Query 002853
Match_columns 873
No_of_seqs 285 out of 1242
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 12:07:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002853.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002853hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0443 Actin regulatory prote 100.0 1E-202 2E-207 1708.4 67.3 781 1-869 1-795 (827)
2 KOG0444 Cytoskeletal regulator 100.0 5E-106 1E-110 889.2 21.0 686 14-722 496-1254(1255)
3 KOG0445 Actin regulatory prote 100.0 2E-75 4.2E-80 647.7 22.0 529 138-721 223-839 (919)
4 KOG0443 Actin regulatory prote 100.0 1.1E-67 2.4E-72 602.8 33.8 320 12-350 395-720 (827)
5 KOG0444 Cytoskeletal regulator 100.0 6.9E-43 1.5E-47 387.9 18.5 317 389-719 501-836 (1255)
6 KOG0445 Actin regulatory prote 100.0 3.1E-41 6.7E-46 375.7 15.2 290 19-350 523-837 (919)
7 smart00262 GEL Gelsolin homolo 99.7 1.5E-16 3.3E-21 143.5 10.2 88 141-233 2-89 (90)
8 smart00262 GEL Gelsolin homolo 99.7 7E-16 1.5E-20 139.1 11.2 75 271-346 16-90 (90)
9 PF00626 Gelsolin: Gelsolin re 99.4 5.6E-13 1.2E-17 116.0 6.2 72 268-340 5-76 (76)
10 PF00626 Gelsolin: Gelsolin re 99.3 1.3E-12 2.8E-17 113.7 6.0 74 150-228 3-76 (76)
11 PTZ00395 Sec24-related protein 94.8 0.089 1.9E-06 66.6 9.0 34 271-304 1434-1467(1560)
12 PTZ00395 Sec24-related protein 94.3 0.095 2.1E-06 66.3 7.5 115 617-735 1403-1550(1560)
13 KOG1984 Vesicle coat complex C 94.2 0.23 4.9E-06 60.3 10.1 87 617-708 857-973 (1007)
14 COG5028 Vesicle coat complex C 94.2 0.13 2.9E-06 61.5 8.2 116 618-736 709-857 (861)
15 COG5028 Vesicle coat complex C 92.8 0.16 3.5E-06 60.9 5.9 73 265-337 730-828 (861)
16 KOG1984 Vesicle coat complex C 91.6 0.47 1E-05 57.8 7.7 67 271-338 881-973 (1007)
17 KOG1985 Vesicle coat complex C 89.6 0.24 5.1E-06 59.9 3.0 31 271-301 763-793 (887)
18 PLN00162 transport protein sec 80.0 6.3 0.00014 49.4 9.2 81 253-336 620-714 (761)
19 KOG1985 Vesicle coat complex C 77.5 4.1 9E-05 49.8 6.1 51 618-668 735-794 (887)
20 PLN00162 transport protein sec 64.4 19 0.0004 45.3 8.1 44 618-665 620-663 (761)
21 KOG3655 Drebrins and related a 57.4 20 0.00044 41.5 6.0 108 8-115 13-134 (484)
22 PF00241 Cofilin_ADF: Cofilin/ 46.9 90 0.0019 29.5 7.9 54 410-463 47-104 (127)
23 KOG3655 Drebrins and related a 40.0 58 0.0012 37.9 6.1 60 426-485 74-135 (484)
24 PF00241 Cofilin_ADF: Cofilin/ 36.6 99 0.0022 29.2 6.5 88 19-109 16-116 (127)
25 smart00102 ADF Actin depolymer 34.8 1.4E+02 0.003 28.4 7.2 88 18-108 15-115 (127)
26 smart00102 ADF Actin depolymer 29.6 1.5E+02 0.0033 28.1 6.5 54 410-463 47-104 (127)
27 cd00013 ADF Actin depolymerisa 28.6 2E+02 0.0043 27.3 7.1 86 19-108 22-121 (132)
28 PLN03216 actin depolymerizing 26.7 4.9E+02 0.011 25.4 9.6 91 16-109 26-130 (141)
29 COG5014 Predicted Fe-S oxidore 23.0 74 0.0016 32.4 2.9 79 516-606 92-170 (228)
30 cd00013 ADF Actin depolymerisa 20.6 4.5E+02 0.0099 24.8 7.9 53 411-463 54-110 (132)
No 1
>KOG0443 consensus Actin regulatory proteins (gelsolin/villin family) [Cytoskeleton]
Probab=100.00 E-value=1e-202 Score=1708.43 Aligned_cols=781 Identities=47% Similarity=0.821 Sum_probs=719.6
Q ss_pred CCCCcccCCcccccCCccccEEEEEEECCeEeecCCCCCCccccCCeEEEEeeeecCCCCCceEEEEEccCCcCchhhhH
Q 002853 1 MSLHSKDIDSAFEGAGKKLGLEIWCIENLQLVSVPKSSHGKFYTGSAYVILNTALLKSGPPQHDIHYWLGNDVNEEDSTL 80 (873)
Q Consensus 1 ~~~~~~~~d~~~~g~G~~~gl~iWrIe~~~~~~vp~~~~G~Fy~gdsYIVl~t~~~~~g~~~~~i~~W~G~~ss~de~g~ 80 (873)
|+++|.++|++|+|+|++|||+|||||+|+++|||++.||+||+|||||||+|+..+++.+.|+||||||+++|+||+|+
T Consensus 1 ~s~~~~~ld~af~~ag~~pGl~IWRIe~f~lv~VP~s~~G~Fy~GdaYIvL~t~~~k~~~l~~DIHyWLGkd~S~dE~g~ 80 (827)
T KOG0443|consen 1 MSMSMLDLDPAFQGAGQKPGLEIWRIENFELVPVPKSSHGKFYTGDAYIVLKTTLKKNGSLSYDIHYWLGKDSSQDEAGA 80 (827)
T ss_pred CCccccccCHHHHhcccCCceEEEEeccCeeeecchhccCceecCceEEEEehhhccCCccceeEEEEecCccchhhhcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCceEEEeeccCCcHHHHhhhCCcEEEecCCccCCCCCCCCCccceEEEEeeCcceEEEEEecCCCC
Q 002853 81 VSDKALELDAALGSCTVQYREVQGQETEKFLSYFRPCIIPLDGKYSLRSGKSNGETYKISMLTCKGDHVVRVKEVPFSRS 160 (873)
Q Consensus 81 AA~~aveLd~~lgg~~vq~Re~QG~Es~~Fl~~Fk~~ii~~~Gg~~sgf~~~~~~~~~~rL~~vkG~~~v~~~eV~~s~s 160 (873)
||++|||||+.|||++||||||||+||+.||+|||+||||.+||++|||+||+.+.+.+|||||||+|++|++|||++|+
T Consensus 81 aAiktveLD~~Lgg~~vQhREVQg~ES~~FLsYFK~gi~~~~GGv~Sg~khv~~~~~~~rL~~~KGkr~vr~~eV~~~~s 160 (827)
T KOG0443|consen 81 AAIKTVELDDYLGGRAVQHREVQGHESEKFLSYFKPGIIYQEGGVASGFKHVETEEYQVRLFHCKGKRNVRVKEVPFSWS 160 (827)
T ss_pred eeeeeEehhhhhCCCcceeehhcccchHHHHhhccCCceecccccccCcccccccceeeEEEEEccceeEEEEEEEeehh
Confidence 99999999999999999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred CccCCCceeeeCCCeEEEEeCCCCCHHHHHHHHHHHHHhhccCCCCceeEEEEcCCccCCCCChhhHHHHcCCCCC-CCC
Q 002853 161 SLNHNDVFIVDTASKIFLFSGCNSSIQERAKALEVVQYIKEDKHGGKCGVATVEDGKFVGDSDVGEFWSLFGGYAP-IPR 239 (873)
Q Consensus 161 SLns~DvFILd~~~~iyvW~G~~S~~~Er~kA~~va~~ik~~~~~g~~~v~~veeG~~~~~~E~~eFw~~lGg~~~-~~~ 239 (873)
|||++||||||++++||+|+|++||++||+||+++|+.|++.+|.|+|+|.+||+|+++.++|..+||..+||.++ ++.
T Consensus 161 S~N~gDvFILD~g~~i~qw~G~~Ss~~ER~KAl~~~~~IrD~e~~Gr~~V~vvdd~~~~~d~d~~~~~~~~~g~~~~~~~ 240 (827)
T KOG0443|consen 161 SLNHGDVFILDTGSKIYQWNGPNSSIQERAKALEVVQYIRDNERDGRCEVAVVDDGKEAADSDLGEFWGFVLGFAPALPK 240 (827)
T ss_pred hcCCCcEEEEEcCCceEEEcCCcccHHHHHHHHHHHHHhhccCCCCceeEEEecCcccccCchHHHHHHhhcCcCccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999889999999999999988 666
Q ss_pred CCCCCCCCCCCCCceeEEEEc-CCCCEEE--EecCCCccccCCCCceEEeeCC-CeEEEEecCCCCHHHHHHHHHHHHHH
Q 002853 240 DSPSAFQQQPDTPSTTFFWIN-LQGKLCQ--IAANSLNKDMLEKDKCYMLDCV-NEVFVWTGRNTSITERRISISASEDF 315 (873)
Q Consensus 240 ~~~~~~~~~~~~~~~rLy~v~-~~G~l~~--~e~~~~~q~~L~~~~vyILD~g-~eIyVWiG~~as~~erk~Al~~A~~y 315 (873)
+...+++.......++||||+ ++|.+.. +...||+|+||++++||||||| .+||||+|++|+.+||+.||..|++|
T Consensus 241 ~~~~~~~~~~~s~~~kLYkVsd~~g~l~v~~va~~~l~qdlLd~~dCYILD~g~~~IfVW~Gr~as~~ERkaAm~~AeeF 320 (827)
T KOG0443|consen 241 KSPDDDDEQANSAAAKLYKVSDASGGLKVPVVADGPLTKDLLDTEDCYILDCGGGEIFVWKGRQASLDERKAAMSSAEEF 320 (827)
T ss_pred CCcchhhhhhhccccEEEEEeccCCCccccccccchhhHHhhccCCeEEEecCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 666555556667789999995 4676543 3335699999999999999999 99999999999999999999999999
Q ss_pred HHhcCCCCCceEEEecCCccchhhhhhcccCCCCCCCcccccchhHHHhhhhhcCCCCCCC---Ccc--CCCCccccCCc
Q 002853 316 LRNQGRTTGTHLTFLTEGLETTVFRSYFDSWPQIAEPKLYDEGREKVAAIFKQQGHDVKEL---PEE--DFEPYVNCRGI 390 (873)
Q Consensus 316 ~~~~~R~p~t~i~~V~eG~Ep~~Fk~~F~~W~~~~~~~~~~~~~~kva~~~~~~~~dv~~l---p~~--e~~~~~d~~g~ 390 (873)
|++++||++|.|++|.||.|++.||++|.+|++.........++|++|++++.+++||..| |.. +.++++||+|+
T Consensus 321 lk~k~yP~~TqV~rv~EG~Esa~FKq~F~~W~~~~~t~~~~~~rG~va~l~q~~~~Dv~~L~~~~~~aa~~~mvddg~G~ 400 (827)
T KOG0443|consen 321 LKKKKYPPNTQVVRVLEGAESAPFKQLFDSWPDKDQTNGKEEGRGKVAALLQVKGFDVTGLHKSPKMAAQPQMVDDGSGK 400 (827)
T ss_pred HHhccCCCCceEEEecCCCcchhHHHHHhhCccccccccccccccccceeeeecccchhhcccCccccccccceecCCCc
Confidence 9999999999999999999999999999999998776667788999999999999999999 333 45789999999
Q ss_pred EEEEEEECCceeecCCcccceeeeccEEEEEeecC-CCCcceEEEEEEcCCCCCHHHHHHHHHHHHHHHHhccCCceEEE
Q 002853 391 LKVWRVNGDELSLLPAAEQMKLFSGDCYIVKYTYP-GNGRDENVIYAWFGHESMTEDRAAAISHMSAIVDSTRGEAVMAQ 469 (873)
Q Consensus 391 l~VWrV~~~~~~~lp~~~~G~FysgdcYIvl~ty~-~~~~~~~~iy~W~G~~ss~~e~~~aa~~a~~l~~~~~~~~vq~R 469 (873)
|+||||++..+++||..++|+||+||||||+|+|+ ++.+.+|+||.|+|++|+++|+.+|+.+|++|+++++|.|+|+|
T Consensus 401 ~~Vwrv~~~~~~~v~~~~~g~fy~GdcYlvlYtY~~~~~~~~~iiY~W~G~qAs~ee~~~a~~~A~~l~~s~kg~~vq~r 480 (827)
T KOG0443|consen 401 LQVWRVEGDEKQPVDIADYGKFYGGDCYLVLYTYPRGEERTEHIIYVWQGKQASQEERAAAISLAKALVESLKGVPVQVR 480 (827)
T ss_pred EEEEEEcCceeeecChHHhCcccCCCeEEEEEeeccCCcccceEEEEEecccCCHHHHHHHHHHHHHHhhhcCCceeEEE
Confidence 99999999999999999999999999999999998 55699999999999999999999999999999999999999999
Q ss_pred eeccCCcHHHHhhcCc-EEEEecCcccccceeeeecccccccccccceEEEEEEecCCCceEEEEeccCCCCcCCCCeEE
Q 002853 470 VHQDMEPVQFFLIFQS-LIVFKGGLSTQYKKFIVEEGIVDETYDEKKMALFCIQGTSPCNMQAFQVDRVSTCLNSSYCYI 548 (873)
Q Consensus 470 v~QGkEp~~Fl~lF~~-~iI~kGg~~~~~~~~~~~~~~~~~~~~~~~~~Lf~V~g~~~~~~~avqV~~~~ssLnS~d~fI 548 (873)
|+||+||+||++||++ |||++||++. .+++|+..+++||||+|+.++|++|+||++.++||||+||||
T Consensus 481 v~~GkEP~hF~~iFqgkliifkgg~s~-----------~g~~~~~~~t~LFqV~Gt~~~n~kAveV~~~A~SLNSsd~fv 549 (827)
T KOG0443|consen 481 IYEGKEPPHFLAIFQGKLIIFKGGTSE-----------EGNTYPAPSTRLFQVQGTGPSNTKAVEVPAVASSLNSSDCFV 549 (827)
T ss_pred eecCCCChHHHHhhCCceEEEecCcCC-----------CCCccCCCceEEEEEeccCcccceeEeeccccccccccceEE
Confidence 9999999999999999 9999999872 246778888999999999999999999999999999999999
Q ss_pred EEcCCeEEEEECCCCCHHHHHHHHHHHHHhCCCCceEEeecCCCchhhhhhcCCCCCCCccc-cccCCCCCCeeEEEEec
Q 002853 549 LQNGASVFTWIGNLSSSRDHDLLDRMVELINPTWQPISVREGSEPEVFWNALGGKSEYPREK-EIKGFIEDPHLFTCTLT 627 (873)
Q Consensus 549 L~~~~~vyvW~G~~ss~~e~~~a~~~a~~l~~~~~~~~v~EG~E~~~FW~~LGg~~~y~~~~-~~~~~~~~prLF~~s~~ 627 (873)
|+++.++|+|+|++|+.+||++|++++..|+ +.+...+.||+||++||++|||+.+|++.+ ......++||||.|++.
