BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 002855
         (873 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1H3I|A Chain A, Crystal Structure Of The Histone Methyltransferase Set79
 pdb|1H3I|B Chain B, Crystal Structure Of The Histone Methyltransferase Set79
          Length = 293

 Score = 32.0 bits (71), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 212 FADGSSYEGTVWDDLAHGKGVYIAEQGLVRYEGEWLQNNMEG 253
           F DGS+ EG   DD   G+GVY  E G V  +G ++   + G
Sbjct: 2   FFDGSTLEGYYVDDALQGQGVYTYEDGGVL-QGTYVDGELNG 42


>pdb|1DGJ|A Chain A, Crystal Structure Of The Aldehyde Oxidoreductase From
           Desulfovibrio Desulfuricans Atcc 27774
          Length = 907

 Score = 31.6 bits (70), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 14/83 (16%)

Query: 186 VDIATPKAVIEELDRIEEFLTWVSYVFADGSSYEGTVWDDLAHGKGVYIAEQGLVRYEGE 245
           V++AT KA +E++  + +     + +  DG  Y G     LA G G+ ++E     YE  
Sbjct: 777 VEVATGKATVEKMVCVADIGKICNKLVVDGQIYGG-----LAQGVGLALSED----YEDL 827

Query: 246 WLQNNMEGHGVVEVDIPDIEPVP 268
              + M G G     IP I+ +P
Sbjct: 828 KKHSTMGGAG-----IPSIKMIP 845


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.136    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,802,905
Number of Sequences: 62578
Number of extensions: 1069964
Number of successful extensions: 1940
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1938
Number of HSP's gapped (non-prelim): 6
length of query: 873
length of database: 14,973,337
effective HSP length: 107
effective length of query: 766
effective length of database: 8,277,491
effective search space: 6340558106
effective search space used: 6340558106
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)