Query 002851
Match_columns 874
No_of_seqs 265 out of 825
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 04:05:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002851.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002851hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nut_A Protein transport prote 100.0 6E-143 2E-147 1299.7 65.1 686 146-870 14-764 (769)
2 1m2o_A SEC23, protein transpor 100.0 4E-142 2E-146 1293.1 64.4 682 147-870 6-763 (768)
3 3eh1_A Protein transport prote 100.0 7E-128 2E-132 1161.3 62.1 645 145-869 35-748 (751)
4 3eh2_A Protein transport prote 100.0 1E-127 3E-132 1163.2 60.1 681 122-869 14-760 (766)
5 3efo_B SEC24 related gene fami 100.0 8E-127 3E-131 1155.8 59.1 682 122-869 18-764 (770)
6 1m2v_B SEC24, protein transpor 100.0 2E-123 8E-128 1136.9 60.5 658 139-869 168-923 (926)
7 1pcx_A Protein transport prote 100.0 4E-122 1E-126 1121.8 62.4 656 140-869 53-807 (810)
8 2yrc_A Protein transport prote 99.6 3.4E-16 1.2E-20 127.1 3.1 50 191-240 5-56 (59)
9 4fx5_A VON willebrand factor t 99.2 1.7E-08 5.8E-13 116.2 34.3 309 276-656 80-408 (464)
10 3ibs_A Conserved hypothetical 98.7 3E-07 1E-11 94.2 18.6 167 274-513 12-212 (218)
11 1ijb_A VON willebrand factor; 98.5 4.5E-06 1.5E-10 84.9 18.4 169 276-513 16-194 (202)
12 4b4t_W RPN10, 26S proteasome r 98.5 9.8E-07 3.3E-11 93.8 12.9 148 275-494 5-163 (268)
13 1v7p_C Integrin alpha-2; snake 98.3 1E-05 3.6E-10 81.9 16.4 170 275-512 8-193 (200)
14 1q0p_A Complement factor B; VO 98.3 1.6E-05 5.3E-10 81.4 17.0 178 274-504 16-207 (223)
15 1shu_X Anthrax toxin receptor 98.3 2.3E-05 7.9E-10 77.6 17.4 158 275-504 8-169 (182)
16 1atz_A VON willebrand factor; 98.3 2.2E-05 7.5E-10 78.6 17.0 158 275-504 7-172 (189)
17 1mf7_A Integrin alpha M; cell 98.2 6.1E-06 2.1E-10 83.0 12.1 172 275-514 7-189 (194)
18 1n3y_A Integrin alpha-X; alpha 98.2 1.4E-05 4.6E-10 80.5 14.4 172 274-513 10-192 (198)
19 2odp_A Complement C2; C3/C5 co 98.2 2E-05 6.9E-10 91.4 17.7 188 274-513 10-209 (509)
20 2b2x_A Integrin alpha-1; compu 98.1 1.8E-05 6.1E-10 81.6 13.2 162 275-504 24-199 (223)
21 4hqf_A Thrombospondin-related 98.1 5.5E-05 1.9E-09 80.9 17.4 164 275-504 23-197 (281)
22 3n2n_F Anthrax toxin receptor 98.1 6.8E-05 2.3E-09 74.3 16.7 160 276-504 10-172 (185)
23 1pt6_A Integrin alpha-1; cell 98.1 3.6E-05 1.2E-09 78.7 15.0 172 275-514 9-196 (213)
24 2x5n_A SPRPN10, 26S proteasome 98.1 2.6E-05 8.8E-10 79.1 12.8 155 275-502 4-173 (192)
25 2x31_A Magnesium-chelatase 60 98.1 5.2E-07 1.8E-11 90.5 -0.1 164 274-502 6-174 (189)
26 4hqo_A Sporozoite surface prot 98.1 4.4E-05 1.5E-09 81.1 15.0 164 275-504 20-194 (266)
27 1rrk_A Complement factor B; BB 98.1 7E-05 2.4E-09 86.5 17.9 176 276-504 4-193 (497)
28 1mjn_A Integrin alpha-L; rossm 98.0 8.9E-05 3E-09 73.7 15.7 161 275-511 4-176 (179)
29 3hrz_D Complement factor B; se 97.9 3.8E-05 1.3E-09 93.2 12.0 182 275-504 245-435 (741)
30 3zqk_A VON willebrand factor; 97.8 0.00021 7E-09 72.3 14.5 152 275-504 23-181 (199)
31 2xgg_A Microneme protein 2; A/ 97.7 0.00038 1.3E-08 69.0 14.5 144 275-485 19-168 (178)
32 1kcq_A Gelsolin, brevin, ADF, 97.7 0.00016 5.6E-09 65.7 10.5 87 726-819 2-91 (104)
33 1jey_B KU80; double-strand DNA 97.5 0.00013 4.5E-09 85.9 7.8 146 275-477 9-169 (565)
34 3k6s_A Integrin alpha-X; cell 97.4 0.00024 8.3E-09 89.7 9.7 163 275-504 132-302 (1095)
35 1svq_A Severin; actin-binding; 97.3 0.00058 2E-08 63.1 8.3 83 726-814 12-98 (114)
36 3fg7_A Villin-1; actin binding 96.2 0.0079 2.7E-07 67.5 8.2 88 724-813 280-371 (398)
37 2fh1_A Gelsolin; calcium, cont 96.2 0.0056 1.9E-07 67.4 6.8 87 725-813 227-318 (344)
38 1j72_A Macrophage capping prot 95.8 0.017 5.8E-07 63.7 8.3 82 725-812 246-338 (347)
39 3fg6_A Adseverin, scinderin; C 95.7 0.0075 2.6E-07 67.1 5.2 87 725-813 268-359 (371)
40 1j72_A Macrophage capping prot 95.4 0.048 1.6E-06 60.0 10.2 87 726-819 135-224 (347)
41 1jey_A KU70; double-strand DNA 95.2 0.29 9.8E-06 58.0 16.8 159 276-478 38-208 (609)
42 1d0n_A Horse plasma gelsolin; 94.8 0.033 1.1E-06 67.4 7.2 89 723-813 610-703 (729)
43 1d0n_A Horse plasma gelsolin; 94.2 0.12 4E-06 62.5 9.9 88 725-819 132-222 (729)
44 2fh1_A Gelsolin; calcium, cont 93.8 0.1 3.5E-06 57.3 7.9 78 726-815 124-205 (344)
45 3fg6_A Adseverin, scinderin; C 93.3 0.19 6.3E-06 55.9 8.9 78 726-815 165-247 (371)
46 2ww8_A RRGA, cell WALL surface 93.2 0.14 4.8E-06 63.1 8.5 45 275-319 226-280 (893)
47 3fcs_B Integrin beta-3; beta p 92.1 1.2 4.2E-05 53.2 14.1 232 276-536 114-370 (690)
48 3rag_A Uncharacterized protein 91.8 0.12 4.3E-06 53.5 4.5 45 273-317 134-182 (242)
49 1yvr_A RO autoantigen, 60-kDa 90.2 0.6 2E-05 54.3 8.9 101 274-432 369-475 (538)
50 3t3p_B Integrin beta-3; integr 88.6 37 0.0013 38.4 22.4 230 276-535 114-369 (472)
51 3fg7_A Villin-1; actin binding 87.0 0.12 4.1E-06 57.9 0.0 79 726-815 178-260 (398)
52 3v4v_B Integrin beta-7; cell a 85.1 7.9 0.00027 44.1 13.5 187 276-498 135-351 (503)
53 3vi3_B Integrin beta-1; beta p 79.9 84 0.0029 35.3 21.1 189 276-494 125-334 (454)
54 2nvo_A RO sixty-related protei 79.1 4.7 0.00016 46.7 9.2 32 386-432 440-471 (535)
55 3rag_A Uncharacterized protein 74.1 5.8 0.0002 41.0 7.1 63 418-501 10-76 (242)
56 2j9u_B VPS36, vacuolar protein 71.1 1.1 3.6E-05 37.6 0.6 20 215-234 15-34 (76)
57 1gh9_A 8.3 kDa protein (gene M 68.1 1.6 5.4E-05 36.5 1.0 32 193-230 2-33 (71)
58 2gmg_A Hypothetical protein PF 63.8 2 7E-05 38.4 1.0 37 193-234 65-101 (105)
59 2iue_A Pactolus I-domain; memb 58.6 9.5 0.00032 38.7 5.0 42 276-317 6-51 (212)
60 1vq8_Z 50S ribosomal protein L 57.9 6.1 0.00021 34.0 2.9 31 194-228 26-56 (83)
61 2a20_A Regulating synaptic mem 56.0 2.5 8.6E-05 33.6 0.1 28 195-226 33-60 (62)
62 1pft_A TFIIB, PFTFIIBN; N-term 50.3 19 0.00063 27.5 4.3 29 195-226 5-33 (50)
63 4gat_A Nitrogen regulatory pro 38.9 12 0.00041 30.7 1.6 33 193-226 7-39 (66)
64 1x0t_A Ribonuclease P protein 37.6 14 0.00049 33.9 2.1 35 196-230 66-107 (120)
65 2csz_A Synaptotagmin-like prot 34.5 13 0.00045 31.3 1.2 31 196-226 43-73 (76)
66 2avu_E Flagellar transcription 34.4 8.7 0.0003 38.2 0.1 28 194-224 133-161 (192)
67 1yuz_A Nigerythrin; rubrythrin 32.9 11 0.00039 37.8 0.7 25 195-226 171-195 (202)
68 6rxn_A Rubredoxin; electron tr 32.6 7.2 0.00025 29.6 -0.6 9 217-225 30-38 (46)
69 2vut_I AREA, nitrogen regulato 32.3 13 0.00045 27.8 0.7 31 195-226 1-31 (43)
70 3k6s_B Integrin beta-2; cell r 31.9 36 0.0012 40.5 4.9 41 276-316 107-151 (687)
71 1s24_A Rubredoxin 2; electron 31.3 6.9 0.00024 33.9 -1.0 32 194-225 34-76 (87)
72 2k3r_A Ribonuclease P protein 27.6 22 0.00075 32.8 1.6 35 196-230 61-102 (123)
73 3j21_g 50S ribosomal protein L 26.3 17 0.00059 28.2 0.5 28 193-228 12-39 (51)
74 1yk4_A Rubredoxin, RD; electro 26.1 11 0.00037 29.4 -0.7 10 216-225 34-43 (52)
75 2zet_C Melanophilin; complex, 24.7 16 0.00053 35.1 0.0 33 196-228 86-119 (153)
76 1zbd_B Rabphilin-3A; G protein 23.7 27 0.00092 32.7 1.4 33 196-228 73-109 (134)
77 1e8j_A Rubredoxin; iron-sulfur 23.3 15 0.0005 28.7 -0.4 10 217-226 3-12 (52)
78 4rxn_A Rubredoxin; electron tr 21.5 16 0.00053 28.8 -0.6 9 217-225 36-44 (54)
79 1dx8_A Rubredoxin; electron tr 21.3 16 0.00055 30.3 -0.6 10 216-225 39-48 (70)
80 2lk0_A RNA-binding protein 5; 21.3 27 0.00092 24.2 0.7 13 216-228 4-16 (32)
81 1gnf_A Transcription factor GA 20.8 16 0.00053 27.8 -0.7 32 194-226 3-34 (46)
82 1w7p_D VPS36P, YLR417W; ESCRT- 20.8 21 0.00071 41.4 0.0 21 214-234 114-134 (566)
83 2v3b_B Rubredoxin 2, rubredoxi 20.7 14 0.00049 29.1 -0.9 10 217-226 3-12 (55)
84 2kdx_A HYPA, hydrogenase/ureas 20.2 27 0.00092 31.8 0.6 28 195-228 73-101 (119)
85 1nj3_A NPL4; NZF domain, rubre 20.1 35 0.0012 23.2 1.1 16 215-230 4-19 (31)
No 1
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=100.00 E-value=5.8e-143 Score=1299.66 Aligned_cols=686 Identities=25% Similarity=0.378 Sum_probs=598.2
Q ss_pred CCCCCCeeeeecCccCCCHhhhhcCCCceEEEeccCCCCCCCCccccCCCccCCC--CCcccccceEEEcCCceEEEccC
Q 002851 146 PVGESSCVLFSAHKVLKKKKQANVPSLGFGALVSPGKEVSPSLQIIQRDPHRCHN--CGAFANIYCKILLGSGQWQCVIC 223 (874)
Q Consensus 146 ~~~~~~~vR~T~n~~P~t~~~~~~~~lPlg~l~tPl~~~~~~~p~v~~~p~RC~~--C~AylNP~~~~~~~~~~W~C~fC 223 (874)
.||+++|||+|||+||.|++++++++|||||+|+||++.+ ++|+++++|+||++ |+|||||||+|+.++++|+||||
T Consensus 14 ~n~~~~~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~~-~~p~v~~~pvRC~~~~CrayiNPf~~~~~~~~~W~C~~C 92 (769)
T 2nut_A 14 QNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERP-DLPPIQYEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFC 92 (769)
T ss_dssp HHHHHHSEEESBSSBCSSHHHHTTCSSCCEEEECTTCCCS-CCCCBCSCCCBCSSTTCCCBCCTTSEEETTTTEEECSSS
T ss_pred ccCCCCcccceeccCCCChHHHhcccCCeEEEEeeCCCCC-CCCcCCCCCCcCCCCCCCeEECCceEEeCCCCEEEccCC
Confidence 5789999999999999999999999999999999999864 48889999999999 99999999999999999999999
Q ss_pred CCccCCCccccCCCccccCCCCCC--CCCceEEEecCCCCCCCCCCCCCCCCCcEEEEEECCCChhHHHHHHHHHHHhhh
Q 002851 224 RNLNGSEGEYVAPSKEELRNFPEL--SSPMVDYVQTGNNRSSYVPVSDSRMSAPIILVIDECLDEPHLQHLQSSLHAFVE 301 (874)
Q Consensus 224 ~~~N~~p~~Y~~~~~~d~~~~PEL--~~~tvEy~~p~~~r~~~~p~~~~~~~p~~vFvID~s~~~~~l~~l~~sL~~~L~ 301 (874)
+++|++|++|+..+. .+.+||| +++||||+++.+| ..+|.||||||+|.++++++++|++|+++|+
T Consensus 93 ~~~N~~P~~Y~~~~~--~~~~pEL~p~~~tvEy~~~~~~----------p~pp~~vFvIDvS~~a~~l~~l~~si~~~L~ 160 (769)
T 2nut_A 93 YQRNQFPPSYAGISE--LNQPAELLPQFSSIEYVVLRGP----------QMPLIFLYVVDTCMEDEDLQALKESMQMSLS 160 (769)
T ss_dssp CCEEECCGGGTTCBT--TBCCGGGSGGGSSEEEEECSSC----------CCCCEEEEEEECCSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCChHHccCCc--ccCChhhcCCCCcEEEEccCCC----------CCCCEEEEEEECCccHHHHHHHHHHHHHHHH
Confidence 999999999984432 3457899 8999999999875 2557789999999999999999999999999
Q ss_pred cCCCCcEEEEEEECceEEEEecCCCCcceeccccCCCCCCHHHHHHHhh-------------------cCCccccchhhh
Q 002851 302 SIPPTARIGIILYGRTVSVYDFSEDSIASSDVLAGDKLPTEDSLKALLY-------------------GTGVYLSPMHAS 362 (874)
Q Consensus 302 ~Lp~~a~VGlITFd~~V~vy~l~~~~~~~~~V~~g~~~~~~~~l~~~l~-------------------~~~~fL~pl~e~ 362 (874)
.||++++|||||||++||||+++.+.+.+++||+|+|+++.+++++|++ ..++||+|++||
T Consensus 161 ~Lp~~~~VGlITf~~~v~~y~l~~~~~~~~~vf~G~k~~~~~q~~~ml~v~d~~~~~~~~~~~~~f~~p~~~~lv~~~e~ 240 (769)
T 2nut_A 161 LLPPTALVGLITFGRMVQVHELGCEGISKSYVFRGTKDLSAKQLQEMLGLSKVPVTQATRGPQVQQPPPSNRFLQPVQKI 240 (769)
T ss_dssp TSCTTCEEEEEEESSEEEEEESSCCSSCEEEEEETTSCCCSHHHHHHHC-------------------CCCSSSEEHHHH
T ss_pred hCCCCceEEEEEeCCEEEEEeCCCCCCccceeecCCccccHHHHHHHhCCCCcccccccccccccCCCcccceeeeHHHH
Confidence 9999999999999999999999998899999999999999888877652 126799999999
Q ss_pred HHHHHHHHHhhcCCccccccCCCC-CchHHHHHHHHHHhcCCCccccccccccCCCCcEEEEEecCCCCCCCCcccCCCC
Q 002851 363 KQVAHDIFSSLRPYKLNITEASRD-RCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRIIVCAGGPNTYGPGSVPHSFS 441 (874)
Q Consensus 363 ~~~i~~lLe~L~~~~~~~~~~~r~-rc~G~AL~vA~~lL~~~~~~~~~~~~~~~~~ggrIi~F~sGppT~GpG~l~~~~~ 441 (874)
++.|+++|++|+.+.|.....+++ ||+|+||++|..+|+.+++ +.||||++|++|+||.|||+|+.+++
T Consensus 241 ~~~i~~lLe~L~~~~~~~~~~~~~~~a~G~Al~~A~~lL~~~~~----------~~GGrI~~F~sg~pt~GpG~l~~r~~ 310 (769)
T 2nut_A 241 DMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFP----------NTGARIMMFIGGPATQGPGMVVGDEL 310 (769)
T ss_dssp HHHHHHHHHHCCCCSSCCCTTBCCCCCHHHHHHHHHHHHHHHSC----------SSCCEEEEEESSCCCSSSSCCSCSBT
T ss_pred HHHHHHHHHhcccccccccCCCCCccchHHHHHHHHHHHhhccc----------CCCcEEEEEeCCCCCCCCCCCcCccc
Confidence 999999999999977766556666 9999999999999985432 36899999999999999999998765
Q ss_pred CCC-----------chhhhHhHHHHHHHHHHHHhhcCeEEEEeeecCCCCCcccchhhhcccccEEEEcCChhh-HHHHH
Q 002851 442 HPN-----------YLHMEKMALKWMELLGRKAHQHNAVIDILCAGNCPVRVPVLQPLAKASGGVLVLHDDFGE-AFGVN 509 (874)
Q Consensus 442 ~~~-----------~~~~ek~a~~fY~~La~~~~~~gisVDiF~~s~d~vglaem~~l~~~TGG~v~~~~~F~~-~f~~d 509 (874)
++. .+++ +++.+||++||++|+++||+||+|+++.+|+|+++|+.|++.|||.+++|++|+. .|.++
T Consensus 311 ~~~~rs~~d~~ke~~~~~-~~a~~fY~~la~~~~~~gi~VDlF~~~~~~vdla~l~~l~~~TGG~~~~~~~F~~~~~~~~ 389 (769)
T 2nut_A 311 KTPIRSWHDIDKDNAKYV-KKGTKHFEALANRAATTGHVIDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQT 389 (769)
T ss_dssp TSCCCCHHHHHTTCCTTH-HHHHHHHHHHHHHHHHHTCEEEEEEECSSCCCHHHHTHHHHHSSCCEEEESCSSSHHHHHH
T ss_pred ccccccccccccchhhhc-cchHHHHHHHHHHHHHCCeEEEEEeccCCccChHHHHHHhhcCCceEEEcCCCchhhHHHH
Confidence 432 3334 7899999999999999999999999999999999999999999999999999975 69999
Q ss_pred HHHHHhh------ccCcceEEEEEeCCCeeEEEeecCCcccccccccc----cccCccccccccCCCCceEEEEEEEecc
Q 002851 510 LQRASTR------AAGSHGFLEIRCSDDILVTQIVGPGEEAHIDTHET----FKNDAALSIQMPSVEETQSFAVSMENKR 579 (874)
Q Consensus 510 l~r~~~~------~~g~~a~l~VR~S~glkV~~~~G~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~~s~~~~~~~~~ 579 (874)
|+|.|++ .+||+|+||||||+||+|++++||+.+.++++++. ++.++++.|++++++++++|+|+|++++
T Consensus 390 l~~~~~~~~~~~l~~gf~a~mrVr~S~gl~v~~~~G~~~~~~~~~~~vsd~~~g~~~t~~~~l~~~~~d~s~~v~f~~~~ 469 (769)
T 2nut_A 390 FQRVFTKDMHGQFKMGFGGTLEIKTSREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFEVVN 469 (769)
T ss_dssp HHHTTCBCTTSCBSCEEEEEEEEEECTTEEEEEEESSCEECCCCCTTBCSSCCSBCSCSEEEEEEECTTCCEEEEEEEC-
T ss_pred HHHHHhhhcccccceEEEEEEEEEecCCeEEEeeeccccccccccCccccceeccCCCceEEeecCCCCCEEEEEEEecC
Confidence 9999998 68999999999999999999999999877665432 3345567899999999999999999998
Q ss_pred CC-----CCCceEEEEEEEEEecCCCEEEEEEeeeeccccch---HHHHhhcCHHHHHHHHHHHHHHHhhccCCHHHHHH
Q 002851 580 DI-----ESNHVFFQFAIRYSNVYQADISRVVTVRLPTVDSV---SAYLSSFQDEVAAVLIAKRTLLRAKIFSEAIDMRT 651 (874)
Q Consensus 580 ~~-----~~~~~~IQfal~Yt~~~G~rriRV~T~~l~vt~~~---~~i~~s~D~ea~~~l~ak~av~~~~~~~~~~d~r~ 651 (874)
.. +...+|||||++||+.+|+|||||||++++|+++. .+++++|||||++++|||+|++++++ ++..|+|+
T Consensus 470 ~~~~~l~~~~~~~~Q~a~lYt~~~G~rRiRV~T~~~~~t~~~~~~~~v~~~~Dqea~~~llar~a~~~~~~-~~~~d~~~ 548 (769)
T 2nut_A 470 QHNAPIPQGGRGAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAILMARLAIYRAET-EEGPDVLR 548 (769)
T ss_dssp ---------CCEEEEEEEEEEETTSCEEEEEEEEEECBCCGGGHHHHHHHTBCHHHHHHHHHHHHHHHHTT-C---CHHH
T ss_pred ccccccCCCCeEEEEEEEEEECCCCCEEEEEEeecccccCCcccHHHHHHhcCHHHHHHHHHHHHHHHhcc-CCHHHHHH
Confidence 63 35789999999999999999999999999999987 59999999999999999999999998 47899999
Q ss_pred HHHHHHHHHHHHhcccCCCC-CccccchhhhHHHHHHHHhccCcCCCCCCCCchHHHHHHHHHhccCHHHHHHhhcccee
Q 002851 652 MIDERVKDIALKFGSQVPKS-KLYRFPKELSALSELLFHLRRSPLLGNIIGHDDERSVLRNLFLNASFDLSLRMVAPRCL 730 (874)
Q Consensus 652 ~Ld~~li~ll~~y~~~~~~~-~~l~Lp~~l~llP~~~~~L~Rs~~l~~~~~spDera~~~~~l~~~~v~~sl~miyP~L~ 730 (874)
|||++|+++|++|+.|.+.. .+|+||++|++||+||||||||++|++++++||||+|+|++++++++.+++.||||+||
T Consensus 549 ~ld~~li~l~~~~~~Yrk~~~~sl~lp~~lkllP~~~~~L~ks~~l~~~~~spDer~~~~~~l~~~~~~~~~~~iyP~L~ 628 (769)
T 2nut_A 549 WLDRQLIRLCQKFGEYHKDDPSSFRFSETFSLYPQFMFHLRRSSFLQVFNNSPDESSYYRHHFMRQDLTQSLIMIQPILY 628 (769)
T ss_dssp HHHHHHHHHHHHHCBCCTTCGGGCBCCTTTTTHHHHHHHHHHSTTTCCTTSCHHHHHHHHHHHTTCCHHHHHHHHSCEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcccccccHHHHHHHHHHHHHhcccccCCCCCCccHHHHHHHHHHcCCHHHHHHhhcCEEE
Confidence 99999999999999886543 35999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCcccCCcccccccCCcEEEEeCCcEEEEEeCCcccc--------cccc--cHHHHHHHHHHHHHHHhcCCCCcE
Q 002851 731 MYREGGTFEELPAYDLAMQSDKAVVLDHGTDVFIWLGAELAA--------DEGR--SAAALAACRTLAEELSEFRFPAPR 800 (874)
Q Consensus 731 ~~~~~~~~~~lP~~~~sl~~d~iyLLD~g~~i~Iw~G~~v~~--------~~~~--~~~~l~~~~~~~~~l~~~R~p~Pr 800 (874)
+||+++...+++++..+|.+|+|||||+|++|+||+|+++++ ++++ |++++++|+++|++|+++|||+||
T Consensus 629 ~~~~~~~P~~v~ls~~~l~~~gi~LLD~g~~i~i~~G~~v~~w~~~~~~~~p~~~~~~~~l~~p~~~a~~i~~~R~p~Pr 708 (769)
T 2nut_A 629 AYSFSGPPEPVLLDSSSILADRILLMDTFFQILIYHGETIAQWRKSGYQDMPEYENFRHLLQAPVDDAQEILHSRFPMPR 708 (769)
T ss_dssp EECSSSSCEECCSSGGGCCTTCEEEEECSSEEEEEECHHHHHHHHHTTTTSGGGHHHHHHHHHHHHHHHHHHHHSSSCCE
T ss_pred eccCCCCCCceeCCHHHccCCCEEEEECCCEEEEEECCcchHHHhCCCCCCchhhhHHHHHHhHHHHHHHHHhcCCCCCe
Confidence 999887655667778899999999999999999999999875 3444 689999999999999999999999
Q ss_pred EEEEecCCchHHHHHHhhcCCCCCCcccccccccccccCChHHHhhcccccccCCCchHHHHHHhcccCC
Q 002851 801 ILAFKEGSSQARYFVTRLIPAHKDPPYEQEARFPQLRSLTPEERIKLKSSFLFFDDPSFCEWMRSLKVVP 870 (874)
Q Consensus 801 ~i~~~qg~sqaRfl~srL~ps~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~i~TdD~Sl~~f~~~L~~~~ 870 (874)
+++|+||+||||||++||||+++|+. .+|+ + + .++++|+|||+||++||+|||+.+
T Consensus 709 ~i~~~~g~sqaRfl~sklnps~~~~~----~~~~-----~--~---~~~~~~~tddvsl~~f~~~l~~~~ 764 (769)
T 2nut_A 709 YIDTEHGGSQARFLLSKVNPSQTHNN----MYAW-----G--Q---ESGAPILTDDVSLQVFMDHLKKLA 764 (769)
T ss_dssp EEEEETTCSTTHHHHHHCC------------------------------------CCSHHHHHHHHHHHH
T ss_pred EEEEcCCCcHHHHHHHhcCCcccccC----CCcC-----C--C---cCCccccccccCHHHHHHHHHHHh
Confidence 99999999999999999999999852 1122 0 0 136789999999999999999763
No 2
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=100.00 E-value=4.5e-142 Score=1293.13 Aligned_cols=682 Identities=24% Similarity=0.382 Sum_probs=606.5
Q ss_pred CCCCCeeeeecCccCCCHhhhhcCCCceEEEeccCCCCCCCCccccCCCccCCC--CCcccccceEEEcCCceEEEccCC
Q 002851 147 VGESSCVLFSAHKVLKKKKQANVPSLGFGALVSPGKEVSPSLQIIQRDPHRCHN--CGAFANIYCKILLGSGQWQCVICR 224 (874)
Q Consensus 147 ~~~~~~vR~T~n~~P~t~~~~~~~~lPlg~l~tPl~~~~~~~p~v~~~p~RC~~--C~AylNP~~~~~~~~~~W~C~fC~ 224 (874)
+|+++|||+|||+||.|++++++++|||||+|+||++.. ++|+++++|+||++ |+|||||||+|+.++++|+||||+
T Consensus 6 ~~~~~~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~~-~~p~v~~~pvRC~~~~CrayiNPf~~~~~~~~~W~C~~C~ 84 (768)
T 1m2o_A 6 NEDINGVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEYD-ELNVAPYNPVVCSGPHCKSILNPYCVIDPRNSSWSCPICN 84 (768)
T ss_dssp HHHHHSEEESBSEEESSHHHHHHTCSCSEEEECTTCCCT-TCCEECSCCCBCCSTTTCCBCCTTSCEETTTTEECCTTTC
T ss_pred ccCcCceEeeeccCCCCHHHHhcCCCCeEEEEEeCCCCC-CCCcCCCCCCccCCCCCCeEECCceEEeCCCCEEEcccCC
Confidence 688999999999999999999999999999999999753 57889999999999 999999999999999999999999
Q ss_pred CccCCCccccCCCccccCCCCCCCCCceEEEecCCCCCCCCCCCCCCCCCcEEEEEECCCChhHHHHHHHHHHHhhhcCC
Q 002851 225 NLNGSEGEYVAPSKEELRNFPELSSPMVDYVQTGNNRSSYVPVSDSRMSAPIILVIDECLDEPHLQHLQSSLHAFVESIP 304 (874)
Q Consensus 225 ~~N~~p~~Y~~~~~~d~~~~PEL~~~tvEy~~p~~~r~~~~p~~~~~~~p~~vFvID~s~~~~~l~~l~~sL~~~L~~Lp 304 (874)
++|++|++|+..+. .+.+|||+++||||+++.. + ..+|.||||||+|.++++++++|++|+++|+.||
T Consensus 85 ~~N~~P~~y~~~~~--~~~~pEL~~~tvEy~~p~~--~--------~~pp~~vFvIDvs~~~~~l~~l~~sl~~~L~~Lp 152 (768)
T 1m2o_A 85 SRNHLPPQYTNLSQ--ENMPLELQSTTIEYITNKP--V--------TVPPIFFFVVDLTSETENLDSLKESIITSLSLLP 152 (768)
T ss_dssp CCCBCCGGGCC-----CCCCGGGTCSEEEEECSCC--C--------CSCCEEEEEEECCSCHHHHHHHHHHHHHHHHTSC
T ss_pred CCCCCChHHccCCc--ccCChhhccCCEEEECCCC--C--------CCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhCC
Confidence 99999999984332 2457899999999999963 2 2567789999999999999999999999999999
Q ss_pred CCcEEEEEEECceEEEEecCCCCcceeccccCCCCCCHHHHHHHh-hc-----------------------CCccccchh
Q 002851 305 PTARIGIILYGRTVSVYDFSEDSIASSDVLAGDKLPTEDSLKALL-YG-----------------------TGVYLSPMH 360 (874)
Q Consensus 305 ~~a~VGlITFd~~V~vy~l~~~~~~~~~V~~g~~~~~~~~l~~~l-~~-----------------------~~~fL~pl~ 360 (874)
++++|||||||++||||+++.+.+.+++||+|+++++.+++++++ +. .++||+|++
T Consensus 153 ~~~~VGlITf~~~V~~y~l~~~~~~~~~V~~g~k~~~~~q~~~~l~~l~~~~~~~~~~~~~~~~f~p~~~~~~~~lv~l~ 232 (768)
T 1m2o_A 153 PNALIGLITYGNVVQLHDLSSETIDRCNVFRGDREYQLEALTEMLTGQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPLE 232 (768)
T ss_dssp TTCEEEEEEESSEEEECCCSSSSSEEEEEEETTSCCCHHHHHHHHHSCCCC---------------CCSSSGGGGSEEHH
T ss_pred CCCEEEEEEECCEEEEEECCCCCCcceeeecCCccccHHHHHHHHhhccccccCCccccccccccccccCCccceeeeHH
Confidence 999999999999999999998888999999999999999998887 20 357999999
Q ss_pred hhHHHHHHHHHhhcCCccccccCCCC-CchHHHHHHHHHHhcCCCccccccccccCCCCcEEEEEecCCCCCCCCcccCC
Q 002851 361 ASKQVAHDIFSSLRPYKLNITEASRD-RCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRIIVCAGGPNTYGPGSVPHS 439 (874)
Q Consensus 361 e~~~~i~~lLe~L~~~~~~~~~~~r~-rc~G~AL~vA~~lL~~~~~~~~~~~~~~~~~ggrIi~F~sGppT~GpG~l~~~ 439 (874)
||++.|+++|++|+++.|....++++ ||+|+||++|..+|+.+++ +.||||++|++|+||+|||+|+.+
T Consensus 233 e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~----------~~GGrI~~F~sg~pt~GpG~l~~r 302 (768)
T 1m2o_A 233 QVEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGCYK----------NIPARIILFASGPGTVAPGLIVNS 302 (768)
T ss_dssp HHHHHHHHHHHTCCCSCSCCCTTBCCCCCHHHHHHHHHHHHHHHCT----------TSCCEEEEEESSCCCSSSSCCSCS
T ss_pred HHHHHHHHHHHhccccccccCCCCCCcccHHHHHHHHHHHHhhccC----------CCCcEEEEEeCCCCCCCCcccccc
Confidence 99999999999999988766666666 9999999999999985432 368999999999999999999998
Q ss_pred CCCCC-----------chhhhHhHHHHHHHHHHHHhhcCeEEEEeeecCCCCCcccchhhhcccccEEEEcCChhh-HHH
Q 002851 440 FSHPN-----------YLHMEKMALKWMELLGRKAHQHNAVIDILCAGNCPVRVPVLQPLAKASGGVLVLHDDFGE-AFG 507 (874)
Q Consensus 440 ~~~~~-----------~~~~ek~a~~fY~~La~~~~~~gisVDiF~~s~d~vglaem~~l~~~TGG~v~~~~~F~~-~f~ 507 (874)
++++. .+++ +++.+||++||++|+++||+||+|+++.+|+|++||+.|++.|||.+++|++|+. .|+
T Consensus 303 ~~~~~~rs~~d~~k~~~~~~-~~a~~fY~~la~~~~~~gi~VDlF~~~~~~~dla~l~~l~~~TGG~v~~y~~f~~~~~~ 381 (768)
T 1m2o_A 303 ELKDPLRSHHDIDSDHAQHY-KKACKFYNQIAQRVAANGHTVDIFAGCYDQIGMSEMKQLTDSTGGVLLLTDAFSTAIFK 381 (768)
T ss_dssp BTTSCCCCHHHHHHTCCTTH-HHHHHHHHHHHHHHHHHTCEEEEEEECSSCCSHHHHHHHHHHHTCCEEEESCTTSHHHH
T ss_pred ccccccccccccccchhhhc-CchHHHHHHHHHHHHHCCeEEEEEEccCCccChHHHhhHhhcCCceEEEcCCCchHHHH
Confidence 76542 2333 6899999999999999999999999999999999999999999999999999975 699
Q ss_pred HHHHHHHhh------ccCcceEEEEEeCCCeeEEEeecCCccccc-cccc----ccccCccccccccCCCCceEEEEEEE
Q 002851 508 VNLQRASTR------AAGSHGFLEIRCSDDILVTQIVGPGEEAHI-DTHE----TFKNDAALSIQMPSVEETQSFAVSME 576 (874)
Q Consensus 508 ~dl~r~~~~------~~g~~a~l~VR~S~glkV~~~~G~~~~~~~-~~~~----~~~~~~~~~~~~~~v~~~~s~~~~~~ 576 (874)
++|+|.|++ ++||+|+||||||+||+|++++||+.+.++ |+++ .++.++++.|++++++++++|+|+|+
T Consensus 382 ~~l~r~l~~~~~~~~~~gf~a~mrVr~S~gl~v~~~~G~~~~~~~~~~~~vsd~~ig~~~t~~~~l~~~~~d~t~~v~f~ 461 (768)
T 1m2o_A 382 QSYLRLFAKDEEGYLKMAFNGNMAVKTSKDLKVQGLIGHASAVKKTDANNISESEIGIGATSTWKMASLSPYHSYAIFFE 461 (768)
T ss_dssp HHHHHTTCBCTTSSBSCEEEEEEEEEECTTEEEEEEESSCEECCSCCCSCBCSSCSSBCSCSEEEEEEECTTCCEEEEEE
T ss_pred HHHHHHHhhccccccceEEEEEEEEEecCCceEEEeecCccccccccccccCcceeccCCCceEEeecCCCCCEEEEEEE
Confidence 999999998 689999999999999999999999987654 4322 13344567899999999999999999
Q ss_pred eccCC--------------CCCceEEEEEEEEEecCCCEEEEEEeeeeccccc-hHHHHhhcCHHHHHHHHHHHHHHHhh
Q 002851 577 NKRDI--------------ESNHVFFQFAIRYSNVYQADISRVVTVRLPTVDS-VSAYLSSFQDEVAAVLIAKRTLLRAK 641 (874)
Q Consensus 577 ~~~~~--------------~~~~~~IQfal~Yt~~~G~rriRV~T~~l~vt~~-~~~i~~s~D~ea~~~l~ak~av~~~~ 641 (874)
+++.. +...+|||||++||+.+|+|||||||++++|+++ +.+++++|||||++++|||+|+++++
T Consensus 462 ~~~~~~~~~~~~~~~l~~~~~~~~~iQ~a~lYt~~~G~rriRV~T~~~~~t~~~~~~v~~~~Dqea~~~llar~av~~~~ 541 (768)
T 1m2o_A 462 IANTAANSNPMMSAPGSADRPHLAYTQFITTYQHSSGTNRIRVTTVANQLLPFGTPAIAASFDQEAAAVLMARIAVHKAE 541 (768)
T ss_dssp ECCC-----------------CEEEEEEEEEEEETTTEEEEEEEEEEEEEECTTCHHHHHTBCHHHHHHHHHHHHHHHTT
T ss_pred eccccccccccccccccccCCCcEEEEEEEEEEcCCCCEEEEEEeecccccCccHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 99875 3478999999999999999999999999999986 89999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHhcccCCCC-CccccchhhhHHHHHHHHhccCcCCCCCCCCchHHHHHHHHHhccCHHH
Q 002851 642 IFSEAIDMRTMIDERVKDIALKFGSQVPKS-KLYRFPKELSALSELLFHLRRSPLLGNIIGHDDERSVLRNLFLNASFDL 720 (874)
Q Consensus 642 ~~~~~~d~r~~Ld~~li~ll~~y~~~~~~~-~~l~Lp~~l~llP~~~~~L~Rs~~l~~~~~spDera~~~~~l~~~~v~~ 720 (874)
+ +++.|+|+|||++|+++|++|+.|.+.. .+|+||++|++||+||||||||++|++++++||||+|+|++++++++.+
T Consensus 542 ~-~~~~d~r~~l~~~li~l~~~~~~Yrk~~~~~l~lp~~lk~lP~~~~~L~ks~~l~~~~~spDer~~~~~~l~~~~~~~ 620 (768)
T 1m2o_A 542 T-DDGADVIRWLDRTLIKLCQKYADYNKDDPQSFRLAPNFSLYPQFTYYLRRSQFLSVFNNSPDETAFYRHIFTREDTTN 620 (768)
T ss_dssp S-SCHHHHHHHHHHHHHHHHHHHSBCCTTCGGGCBCCTTTTHHHHHHHHHHHSTTTCCTTSCHHHHHHHHHHHTTSCHHH
T ss_pred c-CCHHHHHHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHhcccccCCCCCChhHHHHHHHHHHcCCHHH
Confidence 8 5899999999999999999999886543 3599999999999999999999999999999999999999999999999
Q ss_pred HHHhhccceeeeccCCCcccCCcccccccCCcEEEEeCCcEEEEEeCCcccc--------cccc--cHHHHHHHHHHHHH
Q 002851 721 SLRMVAPRCLMYREGGTFEELPAYDLAMQSDKAVVLDHGTDVFIWLGAELAA--------DEGR--SAAALAACRTLAEE 790 (874)
Q Consensus 721 sl~miyP~L~~~~~~~~~~~lP~~~~sl~~d~iyLLD~g~~i~Iw~G~~v~~--------~~~~--~~~~l~~~~~~~~~ 790 (874)
++.||||+||+||.++.+.+++++..+|.+|+|||||+|++|+||+|+++++ ++++ +++++++|+.+|++
T Consensus 621 ~l~~iyP~L~~~~~~~~P~~v~Ls~~~l~~~gi~LLD~g~~i~i~~G~~v~~~~~~~~~~~~~~~~~~~ll~~p~~~a~~ 700 (768)
T 1m2o_A 621 SLIMIQPTLTSFSMEDDPQPVLLDSISVKPNTILLLDTFFFILIYHGEQIAQWRKAGYQDDPQYADFKALLEEPKLEAAE 700 (768)
T ss_dssp HHHHHSCEEEEECSSSCCEECCSBGGGCCTTCEEEEECSSEEEEEECHHHHHHHHHTGGGSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhCCeEEEecCCCCCcceeCcHHHcCCCCEEEEECCCEEEEEECCcchHHHhcccCCCchhhhHHHHhhhhHHHHHH
Confidence 9999999999999887655667778899999999999999999999999875 2333 57889999999999
Q ss_pred HHhcCCCCcEEEEEecCCchHHHHHHhhcCCCCCCcccccccccccccCChHHHhhcccccccCCCchHHHHHHhcccCC
Q 002851 791 LSEFRFPAPRILAFKEGSSQARYFVTRLIPAHKDPPYEQEARFPQLRSLTPEERIKLKSSFLFFDDPSFCEWMRSLKVVP 870 (874)
Q Consensus 791 l~~~R~p~Pr~i~~~qg~sqaRfl~srL~ps~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~i~TdD~Sl~~f~~~L~~~~ 870 (874)
|+++|||+||+++|+||+||||||++||||+++|+.. +++ ++.+|+|||+||++||+|||+.+
T Consensus 701 i~~~R~p~Pr~i~~~~~~sqarfl~s~L~p~~~~~~~----~~~-------------~~~~i~tdd~S~~~f~~~L~k~~ 763 (768)
T 1m2o_A 701 LLVDRFPLPRFIDTEAGGSQARFLLSKLNPSDNYQDM----ARG-------------GSTIVLTDDVSLQNFMTHLQQVA 763 (768)
T ss_dssp HHHTCSSCCEEEEEETTCGGGHHHHTTSBCC----------------------------CCCCCCSCCHHHHHHHHHHHH
T ss_pred HHhcCCCCceEEEECCCCcHHHHHHHHcCCCcccccc----ccC-------------CccccccCCcCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999987421 111 36679999999999999999753
No 3
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=100.00 E-value=6.5e-128 Score=1161.28 Aligned_cols=645 Identities=19% Similarity=0.297 Sum_probs=564.4
Q ss_pred CCCCCCCeeeeecCccCCCHhhhhcCCCceEEEeccCCCCCCCCccccC-CCccCCCCCcccccceEEEcCCceEEEccC
Q 002851 145 MPVGESSCVLFSAHKVLKKKKQANVPSLGFGALVSPGKEVSPSLQIIQR-DPHRCHNCGAFANIYCKILLGSGQWQCVIC 223 (874)
Q Consensus 145 ~~~~~~~~vR~T~n~~P~t~~~~~~~~lPlg~l~tPl~~~~~~~p~v~~-~p~RC~~C~AylNP~~~~~~~~~~W~C~fC 223 (874)
..||+|+|||+|||+||.|++++++++|||||+||||++..+ +|++++ +|+||++|||||||||+|. ++++|+||||
T Consensus 35 ~~n~~p~~~R~T~n~iP~t~~~~~~~~lPlg~~i~Pl~~~~~-~P~v~~~~p~RC~rCrayiNPf~~f~-~~~~w~Cn~C 112 (751)
T 3eh1_A 35 KLNCSPDSFRCTLTNIPQTQALLNKAKLPLGLLLHPFRDLTQ-LPVITSNTIVRCRSCRTYINPFVSFI-DQRRWKCNLC 112 (751)
T ss_dssp HHSCCTTTEEESBSSEESSHHHHHHHCCCCEEEECTTCCCSC-CCEECCSCCCBCTTTCCBCCTTCEES-SSSEEECTTT
T ss_pred ccCCCCCeEEeecccCCCCHHHHHhCCCCeEEEEecCCcCCC-CCccCCCCCCcccCccCEeCCceEEe-cCCEEEcccc
Confidence 578999999999999999999999999999999999998754 777664 6899999999999999994 5799999999
Q ss_pred CCccCCCccccCC----CccccCCCCCCCCCceEEEecCCC--CCCCCCCCCCCCCCcEEEEEECCCC---hhHHHHHHH
Q 002851 224 RNLNGSEGEYVAP----SKEELRNFPELSSPMVDYVQTGNN--RSSYVPVSDSRMSAPIILVIDECLD---EPHLQHLQS 294 (874)
Q Consensus 224 ~~~N~~p~~Y~~~----~~~d~~~~PEL~~~tvEy~~p~~~--r~~~~p~~~~~~~p~~vFvID~s~~---~~~l~~l~~ 294 (874)
+.+|++|++|+.. .+.|.++||||+++||||+++++| |+ .++|.|+||||+|.+ +|.++++|+
T Consensus 113 ~~~N~~P~~y~~~~~~~~~~d~~~rpEL~~~tvEy~~p~~y~~r~--------p~pp~yvFvIDvs~~a~~~g~l~~~~~ 184 (751)
T 3eh1_A 113 YRVNDVPEEFMYNPLTRSYGEPHKRPEVQNSTVEFIASSDYMLRP--------PQPAVYLFVLDVSHNAVEAGYLTILCQ 184 (751)
T ss_dssp CCEEECCGGGC---------CGGGSHHHHCSEEEEEECGGGCSSS--------CCCCEEEEEEECSHHHHHHTHHHHHHH
T ss_pred cCCCCCCHHHhcccccccccCcccCchhccceEEEEcChhhhcCC--------CCCcEEEEEEEccHhhhhhhHHHHHHH
Confidence 9999999999632 245778899999999999999987 33 256778999999985 456999999
Q ss_pred HHHHhhhcCCCCc--EEEEEEECceEEEEecCCCC-cceeccccCCCC---CCHHHHHHHhhcCCccccchhhhHHHHHH
Q 002851 295 SLHAFVESIPPTA--RIGIILYGRTVSVYDFSEDS-IASSDVLAGDKL---PTEDSLKALLYGTGVYLSPMHASKQVAHD 368 (874)
Q Consensus 295 sL~~~L~~Lp~~a--~VGlITFd~~V~vy~l~~~~-~~~~~V~~g~~~---~~~~~l~~~l~~~~~fL~pl~e~~~~i~~ 368 (874)
+|+++|+.||+++ +|||||||++||||+|+.+. ...+.|++|.++ |.+ .+||+|++||++.|++
T Consensus 185 sl~~~L~~lp~~~~~~VG~ITfd~~vh~y~l~~~~~~~qmlvv~dl~d~f~P~~----------~~~lv~l~e~~~~i~~ 254 (751)
T 3eh1_A 185 SLLENLDKLPGDSRTRIGFMTFDSTIHFYNLQEGLSQPQMLIVSDIDDVFLPTP----------DSLLVNLYESKELIKD 254 (751)
T ss_dssp HHHHHTTTSSCCTTCEEEEEEESSSEEEEECCTTCSSCEEEEESCTTCTTSCCG----------GGTSEETTTTHHHHHH
T ss_pred HHHHHHHhcCCCcCcEEEEEEeCCEEEEEECCCCcccceeeccccccccCCCCh----------hhhcccHHHHHHHHHH
Confidence 9999999999855 99999999999999999753 345556654332 222 3579999999999999
Q ss_pred HHHhhcCCccccccCCCC-CchHHHHHHHHHHhcCCCccccccccccCCCCcEEEEEecCCCCCCCCcccCCCCCCCch-
Q 002851 369 IFSSLRPYKLNITEASRD-RCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRIIVCAGGPNTYGPGSVPHSFSHPNYL- 446 (874)
Q Consensus 369 lLe~L~~~~~~~~~~~r~-rc~G~AL~vA~~lL~~~~~~~~~~~~~~~~~ggrIi~F~sGppT~GpG~l~~~~~~~~~~- 446 (874)
+|++|+.+..+ ++++ ||+|+||++|..+|+. .||||++|++|+||+|||+|+.++++....
