BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002849
(874 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GYD9|SDE3_ARATH Probable RNA helicase SDE3 OS=Arabidopsis thaliana GN=SDE3 PE=1
SV=1
Length = 1002
Score = 1180 bits (3053), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 571/889 (64%), Positives = 707/889 (79%), Gaps = 30/889 (3%)
Query: 7 DDNWGNEWEKRDIGFIDFEDYKSECSYNPSEEDPVQISFPFPFIDGKPQSVSVGETAVDS 66
DD + +K +IGFID+++ S YNP +E PV +S PFPF KPQSV+VGET+ DS
Sbjct: 9 DDEYSVIADKGEIGFIDYQNDGSSGCYNPFDEGPVVVSVPFPFKKEKPQSVTVGETSFDS 68
Query: 67 ITIKNTTREPVELWSKIYASTPENTFTLSVMKPPSPGSDSGTNRGFVEFFTLEERMIQPG 126
T+KNT EPV+LW+KIYAS PE++FTLS++KPPS SD + F E FTLE+RM++PG
Sbjct: 69 FTVKNTMDEPVDLWTKIYASNPEDSFTLSILKPPSKDSDLKERQCFYETFTLEDRMLEPG 128
Query: 127 QTLTIWLSCKPKGIGLHTTVLQFDV-EDRIERVVFLLAEDKISQSLASKRPYSRGGR--K 183
TLTIW+SCKPK IGLHTTV+ D DR+ERVVFLLAEDKIS SL S RPYSR R K
Sbjct: 129 DTLTIWVSCKPKDIGLHTTVVTVDWGSDRVERVVFLLAEDKISSSLTSNRPYSRSRRAPK 188
Query: 184 KQFSVDKYVVGSRPARYRGQIYQNRLPRYDIPNHIRELIERKQIPDAITDGLTLKNYTSF 243
K F+VD YV GSRP++ + ++NRLP Y+IP IRE+IE K+ PD + +GLT +NY ++
Sbjct: 189 KDFAVDDYVKGSRPSKVVERSFRNRLPLYEIPKEIREMIENKEFPDDLNEGLTARNYANY 248
Query: 244 FKTLLIMEEIQLKEDMRAYDMENVTLMRKGLYLSLVVPGLAERRPSLVNGDFIFAKHAYE 303
+KTLLIMEE+QL+EDMRAYDMENV++ R+G+YLSL VPGLAERRPSLV+GDFIF +HAY+
Sbjct: 249 YKTLLIMEELQLEEDMRAYDMENVSMKRRGIYLSLEVPGLAERRPSLVHGDFIFVRHAYD 308
Query: 304 D-TSSAYQGFIHRVEADEVHLKFASDFQLNHRDENLYNVQFTYNRVNMRRLYQATDAAQE 362
D T AYQGF+HRVEADEVH+KFAS+F H ++YNV+FTYNR+N RRLYQA DAA+
Sbjct: 309 DGTDHAYQGFVHRVEADEVHMKFASEFHQRHTAGSVYNVRFTYNRINTRRLYQAVDAAEM 368
Query: 363 LDTEFLFPSESSGIRLIESNTLVPISCNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKT 422
LD FLFPS SG R+I++ VPIS LN EQ+CSIE +LG KGAPPY+I+GPPGTGKT
Sbjct: 369 LDPNFLFPSLHSGKRMIKTKPFVPISPALNAEQICSIEMVLGCKGAPPYVIHGPPGTGKT 428
Query: 423 MTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILGEKAVEVRENEIFRLNAPSRPYE 482
MTLVEAI+QLY T+ +AR+LVCAPSNSAADH+LEK+L + V +++NEIFRLNA +R YE
Sbjct: 429 MTLVEAIVQLYTTQRNARVLVCAPSNSAADHILEKLLCLEGVRIKDNEIFRLNAATRSYE 488
Query: 483 DVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYAEGVDRGHFSHIFLDEAG 542
++ + IRFCFFDE IFKCPPL AL Y++++STYMSASL+ AEGV+RGHF+HI LDEAG
Sbjct: 489 EIKPEIIRFCFFDELIFKCPPLKALTRYKLVVSTYMSASLLNAEGVNRGHFTHILLDEAG 548
Query: 543 QASEPESMVPISSYCKKDTVVVLAGDPMQLGPVIYSREAETYGMGKSYLERLFECEPYCH 602
QASEPE+M+ +S+ C +TVVVLAGDP QLGPVIYSR+AE+ G+GKSYLERLFEC+ YC
Sbjct: 549 QASEPENMIAVSNLCLTETVVVLAGDPRQLGPVIYSRDAESLGLGKSYLERLFECDYYCE 608
Query: 603 GNENYVTKLVRNYRSHPQILHLPSKLFYEEELIACKDESISCTAYLNFLPNKEFPVLFFG 662
G+ENYVTKLV+NYR HP+IL LPSKLFY+ EL+A K+++ S A LNFLPNKEFP++F+G
Sbjct: 609 GDENYVTKLVKNYRCHPEILDLPSKLFYDGELVASKEDTDSVLASLNFLPNKEFPMVFYG 668
Query: 663 IQGCDEREGSNPSWFNRIEVSKVVEIIQKLTSTGNLSEEDIGVITPYRQQVLKLNKALES 722
IQGCDEREG+NPSWFNRIE+SKV+E I++LT+ + EEDIGVITPYRQQV+K+ + L+
Sbjct: 669 IQGCDEREGNNPSWFNRIEISKVIETIKRLTANDCVQEEDIGVITPYRQQVMKIKEVLDR 728
Query: 723 LYMPDIKVGSVEQFQGQERQVIIVSTVRSTIKHNDFDRKHCLGFLSNPRRFNVAVTRAIS 782
L M ++KVGSVEQFQGQE+QVII+STVRSTIKHN+FDR +CLGFLSNPRRFNVA+TRAIS
Sbjct: 729 LDMTEVKVGSVEQFQGQEKQVIIISTVRSTIKHNEFDRAYCLGFLSNPRRFNVAITRAIS 788
Query: 783 LLIIIGNPHIVSKDPYWHQLLWYCSDNNSYQGCALPEREEFADED------------PTA 830
LL+IIGNPHI+ KD W++LLW C DNN+YQGC LPE+EEF +E P
Sbjct: 789 LLVIIGNPHIICKDMNWNKLLWRCVDNNAYQGCGLPEQEEFVEEPFKQEGSSNGPQYPPE 848
Query: 831 AECWNHEEEIPQSFQEDN------WNQEPFQAENLKPVKDEDEWSDGWH 873
AE WN+ E+ +N WN N K+++EWSDGW+
Sbjct: 849 AE-WNNSGELNNGGANENGEWSDGWN-------NNGGTKEKNEWSDGWN 889
>sp|Q5ZKD7|MOV10_CHICK Putative helicase MOV-10 OS=Gallus gallus GN=MOV10 PE=2 SV=1
Length = 967
Score = 435 bits (1118), Expect = e-121, Method: Compositional matrix adjust.
Identities = 288/760 (37%), Positives = 425/760 (55%), Gaps = 79/760 (10%)
Query: 122 MIQPGQTLTIWLSCKPKGIGLHTTVLQFDVEDR------IERVVFLLAEDKISQSLASKR 175
++ PG I + C G V+ F+ I R + +A+ +++ L
Sbjct: 196 VLHPGGAYPIQVRCLTSHNGFFRAVVMFEFSKEPDGSFSIGRSIAAIAQSPLARELGPSA 255
Query: 176 PYSRGGRKKQFSVDKYVV-----GSRPARYRGQIYQNRLP--RYDIPNHIRE--LIERKQ 226
PY R Q S+ + + G P + +P Y P ++E ++ K
Sbjct: 256 PY----RPYQASLQRPITVVTEDGVPPVSSLKNELEKEIPLGTYPYPKSLKETIMLGPKT 311
Query: 227 IPDA--------ITDGLTLKNYTSFFKTLLIMEEIQLKEDMRAYDMENVTLMRKGLYLSL 278
PD+ + L +NY F+ LL +EEIQL+ D+R YD++ V +++ L L
Sbjct: 312 SPDSSWMKMQSLLEAPLQPENYKQKFELLLHLEEIQLEVDIRRYDLQEVPMVQNRALLLL 371
Query: 279 VVPGLAERRPSLVNGDFIFAKHAYEDTSSA---YQGFIHRVEADEVHLKFASDFQLNHRD 335
VPG+AE RPS++ GD +FA + E SS Y+G++H VE + V L F+ +
Sbjct: 372 NVPGVAENRPSVLRGDHLFASLSSERDSSPRVLYKGYVHGVELERVQLGFSPKLMKKFVN 431
Query: 336 ENLYNVQFTYNRVNMRRLYQATDAAQE--LDTEFLFPSESSGIRLIESNTLVPI----SC 389
+ ++V FT+NR+ ++ ++A A + LD+ LFPS S R + + P
Sbjct: 432 DLKFDVTFTFNRLPLQVQHRAAAMAMQKGLDS-VLFPSASCQ-RSLFTGIFQPRWFDRKV 489
Query: 390 NLNEEQMCSIEKIL-GLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSN 448
NEEQ +++ I+ G+ PYLI+GPPGTGKT+TLVEAI Q+++ +DAR+L CAPSN
Sbjct: 490 EANEEQCQAVKHIVTGMSRPAPYLIFGPPGTGKTVTLVEAIKQVWSCFKDARILACAPSN 549
Query: 449 SAADHLLEKILGEKAVEVRENEIFRLNAPSRPYEDVNADHIRFCFFD--EQIFKCPPLAA 506
SAAD L +++L + I+R+ A S Y+DV AD C +D E+ + P
Sbjct: 550 SAADLLCQRLL----TNIAPRYIYRIMASSANYKDVPADVRPCCNWDDSEKCYVYPSKKL 605
Query: 507 LVCYRIIISTYMSASLIYAEGVDRGHFSHIFLDEAGQASEPESMVPISSYCKK---DT-- 561
L YRI+I+T ++A + + G+FSH+F+DE G A EPES+V I+ DT
Sbjct: 606 LKPYRILITTLVTAGRLVSANFPPGYFSHVFIDECGHAVEPESVVAIAGLLTTMDPDTNP 665
Query: 562 ---VVVLAGDPMQLGPVIYSREAETYGMGKSYLERL-FECEPYCHGNENY----VTKLVR 613
+VLAGDP QLGPV S A +G+G S LERL Y +E Y VTKL+
Sbjct: 666 NGGQLVLAGDPQQLGPVPRSPLAAQHGLGTSLLERLMLHNALYAKSDEGYNPQFVTKLLW 725
Query: 614 NYRSHPQILHLPSKLFYEEELIACKD-----ESISCTAYLNFLPNKEFPVLFFGIQGCDE 668
NYRSH IL +P++LFY+ EL A + + CT LPN+ P++F G+ G DE
Sbjct: 726 NYRSHKAILKVPNELFYDSELKAYEGSEPDVRNFYCT--WEELPNRGVPIIFHGVCGEDE 783
Query: 669 REGSNPSWFNRIEVSKVVEIIQKLTSTGN------LSEEDIGVITPYRQQVLKLNKALES 722
RE +PS+FN E+ VV+ +QKL + +S ++IG+I+PYR+QV K+ A+ S
Sbjct: 784 REAKSPSFFNTAEIEVVVQYLQKLLQSQGRRGCPTISPKEIGIISPYRKQVEKIRLAITS 843
Query: 723 -----LYMPDI---KVGSVEQFQGQERQVIIVSTVRSTIKHNDFDRKHCLGFLSNPRRFN 774
+PDI KVGSVE+FQGQER+VI++STVRS ++ D+ LGFL NP+R N
Sbjct: 844 KDPVLRALPDIGQLKVGSVEEFQGQERRVILISTVRSCSEYLQLDQTFRLGFLKNPKRLN 903
Query: 775 VAVTRAISLLIIIGNPHIVSKDPYWHQLLWYCSDNNSYQG 814
VA+TRA +LLI++GN ++SKDP+WH+ L YC D +Y+G
Sbjct: 904 VALTRAKALLIVVGNAAVLSKDPHWHRFLRYCRDEGAYRG 943
>sp|Q1LXK4|M10B1_DANRE Putative helicase mov-10-B.1 OS=Danio rerio GN=mov10b.1 PE=2 SV=2
Length = 1013
Score = 432 bits (1111), Expect = e-120, Method: Compositional matrix adjust.
Identities = 288/785 (36%), Positives = 440/785 (56%), Gaps = 91/785 (11%)
Query: 112 FVEFFTLEE---------RMIQPGQTLTIWLSCKPKGIGLHTTVLQFDVED-------RI 155
++++FTL++ ++P +T + L K IG++ L F+ ++ I
Sbjct: 208 YLQYFTLDDSQRVRKDNPHRLEPNETYEVILRFKSDQIGVYPATLAFEFKENQDTRPFHI 267
Query: 156 ERVVFLLAEDKISQSLASKRPYS----RGGRKKQFSVDKYVVGSRPARYRGQIYQNRLP- 210
R + +++ L P+ + ++S+D+ G +P + +P
Sbjct: 268 VRFIEAQHRSELTAQLGPTEPFRPKRLDTNQPMKWSIDE---GFKPESSSQNFLKFVVPL 324
Query: 211 -RYDIPNHIRELIE--------RKQIPD---AITDGLTLKNYTSFFKTLLIMEEIQLKED 258
Y+ P++ LIE KQ+ + + L+ NY F LL +EE Q++ D
Sbjct: 325 DNYNCPSYTSALIEVLKGNRSSGKQLQEHQLTLESDLSFNNYMDRFDLLLYLEEDQMRMD 384
Query: 259 MRAYDMENVTLMR---KGLYLSLVVPGLAERRPSLVNGDFIFAKHAYEDTSS---AYQGF 312
++ Y+ ++V+++R K L L L +PG++E RPS++ GD + + E +S Y+G+
Sbjct: 385 IKRYNKKDVSMVRDRDKKL-LVLELPGVSENRPSVLRGDHLLLTKSEELQNSNVTKYKGY 443
Query: 313 IHRVEADEVHLKFASDFQLNHRDENLYNVQFTYNRVNMRRLYQATD-AAQELDTEFLFPS 371
+HRVE D+V L F+ D ++V+FT NR+ +R ++A Q + LFP
Sbjct: 444 VHRVELDQVKLGFSKRLLERFIDNMKFSVEFTINRLPLRLQHRAVHMVVQHHLKDVLFPV 503
Query: 372 ESSGIRLIESNTLVPISCNL--NEEQMCSIEKILGLKGAP-PYLIYGPPGTGKTMTLVEA 428
S + + + L L N EQ ++ I+ P PYL++GPPGTGKT+T+VEA
Sbjct: 504 ASRRLNPVSPSALRLFDQKLEKNPEQKTAVCNIVAGTSKPAPYLVFGPPGTGKTVTIVEA 563
Query: 429 ILQLYATREDARLLVCAPSNSAADHLLEKILGEKAVEVRENEIFRLNAPSR-PYE----- 482
I Q+ AR+L CAPSNSAAD L EK++ + V+ R I+R+ A SR P E
Sbjct: 564 IKQVEKNTGGARILACAPSNSAADQLGEKLITSQHVDARN--IYRIYASSRNPKEIPKVL 621
Query: 483 ----DVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYAEGVDRGHFSHIFL 538
+V ++I IF C L+ Y+I++ T ++A + + G GHFSHIF+
Sbjct: 622 ENNSNVEGENI--------IFPCK--EDLMPYKIVVCTLVTAGRLVSGGFPVGHFSHIFV 671
Query: 539 DEAGQASEPESMVPISSYCKKDT-VVVLAGDPMQLGPVIYSREAETYGMGKSYLERLF-E 596
DEAG A EPE ++ ++ +T +VLAGDP QLGP++ S A YG+G S LERL +
Sbjct: 672 DEAGHAVEPEIVISVAGLLNAETGQLVLAGDPKQLGPILRSPFAIKYGLGLSLLERLMTQ 731
Query: 597 CEPYCHGN----ENYVTKLVRNYRSHPQILHLPSKLFYEEELIACKDESISCTAYLNF-- 650
E Y G+ YVTKL++NYRSHP IL +P++LFY+ EL AC DE IS Y +
Sbjct: 732 NELYQKGDTGFDNRYVTKLLQNYRSHPSILKVPNELFYDNELKACADE-ISSRQYCTWEH 790
Query: 651 LPNKEFPVLFFGIQGCDEREGSNPSWFNRIEVSKVVEIIQKLTST------GNLSEEDIG 704
LP + FPV+F G+ G DERE ++PS+FN E+ K+++ ++KL T +S +DIG
Sbjct: 791 LPKRGFPVIFHGVVGKDERESTSPSFFNTSEIDKIMDYLKKLLLTQAKKGIAKISPKDIG 850
Query: 705 VITPYRQQV------LKLNKALESLY-MPDIKVGSVEQFQGQERQVIIVSTVRSTIKHND 757
+I PYR+QV +K+++ L+SL + ++KVGSVE+FQGQER+VIIVSTVRS+ +H
Sbjct: 851 IIAPYRKQVEKIRQAIKIHRELKSLSGIEELKVGSVEEFQGQERKVIIVSTVRSSKEHII 910
Query: 758 FDRKHCLGFLSNPRRFNVAVTRAISLLIIIGNPHIVSKDPYWHQLLWYCSDNNSYQGCAL 817
D K +GFL N +RFNVAVTRA +LLI++GNP I+ D W + + YC Y G +
Sbjct: 911 LDDKFNIGFLKNEKRFNVAVTRAKALLIMVGNPIILRTDEIWGRFMNYCIQERGYTGYDI 970
Query: 818 PEREE 822
EE
Sbjct: 971 THLEE 975
>sp|Q0V8H6|MOV10_BOVIN Putative helicase MOV-10 OS=Bos taurus GN=MOV10 PE=2 SV=1
Length = 1003
Score = 419 bits (1076), Expect = e-116, Method: Compositional matrix adjust.
Identities = 278/770 (36%), Positives = 414/770 (53%), Gaps = 77/770 (10%)
Query: 122 MIQPGQTLTIWLSCKPKGIGLHTTVLQFDVED------------RIERVVFLLAEDKISQ 169
++ PG+ + + CK +G + +++ I R + +A ++
Sbjct: 189 LLGPGECYELHVHCKTSFVGYFPATVLWELLGPGEPGSEGAGTFYIARFLAAVAHSPLAA 248
Query: 170 SLASKRPYSRGGRKKQFSVDKYVV-GSRPARYRGQIYQNRLP--RYDIPNHIRELI---- 222
L P+ R + V + + G RP R + + LP Y P +R+L+
Sbjct: 249 QLKPTTPFKRTQVSRNPVVTRRIEEGERPDRAKNYDLEFSLPLGTYYPPPRLRQLLPVLL 308
Query: 223 ----------ERKQIPDAITDGLTLKNYTSFFKTLLIMEEIQLKEDMRAYDMENVTLM-- 270
E +I + L +NY + LL +EE+Q++ D+R YD+E+V +
Sbjct: 309 RGTSIFTAPKEIAEIKAQLQTTLKWRNYEVKLRLLLHLEELQMEHDIRHYDLESVPMTWD 368
Query: 271 ---RKGLYLSLVVPGLAERRPSLVNGDFIFA---KHAYEDTSSAYQGFIHRVEADEVHLK 324
R L+L VPG+AE RPS++ GD +FA + + Y+GF+H+VE D V L
Sbjct: 369 PIDRNPRLLTLEVPGVAESRPSVLRGDHLFALLSSETHHEDPVTYKGFVHKVELDRVKLS 428
Query: 325 FASDFQLNHRDENLYNVQFTYNRVNMRRLYQATDAAQELDTE-FLFPSESSGIRLIESNT 383
F++ D + V FT+NR +R ++A + E LFP S G+ L+ S+
Sbjct: 429 FSTSLLSRFVDGLTFKVNFTFNRQPLRVQHRALELTGRWPLEPMLFPVASRGVPLLPSDV 488
Query: 384 LVPI---SCNLNEEQMCSIEKI-LGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDA 439
+ + S N EQ+ +++ I +G PY+I+GPPGTGKT+TLVEAI Q+ A
Sbjct: 489 KLKLYDRSLESNPEQLQAMKHIVMGTTRPAPYIIFGPPGTGKTVTLVEAIKQVVKHLPKA 548
Query: 440 RLLVCAPSNSAADHLLEKILGEKAVEVRENEIFRLNAPSRPYEDVNADHIRFCFFDEQI- 498
+L CAPSNS AD L +++ V + + I+RL APSR V D C +D +
Sbjct: 549 HILACAPSNSGADLLCQRL----RVHL-PSSIYRLLAPSRDIHLVPEDIKPCCNWDAKKG 603
Query: 499 -FKCPPLAALVCYRIIISTYMSASLIYAEGVDRGHFSHIFLDEAGQASEPESMVPISSYC 557
F P L YR++I+T ++AS + + HF+HIF+DEAG A EPES+V I+
Sbjct: 604 DFVFPSKKKLQEYRVLITTLITASRLVSAQFPIDHFTHIFIDEAGHAMEPESLVAIAGLM 663
Query: 558 KKDTV------VVLAGDPMQLGPVIYSREAETYGMGKSYLERLFECEP-YCHG----NEN 606
+ +VLAGDP QLGPV+ + +G+G S LERL Y G N
Sbjct: 664 EVKEADNPGGQLVLAGDPRQLGPVLRCPLTQKHGLGYSLLERLLTFNALYKKGPDGYNPQ 723
Query: 607 YVTKLVRNYRSHPQILHLPSKLFYEEELIACKDESISCTAYLNF--LPNKEFPVLFFGIQ 664
++TKL+RNYRSHP IL +P++L+Y+ EL AC D + + + LP ++FP++F G+
Sbjct: 724 FITKLLRNYRSHPTILDVPNRLYYDGELQACAD-VVDRERFCRWEGLPRQDFPIIFHGVM 782
Query: 665 GCDEREGSNPSWFNRIEVSKVVEIIQKLTS------TGNLSEEDIGVITPYRQQV----- 713
G DEREG++PS+FN E + V +++L + LS +GVI+PYR+QV
Sbjct: 783 GKDEREGNSPSFFNPEEAATVTSYLKQLLAPSSKKGKARLSPRSVGVISPYRKQVEKIRY 842
Query: 714 --LKLNKALESLY-MPDIKVGSVEQFQGQERQVIIVSTVRSTIKHNDFDRKHCLGFLSNP 770
KL+K L L + D+KVGSVE+FQGQER VI++STVRS+ D LGFL NP
Sbjct: 843 CITKLDKQLRGLDDIKDLKVGSVEEFQGQERSVILISTVRSSQSFVQLDLDFNLGFLKNP 902
Query: 771 RRFNVAVTRAISLLIIIGNPHIVSKDPYWHQLLWYCSDNNSYQGCALPER 820
+RFNVAVTRA +LLI++GNP ++ DP W L +C +N Y GC P +
Sbjct: 903 KRFNVAVTRAKALLIVVGNPLLLGHDPDWKVFLEFCKENGGYTGCPFPAK 952
>sp|Q1LXK5|M10B2_DANRE Putative helicase mov-10-B.2 OS=Danio rerio GN=mov10b.2 PE=3 SV=1
Length = 1015
Score = 417 bits (1073), Expect = e-115, Method: Compositional matrix adjust.
