHH
T ss_pred CCCCEEEEeCCCCChHHHHH
Confidence 46778899999999999964
No 243
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=25.80 E-value=1.5e+02 Score=25.78 Aligned_cols=33 Identities=15% Similarity=0.170 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 002847 352 KNLQQKMKKIEEERLRVRGEIENLSEKLEALTR 384 (874)
Q Consensus 352 ~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~ 384 (874)
...+..+++++.++.....+|.+|+.+|..++.
T Consensus 36 r~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 36 RQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344455666677777777777777777766543
No 244
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=25.62 E-value=31 Score=43.36 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=19.5
Q ss_pred cCCCeeEEEeccCCCCcceec
Q 002847 80 DGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 80 dGyN~TIfAYGQTGSGKTyTM 100 (874)
++.|.||+..|.+|||||.+.
T Consensus 166 ~~~~Q~i~isGeSGaGKTe~~ 186 (1184)
T 1i84_S 166 DREDQSILCTGESGAGKTENT 186 (1184)
T ss_dssp HTCCEEEECCCSTTSSTTHHH
T ss_pred cCCCcEEEEecCCCCCccHHH
Confidence 799999999999999999774
No 245
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=25.58 E-value=1.7e+02 Score=27.00 Aligned_cols=45 Identities=13% Similarity=0.130 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHhhcc
Q 002847 353 NLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQEQLEVSH 397 (874)
Q Consensus 353 ~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~lqeql~~~~ 397 (874)
++++.+..+..|.....++++.++.....|+.....++.+++...
T Consensus 41 e~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qRD 85 (103)
T 4h22_A 41 ELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQRE 85 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444455555555555555555555555443
No 246
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=25.57 E-value=27 Score=42.02 Aligned_cols=51 Identities=22% Similarity=0.316 Sum_probs=32.1
Q ss_pred ceeEeceeeCCCCChHHHHHhh-HHHHH-Hhhc----CCCeeEEEeccCCCCcceec
Q 002847 50 KNYSFDKVFHPGSSQDEVFSEV-EPVIK-SVLD----GYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 50 k~F~FD~VF~~~asQeeVF~~V-~PlV~-svLd----GyN~TIfAYGQTGSGKTyTM 100 (874)
..+.||.|.+.+..-+.+.+.+ .|+-. .++. .....|+-||++|||||+.+
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 3577888887665555555554 33332 2232 22346899999999999764
No 247
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=25.39 E-value=32 Score=42.84 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=19.5
Q ss_pred cCCCeeEEEeccCCCCcceec
Q 002847 80 DGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 80 dGyN~TIfAYGQTGSGKTyTM 100 (874)
++.|.||+..|.+|||||.+.
T Consensus 169 ~~~~QsIiisGESGAGKTe~~ 189 (1010)
T 1g8x_A 169 DRQNQSLLITGESGAGKTENT 189 (1010)
T ss_dssp HTCCEEEEEEESTTSSHHHHH
T ss_pred cCCCeEEEEeCCCCCCcchHH
Confidence 799999999999999999874
No 248
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=25.36 E-value=19 Score=33.99 Aligned_cols=15 Identities=33% Similarity=0.494 Sum_probs=13.1
Q ss_pred eEEEeccCCCCccee
Q 002847 85 CIFAYGQTGTGKSFT 99 (874)
Q Consensus 85 TIfAYGQTGSGKTyT 99 (874)
.|+..|.+|||||+.
T Consensus 13 ~i~i~G~~GsGKst~ 27 (180)
T 3iij_A 13 NILLTGTPGVGKTTL 27 (180)
T ss_dssp CEEEECSTTSSHHHH
T ss_pred eEEEEeCCCCCHHHH
Confidence 578899999999985
No 249
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=25.30 E-value=78 Score=35.88 Aligned_cols=41 Identities=15% Similarity=0.185 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHH
Q 002847 351 MKNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQE 391 (874)
Q Consensus 351 ~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~lqe 391 (874)
++.++++.+.++.+.++.++++++.+++++.++++...++.
T Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~ 551 (597)
T 3oja_B 511 FTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEK 551 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHH
Confidence 33444444444444444444444444444443333333333
No 250
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=25.08 E-value=33 Score=41.60 Aligned_cols=21 Identities=33% Similarity=0.607 Sum_probs=19.4
Q ss_pred cCCCeeEEEeccCCCCcceec
Q 002847 80 DGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 80 dGyN~TIfAYGQTGSGKTyTM 100 (874)
++.|.||+.-|.+|||||.+.