T Consensus 255 lL~~Lp~~~~~---~~~~~~~~G~AL~aA~~ll~~--------------~GGrI~~F~sg~pt~GpG~l~~r~~~~~~~~ 317 (751)
T 3eh1_A 255 LLNALPNMFTN---TRETHSALGPALQAAFKLMSP--------------TGGRVSVFQTQLPSLGAGLLQSREDPNQRSS 317 (751)
T ss_dssp HHHHGGGTSTT---CSCCCCCHHHHHHHHHHHHTT--------------TCEEEEEEECSCCCSSTTCCCCCCCSCGGGG
T ss_pred HHHhhhHhhcC---CCCCccchHHHHHHHHHHhhc--------------CCCEEEEEecCCCCCCCCccccccccccCCC
Confidence 99999876443 3444 9999999999999985 589999999999999999999887543222
Q ss_pred -----hhhHhHHHHHHHHHHHHhhcCeEEEEeeecCCCCCcccchhhhcccccEEEEcCChh--------hHHHHHHHHH
Q 002851 447 -----HMEKMALKWMELLGRKAHQHNAVIDILCAGNCPVRVPVLQPLAKASGGVLVLHDDFG--------EAFGVNLQRA 513 (874)
Q Consensus 447 -----~~ek~a~~fY~~La~~~~~~gisVDiF~~s~d~vglaem~~l~~~TGG~v~~~~~F~--------~~f~~dl~r~ 513 (874)
++ +++.+||++||++|+++||+||+|+++.+|+|++||+.|++.|||.+++|++|+ ++|.+||+|.
T Consensus 318 ~ke~~~~-~~a~~fY~~la~~~~~~~i~VDlF~~s~~~~dlatl~~l~~~TGG~v~~y~~F~~~~~~~~~~~f~~dl~r~ 396 (751)
T 3eh1_A 318 TKVVQHL-GPATDFYKKLALDCSGQQTAVDLFLLSSQYSDLASLACMSKYSAGCIYYYPSFHYTHNPSQAEKLQKDLKRY 396 (751)
T ss_dssp SSSCTTC-SCSCSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHTTTCCEEECTTCBTTTBHHHHHHHHHHHHHH
T ss_pred chhhhhh-cchHHHHHHHHHHHHhcCceEEEEEccCcccChHhHHHHHhhcCceEEEeCCcccccchhHHHHHHHHHHHH
Confidence 22 688999999999999999999999999999999999999999999999999996 2699999999
Q ss_pred HhhccCcceEEEEEeCCCeeEEEeecCCcccccccccccccCccccccccCCCCceEEEEEEEeccCCC-CCceEEEEEE
Q 002851 514 STRAAGSHGFLEIRCSDDILVTQIVGPGEEAHIDTHETFKNDAALSIQMPSVEETQSFAVSMENKRDIE-SNHVFFQFAI 592 (874)
Q Consensus 514 ~~~~~g~~a~l~VR~S~glkV~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~s~~~~~~~~~~~~-~~~~~IQfal 592 (874)
+++++||+|+||||||+||+|++++||+. .++.+.|++++++++++|+|+|++++.+. ...+|||||+
T Consensus 397 l~~~~gf~a~mrVR~S~glkv~~~~G~~~-----------~~~t~~~~l~~i~~d~s~~v~~~~~~~l~~~~~~~~Q~al 465 (751)
T 3eh1_A 397 LTRKIGFEAVMRIRCTKGLSMHTFHGNFF-----------VRSTDLLSLANINPDAGFAVQLSIEESLTDTSLVCFQTAL 465 (751)
T ss_dssp HHSCCEEEEEEEEEECTTEEEEEEESSSE-----------ECSSSEEEEEEECTTCCEEEEEEESSCCCSCSEEEEEEEE
T ss_pred HhhhhccceEEEEEecCCeEEEEeeCCeE-----------eCCCCceEeccCCCCCEEEEEEEEcCCCCCCCceEEEEEE
Confidence 99999999999999999999999999743 23456799999999999999999999876 4789999999
Q ss_pred EEEecCCCEEEEEEeeeeccccchHHHHhhcCHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcccCCC--
Q 002851 593 RYSNVYQADISRVVTVRLPTVDSVSAYLSSFQDEVAAVLIAKRTLLRAKIFSEAIDMRTMIDERVKDIALKFGSQVPK-- 670 (874)
Q Consensus 593 ~Yt~~~G~rriRV~T~~l~vt~~~~~i~~s~D~ea~~~l~ak~av~~~~~~~~~~d~r~~Ld~~li~ll~~y~~~~~~-- 670 (874)
+||+.+|+|||||||+++++++++.++|+++||||++++|||+|++++++ +++.|+|+||+++|+++|++||++++.
T Consensus 466 lYT~~~G~RRiRV~T~~l~vt~~~~~v~~~~DqeA~~~llar~av~~~~~-~~l~d~r~~l~~~li~il~~Yr~~~~~~~ 544 (751)
T 3eh1_A 466 LYTSSKGERRIRVHTLCLPVVSSLADVYAGVDVQAAICLLANMAVDRSVS-SSLSDARDALVNAVVDSLSAYGSTVSNLQ 544 (751)
T ss_dssp EEECTTSCEEEEEEEEEEEEECSHHHHHHTBCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred eeecCCCCEEEEEEEecccccCCHHHHHHhcCHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 99999999999999999999999999999999999999999999999998 589999999999999999999998764
Q ss_pred CCccccchhhhHHHHHHHHhccCcCCCC-CCCCchHHHHHHHHHhccCHHHHHHhhccceeeeccC---------CCccc
Q 002851 671 SKLYRFPKELSALSELLFHLRRSPLLGN-IIGHDDERSVLRNLFLNASFDLSLRMVAPRCLMYREG---------GTFEE 740 (874)
Q Consensus 671 ~~~l~Lp~~l~llP~~~~~L~Rs~~l~~-~~~spDera~~~~~l~~~~v~~sl~miyP~L~~~~~~---------~~~~~ 740 (874)
.++|+||++||+||+|||||+||++|+. +++++|||+|+|++++++++.+++.||||+||+||+. +...+
T Consensus 545 ~~~l~lpe~lkllP~~~~~L~Ks~~~~~~~~~s~Der~~~~~~l~~~~~~~~~~~iyP~L~~~h~l~~~~~~~~~~~~~~ 624 (751)
T 3eh1_A 545 HSALMAPSSLKLFPLYVLALLKQKAFRTGTSTRLDDRVYAMCQIKSQPLVHLMKMIHPNLYRIDRLTDEGAVHVNDRIVP 624 (751)
T ss_dssp --CCEEEGGGTTHHHHHHHHHTSTTTCCSSCCCHHHHHHHHHHHHHSCHHHHHHHHSCEEEECTTCCSTTCEEETTEEEC
T ss_pred CccccCcHHHHHHHHHHHHHHccHhhcCCCCCChhHHHHHHHHHhCCCHHHHHhhccceEEEeecCccccCcccCCCccC
Confidence 3469999999999999999999999985 7899999999999999999999999999999999952 21112
Q ss_pred CCc----ccccccCCcEEEEeCCcEEEEEeCCcccccccc---------------------cHHHHHHHHHHHHHHHhcC
Q 002851 741 LPA----YDLAMQSDKAVVLDHGTDVFIWLGAELAADEGR---------------------SAAALAACRTLAEELSEFR 795 (874)
Q Consensus 741 lP~----~~~sl~~d~iyLLD~g~~i~Iw~G~~v~~~~~~---------------------~~~~l~~~~~~~~~l~~~R 795 (874)
+|. +..+|.+|||||||+|++++||+|++++++... ..++.++++++++.++++|
T Consensus 625 ~P~~l~ls~~~l~~~giyLlD~g~~i~lw~G~~v~~~ll~dlFGv~~~~~~~~~~~~lp~~~t~~s~~vr~ii~~lr~~r 704 (751)
T 3eh1_A 625 QPPLQKLSAEKLTREGAFLMDCGSVFYIWVGKGCDNNFIEDVLGYTNFASIPQKMTHLPELDTLSSERARSFITWLRDSR 704 (751)
T ss_dssp CCCCBCSSGGGCCTTSEEEEECSSEEEEEECTTCCHHHHHHTTCCSSGGGCCSSBCCCCCCSSHHHHHHHHHHHHHHHTS
T ss_pred CCCcccCCHHHcccCCEEEEECCCEEEEEECCCCCHHHHHHHcCCCchhhcCcccccCCCCCCHHHHHHHHHHHHHHhcC
Confidence 332 456899999999999999999999999864311 2377899999999999999
Q ss_pred CCCcEEEEEecCCchHHHHHHhhcCCCCCCcccccccccccccCChHHHhhcccccccCCCchHHHHHHhcccC
Q 002851 796 FPAPRILAFKEGSSQARYFVTRLIPAHKDPPYEQEARFPQLRSLTPEERIKLKSSFLFFDDPSFCEWMRSLKVV 869 (874)
Q Consensus 796 ~p~Pr~i~~~qg~sqaRfl~srL~ps~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~i~TdD~Sl~~f~~~L~~~ 869 (874)
..+|++++++||++.+.+|.+.|+||.+. +-.|+.+|+.||++.
T Consensus 705 ~~~~~l~vvr~~~~~~~~f~~~LvED~~~------------------------------~~~SY~~fL~~~h~~ 748 (751)
T 3eh1_A 705 PLSPILHIVKDESPAKAEFFQHLIEDRTE------------------------------AAFSYYEFLLHVQQQ 748 (751)
T ss_dssp SSCCEEEEEESSSSSHHHHHTTCTTSCBT------------------------------TBCCHHHHHHHHHHH
T ss_pred CCcceEEEEeCCCchHHHHHHhCcccCCC------------------------------CCCCHHHHHHHHHHH
Confidence 99999999999999888999999998752 146999999999863
No 4
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=100.00 E-value=1e-127 Score=1163.21 Aligned_cols=681 Identities=14% Similarity=0.244 Sum_probs=593.0
Q ss_pred CCCcccCCcccccccc-cccccCCCCCCCCCeeeeecCccCCCHhhhhcCCCceEEEeccCCCCCCC---Cccc---cCC
Q 002851 122 SPPHFSNGSAELQHQV-PHAAEETMPVGESSCVLFSAHKVLKKKKQANVPSLGFGALVSPGKEVSPS---LQII---QRD 194 (874)
Q Consensus 122 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~vR~T~n~~P~t~~~~~~~~lPlg~l~tPl~~~~~~---~p~v---~~~ 194 (874)
+++|.+++.+.+++.+ ++++..+..||+|+|||+|||+||.|++++++++|||||+|+||++..+. +|++ +++
T Consensus 14 ~~~f~t~~~~~~pP~~~t~~~~~d~gn~~p~~~R~T~~~iP~t~~l~~~~~lPlg~~i~P~~~~~~~e~~~pvv~~~~~~ 93 (766)
T 3eh2_A 14 TEPFVTGVRGQVPPLVTTNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVDHGESG 93 (766)
T ss_dssp CSEEETTSTTCCCCCTTSCCEEECSSSCCTTTEEESBSEEESSHHHHHHHTCCEEEEECTTCCCCTTSCCCEEECCGGGC
T ss_pred CCCcccCCCCCCCCCCCCceEeeccCCCCCceEEcccccCCCCHHHHHhCCCCeEEEEecCCcCcccCCCCCeecCCCCC
Confidence 5677787767777777 88888899999999999999999999999999999999999999987542 4555 478
Q ss_pred CccCCCCCcccccceEEEcCCceEEEccCCCccCCCccccCC-----CccccCCCCCCCCCceEEEecCCCCCCCCCCCC
Q 002851 195 PHRCHNCGAFANIYCKILLGSGQWQCVICRNLNGSEGEYVAP-----SKEELRNFPELSSPMVDYVQTGNNRSSYVPVSD 269 (874)
Q Consensus 195 p~RC~~C~AylNP~~~~~~~~~~W~C~fC~~~N~~p~~Y~~~-----~~~d~~~~PEL~~~tvEy~~p~~~r~~~~p~~~ 269 (874)
|+||++|||||||||+|+++|++|+||||+++|++|++|++. .+.|.++||||++++|||+++.+|.-.. .
T Consensus 94 pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~N~~P~~Y~~~l~~~g~r~d~~~rpEL~~~~vef~a~~eY~~~~----~ 169 (766)
T 3eh2_A 94 PLRCNRCKAYMCPFMQFIEGGRRFQCCFCSCINDVPPQYFQHLDHTGKRVDAYDRPELSLGSYEFLATVDYCKNN----K 169 (766)
T ss_dssp CCBCTTTCCBCCTTCEEEGGGTEEECTTTCCEEECCTTTTGGGGGSSSCCCCSCCHHHHCSEEEEECCGGGSGGG----S
T ss_pred CCccCCCCCEeCCceEEecCCCEEEeccccccCCCCHHHhccccccccccccccCcccccCceeeecCHhhccCC----C
Confidence 999999999999999999999999999999999999999753 4678889999999999999999983100 1
Q ss_pred CCCCCcEEEEEECCCCh---hHHHHHHHHHHHhhhcCCCC-------cEEEEEEECceEEEEecCCCC-cceeccccCCC
Q 002851 270 SRMSAPIILVIDECLDE---PHLQHLQSSLHAFVESIPPT-------ARIGIILYGRTVSVYDFSEDS-IASSDVLAGDK 338 (874)
Q Consensus 270 ~~~~p~~vFvID~s~~~---~~l~~l~~sL~~~L~~Lp~~-------a~VGlITFd~~V~vy~l~~~~-~~~~~V~~g~~ 338 (874)
..++|.|+||||+|.++ |++++++++|+++|+.||++ ++|||||||++||||+|+.+. .++++|+++..
T Consensus 170 ~p~pp~y~FvIDvs~~av~sg~l~~~~~si~~~L~~lp~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~~~q~~vv~dl~ 249 (766)
T 3eh2_A 170 FPSPPAFIFMIDVSYNAIRTGLVRLLCEELKSLLDFLPREGGAEESAIRVGFVTYNKVLHFYNVKSSLAQPQMMVVSDVA 249 (766)
T ss_dssp CCCCCEEEEEEECSHHHHHTTHHHHHHHHHHHHGGGCCCCSSCSSCCCEEEEEEESSSEEEEECCTTCSSCEEEEECCTT
T ss_pred CCCCCEEEEEEECchhhccchHHHHHHHHHHHHHHhCCcccccCCccceEEEEEeCCEEEEEECCCCCCCceEEEecChh
Confidence 12567789999999864 79999999999999999964 999999999999999999753 56778876433
Q ss_pred CCCHHHHHHHhh-cCCccccchhhhHHHHHHHHHhhcCCccccccCCCCCchHHHHHHHHHHhcCCCccccccccccCCC
Q 002851 339 LPTEDSLKALLY-GTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALAIIQGPSAEMSRGVVKRPGG 417 (874)
Q Consensus 339 ~~~~~~l~~~l~-~~~~fL~pl~e~~~~i~~lLe~L~~~~~~~~~~~r~rc~G~AL~vA~~lL~~~~~~~~~~~~~~~~~ 417 (874)
+ ++. ..++||+|++||++.|+++|++|++++.+. ..+.+|+|+||++|+.+|+. .+.
T Consensus 250 d--------~f~P~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~--~~~~t~~g~al~aa~~~l~~------------~~~ 307 (766)
T 3eh2_A 250 D--------MFVPLLDGFLVNVNESRAVITSLLDQIPEMFADT--RETETVFVPVIQAGMEALKA------------AEC 307 (766)
T ss_dssp T--------CCCCCCTTSSBCTTTTHHHHHHHHHHHHHHHTTC--CCCCCCSHHHHHHHHHHHHH------------TTC
T ss_pred h--------hccccccceeEeHHHHHHHHHHHHHhhhhhccCC--CCCcchHHHHHHHHHHHhcc------------CCC
Confidence 2 221 235789999999999999999999875443 24679999999999999975 246
Q ss_pred CcEEEEEecC-CCCCCCCcccCCCCCCCchh-----hhHhHHHHHHHHHHHHhhcCeEEEEeeecCCCCCcccchhhhcc
Q 002851 418 NSRIIVCAGG-PNTYGPGSVPHSFSHPNYLH-----MEKMALKWMELLGRKAHQHNAVIDILCAGNCPVRVPVLQPLAKA 491 (874)
Q Consensus 418 ggrIi~F~sG-ppT~GpG~l~~~~~~~~~~~-----~ek~a~~fY~~La~~~~~~gisVDiF~~s~d~vglaem~~l~~~ 491 (874)
||||++|++| |+|.|||+|+.+++++..++ ..+++.+||++||++|+++||+||+|+++.+|+|++||+.|++.
T Consensus 308 GGkI~~F~s~lP~t~GpG~l~~r~~~~~~~sdke~~~~~~a~~fY~~la~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~ 387 (766)
T 3eh2_A 308 AGKLFLFHTSLPIAEAPGKLKNRDDRKLINTDKEKTLFQPQTGAYQTLAKECVAQGCCVDLFLFPNQYVDVATLSVVPQL 387 (766)
T ss_dssp CEEEEEEECSCCCSSSTTCCCCCCCGGGTTSTTGGGGTSCSSTHHHHHHHHHHHHTEEEEEEECCSSCCCHHHHTHHHHH
T ss_pred CcEEEEEecCCCCcCCCcccccccccccCCCcchhhhccchHHHHHHHHHHHHhCCeEEEEEEecCCCcChHHHHHHHhh
Confidence 9999999998 55589999999876543321 12588999999999999999999999999999999999999999
Q ss_pred cccEEEEcCChhh-----HHHHHHHHHHhhccCcceEEEEEeCCCeeEEEeecCCcccccccccccccCccccccccCCC
Q 002851 492 SGGVLVLHDDFGE-----AFGVNLQRASTRAAGSHGFLEIRCSDDILVTQIVGPGEEAHIDTHETFKNDAALSIQMPSVE 566 (874)
Q Consensus 492 TGG~v~~~~~F~~-----~f~~dl~r~~~~~~g~~a~l~VR~S~glkV~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~v~ 566 (874)
|||.+++|++|+. +|.++|+|.+++++||+|+||||||+||+|++++|| ++.++..+|++++++
T Consensus 388 TGG~v~~y~~F~~~~d~~~f~~dl~~~l~~~~gf~a~mrVR~S~glkv~~~~G~-----------~~~~~t~~~~l~~i~ 456 (766)
T 3eh2_A 388 TGGSVYKYASFQVENDQERFLSDLRRDVQKVVGFDAVMRVRTSTGIRAVDFFGA-----------FYMSNTTDVELAGLD 456 (766)
T ss_dssp TTCCEEECTTCCHHHHHHHHHHHHHHHHHSCEEEEEEEEEEECTTEEEEEEEES-----------CBCSSSSCEEEEEEE
T ss_pred cCceEEEeCCCcchhHHHHHHHHHHHHhhhcceeeEEEEEEecCCeEEEEeECC-----------eecCCCCceeeccCC
Confidence 9999999999953 589999999999999999999999999999999996 333445678999999
Q ss_pred CceEEEEEEEeccCCC-CCceEEEEEEEEEecCCCEEEEEEeeeeccccchHHHHhhcCHHHHHHHHHHHHHHHhhccCC
Q 002851 567 ETQSFAVSMENKRDIE-SNHVFFQFAIRYSNVYQADISRVVTVRLPTVDSVSAYLSSFQDEVAAVLIAKRTLLRAKIFSE 645 (874)
Q Consensus 567 ~~~s~~~~~~~~~~~~-~~~~~IQfal~Yt~~~G~rriRV~T~~l~vt~~~~~i~~s~D~ea~~~l~ak~av~~~~~~~~ 645 (874)
++++|+|+|++++.+. ...+|||||++||+.+|+|||||||++++|++++.++|++|||||++++|||+|++++.+ ++
T Consensus 457 ~d~s~~v~f~~~~~l~~~~~~~~Q~allYt~~~G~RRiRV~T~~l~vt~~~~~v~~~~Dqea~~~llar~av~~~~~-~~ 535 (766)
T 3eh2_A 457 GDKTVTVEFKHDDRLNEESGALLQCALLYTSCAGQRRLRIHNLALNCCTQLADLYRNCETDTLINYMAKFAYRGVLN-SP 535 (766)
T ss_dssp TTCCEEEEEEESSCCCTTTCEEEEEEEEEECTTSCEEEEEEEEEEEEESSHHHHHHTBCHHHHHHHHHHHHHHHTTT-SC
T ss_pred CCceEEEEEEecCCCCCCCcEEEEEEEEeEcCCCCEEEEEEEEeeEecCCHHHHHHhcCHHHHHHHHHHHHHHHhhh-CC
Confidence 9999999999999876 579999999999999999999999999999999999999999999999999999999988 58
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCC---CCccccchhhhHHHHHHHHhccCcCCCC-CCCCchHHHHHHHHHhccCHHHH
Q 002851 646 AIDMRTMIDERVKDIALKFGSQVPK---SKLYRFPKELSALSELLFHLRRSPLLGN-IIGHDDERSVLRNLFLNASFDLS 721 (874)
Q Consensus 646 ~~d~r~~Ld~~li~ll~~y~~~~~~---~~~l~Lp~~l~llP~~~~~L~Rs~~l~~-~~~spDera~~~~~l~~~~v~~s 721 (874)
+.++|++|+++|++++..||+.++. .+||+||++||+||+||||||||++|++ +++++|||+|+|++|+++++.++
T Consensus 536 ~~~~R~~l~~~~~~~l~~Yrk~~~~~~s~~ql~lp~~lkllP~~~~~L~Ks~~l~~~~~~s~Der~~~~~~l~~~~~~~~ 615 (766)
T 3eh2_A 536 VKAVRDTLITQCAQILACYRKNCASPSSAGQLILPECMKLLPVYLNCVLKSDVLQPGAEVTTDDRAYVRQLVTSMDVTET 615 (766)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC------CCCCCCGGGTTHHHHHHHHHTSTTTSCCTTCCHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCccceecCHHHHHHHHHHHHHHccHhhcCCCCCCccHHHHHHHHHHCCCHHHH
Confidence 9999999999999999999998742 4679999999999999999999999997 68899999999999999999999
Q ss_pred HHhhccceeeeccCC-----CcccCCcccccccCCcEEEEeCCcEEEEEeCCccccccc---------------------
Q 002851 722 LRMVAPRCLMYREGG-----TFEELPAYDLAMQSDKAVVLDHGTDVFIWLGAELAADEG--------------------- 775 (874)
Q Consensus 722 l~miyP~L~~~~~~~-----~~~~lP~~~~sl~~d~iyLLD~g~~i~Iw~G~~v~~~~~--------------------- 775 (874)
+.||||+||+||+.. ..++++++..+|.+|||||||+|++|+||+|++++++..
T Consensus 616 l~~iyP~L~~~h~~~~~~~~~P~~v~ls~~~l~~~giyLlD~g~~i~lw~G~~v~~~~l~dlFgv~~~~~i~~~~~~lp~ 695 (766)
T 3eh2_A 616 NVFFYPRLLPLTKSPVESTTEPPAVRASEERLSNGDIYLLENGLNLFLWVGASVQQGVVQSLFSVSSFSQITSGLSVLPV 695 (766)
T ss_dssp HHHHSCEEEECSSCCCSCC--CCCBCSSGGGCCTTCEEEEECSSEEEEEECTTCCHHHHHHHHSCSSGGGSCTTCCSCCC
T ss_pred HHHHhheEEEeecCCcccccCCCCcCCcHHHcCCCcEEEEEcCcEEEEEecCCCCHHHHHHHcCCCchhhcCcccccCCC
Confidence 999999999998532 112234466789999999999999999999999986521
Q ss_pred ccHHHHHHHHHHHHHHHhcCCCCcEEEEEecCCchHHHHHHhhcCCCCCCcccccccccccccCChHHHhhcccccccCC
Q 002851 776 RSAAALAACRTLAEELSEFRFPAPRILAFKEGSSQARYFVTRLIPAHKDPPYEQEARFPQLRSLTPEERIKLKSSFLFFD 855 (874)
Q Consensus 776 ~~~~~l~~~~~~~~~l~~~R~p~Pr~i~~~qg~sqaRfl~srL~ps~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~i~Td 855 (874)
...++.++++++++.|++.|..++++++++||+..+.+|.+.|+||++. .+
T Consensus 696 ~~~~~s~~vr~ii~~lr~~~~~~~~l~ivr~~~~~~~~f~~~LvED~~~-----------------------~~------ 746 (766)
T 3eh2_A 696 LDNPLSKKVRGLIDSLRAQRSRYMKLTVVKQEDKMEMLFKHFLVEDKSL-----------------------SG------ 746 (766)
T ss_dssp CSSHHHHHHHHHHHHHHTTSSSCCEEEEEESSSSTHHHHHTTCTTSCCT-----------------------TT------
T ss_pred CCCHHHHHHHHHHHHHHHhCCCCceEEEEeCCCChHHHHHHhCcccCCC-----------------------CC------
Confidence 1346789999999999999999999999999988888999999998752 01
Q ss_pred CchHHHHHHhcccC
Q 002851 856 DPSFCEWMRSLKVV 869 (874)
Q Consensus 856 D~Sl~~f~~~L~~~ 869 (874)
..|+.+|+.||++.
T Consensus 747 ~~SY~dfL~~lh~~ 760 (766)
T 3eh2_A 747 GASYVDFLCHMHKE 760 (766)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 37999999999863
No 5
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=100.00 E-value=8.2e-127 Score=1155.83 Aligned_cols=682 Identities=14% Similarity=0.231 Sum_probs=589.1
Q ss_pred CCCcccCCcccccccc-cccccCCCCCCCCCeeeeecCccCCCHhhhhcCCCceEEEeccCCCCCCC---Cccc---cCC
Q 002851 122 SPPHFSNGSAELQHQV-PHAAEETMPVGESSCVLFSAHKVLKKKKQANVPSLGFGALVSPGKEVSPS---LQII---QRD 194 (874)
Q Consensus 122 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~vR~T~n~~P~t~~~~~~~~lPlg~l~tPl~~~~~~---~p~v---~~~ 194 (874)
+.+|.+++.+.+++.+ .++...+..||+|+|||+|||+||.|++++++++|||||+|+||++..+. +|++ +++
T Consensus 18 ~~~~~t~~~~~~pp~~~~~~~~~d~gn~~p~~~R~T~n~iP~t~~l~~~~~lPlg~~i~Pl~~~~~~e~p~pvv~~~~~~ 97 (770)
T 3efo_B 18 GQVYATNTRGQIPPLVTTDCMIQDQGNASPRFIRCTTYCFPCTSDMAKQAQIPLAAVIKPFATIPSNESPLYLVNHGESG 97 (770)
T ss_dssp TSEEETTSSSCCCCCTTSCCEEECSSSCCTTTEEESBSEEESSHHHHHHHCCCCEEEECTTCCCCTTSCCCCEECCTTTC
T ss_pred CCCccCCCCCCCCCCCCCceeeeecCCCCCCeEEeecccCCCCHHHHHhCCCCeEEEEEcCCCCCcccCCCCcccCCCCC
Confidence 3467776566666666 77777899999999999999999999999999999999999999987642 4555 578
Q ss_pred CccCCCCCcccccceEEEcCCceEEEccCCCccCCCccccCC-----CccccCCCCCCCCCceEEEecCCCCCCCCCCCC
Q 002851 195 PHRCHNCGAFANIYCKILLGSGQWQCVICRNLNGSEGEYVAP-----SKEELRNFPELSSPMVDYVQTGNNRSSYVPVSD 269 (874)
Q Consensus 195 p~RC~~C~AylNP~~~~~~~~~~W~C~fC~~~N~~p~~Y~~~-----~~~d~~~~PEL~~~tvEy~~p~~~r~~~~p~~~ 269 (874)
|+||++|||||||||+|+++|++|+||||+++|++|++|++. .+.|.++||||+++||||++|.+|.... .
T Consensus 98 pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~N~~P~~Y~~~l~~~g~r~d~~~rpEL~~~tvEf~ap~eY~~~~----~ 173 (770)
T 3efo_B 98 PVRCNRCKAYMCPFMQFIEGGRRYQCGFCNCVNDVPPFYFQHLDHIGRRLDHYEKPELSLGSYEYVATLDYCRKS----K 173 (770)
T ss_dssp SCBCTTTCCBSCTTCEEEGGGTEEECTTTCCEEECCGGGCCCCCSSSCTTTGGGSHHHHCSEEEEECCGGGSGGG----S
T ss_pred CCccCCCCCCcCCceEEecCCCEEEeccccccCCCchHhhccccccccccccccCcccccCceeeecCHHHhccC----C
Confidence 999999999999999999999999999999999999999753 3567889999999999999999983100 1
Q ss_pred CCCCCcEEEEEECCCC---hhHHHHHHHHHHHhhhcCCCC-------cEEEEEEECceEEEEecCCCC-cceeccccCCC
Q 002851 270 SRMSAPIILVIDECLD---EPHLQHLQSSLHAFVESIPPT-------ARIGIILYGRTVSVYDFSEDS-IASSDVLAGDK 338 (874)
Q Consensus 270 ~~~~p~~vFvID~s~~---~~~l~~l~~sL~~~L~~Lp~~-------a~VGlITFd~~V~vy~l~~~~-~~~~~V~~g~~ 338 (874)
..++|.|+||||+|.+ +|++++++++|+++|+.||++ ++|||||||++||||+|+... ..++.|++|..
