Query 002854
Match_columns 873
No_of_seqs 285 out of 697
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 04:12:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002854.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002854hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ox0_A JMJC domain-containing 100.0 2.2E-87 7.7E-92 735.9 19.8 313 28-421 32-345 (381)
2 3dxt_A JMJC domain-containing 100.0 3.1E-85 1.1E-89 711.3 18.2 322 28-431 14-336 (354)
3 3opt_A DNA damage-responsive t 100.0 3.3E-85 1.1E-89 714.4 12.1 337 29-418 11-367 (373)
4 3avr_A Lysine-specific demethy 100.0 2.1E-55 7.1E-60 499.5 16.0 287 239-555 225-524 (531)
5 4ask_A Lysine-specific demethy 100.0 1.2E-50 4.2E-55 454.3 19.5 284 245-556 206-500 (510)
6 2xxz_A Lysine-specific demethy 100.0 6.1E-44 2.1E-48 386.3 10.4 159 240-407 167-330 (332)
7 2wzo_A Transforming growth fac 99.5 6.5E-15 2.2E-19 143.5 3.2 66 802-869 9-75 (146)
8 3kv4_A PHD finger protein 8; e 98.0 4.8E-05 1.7E-09 86.2 14.2 146 272-433 234-382 (447)
9 2ypd_A Probable JMJC domain-co 98.0 1.2E-05 4E-10 89.0 8.6 104 303-406 234-344 (392)
10 3k3o_A PHF8, PHD finger protei 98.0 4.4E-05 1.5E-09 84.6 13.1 146 272-433 150-298 (371)
11 3pua_A GRC5, PHD finger protei 97.9 6.9E-05 2.4E-09 83.5 14.1 144 272-433 177-325 (392)
12 3kv5_D JMJC domain-containing 97.9 0.00011 3.6E-09 84.3 14.7 147 271-433 268-417 (488)
13 3kv9_A JMJC domain-containing 97.9 8.9E-05 3E-09 82.8 13.5 146 272-433 178-326 (397)
14 2yu1_A JMJC domain-containing 97.7 0.00042 1.4E-08 78.7 15.7 143 271-429 198-343 (451)
15 3k2o_A Bifunctional arginine d 97.5 0.00013 4.5E-09 79.9 7.9 119 270-398 173-299 (336)
16 3pur_A Lysine-specific demethy 97.2 0.0019 6.5E-08 74.3 13.3 137 271-425 298-443 (528)
17 4gjz_A Lysine-specific demethy 97.2 0.00075 2.6E-08 67.7 8.8 106 270-389 125-235 (235)
18 3d8c_A Hypoxia-inducible facto 96.0 0.021 7.1E-07 62.5 10.1 112 268-390 182-297 (349)
19 3al5_A HTYW5, JMJC domain-cont 95.7 0.019 6.5E-07 62.4 8.3 111 268-392 166-277 (338)
20 1vrb_A Putative asparaginyl hy 89.2 1.4 4.9E-05 48.0 10.2 115 271-401 143-264 (342)
21 4diq_A Lysine-specific demethy 78.6 8.7 0.0003 44.2 10.7 106 270-398 165-274 (489)
22 2xdv_A MYC-induced nuclear ant 52.5 60 0.002 36.7 10.6 104 269-399 139-247 (442)
23 1wfh_A Zinc finger (AN1-like) 30.3 18 0.00063 30.7 1.4 38 491-530 14-52 (64)
24 1wg2_A Zinc finger (AN1-like) 28.2 22 0.00075 30.3 1.5 37 492-530 15-52 (64)
25 1wfp_A Zinc finger (AN1-like) 27.8 24 0.0008 30.9 1.7 38 491-530 24-62 (74)
26 1wff_A Riken cDNA 2810002D23 p 26.0 25 0.00084 31.5 1.5 37 492-530 25-63 (85)
27 1wfl_A Zinc finger protein 216 24.0 33 0.0011 30.0 1.9 36 492-529 25-61 (74)
28 2b8m_A Hypothetical protein MJ 22.3 63 0.0022 28.3 3.6 43 358-400 69-113 (117)
No 1
>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A*
Probab=100.00 E-value=2.2e-87 Score=735.94 Aligned_cols=313 Identities=35% Similarity=0.619 Sum_probs=275.5
Q ss_pred CCCCCceecCChhhhcCHHHHHHHHHHh-hhhCCeeeecCCCCCCCCCCCccccccccccccccchhhhhhcccccchhh
Q 002854 28 IIDEAPVFYPTVEEFEDTLGYIAKIRSK-AESFGICRIVPPSSWTPPCPLKAKNIWENAKFSTRIQQIDLLQNREPMRKK 106 (873)
Q Consensus 28 ~i~eaPVF~PT~EEF~DPl~YI~kI~~~-AekyGICKIVPP~~WkPp~~l~~k~i~~~~kF~TriQ~V~~lq~r~p~~k~ 106 (873)
.-.++||||||+|||+||++||++|+++ |++|||||||||++|+|++.+++ +++++|+++||++...+.+..
T Consensus 32 ~~~~iPVF~PT~EEF~Df~~YI~kIe~~gA~~~GI~KIIPP~~W~p~~~~~~---~~~~~i~~piqQ~~~g~~g~~---- 104 (381)
T 2ox0_A 32 PSARIMTFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKPRASYDD---IDDLVIPAPIQQLVTGQSGLF---- 104 (381)
T ss_dssp TTCCCEEECCCHHHHSCHHHHHHHHHHTTGGGGSEEEECCCTTCCSCSCSTT---CTTCEESSCEEEEEEEETTEE----
T ss_pred CCCCCceEcCCHHHHhCHHHHHHHHHhccccccCceeecCCccCCCccccch---hhhcccCCcceeeecCCCccc----
Confidence 3458999999999999999999999998 68999999999999999997753 367899999999875543311
Q ss_pred hhhhhhhhcccccccccccCCCCCccccccccccccccccCCCCCHHHHHHHHHHHHHhhhCCCCCCCCCcCCccccccC
Q 002854 107 IRSRKRKRRRQSRMGSTRRNANSSSEANAAETDEKFGFQSGPDLTLEGFQKYAQNFKECYFGMNDSKEDVKSDGFEHKRL 186 (873)
Q Consensus 107 ~~~~k~k~~~~~~~g~~~r~~~s~s~~~~~~~~e~fgF~~g~~~tL~~F~~~A~~fk~~~f~~~~~~~~~~~~~~~~~~~ 186 (873)
..|+++ ++.|||++|+++|+.++. ..+ .
T Consensus 105 ---------------------------------~~~~~~-~k~~tl~~f~~~a~~~~~---~~p---------------~ 132 (381)
T 2ox0_A 105 ---------------------------------TQYNIQ-KKAMTVREFRKIANSDKY---CTP---------------R 132 (381)
T ss_dssp ---------------------------------EEEEEE-CCCEEHHHHHHHHHSTTT---SCC---------------C
T ss_pred ---------------------------------cccccc-ccccCHHHHHHHhccccc---CCC---------------c
Confidence 123444 478999999999997642 111 1
Q ss_pred CCCHHHHHHHhhhhccCCCCceeeeecCCCCCCCcCCCCCCCCCCCCCCchhhhhccCCCCCCCCCCCCCcccccCCCCC
Q 002854 187 EPSVVDIEGEYWRIIERPTDEVEVYYGADLETGAFASGFPKASSLGTESDLDQYAMSGWNLNNLPRLPGSVLAFEGSDIS 266 (873)
Q Consensus 187 ~ps~e~vE~efWr~V~~~~~~veV~YGaDl~ss~~GSgFP~~~~~~~~~~~~~y~~~~WNLnnLp~l~gSLL~~~~~~I~ 266 (873)
.++.++||++|||+|+. ++|+||+|++++.|+++ .++|||+|||.+.++||++.+.+|+
T Consensus 133 ~~~~~~lE~~fWr~v~~----~~~~YgaD~~gS~f~~~-----------------~~~WNL~~Lp~ll~~ll~~~~~~I~ 191 (381)
T 2ox0_A 133 YSEFEELERKYWKNLTF----NPPIYGADVNGTLYEKH-----------------VDEWNIGRLRTILDLVEKESGITIE 191 (381)
T ss_dssp CSSHHHHHHHHHHHTTS----SCCEEEEEEECCCSCTT-----------------CCSSCTTCCCCGGGHHHHHHCCCCB
T ss_pred cCCHHHHHHHHHhhCCc----CCceeecCCCcccCCCC-----------------CCCCchhhhhhHHHHHHHhcCCCCC
Confidence 24689999999999984 57899999986555432 3699999999999999999999999
Q ss_pred CcccceEEeecccccccccccCccceeeeeeeeCCcccEEEeCCccHHHHHHHHHhhCchhhccCchhhhhcccccChhh
Q 002854 267 GVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSV 346 (873)
Q Consensus 267 GVttP~LYiGM~fStf~WH~ED~~L~SINYlH~GapK~WY~VP~~~aekFE~l~k~~~p~lf~~~pd~L~h~~t~isP~~ 346 (873)
|||+||||+||+||+||||+||++||||||+|+|+||+||+||++++++||++|++.+|+++.+|++||+|++++++|+.
T Consensus 192 GVn~P~LYiGm~~S~f~WH~ED~~L~SINYlH~GapK~WY~VP~~~~~kfE~l~~~~~P~~~~~~~~~L~h~~~~isP~~ 271 (381)
T 2ox0_A 192 GVNTPYLYFGMWKTSFAWHTEDMDLYSINYLHFGEPKSWYSVPPEHGKRLERLAKGFFPGSAQSCEAFLRHKMTLISPLM 271 (381)
T ss_dssp TTTSCEEEEECTTCEEEEECCGGGCEEEEEEEEESCEEEEEECGGGHHHHHHHHHHHSHHHHHHCTTGGGGSCEEECHHH
T ss_pred CcccceEEeeccccCcCceecCCcceeeEEeecCCceEEEecCHHHHHHHHHHHHHhChhhhhcchHHhhccccccCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCeeEeecCCCcEEEEcCCcceeeecccccceeeecccccchhhhHHHHHHHHhhccCCCCccHHHHHHH
Q 002854 347 LKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQHRKTSLSHDKLLFG 421 (873)
Q Consensus 347 L~~~GIpv~r~vQ~pGEFVVTfPgaYHsgfn~GfN~aEAVNFA~~dWL~~g~~a~e~y~~~~r~~~fS~e~LL~~ 421 (873)
|+++||||++++|+|||||||||+|||+|||+||||+||||||+++|+++|..|.++++.. ..-.|+|+.++-+
T Consensus 272 L~~~GIpv~r~vQ~pGEfViTfP~aYH~gfn~GfN~aEAvNFA~~~Wl~~g~~a~~c~c~~-~~v~i~~d~~~~~ 345 (381)
T 2ox0_A 272 LKKYGIPFDKVTQEAGEFMITFPYGYHAGFNHGFNCAESTNFATRRWIEYGKQAVLCSCRK-DMVKISMDVFVRK 345 (381)
T ss_dssp HHHTTCCCEEEEECTTCEEEECTTCEEEEEECSSEEEEEEEECCTTHHHHHHHCCCCCSST-TCCCCCCHHHHHH
T ss_pred HHHCCCceEEEEecCCCEEEECCCcEEEeecCcccHHHHhccCcHHHHHHhHhhhhccccC-CceeecHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999876543 4456689888654
No 2
>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 4hon_A* 4hoo_A 2w2i_A*
Probab=100.00 E-value=3.1e-85 Score=711.26 Aligned_cols=322 Identities=34% Similarity=0.608 Sum_probs=278.6
Q ss_pred CCCCCceecCChhhhcCHHHHHHHHHHh-hhhCCeeeecCCCCCCCCCCCccccccccccccccchhhhhhcccccchhh
Q 002854 28 IIDEAPVFYPTVEEFEDTLGYIAKIRSK-AESFGICRIVPPSSWTPPCPLKAKNIWENAKFSTRIQQIDLLQNREPMRKK 106 (873)
Q Consensus 28 ~i~eaPVF~PT~EEF~DPl~YI~kI~~~-AekyGICKIVPP~~WkPp~~l~~k~i~~~~kF~TriQ~V~~lq~r~p~~k~ 106 (873)
...++||||||+|||+||.+||++|+++ |+++||||||||++|+|+...+ ++ ++++++++||++...+.+..+
T Consensus 14 ~~~~ipvF~PT~eEF~df~~Yi~~ie~~Ga~~~Gi~KIIPP~~W~~r~~~~--~~-~~~~i~~pi~q~~~g~~G~~~--- 87 (354)
T 3dxt_A 14 PNCNIMIFHPTKEEFNDFDKYIAYMESQGAHRAGLAKIIPPKEWKARETYD--NI-SEILIATPLQQVASGRAGVFT--- 87 (354)
T ss_dssp TTCCCEEECCCTTGGGCHHHHHHHHHHTTGGGGSEEEECCCTTCCSSSCST--TC-TTCEESSCEEEEEEEETTEEE---
T ss_pred CCCCcceecCCHHHHhCHHHHHHHHHhccccccCcccccCcccccCccccc--ch-hcccccCCceeeecCCCceEE---
Confidence 4567999999999999999999999998 5699999999999999987653 33 578899999987654433211
Q ss_pred hhhhhhhhcccccccccccCCCCCccccccccccccccccCCCCCHHHHHHHHHHHHHhhhCCCCCCCCCcCCccccccC
Q 002854 107 IRSRKRKRRRQSRMGSTRRNANSSSEANAAETDEKFGFQSGPDLTLEGFQKYAQNFKECYFGMNDSKEDVKSDGFEHKRL 186 (873)
Q Consensus 107 ~~~~k~k~~~~~~~g~~~r~~~s~s~~~~~~~~e~fgF~~g~~~tL~~F~~~A~~fk~~~f~~~~~~~~~~~~~~~~~~~ 186 (873)
.|+ ...+.||+.+|+++|+..+ |.++.