Identities = 252/650 (38%), Positives = 381/650 (58%), Gaps = 34/650 (5%)
Query: 225 KQIPDAITDGLTLKNYTSFFKTLLIMEEIQLKEDMRAYDMENVTLMRK--GLYLSLVVPG 282
K + + LT NY F LL +EE Q+ D++ Y+ ++VTL R + L +PG
Sbjct: 355 KDLQSLLQSPLTFDNYAERFDLLLYLEECQMHVDIKRYNKDSVTLHRDRDKRLMGLNLPG 414
Query: 283 LAERRPSLVNGDFIFAKHAYEDTSS---AYQGFIHRVEADEVHLKFASDFQLN-HRDENL 338
++E RPS++ GD + + E T S Y+G++HRVE D+V L + F + + D+
Sbjct: 415 VSENRPSVLRGDHLLLTKSEEVTFSNVTKYKGYVHRVELDQVKLGLSKRFLKDVYIDKMK 474
Query: 339 YNVQFTYNRVNMRRLYQATD-AAQELDTEFLFPSESSGIRLIESNTLVPISCNL--NEEQ 395
+ V+FT NR+ +R ++A A Q + LFP S + + L L N +Q
Sbjct: 475 FRVEFTVNRIPVRLQHRAVHMAVQHNLKDVLFPMASRSLNPVSPPALRLFDRKLEYNFQQ 534
Query: 396 MCSIEKILGLKGAP-PYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHL 454
++ I+ P PYL++GPPGTGKT+T+VEAI Q+ DA +L CAPSNSAAD L
Sbjct: 535 YSAVCNIVAGTSKPAPYLVFGPPGTGKTVTIVEAIKQVEKNIPDAYILACAPSNSAADQL 594
Query: 455 LEKILGEKAVEVRENEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIII 514
EK++ + V+ ++I+RL A SR +D+ C DE++ P L+ Y+I+I
Sbjct: 595 CEKLITSEHVDA--HKIYRLYASSRNQKDIPKILKDNCNVDEEMIDFPCKEDLMSYKILI 652
Query: 515 STYMSASLIYAEGVDRGHFSHIFLDEAGQASEPESMVPISSYCKKDT-VVVLAGDPMQLG 573
T ++A + G HF+H F+DEAG A E E+++ ++ + +VLAGDP QLG
Sbjct: 653 CTLVTAGRLVTGGFSEDHFTHNFVDEAGHAVESETIISVAGLLNAEKGQLVLAGDPKQLG 712
Query: 574 PVIYSREAETYGMGKSYLERLF-ECEPYCHGN----ENYVTKLVRNYRSHPQILHLPSKL 628
P++ S A +G+ S LERL + + Y G+ YV+KL+ NYRSHP IL +P++L
Sbjct: 713 PILRSPLAINHGLDVSLLERLMTQNDLYKRGDVEFDNRYVSKLIMNYRSHPYILEVPNRL 772
Query: 629 FYEEELIACKDESISCTAYLNF--LPNKEFPVLFFGIQGCDEREGSNPSWFNRIEVSKVV 686
FY+ EL AC DE IS Y + LP+K FPV+F G+ G DERE ++PS+FN E++ +V
Sbjct: 773 FYDGELKACADE-ISSNQYCMWEHLPSKGFPVIFHGVPGKDERESNSPSFFNIYEINILV 831
Query: 687 EIIQKLTST------GNLSEEDIGVITPYRQQVLKLNKALES-------LYMPDIKVGSV 733
+ ++KL T + +DIG+I PYR+QV K+ +A+++ + + ++KVGSV
Sbjct: 832 DYLKKLLLTQPKKGISRIFPKDIGIIAPYRKQVEKIKRAIDADKDFQDYMGIDNLKVGSV 891
Query: 734 EQFQGQERQVIIVSTVRSTIKHNDFDRKHCLGFLSNPRRFNVAVTRAISLLIIIGNPHIV 793
E+FQGQER+VI+VSTVRS++K+ D +GFL N +RFNVAVTRA SLLI++GNP I+
Sbjct: 892 EEFQGQERKVIMVSTVRSSVKYISLDETFNIGFLKNEKRFNVAVTRAKSLLIMVGNPMIL 951
Query: 794 SKDPYWHQLLWYCSDNNSYQGCALPEREEFADEDPTAAECWNHEEEIPQS 843
D W + + +C + Y G ++ E D + +EE +S
Sbjct: 952 RTDESWGRFIDFCLERGGYTGISITSVERIDDVESRLLALNIQDEETEES 1001
>sp|P23249|MOV10_MOUSE Putative helicase MOV-10 OS=Mus musculus GN=Mov10 PE=1 SV=2
Length = 1004
Score = 405 bits (1040), Expect = e-112, Method: Compositional matrix adjust.
Identities = 285/820 (34%), Positives = 426/820 (51%), Gaps = 79/820 (9%)
Query: 123 IQPGQTLTIWLSCKPKGIGLHTTVLQFDVED------------RIERVVFLLAEDKISQS 170
+ PG++ + + CK +G + +++ I R + +A ++
Sbjct: 190 LGPGESYELHIYCKTSIVGYFPATVLWELLGPGESGAEGAETFYIARFLAAVAHSPLAAQ 249
Query: 171 LASKRPYSRGGRKKQFSV--DKYVVGSRPARYRGQIYQNRLP----------------RY 212
L P+ R R + SV ++ G RP R +G + L
Sbjct: 250 LKPTTPFKRPPRLTRNSVLTNRIEEGERPDRAKGYELELSLALGTYYPPILLRQLLPTLL 309
Query: 213 DIPNHIRELIERKQIPDAITDGLTLKNYTSFFKTLLIMEEIQLKEDMRAYDMENVTLM-- 270
P+ E +I + L +NY + LL +EE+Q++ D+R YD+++V +
Sbjct: 310 QGPSIFTAPKEVAEIKAQLETTLKSRNYEVKLRLLLHLEELQMEHDIRHYDLDSVPMTWD 369
Query: 271 ---RKGLYLSLVVPGLAERRPSLVNGDFIFA---KHAYEDTSSAYQGFIHRVEADEVHLK 324
+ L+L VPG+AE RPS++ GD +FA +D Y+GF+H+VE D V L
Sbjct: 370 PVDQNPRLLTLEVPGVAESRPSVLRGDHLFALLSSETQQDDPVTYKGFVHKVELDRVKLS 429
Query: 325 FASDFQLNHRDENLYNVQFTYNRVNMRRLYQATD-AAQELDTEFLFPSESSGIRLIESNT 383
F++ D + V FT+NR +R ++A + + + LFP S G+ L+ S+
Sbjct: 430 FSTSLLSRFVDGLTFKVNFTFNRQPLRVQHRALELTGRWVLWPMLFPVASRGVSLLPSDV 489
Query: 384 ---LVPISCNLNEEQMCSIEKIL-GLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDA 439
L S N EQ+ +++ I+ G PY+I+GPPGTGKT+TLVEAI Q+ A
Sbjct: 490 KFKLYDRSLESNPEQLQAMKHIVRGTTRPAPYIIFGPPGTGKTVTLVEAIKQVVKHLPKA 549
Query: 440 RLLVCAPSNSAADHLLEKILGEKAVEVRENEIFRLNAPSRPYEDVNADHIRFCFFDEQI- 498
+L CAPSNS AD L +++ V + + I+RL APSR V D C +D +
Sbjct: 550 HILACAPSNSGADLLCQRL----RVHL-PSSIYRLLAPSRDIRMVPEDIKTCCNWDAKKG 604
Query: 499 -FKCPPLAALVCYRIIISTYMSASLIYAEGVDRGHFSHIFLDEAGQASEPESMVPISSYC 557
+ P L YR++I+T ++AS + + HF+HIF+DEAG EPES+V I+
Sbjct: 605 EYVYPAKKHLQQYRVLITTLITASRLVSAQFPIDHFTHIFIDEAGHCMEPESLVAIAGLM 664
Query: 558 K-KDT-----VVVLAGDPMQLGPVIYSREAETYGMGKSYLERLFECEP-YCHGNENY--- 607
K+T +VLAGDP QLGPV+ S A +G+G S LERL Y G Y
Sbjct: 665 DVKETGNPGGQLVLAGDPRQLGPVLRSPLALKHGLGYSLLERLLAYNSLYKKGPNGYDPQ 724
Query: 608 -VTKLVRNYRSHPQILHLPSKLFYEEELIACKDESISCTAYLNF--LPNKEFPVLFFGIQ 664
+TKL+RNYRSHP IL +P++L+Y+ EL AC D + + + LP + FP++F G+
Sbjct: 725 FITKLLRNYRSHPTILDIPNQLYYDGELQACAD-VVDRERFCRWEGLPQQGFPIIFHGVM 783
Query: 665 GCDEREGSNPSWFNRIEVSKVVEIIQKLTS------TGNLSEEDIGVITPYRQQV----- 713
G DEREG++PS+FN E + V +++L + LS ++GVI+PYR+QV
Sbjct: 784 GKDEREGNSPSFFNPEEAATVTSYLKQLLAPSSKKGKARLSPRNVGVISPYRKQVEKIRY 843
Query: 714 --LKLNKALESLY-MPDIKVGSVEQFQGQERQVIIVSTVRSTIKHNDFDRKHCLGFLSNP 770
KL++ L L + D+KVGSVE+FQGQER VI++STVRS+ D LGFL NP
Sbjct: 844 CITKLDRELRGLDDIKDLKVGSVEEFQGQERSVILISTVRSSQSFVQLDLDFNLGFLKNP 903
Query: 771 RRFNVAVTRAISLLIIIGNPHIVSKDPYWHQLLWYCSDNNSYQGCALPEREEFADEDPTA 830
+RFNVAVTRA +LLI++GNP ++ DP W L +C +N Y GC P + +
Sbjct: 904 KRFNVAVTRAKALLIVVGNPLLLGHDPDWKTFLEFCKENGGYTGCPFPAKLDLQQGQDLL 963
Query: 831 AECWNHEEEIPQSFQEDNWNQEPFQAENLKPVKDEDEWSD 870
+ N QE + E P++ E EW +
Sbjct: 964 QGLSKLSPSTSGPRRHQNLPQE-REGEGGLPLQVEPEWRN 1002
>sp|Q9HCE1|MOV10_HUMAN Putative helicase MOV-10 OS=Homo sapiens GN=MOV10 PE=1 SV=2
Length = 1003
Score = 399 bits (1025), Expect = e-110, Method: Compositional matrix adjust.
Identities = 272/727 (37%), Positives = 395/727 (54%), Gaps = 69/727 (9%)
Query: 155 IERVVFLLAEDKISQSLASKRPYSRGGRKKQFSVDKYVV-GSRPARYRGQIYQ--NRLPR 211
I R + +A ++ L P+ R V + G RP R +G + L
Sbjct: 234 IARFLAAVAHSPLAAQLKPMTPFKRTRITGNPVVTNRIEEGERPDRAKGYDLELSMALGT 293
Query: 212 YDIPNHIRELI--------------ERKQIPDAITDGLTLKNYTSFFKTLLIMEEIQLKE 257
Y P +R+L+ E +I + L +NY + LL +EE+Q++
Sbjct: 294 YYPPPRLRQLLPMLLQGTSIFTAPKEIAEIKAQLETALKWRNYEVKLRLLLHLEELQMEH 353
Query: 258 DMRAYDMENVTLM-----RKGLYLSLVVPGLAERRPSLVNGDFIFA---KHAYEDTSSAY 309
D+R YD+E+V + + L+L VPG+ E RPS++ GD +FA +++ Y
Sbjct: 354 DIRHYDLESVPMTWDPVDQNPRLLTLEVPGVTESRPSVLRGDHLFALLSSETHQEDPITY 413
Query: 310 QGFIHRVEADEVHLKFASDFQLNHRDENLYNVQFTYNRVNMRRLYQATD-AAQELDTEFL 368
+GF+H+VE D V L F+ D + V FT+NR +R ++A + + L L
Sbjct: 414 KGFVHKVELDRVKLSFSMSLLSRFVDGLTFKVNFTFNRQPLRVQHRALELTGRWLLWPML 473
Query: 369 FPSESSGIRLIESNTLVPI---SCNLNEEQMCSIEKIL-GLKGAPPYLIYGPPGTGKTMT 424
FP + L+ S+ + + S N EQ+ ++ I+ G PY+I+GPPGTGKT+T
Sbjct: 474 FPVAPRDVPLLPSDVKLKLYDRSLESNPEQLQAMRHIVTGTTRPAPYIIFGPPGTGKTVT 533
Query: 425 LVEAILQLYATREDARLLVCAPSNSAADHLLEKILGEKAVEVRENEIFRLNAPSRPYEDV 484
LVEAI Q+ A +L CAPSNS AD L +++ V + + I+RL APSR V
Sbjct: 534 LVEAIKQVVKHLPKAHILACAPSNSGADLLCQRL----RVHL-PSSIYRLLAPSRDIRMV 588
Query: 485 NADHIRFCFFD----EQIFKCPPLAALVCYRIIISTYMSASLIYAEGVDRGHFSHIFLDE 540
D C +D E +F P L YR++I+T ++A + + HF+HIF+DE
Sbjct: 589 PEDIKPCCNWDAKKGEYVF--PAKKKLQEYRVLITTLITAGRLVSAQFPIDHFTHIFIDE 646
Query: 541 AGQASEPESMVPISSYCK-KDT-----VVVLAGDPMQLGPVIYSREAETYGMGKSYLERL 594
AG EPES+V I+ + K+T +VLAGDP QLGPV+ S + +G+G S LERL
Sbjct: 647 AGHCMEPESLVAIAGLMEVKETGDPGGQLVLAGDPRQLGPVLRSPLTQKHGLGYSLLERL 706
Query: 595 FECEP-YCHGNENY----VTKLVRNYRSHPQILHLPSKLFYEEELIACKDESISCTAYLN 649
Y G + Y +TKL+RNYRSHP IL +P++L+YE EL AC D + +
Sbjct: 707 LTYNSLYKKGPDGYDPQFITKLLRNYRSHPTILDIPNQLYYEGELQACAD-VVDRERFCR 765
Query: 650 F--LPNKEFPVLFFGIQGCDEREGSNPSWFNRIEVSKVVEIIQKLTS------TGNLSEE 701
+ LP + FP++F G+ G DEREG++PS+FN E + V ++ L + LS
Sbjct: 766 WAGLPRQGFPIIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKLLLAPSSKKGKARLSPR 825
Query: 702 DIGVITPYRQQV-------LKLNKALESLY-MPDIKVGSVEQFQGQERQVIIVSTVRSTI 753
+GVI+PYR+QV KL++ L L + D+KVGSVE+FQGQER VI++STVRS+
Sbjct: 826 SVGVISPYRKQVEKIRYCITKLDRELRGLDDIKDLKVGSVEEFQGQERSVILISTVRSSQ 885
Query: 754 KHNDFDRKHCLGFLSNPRRFNVAVTRAISLLIIIGNPHIVSKDPYWHQLLWYCSDNNSYQ 813
D LGFL NP+RFNVAVTRA +LLII+GNP ++ DP W L +C +N Y
Sbjct: 886 SFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIIVGNPLLLGHDPDWKVFLEFCKENGGYT 945
Query: 814 GCALPER 820
GC P +
Sbjct: 946 GCPFPAK 952
>sp|Q9BXT6|M10L1_HUMAN Putative helicase Mov10l1 OS=Homo sapiens GN=MOV10L1 PE=1 SV=1
Length = 1211
Score = 369 bits (947), Expect = e-101, Method: Compositional matrix adjust.
Identities = 208/445 (46%), Positives = 285/445 (64%), Gaps = 29/445 (6%)
Query: 391 LNEEQMCSIEKILGLKGAP-PYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNS 449
LNE Q ++++IL P PY+++GPPGTGKT+T++EA+LQ++ D+R+LVCAPSNS
Sbjct: 745 LNENQKLAVKRILSGDCRPLPYILFGPPGTGKTVTIIEAVLQVHFALPDSRILVCAPSNS 804
Query: 450 AADHLLEKILGEKAVEVRENEIFRLNAPSRPYEDVNADHIR-FCFFDEQIFKCPPLAALV 508
AAD + ++ K ++ + R+NA R +E++ D ++ +C E I+K
Sbjct: 805 AADLVCLRLHESKVLQ--PATMVRVNATCR-FEEIVIDAVKPYCRDGEDIWKASR----- 856
Query: 509 CYRIIISTYMSASLIYAEGVDRGHFSHIFLDEAGQASEPESMVPISSYCKKDTVVVLAGD 568
+RIII+T S+ L Y GV GHF+H+F+DEAGQASEPE ++P+ +VLAGD
Sbjct: 857 -FRIIITTCSSSGLFYQIGVRVGHFTHVFVDEAGQASEPECLIPLGLMSDISGQIVLAGD 915
Query: 569 PMQLGPVIYSREAETYGMGKSYLERLFECEPYCHGNEN-----------YVTKLVRNYRS 617
PMQLGPVI SR A YG+ S+LERL P +EN VTKLV+NYRS
Sbjct: 916 PMQLGPVIKSRLAMAYGLNVSFLERLMS-RPAYQRDENAFGACGAHNPLLVTKLVKNYRS 974
Query: 618 HPQILHLPSKLFYEEELIACKDESISCTAYLNF--LPNKEFPVLFFGIQGCDEREGSNPS 675
H +L LPS+LFY EL C D ++ T+ L + LP K FP++F G++G + REG +PS
Sbjct: 975 HEALLMLPSRLFYHRELEVCADPTV-VTSLLGWEKLPKKGFPLIFHGVRGSEAREGKSPS 1033
Query: 676 WFNRIEVSKVVEIIQKLTS--TGNLSEEDIGVITPYRQQVLKLNKALESLYMPDIKVGSV 733
WFN E +V+ L + +S DIGVITPYR+QV K+ L ++ + DIKVGSV
Sbjct: 1034 WFNPAEAVQVLRYCCLLAHSISSQVSASDIGVITPYRKQVEKIRILLRNVDLMDIKVGSV 1093
Query: 734 EQFQGQERQVIIVSTVRSTIKHNDFDRKHCLGFLSNPRRFNVAVTRAISLLIIIGNPHIV 793
E+FQGQE VII+STVRS + DR + LGFLSN +RFNVA+TR +LLI++GNPH++
Sbjct: 1094 EEFQGQEYLVIIISTVRSNEDRFEDDR-YFLGFLSNSKRFNVAITRPKALLIVLGNPHVL 1152
Query: 794 SKDPYWHQLLWYCSDNNSYQGCALP 818
+DP + LL Y N Y GC LP
Sbjct: 1153 VRDPCFGALLEYSITNGVYMGCDLP 1177
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/320 (27%), Positives = 137/320 (42%), Gaps = 33/320 (10%)
Query: 65 DSITIKNTTREPVELWSKIYASTPENTFTLSVMKPPSPGSDSGTNRGFVEFFTLEERMIQ 124
+S + N P + K +N + M P PG ++
Sbjct: 364 ESSLVNNRGISPGDCTCKGENGEKDNILSRKQMTEPEPGG-----------------LVP 406
Query: 125 PGQTLTIWLSCKPKGIGLHTTVLQFDVED----RIERVVFLLAEDKISQSLASKRPYSRG 180
PG I + C K G +L D R V + E+ + +A++ P+S
Sbjct: 407 PGGKTFIVVICDGKNPGRCKELLLLCFSDFLIGRYLEVNVISGEESL---IAAREPFSWK 463
Query: 181 GRKKQ---FSVDKYVVGSRPARYRGQIYQNRLPRYDIPNHIRELIERK----QIPDAITD 233
K S VV + R + + LP+Y IP+ +R+ +E+K + +
Sbjct: 464 KLKSSQALTSAKTTVVVTAQKRNSRRQLPSFLPQYPIPDRLRKCVEQKIDILTFQPLLAE 523
Query: 234 GLTLKNYTSFFKTLLIMEEIQLKEDMRAYDMENVTLMRKGLYLSLVVPGLAERRPSLVNG 293
L + NY F TLL +EEI + +++ Y+M + L R G L L VPGLAE RPSL G
Sbjct: 524 LLNMSNYKEKFSTLLWLEEIYAEMELKEYNMSGIILRRNGDLLVLEVPGLAEGRPSLYAG 583
Query: 294 D-FIFAKHAYEDTSSAYQGFIHRVEADEVHLKFASDFQLNHRDENLYNVQFTYNRVNMRR 352
D I Y + Y ++ + ++V LK +F+ + E + +V+FTYNR RR
Sbjct: 584 DKLILKTQEYNGHAIEYISYVTEIHEEDVTLKINPEFEQAYNFEPM-DVEFTYNRTTSRR 642
Query: 353 LYQATDAAQELDTEFLFPSE 372
+ A + L + LFP E
Sbjct: 643 CHFALEHVIHLGVKVLFPEE 662
>sp|Q6J5K9|ARMI_DROME Probable RNA helicase armi OS=Drosophila melanogaster GN=armi PE=2
SV=3
Length = 1274
Score = 366 bits (940), Expect = e-100, Method: Compositional matrix adjust.