T Consensus 174 ~p~pp~y~FvIDvs~~av~sg~l~~~~~sl~~~L~~lP~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~q~q~~vv~d~~ 253 (770)
T 3efo_B 174 PPNPPAFIFMIDVSYSNIKNGLVKLICEELKTMLEKIPKEEQEETSAIRVGFITYNKVLHFFNVKSNLAQPQMMVVTDVG 253 (770)
T ss_dssp CCCCCEEEEEEECSHHHHHTTHHHHHHHHHHHHGGGCCCCTTSSSCSCEEEEEEESSSEEEEECCTTCSSCEEEEECCTT
T ss_pred CCCCcEEEEEEEcchhhccchHHHHHHHHHHHHHHhCCccccccCccceEEEEEeCCEEEEEeCCCcccCceEEEecccc
Confidence 1356778999999986 479999999999999999964 899999999999999998653 34556665432
Q ss_pred CCCHHHHHHHhhcCCccccchhhhHHHHHHHHHhhcCCccccccCCCCCchHHHHHHHHHHhcCCCccccccccccCCCC
Q 002851 339 LPTEDSLKALLYGTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALAIIQGPSAEMSRGVVKRPGGN 418 (874)
Q Consensus 339 ~~~~~~l~~~l~~~~~fL~pl~e~~~~i~~lLe~L~~~~~~~~~~~r~rc~G~AL~vA~~lL~~~~~~~~~~~~~~~~~g 418 (874)
++ .+...++||+|++||++.|+++|++|+.++.+. ..+.+|+|+||++|+.+|+. .+.|
T Consensus 254 d~-------f~P~~~~~Lv~l~e~~~~i~~lL~~L~~~~~~~--~~~~t~~g~al~aa~~~l~~------------~~~G 312 (770)
T 3efo_B 254 EV-------FVPLLDGFLVNYQESQSVIHNLLDQIPDMFADS--NENETVFAPVIQAGMEALKA------------ADCP 312 (770)
T ss_dssp SC-------CCCCSSSSSBCTTTTHHHHHHHHHHHHHHHHTC--CCCCCCCHHHHHHHHHHHHH------------HTCC
T ss_pred cc-------cCCCccceeeeHHHHHHHHHHHHHhhHhhccCC--CCCcchHHHHHHHHHHHhcc------------CCCC
Confidence 21 011135789999999999999999999874332 24678999999999999974 2358
Q ss_pred cEEEEEecC-CCCCCCCcccCCCCCCCchh-----hhHhHHHHHHHHHHHHhhcCeEEEEeeecCCCCCcccchhhhccc
Q 002851 419 SRIIVCAGG-PNTYGPGSVPHSFSHPNYLH-----MEKMALKWMELLGRKAHQHNAVIDILCAGNCPVRVPVLQPLAKAS 492 (874)
Q Consensus 419 grIi~F~sG-ppT~GpG~l~~~~~~~~~~~-----~ek~a~~fY~~La~~~~~~gisVDiF~~s~d~vglaem~~l~~~T 492 (874)
|||++|++| |+|.|||+|+.+++++..++ ..+++.+||++||++|+++||+||+|+++.+|+|++||+.|++.|
T Consensus 313 GkI~~F~s~lP~t~GpG~l~~r~~~~~~~t~ke~~~~~~a~~fY~~lA~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~T 392 (770)
T 3efo_B 313 GKLFIFHSSLPTAEAPGKLKNRDDKKLVNTDKEKILFQPQTNVYDSLAKDCVAHGCSVTLFLFPSQYVDVASLGLVPQLT 392 (770)
T ss_dssp EEEEEEECSCCCSSSTTCCCCCCCCCCSSCSCGGGGGSCSSSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHHT
T ss_pred cEEEEEecCCCCcCCCccccccccccccCCcchhhhhcchHHHHHHHHHHHHHcCeEEEEEEecCCccChHHHHHHHhhc
Confidence 999999998 55699999999877654322 126889999999999999999999999999999999999999999
Q ss_pred ccEEEEcCChh-----hHHHHHHHHHHhhccCcceEEEEEeCCCeeEEEeecCCcccccccccccccCccccccccCCCC
Q 002851 493 GGVLVLHDDFG-----EAFGVNLQRASTRAAGSHGFLEIRCSDDILVTQIVGPGEEAHIDTHETFKNDAALSIQMPSVEE 567 (874)
Q Consensus 493 GG~v~~~~~F~-----~~f~~dl~r~~~~~~g~~a~l~VR~S~glkV~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 567 (874)
||.+++|++|+ ++|.++|.|.+++++||+|+||||||+||+|++++|| ++..+..+|+++++++
T Consensus 393 GG~v~~y~~F~~~~~~~~f~~dl~~~l~~~~gf~a~mrVR~S~gl~v~~~~G~-----------~~~~~t~~~~l~~~~~ 461 (770)
T 3efo_B 393 GGTLYKYNNFQMHLDRQQFLNDLRNDIEKKIGFDAIMRVRTSTGFRATDFFGG-----------ILMNNTTDVEMAAIDC 461 (770)
T ss_dssp TCCEEECTTCCHHHHHHHHHHHHHHHHHSCEEEEEEEEEEECTTEEEEEEESS-----------CBCSSSSCEEEEEEES
T ss_pred CceEEEecCCcchhHHHHHHHHHHHhhhhceeeeEEEEEEecCCeEEEEeECC-----------eeCCCCCceEecccCc
Confidence 99999999996 3688999999999999999999999999999999996 3333446789999999
Q ss_pred ceEEEEEEEeccCCCC-CceEEEEEEEEEecCCCEEEEEEeeeeccccchHHHHhhcCHHHHHHHHHHHHHHHhhccCCH
Q 002851 568 TQSFAVSMENKRDIES-NHVFFQFAIRYSNVYQADISRVVTVRLPTVDSVSAYLSSFQDEVAAVLIAKRTLLRAKIFSEA 646 (874)
Q Consensus 568 ~~s~~~~~~~~~~~~~-~~~~IQfal~Yt~~~G~rriRV~T~~l~vt~~~~~i~~s~D~ea~~~l~ak~av~~~~~~~~~ 646 (874)
+++|+|+|++++.+.. ..+|||||++||+.+|+|||||||++++|++++.++|+++||||++++|||+|++++++ +++
T Consensus 462 d~s~~v~f~~~~~l~~~~~~~~Q~allYt~~~G~RRiRV~T~~l~vt~~~~~v~~~~Dqea~~~llar~av~~~~~-~~l 540 (770)
T 3efo_B 462 DKAVTVEFKHDDKLSEDSGALIQCAVLYTTISGQRRLRIHNLGLNCSSQLADLYKSCETDALINFFAKSAFKAVLH-QPL 540 (770)
T ss_dssp SCCEEEEEEESSCCBTTTBEEEEEEEEEECTTCCEEEEEEEEEEEEESCHHHHHHTBCHHHHHHHHHHHHHHHTTT-SCH
T ss_pred CceEEEEEEecCCCCCCCcEEEEEEEEEEcCCCCEEEEEEEechhhcccHHHHHHhcCHHHHHHHHHHHHHHHhcc-CCH
Confidence 9999999999998764 58999999999999999999999999999999999999999999999999999999998 589
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCC---CCccccchhhhHHHHHHHHhccCcCCCC-CCCCchHHHHHHHHHhccCHHHHH
Q 002851 647 IDMRTMIDERVKDIALKFGSQVPK---SKLYRFPKELSALSELLFHLRRSPLLGN-IIGHDDERSVLRNLFLNASFDLSL 722 (874)
Q Consensus 647 ~d~r~~Ld~~li~ll~~y~~~~~~---~~~l~Lp~~l~llP~~~~~L~Rs~~l~~-~~~spDera~~~~~l~~~~v~~sl 722 (874)
+++|++|.++|++++..||+.++. .++|+||++||+||+|||||+||++|++ +++++|||+|+|++++++++.+++
T Consensus 541 ~~~r~~L~~~~~~~l~~Yrk~~~~~~s~~ql~Lp~~lkllP~~~~~L~Ks~~l~~~~~~s~Der~~~~~~l~~~~~~~~l 620 (770)
T 3efo_B 541 KVIREILVNQTAHMLACYRKNCASPSAASQLILPDSMKVLPVYMNCLLKNCVLLSRPEISTDERAYQRQLVMTMGVADSQ 620 (770)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCCCCTTEEEECGGGTTHHHHHHHHHHSGGGSCSSSSCHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCccceecCHHHHHHHHHHHHHhCcHhhcCCCCCCccHHHHHHHHHHCCCHHHHH
Confidence 999999999999999999998743 3569999999999999999999999997 789999999999999999999999
Q ss_pred HhhccceeeeccCC-----CcccCCcccccccCCcEEEEeCCcEEEEEeCCcccccccc---------------------
Q 002851 723 RMVAPRCLMYREGG-----TFEELPAYDLAMQSDKAVVLDHGTDVFIWLGAELAADEGR--------------------- 776 (874)
Q Consensus 723 ~miyP~L~~~~~~~-----~~~~lP~~~~sl~~d~iyLLD~g~~i~Iw~G~~v~~~~~~--------------------- 776 (874)
.||||+||+||+.. ...+++++..+|.+|||||||+|++|+||+|++++++...
T Consensus 621 ~~iyP~L~~~h~l~~~~~~~P~~v~ls~~~l~~~giyLLD~g~~i~lw~G~~v~~~l~~~lfgv~~~~~i~~~~~~lp~~ 700 (770)
T 3efo_B 621 LFFYPQLLPIHTLDVKSTMLPAAVRCSESRLSEEGIFLLANGLHMFLWLGVSSPPELIQGIFNVPSFAHINTDMTLLPEV 700 (770)
T ss_dssp HHHSCEEEECTTCCSSSCSCCCCCCSSGGGCCTTCEEEEECSSEEEEEECTTCCHHHHHHHHSSSSGGGCCTTCCSCCCC
T ss_pred HhhccceEEEeccccccccCCCCcCCcHHHcCCCcEEEEECCcEEEEEecCCCCHHHHHHhcCCCchhhcCcccccCCCC
Confidence 99999999998632 1123344667899999999999999999999999865311
Q ss_pred cHHHHHHHHHHHHHHHhcCCCCcEEEEEecCCchHHHHHHhhcCCCCCCcccccccccccccCChHHHhhcccccccCCC
Q 002851 777 SAAALAACRTLAEELSEFRFPAPRILAFKEGSSQARYFVTRLIPAHKDPPYEQEARFPQLRSLTPEERIKLKSSFLFFDD 856 (874)
Q Consensus 777 ~~~~l~~~~~~~~~l~~~R~p~Pr~i~~~qg~sqaRfl~srL~ps~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~i~TdD 856 (874)
..++.++++++++.|++.|..++++++++||+..+.+|.+.|+||.+- ...
T Consensus 701 ~~~~s~~vr~ii~~lr~~r~~~~~l~ivr~~~~~e~~f~~~LvED~~~-----------------------------~~~ 751 (770)
T 3efo_B 701 GNPYSQQLRMIMGIIQQKRPYSMKLTIVKQREQPEMVFRQFLVEDKGL-----------------------------YGG 751 (770)
T ss_dssp CSSHHHHHHHHHHHHHTTCSSCCEEEEEESTTSTTHHHHTTCTTSCC--------------------------------C
T ss_pred CCHHHHHHHHHHHHHHHhCCCCccEEEEeCCCChHHHHHHhCcccCCC-----------------------------CCC
Confidence 235788999999999999999999999999998888999999998751 013
Q ss_pred chHHHHHHhcccC
Q 002851 857 PSFCEWMRSLKVV 869 (874)
Q Consensus 857 ~Sl~~f~~~L~~~ 869 (874)
.|+.+|+.||++.
T Consensus 752 ~SY~dfL~~lh~~ 764 (770)
T 3efo_B 752 SSYVDFLCCVHKE 764 (770)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 6999999999863
No 6
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=100.00 E-value=2.2e-123 Score=1136.92 Aligned_cols=658 Identities=16% Similarity=0.218 Sum_probs=558.9
Q ss_pred ccccCCCCCCCCCeeeeecCccCCCHhhhhcCCCceEEEeccCCCCCC---CCccccC-CCccCCCCCcccccceEEEcC
Q 002851 139 HAAEETMPVGESSCVLFSAHKVLKKKKQANVPSLGFGALVSPGKEVSP---SLQIIQR-DPHRCHNCGAFANIYCKILLG 214 (874)
Q Consensus 139 ~~~~~~~~~~~~~~vR~T~n~~P~t~~~~~~~~lPlg~l~tPl~~~~~---~~p~v~~-~p~RC~~C~AylNP~~~~~~~ 214 (874)
.++..+..||+++|||+|||+||.|++++++++|||||+|+||++..+ .+|++.. +|+||++|+|||||||+|+.+
T Consensus 168 ~~~~~d~gn~~p~~vR~T~n~iP~t~~l~~~~~lPlg~vv~P~a~~~~~~~~vpvv~~~~pvRC~rCrAYiNPf~~~~~~ 247 (926)
T 1m2v_B 168 MLVPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDGLIVRCRRCRSYMNPFVTFIEQ 247 (926)
T ss_dssp SSSCSSSSSCCTTTEEESBSSEESBHHHHHHHTCCCEEEECSCCSSSTTSSCCCEECSCCCCBCSSSCCBCCTTCEEETT
T ss_pred ccccccCCCCCCCceecccccCCCCHHHHHhCCCCeEEEEecCCCcccCCCCCCccCCCCCCccCCccCEecCceEEeCC
Confidence 344567889999999999999999999999999999999999997632 3566665 499999999999999999999
Q ss_pred CceEEEccCCCccCCCccccCC---CccccCCCCCCCCCceEEEecCCCCCCCCCCCCCCCCCcEEEEEECCCCh---hH
Q 002851 215 SGQWQCVICRNLNGSEGEYVAP---SKEELRNFPELSSPMVDYVQTGNNRSSYVPVSDSRMSAPIILVIDECLDE---PH 288 (874)
Q Consensus 215 ~~~W~C~fC~~~N~~p~~Y~~~---~~~d~~~~PEL~~~tvEy~~p~~~r~~~~p~~~~~~~p~~vFvID~s~~~---~~ 288 (874)
|++|+||||+++|++|++|+.. .+.|+.+||||+++||||+++.+|... ...+|.||||||+|.++ +.
T Consensus 248 g~~W~CnfC~~~N~~P~~Y~~~~~~~~~d~~~RpEL~~~tvEyi~p~ey~~r------~p~ppvyvFvIDvS~~av~~g~ 321 (926)
T 1m2v_B 248 GRRWRCNFCRLANDVPMQMDQSDPNDPKSRYDRNEIKCAVMEYMAPKEYTLR------QPPPATYCFLIDVSQSSIKSGL 321 (926)
T ss_dssp TTEEECTTTCCEEECCGGGTTTSTTCGGGGGGSHHHHCSEEEEECCGGGCSS------CCCCCBEEEEEECSHHHHHSCH
T ss_pred CCEEEccCCCCCCCCchhhccccccCccccccCccccCceEEEEcChhhccC------CCCCcEEEEEEECCHHHHhhhH
Confidence 9999999999999999999721 356788999999999999999987211 12567889999999864 56
Q ss_pred HHHHHHHHHHhhhcCCC---CcEEEEEEECceEEEEecCCCCc--------ceeccccCCCCCCHHHHHHHhhcCCcccc
Q 002851 289 LQHLQSSLHAFVESIPP---TARIGIILYGRTVSVYDFSEDSI--------ASSDVLAGDKLPTEDSLKALLYGTGVYLS 357 (874)
Q Consensus 289 l~~l~~sL~~~L~~Lp~---~a~VGlITFd~~V~vy~l~~~~~--------~~~~V~~g~~~~~~~~l~~~l~~~~~fL~ 357 (874)
++++|++|+++|+.||+ +++|||||||++||||+|+.+.. ..+.++++..++- +-...+||+
T Consensus 322 l~~l~~sI~~~L~~LP~~~~~~~VGlITFds~Vh~y~l~~~~~g~k~~~~q~qmlvvsdl~d~f-------~P~~~~~Lv 394 (926)
T 1m2v_B 322 LATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINMMDIADLEEPF-------LPRPNSMVV 394 (926)
T ss_dssp HHHHHHHHHHTTTTSCCTTSCCEECEEEESSSEEEEECCCC---------CCEEEEECCCSSCC-------CSCSSSSSE
T ss_pred HHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEecCCcccCCcccccchhhcccccccccc-------CCCcccccc
Confidence 99999999999999996 79999999999999999987532 3344444322110 011356899
Q ss_pred chhhhHHHHHHHHHhhcCCccccccCCC-CCchHHHHHHHHHHhcCCCccccccccccCCCCcEEEEEecCCCCCCCCcc
Q 002851 358 PMHASKQVAHDIFSSLRPYKLNITEASR-DRCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRIIVCAGGPNTYGPGSV 436 (874)
Q Consensus 358 pl~e~~~~i~~lLe~L~~~~~~~~~~~r-~rc~G~AL~vA~~lL~~~~~~~~~~~~~~~~~ggrIi~F~sGppT~GpG~l 436 (874)
|++||++.|+++|++|+.++.+ .++ .||+|+||++|..+|+. .||||++|++|+||+|||+|
T Consensus 395 ~l~e~~~~I~~lLe~L~~~~~~---~~~~~~~~G~AL~aA~~lL~~--------------~GGrI~~F~sg~Pt~GpG~l 457 (926)
T 1m2v_B 395 SLKACRQNIETLLTKIPQIFQS---NLITNFALGPALKSAYHLIGG--------------VGGKIIVVSGTLPNLGIGKL 457 (926)
T ss_dssp ETTTTHHHHHHHHHHHHHHTSS---CCCCCCCHHHHHHHHHHHHTT--------------TCEEEEEEESSCCCSSTTCC
T ss_pred cHHHHHHHHHHHHHhhhhhhcC---CCCCCccHHHHHHHHHHHHHh--------------hCCEEEEEecCCCCCCCCcc
Confidence 9999999999999999985433 334 59999999999999985 48999999999999999999
Q ss_pred cCCCCCCCchh------hhHhHHHHHHHHHHHHhhcCeEEEEeeecCCCCCcccchhhhcccccEEEEcCChhh------
Q 002851 437 PHSFSHPNYLH------MEKMALKWMELLGRKAHQHNAVIDILCAGNCPVRVPVLQPLAKASGGVLVLHDDFGE------ 504 (874)
Q Consensus 437 ~~~~~~~~~~~------~ek~a~~fY~~La~~~~~~gisVDiF~~s~d~vglaem~~l~~~TGG~v~~~~~F~~------ 504 (874)
+.+++++.... ..+++.+||++||++|+++||+||||+++.+|+|++||+.|++.|||.+++|++|+.
T Consensus 458 ~~re~~~~~~~~ke~~~ll~~a~~FYk~LA~~~~~~gisVDlF~~s~~~vdla~l~~l~~~TGG~v~~y~~F~~~~~~d~ 537 (926)
T 1m2v_B 458 QRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPNDI 537 (926)
T ss_dssp CCCCC----CCTTHHHHHTSCSSTHHHHHHHHHHHHTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEEEESCCTTSHHHH
T ss_pred cccccccccCcccchhhhccchHHHHHHHHHHHHHcCeEEEEEEccCCCcChHHHHHHHhcCCceEEEcCCCcchhhhHH
Confidence 99876532211 125788999999999999999999999999999999999999999999999999963
Q ss_pred -HHHHHHHHHHhhccCcceEEEEEeCCCeeEEEeecCCcccccccccccccCccccccccCCCCceEEEEEEEeccCCCC
Q 002851 505 -AFGVNLQRASTRAAGSHGFLEIRCSDDILVTQIVGPGEEAHIDTHETFKNDAALSIQMPSVEETQSFAVSMENKRDIES 583 (874)
Q Consensus 505 -~f~~dl~r~~~~~~g~~a~l~VR~S~glkV~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~s~~~~~~~~~~~~~ 583 (874)
+|..|+.+.+++++||+|+||||||+||+|++++|++.. ++.+.|+++++++++||+|+|++++.++.
T Consensus 538 ~kf~~dl~~~Lt~~~gf~a~mrVR~S~glkv~~~~G~~~~-----------~~s~~~~l~~l~~d~s~av~f~~~~~l~~ 606 (926)
T 1m2v_B 538 VKFSTEFAKHISMDFCMETVMRARGSTGLRMSRFYGHFFN-----------RSSDLCAFSTMPRDQSYLFEVNVDESIMA 606 (926)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEEEEECTTEEEEEEESSSBC-----------SSTTEEEEEEECSSCCEEEEEEECSBCCS
T ss_pred HHHHHHHHHHhhhhhceeEEEEEEeCCCcEEEEeecCccc-----------cCcCceEeeccCCCCEEEEEEEeccCCCC
Confidence 578899999999999999999999999999999997542 33457999999999999999999998877
Q ss_pred CceEEEEEEEEEecCCCEEEEEEeeeeccccchHHHHhhcCHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHH
Q 002851 584 NHVFFQFAIRYSNVYQADISRVVTVRLPTVDSVSAYLSSFQDEVAAVLIAKRTLLRAKIFSEAIDMRTMIDERVKDIALK 663 (874)
Q Consensus 584 ~~~~IQfal~Yt~~~G~rriRV~T~~l~vt~~~~~i~~s~D~ea~~~l~ak~av~~~~~~~~~~d~r~~Ld~~li~ll~~ 663 (874)
+.+|||||++||+.+|+|||||||++++|++++.++|++||+||++++|||+|++++++ +++.|+|+||+++|++++..
T Consensus 607 ~~~~~Q~allYT~~~G~RRiRV~T~~l~vt~~l~~v~~s~Dqea~~~llar~av~~~~~-~~~~d~r~~L~~~li~il~~ 685 (926)
T 1m2v_B 607 DYCYVQVAVLLSLNNSQRRIRIITLAMPTTESLAEVYASADQLAIASFYNSKAVEKALN-SSLDDARVLINKSVQDILAT 685 (926)
T ss_dssp SEEEEEEEEEEEETTTEEEEEEEEEEEEEESCHHHHHHTBCHHHHHHHHHHHHHHHHHH-SCSHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEEEEEcCCCCEEEEEEeecccccCCHHHHHHhcCHHHHHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999998 58999999999999999999
Q ss_pred hcccCCCC-----CccccchhhhHHHHHHHHhccCcCCCCCCCCc-hHHHHHHHHHhccCHHHHHHhhccceeeeccC--
Q 002851 664 FGSQVPKS-----KLYRFPKELSALSELLFHLRRSPLLGNIIGHD-DERSVLRNLFLNASFDLSLRMVAPRCLMYREG-- 735 (874)
Q Consensus 664 y~~~~~~~-----~~l~Lp~~l~llP~~~~~L~Rs~~l~~~~~sp-Dera~~~~~l~~~~v~~sl~miyP~L~~~~~~-- 735 (874)
||+.+... .+|+||++||+||+||||||||++|+ ++.+| |||+|++++++++++++++.||||+||+||+.
T Consensus 686 Yrk~~~~~~~~~~~sl~Lp~~lkllP~~~~~L~KS~~l~-~~~~p~Dera~~~~~l~~~~~~~l~~~iyP~L~s~h~~~~ 764 (926)
T 1m2v_B 686 YKKEIVVSNTAGGAPLRLCANLRMFPLLMHSLTKHMAFR-SGIVPSDHRASALNNLESLPLKYLIKNIYPDVYSLHDMAD 764 (926)
T ss_dssp HHHHTCCCTTSSSSCCEEEGGGTTHHHHHHHHHTSTTTC-SSCCCHHHHHHHHHHHHHSCHHHHHHHHSCEEEETTTCCS
T ss_pred HhhhcccccCCCCcccccCHHHHHHHHHHHHHhcchhhC-CCCCCccHHHHHHHHHHcCCHHHHHHhccCeEEEeccCcc
Confidence 99987642 35999999999999999999999999 77777 99999999999999999999999999999974
Q ss_pred --CCc---------------ccCCcccccccCCcEEEEeCCcEEEEEeCCcccccccc----------------------
Q 002851 736 --GTF---------------EELPAYDLAMQSDKAVVLDHGTDVFIWLGAELAADEGR---------------------- 776 (874)
Q Consensus 736 --~~~---------------~~lP~~~~sl~~d~iyLLD~g~~i~Iw~G~~v~~~~~~---------------------- 776 (874)
+.. .+++++...|+++++||||+|..|++|+|.+++++...
T Consensus 765 ~~g~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~g~yLld~G~~i~lWvG~~~~p~ll~dlFg~~~~~~i~~~~~~lp~l~ 844 (926)
T 1m2v_B 765 EAGLPVQTEDGEATGTIVLPQPINATSSLFERYGLYLIDNGNELFLWMGGDAVPALVFDVFGTQDIFDIPIGKQEIPVVE 844 (926)
T ss_dssp SCSCC---------CCCCCCCCBCSCSTTCCTTCEEEEECSSEEEEEECTTCCSGGGC----------------------
T ss_pred cccccccccccccccccccCCcccCcHHHhccCCEEEEECCCEEEEEecCCCCHHHHHHHhCCCchhhcCcccccCccCC
Confidence 211 12333556799999999999999999999999865421
Q ss_pred cHHHHHHHHHHHHHHHhcCC--CCcEEEEEecCCc-------------hH-HHHHHhhcCCCCCCcccccccccccccCC
Q 002851 777 SAAALAACRTLAEELSEFRF--PAPRILAFKEGSS-------------QA-RYFVTRLIPAHKDPPYEQEARFPQLRSLT 840 (874)
Q Consensus 777 ~~~~l~~~~~~~~~l~~~R~--p~Pr~i~~~qg~s-------------qa-Rfl~srL~ps~~~~~~~q~~~~~~~~~~~ 840 (874)
..++.++++++++.|++.|. .+|++++++|+.. .. -+|.+.|+|+.+.
T Consensus 845 ~~~~s~~lr~iI~~lr~~r~~~~~~~l~ivr~~~~~~~~~~~~~~~~~~~~~~f~~~LvED~~~---------------- 908 (926)
T 1m2v_B 845 NSEFNQRVRNIINQLRNHDDVITYQSLYIVRGASLSEPVNHASAREVATLRLWASSTLVEDKIL---------------- 908 (926)
T ss_dssp ---CHHHHHHHHHHTTCCSSCCCCCEEEEEC------------CCHHHHHHHHHHHTCTTSSCT----------------
T ss_pred CChHHHHHHHHHHHHHHhCCCCCCceEEEEecCCCCCccccccccchhhHHHHHHHhCeecCCC----------------
Confidence 12446789999999999986 5788999986533 12 3678999998652
Q ss_pred hHHHhhcccccccCCCchHHHHHHhcccC
Q 002851 841 PEERIKLKSSFLFFDDPSFCEWMRSLKVV 869 (874)
Q Consensus 841 ~~~~~~~~~~~i~TdD~Sl~~f~~~L~~~ 869 (874)
+..||.+|+.||++.
T Consensus 909 --------------~~~SY~dfL~~lh~~ 923 (926)
T 1m2v_B 909 --------------NNESYREFLQIMKAR 923 (926)
T ss_dssp --------------TCCCHHHHHHHHHHH
T ss_pred --------------CCCCHHHHHHHHHHH
Confidence 147899999999864
No 7
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=100.00 E-value=3.7e-122 Score=1121.78 Aligned_cols=656 Identities=15% Similarity=0.221 Sum_probs=555.4
Q ss_pred cccCCCCCCCCCeeeeecCccCCCHhhhhcCCCceEEEeccCCCCCC---CCccccC-CCccCCCCCcccccceEEEcCC
Q 002851 140 AAEETMPVGESSCVLFSAHKVLKKKKQANVPSLGFGALVSPGKEVSP---SLQIIQR-DPHRCHNCGAFANIYCKILLGS 215 (874)
Q Consensus 140 ~~~~~~~~~~~~~vR~T~n~~P~t~~~~~~~~lPlg~l~tPl~~~~~---~~p~v~~-~p~RC~~C~AylNP~~~~~~~~ 215 (874)
++..+..||+++|||+|||+||.|++++++++|||||+|+||++..+ .+|++.+ +|+||++|+|||||||+|+.+|
T Consensus 53 ~~~~d~~n~~p~~vR~T~n~iP~t~~~~~~~~lPlg~vv~P~~~~~~~~~~~pvv~~~~pvRC~~CrayiNPf~~~~~~g 132 (810)
T 1pcx_A 53 LVPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDGLIVRCRRCRSYMNPFVTFIEQG 132 (810)
T ss_dssp SSCSGGGSCCTTTEEESBSSEESSHHHHHHHTCCCEEEECSCCSSSTTSSCCCEECSCCCCBCTTTCCBCCTTCEEETTT
T ss_pred cccccCCCCCCCceeeecccCCCCHHHHHhCCCCeEEEEecCCccccCCCCCCccCCCCCCccCCccCEecCceEEeCCC
Confidence 34446779999999999999999999999999999999999997632 3566665 4999999999999999999999
Q ss_pred ceEEEccCCCccCCCccccCC---CccccCCCCCCCCCceEEEecCCCCCCCCCCCCCCCCCcEEEEEECCCCh---hHH
Q 002851 216 GQWQCVICRNLNGSEGEYVAP---SKEELRNFPELSSPMVDYVQTGNNRSSYVPVSDSRMSAPIILVIDECLDE---PHL 289 (874)
Q Consensus 216 ~~W~C~fC~~~N~~p~~Y~~~---~~~d~~~~PEL~~~tvEy~~p~~~r~~~~p~~~~~~~p~~vFvID~s~~~---~~l 289 (874)
++|+||||++.|++|++|+.. .+.|+.+||||+++||||+++.+|... ...+|.||||||+|.++ +.+
T Consensus 133 ~~W~C~~C~~~N~~P~~y~~~~~~~~~d~~~RpEL~~~tvEy~~p~~y~~~------~p~pp~yvFvIDvs~~av~~g~l 206 (810)
T 1pcx_A 133 RRWRCNFCRLANDVPMQMDQSDPNDPKSRYDRNEIKCAVMEYMAPKEYTLR------QPPPATYCFLIDVSQSSIKSGLL 206 (810)
T ss_dssp TEEECTTTCCEEECCGGGGC-----CCCGGGSHHHHCSEEEEECCGGGCSS------CCCCCEEEEEEECSHHHHHHTHH
T ss_pred CEEEccCCCCcCCCchhhccccccCccccccCccccCceEEEEcCchhccC------CCCCcEEEEEEECChHHHhhhHH
Confidence 999999999999999999821 355788999999999999999987211 12567789999999864 568
Q ss_pred HHHHHHHHHhhhcCCC---CcEEEEEEECceEEEEecCCCCc--------ceeccccCCCCCCHHHHHHHhhcCCccccc
Q 002851 290 QHLQSSLHAFVESIPP---TARIGIILYGRTVSVYDFSEDSI--------ASSDVLAGDKLPTEDSLKALLYGTGVYLSP 358 (874)
Q Consensus 290 ~~l~~sL~~~L~~Lp~---~a~VGlITFd~~V~vy~l~~~~~--------~~~~V~~g~~~~~~~~l~~~l~~~~~fL~p 358 (874)
+++|++|+++|+.||+ +++|||||||++||||+++.+.. ..+.++++..++- ++ ...+||+|
T Consensus 207 ~~~~~si~~~L~~Lp~~~~~~~VGlITfd~~V~~~~l~~~~~g~k~~~~q~~mlvv~dl~d~f------~P-~~~~~Lv~ 279 (810)
T 1pcx_A 207 ATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINMMDIADLEEPF------LP-RPNSMVVS 279 (810)
T ss_dssp HHHHHHHHHHTTTSCCTTSCCEEEEEEESSSEEEEECCCGGGC-------CEEECCCCTTCC------------TTTSEE
T ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEecCccccCccccccchhhcccccccccc------CC-Cccccccc
Confidence 9999999999999996 79999999999999999986432 3344544322210 01 12568999
Q ss_pred hhhhHHHHHHHHHhhcCCccccccCCC-CCchHHHHHHHHHHhcCCCccccccccccCCCCcEEEEEecCCCCCCCCccc
Q 002851 359 MHASKQVAHDIFSSLRPYKLNITEASR-DRCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRIIVCAGGPNTYGPGSVP 437 (874)
Q Consensus 359 l~e~~~~i~~lLe~L~~~~~~~~~~~r-~rc~G~AL~vA~~lL~~~~~~~~~~~~~~~~~ggrIi~F~sGppT~GpG~l~ 437 (874)
++||++.|+++|++|+.++.+ .++ .||+|+||++|..+|+. .||||++|++|+||.|||+|+
T Consensus 280 l~e~~~~i~~lL~~L~~~~~~---~~~~~~a~G~AL~~A~~lL~~--------------~GGrI~~F~sg~pt~GpG~l~ 342 (810)
T 1pcx_A 280 LKACRQNIETLLTKIPQIFQS---NLITNFALGPALKSAYHLIGG--------------VGGKIIVVSGTLPNLGIGKLQ 342 (810)
T ss_dssp TTTTHHHHHHHHHHHHHHTTT---CCCCCCCHHHHHHHHHHHHTT--------------TCEEEEEEESSCCCSSTTCCC
T ss_pred HHHHHHHHHHHHHhhhhhccC---CCCCCccHHHHHHHHHHHHHh--------------cCCEEEEEecCCCCCCCCccc
Confidence 999999999999999985433 334 49999999999999985 489999999999999999999
Q ss_pred CCCCCCCc-------hhhhHhHHHHHHHHHHHHhhcCeEEEEeeecCCCCCcccchhhhcccccEEEEcCChhh------
Q 002851 438 HSFSHPNY-------LHMEKMALKWMELLGRKAHQHNAVIDILCAGNCPVRVPVLQPLAKASGGVLVLHDDFGE------ 504 (874)
Q Consensus 438 ~~~~~~~~-------~~~ek~a~~fY~~La~~~~~~gisVDiF~~s~d~vglaem~~l~~~TGG~v~~~~~F~~------ 504 (874)
.+++++.. +++ +++.+||++||++|+++||+||+|+++.+|+|+++|+.|++.|||.+++|++|+.
T Consensus 343 ~r~~~~~~~~~ke~~~l~-~~a~~fY~~la~~~~~~gi~VDlF~~s~~~~dla~l~~l~~~TGG~v~~y~~F~~~~~~d~ 421 (810)
T 1pcx_A 343 RRNESGVVNTSKETAQLL-SCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPNDI 421 (810)
T ss_dssp C---------------------CCHHHHHHHHHHHTTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEEEETCCTTSHHHH
T ss_pred ccccccccCcccchhhhc-ccchHHHHHHHHHHHHCCeEEEEEEccCCccChHHHHHHHhcCCcEEEEcCCCcchhhHHH
Confidence 88654321 122 6789999999999999999999999999999999999999999999999999953
Q ss_pred -HHHHHHHHHHhhccCcceEEEEEeCCCeeEEEeecCCcccccccccccccCccccccccCCCCceEEEEEEEeccCCCC
Q 002851 505 -AFGVNLQRASTRAAGSHGFLEIRCSDDILVTQIVGPGEEAHIDTHETFKNDAALSIQMPSVEETQSFAVSMENKRDIES 583 (874)
Q Consensus 505 -~f~~dl~r~~~~~~g~~a~l~VR~S~glkV~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~s~~~~~~~~~~~~~ 583 (874)
+|..|+.+.+++++||+|+||||||+||+|++++||+.. ++.+.|++++++++++|+|+|++++.++.
T Consensus 422 ~~f~~dl~~~l~~~~gf~a~mrVR~S~gl~v~~~~G~~~~-----------~~~~~~~l~~~~~d~s~~v~f~~~~~l~~ 490 (810)
T 1pcx_A 422 VKFSTEFAKHISMDFCMETVMRARGSTGLRMSRFYGHFFN-----------RSSDLCAFSTMPRDQSYLFEVNVDESIMA 490 (810)
T ss_dssp HHHHHHHHHHHHCCCCEEEEEEEEECTTEEEEEEESSSBC-----------SSSSEEEESSCCSSCCEEEEEEECSCCCS
T ss_pred HHHHHHHHHHhhhhcceeEEEEEEcCCCeEEEEeecCccc-----------cCcCceEeecCCCCCEEEEEEEeccCCCC
Confidence 588899999999999999999999999999999997543 23457999999999999999999998877
Q ss_pred CceEEEEEEEEEecCCCEEEEEEeeeeccccchHHHHhhcCHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHH
Q 002851 584 NHVFFQFAIRYSNVYQADISRVVTVRLPTVDSVSAYLSSFQDEVAAVLIAKRTLLRAKIFSEAIDMRTMIDERVKDIALK 663 (874)
Q Consensus 584 ~~~~IQfal~Yt~~~G~rriRV~T~~l~vt~~~~~i~~s~D~ea~~~l~ak~av~~~~~~~~~~d~r~~Ld~~li~ll~~ 663 (874)
+.+|||||++||+.+|+|||||||++++|++++.++|++|||||++++|||+|++++++ +++.|+|+||+++|++++..
T Consensus 491 ~~~~~Q~allYt~~~G~RRiRV~T~~~~vt~~~~~v~~~~Dqea~~~llar~av~~~~~-~~~~d~r~~l~~~li~il~~ 569 (810)
T 1pcx_A 491 DYCYVQVAVLLSLNNSQRRIRIITLAMPTTESLAEVYASADQLAIASFYNSKAVEKALN-SSLDDARVLINKSVQDILAT 569 (810)
T ss_dssp SEEEEEEEEEEECTTSCEEEEEEEEEEEEESCHHHHHHTBCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEEEEEcCCCCEEEEEEecCccccCCHHHHHHhcCHHHHHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999998 58999999999999999999
Q ss_pred hcccCCC-----CCccccchhhhHHHHHHHHhccCcCCCCCCCCc-hHHHHHHHHHhccCHHHHHHhhccceeeeccC--
Q 002851 664 FGSQVPK-----SKLYRFPKELSALSELLFHLRRSPLLGNIIGHD-DERSVLRNLFLNASFDLSLRMVAPRCLMYREG-- 735 (874)
Q Consensus 664 y~~~~~~-----~~~l~Lp~~l~llP~~~~~L~Rs~~l~~~~~sp-Dera~~~~~l~~~~v~~sl~miyP~L~~~~~~-- 735 (874)
||+.+.. ..+|+||++||+||+||||||||++|+ ++.+| |||+|++++++++++.+++.||||+||+||+.
T Consensus 570 Yrk~~~~~~~~~~~~l~lp~~lkllP~~~~~L~ks~~l~-~~~~p~Der~~~~~~l~~~~~~~~~~~iyP~L~~~~~~~~ 648 (810)
T 1pcx_A 570 YKKEIVVSNTAGGAPLRLCANLRMFPLLMHSLTKHMAFR-SGIVPSDHRASALNNLESLPLKYLIKNIYPDVYSLHDMAD 648 (810)
T ss_dssp HHHHCC----CCSSCCEEEGGGTTHHHHHHHHHTSTTTC-SSCCCHHHHHHHHHHHHHSCHHHHHHHHSCEEEECTTCCS
T ss_pred HhhhcccccCCCCcccccCHHHHHHHHHHHHHhcchhcC-CCCCCccHHHHHHHHHHcCCHHHHHHhccCEEEEeccCcc
Confidence 9998753 235999999999999999999999999 77777 99999999999999999999999999999974
Q ss_pred --CCc---------------ccCCcccccccCCcEEEEeCCcEEEEEeCCccccccc---------------------c-
Q 002851 736 --GTF---------------EELPAYDLAMQSDKAVVLDHGTDVFIWLGAELAADEG---------------------R- 776 (874)
Q Consensus 736 --~~~---------------~~lP~~~~sl~~d~iyLLD~g~~i~Iw~G~~v~~~~~---------------------~- 776 (874)
+.+ .+++++...|+++++||||+|+.|++|+|.+++++.. .
T Consensus 649 ~~g~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~g~yLld~G~~i~lwvg~~~~~~l~~~lFg~~~~~~~~~~~~~lp~~~ 728 (810)
T 1pcx_A 649 EAGLPVQTEDGEATGTIVLPQPINATSSLFERYGLYLIDNGNELFLWMGGDAVPALVFDVFGTQDIFDIPIGKQEIPVVE 728 (810)
T ss_dssp STTSBC--------CCBCCCCBCCSSTTSCCTTCEEEEECSSEEEEEECTTCCHHHHHHHHSCSCGGGSCCEECCCCCCS
T ss_pred cccccccccccccccccccCCcccCCHHHhCcCCEEEEECCCEEEEEeCCCCCHHHHHHHhCCCchhhcCcccccCCcCC
Confidence 211 1233355679999999999999999999999875321 1
Q ss_pred cHHHHHHHHHHHHHHHhcCC--CCcEEEEEecCCch-------------H-HHHHHhhcCCCCCCcccccccccccccCC
Q 002851 777 SAAALAACRTLAEELSEFRF--PAPRILAFKEGSSQ-------------A-RYFVTRLIPAHKDPPYEQEARFPQLRSLT 840 (874)
Q Consensus 777 ~~~~l~~~~~~~~~l~~~R~--p~Pr~i~~~qg~sq-------------a-Rfl~srL~ps~~~~~~~q~~~~~~~~~~~ 840 (874)
..++.++++++++.|++.|. .+|++++++||... . -+|.+.|+++.+.
T Consensus 729 ~~~~~~~l~~iI~~lr~~r~~~~~~~l~ivr~~~~~~~~~~~~~~~~~~~~~~f~~~LvED~~~---------------- 792 (810)
T 1pcx_A 729 NSEFNQRVRNIINQLRNHDDVITYQSLYIVRGASLSEPVNHASAREVATLRLWASSTLVEDKIL---------------- 792 (810)
T ss_dssp SCHHHHHHHHHHHHHHCCSSCCCCCEEEEEECCCTTCCCCHHHHHHHHHHHHHHHTTCTTSCBT----------------
T ss_pred CChHHHHHHHHHHHHHHhCCCCCCceEEEEecCCCCCccccccccchhhHHHHHHHhCeecCCC----------------
Confidence 34678899999999999986 67889999876431 2 3677899998652
Q ss_pred hHHHhhcccccccCCCchHHHHHHhcccC
Q 002851 841 PEERIKLKSSFLFFDDPSFCEWMRSLKVV 869 (874)
Q Consensus 841 ~~~~~~~~~~~i~TdD~Sl~~f~~~L~~~ 869 (874)
+..||.+|+.||++.