T Consensus 88 ----------------------------------~~~-~~~k~~t~~~f~~~a~~~~---~~~p~--------------- 114 (354)
T 3dxt_A 88 ----------------------------------QYH-KKKKAMTVGEYRHLANSKK---YQTPP--------------- 114 (354)
T ss_dssp ----------------------------------EEE-EECCCEEHHHHHHHHTSTT---TSCCC---------------
T ss_pred ----------------------------------Eee-eccCccCHHHHHHHHhhhh---ccCCC---------------
Confidence 112 2347899999999998532 33332
Q ss_pred CCCHHHHHHHhhhhccCCCCceeeeecCCCCCCCcCCCCCCCCCCCCCCchhhhhccCCCCCCCCCCCCCcccccCCCCC
Q 002854 187 EPSVVDIEGEYWRIIERPTDEVEVYYGADLETGAFASGFPKASSLGTESDLDQYAMSGWNLNNLPRLPGSVLAFEGSDIS 266 (873)
Q Consensus 187 ~ps~e~vE~efWr~V~~~~~~veV~YGaDl~ss~~GSgFP~~~~~~~~~~~~~y~~~~WNLnnLp~l~gSLL~~~~~~I~ 266 (873)
..+.++||++||+.+... .|+||||++ ||+||.. .++|||+|||.+.++||++.+.+|+
T Consensus 115 ~~~~~~lE~~fW~~~~~~----~p~YgaD~~----gS~F~~~-------------~~~WNL~~L~~~~~~Ll~~~~~~I~ 173 (354)
T 3dxt_A 115 HQNFEDLERKYWKNRIYN----SPIYGADIS----GSLFDEN-------------TKQWNLGHLGTIQDLLEKECGVVIE 173 (354)
T ss_dssp CSSHHHHHHHHHHHGGGC----CCEEEEEEE----CCCSCTT-------------CCSSCTTSSCCHHHHHHHHHCCCCC
T ss_pred CCCHHHHHHHHhhhcccC----CceeeecCC----CcccCCC-------------cchhhhhhccchhHHHHhhcCCCCC
Confidence 135789999999988743 589999997 7888753 3699999999999999999999999
Q ss_pred CcccceEEeecccccccccccCccceeeeeeeeCCcccEEEeCCccHHHHHHHHHhhCchhhccCchhhhhcccccChhh
Q 002854 267 GVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSV 346 (873)
Q Consensus 267 GVttP~LYiGM~fStf~WH~ED~~L~SINYlH~GapK~WY~VP~~~aekFE~l~k~~~p~lf~~~pd~L~h~~t~isP~~ 346 (873)
|||+||||+||+||+||||+||++||||||+|+|+||+||+||++++++||++|++.+|++++.|++||+|++++++|+.
T Consensus 174 GVntP~LYiGm~~Stf~WH~ED~~L~SINYlH~GapK~WY~VP~~~~~kfE~l~k~~~p~~~~~c~~fL~h~~~lisP~~ 253 (354)
T 3dxt_A 174 GVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHLGEPKTWYVVPPEHGQRLERLARELFPGSSRGCGAFLRHKVALISPTV 253 (354)
T ss_dssp CCCCCEEEEECTTCEEEEECCGGGCEEEEEEEEESCEEEEEECGGGHHHHHHHHHHHSHHHHHHCTTGGGGCCEEECHHH
T ss_pred CccceeeeeccccCCCcceecCCcceEEEEEecCCceEEEEeCHHHHHHHHHHHHHhCchhhhhcHHHHhcCcccCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCeeEeecCCCcEEEEcCCcceeeecccccceeeecccccchhhhHHHHHHHHhhccCCCCccHHHHHHHHHHHH
Q 002854 347 LKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQHRKTSLSHDKLLFGSVQAA 426 (873)
Q Consensus 347 L~~~GIpv~r~vQ~pGEFVVTfPgaYHsgfn~GfN~aEAVNFA~~dWL~~g~~a~e~y~~~~r~~~fS~e~LL~~~A~~~ 426 (873)
|+++||||++++|+|||||||||+|||+|||+||||+||||||+++||++|+.|.++.+... ...|+||.++-. .+-.
T Consensus 254 L~~~GIpv~~~vQ~pGEfViTfP~aYH~gfn~Gfn~aEAvNFA~~~Wl~~g~~A~~C~C~~~-~v~i~~d~~~~~-~~~~ 331 (354)
T 3dxt_A 254 LKENGIPFNRITQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDYGKMASQCSCGEA-RVTFSMDAFVRI-LQPE 331 (354)
T ss_dssp HHHTTCCCEEEEECTTCEEEECTTCEEEEEESSSEEEEEEEECCGGGHHHHHHCCCCCSSSC-CCCHHHHHHHHH-HCHH
T ss_pred HHHCCCceEEEEeCCCcEEEECCCceEEEeeccccHhHhhccCcHHHHHhhhhcccccccCc-cceecHHHHHHh-hCHH
Confidence 99999999999999999999999999999999999999999999999999999998877643 456899888743 3333
Q ss_pred HHHHH
Q 002854 427 IKALW 431 (873)
Q Consensus 427 ~~~l~ 431 (873)
...+|
T Consensus 332 ~~~~w 336 (354)
T 3dxt_A 332 RYDLW 336 (354)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44455
No 3
>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A*
Probab=100.00 E-value=3.3e-85 Score=714.38 Aligned_cols=337 Identities=31% Similarity=0.584 Sum_probs=235.2
Q ss_pred CCCCceecCChhhhcCHHHHHHHHHHhhhhCCeeeecCCCCCCCCCCCcc-ccccccccccccchhh-------hhhccc
Q 002854 29 IDEAPVFYPTVEEFEDTLGYIAKIRSKAESFGICRIVPPSSWTPPCPLKA-KNIWENAKFSTRIQQI-------DLLQNR 100 (873)
Q Consensus 29 i~eaPVF~PT~EEF~DPl~YI~kI~~~AekyGICKIVPP~~WkPp~~l~~-k~i~~~~kF~TriQ~V-------~~lq~r 100 (873)
.+++||||||+|||+||.+||++|+++|+++||||||||++|+|++.... .+.+++++++++|||. .++||.
T Consensus 11 ~~~~pVF~PT~eeF~dF~~yi~~i~~~g~~~Gi~KVIPPkeW~~~~~~~~~~~~l~~~~i~~PI~Q~~~G~~G~~~~~ni 90 (373)
T 3opt_A 11 VGGVPVFKPTYEQFEDFYAYCKAINKYGMKSGVVKVIPPKEWKDKLDLPYSAETLQKIKIKSPIQQHISGNKGLFMVQNV 90 (373)
T ss_dssp ESSSEEECCCHHHHTCHHHHHHTTHHHHTTSSEEEECCCHHHHTTSCSSCCHHHHHHCEEESCEEEEEEESSSEEEEEEE
T ss_pred cCCCCeeCCCHHHHhCHHHHHHHHHHhccccCeEEEeCchhhhhcccCCCcHhHHhcCcCCCCcEEEecCCCceEEEeee
Confidence 47899999999999999999999999999999999999999999974221 2346789999999984 444555
Q ss_pred ccchhhhhhh------------hhhhcccccccccccCCCCCccccccccccccccccCCCCCHHHHHHHHHHHHHhhhC
Q 002854 101 EPMRKKIRSR------------KRKRRRQSRMGSTRRNANSSSEANAAETDEKFGFQSGPDLTLEGFQKYAQNFKECYFG 168 (873)
Q Consensus 101 ~p~~k~~~~~------------k~k~~~~~~~g~~~r~~~s~s~~~~~~~~e~fgF~~g~~~tL~~F~~~A~~fk~~~f~ 168 (873)
++.++....+ ++++|+.++.+...+.. ..... ..+..+++++|+++++.|+.+
T Consensus 91 e~~r~~~~~q~k~l~~~~~~p~~~~~~~~~~~~~~~~~~------~~~~~------~~~~~~~~~~~~~~~~~~~~~--- 155 (373)
T 3opt_A 91 EKNKTYNIIQWKDLSKDYVPPEDPKARRNSRKGSVSKST------KLKLK------NFESSFNIDDFEQFRTEYTID--- 155 (373)
T ss_dssp ECSCEEEHHHHHHHTTSSCCCCC------------------------------------CCCCHHHHHHHTTTSSCC---
T ss_pred ccccccCHHHHHHhhhhcCCCcccccccccccccccccc------ccccc------ccccccchHHHHHHHHhhccc---
Confidence 5443332221 12222333222211110 00000 012478999998865543221
Q ss_pred CCCCCCCCcCCccccccCCCCHHHHHHHhhhhccCCCCceeeeecCCCCCCCcCCCCCCCCCCCCCCchhhhhccCCCCC
Q 002854 169 MNDSKEDVKSDGFEHKRLEPSVVDIEGEYWRIIERPTDEVEVYYGADLETGAFASGFPKASSLGTESDLDQYAMSGWNLN 248 (873)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~ps~e~vE~efWr~V~~~~~~veV~YGaDl~ss~~GSgFP~~~~~~~~~~~~~y~~~~WNLn 248 (873)
. ++.. .+++.++||++||++|.. .+|+||||+ .||+||.. .++|||+
T Consensus 156 --~------~~~~----~~~~~~~lE~~yW~~~~~----~~p~YgaD~----~GS~F~~~-------------~~~WNL~ 202 (373)
T 3opt_A 156 --L------SDFQ----NTERLKFLEEYYWKTLNF----TTPMYGADT----PGSIFPEG-------------LNVWNVA 202 (373)
T ss_dssp --C------TTSS----CHHHHHHHHHHHHHTTTT----SCCEEEEEE----ECCCSCTT-------------CCSSCTT
T ss_pred --h------hhcc----CcchHHHHHHHHHHhccC----CCceEecCC----CCCCcCCC-------------CCccChh
Confidence 0 1111 024678999999999985 368999997 58999853 4799999
Q ss_pred CCCCCCCCcccccCCCCCCcccceEEeecccccccccccCccceeeeeeeeCCcccEEEeCCccHHHHHHHHHhhCchhh
Q 002854 249 NLPRLPGSVLAFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLF 328 (873)
Q Consensus 249 nLp~l~gSLL~~~~~~I~GVttP~LYiGM~fStf~WH~ED~~L~SINYlH~GapK~WY~VP~~~aekFE~l~k~~~p~lf 328 (873)
||| +||+|++.+|+|||+||||+||+||+||||+||++||||||+|+|+||+||+||++++++||++|++.+|+++
T Consensus 203 ~Lp----~lL~~l~~~I~GVntP~LYvGm~~Stf~WH~ED~~L~SINYlH~GapK~WY~VP~~~~~kfE~l~k~~~p~~~ 278 (373)
T 3opt_A 203 KLP----NILDHMETKVPGVNDSYLYAGLWKASFSWHLEDQDLYSINYIHFGAPKQWYSIPQEDRFKFYKFMQEQFPEEA 278 (373)
T ss_dssp SCC------------------CCEEEEECTTCEEEEECCGGGCEEEEEEEEESCEEEEECCGGGHHHHHHHHHHSSHHHH
T ss_pred hhh----hHHHHhcccCCCcchhheeeccccCCcceeecCCcceeEEEeecCCCeEEEEeCHHHHHHHHHHHHHhChhhh
Confidence 999 4899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchhhhhcccccChhhHhhcCCCeeEeecCCCcEEEEcCCcceeeecccccceeeecccccchhhhHHHHHHHHhhcc
Q 002854 329 EEQPDLLHELVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQH 408 (873)
Q Consensus 329 ~~~pd~L~h~~t~isP~~L~~~GIpv~r~vQ~pGEFVVTfPgaYHsgfn~GfN~aEAVNFA~~dWL~~g~~a~e~y~~~~ 408 (873)
.+|++||+|++++++|+.|+++||||++++|+|||||||||+|||+|||+||||+||||||+++||++|+.|..+.+. .
