Query 002854
Match_columns 873
No_of_seqs 285 out of 697
Neff 4.7
Searched_HMMs 46136
Date Thu Mar 28 12:08:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002854.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002854hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1246 DNA-binding protein ju 100.0 1E-78 2.3E-83 735.3 23.2 537 11-575 69-621 (904)
2 KOG0958 DNA damage-responsive 100.0 6.9E-74 1.5E-78 649.9 16.5 308 29-419 12-322 (690)
3 PF02373 JmjC: JmjC domain, hy 100.0 1.7E-32 3.6E-37 252.2 9.3 114 272-388 1-114 (114)
4 smart00545 JmjN Small domain f 99.8 5.5E-20 1.2E-24 145.1 4.8 42 31-72 1-42 (42)
5 PF02375 JmjN: jmjN domain; I 99.6 1.2E-16 2.5E-21 120.9 3.3 34 33-66 1-34 (34)
6 PF02928 zf-C5HC2: C5HC2 zinc 99.5 3.3E-15 7.2E-20 124.1 4.3 54 495-548 1-54 (54)
7 smart00541 FYRN "FY-rich" doma 99.4 2.6E-13 5.5E-18 108.6 2.3 43 813-856 2-44 (44)
8 PF05964 FYRN: F/Y-rich N-term 99.3 3E-13 6.6E-18 112.4 1.2 51 805-855 3-54 (54)
9 smart00558 JmjC A domain famil 99.3 1.7E-12 3.7E-17 107.8 3.6 56 244-302 2-57 (57)
10 KOG1246 DNA-binding protein ju 98.3 4.2E-07 9E-12 112.5 3.2 177 242-426 604-789 (904)
11 PF13621 Cupin_8: Cupin-like d 96.6 0.0025 5.3E-08 66.0 5.1 108 270-391 132-248 (251)
12 KOG2131 Uncharacterized conser 96.2 0.0081 1.8E-07 67.3 6.4 105 272-392 201-305 (427)
13 KOG1356 Putative transcription 94.3 0.058 1.2E-06 65.9 5.5 113 303-416 740-859 (889)
14 KOG2130 Phosphatidylserine-spe 93.6 0.04 8.7E-07 61.0 2.2 131 255-395 166-303 (407)
15 PF08007 Cupin_4: Cupin superf 87.7 1.9 4E-05 48.2 8.3 105 268-397 113-218 (319)
16 smart00154 ZnF_AN1 AN1-like Zi 49.2 8.5 0.00019 30.5 1.0 33 495-529 1-35 (39)
17 COG2461 Uncharacterized conser 35.3 23 0.0005 41.1 2.0 43 30-74 198-240 (409)
18 COG1791 Uncharacterized conser 22.7 64 0.0014 33.8 2.5 44 348-396 111-161 (181)
No 1
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=100.00 E-value=1e-78 Score=735.31 Aligned_cols=537 Identities=42% Similarity=0.690 Sum_probs=442.7
Q ss_pred cccccccccCCCcCCCCCCCCCceecCChhhhcCHHHHHHHHHHhhhhCCeeeecCCCCCCCCCCCcccccccccccccc
Q 002854 11 HIKEISARWDPAEACRPIIDEAPVFYPTVEEFEDTLGYIAKIRSKAESFGICRIVPPSSWTPPCPLKAKNIWENAKFSTR 90 (873)
Q Consensus 11 ~~~~~~~~~~P~~~~~~~i~eaPVF~PT~EEF~DPl~YI~kI~~~AekyGICKIVPP~~WkPp~~l~~k~i~~~~kF~Tr 90 (873)
...++...+.+..+.+......+.+.+....|.|...|+..++..++.||+|.++||..|+|++++..+..|...+|.++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (904)
T KOG1246|consen 69 TLEVDFYSDLTELAKRVISNLKPLLLSIPKNFKDKLLYISKLKLRAEFYGICEKLPPPTSKPKEPLKGKQNWFSSGFDQR 148 (904)
T ss_pred ccccchhhhhhhhhhcccccccccccccCccccchhhccccccccccccccccccCCcccCCCCcCCcccccccCCCCCc
Confidence 44555666777777777888899999999999999999999999999999999999999999999999999999999999
Q ss_pred -chhhhhhcccccchhhhh------h-hhhhhcccccccccccC-CCC-Cc---cccccccccccccccCC-CCCHHHHH
Q 002854 91 -IQQIDLLQNREPMRKKIR------S-RKRKRRRQSRMGSTRRN-ANS-SS---EANAAETDEKFGFQSGP-DLTLEGFQ 156 (873)
Q Consensus 91 -iQ~V~~lq~r~p~~k~~~------~-~k~k~~~~~~~g~~~r~-~~s-~s---~~~~~~~~e~fgF~~g~-~~tL~~F~ 156 (873)
+|.++..+.+...+.+.. + .+..+......+..+.. +.. +. ........+.+||..|. +||+..|+
T Consensus 149 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~yt~~~f~ 228 (904)
T KOG1246|consen 149 EVEFIDYPQCNTCSKGKEEKLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPTPESKPNYKFGFEQGSREYTLPKFE 228 (904)
T ss_pred ccccccchhhhccccCCCccceecccccCcccccccCCCCCcCCcCcccCCcccccccCCcccccCcCCCCCccccchhh
Confidence 888887766655443321 1 11111111111111110 000 10 01123346889998776 99999999
Q ss_pred HHHHHHHHhhhCCCCCCCCCcCCccccccCCCCHHHHHHHhhhhccCCCCceeeeecCCCCCCCcCCCCCCCCCCCCC-C
Q 002854 157 KYAQNFKECYFGMNDSKEDVKSDGFEHKRLEPSVVDIEGEYWRIIERPTDEVEVYYGADLETGAFASGFPKASSLGTE-S 235 (873)
Q Consensus 157 ~~A~~fk~~~f~~~~~~~~~~~~~~~~~~~~ps~e~vE~efWr~V~~~~~~veV~YGaDl~ss~~GSgFP~~~~~~~~-~ 235 (873)
++|+.|+..||.+..+.. ++.+++|++||++|...+..++|+||+|+.+..+|+|||........ .