Identities = 262/800 (32%), Positives = 411/800 (51%), Gaps = 116/800 (14%)
Query: 118 LEERMIQPGQTLTIWLSCKPKGIG--LHTTVLQFDVEDRIERVVFLLAEDKISQSLASKR 175
LE + I G +T+ + +G + VL FD+ R VF + K + +A
Sbjct: 466 LESKEISSGSEITVTFEIHTQFLGEAIEKYVLNFDLLKV--RRVFTVIVCKTKEEVAE-- 521
Query: 176 PYSRGGRKKQFSVDKYVVGSRPARYRGQIYQN------------------------RLPR 211
K+ + + + R ++ R + Y N RL
Sbjct: 522 -----AEKRMIAAEALMAPGRNSQERSRFYANQVWCNKVDVIPGQQIVTKRRFVALRLGC 576
Query: 212 YDIPNHIRELI----ERKQIPDAI-------TDGLTLKNYTSFFKTLLIMEEIQLKEDMR 260
+++P +R++ R+++ AI T+ L++K Y F+ LL +EEI+ + R
Sbjct: 577 FEVPKELRQICLTSERRQEMIKAIEQHYSFLTEPLSIKTYMHRFRLLLHLEEIECFVNFR 636
Query: 261 AYDMENVTLMRKGLYLSLVVPGLAERRPSLVNGDFIFAKHAYED----TSSAYQGFIHRV 316
YD + +R G +L+L + LAERRPSLV GD + + + D T+ +Y+G IH+V
Sbjct: 637 NYDRDRAHFLRDGEFLTLQIENLAERRPSLVIGDTLRVINPWSDPDSQTTKSYEGIIHKV 696
Query: 317 EADEVHLKFASDFQLNHRDENLYNVQFTYNRVNMRRLYQA-TDAAQELDTEFLFPSESS- 374
D + LKF S FQ + E+ Y ++F ++R + R+ + A + + +FLFPS+ +
Sbjct: 697 LFDRILLKFHSSFQEKYNGED-YRLEFYFSRYSFRKQHHAISKIVGVMGEDFLFPSKVTK 755
Query: 375 -------------GIRLIESNTLVPISCNLNEEQMCSIEKIL-GLKGAPPYLIYGPPGTG 420
+ L +S L + +LN Q ++ IL G PY+++GPPG+G
Sbjct: 756 RENPQLDVYMKDDDMYLYDSK-LEWYNQSLNSIQKRAVFNILRGEAENIPYVLFGPPGSG 814
Query: 421 KTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILGEKAVEVRENEIFRLNAPSRP 480
KTMTL+E +LQL AR+LV PSNS+AD + ++++ KA+ + + RL + ++
Sbjct: 815 KTMTLIETLLQLVRNLPGARILVGTPSNSSADLVTKRLIDSKAL--LQGDFIRLVSYNQV 872
Query: 481 YEDVNADHI-RFC---------------FFDEQIFKCPPLAALV-CYRIIISTYMSASLI 523
+D+ I +C E K A + +RI IST +
Sbjct: 873 EKDLIPPEIMSYCATSDVGAVGSCEDKMMVTESGLKLRCQAKFIGTHRITISTCTTLGNF 932
Query: 524 YAEGVDRGHFSHIFLDEAGQASEPESMVPISSYCKKDTVVVLAGDPMQLGPVIYSREAET 583
G GHF+H+ DEAGQ +EPE+MVPI KK + VVL+GDP QL ++ SR A
Sbjct: 933 LQLGFPAGHFTHVLFDEAGQCTEPETMVPIVMLTKKRSQVVLSGDPRQLQSIVTSRIASK 992
Query: 584 YGMGKSYLERLFECEPYCHGNENY----------VTKLVRNYRSHPQILHLPSKLFYEEE 633
G S+LERL E PY + + +TKL+ NYR+ P I+ + S+LFY++E
Sbjct: 993 MGFSISFLERLLERSPYRKDLQRFPESSGYNPLVLTKLLYNYRALPSIMSIYSRLFYDDE 1052
Query: 634 LIACKDESISCTAYL------NFLPNKEFP----VLFFGIQGCDEREGSNPSWFNRIEVS 683
LI E S + L F K+ P F+GI G + + +PSWFN EV
Sbjct: 1053 LIPVLSEKDSRESRLLSKLRCVFESEKDIPQAHGTFFYGIIGENRQNNDSPSWFNPQEVR 1112
Query: 684 KVVEIIQKLTSTGNLSEEDIGVITPYRQQVLKLNKALESLYM-PDI---KVGSVEQFQGQ 739
+V + L N++ + IG+ITPY++QV K L S+++ D+ K+GSVE+FQGQ
Sbjct: 1113 EVFLMTIALYR-ANVTADQIGIITPYQKQV----KMLRSMFIGTDVVMPKIGSVEEFQGQ 1167
Query: 740 ERQVIIVSTVRSTIKHNDFDRKHCLGFLSNPRRFNVAVTRAISLLIIIGNPHIVSKDPYW 799
ER +I++STVRS+ + D + LGF+ +R NVAV+RA +++II GNPH+++ D W
Sbjct: 1168 ERDIILISTVRSSEEILRMDARFSLGFVRCSKRLNVAVSRARAMMIIFGNPHLLAVDECW 1227
Query: 800 HQLLWYCSDNNSYQGCALPE 819
QL+ +C NN+Y GC LP+
Sbjct: 1228 RQLILFCVKNNAYFGCDLPQ 1247
>sp|Q99MV5|M10L1_MOUSE Putative helicase Mov10l1 OS=Mus musculus GN=Mov10l1 PE=1 SV=1
Length = 1187
Score = 363 bits (931), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 205/444 (46%), Positives = 281/444 (63%), Gaps = 27/444 (6%)
Query: 391 LNEEQMCSIEKILGLKGAP-PYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNS 449
LNE Q ++ +IL P PY+++GPPGTGKT+T++EA+LQ++ D+R+LVCAPSNS
Sbjct: 747 LNENQKLAVRRILSGDCRPLPYILFGPPGTGKTVTIIEAVLQVHYALPDSRILVCAPSNS 806
Query: 450 AADHLLEKILGEKAVEVRENEIFRLNAPSRPYEDVNADHIR-FCFFDEQIFKCPPLAALV 508
AAD + ++ K + + R+NA R +E+ D I+ +C E I++
Sbjct: 807 AADLVCLRLHESKVP--KPAAMVRVNATCR-FEETIIDAIKPYCRDGEDIWRASR----- 858
Query: 509 CYRIIISTYMSASLIYAEGVDRGHFSHIFLDEAGQASEPESMVPISSYCKKDTVVVLAGD 568
+RIII+T SA L Y GV G+F+H+F+DEAGQASEPE ++P+ + +VLAGD
Sbjct: 859 -FRIIITTCSSAGLFYQIGVRVGYFTHVFVDEAGQASEPECLIPLGLISDINGQIVLAGD 917
Query: 569 PMQLGPVIYSREAETYGMGKSYLERLFECEPYCHGNENY----------VTKLVRNYRSH 618
PMQLGPVI SR A YG+ S LERL Y + VTKLV+NYRSH
Sbjct: 918 PMQLGPVIKSRLAMAYGLNVSMLERLMSRPAYLRDENAFGACGAYNPLLVTKLVKNYRSH 977
Query: 619 PQILHLPSKLFYEEELIACKDESISCTAYLNF--LPNKEFPVLFFGIQGCDEREGSNPSW 676
+L LPS+LFY EL C D + T+ L + LP K FP++F G++G + REG +PSW
Sbjct: 978 SALLALPSRLFYHRELEVCADPKV-VTSLLGWEKLPRKGFPLIFHGVRGNEAREGRSPSW 1036
Query: 677 FNRIEVSKVVEIIQKL--TSTGNLSEEDIGVITPYRQQVLKLNKALESLYMPDIKVGSVE 734
F+ E +V+ L + + +S +DIGVITPYR+QV K+ L ++ + DIKVGSVE
Sbjct: 1037 FSPAEAVQVMRYCCLLARSVSSQVSSKDIGVITPYRKQVEKIKILLRNVDLTDIKVGSVE 1096
Query: 735 QFQGQERQVIIVSTVRSTIKHNDFDRKHCLGFLSNPRRFNVAVTRAISLLIIIGNPHIVS 794
+FQGQE VI++STVRS + DR + LGFLSN +RFNVA+TR +LLII+GNPH++
Sbjct: 1097 EFQGQEYLVIVISTVRSNEDRFEDDR-YFLGFLSNSKRFNVAITRPKALLIILGNPHVLV 1155
Query: 795 KDPYWHQLLWYCSDNNSYQGCALP 818
+DP + LL Y N Y GC LP
Sbjct: 1156 RDPCFGALLEYSVSNGVYTGCDLP 1179
Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 125/263 (47%), Gaps = 16/263 (6%)
Query: 122 MIQPGQTLTIWLSCKPKGIGLHTTVLQFDVED----RIERVVFLLAEDKISQSLASKRPY 177
+I PG+ I ++C K G +L D R V + +E+ + +A + P+
Sbjct: 344 LIPPGEKTHIVVTCSAKNPGRCKELLLLCFSDFLIGRHLEVSVVSSEEAL---IAVREPF 400
Query: 178 SRGGRKKQ---FSVDKYVVGSRPARYRGQIYQNRLPRYDIPNHIRELIERK----QIPDA 230
S K S VV + R + + LP+Y IP+ +++ +E+K
Sbjct: 401 SWKKPKSSQTLVSAKTTVVVTTQKRNSRRQLPSFLPQYPIPDRLKKCVEQKIDILTFQPL 460
Query: 231 ITDGLTLKNYTSFFKTLLIMEEIQLKEDMRAYDMENVTLMRKGLYLSLVVPGLAERRPSL 290
+ + L + NY F TLL +EEI + +++ Y+M V L RKG L L VPGLAE RPSL
Sbjct: 461 LAELLNMSNYKEKFSTLLWLEEIHAEIELKEYNMSRVVLKRKGDLLVLEVPGLAESRPSL 520
Query: 291 VNGD-FIFAKHAYEDTSSAYQGFIHRVEADEVHLKFASDFQLNHRDENLYNVQFTYNRVN 349
GD I Y Y G++ + ++V LK F+ + E + +V+FTYNR
Sbjct: 521 YAGDKLILKSQEYNGHVIEYIGYVMEIHEEDVTLKLNPGFEQMYNFEPM-DVEFTYNRTT 579
Query: 350 MRRLYQATDAAQELDTEFLFPSE 372
RR + A + L + LFP E
Sbjct: 580 SRRCHYALEQVIHLGVKVLFPEE 602
>sp|Q6NYU2|HELZ_DANRE Probable helicase with zinc finger domain OS=Danio rerio GN=helz PE=2
SV=1
Length = 1860
Score = 201 bits (511), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 192/686 (27%), Positives = 302/686 (44%), Gaps = 120/686 (17%)
Query: 219 RELIERKQIP---------DAITDGLTLKNYTSFFKTLLIMEEIQLKEDMRAYDMENVTL 269
R L+ R QIP + LT NY LL +EEI +++ ++++
Sbjct: 417 RSLLTRYQIPLSADQLFTQSVLDKTLTRDNYQPRLHDLLYIEEIAQYKEVTKFNIKVNLQ 476
Query: 270 MRKGLYLSLVVPGLAERRPSLVNGDFIFAKHAYEDTSSA--------------------- 308
+ L+ + G + + F + EDT +
Sbjct: 477 LVTSFMLTGISGGAKYAQNGQLFARFKLTETLSEDTLAGRLVMTKVNSVLLLPVFKERMG 536
Query: 309 -----------YQGFIHRVEADEVHLKFASD----FQLNHRDENLYNVQFTYNRVNMRRL 353
Y+ I D + L+ + L E +QF NR+ + +
Sbjct: 537 QNQPAGAKERVYEALIEEKTKDYIFLRVCKECCDELGLVADQELQVELQFQLNRLPLCEM 596
Query: 354 YQATDAAQELDTEFLFPSESSGIRLIESNTLVPISCN----------LNEEQMCSIEKIL 403
+ A D + D LFP I +P S N LN +Q E IL
Sbjct: 597 HYALDRVR--DNSILFPD-------ISLTPTIPWSPNRQWDEQLDPRLNAKQK---EAIL 644
Query: 404 GLK-----GAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKI 458
+ PP LI GP GTGKT TL +A+ + E +R+L+C SNSAAD ++
Sbjct: 645 AITTPLSINLPPVLIIGPYGTGKTFTLAQAVKHILKQPE-SRVLICTHSNSAADLYIKDY 703
Query: 459 LGEKAVEVRENEI--FRLNAPSRPYEDVNADHIRFCFFDEQ--IFKCPPLAALVCYRIII 514
L VE R+ +R + V+ ++C F+ P + +R+++
Sbjct: 704 L-HPYVEAGNPHARPLRVYFRNRWVKTVHPLVQQYCLISGAHFTFQMPTRQDVERHRVVV 762
Query: 515 STYMSASLIYAEGVDRGHFSHIFLDEAGQASEPESMVPISSYCKKDTVVVLAGDPMQLGP 574
T ++ + ++ G F+HI LDEA QA E E+++P++ K T VVLAGD MQL P
Sbjct: 763 VTLSTSQYLCQLDLEPGIFTHILLDEAAQAMECETIMPLA-LAVKSTRVVLAGDHMQLSP 821
Query: 575 VIYSREAETYGMGKSYLERLFECEPYCHGNENYVTK--LVRNYRSHPQILHLPSKLFYEE 632
+YS A + S L+RL+E H Y + L NYRSH I++ S LFYE
Sbjct: 822 FVYSEFARERNLHVSLLDRLYE-----HYPSEYPCRILLCENYRSHEAIINYTSDLFYEG 876
Query: 633 ELIACKDESISCTAYLNFLPNKEF-PVLFFGIQGCDEREGSNPSWFNRIEVSKVVEIIQK 691
+L+A + P+K+F P+ FF +G D +E ++ +++N EV ++VE +++
Sbjct: 877 KLMASGKQP----------PHKDFYPLTFFTARGEDVQEKNSTAYYNNAEVFEIVERVEE 926
Query: 692 L-----TSTGNLSEEDIGVITPYRQQVLKLNKALESLYMPDIKVGSVEQFQGQERQVIIV 746
+ S G L E IGV++PY QV ++ L M ++ V V QG++ +V+ +
Sbjct: 927 MRKKWPVSWGKLEEGSIGVVSPYADQVFRIRAELRKKRMSEVSVERVLNVQGKQFRVLFL 986
Query: 747 STVRS--TIKHND--FDRKHCL----------GFLSNPRRFNVAVTRAISLLIIIGNPHI 792
STVR+ T KH RK L GFLSN + N A+TRA SL+ ++G+P
Sbjct: 987 STVRTRHTCKHKQTAIKRKEQLVEDSTEDLDYGFLSNYKLLNTAITRAQSLVAVVGDPIA 1046
Query: 793 VSK----DPYWHQLLWYCSDNNSYQG 814
+ +W + C +N+S G
Sbjct: 1047 LCSVGRCRKFWETFISICHENHSLHG 1072
>sp|Q9HEH1|RENT1_NEUCR Regulator of nonsense transcripts 1 homolog OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=2E4.130 PE=3 SV=1
Length = 1093
Score = 200 bits (509), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 155/463 (33%), Positives = 223/463 (48%), Gaps = 72/463 (15%)
Query: 385 VPISCNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVC 444
VP LN Q+ +I+++L P LI GPPGTGKT+T I L A ++++LVC
Sbjct: 450 VPGLPELNASQIAAIKQVLS---NPLSLIQGPPGTGKTVTSATIIYHL-AKMSNSQVLVC 505
Query: 445 APSNSAADHLLEKI--LGEKAVEVRENEIFRLNAPSRPYEDVNADHIRFCFFDEQI---F 499
APSN A D L E+I G K V RL A SR EDV + + F EQ+
Sbjct: 506 APSNVAVDQLCERIHRTGLKVV--------RLTAKSR--EDVESS-VSFLALHEQVRMNT 554
Query: 500 KCPPLAALVCYRIIISTYMS--------------------ASLIYAEGVDRG-------H 532
L LV + S A ++ V G
Sbjct: 555 TNKELDGLVKLKTETGELSSQDEKRFKQLTRQAEREILQNADVVCCTCVGAGDPRLSKMK 614
Query: 533 FSHIFLDEAGQASEPESMVPISSYCKKDTVVVLAGDPMQLGPVIYSREAETYGMGKSYLE 592
F ++ +DE+ Q++EPE M+P+ CK+ VVL GD QLGPVI +++A G+ +S E
Sbjct: 615 FRNVLIDESTQSAEPECMIPLVLGCKQ---VVLVGDHKQLGPVIMNKKAAKAGLNQSLFE 671
Query: 593 RLFECEPYCHGNENYVTKLVRNYRSHPQILHLPSKLFYEEELIACKDESISCTAYLNF-L 651
RL + + +L YR HP + PS +FYE L + ++F
Sbjct: 672 RLVKLQ-------FTPIRLKVQYRMHPCLSEFPSNMFYEGSLQNGVTAAERLRKDVDFPW 724
Query: 652 PNKEFPVLFFGIQGCDEREGSNPSWFNRIEVSKVVEIIQKLTSTGNLSEEDIGVITPYRQ 711
P E P++F+ G +E S S+ NR E + V +I+ + G + DIGVITPY
Sbjct: 725 PVPETPMMFWSNLGNEEISASGTSYLNRTEAANVEKIVTRFFKAG-VKPADIGVITPYEG 783
Query: 712 Q------VLKLNKALESLYMPDIKVGSVEQFQGQERQVIIVSTVRSTIKHNDFDRKHCLG 765
Q ++ + +++V SV+ FQG+E+ I++S VRS + +G
Sbjct: 784 QRSYIVNTMQNTGTFKKESYREVEVASVDAFQGREKDFIVLSCVRS-------NENQGIG 836
Query: 766 FLSNPRRFNVAVTRAISLLIIIGNPHIVSKDPYWHQLLWYCSD 808
FLS+PRR NVA+TRA L+IIGNP ++ K WH LL + D
Sbjct: 837 FLSDPRRLNVALTRAKYGLVIIGNPKVLCKHELWHHLLVHFKD 879
>sp|Q9VYS3|RENT1_DROME Regulator of nonsense transcripts 1 homolog OS=Drosophila
melanogaster GN=Upf1 PE=1 SV=2
Length = 1180
Score = 199 bits (505), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 148/456 (32%), Positives = 225/456 (49%), Gaps = 69/456 (15%)
Query: 390 NLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNS 449
+LN Q+ +++ L P LI GPPGTGKT+T + QL +LVCAPSN+
Sbjct: 451 DLNRSQVYAVKHALQ---RPLSLIQGPPGTGKTVTSATIVYQLVKL-HGGTVLVCAPSNT 506
Query: 450 AADHLLEKILGEKAVEVR------------------ENEIFRL--NAPSRPYEDVNADHI 489
A D L EKI VR N+I + N+ + + + +
Sbjct: 507 AVDQLTEKIHRTNLKVVRVCAKSREAIDSPVSFLALHNQIRNMETNSELKKLQQLKDETG 566
Query: 490 RFCFFDEQIFKCPPLAA----LVCYRIIISTYMSASLIYAEG-VDRGHFSHIFLDEAGQA 544
DE+ ++ AA L +I T + A +G + R F+ I +DE+ Q+
Sbjct: 567 ELSSADEKRYRNLKRAAENQLLEAADVICCTCVGA----GDGRLSRVKFTSILIDESMQS 622
Query: 545 SEPESMVPISSYCKKDTVVVLAGDPMQLGPVIYSREAETYGMGKSYLERL--FECEPYCH 602
+EPE MVP+ K+ ++L GD QLGPV+ ++A G+ +S ERL P+
Sbjct: 623 TEPECMVPVVLGAKQ---LILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVLGIRPF-- 677
Query: 603 GNENYVTKLVRNYRSHPQILHLPSKLFYEEEL---IACKDESISCTAYLNF-LPNKEFPV 658
+L YR HP++ PS FYE L + +D + L+F P E P+
Sbjct: 678 -------RLEVQYRMHPELSQFPSNFFYEGSLQNGVCAEDRRLK----LDFPWPQPERPM 726
Query: 659 LFFGIQGCDEREGSNPSWFNRIEVSKVVEIIQKLTSTGNLSEEDIGVITPYRQQ------ 712
F QG +E GS S+ NR E + V +I + G + E IG+ITPY Q
Sbjct: 727 FFLVTQGQEEIAGSGTSFLNRTEAANVEKITTRFLKAG-IKPEQIGIITPYEGQRAYLVQ 785
Query: 713 VLKLNKALESLYMPDIKVGSVEQFQGQERQVIIVSTVRSTIKHNDFDRKHCLGFLSNPRR 772
++ +L S +I++ SV+ FQG+E+ +II+S VRS + + +GFL++PRR
Sbjct: 786 YMQYQGSLHSRLYQEIEIASVDAFQGREKDIIIMSCVRS-------NERQGIGFLNDPRR 838
Query: 773 FNVAVTRAISLLIIIGNPHIVSKDPYWHQLLWYCSD 808
NVA+TRA +II+GNP +++K W+ LL + D
Sbjct: 839 LNVALTRAKFGIIIVGNPKVLAKQQLWNHLLNFYKD 874
>sp|P42694|HELZ_HUMAN Probable helicase with zinc finger domain OS=Homo sapiens GN=HELZ
PE=1 SV=2
Length = 1942
Score = 195 bits (495), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 192/683 (28%), Positives = 315/683 (46%), Gaps = 109/683 (15%)
Query: 209 LPRYDIPNHIRELIERKQIPDAITDGLTLKNYTSFFKTLLIMEEIQLKEDMRAYDMENVT 268
L RY IP +L + + LT NY S LL +EEI +++ ++++
Sbjct: 429 LIRYQIPLSADQLFTQ----SVLDKSLTKSNYQSRLHDLLYIEEIAQYKEISKFNLKVQL 484
Query: 269 LMRKGLYLSLVVPGLAERRPSLVNGDFIFAKHAYEDTSSA-------------------- 308
+ L+ V G + + G F + EDT +
Sbjct: 485 QILASFMLTGVSGGAKYAQNGQLFGRFKLTETLSEDTLAGRLVMTKVNAVYLLPVPKQKL 544
Query: 309 ----------YQGFIHRVEADEVHLKFASDF--QLNHRDE--NLYNVQFTYNRVNMRRLY 354
Y+ I + + L+ + + +LN R + +QF NR+ + ++
Sbjct: 545 VQTQGTKEKVYEATIEEKTKEYIFLRLSRECCEELNLRPDCDTQVELQFQLNRLPLCEMH 604
Query: 355 QATDAAQELDTEFLFPSESSGIRLIESNTLVPISCN----------LNEEQ---MCSIEK 401
A D + D LFP I +P S N LN +Q + +I
Sbjct: 605 YALDRIK--DNGVLFPD-------ISMTPTIPWSPNRQWDEQLDPRLNAKQKEAVLAITT 655
Query: 402 ILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILGE 461
L ++ PP LI GP GTGKT TL +A+ + +E R+L+C SNSAAD ++ L
Sbjct: 656 PLAIQ-LPPVLIIGPYGTGKTFTLAQAVKHILQQQE-TRILICTHSNSAADLYIKDYL-H 712
Query: 462 KAVEVRENEI--FRLNAPSRPYEDVNADHIRFCFFD--EQIFKCPPLAALVCYRIIISTY 517
VE + R+ +R + V+ ++C F+ P ++ +R+++ T
Sbjct: 713 PYVEAGNPQARPLRVYFRNRWVKTVHPVVHQYCLISSAHSTFQMPQKEDILKHRVVVVTL 772
Query: 518 MSASLIYAEGVDRGHFSHIFLDEAGQASEPESMVPISSYCKKDTVVVLAGDPMQLGPVIY 577
++ + ++ G F+HI LDEA QA E E+++P++ ++T +VLAGD MQL P +Y
Sbjct: 773 NTSQYLCQLDLEPGFFTHILLDEAAQAMECETIMPLA-LATQNTRIVLAGDHMQLSPFVY 831
Query: 578 SREAETYGMGKSYLERLFECEPY---CHGNENYVTKLVRNYRSHPQILHLPSKLFYEEEL 634
S A + S L+RL+E P C L NYRSH I++ S+LFYE +L
Sbjct: 832 SEFARERNLHVSLLDRLYEHYPAEFPCR------ILLCENYRSHEAIINYTSELFYEGKL 885
Query: 635 IACKDESISCTAYLNFLPNKEFPVLFFGIQGCDEREGSNPSWFNRIEVSKVVEIIQKL-- 692
+A + A+ +F +P+ FF +G D +E ++ +++N EV +VVE +++L
Sbjct: 886 MASGKQP----AHKDF-----YPLTFFTARGEDVQEKNSTAFYNNAEVFEVVERVEELRR 936
Query: 693 ---TSTGNLSEEDIGVITPYRQQVLKLNKALESLYMPDIKVGSVEQFQGQERQVIIVSTV 749
+ G L + IGV+TPY QV ++ L + D+ V V QG++ +V+ +STV
Sbjct: 937 KWPVAWGKLDDGSIGVVTPYADQVFRIRAELRKKRLSDVNVERVLNVQGKQFRVLFLSTV 996
Query: 750 RS--TIKHND--FDRKHCL----------GFLSNPRRFNVAVTRAISLLIIIGNP----H 791
R+ T KH +K L GFLSN + N A+TRA SL+ ++G+P
Sbjct: 997 RTRHTCKHKQTPIKKKEQLLEDSTEDLDYGFLSNYKLLNTAITRAQSLVAVVGDPIALCS 1056
Query: 792 IVSKDPYWHQLLWYCSDNNSYQG 814
I +W + + C +N+S G
Sbjct: 1057 IGRCRKFWERFIALCHENSSLHG 1079
>sp|Q9EPU0|RENT1_MOUSE Regulator of nonsense transcripts 1 OS=Mus musculus GN=Upf1 PE=1
SV=2
Length = 1124