T Consensus 279 ~~c~~fL~h~~~lisP~~L~~~GIpv~r~vQ~pGEfViTfP~aYH~gfn~Gfn~aEAvNFA~~~Wl~~g~~a~~C~C~-~ 357 (373)
T 3opt_A 279 KNCPEFLRHKMFLASPKLLQENGIRCNEIVHHEGEFMITYPYGYHAGFNYGYNLAESVNFALEEWLPIGKKAGKCHCI-S 357 (373)
T ss_dssp SSCSSCTTTSCEEECHHHHHTTTCCCEEEEECTTCEEEECTTCCEEEEESSSEEEEEEEECCC-----------------
T ss_pred hhCHHHhhCCcccCCHHHHHhcCCceEEEEECCCCEEEECCCceEEEEecCccHHHHHccCcHHHHHhhccCccCccc-C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999988654 2
Q ss_pred CCCCccHHHH
Q 002854 409 RKTSLSHDKL 418 (873)
Q Consensus 409 r~~~fS~e~L 418 (873)
..-.|++++|
T Consensus 358 d~v~i~~~~~ 367 (373)
T 3opt_A 358 DSVEIDVKKL 367 (373)
T ss_dssp ----------
T ss_pred CcceecHHHH
Confidence 3334555555
No 4
>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A*
Probab=100.00 E-value=2.1e-55 Score=499.50 Aligned_cols=287 Identities=18% Similarity=0.148 Sum_probs=223.8
Q ss_pred hhhccCCCCCCCCC-----CCCCcccccCCCCCCcccceEEeecccccccccccCccceeeeeeeeCCcccEEEeCCccH
Q 002854 239 QYAMSGWNLNNLPR-----LPGSVLAFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHA 313 (873)
Q Consensus 239 ~y~~~~WNLnnLp~-----l~gSLL~~~~~~I~GVttP~LYiGM~fStf~WH~ED~~L~SINYlH~GapK~WY~VP~~~a 313 (873)
.+..+.|||++||. ..||||+|++..|+|||+||||+||+||+||||+||++|+||||||+|++|+||+||++++
T Consensus 225 ~w~~ql~el~kLP~~lr~~~~gslL~~~~~~I~Gvn~pqLYig~~gS~t~~H~E~~~l~SiNynhggg~~~Wy~VP~e~~ 304 (531)
T 3avr_A 225 KWKLQLHELTKLPAFVRVVSAGNLLSHVGHTILGMNTVQLYMKVPGSRTPGHQENNNFCSVNINIGPGDCEWFVVPEGYW 304 (531)
T ss_dssp TTHHHHHHGGGSCGGGCSSCTTCGGGGSCSCCBTTSSCEEEEECTTCEEEEECCGGGCEEEEEEEEESCEEEEEECGGGH
T ss_pred hhHHHHHHHHhCCHHHcccCccchhhhcCCCCCCcChhheEeecCcccccceecCCcceeeEeecCCCCeEEEEeCHHHH
Confidence 35567889999997 4899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCchhhccCchhhhhcccccChhhHhhcCCCeeEeecCCCcEEEEcCCcceeeecccccceeeecccccch
Q 002854 314 STLEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDW 393 (873)
Q Consensus 314 ekFE~l~k~~~p~lf~~~pd~L~h~~t~isP~~L~~~GIpv~r~vQ~pGEFVVTfPgaYHsgfn~GfN~aEAVNFA~~dW 393 (873)
++||+++++... ++++ ..+|++|+.|.++||||||++|+|||||||||||||||||+|||++||||||+++|
T Consensus 305 ~k~e~l~~k~~~-------~~~~-~~~~~~p~~L~~~gIPvyr~vQkpGd~Vi~~PgayH~v~n~G~~~n~awN~a~~~~ 376 (531)
T 3avr_A 305 GVLNDFCEKNNL-------NFLM-GSWWPNLEDLYEANVPVYRFIQRPGDLVWINAGTVHWVQAIGWCNNIAWNVGPLTA 376 (531)
T ss_dssp HHHHHHHHHTTC-------CTTT-SCBCCCHHHHHHTTCCCEEEEECTTCEEEECTTCEEEEEESSSEEEEEEEECCSSH
T ss_pred HHHHHHHHHcCC-------Chhh-ceeecCHHHHHhCCCCeEEEEECCCCEEEECCCceEEEEecceeeeeEEEeccCch
Confidence 999999988743 3443 45789999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhh---ccCCCCccHHHHHHHHHHHHHHHHHHHhhhcccCCCccchhhccccchhhHHHHHH-HHHHHHh
Q 002854 394 LAHGQQAVELYSE---QHRKTSLSHDKLLFGSVQAAIKALWELSVLQKKTPGNRKWKDACGKDGVLTKAIKT-RVQMKKE 469 (873)
Q Consensus 394 L~~g~~a~e~y~~---~~r~~~fS~e~LL~~~A~~~~~~l~el~ll~k~~~~~~~~~~~c~~~~il~~~~k~-ri~~E~~ 469 (873)
++++. |+++|+. .+..++|||++|+|++|+.... ..+....+.+.|+ ...++. +...+..
T Consensus 377 ~q~~~-A~e~y~~Nk~~~~~sivp~~~L~wn~a~~~~~----------~d~~l~~~ik~~L-----~rsl~~~~~~~~~l 440 (531)
T 3avr_A 377 CQYKL-AVERYEWNKLQSVKSIVPMVHLSWNMARNIKV----------SDPKLFEMIKYCL-----LRTLKQCQTLREAL 440 (531)
T ss_dssp HHHHH-HHHHHHHHHHHTCCCSSCHHHHHHHHHHHCCC----------CCHHHHHHHHHHH-----HHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHhhhccCCCCCCHHHHHHHHHhhhhc----------ccHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 99975 7777754 4558999999999999985210 0111112222221 111221 1111110
Q ss_pred hcccCchhhhhhhcccccCCccccccccccccchhccccccc----cCCcceeccchhhhcCCCCCceEEEEecCHHHHH
Q 002854 470 GLQKLPSYFKLQKMEIDFDLKTERECFSCFYDLHLSAAGCKC----SPDRFACLKHANIFCSCEIDHRFVILRYSTDELN 545 (873)
Q Consensus 470 ~~~~l~~~~~~~k~~~~~d~~~er~C~~Ck~~cfLS~V~C~C----~~~~v~CL~Ha~~lCsC~~~~~~LlyRYt~~EL~ 545 (873)
... +..+ ........++.+.|..|+++||++.+.|.. ....++|++|+...|.| .++.+++|||+++||.
T Consensus 441 ~~~----g~~i-~~~~~~~~~~~~~C~~C~~~lFn~~~v~~~~~~~~~~~v~C~~Ca~~~~~~-l~~~~v~~ry~~eeL~ 514 (531)
T 3avr_A 441 IAA----GKEI-IWHGRTKEEPAHYCSICEVEVFDLLFVTNESNSRKTYIVHCQDCARKTSGN-LENFVVLEQYKMEDLM 514 (531)
T ss_dssp HHT----TCCE-EECCCCTTCCCEECTTTCCEECSEEEEEECTTCSSEEEEECHHHHHHHCTT-CTTCEEEECSCHHHHH
T ss_pred HhC----CCEE-EeccccCCCCCeeccccchhheeeEEEEecCCCCCCCCcCChhhhhhcCcc-ccceEEEEEcCHHHHH
Confidence 100 1111 111222235789999999999999988742 12457999999876544 5678999999999999
Q ss_pred HHHHHHHhch
Q 002854 546 TLVEALEGGL 555 (873)
Q Consensus 546 ~lv~~le~~~ 555 (873)
+++++|....
T Consensus 515 ~~yd~f~~~~ 524 (531)
T 3avr_A 515 QVYDQFTLAP 524 (531)
T ss_dssp HHHHTCCCCC
T ss_pred HHHHheEecC
Confidence 9999987653
No 5
>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* 4eyu_A* 4ez4_A* 4ezh_A*
Probab=100.00 E-value=1.2e-50 Score=454.32 Aligned_cols=284 Identities=20% Similarity=0.190 Sum_probs=220.9
Q ss_pred CCCCCCCCC-----CCCcccccCCCCCCcccceEEeecccccccccccCccceeeeeeeeCCcccEEEeCCccHHHHHHH
Q 002854 245 WNLNNLPRL-----PGSVLAFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKA 319 (873)
Q Consensus 245 WNLnnLp~l-----~gSLL~~~~~~I~GVttP~LYiGM~fStf~WH~ED~~L~SINYlH~GapK~WY~VP~~~aekFE~l 319 (873)
.+|++||.. .|+||+|++..|+|||+||||+||+||+|+||+||++|+||||||+|++|+||+||++++++||++
T Consensus 206 ~eL~kLP~flr~~~~gslLs~l~~~I~GVNtpqLYigm~gS~t~wH~Ed~~l~SINynhggg~c~WY~VP~e~~~k~e~l 285 (510)
T 4ask_A 206 QELLKLPAFMRVTSTGNMLSHVGHTILGMNTVQLYMKVPGSRTPGHQENNNFCSVNINIGPGDCEWFAVHEHYWETISAF 285 (510)
T ss_dssp HHGGGSCGGGSSSCTTBGGGGSSSCCTTTTSCEEEEECTTCEEEEECCGGGCEEEEEEEEESCEEEEEECGGGHHHHHHH
T ss_pred HHHhhCcHHhCcCCCCchhhhCCCcCCCcChhheEEccccccccceecCCcceeEEEeecCCceeEEEECHHHHHHHHHH
Confidence 446777764 489999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCchhhccCchhhhhcccccChhhHhhcCCCeeEeecCCCcEEEEcCCcceeeecccccceeeecccccch--hhhH
Q 002854 320 MRKHLPDLFEEQPDLLHELVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDW--LAHG 397 (873)
Q Consensus 320 ~k~~~p~lf~~~pd~L~h~~t~isP~~L~~~GIpv~r~vQ~pGEFVVTfPgaYHsgfn~GfN~aEAVNFA~~dW--L~~g 397 (873)
+++.. +++++. .+|++|+.|+++||||||++|+|||||||||||||||+|.||++++|||||+++| ++.+
T Consensus 286 ~~k~~-------~d~l~~-~~~pspe~L~kagIPvyr~iQkPGdfVit~PgtyH~Vqs~Gf~~niaWNvap~t~~qlqlA 357 (510)
T 4ask_A 286 CDRHG-------VDYLTG-SWWPILDDLYASNIPVYRFVQRPGDLVWINAGTVHWVQATGWCNNIAWNVGPLTAYQYQLA 357 (510)
T ss_dssp HHHTT-------CCTTTS-CBCCCHHHHHHTTCCCEEEEECTTCEEEECTTCEEEEEESSSEEEEEEEECBSSHHHHHHH
T ss_pred HHHhC-------cchhhc-cccCCHHHHHhCCCCeEEEEECCCCEEEECCCceEEEEecCeeeeeEEEecCCCHHHHHHH
Confidence 99865 456643 5788999999999999999999999999999999999999999999999999986 5667
Q ss_pred HHHHHHHhhccCCCCccHHHHHHHHHHHHHHHHHHHhhhcccCCCccchhhccccchhhHHHHHHHHHHHHhhcccCchh
Q 002854 398 QQAVELYSEQHRKTSLSHDKLLFGSVQAAIKALWELSVLQKKTPGNRKWKDACGKDGVLTKAIKTRVQMKKEGLQKLPSY 477 (873)
Q Consensus 398 ~~a~e~y~~~~r~~~fS~e~LL~~~A~~~~~~l~el~ll~k~~~~~~~~~~~c~~~~il~~~~k~ri~~E~~~~~~l~~~ 477 (873)
.++.++|+..++.++|||++|+|+||++.... .++..+..+.| |...++. .+++.+.... .+
T Consensus 358 ~e~y~~n~~~~~~SivPm~~L~Wn~Ar~~k~~----------d~~l~~liK~~-----L~rSL~~-~~~~~d~~~~--~g 419 (510)
T 4ask_A 358 LERYEWNEVKNVKSIVPMIHVSWNVARTVKIS----------DPDLFKMIKFC-----LLQSMKH-CQVQRESLVR--AG 419 (510)
T ss_dssp HHHHHHHHHTTCCCSSCHHHHHHHHHHHCCCC----------CHHHHHHHHHH-----HHHHHHH-HHHHHHHHHH--HT
T ss_pred HHHHHHHHHhCcCcccChHHHHHHHHhhhhcc----------CHHHHHHHHHH-----HHHHHHH-HHHHHHHHHh--CC
Confidence 78888899999999999999999999863210 00011112222 2233332 2222211110 01
Q ss_pred hhhhhcccccCCccccccccccccchhcccccccc----CCcceeccchhhhcCCCCCceEEEEecCHHHHHHHHHHHHh
Q 002854 478 FKLQKMEIDFDLKTERECFSCFYDLHLSAAGCKCS----PDRFACLKHANIFCSCEIDHRFVILRYSTDELNTLVEALEG 553 (873)
Q Consensus 478 ~~~~k~~~~~d~~~er~C~~Ck~~cfLS~V~C~C~----~~~v~CL~Ha~~lCsC~~~~~~LlyRYt~~EL~~lv~~le~ 553 (873)
.++ +..++...+..+.|..|...+|.-...-.-+ ...++|+.||..... ...+++++.||+++||.++++.|..