T Consensus 550 L~t~s~~ylW~G~gss~~e~e~A~~v~~~l~-~~~~~~v~EG~Ep~~FWe~LGGk~~Y~~sk~~~~~~~~~PrLF~Cs~~ 628 (827)
T KOG0443|consen 550 LKTGSSVYLWCGKGSSGDEREMAKRVLDLLK-RCQSTAVKEGSEPDEFWELLGGKAEYPSSKRLEEKPERDPRLFSCSNK 628 (827)
T ss_pred EecCCeEEEEeCCCCCHHHHHHHHHHHHHHh-cCChhhhhcCCCchhhHHHcCCCCCCCcCccccccCCCCCcEEEEEec
Confidence 9999999999999999999999999999997 355677899999999999999999999988 44567889999999999
Q ss_pred CCceEEeeecccccCCCCCCCEEEEeCCCeEEEEEcCCCCHHHHHHHHHHHHHHHHhcccccCCCCCCcEEEecCCCCCh
Q 002853 628 EGDLKVKEIYNFTQDDLTTEDILVLDCCREIYVWIGCHSDLNSKQQALNIGQKFLETDILVEGLSLETPIYVVTEGHEPP 707 (873)
Q Consensus 628 ~G~~~v~Ei~~F~Q~DL~~ddv~ILD~~~~IyVWiG~~a~~~ek~~Al~~A~~Yl~~~~~~~~~~~~~pi~~V~eG~EP~ 707 (873)
+|.|.++||++|+||||++|||||||||++||||||++++++||..|+.+|++|++++ ..+||++.|||++|+||+||+
T Consensus 629 ~g~f~~~EI~~F~QdDL~tdDi~lLDt~~evfvWvG~~a~~~eK~~Al~~~~~yl~~~-~p~gr~~~TPI~vV~qG~EPp 707 (827)
T KOG0443|consen 629 TGSFVVEEIYNFTQDDLMTDDIMLLDTWSEVFVWVGQEANEKEKEEALTIGQKYLETD-LPEGRDPRTPIYVVKQGHEPP 707 (827)
T ss_pred CCcEEEEEecCcchhhccccceEEEecCceEEEEecCCCChhHHHHHHHHHHHHHhcc-CcccCCCCCceEEecCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999 446999999999999999999
Q ss_pred hchhcc-ccCcccccccCCcHHHHHHHhcCCCccccccccCCCCCCCCCCccccccccccCCCCCCCCCCCcccccccCC
Q 002853 708 FFTCFF-AWDPLKAKMHGNSFERKLAILKGRPSIEASVRNSWKPYFGETTPDSLRSRSVSSNGLQGSGSPIPSISSSKLN 786 (873)
Q Consensus 708 ~Ft~~F-~Wd~~k~~~~~~s~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (873)
+||++| +||+.| +||++|++.|+++.+ +..++.++. ++.++
T Consensus 708 ~Ftg~F~~WD~~k-----wS~~~~~~~l~~~~~------~~~~~~~~~---------------------------~a~~~ 749 (827)
T KOG0443|consen 708 FFTGFFLSWDPSK-----WSFQKKLKDLKNKVT------YNARAISEI---------------------------SADVR 749 (827)
T ss_pred hhhccccccCCcc-----cccchHHHHHhcccc------cchhhccch---------------------------hhhhh
Confidence 999999 899998 899999999999864 222222222 22222
Q ss_pred CcccCCcCCCchhhhhhcccCCCCCCCCCCCCCCCCCccccccccccccCCcccccccceeeeccCCCCCCCcccccccc
Q 002853 787 SADRHRAFCETPTAQLLFSESTLDKDSLTGEPSSSSKSTKAIQFNESEAGVSSLIYSYEQLRVDSRNPVIGIDVTKREVS 866 (873)
Q Consensus 787 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~e~y 866 (873)
| ||++.|..+ + ++.-.++||||||+++|+||||+||.||||+|
T Consensus 750 s--------------k~~~~~~~~-~----------------------~~~p~~~~~~e~l~~~~~~~~~~id~~rrE~y 792 (827)
T KOG0443|consen 750 S--------------KLYPDSLNP-D----------------------SEAPRPAFPYEQLLTQSEDPVPDIDPTRREAY 792 (827)
T ss_pred c--------------ccccccCCC-C----------------------ccCcccCCCHHHHhccccCcCCCCChhHhhhh
Confidence 2 445554432 1 00111689999999999999999999999999
Q ss_pred ccc
Q 002853 867 PVA 869 (873)
Q Consensus 867 l~~ 869 (873)
|+.
T Consensus 793 Ls~ 795 (827)
T KOG0443|consen 793 LSE 795 (827)
T ss_pred ccH
Confidence 985
No 2
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=100.00 E-value=4.6e-106 Score=889.25 Aligned_cols=686 Identities=25% Similarity=0.454 Sum_probs=576.7
Q ss_pred cCCccccEEEEEEECCeEeecCCCCCCccccCCeEEEEeeeecCCCCCceEEEEEccCCcCchhhhHHHHHHHHHHHHhC
Q 002853 14 GAGKKLGLEIWCIENLQLVSVPKSSHGKFYTGSAYVILNTALLKSGPPQHDIHYWLGNDVNEEDSTLVSDKALELDAALG 93 (873)
Q Consensus 14 g~G~~~gl~iWrIe~~~~~~vp~~~~G~Fy~gdsYIVl~t~~~~~g~~~~~i~~W~G~~ss~de~g~AA~~aveLd~~lg 93 (873)
.+|+-||+.||.||||-|..+++..||+||++||||||.|+...+|.++|.||||+|.+++.|...++|++||.|.++||
T Consensus 496 DvGqlpGltiWeIENF~P~~~eEafHGkFYeaDcYiVLKT~~ddsG~L~weIfyWiG~eAtLDK~aCsAiHAVnLRN~Lg 575 (1255)
T KOG0444|consen 496 DVGQLPGLTIWEIENFYPSIMEEAFHGKFYEADCYIVLKTTRDDSGQLRWEIFYWIGEEATLDKGACSAIHAVNLRNHLG 575 (1255)
T ss_pred ccCCCCCceEEeehhhhhHHHHHHhccceecccEEEEEEeecccccccceeEEEEecccccccchhhhHHHhhhhhhhhC
Confidence 89999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred CCceEEEeeccCCcHHHHhhhCCcEEEecCC-ccCCCCCCCCCccceEEEEeeCc-ceEEEEEecCCCCCccCCCceeee
Q 002853 94 SCTVQYREVQGQETEKFLSYFRPCIIPLDGK-YSLRSGKSNGETYKISMLTCKGD-HVVRVKEVPFSRSSLNHNDVFIVD 171 (873)
Q Consensus 94 g~~vq~Re~QG~Es~~Fl~~Fk~~ii~~~Gg-~~sgf~~~~~~~~~~rL~~vkG~-~~v~~~eV~~s~sSLns~DvFILd 171 (873)
..+..+||.||.||++||++|..-|+|.+|| .+|||..++...+.+|||++.++ ..|.+..||++..||.++.||+||
T Consensus 576 A~CRTvREEmgDEsEeFL~lF~~ei~YIEGGrTasGFYT~E~~~h~TRlYrv~~~g~~i~lEPVpl~~tSLDPRf~FlLD 655 (1255)
T KOG0444|consen 576 ATCRTVREEMGDESEEFLTLFGEEIVYIEGGRTASGFYTTEKPAHLTRLYRVGVNGTAIELEPVPLSVTSLDPRFCFLLD 655 (1255)
T ss_pred chhhhhHHhhCccHHHHHHHhcceeEEEecCceecceeeecchHHhhhhheeccccceeEeeccCccccccCcceEEEEe
Confidence 9999999999999999999999999999999 88999999888889999999887 579999999999999999999999
Q ss_pred CCCeEEEEeCCCCCHHHHHHHHHHHHHhhccCCCCceeEEEEcCCccCCCCChhhHHHHcCCCCCCCCCCCCC-CCCCCC
Q 002853 172 TASKIFLFSGCNSSIQERAKALEVVQYIKEDKHGGKCGVATVEDGKFVGDSDVGEFWSLFGGYAPIPRDSPSA-FQQQPD 250 (873)
Q Consensus 172 ~~~~iyvW~G~~S~~~Er~kA~~va~~ik~~~~~g~~~v~~veeG~~~~~~E~~eFw~~lGg~~~~~~~~~~~-~~~~~~ 250 (873)
.+..||+|.|..|...--.||+.+|.+|.+.++.|+|+|...-+|. |+.|||++|||.+.-+...... ..+.+.
T Consensus 656 ~G~~IyiW~G~~s~~t~~~KARLfAEkinK~eRKgK~EI~l~rQg~-----e~pEFWqaLgg~p~e~~~~ikeHVPEdf~ 730 (1255)
T KOG0444|consen 656 AGETIYIWSGYKSRITVSNKARLFAEKINKRERKGKSEIELCRQGR-----EPPEFWQALGGNPDEPQGAIKEHVPEDFV 730 (1255)
T ss_pred CCceEEEEeccchhcccchHHHHHHHHhhhhhccCceeeehhhhcC-----CCHHHHHHhCCCCcccccchhhcCCcccC
Confidence 9999999999999999999999999999999999999999999984 8999999999986543322111 112344
Q ss_pred CCceeEEEEc-CCCCEEE--Ee---cCCCccccCCCCceEEeeCCCeEEEEecCCCCHHHHHHHHHHHHHHHHhcCCCCC
Q 002853 251 TPSTTFFWIN-LQGKLCQ--IA---ANSLNKDMLEKDKCYMLDCVNEVFVWTGRNTSITERRISISASEDFLRNQGRTTG 324 (873)
Q Consensus 251 ~~~~rLy~v~-~~G~l~~--~e---~~~~~q~~L~~~~vyILD~g~eIyVWiG~~as~~erk~Al~~A~~y~~~~~R~p~ 324 (873)
+..||||+|+ .-|.|+. ++ ...+.|++|.+..||||||.+.||||+|+++++-.|.+|.++.+++..+..||..
T Consensus 731 p~qpkLYkV~lGmGyLELPQvel~P~~~l~q~lL~sk~VyiLDc~sDiF~W~GkKs~RLvraAa~KL~~EL~~M~dRPdy 810 (1255)
T KOG0444|consen 731 PEQPKLYKVNLGMGYLELPQVELLPKGILKQDLLGSKGVYILDCNSDIFLWIGKKSNRLVRAAAQKLVVELHQMIDRPDY 810 (1255)
T ss_pred CCCcceEEEccccceeecchhhhchhhHHHHHhhcCCeEEEEecCCceEEEecccchHHHHHHHHHHHHHHHhhhcCcch
Confidence 6679999996 4677653 32 2458899999999999999999999999999999999999999999999999667
Q ss_pred ceEEEecCCccchhhhhhcccCCCCCCC--ccc------ccchhHH-HhhhhhcCCCCCCC--Cc---c---C-CCCccc
Q 002853 325 THLTFLTEGLETTVFRSYFDSWPQIAEP--KLY------DEGREKV-AAIFKQQGHDVKEL--PE---E---D-FEPYVN 386 (873)
Q Consensus 325 t~i~~V~eG~Ep~~Fk~~F~~W~~~~~~--~~~------~~~~~kv-a~~~~~~~~dv~~l--p~---~---e-~~~~~d 386 (873)
+.|.++.||.|...|+.+|.+|++.... +-. ..|.-|+ ++.-.+...|...| |. + | .|.+.+
T Consensus 811 A~V~R~~EG~E~q~FrsKFagWDev~~VDyTRta~sV~~~pg~~k~~~~k~~~mraDLaALFlpRQp~MslaEaEqLmEe 890 (1255)
T KOG0444|consen 811 AQVYRETEGEESQMFRSKFAGWDEVVPVDYTRTADSVQRVPGDLKVIVKKDNMMRADLAALFLPRQPSMSLAEAEQLMEE 890 (1255)
T ss_pred hheeeccCccHHHHHHHhhCCcceeeeeecccchHHHhhCcchhhHHHhhhhhhHHHHHHHhcCCCCCCChHHHHHHHHH
Confidence 9999999999999999999999986431 111 1111111 11111123444433 32 1 1 133444
Q ss_pred cCC---cEEEEEEECCceeecCCcccceeeeccEEEEEeecC--C----CC----------------------cceEEEE
Q 002853 387 CRG---ILKVWRVNGDELSLLPAAEQMKLFSGDCYIVKYTYP--G----NG----------------------RDENVIY 435 (873)
Q Consensus 387 ~~g---~l~VWrV~~~~~~~lp~~~~G~FysgdcYIvl~ty~--~----~~----------------------~~~~~iy 435 (873)
++- -++-+.++|..++.+|++++|+||++||||++|.|- . ++ ..+|++|
T Consensus 891 wNyDLe~ME~FVLEgKKFvrLPeeEfG~FYT~dCYVFLCRY~vp~EE~Eeg~ed~~n~~advsks~e~~qPE~dfqCvVY 970 (1255)
T KOG0444|consen 891 WNYDLELMESFVLEGKKFVRLPEEEFGIFYTMDCYVFLCRYAVPPEEDEEGEEDHANPAADVSKSDEDDQPEMDFQCVVY 970 (1255)
T ss_pred hcccHHHHHHHhhcCchhccCCHHHhCeeeccceEEEEEeeecCCCCccccccccCCccccccccccccCCccceeEEEE
Confidence 443 356788999999999999999999999999999992 1 00 1379999
Q ss_pred EEcCCCCCHHHH-HHHHHHHHHHHHhccCCceEEEeeccCCcHHHHhhcCc-EEEEecCcccccceeeeecccccccccc
Q 002853 436 AWFGHESMTEDR-AAAISHMSAIVDSTRGEAVMAQVHQDMEPVQFFLIFQS-LIVFKGGLSTQYKKFIVEEGIVDETYDE 513 (873)
Q Consensus 436 ~W~G~~ss~~e~-~~aa~~a~~l~~~~~~~~vq~Rv~QGkEp~~Fl~lF~~-~iI~kGg~~~~~~~~~~~~~~~~~~~~~ 513 (873)
||||++++...+ ...+.+..+....++++.-.+|++|.+|-+.||+.|+. +||++|.+.. .+ .. ..
