Query 002855
Match_columns 873
No_of_seqs 264 out of 1688
Neff 3.7
Searched_HMMs 46136
Date Thu Mar 28 12:09:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002855.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002855hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03185 phosphatidylinositol 100.0 2.4E-30 5.1E-35 301.3 15.9 160 203-372 19-181 (765)
2 PLN03185 phosphatidylinositol 100.0 3E-29 6.6E-34 292.1 18.8 185 208-403 1-192 (765)
3 KOG0231 Junctional membrane co 99.6 4.6E-15 1E-19 166.6 9.2 161 203-372 130-307 (455)
4 COG4642 Uncharacterized protei 99.5 4E-13 8.6E-18 129.7 10.9 116 205-373 21-136 (139)
5 KOG0231 Junctional membrane co 99.3 3.1E-12 6.8E-17 144.1 6.6 168 208-387 114-303 (455)
6 COG4642 Uncharacterized protei 99.3 1.8E-11 3.8E-16 118.5 9.2 120 214-386 7-130 (139)
7 smart00698 MORN Possible plasm 97.1 0.00055 1.2E-08 49.7 3.7 21 335-355 2-22 (26)
8 smart00698 MORN Possible plasm 97.1 0.0008 1.7E-08 48.8 3.9 22 217-238 2-23 (26)
9 PF02493 MORN: MORN repeat; I 96.8 0.00094 2E-08 46.2 2.6 22 218-239 1-22 (23)
10 PF02493 MORN: MORN repeat; I 96.7 0.0012 2.7E-08 45.6 2.4 20 336-355 1-20 (23)
11 COG2849 Uncharacterized protei 96.1 0.26 5.6E-06 52.0 16.5 143 203-371 84-228 (230)
12 COG2849 Uncharacterized protei 91.9 1.8 3.9E-05 45.8 11.7 87 208-296 113-201 (230)
13 KOG1144 Translation initiation 64.5 10 0.00022 47.1 5.4 88 573-664 208-295 (1064)
14 KOG3032 Uncharacterized conser 60.8 53 0.0011 36.0 9.3 25 610-634 187-211 (264)
15 KOG0804 Cytoplasmic Zn-finger 58.2 24 0.00052 41.5 6.7 42 568-609 371-412 (493)
16 PHA03158 hypothetical protein; 47.2 67 0.0015 34.5 7.3 87 532-630 167-270 (273)
17 PHA02562 46 endonuclease subun 44.4 70 0.0015 37.2 7.8 78 548-631 133-212 (562)
18 PLN03237 DNA topoisomerase 2; 40.7 2.9E+02 0.0062 37.4 12.9 14 500-513 908-921 (1465)
19 KOG4364 Chromatin assembly fac 39.6 1.1E+02 0.0024 37.9 8.5 31 687-724 371-401 (811)
20 PF04871 Uso1_p115_C: Uso1 / p 38.1 57 0.0012 32.5 5.0 18 646-663 85-102 (136)
21 TIGR00570 cdk7 CDK-activating 36.9 1.3E+02 0.0029 34.0 8.1 43 584-626 118-160 (309)
22 KOG0163 Myosin class VI heavy 33.5 89 0.0019 39.3 6.5 37 414-450 744-784 (1259)
23 PF08004 DUF1699: Protein of u 31.6 30 0.00066 34.6 2.0 30 421-450 72-101 (131)
24 KOG4156 Claspin, protein media 31.0 1.9E+02 0.0042 35.9 8.5 46 770-815 785-833 (1329)
25 PF15290 Syntaphilin: Golgi-lo 29.0 1.1E+02 0.0024 34.4 5.8 89 516-626 37-126 (305)
26 KOG2147 Nucleolar protein invo 28.9 27 0.0006 43.2 1.4 27 846-872 604-630 (823)
27 COG4741 Predicted secreted end 27.4 2.3E+02 0.005 29.7 7.3 47 588-634 20-66 (175)
28 COG1579 Zn-ribbon protein, pos 26.2 2.6E+02 0.0056 30.8 7.9 74 568-644 99-173 (239)
29 PF10446 DUF2457: Protein of u 25.9 1.8E+02 0.0038 34.7 6.9 14 752-765 186-199 (458)
30 PLN02372 violaxanthin de-epoxi 25.3 2.3E+02 0.0049 33.7 7.6 37 575-611 350-389 (455)
31 KOG3478 Prefoldin subunit 6, K 24.1 1.9E+02 0.0041 28.7 5.7 37 597-633 65-102 (120)
32 PF04220 YihI: Der GTPase acti 23.5 1.3E+02 0.0029 31.4 4.9 43 606-648 97-150 (169)
33 KOG4031 Vesicle coat protein c 22.4 3.2E+02 0.007 29.7 7.5 43 585-633 105-148 (216)
34 KOG2141 Protein involved in hi 22.0 98 0.0021 38.7 4.2 41 659-699 240-280 (822)
35 PLN03086 PRLI-interacting fact 21.3 2.7E+02 0.0058 34.1 7.5 54 587-640 8-61 (567)
36 PTZ00121 MAEBL; Provisional 20.4 2.4E+02 0.0053 38.2 7.2 20 629-648 1665-1684(2084)
No 1
>PLN03185 phosphatidylinositol phosphate kinase; Provisional
Probab=99.97 E-value=2.4e-30 Score=301.27 Aligned_cols=160 Identities=24% Similarity=0.307 Sum_probs=117.9
Q ss_pred cccceEEEEecCCCEEEEEEECCeeeeeEEEEeeCCCeEEEEEecCCeeeeeEEEEEecCCCceeEeEEeCCeeeeeeEE