T Consensus 229 ~~~~~~~~~~~~~~~~~~-------------~~~~~vE~e~w~~v~~~~~~~~~~~g~d~~~~~~~s~~~~~~~~~~~~~ 295 (904)
T KOG1246|consen 229 EYADNFKKDYFPKSKNSP-------------DSTEDVEKEFWRLVASNLESVEVLYGADLSTKEFGSGFPKSASGPLLGS 295 (904)
T ss_pred hHhhhhhccccccccCCC-------------CchHHHHHHHHHhhcccccceeeeeccchhhccccccccccCCCCCCCc
Confidence 999999999998765432 33789999999999999899999999999999999999987654333 4
Q ss_pred chhhhhccCCCCCCCCCCCCCcccccCCCCCCcccceEEeecccccccccccCccceeeeeeeeCCcccEEEeCCccHHH
Q 002854 236 DLDQYAMSGWNLNNLPRLPGSVLAFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHAST 315 (873)
Q Consensus 236 ~~~~y~~~~WNLnnLp~l~gSLL~~~~~~I~GVttP~LYiGM~fStf~WH~ED~~L~SINYlH~GapK~WY~VP~~~aek 315 (873)
..++|+.++|||+|+|++++|+|+|.+.+|+|+++||+|+||+||+||||+|||++||+||+|+|+||+||+||++++++
T Consensus 296 ~~~~y~~s~wnL~~i~~~~~svl~~~~~di~g~~~p~l~~gm~fs~~~wh~ed~~~~slny~h~g~pk~wy~v~~~~ae~ 375 (904)
T KOG1246|consen 296 EAEKYSNSGWNLNNIPRLEGSVLSHIDTDISGVTVPWLYIGMCFSTFCWHVEDHSLYSLNYLHLGEPKTWYSVPGSAAEK 375 (904)
T ss_pred chhhhccCcccccccccCCccccccccCCcCccccccccccccccccccccCCccccccchhhcCCceEEEecCcchHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCchhhccCchhhhhcccccChhhHhhcCCCeeEeecCCCcEEEEcCCcceeeecccccceeeecccccchhh
Q 002854 316 LEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLA 395 (873)
Q Consensus 316 FE~l~k~~~p~lf~~~pd~L~h~~t~isP~~L~~~GIpv~r~vQ~pGEFVVTfPgaYHsgfn~GfN~aEAVNFA~~dWL~ 395 (873)
||++|++..|+++..+|++++++.++++|..|.++|||+++++|+|||||||||++||+|||+|||++|+|||||.+||+
T Consensus 376 ~e~~~~~~~p~~~~~~pd~~~~~~~~~~p~~l~~~gvpv~~~~q~~ge~vitfP~~Y~~g~~~gf~~~e~vn~ap~dwl~ 455 (904)
T KOG1246|consen 376 FEKAMNKLSPGLFIEQPDLLHALVTLMSPNFLTDEGVPVYRTVQNPGEFVITFPRAYHAGFNCGFNFAEAVNFAPSDWLP 455 (904)
T ss_pred HHHHHHhhCCcccccCcccccccccccCcchhhcCCCCceecccCCCCEeecCCCeeeecccccccHHHhcccCCcchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhccCCCCccHHHHHHHHHHHHHHHHHHHhhhc-ccCCCccchhhccccchhhHHHHHHHHHHHHhhcccC
Q 002854 396 HGQQAVELYSEQHRKTSLSHDKLLFGSVQAAIKALWELSVLQ-KKTPGNRKWKDACGKDGVLTKAIKTRVQMKKEGLQKL 474 (873)
Q Consensus 396 ~g~~a~e~y~~~~r~~~fS~e~LL~~~A~~~~~~l~el~ll~-k~~~~~~~~~~~c~~~~il~~~~k~ri~~E~~~~~~l 474 (873)
+|+.++++|+...+.++|||++|++.+|...+...+.+.+.. ++......|...+...++....+..+ |+.....+
T Consensus 456 ~gr~~~~~~~~~~~~~lfs~~~l~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 532 (904)
T KOG1246|consen 456 VGRGAAEAYSLLLRLSLFSHDELALLNAENPVKIRKQLSLASDKNDDLAGESKKWLEESGRSKLVIEKY---ERYLLESL 532 (904)
T ss_pred HHHHHHHHHHhhccCCccCHHHHHHhccccchhhhhhhccccccchhhhchhhhhhhhcccchhHHHHH---HHHHHHhc
Confidence 999999999999999999999999999998776555443322 22111222322222233222212111 11111111
Q ss_pred chhhhhhhcccccCCccccccccccccchhccccccccCCcceeccchhhhcCCCCCceEEEEecCHHHHHHHHHHHHhc
Q 002854 475 PSYFKLQKMEIDFDLKTERECFSCFYDLHLSAAGCKCSPDRFACLKHANIFCSCEIDHRFVILRYSTDELNTLVEALEGG 554 (873)
Q Consensus 475 ~~~~~~~k~~~~~d~~~er~C~~Ck~~cfLS~V~C~C~~~~v~CL~Ha~~lCsC~~~~~~LlyRYt~~EL~~lv~~le~~ 554 (873)
. |+..+++|..|+++||++++.|+|.+.+..||.|..++|+|....++++|||++++|..++.+++++
T Consensus 533 ---------~---~~~~~~~c~~ck~~~~l~~~~~~c~~~~~~cl~h~~~~~~~~~~~~~l~~r~~id~l~~~~~k~~~~ 600 (904)
T KOG1246|consen 533 ---------P---DDMLERQCEACKRNCFLSEIECKCKPKKLECLSHYKKLCSCPGTDKTLLLRTNIDELDALLDKLQLH 600 (904)
T ss_pred ---------c---chhhHHHHHHhcccHhhhhhhhcccccccccccchhhcCCCCccccEEEEecchhHHHHHhhhhhhh
Confidence 1 2223899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhhcCCCCC
Q 002854 555 LDALKELASKNFKWADCSDTD 575 (873)
Q Consensus 555 ~~~~~~W~~~~~~~l~~~~~~ 575 (873)
...+..|..++.+++......