T Consensus 153 ~~~nQsIiisGESGAGKTe~t 173 (795)
T 1w7j_A 153 DERNQSIIVSGESGAGKTVSA 173 (795)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCeEEEEeCCCCCCcchHH
Confidence 699999999999999999874
No 251
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=25.00 E-value=28 Score=41.41 Aligned_cols=26 Identities=27% Similarity=0.558 Sum_probs=19.9
Q ss_pred HHHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 73 PVIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 73 PlV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
.+|..++.|.| ++..++||||||.+.
T Consensus 255 ~~i~~~l~~~~--~ll~~~TGsGKTl~~ 280 (797)
T 4a2q_A 255 ELAQPAINGKN--ALICAPTGSGKTFVS 280 (797)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHHhCCC--EEEEeCCCChHHHHH
Confidence 35566788877 567789999999764
No 252
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=24.95 E-value=17 Score=35.60 Aligned_cols=16 Identities=31% Similarity=0.488 Sum_probs=13.4
Q ss_pred eEEEeccCCCCcceec
Q 002847 85 CIFAYGQTGTGKSFTM 100 (874)
Q Consensus 85 TIfAYGQTGSGKTyTM 100 (874)
.+.-.|++|||||..+
T Consensus 6 ~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLL 21 (198)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999999875
No 253
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=24.75 E-value=34 Score=42.50 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=19.6
Q ss_pred cCCCeeEEEeccCCCCcceec
Q 002847 80 DGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 80 dGyN~TIfAYGQTGSGKTyTM 100 (874)
++.|.||+.-|.+|||||.+.
T Consensus 143 ~~~~QsIiisGESGAGKTe~~ 163 (995)
T 2ycu_A 143 DREDQSILCTGESGAGKTENT 163 (995)
T ss_dssp HCCCEEEEEECBTTSSHHHHH
T ss_pred cCCCcEEEecCCCCCCchhhH
Confidence 799999999999999999874
No 254
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=24.68 E-value=34 Score=41.44 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=19.6
Q ss_pred cCCCeeEEEeccCCCCcceec
Q 002847 80 DGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 80 dGyN~TIfAYGQTGSGKTyTM 100 (874)
++.|.||+.-|.+|||||.+.
T Consensus 168 ~~~nQsIiiSGESGAGKTe~t 188 (783)
T 4db1_A 168 DRENQSILITGESGAGKTVNT 188 (783)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred hCCCceEEEeCCCCCCCchHH
Confidence 799999999999999999874
No 255
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=24.61 E-value=31 Score=42.07 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=19.6
Q ss_pred cCCCeeEEEeccCCCCcceec
Q 002847 80 DGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 80 dGyN~TIfAYGQTGSGKTyTM 100 (874)
++.|.||+.-|.+|||||.+.
T Consensus 166 ~~~nQsIiiSGESGAGKTe~t 186 (837)
T 1kk8_A 166 DRENQSCLITGESGAGKTENT 186 (837)
T ss_dssp HTSEEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEEeCCCCCCchhhH
Confidence 699999999999999999874
No 256
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=24.52 E-value=1.5e+02 Score=24.14 Aligned_cols=41 Identities=24% Similarity=0.390 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHH
Q 002847 351 MKNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQE 391 (874)
Q Consensus 351 ~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~lqe 391 (874)
..+|-++++.|+.|+-.||+|++.-...|..|+.+...+.+
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKe 45 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKE 45 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHH
Confidence 45666777888888888888888888777777665544444
No 257
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=24.32 E-value=19 Score=35.34 Aligned_cols=17 Identities=35% Similarity=0.501 Sum_probs=13.8
Q ss_pred eeEEEeccCCCCcceec