T Consensus 420 ~~i-~~~~~~~~~~~~~C~~C~~evFn~l~v~~~~~~~~~~~v~C~~Ca~~~~~-~~~~~~vl~~y~~~~L~~iyD~f~l 497 (510)
T 4ask_A 420 KKI-AYQGRVKDEPAYYCNECDVEVFNILFVTSENGSRNTYLVHCEGCARRRSA-GLQGVVVLEQYRTEELAQAYDAFTL 497 (510)
T ss_dssp CCE-EECCCCTTCCCEECTTTCCEECSEEEEEECC----CEEEECHHHHHHSTT-TTTTCEEEESSCHHHHHHHHHHCCC
T ss_pred CEE-eecCcCCCCcccccCCCCeEEEEEEEEEecCCCCCccceEChHhhhhcCC-CcceEEEEEEccHHHHHHHHhCeEe
Confidence 111 2233333345689999999999988443221 134799999987643 5778999999999999999999986
Q ss_pred chh
Q 002854 554 GLD 556 (873)
Q Consensus 554 ~~~ 556 (873)
...
T Consensus 498 ~~~ 500 (510)
T 4ask_A 498 APA 500 (510)
T ss_dssp CC-
T ss_pred ccC
Confidence 543
No 6
>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens}
Probab=100.00 E-value=6.1e-44 Score=386.31 Aligned_cols=159 Identities=25% Similarity=0.218 Sum_probs=139.7
Q ss_pred hhccCCCCCCCCCC-----CCCcccccCCCCCCcccceEEeecccccccccccCccceeeeeeeeCCcccEEEeCCccHH
Q 002854 240 YAMSGWNLNNLPRL-----PGSVLAFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHAS 314 (873)
Q Consensus 240 y~~~~WNLnnLp~l-----~gSLL~~~~~~I~GVttP~LYiGM~fStf~WH~ED~~L~SINYlH~GapK~WY~VP~~~ae 314 (873)
+...-++|+.||.. .++||+|++..|+|||+||||+||+||+||||+||++|+||||||+|++|+||+||+++++
T Consensus 167 w~~q~~el~kLP~~lr~~~~gslL~~~~~~I~Gvn~pqLYig~~gS~t~~H~Ed~~l~SiNynhgp~~~~Wy~VP~e~~~ 246 (332)
T 2xxz_A 167 WKPQLQELLKLPAFMRVTSTGNMLSHVGHTILGMNTVQLYMKVPGSRTPGHQENNNFCSVNINIGPGDCEWFAVHEHYWE 246 (332)
T ss_dssp HHHHHHHHTTSCGGGCTTTTCCCSEETTEECCCTTSEEEEEECTTCEEEEECCGGGCEEEEEEEEESCEEEEEECGGGHH
T ss_pred hHHHHHHHhhCcHhhcccCccchhhhcCCcCCCcChhheEeecCcccccceecCCcceeEEeecCCCceEEEEECHHHHH
Confidence 33444568899865 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCchhhccCchhhhhcccccChhhHhhcCCCeeEeecCCCcEEEEcCCcceeeecccccceeeecccccchh
Q 002854 315 TLEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWL 394 (873)
Q Consensus 315 kFE~l~k~~~p~lf~~~pd~L~h~~t~isP~~L~~~GIpv~r~vQ~pGEFVVTfPgaYHsgfn~GfN~aEAVNFA~~dWL 394 (873)
+||++|++..++ +++ ..+|++|+.|+++||||||++|+|||||||||||||||||+|||++||||||+++|+
T Consensus 247 ~~e~l~~k~~~d-------~~~-~~~~~~p~~L~~~gIPvyr~~QkpGd~Vi~~PgayH~v~n~G~~~n~awN~a~~~~~ 318 (332)
T 2xxz_A 247 TISAFCDRHGVD-------YLT-GSWWPILDDLYASNIPVYRFVQRPGDLVWINAGTVHWVQATGWCNNIAWNVGPLTAY 318 (332)
T ss_dssp HHHHHHHHTTCC-------TTT-SCBCCCHHHHHHTTCCCEEEEECTTCEEEECTTCEEEEEESSSEEEEEEEEESCTTG
T ss_pred HHHHHHHhcCCc-------hhh-ceecCCHHHHHhCCCCeEEEEECCCCEEEECCCceEEEEecceeeEEEEEeCCCcHH
Confidence 999999987654 343 357899999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhc
Q 002854 395 AHGQQAVELYSEQ 407 (873)
Q Consensus 395 ~~g~~a~e~y~~~ 407 (873)
++. .|+++|+.+
T Consensus 319 q~~-~a~erye~n 330 (332)
T 2xxz_A 319 QYQ-LALERYEWN 330 (332)
T ss_dssp GGG-GC-------
T ss_pred HHH-HHHHHHHhh
Confidence 884 888888754
No 7
>2wzo_A Transforming growth factor beta regulator 1; nucleus, cell cycle, tumor suppressor; 1.60A {Homo sapiens}
Probab=99.49 E-value=6.5e-15 Score=143.45 Aligned_cols=66 Identities=23% Similarity=0.432 Sum_probs=61.8
Q ss_pred hccceeeccccceeec-ccccccccccCCCceeeeeEeeecCcccccchhhhhhcCCCCCceeEEEecc
Q 002854 802 LETCVEPINFGCVMCG-KLWCSKQAIFPKGFRSRVNFYSVLNPEKVCNYISEVLDAGLLGPLFKVEFLY 869 (873)
Q Consensus 802 ~~~~~~~~~~g~~~~~-~~w~~~~~i~p~gf~s~~~~~s~~dp~~~~~yise~~d~g~~~plf~v~~e~ 869 (873)
++ ++..+++|.|+.+ +.||+++||||.||++++.|+|+.||.++|.|+|||+|+| .+|+|+|+.|+
T Consensus 9 ~g-~l~v~slG~i~~~~~~fh~~~~IyPvGy~~~R~y~s~~dp~~~~~Y~c~I~d~~-~~P~F~V~~e~ 75 (146)
T 2wzo_A 9 LG-GLTVYSLGEIITDRPGFHDESAIYPVGYCSTRIYASMKCPDQKCLYTCQIKDGG-VQPQFEIVPED 75 (146)
T ss_dssp ET-TEEEEEEEECCCSSGGGBCSSCBCCEEEEEEEEEECSSCTTSEEEEEEEEEECS-SSEEEEEEETT
T ss_pred EC-CEEEEEeeeEccCCCCccCCCceeCCCEEEEEEEecccCCCCeEEEEEEEEECC-CcceeEEEecC
Confidence 44 6899999999997 8999999999999999999999999999999999999976 79999999985
No 8
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=97.99 E-value=4.8e-05 Score=86.17 Aligned_cols=146 Identities=11% Similarity=0.010 Sum_probs=106.7
Q ss_pred eEEeecccccccccccCccceeeeeeeeCCcccEEEeCCccHHHHHHHHHhhCchhhccCchhhhhcccccChhhHhhcC
Q 002854 272 WLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLKAEG 351 (873)
Q Consensus 272 ~LYiGM~fStf~WH~ED~~L~SINYlH~GapK~WY~VP~~~aekFE~l~k~~~p~lf~~~pd~L~h~~t~isP~~L~~~G 351 (873)
|+++|+.+|.+.+|++-....+.|.+..| -|.||-+||.... +. +.+.... ...+ ...++ + ...
T Consensus 234 ~~~mG~~gS~T~~HiD~~~ts~w~~vi~G-rK~w~L~PPt~~n-l~-~~~~~~~----s~~~----~~~~~-~----~~~ 297 (447)
T 3kv4_A 234 YCLMSVRDSYTDFHIDFGGTSVWYHVLKG-EKIFYLIRPTNAN-LT-LFECWSS----SSNQ----NEMFF-G----DQV 297 (447)
T ss_dssp EEEEECTTEEEEEECCGGGCEEEEEEEES-EEEEEEECCCHHH-HH-HHHHHHT----CSSG----GGSCG-G----GGS
T ss_pred EEEEeCCCCCCCeeECCCCCceeEEEeee-EEEEEEeCCCccc-cc-chhhccc----Ccch----hhhhc-c----ccc
Confidence 89999999999999999888888888888 8999999999643 11 1111110 0000 01111 1 123
Q ss_pred CCeeEeecCCCcEEEEcCCcceeeecccccceeeecccccchhhhHHHHHHHHhhccCCC--Cc-cHHHHHHHHHHHHHH
Q 002854 352 VPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQHRKT--SL-SHDKLLFGSVQAAIK 428 (873)
Q Consensus 352 Ipv~r~vQ~pGEFVVTfPgaYHsgfn~GfN~aEAVNFA~~dWL~~g~~a~e~y~~~~r~~--~f-S~e~LL~~~A~~~~~ 428 (873)
...++++|+|||.+++-.|-+|+++|..-+++..-||.+..-++.-....+.=+..+.+. .| -++.|+|-+|.....