T Consensus 601 ~~~~~~~~~~~~~~~~~~~~~ 621 (904)
T KOG1246|consen 601 ELSKLPWFGRVDGALPSLGFR 621 (904)
T ss_pred hhhcchhhhhhhhhhcccccC
Confidence 999999999999999876654
No 2
>KOG0958 consensus DNA damage-responsive repressor GIS1/RPH1, jumonji superfamily [Replication, recombination and repair]
Probab=100.00 E-value=6.9e-74 Score=649.91 Aligned_cols=308 Identities=37% Similarity=0.684 Sum_probs=264.3
Q ss_pred CCCCceecCChhhhcCHHHHHHHHHHhhh-hCCeeeecCCCCCCCCCCCccccccccccccccchhhhhhcccccchhhh
Q 002854 29 IDEAPVFYPTVEEFEDTLGYIAKIRSKAE-SFGICRIVPPSSWTPPCPLKAKNIWENAKFSTRIQQIDLLQNREPMRKKI 107 (873)
Q Consensus 29 i~eaPVF~PT~EEF~DPl~YI~kI~~~Ae-kyGICKIVPP~~WkPp~~l~~k~i~~~~kF~TriQ~V~~lq~r~p~~k~~ 107 (873)
.+++||||||||||+||.+||++|+.+|. ++||+|||||++|+|+.-.+ +| +++++++.||++-+.|.+.++
T Consensus 12 s~~I~tF~PtmeEF~dF~~yi~~IEs~G~h~aGlaKVipPkeWk~r~~~~--di-~di~I~~PiqQ~v~g~~G~F~---- 84 (690)
T KOG0958|consen 12 SDGIPTFYPTMEEFADFSAYIAYIESQGAHRAGLAKVIPPKEWKPRLMYD--DI-DDIKIPAPIQQVVTGQGGLFT---- 84 (690)
T ss_pred CCCcceeCcCHHHHHhHHHHHHHHHhccchhcCeeeeeCCccCCcccccC--ch-hheecChhHHHHhhccCceEE----
Confidence 67899999999999999999999999965 59999999999999986554 33 678999999998876654433
Q ss_pred hhhhhhhcccccccccccCCCCCccccccccccccccccCCCCCHHHHHHHHHHHHHhhhCCCCCCCCCcCCccccccCC
Q 002854 108 RSRKRKRRRQSRMGSTRRNANSSSEANAAETDEKFGFQSGPDLTLEGFQKYAQNFKECYFGMNDSKEDVKSDGFEHKRLE 187 (873)
Q Consensus 108 ~~~k~k~~~~~~~g~~~r~~~s~s~~~~~~~~e~fgF~~g~~~tL~~F~~~A~~fk~~~f~~~~~~~~~~~~~~~~~~~~ 187 (873)
+|+.+..+.|++.+|+++|+.- .| ..+. ..
T Consensus 85 ---------------------------------~~Ni~~~kam~v~q~r~lAns~--~y-~tpr--------------~~ 114 (690)
T KOG0958|consen 85 ---------------------------------QYNIQDKKAMTVRQFRDLANSD--KY-CTPR--------------GS 114 (690)
T ss_pred ---------------------------------EeehhhccccChhhhhhhhhhc--cc-CCCc--------------cc
Confidence 2344556789999999999972 22 2111 01
Q ss_pred CCHHHHHHHhhhhccCCCCceeeeecCCCCCCCcCCCCCCCCCCCCCCchhhhhccCCCCCCCCCCCCCcccccCCCCCC
Q 002854 188 PSVVDIEGEYWRIIERPTDEVEVYYGADLETGAFASGFPKASSLGTESDLDQYAMSGWNLNNLPRLPGSVLAFEGSDISG 267 (873)
Q Consensus 188 ps~e~vE~efWr~V~~~~~~veV~YGaDl~ss~~GSgFP~~~~~~~~~~~~~y~~~~WNLnnLp~l~gSLL~~~~~~I~G 267 (873)
-..+|+|+.||+.+.. ..+.||||+.+++| + |....||+++|+...+- ...+..|.|
T Consensus 115 ~d~~dle~kYWKnltf----~~PiYGaD~~gSi~----~-------------~~~~~WNi~~L~tild~--~~~~~~i~g 171 (690)
T KOG0958|consen 115 QDFEDLEQKYWKNLTF----DSPIYGADINGSIY----D-------------EDLDEWNIARLDTILDL--EECGIIIEG 171 (690)
T ss_pred ccHHHHHHHHHhcccC----CCCcccccCCCccC----c-------------ccccccccccccchhch--hhcceeecc
Confidence 2478999999999985 46899999986554 3 22569999999874221 578889999
Q ss_pred cccceEEeecccccccccccCccceeeeeeeeCCcccEEEeCCccHHHHHHHHHhhCchhhccCchhhhhcccccChhhH
Q 002854 268 VLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSVL 347 (873)
Q Consensus 268 VttP~LYiGM~fStf~WH~ED~~L~SINYlH~GapK~WY~VP~~~aekFE~l~k~~~p~lf~~~pd~L~h~~t~isP~~L 347 (873)
||||+||+|||.++|+||+||++||||||+|||+||+||+||+++.++||+++.+.+|+...+|++||+|++++++|.+|
T Consensus 172 vNt~yLyfGmwKttFaWHtEdmDLySINyLHFGaPK~WYaIP~eh~~rfekla~~~fp~~~~~C~aFLRHK~~LiSP~~L 251 (690)
T KOG0958|consen 172 VNTPYLYFGMWKTTFAWHTEDMDLYSINYLHFGAPKQWYAIPPEHGDRFEKLASELFPDSSQGCPAFLRHKMTLISPSVL 251 (690)
T ss_pred cCccceeeeeeecccccccCCccceeeeeeecCCCcceeecCHHHHHHHHHHHHhhCCccccCCHHHHhhcccccCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCeeEeecCCCcEEEEcCCcceeeecccccceeeecccccchhhhHHHHHHHHhhccCCCC--ccHHHHH
Q 002854 348 KAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQHRKTS--LSHDKLL 419 (873)
Q Consensus 348 ~~~GIpv~r~vQ~pGEFVVTfPgaYHsgfn~GfN~aEAVNFA~~dWL~~g~~a~e~y~~~~r~~~--fS~e~LL 419 (873)
+++|||+++++|++||||||||++||+|||+||||+|++|||++.|+++|+.|..+- ++..+ ||++.+.