T Consensus 793 --------------~~~SY~~fL~~lh~~ 807 (810)
T 1pcx_A 793 --------------NNESYREFLQIMKAR 807 (810)
T ss_dssp --------------TBCCHHHHHHHHHHH
T ss_pred --------------CCCCHHHHHHHHHHH
Confidence 146899999999874
No 8
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=99.59 E-value=3.4e-16 Score=127.11 Aligned_cols=50 Identities=24% Similarity=0.504 Sum_probs=45.6
Q ss_pred ccCCCccCCC--CCcccccceEEEcCCceEEEccCCCccCCCccccCCCccc
Q 002851 191 IQRDPHRCHN--CGAFANIYCKILLGSGQWQCVICRNLNGSEGEYVAPSKEE 240 (874)
Q Consensus 191 v~~~p~RC~~--C~AylNP~~~~~~~~~~W~C~fC~~~N~~p~~Y~~~~~~d 240 (874)
.+++|+||++ |+|||||||+||.++++|+|+||+++|++|++|+.++..+
T Consensus 5 ~~~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~N~~P~~Y~~is~~n 56 (59)
T 2yrc_A 5 SSGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELN 56 (59)
T ss_dssp SCCCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCEEECCSCCSSCHHHH
T ss_pred CCCCCcccCCCCCCeEECCceEEECCCCEEEcccCCCcCCCCHHHhccCccc
Confidence 4689999999 9999999999999999999999999999999998765443
No 9
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=99.21 E-value=1.7e-08 Score=116.21 Aligned_cols=309 Identities=11% Similarity=0.047 Sum_probs=188.1
Q ss_pred EEEEEECCCC----hhHHHHHHHHHHHhhhcCCCCcEEEEEEECceEEEE-ecCCCCcceeccccCCCCCCHHHHHHHhh
Q 002851 276 IILVIDECLD----EPHLQHLQSSLHAFVESIPPTARIGIILYGRTVSVY-DFSEDSIASSDVLAGDKLPTEDSLKALLY 350 (874)
Q Consensus 276 ~vFvID~s~~----~~~l~~l~~sL~~~L~~Lp~~a~VGlITFd~~V~vy-~l~~~~~~~~~V~~g~~~~~~~~l~~~l~ 350 (874)
++||||+|.+ ...++.+|+++...++.|+++.+||||+|++.++.+ .+..... ..+
T Consensus 80 vv~VLD~SGSM~~~~~rl~~ak~a~~~ll~~L~~~drv~lV~Fs~~a~~~~p~t~~l~----------~~~--------- 140 (464)
T 4fx5_A 80 EVIIIDCSGSMDYPRTKMMAAKEATKVAIDTLTDGAFFAVVAGTEGARVVYPTGGQLL----------RAD--------- 140 (464)
T ss_dssp EEEEEECCGGGGTTTHHHHHHHHHHHHHHHHSCTTCEEEEEEESSSEEEEESSSSSCE----------ECS---------
T ss_pred EEEEEEcCcccCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEEcCceEEEecCCcccc----------cCC---------
Confidence 5999999975 346999999999999999999999999999987754 2211000 001
Q ss_pred cCCccccchhhhHHHHHHHHHhhcCCccccccCCCCCchHHHHHHHHHHhcCCCccccccccccCCCCcEEEEEecCCCC
Q 002851 351 GTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRIIVCAGGPNT 430 (874)
Q Consensus 351 ~~~~fL~pl~e~~~~i~~lLe~L~~~~~~~~~~~r~rc~G~AL~vA~~lL~~~~~~~~~~~~~~~~~ggrIi~F~sGppT 430 (874)
...+..+.+.|+.|... ..+.++.||..|..+|... .+....|++++.|.++
T Consensus 141 ---------~~~~~~l~~~I~~L~~~--------GgT~l~~aL~~A~~~l~~~-----------~~~~~~IILLTDG~~~ 192 (464)
T 4fx5_A 141 ---------YQSRAAAKEAVGRLHAN--------GGTAMGRWLAQAGRIFDTA-----------PSAIKHAILLTDGKDE 192 (464)
T ss_dssp ---------HHHHHHHHHHHHTCCCC--------SCCCHHHHHHHHHHHHTTC-----------TTSEEEEEEEESSCCT
T ss_pred ---------HHHHHHHHHHHHcCCCC--------CCCcHHHHHHHHHHHHhcC-----------CCCCCEEEEEcCCCCC
Confidence 12344455666666531 3478999999999999752 1234678888999876
Q ss_pred CCCCcccCCCCCCCchhhhHhHHHHHHHHHHHHhhcCeEEEEeeecCCCCCcccchhhhcccccEEEEcCChhh---HHH
Q 002851 431 YGPGSVPHSFSHPNYLHMEKMALKWMELLGRKAHQHNAVIDILCAGNCPVRVPVLQPLAKASGGVLVLHDDFGE---AFG 507 (874)
Q Consensus 431 ~GpG~l~~~~~~~~~~~~ek~a~~fY~~La~~~~~~gisVDiF~~s~d~vglaem~~l~~~TGG~v~~~~~F~~---~f~ 507 (874)
.+. . . ...+ +.+....++.|..|.++.+ .+-..|+.+++.|||..++.+++.+ .|.
T Consensus 193 ~~~------------~---~---~l~~--~~~a~~~~i~i~tiGiG~~-~d~~~L~~IA~~tgG~~~~v~d~~~L~~~f~ 251 (464)
T 4fx5_A 193 SET------------P---A---DLAR--AIQSSIGNFTADCRGIGED-WEPKELRKIADALLGTVGIIRDPATLAEDFR 251 (464)
T ss_dssp TSC------------H---H---HHHH--HHHHHTTTCEEEEEEESSS-SCHHHHHHHHHHTTCCEEEESSGGGHHHHHH
T ss_pred CCC------------h---H---HHHH--HHHHhcCCCeEEEEEeCCc-cCHHHHHHHHHhCCCEEEEcCCHHHHHHHHH
Confidence 421 0 0 0111 1223467888888887654 5778899999999999999988764 233
Q ss_pred HHHHHHHhhccCcceEEEEEeCCCeeEEEeec--CCcc-cccccccccccCccccccccCC-CCceEEEEEEEeccCCCC
Q 002851 508 VNLQRASTRAAGSHGFLEIRCSDDILVTQIVG--PGEE-AHIDTHETFKNDAALSIQMPSV-EETQSFAVSMENKRDIES 583 (874)
Q Consensus 508 ~dl~r~~~~~~g~~a~l~VR~S~glkV~~~~G--~~~~-~~~~~~~~~~~~~~~~~~~~~v-~~~~s~~~~~~~~~~~~~ 583 (874)
+.+.+ +.....-++.++|++..|+.+..+.. |... +... .........+.+.++.+ +....|-+++.+.....+
T Consensus 252 ~i~~~-~~s~~~~dv~l~l~~~~g~~v~~v~~v~P~~~~l~~~-~~~~~~~~~~~v~lG~l~~e~r~~lv~l~v~~~~~g 329 (464)
T 4fx5_A 252 EMTAK-SMGKEVADVALRLWAPKGATIRYVKQVSPNLADLSGM-RVPGDNPLTGDYPTGAWGAESREYHICVEVEPGNIG 329 (464)
T ss_dssp HHHHH-HHTCCEEEEEEEEECCTTCEEEEEEEEESBCEECGGG-CEECSSTTEEEEEEEEESSEEEEEEEEEECCCCCTT
T ss_pred HHHHH-hhchheeeeEEEEEeCCCcEEEEEEeecccccccCcc-cccCCCCcEEEEECCcCCCCeEEEEEEEEcCCCCCC
Confidence 33333 33456778999999999998875532 2111 1000 00000111345555555 234555666666554444
Q ss_pred CceE-EEEEEEEEecCCCEEEEEEeeeeccccchH-------HHHhhcCHHHHHHHHHHHHHHHhhccCCHHHHHHHHHH
Q 002851 584 NHVF-FQFAIRYSNVYQADISRVVTVRLPTVDSVS-------AYLSSFQDEVAAVLIAKRTLLRAKIFSEAIDMRTMIDE 655 (874)
Q Consensus 584 ~~~~-IQfal~Yt~~~G~rriRV~T~~l~vt~~~~-------~i~~s~D~ea~~~l~ak~av~~~~~~~~~~d~r~~Ld~ 655 (874)
...- .++.+.|.++.|++.+.=..+...|+.+.. +|.+...+-.++.++. ++...+.. .+...+.+.|.+
T Consensus 330 ~~~~~~~v~~~y~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~V~~~~~~~~~a~~~~-~a~~~~~~-gd~~~A~~~L~~ 407 (464)
T 4fx5_A 330 QEKLAGRVQLVAKDAGGATLLGEGKIRAVWTEDTDLSTRINGRVAHYTGQAEMAAAIQ-EGLDAQAA-GDLDTATARLGR 407 (464)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEEECSCHHHHSCCCHHHHHHHHHHHHHHHHH-HHHHHHHT-TCHHHHHHHHHH
T ss_pred ceeEEEEEEEEEcCCCccccccccceEEEEEccccccCCCCHHHHHHHHHHHHHHHHH-HHHHHHHc-CCHHHHHHHHHH
Confidence 4444 799999999988732222344555555432 3344433333333332 33334444 467777776655
Q ss_pred H
Q 002851 656 R 656 (874)
Q Consensus 656 ~ 656 (874)
.
T Consensus 408 A 408 (464)
T 4fx5_A 408 A 408 (464)
T ss_dssp H
T ss_pred H
Confidence 4
No 10
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=98.74 E-value=3e-07 Score=94.18 Aligned_cols=167 Identities=18% Similarity=0.299 Sum_probs=117.6
Q ss_pred CcEEEEEECCCCh-------hHHHHHHHHHHHhhhcCCCCcEEEEEEECceEEEEecCCCCcceeccccCCCCCCHHHHH
Q 002851 274 APIILVIDECLDE-------PHLQHLQSSLHAFVESIPPTARIGIILYGRTVSVYDFSEDSIASSDVLAGDKLPTEDSLK 346 (874)
Q Consensus 274 p~~vFvID~s~~~-------~~l~~l~~sL~~~L~~Lp~~a~VGlITFd~~V~vy~l~~~~~~~~~V~~g~~~~~~~~l~ 346 (874)
..++||||+|.+- ..++.+|+.+...++.++ +.+||||+|++.+++.-
T Consensus 12 ~~iv~vlD~SgSM~~~d~~~~r~~~ak~~~~~~~~~~~-~~~v~lv~F~~~~~~~~------------------------ 66 (218)
T 3ibs_A 12 VEVIIALDISNSMLAQDVQPSRLEKAKRLISRLVDELD-NDKVGMIVFAGDAFTQL------------------------ 66 (218)
T ss_dssp CEEEEEEECSGGGGCCSSSSCHHHHHHHHHHHHHHTCS-SCEEEEEEESSSEEEEE------------------------
T ss_pred CcEEEEEECCcCcccccCCcCHHHHHHHHHHHHHHhCC-CCeEEEEEECCCceEeC------------------------
Confidence 4579999999752 278999999999999997 78999999998765421
Q ss_pred HHhhcCCccccchhhhHHHHHHHHHhhcCCccccccCCCCCchHHHHHHHHHHhcCCCccccccccccCCCCcEEEEEec
Q 002851 347 ALLYGTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRIIVCAG 426 (874)
Q Consensus 347 ~~l~~~~~fL~pl~e~~~~i~~lLe~L~~~~~~~~~~~r~rc~G~AL~vA~~lL~~~~~~~~~~~~~~~~~ggrIi~F~s 426 (874)
|+......+..+|+.|..... ....+.++.||..|..++... .+....|++++.
T Consensus 67 -----------~~~~~~~~~~~~l~~l~~~~~----~~g~T~l~~al~~a~~~l~~~-----------~~~~~~ivllTD 120 (218)
T 3ibs_A 67 -----------PITSDYISAKMFLESISPSLI----SKQGTAIGEAINLATRSFTPQ-----------EGVGRAIIVITD 120 (218)
T ss_dssp -----------EEESCHHHHHHHHHTCCGGGC----CSCSCCHHHHHHHHHTTSCSC-----------SSCCEEEEEEEC
T ss_pred -----------CCCCCHHHHHHHHHhcCcccC----CCCCCcHHHHHHHHHHHHhhC-----------CCCCcEEEEEcC
Confidence 011112334456666654211 124588999999999998752 123568888899
Q ss_pred CCCCCCCCcccCCCCCCCchhhhHhHHHHHHHHHHHHhhcCeEEEEeeecCC------------------------CCCc
Q 002851 427 GPNTYGPGSVPHSFSHPNYLHMEKMALKWMELLGRKAHQHNAVIDILCAGNC------------------------PVRV 482 (874)
Q Consensus 427 GppT~GpG~l~~~~~~~~~~~~ek~a~~fY~~La~~~~~~gisVDiF~~s~d------------------------~vgl 482 (874)
|.++.| . ..+.++.+.+.||.|..+.++.+ ..+.
T Consensus 121 G~~~~~--~--------------------~~~~~~~~~~~~i~v~~igig~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~ 178 (218)
T 3ibs_A 121 GENHEG--G--------------------AVEAAKAAAEKGIQVSVLGVGMPEGAPIPVEGTNDYRRDREGNVIVTRLNE 178 (218)
T ss_dssp CTTCCS--C--------------------HHHHHHHHHTTTEEEEEEEESCTTCEECBCTTSSCBCBCTTSCBCEECCCH
T ss_pred CCCCCC--c--------------------HHHHHHHHHhcCCEEEEEEecCCCCCcccccCCCceeEcCCCCEeEecCCH
Confidence 987654 0 13456677889999999888764 4667
Q ss_pred ccchhhhcccccEEEEcCChhh---HHHHHHHHH
Q 002851 483 PVLQPLAKASGGVLVLHDDFGE---AFGVNLQRA 513 (874)
Q Consensus 483 aem~~l~~~TGG~v~~~~~F~~---~f~~dl~r~ 513 (874)
..|+.+|+.|||..+...+-.+ .+.+.+.++
T Consensus 179 ~~L~~iA~~~gG~~~~~~~~~~~~~~~~~~i~~l 212 (218)
T 3ibs_A 179 GMCQEIAKDGKGIYVRVDNSNSAQKAISQEISKM 212 (218)
T ss_dssp HHHHHHHHHTEEEEEEECSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCEEEECCCChHHHHHHHHHHHHh
Confidence 7899999999999988877322 344455443
No 11
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=98.49 E-value=4.5e-06 Score=84.90 Aligned_cols=169 Identities=10% Similarity=0.141 Sum_probs=108.3
Q ss_pred EEEEEECCCC--hhHHHHHHHHHHHhhhcCC---CCcEEEEEEECceEEEE-ecCCCCcceeccccCCCCCCHHHHHHHh
Q 002851 276 IILVIDECLD--EPHLQHLQSSLHAFVESIP---PTARIGIILYGRTVSVY-DFSEDSIASSDVLAGDKLPTEDSLKALL 349 (874)
Q Consensus 276 ~vFvID~s~~--~~~l~~l~~sL~~~L~~Lp---~~a~VGlITFd~~V~vy-~l~~~~~~~~~V~~g~~~~~~~~l~~~l 349 (874)
++||||.|.+ ...++.+|+.++..++.|. ++.+||+|+|++.+++. .+...
T Consensus 16 ivfvlD~SgSm~~~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~~~~~~~l~~~----------------------- 72 (202)
T 1ijb_A 16 LVFLLDGSSRLSEAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSHAYIGLKDR----------------------- 72 (202)
T ss_dssp EEEEEECBTTSCHHHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSEEEEECTTCC-----------------------
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHhcccCCCceEEEEEEECCCceEEEecCCC-----------------------
Confidence 6999999975 5678999999999999886 57899999999887642 22210
Q ss_pred hcCCccccchhhhHHHHHHHHHhhcCCccccccCCCCCchHHHHHHHHH-HhcCCCccccccccccCCCCcEEEEEecCC
Q 002851 350 YGTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALA-IIQGPSAEMSRGVVKRPGGNSRIIVCAGGP 428 (874)
Q Consensus 350 ~~~~~fL~pl~e~~~~i~~lLe~L~~~~~~~~~~~r~rc~G~AL~vA~~-lL~~~~~~~~~~~~~~~~~ggrIi~F~sGp 428 (874)
..+..+.+.|+.|+.. +...+.+|.||..|.. ++.... +.+..-.|++++.|.
T Consensus 73 -----------~~~~~~~~~i~~l~~~------gg~~T~~~~aL~~a~~~~~~~~~---------r~~~~~~iillTDG~ 126 (202)
T 1ijb_A 73 -----------KRPSELRRIASQVKYA------GSQVASTSEVLKYTLFQIFSKID---------RPEASRIALLLMASQ 126 (202)
T ss_dssp -----------CCHHHHHHHHHTCCCC------CBSCCCHHHHHHHHHHHTSSSCS---------CTTSEEEEEEEECCC
T ss_pred -----------CCHHHHHHHHHhCcCC------CCCcCcHHHHHHHHHHHHhccCC---------CCCCCeEEEEEccCC
Confidence 0122334456666531 1123789999999974 444210 112234577788887
Q ss_pred CCCCCCcccCCCCCCCchhhhHhHHHHHHHHHHHHhhcCeEEEEeeecCCCCCcccchhhhcc-cccEEEEcCChhh--H
Q 002851 429 NTYGPGSVPHSFSHPNYLHMEKMALKWMELLGRKAHQHNAVIDILCAGNCPVRVPVLQPLAKA-SGGVLVLHDDFGE--A 505 (874)
Q Consensus 429 pT~GpG~l~~~~~~~~~~~~ek~a~~fY~~La~~~~~~gisVDiF~~s~d~vglaem~~l~~~-TGG~v~~~~~F~~--~ 505 (874)
++.|. ... ..+.++++.+.||.|-.+..+. .++..+|..++.. +||.++..++|++ .
T Consensus 127 ~~~~~-----------~~~--------~~~~a~~l~~~gi~i~~igvG~-~~~~~~L~~iA~~~~~~~~~~~~~~~~L~~ 186 (202)
T 1ijb_A 127 EPQRM-----------SRN--------FVRYVQGLKKKKVIVIPVGIGP-HANLKQIRLIEKQAPENKAFVLSSVDELEQ 186 (202)
T ss_dssp CCGGG-----------CTT--------HHHHHHHHHHTTEEEEEEEEST-TSCHHHHHHHHHHCTTCCCEEESSGGGHHH
T ss_pred CCccc-----------hHH--------HHHHHHHHHHCCCEEEEEecCC-cCCHHHHHHHhCCCCcccEEEeCCHHHHHH
Confidence 65320 000 1234556667888666665553 4678899999985 6889999999875 3
Q ss_pred HHHHHHHH
Q 002851 506 FGVNLQRA 513 (874)
Q Consensus 506 f~~dl~r~ 513 (874)
+.+.+.+.
T Consensus 187 ~~~~i~~~ 194 (202)
T 1ijb_A 187 QRDEIVSY 194 (202)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
No 12
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.46 E-value=9.8e-07 Score=93.78 Aligned_cols=148 Identities=16% Similarity=0.181 Sum_probs=102.7
Q ss_pred cEEEEEECCCC--h-----hHHHHHHHHHHHhhhc---CCCCcEEEEEEECc-eEEEEecCCCCcceeccccCCCCCCHH
Q 002851 275 PIILVIDECLD--E-----PHLQHLQSSLHAFVES---IPPTARIGIILYGR-TVSVYDFSEDSIASSDVLAGDKLPTED 343 (874)
Q Consensus 275 ~~vFvID~s~~--~-----~~l~~l~~sL~~~L~~---Lp~~a~VGlITFd~-~V~vy~l~~~~~~~~~V~~g~~~~~~~ 343 (874)
.+|||||+|.+ + ..+++.|+++...++. +.+..+||||+|.. ...+.
T Consensus 5 AtViviD~S~SM~~~D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~~~vl---------------------- 62 (268)
T 4b4t_W 5 ATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVL---------------------- 62 (268)
T ss_dssp EEEEEECCSSTTSSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCEEE----------------------
T ss_pred eEEEEEECCHHHhCCCCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCcceec----------------------
Confidence 36999999964 2 3688888888777663 45678999999953 32222
Q ss_pred HHHHHhhcCCccccchhhhHHHHHHHHHhhcCCccccccCCCCCchHHHHHHHHHHhcCCCccccccccccCCCCcEEEE
Q 002851 344 SLKALLYGTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRIIV 423 (874)
Q Consensus 344 ~l~~~l~~~~~fL~pl~e~~~~i~~lLe~L~~~~~~~~~~~r~rc~G~AL~vA~~lL~~~~~~~~~~~~~~~~~ggrIi~ 423 (874)
.|+...+..|...|+.|+.. ..+.++.||+.|..+|++... .+..-||++
T Consensus 63 -------------~plT~D~~~il~aL~~l~~~--------G~T~l~~gL~~A~~aLk~~~~---------k~~~~rIIl 112 (268)
T 4b4t_W 63 -------------STFTAEFGKILAGLHDTQIE--------GKLHMATALQIAQLTLKHRQN---------KVQHQRIVA 112 (268)
T ss_dssp -------------EEEESCHHHHHHHHTTCCCC--------SCCCHHHHHHHHHHHHHTCSC---------TTSEEEEEE
T ss_pred -------------cCCcchHHHHHHHhhhcCcC--------CCCChHHHHHHHHHHHHhccc---------CCCceEEEE
Confidence 11122233445556666531 347899999999999987431 123458999
Q ss_pred EecCCCCCCCCcccCCCCCCCchhhhHhHHHHHHHHHHHHhhcCeEEEEeeecCCCCCcccchhhhccccc
Q 002851 424 CAGGPNTYGPGSVPHSFSHPNYLHMEKMALKWMELLGRKAHQHNAVIDILCAGNCPVRVPVLQPLAKASGG 494 (874)
Q Consensus 424 F~sGppT~GpG~l~~~~~~~~~~~~ek~a~~fY~~La~~~~~~gisVDiF~~s~d~vglaem~~l~~~TGG 494 (874)
|++|+-+. ..+-..++++++.++||.||++.++.+..+-..|..+++..+|
T Consensus 113 f~ds~~~~--------------------~~~~l~~lak~lkk~gI~v~vIgFG~~~~n~~kLe~l~~~~Ng 163 (268)
T 4b4t_W 113 FVCSPISD--------------------SRDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAAVNN 163 (268)
T ss_dssp EECSCCSS--------------------CHHHHHHHHHHHHHHTEEEEEEEESSCCSSCCHHHHHHHHHCS
T ss_pred EECCCCCC--------------------CHHHHHHHHHHHHHcCCEEEEEEeCCCccchHHHHHHHHHhcC
Confidence 99986431 0122467899999999999999999876677788888777655
No 13
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=98.32 E-value=1e-05 Score=81.87 Aligned_cols=170 Identities=15% Similarity=0.165 Sum_probs=107.7
Q ss_pred cEEEEEECCCChhHHHHHHHHHHHhhhcCC---CCcEEEEEEECceEEEE-ecCCCCcceeccccCCCCCCHHHHHHHhh
Q 002851 275 PIILVIDECLDEPHLQHLQSSLHAFVESIP---PTARIGIILYGRTVSVY-DFSEDSIASSDVLAGDKLPTEDSLKALLY 350 (874)
Q Consensus 275 ~~vFvID~s~~~~~l~~l~~sL~~~L~~Lp---~~a~VGlITFd~~V~vy-~l~~~~~~~~~V~~g~~~~~~~~l~~~l~ 350 (874)
-++||||+|.+-..++.+|+.+...++.+. ++.+||||+|++.+++. .+.. +
T Consensus 8 div~vlD~SgSm~~~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~~~~~~~l~~--------------~---------- 63 (200)
T 1v7p_C 8 DVVVVCDESNSIYPWDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPRVVFNLNT--------------Y---------- 63 (200)
T ss_dssp EEEEEEECCTTCCCHHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSEEEEECTTT--------------C----------
T ss_pred cEEEEEECCCCcccHHHHHHHHHHHHHhcCCCCCceEEEEEEECCCceEEEeCCC--------------c----------
Confidence 469999999864458899999999998885 68999999999887642 2210 0
Q ss_pred cCCccccchhhhHHHHHHHHHhhcCCccccccCCCCCchHHHHHHHHHH-hcCCCccccccccccCCCCcEEEEEecCCC
Q 002851 351 GTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALAI-IQGPSAEMSRGVVKRPGGNSRIIVCAGGPN 429 (874)
Q Consensus 351 ~~~~fL~pl~e~~~~i~~lLe~L~~~~~~~~~~~r~rc~G~AL~vA~~l-L~~~~~~~~~~~~~~~~~ggrIi~F~sGpp 429 (874)
..+..+.+.|+.|+.. +...+.+|.||..|... +.... + .+.+....|++++.|.+
T Consensus 64 ----------~~~~~~~~~i~~l~~~------~G~~T~~~~al~~a~~~~~~~~~-----g--~r~~~~~~ivllTDG~~ 120 (200)
T 1v7p_C 64 ----------KTKEEMIVATSQTSQY------GGDLTNTFGAIQYARKYAYSAAS-----G--GRRSATKVMVVVTDGES 120 (200)
T ss_dssp ----------SSHHHHHHHHHHCCCC------CCSCCCHHHHHHHHHHHTTSGGG-----T--CCTTSEEEEEEEESSCC
T ss_pred ----------CCHHHHHHHHHhhhcc------CCCCCcHHHHHHHHHHhhccccc-----C--CCCCCCeEEEEEccCCC
Confidence 0112233445555431 11247899999999985 43210 0 00112345888888987
Q ss_pred CCCCCcccCCCCCCCchhhhHhHHHHHHHHHHHHhhcCeEEEEeeecC----CCCC----cccchhhhcccccE-EEEcC
Q 002851 430 TYGPGSVPHSFSHPNYLHMEKMALKWMELLGRKAHQHNAVIDILCAGN----CPVR----VPVLQPLAKASGGV-LVLHD 500 (874)
Q Consensus 430 T~GpG~l~~~~~~~~~~~~ek~a~~fY~~La~~~~~~gisVDiF~~s~----d~vg----laem~~l~~~TGG~-v~~~~ 500 (874)
+.+. . .++.++++.+.||.|..+..+. ..++ ..+|+.++..|||. ++..+
T Consensus 121 ~~~~-------------~--------~~~~~~~~~~~gi~i~~igvg~~~~~~~~~~~~~~~~L~~iA~~~~g~~~~~~~ 179 (200)
T 1v7p_C 121 HDGS-------------M--------LKAVIDQCNHDNILRFGIAVLGYLNRNALDTKNLIKEIKAIASIPTERYFFNVS 179 (200)
T ss_dssp SCGG-------------G--------HHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEES
T ss_pred CCcc-------------c--------HHHHHHHHHHCCCEEEEEEecccccccccchhhHHHHHHHHhCCccHhcEEEcC
Confidence 5210 0 1345666778898877776632 3445 57799999999885 56777
Q ss_pred Chhh--HHHHHHHH
Q 002851 501 DFGE--AFGVNLQR 512 (874)
Q Consensus 501 ~F~~--~f~~dl~r 512 (874)
+|.+ .+...|.+
T Consensus 180 ~~~~l~~i~~~i~~ 193 (200)
T 1v7p_C 180 DEAALLEKAGTLGE 193 (200)
T ss_dssp SSGGGHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 7764 34444443
No 14
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.29 E-value=1.6e-05 Score=81.42 Aligned_cols=178 Identities=13% Similarity=0.157 Sum_probs=107.2
Q ss_pred CcEEEEEECCCC--hhHHHHHHHHHHHhhhcC---CCCcEEEEEEECceEEEE-ecCCCCcceeccccCCCCCCHHHHHH
Q 002851 274 APIILVIDECLD--EPHLQHLQSSLHAFVESI---PPTARIGIILYGRTVSVY-DFSEDSIASSDVLAGDKLPTEDSLKA 347 (874)
Q Consensus 274 p~~vFvID~s~~--~~~l~~l~~sL~~~L~~L---p~~a~VGlITFd~~V~vy-~l~~~~~~~~~V~~g~~~~~~~~l~~ 347 (874)
.-++||||+|.+ ...++.+++.+...++.| +.+.+||||+|++.+++. .+.
T Consensus 16 ~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~~~~~~~~~----------------------- 72 (223)
T 1q0p_A 16 MNIYLVLDGSDSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVS----------------------- 72 (223)
T ss_dssp EEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEEEEECTT-----------------------
T ss_pred eeEEEEEeCCCCCchHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCccceeeccc-----------------------
Confidence 346999999975 557888888888886654 567899999999887643 111
Q ss_pred HhhcCCccccchhhhHHHHHHHHHhhcCCccccccCCCCCchHHHHHHHHHHhcCCCccccccccccCCCCcEEEEEecC
Q 002851 348 LLYGTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRIIVCAGG 427 (874)
Q Consensus 348 ~l~~~~~fL~pl~e~~~~i~~lLe~L~~~~~~~~~~~r~rc~G~AL~vA~~lL~~~~~~~~~~~~~~~~~ggrIi~F~sG 427 (874)
.+....+..+.+.|+.|..... .....+.+|.||..|...|....... .... .+....|++++.|
T Consensus 73 ---------~~~~~~~~~~~~~i~~l~~~~~---~~~g~T~~~~aL~~a~~~l~~~~~~~-~~~~--~~~~~~iillTDG 137 (223)
T 1q0p_A 73 ---------EADSSNADWVTKQLNEINYEDH---KLKSGTNTKKALQAVYSMMSWPDDVP-PEGW--NRTRHVIILMTDG 137 (223)
T ss_dssp ---------SGGGGCHHHHHHHHHTCCTTSC---SCTTCCCHHHHHHHHHHHHCCTTSSC-CTTG--GGCEEEEEEEECS
T ss_pred ---------cCCCCCHHHHHHHHHhcccccc---cCCCCccHHHHHHHHHHHhhcccccc-cccc--ccCCeEEEEECCC
Confidence 0111223445566677664211 01245899999999999997421000 0000 0122357888899
Q ss_pred CCCCCCCcccCCCCCCCchhhhHhHHHHHHHH------HHHHhhcCeEEEEeeecCCCCCcccchhhhccccc--EEEEc
Q 002851 428 PNTYGPGSVPHSFSHPNYLHMEKMALKWMELL------GRKAHQHNAVIDILCAGNCPVRVPVLQPLAKASGG--VLVLH 499 (874)
Q Consensus 428 ppT~GpG~l~~~~~~~~~~~~ek~a~~fY~~L------a~~~~~~gisVDiF~~s~d~vglaem~~l~~~TGG--~v~~~ 499 (874)
.++.|.- + ..+.+-.+++ ++.+.+.|+.|..+.++. .++..+|..++..+|| .++..
T Consensus 138 ~~~~g~~-----------~---~~~~~~~~~~~~~~~~~~~~~~~~i~i~~igvG~-~~~~~~L~~iA~~~~G~~~~~~~ 202 (223)
T 1q0p_A 138 LHNMGGD-----------P---ITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGP-LVNQVNINALASKKDNEQHVFKV 202 (223)
T ss_dssp CCCSSSC-----------T---HHHHHHHHHHTTCSCBTTBCCGGGEEEEEEECSS-CCCHHHHHHHSCCCTTCCCEEET
T ss_pred CCCCCCC-----------h---HHHHHHHHHHHhhhhhhhhcccCCcEEEEEEecC-cCCHHHHHHHhcCCCCCceEEEc
Confidence 8876530 0 1111111222 123345667666666553 4678899999999999 88888
Q ss_pred CChhh
Q 002851 500 DDFGE 504 (874)
Q Consensus 500 ~~F~~ 504 (874)
+++.+
T Consensus 203 ~~~~~ 207 (223)
T 1q0p_A 203 KDMEN 207 (223)
T ss_dssp TC---
T ss_pred CCHHH
Confidence 87753
No 15
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=98.28 E-value=2.3e-05 Score=77.57 Aligned_cols=158 Identities=13% Similarity=0.180 Sum_probs=96.9
Q ss_pred cEEEEEECCCC--hhHHHHHHHHHHHhhhc-CCCCcEEEEEEECceEEEE-ecCCCCcceeccccCCCCCCHHHHHHHhh
Q 002851 275 PIILVIDECLD--EPHLQHLQSSLHAFVES-IPPTARIGIILYGRTVSVY-DFSEDSIASSDVLAGDKLPTEDSLKALLY 350 (874)
Q Consensus 275 ~~vFvID~s~~--~~~l~~l~~sL~~~L~~-Lp~~a~VGlITFd~~V~vy-~l~~~~~~~~~V~~g~~~~~~~~l~~~l~ 350 (874)
-++||||+|.+ .... ..++.++..+.. +.++.+||||+|++..+.. .+.
T Consensus 8 dvv~vlD~SgSM~~~~~-~~~~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~~~~-------------------------- 60 (182)
T 1shu_X 8 DLYFVLDKSGSVANNWI-EIYNFVQQLAERFVSPEMRLSFIVFSSQATIILPLT-------------------------- 60 (182)
T ss_dssp EEEEEEECSGGGGGGHH-HHHHHHHHHHHHCCCTTEEEEEEEESSSEEEEEEEE--------------------------
T ss_pred eEEEEEECCCCcccCHH-HHHHHHHHHHHHhcCCCceEEEEEeCCCceEEECCC--------------------------
Confidence 46999999975 2222 233333333332 3468999999999876642 111
Q ss_pred cCCccccchhhhHHHHHHHHHhhcCCccccccCCCCCchHHHHHHHHHHhcCCCccccccccccCCCCcEEEEEecCCCC
Q 002851 351 GTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRIIVCAGGPNT 430 (874)
Q Consensus 351 ~~~~fL~pl~e~~~~i~~lLe~L~~~~~~~~~~~r~rc~G~AL~vA~~lL~~~~~~~~~~~~~~~~~ggrIi~F~sGppT 430 (874)
..+..+...|+.|..... ...+.++.||..|...+.... +.+....|++++.|.++
T Consensus 61 ----------~~~~~~~~~l~~l~~~~~-----~g~T~~~~al~~a~~~l~~~~---------~~~~~~~iiliTDG~~~ 116 (182)
T 1shu_X 61 ----------GDRGKISKGLEDLKRVSP-----VGETYIHEGLKLANEQIQKAG---------GLKTSSIIIALTDGKLD 116 (182)
T ss_dssp ----------CCHHHHHHHHHHHHTCCC-----CSCCCHHHHHHHHHHHHHHHT---------GGGSCEEEEEEECCCCC
T ss_pred ----------CCHHHHHHHHHhcccCCC-----CCCchHHHHHHHHHHHHHhcc---------CCCCCeEEEEECCCCcC
Confidence 111233344555543211 135889999999999986411 01234678888888764
Q ss_pred CCCCcccCCCCCCCchhhhHhHHHHHHHHHHHHhhcCeEEEEeeecCCCCCcccchhhhcccccEEEEcCChhh
Q 002851 431 YGPGSVPHSFSHPNYLHMEKMALKWMELLGRKAHQHNAVIDILCAGNCPVRVPVLQPLAKASGGVLVLHDDFGE 504 (874)
Q Consensus 431 ~GpG~l~~~~~~~~~~~~ek~a~~fY~~La~~~~~~gisVDiF~~s~d~vglaem~~l~~~TGG~v~~~~~F~~ 504 (874)
.+ ........++.+.+.|+.|..+..+ ..+..+|..++..+||..+..++|.+
T Consensus 117 ~~-------------------~~~~~~~~~~~~~~~~i~i~~igvg--~~~~~~L~~ia~~~~~~~~~~~~~~~ 169 (182)
T 1shu_X 117 GL-------------------VPSYAEKEAKISRSLGASVYCVGVL--DFEQAQLERIADSKEQVFPVKGGFQA 169 (182)
T ss_dssp TT-------------------HHHHHHHHHHHHHHTTCEEEEEECS--SCCHHHHHHHSSSGGGEEESSSTTHH
T ss_pred CC-------------------CchhHHHHHHHHHhCCCEEEEEeCC--cCCHHHHHHHhCCCCceEEccCCHHH
Confidence 21 1112345667778888877777665 46788899999999886655546653
No 16
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=98.26 E-value=2.2e-05 Score=78.64 Aligned_cols=158 Identities=15% Similarity=0.285 Sum_probs=103.5
Q ss_pred cEEEEEECCCC--hhHHHHHHHHHHHhhhcCC---CCcEEEEEEECceEEEE-ecCCCCcceeccccCCCCCCHHHHHHH
Q 002851 275 PIILVIDECLD--EPHLQHLQSSLHAFVESIP---PTARIGIILYGRTVSVY-DFSEDSIASSDVLAGDKLPTEDSLKAL 348 (874)
Q Consensus 275 ~~vFvID~s~~--~~~l~~l~~sL~~~L~~Lp---~~a~VGlITFd~~V~vy-~l~~~~~~~~~V~~g~~~~~~~~l~~~ 348 (874)
-++||||.|.+ ...++.+|+.+...++.++ .+.+||||+|++.+++. .+.. .
T Consensus 7 div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~~~~~~~l~~-------------~--------- 64 (189)
T 1atz_A 7 DVILLLDGSSSFPASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITTIDVPWNV-------------V--------- 64 (189)
T ss_dssp EEEEEEECSSSSCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECTTC-------------C---------
T ss_pred eEEEEEeCCCCCChhhHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCcceEEEecCC-------------C---------
Confidence 46999999975 5679999999999998885 45899999999877642 2211 0
Q ss_pred hhcCCccccchhhhHHHHHHHHHhhcCCccccccCCCCCchHHHHHHHHHHhcCCCccccccccccCCCCcE-EEEEecC
Q 002851 349 LYGTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSR-IIVCAGG 427 (874)
Q Consensus 349 l~~~~~fL~pl~e~~~~i~~lLe~L~~~~~~~~~~~r~rc~G~AL~vA~~lL~~~~~~~~~~~~~~~~~ggr-Ii~F~sG 427 (874)
..+..+.+.|+.|+.. ...+.+|.||..|...+..... + .+. ...+ |+++++|
T Consensus 65 ------------~~~~~~~~~i~~l~~~-------~g~T~~~~aL~~a~~~l~~~~~----g--~r~-~~~~~vivltdg 118 (189)
T 1atz_A 65 ------------PEKAHLLSLVDVMQRE-------GGPSQIGDALGFAVRYLTSEMH----G--ARP-GASKAVVILVTD 118 (189)
T ss_dssp ------------CCHHHHHHHHHTCCCC-------CCCCCHHHHHHHHHHHHHSCCT----T--CCT-TSEEEEEEEECS
T ss_pred ------------CCHHHHHHHHHhCcCC-------CCcchHHHHHHHHHHHHhcccc----C--CCC-CCCcEEEEEeCC
Confidence 0122333455555431 1348999999999998854210 0 001 1235 6778877
Q ss_pred CCCCCCCcccCCCCCCCchhhhHhHHHHHHHHHHHHhhcCeEEEEeeecCCCCCcccchhhhccccc-EEEEcCChhh
Q 002851 428 PNTYGPGSVPHSFSHPNYLHMEKMALKWMELLGRKAHQHNAVIDILCAGNCPVRVPVLQPLAKASGG-VLVLHDDFGE 504 (874)
Q Consensus 428 ppT~GpG~l~~~~~~~~~~~~ek~a~~fY~~La~~~~~~gisVDiF~~s~d~vglaem~~l~~~TGG-~v~~~~~F~~ 504 (874)
..+.. ..+.++++.+.|+.|..+..+. .++..+|..++..++| .++..++|.+
T Consensus 119 ~~~~~-----------------------~~~~~~~~~~~gi~v~~igvG~-~~~~~~L~~iA~~~~~~~~~~~~~~~~ 172 (189)
T 1atz_A 119 VSVDS-----------------------VDAAADAARSNRVTVFPIGIGD-RYDAAQLRILAGPAGDSNVVKLQRIED 172 (189)
T ss_dssp CCSSC-----------------------CHHHHHHHHHTTEEEEEEEESS-SSCHHHHHHHTGGGGGGGCEEESSTTH
T ss_pred CCCch-----------------------HHHHHHHHHHCCCEEEEEEcCC-cCCHHHHHHHHCCCcccCEEEecChhh
Confidence 54311 0234556677888877777664 3677899999999876 5666666643
No 17
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=98.23 E-value=6.1e-06 Score=83.03 Aligned_cols=172 Identities=11% Similarity=0.180 Sum_probs=106.3
Q ss_pred cEEEEEECCCC--hhHHHHHHHHHHHhhhcC-CCCcEEEEEEECceEEEE-ecCCCCcceeccccCCCCCCHHHHHHHhh
Q 002851 275 PIILVIDECLD--EPHLQHLQSSLHAFVESI-PPTARIGIILYGRTVSVY-DFSEDSIASSDVLAGDKLPTEDSLKALLY 350 (874)
Q Consensus 275 ~~vFvID~s~~--~~~l~~l~~sL~~~L~~L-p~~a~VGlITFd~~V~vy-~l~~~~~~~~~V~~g~~~~~~~~l~~~l~ 350 (874)
-++||||.|.+ ...++.+++.++..++.| +++.+||||+|++.+++. .+. ..
