Query 002850
Match_columns 874
No_of_seqs 153 out of 215
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 04:04:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002850.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/002850hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fbqa2 a.121.1.1 (A:81-214) T 15.7 1.3E+02 0.0093 25.8 6.4 67 358-424 23-94 (134)
2 d1m56d_ f.23.8.1 (D:) Bacteria 9.2 1.2E+02 0.0085 22.3 3.1 25 405-429 17-41 (42)
3 d2g3ra1 b.34.9.1 (A:1485-1537) 9.0 32 0.0023 25.9 -0.1 31 826-858 10-40 (53)
4 d1ppjg_ f.23.13.1 (G:) Ubiquin 8.7 2.5E+02 0.018 22.6 5.4 26 331-356 49-75 (75)
5 d1khda1 a.46.2.1 (A:12-80) Ant 8.2 1.2E+02 0.0088 23.2 3.2 39 207-254 1-49 (69)
6 d1qled_ f.23.8.1 (D:) Bacteria 7.9 1.5E+02 0.011 21.8 3.3 25 405-429 18-42 (43)
7 d1wyha1 g.39.1.3 (A:35-66) Fou 6.9 31 0.0023 24.2 -0.9 13 456-468 11-23 (32)
8 d2j5pa1 a.4.5.67 (A:1261-1329) 6.3 83 0.006 25.2 1.2 20 379-398 25-44 (69)
9 d2h3la1 b.36.1.1 (A:1310-1412) 5.8 62 0.0045 26.9 0.2 38 194-231 65-102 (103)
10 d1x5wa2 g.37.1.1 (A:36-64) Zin 5.1 44 0.0032 22.7 -1.0 14 553-566 4-17 (29)
No 1
>d2fbqa2 a.121.1.1 (A:81-214) Transcriptional regulator PsrA {Pseudomonas aeruginosa [TaxId: 287]}
Probab=15.71 E-value=1.3e+02 Score=25.81 Aligned_cols=67 Identities=13% Similarity=0.048 Sum_probs=46.0
Q ss_pred ccccccccchhhhhhhhcccchhhHHhhhcCch-hHHHhhccC----CchHHHHHHHHHHHHhhhHHHHHHH
Q 002850 358 ASSRRWSNLSKWMFREFNEVDHLFKHRINSSVV-HSSDYLKQF----PSPIISILAKFISFVSGGFAAVLII 424 (874)
Q Consensus 358 lgsRrWSp~ArWkfREFNELpH~f~~RL~~Sy~-~A~~YL~qF----Ps~~l~iIAkfVsFvaGS~~AVLii 424 (874)
-+.++|+.+.|.--|+++|=.=.+++=++.-|. .+.+|++-+ |.-.-..+.....|+.|+++..+.-
T Consensus 23 ~~~~~~~~f~rLl~R~~~ep~~~lr~~~~~~~~p~~~rf~~al~~alP~l~~~el~wr~~f~vga~~~~l~~ 94 (134)
T d2fbqa2 23 RSGNDLSIFMRLLGLAFSQSQGHLRKYLEEVYGKVFRRYMLLVNEAAPKLPPIELFWRVHFMLGAAAFSMSG 94 (134)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCchhHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 357899999999999999976667777777774 456665543 4333344666667777777655443
No 2
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=9.17 E-value=1.2e+02 Score=22.31 Aligned_cols=25 Identities=16% Similarity=0.339 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhcC
Q 002850 405 SILAKFISFVSGGFAAVLIIIAFLE 429 (874)
Q Consensus 405 ~iIAkfVsFvaGS~~AVLiiLsllD 429 (874)
.-..|++...+=+++++|+.|++++
T Consensus 17 ~gFik~~t~~~i~~i~~liflAi~n 41 (42)
T d1m56d_ 17 AGFVRMVTWAAVVIVAALIFLALAN 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3466777777888888888888865
No 3
>d2g3ra1 b.34.9.1 (A:1485-1537) p53-binding protein 1, 53BP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.98 E-value=32 Score=25.91 Aligned_cols=31 Identities=29% Similarity=0.486 Sum_probs=21.4
Q ss_pred hcccccccccccchhhhhccCCccccccccCCC
Q 002850 826 YWRNSHKLSRTSYIDDLEAGSGDVNLHFDDIYN 858 (874)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 (874)
.|.+..-.-.-+-|.|+.+| .+.|.|||-|.
T Consensus 10 kwssn~yfysg~i~rd~g~~--r~rl~fdd~~e 40 (53)
T d2g3ra1 10 KWSSNGYFYSGKITRDVGAG--KYKLLFDDGYE 40 (53)
T ss_dssp ECTTTCCEEEEEEEEEEETT--EEEEEETTSCE
T ss_pred EeecCCEEEeeEEehhcCCc--eEEEEecCCcE
Confidence 35444444445667788777 89999999763
No 4
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.74 E-value=2.5e+02 Score=22.62 Aligned_cols=26 Identities=15% Similarity=0.323 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHhcCCC
Q 002850 331 LSPFLVIFMVVYLFL-RHAEQFYNHPS 356 (874)
Q Consensus 331 LsPFIviy~lly~FF-rYaee~k~~Ps 356 (874)
.-|||+.|+++-.-- +|.+..++||.