T Consensus 298 ~~~~~v~l~pGetlfIPsGWwH~V~nledsIai~~NF~~~~nl~~~l~~~~~E~~~~~~~~~~~p~f~~~~w~~~~~~~~ 377 (447)
T 3kv4_A 298 DKCYKCSVKQGQTLFIPTGWIHAVLTPVDCLAFGGNFLHSLNIEMQLKAYEIEKRLSTADLFRFPNFETICWYVGKHILD 377 (447)
T ss_dssp SCCEEEEEETTCEEEECTTCEEEEEESSCEEEEEEEECCSTTHHHHHHHHHHHHHTTCCGGGSCTTHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCcEEecCCCCeEEEecCCCEEEEccccccccCHHHHHHHHHHHHhcCCCccccccCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999998887777665433343333 24 358899998888776
Q ss_pred HHHHH
Q 002854 429 ALWEL 433 (873)
Q Consensus 429 ~l~el 433 (873)
.+.++
T Consensus 378 ~~~~~ 382 (447)
T 3kv4_A 378 IFRGL 382 (447)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66544
No 9
>2ypd_A Probable JMJC domain-containing histone demethyla PROT EIN 2C; oxidoreductase; 2.10A {Homo sapiens}
Probab=97.98 E-value=1.2e-05 Score=88.99 Aligned_cols=104 Identities=13% Similarity=0.124 Sum_probs=82.6
Q ss_pred ccEEEeCCccHHHHHHHHHhhCchhh---ccCchhhhhcccccChh----hHhhcCCCeeEeecCCCcEEEEcCCcceee
Q 002854 303 KIWYGVPGSHASTLEKAMRKHLPDLF---EEQPDLLHELVTQLSPS----VLKAEGVPVYHVVQHSGEFVLTFPRAYHSG 375 (873)
Q Consensus 303 K~WY~VP~~~aekFE~l~k~~~p~lf---~~~pd~L~h~~t~isP~----~L~~~GIpv~r~vQ~pGEFVVTfPgaYHsg 375 (873)
-+|-...+.+++|+.++++++..+.- ....+-++...+.++.. ...+.||..+.++|++||.|++-+|++|.+
T Consensus 234 AlW~Ifr~~D~~klr~~L~~~~~e~~~~~~~~~dPihdq~~yL~~~~r~~L~ee~gv~~~~~~Q~~GeavfiPaG~~HQV 313 (392)
T 2ypd_A 234 ALWHIYAGKDVDKIREFLQKISKEQGLEVLPEHDPIRDQSWYVNKKLRQRLLEEYGVRTCTLIQFLGDAIVLPAGALHQV 313 (392)
T ss_dssp EEEEEECGGGHHHHHHHHHHHHHHHC------CCHHHHTCCCCCHHHHHHHHHHHCCCCEEEEEETTCEEEECTTCEEEE
T ss_pred ceeeeeCHhhHHHHHHHHHHHHHhhCCCccCCCCcCcCCCEEecHHHHHHHHHhcCCeeEEEEEcCCCEEEecCCCHHHH
Confidence 58999999999999999999765421 11234566667778874 345689999999999999999999999999
Q ss_pred ecccccceeeecccccchhhhHHHHHHHHhh
Q 002854 376 FNCGFNCAEAVNVAPVDWLAHGQQAVELYSE 406 (873)
Q Consensus 376 fn~GfN~aEAVNFA~~dWL~~g~~a~e~y~~ 406 (873)
.|.+-++..|+||..+.-+.....-.+.+|.
T Consensus 314 ~Nl~~~i~va~df~spe~~~~c~~lt~E~R~ 344 (392)
T 2ypd_A 314 QNFHSCIQVTEDFVSPEHLVESFHLTQELRL 344 (392)
T ss_dssp EESSEEEEEEEEECCGGGHHHHHHHHHHC--
T ss_pred hcccchhhHhhhhcChhhHHHHHHHHHHHhh
Confidence 9999999999999999988765554454444
No 10
>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A*
Probab=97.97 E-value=4.4e-05 Score=84.58 Aligned_cols=146 Identities=11% Similarity=0.015 Sum_probs=104.7
Q ss_pred eEEeecccccccccccCccceeeeeeeeCCcccEEEeCCccHHHHHHHHHhhCchhhccCchhhhhcccccChhhHhhcC
Q 002854 272 WLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLKAEG 351 (873)
Q Consensus 272 ~LYiGM~fStf~WH~ED~~L~SINYlH~GapK~WY~VP~~~aekFE~l~k~~~p~lf~~~pd~L~h~~t~isP~~L~~~G 351 (873)
|+++|+.+|.+.+|++-....+-+.+..| -|.||-+||.... +. +.+.... . .+ +...++ + ...
T Consensus 150 ~l~mGp~gS~T~~HiD~~gts~w~~vv~G-rK~w~L~PPt~~n-l~-~y~~~~~----s-~~---~~e~~~-~----~~~ 213 (371)
T 3k3o_A 150 YCLMSVRDSYTDFHIDFGGTSVWYHVLKG-EKIFYLIRPTNAN-LT-LFECWSS----S-SN---QNEMFF-G----DQV 213 (371)
T ss_dssp EEEEECTTEEEEEECCGGGCEEEEEEEEE-EEEEEEECCCHHH-HH-HHHHHHT----S-TT---GGGSCG-G----GTS
T ss_pred EEEEcCCCCCCCeEECCCCCceeEEEeee-EEEEEEECCCccc-cc-ccccccc----C-Cc---cchhhc-c----ccc
Confidence 89999999999999999888888888888 8999999998753 21 1111100 0 00 000111 1 123
Q ss_pred CCeeEeecCCCcEEEEcCCcceeeecccccceeeecccccchhhhHHHHHHHHhhccCCCC--c-cHHHHHHHHHHHHHH
Q 002854 352 VPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQHRKTS--L-SHDKLLFGSVQAAIK 428 (873)
Q Consensus 352 Ipv~r~vQ~pGEFVVTfPgaYHsgfn~GfN~aEAVNFA~~dWL~~g~~a~e~y~~~~r~~~--f-S~e~LL~~~A~~~~~ 428 (873)
...++++|+|||.+++-.|-+|+++|..-+++..-||....=++.-..+.+.=+..+.+.. | -++.|+|-+|.....
T Consensus 214 ~~~~ev~l~pGEtLfIPsGWwH~V~nledSIai~~NFl~~~nl~~~l~~~~~E~~~~~~~~f~fp~F~~~~w~~~~~~~~ 293 (371)
T 3k3o_A 214 DKCYKCSVKQGQTLFIPTGWIHAVLTPVDCLAFGGNFLHSLNIEMQLKAYEIEKRLSTADLFRFPNFETICWYVGKHILD 293 (371)
T ss_dssp SCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCSTTHHHHHHHHHHHHHHC----CCCTTHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCcEEEeCCCCeEEEecCCCeEEECCcccchhhHHHHHHHHHHHHhcCCCcccccccHHHHHHHHHHHHHH
Confidence 5679999999999999999999999999999999999999888777666654333444332 3 358899988887666
Q ss_pred HHHHH
Q 002854 429 ALWEL 433 (873)
Q Consensus 429 ~l~el 433 (873)
.+.++
T Consensus 294 ~~~~~ 298 (371)
T 3k3o_A 294 IFRGL 298 (371)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 11
>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A*
Probab=97.94 E-value=6.9e-05 Score=83.55 Aligned_cols=144 Identities=10% Similarity=-0.018 Sum_probs=106.3
Q ss_pred eEEeecccccccccccCccceeeeeeeeCCcccEEEeCCccHHH--HHHHHHhhCchhhccCchhhhhcccccChhhHhh
Q 002854 272 WLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHAST--LEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLKA 349 (873)
Q Consensus 272 ~LYiGM~fStf~WH~ED~~L~SINYlH~GapK~WY~VP~~~aek--FE~l~k~~~p~lf~~~pd~L~h~~t~isP~~L~~ 349 (873)
|+++|+.+|.+.+|++-....+.|.+..| -|.||-+||..... ++..... ..+ ...++ +.
T Consensus 177 ~~~mGp~gS~T~fHiD~~gTs~w~~vi~G-rK~w~L~PPt~~nl~~y~~~~~s--------~~~----~e~~~-~~---- 238 (392)
T 3pua_A 177 YCLICVKDSYTDFHIDSGGASAWYHVLKG-EKTFYLIRPASANISLYERWRSA--------SNH----SEMFF-AD---- 238 (392)
T ss_dssp EEEEECTTCEEEEECCGGGCEEEEEEEEE-EEEEEEECCCHHHHHHHHHHHHS--------TTG----GGSCG-GG----
T ss_pred EEEEeCCCCCCCEeECCCCCceeeeeccc-eEEEEEECCCcccccchhhcccC--------cch----hhhhh-cc----
Confidence 89999999999999998888888888888 89999999987532 1221110 000 00111 11
Q ss_pred cCCCeeEeecCCCcEEEEcCCcceeeecccccceeeecccccchhhhHHHHHHHHhhccCCCC--c-cHHHHHHHHHHHH
Q 002854 350 EGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQHRKTS--L-SHDKLLFGSVQAA 426 (873)
Q Consensus 350 ~GIpv~r~vQ~pGEFVVTfPgaYHsgfn~GfN~aEAVNFA~~dWL~~g~~a~e~y~~~~r~~~--f-S~e~LL~~~A~~~ 426 (873)
.....++++|+|||.+++-.|-+|+++|..-+++..-||.+..=++....+.+.=+..+.+.- | .++.|+|-+|...
T Consensus 239 ~~~~~~ev~l~pGEtlfIPsGWwH~V~nledSIai~gNFl~~~nl~~~l~~~~~E~~~~~~~~f~fp~F~~~~wy~~~~~ 318 (392)
T 3pua_A 239 QVDKCYKCIVKQGQTLFIPSGWIYATLTPVDCLAFAGHFLHSLSVEMQMRAYEVERRLKLGSLTQFPNFETACWYMGKHL 318 (392)
T ss_dssp GSSCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCTTCHHHHHHHHHHHHHHTCCCSSCCTTHHHHHHHHHHHH
T ss_pred cccceEEEEECCCcEEeeCCCceEEEecCCCEEEEcCcccChhhHHHHHHHHHHHHHhCCCccCcCCChHHHHHHHHHHH
Confidence 124678999999999999999999999999999999999999988887777665333343333 3 4588999888876
Q ss_pred HHHHHHH
Q 002854 427 IKALWEL 433 (873)
Q Consensus 427 ~~~l~el 433 (873)
...+.++
T Consensus 319 l~~~~~~ 325 (392)
T 3pua_A 319 LEAFKGS 325 (392)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655543
No 12
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=97.88 E-value=0.00011 Score=84.27 Aligned_cols=147 Identities=12% Similarity=0.078 Sum_probs=106.5
Q ss_pred ceEEeecccccccccccCccceeeeeeeeCCcccEEEeCCccHHHHHHHHHhhCchhhccCchhhhhcccccChhhHhhc
Q 002854 271 PWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLKAE 350 (873)
Q Consensus 271 P~LYiGM~fStf~WH~ED~~L~SINYlH~GapK~WY~VP~~~aekFE~l~k~~~p~lf~~~pd~L~h~~t~isP~~L~~~ 350 (873)
-|+++|+.+|.+.+|++-....+.+.+..| -|.|+-+||..... . +.+.. ....++ ... .+...
T Consensus 268 r~~~mG~~gS~T~~H~D~~~t~~w~~vv~G-~K~w~L~PPt~~~~-~-~y~~~----~~~~~~----~~~-----~~~~~ 331 (488)
T 3kv5_D 268 KYCLMGVQDSYTDFHIDFGGTSVWYHVLWG-EKIFYLIKPTDENL-A-RYESW----SSSVTQ----SEV-----FFGDK 331 (488)
T ss_dssp CEEEEECTTCEEEEECCGGGCEEEEEEEEE-EEEEEEECCCHHHH-H-HHHHH----HTCSSG----GGS-----CGGGS
T ss_pred eEEEEcCCCCCCCeEECCCCCceeeeccCe-eEEEEEeCCccccc-c-ccccc----ccCCcc----chh-----hhccc
Confidence 389999999999999999888888888888 89999999976431 1 11111 000000 000 11122
Q ss_pred CCCeeEeecCCCcEEEEcCCcceeeecccccceeeecccccchhhhHHHHHHHHhhccCCCCc---cHHHHHHHHHHHHH
Q 002854 351 GVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQHRKTSL---SHDKLLFGSVQAAI 427 (873)
Q Consensus 351 GIpv~r~vQ~pGEFVVTfPgaYHsgfn~GfN~aEAVNFA~~dWL~~g~~a~e~y~~~~r~~~f---S~e~LL~~~A~~~~ 427 (873)
....++++|+|||.+++-.|-+|+++|..-+++..-||....=++.-..+.+.=+..+.+..| -+++|+|-+|....