T Consensus 7 div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~v~vv~f~~~~~~~~~l~-------------------~~----- 62 (194)
T 1mf7_A 7 DIAFLIDGSGSIIPHDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFRIHFTFK-------------------EF----- 62 (194)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHHHHHHHCCTTEEEEEEEESSSEEEEECHH-------------------HH-----
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCCceEEEecC-------------------Cc-----
Confidence 46999999875 557888999999888887 468999999999887542 110 00
Q ss_pred cCCccccchhhhHHHHHHHHHhhcCCccccccCCCCCchHHHHHHHHHHh-cCCCccccccccccCCCCcEEEEEecCCC
Q 002851 351 GTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALAII-QGPSAEMSRGVVKRPGGNSRIIVCAGGPN 429 (874)
Q Consensus 351 ~~~~fL~pl~e~~~~i~~lLe~L~~~~~~~~~~~r~rc~G~AL~vA~~lL-~~~~~~~~~~~~~~~~~ggrIi~F~sGpp 429 (874)
..+..+.+.|+.|+. ....+.+|.||..|...+ .... + .+.+....|++++.|.+
T Consensus 63 ----------~~~~~~~~~i~~l~~-------~~g~T~~~~aL~~a~~~l~~~~~-----~--~r~~~~~~iillTDG~~ 118 (194)
T 1mf7_A 63 ----------QNNPNPRSLVKPITQ-------LLGRTHTATGIRKVVRELFNITN-----G--ARKNAFKILVVITDGEK 118 (194)
T ss_dssp ----------HHSCCHHHHHTTCCC-------CCSCBCHHHHHHHHHHTTTSGGG-----T--CCTTSEEEEEEEESSCC
T ss_pred ----------CCHHHHHHHHHhCcC-------CCCCchHHHHHHHHHHHhcCccc-----C--CCCCCCeEEEEEcCCCC
Confidence 001112334555542 113588999999999644 3100 0 00112245888888988
Q ss_pred CCCCCcccCCCCCCCchhhhHhHHHHHHHHHHHHhhcCeEEEEeeecCCC---CCcccchhhhccc-ccEEEEcCChhh-
Q 002851 430 TYGPGSVPHSFSHPNYLHMEKMALKWMELLGRKAHQHNAVIDILCAGNCP---VRVPVLQPLAKAS-GGVLVLHDDFGE- 504 (874)
Q Consensus 430 T~GpG~l~~~~~~~~~~~~ek~a~~fY~~La~~~~~~gisVDiF~~s~d~---vglaem~~l~~~T-GG~v~~~~~F~~- 504 (874)
+..+- . +++.++++.+.||.|..+..+.+. .+..+|..++..+ +|.++..++|.+
T Consensus 119 ~~d~~---------~-----------~~~~~~~~~~~gi~v~~igvG~~~~~~~~~~~L~~iA~~~~~~~~~~~~~~~~l 178 (194)
T 1mf7_A 119 FGDPL---------G-----------YEDVIPEADREGVIRYVIGVGDAFRSEKSRQELNTIASKPPRDHVFQVNNFEAL 178 (194)
T ss_dssp BSCSS---------C-----------GGGTHHHHHHTTEEEEEEEESGGGCSHHHHHHHHHHSCSSHHHHEEEESSGGGG
T ss_pred CCCch---------h-----------hHHHHHHHHHCCCEEEEEEecccccccccHHHHHHHhCCCCcccEEEeCCHHHH
Confidence 71110 0 012345566788877777766542 1368899999986 588888888864
Q ss_pred -HHHHHHHHHH
Q 002851 505 -AFGVNLQRAS 514 (874)
Q Consensus 505 -~f~~dl~r~~ 514 (874)
.+...+.+.+
T Consensus 179 ~~~~~~i~~~i 189 (194)
T 1mf7_A 179 KTIQNQLREKI 189 (194)
T ss_dssp GGGHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 3444554433
No 18
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=98.22 E-value=1.4e-05 Score=80.48 Aligned_cols=172 Identities=12% Similarity=0.167 Sum_probs=108.3
Q ss_pred CcEEEEEECCCC--hhHHHHHHHHHHHhhhcC-CCCcEEEEEEECceEEEE-ecCCCCcceeccccCCCCCCHHHHHHHh
Q 002851 274 APIILVIDECLD--EPHLQHLQSSLHAFVESI-PPTARIGIILYGRTVSVY-DFSEDSIASSDVLAGDKLPTEDSLKALL 349 (874)
Q Consensus 274 p~~vFvID~s~~--~~~l~~l~~sL~~~L~~L-p~~a~VGlITFd~~V~vy-~l~~~~~~~~~V~~g~~~~~~~~l~~~l 349 (874)
.-++||||+|.+ ...++..++.++..++.| +++.+||||+|++.+++. .+. +..
T Consensus 10 ~div~vlD~SgSM~~~~~~~~~~~~~~~~~~l~~~~~~v~lv~f~~~~~~~~~~~-------------------~~~--- 67 (198)
T 1n3y_A 10 QDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFE-------------------EFR--- 67 (198)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHHHHHHTTSCTTTEEEEEEEESSSEEEEECHH-------------------HHH---
T ss_pred eeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCccEEEecC-------------------ccC---
Confidence 346999999875 456788899999999988 789999999999886542 110 000
Q ss_pred hcCCccccchhhhHHHHHHHHHhhcCCccccccCCCCCchHHHHHHHH-HHhcCCCccccccccccCCCCcEEEEEecCC
Q 002851 350 YGTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVAL-AIIQGPSAEMSRGVVKRPGGNSRIIVCAGGP 428 (874)
Q Consensus 350 ~~~~~fL~pl~e~~~~i~~lLe~L~~~~~~~~~~~r~rc~G~AL~vA~-~lL~~~~~~~~~~~~~~~~~ggrIi~F~sGp 428 (874)
.+..+.+.|+.|.. ....+.+|.||..|. .++.... +. +.+....|++++.|.
T Consensus 68 ------------~~~~~~~~i~~l~~-------~~g~T~~~~al~~a~~~l~~~~~-----~~--r~~~~~~iillTDG~ 121 (198)
T 1n3y_A 68 ------------RSSNPLSLLASVHQ-------LQGFTYTATAIQNVVHRLFHASY-----GA--RRDAAKILIVITDGK 121 (198)
T ss_dssp ------------HCSSGGGGGTTCCC-------CCSCBCHHHHHHHHHTTTTSGGG-----TC--CTTSEEEEEEEESSC
T ss_pred ------------CHHHHHHHHhcCcC-------CCCCchHHHHHHHHHHHHhCccc-----CC--CCCCceEEEEECCCC
Confidence 00001112333321 113588999999999 5544210 00 012235688889998
Q ss_pred CCCCCCcccCCCCCCCchhhhHhHHHHHHHHHHHHhhcCeEEEEeeecCCC---CCcccchhhhcccccEE-EEcCChhh
Q 002851 429 NTYGPGSVPHSFSHPNYLHMEKMALKWMELLGRKAHQHNAVIDILCAGNCP---VRVPVLQPLAKASGGVL-VLHDDFGE 504 (874)
Q Consensus 429 pT~GpG~l~~~~~~~~~~~~ek~a~~fY~~La~~~~~~gisVDiF~~s~d~---vglaem~~l~~~TGG~v-~~~~~F~~ 504 (874)
++.++- . +.+.++++.+.|+.|..+..+.+. .+..+|+.++..|||.. +..+++.+
T Consensus 122 ~~~~~~-----------~---------~~~~~~~~~~~gi~i~~igvG~~~~~~~~~~~L~~iA~~~~g~~~~~~~~~~~ 181 (198)
T 1n3y_A 122 KEGDSL-----------D---------YKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELNDIASKPSQEHIFKVEDFDA 181 (198)
T ss_dssp CBSCSS-----------C---------HHHHHHHHHHTTCEEEEEEESGGGGSSTTHHHHHHHSCSSSGGGEEEESSGGG
T ss_pred CCCCcc-----------c---------HHHHHHHHHHCCCEEEEEEccccccccccHHHHHHHHcCCCcccEEEeCCHHH
Confidence 874321 0 134456677889988888776653 36789999999999964 66677754
Q ss_pred --HHHHHHHHH
Q 002851 505 --AFGVNLQRA 513 (874)
Q Consensus 505 --~f~~dl~r~ 513 (874)
.+.+.+.+.
T Consensus 182 l~~~~~~i~~~ 192 (198)
T 1n3y_A 182 LKDIQNQLKEK 192 (198)
T ss_dssp GGGGHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 233444443
No 19
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=98.21 E-value=2e-05 Score=91.39 Aligned_cols=188 Identities=13% Similarity=0.109 Sum_probs=113.2
Q ss_pred CcEEEEEECCCC--hhHHHHHHHHHHHhhhcC---CCCcEEEEEEECceEEEE-ecCCCCcceeccccCCCCCCHHHHHH
Q 002851 274 APIILVIDECLD--EPHLQHLQSSLHAFVESI---PPTARIGIILYGRTVSVY-DFSEDSIASSDVLAGDKLPTEDSLKA 347 (874)
Q Consensus 274 p~~vFvID~s~~--~~~l~~l~~sL~~~L~~L---p~~a~VGlITFd~~V~vy-~l~~~~~~~~~V~~g~~~~~~~~l~~ 347 (874)
.-++||||.|.+ ...++.+|+.+...++.| +++.+||||+|++.+++. .+..
T Consensus 10 ~divfvlD~SgSM~~~~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~~~~~~~l~~---------------------- 67 (509)
T 2odp_A 10 LNLYLLLDASQSVSENDFLIFKESASLMVDRIFSFEINVSVAIITFASEPKVLMSVLN---------------------- 67 (509)
T ss_dssp EEEEEEEECSTTSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSSEEEEECTTS----------------------
T ss_pred eeEEEEEeCCCccchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccCCCceeEeccC----------------------
Confidence 346999999975 567899999999998877 789999999999877652 1110
Q ss_pred HhhcCCccccchhhhHHHHHHHHHhhcCCccccccCCCCCchHHHHHHHHHHhcCCCccccc--cccccCCCCcEEEEEe
Q 002851 348 LLYGTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALAIIQGPSAEMSR--GVVKRPGGNSRIIVCA 425 (874)
Q Consensus 348 ~l~~~~~fL~pl~e~~~~i~~lLe~L~~~~~~~~~~~r~rc~G~AL~vA~~lL~~~~~~~~~--~~~~~~~~ggrIi~F~ 425 (874)
+....+..+.+.|+.|+....+ ....+.++.||..|..+|......... +.. .+....|++++
T Consensus 68 ----------~~~~~~~~~~~~l~~l~~~~~~---~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~--~~~~~~iillT 132 (509)
T 2odp_A 68 ----------DNSRDMTEVISSLENANYKDHE---NGTGTNTYAALNSVYLMMNNQMRLLGMETMAW--QEIRHAIILLT 132 (509)
T ss_dssp ----------GGGGCHHHHHHHHHTCCGGGGT---TCCSCCHHHHHHHHHHHHHHHHHHHCTTSHHH--HTEEEEEEEES
T ss_pred ----------CCCCCHHHHHHHHHhcccccCC---CCCCccHHHHHHHHHHHHhhcccccccccccc--cccceEEEEEC
Confidence 0011233444556666542111 124589999999999998431000000 000 00113578888
Q ss_pred cCCCCCCCCcccCCCCCCCchhhhHhHHHHHHHHHH--HHhhcCeEEEEeeecCCCCCcccchhhhcccccE--EEEcCC
Q 002851 426 GGPNTYGPGSVPHSFSHPNYLHMEKMALKWMELLGR--KAHQHNAVIDILCAGNCPVRVPVLQPLAKASGGV--LVLHDD 501 (874)
Q Consensus 426 sGppT~GpG~l~~~~~~~~~~~~ek~a~~fY~~La~--~~~~~gisVDiF~~s~d~vglaem~~l~~~TGG~--v~~~~~ 501 (874)
.|..+.|. .. ..+.+-.+++.. +..+.|+.|..+..+.+.++..+|..++..+||. ++..++
T Consensus 133 DG~~~~~~-~~-------------~~~~~~~~~~~~~~~~~~~~i~i~~iGvG~~~~~~~~L~~iA~~~~G~~~~~~~~~ 198 (509)
T 2odp_A 133 DGKSNMGG-SP-------------KTAVDHIREILNINQKRNDYLDIYAIGVGKLDVDWRELNELGSKKDGERHAFILQD 198 (509)
T ss_dssp CSCCCSSS-CT-------------HHHHHHHHHHTTCCSTTGGGEEEEEEEESSSCCCHHHHHHHSCCCTTCCCEEEESS
T ss_pred CCCccCCC-Ch-------------hHHHHHHHHHhhccccccCceEEEEEEcCCCcccHHHHHhhccCCCCceeeEEecC
Confidence 99887651 10 111111111100 1125677777776665548899999999999998 777788
Q ss_pred hhhHHHHHHHHH
Q 002851 502 FGEAFGVNLQRA 513 (874)
Q Consensus 502 F~~~f~~dl~r~ 513 (874)
+++ +.+-+.++
T Consensus 199 ~~~-l~~~~~~i 209 (509)
T 2odp_A 199 TKA-LHQVFEHM 209 (509)
T ss_dssp HHH-HHHHHHHH
T ss_pred HHH-HHHHHHhh
Confidence 753 33333343
No 20
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=98.12 E-value=1.8e-05 Score=81.60 Aligned_cols=162 Identities=12% Similarity=0.147 Sum_probs=104.6
Q ss_pred cEEEEEECCCChhHHHHHHHHHHHhhhcCC---CCcEEEEEEECceEEEE-ecCCCCcceeccccCCCCCCHHHHHHHhh
Q 002851 275 PIILVIDECLDEPHLQHLQSSLHAFVESIP---PTARIGIILYGRTVSVY-DFSEDSIASSDVLAGDKLPTEDSLKALLY 350 (874)
Q Consensus 275 ~~vFvID~s~~~~~l~~l~~sL~~~L~~Lp---~~a~VGlITFd~~V~vy-~l~~~~~~~~~V~~g~~~~~~~~l~~~l~ 350 (874)
-++||||+|.+-..++.+|+.+...++.|. ++.+||||+|++.+++. .+.. +
T Consensus 24 div~vlD~SgSM~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~~~~~~~l~~--------------~---------- 79 (223)
T 2b2x_A 24 DIVIVLDGSNSIYPWESVIAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLNK--------------Y---------- 79 (223)
T ss_dssp EEEEEEECSTTCCCHHHHHHHHHHHHTTSCCSTTSCCEEEEEESSSEEEEECTTT--------------C----------
T ss_pred eEEEEEECCCChhhHHHHHHHHHHHHHhcccCCCCeEEEEEEeCCCccEEEecCC--------------C----------
Confidence 369999999875568899999999998874 78999999999887642 2210 0
Q ss_pred cCCccccchhhhHHHHHHHHHhhcCCccccccCCCCCchHHHHHHHHHHh-cCCCccccccccccCCCCcEEEEEecCCC
Q 002851 351 GTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALAII-QGPSAEMSRGVVKRPGGNSRIIVCAGGPN 429 (874)
Q Consensus 351 ~~~~fL~pl~e~~~~i~~lLe~L~~~~~~~~~~~r~rc~G~AL~vA~~lL-~~~~~~~~~~~~~~~~~ggrIi~F~sGpp 429 (874)
..+..+.+.|+.|... +...+.+|.||..|...+ .... + .+.+....|++++.|.+
T Consensus 80 ----------~~~~~~~~~i~~l~~~------gG~~T~~~~aL~~a~~~l~~~~~-----~--~~~~~~~~iillTDG~~ 136 (223)
T 2b2x_A 80 ----------SSTEEVLVAANKIVQR------GGRQTMTALGIDTARKEAFTEAR-----G--ARRGVKKVMVIVTDGES 136 (223)
T ss_dssp ----------CSHHHHHHHHTTCCCC------CCSSCCHHHHHHHHHHTTSSGGG-----T--CCTTSEEEEEEEESSCC
T ss_pred ----------CCHHHHHHHHHhhhcc------CCCCccHHHHHHHHHHHhcCccc-----C--CCCCCCeEEEEEcCCCC
Confidence 0011122334444321 112478999999999874 3100 0 00122345788888887
Q ss_pred CCCCCcccCCCCCCCchhhhHhHHHHHHHHHHHHhhcCeEEEEeeecCCCC----C----cccchhhhcc-cccEEEEcC
Q 002851 430 TYGPGSVPHSFSHPNYLHMEKMALKWMELLGRKAHQHNAVIDILCAGNCPV----R----VPVLQPLAKA-SGGVLVLHD 500 (874)
Q Consensus 430 T~GpG~l~~~~~~~~~~~~ek~a~~fY~~La~~~~~~gisVDiF~~s~d~v----g----laem~~l~~~-TGG~v~~~~ 500 (874)
+.|. . ....++++.+.||.|..+..+.+.- + ..+|+.++.. |||.++..+
T Consensus 137 ~~~~-------------~--------~~~~~~~~~~~gi~v~~igvG~~~~~~~~~~~~~~~~L~~iA~~p~~g~~~~~~ 195 (223)
T 2b2x_A 137 HDNY-------------R--------LKQVIQDCEDENIQRFSIAILGHYNRGNLSTEKFVEEIKSIASEPTEKHFFNVS 195 (223)
T ss_dssp TTGG-------------G--------HHHHHHHHHTTTEEEEEEEECGGGC---CCCHHHHHHHHTTSCSSGGGTEEEES
T ss_pred CCCc-------------c--------HHHHHHHHHHCCCEEEEEEecCccccccccchhHHHHHHHHhCCCchhcEEEeC
Confidence 6431 0 2345667778898877777654321 0 3789999998 999999988
Q ss_pred Chhh
Q 002851 501 DFGE 504 (874)
Q Consensus 501 ~F~~ 504 (874)
++++
T Consensus 196 ~~~~ 199 (223)
T 2b2x_A 196 DELA 199 (223)
T ss_dssp STTG
T ss_pred CHHH
Confidence 8764
No 21
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=98.12 E-value=5.5e-05 Score=80.93 Aligned_cols=164 Identities=15% Similarity=0.149 Sum_probs=105.1
Q ss_pred cEEEEEECCCC--hhHH-HHHHHHHHHhhhcCCC---CcEEEEEEECceEEE-EecCCCCcceeccccCCCCCCHHHHHH
Q 002851 275 PIILVIDECLD--EPHL-QHLQSSLHAFVESIPP---TARIGIILYGRTVSV-YDFSEDSIASSDVLAGDKLPTEDSLKA 347 (874)
Q Consensus 275 ~~vFvID~s~~--~~~l-~~l~~sL~~~L~~Lp~---~a~VGlITFd~~V~v-y~l~~~~~~~~~V~~g~~~~~~~~l~~ 347 (874)
-++||||.|.+ ...+ +.+++.++..++.|.. +.+||||+|++.++. +.+... ...+
T Consensus 23 div~vlD~SgSM~~~~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~~~~~~l~~~-----------~~~~------ 85 (281)
T 4hqf_A 23 DLYLLMDGSGSIRRHNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNAREIIRLHSD-----------ASKN------ 85 (281)
T ss_dssp EEEEEEECCCCSSTHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTEEEEEEECSS-----------CSSC------
T ss_pred eEEEEEeCCCCcCHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCceEEEEcccc-----------CccC------
Confidence 36999999975 3344 8899999999998875 899999999987754 333321 0001
Q ss_pred HhhcCCccccchhhhHHHHHHHHHhhcCCccccccCCCCCchHHHHHHHHHHhcCCCccccccccccCCCCcEEEEEecC
Q 002851 348 LLYGTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRIIVCAGG 427 (874)
Q Consensus 348 ~l~~~~~fL~pl~e~~~~i~~lLe~L~~~~~~~~~~~r~rc~G~AL~vA~~lL~~~~~~~~~~~~~~~~~ggrIi~F~sG 427 (874)
+..+.+.|+.|+..... ...+.+|.||..|...+..... +.+....|++++.|
T Consensus 86 ---------------~~~l~~~i~~l~~~~~~----~G~T~~~~aL~~a~~~l~~~~~--------r~~~~~~iillTDG 138 (281)
T 4hqf_A 86 ---------------KEKALIIIKSLLSTNLP----YGKTSLTDALLQVRKHLNDRIN--------RENANQLVVILTDG 138 (281)
T ss_dssp ---------------HHHHHHHHHHHHHTTGG----GCSCCHHHHHHHHHHHHHTSCC--------CTTCEEEEEEEESS
T ss_pred ---------------HHHHHHHHHHHhhccCC----CCCccHHHHHHHHHHHHHhccC--------CCCCCEEEEEEecC
Confidence 12233445555431111 2358899999999888764210 01123457888888
Q ss_pred CCCCCCCcccCCCCCCCchhhhHhHHHHHHHHHHHHhhcCeEEEEeeecCCCCCcccchhhhcc--ccc--EEEEcCChh
Q 002851 428 PNTYGPGSVPHSFSHPNYLHMEKMALKWMELLGRKAHQHNAVIDILCAGNCPVRVPVLQPLAKA--SGG--VLVLHDDFG 503 (874)
Q Consensus 428 ppT~GpG~l~~~~~~~~~~~~ek~a~~fY~~La~~~~~~gisVDiF~~s~d~vglaem~~l~~~--TGG--~v~~~~~F~ 503 (874)
.++. + .-..+.++++.+.||.|-.+..+.+ ++-..|+.++.. +|| .++...+|+
T Consensus 139 ~~~d--------------~-------~~~~~~~~~l~~~gv~i~~igiG~~-~~~~~L~~iA~~~~~~g~~~~~~~~~~~ 196 (281)
T 4hqf_A 139 IPDS--------------I-------QDSLKESRKLSDRGVKIAVFGIGQG-INVAFNRFLVGCHPSDGKCNLYADSAWE 196 (281)
T ss_dssp CCSC--------------H-------HHHHHHHHHHHHTTCEEEEEEESSS-CCHHHHHHHTTSCSSSSCCTTEEEECGG
T ss_pred CCCC--------------c-------HHHHHHHHHHHHCCCEEEEEeCCCc-cCHHHHHhhhCCCCCCCCCceEEecchh
Confidence 7641 0 0123456667788887766666544 677788888876 676 788888886
Q ss_pred h
Q 002851 504 E 504 (874)
Q Consensus 504 ~ 504 (874)
+
T Consensus 197 ~ 197 (281)
T 4hqf_A 197 N 197 (281)
T ss_dssp G
T ss_pred h
Confidence 5
No 22
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.11 E-value=6.8e-05 Score=74.34 Aligned_cols=160 Identities=13% Similarity=0.153 Sum_probs=97.5
Q ss_pred EEEEEECCCCh-hHHHHHHHHHHHhhhc-CCCCcEEEEEEECceEEEEecCCCCcceeccccCCCCCCHHHHHHHhhcCC
Q 002851 276 IILVIDECLDE-PHLQHLQSSLHAFVES-IPPTARIGIILYGRTVSVYDFSEDSIASSDVLAGDKLPTEDSLKALLYGTG 353 (874)
Q Consensus 276 ~vFvID~s~~~-~~l~~l~~sL~~~L~~-Lp~~a~VGlITFd~~V~vy~l~~~~~~~~~V~~g~~~~~~~~l~~~l~~~~ 353 (874)
++||||.|.+- +..+.+++.++..++. +.++.+||||+|++.+++.-
T Consensus 10 iv~vlD~SgSM~~~~~~~~~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~------------------------------- 58 (185)
T 3n2n_F 10 LYFILDKSGSVLHHWNEIYYFVEQLAHKFISPQLRMSFIVFSTRGTTLM------------------------------- 58 (185)
T ss_dssp EEEEEECSGGGGGGHHHHHHHHHHHHHHCCCTTEEEEEEEESSSEEEEE-------------------------------
T ss_pred EEEEEeCCCChhhhHHHHHHHHHHHHHHhCCCCcEEEEEEEecCceEEe-------------------------------
Confidence 69999999762 2455566666665554 35689999999998776531
Q ss_pred ccccchhhhHHHHHHHHHhhcCCccccccCCCCCchHHHHHHHHHHhcCCCccccccccccCCCCcEEEEEecCCCCCCC
Q 002851 354 VYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRIIVCAGGPNTYGP 433 (874)
Q Consensus 354 ~fL~pl~e~~~~i~~lLe~L~~~~~~~~~~~r~rc~G~AL~vA~~lL~~~~~~~~~~~~~~~~~ggrIi~F~sGppT~Gp 433 (874)
|+.+.+..+...|+.|+... + ...+.+|.||..|...|..... .+......|++++.|.++.++
T Consensus 59 ----~l~~~~~~~~~~i~~l~~~~-~----~g~T~~~~al~~a~~~l~~~~~-------~~~~~~~~iillTDG~~~~~~ 122 (185)
T 3n2n_F 59 ----KLTEDREQIRQGLEELQKVL-P----GGDTYMHEGFERASEQIYYENR-------QGYRTASVIIALTDGELHEDL 122 (185)
T ss_dssp ----EEECCHHHHHHHHHHHHTCC-C----CSCCCHHHHHHHHHHHHHHHHT-------TCBCEEEEEEEEECCCCCHHH
T ss_pred ----ccCCCHHHHHHHHHHHhhhc-C----CCCccHHHHHHHHHHHHhhccc-------cCCCCCcEEEEEcCCCCCCCc
Confidence 00112233445566665431 1 2348899999999997721000 000112467777888653211
Q ss_pred CcccCCCCCCCchhhhHhHHHHHHHHHHHHhhcCeEEEEeeecCCCCCcccchhhhcccccEEEEcCC-hhh
Q 002851 434 GSVPHSFSHPNYLHMEKMALKWMELLGRKAHQHNAVIDILCAGNCPVRVPVLQPLAKASGGVLVLHDD-FGE 504 (874)
Q Consensus 434 G~l~~~~~~~~~~~~ek~a~~fY~~La~~~~~~gisVDiF~~s~d~vglaem~~l~~~TGG~v~~~~~-F~~ 504 (874)
..-.+..++++.+.|+.|..+..+ ..+-.+|..++.. +|.+|...+ |.+
T Consensus 123 -------------------~~~~~~~~~~~~~~gi~i~~igvg--~~~~~~L~~iA~~-~~~~~~~~~~~~~ 172 (185)
T 3n2n_F 123 -------------------FFYSEREANRSRDLGAIVYAVGVK--DFNETQLARIADS-KDHVFPVNDGFQA 172 (185)
T ss_dssp -------------------HHHHHHHHHHHHHTTEEEEEEECS--SCCHHHHTTTSSS-GGGEEEHHHHHHH
T ss_pred -------------------ccchHHHHHHHHHCCCEEEEEEec--cCCHHHHHHHhCC-CCCeEEeccHHHH
Confidence 011235677788888877666665 5688899999965 566777665 753
No 23
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=98.11 E-value=3.6e-05 Score=78.66 Aligned_cols=172 Identities=12% Similarity=0.139 Sum_probs=108.9
Q ss_pred cEEEEEECCCChhHHHHHHHHHHHhhhcCC---CCcEEEEEEECceEEEE-ecCCCCcceeccccCCCCCCHHHHHHHhh
Q 002851 275 PIILVIDECLDEPHLQHLQSSLHAFVESIP---PTARIGIILYGRTVSVY-DFSEDSIASSDVLAGDKLPTEDSLKALLY 350 (874)
Q Consensus 275 ~~vFvID~s~~~~~l~~l~~sL~~~L~~Lp---~~a~VGlITFd~~V~vy-~l~~~~~~~~~V~~g~~~~~~~~l~~~l~ 350 (874)
-++||||.|.+-..++.+|+.+...++.|. ++.+||||+|++.+++. .+.. +
T Consensus 9 div~vlD~SgSm~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~~~~~~~l~~--------------~---------- 64 (213)
T 1pt6_A 9 DIVIVLDGSNSIYPWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLNK--------------Y---------- 64 (213)
T ss_dssp EEEEEEECCTTCCCHHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSEEEEECTTT--------------C----------
T ss_pred cEEEEEECCCChhhHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCCccEEEeccc--------------c----------
Confidence 469999999875568899999999888774 78999999999887642 2210 0
Q ss_pred cCCccccchhhhHHHHHHHHHhhcCCccccccCCCCCchHHHHHHHHHHh-cCCCccccccccccCCCCcEEEEEecCCC
Q 002851 351 GTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALAII-QGPSAEMSRGVVKRPGGNSRIIVCAGGPN 429 (874)
Q Consensus 351 ~~~~fL~pl~e~~~~i~~lLe~L~~~~~~~~~~~r~rc~G~AL~vA~~lL-~~~~~~~~~~~~~~~~~ggrIi~F~sGpp 429 (874)
..+..+.+.|+.|... +...+.+|.||..|...+ .... + .+.+....|++++.|.+
T Consensus 65 ----------~~~~~~~~~i~~l~~~------~G~~T~~~~aL~~a~~~l~~~~~-----~--~r~~~~~~iillTDG~~ 121 (213)
T 1pt6_A 65 ----------SSTEEVLVAAKKIVQR------GGRQTMTALGTDTARKEAFTEAR-----G--ARRGVKKVMVIVTDGES 121 (213)
T ss_dssp ----------SSHHHHHHHHHTCCCC------CCSSCCHHHHHHHHHHTTTSGGG-----T--CCTTCEEEEEEEESSCC
T ss_pred ----------CCHHHHHHHHHhccCC------CCCcccHHHHHHHHHHHhcCccc-----C--CCCCCCeEEEEEcCCCC
Confidence 0111222334444321 112478999999999864 3100 0 01122345788888977
Q ss_pred CCCCCcccCCCCCCCchhhhHhHHHHHHHHHHHHhhcCeEEEEeeecCCC----CC----cccchhhhcc-cccEEEEcC
Q 002851 430 TYGPGSVPHSFSHPNYLHMEKMALKWMELLGRKAHQHNAVIDILCAGNCP----VR----VPVLQPLAKA-SGGVLVLHD 500 (874)
Q Consensus 430 T~GpG~l~~~~~~~~~~~~ek~a~~fY~~La~~~~~~gisVDiF~~s~d~----vg----laem~~l~~~-TGG~v~~~~ 500 (874)
+.|. -+...++++.+.|+.|..+..+.+. ++ ..+|+.++.. |||.++..+
T Consensus 122 ~~~~---------------------~~~~~~~~~~~~gi~i~~igig~~~~~~~~~~~~~~~~L~~iA~~~~~g~~~~~~ 180 (213)
T 1pt6_A 122 HDNH---------------------RLKKVIQDCEDENIQRFSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKHFFNVS 180 (213)
T ss_dssp SCSH---------------------HHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEES
T ss_pred CCCc---------------------cHHHHHHHHHHCCCEEEEEEeccccccccccchhhHHHHHHHhCCCchhcEEEeC
Confidence 5431 1244566777889877777665421 11 3678999998 889999998
Q ss_pred Chhh--HHHHHHHHHH
Q 002851 501 DFGE--AFGVNLQRAS 514 (874)
Q Consensus 501 ~F~~--~f~~dl~r~~ 514 (874)
++.+ .+.+.|.+.+
T Consensus 181 ~~~~l~~i~~~l~~~i 196 (213)
T 1pt6_A 181 DELALVTIVKTLGERI 196 (213)
T ss_dssp SGGGGGGGHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhh
Confidence 8864 3444555444
No 24
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=98.07 E-value=2.6e-05 Score=79.07 Aligned_cols=155 Identities=18% Similarity=0.232 Sum_probs=96.8
Q ss_pred cEEEEEECCCCh-------hHHHHHHHHHHHhhhc---CCCCcEEEEEEECce-EEEEecCCCCcceeccccCCCCCCHH
Q 002851 275 PIILVIDECLDE-------PHLQHLQSSLHAFVES---IPPTARIGIILYGRT-VSVYDFSEDSIASSDVLAGDKLPTED 343 (874)
Q Consensus 275 ~~vFvID~s~~~-------~~l~~l~~sL~~~L~~---Lp~~a~VGlITFd~~-V~vy~l~~~~~~~~~V~~g~~~~~~~ 343 (874)
.++||||+|.+- ..|+..|+.+...+.. ..+..+||||+|+.. .++
T Consensus 4 ~lvlvlD~S~SM~~~D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a~~----------------------- 60 (192)
T 2x5n_A 4 ATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQV----------------------- 60 (192)
T ss_dssp EEEEEECCSGGGGCTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCCE-----------------------
T ss_pred EEEEEEECCHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCcEE-----------------------
Confidence 469999999641 2577777776654432 234689999999752 222
Q ss_pred HHHHHhhcCCccccchhhhHHHHHHHHHhhcCCccccccCCCCCchHHHHHHHHHHhcCCCccccccccccCCCCcEEEE
Q 002851 344 SLKALLYGTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRIIV 423 (874)
Q Consensus 344 ~l~~~l~~~~~fL~pl~e~~~~i~~lLe~L~~~~~~~~~~~r~rc~G~AL~vA~~lL~~~~~~~~~~~~~~~~~ggrIi~ 423 (874)
+.|+......+...|+.+... ....+|.||..|..+|+.... .+...||++
T Consensus 61 ------------~~plT~d~~~i~~~L~~l~~~--------g~t~l~~aL~~A~~~l~~~~~---------~~~~~riii 111 (192)
T 2x5n_A 61 ------------LSTLTRDYGKFLSAMHDLPVR--------GNAKFGDGIQIAQLALKHREN---------KIQRQRIVA 111 (192)
T ss_dssp ------------EEEEESCHHHHHHHHTTCCCC--------SCCCHHHHHHHHHHHHHTCSC---------TTSEEEEEE
T ss_pred ------------ecCCCCCHHHHHHHHHcCCCC--------CCchHHHHHHHHHHHHHhccc---------cCCCceEEE
Confidence 112222334445556654431 248899999999999986310 123568888
Q ss_pred EecCCCCCCCCcccCCCCCCCchhhhHhHHHHHHHHHHHHhhcCeEEEEeeecCCCCCcccchhhhcccc----cEEEEc
Q 002851 424 CAGGPNTYGPGSVPHSFSHPNYLHMEKMALKWMELLGRKAHQHNAVIDILCAGNCPVRVPVLQPLAKASG----GVLVLH 499 (874)
Q Consensus 424 F~sGppT~GpG~l~~~~~~~~~~~~ek~a~~fY~~La~~~~~~gisVDiF~~s~d~vglaem~~l~~~TG----G~v~~~ 499 (874)
|+++.-+..+ . -..++++++.++||.|+++.++.+.-+-. |+.+++.++ +.++..
T Consensus 112 l~~~~~~~~~----------------~----~~~~~a~~lk~~gi~v~~Ig~G~~~~~~~-l~~la~~~n~~~~s~~~~~ 170 (192)
T 2x5n_A 112 FVGSPIVEDE----------------K----NLIRLAKRMKKNNVAIDIIHIGELQNESA-LQHFIDAANSSDSCHLVSI 170 (192)
T ss_dssp EECSCCSSCH----------------H----HHHHHHHHHHHTTEEEEEEEESCC---CH-HHHHHHHHCSTTCCEEEEE
T ss_pred EEECCCCCCc----------------h----hHHHHHHHHHHCCCEEEEEEeCCCCccHH-HHHHHHhccCCCceEEEEe
Confidence 8865321100 1 13568899999999999999987765556 888888842 344444
Q ss_pred CCh
Q 002851 500 DDF 502 (874)
Q Consensus 500 ~~F 502 (874)
+..
T Consensus 171 ~~~ 173 (192)
T 2x5n_A 171 PPS 173 (192)
T ss_dssp CCC
T ss_pred cCc
Confidence 443
No 25
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=98.06 E-value=5.2e-07 Score=90.49 Aligned_cols=164 Identities=12% Similarity=0.130 Sum_probs=98.4
Q ss_pred CcEEEEEECCCC--hhHHHHHHHHHHHhhhcC-CCCcEEEEEEECc-eEEEEecCCCCcceeccccCCCCCCHHHHHHHh
Q 002851 274 APIILVIDECLD--EPHLQHLQSSLHAFVESI-PPTARIGIILYGR-TVSVYDFSEDSIASSDVLAGDKLPTEDSLKALL 349 (874)
Q Consensus 274 p~~vFvID~s~~--~~~l~~l~~sL~~~L~~L-p~~a~VGlITFd~-~V~vy~l~~~~~~~~~V~~g~~~~~~~~l~~~l 349 (874)
..++||||+|.+ ...++.+++.+...++.+ +++.+||||+|++ ..++ ++
T Consensus 6 ~~vv~vlD~SgSM~~~~~~~~k~~~~~~~~~~~~~~~~v~lv~f~~~~~~~------------~~--------------- 58 (189)
T 2x31_A 6 RVLIFAVDASGSAAVARLSEAKGAVELLLGRAYAARDHVSLITFRGTAAQV------------LL--------------- 58 (189)
T ss_dssp CEEEEEEECCTTSCC--CHHHHHHHHHHHHHSCTTTSCCCEEEESBSCCCB------------CT---------------
T ss_pred eEEEEEEECCCCCCchHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCCceE------------ec---------------
Confidence 457999999975 357889999999998777 8899999999986 3210 11
Q ss_pred hcCCccccchhhhHHHHHHHHHhhcCCccccccCCCCCchHHHHHHHHHHhcCCCccccccccccCCCCcEEEEEecCCC
Q 002851 350 YGTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRIIVCAGGPN 429 (874)
Q Consensus 350 ~~~~~fL~pl~e~~~~i~~lLe~L~~~~~~~~~~~r~rc~G~AL~vA~~lL~~~~~~~~~~~~~~~~~ggrIi~F~sGpp 429 (874)
|.......+.+.|+.|... ..+.++.||..|..++..... .+....|++++.|.+
T Consensus 59 --------~~~~~~~~~~~~i~~l~~~--------g~T~~~~al~~a~~~l~~~~~---------~~~~~~ivliTDG~~ 113 (189)
T 2x31_A 59 --------QPSRSLTQTKRQLQGLPGG--------GGTPLASGMEMAMVTAKQARS---------RGMTPTIALLTDGRG 113 (189)
T ss_dssp --------TTCSCHHHHHHHHHHCCCC--------BCCCCHHHHHHHHHHHHTCTT---------TCSSEEEEECCBSCC
T ss_pred --------CCCCCHHHHHHHHhcCCCC--------CCCCHHHHHHHHHHHHHhccC---------CCCceEEEEECCCCC
Confidence 1111223344556666431 247899999999999975210 122457888888999
Q ss_pred CCCCCcccCCCC-CCCchhhhHhHHHHHHHHHHHHhhcCeEEEEeeecCCCCCcccchhhhcccccEEEEcCCh
Q 002851 430 TYGPGSVPHSFS-HPNYLHMEKMALKWMELLGRKAHQHNAVIDILCAGNCPVRVPVLQPLAKASGGVLVLHDDF 502 (874)
Q Consensus 430 T~GpG~l~~~~~-~~~~~~~ek~a~~fY~~La~~~~~~gisVDiF~~s~d~vglaem~~l~~~TGG~v~~~~~F 502 (874)
+.|...-....+ .... .++++++.+.||.|..+.++.+ +...|+.++..|||..++.++.
T Consensus 114 ~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~gi~v~~ig~g~~--~~~~L~~iA~~~~G~~~~~~~~ 174 (189)
T 2x31_A 114 NIALDGTANRELAGEQA-----------TKVARAIRASGMPAVIIDTAMR--PNPALVDLARTMDAHYIALPRA 174 (189)
T ss_dssp SSCCTHHHHHGGGTCCC-----------EEEEECTGGGGSCCTHHHHHHS--SCSSSCSTTTEEEESSTTTHHH
T ss_pred CCCCCccccccchhHHH-----------HHHHHHHHHcCCeEEEEecCCC--CHHHHHHHHHhcCCeEEECCCc
Confidence 887531000000 0000 0112223345544333333333 6778999999999976665443
No 26
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=98.06 E-value=4.4e-05 Score=81.13 Aligned_cols=164 Identities=14% Similarity=0.173 Sum_probs=105.1
Q ss_pred cEEEEEECCCC--hhHH-HHHHHHHHHhhhcCC---CCcEEEEEEECceEEEE-ecCCCCcceeccccCCCCCCHHHHHH
Q 002851 275 PIILVIDECLD--EPHL-QHLQSSLHAFVESIP---PTARIGIILYGRTVSVY-DFSEDSIASSDVLAGDKLPTEDSLKA 347 (874)
Q Consensus 275 ~~vFvID~s~~--~~~l-~~l~~sL~~~L~~Lp---~~a~VGlITFd~~V~vy-~l~~~~~~~~~V~~g~~~~~~~~l~~ 347 (874)
-++||||.|.+ ...+ +.+++.++..++.|. ++.+||||+|++.+.+. .+... .