Q 002855 203 EFLTWVSYVFADGSSYEGTVWDDLAHGKGVYIAEQGLVRYEGEWLQNNMEGHGVVEVDIPDIEPVPGSKLEEEMRAEGKI 282 (873)
Q Consensus 203 ef~G~G~yif~DGS~YEGEWknGkrHGkGky~~~DGdv~YEGEWkNGKrhG~Gv~~y~~pDGsvYEGeWkNGKrHG~Gk~ 282 (873)
..+|.|++.|+||++|+|+|.+|++||.|+++|++|. +|+|+|.+|++||+|++++ ++|.+|+|+|.+|++||.|++
T Consensus 19 ~~hG~G~~~~~DG~~YeGew~~Gk~hG~G~~~~~nG~-~YeGeF~nG~~hG~G~~~~--~~G~~YeG~w~~gkkhG~G~~ 95 (765)
T PLN03185 19 VPEGPGKYLWSDGCMYEGEWRRGMRHGNGKISWPSGA-TYEGEFSGGYMHGSGTYTG--TDGTTYKGRWRLNLKHGLGYQ 95 (765)
T ss_pred ccccceEEEECCCCEEEEEEECCEeeCcEeEEeCCCC-EEEEEEECCEEeceEEEEe--cCCCEEEEEEeCCcccceeEE
Confidence 3456777777777777777777777777777777776 7777777777777777774 777777777777777777777
Q ss_pred EecCCCCCcccceecccccCC--eeecCc-EEEcceeecCeeeccCceeecCCCeEEEEEEeCCceeeeEEEEEcCCCCC
Q 002855 283 FSRDFMSPEDKKWLEMDIEDS--IQLAGD-EYEIPFYERNEWITEFGKKPEKGRYRYAGQWKHGRMHGCGLYEINERPIY 359 (873)
Q Consensus 283 ~~~dG~s~YeGeW~eG~fr~G--lr~gDG-vYeGeFy~NGdW~nG~Gk~~G~Gg~~YEGeWknGKrHG~Gvytf~DG~~~ 359 (873)
+++++ ..|+|+|.++...+. +.+.+| +|.|+|..+- ++|.|++.+.++.+|+|+|.+|++||.|+|+|+|
T Consensus 96 ~y~nG-~vYeG~wk~G~~~G~G~y~~~nG~~Y~Gefk~Gk--~~G~G~l~~~nG~~YeG~w~nG~~hG~G~y~~~D---- 168 (765)
T PLN03185 96 RYPNG-DVFEGSWIQGLQEGPGKYTWANGNVYLGDMKGGK--MSGKGTLTWVSGDSYEGQWLDGMMHGFGVYTWSD---- 168 (765)
T ss_pred EEecc-hhhhhhhhcCceecceeeeccCCCeEEEEecCCE--EecCEEEEEeCCCeEEEEEeCCcceeeEEEEECC----
Confidence 77776 667777776554432 566666 7777666432 6777777776666777777777777777777777
Q ss_pred CcEEEEEEecCcc
Q 002855 360 GRFYFGELLEDSE 372 (873)
Q Consensus 360 G~~YEGeFknGkk 372 (873)
|..|+|.|.+|++
T Consensus 169 G~~Y~G~W~~G~~ 181 (765)
T PLN03185 169 GGCYVGTWTRGLK 181 (765)
T ss_pred CCEEEEEeeCCce
Confidence 7777777777765
No 2
>PLN03185 phosphatidylinositol phosphate kinase; Provisional
Probab=99.96 E-value=3e-29 Score=292.09 Aligned_cols=185 Identities=21% Similarity=0.274 Sum_probs=163.2
Q ss_pred EEEEecCCCEEEEEEECCeeeeeEEEEeeCCCeEEEEEecCCeeeeeEEEEEecCCCceeEeEEeCCeeeeeeEEEecCC
Q 002855 208 VSYVFADGSSYEGTVWDDLAHGKGVYIAEQGLVRYEGEWLQNNMEGHGVVEVDIPDIEPVPGSKLEEEMRAEGKIFSRDF 287 (873)
Q Consensus 208 G~yif~DGS~YEGEWknGkrHGkGky~~~DGdv~YEGEWkNGKrhG~Gv~~y~~pDGsvYEGeWkNGKrHG~Gk~~~~dG 287 (873)
|.++|+||++|+|+|.+|++||.|+++|+||. +|+|+|++|++||.|+++| ++|.+|+|+|.+|++||.|++++.++
T Consensus 1 Ge~~~~nGd~Y~Ge~~~g~~hG~G~~~~~DG~-~YeGew~~Gk~hG~G~~~~--~nG~~YeGeF~nG~~hG~G~~~~~~G 77 (765)
T PLN03185 1 GELVLSNGDFYSGSLLGNVPEGPGKYLWSDGC-MYEGEWRRGMRHGNGKISW--PSGATYEGEFSGGYMHGSGTYTGTDG 77 (765)
T ss_pred CeEEecCCCEEEEEEECCccccceEEEECCCC-EEEEEEECCEeeCcEeEEe--CCCCEEEEEEECCEEeceEEEEecCC
Confidence 57899999999999999999999999999998 9999999999999999995 99999999999999999999999987
Q ss_pred CCCcccceecccccCC--eeecCc-EEEcceeecCeeeccCceeecCCCeEEEEEEeCCceeeeEEEEEcCCCCCCcEEE
Q 002855 288 MSPEDKKWLEMDIEDS--IQLAGD-EYEIPFYERNEWITEFGKKPEKGRYRYAGQWKHGRMHGCGLYEINERPIYGRFYF 364 (873)
Q Consensus 288 ~s~YeGeW~eG~fr~G--lr~gDG-vYeGeFy~NGdW~nG~Gk~~G~Gg~~YEGeWknGKrHG~Gvytf~DG~~~G~~YE 364 (873)
..|+|+|.++...+- +.+.+| +|.|.|..+- .+|.|++.+.++.+|.|+|++|++||.|+++|+| |.+|+
T Consensus 78 -~~YeG~w~~gkkhG~G~~~y~nG~vYeG~wk~G~--~~G~G~y~~~nG~~Y~Gefk~Gk~~G~G~l~~~n----G~~Ye 150 (765)
T PLN03185 78 -TTYKGRWRLNLKHGLGYQRYPNGDVFEGSWIQGL--QEGPGKYTWANGNVYLGDMKGGKMSGKGTLTWVS----GDSYE 150 (765)
T ss_pred -CEEEEEEeCCcccceeEEEEecchhhhhhhhcCc--eecceeeeccCCCeEEEEecCCEEecCEEEEEeC----CCeEE
Confidence 789999987655432 667777 7888877543 7999999998888999999999999999999999 99999
Q ss_pred EEEecCccc---cc-cccccchhhhHHHHHhhcceeeecCCcc
Q 002855 365 GELLEDSEG---CD-EETVALHAGLAEVAAAKARMFVNKPDGM 403 (873)
Q Consensus 365 GeFknGkkg---cg-~~dGalyaG~ae~aa~k~rmFv~KPDG~ 403 (873)
|.|.+|++. ++ +.+|.+|.|.|......+.... .|+|.