Q 002847 84 ACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 84 ~TIfAYGQTGSGKTyTM 100 (874)
..+.-.|++|||||..+
T Consensus 31 ~~~~l~GpnGsGKSTLl 47 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFA 47 (251)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred cEEEEEeCCCCCHHHHH
Confidence 34666899999999875
No 258
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=24.28 E-value=20 Score=37.41 Aligned_cols=19 Identities=37% Similarity=0.597 Sum_probs=15.4
Q ss_pred CCeeEEEeccCCCCcceec
Q 002847 82 YNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 82 yN~TIfAYGQTGSGKTyTM 100 (874)
++-+|...|++|+|||..|
T Consensus 1 f~f~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 1 FDFNIMVVGQSGLGKSTLV 19 (270)
T ss_dssp CEEEEEEEESSSSSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHH
Confidence 3557888999999999764
No 259
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=24.26 E-value=1.4e+02 Score=22.43 Aligned_cols=28 Identities=18% Similarity=0.345 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002847 351 MKNLQQKMKKIEEERLRVRGEIENLSEK 378 (874)
Q Consensus 351 ~~~Lqqkik~LeeE~~~lr~EIe~Lk~~ 378 (874)
|.+|+.++.+|-.+...|+.|++.|+.-
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKXL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4455566666666666666666655543
No 260
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=24.25 E-value=20 Score=34.32 Aligned_cols=16 Identities=31% Similarity=0.424 Sum_probs=13.1
Q ss_pred eEEEeccCCCCcceec
Q 002847 85 CIFAYGQTGTGKSFTM 100 (874)
Q Consensus 85 TIfAYGQTGSGKTyTM 100 (874)
.|.-.|++|||||+.+
T Consensus 8 ~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVR 23 (207)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5677899999999764
No 261
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=24.08 E-value=22 Score=39.30 Aligned_cols=25 Identities=16% Similarity=0.050 Sum_probs=18.2
Q ss_pred HHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 74 VIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 74 lV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
.|..++.|.+ ++..|+||||||.+.
T Consensus 121 ai~~~~~~~~--~ll~~~tGsGKT~~~ 145 (510)
T 2oca_A 121 AVFEGLVNRR--RILNLPTSAGRSLIQ 145 (510)
T ss_dssp HHHHHHHHSE--EEEECCSTTTHHHHH
T ss_pred HHHHHHhcCC--cEEEeCCCCCHHHHH
Confidence 4555566644 467799999999885
No 262
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=24.06 E-value=1.5e+02 Score=22.37 Aligned_cols=28 Identities=14% Similarity=0.262 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002847 351 MKNLQQKMKKIEEERLRVRGEIENLSEK 378 (874)
Q Consensus 351 ~~~Lqqkik~LeeE~~~lr~EIe~Lk~~ 378 (874)
|.+|+.++.+|-.+...|..|++.|+.-
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4455556666666666666666655543
No 263
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=23.90 E-value=36 Score=42.64 Aligned_cols=21 Identities=24% Similarity=0.370 Sum_probs=19.6
Q ss_pred cCCCeeEEEeccCCCCcceec
Q 002847 80 DGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 80 dGyN~TIfAYGQTGSGKTyTM 100 (874)
.+.|-||+.-|.+|||||.+.
T Consensus 141 ~~~nQsIiiSGESGAGKTest 161 (1052)
T 4anj_A 141 LKLSQSIIVSGESGAGKTENT 161 (1052)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred hCCCceEEEecCCCCCHHHHH
Confidence 799999999999999999875
No 264
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=23.78 E-value=18 Score=37.46 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=16.3
Q ss_pred eeEEEeccCCCCcceeccC
Q 002847 84 ACIFAYGQTGTGKSFTMEG 102 (874)
Q Consensus 84 ~TIfAYGQTGSGKTyTM~G 102 (874)
..||..|..|+||||+|..