T Consensus 971 FWQGR~AsNMGWLtFTF~LQkkFe~~F~~kLEVVRm~QQQEN~KFlSHFKRKFiIhrGkRk~-~~----~~-------G~ 1038 (1255)
T KOG0444|consen 971 FWQGRDASNMGWLTFTFQLQKKFEEIFKDKLEVVRMYQQQENHKFLSHFKRKFIIHRGKRKL-TK----NL-------GG 1038 (1255)
T ss_pred EecCCccCccceEEEEEEehhhHHHhcccceeeeeHhhhhhhhHHHHHhhhhheeeccccch-hh----hh-------cC
Confidence 999999999877 44566777888889999999999999999999999996 7788777632 00 11 22
Q ss_pred cceEEEEEEecCCC-ceEEEEeccCCCCcCCCCeEEEEc-------CCeEEEEECCCCCHHHHHHHHHHHHHhC-CCCce
Q 002853 514 KKMALFCIQGTSPC-NMQAFQVDRVSTCLNSSYCYILQN-------GASVFTWIGNLSSSRDHDLLDRMVELIN-PTWQP 584 (873)
Q Consensus 514 ~~~~Lf~V~g~~~~-~~~avqV~~~~ssLnS~d~fIL~~-------~~~vyvW~G~~ss~~e~~~a~~~a~~l~-~~~~~ 584 (873)
..+.||++|.++.. .+++|||++.++.|||.+||||.. ++.+|+|.|+.|+++|++.|..+..... ..+.+
T Consensus 1039 ~~pelfq~R~NGsalctR~IQin~da~~LnS~FC~iL~vPFe~~~~~gvvy~w~gk~sdp~e~~~a~d~~~~~~d~~~~~ 1118 (1255)
T KOG0444|consen 1039 KWPELFQMRANGSALCTRTIQINCDANQLNSAFCHMLRIPFEEDGHRGVVYVWMGKDSDPREHEFASDLVVRDDDNDFRI 1118 (1255)
T ss_pred CCchheeeecCCccceeeeEEecCcHHHHhhhhHheEecccccCCCceEEEEEeccCCChHHHHHHHHhcCccccchhhh
Confidence 45789999987654 689999999999999999999974 3579999999999999999976654432 33556
Q ss_pred EEeecCCCchhhhhhcCCCCCCCccccccCCCCCCeeEEEEecCCceEEeee-cccccCCCCCCCEEEEeCCCeEEEEEc
Q 002853 585 ISVREGSEPEVFWNALGGKSEYPREKEIKGFIEDPHLFTCTLTEGDLKVKEI-YNFTQDDLTTEDILVLDCCREIYVWIG 663 (873)
Q Consensus 585 ~~v~EG~E~~~FW~~LGg~~~y~~~~~~~~~~~~prLF~~s~~~G~~~v~Ei-~~F~Q~DL~~ddv~ILD~~~~IyVWiG 663 (873)
..++||+|+.+||..+||++.|..... .....|||+|++.+|+|.++|- .+||||||..+|+||||.+..||.|||
T Consensus 1119 ~~~~egee~e~fw~~~g~~k~ye~d~~---~~khtrlfrc~nekgyfa~sek~~DfcqDDl~dddim~ldng~~v~~w~g 1195 (1255)
T KOG0444|consen 1119 VEVQEGEENEEFWKVLGGKKKYETDSS---FVKHTRLFRCTNEKGYFAISEKTVDFCQDDLDDDDIMILDNGDAVFLWIG 1195 (1255)
T ss_pred hccCCccchHHHhcccCCCCccchhHH---HHHHHHHHhccchhhhhhHhHhhhhhhhccchhhhhhhhcccceeeeeec
Confidence 788999999999999999998865432 2334789999999999999887 599999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcccccCCCCCCc--EEEecCCCCChhchhcc-ccCcccccc
Q 002853 664 CHSDLNSKQQALNIGQKFLETDILVEGLSLETP--IYVVTEGHEPPFFTCFF-AWDPLKAKM 722 (873)
Q Consensus 664 ~~a~~~ek~~Al~~A~~Yl~~~~~~~~~~~~~p--i~~V~eG~EP~~Ft~~F-~Wd~~k~~~ 722 (873)
...+..+-+.+...||.|..+.+. +....| ...+..|.|...|+++| +|...+..|
T Consensus 1196 ~~~s~ie~Kls~~a~Qvy~~~mr~---k~~e~pr~~~l~~~gre~~~F~~cfhaws~~~~~~ 1254 (1255)
T KOG0444|consen 1196 ARSSDIEAKLSYQAAQVYHASMRM---KANEKPRKFMLAVRGRESCRFRKCFHAWSKMKEPM 1254 (1255)
T ss_pred ceehhHHHHHHHHHHHHHHHhccc---ccccchHHHHHHHhcchhhhhHHHHHHHHHhhccc
Confidence 999999999999999999987653 333444 46788999999999999 998776543
No 3
>KOG0445 consensus Actin regulatory protein supervillin (gelsolin/villin family) [Cytoskeleton]
Probab=100.00 E-value=2e-75 Score=647.68 Aligned_cols=529 Identities=24% Similarity=0.460 Sum_probs=427.2
Q ss_pred ceEEEEeeCcceEEEEEecCCCCCccCCCceeeeCCCeEEEEeCCCCCHHHHHHHHHHHHHhhccCCCCce---eEEEEc
Q 002853 138 KISMLTCKGDHVVRVKEVPFSRSSLNHNDVFIVDTASKIFLFSGCNSSIQERAKALEVVQYIKEDKHGGKC---GVATVE 214 (873)
Q Consensus 138 ~~rL~~vkG~~~v~~~eV~~s~sSLns~DvFILd~~~~iyvW~G~~S~~~Er~kA~~va~~ik~~~~~g~~---~v~~ve 214 (873)
.++|+||||+++|+++.|++..+|||++|||||..++.+|.|.|..||..|++||.+++..|..+...| | .|++|.
T Consensus 223 ~vMLlqVkGr~hVqtRLVeP~~ssln~gdCF~lv~~~~lf~yvG~faNviEk~kas~lc~~I~~k~dLg-CtAt~ivtit 301 (919)
T KOG0445|consen 223 RVMLLQVKGRRHVQTRLVEPRASSLNSGDCFLLVSPHCLFLYVGEFANVIEKAKASELCTLIQTKRDLG-CTATYIVTIT 301 (919)
T ss_pred ceEEEEEcccccceeEEechhhcccccCceEEEechhHHhhhhhHHHHHHHHhHHHHHHHHHhhcccCC-ceeEEEEEEe
Confidence 479999999999999999999999999999999999999999999999999999999999998765443 5 366666
Q ss_pred CCccCCCCChhhHHHHcCCCCCCCCCCCCCCCCCCCCCce---eEEEEcCCCCEEEEec--CCCccccCCCCceEEeeCC
Q 002853 215 DGKFVGDSDVGEFWSLFGGYAPIPRDSPSAFQQQPDTPST---TFFWINLQGKLCQIAA--NSLNKDMLEKDKCYMLDCV 289 (873)
Q Consensus 215 eG~~~~~~E~~eFw~~lGg~~~~~~~~~~~~~~~~~~~~~---rLy~v~~~G~l~~~e~--~~~~q~~L~~~~vyILD~g 289 (873)
+ ......-...||++|||...+.+....++++.++...+ .+|++. +.++.+.+. ..++-++|++..|.|+|.|
T Consensus 302 ~-~~~~t~~~~~Fw~llg~qs~~~~~g~a~ede~fE~~iietN~iyr~~-dd~l~p~~~~w~ipk~~~l~p~eVLvFDFG 379 (919)
T KOG0445|consen 302 E-INTHTHAAKDFWKLLGGQSSYQSAGDAKEDELFEAAIIETNCIYRLM-DDKLVPDDDYWKIPKCSLLQPKEVLVFDFG 379 (919)
T ss_pred c-cchhHHHHHHHHHHhCCccchhhcCCccccchHHHHHHHhhhHHhhc-ccccCccccccccccccccCcceEEEEecC
Confidence 6 32222335789999999888766555555554443333 345553 455555442 3577799999999999999
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHHHHh-----------------cCCCCCceEEEecCCccchhhhhhcccCCCCCCC
Q 002853 290 NEVFVWTGRNTSITERRISISASEDFLRN-----------------QGRTTGTHLTFLTEGLETTVFRSYFDSWPQIAEP 352 (873)
Q Consensus 290 ~eIyVWiG~~as~~erk~Al~~A~~y~~~-----------------~~R~p~t~i~~V~eG~Ep~~Fk~~F~~W~~~~~~ 352 (873)
+|||||-|+.++...|+.|+++|+++++. .|||.|+..-+|+||.|+.+||++|.+|+.....
T Consensus 380 SEvYVW~Gk~~~~~~~~~A~~lAk~l~~~dy~nc~~npld~~~~~~~gRPeW~i~gkitq~~et~LFKeKFsDWpE~~r~ 459 (919)
T KOG0445|consen 380 SEVYVWHGKEVTLAQRKIAFQLAKHLWNFDYENCDINPLDLIPRKGQGRPEWAIFGKITQHNETILFKEKFSDWPELKRS 459 (919)
T ss_pred ceEEEEcCccCchHHHHHHHHHHHHHhCCCcccCccccccccccccCCCcceeeechhhcchhhhhHHHhhccchHhhhh
Confidence 99999999999999999999999998763 4897789889999999999999999999986432
Q ss_pred cccccchhHHHhhhhhcCCCCC-----CC---Ccc------CC---------------CCccccCCcEEEEEEECCceee
Q 002853 353 KLYDEGREKVAAIFKQQGHDVK-----EL---PEE------DF---------------EPYVNCRGILKVWRVNGDELSL 403 (873)
Q Consensus 353 ~~~~~~~~kva~~~~~~~~dv~-----~l---p~~------e~---------------~~~~d~~g~l~VWrV~~~~~~~ 403 (873)
.-.. .+..+..++....+++ .| |.. +. ..++-.+..+.+|.|.++....
T Consensus 460 ~~~~--k~~~~~~k~np~~~v~a~~~t~~~~ep~~~~~~iL~~~nlgrg~~l~d~~drr~fdVis~s~d~W~i~ef~~~~ 537 (919)
T KOG0445|consen 460 NEKN--KGELAQHKENPRTDVKAYDVTRMVSEPQTTAGTILDGVNLGRGYGLVDGHDRRQFDVISVSVDVWHILEFDYSR 537 (919)
T ss_pred hccC--chhhhhhhcCCceeeeehhheecccchhhhHHHHhhhhccCCceeeeecccceeeeeeeecccceeeehhhhhh
Confidence 1111 1122211111112222 11 111 00 1122235678999999999999
Q ss_pred cCCcccceeeeccEEEEEeecCC----------------CCcceEEEEEEcCCCCCHHHHHHHHHHHHHHHHhccCCceE
Q 002853 404 LPAAEQMKLFSGDCYIVKYTYPG----------------NGRDENVIYAWFGHESMTEDRAAAISHMSAIVDSTRGEAVM 467 (873)
Q Consensus 404 lp~~~~G~FysgdcYIvl~ty~~----------------~~~~~~~iy~W~G~~ss~~e~~~aa~~a~~l~~~~~~~~vq 467 (873)
+| +.+||||++|||||.|.|.- .||++|++|||||+||+..++|+||+++++||+. +..|
T Consensus 538 ~~-~~~ghF~s~~~YvvrWky~Is~~Vr~~~~g~~~~r~~Gr~rcvyf~WqG~hst~~ekG~~AL~tvElD~e---~gaq 613 (919)
T KOG0445|consen 538 LP-QSIGHFHSGDAYVVRWKYMISTAVRSRQKGEHSVRAAGRERCVYFFWQGRHSTVSEKGTSALMTVELDEE---RGAQ 613 (919)
T ss_pred hh-hhhhccccCceEEEEEEEEeehhhhhhhcCccchhhcccceEEEEEEccccCCcccccceeeeeeeeccc---cCce
Confidence 99 89999999999999999941 3788999999999999999999999999999884 5689
Q ss_pred EEeeccCCcHHHHhhcCc-EEEEecCcccccceeeeecccccccccccceEEEEEEecCCCceEEEEeccCCCCcCCCCe
Q 002853 468 AQVHQDMEPVQFFLIFQS-LIVFKGGLSTQYKKFIVEEGIVDETYDEKKMALFCIQGTSPCNMQAFQVDRVSTCLNSSYC 546 (873)
Q Consensus 468 ~Rv~QGkEp~~Fl~lF~~-~iI~kGg~~~~~~~~~~~~~~~~~~~~~~~~~Lf~V~g~~~~~~~avqV~~~~ssLnS~d~ 546 (873)
+||.||+||+.|++||+| |+++.|-.. ...-+||+|+|..+..+-..||++..++|.|+-+
T Consensus 614 vrv~qG~Ep~~Fl~lF~g~m~vhsgr~E------------------~~~erlY~v~G~vs~Et~l~Ev~c~~S~LRSr~s 675 (919)
T KOG0445|consen 614 VRVLQGKEPPCFLQLFQGGMVVHSGRRE------------------EEEERLYCVRGEVSVETNLLEVACHCSSLRSRTS 675 (919)
T ss_pred eEeecCCCccHHHHHhcCCeeEEcCchh------------------hchhheeeEecccccchhhhHhhhccccccccce
Confidence 999999999999999996 777665542 1124699999999999999999999999999999
Q ss_pred EEEEcCC--eEEEEECCCCCHHHHHHHHHHHHHhC-------CCCceEEeecCCCchhhhhhcCCCCCCCccccccCCCC
Q 002853 547 YILQNGA--SVFTWIGNLSSSRDHDLLDRMVELIN-------PTWQPISVREGSEPEVFWNALGGKSEYPREKEIKGFIE 617 (873)
Q Consensus 547 fIL~~~~--~vyvW~G~~ss~~e~~~a~~~a~~l~-------~~~~~~~v~EG~E~~~FW~~LGg~~~y~~~~~~~~~~~ 617 (873)
||+.+++ .+|+|+|..+-.+.|..+..+++.|. .+..+.+|+||++|..||++||-+. ..+
T Consensus 676 mv~~~~~~~~~~~whg~k~~~ht~~v~v~aa~~~~~q~pgs~~~~~~~Eveegs~~~~~~~alGrkd----------f~~ 745 (919)
T KOG0445|consen 676 MVVLNVNKALIYLWHGCKAQAHTKEVGVTAANKIKEQCPGSSSKVTIHEVEEGSEPLGFWDALGRKD----------FNF 745 (919)
T ss_pred EEEEeccccceEEEecccCCcchhhHhHHHHHHHHHhCCCccccceeEeecCCCCchhhhhhccccc----------ccc
Confidence 9998774 69999999999999999888887764 2356789999999999999999764 467
Q ss_pred CCeeEEEEecCCceEEeee-------cccccCCCCCCCEEEEeCCCeEEEEEcCCCCHHHHHHHHHHHHHHHHhcccccC
Q 002853 618 DPHLFTCTLTEGDLKVKEI-------YNFTQDDLTTEDILVLDCCREIYVWIGCHSDLNSKQQALNIGQKFLETDILVEG 690 (873)
Q Consensus 618 ~prLF~~s~~~G~~~v~Ei-------~~F~Q~DL~~ddv~ILD~~~~IyVWiG~~a~~~ek~~Al~~A~~Yl~~~~~~~~ 690 (873)
.||||.++.+. ++|+ ++|+|+||.+. ||||.|+++|+|. -..+|+.||++|.+|+++
T Consensus 746 ~~RlF~~sS~q----a~els~p~rc~~pFsQ~~Ly~a--fLvD~gdelwLW~----w~s~r~~Aleta~~Ywk~------ 809 (919)
T KOG0445|consen 746 APRLFILSSSQ----ATELSYPARCPMPFSQEDLYSA--FLVDNGDELWLWQ----WASDRKSALETALQYWKN------ 809 (919)
T ss_pred cceeeeccchh----hhhccCcccCCCcccHHHHhhh--eeeccCCeeEeeh----hhhHHHHHHHHHHHHHhc------
Confidence 89999998765 5555 69999999875 9999999999999 356799999999999984
Q ss_pred CCCCCcEEEecCCCCChhchhcc-ccCccccc
Q 002853 691 LSLETPIYVVTEGHEPPFFTCFF-AWDPLKAK 721 (873)
Q Consensus 691 ~~~~~pi~~V~eG~EP~~Ft~~F-~Wd~~k~~ 721 (873)
+ ..|-+||..|.||..||.+| .|......