T Consensus 151 G~w~nG~~hG~G~y~~~DG~~Y~G~W~~G~~~G~G~~-y~~G~ 192 (765)
T PLN03185 151 GQWLDGMMHGFGVYTWSDGGCYVGTWTRGLKDGKGVF-YPAGS 192 (765)
T ss_pred EEEeCCcceeeEEEEECCCCEEEEEeeCCceEeEEEE-EECCC
Confidence 999999864 23 7899999999998877776655 35554
No 3
>KOG0231 consensus Junctional membrane complex protein Junctophilin and related MORN repeat proteins [General function prediction only]
Probab=99.57 E-value=4.6e-15 Score=166.63 Aligned_cols=161 Identities=25% Similarity=0.355 Sum_probs=127.8
Q ss_pred cccceEEEEecCCCEEEEEEECCeeeeeEEEEeeCCCeEEEEEecCCeeeeeEEEEEecCCCceeEeEEeCC----eeee
Q 002855 203 EFLTWVSYVFADGSSYEGTVWDDLAHGKGVYIAEQGLVRYEGEWLQNNMEGHGVVEVDIPDIEPVPGSKLEE----EMRA 278 (873)
Q Consensus 203 ef~G~G~yif~DGS~YEGEWknGkrHGkGky~~~DGdv~YEGEWkNGKrhG~Gv~~y~~pDGsvYEGeWkNG----KrHG 278 (873)
...+-|..++++|++|+|+|.+++++|.|++++++|. .|+|+|.++++||+|++++ +||.+|+|+|.++ .+||
T Consensus 130 ~~~g~g~~~~~~g~~Y~G~~~~~k~sG~Gv~~~~~G~-~Y~Gew~~n~~hG~G~~~~--pdGsk~eg~~~~~~l~~l~~g 206 (455)
T KOG0231|consen 130 TRSGEGVIELPTGDTYEGEFKRGKRSGFGVYIRSDGL-KYEGEWLDNRRHGYGVLTF--PDGSKYEGQYKNNILEALRHG 206 (455)
T ss_pred ccCccceEecCCCCEEEeeecCCcccccceEEecCCC-EeeceecCCCccCCCeEEc--cCCCEEEEEeecccccccccc
Confidence 4556889999999999999999999999999999997 9999999999999999995 9999999999999 8999
Q ss_pred eeEEEecC---------CCCCcccceecccccCC---eeecCc-EEEcceeecCeeeccCceeecCCCeEEEEEEeCCce
Q 002855 279 EGKIFSRD---------FMSPEDKKWLEMDIEDS---IQLAGD-EYEIPFYERNEWITEFGKKPEKGRYRYAGQWKHGRM 345 (873)
Q Consensus 279 ~Gk~~~~d---------G~s~YeGeW~eG~fr~G---lr~gDG-vYeGeFy~NGdW~nG~Gk~~G~Gg~~YEGeWknGKr 345 (873)
.|.+.+.+ ....|.++|..-.-.++ +...+| .|.+.+..+ -.+|.+..+..+...|.|.|..+.+
T Consensus 207 k~~~~~~~~~~~a~ra~~~~~~~~Ew~~~~~~~~~~~~e~~~g~~~~~~~~~~--~~~g~~~~~~~~~~~~~g~~~~~~~ 284 (455)
T KOG0231|consen 207 KGRYKFDDALEAAQRAATIARYSGEWAARGQSHGRGYAEAADGSAYAGQEDAG--VARGLAKLHFPNGSGYVGEFKQDKK 284 (455)
T ss_pred eEEEEEeccchhhhhhhhhhhhhhhhhhhcCCCcceeEEeccccchhhhhhcC--ccccccceeccccccccCcceeccc
Confidence 99999886 24688888886222222 333333 444433321 1456666666666568888888888
Q ss_pred eeeEEEEEcCCCCCCcEEEEEEecCcc
Q 002855 346 HGCGLYEINERPIYGRFYFGELLEDSE 372 (873)
Q Consensus 346 HG~Gvytf~DG~~~G~~YEGeFknGkk 372 (873)
||.|++.+.+ +..+++.|..+..
T Consensus 285 ~g~~~~~~~~----~~~~e~~~~~~~~ 307 (455)
T KOG0231|consen 285 HGGGQFLFLN----GSEYEGWFREGPK 307 (455)
T ss_pred cCcceeeecc----ccccccccccCcc
Confidence 8888888887 8888888877654
No 4
>COG4642 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.45 E-value=4e-13 Score=129.72 Aligned_cols=116 Identities=20% Similarity=0.313 Sum_probs=82.5
Q ss_pred cceEEEEecCCCEEEEEEECCeeeeeEEEEeeCCCeEEEEEecCCeeeeeEEEEEecCCCceeEeEEeCCeeeeeeEEEe
Q 002855 205 LTWVSYVFADGSSYEGTVWDDLAHGKGVYIAEQGLVRYEGEWLQNNMEGHGVVEVDIPDIEPVPGSKLEEEMRAEGKIFS 284 (873)
Q Consensus 205 ~G~G~yif~DGS~YEGEWknGkrHGkGky~~~DGdv~YEGEWkNGKrhG~Gv~~y~~pDGsvYEGeWkNGKrHG~Gk~~~ 284 (873)
.+.+++...+++++.|.+++++..|.|.+.+.+|+ +|+|.++|++++|.|++++ ++|++|+|.|.+++++|.|++..