Score = 194 bits (493), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 153/457 (33%), Positives = 218/457 (47%), Gaps = 76/457 (16%)
Query: 390 NLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNS 449
+LN Q+ +++ +L P LI GPPGTGKT+T + L A + + +LVCAPSN
Sbjct: 476 DLNHSQVYAVKTVLQ---RPLSLIQGPPGTGKTVTSATIVYHL-ARQGNGPVLVCAPSNI 531
Query: 450 AADHLLEKI--LGEKAVEVRENEIFRLNAPSRPYEDVNADHIRFCFFDEQIF---KCPPL 504
A D L EKI G K V RL A SR D + F QI P L
Sbjct: 532 AVDQLTEKIHQTGLKVV--------RLCAKSREAID---SPVSFLALHNQIRNMDSMPEL 580
Query: 505 AALVC---------------YRIIIST-----YMSASLIYAEGVDRG-------HFSHIF 537
L YR + T M+A +I V G F I
Sbjct: 581 QKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSIL 640
Query: 538 LDEAGQASEPESMVPISSYCKKDTVVVLAGDPMQLGPVIYSREAETYGMGKSYLERL--F 595
+DE+ QA+EPE MVP+ K+ ++L GD QLGPV+ ++A G+ +S ERL
Sbjct: 641 IDESTQATEPECMVPVVLGAKQ---LILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL 697
Query: 596 ECEPYCHGNENYVTKLVRNYRSHPQILHLPSKLFYEEELIACKDESISCTAYLNF-LPNK 654
P +L YR HP + PS +FYE L + +F P
Sbjct: 698 GIRP---------IRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQP 748
Query: 655 EFPVLFFGIQGCDEREGSNPSWFNRIEVSKVVEIIQKLTSTGNLSEEDIGVITPYRQQ-- 712
+ P+ F+ QG +E S S+ NR E + V +I KL G ++ IG+ITPY Q
Sbjct: 749 DKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQ-IGIITPYEGQRS 807
Query: 713 ----VLKLNKALESLYMPDIKVGSVEQFQGQERQVIIVSTVRSTIKHNDFDRKHCLGFLS 768
++ + +L + ++++ SV+ FQG+E+ II+S VR+ + +GFL+
Sbjct: 808 YLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRA-------NEHQGIGFLN 860
Query: 769 NPRRFNVAVTRAISLLIIIGNPHIVSKDPYWHQLLWY 805
+PRR NVA+TRA +II+GNP +SK P W+ LL Y
Sbjct: 861 DPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLSY 897
>sp|Q92900|RENT1_HUMAN Regulator of nonsense transcripts 1 OS=Homo sapiens GN=UPF1 PE=1
SV=2
Length = 1129
Score = 194 bits (492), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 153/457 (33%), Positives = 218/457 (47%), Gaps = 76/457 (16%)
Query: 390 NLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNS 449
+LN Q+ +++ +L P LI GPPGTGKT+T + L A + + +LVCAPSN
Sbjct: 481 DLNHSQVYAVKTVLQ---RPLSLIQGPPGTGKTVTSATIVYHL-ARQGNGPVLVCAPSNI 536
Query: 450 AADHLLEKI--LGEKAVEVRENEIFRLNAPSRPYEDVNADHIRFCFFDEQIF---KCPPL 504
A D L EKI G K V RL A SR D + F QI P L
Sbjct: 537 AVDQLTEKIHQTGLKVV--------RLCAKSREAID---SPVSFLALHNQIRNMDSMPEL 585
Query: 505 AALVC---------------YRIIIST-----YMSASLIYAEGVDRG-------HFSHIF 537
L YR + T M+A +I V G F I
Sbjct: 586 QKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSIL 645
Query: 538 LDEAGQASEPESMVPISSYCKKDTVVVLAGDPMQLGPVIYSREAETYGMGKSYLERL--F 595
+DE+ QA+EPE MVP+ K+ ++L GD QLGPV+ ++A G+ +S ERL
Sbjct: 646 IDESTQATEPECMVPVVLGAKQ---LILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL 702
Query: 596 ECEPYCHGNENYVTKLVRNYRSHPQILHLPSKLFYEEELIACKDESISCTAYLNF-LPNK 654
P +L YR HP + PS +FYE L + +F P
Sbjct: 703 GIRP---------IRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQP 753
Query: 655 EFPVLFFGIQGCDEREGSNPSWFNRIEVSKVVEIIQKLTSTGNLSEEDIGVITPYRQQ-- 712
+ P+ F+ QG +E S S+ NR E + V +I KL G ++ IG+ITPY Q
Sbjct: 754 DKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQ-IGIITPYEGQRS 812
Query: 713 ----VLKLNKALESLYMPDIKVGSVEQFQGQERQVIIVSTVRSTIKHNDFDRKHCLGFLS 768
++ + +L + ++++ SV+ FQG+E+ II+S VR+ + +GFL+
Sbjct: 813 YLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRA-------NEHQGIGFLN 865
Query: 769 NPRRFNVAVTRAISLLIIIGNPHIVSKDPYWHQLLWY 805
+PRR NVA+TRA +II+GNP +SK P W+ LL Y
Sbjct: 866 DPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNY 902
>sp|Q6DFV5|HELZ_MOUSE Probable helicase with zinc finger domain OS=Mus musculus GN=Helz
PE=1 SV=2
Length = 1964
Score = 193 bits (491), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 193/683 (28%), Positives = 315/683 (46%), Gaps = 109/683 (15%)
Query: 209 LPRYDIPNHIRELIERKQIPDAITDGLTLKNYTSFFKTLLIMEEIQLKEDMRAYDMENVT 268
L RY IP +L + + LT NY + LL +EEI +++ ++++
Sbjct: 429 LIRYQIPLSADQLFTQ----SVLDKSLTKTNYQARLHDLLYIEEIAQYKEVSRFNLKVQL 484
Query: 269 LMRKGLYLSLVVPGLAERRPSLVNGDFIFAKHAYEDTSSA-------------------- 308
+ L+ V G + + G F + EDT +
Sbjct: 485 QILASFMLTGVSGGAKYAQNGQLFGRFKLTETLSEDTLAGRLVMTRVNAVYLLPVPKEKL 544
Query: 309 ----------YQGFIHRVEADEVHLKFASDF--QLNHRDENLYNV--QFTYNRVNMRRLY 354
Y+ I D V L+ + + +L+ R + V QF NR+ + ++
Sbjct: 545 VQSQGTKEKVYEATIEEKTKDYVFLRISRECCEELSLRPDCDIQVELQFQLNRLPLCEMH 604
Query: 355 QATDAAQELDTEFLFPSESSGIRLIESNTLVPISCN----------LNEEQ---MCSIEK 401
A D + D LFP I +P S N LN +Q + +I
Sbjct: 605 YALDRIK--DNAVLFPD-------ISMTPTIPWSPNRQWDEQLDPRLNAKQKEAVLAITT 655
Query: 402 ILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILGE 461
L ++ PP LI GP GTGKT TL +A + +E R+L+C SNSAAD ++ L
Sbjct: 656 PLSIQ-LPPVLIIGPYGTGKTFTLAQAAKHILQQQE-TRILICTHSNSAADLYIKDYL-H 712
Query: 462 KAVEVRENEI--FRLNAPSRPYEDVNADHIRFCFFD--EQIFKCPPLAALVCYRIIISTY 517
VE + R+ +R + V+ ++C + F+ P ++ +R+++ T
Sbjct: 713 PYVEAGNPQARPLRVYFRNRWVKTVHPVVHQYCLISSTQSTFQMPQKEDILKHRVVVVTL 772
Query: 518 MSASLIYAEGVDRGHFSHIFLDEAGQASEPESMVPISSYCKKDTVVVLAGDPMQLGPVIY 577
++ + ++ G F+H+ LDEA QA E E+++P++ K+T +VLAGD MQL P +Y
Sbjct: 773 STSQYLCQLDLEPGFFTHVLLDEAAQAMECETIMPLA-LATKNTRIVLAGDHMQLSPFVY 831
Query: 578 SREAETYGMGKSYLERLFECEPY---CHGNENYVTKLVRNYRSHPQILHLPSKLFYEEEL 634
S A + S L+RL+E P C L NYRSH I++ S+LFYE +L
Sbjct: 832 SEFARERNLHVSLLDRLYEHYPAEFPCR------ILLCENYRSHEAIINYTSELFYEGKL 885
Query: 635 IACKDESISCTAYLNFLPNKEFPVLFFGIQGCDEREGSNPSWFNRIEVSKVVEIIQKL-- 692
+A + A+ +F +P+ FF +G D +E ++ +++N EV +VVE +++L
Sbjct: 886 MASGKQP----AHKDF-----YPLTFFTARGEDVQEKNSTAFYNNAEVFEVVERVEELRR 936
Query: 693 ---TSTGNLSEEDIGVITPYRQQVLKLNKALESLYMPDIKVGSVEQFQGQERQVIIVSTV 749
+ G L + IGV+TPY QV ++ L + D+ V V QG++ +V+ +STV
Sbjct: 937 KWPVAWGKLDDGSIGVVTPYADQVFRIRAELRKKRLSDVNVERVLNVQGKQFRVLFLSTV 996
Query: 750 RS--TIKHND--FDRKHCL----------GFLSNPRRFNVAVTRAISLLIIIGNP----H 791
R+ T KH +K L GFLSN + N A+TRA SL+ ++G+P
Sbjct: 997 RTRHTCKHKQTPIKKKEQLLEDSTEDLDYGFLSNYKLLNTAITRAQSLVAVVGDPVALCS 1056
Query: 792 IVSKDPYWHQLLWYCSDNNSYQG 814
I +W + + C +N+S G
Sbjct: 1057 IGRCRKFWERFIALCHENHSLHG 1079
>sp|P30771|NAM7_YEAST ATP-dependent helicase NAM7 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=NAM7 PE=1 SV=1
Length = 971
Score = 189 bits (481), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 150/461 (32%), Positives = 215/461 (46%), Gaps = 80/461 (17%)
Query: 385 VPISCNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVC 444
+P LN Q ++ +L P LI GPPGTGKT+T + L +D R+LVC
Sbjct: 403 IPNFAQLNSSQSNAVSHVLQ---RPLSLIQGPPGTGKTVTSATIVYHLSKIHKD-RILVC 458
Query: 445 APSNSAADHLLEKI--LGEKAVEVRENEIFRLNAPSRPYEDVNADHIRFCFFD------- 495
APSN A DHL K+ LG K V RL A SR EDV + +
Sbjct: 459 APSNVAVDHLAAKLRDLGLKVV--------RLTAKSR--EDVESSVSNLALHNLVGRGAK 508
Query: 496 ---EQIFKCP----PLAALVCYRII-------ISTYMSASLIYAEGVDRG------HFSH 535
+ + K L+A R + A ++ V G F
Sbjct: 509 GELKNLLKLKDEVGELSASDTKRFVKLVRKTEAEILNKADVVCCTCVGAGDKRLDTKFRT 568
Query: 536 IFLDEAGQASEPESMVPISSYCKKDTVVVLAGDPMQLGPVIYSREAETYGMGKSYLERLF 595
+ +DE+ QASEPE ++PI K+ V+L GD QLGPVI R+A G+ +S ERL
Sbjct: 569 VLIDESTQASEPECLIPIVKGAKQ---VILVGDHQQLGPVILERKAADAGLKQSLFERLI 625
Query: 596 ECEPYCHGNENYVTKLVRNYRSHPQILHLPSKLFYEEELIACKDESISCTAYLNFLPNKE 655
+ +L YR +P + PS +FYE L T +PN +
Sbjct: 626 SLG-------HVPIRLEVQYRMNPYLSEFPSNMFYEGSL------QNGVTIEQRTVPNSK 672
Query: 656 FP-------VLFFGIQGCDEREGSNPSWFNRIEVSKVVEIIQKLTSTGNLSEEDIGVITP 708
FP ++F+ G +E + S+ NRIE II KL G + E IGVITP
Sbjct: 673 FPWPIRGIPMMFWANYGREEISANGTSFLNRIEAMNCERIITKLFRDG-VKPEQIGVITP 731
Query: 709 YRQQ------VLKLNKALESLYMPDIKVGSVEQFQGQERQVIIVSTVRSTIKHNDFDRKH 762
Y Q +++N +L+ ++V SV+ FQG+E+ II+S VR+ + +
Sbjct: 732 YEGQRAYILQYMQMNGSLDKDLYIKVEVASVDAFQGREKDYIILSCVRA-------NEQQ 784
Query: 763 CLGFLSNPRRFNVAVTRAISLLIIIGNPHIVSKDPYWHQLL 803
+GFL +PRR NV +TRA L+I+GNP ++++ W+ LL
Sbjct: 785 AIGFLRDPRRLNVGLTRAKYGLVILGNPRSLARNTLWNHLL 825
>sp|Q54I89|RENT1_DICDI Regulator of nonsense transcripts 1 OS=Dictyostelium discoideum
GN=upf1 PE=3 SV=1
Length = 1331
Score = 188 bits (477), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 144/458 (31%), Positives = 220/458 (48%), Gaps = 67/458 (14%)
Query: 391 LNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYA-TREDARLLVCAPSNS 449
LNE Q+ ++ K+L AP LI GPPGTGKT+ I L + + ++LVC PSN
Sbjct: 537 LNESQISAVNKVLT---APLSLIQGPPGTGKTVISSFIIHHLVKYVKGNDKVLVCTPSNV 593
Query: 450 AADHLLEKI--LGEKAV---------------------------EVRENEIFRLNAPSRP 480
A D L K+ +G K V ++ + E+ +L
Sbjct: 594 AIDQLTGKLHEIGLKVVRLSSKLREEVASPVEHLTLHKQVYKLDQMGDGELGKLRKLKEA 653
Query: 481 YEDV-NADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYAEGVDRGHFSHIFLD 539
+ + N D R+ + + +A L +I +T + A + + F HI +D
Sbjct: 654 FGSLSNEDEKRYIYLRRMM----EMAILRKADVICATCVGAG---DPRLSQFRFPHILID 706
Query: 540 EAGQASEPESMVPISSYCKKDTVVVLAGDPMQLGPVIYSREAETYGMGKSYLERLFECEP 599
E+ QASEPE ++P+ K+ V+L GD QLGPV+ ++ G+ +S ERL
Sbjct: 707 ESTQASEPECLIPLMMGAKQ---VILVGDHRQLGPVLLCKKVVDAGLSQSLFERLISLG- 762
Query: 600 YCHGNENYVTKLVRNYRSHPQILHLPSKLFYEEELIACKDESISCTAYLNFLPNKEFPVL 659
++ +L YR HP + PS YE +L++ + + P + P+
Sbjct: 763 ------HHPERLTIQYRMHPSLTEFPSNTSYEGQLVSELSHTDRDSQSKFPWPQPKDPMF 816
Query: 660 FFGIQGCDEREGSNPSWFNRIEVSKVVEIIQKLTSTGNLSEEDIGVITPYRQQVLKLNKA 719
FF G +E S S+ N E S +I+ K G+L + IG+ITPY Q +
Sbjct: 817 FFNCTGSEEISSSGTSFINTTEASICEKIVTKFLELGSLPGQ-IGIITPYEGQRAYITSH 875
Query: 720 LES-------LYMPDIKVGSVEQFQGQERQVIIVSTVRSTIKHNDFDRKHCLGFLSNPRR 772
++ LY I+V SV+ FQG+E+ II+S VRS ND+ +GFL +PRR
Sbjct: 876 MQKSGKLNLELYK-SIEVASVDSFQGREKDYIILSCVRS----NDY---QGIGFLQDPRR 927
Query: 773 FNVAVTRAISLLIIIGNPHIVSKDPYWHQLLWYCSDNN 810
NVA+TRA LII+GN ++SKDP W+ L+ + + N
Sbjct: 928 LNVALTRARFGLIILGNAKVLSKDPLWNSLISHFKNKN 965
>sp|Q09820|RENT1_SCHPO ATP-dependent helicase upf1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=upf1 PE=3 SV=2
Length = 925
Score = 186 bits (471), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 142/466 (30%), Positives = 223/466 (47%), Gaps = 60/466 (12%)
Query: 379 IESNTLVPISCNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATRED 438
+ S+ VP LN Q ++ +L P LI GPPGTGKT+T + L +
Sbjct: 381 LPSDLSVPNLPKLNASQSEAVRAVLS---KPLSLIQGPPGTGKTVTSASVVYHLATMQSR 437
Query: 439 AR-----LLVCAPSNSAADHLLEKI--LGEKAVEV----REN--------------EIFR 473
R +LVCAPSN A D L EKI G + V V RE+ + ++
Sbjct: 438 KRKSHSPVLVCAPSNVAVDQLAEKIHRTGLRVVRVAAKSREDIESSVSFLSLHEQIKNYK 497
Query: 474 LNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAA----LVCYRIIISTYMSASLIYAEGVD 529
N + + +++ DE+ + AA L +I T + A +
Sbjct: 498 FNPELQRLLKLRSENNELSIQDEKKLRILVAAAEKELLRAAHVICCTCVGAG---DRRIS 554
Query: 530 RGHFSHIFLDEAGQASEPESMVPISSYCKKDTVVVLAGDPMQLGPVIYSREAETYGMGKS 589
+ F + +DEA QASEPE M+P+ K+ VVL GD QLGPV+ +++ + +S
Sbjct: 555 KYKFRSVLIDEATQASEPECMIPLVLGAKQ---VVLVGDHQQLGPVVMNKKVALASLSQS 611
Query: 590 YLERLFECEPYCHGNENYVTKLVRNYRSHPQILHLPSKLFYEEELIACKDESISCTAYLN 649
ERL GN + +LV YR HP + PS FYE L S +++
Sbjct: 612 LFERLI-----ILGNSPF--RLVVQYRMHPCLSEFPSNTFYEGTLQNGVTTSERIARHVD 664
Query: 650 F-LPNKEFPVLFFGIQGCDEREGSNPSWFNRIEVSKVVEIIQKLTSTGNLSEEDIGVITP 708
F + P++F+ G +E S S+ NR E S +I+ + N+ E IG++TP
Sbjct: 665 FPWIQPDSPLMFYANFGQEELSASGTSFLNRTEASTCEKIVTTFLRS-NVLPEQIGIVTP 723
Query: 709 YRQQ------VLKLNKALESLYMPDIKVGSVEQFQGQERQVIIVSTVRSTIKHNDFDRKH 762
Y Q ++ N +++ ++V SV+ FQG+E+ II+S VRS+
Sbjct: 724 YDGQRSYIVQYMQNNGSMQKDLYKAVEVASVDAFQGREKDFIILSCVRSS-------EHQ 776
Query: 763 CLGFLSNPRRFNVAVTRAISLLIIIGNPHIVSKDPYWHQLLWYCSD 808
+GF+++PRR NVA+TRA +I++GNP +++K W+ + +C +
Sbjct: 777 GIGFVNDPRRLNVALTRAKYGVIVLGNPKVLAKHALWYHFVLHCKE 822
>sp|Q9FJR0|RENT1_ARATH Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana
GN=UPF1 PE=1 SV=2
Length = 1254
Score = 182 bits (463), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 176/621 (28%), Positives = 280/621 (45%), Gaps = 85/621 (13%)
Query: 240 YTSFFKTLLIMEEIQLKEDMRAYDMENVTL-----MRKGLYLSLVVPGLAERRPSLVNGD 294
Y + F L+ +E K + EN+T+ + K V P E LV GD
Sbjct: 321 YQNVFAPLIKLEADYDKMMKESQSKENLTVRWDIGLNKKRVAYFVFP-KEENELRLVPGD 379
Query: 295 FIFAKHAYEDTSSAYQGFIHRVE---ADEVHLKFASDFQLNHRDENLYNVQFTYNRVNMR 351
+ +++ + ++Q H ++ +EV L+ ++ + + ++V F + +
Sbjct: 380 ELRLRYSGDAVHPSWQSVGHVIKLTAQEEVALELRANQGVPIDVNHGFSVDFVWKSTSFD 439
Query: 352 RLYQATD--AAQELDTEFLFPSESSGIRL---IESNTL-----VPISCNLNEEQMCSIEK 401
R+ A A E + G + + NTL VP LN Q+ +++
Sbjct: 440 RMQGAMKNFAVDETSVSGYIYHQLLGHEVEAQMVRNTLPRRFGVPGLPELNASQVNAVKS 499
Query: 402 ILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKI--L 459
+L P LI GPPGTGKT+T AI+ A + ++LVCAPSN A D L EKI
Sbjct: 500 VLQ---KPISLIQGPPGTGKTVTSA-AIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISAT 555
Query: 460 GEKAVEVRENEIFRLNAPS--------------------RPYEDVNADHIRFCFFDEQIF 499
G K V + +++P + + + DE+ +
Sbjct: 556 GLKVVRLCAKSREAVSSPVEYLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKY 615
Query: 500 KCPPLAA----LVCYRIIISTYMSASLIYAEGVDRGHFSHIFLDEAGQASEPESMVPISS 555
K A +I T + A+ + + F + +DE+ QA+EPE ++P+
Sbjct: 616 KNLKRATEREITQSADVICCTCVGAADLR---LSNFRFRQVLIDESTQATEPECLIPLVL 672
Query: 556 YCKKDTVVVLAGDPMQLGPVIYSREAETYGMGKSYLERL--FECEPYCHGNENYVTKLVR 613
K+ VVL GD QLGPVI ++A G+ +S ERL +P +L
Sbjct: 673 GVKQ---VVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVTLGIKP---------IRLQV 720
Query: 614 NYRSHPQILHLPSKLFYEEELIACKDESISCTAYLNF---LPNKEFPVLFFGIQGCDERE 670
YR HP + PS FYE L T ++F +PN+ P+ F+ G +E
Sbjct: 721 QYRMHPALSEFPSNSFYEGTLQNGVTIIERQTTGIDFPWPVPNR--PMFFYVQLGQEEIS 778
Query: 671 GSNPSWFNRIEVSKVVEIIQKLTSTGNLSEEDIGVITPYRQQ------VLKLNKALESLY 724
S S+ NR E + V +++ +G + + IGVITPY Q + N +L
Sbjct: 779 ASGTSYLNRTEAANVEKLVTAFLKSGVVPSQ-IGVITPYEGQRAYIVNYMARNGSLRQQL 837
Query: 725 MPDIKVGSVEQFQGQERQVIIVSTVRSTIKHNDFDRKHCLGFLSNPRRFNVAVTRAISLL 784
+I+V SV+ FQG+E+ II+S VRS + +GFL++PRR NVA+TRA +
Sbjct: 838 YKEIEVASVDSFQGREKDYIILSCVRS-------NEHQGIGFLNDPRRLNVALTRARYGI 890
Query: 785 IIIGNPHIVSKDPYWHQLLWY 805
+I+GNP ++SK P W+ LL +
Sbjct: 891 VILGNPKVLSKQPLWNGLLTH 911
>sp|O76512|RENT1_CAEEL Regulator of nonsense transcripts 1 OS=Caenorhabditis elegans
GN=smg-2 PE=1 SV=1
Length = 1069
Score = 182 bits (462), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 178/650 (27%), Positives = 280/650 (43%), Gaps = 121/650 (18%)
Query: 239 NYTSFFKTLLIME-EIQLKEDMRAYDMENVTLMRKGLYLSLV----VPGLAERRPSLVNG 293
+Y+ F+ L+ +E E + A +GL S++ +P A+ L G
Sbjct: 273 HYSKVFRPLVAIEAEYDRRVKESASQAVGTVRWEQGLRQSVLAFFHLPQFADGVMKLAKG 332