T Consensus 7 l~I~~~~kgGvGKTt~a~~ 25 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQ 25 (228)
T ss_dssp EEEEEESSTTSSHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHH
Confidence 5689999999999999753
No 265
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=23.77 E-value=24 Score=36.24 Aligned_cols=20 Identities=30% Similarity=0.373 Sum_probs=16.6
Q ss_pred hcCCCeeEEEeccCCCCcceec
Q 002847 79 LDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 79 LdGyN~TIfAYGQTGSGKTyTM 100 (874)
+.. ..++.+|+.|+|||..+
T Consensus 28 l~~--~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 28 LRA--PITLVLGLRRTGKSSII 47 (357)
T ss_dssp TCS--SEEEEEESTTSSHHHHH
T ss_pred hcC--CcEEEECCCCCCHHHHH
Confidence 444 58999999999999865
No 266
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=23.76 E-value=34 Score=42.30 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=18.2
Q ss_pred HHHHhhcCCCeeEEEeccCCCCccee
Q 002847 74 VIKSVLDGYNACIFAYGQTGTGKSFT 99 (874)
Q Consensus 74 lV~svLdGyN~TIfAYGQTGSGKTyT 99 (874)
+|..+++|.+ ++..|+||||||.+
T Consensus 47 aI~~il~g~~--vlv~apTGsGKTlv 70 (997)
T 4a4z_A 47 AVYHLEQGDS--VFVAAHTSAGKTVV 70 (997)
T ss_dssp HHHHHHTTCE--EEEECCTTSCSHHH
T ss_pred HHHHHHcCCC--EEEEECCCCcHHHH
Confidence 3456677754 68899999999954
No 267
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=23.54 E-value=16 Score=35.81 Aligned_cols=18 Identities=17% Similarity=0.150 Sum_probs=14.8
Q ss_pred eEEEeccCCCCcceeccC
Q 002847 85 CIFAYGQTGTGKSFTMEG 102 (874)
Q Consensus 85 TIfAYGQTGSGKTyTM~G 102 (874)
.++-||+.|+|||+.+.+
T Consensus 5 i~vi~G~~gsGKTT~ll~ 22 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLS 22 (184)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467899999999988643
No 268
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=23.45 E-value=22 Score=33.31 Aligned_cols=15 Identities=20% Similarity=0.461 Sum_probs=13.1
Q ss_pred eEEEeccCCCCccee
Q 002847 85 CIFAYGQTGTGKSFT 99 (874)
Q Consensus 85 TIfAYGQTGSGKTyT 99 (874)
.|+-.|..|||||+.
T Consensus 5 ~I~i~G~~GsGKsT~ 19 (192)
T 1kht_A 5 VVVVTGVPGVGSTTS 19 (192)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 588899999999974
No 269
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=23.41 E-value=18 Score=37.01 Aligned_cols=20 Identities=20% Similarity=0.110 Sum_probs=16.1
Q ss_pred CeeEEEeccCCCCcceeccC
Q 002847 83 NACIFAYGQTGTGKSFTMEG 102 (874)
Q Consensus 83 N~TIfAYGQTGSGKTyTM~G 102 (874)
...++-||.+|+|||..+.+
T Consensus 12 G~i~litG~mGsGKTT~ll~ 31 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIR 31 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHH
T ss_pred cEEEEEECCCCCcHHHHHHH
Confidence 35678899999999988654
No 270
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=23.34 E-value=30 Score=42.28 Aligned_cols=25 Identities=28% Similarity=0.587 Sum_probs=19.5
Q ss_pred HHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 74 VIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 74 lV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
+|..++.|.| ++..++||||||.+.
T Consensus 256 ai~~il~g~~--~ll~a~TGsGKTl~~ 280 (936)
T 4a2w_A 256 LAQPAINGKN--ALICAPTGSGKTFVS 280 (936)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHcCCC--EEEEeCCCchHHHHH
Confidence 5566678877 466789999999874
No 271
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=23.30 E-value=23 Score=37.68 Aligned_cols=17 Identities=29% Similarity=0.585 Sum_probs=14.1
Q ss_pred eeEEEeccCCCCcceec
Q 002847 84 ACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 84 ~TIfAYGQTGSGKTyTM 100 (874)
..|.-.|++|||||.++
T Consensus 103 ~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 35666799999999986
No 272
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=23.30 E-value=21 Score=34.04 Aligned_cols=16 Identities=38% Similarity=0.441 Sum_probs=13.2
Q ss_pred eEEEeccCCCCcceec
Q 002847 85 CIFAYGQTGTGKSFTM 100 (874)
Q Consensus 85 TIfAYGQTGSGKTyTM 100 (874)
.|.-.|+.|||||+.+
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4567899999999874
No 273
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=23.28 E-value=32 Score=39.37 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=17.2
Q ss_pred HHhhcCCCeeEEEeccCCCCcceec
Q 002847 76 KSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 76 ~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
..++.|. .|+-||++|+|||+..