T Consensus 21 ~g~s~~~~~~car~~g~~kqg~~~Gkgs~~~~~G~-~Y~Gtl~ngk~nGqG~~~~--~ngd~Y~g~F~s~~F~g~G~~~~ 97 (139)
T COG4642 21 EGLSTYDILGCARVGGSLKQGKLAGKGSLKYDNGR-IYTGTLKNGKMNGQGTYTF--ANGDIYEGPFNSGKFRGQGTRGS 97 (139)
T ss_pred cccceEEeccccEEeeeEeeeecCCCccEEEcCCc-cccceEEcCcccCcEEEEe--cCCCeEeccccCccccceEeecc
Confidence 34556666666666666666666666666666665 6666666666666666664 66666666666666666666543
Q ss_pred cCCCCCcccceecccccCCeeecCcEEEcceeecCeeeccCceeecCCCeEEEEEEeCCceeeeEEEEEcCCCCCCcEEE
Q 002855 285 RDFMSPEDKKWLEMDIEDSIQLAGDEYEIPFYERNEWITEFGKKPEKGRYRYAGQWKHGRMHGCGLYEINERPIYGRFYF 364 (873)
Q Consensus 285 ~dG~s~YeGeW~eG~fr~Glr~gDGvYeGeFy~NGdW~nG~Gk~~G~Gg~~YEGeWknGKrHG~Gvytf~DG~~~G~~YE 364 (873)
.+ +..|.|.|..+...|.|.+...+ |.+|.
T Consensus 98 ~~----------------------------------------------Gw~~~G~F~~Gq~~g~g~l~~~~----g~vy~ 127 (139)
T COG4642 98 FN----------------------------------------------GWLYIGRFTEGQANGKGFLLKED----GSVYT 127 (139)
T ss_pred cc----------------------------------------------CCEEeeeecccccCCceeEEecC----CcEEe
Confidence 32 23889999999999999999998 89999
Q ss_pred EEEecCccc
Q 002855 365 GELLEDSEG 373 (873)
Q Consensus 365 GeFknGkkg 373 (873)
|.|+.++..
T Consensus 128 G~fk~g~f~ 136 (139)
T COG4642 128 GMFKQGRFP 136 (139)
T ss_pred eeEEeeecC
Confidence 999887764
No 5
>KOG0231 consensus Junctional membrane complex protein Junctophilin and related MORN repeat proteins [General function prediction only]
Probab=99.28 E-value=3.1e-12 Score=144.08 Aligned_cols=168 Identities=21% Similarity=0.229 Sum_probs=118.9
Q ss_pred EEEEecCCCEEEEEEECCeeeeeEEEEeeCCCeEEEEEecCCeeeeeEEEEEecCCCceeEeEEeCCeeeeeeEEEecCC
Q 002855 208 VSYVFADGSSYEGTVWDDLAHGKGVYIAEQGLVRYEGEWLQNNMEGHGVVEVDIPDIEPVPGSKLEEEMRAEGKIFSRDF 287 (873)
Q Consensus 208 G~yif~DGS~YEGEWknGkrHGkGky~~~DGdv~YEGEWkNGKrhG~Gv~~y~~pDGsvYEGeWkNGKrHG~Gk~~~~dG 287 (873)
+.+.-.+...|.|.. +.+.|.|+.++++|+ +|+|+|.+++++|.|+++| ++|..|+|.|.++++||+|+++++++
T Consensus 114 ~~~~~~~~~~~~~~~--~~~~g~g~~~~~~g~-~Y~G~~~~~k~sG~Gv~~~--~~G~~Y~Gew~~n~~hG~G~~~~pdG 188 (455)
T KOG0231|consen 114 SELLSTDSGGEEGEE--GTRSGEGVIELPTGD-TYEGEFKRGKRSGFGVYIR--SDGLKYEGEWLDNRRHGYGVLTFPDG 188 (455)
T ss_pred cceecCCcccccccc--cccCccceEecCCCC-EEEeeecCCcccccceEEe--cCCCEeeceecCCCccCCCeEEccCC
Confidence 444445555666665 889999999999998 9999999999999999986 99999999999999999999999998
Q ss_pred CCCcccceecccccCCeeecCc------------------EEEcceeecCeeeccCceeecCCCeEEEEEEeCCceeeeE
Q 002855 288 MSPEDKKWLEMDIEDSIQLAGD------------------EYEIPFYERNEWITEFGKKPEKGRYRYAGQWKHGRMHGCG 349 (873)
Q Consensus 288 ~s~YeGeW~eG~fr~Glr~gDG------------------vYeGeFy~NGdW~nG~Gk~~G~Gg~~YEGeWknGKrHG~G 349 (873)
+.|+|+|.++.. ..++++.| +|.+++.+-++ .++.+.+.-..+..|.+.|..+..+|.+
T Consensus 189 -sk~eg~~~~~~l-~~l~~gk~~~~~~~~~~~a~ra~~~~~~~~Ew~~~~~-~~~~~~~e~~~g~~~~~~~~~~~~~g~~ 265 (455)
T KOG0231|consen 189 -SKYEGQYKNNIL-EALRHGKGRYKFDDALEAAQRAATIARYSGEWAARGQ-SHGRGYAEAADGSAYAGQEDAGVARGLA 265 (455)
T ss_pred -CEEEEEeecccc-cccccceEEEEEeccchhhhhhhhhhhhhhhhhhhcC-CCcceeEEeccccchhhhhhcCcccccc
Confidence 889999987643 11333333 23333222111 3555555544444777777777777777
Q ss_pred EEEEcCCCCCCcEEEEEEecCccccc----cccccchhhhHH
Q 002855 350 LYEINERPIYGRFYFGELLEDSEGCD----EETVALHAGLAE 387 (873)
Q Consensus 350 vytf~DG~~~G~~YEGeFknGkkgcg----~~dGalyaG~ae 387 (873)
.+.+.+ +..|.|.|..+..... ..++..+.+.+.