T Consensus 332 ~~~~~~~~l~pGe~lfIPsGWwH~V~nledsIai~~NF~~~~nl~~~l~~~~~e~~~~~~~~~~~p~f~~~~w~~~~~~l 411 (488)
T 3kv5_D 332 VDKCYKCVVKQGHTLFVPTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLRCYEMEKRLKTPDLFKFPFFEAICWFVAKNLL 411 (488)
T ss_dssp SSCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCSTTHHHHHHHHHHHHHTTCCTTSSCTTHHHHHHHHHHHHH
T ss_pred ccceEEEeeCCCCEEEeCCCceEEeeCCCCeEEEccccCCccCHHHHHHHHHHHHhcCCcccccCccHHHHHHHHHHHHH
Confidence 347799999999999999999999999999999999999999888777766654444444444 35788888888766
Q ss_pred HHHHHH
Q 002854 428 KALWEL 433 (873)
Q Consensus 428 ~~l~el 433 (873)
..+.++
T Consensus 412 ~~~~~~ 417 (488)
T 3kv5_D 412 ETLKEL 417 (488)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 13
>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A*
Probab=97.87 E-value=8.9e-05 Score=82.82 Aligned_cols=146 Identities=12% Similarity=0.075 Sum_probs=105.8
Q ss_pred eEEeecccccccccccCccceeeeeeeeCCcccEEEeCCccHHHHHHHHHhhCchhhccCchhhhhcccccChhhHhhcC
Q 002854 272 WLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLKAEG 351 (873)
Q Consensus 272 ~LYiGM~fStf~WH~ED~~L~SINYlH~GapK~WY~VP~~~aekFE~l~k~~~p~lf~~~pd~L~h~~t~isP~~L~~~G 351 (873)
|+++|+.+|.+.+|++-....+-|.+..| -|.||-+||..... .+.+... ...+ +...++ + ...
T Consensus 178 ~l~mGp~gS~T~~HiD~~gts~w~~vv~G-rK~w~L~PPt~~nl--~ly~~~~----~s~~----~~e~~~-~----~~~ 241 (397)
T 3kv9_A 178 YCLMGVQDSYTDFHIDFGGTSVWYHVLWG-EKIFYLIKPTDENL--ARYESWS----SSVT----QSEVFF-G----DKV 241 (397)
T ss_dssp EEEEECTTCEEEEECCGGGCEEEEEEEEE-EEEEEEECCCHHHH--HHHHHHH----TSGG----GGGSCG-G----GGS
T ss_pred EEEEcCCCCCCCEEECCCCCceeeeecCc-eEEEEEeCCccccc--ccccccc----cCCC----cchhhh-c----ccc
Confidence 99999999999999999988888888888 89999999987541 1111110 0000 000111 1 112
Q ss_pred CCeeEeecCCCcEEEEcCCcceeeecccccceeeecccccchhhhHHHHHHHHhhccCCCCc---cHHHHHHHHHHHHHH
Q 002854 352 VPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQHRKTSL---SHDKLLFGSVQAAIK 428 (873)
Q Consensus 352 Ipv~r~vQ~pGEFVVTfPgaYHsgfn~GfN~aEAVNFA~~dWL~~g~~a~e~y~~~~r~~~f---S~e~LL~~~A~~~~~ 428 (873)
...++++|+|||.+++-.|-+|+++|..-+++..-||....=++.-..+.+.=...+.+..| -++.|+|-+|.....
T Consensus 242 ~~~~~v~l~pGe~lfIPsGW~H~V~nledSIai~~NFl~~~nl~~~l~~~~~E~~~k~~~~~~fp~F~~~~w~~a~~~l~ 321 (397)
T 3kv9_A 242 DKCYKCVVKQGHTLFVPTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLRCYEMEKRLKTPDLFKFPFFEAICWFVAKNLLE 321 (397)
T ss_dssp SCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCSTTHHHHHHHHHHHHHHTCGGGGGSTTHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCEEEeCCCCeEEccCCcCeEEECCcccCchhHHHHHHHHHHHHhcCCCccCcCccHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999888776666543334444433 457888988887665
Q ss_pred HHHHH
Q 002854 429 ALWEL 433 (873)
Q Consensus 429 ~l~el 433 (873)
.+.++
T Consensus 322 ~~~~~ 326 (397)
T 3kv9_A 322 TLKEL 326 (397)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55433
No 14
>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A
Probab=97.71 E-value=0.00042 Score=78.67 Aligned_cols=143 Identities=10% Similarity=-0.007 Sum_probs=98.5
Q ss_pred ceEEeecccccccccccCccceeeeeeeeCCcccEEEeCCccHHHHHHHHHhhCchhhccCchhhhhcccccChhhHhhc
Q 002854 271 PWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLKAE 350 (873)
Q Consensus 271 P~LYiGM~fStf~WH~ED~~L~SINYlH~GapK~WY~VP~~~aekFE~l~k~~~p~lf~~~pd~L~h~~t~isP~~L~~~ 350 (873)
-|+++|..+|.+.+|.+-....+.|.+..| -|.|+-+||...... - ..... ....+.+ ..-|..
T Consensus 198 r~~~mGp~gS~T~~H~D~~~ts~w~avi~G-rK~w~L~PP~~~~~~-~-y~~~~--~s~~q~~-------~~~p~~---- 261 (451)
T 2yu1_A 198 KYCLMSVRGCYTDFHVDFGGTSVWYHIHQG-GKVFWLIPPTAHNLE-L-YENWL--LSGSQGD-------IFLGDR---- 261 (451)
T ss_dssp CEEEEECTTCEEEEECCGGGCEEEEEEEES-CEEEEEECCCHHHHH-H-HHHHH--HTTCCSS-------SCHHHH----
T ss_pred eEEEEccCCCCCCeEECCCCcchhhheecc-eEEEEEeCCCccccc-c-ccccc--ccccchh-------hhhccc----
Confidence 389999999999999999888888888787 799999999975421 1 11100 0001111 011322
Q ss_pred CCCeeEeecCCCcEEEEcCCcceeeecccccceeeecccccchhhhHHHHHHHHhhcc--CCCCcc-HHHHHHHHHHHHH
Q 002854 351 GVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQH--RKTSLS-HDKLLFGSVQAAI 427 (873)
Q Consensus 351 GIpv~r~vQ~pGEFVVTfPgaYHsgfn~GfN~aEAVNFA~~dWL~~g~~a~e~y~~~~--r~~~fS-~e~LL~~~A~~~~ 427 (873)
.-..++++++|||.+++-.|=+|++.|..-+++...||....=++.-....+.=+..+ .+-.|| ++.|+|-+|..-+
T Consensus 262 ~~~~~~v~l~pGE~LfIPsGWwH~V~nledsIait~NF~~~~nl~~~l~~~~~E~~~~v~~~~~~p~f~~~~w~~~~~~~ 341 (451)
T 2yu1_A 262 VSDCQRIELKQGYTFVIPSGWIHAVYTPTDTLVFGGNFLHSFNIPMQLKIYNIEDRTRVPNKFRYPFYYEMCWYVLERYV 341 (451)
T ss_dssp SSCCEEEEECTTCEEEECTTCEEEEECSSCEEEEEEEECCSSSHHHHHHHHHHHHHTTCCTTSSCTTHHHHHHHHHHHHH
T ss_pred cccceEEEECCCcEEEeCCCceEEEecCCCeEEEeeeeCCcccHHHHHHHHHHHHhhCCCccccCccHHHHHHHHHHHHH
Confidence 1356899999999999999999999999999999999999887776554443222222 233444 4678887776654
Q ss_pred HH
Q 002854 428 KA 429 (873)
Q Consensus 428 ~~ 429 (873)
..
T Consensus 342 ~~ 343 (451)
T 2yu1_A 342 YC 343 (451)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 15
>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A*
Probab=97.52 E-value=0.00013 Score=79.86 Aligned_cols=119 Identities=19% Similarity=0.142 Sum_probs=86.3
Q ss_pred cceEEeecccccccccccCccceeeeeeeeCCcccEEEeCCccHHHHHHHHHhhCchhhcc-----CchhhhhcccccCh
Q 002854 270 VPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLFEE-----QPDLLHELVTQLSP 344 (873)
Q Consensus 270 tP~LYiGM~fStf~WH~ED~~L~SINYlH~GapK~WY~VP~~~aekFE~l~k~~~p~lf~~-----~pd~L~h~~t~isP 344 (873)
..|+++|..+|.+.+|.+.....+++.+..| .|.|+.+|+.....+-. .+..... ..+++.. .-|
T Consensus 173 ~~~~~~G~~gs~t~~H~D~~~~~~~~~~v~G-~K~~~L~pP~~~~~ly~-----~~~~~~~~~~~~~~~w~~~----~~P 242 (336)
T 3k2o_A 173 YRWFVMGPPRSGTGIHIDPLGTSAWNALVQG-HKRWCLFPTSTPRELIK-----VTRDEGGNQQDEAITWFNV----IYP 242 (336)
T ss_dssp CEEEEEECTTCEEEEECCGGGCEEEEEEEES-CEEEEEECTTSCHHHHC-----CCHHHHGGGTTCHHHHHHH----TGG
T ss_pred ceEEEECCCCccCCcccCCCccceeeEEEee-eEEEEEeCCCcchhccc-----CcccccCCCccchhhhhhh----hCc
Confidence 4589999999999999999888888888887 68899999997543321 1110000 0111111 112
Q ss_pred hhHhh---cCCCeeEeecCCCcEEEEcCCcceeeecccccceeeecccccchhhhHH
Q 002854 345 SVLKA---EGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQ 398 (873)
Q Consensus 345 ~~L~~---~GIpv~r~vQ~pGEFVVTfPgaYHsgfn~GfN~aEAVNFA~~dWL~~g~ 398 (873)
..-.. .+.+.+.++|+|||.+++-+|-+|++.|.+-+++.+.||.....++.-.
T Consensus 243 ~~~~~~~p~~~~~~~~~l~pGd~l~iP~gw~H~v~~~~~sisv~~~f~~~~nl~~~~ 299 (336)
T 3k2o_A 243 RTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFASSTNFPVVW 299 (336)
T ss_dssp GGGSTTSCGGGCCEEEEECTTCEEEECTTCEEEEEESSCEEEEEEEECCTTTHHHHH
T ss_pred chhhhcccccCceEEEEECCCCEEEeCCCCcEEEecCCCeEEEEcccCCcccHHHHH
Confidence 21111 2568899999999999999999999999999999999999998876543
No 16
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=97.25 E-value=0.0019 Score=74.28 Aligned_cols=137 Identities=17% Similarity=0.108 Sum_probs=95.3
Q ss_pred ceEEeecccccccccccCccceeeeeeeeCCcccEEEeCCccHH--HHHHHHHhhCchhhccCchhhhhcccccChhhHh
Q 002854 271 PWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHAS--TLEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLK 348 (873)
Q Consensus 271 P~LYiGM~fStf~WH~ED~~L~SINYlH~GapK~WY~VP~~~ae--kFE~l~k~~~p~lf~~~pd~L~h~~t~isP~~L~ 348 (873)
-|+++|+.+|.+.+|++-......+++..| -|+||-+||.... .++.... .++ ...++. ..+
T Consensus 298 rf~lmg~~gS~Td~HiD~~gts~w~~v~~G-rK~w~L~PPt~~nl~~y~~w~~---------s~~----~~~wfg-d~l- 361 (528)
T 3pur_A 298 QFCLAGMAGSYTDFHVDFGGSSVYYHILKG-EKIFYIAAPTEQNFAAYQAHET---------SPD----TTTWFG-DIA- 361 (528)
T ss_dssp SEEEEECTTEEEEEECCGGGCEEEEEEEEE-EEEEEEECCCHHHHHHHHHHHH---------SSC----CSCCGG-GGT-
T ss_pred EEEEEeCCCCCCCeeECCCCCceeEEEecc-eEEEEEeCCCccchhhhhhhcc---------CCc----hhhhhc-ccc-
Confidence 489999999999999998887777777777 8999999998543 2222111 111 111211 112
Q ss_pred hcCCCeeEeecCCCcEEEEcCCcceeeecccccceeeecccccchhhhHHHHHHH--H--hhccCCC--Cc-cHHHHHHH
Q 002854 349 AEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVEL--Y--SEQHRKT--SL-SHDKLLFG 421 (873)
Q Consensus 349 ~~GIpv~r~vQ~pGEFVVTfPgaYHsgfn~GfN~aEAVNFA~~dWL~~g~~a~e~--y--~~~~r~~--~f-S~e~LL~~ 421 (873)
...+++++|+|||.+++-+|-+|+++|.--+++..-||.+..=|+.....++. + +..+.+. .| -++.|+|-
T Consensus 362 --~~~~~~v~l~pGEtlfIPsGW~HaV~tleDSIaiggNFl~~~nl~~qlri~~iE~~~~k~~~~~~kf~fp~F~~v~W~ 439 (528)
T 3pur_A 362 --NGAVKRVVIKEGQTLLIPAGWIHAVLTPVDSLVFGGNFLHLGNLEMQMRVYHLENAIRKEIRSEEKFYFPNFELLHWM 439 (528)
T ss_dssp --TTCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCGGGHHHHHHHHHHHHHHHHHCCCTTCCCCTTHHHHHHH
T ss_pred --cccEEEEEECCCCEEEecCCceEEEecCCCeEEEcCcccchhhHHHHHHHHHHHHhhhhccCCCccccCcCHHHHHHH
Confidence 13567999999999999999999999999999999999998877766554432 2 1122233 45 34677776
Q ss_pred HHHH
Q 002854 422 SVQA 425 (873)
Q Consensus 422 ~A~~ 425 (873)
.+..