T Consensus 36 ~al~~~~--~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 36 LAALSGE--SVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHTC--EEEEECCSSSSHHHHH
T ss_pred HHHhcCC--eeEeecCchHHHHHHH
Confidence 3344453 5788999999999875
No 274
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=23.18 E-value=24 Score=34.88 Aligned_cols=16 Identities=19% Similarity=0.312 Sum_probs=9.0
Q ss_pred eEEEeccCCCCcceec
Q 002847 85 CIFAYGQTGTGKSFTM 100 (874)
Q Consensus 85 TIfAYGQTGSGKTyTM 100 (874)
.|.-.|++|||||..+
T Consensus 29 ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EEEEECSCC----CHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999875
No 275
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=23.06 E-value=20 Score=34.95 Aligned_cols=15 Identities=33% Similarity=0.594 Sum_probs=12.5
Q ss_pred EEEeccCCCCcceec
Q 002847 86 IFAYGQTGTGKSFTM 100 (874)
Q Consensus 86 IfAYGQTGSGKTyTM 100 (874)
+.-.|+.|||||+.+
T Consensus 3 i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 3 IIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456899999999865
No 276
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=22.68 E-value=20 Score=38.88 Aligned_cols=20 Identities=30% Similarity=0.298 Sum_probs=14.8
Q ss_pred hcCCCeeEEEeccCCCCcceec
Q 002847 79 LDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 79 LdGyN~TIfAYGQTGSGKTyTM 100 (874)
-.|.+. .-.|+||||||+++
T Consensus 173 ~~G~~i--~ivG~sGsGKSTll 192 (361)
T 2gza_A 173 QLERVI--VVAGETGSGKTTLM 192 (361)
T ss_dssp HTTCCE--EEEESSSSCHHHHH
T ss_pred hcCCEE--EEECCCCCCHHHHH
Confidence 356654 44599999999876
No 277
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=22.37 E-value=35 Score=42.40 Aligned_cols=23 Identities=30% Similarity=0.300 Sum_probs=18.1
Q ss_pred HHHHhhcCCCeeEEEeccCCCCcce
Q 002847 74 VIKSVLDGYNACIFAYGQTGTGKSF 98 (874)
Q Consensus 74 lV~svLdGyN~TIfAYGQTGSGKTy 98 (874)
++..+++|.| +++.++||||||.
T Consensus 64 ai~~il~g~d--vlv~apTGSGKTl 86 (1054)
T 1gku_B 64 WAKRILRKES--FAATAPTGVGKTS 86 (1054)
T ss_dssp HHHHHHTTCC--EECCCCBTSCSHH
T ss_pred HHHHHHhCCC--EEEEcCCCCCHHH
Confidence 4566778876 5788999999994
No 278
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=22.25 E-value=26 Score=32.29 Aligned_cols=15 Identities=27% Similarity=0.036 Sum_probs=12.7
Q ss_pred eEEEeccCCCCccee
Q 002847 85 CIFAYGQTGTGKSFT 99 (874)
Q Consensus 85 TIfAYGQTGSGKTyT 99 (874)
.|+-.|..|||||+.
T Consensus 3 ~i~l~G~~GsGKsT~ 17 (173)
T 3kb2_A 3 LIILEGPDCCFKSTV 17 (173)
T ss_dssp EEEEECSSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467789999999975
No 279
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=22.20 E-value=21 Score=38.27 Aligned_cols=19 Identities=37% Similarity=0.599 Sum_probs=14.7
Q ss_pred cCCCeeEEEeccCCCCcceec
Q 002847 80 DGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 80 dGyN~TIfAYGQTGSGKTyTM 100 (874)
.|.+ +.-.|++|||||.++
T Consensus 170 ~g~~--v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 170 IGKN--VIVCGGTGSGKTTYI 188 (330)
T ss_dssp HTCC--EEEEESTTSCHHHHH
T ss_pred CCCE--EEEECCCCCCHHHHH
Confidence 5654 556799999999875
No 280
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=22.08 E-value=25 Score=32.74 Aligned_cols=15 Identities=47% Similarity=0.647 Sum_probs=13.0
Q ss_pred eEEEeccCCCCccee
Q 002847 85 CIFAYGQTGTGKSFT 99 (874)
Q Consensus 85 TIfAYGQTGSGKTyT 99 (874)
.|.-.|..|||||+.
T Consensus 6 ~i~l~G~~GsGKSTl 20 (173)
T 1kag_A 6 NIFLVGPMGAGKSTI 20 (173)
T ss_dssp CEEEECCTTSCHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 577899999999975
No 281
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=22.08 E-value=32 Score=41.47 Aligned_cols=24 Identities=17% Similarity=0.308 Sum_probs=17.6
Q ss_pred HhhcCCCeeEEEeccCCCCcceec
Q 002847 77 SVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 77 svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
..-.|....++..|+||||||...
