BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002855
(873 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B2RC85|R10B2_HUMAN Radial spoke head 10 homolog B2 OS=Homo sapiens GN=RSPH10B2 PE=2
SV=2
Length = 870
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 81/203 (39%), Gaps = 54/203 (26%)
Query: 210 YVFADGSSYEGTVWDDL------------------------AHGKG-VYIAEQGLVRYEG 244
Y + DGS YEG V + + HGKG +Y ++G YEG
Sbjct: 147 YTWPDGSMYEGEVVNGMRNGFGMFKCSTQPVSYIGHWCNGKRHGKGSIYYNQEGTCWYEG 206
Query: 245 EWLQNNMEGHGVVEVDIPDIEPVPGSKLEEEMR-AEGKIFSRDFMSPEDKKWLEMDIEDS 303
+W+QN +G G+ +I + E+ MR EG++ +W E I++
Sbjct: 207 DWVQNIKKGWGIRCYKSGNIYE---GQWEDNMRHGEGRMRWLTTNEEYTGRW-ERGIQNG 262
Query: 304 I--------QLAGDEYEIPFYERNEWITEF--GKKPEKGRYRYA------GQWKHGRMHG 347
++ +Y + RNE+I EF G + +G++ YA G+W + HG
Sbjct: 263 FGTHTWFLKRIRSSQYPL----RNEYIGEFVNGYRHGRGKFYYASGAMYDGEWVSNKKHG 318
Query: 348 CGLYEINERPIYGRFYFGELLED 370
G GR Y G D
Sbjct: 319 MGRLTFKN----GRVYEGAFSND 337
Score = 40.4 bits (93), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 211 VFADGSSYEGTVWDDLAHGKGVYIAEQGLVRYEGEWLQNNMEGHGV 256
F G +Y G + L HG+G YI GL +YEG++++N HGV
Sbjct: 102 AFQGGCTYRGMFSEGLMHGQGTYIWADGL-KYEGDFVKNVPMNHGV 146
>sp|P0C881|R10B1_HUMAN Radial spoke head 10 homolog B OS=Homo sapiens GN=RSPH10B PE=2 SV=1
Length = 870
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 81/203 (39%), Gaps = 54/203 (26%)
Query: 210 YVFADGSSYEGTVWDDL------------------------AHGKG-VYIAEQGLVRYEG 244
Y + DGS YEG V + + HGKG +Y ++G YEG
Sbjct: 147 YTWPDGSMYEGEVVNGMRNGFGMFKCSTQPVSYIGHWCNGKRHGKGSIYYNQEGTCWYEG 206
Query: 245 EWLQNNMEGHGVVEVDIPDIEPVPGSKLEEEMR-AEGKIFSRDFMSPEDKKWLEMDIEDS 303
+W+QN +G G+ +I + E+ MR EG++ +W E I++
Sbjct: 207 DWVQNIKKGWGIRCYKSGNIYE---GQWEDNMRHGEGRMRWLTTNEEYTGRW-ERGIQNG 262
Query: 304 I--------QLAGDEYEIPFYERNEWITEF--GKKPEKGRYRYA------GQWKHGRMHG 347
++ +Y + RNE+I EF G + +G++ YA G+W + HG
Sbjct: 263 FGTHTWFLKRIRSSQYPL----RNEYIGEFVNGYRHGRGKFYYASGAMYDGEWVSNKKHG 318
Query: 348 CGLYEINERPIYGRFYFGELLED 370
G GR Y G D
Sbjct: 319 MGRLTFKN----GRVYEGAFSND 337
Score = 40.4 bits (93), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 211 VFADGSSYEGTVWDDLAHGKGVYIAEQGLVRYEGEWLQNNMEGHGV 256
F G +Y G + L HG+G YI GL +YEG++++N HGV
Sbjct: 102 AFQGGCTYRGMFSEGLMHGQGTYIWADGL-KYEGDFVKNVPMNHGV 146
>sp|Q8IID4|DYHC2_PLAF7 Dynein heavy chain-like protein PF11_0240 OS=Plasmodium falciparum
(isolate 3D7) GN=PF11_0240 PE=3 SV=1
Length = 5251
Score = 43.1 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 594 EKKKESEMKLQLYEKELELIEAELCLEEAIEEMDEELKKREE--EEEKKAELGLEEEENL 651
EK E E ++ ++ + IE E+A+E+ E+ K E+ E+EK E E+E+ +
Sbjct: 4152 EKNTEDEKAVEKNTEDEKAIEKNTEDEKAVEKNTEDEKAVEQNTEDEKVVEENTEDEKAV 4211
Query: 652 SALSSQPEKATAEVGRDEVKVEEGEEEEEEEEEEDAPASFGSVSADENQTKDDQKGKRPG 711
+++ EKA + DE VEE E+E+ EE++ + G ++ Q D + ++ G
Sbjct: 4212 EK-NTEDEKAVEKNTEDEKVVEEKIEDEKGEEQKAEEENVGIEEVEKVQIDDYKVSEKKG 4270
Query: 712 DS 713
++
Sbjct: 4271 EN 4272
Score = 37.4 bits (85), Expect = 0.59, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 5/100 (5%)
Query: 594 EKKKESEMKLQLYEKELELIEAELCLEEAIEE--MDEELKKREEEEEKKAELGLEEEENL 651
E E E ++ ++ + +E E+AIE+ DE+ ++ E+EK E E+E+ +
Sbjct: 4112 EINTEDEKAVEKNTEDEKAVEKNTEDEKAIEKNTEDEKAVEKNTEDEKAVEKNTEDEKAI 4171
Query: 652 SALSSQPEKATAEVGRDEVKVEEGEEEEE--EEEEEDAPA 689
+++ EKA + DE VE+ E+E+ EE ED A
Sbjct: 4172 EK-NTEDEKAVEKNTEDEKAVEQNTEDEKVVEENTEDEKA 4210
Score = 33.5 bits (75), Expect = 7.9, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 8/93 (8%)
Query: 620 EEAIE--EMDEELKKREEEEEKKAELGLEEEENLSALSSQPEKATAEVGRDEVKVEEGEE 677
E+AIE DE+ ++ E+EK E E+E+ + +++ EKA + DE VE+ E
Sbjct: 4108 EKAIEINTEDEKAVEKNTEDEKAVEKNTEDEKAIEK-NTEDEKAVEKNTEDEKAVEKNTE 4166
Query: 678 EEE-----EEEEEDAPASFGSVSADENQTKDDQ 705
+E+ E+E+ + A E T+D++
Sbjct: 4167 DEKAIEKNTEDEKAVEKNTEDEKAVEQNTEDEK 4199
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.133 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 384,011,963
Number of Sequences: 539616
Number of extensions: 19558055
Number of successful extensions: 213316
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1454
Number of HSP's successfully gapped in prelim test: 2806
Number of HSP's that attempted gapping in prelim test: 116169
Number of HSP's gapped (non-prelim): 61331
length of query: 873
length of database: 191,569,459
effective HSP length: 126
effective length of query: 747
effective length of database: 123,577,843
effective search space: 92312648721
effective search space used: 92312648721
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 66 (30.0 bits)