T Consensus 440 y~~~ 443 (528)
T 3pur_A 440 YMRN 443 (528)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 17
>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*
Probab=97.23 E-value=0.00075 Score=67.65 Aligned_cols=106 Identities=15% Similarity=0.106 Sum_probs=71.8
Q ss_pred cceEEeecccccccccccCccceeeeeeeeCCcccEEEeCCccHHHHHHHHHhhCchhhccCchhhhh--cccccChhh-
Q 002854 270 VPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLFEEQPDLLHE--LVTQLSPSV- 346 (873)
Q Consensus 270 tP~LYiGM~fStf~WH~ED~~L~SINYlH~GapK~WY~VP~~~aekFE~l~k~~~p~lf~~~pd~L~h--~~t~isP~~- 346 (873)
.+++++|..+|.+.+|.+... .++.+..| .|.|..+|+++...+ +|... ..+.. .+....|+.
T Consensus 125 ~~~~wiG~~gs~t~~H~D~~~--n~~~qv~G-~K~w~L~pP~~~~~l-------~~~~~----~~~~~~s~vd~~~~d~~ 190 (235)
T 4gjz_A 125 TINAWFGPQGTISPLHQDPQQ--NFLVQVMG-RKYIRLYSPQESGAL-------YPHDT----HLLHNTSQVDVENPDLE 190 (235)
T ss_dssp EEEEEEECTTCEEEEECCSSE--EEEEEEES-CEEEEEECGGGGGGS-------CBCSS----TTTTTBBSSCTTSCCTT
T ss_pred ceEEEEeCCCCCceeeecccc--ceEEEEee-eEeeEEcCccccccc-------ccCcc----cccCccccccccCcchh
Confidence 468999999999999988753 45556666 899999999876532 22110 00000 000111110
Q ss_pred --HhhcCCCeeEeecCCCcEEEEcCCcceeeecccccceeeeccc
Q 002854 347 --LKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVA 389 (873)
Q Consensus 347 --L~~~GIpv~r~vQ~pGEFVVTfPgaYHsgfn~GfN~aEAVNFA 389 (873)
=.-.+.+.+.++|+|||.+++-++-+|.+.|.+.+++.+++|+
T Consensus 191 ~~p~~~~~~~~~~~l~pGD~LyiP~gW~H~V~~l~~sisvn~w~s 235 (235)
T 4gjz_A 191 KFPKFAKAPFLSCILSPGEILFIPVKYWHYVRALDLSFSVSFWWS 235 (235)
T ss_dssp TCGGGGGCCCEEEEECTTCEEEECTTCEEEEEESSSEEEEEEEEC
T ss_pred hCccccCCCcEEEEECCCCEEEeCCCCcEEEEECCCEEEEEEecC
Confidence 0113467899999999999999999999999998887766653
No 18
>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ...
Probab=96.00 E-value=0.021 Score=62.52 Aligned_cols=112 Identities=17% Similarity=0.012 Sum_probs=73.4
Q ss_pred cccceEEeecccccccccccCccceeeeeeeeCCcccEEEeCCccHHHHHHHHHhhCchhhccCchhhhhcccccChhh-
Q 002854 268 VLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSV- 346 (873)
Q Consensus 268 VttP~LYiGM~fStf~WH~ED~~L~SINYlH~GapK~WY~VP~~~aekFE~l~k~~~p~lf~~~pd~L~h~~t~isP~~- 346 (873)
+...+|++|..+|.+.+|.+.+ ..++.+..| .|.|..+|+.+...+ +|..... +.--...+.+-.|+.
T Consensus 182 ~~~~~l~iG~~gs~t~~H~D~~--~n~~~qv~G-~K~~~L~pP~~~~~l-------y~~~~~~-~~~~~s~vd~~~~d~~ 250 (349)
T 3d8c_A 182 LTSNLLLIGMEGNVTPAHYGEQ--QNFFAQIKG-YKRCILFPPDQFECL-------YPYPVHH-PCDRQSQVDFDNPDYE 250 (349)
T ss_dssp EEECEEEEECTTCEEEEECCSE--EEEEEEEES-CEEEEEECGGGHHHH-------CBBCTTS-TTBTBBCSCTTSCCTT
T ss_pred cccceEEEECCCCCccceECCh--hcEEEEEec-eEEEEEeCcchhhhh-------ccccccC-CCCCcccccCCCcchh
Confidence 3556899999999999998765 466666677 899999999986533 2210000 000000000111110
Q ss_pred --HhhcCCCeeEeecCCCcEEEEcCCcceeeeccc-ccceeeecccc
Q 002854 347 --LKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCG-FNCAEAVNVAP 390 (873)
Q Consensus 347 --L~~~GIpv~r~vQ~pGEFVVTfPgaYHsgfn~G-fN~aEAVNFA~ 390 (873)
-.-...+.+.++++|||.+++-+|-+|.+.|.+ -.++.||||-.
T Consensus 251 ~~p~~~~~~~~~~~l~pGD~LyiP~gWwH~V~~l~d~~~sisvn~w~ 297 (349)
T 3d8c_A 251 RFPNFQNVVGYETVVGPGDVLYIPMYWWHHIESLLNGGITITVNFWY 297 (349)
T ss_dssp TCGGGGGCCEEEEEECTTCEEEECTTCEEEEEECTTSCCEEEEEEEE
T ss_pred hCcccccCCcEEEEECCCCEEEECCCCcEEEEEcCCCCcEEEEEEEc
Confidence 011235789999999999999999999999997 46677777643
No 19
>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A*
Probab=95.75 E-value=0.019 Score=62.44 Aligned_cols=111 Identities=11% Similarity=-0.002 Sum_probs=75.0
Q ss_pred cccceEEeecccccccccccCccceeeeeeeeCCcccEEEeCCccHHHHHHHHHhhCchhhc-cCchhhhhcccccChhh
Q 002854 268 VLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLFE-EQPDLLHELVTQLSPSV 346 (873)
Q Consensus 268 VttP~LYiGM~fStf~WH~ED~~L~SINYlH~GapK~WY~VP~~~aekFE~l~k~~~p~lf~-~~pd~L~h~~t~isP~~ 346 (873)
+...++++|..++.+.+|.+..+ .++.+..| .|.|...|+.+...+ ++.--. ...++-.- ..-.-|.
T Consensus 166 ~~~s~l~~g~~g~~~~~H~D~~~--n~~~qv~G-~K~w~L~pP~~~~~l-------y~~~~~~~~~d~~~~-d~~~~p~- 233 (338)
T 3al5_A 166 FFSSVFRISSPGLQLWTHYDVMD--NLLIQVTG-KKRVVLFSPRDAQYL-------YLKGTKSEVLNIDNP-DLAKYPL- 233 (338)
T ss_dssp EEEEEEEEECTTCEEEEECCSSE--EEEEECSS-CEEEEEECGGGGGGG-------TEETTEESCCCSSSC-CTTTCTT-
T ss_pred cccceeEECCCCCCccceECCcc--cEEEEEEE-EEEEEEECccccccc-------ccCCCCcccccCCCc-chhhCcc-
Confidence 34568999999999999987753 45555566 899999999875432 111000 00000000 0001122
Q ss_pred HhhcCCCeeEeecCCCcEEEEcCCcceeeecccccceeeecccccc
Q 002854 347 LKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVD 392 (873)
Q Consensus 347 L~~~GIpv~r~vQ~pGEFVVTfPgaYHsgfn~GfN~aEAVNFA~~d 392 (873)
+. +.+.+.++++|||.+++-+|-+|.+.|.+.+++.+++|....
T Consensus 234 ~~--~~~~~~~~L~pGD~LyiP~gWwH~v~~l~~sisvn~~~~~~~ 277 (338)
T 3al5_A 234 FS--KARRYECSLEAGDVLFIPALWFHNVISEEFGVGVNIFWKHLP 277 (338)
T ss_dssp GG--GCCEEEEEECTTCEEEECTTCEEEEEESSCEEEEEEEECSSC
T ss_pred cc--cCCCEEEEECCCCEEEECCCCeEEEeeCCCEEEEEEEecCCc
Confidence 22 357899999999999999999999999999998888886644
No 20
>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11
Probab=89.23 E-value=1.4 Score=47.99 Aligned_cols=115 Identities=16% Similarity=0.110 Sum_probs=72.1
Q ss_pred ceEEeecccccccccccCccceeeeeeeeCCcccEEEe-CCccHHHHHHHHHhhCchhhccC----chhhhhcccccChh
Q 002854 271 PWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGV-PGSHASTLEKAMRKHLPDLFEEQ----PDLLHELVTQLSPS 345 (873)
Q Consensus 271 P~LYiGM~fStf~WH~ED~~L~SINYlH~GapK~WY~V-P~~~aekFE~l~k~~~p~lf~~~----pd~L~h~~t~isP~ 345 (873)
+.+|+|-.++.+..|.+.++ .+..+-.| .|.|... |+.....+ .+...... .++......- -|.
T Consensus 143 ~~~~~gp~g~~~~~H~D~~d--nfl~Qv~G-~Krw~L~~~P~~~~~l-------~~~~~~~~~~~~~~~~~~~~~~-~p~ 211 (342)
T 1vrb_A 143 AIVYAAKNGGGFKAHFDAYT--NLIFQIQG-EKTWKLAKNENVSNPM-------QHYDLSEAPYYPDDLQSYWKGD-PPK 211 (342)
T ss_dssp EEEEEECSSCCCCSEECSSE--EEEEEEES-CEEEEEECCSSCSSCS-------SCEECC----CCHHHHHHCCSC-CCC
T ss_pred ceEEEeCCCCCCCCeECChh--cEEEEEEE-EEEEEEecCCcccccc-------Ccccccccccccccccccchhh-ccc
Confidence 45999988999999997765 23333455 7999999 77632110 11000000 0000000000 011
Q ss_pred hHhhcCCCeeEeecCCCcEEEEcCCcceeeeccc--ccceeeecccccchhhhHHHHH
Q 002854 346 VLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCG--FNCAEAVNVAPVDWLAHGQQAV 401 (873)
Q Consensus 346 ~L~~~GIpv~r~vQ~pGEFVVTfPgaYHsgfn~G--fN~aEAVNFA~~dWL~~g~~a~ 401 (873)
+ ...+.+.++-+|||.++.-+|.+|.+.+.| -+++-+++ .+.|..+...+.
T Consensus 212 -~--~~~~~~~~~L~pGD~LyiP~gwwH~v~s~~~~~slsvsi~--~~~~~dll~~~l 264 (342)
T 1vrb_A 212 -E--DLPDAEIVNLTPGTMLYLPRGLWHSTKSDQATLALNITFG--QPAWLDLMLAAL 264 (342)
T ss_dssp -T--TCCSSEEEEECTTCEEEECTTCEEEEECSSCEEEEEEEEC--CCBHHHHHHHHH
T ss_pred -c--ccCCceEEEECCCcEEEeCCCccEEEEECCCCceEEEEEC--CCcHHHHHHHHH
Confidence 1 226789999999999999999999999994 67777777 778987765544
No 21
>4diq_A Lysine-specific demethylase NO66; structural genomics, structural genomics consortium, SGC, HI demethylase, oxidoreductase; HET: PD2; 2.40A {Homo sapiens}
Probab=78.58 E-value=8.7 Score=44.16 Aligned_cols=106 Identities=17% Similarity=0.154 Sum_probs=74.7
Q ss_pred cceEEeeccccc-ccccccCccceeeeeeeeCCcccEEEeCCccHHHHHHHHHhhCchhhccCchhhhhcccccChhhHh
Q 002854 270 VPWLYVGMCFSS-FCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLK 348 (873)
Q Consensus 270 tP~LYiGM~fSt-f~WH~ED~~L~SINYlH~GapK~WY~VP~~~aekFE~l~k~~~p~lf~~~pd~L~h~~t~isP~~L~ 348 (873)
.--+|++-.+|. |..|.++++. +...-.| .|.|...++.+... .+|.. ...+ +.+.