T Consensus 252 kqnGIpfn~ivqeagEFmITFPygyHaGFN~GfN~aES~nFat~Rwi~YgK~a~~C~---C~~d~vkism~~fv 322 (690)
T KOG0958|consen 252 KQNGIPFNRIVQEAGEFMITFPYGYHAGFNHGFNCAESTNFATPRWIDYGKQALLCS---CRSDSVKISMDPFV 322 (690)
T ss_pred HHcCCCcceeeecCCcEEEecCcccccccccchhhhhhhcccchhhhhhcccccccc---cccceeeeechhhh
Confidence 999999999999999999999999999999999999999999999999999999774 33333 4555543
No 3
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=99.97 E-value=1.7e-32 Score=252.25 Aligned_cols=114 Identities=46% Similarity=0.774 Sum_probs=101.3
Q ss_pred eEEeecccccccccccCccceeeeeeeeCCcccEEEeCCccHHHHHHHHHhhCchhhccCchhhhhcccccChhhHhhcC
Q 002854 272 WLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLKAEG 351 (873)
Q Consensus 272 ~LYiGM~fStf~WH~ED~~L~SINYlH~GapK~WY~VP~~~aekFE~l~k~~~p~lf~~~pd~L~h~~t~isP~~L~~~G 351 (873)
|||+||.||+++||+||+.++||||+|+|++|+||+||++++++|++++++. ...++++++.+...++.|+.|+++|
T Consensus 1 ~~~ig~~~s~t~~H~e~~~~~sv~~~~~g~~k~W~~v~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~p~~l~~~g 77 (114)
T PF02373_consen 1 WLYIGMKGSYTPWHIEDNGLSSVNYHHFGGSKVWYIVPPEDADKFEKFLRSK---ESQNCPQFLDHKNIFVSPEQLKKAG 77 (114)
T ss_dssp EEEEE-TTEEEEEEE-GGG-EEEEEEEEESEEEEEEE-GGGHHHHHHHHHHH---HHHHSTTGGCTGGEEEGHHHHHHTT
T ss_pred CEEEeCCCcCCCcEecCCCCceeeeeccCcceEeEEechhhhhhHHHHHhhc---ccccccccccccccccceeeeeccC
Confidence 7999999999999999999999999999999999999999999999999988 3467888999999999999999999
Q ss_pred CCeeEeecCCCcEEEEcCCcceeeecccccceeeecc
Q 002854 352 VPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNV 388 (873)
Q Consensus 352 Ipv~r~vQ~pGEFVVTfPgaYHsgfn~GfN~aEAVNF 388 (873)
||+++++|+|||+|||+||+||+++|.|+|++|||||
T Consensus 78 i~~~~~~Q~~Ge~V~i~pg~~H~v~n~g~~i~~a~Nf 114 (114)
T PF02373_consen 78 IPVYRFVQKPGEFVFIPPGAYHQVFNLGDNISEAVNF 114 (114)
T ss_dssp S--EEEEEETT-EEEE-TT-EEEEEESSSEEEEEEEE
T ss_pred cccccceECCCCEEEECCCceEEEEeCCceEEEEecC
Confidence 9999999999999999999999999999999999998
No 4
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=99.79 E-value=5.5e-20 Score=145.12 Aligned_cols=42 Identities=67% Similarity=1.376 Sum_probs=41.1
Q ss_pred CCceecCChhhhcCHHHHHHHHHHhhhhCCeeeecCCCCCCC
Q 002854 31 EAPVFYPTVEEFEDTLGYIAKIRSKAESFGICRIVPPSSWTP 72 (873)
Q Consensus 31 eaPVF~PT~EEF~DPl~YI~kI~~~AekyGICKIVPP~~WkP 72 (873)
++||||||+|||+||++||++|+++|++|||||||||.+|+|
T Consensus 1 eiPvf~Pt~eEF~Dp~~yi~~i~~~~~~yGi~KIvPP~~w~p 42 (42)
T smart00545 1 EIPVFYPTMEEFKDPLAYISKIRPQAEKYGICKVVPPKSWKP 42 (42)
T ss_pred CCCeEcCCHHHHHCHHHHHHHHHHHHhhCCEEEEECCCCCCc
Confidence 689999999999999999999999999999999999999997
No 5
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=99.63 E-value=1.2e-16 Score=120.92 Aligned_cols=34 Identities=59% Similarity=1.248 Sum_probs=27.8
Q ss_pred ceecCChhhhcCHHHHHHHHHHhhhhCCeeeecC
Q 002854 33 PVFYPTVEEFEDTLGYIAKIRSKAESFGICRIVP 66 (873)
Q Consensus 33 PVF~PT~EEF~DPl~YI~kI~~~AekyGICKIVP 66 (873)
||||||+|||+||++||++|+++|++||||||||
T Consensus 1 Pvf~Pt~eEF~dp~~yi~~i~~~g~~~Gi~KIvP 34 (34)
T PF02375_consen 1 PVFYPTMEEFKDPIKYISSIEPEGEKYGICKIVP 34 (34)
T ss_dssp EEE---HHHHS-HHHHHHHHHHTTGGGSEEEE--
T ss_pred CcccCCHHHHhCHHHHHHHHHHHHHHCCEEEecC
Confidence 8999999999999999999999999999999998
No 6
>PF02928 zf-C5HC2: C5HC2 zinc finger; InterPro: IPR004198 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a predicted zinc finger with eight potential zinc ligand binding residues. This domain is found in Jumonji [], and may have a DNA binding function. The mouse jumonji protein is required for neural tube formation, and is essential for normal heart development. It also plays a role in the down-regulation of cell proliferation signalling. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005634 nucleus
Probab=99.55 E-value=3.3e-15 Score=124.08 Aligned_cols=54 Identities=41% Similarity=0.835 Sum_probs=52.2
Q ss_pred cccccccchhccccccccCCcceeccchhhhcCCCCCceEEEEecCHHHHHHHH
Q 002854 495 CFSCFYDLHLSAAGCKCSPDRFACLKHANIFCSCEIDHRFVILRYSTDELNTLV 548 (873)
Q Consensus 495 C~~Ck~~cfLS~V~C~C~~~~v~CL~Ha~~lCsC~~~~~~LlyRYt~~EL~~lv 548 (873)
|.+||++||||+|.|+|++++++||+|+.++|+|++++++|+|||+++||++|+
T Consensus 1 C~~Ck~~~yLS~v~C~C~~~~~~CL~H~~~~c~C~~~~~~L~yR~~~~eL~~lv 54 (54)
T PF02928_consen 1 CSICKAYCYLSAVTCSCKPDKVVCLRHAKELCSCPCSNHTLRYRYDDEELESLV 54 (54)
T ss_pred CcccCCchhhcccccCCCCCcEEccccchhhcCCCCCCeEEEEeCCHHHHHHhC
Confidence 889999999999999999999999999999999999999999999999999885
No 7
>smart00541 FYRN "FY-rich" domain, N-terminal region. is sometimes closely juxtaposed with the C-terminal region (FYRC), but sometimes is far distant. Unknown function, but occurs frequently in chromatin-associated proteins.