T Consensus 810 ~--~~p~~vV~aGlEPl~Fk~lFp~We~red~ 839 (919)
T KOG0445|consen 810 L--KAPSYVVHAGLEPLTFKNLFPSWEHREDI 839 (919)
T ss_pred c--CCCceEEEcCcChhhhhhhCCCceecccc
Confidence 2 26789999999999999999 99987543
No 4
>KOG0443 consensus Actin regulatory proteins (gelsolin/villin family) [Cytoskeleton]
Probab=100.00 E-value=1.1e-67 Score=602.84 Aligned_cols=320 Identities=28% Similarity=0.499 Sum_probs=290.2
Q ss_pred cccCCccccEEEEEEECCeEeecCCCCCCccccCCeEEEEeeeecCCCCCceEEEEEccCCcCchhhhHHHHHHHHHHHH
Q 002853 12 FEGAGKKLGLEIWCIENLQLVSVPKSSHGKFYTGSAYVILNTALLKSGPPQHDIHYWLGNDVNEEDSTLVSDKALELDAA 91 (873)
Q Consensus 12 ~~g~G~~~gl~iWrIe~~~~~~vp~~~~G~Fy~gdsYIVl~t~~~~~g~~~~~i~~W~G~~ss~de~g~AA~~aveLd~~ 91 (873)
-+|.| .++||||++...+|||..+||+||+||||||||||....++..|.||.|+|++|+++|+.+|+.+|++|++.
T Consensus 395 ddg~G---~~~Vwrv~~~~~~~v~~~~~g~fy~GdcYlvlYtY~~~~~~~~~iiY~W~G~qAs~ee~~~a~~~A~~l~~s 471 (827)
T KOG0443|consen 395 DDGSG---KLQVWRVEGDEKQPVDIADYGKFYGGDCYLVLYTYPRGEERTEHIIYVWQGKQASQEERAAAISLAKALVES 471 (827)
T ss_pred ecCCC---cEEEEEEcCceeeecChHHhCcccCCCeEEEEEeeccCCcccceEEEEEecccCCHHHHHHHHHHHHHHhhh
Confidence 45788 799999999999999999999999999999999998766688999999999999999999999999999999
Q ss_pred hCCCceEEEeeccCCcHHHHhhhCCcEEEecCCccCCCCCCCCCccceEEEEeeCc--ceEEEEEecCCCCCccCCCcee
Q 002853 92 LGSCTVQYREVQGQETEKFLSYFRPCIIPLDGKYSLRSGKSNGETYKISMLTCKGD--HVVRVKEVPFSRSSLNHNDVFI 169 (873)
Q Consensus 92 lgg~~vq~Re~QG~Es~~Fl~~Fk~~ii~~~Gg~~sgf~~~~~~~~~~rL~~vkG~--~~v~~~eV~~s~sSLns~DvFI 169 (873)
++|.++|+|++||+||+||+++|+|.+|+++||.+...+. .....++||||+|. ++.++.||+..++||||+||||
T Consensus 472 ~kg~~vq~rv~~GkEP~hF~~iFqgkliifkgg~s~~g~~--~~~~~t~LFqV~Gt~~~n~kAveV~~~A~SLNSsd~fv 549 (827)
T KOG0443|consen 472 LKGVPVQVRIYEGKEPPHFLAIFQGKLIIFKGGTSEEGNT--YPAPSTRLFQVQGTGPSNTKAVEVPAVASSLNSSDCFV 549 (827)
T ss_pred cCCceeEEEeecCCCChHHHHhhCCceEEEecCcCCCCCc--cCCCceEEEEEeccCcccceeEeeccccccccccceEE
Confidence 9999999999999999999999999999999998752221 23345899999987 5689999999999999999999
Q ss_pred eeCCCeEEEEeCCCCCHHHHHHHHHHHHHhhccCCCCceeEEEEcCCccCCCCChhhHHHHcCCCCCCCCCCCCCCCCCC
Q 002853 170 VDTASKIFLFSGCNSSIQERAKALEVVQYIKEDKHGGKCGVATVEDGKFVGDSDVGEFWSLFGGYAPIPRDSPSAFQQQP 249 (873)
Q Consensus 170 Ld~~~~iyvW~G~~S~~~Er~kA~~va~~ik~~~~~g~~~v~~veeG~~~~~~E~~eFw~~lGg~~~~~~~~~~~~~~~~ 249 (873)
|.+++.+|+|+|+.|+..||++|.+++..|+ +|+...+.|| +|+++||++|||+.+|++... .+ ..
T Consensus 550 L~t~s~~ylW~G~gss~~e~e~A~~v~~~l~------~~~~~~v~EG-----~Ep~~FWe~LGGk~~Y~~sk~--~~-~~ 615 (827)
T KOG0443|consen 550 LKTGSSVYLWCGKGSSGDEREMAKRVLDLLK------RCQSTAVKEG-----SEPDEFWELLGGKAEYPSSKR--LE-EK 615 (827)
T ss_pred EecCCeEEEEeCCCCCHHHHHHHHHHHHHHh------cCChhhhhcC-----CCchhhHHHcCCCCCCCcCcc--cc-cc
Confidence 9999999999999999999999999999997 3666778888 599999999999999986442 11 12
Q ss_pred CCCceeEE-EEcCCCCEEEEecCCCccccCCCCceEEeeCCCeEEEEecCCCCHHHHHHHHHHHHHHHHhc---CCCCCc
Q 002853 250 DTPSTTFF-WINLQGKLCQIAANSLNKDMLEKDKCYMLDCVNEVFVWTGRNTSITERRISISASEDFLRNQ---GRTTGT 325 (873)
Q Consensus 250 ~~~~~rLy-~v~~~G~l~~~e~~~~~q~~L~~~~vyILD~g~eIyVWiG~~as~~erk~Al~~A~~y~~~~---~R~p~t 325 (873)
....|||| |.+..|.|..+|+..|+|+||.++|+|||||++|||||+|++++.+||..|+.+|++|++.. ||.|.|
T Consensus 616 ~~~~PrLF~Cs~~~g~f~~~EI~~F~QdDL~tdDi~lLDt~~evfvWvG~~a~~~eK~~Al~~~~~yl~~~~p~gr~~~T 695 (827)
T KOG0443|consen 616 PERDPRLFSCSNKTGSFVVEEIYNFTQDDLMTDDIMLLDTWSEVFVWVGQEANEKEKEEALTIGQKYLETDLPEGRDPRT 695 (827)
T ss_pred CCCCCcEEEEEecCCcEEEEEecCcchhhccccceEEEecCceEEEEecCCCChhHHHHHHHHHHHHHhccCcccCCCCC
Confidence 23456999 66789999999999999999999999999999999999999999999999999999999765 888999
Q ss_pred eEEEecCCccchhhhhhcccCCCCC
Q 002853 326 HLTFLTEGLETTVFRSYFDSWPQIA 350 (873)
Q Consensus 326 ~i~~V~eG~Ep~~Fk~~F~~W~~~~ 350 (873)
||++|.||+||+.|+.+|.+|+...
T Consensus 696 PI~vV~qG~EPp~Ftg~F~~WD~~k 720 (827)
T KOG0443|consen 696 PIYVVKQGHEPPFFTGFFLSWDPSK 720 (827)
T ss_pred ceEEecCCCCCChhhccccccCCcc
Confidence 9999999999999999999999875
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=100.00 E-value=6.9e-43 Score=387.95 Aligned_cols=317 Identities=24% Similarity=0.435 Sum_probs=274.7
Q ss_pred CcEEEEEEECCceeecCCcccceeeeccEEEEEeecC-CCCcceEEEEEEcCCCCCHHHHHHHHHHHHHHHHhccCCceE
Q 002853 389 GILKVWRVNGDELSLLPAAEQMKLFSGDCYIVKYTYP-GNGRDENVIYAWFGHESMTEDRAAAISHMSAIVDSTRGEAVM 467 (873)
Q Consensus 389 g~l~VWrV~~~~~~~lp~~~~G~FysgdcYIvl~ty~-~~~~~~~~iy~W~G~~ss~~e~~~aa~~a~~l~~~~~~~~vq 467 (873)
..|.||.|++|-...+++..||+||.+|||||+-|.. ..|..+|.||||+|.+++.+.+..+|.+|+.|.+.++..+.-
T Consensus 501 pGltiWeIENF~P~~~eEafHGkFYeaDcYiVLKT~~ddsG~L~weIfyWiG~eAtLDK~aCsAiHAVnLRN~LgA~CRT 580 (1255)
T KOG0444|consen 501 PGLTIWEIENFYPSIMEEAFHGKFYEADCYIVLKTTRDDSGQLRWEIFYWIGEEATLDKGACSAIHAVNLRNHLGATCRT 580 (1255)
T ss_pred CCceEEeehhhhhHHHHHHhccceecccEEEEEEeecccccccceeEEEEecccccccchhhhHHHhhhhhhhhCchhhh
Confidence 3689999999999999999999999999999999984 457789999999999999999999999999999999999999
Q ss_pred EEeeccCCcHHHHhhcCc-EEEEecC-cccccceeeeecccccccccccceEEEEEEecCCCceEEEEeccCCCCcCCCC
Q 002853 468 AQVHQDMEPVQFFLIFQS-LIVFKGG-LSTQYKKFIVEEGIVDETYDEKKMALFCIQGTSPCNMQAFQVDRVSTCLNSSY 545 (873)
Q Consensus 468 ~Rv~QGkEp~~Fl~lF~~-~iI~kGg-~~~~~~~~~~~~~~~~~~~~~~~~~Lf~V~g~~~~~~~avqV~~~~ssLnS~d 545 (873)
+|+.||.|+.+||++|+. +++..|| +.+||... |. ...-+|||+|.+.+ .++..--|++..+||.+++
T Consensus 581 vREEmgDEsEeFL~lF~~ei~YIEGGrTasGFYT~--E~-------~~h~TRlYrv~~~g-~~i~lEPVpl~~tSLDPRf 650 (1255)
T KOG0444|consen 581 VREEMGDESEEFLTLFGEEIVYIEGGRTASGFYTT--EK-------PAHLTRLYRVGVNG-TAIELEPVPLSVTSLDPRF 650 (1255)
T ss_pred hHHhhCccHHHHHHHhcceeEEEecCceecceeee--cc-------hHHhhhhheecccc-ceeEeeccCccccccCcce
Confidence 999999999999999997 7778899 67887432 11 11347999998754 3566666778889999999
Q ss_pred eEEEEcCCeEEEEECCCCCHHHHHHHHHHHHHhCC-----CCceEEeecCCCchhhhhhcCCCCCCCcccccc----C-C
Q 002853 546 CYILQNGASVFTWIGNLSSSRDHDLLDRMVELINP-----TWQPISVREGSEPEVFWNALGGKSEYPREKEIK----G-F 615 (873)
Q Consensus 546 ~fIL~~~~~vyvW~G~~ss~~e~~~a~~~a~~l~~-----~~~~~~v~EG~E~~~FW~~LGg~~~y~~~~~~~----~-~ 615 (873)
||+|+.|.+||+|.|-.|.-.--..|+.+|+.|.. ..+|..+.+|.|+++||.+|||.++-+...... + .
T Consensus 651 ~FlLD~G~~IyiW~G~~s~~t~~~KARLfAEkinK~eRKgK~EI~l~rQg~e~pEFWqaLgg~p~e~~~~ikeHVPEdf~ 730 (1255)
T KOG0444|consen 651 CFLLDAGETIYIWSGYKSRITVSNKARLFAEKINKRERKGKSEIELCRQGREPPEFWQALGGNPDEPQGAIKEHVPEDFV 730 (1255)
T ss_pred EEEEeCCceEEEEeccchhcccchHHHHHHHHhhhhhccCceeeehhhhcCCCHHHHHHhCCCCcccccchhhcCCcccC
Confidence 99999999999999999998888899999999853 357888999999999999999987654432211 1 3
Q ss_pred CCCCeeEEEEecCCceEEeee-----cccccCCCCCCCEEEEeCCCeEEEEEcCCCCHHHHHHHHHHHHHHHHhcccccC
Q 002853 616 IEDPHLFTCTLTEGDLKVKEI-----YNFTQDDLTTEDILVLDCCREIYVWIGCHSDLNSKQQALNIGQKFLETDILVEG 690 (873)
Q Consensus 616 ~~~prLF~~s~~~G~~~v~Ei-----~~F~Q~DL~~ddv~ILD~~~~IyVWiG~~a~~~ek~~Al~~A~~Yl~~~~~~~~ 690 (873)
+..|+||.+...-|++.+-+| ...+|+-|.+..||||||++.||||+|++++.-.|..|.++.++...+. .