Query: 294 DFIFAKHAYEDTSSAYQ--GFIHRV---EADEVHLKFASDFQLNHRDEN-LYNVQFTYNR 347
D + KH+ S + G + ++ DEV ++ + + ++ V +N
Sbjct: 333 DELRLKHSQTVDGSEWTKIGSVFKIPDNHGDEVGIEIRGAVDKSVMESRIMFTVDVVWNA 392
Query: 348 VNMRRLYQATDA--------------------AQELDTEFLFPSESSGIRLIESNTLVPI 387
R Y+A A A+E+ +F P S L E
Sbjct: 393 TTFERQYKALAALLNDSKAISPYLYQKLLGHPAEEMMLKFDLPRRLSVAGLPE------- 445
Query: 388 SCNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPS 447
LN QM +++++L P LI GPPGTGKT+ + L + + +LVC+PS
Sbjct: 446 ---LNSSQMQAVKQVLT---RPLSLIQGPPGTGKTVVSATIVYHL-VQKTEGNVLVCSPS 498
Query: 448 NSAADHLLEKI--LGEKAVEVRENEIFRLNAPSRPYEDVNADHIRFC------------- 492
N A DHL EKI G K V RL A SR + + ++
Sbjct: 499 NIAVDHLAEKIHKTGLKVV--------RLCARSREHSETTVPYLTLQHQLKVMGGAELQK 550
Query: 493 ------------FFDE----QIFKCPPLAALVCYRIIISTYMSASLIYAEGVDRGHFSHI 536
F D+ Q+ + L +I T SA+ + + +
Sbjct: 551 LIQLKDEAGELEFKDDLRYMQLKRVKEHELLAAADVICCTCSSAA---DARLSKIRTRTV 607
Query: 537 FLDEAGQASEPESMVPISSYCKKDTVVVLAGDPMQLGPVIYSREAETYGMGKSYLERL-- 594
+DE+ QA+EPE +V I ++ +VL GD QLGPV+ ++A G+ +S ERL
Sbjct: 608 LIDESTQATEPEILVSIMRGVRQ---LVLVGDHCQLGPVVICKKAAIAGLSQSLFERLVL 664
Query: 595 FECEPYCHGNENYVTKLVRNYRSHPQILHLPSKLFYEEEL---IACKDESISCTAYLNFL 651
P+ +L YR HP + PS +FY+ L + D ++ +
Sbjct: 665 LGIRPF---------RLQVQYRMHPVLSEFPSNVFYDGSLQNGVTENDRHMTGVDWHWPK 715
Query: 652 PNKEFPVLFFGIQGCDEREGSNPSWFNRIEVSKVVEIIQKLTSTGNLSEEDIGVITPYRQ 711
PNK P F+ G +E S S+ NR E + V +++ KL G + IGVIT Y
Sbjct: 716 PNK--PAFFWHCSGSEELSASGTSFLNRTEAANVEKLVSKLIKAG-VQPHQIGVITSYEG 772
Query: 712 Q------VLKLNKALESLYMPDIKVGSVEQFQGQERQVIIVSTVRSTIKHNDFDRKHCLG 765
Q + L S ++++ SV+ FQG+E+ IIV+ VRS ND +G
Sbjct: 773 QRSFIVNYMHTQGTLNSKLYENVEIASVDAFQGREKDYIIVTCVRS----NDI---LGIG 825
Query: 766 FLSNPRRFNVAVTRAISLLIIIGNPHIVSKDPYWHQLL-WYCSDNNSYQG 814
FLS+PRR NVA+TRA L+++GN ++++ WH+L+ Y S Y+G
Sbjct: 826 FLSDPRRLNVAITRAKYGLVLVGNAKVLARHDLWHELINHYKSKEMLYEG 875
>sp|Q98TR3|RENT1_TAKRU Putative regulator of nonsense transcripts 1 OS=Takifugu rubripes
GN=rent1 PE=3 SV=1
Length = 1097
Score = 165 bits (418), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 139/452 (30%), Positives = 211/452 (46%), Gaps = 72/452 (15%)
Query: 390 NLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNS 449
+LN Q+ +++ +L P LI GPPGTGKT+T + L + + + +LVCAPSN
Sbjct: 452 DLNHSQVYAVKTVLQ---RPLSLIQGPPGTGKTVTSATIVYHL-SRQGNGPVLVCAPSNI 507
Query: 450 AADHLLEKILGEKAVEVRENEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKC---PPLAA 506
A D L EKI + ++ RL A SR + + F QI P L
Sbjct: 508 AVDQLTEKI------DKTGLKVVRLCAKSR---EAIESPVSFLALHNQISNMDSMPELQK 558
Query: 507 LVC---------------YRIIIST-----YMSASLIYAEGVDRG-------HFSHIFLD 539
L YR + T M+A +I+ V G F I +D
Sbjct: 559 LQQLKDETGELSSADEKRYRALKRTAERELLMNADVIWCTCVRAGDPRLAKMQFRSILID 618
Query: 540 EAGQASEPESMVPISSYCKKDTVVVLAGDPMQLGPVIYSREAETYGMGKSYLERL--FEC 597
E+ QA+EP+ + P+ K+ ++ G+ + ++A G+ +S ERL
Sbjct: 619 ESTQATEPKCIGPVELGAKQ----LILGEITASWSCVMCKKAAKAGLSQSLFERLVVLGI 674
Query: 598 EPYCHGNENYVTKLVRNYRSHPQILHLPSKLFYEEELIACKDESISCTAYLNF-LPNKEF 656
P +L YR HP + PS +FYE L +F P E
Sbjct: 675 RP---------IRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAGDRIKKGFDFQWPQPEK 725
Query: 657 PVLFFGIQGCDEREGSNPSWFNRIEVSKVVEIIQKLTSTGNLSEEDIGVITPYRQQVLKL 716
P+ F+ QG +E S S+ NR E + V +I +L G ++ IG+ITPY Q L
Sbjct: 726 PMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQ-IGIITPYEGQRSYL 784
Query: 717 NKALE---SLY--MPDIKVGSVEQFQGQERQVIIVSTVRSTIKHNDFDRKHCLGFLSNPR 771
+ ++ SL+ + +++ SV+ FQG+E+ II+S VR+ + +GFL++PR
Sbjct: 785 VQYMQFSGSLHTKLYQVEIASVDAFQGREKDFIILSCVRA-------NEHQGIGFLNDPR 837
Query: 772 RFNVAVTRAISLLIIIGNPHIVSKDPYWHQLL 803
R NVA+TRA +II+GNP +SK P W+ LL
Sbjct: 838 RLNVALTRAKYGVIIVGNPKALSKQPLWNNLL 869
>sp|P38935|SMBP2_HUMAN DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGHMBP2 PE=1 SV=3
Length = 993
Score = 164 bits (416), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 184/659 (27%), Positives = 275/659 (41%), Gaps = 142/659 (21%)
Query: 266 NVTLMRKGLYLSLVVP------GLAERRPS--LVNGDFIFAKHAYEDTSSAYQGFIHRVE 317
V+ R GLY L+V G A PS +GD + A + S G + RV
Sbjct: 51 QVSSQRTGLYGRLLVTFEPRRYGSAAALPSNSFTSGDIVGLYDAANEGSQLATGILTRVT 110
Query: 318 ADEVHLKF--ASDFQLNHRDENLYNVQFTYNRVNMRRLYQATDAAQELDT-------EFL 368
V + F + DFQL+ EN Y + N V RRL +A A ++ + E L
Sbjct: 111 QKSVTVAFDESHDFQLSLDRENSYRLLKLANDVTYRRLKKALIALKKYHSGPASSLIEVL 170
Query: 369 F----PSESSGIRLIESNTLVPISCNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMT 424
F PS +S I + L + L+ Q ++ + L +I+GPPGTGKT T
Sbjct: 171 FGRSAPSPASEI-----HPLTFFNTCLDTSQKEAV--LFALSQKELAIIHGPPGTGKTTT 223
Query: 425 LVEAILQLYATREDARLLVCAPSNSAADHLLEKILGEKAVEVRENEIFRLNAPSRPYEDV 484
+VE ILQ A ++ ++L CAPSN A D+L+E++ + + I RL P+R E +
Sbjct: 224 VVEIILQ--AVKQGLKVLCCAPSNIAVDNLVERL------ALCKQRILRLGHPARLLESI 275
Query: 485 NADHIRFCFFD--------------EQIF------------------------------K 500
+ +Q+F +
Sbjct: 276 QQHSLDAVLARSDSAQIVADIRKDIDQVFVKNKKTQDKREKSNFRNEIKLLRKELKEREE 335
Query: 501 CPPLAALVCYRIIISTYMSASLIYAEG----VDRGHFSHIFLDEAGQASEPESMVPISSY 556
L +L ++++T AS A+G + +F + +DE QA E +P+
Sbjct: 336 AAMLESLTSANVVLATNTGAS---ADGPLKLLPESYFDVVVIDECAQALEASCWIPLLKA 392
Query: 557 CKKDTVVVLAGDPMQLGPVIYSREAETYGMGKSYLERLFECEPYCHGNENYVTKLVRN-- 614
K +LAGD QL P S +A G+ S +ERL E Y ++VR
Sbjct: 393 RK----CILAGDHKQLPPTTVSHKAALAGLSLSLMERLAE---------EYGARVVRTLT 439
Query: 615 --YRSHPQILHLPSKLFYEEELIACKDESISCTAYLNFLPN------KEFPVLFFGIQGC 666
YR H I+ S Y +L A S L LP P+L GC
Sbjct: 440 VQYRMHQAIMRWASDTMYLGQLTA---HSSVARHLLRDLPGVAATEETGVPLLLVDTAGC 496
Query: 667 --------DEREGSNPSWFNRIEVSKVVEIIQKLTSTGNLSEEDIGVITPYRQQVLKLNK 718
DE+ NP EV V IQ L G + DI V++PY QV L +
Sbjct: 497 GLFELEEEDEQSKGNPG-----EVRLVSLHIQALVDAG-VPARDIAVVSPYNLQVDLLRQ 550
Query: 719 ALESLYMPDIKVGSVEQFQGQERQVIIVSTVRSTIKHNDFDRKHCLGFLSNPRRFNVAVT 778
+L + P++++ SV+ FQG+E++ +I+S VRS +RK +GFL+ RR NVAVT
Sbjct: 551 SLVHRH-PELEIKSVDGFQGREKEAVILSFVRS-------NRKGEVGFLAEDRRINVAVT 602
Query: 779 RAISLLIIIGNPHIVSKDPYWHQLLWYCSDNNSYQGCALPEREEFADEDPTAAECWNHE 837
RA + +I + V+ + L+ Y + + R F D E ++HE
Sbjct: 603 RARRHVAVICDSRTVNNHAFLKTLVEYFTQHGEV-------RTAFEYLDDIVPENYSHE 654
>sp|Q60560|SMBP2_MESAU DNA-binding protein SMUBP-2 OS=Mesocricetus auratus GN=IGHMBP2 PE=1
SV=1
Length = 989
Score = 158 bits (399), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 171/613 (27%), Positives = 261/613 (42%), Gaps = 105/613 (17%)
Query: 289 SLVNGDFIFAKHAYEDTSSAYQGFIHRVEADEVHLKF--ASDFQLNHRDENLYNVQFTYN 346
S +GD + A E + A G + R+ V + F + DFQLN EN Y + N
Sbjct: 82 SFTSGDIVGLYDANESSQLAT-GVLTRITQKSVTVAFDESHDFQLNLDRENTYRLLKLAN 140
Query: 347 RVNMRRLYQA--------TDAAQELDTEFLFPSESSGIRLIESNTLVPISCNLNEEQMCS 398
V +RL +A + A L L S S I T + + ++++ S
Sbjct: 141 DVTYKRLKKALMTLKKYHSGPASSLIDVLLGGSSPSPTTEIPPFTFYNTALDPSQKEAVS 200
Query: 399 IEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKI 458
L +I+GPPGTGKT T+VE ILQ A ++ ++L CAPSN A D+L+E++
Sbjct: 201 ----FALAQKEVAIIHGPPGTGKTTTVVEIILQ--AVKQGLKILCCAPSNVAVDNLVERL 254
Query: 459 LGEKAVEVRENEIFRLNAPSRPYEDV-------------NADHIRFCFFD-EQIF----- 499
+ + I RL P+R E NA + D +Q+F
Sbjct: 255 ------ALCKKRILRLGHPARLLESAQQHSLDAVLARSDNAQIVADIRKDIDQVFGKNKK 308
Query: 500 -------------------------KCPPLAALVCYRIIISTYMSASLIYAEG----VDR 530
+ + +L ++++T AS ++G +
Sbjct: 309 TQDKREKSNFRNEIKLLRKELKEREEAAIVQSLTAADVVLATNTGAS---SDGPLKLLPE 365
Query: 531 GHFSHIFLDEAGQASEPESMVPISSYCKKDTVVVLAGDPMQLGPVIYSREAETYGMGKSY 590
HF + +DE QA E +P+ K +LAGD QL P S +A G+ +S
Sbjct: 366 NHFDVVVVDECAQALEASCWIPLLKAPK----CILAGDHRQLPPTTISHKAALAGLSRSL 421
Query: 591 LERLFECEPYCHGNENYVTKLVRNYRSHPQILHLPSKLFYEEELIACKDESISCTAYLNF 650
+ERL E HG V L YR H I S+ Y +L A + L
Sbjct: 422 MERLVEK----HG-AGAVRMLTVQYRMHQAITRWASEAMYHGQLTAHPSVAGHLLKDLPG 476
Query: 651 LPNKE---FPVLFFGIQGC---DEREGSNPSWFNRIEVSKVVEIIQKLTSTGNLSEEDIG 704
+ + E P+L GC + E + S N EV V IQ L G + DI
Sbjct: 477 VADTEETSVPLLLIDTAGCGLLELDEEDSQSKGNPGEVRLVTLHIQALVDAG-VHAGDIA 535
Query: 705 VITPYRQQVLKLNKALESLYMPDIKVGSVEQFQGQERQVIIVSTVRSTIKHNDFDRKHCL 764
VI PY QV L ++L + + P++++ SV+ FQG+E++ +I++ VRS +RK +
Sbjct: 536 VIAPYNLQVDLLRQSLSNKH-PELEIKSVDGFQGREKEAVILTFVRS-------NRKGEV 587
Query: 765 GFLSNPRRFNVAVTRAISLLIIIGNPHIVSKDPYWHQLLWYCSDNNSYQGCALPEREEFA 824
GFL+ RR NVAVTRA + +I + V+ + L+ Y +++ R F
Sbjct: 588 GFLAEDRRINVAVTRARRHVAVICDSRTVNNHAFLKTLVDYFTEHGEV-------RTAFE 640
Query: 825 DEDPTAAECWNHE 837
D E + HE
Sbjct: 641 YLDDIVPENYTHE 653
>sp|P34243|HCS1_YEAST DNA polymerase alpha-associated DNA helicase A OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HCS1 PE=1
SV=1
Length = 683
Score = 157 bits (398), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 144/536 (26%), Positives = 258/536 (48%), Gaps = 92/536 (17%)
Query: 344 TYNRV--NMRRLYQATDAAQELDTEFL-----FPSESSGIRLIESNTLVPISCNLNEEQM 396
TYNR+ MR+L + + Q+ ++L F ++ + I+S ++ NLN+ Q
Sbjct: 158 TYNRMESTMRKLSEISSPIQDKIIQYLVNERPFIPNTNSFQNIKS----FLNPNLNDSQK 213
Query: 397 CSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLE 456
+I + +I+GPPGTGKT TL+E I QL + R+L+C PSN + D +LE
Sbjct: 214 TAINFAIN---NDLTIIHGPPGTGKTFTLIELIQQLLIKNPEERILICGPSNISVDTILE 270
Query: 457 K-----------------------------ILGEKAVEVRE-----NEIFRLNAPSRPYE 482
+ IL +K V++ +++ + N + Y+
Sbjct: 271 RLTPLVPNNLLLRIGHPARLLDSNKRHSLDILSKKNTIVKDISQEIDKLIQENKKLKNYK 330
Query: 483 DV--NADHIRFCFFDEQIFKCPPLAALVCY-RIIISTYMSASL-----IYAEGVDRGHFS 534
N + I+ D + + + L+ RI+++T +S +Y + + F
Sbjct: 331 QRKENWNEIKLLRKDLKKREFKTIKDLIIQSRIVVTTLHGSSSRELCSLYRDDPNFQLFD 390
Query: 535 HIFLDEAGQASEPESMVPISSYCKKDTVVVLAGDPMQLGPVIYSREAET--YGMGKSYLE 592
+ +DE QA EP+ +P+ ++ + +VLAGD QL P I + + + + + + +
Sbjct: 391 TLIIDEVSQAMEPQCWIPLIAHQNQFHKLVLAGDNKQLPPTIKTEDDKNVIHNLETTLFD 450
Query: 593 RLFECEPYCHGNENYVTKLVRNYRSHPQILHLPSKLFYEEELIACKDESISCTAYLNFLP 652
R+ + P + V L YR + +I+ PS Y +L+A D +++ ++ LP
Sbjct: 451 RIIKIFP----KRDMVKFLNVQYRMNQKIMEFPSHSMYNGKLLA--DATVANRLLID-LP 503
Query: 653 -----------NKEFPVLFFGIQGCDEREGSNP-----SWFNRIEVSKVVEIIQKLTSTG 696
+ + P++++ QG + +E ++ S +N E++ V E I+ L S
Sbjct: 504 TVDATPSEDDDDTKIPLIWYDTQGDEFQETADEATILGSKYNEGEIAIVKEHIENLRSF- 562
Query: 697 NLSEEDIGVITPYRQQVLKLNKAL-ESLYMPDIKVGSVEQFQGQERQVIIVSTVRSTIKH 755
N+ E IGVI+PY QV L K + + L + DI++ +V+ FQG+E+ VII+S VRS
Sbjct: 563 NVPENSIGVISPYNAQVSHLKKLIHDELKLTDIEISTVDGFQGREKDVIILSLVRS---- 618
Query: 756 NDFDRKHCLGFLSNPRRFNVAVTRAISLLIIIGNPHIVSK--DPYWHQLLWYCSDN 809
+ K +GFL RR NVA+TR L+++GN ++ + + Y +C +N
Sbjct: 619 ---NEKFEVGFLKEERRLNVAMTRPRRQLVVVGNIEVLQRCGNKYLKSWSEWCEEN 671
>sp|Q9BYK8|HELZ2_HUMAN Helicase with zinc finger domain 2 OS=Homo sapiens GN=HELZ2 PE=1
SV=6
Length = 2649
Score = 155 bits (393), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 137/469 (29%), Positives = 220/469 (46%), Gaps = 37/469 (7%)
Query: 338 LYNVQFTYNRVNMRRLYQATDAAQELDTEFLFPSESSGIRLIESNTLVPISCNLNEEQMC 397
+ VQF + + R +QA D L E L + L ++ P+ N +Q
Sbjct: 466 VLEVQFQIDPMTFRLWHQAVDT---LPEEQLVVPDLPTCALPRPWSVPPLRRG-NRKQEL 521
Query: 398 SIEKILGL-----KGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAAD 452
++ I G + PP LIYGP GTGKT TL A L++ R + ++L+C +NSAAD
Sbjct: 522 AVALIAGWGPGDGRRVPPLLIYGPFGTGKTYTLAMASLEVI-RRPETKVLICTHTNSAAD 580
Query: 453 -HLLEKILGEKAVEVRENEIFRLNAPSRPYEDVNADHIRFCFF--DEQIFKCPPLAALVC 509
++ E + E R+ RP + +++C D Q F+ P A L
Sbjct: 581 IYIREYFHSHVSGGHPEATPLRVMYTDRPLSQTDPVTLQYCCLTDDRQAFRPPTRAELAR 640
Query: 510 YRIIISTYMSASLIYAEGVDRGHFSHIFLDEAGQASEPESMVPISSYCKKDTVVVLAGDP 569
+R++++T A + V G FSHI +DEA Q E E++ P+ +Y T +VLAGD
Sbjct: 641 HRVVVTTTSQARELR---VPVGFFSHILIDEAAQMLECEALTPL-AYASHGTRLVLAGDH 696
Query: 570 MQLGPVIYSREAETYGMGKSYLERLFECEPYCHGNENYVTKLV--RNYRSHPQILHLPSK 627
MQ+ P ++S A + L RLF C ++LV NYR I+ S+
Sbjct: 697 MQVTPRLFS-VARARAAEHTLLHRLFLCYQQETHEVARQSRLVFHENYRCTDAIVSFISR 755
Query: 628 LFYEEELIACKDESISCTAYLNFLPNKEFPVLFFGIQGCDEREGSNPSWFNRIEVSKVVE 687
FY K I + P + +P++F + G +R+ S SW N E+++VVE
Sbjct: 756 HFY-----VAKGNPIHARGKVPPHP-RHYPLMFCHVAGSPDRDMSMASWLNLAEIAQVVE 809
Query: 688 IIQKLTST-----GNLSEEDIGVITPYRQQVLKLNKALESLYMPDIKVGSVEQFQGQERQ 742
+Q+ +T G + I V++ + QV L + L + + VGS E G++ +
Sbjct: 810 KVQEAYNTWPSCWGGREQRCICVVS-HGAQVSALRQELRRRDLGQVSVGSFEILPGRQFR 868
Query: 743 VIIVSTVRSTIKHNDFDRKHCLG--FLSNPRRFNVAVTRAISLLIIIGN 789
V+++STV + L F ++ R N +TRA S L+++G+
Sbjct: 869 VVVLSTVHTC---QSLLSPGALAPEFFTDARVLNTVLTRAQSQLVVVGD 914
Score = 137 bits (345), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 134/502 (26%), Positives = 217/502 (43%), Gaps = 101/502 (20%)
Query: 390 NLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYAT-----------RED 438
LN Q ++ + L P +I GPPGTGKT+ + + + + R +
Sbjct: 2152 KLNPSQNVAVREALE---KPFTVIQGPPGTGKTIVGLHIVFWFHKSNQEQVQPGGPPRGE 2208
Query: 439 ARL-----LVCAPSNSAADHLLEKILGEKAVEVRENEIFRLNAPSR-------------- 479
RL L C PSN + D L +L + +E++ ++ A +
Sbjct: 2209 KRLGGPCILYCGPSNKSVDVLAGLLL--RRMELKPLRVYSEQAEASEFPVPRVGSRKLLR 2266
Query: 480 --PYEDVNADHIRFCFFDEQIFKCP-PLAA-------------------LVCYR------ 511
P E +R +I + P P ++ LV Y+
Sbjct: 2267 KSPREGRPNQSLRSITLHHRIRQAPNPYSSEIKAFDTRLQRGELFSREDLVWYKKVLWEA 2326
Query: 512 ---------IIISTYMSASLIYAEGVDRGHFSHIFLDEAGQASEPESMVPISSYCKKDTV 562
+I+ T A+ + +D I +DEAG A+EPE+++P+ + + + V
Sbjct: 2327 RKFELDRHEVILCTCSCAASASLKILD---VRQILVDEAGMATEPETLIPLVQFPQAEKV 2383
Query: 563 VVLAGDPMQLGPVIYSREAETYGMGKSYLERLFECEPYCHGNENYVTKLVRNYRSHPQIL 622
V+L GD QL PV+ + + G+ +S ER E L YR H I
Sbjct: 2384 VLL-GDHKQLRPVVKNERLQNLGLDRSLFERYHE----------DAHMLDTQYRMHEGIC 2432
Query: 623 HLPSKLFYEEELIACKDESISCTAYLNFLPNKEFPVLFFGIQGCDER------EGSNPSW 676
PS FY+ +L + + L + PV+F +QG + EG+ S
Sbjct: 2433 AFPSVAFYKSKLKTWQGLRRP-PSVLGHAGKESCPVIFGHVQGHERSLLVSTDEGNENSK 2491
Query: 677 FNRIEVSKVVEIIQKLTSTGNLSEEDIGVITPYRQQVLKLNKALESLYMPDIKVGSVEQF 736
N EV++VV I ++LT + +DI V+TPY Q +++KAL + + V S+ +
Sbjct: 2492 ANLEEVAEVVRITKQLTLGRTVEPQDIAVLTPYNAQASEISKALRREGIAGVAVSSITKS 2551
Query: 737 QGQERQVIIVSTVRSTIKHNDFDR-------KHCLGFLSNPRRFNVAVTRAISLLIIIGN 789
QG E + ++VSTVR+ K +D D+ K LGF+ +P + NVAVTRA L +IG+
Sbjct: 2552 QGSEWRYVLVSTVRTCAK-SDLDQRPTKSWLKKFLGFVVDPNQVNVAVTRAQEGLCLIGD 2610
Query: 790 PHIVSKDPYWHQLLWYCSDNNS 811
++ P W LL +C +
Sbjct: 2611 HLLLRCCPLWRSLLDFCEAQQT 2632
>sp|P40694|SMBP2_MOUSE DNA-binding protein SMUBP-2 OS=Mus musculus GN=Ighmbp2 PE=1 SV=1
Length = 993
Score = 155 bits (392), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 174/644 (27%), Positives = 272/644 (42%), Gaps = 113/644 (17%)
Query: 266 NVTLMRKGLYLSLVV--------PGLAERRPSLVNGDFIFAKHAYEDTSSAYQGFIHRVE 317