T Consensus 266 ~~~~~~----~~~~~g~~~~~~~~g~~~~~~~~~~~~e~~~~ 303 (455)
T KOG0231|consen 266 KLHFPN----GSGYVGEFKQDKKHGGGQFLFLNGSEYEGWFR 303 (455)
T ss_pred ceeccc----cccccCcceeccccCcceeeeccccccccccc
Confidence 777777 5557777766664321 334444444444
No 6
>COG4642 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.26 E-value=1.8e-11 Score=118.50 Aligned_cols=120 Identities=21% Similarity=0.297 Sum_probs=105.3
Q ss_pred CCCEEEEEEECCeeeeeEEEEeeCCCeEEEEEecCCeeeeeEEEEEecCCCceeEeEEeCCeeeeeeEEEecCCCCCccc
Q 002855 214 DGSSYEGTVWDDLAHGKGVYIAEQGLVRYEGEWLQNNMEGHGVVEVDIPDIEPVPGSKLEEEMRAEGKIFSRDFMSPEDK 293 (873)
Q Consensus 214 DGS~YEGEWknGkrHGkGky~~~DGdv~YEGEWkNGKrhG~Gv~~y~~pDGsvYEGeWkNGKrHG~Gk~~~~dG~s~YeG 293 (873)
-|-.|+|.|..++..|.+++...++. ++.|..++++..|.|++.+ .+|..|+|.++|++++|.|+++++++
T Consensus 7 ~g~~y~~~~~~g~~~g~s~~~~~~ca-r~~g~~kqg~~~Gkgs~~~--~~G~~Y~Gtl~ngk~nGqG~~~~~ng------ 77 (139)
T COG4642 7 FGLRYEGFFVRGKLEGLSTYDILGCA-RVGGSLKQGKLAGKGSLKY--DNGRIYTGTLKNGKMNGQGTYTFANG------ 77 (139)
T ss_pred hheeeeeEEecccccccceEEecccc-EEeeeEeeeecCCCccEEE--cCCccccceEEcCcccCcEEEEecCC------
Confidence 36789999999999999999999997 9999999999999999997 78999999999999999999998764
Q ss_pred ceecccccCCeeecCcEEEcceeecCeeeccCceeecCCCeEEEEEEeCCceeeeEEEEEcCCCCCCcEEEEEEecCccc
Q 002855 294 KWLEMDIEDSIQLAGDEYEIPFYERNEWITEFGKKPEKGRYRYAGQWKHGRMHGCGLYEINERPIYGRFYFGELLEDSEG 373 (873)
Q Consensus 294 eW~eG~fr~Glr~gDGvYeGeFy~NGdW~nG~Gk~~G~Gg~~YEGeWknGKrHG~Gvytf~DG~~~G~~YEGeFknGkkg 373 (873)
.+|+|.|++++.||.|++...+ |..|.|.|..+...
T Consensus 78 ----------------------------------------d~Y~g~F~s~~F~g~G~~~~~~----Gw~~~G~F~~Gq~~ 113 (139)
T COG4642 78 ----------------------------------------DIYEGPFNSGKFRGQGTRGSFN----GWLYIGRFTEGQAN 113 (139)
T ss_pred ----------------------------------------CeEeccccCccccceEeecccc----CCEEeeeecccccC
Confidence 1899999999999999999998 99999999998763
Q ss_pred cc----cccccchhhhH
Q 002855 374 CD----EETVALHAGLA 386 (873)
Q Consensus 374 cg----~~dGalyaG~a 386 (873)
.- ..++++|.|+.
T Consensus 114 g~g~l~~~~g~vy~G~f 130 (139)
T COG4642 114 GKGFLLKEDGSVYTGMF 130 (139)
T ss_pred CceeEEecCCcEEeeeE
Confidence 21 44566665543
No 7
>smart00698 MORN Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases.
Probab=97.14 E-value=0.00055 Score=49.66 Aligned_cols=21 Identities=43% Similarity=1.156 Sum_probs=20.2
Q ss_pred EEEEEEeCCceeeeEEEEEcC
Q 002855 335 RYAGQWKHGRMHGCGLYEINE 355 (873)
Q Consensus 335 ~YEGeWknGKrHG~Gvytf~D 355 (873)
+|+|+|++|++||.|+++|+|
T Consensus 2 ~Y~G~w~~g~~hG~G~~~~~d 22 (26)
T smart00698 2 RYEGEWRNGKRHGRGVYTYAN 22 (26)
T ss_pred eEEEEEECCeEEeeEEEEecc
Confidence 799999999999999999987
No 8
>smart00698 MORN Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases.
Probab=97.05 E-value=0.0008 Score=48.81 Aligned_cols=22 Identities=36% Similarity=0.657 Sum_probs=13.2
Q ss_pred EEEEEEECCeeeeeEEEEeeCC
Q 002855 217 SYEGTVWDDLAHGKGVYIAEQG 238 (873)
Q Consensus 217 ~YEGEWknGkrHGkGky~~~DG 238 (873)
+|+|+|.+|++||.|+++++|.
T Consensus 2 ~Y~G~w~~g~~hG~G~~~~~d~ 23 (26)
T smart00698 2 RYEGEWRNGKRHGRGVYTYANX 23 (26)
T ss_pred eEEEEEECCeEEeeEEEEeccc
Confidence 4666666666666666666543
No 9
>PF02493 MORN: MORN repeat; InterPro: IPR003409 The MORN (Membrane Occupation and Recognition Nexus) motif is found in multiple copies in several proteins including junctophilins (). The function of this motif is unknown.; PDB: 1H3I_B 1MT6_A 1N6C_A 3OS5_A 3M53_A 3M55_A 3CBP_A 4E47_B 3M58_A 3CBO_A ....
Probab=96.83 E-value=0.00094 Score=46.19 Aligned_cols=22 Identities=41% Similarity=0.607 Sum_probs=14.5
Q ss_pred EEEEEECCeeeeeEEEEeeCCC
Q 002855 218 YEGTVWDDLAHGKGVYIAEQGL 239 (873)
Q Consensus 218 YEGEWknGkrHGkGky~~~DGd 239 (873)
|+|+|.+|++||.|++++++|+
T Consensus 1 Y~G~~~~g~~~G~G~~~~~~G~ 22 (23)
T PF02493_consen 1 YEGEWKNGKKHGYGVYTFPDGD 22 (23)
T ss_dssp ECCEEETTEEECEEEEE-TTS-
T ss_pred CEEEEEECcccccEEEEeCCCC
Confidence 6677777777777777777764
No 10
>PF02493 MORN: MORN repeat; InterPro: IPR003409 The MORN (Membrane Occupation and Recognition Nexus) motif is found in multiple copies in several proteins including junctophilins (). The function of this motif is unknown.; PDB: 1H3I_B 1MT6_A 1N6C_A 3OS5_A 3M53_A 3M55_A 3CBP_A 4E47_B 3M58_A 3CBO_A ....