T Consensus 731 p~qpkLYkV~lGmGyLELPQvel~P~~~l~q~lL~sk~VyiLDc~sDiF~W~GkKs~RLvraAa~KL~~EL~~M~----d 806 (1255)
T KOG0444|consen 731 PEQPKLYKVNLGMGYLELPQVELLPKGILKQDLLGSKGVYILDCNSDIFLWIGKKSNRLVRAAAQKLVVELHQMI----D 806 (1255)
T ss_pred CCCcceEEEccccceeecchhhhchhhHHHHHhhcCCeEEEEecCCceEEEecccchHHHHHHHHHHHHHHHhhh----c
Confidence 457999999999999987766 3689999999999999999999999999999999999999999999874 4
Q ss_pred CCCCCcEEEecCCCCChhchhcc-ccCccc
Q 002853 691 LSLETPIYVVTEGHEPPFFTCFF-AWDPLK 719 (873)
Q Consensus 691 ~~~~~pi~~V~eG~EP~~Ft~~F-~Wd~~k 719 (873)
|++...|+.+.+|.|...|+.-| +||...
T Consensus 807 RPdyA~V~R~~EG~E~q~FrsKFagWDev~ 836 (1255)
T KOG0444|consen 807 RPDYAQVYRETEGEESQMFRSKFAGWDEVV 836 (1255)
T ss_pred CcchhheeeccCccHHHHHHHhhCCcceee
Confidence 66667899999999999999999 999754
No 6
>KOG0445 consensus Actin regulatory protein supervillin (gelsolin/villin family) [Cytoskeleton]
Probab=100.00 E-value=3.1e-41 Score=375.68 Aligned_cols=290 Identities=22% Similarity=0.429 Sum_probs=247.4
Q ss_pred ccEEEEEEECCeEeecCCCCCCccccCCeEEEEeeeec---------------CCCCCceEEEEEccCCcCchhhhHHHH
Q 002853 19 LGLEIWCIENLQLVSVPKSSHGKFYTGSAYVILNTALL---------------KSGPPQHDIHYWLGNDVNEEDSTLVSD 83 (873)
Q Consensus 19 ~gl~iWrIe~~~~~~vp~~~~G~Fy~gdsYIVl~t~~~---------------~~g~~~~~i~~W~G~~ss~de~g~AA~ 83 (873)
..+.+|.|-+|....+| +++|+||++|||||.|.|+. ..|+.++.+|||+|++++..|+|+||+
T Consensus 523 ~s~d~W~i~ef~~~~~~-~~~ghF~s~~~YvvrWky~Is~~Vr~~~~g~~~~r~~Gr~rcvyf~WqG~hst~~ekG~~AL 601 (919)
T KOG0445|consen 523 VSVDVWHILEFDYSRLP-QSIGHFHSGDAYVVRWKYMISTAVRSRQKGEHSVRAAGRERCVYFFWQGRHSTVSEKGTSAL 601 (919)
T ss_pred ecccceeeehhhhhhhh-hhhhccccCceEEEEEEEEeehhhhhhhcCccchhhcccceEEEEEEccccCCcccccceee
Confidence 46789999999999999 79999999999999999963 257889999999999999999999999
Q ss_pred HHHHHHHHhCCCceEEEeeccCCcHHHHhhhCCcEEEecCCccCCCCCCCCCccceEEEEeeCcce--EEEEEecCCCCC
Q 002853 84 KALELDAALGSCTVQYREVQGQETEKFLSYFRPCIIPLDGKYSLRSGKSNGETYKISMLTCKGDHV--VRVKEVPFSRSS 161 (873)
Q Consensus 84 ~aveLd~~lgg~~vq~Re~QG~Es~~Fl~~Fk~~ii~~~Gg~~sgf~~~~~~~~~~rL~~vkG~~~--v~~~eV~~s~sS 161 (873)
+++|||+.-| .|+|+.||+||+.||++|.|+|.++.|-.+. -.-|||+|+|... ..+.||.+..|+
T Consensus 602 ~tvElD~e~g---aqvrv~qG~Ep~~Fl~lF~g~m~vhsgr~E~---------~~erlY~v~G~vs~Et~l~Ev~c~~S~ 669 (919)
T KOG0445|consen 602 MTVELDEERG---AQVRVLQGKEPPCFLQLFQGGMVVHSGRREE---------EEERLYCVRGEVSVETNLLEVACHCSS 669 (919)
T ss_pred eeeeeccccC---ceeEeecCCCccHHHHHhcCCeeEEcCchhh---------chhheeeEecccccchhhhHhhhcccc
Confidence 9999999865 7999999999999999999999999875432 2458999999864 578899999999
Q ss_pred ccCCCceeeeCC--CeEEEEeCCCCCHHHHHHHHHHHHHhhccCCC--CceeEEEEcCCccCCCCChhhHHHHcCCCCCC
Q 002853 162 LNHNDVFIVDTA--SKIFLFSGCNSSIQERAKALEVVQYIKEDKHG--GKCGVATVEDGKFVGDSDVGEFWSLFGGYAPI 237 (873)
Q Consensus 162 Lns~DvFILd~~--~~iyvW~G~~S~~~Er~kA~~va~~ik~~~~~--g~~~v~~veeG~~~~~~E~~eFw~~lGg~~~~ 237 (873)
|+|.-++|+... ..+|+|+|+++-.+.|..+.-+|+.|+.+..+ +++.++.||+|+ ++..||++||-+.
T Consensus 670 LRSr~smv~~~~~~~~~~~whg~k~~~ht~~v~v~aa~~~~~q~pgs~~~~~~~Eveegs-----~~~~~~~alGrkd-- 742 (919)
T KOG0445|consen 670 LRSRTSMVVLNVNKALIYLWHGCKAQAHTKEVGVTAANKIKEQCPGSSSKVTIHEVEEGS-----EPLGFWDALGRKD-- 742 (919)
T ss_pred ccccceEEEEeccccceEEEecccCCcchhhHhHHHHHHHHHhCCCccccceeEeecCCC-----Cchhhhhhccccc--
Confidence 999999999876 46999999999999999999999999877653 466788899984 8999999999642
Q ss_pred CCCCCCCCCCCCCCCceeEEEEcCCCC--EE--EEecCCCccccCCCCceEEeeCCCeEEEEecCCCCHHHHHHHHHHHH
Q 002853 238 PRDSPSAFQQQPDTPSTTFFWINLQGK--LC--QIAANSLNKDMLEKDKCYMLDCVNEVFVWTGRNTSITERRISISASE 313 (873)
Q Consensus 238 ~~~~~~~~~~~~~~~~~rLy~v~~~G~--l~--~~e~~~~~q~~L~~~~vyILD~g~eIyVWiG~~as~~erk~Al~~A~ 313 (873)
..+.+|||-...+-. |. .--..||+|++|.+- ||||.|+|+|+|+ ...+|+.||++|.
T Consensus 743 ------------f~~~~RlF~~sS~qa~els~p~rc~~pFsQ~~Ly~a--fLvD~gdelwLW~----w~s~r~~Aleta~ 804 (919)
T KOG0445|consen 743 ------------FNFAPRLFILSSSQATELSYPARCPMPFSQEDLYSA--FLVDNGDELWLWQ----WASDRKSALETAL 804 (919)
T ss_pred ------------ccccceeeeccchhhhhccCcccCCCcccHHHHhhh--eeeccCCeeEeeh----hhhHHHHHHHHHH
Confidence 235789996642211 11 112379999999865 9999999999999 8889999999999
Q ss_pred HHHHhcCCCCCceEEEecCCccchhhhhhcccCCCCC
Q 002853 314 DFLRNQGRTTGTHLTFLTEGLETTVFRSYFDSWPQIA 350 (873)
Q Consensus 314 ~y~~~~~R~p~t~i~~V~eG~Ep~~Fk~~F~~W~~~~ 350 (873)
+|++... .|-.+|..|.||..||.+|++|....
T Consensus 805 ~Ywk~~~----~p~~vV~aGlEPl~Fk~lFp~We~re 837 (919)
T KOG0445|consen 805 QYWKNLK----APSYVVHAGLEPLTFKNLFPSWEHRE 837 (919)
T ss_pred HHHhccC----CCceEEEcCcChhhhhhhCCCceecc
Confidence 9999432 45778999999999999999998754
No 7
>smart00262 GEL Gelsolin homology domain. Gelsolin/severin/villin homology domain. Calcium-binding and actin-binding. Both intra- and extracellular domains.
Probab=99.68 E-value=1.5e-16 Score=143.51 Aligned_cols=88 Identities=44% Similarity=0.748 Sum_probs=82.2
Q ss_pred EEEeeCcceEEEEEecCCCCCccCCCceeeeCCCeEEEEeCCCCCHHHHHHHHHHHHHhhccCCCCceeEEEEcCCccCC
Q 002853 141 MLTCKGDHVVRVKEVPFSRSSLNHNDVFIVDTASKIFLFSGCNSSIQERAKALEVVQYIKEDKHGGKCGVATVEDGKFVG 220 (873)
Q Consensus 141 L~~vkG~~~v~~~eV~~s~sSLns~DvFILd~~~~iyvW~G~~S~~~Er~kA~~va~~ik~~~~~g~~~v~~veeG~~~~ 220 (873)
+++++|...+.+.+||++.++||++||||||+++.||+|+|++|+..||.+|+++|+.+....+.+.++|.+|+||.
T Consensus 2 ~~~~~g~~~~~~~~~~~~~~~L~s~d~fild~~~~iyvW~G~~as~~ek~~A~~~a~~~~~~~~~~~~~i~~v~eg~--- 78 (90)
T smart00262 2 LVRVKGKRNVRVPEVPFSQGSLNSGDCYILDTGSEIYVWVGKKSSQDEKKKAAELAVELDDTLGPGPVQVRVVDEGK--- 78 (90)
T ss_pred eEEEeCCceEEEEEcCCCHHHCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCC---
Confidence 67889998999999999999999999999999999999999999999999999999999877666778999999995
Q ss_pred CCChhhHHHHcCC
Q 002853 221 DSDVGEFWSLFGG 233 (873)
Q Consensus 221 ~~E~~eFw~~lGg 233 (873)
|+.+||.+|||
T Consensus 79 --E~~~F~~~f~~ 89 (90)
T smart00262 79 --EPPEFWSLFGG 89 (90)
T ss_pred --CCHHHHHHhCC
Confidence 88999999987
No 8
>smart00262 GEL Gelsolin homology domain. Gelsolin/severin/villin homology domain. Calcium-binding and actin-binding. Both intra- and extracellular domains.
Probab=99.65 E-value=7e-16 Score=139.15 Aligned_cols=75 Identities=25% Similarity=0.572 Sum_probs=71.4
Q ss_pred CCCccccCCCCceEEeeCCCeEEEEecCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEecCCccchhhhhhcccC
Q 002853 271 NSLNKDMLEKDKCYMLDCVNEVFVWTGRNTSITERRISISASEDFLRNQGRTTGTHLTFLTEGLETTVFRSYFDSW 346 (873)
Q Consensus 271 ~~~~q~~L~~~~vyILD~g~eIyVWiG~~as~~erk~Al~~A~~y~~~~~R~p~t~i~~V~eG~Ep~~Fk~~F~~W 346 (873)
.++.+++|++++|||||++++||||+|++|+..+|..|+.+|+.|++..+ ++.++|.+|.||.||..|+..|.+|
T Consensus 16 ~~~~~~~L~s~d~fild~~~~iyvW~G~~as~~ek~~A~~~a~~~~~~~~-~~~~~i~~v~eg~E~~~F~~~f~~~ 90 (90)
T smart00262 16 VPFSQGSLNSGDCYILDTGSEIYVWVGKKSSQDEKKKAAELAVELDDTLG-PGPVQVRVVDEGKEPPEFWSLFGGW 90 (90)
T ss_pred cCCCHHHCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHhcC-CCCceEEEEeCCCCCHHHHHHhCCC
Confidence 58999999999999999999999999999999999999999999998765 4779999999999999999999988
No 9
>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) []. It can promote nucleation (the assembly of monomers into filaments), as well as sever existing filaments. In addition, this protein binds with high affinity to fibronectin. Plasma gelsolin and cytoplasmic gelsolin are derived from a single gene by alternate initiation sites and differential splicing. Sequence comparisons indicate an evolutionary relationship between gelsolin, villin, fragmin and severin []. Six large repeating segments occur in gelsolin and villin, and 3 similar segments in severin and fragmin. While the multiple repeats have yet to be related to any known function of the actin-severing proteins, the superfamily appears to have evolved from an ancestral sequence of 120 to 130 amino acid residues [].; PDB: 3FG6_F 1RGI_G 2FGH_A 1D0N_B 3EGD_B 2NUP_B 2NUT_B 3EGX_B 1JHW_A 1J72_A ....
Probab=99.38 E-value=5.6e-13 Score=116.01 Aligned_cols=72 Identities=29% Similarity=0.584 Sum_probs=65.4
Q ss_pred EecCCCccccCCCCceEEeeCCCeEEEEecCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEecCCccchhhh
Q 002853 268 IAANSLNKDMLEKDKCYMLDCVNEVFVWTGRNTSITERRISISASEDFLRNQGRTTGTHLTFLTEGLETTVFR 340 (873)
Q Consensus 268 ~e~~~~~q~~L~~~~vyILD~g~eIyVWiG~~as~~erk~Al~~A~~y~~~~~R~p~t~i~~V~eG~Ep~~Fk 340 (873)
.+..++++++|++++||||||+.+||||+|++++..+|..|+..|+++. ...|++.+.+.++.||.||..|.
T Consensus 5 ~~~~~~s~~~L~s~~~yIld~~~~i~vW~G~~~~~~e~~~a~~~a~~~~-~~~~~~~~~~~~~~eg~E~~~F~ 76 (76)
T PF00626_consen 5 PEQVPLSQSSLNSDDCYILDCGYEIFVWVGKKSSPEEKAFAAQLAQELL-SEERPPLPEVIRVEEGKEPAEFL 76 (76)
T ss_dssp EEEESSSGGGEETTSEEEEEESSEEEEEEHTTSHHHHHHHHHHHHHHHH-HHHTTTTSEEEEEETTHHHHHHH
T ss_pred CCcCCCCHHHcCCCCEEEEEeCCCcEEEEeccCCHHHHHHHHHHHHHhh-hhcCCCCCEEEEecCCCCChHHC
Confidence 3456899999999999999999999999999999999999999999999 44566788999999999999983
No 10
>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) []. It can promote nucleation (the assembly of monomers into filaments), as well as sever existing filaments. In addition, this protein binds with high affinity to fibronectin. Plasma gelsolin and cytoplasmic gelsolin are derived from a single gene by alternate initiation sites and differential splicing. Sequence comparisons indicate an evolutionary relationship between gelsolin, villin, fragmin and severin []. Six large repeating segments occur in gelsolin and villin, and 3 similar segments in severin and fragmin. While the multiple repeats have yet to be related to any known function of the actin-severing proteins, the superfamily appears to have evolved from an ancestral sequence of 120 to 130 amino acid residues [].; PDB: 3FG6_F 1RGI_G 2FGH_A 1D0N_B 3EGD_B 2NUP_B 2NUT_B 3EGX_B 1JHW_A 1J72_A ....