T Consensus 383 ~l~~~~~~~~Ll~a~TGSGKTlva 406 (780)
T 1gm5_A 383 DMISEKPMNRLLQGDVGSGKTVVA 406 (780)
T ss_dssp HHHSSSCCCCEEECCSSSSHHHHH
T ss_pred hccccCCCcEEEEcCCCCCHHHHH
Confidence 333455556788999999999764
No 282
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=21.99 E-value=26 Score=33.89 Aligned_cols=15 Identities=40% Similarity=0.556 Sum_probs=13.1
Q ss_pred eEEEeccCCCCccee
Q 002847 85 CIFAYGQTGTGKSFT 99 (874)
Q Consensus 85 TIfAYGQTGSGKTyT 99 (874)
.|+-.|.+|||||+.
T Consensus 27 ~i~l~G~~GsGKsTl 41 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTL 41 (199)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEEcCCCCCHHHH
Confidence 578899999999975
No 283
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=21.78 E-value=45 Score=40.56 Aligned_cols=49 Identities=20% Similarity=0.352 Sum_probs=31.6
Q ss_pred eEeceeeCCCCChHHHHHhh-HHHHH-HhhcCCC----eeEEEeccCCCCcceec
Q 002847 52 YSFDKVFHPGSSQDEVFSEV-EPVIK-SVLDGYN----ACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 52 F~FD~VF~~~asQeeVF~~V-~PlV~-svLdGyN----~TIfAYGQTGSGKTyTM 100 (874)
..||.|-+-+..-+++.+.| -|+-. .++.++. ..|+-||+.|+|||...
T Consensus 201 v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHH
T ss_pred CChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 46777766655555555444 35442 3455543 46999999999999653
No 284
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=21.76 E-value=1.7e+02 Score=25.82 Aligned_cols=43 Identities=21% Similarity=0.348 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q 002847 351 MKNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQEQL 393 (874)
Q Consensus 351 ~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~lqeql 393 (874)
...|..++.+|-.|...++.|+..+++....+...+..+++++
T Consensus 32 k~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 32 KNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777777777777777776666655555555444
No 285
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=21.56 E-value=3e+02 Score=24.83 Aligned_cols=27 Identities=22% Similarity=0.476 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCh
Q 002847 360 KIEEERLRVRGEIENLSEKLEALTRPA 386 (874)
Q Consensus 360 ~LeeE~~~lr~EIe~Lk~~Le~l~~~~ 386 (874)
.||.+...+..+++.|+.++..+..+.
T Consensus 52 ~LE~e~~~L~~e~~~L~~e~~~~~~e~ 78 (90)
T 2wt7_B 52 HLENEKTQLIQQVEQLKQEVSRLARER 78 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443333
No 286
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=21.51 E-value=25 Score=35.94 Aligned_cols=15 Identities=33% Similarity=0.443 Sum_probs=12.6
Q ss_pred eEEEeccCCCCccee
Q 002847 85 CIFAYGQTGTGKSFT 99 (874)
Q Consensus 85 TIfAYGQTGSGKTyT 99 (874)
.|+..|++|||||..
T Consensus 3 li~I~G~~GSGKSTl 17 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 477899999999873
No 287
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=21.51 E-value=61 Score=26.76 Aligned_cols=39 Identities=13% Similarity=0.278 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHH
Q 002847 352 KNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQ 390 (874)
Q Consensus 352 ~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~lq 390 (874)
..-.+.+..|+.+...|..+...|..++..|..+...+.
T Consensus 18 ~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 18 KRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777777777777777777777766554443
No 288
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=21.32 E-value=24 Score=40.06 Aligned_cols=25 Identities=36% Similarity=0.575 Sum_probs=18.7
Q ss_pred HHHHhhcCCCeeEEEeccCCCCcceec
Q 002847 74 VIKSVLDGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 74 lV~svLdGyN~TIfAYGQTGSGKTyTM 100 (874)
+|..+++|.++ ++.++||||||.+.