Probab=96.71 E-value=0.0012 Score=45.58 Aligned_cols=20 Identities=45% Similarity=1.225 Sum_probs=18.5
Q ss_pred EEEEEeCCceeeeEEEEEcC
Q 002855 336 YAGQWKHGRMHGCGLYEINE 355 (873)
Q Consensus 336 YEGeWknGKrHG~Gvytf~D 355 (873)
|+|+|++|++||.|+++++|
T Consensus 1 Y~G~~~~g~~~G~G~~~~~~ 20 (23)
T PF02493_consen 1 YEGEWKNGKKHGYGVYTFPD 20 (23)
T ss_dssp ECCEEETTEEECEEEEE-TT
T ss_pred CEEEEEECcccccEEEEeCC
Confidence 88999999999999999999
No 11
>COG2849 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.09 E-value=0.26 Score=52.01 Aligned_cols=143 Identities=10% Similarity=0.003 Sum_probs=91.9
Q ss_pred cccceEEEEecCCC-EEEEEEECCeeeeeEEEEeeCCCeEEEEEecCCeeeeeEEEEEecCCCc-eeEeEEeCCeeeeee
Q 002855 203 EFLTWVSYVFADGS-SYEGTVWDDLAHGKGVYIAEQGLVRYEGEWLQNNMEGHGVVEVDIPDIE-PVPGSKLEEEMRAEG 280 (873)
Q Consensus 203 ef~G~G~yif~DGS-~YEGEWknGkrHGkGky~~~DGdv~YEGEWkNGKrhG~Gv~~y~~pDGs-vYEGeWkNGKrHG~G 280 (873)
.|.|.....+.||. .+.-.++||+.+|.-+..+++|.+.=+-.|++|+.||.-+.+| ++|. .++..|+++++.|.-
T Consensus 84 ~~~g~~~~~~~ng~~~~~~~~kNG~~~g~~~~~y~nGk~~~~~~~~ng~~~G~~~~yy--~nG~~~~e~~~kn~~~~g~~ 161 (230)
T COG2849 84 PFTGIVEKYYENGELEAAIYYKNGKLDGETKEFYENGKLKSEYNYKNGKLHGIQKEYY--ENGKLKSETVYKNGKLEGIA 161 (230)
T ss_pred CCcceeeEeecCCeEEEEEEecCCceeeeEEEEEcCCcEeEEEEecCCcccceEEEEE--cCCCEEEEEEEeCCCccccE
Confidence 34444444555653 4667778888888888888888867777888888888888886 7776 678888888887777
Q ss_pred EEEecCCCCCcccceecccccCCeeecCcEEEcceeecCeeeccCceeecCCCeEEEEEEeCCceeeeEEEEEcCCCCCC
Q 002855 281 KIFSRDFMSPEDKKWLEMDIEDSIQLAGDEYEIPFYERNEWITEFGKKPEKGRYRYAGQWKHGRMHGCGLYEINERPIYG 360 (873)
Q Consensus 281 k~~~~dG~s~YeGeW~eG~fr~Glr~gDGvYeGeFy~NGdW~nG~Gk~~G~Gg~~YEGeWknGKrHG~Gvytf~DG~~~G 360 (873)
+.++.+|... .-....+|...|. +. .+...|....+..|++|+++|.=..+...| +
T Consensus 162 k~yy~nGkl~-----------~e~~~knG~~~G~------~k----~Y~enGkl~~e~~~kng~~~G~~~~yde~G---~ 217 (230)
T COG2849 162 KTYYENGKLL-----------SEVPYKNGKKNGV------VK----IYYENGKLVEEVTYKNGKLDGVVKEYDEAG---K 217 (230)
T ss_pred EEEcCCCcEE-----------EeecccCCcccce------EE----EEccCCCEeEEEEecCCcccccEEEEecCC---C
Confidence 7776664211 1111112221111 00 122455668889999999998888777663 4
Q ss_pred cEEEEEEecCc
Q 002855 361 RFYFGELLEDS 371 (873)
Q Consensus 361 ~~YEGeFknGk 371 (873)
.+-+..+.+|+
T Consensus 218 ~i~~~~y~~g~ 228 (230)
T COG2849 218 LIKETLYKNGK 228 (230)
T ss_pred EEEEEEeeCCc
Confidence 44555555544
No 12
>COG2849 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.93 E-value=1.8 Score=45.82 Aligned_cols=87 Identities=14% Similarity=0.071 Sum_probs=69.9
Q ss_pred EEEEecCCCEE-EEEEECCeeeeeEEEEeeCCCeEEEEEecCCeeeeeEEEEEecCCCc-eeEeEEeCCeeeeeeEEEec
Q 002855 208 VSYVFADGSSY-EGTVWDDLAHGKGVYIAEQGLVRYEGEWLQNNMEGHGVVEVDIPDIE-PVPGSKLEEEMRAEGKIFSR 285 (873)
Q Consensus 208 G~yif~DGS~Y-EGEWknGkrHGkGky~~~DGdv~YEGEWkNGKrhG~Gv~~y~~pDGs-vYEGeWkNGKrHG~Gk~~~~ 285 (873)
....|++|... +-.+.+|+.||.-+..+++|...++..|++++++|.-..+| ++|. .-+-.+++|++.|.-+.++.
T Consensus 113 ~~~~y~nGk~~~~~~~~ng~~~G~~~~yy~nG~~~~e~~~kn~~~~g~~k~yy--~nGkl~~e~~~knG~~~G~~k~Y~e 190 (230)
T COG2849 113 TKEFYENGKLKSEYNYKNGKLHGIQKEYYENGKLKSETVYKNGKLEGIAKTYY--ENGKLLSEVPYKNGKKNGVVKIYYE 190 (230)
T ss_pred EEEEEcCCcEeEEEEecCCcccceEEEEEcCCCEEEEEEEeCCCccccEEEEc--CCCcEEEeecccCCcccceEEEEcc
Confidence 33567888765 56778999999999999999999999999999988888875 8887 57778999999999888887
Q ss_pred CCCCCccccee
Q 002855 286 DFMSPEDKKWL 296 (873)
Q Consensus 286 dG~s~YeGeW~ 296 (873)
+|+...+..+.