Probab=99.34 E-value=1.3e-12 Score=113.74 Aligned_cols=74 Identities=38% Similarity=0.554 Sum_probs=68.2
Q ss_pred EEEEEecCCCCCccCCCceeeeCCCeEEEEeCCCCCHHHHHHHHHHHHHhhccCCCCceeEEEEcCCccCCCCChhhHH
Q 002853 150 VRVKEVPFSRSSLNHNDVFIVDTASKIFLFSGCNSSIQERAKALEVVQYIKEDKHGGKCGVATVEDGKFVGDSDVGEFW 228 (873)
Q Consensus 150 v~~~eV~~s~sSLns~DvFILd~~~~iyvW~G~~S~~~Er~kA~~va~~ik~~~~~g~~~v~~veeG~~~~~~E~~eFw 228 (873)
+++.++++++++|+++||||||++..||+|.|+.|+..||.+|..+|+.|...++.+.+.+..+.+|+ |+..||
T Consensus 3 ~~~~~~~~s~~~L~s~~~yIld~~~~i~vW~G~~~~~~e~~~a~~~a~~~~~~~~~~~~~~~~~~eg~-----E~~~F~ 76 (76)
T PF00626_consen 3 VRPEQVPLSQSSLNSDDCYILDCGYEIFVWVGKKSSPEEKAFAAQLAQELLSEERPPLPEVIRVEEGK-----EPAEFL 76 (76)
T ss_dssp EEEEEESSSGGGEETTSEEEEEESSEEEEEEHTTSHHHHHHHHHHHHHHHHHHHTTTTSEEEEEETTH-----HHHHHH
T ss_pred ccCCcCCCCHHHcCCCCEEEEEeCCCcEEEEeccCCHHHHHHHHHHHHHhhhhcCCCCCEEEEecCCC-----CChHHC
Confidence 56788999999999999999999999999999999999999999999999855567789999999996 899998
No 11
>PTZ00395 Sec24-related protein; Provisional
Probab=94.81 E-value=0.089 Score=66.61 Aligned_cols=34 Identities=12% Similarity=0.291 Sum_probs=29.8
Q ss_pred CCCccccCCCCceEEeeCCCeEEEEecCCCCHHH
Q 002853 271 NSLNKDMLEKDKCYMLDCVNEVFVWTGRNTSITE 304 (873)
Q Consensus 271 ~~~~q~~L~~~~vyILD~g~eIyVWiG~~as~~e 304 (873)
.+++.+-|.++.|||||+|..||||+|+.++..-
T Consensus 1434 LrLS~ErLesdGIYLLDNGe~IyLWVG~~V~PqL 1467 (1560)
T PTZ00395 1434 IPSSAEKIYSNGIYLLDACTHFYLYFGFHSDANF 1467 (1560)
T ss_pred ccchHHHhcCCcEEEEECCCEEEEEECCCCCHHH
Confidence 4578889999999999999999999999987543
No 12
>PTZ00395 Sec24-related protein; Provisional
Probab=94.28 E-value=0.095 Score=66.34 Aligned_cols=115 Identities=18% Similarity=0.336 Sum_probs=66.2
Q ss_pred CCCeeEEEEec-----------CCceEEeeecccccCCCCCCCEEEEeCCCeEEEEEcCCCCHHHHHHHHHH--------
Q 002853 617 EDPHLFTCTLT-----------EGDLKVKEIYNFTQDDLTTEDILVLDCCREIYVWIGCHSDLNSKQQALNI-------- 677 (873)
Q Consensus 617 ~~prLF~~s~~-----------~G~~~v~Ei~~F~Q~DL~~ddv~ILD~~~~IyVWiG~~a~~~ek~~Al~~-------- 677 (873)
-.||||.+-+- .+.+.+-.-.+.+-+-|..+.|||||++..||+|||+.+++.--+..+-.
T Consensus 1403 LYPRLYpLHdL~~e~e~d~~d~d~~ivLPp~LrLS~ErLesdGIYLLDNGe~IyLWVG~~V~PqLLqDLFGv~~~~~~~~ 1482 (1560)
T PTZ00395 1403 VYPVMYVIHIKGKTNEIDSMDVDDDLFIPKTIPSSAEKIYSNGIYLLDACTHFYLYFGFHSDANFAKEIVGDIPTEKNAH 1482 (1560)
T ss_pred hcCceEEcccccccccCCccCCCCccccCCcccchHHHhcCCcEEEEECCCEEEEEECCCCCHHHHHHHcCCCccccccc
Confidence 36999987541 12222222246777889999999999999999999999997654333210
Q ss_pred ------------HHHHHHhcccccCCCCCCcEEEecCC--CCChhchhccccCcccccccCCcHHHHHHHhc
Q 002853 678 ------------GQKFLETDILVEGLSLETPIYVVTEG--HEPPFFTCFFAWDPLKAKMHGNSFERKLAILK 735 (873)
Q Consensus 678 ------------A~~Yl~~~~~~~~~~~~~pi~~V~eG--~EP~~Ft~~F~Wd~~k~~~~~~s~~~k~~~~~ 735 (873)
....|+.-.......+..|+++|.+| .|+.+|. ++. .++. ...-||..=|-.|.
T Consensus 1483 eLPelDT~iS~RVrnII~~LR~~r~~~~Y~pL~IVRqgDp~E~~F~s-~LV--EDRs-~g~~SYvDFLc~LH 1550 (1560)
T PTZ00395 1483 ELNLTDTPNAQKVQRIIKNLSRIHHFNKYVPLVMVAPKSNEEEHLIS-LCV--EDKA-DKEYSYVNFLCFIH 1550 (1560)
T ss_pred cccCCCCHHHHHHHHHHHHHHHhccCCCcceEEEEeCCCchHHHHHH-hCe--ecCC-CCCCCHHHHHHHHH
Confidence 01111111000111245688888766 4553333 333 2222 23578888776664
No 13
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.20 E-value=0.23 Score=60.33 Aligned_cols=87 Identities=22% Similarity=0.303 Sum_probs=60.7
Q ss_pred CCCeeEEEEecC--CceEEee--ecccccCCCCCCCEEEEeCCCeEEEEEcCCCCHHHHH--------------------
Q 002853 617 EDPHLFTCTLTE--GDLKVKE--IYNFTQDDLTTEDILVLDCCREIYVWIGCHSDLNSKQ-------------------- 672 (873)
Q Consensus 617 ~~prLF~~s~~~--G~~~v~E--i~~F~Q~DL~~ddv~ILD~~~~IyVWiG~~a~~~ek~-------------------- 672 (873)
..|||+.+.+-. -.+.... -...+-+-|..++|||||++..+|+|||..++....+
T Consensus 857 ~YPrl~p~hdl~i~dtl~~~~p~~VraS~e~l~negiYll~nG~~~ylwvg~sv~~~llQ~lf~V~s~~~i~s~~~~Lpe 936 (1007)
T KOG1984|consen 857 FYPRLLPFHDLDIEDTLEFVLPKAVRASSEFLSNEGIYLLDNGQKIYLWVGESVDPDLLQDLFSVSSFEQIDSQSGVLPE 936 (1007)
T ss_pred hccceeeeeccccccccccccccceecchhhccCCceEEEecCcEEEEEecCCCCHHHHHHHhcCccccccccccccccc
Confidence 469998876532 1111111 1367788899999999999999999999999854322
Q ss_pred ------HHHHHHHHHHHhcccccCCCCCCcEEEecCCCCChh
Q 002853 673 ------QALNIGQKFLETDILVEGLSLETPIYVVTEGHEPPF 708 (873)
Q Consensus 673 ------~Al~~A~~Yl~~~~~~~~~~~~~pi~~V~eG~EP~~ 708 (873)
..+.-+..+|++ -|+...|+.++++|.++..
T Consensus 937 ~dn~lS~k~r~~i~~i~~-----~r~~~l~v~~~k~g~~~~~ 973 (1007)
T KOG1984|consen 937 LDNPLSRKVRNVISLIRR-----QRSSELPVVLVKQGLDGSE 973 (1007)
T ss_pred cCcHHHHHHHHHHHHHHh-----ccccccccEEEecCCCchh
Confidence 223334456654 2466789999999999886
No 14
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
Probab=94.19 E-value=0.13 Score=61.50 Aligned_cols=116 Identities=19% Similarity=0.257 Sum_probs=74.0
Q ss_pred CCeeEEEEe---cCC-----ceEEeeecccccCCCCCCCEEEEeCCCeEEEEEcCCCCHHHHHHHHHH------------
Q 002853 618 DPHLFTCTL---TEG-----DLKVKEIYNFTQDDLTTEDILVLDCCREIYVWIGCHSDLNSKQQALNI------------ 677 (873)
Q Consensus 618 ~prLF~~s~---~~G-----~~~v~Ei~~F~Q~DL~~ddv~ILD~~~~IyVWiG~~a~~~ek~~Al~~------------ 677 (873)
.|+||.+.+ +.| .+..-+--|.+-+-|.+..+||||+|.+||+|+|+.+++......+.+
T Consensus 709 YP~lyalHdm~~e~~l~~~~~~~~~~piNaT~s~le~~GlYLidtg~~iflw~g~d~~p~Ll~dlf~~~~~~~I~~~k~~ 788 (861)
T COG5028 709 YPTLYALHDMPIEAGLPDEGLLVLPSPINATSSLLESGGLYLIDTGQKIFLWFGKDAVPSLLQDLFGVDSLSDIPSGKFT 788 (861)
T ss_pred ccceeeecccccccCCCcccccccccchhhhHHHHhcCCeEEEEcCCEEEEEecCCCCHHHHHHhcCcchhhhccccccc
Confidence 588887752 222 222222237888889999999999999999999999998666555443
Q ss_pred -----------HHHHHHhcccccCCCCCCcEEEecCCCCChhchhcc--ccCcccccccCCcHHHHHHHhcC
Q 002853 678 -----------GQKFLETDILVEGLSLETPIYVVTEGHEPPFFTCFF--AWDPLKAKMHGNSFERKLAILKG 736 (873)
Q Consensus 678 -----------A~~Yl~~~~~~~~~~~~~pi~~V~eG~EP~~Ft~~F--~Wd~~k~~~~~~s~~~k~~~~~~ 736 (873)
+.+-|..-.. ......-|+++|++|.+|. .+..| .-=.++.. ..-||.+=|.+|+.
T Consensus 789 ~p~~~n~~n~~v~~iI~~lrs-~~~~~tl~lvlVR~~~d~s-~~~~~~s~lVEDk~~-n~~SY~~yL~~lh~ 857 (861)
T COG5028 789 LPPTGNEFNERVRNIIGELRS-VNDDSTLPLVLVRGGGDPS-LRLWFFSTLVEDKTL-NIPSYLDYLQILHE 857 (861)
T ss_pred cCCcCCHHHHHHHHHHHHHHh-hCCCCccceEEEecCCCcc-hhhheehheeccccc-CCccHHHHHHHHHH
Confidence 2222322111 0123445799999999998 33322 23334443 36788887777753
No 15
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
Probab=92.84 E-value=0.16 Score=60.89 Aligned_cols=73 Identities=15% Similarity=0.322 Sum_probs=50.1
Q ss_pred EEEEecCCCccccCCCCceEEeeCCCeEEEEecCCCCHHHHHHHHHH-----------------------HHHHH---Hh
Q 002853 265 LCQIAANSLNKDMLEKDKCYMLDCVNEVFVWTGRNTSITERRISISA-----------------------SEDFL---RN 318 (873)
Q Consensus 265 l~~~e~~~~~q~~L~~~~vyILD~g~eIyVWiG~~as~~erk~Al~~-----------------------A~~y~---~~ 318 (873)
++....-+++.+.|.+..+|+||+|.+||+|+|+++.+.-....+.. +...| ++
T Consensus 730 ~~~~~piNaT~s~le~~GlYLidtg~~iflw~g~d~~p~Ll~dlf~~~~~~~I~~~k~~~p~~~n~~n~~v~~iI~~lrs 809 (861)
T COG5028 730 LVLPSPINATSSLLESGGLYLIDTGQKIFLWFGKDAVPSLLQDLFGVDSLSDIPSGKFTLPPTGNEFNERVRNIIGELRS 809 (861)
T ss_pred cccccchhhhHHHHhcCCeEEEEcCCEEEEEecCCCCHHHHHHhcCcchhhhccccccccCCcCCHHHHHHHHHHHHHHh
Confidence 33333345888999999999999999999999999876544433322 12222 22
Q ss_pred cCCCCCceEEEecCCccch
Q 002853 319 QGRTTGTHLTFLTEGLETT 337 (873)
Q Consensus 319 ~~R~p~t~i~~V~eG~Ep~ 337 (873)
..+...-++++|.+|.+|.
T Consensus 810 ~~~~~tl~lvlVR~~~d~s 828 (861)
T COG5028 810 VNDDSTLPLVLVRGGGDPS 828 (861)
T ss_pred hCCCCccceEEEecCCCcc
Confidence 2332345688899999998
No 16
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.56 E-value=0.47 Score=57.76 Aligned_cols=67 Identities=15% Similarity=0.396 Sum_probs=49.5
Q ss_pred CCCccccCCCCceEEeeCCCeEEEEecCCCCHHHHH--------------------------HHHHHHHHHHHhcCCCCC
Q 002853 271 NSLNKDMLEKDKCYMLDCVNEVFVWTGRNTSITERR--------------------------ISISASEDFLRNQGRTTG 324 (873)
Q Consensus 271 ~~~~q~~L~~~~vyILD~g~eIyVWiG~~as~~erk--------------------------~Al~~A~~y~~~~~R~p~ 324 (873)
.+++.+-|...+|||||+|..||+|+|..++..-.. ..++.+..++++ -|...