T Consensus 33 ~i~~il~g~d~--lv~apTGsGKTl~~ 57 (523)
T 1oyw_A 33 IIDTVLSGRDC--LVVMPTGGGKSLCY 57 (523)
T ss_dssp HHHHHHTTCCE--EEECSCHHHHHHHH
T ss_pred HHHHHHcCCCE--EEECCCCcHHHHHH
Confidence 45667788874 55679999999753
No 289
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=21.20 E-value=25 Score=33.20 Aligned_cols=16 Identities=31% Similarity=0.297 Sum_probs=13.4
Q ss_pred eEEEeccCCCCcceec
Q 002847 85 CIFAYGQTGTGKSFTM 100 (874)
Q Consensus 85 TIfAYGQTGSGKTyTM 100 (874)
...-+|++|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 5578899999999765
No 290
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=21.15 E-value=26 Score=33.08 Aligned_cols=16 Identities=38% Similarity=0.476 Sum_probs=13.8
Q ss_pred eeEEEeccCCCCccee
Q 002847 84 ACIFAYGQTGTGKSFT 99 (874)
Q Consensus 84 ~TIfAYGQTGSGKTyT 99 (874)
..|+..|..|||||+.
T Consensus 6 ~~I~l~G~~GsGKST~ 21 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTL 21 (193)
T ss_dssp EEEEEEESTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4688899999999985
No 291
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=21.12 E-value=90 Score=32.97 Aligned_cols=34 Identities=21% Similarity=0.333 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 002847 351 MKNLQQKMKKIEEERLRVRGEIENLSEKLEALTR 384 (874)
Q Consensus 351 ~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~ 384 (874)
...|..+.+.|.+++..+++||..|+++++.|..
T Consensus 63 l~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 63 IDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444455555666666666667777666666644
No 292
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=21.06 E-value=84 Score=22.97 Aligned_cols=25 Identities=24% Similarity=0.506 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Q 002847 360 KIEEERLRVRGEIENLSEKLEALTR 384 (874)
Q Consensus 360 ~LeeE~~~lr~EIe~Lk~~Le~l~~ 384 (874)
.||++...|+.-+++|+++++.|..
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777777776643
No 293
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=21.05 E-value=68 Score=29.45 Aligned_cols=29 Identities=21% Similarity=0.383 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 002847 357 KMKKIEEERLRVRGEIENLSEKLEALTRP 385 (874)
Q Consensus 357 kik~LeeE~~~lr~EIe~Lk~~Le~l~~~ 385 (874)
.|+.|+.++..++++++.++++++.++..
T Consensus 8 ~~~~l~~~~~~l~~~i~~lkeel~~L~~~ 36 (109)
T 2wg5_A 8 RMKQLEDKVEELLSKNYHLENEVARLRSP 36 (109)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 35566777777777888888887776553
No 294
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=21.00 E-value=24 Score=34.42 Aligned_cols=16 Identities=25% Similarity=0.416 Sum_probs=12.7
Q ss_pred eEEEeccCCCCcceec
Q 002847 85 CIFAYGQTGTGKSFTM 100 (874)
Q Consensus 85 TIfAYGQTGSGKTyTM 100 (874)
.+.-.|++|||||..+
T Consensus 22 i~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVV 37 (207)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3455699999999875
No 295
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=20.65 E-value=2.1e+02 Score=26.39 Aligned_cols=42 Identities=19% Similarity=0.352 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHcCChhhHHHH
Q 002847 351 MKNLQQKMKKIEEERLRVRG-------EIENLSEKLEALTRPAHSFQEQ 392 (874)
Q Consensus 351 ~~~Lqqkik~LeeE~~~lr~-------EIe~Lk~~Le~l~~~~~~lqeq 392 (874)
.-.|...+..+++|..+++. .|.+|..+++.|+.++..+-.+
T Consensus 39 Yl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e 87 (104)
T 3s9g_A 39 YLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTE 87 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666667777766665 5677777777776666555443
No 296
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=20.60 E-value=35 Score=32.41 Aligned_cols=20 Identities=30% Similarity=0.240 Sum_probs=15.5
Q ss_pred cCCCeeEEEeccCCCCccee
Q 002847 80 DGYNACIFAYGQTGTGKSFT 99 (874)
Q Consensus 80 dGyN~TIfAYGQTGSGKTyT 99 (874)
.+..-.|.-.|.+|||||+.
T Consensus 5 ~~~~~~I~i~G~~GsGKST~ 24 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTV 24 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHH
T ss_pred ccCceEEEEECCCCCCHHHH
Confidence 44556788899999999974
No 297
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=20.58 E-value=27 Score=32.74 Aligned_cols=15 Identities=33% Similarity=0.691 Sum_probs=13.0
Q ss_pred eEEEeccCCCCccee
Q 002847 85 CIFAYGQTGTGKSFT 99 (874)
Q Consensus 85 TIfAYGQTGSGKTyT 99 (874)
.|+-.|..|||||+.