T Consensus 191 nGkl~~e~~~k 201 (230)
T COG2849 191 NGKLVEEVTYK 201 (230)
T ss_pred CCCEeEEEEec
Confidence 76444444333
No 13
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=64.53 E-value=10 Score=47.10 Aligned_cols=88 Identities=28% Similarity=0.275 Sum_probs=44.5
Q ss_pred hhhhhccccchhhhhhchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcchhhhhccc
Q 002855 573 IAKGVENKLKPMMDKLGKWTEEKKKESEMKLQLYEKELELIEAELCLEEAIEEMDEELKKREEEEEKKAELGLEEEENLS 652 (873)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~e~e~~le~a~e~md~~l~~~e~eee~k~e~~l~~e~~~~ 652 (873)
..+.+-.++..|-+.|.+|.|+ .|++++.-|+++...|-|....+..|-|.+|-+.+.|+.|++...-++.|--+.
T Consensus 208 ~~kk~~Kgv~~~qe~La~~qe~----eE~qkreeEE~~r~eeEEer~~ee~E~~~eEak~kkKekekek~er~KaeGklL 283 (1064)
T KOG1144|consen 208 AEKKKPKGVRAMQEALAKRQEE----EERQKREEEERLRREEEEERRREEEEAQEEEAKEKKKEKEKEKKERKKAEGKLL 283 (1064)
T ss_pred cccccchhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 3344555577888889888763 233333344444444444444445555555555444444333333334444444
Q ss_pred cccCCCcccccc
Q 002855 653 ALSSQPEKATAE 664 (873)
Q Consensus 653 ~~~~~~~~~~ae 664 (873)
+-.+-++.+.|+
T Consensus 284 TakQK~~~a~ae 295 (1064)
T KOG1144|consen 284 TAKQKEEAALAE 295 (1064)
T ss_pred hHhhHHHHHHHH
Confidence 444444444443
No 14
>KOG3032 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.78 E-value=53 Score=36.00 Aligned_cols=25 Identities=32% Similarity=0.510 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhH
Q 002855 610 LELIEAELCLEEAIEEMDEELKKRE 634 (873)
Q Consensus 610 le~~e~e~~le~a~e~md~~l~~~e 634 (873)
++--|+...|+..|++.|||..-..
T Consensus 187 veEeeed~~l~reieeidEQi~~~k 211 (264)
T KOG3032|consen 187 VEEEEEDAALTREIEEIDEQISYKK 211 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556778888888888876543
No 15
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=58.20 E-value=24 Score=41.54 Aligned_cols=42 Identities=31% Similarity=0.326 Sum_probs=33.1
Q ss_pred hhhHhhhhhhccccchhhhhhchhhHHHhhHHHHHHHHHHHH
Q 002855 568 TTWTRIAKGVENKLKPMMDKLGKWTEEKKKESEMKLQLYEKE 609 (873)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (873)
++....-..+|+.+.-+-.||.||+.|++-+.|+-..|++..
T Consensus 371 ~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq 412 (493)
T KOG0804|consen 371 SDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQ 412 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 455677778888899999999999999988887766665443
No 16
>PHA03158 hypothetical protein; Provisional
Probab=47.19 E-value=67 Score=34.46 Aligned_cols=87 Identities=32% Similarity=0.497 Sum_probs=47.7
Q ss_pred EecCCCCCCCCCCCccccc--ccCcccccc-----------cc-cccccchhhHhhhhhhccccchhhhhhchhhHHHhh
Q 002855 532 FWQPPLKEGQEPDPEKIEF--LPLGFDEFY-----------GR-VVEEKETTWTRIAKGVENKLKPMMDKLGKWTEEKKK 597 (873)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-----------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (873)
.|||| .|-+|.+-++.| -||-|---| |. +.-..=.+|+||..+. -||-=+ |. +.
T Consensus 167 wWepp--kGa~vngk~i~f~d~PlPYTG~Yn~d~~r~V~vnG~~V~y~sLpf~ERl~Rs~----pPWCv~----t~--~E 234 (273)
T PHA03158 167 LWEAP--KGADVNGKKIKFDDPPLPYTGAYNDDGILMVNINGKHVRFDDLPFMERIKRSG----PPWCIK----TA--KE 234 (273)
T ss_pred cccCC--CCCccCCcccCCCCCCCCccccccCCCcEEEEecCEEEEeccCcHHHHHhccC----CCcEee----cH--HH
Confidence 59999 577888888766 244433322 33 3334456777766543 333111 11 12
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 002855 598 ESEMKLQLYEKEL---ELIEAELCLEEAIEEMDEEL 630 (873)
Q Consensus 598 ~~~~~~~~~~~~l---e~~e~e~~le~a~e~md~~l 630 (873)
...|++|++..+- .--|.|-+|||.||+++.-|
T Consensus 235 K~~~~kQllka~kkc~~~s~~~~~leeei~eleks~ 270 (273)
T PHA03158 235 KAAILKQLLKAAKKCCKNSEHEKELEEEIEELEKSL 270 (273)
T ss_pred hHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhh
Confidence 2345555544332 34577788888888776544
No 17
>PHA02562 46 endonuclease subunit; Provisional
Probab=44.37 E-value=70 Score=37.23 Aligned_cols=78 Identities=14% Similarity=0.236 Sum_probs=54.2
Q ss_pred cccccCc-ccccccccccccchhhHhhhhhhccccchhhhhhchhhHHHhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 002855 548 IEFLPLG-FDEFYGRVVEEKETTWTRIAKGVENKLKPMMDKLGKWTEEKKKESEMKLQLYEKELELIEAELC-LEEAIEE 625 (873)
Q Consensus 548 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~e~e~~-le~a~e~ 625 (873)
+++||-| |..||.-....+..+|.++..- -..+++.+...++-++.+.+++.++.+++.++.++. ++.++++