Probab=99.35 E-value=2.6e-13 Score=108.58 Aligned_cols=43 Identities=44% Similarity=0.845 Sum_probs=39.8
Q ss_pred ceeecccccccccccCCCceeeeeEeeecCcccccchhhhhhcC
Q 002854 813 CVMCGKLWCSKQAIFPKGFRSRVNFYSVLNPEKVCNYISEVLDA 856 (873)
Q Consensus 813 ~~~~~~~w~~~~~i~p~gf~s~~~~~s~~dp~~~~~yise~~d~ 856 (873)
.+..+++||+++||||+||+++++|.|+.||+++|.| +|+||+
T Consensus 2 ~~~~~~~fh~~~~IyP~Gy~s~R~y~S~~dp~~~c~Y-~c~i~~ 44 (44)
T smart00541 2 LPIQGKLFHSEDAIFPVGYKSTRKYWSVKDPNRRCNY-SCVIDE 44 (44)
T ss_pred ccccCCCcccCCEEecCCEEEEEEEecccCCCCEEEE-EEEECC
Confidence 3556799999999999999999999999999999999 999985
No 8
>PF05964 FYRN: F/Y-rich N-terminus; InterPro: IPR003888 The "FY-rich" domain N-terminal region is sometimes closely juxtaposed with the C-terminal region (IPR003889 from INTERPRO), but sometimes is far distant. It is of unknown function, but occurs frequently in chromatin-associated proteins like trithorax and its homologues.; GO: 0005634 nucleus; PDB: 2WZO_A.
Probab=99.33 E-value=3e-13 Score=112.45 Aligned_cols=51 Identities=25% Similarity=0.617 Sum_probs=39.2
Q ss_pred ceeeccccceeec-ccccccccccCCCceeeeeEeeecCcccccchhhhhhc
Q 002854 805 CVEPINFGCVMCG-KLWCSKQAIFPKGFRSRVNFYSVLNPEKVCNYISEVLD 855 (873)
Q Consensus 805 ~~~~~~~g~~~~~-~~w~~~~~i~p~gf~s~~~~~s~~dp~~~~~yise~~d 855 (873)
++..+++|.|+.+ +.||++++|||.||++++.|+|..||.++|.|+|||||
T Consensus 3 sl~v~sLG~i~~~~~~fh~~~~IyP~Gy~s~R~y~S~~~p~~~~~Y~~~Ild 54 (54)
T PF05964_consen 3 SLTVHSLGKIVPDRPAFHSERYIYPVGYKSSRLYWSTVDPRRRCRYTCEILD 54 (54)
T ss_dssp TEEEEEEEE---SSGGGB-SS-B--EEEEEEEEEE-SS-TTSEEEEEEEEE-
T ss_pred ceEEEECeEEeCCCCCccCCCEEeeCCEEEEEEEccccCCCCEEEEEEEEeC
Confidence 5788999999999 49999999999999999999999999999999999998
No 9
>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily. Probable enzymes, but of unknown functions, that regulate chromatin reorganisation processes (Clissold and Ponting, in press).
Probab=99.29 E-value=1.7e-12 Score=107.76 Aligned_cols=56 Identities=43% Similarity=0.590 Sum_probs=53.6
Q ss_pred CCCCCCCCCCCCCcccccCCCCCCcccceEEeecccccccccccCccceeeeeeeeCCc
Q 002854 244 GWNLNNLPRLPGSVLAFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDP 302 (873)
Q Consensus 244 ~WNLnnLp~l~gSLL~~~~~~I~GVttP~LYiGM~fStf~WH~ED~~L~SINYlH~Gap 302 (873)
.||++++|. .+++|++++.+++|+++||+|+||++|+|+||+|++++ +||+|.|+.
T Consensus 2 ~~~l~~lP~-~~~ll~~~~~~~~~~~~~~~~~G~~~s~t~~H~d~~~~--~n~~~~~~~ 57 (57)
T smart00558 2 LNNLAKLPF-KLNLLSDLPEDILGPDVPYLYMGMAGSVTPWHIDDYDL--VNYLHQGAG 57 (57)
T ss_pred cchhhhCCC-cchHHHHCCcccCCCCcceEEEeCCCCccceeEcCCCe--EEEEEecCC
Confidence 799999999 88999999999999999999999999999999999999 999999863
No 10
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=98.26 E-value=4.2e-07 Score=112.53 Aligned_cols=177 Identities=20% Similarity=0.169 Sum_probs=145.5
Q ss_pred ccCCCCCCCCCCC-----C-CcccccCCCCCCcccceEEeecccccccccccCccceeeeeeeeCCcccEEEeCCccHHH
Q 002854 242 MSGWNLNNLPRLP-----G-SVLAFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHAST 315 (873)
Q Consensus 242 ~~~WNLnnLp~l~-----g-SLL~~~~~~I~GVttP~LYiGM~fStf~WH~ED~~L~SINYlH~GapK~WY~VP~~~aek 315 (873)
..+|...-.-.++ + ++|.+.+..+-||++..+|+...++.+.-|.|...+.++|.++..+.+.|++||.++...
T Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~~~~n~~~~~~k~~~~rt~~~~~n~~~~s~~~n~~p~~~~~~~v~~~~~~~ 683 (904)
T KOG1246|consen 604 KLPWFGRVDGALPSLGFRGANLLEHAGEKILGMNTVQCYMKVPGSRTTAHQENSALASININLGPGDCVWFAVPLEYWGV 683 (904)
T ss_pred cchhhhhhhhhhcccccCCcchHHHHHHHhhcccccceeeccccccchhHHHHHHHhhhhccCCcccceeeecccchhHH
Confidence 4577655544332 4 889999999999999999999999999999999999999999988889999999999999
Q ss_pred HHHHHHhhCchhhccCchhhhhccccc-ChhhHhhcCCCeeEeecCCCcEEEEcCCcceeeecccccceeeecccccchh
Q 002854 316 LEKAMRKHLPDLFEEQPDLLHELVTQL-SPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWL 394 (873)
Q Consensus 316 FE~l~k~~~p~lf~~~pd~L~h~~t~i-sP~~L~~~GIpv~r~vQ~pGEFVVTfPgaYHsgfn~GfN~aEAVNFA~~dWL 394 (873)
+++++.+.--. ++.. ..|. .-..|...+|++++++|++|++|.++.+.|||....||..+.++|.+...--
T Consensus 684 ~~~~~~~~~~~-------~~~~-~~w~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~v~~~~~~ 755 (904)
T KOG1246|consen 684 VEDACEKHNLK-------YSDS-SVWPSSEEELLNLVIPVQKFIQKAGDLVYVGNGTVHWVQVLGFCINVSWNVSESTFA 755 (904)
T ss_pred HHHHHhhcccc-------ccch-hccchhhHHHHhccchHHHHHhccccccccCCceEEEeeecCccccceecccccchh
Confidence 99998775311 1111 2344 5568999999999999999999999999999999999999999999998854
Q ss_pred h--hHHHHHHHHhhccCCCCccHHHHHHHHHHHH
Q 002854 395 A--HGQQAVELYSEQHRKTSLSHDKLLFGSVQAA 426 (873)
Q Consensus 395 ~--~g~~a~e~y~~~~r~~~fS~e~LL~~~A~~~ 426 (873)
. .....+.+.........+++..+-|++|+..
T Consensus 756 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (904)
T KOG1246|consen 756 QLALALFRHDHNIESKHPSSVPMSFKVWEMAEKE 789 (904)
T ss_pred hhhcchhhhhhhhhccCcccchhhhhhhhHhhcc
Confidence 4 3344444444557788899999999999863
No 11
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=96.61 E-value=0.0025 Score=66.00 Aligned_cols=108 Identities=19% Similarity=0.157 Sum_probs=65.7
Q ss_pred cceEEeecccccccccccCccceeeeeeeeCCcccEEEeCCccHHHHHHHHHhhCchhhc------cCchhhhhcccccC
Q 002854 270 VPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLFE------EQPDLLHELVTQLS 343 (873)
Q Consensus 270 tP~LYiGM~fStf~WH~ED~~L~SINYlH~GapK~WY~VP~~~aekFE~l~k~~~p~lf~------~~pd~L~h~~t~is 343 (873)
..+|+||..+|.+.||.+. ..+++-+..| .|.|+-+||++...+ .+.... ...++. ....-..
T Consensus 132 ~~~l~ig~~gs~t~lH~D~--~~n~~~~i~G-~K~~~L~pP~~~~~l-------~~~~~~~~~~~~~~~d~~-~~d~~~~ 200 (251)
T PF13621_consen 132 SSNLWIGPPGSFTPLHYDP--SHNLLAQIRG-RKRWILFPPDDSPNL-------YPRPDSHGGTVFSWVDPD-NPDLERF 200 (251)
T ss_dssp EEEEEEE-TTEEEEEEE-S--SEEEEEEEES-EEEEEEE-GGGGGGC-------TBETTTST-TCBBSS-TT-S--TTT-
T ss_pred ccEEEEeCCCceeeeeECc--hhhhhhccCC-CEEEEEECCcccccc-------ccceecccccceeeeecc-Chhhhhh
Confidence 5579999999999999887 4566667777 599999999986533 111000 000110 0000111
Q ss_pred hhhHhhcCCCeeEeecCCCcEEEEcCCcceeeecc---cccceeeeccccc
Q 002854 344 PSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNC---GFNCAEAVNVAPV 391 (873)
Q Consensus 344 P~~L~~~GIpv~r~vQ~pGEFVVTfPgaYHsgfn~---GfN~aEAVNFA~~ 391 (873)
|. +. .++.+.++++|||.+++-+|-+|.+.|. +++++..+.|-+.
T Consensus 201 p~-~~--~~~~~~~~l~pGD~LfiP~gWwH~V~~~~~~~~sisvn~w~~~~ 248 (251)
T PF13621_consen 201 PK-FR--KAPPYEVVLEPGDVLFIPPGWWHQVENLSDDDLSISVNYWFRTP 248 (251)
T ss_dssp CG-GG--G--EEEEEEETT-EEEE-TT-EEEEEESTTSSCEEEEEEEEESS
T ss_pred hh-hc--cCceeEEEECCCeEEEECCCCeEEEEEcCCCCeEEEEEEEeccc
Confidence 22 22 2389999999999999999999999999 4677777666543
No 12
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=96.23 E-value=0.0081 Score=67.29 Aligned_cols=105 Identities=22% Similarity=0.186 Sum_probs=78.1
Q ss_pred eEEeecccccccccccCccceeeeeeeeCCcccEEEeCCccHHHHHHHHHhhCchhhccCchhhhhcccccChhhHhhcC
Q 002854 272 WLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLKAEG 351 (873)
Q Consensus 272 ~LYiGM~fStf~WH~ED~~L~SINYlH~GapK~WY~VP~~~aekFE~l~k~~~p~lf~~~pd~L~h~~t~isP~~L~~~G 351 (873)
-.|+|-.+|+++.|.+=-.-+|---+..| -|.|..+||....++.... .+ .| .-+.-..|....