V+ R GLY +V P + S +GD + E++ A G + R+
Sbjct: 51 QVSSQRTGLYGQRLVTFEPRKFGPAVVLPSNSFTSGDIVGLYDTNENSQLAT-GVLTRIT 109
Query: 318 ADEVHLKF--ASDFQLNHRDENLYNVQFTYNRVNMRRLYQA--------TDAAQELDTEF 367
V + F + D QLN EN Y + N V +RL +A + A L
Sbjct: 110 QKSVTVAFDESHDLQLNLDRENTYRLLKLANDVTYKRLKKALMTLKKYHSGPASSLIDIL 169
Query: 368 LFPSESSGIRLIESNTLVPISCNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVE 427
L S S I + + +L++++ S L +I+GPPGTGKT T+VE
Sbjct: 170 LGSSTPSPAMEIPPLSFYNTTLDLSQKEAVS----FALAQKELAIIHGPPGTGKTTTVVE 225
Query: 428 AILQLYATREDARLLVCAPSNSAADHLLEKILGEKAVEVRENEIFRLNAPSRPYEDV--- 484
ILQ A ++ ++L CAPSN A D+L+E++ + + I RL P+R E V
Sbjct: 226 IILQ--AVKQGLKVLCCAPSNIAVDNLVERL------ALCKKRILRLGHPARLLESVQHH 277
Query: 485 ----------NADHIRFCFFD-EQIF------------------------------KCPP 503
NA + D +Q+F +
Sbjct: 278 SLDAVLARSDNAQIVADIRRDIDQVFGKNKKTQDKREKGNFRSEIKLLRKELKEREEAAI 337
Query: 504 LAALVCYRIIISTYMSASLIYAEG----VDRGHFSHIFLDEAGQASEPESMVPISSYCKK 559
+ +L ++++T AS ++G + +F + +DE QA E +P+ K
Sbjct: 338 VQSLTAADVVLATNTGAS---SDGPLKLLPEDYFDVVVVDECAQALEASCWIPLLKAPK- 393
Query: 560 DTVVVLAGDPMQLGPVIYSREAETYGMGKSYLERLFECEPYCHGNENYVTKLVRNYRSHP 619
+LAGD QL P S A G+ +S +ERL E HG V L YR H
Sbjct: 394 ---CILAGDHRQLPPTTVSHRAALAGLSRSLMERLAEK----HG-AGVVRMLTVQYRMHQ 445
Query: 620 QILHLPSKLFYEEELIACKDESISCTAYLNFLPNKE---FPVLFFGIQGC---DEREGSN 673
I+ S+ Y + + + L + + E P+L GC + E +
Sbjct: 446 AIMCWASEAMYHGQFTSHPSVAGHLLKDLPGVTDTEETRVPLLLIDTAGCGLLELEEEDS 505
Query: 674 PSWFNRIEVSKVVEIIQKLTSTGNLSEEDIGVITPYRQQVLKLNKALESLYMPDIKVGSV 733
S N EV V IQ L G + DI VI PY QV L ++L + + P++++ SV
Sbjct: 506 QSKGNPGEVRLVTLHIQALVDAG-VQAGDIAVIAPYNLQVDLLRQSLSNKH-PELEIKSV 563
Query: 734 EQFQGQERQVIIVSTVRSTIKHNDFDRKHCLGFLSNPRRFNVAVTRAISLLIIIGNPHIV 793
+ FQG+E++ ++++ VRS +RK +GFL+ RR NVAVTRA + +I + H V
Sbjct: 564 DGFQGREKEAVLLTFVRS-------NRKGEVGFLAEDRRINVAVTRARRHVAVICDSHTV 616
Query: 794 SKDPYWHQLLWYCSDNNSYQGCALPEREEFADEDPTAAECWNHE 837
+ + L+ Y +++ R F D E + HE
Sbjct: 617 NNHAFLETLVDYFTEHGEV-------RTAFEYLDDIVPENYTHE 653
>sp|Q9EQN5|SMBP2_RAT DNA-binding protein SMUBP-2 OS=Rattus norvegicus GN=Ighmbp2 PE=1
SV=1
Length = 988
Score = 152 bits (384), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 176/645 (27%), Positives = 272/645 (42%), Gaps = 115/645 (17%)
Query: 266 NVTLMRKGLYLSLVV--------PGLAERRPSLVNGDFIFAKHAYEDTSSAYQGFIHRVE 317
V+ R GLY +V P + S +GD I + ++S G + R+
Sbjct: 51 QVSGQRTGLYGQRLVTFEPRKFGPAVVLPSNSFTSGD-IVGLYDTNESSQLATGVLTRIT 109
Query: 318 ADEVHLKF--ASDFQLNHRDENLYNVQFTYNRVN---------MRRLYQATDAAQELDTE 366
V + F + DFQLN EN Y + N V + Y + A+ +D
Sbjct: 110 QKSVIVAFDESHDFQLNLDRENTYRLLKLANDVTYKRLKKALLTLKKYHSGPASSLIDV- 168
Query: 367 FLFPSESSGIRLIESNTLVPISCNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLV 426
L S S I T + + ++++ S L +I+GPPGTGKT T+V
Sbjct: 169 LLGGSTPSPATEIPPLTFYNTTLDPSQKEAVS----FALAQKEVAIIHGPPGTGKTTTVV 224
Query: 427 EAILQLYATREDARLLVCAPSNSAADHLLEKILGEKAVEVRENEIFRLNAPSRPYEDV-- 484
E ILQ A ++ ++L CAPSN A D+L+E++ + + +I RL P+R E V
Sbjct: 225 EIILQ--AVKQGLKVLCCAPSNIAVDNLVERL------ALCKKQILRLGHPARLLESVQQ 276
Query: 485 -----------NADHIRFCFFD-EQIF------------------------------KCP 502
NA + D +Q+F +
Sbjct: 277 HSLDAVLARSDNAQIVADIRRDIDQVFGKNKKTQDKREKSNFRNEIKLLRKELKEREEAA 336
Query: 503 PLAALVCYRIIISTYMSASLIYAEG----VDRGHFSHIFLDEAGQASEPESMVPISSYCK 558
+ +L ++++T AS +G + +F + +DE QA E +P+ K
Sbjct: 337 IVQSLSAADVVLATNTGAS---TDGPLKLLPEDYFDVVVVDECAQALEASCWIPLLKAPK 393
Query: 559 KDTVVVLAGDPMQLGPVIYSREAETYGMGKSYLERLFECEPYCHGNENYVTKLVRNYRSH 618
+LAGD QL P S +A G+ +S +ERL E HG V L YR H
Sbjct: 394 ----CILAGDHKQLPPTTVSHKAALAGLSRSLMERLAEK----HGAA-VVRMLAVQYRMH 444
Query: 619 PQILHLPSKLFYEEELIACKDESISCTAYLNFLPNKE---FPVLFFGIQGC---DEREGS 672
I S+ Y +L A + L + + E P+L GC + E
Sbjct: 445 QAITRWASEAMYHGQLTAHPSVAGHLLKDLPGVADTEETSVPLLLIDTAGCGLLELEEED 504
Query: 673 NPSWFNRIEVSKVVEIIQKLTSTGNLSEEDIGVITPYRQQVLKLNKALESLYMPDIKVGS 732
+ S N EV V IQ L G + DI VI PY QV L ++L + + P++++ S
Sbjct: 505 SQSKGNPGEVRLVTLHIQALVDAG-VQAGDIAVIAPYNLQVDLLRQSLSNKH-PELEIKS 562
Query: 733 VEQFQGQERQVIIVSTVRSTIKHNDFDRKHCLGFLSNPRRFNVAVTRAISLLIIIGNPHI 792
V+ FQG+E++ +I++ VRS +RK +GFL+ RR NVAVTRA + +I + H
Sbjct: 563 VDGFQGREKEAVILTFVRS-------NRKGEVGFLAEDRRINVAVTRARRHVAVICDSHT 615
Query: 793 VSKDPYWHQLLWYCSDNNSYQGCALPEREEFADEDPTAAECWNHE 837
V+ + L+ Y +++ R F D E + HE
Sbjct: 616 VNNHAFLKTLVDYFTEHGEV-------RTAFEYLDDIVPENYTHE 653
>sp|Q86AS0|Y4399_DICDI Probable helicase DDB_G0274399 OS=Dictyostelium discoideum
GN=DDB_G0274399 PE=3 SV=1
Length = 967
Score = 143 bits (360), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 126/419 (30%), Positives = 192/419 (45%), Gaps = 87/419 (20%)
Query: 440 RLLVCAPSNSAADHLLEKILGEKAVEVRENEIFRLNAPSRPY---------------EDV 484
R+L+CAPSN A D ++ +++ + LNA R Y E V
Sbjct: 463 RILLCAPSNGAVDEIVSRLIRDGL----------LNADGRKYNPNLVRVGPGSHSDVESV 512
Query: 485 NADHIRFCFFDEQIFK-------------------------CPPLAALVCYRI-IISTYM 518
+ D++ C +Q+ + LV I++T +
Sbjct: 513 SLDYMVRC--RQQLMNSNSAIPSSSASTAAATSGSSRSTQDTSSIRTLVLDEADIVATTL 570
Query: 519 S---ASLIYAEGVDRGHFSHIFLDEAGQASEPESMVPISSYCKKDTVVVLAGDPMQLGPV 575
S ASL+ G F + +DEA QA E +++PI CKK VVL GDP QL
Sbjct: 571 SFSGASLLTKMA---GGFDIVIIDEAAQAVETSTLIPIQHGCKK---VVLVGDPKQLPAT 624
Query: 576 IYSREAETYGMGKSYLERLFECEPYCHGNENYVTKLVRNYRSHPQILHLPSKLFYEEELI 635
I S A Y +S +RL E +N L YR H I PS+ FY++ L+
Sbjct: 625 IISPLAIKYKYDQSLFQRLQE--------KNSPHMLTTQYRMHSLIRAFPSRHFYQDLLL 676
Query: 636 ACKDESISCTAYLNFLPNKEF-PVLFFGIQGCDEREGSNPSWFNRIEVSKVVEIIQKLTS 694
+ T Y + N F P++F+ + E + S FN E + + Q T
Sbjct: 677 DGPNIPSRATHYHS---NPFFGPLVFYDLSWSTETKPGGGSVFNEHECKMAMYLFQLFTK 733
Query: 695 TGNLSEED----IGVITPYRQQVLKLNKALESLYMPDIKVGSVEQFQGQERQVIIVSTVR 750
+ED IG+I+PYRQQVL L + ++ P I + +V+ FQG+ER++II S VR
Sbjct: 734 V--YPDEDFASRIGIISPYRQQVLALREIFKN--YPGISIDTVDGFQGREREIIIFSCVR 789
Query: 751 STIKHNDFDRKHCLGFLSNPRRFNVAVTRAISLLIIIGNPHIVSKDPYWHQLLWYCSDN 809
+ ++ +GFLS+ RR NVA+TR S L+I+GN +S + W++L+ + +N
Sbjct: 790 APVEEG-----AGIGFLSDVRRMNVALTRPRSSLLILGNTKALSINKDWNELIQHTQNN 843
>sp|B6SFA4|MAA3_ARATH Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana GN=MAA3 PE=2
SV=1
Length = 818
Score = 142 bits (358), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 123/427 (28%), Positives = 191/427 (44%), Gaps = 73/427 (17%)
Query: 440 RLLVCAPSNSAADHLLEKIL-------------------GEKAVE----------VRENE 470
R+LVCAPSNSA D ++ ++L G KA V +
Sbjct: 376 RVLVCAPSNSALDEIVLRLLSSGLRDENAQTYTPKIVRIGLKAHHSVASVSLDHLVAQKR 435
Query: 471 IFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYAEGVDR 530
++ P + + D IR +E AA+V + S S + A+ +R
Sbjct: 436 GSAIDKPKQGTTGTDIDSIRTAILEE--------AAIV----FATLSFSGSALLAKS-NR 482
Query: 531 GHFSHIFLDEAGQASEPESMVPISSYCKKDTVVVLAGDPMQLGPVIYSREAETYGMGKSY 590
G F + +DEA QA EP +++P+++ CK+ V L GDP QL + S A+ G G S
Sbjct: 483 G-FDVVIIDEAAQAVEPATLIPLATRCKQ---VFLVGDPKQLPATVISTVAQDSGYGTSM 538
Query: 591 LERLFECEPYCHGNENYVTKLVRN-YRSHPQILHLPSKLFYEEELIACKDESISCTAYLN 649
ERL + Y K+++ YR HP+I PSK FYE L D I +
Sbjct: 539 FERLQKA--------GYPVKMLKTQYRMHPEIRSFPSKQFYEGALEDGSD--IEAQTTRD 588
Query: 650 FLPNKEF-PVLFFGIQGCDERE--GSNPSWFNRIEVSKVVEIIQKLTST--GNLSEEDIG 704
+ + F P FF I E + G+ S N EV V+ I +L + S +
Sbjct: 589 WHKYRCFGPFCFFDIHEGKESQHPGATGSRVNLDEVEFVLLIYHRLVTMYPELKSSSQLA 648
Query: 705 VITPYRQQVLKLNKALESLYMPD----IKVGSVEQFQGQERQVIIVSTVRSTIKHNDFDR 760
+I+PY QV + ++ + + + +V+ FQG+E+ V I S VR+ +
Sbjct: 649 IISPYNYQVKTFKDRFKEMFGTEAEKVVDINTVDGFQGREKDVAIFSCVRA-------NE 701
Query: 761 KHCLGFLSNPRRFNVAVTRAISLLIIIGNPHIVSKDPYWHQLLWYCSDNNSYQGCALPER 820
+GFLSN RR NV +TRA S ++++G+ + DP W L+ N + P
Sbjct: 702 NGQIGFLSNSRRMNVGITRAKSSVLVVGSAATLKSDPLWKNLIESAEQRNRLFKVSKPLN 761
Query: 821 EEFADED 827
F++E+
Sbjct: 762 NFFSEEN 768
Score = 34.7 bits (78), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 390 NLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAI 429
NLN+ Q +I+ +GL LI GPPGTGKT T++ +
Sbjct: 257 NLNKSQKEAID--VGLSRKSFVLIQGPPGTGKTQTILSIL 294
>sp|Q57568|Y104_METJA Uncharacterized ATP-dependent helicase MJ0104 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0104 PE=3 SV=1
Length = 663
Score = 137 bits (345), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 95/307 (30%), Positives = 158/307 (51%), Gaps = 44/307 (14%)
Query: 512 IIISTYMSASLIYAEGVDRGHFSHIFLDEAGQASEPESMVPISSYCKKDTVVVLAGDPMQ 571
+I++T S+ +E + F I +DE QA EP ++PI K +++AGD Q
Sbjct: 377 VIVAT---NSMAGSEILKGWEFDVIVIDEGSQAMEPSCLIPIVKGRK----LIMAGDHKQ 429
Query: 572 LGPVIYSREAETYGMGKSYLERLFECEPYCHGNENYVTKLVRNYRSHPQILHLPSKLFYE 631
L P + S E + K+ ERL + P + + L YR + +I+ P+K+FY
Sbjct: 430 LPPTVLSENEE---LKKTLFERLIKKYP------EFSSILEIQYRMNEKIMEFPNKMFYN 480
Query: 632 EELIACKDESISCTAYLNFLPNKEF-----------PVLFFGIQGCDEREGSNPSWFNRI 680
+L A DES+ L+ + +E PV F ++G + ++ +PS++N
Sbjct: 481 NKLKA--DESVKNITLLDLVKEEEIDEVDRDIINEIPVQFINVEGIERKDKESPSYYNIE 538
Query: 681 EVSKVVEIIQKLTSTGNLSEEDIGVITPYRQQVLKLNKALESLYMPDIKVGSVEQFQGQE 740
E KV+EI++KL + VITPY QV L + E + DI+V +V+ FQG+E
Sbjct: 539 EAEKVLEIVKKLVKYKIPT----NVITPYDAQVRYLRRLFEE-HNIDIEVNTVDGFQGRE 593
Query: 741 RQVIIVSTVRSTIKHNDFDRKHCLGFLSNPRRFNVAVTRAISLLIIIGNPHIVSKDPYWH 800
+ I++S VR+ GFL + RR NVA+TRA LI+IGN +++ +D ++
Sbjct: 594 NEAIVISFVRT----------KNFGFLKDLRRLNVAITRAKRKLILIGNENLLKQDKVYN 643
Query: 801 QLLWYCS 807
+++ +
Sbjct: 644 EMIKWAK 650
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 56/95 (58%), Gaps = 7/95 (7%)
Query: 390 NLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNS 449
NLNE Q +++K + YLI+GPPGTGKT T+ E I+Q + ++L A SN
Sbjct: 184 NLNESQKLAVKK--AVLSRDLYLIHGPPGTGKTRTITEVIVQEVKFNK-HKVLATADSNI 240
Query: 450 AADHLLEKILGEKAVEVRENEIFRLNAPSRPYEDV 484
AAD++LE ++ + + ++ R+ P+R +D+
Sbjct: 241 AADNILEYLIKKYP----DLKVVRVGHPTRISKDL 271
>sp|E1BMP7|DNA2_BOVIN DNA replication ATP-dependent helicase/nuclease DNA2 OS=Bos taurus
GN=DNA2 PE=3 SV=3
Length = 1061
Score = 134 bits (337), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 134/491 (27%), Positives = 226/491 (46%), Gaps = 72/491 (14%)
Query: 349 NMRRLYQATDAAQELDTEFLFPSESSGIRLIES-------NTLVPISCNLNEEQMCSIEK 401
N+ +L + T A+Q+L + E I + S +T+ I LN+ Q +++K
Sbjct: 577 NLSKLMENTRASQKLRDLIIDFREPQFISYLSSVLPHEAKDTVACILKGLNKPQRQAMKK 636
Query: 402 ILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILGE 461
+L K LI G PGTGKT T+ + LYA +L+ + ++SA D++L K+
Sbjct: 637 VLLSKDYT--LIVGMPGTGKTTTICTLVRILYAC--GFSVLLTSYTHSAVDNILLKLAKF 692
Query: 462 KAVEVRENEIFRLNAPSRPY---EDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYM 518
K +R +I +++ + + E + I+ E+++ + A C I +
Sbjct: 693 KIGFLRLGQIQKVHPDIQKFTEEEICRSKSIKSLALLEELYNSQLIVATTCMGINHPIF- 751
Query: 519 SASLIYAEGVDRGHFSHIFLDEAGQASEPESMVPISSYCKKDTVVVLAGDPMQLGPVIYS 578
R F +DEA Q S+P + P+ + ++ VL GD QL P++ +
Sbjct: 752 ----------SRKTFDFCIVDEASQISQPVCLGPLF-FSRR---FVLVGDHQQLPPLVLN 797
Query: 579 REAETYGMGKSYLERLFECEPYCHGNENYVTKLVRNYRSHPQILHLPSKLFYEEELIACK 638
REA GM +S +RL + N+N V +L YR + +I+ L +KL YE +L C
Sbjct: 798 REARALGMSESLFKRLEQ-------NKNAVVQLTVQYRMNSKIMSLSNKLTYEGKL-ECG 849
Query: 639 DESISCTAYLNFLPN-------KEF------------------PVLFFGIQGCDEREGSN 673
+ ++ A +N LPN EF PV F E
Sbjct: 850 SDKVA-NAVIN-LPNFKDVKLELEFYADYSENPWLIAAFEPNNPVCFLNTHKVPAPEQVE 907
Query: 674 PSWFNRIEVSKVVEIIQKLTSTGNLSEEDIGVITPYRQQVLKLNKALESLYMPDIKVGSV 733
+ I +K+V + + DIG+I PYRQQ+ ++ L + ++V +V
Sbjct: 908 KGGVSNIMEAKLVVFLTSVFIKAGCKPSDIGIIAPYRQQLKVISDLLAQSSVGMVEVNTV 967
Query: 734 EQFQGQERQVIIVSTVRSTIKHNDFDRKHCLG-FLSNPRRFNVAVTRAISLLIIIGNPHI 792
+++QG+++ +++VS VRS + LG L + RR NVA+TRA LI++G
Sbjct: 968 DRYQGRDKSIVVVSFVRS-------NEDGTLGELLKDWRRLNVAITRAKHKLILLGCVPS 1020
Query: 793 VSKDPYWHQLL 803
+S+ P +LL
Sbjct: 1021 LSRYPPLRKLL 1031
>sp|Q92355|SEN1_SCHPO Helicase sen1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sen1 PE=1 SV=1
Length = 1687
Score = 133 bits (334), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 97/283 (34%), Positives = 142/283 (50%), Gaps = 34/283 (12%)
Query: 532 HFSHIFLDEAGQASEPESMVPISSYCKKDTVVVLAGDPMQLGPVIYSREAETYGMGKSYL 591
+FS + +DEA QA E ++++P+ KK +L GDP QL P + S++A + +S
Sbjct: 1371 NFSTVIIDEAAQAVELDTIIPLRYGAKK---CILVGDPNQLPPTVLSKKAASLNYSQSLF 1427
Query: 592 ERLFECEPYCHGNENYVTKLVRNYRSHPQILHLPSKLFYEEELIACKDESISCTAYLNFL 651
R+ + N + L YR HP I H PSK FY+ L D T + +
Sbjct: 1428 VRIQK------NFSNQMCLLSIQYRMHPDISHFPSKKFYDSRL-EDGDNMAEKTQQVWHV 1480
Query: 652 PNKEFPVLFFGIQGCDEREGSNPSWFNRIEVSKVVEIIQKLTS-------TGNLSEEDIG 704
K F ++G ER + S +N EV +V ++ +L + TG IG
Sbjct: 1481 NPKFTQYRLFDVRG-KERTSNTMSTYNLEEVEYLVNMVDELLNKFPDVNFTGR-----IG 1534
Query: 705 VITPYRQQVLKLNKALESLY----MPDIKVGSVEQFQGQERQVIIVSTVRSTIKHNDFDR 760
VITPYR Q+ +L +A + Y M I + +V+ FQGQE+ +I S V+S
Sbjct: 1535 VITPYRSQLHELRRAFKVKYGKSFMSTIDIQTVDGFQGQEKDIIFFSCVKSY-------S 1587
Query: 761 KHCLGFLSNPRRFNVAVTRAISLLIIIGNPHIVSKDPYWHQLL 803
KH +GFL + RR NVA+TRA S L+IIGN + D W L+
Sbjct: 1588 KHGIGFLRDFRRLNVALTRARSSLLIIGNMETLKTDDLWGSLV 1630
Score = 43.1 bits (100), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 18/84 (21%)
Query: 391 LNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLY----------------A 434
+NE Q +I L G LI GPPGTGKT T++ I L +
Sbjct: 1130 VNEPQAKAIMCALDNNGFT--LIQGPPGTGKTKTIIGIISALLVDLSRYHITRPNQQSKS 1187
Query: 435 TREDARLLVCAPSNSAADHLLEKI 458
T ++L+CAPSN+A D +L ++
Sbjct: 1188 TESKQQILLCAPSNAAVDEVLLRL 1211
>sp|Q8QHA5|DNA2_XENLA DNA replication ATP-dependent helicase/nuclease DNA2 OS=Xenopus
laevis GN=dna2 PE=1 SV=1
Length = 1053
Score = 131 bits (330), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 140/526 (26%), Positives = 232/526 (44%), Gaps = 76/526 (14%)
Query: 329 FQLNHRDENLYNVQFTYNRVNMRRLYQATDAAQELDTEFLFPSESSGIRLIES------- 381
F+L+H +E ++F N+ RL + + +++L + S+ + ++ + S
Sbjct: 561 FRLDH-EEGGGGLEFHLG--NLSRLMENSSVSEKLRKLIIDFSKPNFVQHLSSILPPDAK 617
Query: 382 NTLVPISCNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARL 441
+ + I LN+ Q +++++L K LI G PGTGKT T+ + LYA +
Sbjct: 618 DIVASILRGLNKPQKQAMKRVLLSKDYT--LIVGMPGTGKTTTICTLVRILYAC--GFSV 673
Query: 442 LVCAPSNSAADHLLEKILGEKAVEVRENEIFRLNAPSRPY---EDVNADHIRFCFFDEQI 498
L+ + ++SA D++L K+ + +R +L+ + + E A I+ E++
Sbjct: 674 LLTSYTHSAVDNILLKLKKFQVGFLRLGRTQKLHPDVQEFSEEEICKAKSIKSLSALEEL 733
Query: 499 FKCPPLAALVCYRIIISTYMSASLIYAEGVDRGHFSHIFLDEAGQASEPESMVPISSYCK 558
+ P+ A C + + R F +DEA Q S+P + P+ +
Sbjct: 734 YNSQPVVATTCMGVNHPIFT-----------RRRFDFCIVDEASQISQPICLGPLFFADR 782
