Citrus Sinensis ID: 002852

Local Sequence Feature Prediction

Prediction and Method	Result

Residue Number Marker

Protein Sequence

Secondary Structure (Consensus)

Disordered Region (Consensus)

Transmembrane Helix (Consensus)

Signal Peptide (Consensus)

Coiled Coil (COILS)

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870----

MMDTVGDDNWGNEWEKRDIGFIDFEDYKSECSYNPSEEDPVQISFPFPFIDGKPQSVSVGETAVDSITIKNTTREPVELWSKIYASTPENTFTLSVMKPPSPGSDSGTNRGFVEFFTLEERMIQPGQTLTIWLSCKPKGIGLHTTVLQFDVEDRIERVVFLLAEDKISQSLASKRPYSRGGRKKQFSVDKYVVGSRPARYRGQIYQNRLPRYDIPNHIRELIERKQIPDAITDGLTLKNYTSFFKTLLIMEEIQLKEDMRAYDMENVTLMRKGLYLSLVVPGLAERRPSLVNGDFIFAKHAYEDTSSAYQGFIHRVEADEVHLKFASDFQLNHRDENLYNVQFTYNRVNMRRLYQATDAAQELDTEFLFPSESSGIRLIESNTLVPISCNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILGEKAVEVRENEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYAEGVDRGHFSHIFLDEAGQASEPESMVPISSYCKKDTVVVLAGDPMQLGPVIYSREAETYGMGKSYLERLFECEPYCHGNENYVTKLVRNYRSHPQILHLPSKLFYEEELIACKDESISCTAYLNFLPNKEFPVLFFGIQGCDEREGSNPSWFNRIEVSKVVEIIQKLTSTGNLSEEDIGVITPYRQQVLKLNKALESLYMPDIKVGSVEQFQGQERQVIIVSTVRSTIKHNDFDRKHCLGFLSNPRRFNVAVTRAISLLIIIGNPHIVSKDPYWHQLLWYCSDNNSYQGCALPEREEFADEDPTAAECWNHEEEIPQSFQEDNWNQEPFQAENLKPVKDEDEWSDGWHL

ccccccccccccccccccEEEEccccccccccccccccccEEEccccccccccccEEEEccCEEEEEEEECccccEEEEEEEEEccccccCEEEEECcccccccccccccccccccccccCCcccccEEEEEEEEECcccCEEEEEEEEEEcccEEEEEEEEEEccHHHHccccccccccccccccccccEECcccccccccHHHHcccccccccHHHHHHHHccccccHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEccEEEEEEccccccccccccccEEEEEEccccccccEEEEEEEEEccEEEEEEccccccccccccCEEEEEEEccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccEEEEccccccHHHHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHccccccccccEEEccccccccccccHHHHHHccccHHHcccccHHHHccccEEEEEcccccHHHccccccccccEEEEEccccccccccccccccccccccEEEEcccccccccccccHHHHHccccccHHHHHHcccccccccccccccccccccccHHHHccccHHcccccccccccccccccccccccccccccEEEEEccccEEEcccccccccHHHHHHHHHHHHHHHHccccccccCEEEccHHHHHHHHHHHHHHccccccEEEEEccccccCEEEEEEEEEEccccccccccccccccccccccHHHHHHHccccEEEECccccccccHHHHHHHHHHHHcccCCccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccc

********NWGNEWEKRDIGFIDFEDYKSECSYNPSEEDPVQISFPFPFIDGKPQSVSVGETAVDSITIKNTTREPVELWSKIYASTPENTF******************GFVEFFTLEERMIQPGQTLTIWLSCKPKGIGLHTTVLQFDVEDRIERVVFLLAEDKI******************FSVDKYVVGSRPARYRGQIYQNRLPRYDIPNHIRELIERKQIPDAITDGLTLKNYTSFFKTLLIMEEIQLKEDMRAYDMENVTLMRKGLYLSLVVPGLAERRPSLVNGDFIFAKHAYEDTSSAYQGFIHRVEADEVHLKFASDFQLNHRDENLYNVQFTYNRVNMRRLYQATDAAQELDTEFLFPSESSGIRLIESNTLVPISCNLNEEQMCSIEKILGLKGAPPYLIYGPPGTGKTMTLVEAILQLYATREDARLLVCAPSNSAADHLLEKILGEKAVEVRENEIFRLNAPSRPYEDVNADHIRFCFFDEQIFKCPPLAALVCYRIIISTYMSASLIYAEGVDRGHFSHIFLDEAGQASEPESMVPISSYCKKDTVVVLAGDPMQLGPVIYSREAETYGMGKSYLERLFECEPYCHGNENYVTKLVRNYRSHPQILHLPSKLFYEEELIACKDESISCTAYLNFLPNKEFPVLFFGIQGCDEREGSNPSWFNRIEVSKVVEIIQKLTSTGNLSEEDIGVITPYRQQVLKLNKALESLYMPDIKVGSVEQFQGQERQVIIVSTVRSTIKHNDFDRKHCLGFLSNPRRFNVAVTRAISLLIIIGNPHIVSKDPYWHQLLWYCSDNNSYQGCALPER******************************************************

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Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries

Annotation	Function Description	Confidence Level	Reference Protein
Probable RNA helicase SDE3	Probable RNA helicase required for post-transcriptional gene silencing (PTGS), a process that provides protection in plants against virus infection and can suppress expression of transgenes Plays a central role in RNA interference (RNAi) process, a process that mediates mRNA destruction of translational repression. Required for the assembly of the RISC complex, a complex required for target RNA destruction or repression. May be required in the RISC assembly to unwind miRNAs, in the production of single-stranded miRNA from the double-stranded miRNA, a key step in RISC formation.	probable	Q8GYD9

Prediction of Enzyme Commission Number

No confident prediction of EC number!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 2XZL, chain A
Confidence level:very confident
Coverage over the Query: 148-817
View the alignment between query and template
View the model in PyMOL

Template: 1W36, chain D
Confidence level:confident
Coverage over the Query: 392-491,510-513,526-628
View the alignment between query and template
View the model in PyMOL

Template: 3ISY, chain A
Confidence level:probable
Coverage over the Query: 59-150
View the alignment between query and template
View the model in PyMOL