T Consensus 201 Fvy~Gp~gSwtp~HaDVf~s~swS~nicG-~KrWl~~pP~qe~~l~dr~----gn----lp-------~~~~~~~ld~~~ 264 (427)
T KOG2131|consen 201 FVYAGPAGSWTPFHADVFHSPSWSVNICG-RKRWLLYPPEQEQTLADRY----GN----LP-------LPSWITKLDLFR 264 (427)
T ss_pred EEEeccCCCCCccchhhhcCCcceeeeec-ceeEEEeChHHhhhhhhhc----cC----cC-------Cccccccccccc
Confidence 57999999999999766555555556677 6889999999855443332 11 11 112223577778
Q ss_pred CCeeEeecCCCcEEEEcCCcceeeecccccceeeecccccc
Q 002854 352 VPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVD 392 (873)
Q Consensus 352 Ipv~r~vQ~pGEFVVTfPgaYHsgfn~GfN~aEAVNFA~~d 392 (873)
.|.+.+.|+|||.|++--|=||.+.|.|-.++..=|..-..
T Consensus 265 ~~~lei~Qepge~VFvPsGW~hQV~NL~dTISINHNW~N~~ 305 (427)
T KOG2131|consen 265 GPLLEIFQEPGETVFVPSGWHHQVLNLGDTISINHNWCNAT 305 (427)
T ss_pred cchhhhhccCCceeeccCccccccccccceeeecccccccc
Confidence 88899999999999999999999999999988776655444
No 13
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=94.26 E-value=0.058 Score=65.90 Aligned_cols=113 Identities=16% Similarity=0.175 Sum_probs=82.2
Q ss_pred ccEEEeCCccHHHHHHHHHhhCchhhccCc---hhhhhcccccCh----hhHhhcCCCeeEeecCCCcEEEEcCCcceee
Q 002854 303 KIWYGVPGSHASTLEKAMRKHLPDLFEEQP---DLLHELVTQLSP----SVLKAEGVPVYHVVQHSGEFVLTFPRAYHSG 375 (873)
Q Consensus 303 K~WY~VP~~~aekFE~l~k~~~p~lf~~~p---d~L~h~~t~isP----~~L~~~GIpv~r~vQ~pGEFVVTfPgaYHsg 375 (873)
-.|=+....+++|++++++++-.+.-...+ +=+|...+.+.- ....+.||.-..++|..||.||+-.||-|.+
T Consensus 740 ALWhIF~~~Dv~KireyL~k~~~E~~~~~~~v~hPIhDQS~YLd~~lr~RLkeEyGVe~WtfvQ~LGdAVfIPAGaPHQV 819 (889)
T KOG1356|consen 740 ALWHIFRAQDVPKIREYLRKVCKEQGHEVPKVHHPIHDQSWYLDRYLRRRLKEEYGVEPWTFVQFLGDAVFIPAGAPHQV 819 (889)
T ss_pred chhhhhhhcchHHHHHHHHHhhHHhcCCCCcccCCCcccceeccHHHHHHHHHHhCCCccchhhcccceEEecCCCcHHh
Confidence 479999999999999999998654322111 112233344443 2345679999999999999999999999999
Q ss_pred ecccccceeeecccccchhhhHHHHHHHHhhccCCCCccHH
Q 002854 376 FNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQHRKTSLSHD 416 (873)
Q Consensus 376 fn~GfN~aEAVNFA~~dWL~~g~~a~e~y~~~~r~~~fS~e 416 (873)
.|.--++..|+-|..|.-+.....-.+.||.+- ...+.|+
T Consensus 820 rNLkSCikVa~DFVSPE~v~ec~rLT~EfR~Lp-~~h~~~e 859 (889)
T KOG1356|consen 820 RNLKSCIKVAEDFVSPEHVSECFRLTQEFRQLP-QNHKNHE 859 (889)
T ss_pred hhhhhHHHHHHhhCChhhHHHHHHHHHHHhhCC-CcccchH
Confidence 999999999999999998876544444444331 1255554
No 14
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=93.57 E-value=0.04 Score=60.95 Aligned_cols=131 Identities=21% Similarity=0.231 Sum_probs=88.5
Q ss_pred CCcccccCCCCCCcccceEEeecccccccccccCccceeeeeeeeCCcccEEEeCCccHHHHHHHHHhhCchhhccCchh
Q 002854 255 GSVLAFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLFEEQPDL 334 (873)
Q Consensus 255 gSLL~~~~~~I~GVttP~LYiGM~fStf~WH~ED~~L~SINYlH~GapK~WY~VP~~~aekFE~l~k~~~p~lf~~~pd~ 334 (873)
..|+.+++..= -=---|+-+|-..|-+.||++...+-.-|-+..| -|.|.-+|+.--..+-+.. ++.-.+|++-
T Consensus 166 dDlF~y~g~e~-RPpyRWfvmGParSGtsiHIDPlgTSAWNtll~G-hKrW~LfPp~~p~~lvkv~----~~e~g~~~de 239 (407)
T KOG2130|consen 166 DDLFQYLGEER-RPPYRWFVMGPARSGTSIHIDPLGTSAWNTLLQG-HKRWVLFPPGTPPELVKVT----VDEGGKQPDE 239 (407)
T ss_pred HHHHHhcCccc-CCCceeEEecCCCCCceeEECCcchHHHHHHhhc-cceeEEcCCCCCCCceeec----ccccCCCCcc
Confidence 45566654320 0113499999999999999999999999999998 6889999987533222221 1222234331
Q ss_pred hhhcccccCh---h----hHhhcCCCeeEeecCCCcEEEEcCCcceeeecccccceeeecccccchhh
Q 002854 335 LHELVTQLSP---S----VLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLA 395 (873)
Q Consensus 335 L~h~~t~isP---~----~L~~~GIpv~r~vQ~pGEFVVTfPgaYHsgfn~GfN~aEAVNFA~~dWL~ 395 (873)
. .||++- . .+-.+ -.-..++|.|||-|++--|=+|.++|.-..+|..-|||...-++
T Consensus 240 ~---itwf~~~y~rt~~Pswp~E-~kPIEc~q~pGEt~fVP~GWWHvVlNle~TIAiTqNf~s~eNf~ 303 (407)
T KOG2130|consen 240 I---ITWFSTIYPRTQLPSWPDE-YKPIECLQKPGETMFVPSGWWHVVLNLEPTIAITQNFASKENFP 303 (407)
T ss_pred e---echhhhccccccCCCCccc-cCCceeeecCCceEEecCCeEEEEeccCceeeeeeccccccCCc
Confidence 1 111111 0 01112 22346889999999999999999999999999999999877554
No 15
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=87.73 E-value=1.9 Score=48.17 Aligned_cols=105 Identities=19% Similarity=0.196 Sum_probs=67.2
Q ss_pred cccceEEeeccc-ccccccccCccceeeeeeeeCCcccEEEeCCccHHHHHHHHHhhCchhhccCchhhhhcccccChhh
Q 002854 268 VLVPWLYVGMCF-SSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSV 346 (873)
Q Consensus 268 VttP~LYiGM~f-Stf~WH~ED~~L~SINYlH~GapK~WY~VP~~~aekFE~l~k~~~p~lf~~~pd~L~h~~t~isP~~ 346 (873)
-..-.+|++-.+ ..|++|.++++..-| -.-+.|.|..-++.. + ...+..+ .+-.