T Consensus 881 VraS~e~l~negiYll~nG~~~ylwvg~sv~~~llQ~lf~V~s~~~i~s~~~~Lpe~dn~lS~k~r~~i~~i~~-~r~~~ 959 (1007)
T KOG1984|consen 881 VRASSEFLSNEGIYLLDNGQKIYLWVGESVDPDLLQDLFSVSSFEQIDSQSGVLPELDNPLSRKVRNVISLIRR-QRSSE 959 (1007)
T ss_pred eecchhhccCCceEEEecCcEEEEEecCCCCHHHHHHHhcCccccccccccccccccCcHHHHHHHHHHHHHHh-ccccc
Confidence 468889999999999999999999999987643322 223334455555 45456
Q ss_pred ceEEEecCCccchh
Q 002853 325 THLTFLTEGLETTV 338 (873)
Q Consensus 325 t~i~~V~eG~Ep~~ 338 (873)
.+++++.+|.++.+
T Consensus 960 l~v~~~k~g~~~~~ 973 (1007)
T KOG1984|consen 960 LPVVLVKQGLDGSE 973 (1007)
T ss_pred cccEEEecCCCchh
Confidence 78888888887765
No 17
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.64 E-value=0.24 Score=59.94 Aligned_cols=31 Identities=26% Similarity=0.670 Sum_probs=27.9
Q ss_pred CCCccccCCCCceEEeeCCCeEEEEecCCCC
Q 002853 271 NSLNKDMLEKDKCYMLDCVNEVFVWTGRNTS 301 (873)
Q Consensus 271 ~~~~q~~L~~~~vyILD~g~eIyVWiG~~as 301 (873)
-+++-+.|+...+||+|||.++|+|+|++|.
T Consensus 763 L~ltae~l~~~GlyL~D~g~~lfl~vg~~a~ 793 (887)
T KOG1985|consen 763 LNLTAELLSRRGLYLMDTGTTLFLWVGSNAD 793 (887)
T ss_pred cchHHHHhccCceEEEecCcEEEEEEcCCCC
Confidence 4577789999999999999999999999874
No 18
>PLN00162 transport protein sec23; Provisional
Probab=80.05 E-value=6.3 Score=49.37 Aligned_cols=81 Identities=14% Similarity=0.122 Sum_probs=51.2
Q ss_pred ceeEEEEcCCCCEEEEecCCCccccCCCCceEEeeCCCeEEEEecCCC------------CHHHHHHHHHHHHHHHHh--
Q 002853 253 STTFFWINLQGKLCQIAANSLNKDMLEKDKCYMLDCVNEVFVWTGRNT------------SITERRISISASEDFLRN-- 318 (873)
Q Consensus 253 ~~rLy~v~~~G~l~~~e~~~~~q~~L~~~~vyILD~g~eIyVWiG~~a------------s~~erk~Al~~A~~y~~~-- 318 (873)
.|+||.+.-++...+ ..++-+-|.+|.+||||++..|+||.|... ..+..+..++..++.++.
T Consensus 620 ~P~L~sy~~~~~P~p---v~Ld~~si~~d~ilLLD~~f~vvi~~G~~ia~w~~~~~~~~~~~~~~~~~l~~p~~~a~~~~ 696 (761)
T PLN00162 620 QPTLISYSFNGPPEP---VLLDVASIAADRILLLDSYFSVVIFHGSTIAQWRKAGYHNQPEHEAFAQLLEAPQADAQAII 696 (761)
T ss_pred CCeEEEecCCCCCcc---eecchhhccCCceEEEeCCCEEEEEecCcccchhhcCCCCCcchhhHHHHHHhHHHHHHHHH
Confidence 467886653343222 347777889999999999999999999532 112234444444444433
Q ss_pred cCCCCCceEEEecCCccc
Q 002853 319 QGRTTGTHLTFLTEGLET 336 (873)
Q Consensus 319 ~~R~p~t~i~~V~eG~Ep 336 (873)
.+|-|.+.++...||+--
T Consensus 697 ~~Rfp~Pr~i~~~~~~Sq 714 (761)
T PLN00162 697 KERFPVPRLVVCDQHGSQ 714 (761)
T ss_pred hcCCCCCeEEEeCCCCcH
Confidence 257677777766666643
No 19
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.53 E-value=4.1 Score=49.78 Aligned_cols=51 Identities=20% Similarity=0.406 Sum_probs=38.2
Q ss_pred CCeeEEEEec---CCceEEe------eecccccCCCCCCCEEEEeCCCeEEEEEcCCCCH
Q 002853 618 DPHLFTCTLT---EGDLKVK------EIYNFTQDDLTTEDILVLDCCREIYVWIGCHSDL 668 (873)
Q Consensus 618 ~prLF~~s~~---~G~~~v~------Ei~~F~Q~DL~~ddv~ILD~~~~IyVWiG~~a~~ 668 (873)
.|.||++..- -|...-+ ..-+.+-+-|....+||+|||.++|||+|+.|++
T Consensus 735 YP~Lysl~~l~~ea~~~~~d~~~~~p~~L~ltae~l~~~GlyL~D~g~~lfl~vg~~a~P 794 (887)
T KOG1985|consen 735 YPTLYSLHDLDDEAGLPIHDQTVVLPPPLNLTAELLSRRGLYLMDTGTTLFLWVGSNADP 794 (887)
T ss_pred cccceeccccccccCcccccccccCCCccchHHHHhccCceEEEecCcEEEEEEcCCCCc
Confidence 5889987532 2322212 2347788889999999999999999999999973
No 20
>PLN00162 transport protein sec23; Provisional
Probab=64.44 E-value=19 Score=45.29 Aligned_cols=44 Identities=18% Similarity=0.366 Sum_probs=33.9
Q ss_pred CCeeEEEEecCCceEEeeecccccCCCCCCCEEEEeCCCeEEEEEcCC
Q 002853 618 DPHLFTCTLTEGDLKVKEIYNFTQDDLTTEDILVLDCCREIYVWIGCH 665 (873)
Q Consensus 618 ~prLF~~s~~~G~~~v~Ei~~F~Q~DL~~ddv~ILD~~~~IyVWiG~~ 665 (873)
.|+||..++.. - -+-...+.+.|.+|.|+|||++..|+||.|..
T Consensus 620 ~P~L~sy~~~~-~---P~pv~Ld~~si~~d~ilLLD~~f~vvi~~G~~ 663 (761)
T PLN00162 620 QPTLISYSFNG-P---PEPVLLDVASIAADRILLLDSYFSVVIFHGST 663 (761)
T ss_pred CCeEEEecCCC-C---CcceecchhhccCCceEEEeCCCEEEEEecCc
Confidence 69999887542 1 11235677788899999999999999999953
No 21
>KOG3655 consensus Drebrins and related actin binding proteins [Cytoskeleton]
Probab=57.40 E-value=20 Score=41.50 Aligned_cols=108 Identities=17% Similarity=0.226 Sum_probs=72.3
Q ss_pred CCcccccCCccccEEEEEEECC----eEeecCCCCCCcc-------ccCC-eEEEEeeeecCCCCCceEEEEEccCCcCc
Q 002853 8 IDSAFEGAGKKLGLEIWCIENL----QLVSVPKSSHGKF-------YTGS-AYVILNTALLKSGPPQHDIHYWLGNDVNE 75 (873)
Q Consensus 8 ~d~~~~g~G~~~gl~iWrIe~~----~~~~vp~~~~G~F-------y~gd-sYIVl~t~~~~~g~~~~~i~~W~G~~ss~ 75 (873)
++.+|.++-....-..|-|=++ ....+...-+|.| -+|- .|+..-+....++...++|-.|+|..++.
T Consensus 13 i~aaY~~v~~d~~dt~WaiF~Yeg~s~~~~~~~s~~~~~~e~~~df~~~kv~yg~~rv~D~~s~l~KfvLI~W~GE~vp~ 92 (484)
T KOG3655|consen 13 IRAAYERVVDDSSDTDWALFTYEGNSNDLKVAGSGEGGLEEFLGDFDSGKVMYGFCRVKDPMSGLPKFVLINWIGEGVPV 92 (484)
T ss_pred HHHHHHHhhccCCCceeEEEeecCCccceeeeccccccHHHHhhhcccCceeEEEEEecCcccCCcceEEEEecCCccHH
Confidence 4455665555555678888544 3333444444443 2121 35555444444567789999999999999
Q ss_pred hhhhHHHHHHHHHHHHhCCCceEE--EeeccCCcHHHHhhhC
Q 002853 76 EDSTLVSDKALELDAALGSCTVQY--REVQGQETEKFLSYFR 115 (873)
Q Consensus 76 de~g~AA~~aveLd~~lgg~~vq~--Re~QG~Es~~Fl~~Fk 115 (873)
-.++.+|.++..+.+.|+|-.|++ |...--+.+.|+.-..
T Consensus 93 ~Rka~~ath~a~v~~~lkg~hV~i~Ar~e~Dld~d~i~~~ls 134 (484)
T KOG3655|consen 93 LRKAKCATHKALVKNFLKGFHVEINARSEEDLDEDAIREKLS 134 (484)
T ss_pred HhhhhhcchHHHHHHHhhcceEEEeccchhhcCHHHHHHHHH
Confidence 999999999999999999988876 4455555666665554
No 22
>PF00241 Cofilin_ADF: Cofilin/tropomyosin-type actin-binding protein; InterPro: IPR002108 The actin-depolymerising factor homology (ADF-H) domain is an ~150-amino acid motif that is present in three phylogenetically distinct classes of eukaryotic actin-binding proteins [, , ]: ADF/cofilins, which include ADF, cofilin, destrin, actophorin, coactosin, depactin and glia maturation factors (GMFs) beta and gamma. ADF/cofilins are small actin-binding proteins composed of a single ADF-H domain. They bind both actin-monomers and filaments and promote rapid filament turnover in cells by depolymerising/fragmenting actin filaments. ADF/cofilins bind ADP-actin with higher affinity than ATP-actin and inhibit the spontaneous nucleotide exchange on actin monomers Twinfilins, which are actin monomer-binding proteins that are composed of two ADF-H domains Abp1/Drebrins, which are relatively large proteins composed of an N-terminal ADF-H domain followed by a variable region and a C-terminal SH3 domain. Abp1/Drebrins interact only with actin filaments and do not promote filament depolymerisation or fragmentation Although these proteins are biochemically distinct and play different roles in actin dynamics, they all appear to use the ADF-H domain for their interactions with actin. The ADF-H domain consists of a six-stranded mixed beta-sheet in which the four central strands (beta2-beta5) are anti-parallel and the two edge strands (beta1 and beta6) run parallel with the neighbouring strands. The sheet is surrounded by two alpha-helices on each side [, , ].; GO: 0003779 actin binding, 0005622 intracellular; PDB: 1AK6_A 1AK7_A 1V6F_A 2L72_A 1CFY_A 1QPV_A 1COF_A 1TVJ_A 1X67_A 3L50_A ....
Probab=46.88 E-value=90 Score=29.50 Aligned_cols=54 Identities=15% Similarity=0.273 Sum_probs=36.2
Q ss_pred ceeeeccEEEEEeecC----CCCcceEEEEEEcCCCCCHHHHHHHHHHHHHHHHhccC
Q 002853 410 MKLFSGDCYIVKYTYP----GNGRDENVIYAWFGHESMTEDRAAAISHMSAIVDSTRG 463 (873)
Q Consensus 410 G~FysgdcYIvl~ty~----~~~~~~~~iy~W~G~~ss~~e~~~aa~~a~~l~~~~~~ 463 (873)
.+|=..+|.-++|.|. +..+...++.+|.+..++..++..-+..-..+...+++
T Consensus 47 ~~l~~~~p~y~~~~~~~~~~~~~~~k~vfI~w~P~~~~vk~km~yas~k~~l~~~l~~ 104 (127)
T PF00241_consen 47 SHLPDDEPRYILYRFEYTHKGSRRSKLVFIYWCPDNAPVKEKMLYASSKASLKKKLGG 104 (127)
T ss_dssp HCSCTTSEEEEEEEEEEEETTSEEEEEEEEEEESTTS-HHHHHHHHHHHHHHHHHCTT
T ss_pred HhcccCCcEEEEEEeeecccCCCCceEEEEEEecCCccHHHhhhhHHhHHHHHHHhCC
Confidence 3455667555555553 44456777789999999999987666656666677766
No 23
>KOG3655 consensus Drebrins and related actin binding proteins [Cytoskeleton]
Probab=40.01 E-value=58 Score=37.95 Aligned_cols=60 Identities=17% Similarity=0.235 Sum_probs=50.3
Q ss_pred CCCcceEEEEEEcCCCCCHHHHHHHHHHHHHHHHhccCCceE--EEeeccCCcHHHHhhcCc
Q 002853 426 GNGRDENVIYAWFGHESMTEDRAAAISHMSAIVDSTRGEAVM--AQVHQDMEPVQFFLIFQS 485 (873)
Q Consensus 426 ~~~~~~~~iy~W~G~~ss~~e~~~aa~~a~~l~~~~~~~~vq--~Rv~QGkEp~~Fl~lF~~ 485 (873)
..+...++|-.|+|.....--++.++.++..+.+.|+|-.|+ +|....=++..|+.-...
T Consensus 74 ~s~l~KfvLI~W~GE~vp~~Rka~~ath~a~v~~~lkg~hV~i~Ar~e~Dld~d~i~~~ls~ 135 (484)
T KOG3655|consen 74 MSGLPKFVLINWIGEGVPVLRKAKCATHKALVKNFLKGFHVEINARSEEDLDEDAIREKLSK 135 (484)
T ss_pred ccCCcceEEEEecCCccHHHhhhhhcchHHHHHHHhhcceEEEeccchhhcCHHHHHHHHHh
Confidence 456789999999999999888899999999999999987764 588888888888877654
No 24
>PF00241 Cofilin_ADF: Cofilin/tropomyosin-type actin-binding protein; InterPro: IPR002108 The actin-depolymerising factor homology (ADF-H) domain is an ~150-amino acid motif that is present in three phylogenetically distinct classes of eukaryotic actin-binding proteins [, , ]: ADF/cofilins, which include ADF, cofilin, destrin, actophorin, coactosin, depactin and glia maturation factors (GMFs) beta and gamma. ADF/cofilins are small actin-binding proteins composed of a single ADF-H domain. They bind both actin-monomers and filaments and promote rapid filament turnover in cells by depolymerising/fragmenting actin filaments. ADF/cofilins bind ADP-actin with higher affinity than ATP-actin and inhibit the spontaneous nucleotide exchange on actin monomers Twinfilins, which are actin monomer-binding proteins that are composed of two ADF-H domains Abp1/Drebrins, which are relatively large proteins composed of an N-terminal ADF-H domain followed by a variable region and a C-terminal SH3 domain. Abp1/Drebrins interact only with actin filaments and do not promote filament depolymerisation or fragmentation Although these proteins are biochemically distinct and play different roles in actin dynamics, they all appear to use the ADF-H domain for their interactions with actin. The ADF-H domain consists of a six-stranded mixed beta-sheet in which the four central strands (beta2-beta5) are anti-parallel and the two edge strands (beta1 and beta6) run parallel with the neighbouring strands. The sheet is surrounded by two alpha-helices on each side [, , ].; GO: 0003779 actin binding, 0005622 intracellular; PDB: 1AK6_A 1AK7_A 1V6F_A 2L72_A 1CFY_A 1QPV_A 1COF_A 1TVJ_A 1X67_A 3L50_A ....