T Consensus 49 ~PPfi~~Y~iy~W~~~~~~~~~rKnPa 75 (75)
T d1ppjg_ 49 APPFVAFYLVYTWGTQEFEKSKRKNPA 75 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCC-
T ss_pred cCHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 558888887765443 33344467874
No 5
>d1khda1 a.46.2.1 (A:12-80) Anthranilate phosphoribosyltransferase (TrpD) {Pectobacterium carotovorum [TaxId: 554]}
Probab=8.20 E-value=1.2e+02 Score=23.15 Aligned_cols=39 Identities=28% Similarity=0.439 Sum_probs=24.8
Q ss_pred chHHHHHHHHHhhccccccccccCCHHH---HHHHHhhhh-------chhhhhhccCC
Q 002850 207 PWATILEKVVQLQSSQQLCVVKDLSAHD---VVMRLMRKE-------NYLIGMLNKGV 254 (874)
Q Consensus 207 sW~eVV~rI~~lQ~~~~lci~k~LdahD---IanRIMRkE-------NYLIAmiNK~I 254 (874)
||+.++++++.=+ +||..+ +...||..+ .+|+||..|+.
T Consensus 1 t~~~il~kl~~g~---------~Ls~ee~~~~~~~i~~g~~~d~qiaafL~al~~kg~ 49 (69)
T d1khda1 1 THQPILEKLFKSQ---------SMTQEESHQLFAAIVRGELEDSQLAAALISMKMRGE 49 (69)
T ss_dssp CCHHHHHHHHTTC---------CCCHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHcCC---------CCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC
Confidence 6889988888532 455443 445555442 67777777765
No 6
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=7.91 E-value=1.5e+02 Score=21.77 Aligned_cols=25 Identities=28% Similarity=0.188 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhcC
Q 002850 405 SILAKFISFVSGGFAAVLIIIAFLE 429 (874)
Q Consensus 405 ~iIAkfVsFvaGS~~AVLiiLsllD 429 (874)
.-..|++..++=+++++|+.|++++
T Consensus 18 ~gFi~~~t~~~i~~i~~liflAi~n 42 (43)
T d1qled_ 18 AGFIKGATWVSILSIAVLVFLALAN 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3466777777888888888888875
No 7
>d1wyha1 g.39.1.3 (A:35-66) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.91 E-value=31 Score=24.16 Aligned_cols=13 Identities=31% Similarity=0.112 Sum_probs=11.4
Q ss_pred hccccccccccCC
Q 002850 456 SRAAVTDELLVLD 468 (874)
Q Consensus 456 sRs~IpdE~~V~d 468 (874)
+||+||+++.+||
T Consensus 11 tkSFip~~~~~yC 23 (32)
T d1wyha1 11 SRSFVPDKGAHYC 23 (32)
T ss_dssp TSCEEEETTEEEE
T ss_pred ccccccCCCcEEE
Confidence 5899999998887
No 8
>d2j5pa1 a.4.5.67 (A:1261-1329) DNA translocase FtsK {Escherichia coli [TaxId: 562]}
Probab=6.34 E-value=83 Score=25.23 Aligned_cols=20 Identities=5% Similarity=0.072 Sum_probs=18.1
Q ss_pred hhhHHhhhcCchhHHHhhcc
Q 002850 379 HLFKHRINSSVVHSSDYLKQ 398 (874)
Q Consensus 379 H~f~~RL~~Sy~~A~~YL~q 398 (874)
.++|+||.-+|--|.+.|+|
T Consensus 25 S~lQR~l~IGYnRAariid~ 44 (69)
T d2j5pa1 25 SGVQRQFRIGYNRAARIIEQ 44 (69)
T ss_dssp HHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHhccchHHHHHHHH
Confidence 47899999999999999886
No 9
>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.84 E-value=62 Score=26.86 Aligned_cols=38 Identities=11% Similarity=0.253 Sum_probs=31.5
Q ss_pred hhcCCCCCCCcccchHHHHHHHHHhhccccccccccCC
Q 002850 194 NSLHVTDSEIQTMPWATILEKVVQLQSSQQLCVVKDLS 231 (874)
Q Consensus 194 ~~L~IsD~eLqTIsW~eVV~rI~~lQ~~~~lci~k~Ld 231 (874)
.+|.|...++.+++-.|+++-|....+...+.|.|+.+
T Consensus 65 ~Il~VNg~~v~~~t~~eav~~l~~~~~~v~L~V~R~~s 102 (103)
T d2h3la1 65 KIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREVS 102 (103)
T ss_dssp EEEEETTEECSSCCHHHHHHHHHHCCSEEEEEEEEEEC
T ss_pred EEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEEECC
Confidence 46778899999999999999999887777777777654
No 10
>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.09 E-value=44 Score=22.73 Aligned_cols=14 Identities=29% Similarity=0.766 Sum_probs=10.9
Q ss_pred ccccccccccCCCC
Q 002850 553 VCSFSTFDFQNHGN 566 (874)
Q Consensus 553 VCSFA~FDf~rhGn 566 (874)
-|+|..||-+++.|
T Consensus 4 kC~~CsFDtkq~Sn 17 (29)
T d1x5wa2 4 KCNYCSFDTKQPSN 17 (29)
T ss_dssp ECSSSSCEESSHHH
T ss_pred ccceecccccCcch
Confidence 49999999887643
Done!