T Consensus 165 ~~N~Y~tp~Gs~g~~pH~D~~Dv--FllQv~G-~KrWrL~~P~~~~~-------~lp~~--~~~~--------~~~~--- 221 (489)
T 4diq_A 165 GSNVYLTPPNSQGFAPHYDDIEA--FVLQLEG-RKLWRVYRPRAPTE-------ELALT--SSPN--------FSQD--- 221 (489)
T ss_dssp EEEEEEECSSBCCSCCBCCSSEE--EEEEEEE-CEEEEEECCSSGGG-------TTCSS--CCCC--------CCGG---
T ss_pred cceEEecCCCcccccCccCCcce--EEEEEee-EEEEEEeCCCCccc-------cCCCc--cccc--------CCcc---
Confidence 345899988884 7899999875 3344556 79999999876431 23321 1111 1222
Q ss_pred hcCCCeeEeecCCCcEEEEcCCcceeeecc--cccceeeecccc-cchhhhHH
Q 002854 349 AEGVPVYHVVQHSGEFVLTFPRAYHSGFNC--GFNCAEAVNVAP-VDWLAHGQ 398 (873)
Q Consensus 349 ~~GIpv~r~vQ~pGEFVVTfPgaYHsgfn~--GfN~aEAVNFA~-~dWL~~g~ 398 (873)
+.+-|++.++-+||+.+++-||..|.+.+. ++++.-++.+.. ..|.++-.
T Consensus 222 ~~~~p~~e~~L~pGDvLYiP~g~~H~~~s~~~~~SlhlTi~~~~~~tw~dll~ 274 (489)
T 4diq_A 222 DLGEPVLQTVLEPGDLLYFPRGFIHQAECQDGVHSLHLTLSTYQRNTWGDFLE 274 (489)
T ss_dssp GCCCCSEEEEECTTCEEEECTTCEEEEEBCSSCCEEEEEEEECTTCBHHHHHH
T ss_pred cccCcceEEEECCCCEEEECCCCceEEEecCCCceEEEeecccCcccHHHHHH
Confidence 246789999999999999999999999998 477777777654 67876544
No 22
>2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein; HET: OGA; 2.57A {Homo sapiens}
Probab=52.54 E-value=60 Score=36.67 Aligned_cols=104 Identities=15% Similarity=0.129 Sum_probs=66.8
Q ss_pred ccceEEeeccccc-ccccccCccceeeeeeeeCCcccEEEeCCccHHHHHHHHHhhCchhhccCchhhhhcccccChhhH
Q 002854 269 LVPWLYVGMCFSS-FCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSVL 347 (873)
Q Consensus 269 ttP~LYiGM~fSt-f~WH~ED~~L~SINYlH~GapK~WY~VP~~~aekFE~l~k~~~p~lf~~~pd~L~h~~t~isP~~L 347 (873)
....+|+|-.++. |..|.++++. +-.+-.| .|.|...|+.. -+|.. .. .- .|.
T Consensus 139 ~~~n~y~~~~g~~g~~~H~D~~dv--f~~Qv~G-~Krw~l~~p~~----------pl~~~---~s------~d--~~~-- 192 (442)
T 2xdv_A 139 VGSNVYITPAGSQGLPPHYDDVEV--FILQLEG-EKHWRLYHPTV----------PLARE---YS------VE--AEE-- 192 (442)
T ss_dssp CEEEEEEECTTCBCSCSEECSSEE--EEEEEES-CEEEEEECCSS----------TTCSS---CE------EC--CTT--
T ss_pred cccceEECCCCCCCccceECCcce--EEEEEEe-EEEEEEccCCC----------Ccccc---CC------CC--chh--
Confidence 4567899998875 5899977653 2233445 79999998864 11210 00 00 111
Q ss_pred hhcCCCeeEeecCCCcEEEEcCCcceeeeccc-ccceeeecc---cccchhhhHHH
Q 002854 348 KAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCG-FNCAEAVNV---APVDWLAHGQQ 399 (873)
Q Consensus 348 ~~~GIpv~r~vQ~pGEFVVTfPgaYHsgfn~G-fN~aEAVNF---A~~dWL~~g~~ 399 (873)
+.|-+.+.++-+|||.++.-||.+|.+.+.+ -..+..+.+ ....|.++-.+
T Consensus 193 -~~~~~~~~~~L~pGD~LYiP~g~~H~~~s~~~~~~SlhlT~~~~~~~~w~~~l~~ 247 (442)
T 2xdv_A 193 -RIGRPVHEFMLKPGDLLYFPRGTIHQADTPAGLAHSTHVTISTYQNNSWGDFLLD 247 (442)
T ss_dssp -TSCSCSEEEEECTTCEEEECTTCEEEEECCSSSCCEEEEEEEECTTCSHHHHHHH
T ss_pred -hcCCcceEEEECCCcEEEECCCceEEEEecCCCcceeeccccccccchHHHHHHH
Confidence 2356789999999999999999999999875 222222222 33668776443
No 23
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=30.34 E-value=18 Score=30.73 Aligned_cols=38 Identities=21% Similarity=0.495 Sum_probs=29.3
Q ss_pred cccccccccccchhccccccccCCcceeccchh-hhcCCCC
Q 002854 491 TERECFSCFYDLHLSAAGCKCSPDRFACLKHAN-IFCSCEI 530 (873)
Q Consensus 491 ~er~C~~Ck~~cfLS~V~C~C~~~~v~CL~Ha~-~lCsC~~ 530 (873)
....|..|+.-+-|..+.|.|. .++|..|-. +...|.-
T Consensus 14 ~~~rC~~C~kkvgl~~f~CrCg--~~FC~~HRy~e~H~C~f 52 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLTGFMCRCG--TTFCGSHRYPEVHGCTF 52 (64)
T ss_dssp SCCCCTTTCCCCCTTCEECSSS--CEECTTTCSTTTTTCCC
T ss_pred cCCcChhhCCccCccCEEeecC--CEeccccCCcccCCCCc
Confidence 3568999999988888999884 689999963 3455653
No 24
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=28.22 E-value=22 Score=30.26 Aligned_cols=37 Identities=27% Similarity=0.592 Sum_probs=28.7
Q ss_pred ccccccccccchhccccccccCCcceeccchh-hhcCCCC
Q 002854 492 ERECFSCFYDLHLSAAGCKCSPDRFACLKHAN-IFCSCEI 530 (873)
Q Consensus 492 er~C~~Ck~~cfLS~V~C~C~~~~v~CL~Ha~-~lCsC~~ 530 (873)
...|..|+.-+-|..+.|.|. .++|..|-. +...|.-
T Consensus 15 ~~rC~~C~kkvgl~~f~CrCg--~~FC~~HR~~e~H~C~f 52 (64)
T 1wg2_A 15 NNRCFSCNKKVGVMGFKCKCG--STFCGSHRYPEKHECSF 52 (64)
T ss_dssp SCSCTTTCCCCTTSCEECTTS--CEECSSSCSSTTTTCCC
T ss_pred CCcChhhCCcccccCeEeecC--CEecccCCCccccCCCc
Confidence 468999999988888999884 689999963 3355653
No 25
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=27.76 E-value=24 Score=30.89 Aligned_cols=38 Identities=24% Similarity=0.581 Sum_probs=29.5
Q ss_pred cccccccccccchhccccccccCCcceeccchh-hhcCCCC
Q 002854 491 TERECFSCFYDLHLSAAGCKCSPDRFACLKHAN-IFCSCEI 530 (873)
Q Consensus 491 ~er~C~~Ck~~cfLS~V~C~C~~~~v~CL~Ha~-~lCsC~~ 530 (873)
....|..|+.-+-|..+.|.|. .++|..|-. +...|.-
T Consensus 24 ~~~RC~~C~kkvgL~~f~CrCg--~~FCs~HRy~e~H~C~f 62 (74)
T 1wfp_A 24 TATRCLSCNKKVGVTGFKCRCG--STFCGTHRYPESHECQF 62 (74)
T ss_dssp CCCBCSSSCCBCTTTCEECTTS--CEECTTTCSTTTSCCCS
T ss_pred cCccchhhcCcccccceEeccC--CEeccccCCCcCCCCcC
Confidence 3568999999999989999885 689999963 3455654
No 26
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=25.95 E-value=25 Score=31.52 Aligned_cols=37 Identities=24% Similarity=0.575 Sum_probs=28.5
Q ss_pred ccccccccccchhc-cccccccCCcceeccchh-hhcCCCC
Q 002854 492 ERECFSCFYDLHLS-AAGCKCSPDRFACLKHAN-IFCSCEI 530 (873)
Q Consensus 492 er~C~~Ck~~cfLS-~V~C~C~~~~v~CL~Ha~-~lCsC~~ 530 (873)
...|..|+.-+-|. .+.|.|. .++|..|-. +...|.-
T Consensus 25 ~~rC~~C~kkvgl~~~f~CrCg--~~FC~~HRy~e~H~C~f 63 (85)
T 1wff_A 25 MKHCFLCGKKTGLATSFECRCG--NNFCASHRYAEAHGCNY 63 (85)
T ss_dssp CCBCSSSCCBCSSSSCEECTTC--CEECTTTCSTGGGTCCS
T ss_pred CccchhhCCeecccCCeEcCCC--CEecccCCCccCCCCcc
Confidence 46899999998886 7999984 689999963 3345653
No 27
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=24.01 E-value=33 Score=29.99 Aligned_cols=36 Identities=25% Similarity=0.635 Sum_probs=28.0
Q ss_pred ccccccccccchhccccccccCCcceeccchh-hhcCCC
Q 002854 492 ERECFSCFYDLHLSAAGCKCSPDRFACLKHAN-IFCSCE 529 (873)
Q Consensus 492 er~C~~Ck~~cfLS~V~C~C~~~~v~CL~Ha~-~lCsC~ 529 (873)
...|..|+.-+=|..+.|.|. .++|..|-. +...|.
T Consensus 25 ~nRC~~CrKkvgL~gf~CrCg--~~FCs~HRy~e~H~C~ 61 (74)
T 1wfl_A 25 KNRCFMCRKKVGLTGFDCRCG--NLFCGLHRYSDKHNCP 61 (74)
T ss_dssp TTBCSSSCCBCGGGCEECTTS--CEECSSSCSTTTTTCC
T ss_pred CCcChhhCCcccccCeecCCC--CEechhcCCCccCCCc
Confidence 457999999988888999985 689999963 234554
No 28
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=22.31 E-value=63 Score=28.33 Aligned_cols=43 Identities=14% Similarity=-0.048 Sum_probs=27.7
Q ss_pred ecCCCcEEEEcCCcceeeecccccceee--ecccccchhhhHHHH
Q 002854 358 VQHSGEFVLTFPRAYHSGFNCGFNCAEA--VNVAPVDWLAHGQQA 400 (873)
Q Consensus 358 vQ~pGEFVVTfPgaYHsgfn~GfN~aEA--VNFA~~dWL~~g~~a 400 (873)
.-.||+++++-|+.-|+..|.|-.-.+. +.+..+.++-...++
T Consensus 69 ~l~~Gd~i~ip~~~~H~~~~~~~~~~~~l~i~~~~~~~~~~~~~~ 113 (117)
T 2b8m_A 69 NYKEGNIVYVPFNVKMLIQNINSDILEFFVVKAPHPKKLNAPEDP 113 (117)
T ss_dssp EEETTCEEEECTTCEEEEECCSSSEEEEEEEECSCGGGGCC----
T ss_pred EeCCCCEEEECCCCcEEeEcCCCCCEEEEEEECCCCCCCCccccc
Confidence 4579999999999999999988653333 334445554433333
Done!