Probab=36.59 E-value=99 Score=29.19 Aligned_cols=88 Identities=17% Similarity=0.267 Sum_probs=53.7
Q ss_pred ccEEEEEEECC-eEeecCCCC--C-------CccccCC-eEEEEee-eecCCCC-CceEEEEEccCCcCchhhhHHHHHH
Q 002853 19 LGLEIWCIENL-QLVSVPKSS--H-------GKFYTGS-AYVILNT-ALLKSGP-PQHDIHYWLGNDVNEEDSTLVSDKA 85 (873)
Q Consensus 19 ~gl~iWrIe~~-~~~~vp~~~--~-------G~Fy~gd-sYIVl~t-~~~~~g~-~~~~i~~W~G~~ss~de~g~AA~~a 85 (873)
...-+|+|++. ..+.|.+.- . ..|=..+ +|+++.- +...++. ....+.+|++..++.-++..-|..-
T Consensus 16 ~~~i~~~i~~~~~~i~v~~~g~~~~~~~el~~~l~~~~p~y~~~~~~~~~~~~~~~k~vfI~w~P~~~~vk~km~yas~k 95 (127)
T PF00241_consen 16 TRWIIFKIDDEKEEIVVEKSGSEGGSFDELLSHLPDDEPRYILYRFEYTHKGSRRSKLVFIYWCPDNAPVKEKMLYASSK 95 (127)
T ss_dssp CSEEEEEEETTSTEEEEEEEEEESSHHHHHHHCSCTTSEEEEEEEEEEEETTSEEEEEEEEEEESTTS-HHHHHHHHHHH
T ss_pred ceEEEEEEeCCCcEEEEEeccCCCCCHHHHHHhcccCCcEEEEEEeeecccCCCCceEEEEEEecCCccHHHhhhhHHhH
Confidence 46778999887 333333321 1 1244444 6666532 2223322 2345668999999999999888888
Q ss_pred HHHHHHhCCCceEEEeeccCCcHH
Q 002853 86 LELDAALGSCTVQYREVQGQETEK 109 (873)
Q Consensus 86 veLd~~lgg~~vq~Re~QG~Es~~ 109 (873)
..|-..|++ -+.++|..+...
T Consensus 96 ~~l~~~l~~---~~~~~~~~d~~d 116 (127)
T PF00241_consen 96 ASLKKKLGG---IHIEIQASDPDD 116 (127)
T ss_dssp HHHHHHCTT---EEEEEEESSGGG
T ss_pred HHHHHHhCC---ceEEEEECChHH
Confidence 888899987 333566665544
No 25
>smart00102 ADF Actin depolymerisation factor/cofilin -like domains. Severs actin filaments and binds to actin monomers.
Probab=34.83 E-value=1.4e+02 Score=28.36 Aligned_cols=88 Identities=17% Similarity=0.252 Sum_probs=53.3
Q ss_pred cccEEEEEEECC-eEeecCCC-C----C----CccccCCe-EEEEeeeec-CC-CCCceEEEEEccCCcCchhhhHHHHH
Q 002853 18 KLGLEIWCIENL-QLVSVPKS-S----H----GKFYTGSA-YVILNTALL-KS-GPPQHDIHYWLGNDVNEEDSTLVSDK 84 (873)
Q Consensus 18 ~~gl~iWrIe~~-~~~~vp~~-~----~----G~Fy~gds-YIVl~t~~~-~~-g~~~~~i~~W~G~~ss~de~g~AA~~ 84 (873)
+...-||+|... +.+.|.+. . + ..|-..+| |+|+.--.. ++ ......+.+|++..++.-++...|..
T Consensus 15 ~~~~vi~~i~~~~~~i~v~~~~~~~~~~~el~~~l~~~~~ry~~~~~~~~~~~~~~~k~vfI~w~P~~a~~~~km~yas~ 94 (127)
T smart00102 15 KHSAIIFKIDKDNEEIVVEEVGSTEDSYDEFVEELPEDECRYALYDYKFTTEESKKSKIVFIFWSPDGAPVKSKMLYASS 94 (127)
T ss_pred CceEEEEEEecCCCEEEEEecCCCCCCHHHHHHhCCccCceEEEEEeecccCCCccccEEEEEECCCCCCHHHHHHHHHH
Confidence 357889999864 22223222 1 1 12434444 776543211 12 23346777999999999999988888
Q ss_pred HHHHHHHhCCCceEEEeeccCCcH
Q 002853 85 ALELDAALGSCTVQYREVQGQETE 108 (873)
Q Consensus 85 aveLd~~lgg~~vq~Re~QG~Es~ 108 (873)
-..|...|+|-.+ .+|..+..
T Consensus 95 k~~l~~~l~~~~~---~i~~~~~~ 115 (127)
T smart00102 95 KDTLKKELGGIQV---EVQATDED 115 (127)
T ss_pred HHHHHHHcCCceE---EEEECChh
Confidence 8888888987332 34444443
No 26
>smart00102 ADF Actin depolymerisation factor/cofilin -like domains. Severs actin filaments and binds to actin monomers.
Probab=29.63 E-value=1.5e+02 Score=28.12 Aligned_cols=54 Identities=15% Similarity=0.260 Sum_probs=36.7
Q ss_pred ceeeeccEEEEEeecC----CCCcceEEEEEEcCCCCCHHHHHHHHHHHHHHHHhccC
Q 002853 410 MKLFSGDCYIVKYTYP----GNGRDENVIYAWFGHESMTEDRAAAISHMSAIVDSTRG 463 (873)
Q Consensus 410 G~FysgdcYIvl~ty~----~~~~~~~~iy~W~G~~ss~~e~~~aa~~a~~l~~~~~~ 463 (873)
..|-..+|--++|.|. +..+...++.+|.|..++..++..-+.....+...++|
T Consensus 47 ~~l~~~~~ry~~~~~~~~~~~~~~~k~vfI~w~P~~a~~~~km~yas~k~~l~~~l~~ 104 (127)
T smart00102 47 EELPEDECRYALYDYKFTTEESKKSKIVFIFWSPDGAPVKSKMLYASSKDTLKKELGG 104 (127)
T ss_pred HhCCccCceEEEEEeecccCCCccccEEEEEECCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 3455566644455663 23455678889999999999987766666666666665
No 27
>cd00013 ADF Actin depolymerisation factor/cofilin -like domains; present in a family of essential eukaryotic actin regulatory proteins; these proteins enhance the turnover rate of actin and interact with actin monomers as well as actin filaments.
Probab=28.55 E-value=2e+02 Score=27.28 Aligned_cols=86 Identities=17% Similarity=0.277 Sum_probs=50.1
Q ss_pred ccEEEEEEEC--CeEeecCCCCCC---------ccccCC-eEEEEeeeec-C-CCCCceEEEEEccCCcCchhhhHHHHH
Q 002853 19 LGLEIWCIEN--LQLVSVPKSSHG---------KFYTGS-AYVILNTALL-K-SGPPQHDIHYWLGNDVNEEDSTLVSDK 84 (873)
Q Consensus 19 ~gl~iWrIe~--~~~~~vp~~~~G---------~Fy~gd-sYIVl~t~~~-~-~g~~~~~i~~W~G~~ss~de~g~AA~~ 84 (873)
...-|.+|++ ...+. .+..-| .|-..+ +|+++.-... + +......+.+|++..++..++..-|..
T Consensus 22 ~~~vi~~i~~~~~~i~~-~~~~~~~~~~~~l~~~l~~~~~~y~~~~~~~~~~~~~~~k~vfI~w~P~~a~~k~km~yas~ 100 (132)
T cd00013 22 TRWIIFKIDDDKKEIVV-EKTGEGGESFDEFVEELPEDECRYALYDYDFTTEGSKKSKIVFIYWSPETAPVKSKMLYASS 100 (132)
T ss_pred eeEEEEEEcCCCCEEEE-EecCCCCCCHHHHHHhCCcCCceEEEEEecccCCCccccCEEEEEECCCCCChhhhhhhHHH
Confidence 4566777776 23332 222222 233344 4776543221 1 223456788999999999998887777
Q ss_pred HHHHHHHhCCCceEEEeeccCCcH
Q 002853 85 ALELDAALGSCTVQYREVQGQETE 108 (873)
Q Consensus 85 aveLd~~lgg~~vq~Re~QG~Es~ 108 (873)
-..|-+.|+|-. .+++..+..
T Consensus 101 k~~l~~~l~~~~---~~i~a~~~~ 121 (132)
T cd00013 101 KAALKRELVGIQ---VEVQATDPD 121 (132)
T ss_pred HHHHHHhcCCce---EEEEECChh
Confidence 777777787642 234444443
No 28
>PLN03216 actin depolymerizing factor; Provisional
Probab=26.69 E-value=4.9e+02 Score=25.45 Aligned_cols=91 Identities=16% Similarity=0.189 Sum_probs=56.6
Q ss_pred CccccEEEEEEECC-eEeecCCC-CCCccc--------cCCe-EEEEee-eecCCCCC--ceEEEEEccCCcCchhhhHH
Q 002853 16 GKKLGLEIWCIENL-QLVSVPKS-SHGKFY--------TGSA-YVILNT-ALLKSGPP--QHDIHYWLGNDVNEEDSTLV 81 (873)
Q Consensus 16 G~~~gl~iWrIe~~-~~~~vp~~-~~G~Fy--------~gds-YIVl~t-~~~~~g~~--~~~i~~W~G~~ss~de~g~A 81 (873)
++....-|.+|.+. +.+.|.+. .-|..| +.+| |+|+.- |....|.. .....||...+++..++-.-
T Consensus 26 ~k~~r~iifkI~~~~~~ivv~~~~~~~~~~~d~~~~L~~~~~rY~vyd~~~~~~~g~~~~klvFI~w~Pd~a~vk~KMlY 105 (141)
T PLN03216 26 KKVHRYIVFKIDEKSRKVTVDKVGGPGESYDDLAASLPTDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPEASRIRAKMLY 105 (141)
T ss_pred CCCceEEEEEEcCCCCEEEEEecCCCCCCHHHHHHhCCCCCCeEEEEEeEeccCCCCcccCEEEEEECCCCCCHHHHHHH
Confidence 44347899999865 33334322 223323 3344 887543 22233333 45567899999999998887
Q ss_pred HHHHHHHHHHhCCCceEEEeeccCCcHH
Q 002853 82 SDKALELDAALGSCTVQYREVQGQETEK 109 (873)
Q Consensus 82 A~~aveLd~~lgg~~vq~Re~QG~Es~~ 109 (873)
|.--.-|-+.|+|-. .++|..+..+
T Consensus 106 AssK~~lk~~l~gi~---~~iqatd~~e 130 (141)
T PLN03216 106 ATSKDGLRRVLDGVH---YELQATDPTE 130 (141)
T ss_pred HHHHHHHHHHhcCCe---EEEEECChHh
Confidence 777777888888743 3577766554
No 29
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=23.04 E-value=74 Score=32.39 Aligned_cols=79 Identities=23% Similarity=0.270 Sum_probs=55.7
Q ss_pred eEEEEEEecCCCceEEEEeccCCCCcCCCCeEEEEcCCeEEEEECCCCCHHHHHHHHHHHHHhCCCCceEEeecCCCchh
Q 002853 516 MALFCIQGTSPCNMQAFQVDRVSTCLNSSYCYILQNGASVFTWIGNLSSSRDHDLLDRMVELINPTWQPISVREGSEPEV 595 (873)
Q Consensus 516 ~~Lf~V~g~~~~~~~avqV~~~~ssLnS~d~fIL~~~~~vyvW~G~~ss~~e~~~a~~~a~~l~~~~~~~~v~EG~E~~~ 595 (873)
--++||.|..|--.+ |--+..--|+++..|||.+.+.++- .++.++..+++. ++.-+.+.-.|-.|++
T Consensus 92 ~d~vRiSG~EP~l~~--EHvlevIeLl~~~tFvlETNG~~~g--------~drslv~el~nr--~nv~vRVsvKG~dpes 159 (228)
T COG5014 92 CDLVRISGAEPILGR--EHVLEVIELLVNNTFVLETNGLMFG--------FDRSLVDELVNR--LNVLVRVSVKGWDPES 159 (228)
T ss_pred CcEEEeeCCCccccH--HHHHHHHHhccCceEEEEeCCeEEe--------cCHHHHHHHhcC--CceEEEEEecCCCHHH
Confidence 357888886553222 2222234578999999999888874 356777777776 3456777788999999
Q ss_pred hhhhcCCCCCC
Q 002853 596 FWNALGGKSEY 606 (873)
Q Consensus 596 FW~~LGg~~~y 606 (873)
|-++-|-..+|
T Consensus 160 F~kIT~asp~~ 170 (228)
T COG5014 160 FEKITGASPEY 170 (228)
T ss_pred HHHHhcCChHH
Confidence 99988776665
No 30
>cd00013 ADF Actin depolymerisation factor/cofilin -like domains; present in a family of essential eukaryotic actin regulatory proteins; these proteins enhance the turnover rate of actin and interact with actin monomers as well as actin filaments.
Probab=20.56 E-value=4.5e+02 Score=24.75 Aligned_cols=53 Identities=17% Similarity=0.258 Sum_probs=33.4
Q ss_pred eeeeccEEEEEeecCC----CCcceEEEEEEcCCCCCHHHHHHHHHHHHHHHHhccC
Q 002853 411 KLFSGDCYIVKYTYPG----NGRDENVIYAWFGHESMTEDRAAAISHMSAIVDSTRG 463 (873)
Q Consensus 411 ~FysgdcYIvl~ty~~----~~~~~~~iy~W~G~~ss~~e~~~aa~~a~~l~~~~~~ 463 (873)
+|-..+|.-++|.|.. ..+...++.+|.|..+...++..-+..-..+...++|
T Consensus 54 ~l~~~~~~y~~~~~~~~~~~~~~~k~vfI~w~P~~a~~k~km~yas~k~~l~~~l~~ 110 (132)
T cd00013 54 ELPEDECRYALYDYDFTTEGSKKSKIVFIYWSPETAPVKSKMLYASSKAALKRELVG 110 (132)
T ss_pred hCCcCCceEEEEEecccCCCccccCEEEEEECCCCCChhhhhhhHHHHHHHHHhcCC
Confidence 4555666444555532 3456778889999999998886544444445555544
Done!