Query: 559 KDTVVVLAGDPMQLGPVIYSREAETYGMGKSYLERLFECEPYCHGNENYVTKLVRNYRSH 618
VL GD QL P++ S EA GM +S +RL N+ V +L YR +
Sbjct: 783 ----FVLVGDHQQLPPLVKSAEARELGMSESLFKRL-------ERNQEAVVQLTVQYRMN 831
Query: 619 PQILHLPSKLFYEEELIACKDESISCTAYL----NFLPNKEF-----------------P 657
+I+ L +KL YE L D + L L EF P
Sbjct: 832 SKIMALSNKLVYEGRLECASDRVSNAVVQLPHIKTLLLELEFRESQESMWIKDVLEPSNP 891
Query: 658 VLFFGIQGC----DEREGSNPSWFNRIEVSKVVEIIQKLTSTGNLSEEDIGVITPYRQQV 713
V F + E +G +W +K+V + KL DIG+I PYRQQ+
Sbjct: 892 VCFLNTEKIPALETEEKGGISNWIE----AKLVFHLTKLYLKAGCRPSDIGIIAPYRQQL 947
Query: 714 LKLNKALESLYMPDIKVGSVEQFQGQERQVIIVSTVRSTIKHNDFDRKHCLGFLSNPRRF 773
++ SL ++V +V+++QG+++ VIIVS VRS I D L + RR
Sbjct: 948 KMISNYFNSLSASAVEVNTVDKYQGRDKSVIIVSFVRSNIDGKLGD------LLKDWRRL 1001
Query: 774 NVAVTRAISLLIIIGNPHIVSKDPYWHQLLWYCSDNNSYQGCALPE 819
NVA+TRA LI++G +++ QL+ C+ Q LPE
Sbjct: 1002 NVALTRAKHKLIMLGCVPTLNRFDCLEQLI--CNLKTENQIYDLPE 1045
>sp|O94247|HCS1_SCHPO DNA polymerase alpha-associated DNA helicase A
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hcs1 PE=3 SV=1
Length = 660
Score = 130 bits (327), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 130/450 (28%), Positives = 202/450 (44%), Gaps = 82/450 (18%)
Query: 412 LIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILGEKAVEVRENEI 471
LI+GPPGTGKT TLVE I QL + R+LVC SN A D++++++ VR
Sbjct: 229 LIHGPPGTGKTHTLVEIIQQLVL--RNKRILVCGASNLAVDNIVDRLSSSGIPMVRLGHP 286
Query: 472 FRL---------NAPSRP----------YEDVNA------------------DHIRFCFF 494
RL + SR ED++ +IR
Sbjct: 287 ARLLPSILDHSLDVLSRTGDNGDVIRGISEDIDVCLSKITKTKNGRERREIYKNIRELRK 346
Query: 495 DEQIFKCPPLAALV-CYRIIISTYMSASLIYAEGVDRGHFSHIFLDEAGQASEPESMVPI 553
D + ++ +A +V +++ T A +G F + +DEA QA EP+ +P+
Sbjct: 347 DYRKYEAKTVANIVSASKVVFCTLHGAGSRQLKG---QRFDAVIIDEASQALEPQCWIPL 403
Query: 554 SSYCKKDTVVVLAGDPMQLGPVIYSREAETYGMGKSYLERLFECEPYCHGNENYVTKLVR 613
K V+LAGD MQL P + S+ S ERL + ++ + K
Sbjct: 404 LGMNK----VILAGDHMQLSPNVQSKRPYI-----SMFERLVK-------SQGDLVKCFL 447
Query: 614 N--YRSHPQILHLPSKLFYEEELIACKDESISCTAYLNFLPNKEF---PVLFFGIQGC-- 666
N YR H I PS FY+ +L+ ++ L + E P+ F+ G
Sbjct: 448 NIQYRMHELISKFPSDTFYDSKLVPAEEVKKRLLMDLENVEETELTDSPIYFYDTLGNYQ 507
Query: 667 -DEREGSNPSWF-----NRIEVSKVVEIIQKLTSTGNLSEEDIGVITPYRQQVLKLNKAL 720
D+R +++ N E V I L G L +DI V+TPY QV + + L
Sbjct: 508 EDDRSEDMQNFYQDSKSNHWEAQIVSYHISGLLEAG-LEAKDIAVVTPYNAQVALIRQLL 566
Query: 721 ESLYMPDIKVGSVEQFQGQERQVIIVSTVRSTIKHNDFDRKHCLGFLSNPRRFNVAVTRA 780
+ + ++++GSV++ QG+E++ II S VRS ND +GFL+ RR NVA+TR
Sbjct: 567 KEKGI-EVEMGSVDKVQGREKEAIIFSLVRS----NDVRE---VGFLAEKRRLNVAITRP 618
Query: 781 ISLLIIIGNPHIVS-KDPYWHQLLWYCSDN 809
L +IG+ + V ++HQ + + +N
Sbjct: 619 KRHLCVIGDSNTVKWASEFFHQWVDFLEEN 648
>sp|A2AKX3|SETX_MOUSE Probable helicase senataxin OS=Mus musculus GN=Setx PE=2 SV=1
Length = 2646
Score = 129 bits (323), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/306 (31%), Positives = 154/306 (50%), Gaps = 31/306 (10%)
Query: 512 IIISTYMSASLIYAEGVDRGH----FSHIFLDEAGQASEPESMVPISSYCKKDTVVVLAG 567
+I T ++ + E RG FS + +DEAGQ+ E E++ P+ C K ++L G
Sbjct: 2126 VICCTLSTSGGLLLESAFRGQGGVPFSCVIVDEAGQSCEVETLSPLIHRCNK---LILVG 2182
Query: 568 DPMQLGPVIYSREAETYGMGKSYLERLFECEPYCHGNENY------VTKLVRNYRSHPQI 621
DP QL P + S +A+ YG +S + R C+ E V +L YR HP I
Sbjct: 2183 DPKQLPPTVISMKAQEYGYDQSMMARF--CKLLEENVEQNMIGRLPVLQLTIQYRMHPDI 2240
Query: 622 LHLPSKLFYEEELIACK-DESISCTAYLNFLPNKEFPVLFFGIQGCDEREGSNPSWFNRI 680
PS Y + L + ESI C++ F P L F + ER N S+ N
Sbjct: 2241 CLFPSNYVYNKNLKTNRLTESIRCSSEWPFQP-----YLVFDVGDGSERR-DNDSYINVQ 2294
Query: 681 EVSKVVEIIQKLTST-GNLSEEDIGVITPYRQQVLKLNKALESLYMPD--IKVGSVEQFQ 737
E+ V+EII+ + ++S +IG+IT Y+ Q + K LE + +V +V+ FQ
Sbjct: 2295 EIKLVMEIIKLIKEKRKDISFRNIGIITHYKAQKTMIQKDLEKEFDKKGPAEVDTVDAFQ 2354
Query: 738 GQERQVIIVSTVRSTIKHNDFDRKHCLGFLSNPRRFNVAVTRAISLLIIIGNPHIVSKDP 797
G+++ IIV+ VR++ +GFL++ +R NV +TRA L I+G+ + ++
Sbjct: 2355 GRQKDCIIVTCVRASAVQGS------IGFLASLQRLNVTITRAKYSLFILGHLRTLMENQ 2408
Query: 798 YWHQLL 803
+W++L+
Sbjct: 2409 HWYELI 2414
Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 83/197 (42%), Gaps = 34/197 (17%)
Query: 299 KHAYEDTSSAYQGFIH--------RVEADEVHLKFASDFQLNHRDENLYNVQFTYNRVNM 350
+H +D S Y G++H R E L + L +NL + V
Sbjct: 1803 RHGMQDCSHYYCGYVHKFRRTSVMRSGKAECSLCIQTQDTLPASVKNLTRCIVISSLVTT 1862
Query: 351 RRLYQATD---AAQELDTEFLFPSE----SSGIRLIESNTLVPISCNLNEEQMCSIEKIL 403
+R +A + +L L P+ + + S +V + NE+Q +IE
Sbjct: 1863 QRKLKAMSLLSSRNQLARAVLNPNPMDFCTKDLLTTTSERIVAYLKDFNEDQKKAIETAY 1922
Query: 404 GLKGAPPY-----LIYGPPGTGKTMTLVEAILQLY--------------ATREDARLLVC 444
+ P LI+GPPGTGK+ T+V + +L A + R+LVC
Sbjct: 1923 AMVKHSPSVAKICLIHGPPGTGKSKTIVGLLYRLLTENQRKGHSDENFNAKIKQNRVLVC 1982
Query: 445 APSNSAADHLLEKILGE 461
APSN+A D L++KI+ E
Sbjct: 1983 APSNAAVDELMKKIILE 1999
>sp|Q5ZKG3|DNA2_CHICK DNA replication ATP-dependent helicase/nuclease DNA2 OS=Gallus
gallus GN=DNA2 PE=2 SV=2
Length = 992
Score = 128 bits (321), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 115/399 (28%), Positives = 191/399 (47%), Gaps = 49/399 (12%)
Query: 412 LIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILGEKAVEVRENEI 471
LI G PGTGKT T+ + L A +L+ + +++A D++L K+ K +R
Sbjct: 614 LIVGMPGTGKTTTICALVRILSAC--GFSVLLTSFTHTAVDNILLKLAKFKVGFLRLGRA 671
Query: 472 FRLNAPSRPY---EDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYAEGV 528
+++ R + E + I+ E+++ P+ A C I ++
Sbjct: 672 QKVHPDIRKFTEEEICRSKSIKSVTDLEELYNSQPVVATACMGINHPIFV---------- 721
Query: 529 DRGHFSHIFLDEAGQASEPESMVPISSYCKKDTVVVLAGDPMQLGPVIYSREAETYGMGK 588
+ F +DEA Q S+P + P+ +C K VL GD QL P++ + EA GM +
Sbjct: 722 -QKQFDFCIVDEASQISQPICLGPL--FCSKR--FVLVGDHQQLPPLVQNSEARDLGMSE 776
Query: 589 SYLERLFECEPYCHGNENYVTKLVRNYRSHPQILHLPSKLFYEEELIACKDESISCTAYL 648
S +RL + N+N V +L YR + +I+ L +KL YE +L C E +S A
Sbjct: 777 SLFKRLEQ-------NQNAVVQLTVQYRMNSKIMSLSNKLVYEGKL-ECGSEKVS-NATA 827
Query: 649 NFLPNKEFPVLFFGIQGCDEREGSNPSWFNRI-EVSKVVEIIQKLTSTGNLSEEDIGVIT 707
N LPN + L F ++ +W + E K V + T DIG+I+
Sbjct: 828 N-LPNLKMLKLEFA--------DASKTWLKEVLEPDKPVCFLN--TEKAGCRPSDIGIIS 876
Query: 708 PYRQQVLKLNKALESLYMPDIKVGSVEQFQGQERQVIIVSTVRSTIKHNDFDRKHCLG-F 766
PYR Q+ + + L ++V +++++QG+++ +IIVS VR++ N LG
Sbjct: 877 PYRHQLKVITDLMARLKENRVEVNTIDKYQGRDKSIIIVSFVRNSNDEN-------LGAL 929
Query: 767 LSNPRRFNVAVTRAISLLIIIGNPHIVSKDPYWHQLLWY 805
L + RR NVA+TRA LI++G + + P +LL +
Sbjct: 930 LKDWRRLNVAITRAKHKLIMVGCVPSLRRYPPLEKLLCH 968
>sp|D3ZG52|DNA2_RAT DNA replication ATP-dependent helicase/nuclease DNA2 OS=Rattus
norvegicus GN=Dna2 PE=3 SV=1
Length = 1059
Score = 126 bits (317), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 158/582 (27%), Positives = 264/582 (45%), Gaps = 96/582 (16%)
Query: 289 SLVNGDFIFAKHAYEDTSSAYQGFIHRVEADEVH---------LKFASDFQLNHRDENLY 339
+L+ GD I + +G++ R++ V L + F+L+ R+E
Sbjct: 511 NLMAGDRIILSGEERKLFALSKGYVKRIDTAAVTCLLDRNLSTLPETTLFRLD-REEKHG 569
Query: 340 NVQFTYNRVNMRRLYQATDAAQELDTEFLFPSESSGIRLIES-------NTLVPISCNLN 392
++ N+ +L + TD+++ L + E I + S +T+ I LN
Sbjct: 570 DINTPLG--NLSKLMENTDSSKRLRELIIDFKEPQFIAYLSSVLPHDAKDTVANILKGLN 627
Query: 393 EEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAAD 452
+ Q +++K+L K LI G PGTGKT T+ + L A +L+ + ++SA D
Sbjct: 628 KPQRQAMKKVLLSKDYT--LIVGMPGTGKTTTICALVRILSAC--GFSVLLTSYTHSAVD 683
Query: 453 HLLEKILGEKAVEVRENEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALV---- 508
++L K+ K RL + + D+ F +E++ + +A+L
Sbjct: 684 NILLKLAKFKI------GFLRLGQSHKVHPDIQK------FTEEEMCRLRSIASLAHLEE 731
Query: 509 ---CYRIIISTYMSASLIYAEGVDRGHFSHIFLDEAGQASEPESMVPISSYCKKDTVVVL 565
+ ++ +T M I R F +DEA Q S+P + P+ + ++ VL
Sbjct: 732 LYNSHPVVATTCMG---ISHPMFSRKTFDFCIVDEASQISQPICLGPLF-FSRR---FVL 784
Query: 566 AGDPMQLGPVIYSREAETYGMGKSYLERLFECEPYCHGNENYVTKLVRNYRSHPQILHLP 625
GD QL P++ +REA GM +S +RL NE+ V +L YR + +I+ L
Sbjct: 785 VGDHKQLPPLVLNREARALGMSESLFKRL-------ERNESAVVQLTIQYRMNRKIMSLS 837
Query: 626 SKLFYEEELIACKDESISCTAYLNFLPN-KEFPVLFFG-------IQGCDEREGSNPSWF 677
+KL YE +L C + ++ LPN K+ + F+ + G E + NP F
Sbjct: 838 NKLTYEGKL-ECGSDRVANAVIT--LPNLKDVRLEFYADYSDNPWLAGVFEPD--NPVCF 892
Query: 678 ---------NRIE---VSKVVE--IIQKLTST---GNLSEEDIGVITPYRQQVLKLNKAL 720
+IE VS V E +I LTST S DIG+I PYRQQ+ + L
Sbjct: 893 LNTDKVPAPEQIENGGVSNVTEARLIVFLTSTFIKAGCSPSDIGIIAPYRQQLRTITDLL 952
Query: 721 ESLYMPDIKVGSVEQFQGQERQVIIVSTVRSTIKHNDFDRKHCLG-FLSNPRRFNVAVTR 779
+ ++V +V+++QG+++ +I+VS VRS + LG L + RR NVA+TR
Sbjct: 953 ARSSVGMVEVNTVDKYQGRDKSLILVSFVRS-------NEDGTLGELLKDWRRLNVAITR 1005
Query: 780 AISLLIIIGNPHIVSKDPYWHQLLWYCSDNNSYQGCALPERE 821
A LI++G+ + + P +L + N LP RE
Sbjct: 1006 AKHKLILLGSVSSLKRFPPLEKLFDHL--NAEQLISNLPSRE 1045
>sp|Q6ZU11|YD002_HUMAN Uncharacterized protein FLJ44066 OS=Homo sapiens PE=2 SV=1
Length = 926
Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 92/281 (32%), Positives = 152/281 (54%), Gaps = 34/281 (12%)
Query: 533 FSHIFLDEAGQASEPESMVPISSY-CKKDTVVVLAGDPMQLGPVIY-SREAETYGMGKSY 590
F + LDE Q +EP S++PI+ + C+K ++L GDP QL P I S A G+ ++
Sbjct: 625 FPVVVLDECSQITEPASLLPIARFECEK---LILVGDPKQLPPTIQGSDAAHENGLEQTL 681
Query: 591 LERLFECEPYCHGNENYVTKLVRNYRSHPQILHLPSKLFYEEELIACKDESISCTAYLNF 650
+RL C + L YR HP I + + LFY+ L+ E I + L +
Sbjct: 682 FDRL------CLMGHKPIL-LRTQYRCHPAISAIANDLFYKGALMNGVTE-IERSPLLEW 733
Query: 651 LPNKEFPVLFFGIQGCDEREGSNPSWFNRIEVSKVVEIIQKLTSTGNLSEEDIGVITPYR 710
LP + F+ ++G ++ E N S+ N E + +++IQ L ++G ++ IGVIT Y+
Sbjct: 734 LPT----LCFYNVKGLEQIERDN-SFHNVAEATFTLKLIQSLIASG-IAGSMIGVITLYK 787
Query: 711 QQVLKLNKALESL--YMPDIK---VGSVEQFQGQERQVIIVSTVRSTIKHNDFDRKHCLG 765
Q+ KL L ++ + PDIK V +V+ FQG E+++II+S VR+ +G
Sbjct: 788 SQMYKLCHLLSAVDFHHPDIKTVQVSTVDAFQGAEKEIIILSCVRT----------RQVG 837
Query: 766 FLSNPRRFNVAVTRAISLLIIIGNPHIVSKDPYWHQLLWYC 806
F+ + +R NVA+TR L+I+GN + K+ W +++ +C
Sbjct: 838 FIDSEKRMNVALTRGKRHLLIVGNLACLRKNQLWGRVIQHC 878
>sp|Q7Z333|SETX_HUMAN Probable helicase senataxin OS=Homo sapiens GN=SETX PE=1 SV=4
Length = 2677
Score = 125 bits (315), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 94/310 (30%), Positives = 152/310 (49%), Gaps = 39/310 (12%)
Query: 512 IIISTYMSASLIYAEGVDRGH----FSHIFLDEAGQASEPESMVPISSYCKKDTVVVLAG 567
II T ++ + E RG FS + +DEAGQ+ E E++ P+ C K ++L G
Sbjct: 2150 IICCTLSTSGGLLLESAFRGQGGVPFSCVIVDEAGQSCEIETLTPLIHRCNK---LILVG 2206
Query: 568 DPMQLGPVIYSREAETYGMGKSYLERLFECEPYCHGNENYVT----------KLVRNYRS 617
DP QL P + S +A+ YG +S + R +C E V +L YR
Sbjct: 2207 DPKQLPPTVISMKAQEYGYDQSMMAR------FCRLLEENVEHNMISRLPILQLTVQYRM 2260
Query: 618 HPQILHLPSKLFYEEELIACKD-ESISCTAYLNFLPNKEFPVLFFGIQGCDEREGSNPSW 676
HP I PS Y L + E+I C++ F P L F + ER N S+
Sbjct: 2261 HPDICLFPSNYVYNRNLKTNRQTEAIRCSSDWPFQP-----YLVFDVGDGSERR-DNDSY 2314
Query: 677 FNRIEVSKVVEIIQKLTST-GNLSEEDIGVITPYRQQVLKLNKALESLY--MPDIKVGSV 733
N E+ V+EII+ + ++S +IG+IT Y+ Q + K L+ + +V +V
Sbjct: 2315 INVQEIKLVMEIIKLIKDKRKDVSFRNIGIITHYKAQKTMIQKDLDKEFDRKGPAEVDTV 2374
Query: 734 EQFQGQERQVIIVSTVRSTIKHNDFDRKHCLGFLSNPRRFNVAVTRAISLLIIIGNPHIV 793
+ FQG+++ +IV+ VR+ +GFL++ +R NV +TRA L I+G+ +
Sbjct: 2375 DAFQGRQKDCVIVTCVRANSIQGS------IGFLASLQRLNVTITRAKYSLFILGHLRTL 2428
Query: 794 SKDPYWHQLL 803
++ +W+QL+
Sbjct: 2429 MENQHWNQLI 2438
Score = 53.5 bits (127), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 19/91 (20%)
Query: 390 NLNEEQMCSIEKILGLKGAPPY-----LIYGPPGTGKTMTLVEAILQLY----------- 433
+ NE+Q +IE + P LI+GPPGTGK+ T+V + +L
Sbjct: 1933 DFNEDQKKAIETAYAMVKHSPSVAKICLIHGPPGTGKSKTIVGLLYRLLTENQRKGHSDE 1992
Query: 434 ---ATREDARLLVCAPSNSAADHLLEKILGE 461
A + R+LVCAPSN+A D L++KI+ E
Sbjct: 1993 NSNAKIKQNRVLVCAPSNAAVDELMKKIILE 2023
>sp|P51530|DNA2_HUMAN DNA replication ATP-dependent helicase/nuclease DNA2 OS=Homo sapiens
GN=DNA2 PE=1 SV=3
Length = 1060
Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 141/568 (24%), Positives = 247/568 (43%), Gaps = 80/568 (14%)
Query: 264 MENVTLMRKGLYL-SLVVPGLAERRPSLVNGDFIFAKHAYEDTSSAYQGFIHRVEADEV- 321
ME+V ++ G YL + A +L+ GD + + +G++ + V
Sbjct: 485 MEHVKIVCDGQYLHNFQCKHGAIPVTNLMAGDRVIVSGEERSLFALSRGYVKEINMTTVT 544
Query: 322 -----HLKFASDFQLNHRDENLYNVQFTYNRVNMRRLYQATDAAQELDTEFLFPSESSGI 376
+L + L D+ N N+ +L + T +++L + E I
Sbjct: 545 CLLDRNLSVLPESTLFRLDQEEKNCDIDTPLGNLSKLMENTFVSKKLRDLIIDFREPQFI 604
Query: 377 RLIES-------NTLVPISCNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAI 429
+ S +T+ I LN+ Q +++K+L K LI G PGTGKT T+ +
Sbjct: 605 SYLSSVLPHDAKDTVACILKGLNKPQRQAMKKVLLSKDYT--LIVGMPGTGKTTTICTLV 662
Query: 430 LQLYATREDARLLVCAPSNSAADHLLEKILGEKAVEVRENEIFRLNAPSRPY---EDVNA 486
LYA +L+ + ++SA D++L K+ K +R +I +++ + + E +
Sbjct: 663 RILYAC--GFSVLLTSYTHSAVDNILLKLAKFKIGFLRLGQIQKVHPAIQQFTEQEICRS 720
Query: 487 DHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYAEGVDRGHFSHIFLDEAGQASE 546
I+ E+++ + A C I + R F +DEA Q S+
Sbjct: 721 KSIKSLALLEELYNSQLIVATTCMGINHPIF-----------SRKIFDFCIVDEASQISQ 769
Query: 547 PESMVPISSYCKKDTVVVLAGDPMQLGPVIYSREAETYGMGKSYLERLFECEPYCHGNEN 606
P + P+ + ++ VL GD QL P++ +REA GM +S +RL N++
Sbjct: 770 PICLGPLF-FSRR---FVLVGDHQQLPPLVLNREARALGMSESLFKRL-------EQNKS 818
Query: 607 YVTKLVRNYRSHPQILHLPSKLFYEEELIACKDESISCTAYLN----------------- 649
V +L YR + +I+ L +KL YE +L D+ + L
Sbjct: 819 AVVQLTVQYRMNSKIMSLSNKLTYEGKLECGSDKVANAVINLRHFKDVKLELEFYADYSD 878
Query: 650 -------FLPNKEFPVLFFGIQGCDEREGSNPSWFNRIEVSKVVEIIQKLTSTGNLSEED 702
F PN PV F E + + +K++ + + S D
Sbjct: 879 NPWLMGVFEPNN--PVCFLNTDKVPAPEQVEKGGVSNVTEAKLIVFLTSIFVKAGCSPSD 936
Query: 703 IGVITPYRQQVLKLNKAL-ESLYMPDIKVGSVEQFQGQERQVIIVSTVRSTIKHNDFDRK 761
IG+I PYRQQ+ +N L S+ M ++V +V+++QG+++ +++VS VRS ++
Sbjct: 937 IGIIAPYRQQLKIINDLLARSIGM--VEVNTVDKYQGRDKSIVLVSFVRS-------NKD 987
Query: 762 HCLG-FLSNPRRFNVAVTRAISLLIIIG 788
+G L + RR NVA+TRA LI++G
Sbjct: 988 GTVGELLKDWRRLNVAITRAKHKLILLG 1015
>sp|Q6ZQJ5|DNA2_MOUSE DNA replication ATP-dependent helicase/nuclease DNA2 OS=Mus musculus
GN=Dna2 PE=2 SV=2
Length = 1062
Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 137/488 (28%), Positives = 225/488 (46%), Gaps = 78/488 (15%)
Query: 349 NMRRLYQATDAAQELDTEFLFPSESSGIRLIES-------NTLVPISCNLNEEQMCSIEK 401
N+ +L ++TD ++ L + E I + S +T+ I LN+ Q ++++
Sbjct: 578 NLSKLMESTDPSKRLRELIIDFREPQFIAYLSSVLPHDAKDTVANILKGLNKPQRQAMKR 637
Query: 402 ILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILGE 461
+L K LI G PGTGKT T+ + L A +L+ + ++SA D++L K+
Sbjct: 638 VLLSKDY--TLIVGMPGTGKTTTICALVRILSAC--GFSVLLTSYTHSAVDNILLKLAKF 693
Query: 462 KAVEVRENEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALV-------CYRIII 514