T Consensus 113 ~~~~n~Y~tp~g~~g~~~H~D~~dvfvl---Q~~G~K~W~l~~~~~------------~-----~~~~~~~-----~~~~ 167 (319)
T PF08007_consen 113 PVGANAYLTPPGSQGFGPHYDDHDVFVL---QLEGRKRWRLYPPPD------------E-----PAPLYSD-----QPFK 167 (319)
T ss_dssp -EEEEEEEETSSBEESECEE-SSEEEEE---EEES-EEEEEE-SCC------------C-----TTTSSCE-------TT
T ss_pred ccceEEEecCCCCCCccCEECCcccEEE---ECCceeEEEECCCCc------------c-----cccccCC-----CCcc
Confidence 345578999888 589999999876654 345589999987211 0 0000000 0111
Q ss_pred HhhcCCCeeEeecCCCcEEEEcCCcceeeecccccceeeecccccchhhhH
Q 002854 347 LKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHG 397 (873)
Q Consensus 347 L~~~GIpv~r~vQ~pGEFVVTfPgaYHsgfn~GfN~aEAVNFA~~dWL~~g 397 (873)
..+..-|+..++=+||++++.-+|.+|.+.+.|.+++-+++|-++.|..+-
T Consensus 168 ~~~~~~~~~~~~L~pGD~LYlPrG~~H~~~~~~~S~hltv~~~~~t~~dl~ 218 (319)
T PF08007_consen 168 QLEEFEPVEEVVLEPGDVLYLPRGWWHQAVTTDPSLHLTVGFRAPTWADLL 218 (319)
T ss_dssp TCG--STSEEEEE-TT-EEEE-TT-EEEEEESS-EEEEEEEECCEBHHHHH
T ss_pred ccccCceeEEEEECCCCEEEECCCccCCCCCCCCceEEEEeeeCCchhhHH
Confidence 123336788999999999999999999999999999999999999998753
No 16
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=49.16 E-value=8.5 Score=30.51 Aligned_cols=33 Identities=24% Similarity=0.587 Sum_probs=25.8
Q ss_pred cccccccchhcccccc-ccCCcceeccchh-hhcCCC
Q 002854 495 CFSCFYDLHLSAAGCK-CSPDRFACLKHAN-IFCSCE 529 (873)
Q Consensus 495 C~~Ck~~cfLS~V~C~-C~~~~v~CL~Ha~-~lCsC~ 529 (873)
|.+|+...+|..+.|. |. .++|+.|-. +..+|+
T Consensus 1 C~~C~~~~~l~~f~C~~C~--~~FC~~HR~~e~H~C~ 35 (39)
T smart00154 1 CHFCRKKVGLTGFKCRHCG--NLFCGEHRLPEDHDCP 35 (39)
T ss_pred CcccCCcccccCeECCccC--CccccccCCccccCCc
Confidence 7889999999888899 85 689999963 234454
No 17
>COG2461 Uncharacterized conserved protein [Function unknown]
Probab=35.25 E-value=23 Score=41.10 Aligned_cols=43 Identities=26% Similarity=0.641 Sum_probs=35.3
Q ss_pred CCCceecCChhhhcCHHHHHHHHHHhhhhCCeeeecCCCCCCCCC
Q 002854 30 DEAPVFYPTVEEFEDTLGYIAKIRSKAESFGICRIVPPSSWTPPC 74 (873)
Q Consensus 30 ~eaPVF~PT~EEF~DPl~YI~kI~~~AekyGICKIVPP~~WkPp~ 74 (873)
.+.-+||||.-+--++-.| ..|+.+-..+|-+||+|| .|+|.-
T Consensus 198 kEe~Ilypt~~d~~te~ew-~~i~~~~~eigy~~i~p~-~w~p~~ 240 (409)
T COG2461 198 KEENILYPTLLDLLTEGEW-EAIKEQSKEIGYAKIKPP-KWKPKK 240 (409)
T ss_pred hhhhhHHhHHHHhcCHHHH-HHHHhcCcccceEEecCc-cccCcc
Confidence 4677899998877766665 458888999999999999 999963
No 18
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=22.71 E-value=64 Score=33.80 Aligned_cols=44 Identities=27% Similarity=0.525 Sum_probs=33.1
Q ss_pred hhcCCCeeEeecCCCcEEEEcCCcceeeecccccceeeecc-------cccchhhh
Q 002854 348 KAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNV-------APVDWLAH 396 (873)
Q Consensus 348 ~~~GIpv~r~vQ~pGEFVVTfPgaYHsgfn~GfN~aEAVNF-------A~~dWL~~ 396 (873)
....=+++.+.-.+|+++.+-||.||| |.+.++-|| +++.|.+.
T Consensus 111 ~~~d~~~~~i~c~~gDLI~vP~gi~Hw-----Ftlt~~~~f~AvRlF~~~~gWVa~ 161 (181)
T COG1791 111 HSPDGKVYQIRCEKGDLISVPPGIYHW-----FTLTESPNFKAVRLFTEPEGWVAI 161 (181)
T ss_pred ECCCCcEEEEEEccCCEEecCCCceEE-----EEccCCCcEEEEEEeeCCCCceee
Confidence 344458899999999999999999998 555566665 45667653
Done!