T Consensus 20 DivfvlD~SgSM~~~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~~~~~~~l~~~----------------~---- 79 (266)
T 4hqo_A 20 DLYLLVDGSGSIGYPNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYTTELIRLGSG----------------Q---- 79 (266)
T ss_dssp EEEEEEECSTTTCHHHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSSEEEEECTTSH----------------H----
T ss_pred eEEEEEECCCCcChhHHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCCcceEEecCCC----------------C----
Confidence 36999999975 4556 588999999998886 78999999999876642 12110 0
Q ss_pred HhhcCCccccchhhhHHHHHHHHHhhcCCccccccCCCCCchHHHHHHHHHHhcCCCccccccccccCCCCcEEEEEecC
Q 002851 348 LLYGTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRIIVCAGG 427 (874)
Q Consensus 348 ~l~~~~~fL~pl~e~~~~i~~lLe~L~~~~~~~~~~~r~rc~G~AL~vA~~lL~~~~~~~~~~~~~~~~~ggrIi~F~sG 427 (874)
...+..+.+.|+.|+.... ....+.+|.||..|..++.... .+.+....|++++.|
T Consensus 80 ------------~~~~~~~~~~i~~l~~~~~----~~G~T~~~~AL~~a~~~l~~~~--------~r~~~~~~iIllTDG 135 (266)
T 4hqo_A 80 ------------SIDKRQALSKVTELRKTYT----PYGTTSMTAALDEVQKHLNDRV--------NREKAIQLVILMTDG 135 (266)
T ss_dssp ------------HHCHHHHHHHHHHHHHHCC----CCSCCCHHHHHHHHHHHHHTTC--------SCTTSEEEEEEEECS
T ss_pred ------------ccCHHHHHHHHHHhhhccC----CCCCCCHHHHHHHHHHHHhhcc--------ccCCCCeEEEEEccC
Confidence 0113344455666642100 1234889999999999987520 011123467788888
Q ss_pred CCCCCCCcccCCCCCCCchhhhHhHHHHHHHHHHHHhhcCeEEEEeeecCCCCCcccchhhhccc--cc--EEEEcCChh
Q 002851 428 PNTYGPGSVPHSFSHPNYLHMEKMALKWMELLGRKAHQHNAVIDILCAGNCPVRVPVLQPLAKAS--GG--VLVLHDDFG 503 (874)
Q Consensus 428 ppT~GpG~l~~~~~~~~~~~~ek~a~~fY~~La~~~~~~gisVDiF~~s~d~vglaem~~l~~~T--GG--~v~~~~~F~ 503 (874)
.++. . .-..+.++++.+.||.|-.+.++. .++-..|..++... || .+++..+|+
T Consensus 136 ~~~d--------------~-------~~~~~~a~~l~~~gi~i~~iGiG~-~~~~~~L~~iA~~~~~~g~~~~~~~~d~~ 193 (266)
T 4hqo_A 136 VPNS--------------K-------YRALEVANKLKQRNVRLAVIGIGQ-GINHQFNRLIAGCRPREPNCKFYSYADWN 193 (266)
T ss_dssp CCSC--------------H-------HHHHHHHHHHHHTTCEEEEEECSS-SCCHHHHHHHHTCCTTCSSCTTEECSCHH
T ss_pred CCCC--------------c-------hHHHHHHHHHHHCCCEEEEEecCc-ccCHHHHHHhhCCCCCCCCCCeEEecCHH
Confidence 7641 0 012356677778887776666654 45666678888764 43 788888886
Q ss_pred h
Q 002851 504 E 504 (874)
Q Consensus 504 ~ 504 (874)
+
T Consensus 194 ~ 194 (266)
T 4hqo_A 194 E 194 (266)
T ss_dssp H
T ss_pred H
Confidence 4
No 27
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=98.06 E-value=7e-05 Score=86.46 Aligned_cols=176 Identities=13% Similarity=0.148 Sum_probs=107.8
Q ss_pred EEEEEECCCC--hhHHHHHHHHHHHhhhcC---CCCcEEEEEEECceEEEEe-cCCCCcceeccccCCCCCCHHHHHHHh
Q 002851 276 IILVIDECLD--EPHLQHLQSSLHAFVESI---PPTARIGIILYGRTVSVYD-FSEDSIASSDVLAGDKLPTEDSLKALL 349 (874)
Q Consensus 276 ~vFvID~s~~--~~~l~~l~~sL~~~L~~L---p~~a~VGlITFd~~V~vy~-l~~~~~~~~~V~~g~~~~~~~~l~~~l 349 (874)
++||||.|.+ ...++.+|+.+...++.| +.+.+||||+|++..++.- +.
T Consensus 4 iv~vlD~SgSM~~~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~~~~------------------------- 58 (497)
T 1rrk_A 4 IYLVLDGSDSIGASNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVS------------------------- 58 (497)
T ss_dssp EEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEECTT-------------------------
T ss_pred EEEEEECCCCcchhhHHHHHHHHHHHHHHhhccCCCceEEEEEecCCceEeeccc-------------------------
Confidence 6999999975 567889998888887754 5689999999998766431 11
Q ss_pred hcCCccccchhhhHHHHHHHHHhhcCCccccccCCCCCchHHHHHHHHHHhcCCCccccccccccCCCCcEEEEEecCCC
Q 002851 350 YGTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRIIVCAGGPN 429 (874)
Q Consensus 350 ~~~~~fL~pl~e~~~~i~~lLe~L~~~~~~~~~~~r~rc~G~AL~vA~~lL~~~~~~~~~~~~~~~~~ggrIi~F~sGpp 429 (874)
.+....+..+.+.|+.|...... ....+.+|.||..|..+|...... .++.. .+....|++++.|..
T Consensus 59 -------~~~~~~~~~~~~~l~~l~~~~~~---~~g~T~~~~al~~a~~~l~~~~~~-~~~~~--~~~~~~iillTDG~~ 125 (497)
T 1rrk_A 59 -------EADSSNADWVTKQLNEINYEDHK---LKSGTNTKKALQAVYSMMSWPDDV-PPEGW--NRTRHVIILMTDGLH 125 (497)
T ss_dssp -------SGGGGCHHHHHHHHHHCCGGGSC---CTTCCCHHHHHHHHHHHHCCC-------CG--GGCEEEEEEEECSCC
T ss_pred -------cccccCHHHHHHHHHhCcCcccc---ccCccCHHHHHHHHHHHhhhhhcc-ccccc--cccceEEEEEeCCCc
Confidence 01122344455667777642110 123589999999999999431100 00000 112346888899998
Q ss_pred CCCCCcccCCCCCCCchhhhHhHHHHHHHH------HHHHhhcCeEEEEeeecCCCCCcccchhhhccccc--EEEEcCC
Q 002851 430 TYGPGSVPHSFSHPNYLHMEKMALKWMELL------GRKAHQHNAVIDILCAGNCPVRVPVLQPLAKASGG--VLVLHDD 501 (874)
Q Consensus 430 T~GpG~l~~~~~~~~~~~~ek~a~~fY~~L------a~~~~~~gisVDiF~~s~d~vglaem~~l~~~TGG--~v~~~~~ 501 (874)
+.|... ..+.+-.++. ++.+.+.||.|..+..+ +.++..+|+.++..+|| .++..++
T Consensus 126 ~~g~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~i~v~~igvG-~~~~~~~L~~iA~~~~g~~~~~~~~~ 190 (497)
T 1rrk_A 126 NMGGDP--------------ITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVG-PLVNQVNINALASKKDNEQHVCKVKD 190 (497)
T ss_dssp CSSSCT--------------HHHHHHHHHHTTCSSCC-CCCGGGEEEEEEECS-SSCCHHHHHHHSCCCTTCCCEEETTC
T ss_pred ccCCCh--------------hHHHHHHHHHhhhhcccccchhcCeeEEEecCC-CccCHHHHHHHhcCCCCcceEEEeCC
Confidence 876410 0111101111 11223347766666554 34678899999999999 8888888
Q ss_pred hhh
Q 002851 502 FGE 504 (874)
Q Consensus 502 F~~ 504 (874)
+++
T Consensus 191 ~~~ 193 (497)
T 1rrk_A 191 MEC 193 (497)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 28
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=98.03 E-value=8.9e-05 Score=73.74 Aligned_cols=161 Identities=12% Similarity=0.248 Sum_probs=100.7
Q ss_pred cEEEEEECCCC--hhHHHHHHHHHHHhhhcC-CCCcEEEEEEECceEEEE-ecCCCCcceeccccCCCCCCHHHHHHHhh
Q 002851 275 PIILVIDECLD--EPHLQHLQSSLHAFVESI-PPTARIGIILYGRTVSVY-DFSEDSIASSDVLAGDKLPTEDSLKALLY 350 (874)
Q Consensus 275 ~~vFvID~s~~--~~~l~~l~~sL~~~L~~L-p~~a~VGlITFd~~V~vy-~l~~~~~~~~~V~~g~~~~~~~~l~~~l~ 350 (874)
-++||||.|.+ ...++.+++.++..++.| +.+.+||+|+|++.+++. .+. +.
T Consensus 4 divfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~rv~vv~fs~~~~~~~~l~-------------------~~----- 59 (179)
T 1mjn_A 4 DLVFLFDGSMSLQPDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYKTEFDFS-------------------DY----- 59 (179)
T ss_dssp EEEEEEECBTTCCHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSSEEEEECHH-------------------HH-----
T ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEEEECCceeEEEcCc-------------------cc-----
Confidence 36999999875 557889999999999888 456899999999987642 110 00
Q ss_pred cCCccccchhhhHHHHHHHHHhhcCCccccccCCCCCchHHHHHHHHH-HhcCCCccccccccccCCCCcEEEEEecCCC
Q 002851 351 GTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALA-IIQGPSAEMSRGVVKRPGGNSRIIVCAGGPN 429 (874)
Q Consensus 351 ~~~~fL~pl~e~~~~i~~lLe~L~~~~~~~~~~~r~rc~G~AL~vA~~-lL~~~~~~~~~~~~~~~~~ggrIi~F~sGpp 429 (874)
..+..+.++++.|+... ..+.+|.||..|.. ++.... + .+.+..-.|++++.|.+
T Consensus 60 ----------~~~~~~~~~~~~i~~~~-------g~T~~~~aL~~a~~~~~~~~~-----g--~r~~~~~~iillTDG~~ 115 (179)
T 1mjn_A 60 ----------VKRKDPDALLKHVKHML-------LLTNTFGAINYVATEVFREEL-----G--ARPDATKVLIIITDGEA 115 (179)
T ss_dssp ----------HHHCCHHHHHTTCCCCC-------BCCCHHHHHHHHHHHTSSGGG-----T--CCTTSEEEEEEEESSCC
T ss_pred ----------CCHHHHHHHHHhcccCC-------CCChHHHHHHHHHHHhccccc-----C--CCCCCCeEEEEEcCCCC
Confidence 01112344556665421 24889999999985 543210 0 00111235788889988
Q ss_pred CCCCCcccCCCCCCCchhhhHhHHHHHHHHHHHHhhcCeEEEEeeecCCCCC----cccchhhhccccc-EEEEcCChhh
Q 002851 430 TYGPGSVPHSFSHPNYLHMEKMALKWMELLGRKAHQHNAVIDILCAGNCPVR----VPVLQPLAKASGG-VLVLHDDFGE 504 (874)
Q Consensus 430 T~GpG~l~~~~~~~~~~~~ek~a~~fY~~La~~~~~~gisVDiF~~s~d~vg----laem~~l~~~TGG-~v~~~~~F~~ 504 (874)
+.|.- + . .+.|+.|-.+..+.+ .+ ..+|..++..+|| .++..++|++
T Consensus 116 ~~~~~-~-------------~-------------~~~~i~i~~igvG~~-~~~~~~~~~L~~iA~~~~~~~~~~~~~~~~ 167 (179)
T 1mjn_A 116 TDSGN-I-------------D-------------AAKDIIRYIIGIGKH-FQTKESQETLHKFASKPASEFVKILDTFEK 167 (179)
T ss_dssp SSCSC-C-------------G-------------GGTTSEEEEEEESGG-GCSHHHHHTTGGGSCSCHHHHEEEESSGGG
T ss_pred CCCcc-h-------------H-------------HHCCCEEEEEEcccc-ccccccHHHHHHHhCCccHhcEEEeCCHHH
Confidence 76420 0 0 135666555555543 23 3789999999987 5778888864
Q ss_pred --HHHHHHH
Q 002851 505 --AFGVNLQ 511 (874)
Q Consensus 505 --~f~~dl~ 511 (874)
.+.+.|.
T Consensus 168 L~~i~~~i~ 176 (179)
T 1mjn_A 168 LKDLCTELQ 176 (179)
T ss_dssp SCCHHHHHH
T ss_pred HHHHHHHHH
Confidence 2444443
No 29
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=97.89 E-value=3.8e-05 Score=93.19 Aligned_cols=182 Identities=13% Similarity=0.182 Sum_probs=108.1
Q ss_pred cEEEEEECCCC--hhHHHHHHHHHHHhhhcCC---CCcEEEEEEECceEEEE-ecCCCCcceeccccCCCCCCHHHHHHH
Q 002851 275 PIILVIDECLD--EPHLQHLQSSLHAFVESIP---PTARIGIILYGRTVSVY-DFSEDSIASSDVLAGDKLPTEDSLKAL 348 (874)
Q Consensus 275 ~~vFvID~s~~--~~~l~~l~~sL~~~L~~Lp---~~a~VGlITFd~~V~vy-~l~~~~~~~~~V~~g~~~~~~~~l~~~ 348 (874)
-++||||.|.+ ...++.+|+.++..++.|. .+.+||||+|++.+.+. .+... .
T Consensus 245 div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~~~~~~~l~~~--------------~------- 303 (741)
T 3hrz_D 245 NIYLVLDGSGSIGASDFTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEA--------------D------- 303 (741)
T ss_dssp EEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEECTTSG--------------G-------
T ss_pred eEEEEeccCCcccccchHHHHHHHHHHHHhhhccCCCceEEEEEeccCCceeEeeccc--------------C-------
Confidence 36999999975 5678899999988887764 57899999999876542 12110 0
Q ss_pred hhcCCccccchhhhHHHHHHHHHhhcCCccccccCCCCCchHHHHHHHHHHhcCCCccccccccccCCCCcEEEEEecCC
Q 002851 349 LYGTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRIIVCAGGP 428 (874)
Q Consensus 349 l~~~~~fL~pl~e~~~~i~~lLe~L~~~~~~~~~~~r~rc~G~AL~vA~~lL~~~~~~~~~~~~~~~~~ggrIi~F~sGp 428 (874)
...++.+.+.|+.|+.... .....+.+|.||..|..+|...... .+... .+..-.||++++|.
T Consensus 304 -----------~~~~~~~~~~i~~l~~~~~---~~~ggT~~~~aL~~a~~~l~~~~~~-~~~~~--~~~~~~iillTDG~ 366 (741)
T 3hrz_D 304 -----------SSNADWVTKQLNEINYEDH---KLKSGTNTKKALQAVYSMMSWPDDV-PPEGW--NRTRHVIILMTDGL 366 (741)
T ss_dssp -----------GGCHHHHHHHHTTCCGGGG---SSSCCCCHHHHHHHHHHHHCCC--C-CCTTG--GGEEEEEEEEECSC
T ss_pred -----------CcCHHHHHHHHHhcccccc---cCCCChHHHHHHHHHHHHHhhhhhc-cccch--hccCeEEEEECCCc
Confidence 0122334455666553110 1124589999999999998421000 00000 00112488899998
Q ss_pred CCCCCCcccCCCCCCCchhhh-HhHHHHHHHHHHHHhhcCeEEEEeeecCCCCCcccchhhhcccccE--EEEcCChhh
Q 002851 429 NTYGPGSVPHSFSHPNYLHME-KMALKWMELLGRKAHQHNAVIDILCAGNCPVRVPVLQPLAKASGGV--LVLHDDFGE 504 (874)
Q Consensus 429 pT~GpG~l~~~~~~~~~~~~e-k~a~~fY~~La~~~~~~gisVDiF~~s~d~vglaem~~l~~~TGG~--v~~~~~F~~ 504 (874)
++.|..-.. ..+ -.........++++.+.||.|..+..+. .++-.+|..|+..+||. ++..++|++
T Consensus 367 ~n~g~~p~~---------~~~~i~~~~~~~~~a~~~~~~gi~i~~igvG~-~~~~~~L~~ia~~~~g~~~~~~~~~~~~ 435 (741)
T 3hrz_D 367 HNMGGDPIT---------VIDEIRDLLYIGKDRKNPREDYLDVYVFGVGP-LVNQVNINALASKKDNEQHVFKVKDMEN 435 (741)
T ss_dssp CCSSSCTHH---------HHHHHHHHTTCSSCTTCCCGGGEEEEEEECSS-SCCHHHHHHHSCCCTTCCCEECBSSHHH
T ss_pred cccCCCchH---------HHHHHHHHhhcccccccccccCeeEEEEeCCC-cCCHHHHHHHhcCCCCcceEEEeCCHHH
Confidence 887641100 000 0000111123445566777666665553 47788999999999995 888888864
No 30
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=97.83 E-value=0.00021 Score=72.33 Aligned_cols=152 Identities=16% Similarity=0.228 Sum_probs=93.8
Q ss_pred cEEEEEECCCC--hhHHHHHHHHHHHhhhcC---CCCcEEEEEEECceEEEE-ecCCCCcceeccccCCCCCCHHHHHHH
Q 002851 275 PIILVIDECLD--EPHLQHLQSSLHAFVESI---PPTARIGIILYGRTVSVY-DFSEDSIASSDVLAGDKLPTEDSLKAL 348 (874)
Q Consensus 275 ~~vFvID~s~~--~~~l~~l~~sL~~~L~~L---p~~a~VGlITFd~~V~vy-~l~~~~~~~~~V~~g~~~~~~~~l~~~ 348 (874)
-++||||.|.+ ...++.+|+.++..++.| +++.+||||+|++.+++. .+.. +
T Consensus 23 DivfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~~~~~~~l~~--------------~-------- 80 (199)
T 3zqk_A 23 DVAFVLEGSDKIGEADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVTVEYPFSE--------------A-------- 80 (199)
T ss_dssp EEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSSEEEEECTTS--------------C--------
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCcccEEEecCC--------------c--------
Confidence 36999999875 567899999999999988 579999999999887652 2211 0
Q ss_pred hhcCCccccchhhhHHHHHHHHHhhcCCccccccCCCCCchHHHHHHHHHHhcCCCccccccccccCCCCcEEEEEecCC
Q 002851 349 LYGTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRIIVCAGGP 428 (874)
Q Consensus 349 l~~~~~fL~pl~e~~~~i~~lLe~L~~~~~~~~~~~r~rc~G~AL~vA~~lL~~~~~~~~~~~~~~~~~ggrIi~F~sGp 428 (874)
..+..+.+.|+.|+.. +...+.+|.||..|...+-... .+. +.+....|+++++|.
T Consensus 81 ------------~~~~~~~~~i~~l~~~------gg~~T~~~~aL~~a~~~l~~~~----~g~--r~~~~~~iillTDG~ 136 (199)
T 3zqk_A 81 ------------QSKGDILQRLREIRYQ------GGNRTNTGLALRYLSDHSFLVS----QGD--REQAPNLVYMVTGNP 136 (199)
T ss_dssp ------------CCHHHHHHHHHHCCCC------CCSCCCHHHHHHHCCCCCTCGG----GTC--CTTSCEEEEEEECSC
T ss_pred ------------CCHHHHHHHHHhCcCC------CCCcChHHHHHHHHHHHhhCcc----cCC--CCCCCeEEEEEeCCC
Confidence 0122233445565432 1124789999999887432100 000 011123577778886
Q ss_pred CCCCCCcccCCCCCCCchhhhHhHHHHHHHHHHHHhhcCeEEEEeeecC-CCCCcccchhhhcccccEEEEcCChhh
Q 002851 429 NTYGPGSVPHSFSHPNYLHMEKMALKWMELLGRKAHQHNAVIDILCAGN-CPVRVPVLQPLAKASGGVLVLHDDFGE 504 (874)
Q Consensus 429 pT~GpG~l~~~~~~~~~~~~ek~a~~fY~~La~~~~~~gisVDiF~~s~-d~vglaem~~l~~~TGG~v~~~~~F~~ 504 (874)
.+.. + . . + ..|+ .+|+.+. +.++..+|..++. +|..++.++|++
T Consensus 137 ~~d~---v-----~-------~--------~-----~~~v--~v~~iGiG~~~~~~~L~~iA~--~~~~~~~~~~~~ 181 (199)
T 3zqk_A 137 ASDE---I-----K-------R--------L-----PGDI--QVVPIGVGPNANVQELERIGW--PNAPILIQDFET 181 (199)
T ss_dssp CSSC---C-----C-------C--------C-----CTTE--EEEEEEESTTCCHHHHHHHHT--TSCCEEESCTTT
T ss_pred CchH---H-----H-------H--------H-----hCCC--EEEEEEcCCCCCHHHHHHHhC--CCceEEeCCHHH
Confidence 4211 0 0 0 0 1454 5565553 3678899999997 455667788865
No 31
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=97.74 E-value=0.00038 Score=68.98 Aligned_cols=144 Identities=15% Similarity=0.203 Sum_probs=86.4
Q ss_pred cEEEEEECCCC--hhHHHHHHHHHHHhhhcCC---CCcEEEEEEECceEEEE-ecCCCCcceeccccCCCCCCHHHHHHH
Q 002851 275 PIILVIDECLD--EPHLQHLQSSLHAFVESIP---PTARIGIILYGRTVSVY-DFSEDSIASSDVLAGDKLPTEDSLKAL 348 (874)
Q Consensus 275 ~~vFvID~s~~--~~~l~~l~~sL~~~L~~Lp---~~a~VGlITFd~~V~vy-~l~~~~~~~~~V~~g~~~~~~~~l~~~ 348 (874)
-++||||.|.+ ...++.+++.+...++.|+ ++.+||||+|++.+++. .+...
T Consensus 19 divfvlD~SgSm~~~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~~~~~~~l~~~---------------------- 76 (178)
T 2xgg_A 19 DICFLIDSSGSIGIQNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDVHLQWDLQSP---------------------- 76 (178)
T ss_dssp EEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECTTSG----------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCceEEEEeCCCC----------------------
Confidence 46999999865 5678999999999998885 46999999999887642 22110
Q ss_pred hhcCCccccchhhhHHHHHHHHHhhcCCccccccCCCCCchHHHHHHHHHHhcCCCccccccccccCCCCcEEEEEecCC
Q 002851 349 LYGTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRIIVCAGGP 428 (874)
Q Consensus 349 l~~~~~fL~pl~e~~~~i~~lLe~L~~~~~~~~~~~r~rc~G~AL~vA~~lL~~~~~~~~~~~~~~~~~ggrIi~F~sGp 428 (874)
. ...+..+.+.|+.|+.. ...+.+|.||..|...|..... + .+.+....|++++.|.
T Consensus 77 --------~--~~~~~~~~~~i~~l~~~-------~g~T~~~~aL~~a~~~l~~~~~----g--~r~~~~~~iillTDG~ 133 (178)
T 2xgg_A 77 --------N--AVDKQLAAHAVLDMPYK-------KGSTNTSDGLKACKQILFTGSR----P--GREHVPKLVIGMTDGE 133 (178)
T ss_dssp --------G--GSCHHHHHHHHHHCCCC-------CCCCCHHHHHHHHHHHHHHCCC----T--TCTTSCEEEEEEESSC
T ss_pred --------C--ccCHHHHHHHHHhCCCC-------CCCccHHHHHHHHHHHhcCccc----C--CCCCCCEEEEEEcCCC
Confidence 0 00223344555665421 1358899999999997632100 0 0012235688888887
Q ss_pred CCCCCCcccCCCCCCCchhhhHhHHHHHHHHHHHHhhcCeEEEEeeecCCCCCcccc
Q 002851 429 NTYGPGSVPHSFSHPNYLHMEKMALKWMELLGRKAHQHNAVIDILCAGNCPVRVPVL 485 (874)
Q Consensus 429 pT~GpG~l~~~~~~~~~~~~ek~a~~fY~~La~~~~~~gisVDiF~~s~d~vglaem 485 (874)
++.| .-.+..++++.+.||.|-.+..+. .++-.+|
T Consensus 134 ~~~~---------------------~~~~~~~~~l~~~gi~v~~igvG~-~~~~~~l 168 (178)
T 2xgg_A 134 SDSD---------------------FRTVRAAKEIRELGGIVTVLAVGH-YVAAALV 168 (178)
T ss_dssp CCHH---------------------HHHSHHHHHHHHTTCEEEEEECC---------
T ss_pred CCCC---------------------ccHHHHHHHHHHCCCEEEEEEcCC-cCCHHHH
Confidence 6432 012456677778888777766653 3444444
No 32
>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1
Probab=97.73 E-value=0.00016 Score=65.73 Aligned_cols=87 Identities=16% Similarity=0.237 Sum_probs=64.0
Q ss_pred ccceeeeccCCC--cccCCcccccccCCcEEEEeCCcEEEEEeCCcccccccccHHHHHHHHHHHHHHH-hcCCCCcEEE
Q 002851 726 APRCLMYREGGT--FEELPAYDLAMQSDKAVVLDHGTDVFIWLGAELAADEGRSAAALAACRTLAEELS-EFRFPAPRIL 802 (874)
Q Consensus 726 yP~L~~~~~~~~--~~~lP~~~~sl~~d~iyLLD~g~~i~Iw~G~~v~~~~~~~~~~l~~~~~~~~~l~-~~R~p~Pr~i 802 (874)
.|+||.++..+. ..++|....+|.++.+||||+|..||+|+|+..+..+ .++....|+.|. .+|-....+.
T Consensus 2 ~~rL~~v~g~~~~~~~eV~~~~~sLns~d~FILd~g~~iyvW~G~~s~~~E------k~~A~~~a~~i~~~er~~~~~i~ 75 (104)
T 1kcq_A 2 VQRLFQVKGRRVVRATEVPVSWESFNNGDCFILDLGNNIHQWCGSNSNRYE------RLKATQVSKGIRDNERSGRARVH 75 (104)
T ss_dssp CCEEEEEEESSSEEEEEECSSGGGCCTTSEEEEECSSEEEEEECTTCCHHH------HHHHHHHHHHHHHHTSTTCSEEE
T ss_pred CcEEEEEECCCcEEEEEecCCHHHcCCCCeEEEeCCCEEEEEeCCCCCHHH------HHHHHHHHHHHHhhccCCCCcEE
Confidence 478888875433 2245666789999999999999999999999976432 223456666665 3676677899
Q ss_pred EEecCCchHHHHHHhhc
Q 002851 803 AFKEGSSQARYFVTRLI 819 (874)
Q Consensus 803 ~~~qg~sqaRfl~srL~ 819 (874)
+++||...+.||. -|-
T Consensus 76 ~v~eG~E~~~Fw~-~LG 91 (104)
T 1kcq_A 76 VSEEGTEPEAMLQ-VLG 91 (104)
T ss_dssp EEETTCCCHHHHH-HHC
T ss_pred EEeCCCCCHHHHH-HcC
Confidence 9999998888863 443
No 33
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=97.48 E-value=0.00013 Score=85.90 Aligned_cols=146 Identities=13% Similarity=0.231 Sum_probs=86.8
Q ss_pred cEEEEEECCCC--h------hHHHHHHHHHHHhhhc---CCCCcEEEEEEECceEEEEecCCC-CcceeccccCCCCCCH
Q 002851 275 PIILVIDECLD--E------PHLQHLQSSLHAFVES---IPPTARIGIILYGRTVSVYDFSED-SIASSDVLAGDKLPTE 342 (874)
Q Consensus 275 ~~vFvID~s~~--~------~~l~~l~~sL~~~L~~---Lp~~a~VGlITFd~~V~vy~l~~~-~~~~~~V~~g~~~~~~ 342 (874)
.+|||||+|.+ + ..|+.+++++...++. ..++.+||||+|++.-.-..+... ......+
T Consensus 9 ~iv~~iDvS~SM~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~~~~plt~d~~y~~i~v--------- 79 (565)
T 1jey_B 9 AVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSGGDQYQNITV--------- 79 (565)
T ss_dssp EEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCTTTCSTTEEE---------
T ss_pred EEEEEEECChHhcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccCCCCCccccccCCCceEE---------
Confidence 47999999963 1 3788999999988883 567899999999865321111111 0111111
Q ss_pred HHHHHHhhcCCccccchhh-hHHHHHHHHHh-hcCCccccccCCCCCchHHHHHHHHHHhcCCCccccccccccCCCCcE
Q 002851 343 DSLKALLYGTGVYLSPMHA-SKQVAHDIFSS-LRPYKLNITEASRDRCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSR 420 (874)
Q Consensus 343 ~~l~~~l~~~~~fL~pl~e-~~~~i~~lLe~-L~~~~~~~~~~~r~rc~G~AL~vA~~lL~~~~~~~~~~~~~~~~~ggr 420 (874)
+.++.. ....+.. |+. |.. +.....+|.||.+|..+|+.... +.....-|
T Consensus 80 -------------l~~l~~~~~~~l~~-l~~~l~~-------~~~~t~i~~al~~A~~~l~~~~~-------~~k~~~kr 131 (565)
T 1jey_B 80 -------------HRHLMLPDFDLLED-IESKIQP-------GSQQADFLDALIVSMDVIQHETI-------GKKFEKRH 131 (565)
T ss_dssp -------------EEEEECCCHHHHHH-HHTTCCC-------CSSCCCHHHHHHHHHHHHHHHSS-------SSCCSEEE
T ss_pred -------------eecCCCCCHHHHHH-HHhhccC-------CCccccHHHHHHHHHHHHHHHhh-------cccccccE
Confidence 122221 1122222 222 321 22357899999999999975210 00001248
Q ss_pred EEEEecCCCCCCCCcccCCCCCCCchhhhHhHHHHHHHHHHHHhhcCeEEE-EeeecC
Q 002851 421 IIVCAGGPNTYGPGSVPHSFSHPNYLHMEKMALKWMELLGRKAHQHNAVID-ILCAGN 477 (874)
Q Consensus 421 Ii~F~sGppT~GpG~l~~~~~~~~~~~~ek~a~~fY~~La~~~~~~gisVD-iF~~s~ 477 (874)
|++||.|-.+.|.. . ..++++.+.+.||.|+ ++.++.
T Consensus 132 IiLlTDg~~~~~~~------------~--------~~~~a~~l~~~gI~i~~vig~g~ 169 (565)
T 1jey_B 132 IEIFTDLSSRFSKS------------Q--------LDIIIHSLKKCDISLQFFLPFSL 169 (565)
T ss_dssp EEEECCCCSCCCCT------------T--------HHHHHHHHHHTTEEEEEEESSCC
T ss_pred EEEEeCCCCCCCHH------------H--------HHHHHHHHHhcCcEEEEEeccCC
Confidence 99999886655311 0 2467889999999999 665544
No 34
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=97.42 E-value=0.00024 Score=89.67 Aligned_cols=163 Identities=13% Similarity=0.164 Sum_probs=101.3
Q ss_pred cEEEEEECCCC--hhHHHHHHHHHHHhhhcCCC-CcEEEEEEECceEEEE-ecCCCCcceeccccCCCCCCHHHHHHHhh
Q 002851 275 PIILVIDECLD--EPHLQHLQSSLHAFVESIPP-TARIGIILYGRTVSVY-DFSEDSIASSDVLAGDKLPTEDSLKALLY 350 (874)
Q Consensus 275 ~~vFvID~s~~--~~~l~~l~~sL~~~L~~Lp~-~a~VGlITFd~~V~vy-~l~~~~~~~~~V~~g~~~~~~~~l~~~l~ 350 (874)
-++||||.|.+ ...++.+|+.++..++.+.+ +.+||||+|++.+++. .|.. +.+
T Consensus 132 DIvfvlD~SgSm~~~~f~~~k~fv~~lv~~~~~~~~rVglV~Fs~~~~~~~~lt~--------~~~-------------- 189 (1095)
T 3k6s_A 132 DIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFEE--------FRR-------------- 189 (1095)
T ss_dssp EEEEEEECCTTSCSHHHHHHHHHHHHHHHSSCSSSEEEEEEEESSSEEEEECSHH--------HHS--------------
T ss_pred cEEEEEcCCCCCChhHHHHHHHHHHHHHHhccccccEEEEEEECCeEEEEecCcc--------cCC--------------
Confidence 36999999875 56789999999999999875 4899999999887653 1210 000
Q ss_pred cCCccccchhhhHHHHHHHHHhhcCCccccccCCCCCchHHHHHHHHHHhcCCCccccccccccCCCCcEEEEEecCCCC
Q 002851 351 GTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRIIVCAGGPNT 430 (874)
Q Consensus 351 ~~~~fL~pl~e~~~~i~~lLe~L~~~~~~~~~~~r~rc~G~AL~vA~~lL~~~~~~~~~~~~~~~~~ggrIi~F~sGppT 430 (874)
+..+.+.++.|+.. ...+.+|.||..|...+-... .+. +.+..-.|+++++|..+
T Consensus 190 ------------~~~l~~ai~~i~~~-------gG~T~~g~AL~~a~~~lf~~~----~g~--R~~~~kviIllTDG~~~ 244 (1095)
T 3k6s_A 190 ------------SSNPLSLLASVHQL-------QGFTYTATAIQNVVHRLFHAS----YGA--RRDAAKILIVITDGKKE 244 (1095)
T ss_dssp ------------CSCGGGGTTTCCCC-------CSCBCHHHHHHHHHTTTTSTT----TTC--CSSSEEEEEEEESSCCB
T ss_pred ------------HHHHHHHHhhhhcc-------cCCChHHHHHHHHHHhhcccc----ccC--CCCCCeEEEEEeCCCcC
Confidence 00011223344321 134889999999987542210 000 01112247777888764
Q ss_pred CCCCcccCCCCCCCchhhhHhHHHHHHHHHHHHhhcCeEEEEeeecCC---CCCcccchhhhccccc-EEEEcCChhh
Q 002851 431 YGPGSVPHSFSHPNYLHMEKMALKWMELLGRKAHQHNAVIDILCAGNC---PVRVPVLQPLAKASGG-VLVLHDDFGE 504 (874)
Q Consensus 431 ~GpG~l~~~~~~~~~~~~ek~a~~fY~~La~~~~~~gisVDiF~~s~d---~vglaem~~l~~~TGG-~v~~~~~F~~ 504 (874)
..+.. +++.++++.+.||.|-.+..+.+ .++..+|..++..++| .++..++|++
T Consensus 245 ~d~~~--------------------~~~~a~~~r~~GI~i~aIGVG~~~~~~~d~~eL~~IAs~p~g~~vf~v~d~~~ 302 (1095)
T 3k6s_A 245 GDSLD--------------------YKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELNDIASKPSQEHIFKVEDFDA 302 (1095)
T ss_dssp SCSSC--------------------HHHHHHHHHHHCEEECCEEBSSGGGSTTSSHHHHTTSCSSTTTSCCCBSCSGG
T ss_pred CCchh--------------------HHHHHHHHHHCCCEEEEEecccccccccCHHHHHHHHcCCCCceEEEcCCHHH
Confidence 21110 23456666777876555555544 2688999999999887 7777788864
No 35
>1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A
Probab=97.30 E-value=0.00058 Score=63.15 Aligned_cols=83 Identities=20% Similarity=0.355 Sum_probs=60.7
Q ss_pred ccceeeeccCCC--cccCCcccccccCCcEEEEeCCcEEEEEeCCcccccccccHHHHHHHHHHHHHHHhcCCCCcEEEE
Q 002851 726 APRCLMYREGGT--FEELPAYDLAMQSDKAVVLDHGTDVFIWLGAELAADEGRSAAALAACRTLAEELSEFRFPAPRILA 803 (874)
Q Consensus 726 yP~L~~~~~~~~--~~~lP~~~~sl~~d~iyLLD~g~~i~Iw~G~~v~~~~~~~~~~l~~~~~~~~~l~~~R~p~Pr~i~ 803 (874)
.++||.++-... ..++|....+|.++.+||||+|..||+|+|+..+..+ ..+.+..|+.|..+|-....+.+
T Consensus 12 ~~rL~~v~G~~~~~~~eV~~~~ssLns~D~FILd~g~~iyvW~G~~ss~~E------k~~A~~~a~~i~~er~g~~~i~v 85 (114)
T 1svq_A 12 KPRLLHISGDKNAKVAEVPLATSSLNSGDCFLLDAGLTIYQFNGSKSSPQE------KNKAAEVARAIDAERKGLPKVEV 85 (114)
T ss_dssp CEEEEEEECTTSCEEEEECCCSSSCCTTSEEEEEETTEEEECCCTTCCHHH------HHHHHHHHHHHHHHHTTCSEEEE
T ss_pred CcEEEEEECCCcEEEEEecCCHHHcCCCCeEEEecCCEEEEEeCCCCCHHH------HHHHHHHHHHhhhccCCCccEEE
Confidence 578888864322 2245666789999999999999999999999976432 22445666666556655567999
Q ss_pred EecCC--chHHHH
Q 002851 804 FKEGS--SQARYF 814 (874)
Q Consensus 804 ~~qg~--sqaRfl 814 (874)
+++|. ..+.||
T Consensus 86 v~eg~~~E~~~Fw 98 (114)
T 1svq_A 86 FCETDSDIPAEFW 98 (114)
T ss_dssp CCCCTTCCCHHHH
T ss_pred EeCCCcCCcHHHH
Confidence 99998 666776
No 36
>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A
Probab=96.20 E-value=0.0079 Score=67.51 Aligned_cols=88 Identities=23% Similarity=0.413 Sum_probs=55.6
Q ss_pred hhccceeeeccC-CCcc--cC-CcccccccCCcEEEEeCCcEEEEEeCCcccccccccHHHHHHHHHHHHHHHhcCCCCc
Q 002851 724 MVAPRCLMYREG-GTFE--EL-PAYDLAMQSDKAVVLDHGTDVFIWLGAELAADEGRSAAALAACRTLAEELSEFRFPAP 799 (874)
Q Consensus 724 miyP~L~~~~~~-~~~~--~l-P~~~~sl~~d~iyLLD~g~~i~Iw~G~~v~~~~~~~~~~l~~~~~~~~~l~~~R~p~P 799 (874)
-..|+||..++. |.+. ++ |.....|.++.+||||+|..||||+|...+..+- +..++...++++.....|-+.-
T Consensus 280 ~~~~rLf~~s~~~G~~~v~EV~~f~Q~dL~~~dv~ILD~g~~IfVW~G~~as~~Er--~~Al~~A~~yi~~~~~~r~~~t 357 (398)
T 3fg7_A 280 VITPRLFECSNKTGRFLATEIPDFNQDDLEEDDVFLLDVWDQVFFWIGKHANEEEK--KAAATTAQEYLKTHPSGRDPET 357 (398)
T ss_dssp CCCCEEEEEECTTSSCEEEECTTCCGGGCCTTSEEEEECSSCEEEEECTTCCHHHH--HHHHHHHHHHHHHSSSSCCTTC
T ss_pred cccCeeEEEEcCCCCEEEEEecccCHHHCCCCCEEEEeCCCEEEEEECCCCCHHHH--HHHHHHHHHHHHhCcccCCCCC
Confidence 358999988764 5442 23 3334568899999999999999999999764321 2333333344443323454433
Q ss_pred EEEEEecCCchHHH
Q 002851 800 RILAFKEGSSQARY 813 (874)
Q Consensus 800 r~i~~~qg~sqaRf 813 (874)
.+.++.||..-..|
T Consensus 358 pi~~V~eG~Ep~~F 371 (398)
T 3fg7_A 358 PIIVVKQGHEPPTF 371 (398)
T ss_dssp CEEEEETTCCCHHH
T ss_pred CEEEEcCCCCCHHH
Confidence 37788888754443
No 37
>2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A
Probab=96.18 E-value=0.0056 Score=67.45 Aligned_cols=87 Identities=23% Similarity=0.400 Sum_probs=52.3
Q ss_pred hccceeeeccC-CCcc--cC--CcccccccCCcEEEEeCCcEEEEEeCCcccccccccHHHHHHHHHHHHHHHhcCCCCc
Q 002851 725 VAPRCLMYREG-GTFE--EL--PAYDLAMQSDKAVVLDHGTDVFIWLGAELAADEGRSAAALAACRTLAEELSEFRFPAP 799 (874)
Q Consensus 725 iyP~L~~~~~~-~~~~--~l--P~~~~sl~~d~iyLLD~g~~i~Iw~G~~v~~~~~~~~~~l~~~~~~~~~l~~~R~p~P 799 (874)
..|+||..++. |.+. ++ |.....|.++.+||||+|..||||+|..++..+- +..++...+.++.....|-+..