T Consensus 5 ~I~l~G~~GsGKsT~ 19 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQ 19 (196)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578899999999874
No 298
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=20.56 E-value=34 Score=33.06 Aligned_cols=19 Identities=32% Similarity=0.475 Sum_probs=14.8
Q ss_pred CCeeEEEeccCCCCcceec
Q 002847 82 YNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 82 yN~TIfAYGQTGSGKTyTM 100 (874)
-...|.-.|.+|||||+.+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3456778899999999753
No 299
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=20.53 E-value=1.7e+02 Score=25.14 Aligned_cols=42 Identities=12% Similarity=0.252 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHh
Q 002847 353 NLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQEQLE 394 (874)
Q Consensus 353 ~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~lqeql~ 394 (874)
.-++.+++||.++..+....+.+..+.+.|...+..+..++.
T Consensus 26 RK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 26 RKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666666666666666666666666666655555443
No 300
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=20.36 E-value=1.6e+02 Score=27.28 Aligned_cols=43 Identities=19% Similarity=0.249 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q 002847 351 MKNLQQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQEQL 393 (874)
Q Consensus 351 ~~~Lqqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~lqeql 393 (874)
+..+++++.....++..|..++..|+..++.+.++..=+...|
T Consensus 6 ~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KL 48 (106)
T 4e61_A 6 LVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKL 48 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666677777766666655544444333
No 301
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=20.28 E-value=35 Score=31.52 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=19.9
Q ss_pred HHHHhhc-CCCeeEEEeccCCCCcceec
Q 002847 74 VIKSVLD-GYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 74 lV~svLd-GyN~TIfAYGQTGSGKTyTM 100 (874)
+++.++. .....|...|.+|+|||..+
T Consensus 8 ~~~~~~~~~~~~~i~v~G~~~~GKssli 35 (183)
T 1moz_A 8 MFDKLWGSNKELRILILGLDGAGKTTIL 35 (183)
T ss_dssp HHGGGTTCSSCEEEEEEEETTSSHHHHH
T ss_pred HHHHhcCCCCccEEEEECCCCCCHHHHH
Confidence 4444454 46678999999999999754
No 302
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=20.19 E-value=1.3e+02 Score=24.68 Aligned_cols=28 Identities=7% Similarity=0.366 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002847 351 MKNLQQKMKKIEEERLRVRGEIENLSEK 378 (874)
Q Consensus 351 ~~~Lqqkik~LeeE~~~lr~EIe~Lk~~ 378 (874)
+..+...+..+.+|+..|+.+++.|+++
T Consensus 29 Ld~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 29 LAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455555555555555555555555443
No 303
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=20.15 E-value=1.5e+02 Score=25.85 Aligned_cols=39 Identities=15% Similarity=0.154 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q 002847 355 QQKMKKIEEERLRVRGEIENLSEKLEALTRPAHSFQEQL 393 (874)
Q Consensus 355 qqkik~LeeE~~~lr~EIe~Lk~~Le~l~~~~~~lqeql 393 (874)
.+.+.+||..+.-...-|+.|...+.+.++.+..++.++
T Consensus 13 e~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql 51 (78)
T 3efg_A 13 EARLVELETRLSFQEQALTELSEALADARLTGARNAELI 51 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444443
No 304
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=20.13 E-value=27 Score=35.81 Aligned_cols=21 Identities=29% Similarity=0.632 Sum_probs=17.0
Q ss_pred cCCCeeEEEeccCCCCcceec
Q 002847 80 DGYNACIFAYGQTGTGKSFTM 100 (874)
Q Consensus 80 dGyN~TIfAYGQTGSGKTyTM 100 (874)
.|+...|...|.+|+|||..+
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLi 25 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLI 25 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHH
T ss_pred CccEEEEEEECCCCCCHHHHH
Confidence 688899999999999999643
No 305
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=20.11 E-value=35 Score=37.59 Aligned_cols=16 Identities=19% Similarity=0.160 Sum_probs=13.6
Q ss_pred eEEEeccCCCCcceec
Q 002847 85 CIFAYGQTGTGKSFTM 100 (874)
Q Consensus 85 TIfAYGQTGSGKTyTM 100 (874)
.++..|+||||||...
T Consensus 4 ~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRV 19 (431)
T ss_dssp EEEEECCTTSCTTTTH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4688999999999873
Done!