K RL + + D+ F +E+I + +A+L + I+
Sbjct: 694 KV------GFLRLGQSHKVHPDIQK------FTEEEICRSRSIASLAHLEELYNSHPIVA 741
Query: 515 STYMSASLIYAEGVDRGHFSHIFLDEAGQASEPESMVPISSYCKKDTVVVLAGDPMQLGP 574
+T M I R F +DEA Q S+P + P+ + ++ VL GD QL P
Sbjct: 742 TTCMG---INHPIFSRKTFDFCIVDEASQISQPVCLGPLF-FSRR---FVLVGDHQQLPP 794
Query: 575 VIYSREAETYGMGKSYLERLFECEPYCHGNENYVTKLVRNYRSHPQILHLPSKLFYEEEL 634
++ +REA GM +S +RL NE+ V +L YR + +I+ L +KL Y +L
Sbjct: 795 LVVNREARALGMSESLFKRL-------ERNESAVVQLTVQYRMNRKIMSLSNKLTYAGKL 847
Query: 635 IACKDESISCTAYLNFLPNKEFPVLFFG-------IQGCDEREGSNPSWF---------N 678
D + L L + + + + G E + NP F
Sbjct: 848 ECGSDRVANAVLALPNLKDARLSLQLYADYSDSPWLAGVLEPD--NPVCFLNTDKVPAPE 905
Query: 679 RIE---VSKVVE--IIQKLTST---GNLSEEDIGVITPYRQQVLKLNKALESLYMPDIKV 730
++E VS V E +I LTST S DIGVI PYRQQ+ ++ L + ++V
Sbjct: 906 QVENGGVSNVTEARLIVFLTSTFIKAGCSPSDIGVIAPYRQQLRIISDLLARSSVGMVEV 965
Query: 731 GSVEQFQGQERQVIIVSTVRSTIKHNDFDRKHCLG-FLSNPRRFNVAVTRAISLLIIIGN 789
+V+++QG+++ +I+VS VRS + LG L + RR NVA+TRA LI++G+
Sbjct: 966 NTVDKYQGRDKSLILVSFVRS-------NEDGTLGELLKDWRRLNVALTRAKHKLILLGS 1018
Query: 790 PHIVSKDP 797
+ + P
Sbjct: 1019 VSSLKRFP 1026
>sp|O94387|YGSA_SCHPO Uncharacterized ATP-dependent helicase C29A10.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC29A10.10c PE=3 SV=1
Length = 1944
Score = 124 bits (310), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 97/304 (31%), Positives = 153/304 (50%), Gaps = 38/304 (12%)
Query: 513 IISTYMSAS---LIYAEGVDRGHFSHIFLDEAGQASEPESMVPISSYCKKDTVVVLAGDP 569
I+ +SAS L+ G+ F + +DEA QA E S++P+ C+ V+ GDP
Sbjct: 1490 IVCATLSASGHELLLNAGLT---FRTVIIDEAAQAVELSSIIPLKYGCES---CVMVGDP 1543
Query: 570 MQLGPVIYSREAETYGMGKSYLERLFECEPYCHGNENYVTKLVRNYRSHPQILHLPSKLF 629
QL P + S+ + +G +S R+F+ NE+ L YR +P+I PSK F
Sbjct: 1544 NQLPPTVLSKTSAKFGYSQSLYVRMFK-----QHNESACL-LSIQYRMNPEISRFPSKFF 1597
Query: 630 YEEELIACKDESISCTAYLNFLPNKEFPVL----FFGIQGCDEREGSNPSWFNRIEVSKV 685
Y +L+ + S + P E P L FF + G + S S +N E S +
Sbjct: 1598 YNSKLLDGPNMSAVTSR-----PWHEDPQLGIYRFFNVHGTEAFSNSK-SLYNVEEASFI 1651
Query: 686 VEIIQKLTSTG-NLS-EEDIGVITPYRQQVLKLNKALE----SLYMPDIKVGSVEQFQGQ 739
+ + ++L N+ E IGV+TPYR QV +L + S+ + + +V+ FQGQ
Sbjct: 1652 LLLYERLIQCYLNIDFEGKIGVVTPYRSQVQQLRSQFQRKYGSIIFKHLDIHTVDGFQGQ 1711
Query: 740 ERQVIIVSTVRSTIKHNDFDRKHCLGFLSNPRRFNVAVTRAISLLIIIGNPHIVSKDPYW 799
E+ +II S VRS++ +GFL + RR NVA+TRA S L I+GN + ++ +
Sbjct: 1712 EKDIIIFSCVRSSMSGG-------IGFLQDLRRLNVALTRAKSSLYIVGNSKPLMQEDIF 1764
Query: 800 HQLL 803
+ L+
Sbjct: 1765 YSLI 1768
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 33/146 (22%)
Query: 340 NVQFTYNRVNMRRLYQATDAAQELDTEFLFPSESSGIRLIESNTLVPISCNLNEEQMCSI 399
N++FT ++L+ AT + +E R++++N + + N +++ I
Sbjct: 1212 NIRFT-----AQKLFNATTSLREFAALKSLRHLPLSQRILDAN-VTRLPSNFTDDKKQKI 1265
Query: 400 EKILGLKGAPPYLIY------------GPPGTGKTMTLVEAI----------LQLYA--- 434
K G+ Y IY GPPGTGKT T++ I LQ
Sbjct: 1266 MKSYGVNEPQAYAIYASSVNDGFTLIQGPPGTGKTKTILGMIGAVLTSSSQGLQFNVPGQ 1325
Query: 435 TREDA--RLLVCAPSNSAADHLLEKI 458
TR+ + ++L+CAPSN+A D +L +I
Sbjct: 1326 TRKTSKNKILICAPSNAAIDEILLRI 1351
>sp|P38859|DNA2_YEAST DNA replication ATP-dependent helicase/nuclease DNA2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DNA2 PE=1 SV=1
Length = 1522
Score = 110 bits (276), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 126/531 (23%), Positives = 218/531 (41%), Gaps = 87/531 (16%)
Query: 341 VQFTYNRVNMRRLYQATDAAQELDTEFLFPSESSGIRLIESNTLVP------ISCNLNEE 394
V R + R + +D E+ L + + R + ++P + NLN++
Sbjct: 998 VDIVDERSKLCRKTKRSDGGNEILRSLLVDNRAPKFRDANDDPVIPYKLSKDTTLNLNQK 1057
Query: 395 QMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHL 454
+ +I+K++ + LI G PGTGKT + E I L + E R+L+ + ++SA D++
Sbjct: 1058 E--AIDKVM--RAEDYALILGMPGTGKTTVIAEIIKILVS--EGKRVLLTSYTHSAVDNI 1111
Query: 455 LEKILGEKAVEVRENEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIII 514
L K+ I RL + + D P A++ Y +
Sbjct: 1112 LIKLRNTNI------SIMRLGMKHKVHPDTQK-------------YVPNYASVKSYNDYL 1152
Query: 515 STYMSASLIYAE---------GVDRGHFSHIFLDEAGQASEPESMVPISSYCKKDTVVVL 565
S S S++ ++ F ++ LDEA Q S P ++ P+ + ++
Sbjct: 1153 SKINSTSVVATTCLGINDILFTLNEKDFDYVILDEASQISMPVALGPL----RYGNRFIM 1208
Query: 566 AGDPMQLGPVIYSREAETYGMGKSYLERLFECEPYCHGNENYVTKLVRNYRSHPQILHLP 625
GD QL P++ + A G+ +S LF+ +C + V +L YR I+ L
Sbjct: 1209 VGDHYQLPPLVKNDAARLGGLEES----LFKT--FCEKHPESVAELTLQYRMCGDIVTLS 1262
Query: 626 SKLFYE--------------------EELIACKDESISCTAYLNFLPNKEFPVLFFGIQG 665
+ L Y+ E L ++ES + +L + V+F
Sbjct: 1263 NFLIYDNKLKCGNNEVFAQSLELPMPEALSRYRNESANSKQWLEDILEPTRKVVFLNYDN 1322
Query: 666 CDE--REGSNPSWFNRIEVSKVVEIIQKLTSTGNLSEEDIGVITPYRQQVLKLNKALESL 723
C + + + N E ++ ++ + +G + EDIGV+T YR Q+ L K
Sbjct: 1323 CPDIIEQSEKDNITNHGEAELTLQCVEGMLLSG-VPCEDIGVMTLYRAQLRLLKKIFNKN 1381
Query: 724 YMPDIKVGSVEQFQGQERQVIIVSTVRSTIKHNDFDRKHCLGFLSNPRRFNVAVTRAISL 783
+++ + +QFQG++++ II+S VR + N L RR NVA+TRA S
Sbjct: 1382 VYDGLEILTADQFQGRDKKCIIISMVRRNSQLNGG------ALLKELRRVNVAMTRAKSK 1435
Query: 784 LIIIGNPHIVSKDPYWHQLLWYCSDNN-SYQGC-------ALPEREEFADE 826
LIIIG+ + P + + N Y C P+R DE
Sbjct: 1436 LIIIGSKSTIGSVPEIKSFVNLLEERNWVYTMCKDALYKYKFPDRSNAIDE 1486
>sp|Q00416|SEN1_YEAST Helicase SEN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SEN1 PE=1 SV=2
Length = 2231
Score = 110 bits (275), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 100/364 (27%), Positives = 159/364 (43%), Gaps = 51/364 (14%)
Query: 505 AALVCYRIIISTYMSASLIYAEGVDRGHFSHIFLDEAGQASEPESMVPISSYCKKDTVVV 564
A ++ II + +S S F + +DEA Q +E S++P+ K+ +
Sbjct: 1556 AHILAVSDIICSTLSGSAHDVLATMGIKFDTVIIDEACQCTELSSIIPLRYGGKR---CI 1612
Query: 565 LAGDPMQLGPVIYSREAETYGMGKSYLERLFE-CEPYCHGNENYVTKLVRNYRSHPQILH 623
+ GDP QL P + S A + +S R+ + PY L YR HP I
Sbjct: 1613 MVGDPNQLPPTVLSGAASNFKYNQSLFVRMEKNSSPYL---------LDVQYRMHPSISK 1663
Query: 624 LPSKLFYEEELIACKDESISCTAYLNFLPNKEF----PVLFFGI-QGCDEREGSNPSWFN 678
PS FY+ L I LN P + P FF I G E+ S+ N
Sbjct: 1664 FPSSEFYQGRLKDGPGMDI-----LNKRPWHQLEPLAPYKFFDIISGRQEQNAKTMSYTN 1718
Query: 679 RIEVSKVVEII--------QKLTSTGNLSEEDIGVITPYRQQVLKLNKALE----SLYMP 726
E+ +E++ K+ TG IG+I+PYR+Q+ K+ K +
Sbjct: 1719 MEEIRVAIELVDYLFRKFDNKIDFTGK-----IGIISPYREQMQKMRKEFARYFGGMINK 1773
Query: 727 DIKVGSVEQFQGQERQVIIVSTVRSTIKHNDFDRKHCLGFLSNPRRFNVAVTRAISLLII 786
I +++ FQGQE+++I++S VR+ D K +GFL + RR NVA+TRA + + +
Sbjct: 1774 SIDFNTIDGFQGQEKEIILISCVRAD------DTKSSVGFLKDFRRMNVALTRAKTSIWV 1827
Query: 787 IGNPHIVSKDPYWHQLLWYCSDNNSYQGCALPEREEFADEDPTAAECWNHEEEIP-QSFQ 845
+G+ ++K W L+ D + C F D A+ + +P S Q
Sbjct: 1828 LGHQRSLAKSKLWRDLIEDAKD----RSCLAYACSGFLDPRNNRAQSILRKFNVPVPSEQ 1883
Query: 846 EDNW 849
ED++
Sbjct: 1884 EDDY 1887
Score = 38.5 bits (88), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 25/93 (26%)
Query: 385 VPISCNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDA----- 439
V S LN Q +I + +G LI GPPGTGKT T++ I +T+ +
Sbjct: 1329 VKKSYKLNTSQAEAIVNSVSKEGFS--LIQGPPGTGKTKTILGIIGYFLSTKNASSSNVI 1386
Query: 440 ------------------RLLVCAPSNSAADHL 454
++L+CAPSN+A D +
Sbjct: 1387 KVPLEKNSSNTEQLLKKQKILICAPSNAAVDEI 1419
>sp|Q09449|YQ12_CAEEL Uncharacterized ATP-dependent helicase C05C10.2 OS=Caenorhabditis
elegans GN=C05C10.2 PE=2 SV=1
Length = 1551
Score = 103 bits (257), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 127/507 (25%), Positives = 217/507 (42%), Gaps = 93/507 (18%)
Query: 360 AQELDTEFLFPSESSGIRLIESNTLVPISCNLNEEQMCSIEKILGLKGAPPYLIYGPPGT 419
+++ T+F FPS P LN+ Q C ++L L G P + P G
Sbjct: 981 SEDTPTQFYFPS-------------TPEPLALNKYQ-CEYVQML-LDGNPLIIGSSPFGC 1025
Query: 420 GKTMTLVEAILQLYATREDARLLVCAPSNSAADHLL---EKILGEKAVEVRENEIFRLNA 476
GK+MT++ A L+LY +++ + L+ SN A+ +L+ +++ ++++ + R +
Sbjct: 1026 GKSMTIITAALELYKLKKNRKQLLITQSNYASVNLIDIAQRVCLSGDDDLKDLKFVRFVS 1085
Query: 477 -------PSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYAEGVD 529
PS D + ++ F + L L C + M + +I + V+
Sbjct: 1086 EKNWNELPSNCRTDSDMPYLMNKLFKDWAMGRIDLTNLTCLKTHHYVQMVSHIIKNDLVN 1145
Query: 530 ----RGHFSHIFLDEAGQASE-PESMVPISSYC---KKDTVVVLAGD------------P 569
H + I+ + S P + + ++ K D V+V A
Sbjct: 1146 PMLFGDHIAQIYDKLSADFSRAPHAQTLVEAFFMIYKPDLVMVTADSAKGLLNILRDVCA 1205
Query: 570 MQLGPVIYSREAETYGMGKSYLERLF-------ECEPYCH----------GNENYVTKLV 612
+Q+ E G+ KS+ F + PYC G N + + +
Sbjct: 1206 VQIDEASQLAECTLLGLLKSFNNASFGLIGDIHQLPPYCEEGLEGKLKDFGIGNTMERAI 1265
Query: 613 RN-----------YRSHPQILHLPSKLFYEEELIACKDE---SISCTAYLNFLPNKEFPV 658
+ YR HP+ L S+LFY+ L++ E S T +F PN +FP+
Sbjct: 1266 KEKMFPVCTLRNVYRCHPKTTELLSELFYDGALVSGVSELARSDFMTKRDDFWPNPKFPM 1325
Query: 659 LFFGIQGCDEREGSNPSWFNRIEVSKVVEIIQKLTS--TGNLSEEDIGVITPYRQQVLKL 716
+F G + G++ S N E S V EI+Q L + ++ DIGVI+ Y Q L
Sbjct: 1326 MFVNNTGASTKMGTSTS--NSSEKSIVGEIVQNLINDPRNPVNPSDIGVISFYSAQTSIL 1383
Query: 717 NKALESLYMPDIKVGSVEQFQGQERQVIIVSTVRSTIKHNDFDRKHCLGFLSNPRRFNVA 776
E L +K G+V+ FQG E+++II+ + I +DF + LSN R NVA
Sbjct: 1384 T---EHLRGSGVKCGTVDAFQGSEKEIIIMCSTNERI--SDFMQ------LSN--RLNVA 1430
Query: 777 VTRAISLLIIIGNPHIVSKDPYWHQLL 803
++RA + IIIG+ + + YW ++
Sbjct: 1431 MSRAKQVTIIIGHLDGLRRANYWSTIV 1457
>sp|P32644|ECM32_YEAST Putative ATP-dependent RNA helicase ECM32 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ECM32 PE=1 SV=1
Length = 1121
Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 131/504 (25%), Positives = 203/504 (40%), Gaps = 116/504 (23%)
Query: 382 NTLVPISCNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARL 441
N L S LN Q ++E +L ++ GPPGTGKT T+ E I+Q+ +
Sbjct: 640 NRLKFSSDKLNRSQKTAVEHVLN---NSITILQGPPGTGKTSTIEEIIIQVIERFHAFPI 696
Query: 442 LVCAPSNSAADHLLEKILGEKAVEVRENEIFRLNAPSRPYEDVNADH--IRFCFFDEQIF 499
L A SN A D++ EKI+ E +++ I R+ + + + DH C +
Sbjct: 697 LCVAASNIAIDNIAEKIM-ENRPQIK---ILRI-LSKKKEQQYSDDHPLGEICLHNIVYK 751
Query: 500 KCPPLAALVCY---------------------RIIISTYMSASLIYAEGVDRG------- 531
P +V R+ + +I+ + G
Sbjct: 752 NLSPDMQVVANKTRRGEMISKSEDTKFYKEKNRVTNKVVSQSQIIFTTNIAAGGRELKVI 811
Query: 532 -HFSHIFLDEAGQASEPESMVPISSYCKKDTVVVLAGDPMQLGPVIYSREAETYGMGKSY 590
+ +DEA Q+SE ++VP+S ++ V V GD QL + ET S
Sbjct: 812 KECPVVIMDEATQSSEASTLVPLSLPGIRNFVFV--GDEKQLSSFSNIPQLET-----SL 864
Query: 591 LERLFECEPYCHGNENYVTKLVRNYRSHPQILHLPSKLFYEEELIACKDESISCTAYLNF 650
ER+ +G L YR HP+I P K Y EL KD T
Sbjct: 865 FERVL-----SNGTYKNPLMLDTQYRMHPKISEFPIKKIYNGEL---KD---GVTDEQKA 913
Query: 651 LPNKEFPVLFFGIQGCD----------EREGSNPSWFNRIEVSKVVEIIQKLTSTGNLSE 700
P + P+ F+ CD +R+ ++ N+ E ++V+IIQ L +
Sbjct: 914 WPGVQHPLFFYQ---CDLGPESRVRSTQRDIVGFTYENKHECVEIVKIIQILMLDKKVPL 970
Query: 701 EDIGVITPYRQQ------VLKLNK-------ALESLY----------------------- 724
E+IGVITPY Q +L N +++ Y
Sbjct: 971 EEIGVITPYSAQRDLLSDILTKNVVINPKQISMQQEYDEIELFNAAGSQGTAGSLQNNVI 1030
Query: 725 --MPDIKVGSVEQFQGQERQVIIVSTVRSTIKHNDFDRKHCLGFLSNPRRFNVAVTRAIS 782
+ + V +V+ FQG E+ II S VR+ ++ +GFL + RR NVA+TRA
Sbjct: 1031 NIINGLHVATVDSFQGHEKSFIIFSCVRNNTENK-------IGFLRDKRRLNVALTRAKH 1083
Query: 783 LLIIIGNPHIVSK-DPYWHQLLWY 805
LI++GN +++ K DP W + Y
Sbjct: 1084 GLIVVGNKNVLRKGDPLWKDYITY 1107
>sp|Q9URU2|DNA2_SCHPO DNA replication ATP-dependent helicase/nuclease dna2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=dna2 PE=1 SV=2
Length = 1397
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 118/439 (26%), Positives = 197/439 (44%), Gaps = 66/439 (15%)
Query: 391 LNEEQMCSIEKILGLKGAPPY-LIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNS 449
LNE+Q+ +++K A Y LI G PGTGKT T+ I L A ++ + + ++
Sbjct: 932 LNEDQITALKKC---HAAEHYSLILGMPGTGKTTTISSLIRSLLAKKKKIL--LTSFTHL 986
Query: 450 AADHLLEKILGEKAVEVRENEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVC 509
A D++L K+ G ++ I RL +P + + V FC + F LA+L
Sbjct: 987 AVDNILIKLKG------CDSTIVRLGSPHKIHPLVK----EFCLTEGTTFD--DLASLKH 1034
Query: 510 YRIIISTYMSASL-IYAEGVDRGHFSHIFLDEAGQASEPESMVPISSYCKKDTVVVLAGD 568
+ +SL +Y ++ F + +DEA Q P + P+ K VL GD
Sbjct: 1035 FYEDPQIVACSSLGVYHSIFNKRKFDYCIIDEASQIPLPICLGPLQLAEK----FVLVGD 1090
Query: 569 PMQLGPVIYSREAETYGMGKSYLERLFECEPYCHGNENYVTKLVRNYRSHPQILHLPSKL 628
QL P++ + G+ S + L E P VT L YR + I L S+L
Sbjct: 1091 HYQLPPLVKNSRTSKDGLSLSLFKLLSEKHPEA------VTTLRLQYRMNEDINSLSSEL 1144
Query: 629 FYEEELIACKDESIS--------------------CTAYLNFLPNKEFPVLFFG---IQG 665
Y L+ C ++IS ++N L N V+FF I G
Sbjct: 1145 IYGGNLV-CGSKTISQKKLILPKAHLSDGLPDSSSSLHWVNKLINPSHSVIFFNTDDILG 1203
Query: 666 CDEREGSNPSWFNRIEVSKVVEIIQKLTSTGNLSEEDIGVITPYRQQVLKLNKALESLYM 725
+ + +N N E + + + G + + IG+I+ Y+ QV L+K L+S
Sbjct: 1204 VESK--TNNILENHTEAFLIEQAVSSFLERG-VKQSSIGIISIYKSQVELLSKNLKSF-- 1258
Query: 726 PDIKVGSVEQFQGQERQVIIVSTVRSTIKHNDFDRKHCLG-FLSNPRRFNVAVTRAISLL 784
+I++ +V+++QG+++ +I++S VRS + K+ +G L + R NVA++RA
Sbjct: 1259 TEIEINTVDRYQGRDKDIILISFVRS-------NSKNLVGELLRDWHRLNVALSRAKVKC 1311
Query: 785 IIIGNPHIVSKDPYWHQLL 803
I+ G+ +S LL
Sbjct: 1312 IMFGSLSTLSSSNIVSHLL 1330
>sp|F6QXW0|DNA2_XENTR DNA replication ATP-dependent helicase/nuclease DNA2 OS=Xenopus
tropicalis GN=dna2 PE=3 SV=1
Length = 1048
Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 109/251 (43%), Gaps = 42/251 (16%)
Query: 585 GMGKSYLERLFECEPYCHGNENYVTKLVRNYRSHPQILHLPSKLFYEEELIACKDESISC 644
GM +S +RL N+ V +L YR + QI+ L +KL YE L D +
Sbjct: 800 GMSESLFKRL-------ERNQEAVVQLTVQYRMNSQIMALSNKLVYEGRLECASDRVSNA 852
Query: 645 TAYL----NFLPNKEF-----------------PVLFFGIQGC----DEREGSNPSWFNR 679
L L EF PV F + E +G +W
Sbjct: 853 VVKLPHIKTLLLELEFRESQESMWIKDVLEPSNPVCFLNTEKIPALETEEKGGISNWIE- 911
Query: 680 IEVSKVVEIIQKLTSTGNLSEEDIGVITPYRQQVLKLNKALESLYMPDIKVGSVEQFQGQ 739
+K+V + KL DIG+I PYRQQ+ ++ SL ++V +V+++QG+
Sbjct: 912 ---AKLVFCLTKLFLKAGCRPSDIGIIAPYRQQLKVISNYFNSLSASAVEVNTVDKYQGR 968
Query: 740 ERQVIIVSTVRSTIKHNDFDRKHCLGFLSNPRRFNVAVTRAISLLIIIGNPHIVSKDPYW 799
++ VIIVS VRS I D L + RR NVA+TRA LI++G +S+
Sbjct: 969 DKSVIIVSFVRSNIDGKLGD------LLKDWRRLNVALTRAKHKLIMLGCVPTLSRFLCL 1022
Query: 800 HQLLWYCSDNN 810
QL+ + N
Sbjct: 1023 EQLICHLKSKN 1033
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 341,118,898
Number of Sequences: 539616
Number of extensions: 15088434
Number of successful extensions: 39065
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 143
Number of HSP's that attempted gapping in prelim test: 38556
Number of HSP's gapped (non-prelim): 358
length of query: 874
length of database: 191,569,459
effective HSP length: 126
effective length of query: 748
effective length of database: 123,577,843
effective search space: 92436226564
effective search space used: 92436226564
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)