T Consensus 227 ~~~rLf~~s~~~G~~~v~ev~~~f~q~dL~~~dv~iLD~g~~IfVW~G~~as~~er--~~A~~~A~~y~~~~~~~r~~~t 304 (344)
T 2fh1_A 227 HPPRLFACSNKIGRFVIEEVPGELMQEDLATDDVMLLDTWDQVFVWVGKDSQEEEK--TEALTSAKRYIETDPANRDRRT 304 (344)
T ss_dssp CCCEEEEEECTTSSCEEEEECSSCCGGGSCTTSEEEEECSSCEEEEECTTCCHHHH--HHHHHHHHHHHHTC-------C
T ss_pred cCCEEEEEEcCCCCEEEEEccCCcCHhHCCCCCEEEEeCCCEEEEEECCCCCHHHH--HHHHHHHHHHHHhCccCCCCCC
Confidence 67999988753 4432 23 3344568999999999999999999999765421 2223333333332222464444
Q ss_pred EEEEEecCCchHHH
Q 002851 800 RILAFKEGSSQARY 813 (874)
Q Consensus 800 r~i~~~qg~sqaRf 813 (874)
.++++.||..-..|
T Consensus 305 ~i~~V~eG~Ep~~F 318 (344)
T 2fh1_A 305 PITVVKQGFEPPSF 318 (344)
T ss_dssp CEEEEETTCCCHHH
T ss_pred cEEEEcCCCCCHHH
Confidence 47788888655543
No 38
>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A
Probab=95.79 E-value=0.017 Score=63.67 Aligned_cols=82 Identities=22% Similarity=0.338 Sum_probs=55.5
Q ss_pred hccceeeecc-CCCcc--cC----CcccccccCCcEEEEeCC--cEEEEEeCCcccccccccHHHHHHHHHHHHHHHh--
Q 002851 725 VAPRCLMYRE-GGTFE--EL----PAYDLAMQSDKAVVLDHG--TDVFIWLGAELAADEGRSAAALAACRTLAEELSE-- 793 (874)
Q Consensus 725 iyP~L~~~~~-~~~~~--~l----P~~~~sl~~d~iyLLD~g--~~i~Iw~G~~v~~~~~~~~~~l~~~~~~~~~l~~-- 793 (874)
-.|+||.+++ .|.+. ++ |.....|.++.+||||+| ..||||+|+..+.++ .++..+.|++.++
T Consensus 246 ~~~rLy~vs~~~G~~~v~ev~~~~~~~q~~L~s~dv~ILD~g~~~~IyVW~G~~a~~~e------r~~A~~~A~~y~~~~ 319 (347)
T 1j72_A 246 QAAALYKVSDATGQMNLTKVADSSPFALELLISDDCFVLDNGLCGKIYIWKGRKANEKE------RQAALQVAEGFISRM 319 (347)
T ss_dssp CCCEEEEEECTTSSCEEEEEECSSSBCGGGCCTTSEEEEECGGGSEEEEEECTTCCHHH------HHHHHHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCEEEEeeccCCCCCHHHcCCCCEEEEecCCCcEEEEEeCCCCCHHH------HHHHHHHHHHHHHhc
Confidence 4799999874 34432 23 445567999999999999 999999999976542 1223344444332
Q ss_pred cCCCCcEEEEEecCCchHH
Q 002851 794 FRFPAPRILAFKEGSSQAR 812 (874)
Q Consensus 794 ~R~p~Pr~i~~~qg~sqaR 812 (874)
.|-+...+.++.||.....
T Consensus 320 ~rp~~~~i~~v~eG~Ep~~ 338 (347)
T 1j72_A 320 QYAPNTQVEILPQGRESPI 338 (347)
T ss_dssp TCCTTCEEEEEETTCCCTT
T ss_pred CCCCCCeEEEEcCCCCCHH
Confidence 4545566888889875443
No 39
>3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens}
Probab=95.72 E-value=0.0075 Score=67.10 Aligned_cols=87 Identities=24% Similarity=0.403 Sum_probs=50.7
Q ss_pred hccceeeeccC-CCc--ccCC--cccccccCCcEEEEeCCcEEEEEeCCcccccccccHHHHHHHHHHHHHHHhcCCCCc
Q 002851 725 VAPRCLMYREG-GTF--EELP--AYDLAMQSDKAVVLDHGTDVFIWLGAELAADEGRSAAALAACRTLAEELSEFRFPAP 799 (874)
Q Consensus 725 iyP~L~~~~~~-~~~--~~lP--~~~~sl~~d~iyLLD~g~~i~Iw~G~~v~~~~~~~~~~l~~~~~~~~~l~~~R~p~P 799 (874)
..|+||..++. |.+ ++++ .....|.++.+||||+|..||||+|...+..+- +..++...++++..-..|.+..
T Consensus 268 ~~~rLf~~s~~~G~~~v~ev~~~f~Q~dL~~~dv~ILD~~~~IfVW~G~~as~~Er--~~A~~~A~~yi~~~~~~r~~~t 345 (371)
T 3fg6_A 268 HPPRLYGCSNKTGRFVIEEIPGEFTQDDLAEDDVMLLDAWEQIFIWIGKDANEVEK--KESLKSAKMYLETDPSGRDKRT 345 (371)
T ss_dssp SCCEEEEEECTTSSCEEEECCSSCCGGGSCTTSEEEEECSSCEEEEECTTCCHHHH--HHHHHHHTTCC----------C
T ss_pred cCcEEEEEEcCCCcEEEEEecccccHhHCCCCCEEEEeCCCEEEEEECCCCCHHHH--HHHHHHHHHHHHhCccCCCCCC
Confidence 45899988763 544 2343 334568899999999999999999999764321 1222222222222222354444
Q ss_pred EEEEEecCCchHHH
Q 002851 800 RILAFKEGSSQARY 813 (874)
Q Consensus 800 r~i~~~qg~sqaRf 813 (874)
.+.++.||..-..|
T Consensus 346 ~i~~v~eG~Ep~~F 359 (371)
T 3fg6_A 346 PIVIIKQGHEPPTF 359 (371)
T ss_dssp CEEEEETTCCCHHH
T ss_pred CEEEecCCCCCHHH
Confidence 48888888765544
No 40
>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A
Probab=95.40 E-value=0.048 Score=60.00 Aligned_cols=87 Identities=18% Similarity=0.221 Sum_probs=64.0
Q ss_pred ccceeeeccCCC--cccCCcccccccCCcEEEEeCCcEEEEEeCCcccccccccHHHHHHHHHHHHHHH-hcCCCCcEEE
Q 002851 726 APRCLMYREGGT--FEELPAYDLAMQSDKAVVLDHGTDVFIWLGAELAADEGRSAAALAACRTLAEELS-EFRFPAPRIL 802 (874)
Q Consensus 726 yP~L~~~~~~~~--~~~lP~~~~sl~~d~iyLLD~g~~i~Iw~G~~v~~~~~~~~~~l~~~~~~~~~l~-~~R~p~Pr~i 802 (874)
.++||.++-... ..++|....+|.++.+||||+|..||+|+|+..+.++ ..+.+..|+.|. .+|.....++
T Consensus 135 ~~rL~~v~G~~~v~~~eV~~~~~sLns~d~FIL~~~~~iy~W~G~~s~~~E------r~~A~~~a~~i~~~~~~g~~~v~ 208 (347)
T 1j72_A 135 VQRLYQVKGKKNIRATERALNWDSFNTGDCFILDLGQNIFAWCGGKSNILE------RNKARDLALAIRDSERQGKAQVE 208 (347)
T ss_dssp EEEEEEEECSSSCEEEEECSSGGGCBTTSEEEEEETTEEEEEECTTCCHHH------HHHHHHHHHHHHTTSCCSSCEEE
T ss_pred CcEEEEEECCCceEEEEEeeeHHHcCCCceEEEecCCEEEEEECCCCCHHH------HHHHHHHHHHHHhhccCCCceEE
Confidence 478888864332 2245666788999999999999999999999976433 234556677775 4566778899
Q ss_pred EEecCCchHHHHHHhhc
Q 002851 803 AFKEGSSQARYFVTRLI 819 (874)
Q Consensus 803 ~~~qg~sqaRfl~srL~ 819 (874)
+++||...+.|| +-|-
T Consensus 209 ~v~EG~E~~~Fw-~~LG 224 (347)
T 1j72_A 209 IVTDGEEPAEMI-QVLG 224 (347)
T ss_dssp EEETTCCCHHHH-HHHC
T ss_pred EEeCCCCHHHHH-HHhC
Confidence 999999888886 4443
No 41
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=95.24 E-value=0.29 Score=57.97 Aligned_cols=159 Identities=11% Similarity=0.141 Sum_probs=90.0
Q ss_pred EEEEEECCCC---------hhHHHHHHHHHHHhhhc---CCCCcEEEEEEECceEEEEecCCCCcceeccccCCCCCCHH
Q 002851 276 IILVIDECLD---------EPHLQHLQSSLHAFVES---IPPTARIGIILYGRTVSVYDFSEDSIASSDVLAGDKLPTED 343 (874)
Q Consensus 276 ~vFvID~s~~---------~~~l~~l~~sL~~~L~~---Lp~~a~VGlITFd~~V~vy~l~~~~~~~~~V~~g~~~~~~~ 343 (874)
+||+||+|.+ ...|+.+++.+...++. --++.+||||.|++.-.-..++. ...+++.....++.+
T Consensus 38 ivf~IDvS~SM~~~d~~~~~srl~~a~~~v~~~i~~kii~~~~D~vGlVlfgt~~t~n~l~~---d~i~v~~~L~~~~~~ 114 (609)
T 1jey_A 38 LIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNF---KNIYVLQELDNPGAK 114 (609)
T ss_dssp EEEEEECSGGGGCCCSSSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCC---TTEEEEEEEECCCHH
T ss_pred EEEEEECCHHHcCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCeEEEEEEccCCCCCcCCC---CCeEEEecCCCCCHH
Confidence 7999999953 12688888888887764 13578999999987642111211 122233222223444
Q ss_pred HHHHHhhcCCccccchhhhHHHHHHHHHhhcCCccccccCCCCCchHHHHHHHHHHhcCCCccccccccccCCCCcEEEE
Q 002851 344 SLKALLYGTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRIIV 423 (874)
Q Consensus 344 ~l~~~l~~~~~fL~pl~e~~~~i~~lLe~L~~~~~~~~~~~r~rc~G~AL~vA~~lL~~~~~~~~~~~~~~~~~ggrIi~ 423 (874)
.++.+.. ++. .+....+... +. ......+|.||.+|..+++..... . ..-||++
T Consensus 115 ~ik~l~~----l~~--~~~~~~~~~~---~g--------~~~~t~l~daL~~a~~~f~~~~~k--------~-~~k~IiL 168 (609)
T 1jey_A 115 RILELDQ----FKG--QQGQKRFQDM---MG--------HGSDYSLSEVLWVCANLFSDVQFK--------M-SHKRIML 168 (609)
T ss_dssp HHHHHHT----TSH--HHHHHHHHHH---HC--------CSCCCCHHHHHHHHHHHHHTCSSC--------E-EEEEEEE
T ss_pred HHHHHHH----Hhh--cccchhhhhh---cC--------CCCCCCHHHHHHHHHHHHHhhchh--------h-cCCEEEE
Confidence 4332211 000 0000001110 11 013478999999999999863110 0 1458999
Q ss_pred EecCCCCCCCCcccCCCCCCCchhhhHhHHHHHHHHHHHHhhcCeEEEEeeecCC
Q 002851 424 CAGGPNTYGPGSVPHSFSHPNYLHMEKMALKWMELLGRKAHQHNAVIDILCAGNC 478 (874)
Q Consensus 424 F~sGppT~GpG~l~~~~~~~~~~~~ek~a~~fY~~La~~~~~~gisVDiF~~s~d 478 (874)
||.|-.+.|- . +....-....|+.+.+.||.|.+|.++.+
T Consensus 169 ~TDg~~p~~~-----------~----~~~~~~~~~~a~~l~~~gI~i~~igig~~ 208 (609)
T 1jey_A 169 FTNEDNPHGN-----------D----SAKASRARTKAGDLRDTGIFLDLMHLKKP 208 (609)
T ss_dssp EESCSCTTTT-----------C----HHHHHHHHHHHHHHHHHTEEEEEEEBCCT
T ss_pred EcCCCCCCCC-----------c----hHHHHHHHHHHHHHHhcCcEEEEEecCCC
Confidence 9998654421 0 11112236788999999999999987654
No 42
>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G*
Probab=94.82 E-value=0.033 Score=67.37 Aligned_cols=89 Identities=21% Similarity=0.390 Sum_probs=58.1
Q ss_pred HhhccceeeeccC-CCcc--cC--CcccccccCCcEEEEeCCcEEEEEeCCcccccccccHHHHHHHHHHHHHHHhcCCC
Q 002851 723 RMVAPRCLMYREG-GTFE--EL--PAYDLAMQSDKAVVLDHGTDVFIWLGAELAADEGRSAAALAACRTLAEELSEFRFP 797 (874)
Q Consensus 723 ~miyP~L~~~~~~-~~~~--~l--P~~~~sl~~d~iyLLD~g~~i~Iw~G~~v~~~~~~~~~~l~~~~~~~~~l~~~R~p 797 (874)
.+..|+||..++. |.|. ++ +.....|.++.+||||+|..||||+|..++..+- +..++...+.++.....|-+
T Consensus 610 ~~~~~rLf~~s~~~G~~~v~ev~~~f~Q~dL~~~dv~iLD~~~eifvWiG~~a~~~er--~~al~~A~~Y~~~~~~~r~~ 687 (729)
T 1d0n_A 610 DAHPPRLFACSNKIGRFVIEEVPGEFMQEDLATDDVMLLDTWDQVFVWVGKDSQDEEK--TEALTSAKRYIDTDPAHRDR 687 (729)
T ss_dssp HHSCCEEEEEECTTTCCEEEECCSSCCGGGCCTTSEEEEECSSCEEEEECTTSCHHHH--SSHHHHHHHHHHHCTTCCCT
T ss_pred cccCCeEEEEEcCCCcEEEEEecCcccHhHCCCCCEEEEeCCCEEEEEECCCCCHHHH--HHHHHHHHHHHHhCcccCCC
Confidence 4678999998753 4442 22 3334568899999999999999999999765422 23334444555544345654
Q ss_pred CcEEEEEecCCchHHH
Q 002851 798 APRILAFKEGSSQARY 813 (874)
Q Consensus 798 ~Pr~i~~~qg~sqaRf 813 (874)
...++++.+|..-..|
T Consensus 688 ~~pi~~V~~G~Ep~~F 703 (729)
T 1d0n_A 688 RTPITVVKQGFEPPSF 703 (729)
T ss_dssp TCCEEEEETTCCCHHH
T ss_pred CCcEEEEeCCCCCHHH
Confidence 3446777788654443
No 43
>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G*
Probab=94.15 E-value=0.12 Score=62.55 Aligned_cols=88 Identities=18% Similarity=0.298 Sum_probs=64.7
Q ss_pred hccceeeeccCCC--cccCCcccccccCCcEEEEeCCcEEEEEeCCcccccccccHHHHHHHHHHHHHHHh-cCCCCcEE
Q 002851 725 VAPRCLMYREGGT--FEELPAYDLAMQSDKAVVLDHGTDVFIWLGAELAADEGRSAAALAACRTLAEELSE-FRFPAPRI 801 (874)
Q Consensus 725 iyP~L~~~~~~~~--~~~lP~~~~sl~~d~iyLLD~g~~i~Iw~G~~v~~~~~~~~~~l~~~~~~~~~l~~-~R~p~Pr~ 801 (874)
-.++||.+.-... ..++|+...||.++.+||||+|..||+|+|+..+..+ ..+.+..|+.|.. +|.....+
T Consensus 132 ~~~rL~~vkG~~~v~~~eV~~s~~SLns~DvFILd~g~~iy~W~G~~s~~~E------r~kA~~~a~~i~~~er~g~~~i 205 (729)
T 1d0n_A 132 VVQRLLQVKGRRVVRATEVPVSWESFNNGDCFILDLGNNIYQWCGSKSNRFE------RLKATQVSKGIRDNERSGRAQV 205 (729)
T ss_dssp CCCEEEEEECSSSCEEEEECSSGGGCCSSSEEEEECSSEEEEEECTTCCHHH------HHHHHHHHHHHHHHSGGGCSEE
T ss_pred CCcEEEEEECCCcEEEEEEeccHHHcCCCCeEEEEcCCEEEEEECCCCCHHH------HHHHHHHHHHHhhhhcCCCccE
Confidence 3578888764322 2245667789999999999999999999999965332 2345667777773 77777789
Q ss_pred EEEecCCchHHHHHHhhc
Q 002851 802 LAFKEGSSQARYFVTRLI 819 (874)
Q Consensus 802 i~~~qg~sqaRfl~srL~ 819 (874)
+++++|...+.||. -|-
T Consensus 206 ~~v~Eg~e~~eFw~-~LG 222 (729)
T 1d0n_A 206 SVFEEGAEPEAMLQ-VLG 222 (729)
T ss_dssp EEEETTCCCHHHHH-HHC
T ss_pred EEecCCCChHHHHH-HcC
Confidence 99999997777764 443
No 44
>2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A
Probab=93.83 E-value=0.1 Score=57.27 Aligned_cols=78 Identities=22% Similarity=0.370 Sum_probs=55.9
Q ss_pred ccceeeeccCC--C--cccCCcccccccCCcEEEEeCCcEEEEEeCCcccccccccHHHHHHHHHHHHHHHhcCCCCcEE
Q 002851 726 APRCLMYREGG--T--FEELPAYDLAMQSDKAVVLDHGTDVFIWLGAELAADEGRSAAALAACRTLAEELSEFRFPAPRI 801 (874)
Q Consensus 726 yP~L~~~~~~~--~--~~~lP~~~~sl~~d~iyLLD~g~~i~Iw~G~~v~~~~~~~~~~l~~~~~~~~~l~~~R~p~Pr~ 801 (874)
.++||.++-.. . ..++|....+|.++.+||||++..||+|+|...+..+ .++.+..|+.| + ..+
T Consensus 124 ~~rL~~v~g~~~~~~~~~eV~~~~ssLns~d~FIL~~~~~iyvW~G~~s~~~e------r~~A~~~a~~l---~---~~i 191 (344)
T 2fh1_A 124 STRLFQVRANSAGATRAVEVLPKAGALNSNDAFVLKTPSAAYLWVGTGASEAE------KTGAQELLRVL---R---AQP 191 (344)
T ss_dssp SSEEEEEEECTTCCEEEEEECCSGGGCBTTSEEEEECSSCEEEEECTTCCHHH------HHHHHHHHHHT---T---CCC
T ss_pred CceEEEEECCCCCceEEEEecCchhhcCCCceEEEecCCEEEEEECCCCCHHH------HHHHHHHHHHh---C---CCc
Confidence 57899887433 1 2245666788999999999999999999999975432 12334555555 2 347
Q ss_pred EEEecCCchHHHHH
Q 002851 802 LAFKEGSSQARYFV 815 (874)
Q Consensus 802 i~~~qg~sqaRfl~ 815 (874)
.++++|...+.||.
T Consensus 192 ~~v~EG~E~~~Fw~ 205 (344)
T 2fh1_A 192 VQVAEGSEPDGFWE 205 (344)
T ss_dssp EEEETTCCCHHHHH
T ss_pred EEEeCCCCcHHHHH
Confidence 88899988778774
No 45
>3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens}
Probab=93.32 E-value=0.19 Score=55.85 Aligned_cols=78 Identities=19% Similarity=0.328 Sum_probs=55.7
Q ss_pred ccceeeeccCCC----cccCCcccccccCCcEEEEeCC-cEEEEEeCCcccccccccHHHHHHHHHHHHHHHhcCCCCcE
Q 002851 726 APRCLMYREGGT----FEELPAYDLAMQSDKAVVLDHG-TDVFIWLGAELAADEGRSAAALAACRTLAEELSEFRFPAPR 800 (874)
Q Consensus 726 yP~L~~~~~~~~----~~~lP~~~~sl~~d~iyLLD~g-~~i~Iw~G~~v~~~~~~~~~~l~~~~~~~~~l~~~R~p~Pr 800 (874)
.++||.++..+. ..+++....+|.++.+||||+| ..||+|+|+..+.++ .++.+..|+.|.. +
T Consensus 165 ~~rL~~vrg~~~~~vr~~EV~~~~ssLns~d~FILd~~~~~iyvW~G~~ss~~E------r~~A~~~a~~i~~------~ 232 (371)
T 3fg6_A 165 PTRLFQVRRNLASITRIVEVDVDANSLNSNDVFVLKLPQNSGYIWVGKGASQEE------EKGAEYVASVLKC------K 232 (371)
T ss_dssp CCEEEEEECCSSSCCEEEEECSSGGGCBTTSEEEEECTTSEEEEEECTTCCHHH------HHHHHHHHHHTTC------E
T ss_pred ccEEEEEeccCCCceEEEEecCCHHHccCCCeEEEEcCCCeEEEEECCCCCHHH------HHHHHHHHHHhcC------C
Confidence 579999865422 2245666788999999999999 999999999975332 2234555655532 2
Q ss_pred EEEEecCCchHHHHH
Q 002851 801 ILAFKEGSSQARYFV 815 (874)
Q Consensus 801 ~i~~~qg~sqaRfl~ 815 (874)
.+++++|...+.||.
T Consensus 233 ~~~v~EG~Ep~~Fw~ 247 (371)
T 3fg6_A 233 TLRIQEGEEPEEFWN 247 (371)
T ss_dssp EEEEETTCCCHHHHH
T ss_pred eEEEeCCCCCHHHHH
Confidence 467899988788874
No 46
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=93.25 E-value=0.14 Score=63.06 Aligned_cols=45 Identities=11% Similarity=0.382 Sum_probs=35.2
Q ss_pred cEEEEEECCCC--hh------HHHHHHHHHHHhhhcCC--CCcEEEEEEECceEE
Q 002851 275 PIILVIDECLD--EP------HLQHLQSSLHAFVESIP--PTARIGIILYGRTVS 319 (874)
Q Consensus 275 ~~vFvID~s~~--~~------~l~~l~~sL~~~L~~Lp--~~a~VGlITFd~~V~ 319 (874)
-+|||||+|.+ .. .++.++++++..|+.|. ++.+||||+|++.+.
T Consensus 226 DIVfVLD~SGSM~~~~~~~~~Rl~~~K~a~~~~ld~L~~~~~drVgLV~Fs~~a~ 280 (893)
T 2ww8_A 226 DVVILLDNSNSMSNIRNKNARRAERAGEATRSLIDKITSDSENRVALVTYASTIF 280 (893)
T ss_dssp EEEEEEECCGGGCTTHHHHCCHHHHHHHHHHHHHHHHHTSTTCEEEEEEESSSBC
T ss_pred cEEEEEeCCCCCCCcCccchhHHHHHHHHHHHHHHHhhcCCCcEEEEEEecCccc
Confidence 46999999964 22 47788888888887764 589999999998653
No 47
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=92.05 E-value=1.2 Score=53.21 Aligned_cols=232 Identities=14% Similarity=0.113 Sum_probs=106.9
Q ss_pred EEEEEECCCC-hhHHHHHHH---HHHHhhhcCCCCcEEEEEEECceEEEEecCCCCcceeccccCCCCCCHH-HHHHHhh
Q 002851 276 IILVIDECLD-EPHLQHLQS---SLHAFVESIPPTARIGIILYGRTVSVYDFSEDSIASSDVLAGDKLPTED-SLKALLY 350 (874)
Q Consensus 276 ~vFvID~s~~-~~~l~~l~~---sL~~~L~~Lp~~a~VGlITFd~~V~vy~l~~~~~~~~~V~~g~~~~~~~-~l~~~l~ 350 (874)
++||+|+|.+ ..+++.||+ .|.+.|..+-.+.|+||.+|-..+-. ........++. +.|-.. ...-...
T Consensus 114 ly~LmD~S~SM~ddi~~lk~l~~~l~~~l~~~t~~~r~Gfgsf~Dk~~~---P~~~~~p~~~~---~~pc~~~~~~c~~~ 187 (690)
T 3fcs_B 114 IYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVS---PYMYISPPEAL---ENPCYDMKTTCLPM 187 (690)
T ss_dssp EEEEEECSGGGHHHHHHTTTTTHHHHHHHHHHCSCEEEEEEEECCCSST---TTSCCCSTTTT---TCTTSSSSSCCCCC
T ss_pred EEEEecCCcchHHHHHHHHHHHHHHHHHHHhhCcCceEEeEEeeccccC---CccccChhhhc---cCCCcCCCCCCCCC
Confidence 4899999987 455666554 45555666678999999999553311 10000000000 000000 0000000
Q ss_pred cCCccccchhhhHHHHHHHHHhhcCCccccccCCCCCchHHHHHHHH--HHhcCCCccccccccccCCCCcEEEEEecCC
Q 002851 351 GTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVAL--AIIQGPSAEMSRGVVKRPGGNSRIIVCAGGP 428 (874)
Q Consensus 351 ~~~~fL~pl~e~~~~i~~lLe~L~~~~~~~~~~~r~rc~G~AL~vA~--~lL~~~~~~~~~~~~~~~~~ggrIi~F~sGp 428 (874)
..-+.+.++.+....+.+.++.+.-. .+. ..++..+-+.+++|+ .-+.= ....-|||+|++-.
T Consensus 188 f~f~~~l~lt~~~~~f~~~v~~~~is-gn~--D~PE~g~dAl~qa~~c~~~igW------------r~~a~rllv~~TDa 252 (690)
T 3fcs_B 188 FGYKHVLTLTDQVTRFNEEVKKQSVS-RNR--DAPEGGFDAIMQATVCDEKIGW------------RNDASHLLVFTTDA 252 (690)
T ss_dssp CSEEEEEEEESCHHHHHHHHTTCCCC-CCS--SSSBCHHHHHHHHHHCHHHHTC------------CSSSEEEEEEEESS
T ss_pred ccceeecccCCCHHHHHHHhhceecc-CCC--CCCchHHHHHHHHhhcccccCC------------CCCceEEEEEECCC
Confidence 00011345555566666666665432 111 112344544555553 33321 11357999988644
Q ss_pred CC--CCCCcccCCCCC---------CCchhhhHhHHHH--HHHHHHHHhhcCeEEEEeeecCCCCCcccchhhhcc-ccc
Q 002851 429 NT--YGPGSVPHSFSH---------PNYLHMEKMALKW--MELLGRKAHQHNAVIDILCAGNCPVRVPVLQPLAKA-SGG 494 (874)
Q Consensus 429 pT--~GpG~l~~~~~~---------~~~~~~ek~a~~f--Y~~La~~~~~~gisVDiF~~s~d~vglaem~~l~~~-TGG 494 (874)
+- .|-|++-..... .+. |......+| ..+|.+++.+++|.+ ||+.....++++ +.|++. +|+
T Consensus 253 ~~H~agDg~l~gi~~pnd~~chl~~~~~-y~~s~~~DypSi~ql~~~l~~~~i~~-ifavt~~~~~~y--~~l~~~i~~s 328 (690)
T 3fcs_B 253 KTHIALDGRLAGIVQPNDGQCHVGSDNH-YSASTTMDYPSLGLMTEKLSQKNINL-IFAVTENVVNLY--QNYSELIPGT 328 (690)
T ss_dssp CBCCTTGGGGGTCCSCCCCCCCBCTTCB-BGGGGTSCCCCHHHHHHHHHHTTCEE-EEEEEGGGHHHH--HHHHHHSTTC
T ss_pred ccccCCCccccceecCCCcceeecCCCc-cccccccCCCCHHHHHHHHHHcCCeE-EEEEeCCchhhH--HHHHhhcCCc
Confidence 43 366665421110 111 110111111 356788888898844 666555554433 344433 455
Q ss_pred EEEEcCChhh---HHHHHHHHHHhhccCcceEEEEEe-CCCeeEEE
Q 002851 495 VLVLHDDFGE---AFGVNLQRASTRAAGSHGFLEIRC-SDDILVTQ 536 (874)
Q Consensus 495 ~v~~~~~F~~---~f~~dl~r~~~~~~g~~a~l~VR~-S~glkV~~ 536 (874)
.+-....-+. .+..+-++.+ .....|++.. .++++|+-
T Consensus 329 ~v~~l~~dSsni~~li~~~y~~i----~s~v~l~~~~~p~~~~v~~ 370 (690)
T 3fcs_B 329 TVGVLSMDSSNVLQLIVDAYGKI----RSKVELEVRDLPEELSLSF 370 (690)
T ss_dssp EEEEECTTCTTHHHHHHHHHHHH----TTCEEEEEESCCTTEEEEE
T ss_pred eeeeeccccHHHHHHHHHHHHhh----hcceeeeccCCCCcceEEE
Confidence 5544433222 1222222222 2445565544 56777663
No 48
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=91.76 E-value=0.12 Score=53.53 Aligned_cols=45 Identities=7% Similarity=0.261 Sum_probs=37.6
Q ss_pred CCcEEEEEECCCC-hhHHHHHHHHHHHhhhcCC---CCcEEEEEEECce
Q 002851 273 SAPIILVIDECLD-EPHLQHLQSSLHAFVESIP---PTARIGIILYGRT 317 (874)
Q Consensus 273 ~p~~vFvID~s~~-~~~l~~l~~sL~~~L~~Lp---~~a~VGlITFd~~ 317 (874)
+..+|||||+|.+ .+.++.+|+++...+..++ .+.+||||+|+..
T Consensus 134 ~~~vvfLVDtSgSM~~kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~ 182 (242)
T 3rag_A 134 ALHLVVCLDTSASMRDKIPTVREAVRDLALSLKVRSGPLAVSVIAFPGK 182 (242)
T ss_dssp CEEEEEEEECSGGGTTTHHHHHHHHHHHHHHHTTSSSCEEEEEEEESCS
T ss_pred CCCEEEEEECcccHHHHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCC
Confidence 3467999999975 4679999999999988765 5789999999865
No 49
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=90.25 E-value=0.6 Score=54.34 Aligned_cols=101 Identities=8% Similarity=0.010 Sum_probs=56.5
Q ss_pred CcEEEEEECCCChh------HHHHHHHHHHHhhhcCCCCcEEEEEEECceEEEEecCCCCcceeccccCCCCCCHHHHHH
Q 002851 274 APIILVIDECLDEP------HLQHLQSSLHAFVESIPPTARIGIILYGRTVSVYDFSEDSIASSDVLAGDKLPTEDSLKA 347 (874)
Q Consensus 274 p~~vFvID~s~~~~------~l~~l~~sL~~~L~~Lp~~a~VGlITFd~~V~vy~l~~~~~~~~~V~~g~~~~~~~~l~~ 347 (874)
..++||||+|.+-. .++....++...+..+..+.+||||+|++.+....+.. . ..
T Consensus 369 ~~v~lvvD~SgSM~~~~~~~~l~~~~~Aa~l~~~~~~~~d~vglv~Fs~~~~~~~~t~-----------~-----~~--- 429 (538)
T 1yvr_A 369 KRFLLAIDVSASMNQRVLGSILNASVVAAAMCMLVARTEKDSHMVAFSDEMLPCPITV-----------N-----ML--- 429 (538)
T ss_dssp CCEEEEEECSGGGGSBSTTSSCBHHHHHHHHHHHHHHHCSSEEEEEESSSEECCSCCT-----------T-----SC---
T ss_pred ceEEEEEECccccCCCCCCCcHHHHHHHHHHHHHHhccCCceEEEEECCCceEcCCCC-----------c-----cc---
Confidence 46899999997521 13332222222333334577899999996432111100 0 00
Q ss_pred HhhcCCccccchhhhHHHHHHHHHhhcCCccccccCCCCCchHHHHHHHHHHhcCCCccccccccccCCCCcEEEEEecC
Q 002851 348 LLYGTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRIIVCAGG 427 (874)
Q Consensus 348 ~l~~~~~fL~pl~e~~~~i~~lLe~L~~~~~~~~~~~r~rc~G~AL~vA~~lL~~~~~~~~~~~~~~~~~ggrIi~F~sG 427 (874)
+..+++.|... . ...+.+|.||..|...-. ....|+++++|
T Consensus 430 ------------------l~~~l~~l~~~--~----~GgT~i~~aL~~a~~~~~---------------~~~~iIliTDg 470 (538)
T 1yvr_A 430 ------------------LHEVVEKMSDI--T----MGSTDCALPMLWAQKTNT---------------AADIFIVFTDC 470 (538)
T ss_dssp ------------------HHHHHHHHTTC--C----CSCCCTTHHHHHHHHTTC---------------CCSEEEEEECC
T ss_pred ------------------HHHHHHHHhcC--C----CCCCcHHHHHHHHHhccC---------------CCCEEEEEcCC
Confidence 23344555432 1 124778889998877521 24789999999
Q ss_pred CCCCC
Q 002851 428 PNTYG 432 (874)
Q Consensus 428 ppT~G 432 (874)
-.+.|
T Consensus 471 ~~~~g 475 (538)
T 1yvr_A 471 ETNVE 475 (538)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 87654
No 50
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=88.58 E-value=37 Score=38.43 Aligned_cols=230 Identities=13% Similarity=0.114 Sum_probs=107.0
Q ss_pred EEEEEECCCC-hhHHHHHH---HHHHHhhhcCCCCcEEEEEEEC-ceEEEE-ecCCCC-cceeccccCCCCCCHHHHHHH
Q 002851 276 IILVIDECLD-EPHLQHLQ---SSLHAFVESIPPTARIGIILYG-RTVSVY-DFSEDS-IASSDVLAGDKLPTEDSLKAL 348 (874)
Q Consensus 276 ~vFvID~s~~-~~~l~~l~---~sL~~~L~~Lp~~a~VGlITFd-~~V~vy-~l~~~~-~~~~~V~~g~~~~~~~~l~~~ 348 (874)
++|++|+|.+ ..+++.|| ..|...|..+-.+.|+||.+|- +.|.=| +..... +... -......-.+.
T Consensus 114 Ly~LmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~~riGfgsFvDk~v~P~~~~~p~~~l~nP-c~~~~~~c~p~----- 187 (472)
T 3t3p_B 114 IYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPEALENP-CYDMKTTCLPM----- 187 (472)
T ss_dssp EEEEEECSGGGHHHHHHTTTHHHHHHHHHTTTCSCEEEEEEEECCCSSTTTSCCCSHHHHHCT-TTTTTSCCCCC-----
T ss_pred EEEEEccCcchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeccccCccccCChhhhhcCC-CcccccCCCCC-----
Confidence 4899999987 34555555 4555566667789999999994 433111 100000 0000 00000000000
Q ss_pred hhcCCccccchhhhHHHHHHHHHhhcCCccccccCCCCCchHHHHHHHH--HHhcCCCccccccccccCCCCcEEEEEec
Q 002851 349 LYGTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVAL--AIIQGPSAEMSRGVVKRPGGNSRIIVCAG 426 (874)
Q Consensus 349 l~~~~~fL~pl~e~~~~i~~lLe~L~~~~~~~~~~~r~rc~G~AL~vA~--~lL~~~~~~~~~~~~~~~~~ggrIi~F~s 426 (874)
+ .-+.+.++.+....+.+.++.+.-. ++. ..++..+-+-+++|+ .-+.= .....|+++|++
T Consensus 188 -f-~fr~~l~LT~d~~~F~~~V~~~~iS-Gn~--D~PEgg~dAl~qaavC~~~igW------------R~~a~rllV~~T 250 (472)
T 3t3p_B 188 -F-GYKHVLTLTDQVTRFNEEVKKQSVS-RNR--DAPEGGFDAIMQATVCDEKIGW------------RNDASHLLVFTT 250 (472)
T ss_dssp -C-SEEEEEEEESCHHHHHHHHHHCCCC-CCS--SSSBCHHHHHHHHHHCHHHHTC------------CSSSEEEEEEEE
T ss_pred -c-ceeEeeccCCCHHHHHHHHhhcccc-CCC--CCCchHHHHHHHHhcchhhcCC------------CCCceEEEEEEC
Confidence 0 0011346666666677777765442 221 122355555555654 23321 113579999986
Q ss_pred CCC--CCCCCcccCC----CCC----CCchhhhHhHHHH--HHHHHHHHhhcCeEEEEeeecCCCCCcccchhhhccc-c
Q 002851 427 GPN--TYGPGSVPHS----FSH----PNYLHMEKMALKW--MELLGRKAHQHNAVIDILCAGNCPVRVPVLQPLAKAS-G 493 (874)
Q Consensus 427 Gpp--T~GpG~l~~~----~~~----~~~~~~ek~a~~f--Y~~La~~~~~~gisVDiF~~s~d~vglaem~~l~~~T-G 493 (874)
-.+ ..|-|++-.- +.+ .+-.|......+| ...|.+++.+++|.+ ||+....+..++ +.|++.- |
T Consensus 251 Da~~H~agDgkL~GIv~pnDg~CHL~~~~~Y~~s~~~DYPSv~ql~~~l~e~nI~~-IFAVt~~~~~~Y--~~L~~~ip~ 327 (472)
T 3t3p_B 251 DAKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINL-IFAVTENVVNLY--QNYSELIPG 327 (472)
T ss_dssp SSCBCCTTGGGGGTCCCCCCCCCCBCTTCBBTTTTTSCCCCHHHHHHHHHHTTCEE-EEEECGGGHHHH--HHHHHTSTT
T ss_pred CCCcCcCCCccccceecCCCCceEECCCCcccccccCCCCCHHHHHHHHHhcCccE-EEEEeccchhHH--HHHHHhCCC
Confidence 443 3477766421 100 0100110000111 356778888888654 777766654443 3444433 3
Q ss_pred cEEEEcCChhh---HHHHHHHHHHhhccCcceEEEEEe-CCCeeEE
Q 002851 494 GVLVLHDDFGE---AFGVNLQRASTRAAGSHGFLEIRC-SDDILVT 535 (874)
Q Consensus 494 G~v~~~~~F~~---~f~~dl~r~~~~~~g~~a~l~VR~-S~glkV~ 535 (874)
+.+-....-+. .+..+-+..+ .....|+... .++++|+
T Consensus 328 s~vg~L~~dSsNiv~LI~~aY~~i----~s~V~l~~~~~p~~l~v~ 369 (472)
T 3t3p_B 328 TTVGVLSMDSSNVLQLIVDAYGKI----RSKVELEVRDLPEELSLS 369 (472)
T ss_dssp CEEEECCTTSTTHHHHHHHHHHHH----TTCEEEEEESCCTTEEEE
T ss_pred ceeeeccccchhHHHHHHHHHHHh----heEEEEeeCCCCCcEEEE
Confidence 33333322111 2223333322 2345555543 5567765
No 51
>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A
Probab=86.96 E-value=0.12 Score=57.86 Aligned_cols=79 Identities=22% Similarity=0.392 Sum_probs=0.0
Q ss_pred ccceeeeccCCC----cccCCcccccccCCcEEEEeCCcEEEEEeCCcccccccccHHHHHHHHHHHHHHHhcCCCCcEE
Q 002851 726 APRCLMYREGGT----FEELPAYDLAMQSDKAVVLDHGTDVFIWLGAELAADEGRSAAALAACRTLAEELSEFRFPAPRI 801 (874)
Q Consensus 726 yP~L~~~~~~~~----~~~lP~~~~sl~~d~iyLLD~g~~i~Iw~G~~v~~~~~~~~~~l~~~~~~~~~l~~~R~p~Pr~ 801 (874)
.++||.+..... ..++|....+|.++.+||||+|..||+|+|+..+.++- ++.+..|+.|.. ..+
T Consensus 178 ~~rLf~VrG~~~~~~ra~EV~~s~sSLns~d~FILd~~~~iyvW~G~~ss~~Er------~~A~~va~~i~~-----~~~ 246 (398)
T 3fg7_A 178 STRLFQVQGTGANNTKAFEVPARANFLNSNDVFVLKTQSCCYLWCGKGCSGDER------EMAKMVADTISR-----TEK 246 (398)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcEEEEEECCCCCceEEEEecCCHHHccCCceEEEEeCCeEEEEeCCCCCHHHH------HHHHHHHHHhcC-----CcE
Confidence 467777654321 12466667889999999999999999999999764432 123344444421 245
Q ss_pred EEEecCCchHHHHH
Q 002851 802 LAFKEGSSQARYFV 815 (874)
Q Consensus 802 i~~~qg~sqaRfl~ 815 (874)
.++++|...+.||.
T Consensus 247 ~~v~EG~Ep~~Fw~ 260 (398)
T 3fg7_A 247 QVVVEGQEPANFWM 260 (398)
T ss_dssp --------------
T ss_pred EEEeCCCCchhHHH
Confidence 67788877677764
No 52
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=85.09 E-value=7.9 Score=44.15 Aligned_cols=187 Identities=15% Similarity=0.148 Sum_probs=93.5
Q ss_pred EEEEEECCCC-hhHHHHHH---HHHHHhhhcCCCCcEEEEEEE-CceEEEEecCCCCcceeccccCCCCCCHHHHHHHhh
Q 002851 276 IILVIDECLD-EPHLQHLQ---SSLHAFVESIPPTARIGIILY-GRTVSVYDFSEDSIASSDVLAGDKLPTEDSLKALLY 350 (874)
Q Consensus 276 ~vFvID~s~~-~~~l~~l~---~sL~~~L~~Lp~~a~VGlITF-d~~V~vy~l~~~~~~~~~V~~g~~~~~~~~l~~~l~ 350 (874)
++|++|+|.+ ..+++.|| ..|...|..+-.+.|+||.+| |+.|.=| .. ..++.++..-.
T Consensus 135 LyyLmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~~RiGfGsFvDK~v~P~--~~--------------~~p~~l~~PC~ 198 (503)
T 3v4v_B 135 LYYLMDLSYSMKDDLERVRQLGHALLVRLQEVTHSVRIGFGSFVDKTVLPF--VS--------------TVPSKLRHPCP 198 (503)
T ss_dssp EEEEEECSGGGHHHHHHHHHSSHHHHHHHTTTCSCEEEEEEEECCCSSTTT--SC--------------CCHHHHHCCSS
T ss_pred EEEEEecCcchhhHHHHHHHHHHHHHHHHHhhCcCcEEeeeeecccccCCc--cc--------------CCHHHhcCCCc
Confidence 4899999987 44566555 456666777778999999999 4433100 00 01111111000
Q ss_pred ---------cCCccccchhhhHHHHHHHHHhhcCCccccccCCCCCchHHHHHHHH--HHhcCCCccccccccccCCCCc
Q 002851 351 ---------GTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVAL--AIIQGPSAEMSRGVVKRPGGNS 419 (874)
Q Consensus 351 ---------~~~~fL~pl~e~~~~i~~lLe~L~~~~~~~~~~~r~rc~G~AL~vA~--~lL~~~~~~~~~~~~~~~~~gg 419 (874)
..-+.+.++.+....+.+.+..+.-. ++. ..++..+.+-+++|+ .-+.= .. ..
T Consensus 199 ~~~~~c~p~f~fr~~l~LT~d~~~F~~~V~~~~iS-Gnl--D~PEggfDAlmQaavC~~~IgW------------R~-a~ 262 (503)
T 3v4v_B 199 TRLERCQSPFSFHHVLSLTGDAQAFEREVGRQSVS-GNL--DSPEGGFDAILQAALCQEQIGW------------RN-VS 262 (503)
T ss_dssp CSSSCCCCCCSEEEEEEEESCSHHHHHHHTTCCCC-CCS--SSSBCHHHHHHHHHHCHHHHTC------------CS-SE
T ss_pred CCCCCCCCCcceEEEEEecCCHHHHHHHHhhcCcc-CCC--CCCchHHHHHHHHhhcccccCC------------Cc-ce
Confidence 00011345555555566666554332 221 122355655556664 23321 12 57
Q ss_pred EEEEEecCCC--CCCCCcccCC----CCC-----CCchhhhHhHHHH--HHHHHHHHhhcCeEEEEeeecCCCCCcccch
Q 002851 420 RIIVCAGGPN--TYGPGSVPHS----FSH-----PNYLHMEKMALKW--MELLGRKAHQHNAVIDILCAGNCPVRVPVLQ 486 (874)
Q Consensus 420 rIi~F~sGpp--T~GpG~l~~~----~~~-----~~~~~~ek~a~~f--Y~~La~~~~~~gisVDiF~~s~d~vglaem~ 486 (874)
|+++|++-.+ ..|-|++-.- +.+ .+. |......+| ...|.+++.+++|.+ ||+....+++++ +
T Consensus 263 rllV~~TDA~fH~agDgkLaGIv~pNDg~CHL~~~~~-Yt~s~~~DYPSv~ql~~kL~ennI~~-IFAVt~~~~~~Y--~ 338 (503)
T 3v4v_B 263 RLLVFTSDDTFHTAGDGKLGGIFMPSDGHCHLDSNGL-YSRSTEFDYPSVGQVAQALSAANIQP-IFAVTSAALPVY--Q 338 (503)
T ss_dssp EEEEEEESSCBCCTTGGGTTTCCSCCCSSCCBCTTSB-BGGGGGSCCCCHHHHHHHHHHHTEEE-EEEECSSSHHHH--H
T ss_pred EEEEEECCCCcCcCCCccccceecCCCCCeEECCCCc-cccccccCCCCHHHHHHHHHhcCCeE-EEEEcccchhHH--H
Confidence 9999986333 3477766421 110 111 110000111 256778888888844 688777665543 3
Q ss_pred hhhccc-ccEEEE
Q 002851 487 PLAKAS-GGVLVL 498 (874)
Q Consensus 487 ~l~~~T-GG~v~~ 498 (874)
.|++.- |+.+-.
T Consensus 339 ~L~~~ip~s~vg~ 351 (503)
T 3v4v_B 339 ELSKLIPKSAVGE 351 (503)
T ss_dssp HHHTTSTTCEEEE
T ss_pred HHHHhCCCceeeE
Confidence 444443 333333
No 53
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=79.88 E-value=84 Score=35.32 Aligned_cols=189 Identities=15% Similarity=0.179 Sum_probs=94.2
Q ss_pred EEEEEECCCC-hhHHHHHH---HHHHHhhhcCCCCcEEEEEEE-CceEEEE-ecCCCCcc-eeccccCCCCCCHHHHHHH
Q 002851 276 IILVIDECLD-EPHLQHLQ---SSLHAFVESIPPTARIGIILY-GRTVSVY-DFSEDSIA-SSDVLAGDKLPTEDSLKAL 348 (874)
Q Consensus 276 ~vFvID~s~~-~~~l~~l~---~sL~~~L~~Lp~~a~VGlITF-d~~V~vy-~l~~~~~~-~~~V~~g~~~~~~~~l~~~ 348 (874)
.+|++|+|.+ ..+++.|| ..|...|..+-.+.|+||.+| |+.|.=| +....... -.. +...-.+.
T Consensus 125 LyyLmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~~riGfGsFvDK~v~P~~~t~p~~~~nPC~---~~~~c~~~----- 196 (454)
T 3vi3_B 125 LYYLMDLSYSMKDDLENVKSLGTDLMNEMRRITSDFRIGFGSFVEKTVMPYISTTPAKLRNPCT---SEQNCTTP----- 196 (454)
T ss_dssp EEEEEECSGGGHHHHHHHTTHHHHHHHHHTTTCSSEEEEEEEECCCSSTTTSCCSTTTTTCCSC---SSSCCCCC-----
T ss_pred EEEEecCCcchhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeccccCCcccCChHHhcCCCc---CccCCCCC-----
Confidence 3899999987 44555555 556666667778999999999 4433211 11111000 000 00000000
Q ss_pred hhcCCccccchhhhHHHHHHHHHhhcCCccccccCCCCCchHHHHHHHHH--HhcCCCccccccccccCCCCcEEEEEec
Q 002851 349 LYGTGVYLSPMHASKQVAHDIFSSLRPYKLNITEASRDRCLGTAVEVALA--IIQGPSAEMSRGVVKRPGGNSRIIVCAG 426 (874)
Q Consensus 349 l~~~~~fL~pl~e~~~~i~~lLe~L~~~~~~~~~~~r~rc~G~AL~vA~~--lL~~~~~~~~~~~~~~~~~ggrIi~F~s 426 (874)
+ .-+.+.++.+....+.+.++.+.-. ++. ..++..+-+-+++|+- -+.= .. .-|+++|++
T Consensus 197 -f-~fr~~l~LT~d~~~F~~~V~~~~is-Gn~--D~PEgg~DAl~Qaavc~~~igW------------R~-a~rllV~~T 258 (454)
T 3vi3_B 197 -F-SYKNVLSLTNKGEVFNELVGKQRIS-GNL--DSPEGGFDAIMQVAVCGSLIGW------------RN-VTRLLVFST 258 (454)
T ss_dssp -C-SEEEEEEEESCHHHHHHHHTTCCCC-CCS--SSSBCHHHHHHHHHHCHHHHTC------------CS-SEEEEEEEE
T ss_pred -c-ceeeeeecCCCHHHHHHHHhhcccc-CCC--cCCchhHHHHHHHhccccccCC------------cc-ceEEEEEEC
Confidence 0 0011456666666677777764432 221 1223556555566652 2221 22 568999986
Q ss_pred CCC--CCCCCcccCCCCC--------CCchhhhHhHHHH--HHHHHHHHhhcCeEEEEeeecCCCCCcccchhhhccccc
Q 002851 427 GPN--TYGPGSVPHSFSH--------PNYLHMEKMALKW--MELLGRKAHQHNAVIDILCAGNCPVRVPVLQPLAKASGG 494 (874)
Q Consensus 427 Gpp--T~GpG~l~~~~~~--------~~~~~~ek~a~~f--Y~~La~~~~~~gisVDiF~~s~d~vglaem~~l~~~TGG 494 (874)
-.+ ..|-|++-.-... .+. |......+| ...|++++.+++|.+ ||+....+..++ +.|++.-+|
T Consensus 259 Da~fH~agDgkL~GIv~PNDg~CHL~~~~-Yt~s~~~DYPSv~ql~~~l~e~nI~~-IFAVt~~~~~~Y--~~L~~~ip~ 334 (454)
T 3vi3_B 259 DAGFHFAGDGKLGGIVLPNDGQCHLENNM-YTMSHYYDYPSIAHLVQKLSENNIQT-IFAVTEEFQPVY--KELKNLIPK 334 (454)
T ss_dssp SSCBCCTTTTGGGTCCSCCCCCCCEETTE-ECCTTTSCCCCHHHHHHHHHHTTEEE-EEEEEGGGHHHH--HHHHHHSTT
T ss_pred CCCcCcCCCccccceecCCCCccEeCCCc-ccccccCCCCCHHHHHHHHHhcCCcE-EEEEcCccchHH--HHHHHhCCC
Confidence 433 3588887531110 010 100000111 356888888888755 777766665544 344444333
No 54
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=79.05 E-value=4.7 Score=46.71 Aligned_cols=32 Identities=9% Similarity=-0.047 Sum_probs=22.3
Q ss_pred CCchHHHHHHHHHHhcCCCccccccccccCCCCcEEEEEecCCCCCC
Q 002851 386 DRCLGTAVEVALAIIQGPSAEMSRGVVKRPGGNSRIIVCAGGPNTYG 432 (874)
Q Consensus 386 ~rc~G~AL~vA~~lL~~~~~~~~~~~~~~~~~ggrIi~F~sGppT~G 432 (874)
.+.++.||..|..... ...+|++++.|-.+.|
T Consensus 440 gTdi~~~l~~a~~~~~---------------~~~~vIliTD~~~~~g 471 (535)
T 2nvo_A 440 GTDCAQPILWAAQERL---------------DVDTFVVYTDNETWAG 471 (535)
T ss_dssp CCCTTHHHHHHHHTTC---------------CCSEEEEEESSCCCCC
T ss_pred CccHHHHHHHHHHhcC---------------CCCEEEEEeCCCccCC
Confidence 4667788877755432 3578999999977664
No 55
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=74.07 E-value=5.8 Score=41.05 Aligned_cols=63 Identities=22% Similarity=0.340 Sum_probs=47.0
Q ss_pred CcEEEEEecCCCCCCCCcccCCCCCCCchhhhHhHHHHHHHHHHHHhhcCeEEEEeeecC-C---CCCcccchhhhcccc
Q 002851 418 NSRIIVCAGGPNTYGPGSVPHSFSHPNYLHMEKMALKWMELLGRKAHQHNAVIDILCAGN-C---PVRVPVLQPLAKASG 493 (874)
Q Consensus 418 ggrIi~F~sGppT~GpG~l~~~~~~~~~~~~ek~a~~fY~~La~~~~~~gisVDiF~~s~-d---~vglaem~~l~~~TG 493 (874)
.-.||+++.|-.|.|.. + ...|+.+.+.||.|..+.++. + .-|..+|+.+++.||
T Consensus 10 ~k~iillTDG~~~~g~~-----------p----------~~aa~~a~~~gi~v~tIGig~~~~~~~~~~~~L~~IA~~tG 68 (242)
T 3rag_A 10 IRQILVITDGCSNIGPD-----------P----------VEAARRAHRHGIVVNVIGIVGRGDAGEQGYQEAHSIADAGG 68 (242)
T ss_dssp EEEEEEEESSCCCSSSC-----------H----------HHHHHHHHHTTCEEEEEEECCSSSCTTCCCHHHHHHHHHTT
T ss_pred ccEEEEEccCCCCCCCC-----------H----------HHHHHHHHHCCCEEEEEEecCCccccchhHHHHHHHHHhcC
Confidence 45678888898777631 0 245677888999999998843 3 446788999999999
Q ss_pred cEEEEcCC
Q 002851 494 GVLVLHDD 501 (874)
Q Consensus 494 G~v~~~~~ 501 (874)
|..+....
T Consensus 69 G~yf~a~~ 76 (242)
T 3rag_A 69 GMCRIVQP 76 (242)
T ss_dssp SCEEEECG
T ss_pred CeEEEeeH
Confidence 99888744
No 56
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=71.05 E-value=1.1 Score=37.63 Aligned_cols=20 Identities=35% Similarity=0.880 Sum_probs=17.6
Q ss_pred CceEEEccCCCccCCCcccc
Q 002851 215 SGQWQCVICRNLNGSEGEYV 234 (874)
Q Consensus 215 ~~~W~C~fC~~~N~~p~~Y~ 234 (874)
.-.|+|++|...|.++.+|.
T Consensus 15 ~~tWVCpICsfsN~v~s~fd 34 (76)
T 2j9u_B 15 VSTWVCPICMVSNETQGEFT 34 (76)
T ss_dssp CEEEECTTTCCEEEESSCCC
T ss_pred ccceECccccccCcCccccC
Confidence 46899999999999998874
No 57
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=68.07 E-value=1.6 Score=36.49 Aligned_cols=32 Identities=25% Similarity=0.443 Sum_probs=25.1
Q ss_pred CCCccCCCCCcccccceEEEcCCceEEEccCCCccCCC
Q 002851 193 RDPHRCHNCGAFANIYCKILLGSGQWQCVICRNLNGSE 230 (874)
Q Consensus 193 ~~p~RC~~C~AylNP~~~~~~~~~~W~C~fC~~~N~~p 230 (874)
|-++||. |+++ .-.+.+.+.-.|+ ||..-.+-
T Consensus 2 Y~vv~C~-C~~~----~~~~~~~kT~~C~-CG~~~~~~ 33 (71)
T 1gh9_A 2 YIIFRCD-CGRA----LYSREGAKTRKCV-CGRTVNVK 33 (71)
T ss_dssp EEEEEET-TSCC----EEEETTCSEEEET-TTEEEECC
T ss_pred eEEEECC-CCCE----EEEcCCCcEEECC-CCCeeeec
Confidence 4578999 9997 4566677888999 99887654
No 58
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=63.84 E-value=2 Score=38.41 Aligned_cols=37 Identities=19% Similarity=0.312 Sum_probs=28.4
Q ss_pred CCCccCCCCCcccccceEEEcCCceEEEccCCCccCCCcccc
Q 002851 193 RDPHRCHNCGAFANIYCKILLGSGQWQCVICRNLNGSEGEYV 234 (874)
Q Consensus 193 ~~p~RC~~C~AylNP~~~~~~~~~~W~C~fC~~~N~~p~~Y~ 234 (874)
-.|.+|.+|+--+ .+.-++.-+|+.|+..|-.++.|.
T Consensus 65 v~p~~C~~CG~~F-----~~~~~kPsrCP~CkSe~Ie~P~F~ 101 (105)
T 2gmg_A 65 IKPAQCRKCGFVF-----KAEINIPSRCPKCKSEWIEEPRFK 101 (105)
T ss_dssp ECCCBBTTTCCBC-----CCCSSCCSSCSSSCCCCBCCCCEE
T ss_pred EECcChhhCcCee-----cccCCCCCCCcCCCCCccCCccee
Confidence 3689999999764 233456789999999998877663
No 59
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=58.61 E-value=9.5 Score=38.67 Aligned_cols=42 Identities=17% Similarity=0.191 Sum_probs=30.1
Q ss_pred EEEEEECCCC-hhHHHHHHHHHH---HhhhcCCCCcEEEEEEECce
Q 002851 276 IILVIDECLD-EPHLQHLQSSLH---AFVESIPPTARIGIILYGRT 317 (874)
Q Consensus 276 ~vFvID~s~~-~~~l~~l~~sL~---~~L~~Lp~~a~VGlITFd~~ 317 (874)
++||+|+|.+ ...++.+|+.+. +.|+.+..+.|+||.+|-..
T Consensus 6 l~fl~D~S~SM~~di~~lk~~~~~l~~~l~~~~~~~r~Gfg~f~Dk 51 (212)
T 2iue_A 6 LYFLMGLSGSAQGHLSNVQTLGSDLLKALNEISRSGRIGFGSIVNM 51 (212)
T ss_dssp EEEEEECCGGGTTTHHHHHHHHHHHHHHHHHHCSCEEEEEEEESSS
T ss_pred EEEEEeCCCcchhHHHHHHHHHHHHHHHHHhhCcCceEEEEEEEcC
Confidence 5999999986 345666665554 44555667999999999544
No 60
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=57.91 E-value=6.1 Score=33.99 Aligned_cols=31 Identities=35% Similarity=0.717 Sum_probs=23.6
Q ss_pred CCccCCCCCcccccceEEEcCCceEEEccCCCccC
Q 002851 194 DPHRCHNCGAFANIYCKILLGSGQWQCVICRNLNG 228 (874)
Q Consensus 194 ~p~RC~~C~AylNP~~~~~~~~~~W~C~fC~~~N~ 228 (874)
.--.|..|++- ..++...+.|.|..|++...
T Consensus 26 ~~y~Cp~CG~~----~v~r~atGiW~C~~Cg~~~a 56 (83)
T 1vq8_Z 26 EDHACPNCGED----RVDRQGTGIWQCSYCDYKFT 56 (83)
T ss_dssp SCEECSSSCCE----EEEEEETTEEEETTTCCEEE
T ss_pred ccCcCCCCCCc----ceeccCCCeEECCCCCCEec
Confidence 45679999983 34556678999999998643
No 61
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=56.02 E-value=2.5 Score=33.62 Aligned_cols=28 Identities=25% Similarity=0.712 Sum_probs=19.6
Q ss_pred CccCCCCCcccccceEEEcCCceEEEccCCCc
Q 002851 195 PHRCHNCGAFANIYCKILLGSGQWQCVICRNL 226 (874)
Q Consensus 195 p~RC~~C~AylNP~~~~~~~~~~W~C~fC~~~ 226 (874)
.--|.+|+.++.- ....-+|+|++|.+.
T Consensus 33 ~r~CaRCGg~v~l----r~~k~~WvC~lC~k~ 60 (62)
T 2a20_A 33 TKFCARCGGRVSL----RSNKVMWVCNLCRKQ 60 (62)
T ss_dssp CEECTTSEEEEES----STTCEEEEEHHHHHH
T ss_pred CeeecccCCEeee----cCCeEEEEehhhhhc
Confidence 4557889887654 334568999999754
No 62
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=50.31 E-value=19 Score=27.46 Aligned_cols=29 Identities=17% Similarity=0.353 Sum_probs=23.3
Q ss_pred CccCCCCCcccccceEEEcCCceEEEccCCCc
Q 002851 195 PHRCHNCGAFANIYCKILLGSGQWQCVICRNL 226 (874)
Q Consensus 195 p~RC~~C~AylNP~~~~~~~~~~W~C~fC~~~ 226 (874)
...|..|++ .-..+|...+.++|..||..
T Consensus 5 ~~~CP~C~~---~~l~~d~~~gelvC~~CG~v 33 (50)
T 1pft_A 5 QKVCPACES---AELIYDPERGEIVCAKCGYV 33 (50)
T ss_dssp CCSCTTTSC---CCEEEETTTTEEEESSSCCB
T ss_pred cEeCcCCCC---cceEEcCCCCeEECcccCCc
Confidence 467999998 23567878889999999974
No 63
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=38.90 E-value=12 Score=30.66 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=28.7
Q ss_pred CCCccCCCCCcccccceEEEcCCceEEEccCCCc
Q 002851 193 RDPHRCHNCGAFANIYCKILLGSGQWQCVICRNL 226 (874)
Q Consensus 193 ~~p~RC~~C~AylNP~~~~~~~~~~W~C~fC~~~ 226 (874)
..+..|.+|++--.|..+-+..|. ..||-|+..
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl~ 39 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLF 39 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTE-EECHHHHHH
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCC-CccHHHHHH
Confidence 457899999999999999998776 999999854
No 64
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=37.57 E-value=14 Score=33.87 Aligned_cols=35 Identities=14% Similarity=0.281 Sum_probs=25.8
Q ss_pred ccCCCCCcccccc----eEEEcCC---ceEEEccCCCccCCC
Q 002851 196 HRCHNCGAFANIY----CKILLGS---GQWQCVICRNLNGSE 230 (874)
Q Consensus 196 ~RC~~C~AylNP~----~~~~~~~---~~W~C~fC~~~N~~p 230 (874)
--|++|++++=|- +++..++ -.++|..||+...+|
T Consensus 66 ~~Ck~C~s~LiPG~t~~vri~~~~~~~vv~tCl~Cg~~kR~p 107 (120)
T 1x0t_A 66 RYCKRCHTFLIPGVNARVRLRTKRMPHVVITCLECGYIMRYP 107 (120)
T ss_dssp SBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTCCEEEEE
T ss_pred HhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEEEc
Confidence 3699999998776 3344332 367899999988776
No 65
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.48 E-value=13 Score=31.27 Aligned_cols=31 Identities=26% Similarity=0.853 Sum_probs=23.3
Q ss_pred ccCCCCCcccccceEEEcCCceEEEccCCCc
Q 002851 196 HRCHNCGAFANIYCKILLGSGQWQCVICRNL 226 (874)
Q Consensus 196 ~RC~~C~AylNP~~~~~~~~~~W~C~fC~~~ 226 (874)
..|..|+-=+.--|++...+..|+|.+|...
T Consensus 43 ~~C~~Ck~rVC~~Crv~~~~~~W~C~VC~k~ 73 (76)
T 2csz_A 43 NTCRGCNHLVCRDCRIQESNGTWRCKVCSGP 73 (76)
T ss_dssp SEETTTTEECCTTSEEECSTTCEEEHHHHSS
T ss_pred CcCcccChhhcccccccCCCCCEEEeeCchh
Confidence 4477777777777777766689999999754
No 66
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1
Probab=34.36 E-value=8.7 Score=38.22 Aligned_cols=28 Identities=25% Similarity=0.726 Sum_probs=19.5
Q ss_pred CCccCCCCCc-ccccceEEEcCCceEEEccCC
Q 002851 194 DPHRCHNCGA-FANIYCKILLGSGQWQCVICR 224 (874)
Q Consensus 194 ~p~RC~~C~A-ylNP~~~~~~~~~~W~C~fC~ 224 (874)
...+|++|++ |+...- +....++|+||+
T Consensus 133 ~l~~C~~Cgg~fv~~~~---~~~~~f~Cp~C~ 161 (192)
T 2avu_E 133 QLSSCNCCGGNFITHAH---QPVGSFACSLCQ 161 (192)
T ss_dssp EEEECTTTCCEEEEESS---CCSSCCCCTTC-
T ss_pred eeCcCCCCCCCeeCccC---CCCCCCcCCCCC
Confidence 4678999997 443333 245799999999
No 67
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=32.90 E-value=11 Score=37.78 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=18.0
Q ss_pred CccCCCCCcccccceEEEcCCceEEEccCCCc
Q 002851 195 PHRCHNCGAFANIYCKILLGSGQWQCVICRNL 226 (874)
Q Consensus 195 p~RC~~C~AylNP~~~~~~~~~~W~C~fC~~~ 226 (874)
.-+|..|+-+... ..-|+||+|+..
T Consensus 171 ~~~C~~CG~i~~g-------~~p~~CP~C~~~ 195 (202)
T 1yuz_A 171 FHLCPICGYIHKG-------EDFEKCPICFRP 195 (202)
T ss_dssp EEECSSSCCEEES-------SCCSBCTTTCCB
T ss_pred EEEECCCCCEEcC-------cCCCCCCCCCCC
Confidence 4689999965432 345999999975
No 68
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=32.63 E-value=7.2 Score=29.64 Aligned_cols=9 Identities=33% Similarity=1.250 Sum_probs=5.3
Q ss_pred eEEEccCCC
Q 002851 217 QWQCVICRN 225 (874)
Q Consensus 217 ~W~C~fC~~ 225 (874)
.|+|+.|+.
T Consensus 30 dw~CP~Cg~ 38 (46)
T 6rxn_A 30 DWCCPVCGV 38 (46)
T ss_dssp TCBCTTTCC
T ss_pred CCcCcCCCC
Confidence 466666664
No 69
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=32.27 E-value=13 Score=27.80 Aligned_cols=31 Identities=19% Similarity=0.312 Sum_probs=25.7
Q ss_pred CccCCCCCcccccceEEEcCCceEEEccCCCc
Q 002851 195 PHRCHNCGAFANIYCKILLGSGQWQCVICRNL 226 (874)
Q Consensus 195 p~RC~~C~AylNP~~~~~~~~~~W~C~fC~~~ 226 (874)
|..|.+|++--.|..+-...|. -.||-|+..
T Consensus 1 p~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~ 31 (43)
T 2vut_I 1 PTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLF 31 (43)
T ss_dssp -CCCSSSCCCCCSCCEECTTSC-EECHHHHHH
T ss_pred CCcCCccCCCCCCccccCCCCC-cccHHHHHH
Confidence 4679999999999999887766 889999854
No 70
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=31.93 E-value=36 Score=40.53 Aligned_cols=41 Identities=17% Similarity=0.291 Sum_probs=31.6
Q ss_pred EEEEEECCCC-hhHHHHHH---HHHHHhhhcCCCCcEEEEEEECc
Q 002851 276 IILVIDECLD-EPHLQHLQ---SSLHAFVESIPPTARIGIILYGR 316 (874)
Q Consensus 276 ~vFvID~s~~-~~~l~~l~---~sL~~~L~~Lp~~a~VGlITFd~ 316 (874)
++||+|+|.+ ..+++.|| ..|...|..+-.+.|+||.+|-.
T Consensus 107 ly~LmD~S~SM~ddi~~lk~l~~~l~~~l~~~t~~~r~GfgsFvD 151 (687)
T 3k6s_B 107 LYYLMDLSYSMLDDLRNVKKLGGDLLRALNEITESGRIGFGSFVD 151 (687)
T ss_dssp EEEEEECSSTTHHHHHTTTTCCTTHHHHHHSSCCSCEEEEEEECC
T ss_pred EEEEEcCCcchHHHHHHHHHHHHHHHHHHHhhCcCcEEeeEEeec
Confidence 5899999987 45666655 45666677788899999999954
No 71
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=31.32 E-value=6.9 Score=33.89 Aligned_cols=32 Identities=19% Similarity=0.383 Sum_probs=16.4
Q ss_pred CCccCCCCCcccccc-----------eEEEcCCceEEEccCCC
Q 002851 194 DPHRCHNCGAFANIY-----------CKILLGSGQWQCVICRN 225 (874)
Q Consensus 194 ~p~RC~~C~AylNP~-----------~~~~~~~~~W~C~fC~~ 225 (874)
..-+|..|+=+..+- ..|+.--.-|+|+.|+.
T Consensus 34 ~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga 76 (87)
T 1s24_A 34 LKWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGA 76 (87)
T ss_dssp CEEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCC
T ss_pred ceEECCCCCeEecCCcCCcccCcCCCCChhHCCCCCCCCCCCC
Confidence 345677776444432 12222234577777775
No 72
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=27.56 E-value=22 Score=32.77 Aligned_cols=35 Identities=17% Similarity=0.325 Sum_probs=25.7
Q ss_pred ccCCCCCcccccc----eEEEcCC---ceEEEccCCCccCCC
Q 002851 196 HRCHNCGAFANIY----CKILLGS---GQWQCVICRNLNGSE 230 (874)
Q Consensus 196 ~RC~~C~AylNP~----~~~~~~~---~~W~C~fC~~~N~~p 230 (874)
--|++|++++=|- +++..++ -.++|..||+..-+|
T Consensus 61 ~~Ck~C~s~LIPG~t~~vri~~~~k~~vv~tCl~Cg~~kR~p 102 (123)
T 2k3r_A 61 RYCKKCHAFLVPGINARVRLRQKRMPHIVVKCLECGHIMRYP 102 (123)
T ss_dssp SBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTTEEEEEE
T ss_pred HhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEEEe
Confidence 3699999998776 3444332 367899999988776
No 73
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.28 E-value=17 Score=28.19 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=21.9
Q ss_pred CCCccCCCCCcccccceEEEcCCceEEEccCCCccC
Q 002851 193 RDPHRCHNCGAFANIYCKILLGSGQWQCVICRNLNG 228 (874)
Q Consensus 193 ~~p~RC~~C~AylNP~~~~~~~~~~W~C~fC~~~N~ 228 (874)
...-.|.+|++- .+.+.|.|-=||..|-
T Consensus 12 ~~k~iCpkC~a~--------~~~gaw~CrKCG~~~l 39 (51)
T 3j21_g 12 FKKYVCLRCGAT--------NPWGAKKCRKCGYKRL 39 (51)
T ss_dssp SSEEECTTTCCE--------ECTTCSSCSSSSSCCC
T ss_pred hCCccCCCCCCc--------CCCCceecCCCCCccc
Confidence 456779999996 3468999999998853
No 74
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=26.08 E-value=11 Score=29.43 Aligned_cols=10 Identities=30% Similarity=1.212 Sum_probs=4.8
Q ss_pred ceEEEccCCC
Q 002851 216 GQWQCVICRN 225 (874)
Q Consensus 216 ~~W~C~fC~~ 225 (874)
..|+|+.|+.
T Consensus 34 ~dw~CP~Cg~ 43 (52)
T 1yk4_A 34 DDWVCPLCGA 43 (52)
T ss_dssp TTCBCTTTCC
T ss_pred CCCcCCCCCC
Confidence 3455555553
No 75
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=24.74 E-value=16 Score=35.12 Aligned_cols=33 Identities=21% Similarity=0.520 Sum_probs=22.9
Q ss_pred ccCCCCCcccccceEEE-cCCceEEEccCCCccC
Q 002851 196 HRCHNCGAFANIYCKIL-LGSGQWQCVICRNLNG 228 (874)
Q Consensus 196 ~RC~~C~AylNP~~~~~-~~~~~W~C~fC~~~N~ 228 (874)
..|..|+-.+.--|.+. .....|.|.+|...-.
T Consensus 86 ~~C~~C~~~VC~~C~~~~~~~~~W~C~vC~k~re 119 (153)
T 2zet_C 86 RQCLECSLFVCKSCSHAHPEEQGWLCDPCHLARV 119 (153)
T ss_dssp EECTTTCCEECGGGEECCSSSSSCEEHHHHHHHH
T ss_pred CcCCCCCchhhcccccccCCCCcEeeHHHHHHHH
Confidence 55666776666666643 3457999999987644
No 76
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=23.66 E-value=27 Score=32.68 Aligned_cols=33 Identities=21% Similarity=0.542 Sum_probs=23.7
Q ss_pred ccCCCCCcccccceEEEcC----CceEEEccCCCccC
Q 002851 196 HRCHNCGAFANIYCKILLG----SGQWQCVICRNLNG 228 (874)
Q Consensus 196 ~RC~~C~AylNP~~~~~~~----~~~W~C~fC~~~N~ 228 (874)
..|..|+-.+.--|.+... ...|.|.+|...-.
T Consensus 73 ~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~re 109 (134)
T 1zbd_B 73 VVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQRE 109 (134)
T ss_dssp EECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHHHH
T ss_pred CCCCCCCcccccccCCccCCCCCccceechhhHHHHH
Confidence 5677777777777777542 35899999997644
No 77
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=23.29 E-value=15 Score=28.66 Aligned_cols=10 Identities=20% Similarity=0.720 Sum_probs=4.8
Q ss_pred eEEEccCCCc
Q 002851 217 QWQCVICRNL 226 (874)
Q Consensus 217 ~W~C~fC~~~ 226 (874)
+|+|..|+..
T Consensus 3 ~y~C~~CGyv 12 (52)
T 1e8j_A 3 IYVCTVCGYE 12 (52)
T ss_dssp CEECSSSCCC
T ss_pred cEEeCCCCeE
Confidence 3555555543
No 78
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=21.50 E-value=16 Score=28.79 Aligned_cols=9 Identities=33% Similarity=1.272 Sum_probs=4.6
Q ss_pred eEEEccCCC
Q 002851 217 QWQCVICRN 225 (874)
Q Consensus 217 ~W~C~fC~~ 225 (874)
.|+|+.|+.
T Consensus 36 dw~CP~Cg~ 44 (54)
T 4rxn_A 36 DWVCPLCGV 44 (54)
T ss_dssp TCBCTTTCC
T ss_pred CCcCcCCCC
Confidence 455555553
No 79
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=21.32 E-value=16 Score=30.28 Aligned_cols=10 Identities=30% Similarity=0.962 Sum_probs=5.3
Q ss_pred ceEEEccCCC
Q 002851 216 GQWQCVICRN 225 (874)
Q Consensus 216 ~~W~C~fC~~ 225 (874)
..|+|+.|+.
T Consensus 39 ddw~CP~Cga 48 (70)
T 1dx8_A 39 DSFMCPACRS 48 (70)
T ss_dssp TTCBCTTTCC
T ss_pred CCCcCCCCCC
Confidence 3455555554
No 80
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=21.26 E-value=27 Score=24.22 Aligned_cols=13 Identities=31% Similarity=0.560 Sum_probs=11.4
Q ss_pred ceEEEccCCCccC
Q 002851 216 GQWQCVICRNLNG 228 (874)
Q Consensus 216 ~~W~C~fC~~~N~ 228 (874)
+-|.|+-|+..|.
T Consensus 4 gDW~C~~C~~~Nf 16 (32)
T 2lk0_A 4 EDWLCNKCCLNNF 16 (32)
T ss_dssp SEEECTTTCCEEE
T ss_pred CCCCcCcCcCCcC
Confidence 5699999999885
No 81
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=20.82 E-value=16 Score=27.79 Aligned_cols=32 Identities=25% Similarity=0.474 Sum_probs=26.4
Q ss_pred CCccCCCCCcccccceEEEcCCceEEEccCCCc
Q 002851 194 DPHRCHNCGAFANIYCKILLGSGQWQCVICRNL 226 (874)
Q Consensus 194 ~p~RC~~C~AylNP~~~~~~~~~~W~C~fC~~~ 226 (874)
+...|.+|++--.|..+-...|. ..||-|+..
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~ 34 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGH-YLCNACGLY 34 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCC-CBCSHHHHH
T ss_pred CCCCCCCcCCCCCCcCccCCCCC-ccchHHHHH
Confidence 45679999999999988887765 889999854
No 82
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=20.81 E-value=21 Score=41.41 Aligned_cols=21 Identities=33% Similarity=0.786 Sum_probs=0.0
Q ss_pred CCceEEEccCCCccCCCcccc
Q 002851 214 GSGQWQCVICRNLNGSEGEYV 234 (874)
Q Consensus 214 ~~~~W~C~fC~~~N~~p~~Y~ 234 (874)
....|+|++|...|.+|..+.
T Consensus 114 ~~~tWvC~ICsfsN~~~~~f~ 134 (566)
T 1w7p_D 114 VVSTWVCPICMVSNETQGEFT 134 (566)
T ss_dssp ---------------------
T ss_pred cccceeccccccCCCCCCCCC
Confidence 357899999999999987764
No 83
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=20.68 E-value=14 Score=29.06 Aligned_cols=10 Identities=50% Similarity=1.551 Sum_probs=4.8
Q ss_pred eEEEccCCCc
Q 002851 217 QWQCVICRNL 226 (874)
Q Consensus 217 ~W~C~fC~~~ 226 (874)
+|+|..|+..
T Consensus 3 ~y~C~~CGyv 12 (55)
T 2v3b_B 3 KWQCVVCGFI 12 (55)
T ss_dssp EEEETTTCCE
T ss_pred cEEeCCCCeE
Confidence 4555555543
No 84
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=20.22 E-value=27 Score=31.78 Aligned_cols=28 Identities=18% Similarity=0.464 Sum_probs=19.6
Q ss_pred CccCCCCCcccccceEEEcCCceE-EEccCCCccC
Q 002851 195 PHRCHNCGAFANIYCKILLGSGQW-QCVICRNLNG 228 (874)
Q Consensus 195 p~RC~~C~AylNP~~~~~~~~~~W-~C~fC~~~N~ 228 (874)
-.+|.+|+..... ..... .||-|+..+.
T Consensus 73 ~~~C~~CG~~~e~------~~~~~~~CP~Cgs~~~ 101 (119)
T 2kdx_A 73 ELECKDCSHVFKP------NALDYGVCEKCHSKNV 101 (119)
T ss_dssp EEECSSSSCEECS------CCSTTCCCSSSSSCCC
T ss_pred eEEcCCCCCEEeC------CCCCCCcCccccCCCc
Confidence 4789999876544 23456 7999987753
No 85
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=20.06 E-value=35 Score=23.22 Aligned_cols=16 Identities=31% Similarity=0.769 Sum_probs=13.1
Q ss_pred CceEEEccCCCccCCC
Q 002851 215 SGQWQCVICRNLNGSE 230 (874)
Q Consensus 215 ~~~W~C~fC~~~N~~p 230 (874)
+..|.|+.|...|.-.
T Consensus 4 ~~~W~C~~CTf~N~~~ 19 (31)
T 1nj3_A 4 SAMWACQHCTFMNQPG 19 (31)
T ss_dssp SCCEECSSSCCEECSS
T ss_pred CccccCCcccccCCCC
Confidence 4689999999999743
Done!