T Consensus 133 ~v~l~q~~f~~f~~~~~~er~~il~~l~~~------~~~~~~~~~~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~ 206 (562)
T PHA02562 133 IVVLGTAGYVPFMQLSAPARRKLVEDLLDI------SVLSEMDKLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEE 206 (562)
T ss_pred HheeccCchhhHhcCChHhHHHHHHHHhCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4456664 7888887666666777777651 256667777777778888888888888888888854 5555665
Q ss_pred HHHHHH
Q 002855 626 MDEELK 631 (873)
Q Consensus 626 md~~l~ 631 (873)
++.+++
T Consensus 207 ~~~~~~ 212 (562)
T PHA02562 207 QRKKNG 212 (562)
T ss_pred HHHHHH
Confidence 555443
No 18
>PLN03237 DNA topoisomerase 2; Provisional
Probab=40.74 E-value=2.9e+02 Score=37.42 Aligned_cols=14 Identities=36% Similarity=0.290 Sum_probs=10.3
Q ss_pred CcccccCCceEEec
Q 002855 500 SKLIYTEDPLILHT 513 (873)
Q Consensus 500 ~~~~~~~~~~~~~~ 513 (873)
..++.||=|+-+-|
T Consensus 908 ~~i~ITElP~~~~t 921 (1465)
T PLN03237 908 TTLRITELPIRRWT 921 (1465)
T ss_pred CeEEEEeCCCeecc
Confidence 46888888877655
No 19
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=39.57 E-value=1.1e+02 Score=37.92 Aligned_cols=31 Identities=13% Similarity=0.147 Sum_probs=17.0
Q ss_pred CCCCcccccccCCCcccccCCCCCCCCCCCcccccccc
Q 002855 687 APASFGSVSADENQTKDDQKGKRPGDSPFSSSSLSFAS 724 (873)
Q Consensus 687 ~p~sfgsv~~~~~~~~~~~~~~~~~~s~~sss~~~fas 724 (873)
.-.+||.+-|.-.+.+- ...+-++|++.|+.
T Consensus 371 ~~aei~Kffqk~~~k~~-------~~~~a~~s~~~f~p 401 (811)
T KOG4364|consen 371 HEAEIGKFFQKIDNKFS-------TTCEATVSDIRFEP 401 (811)
T ss_pred HHHHHHhhhcccccccC-------Cccccccccccccc
Confidence 44689998866542221 23444555555554
No 20
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=38.11 E-value=57 Score=32.50 Aligned_cols=18 Identities=28% Similarity=0.255 Sum_probs=12.2
Q ss_pred hhhhccccccCCCccccc
Q 002855 646 EEEENLSALSSQPEKATA 663 (873)
Q Consensus 646 ~~e~~~~~~~~~~~~~~a 663 (873)
..+|..-.++-++.|.+.
T Consensus 85 EldDLL~ll~Dle~K~~k 102 (136)
T PF04871_consen 85 ELDDLLVLLGDLEEKRKK 102 (136)
T ss_pred hHHHHHHHHHhHHHHHHH
Confidence 334445558888888887
No 21
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=36.87 E-value=1.3e+02 Score=34.05 Aligned_cols=43 Identities=23% Similarity=0.260 Sum_probs=27.1
Q ss_pred hhhhhchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002855 584 MMDKLGKWTEEKKKESEMKLQLYEKELELIEAELCLEEAIEEM 626 (873)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~e~e~~le~a~e~m 626 (873)
.-.+|.+|.++-+..-...+....+|.+.++..+..|..+...
T Consensus 118 te~~l~~y~~~n~~~I~~n~~~~~~e~~~~~~~~~~E~~~~~~ 160 (309)
T TIGR00570 118 TKKKIETYQKENKDVIQKNKEKSTREQEELEEALEFEKEEEEQ 160 (309)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3567777777776666666666666666666666555554444
No 22
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=33.50 E-value=89 Score=39.33 Aligned_cols=37 Identities=19% Similarity=0.391 Sum_probs=21.2
Q ss_pred CCCCeeeccCceeecCcccccee----ccCchhhhhHHHhH
Q 002855 414 PQHPYFYEEEDVWMAPGFINQFY----EVPDYWKTYVHEID 450 (873)
Q Consensus 414 ~q~py~YeeEdvw~~pgfi~q~y----~vP~~~e~~~~~~~ 450 (873)
.++.|.+-.--|+--||-..+|= .-|+..-.+|+-|+
T Consensus 744 ~q~DfkFGlTKVFFr~GKFaEFDqiMksDPe~m~~lv~kVn 784 (1259)
T KOG0163|consen 744 DQNDFKFGLTKVFFRPGKFAEFDQIMKSDPETMLELVAKVN 784 (1259)
T ss_pred CcccccccceeEeecCcchHHHHHHHhcCHHHHHHHHHHHH
Confidence 35555555545666666555543 35666666666665
No 23
>PF08004 DUF1699: Protein of unknown function (DUF1699); InterPro: IPR012546 This family contains many archaeal proteins which have very conserved sequences.
Probab=31.62 E-value=30 Score=34.62 Aligned_cols=30 Identities=33% Similarity=0.589 Sum_probs=24.0
Q ss_pred ccCceeecCccccceeccCchhhhhHHHhH
Q 002855 421 EEEDVWMAPGFINQFYEVPDYWKTYVHEID 450 (873)
Q Consensus 421 eeEdvw~~pgfi~q~y~vP~~~e~~~~~~~ 450 (873)
=+||||.|..-|++||.||+..=.-..++.
T Consensus 72 leGDVwGHRKDinEYy~i~~~vi~~I~el~ 101 (131)
T PF08004_consen 72 LEGDVWGHRKDINEYYEIPESVIERIKELK 101 (131)
T ss_pred eccccccccCCCcccccCCHHHHHHHHHHH
Confidence 478999999999999999987654444443
No 24
>KOG4156 consensus Claspin, protein mediating phosphorylation and activation of Chk1 protein kinase in the DNA replication checkpoint response [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=30.97 E-value=1.9e+02 Score=35.91 Aligned_cols=46 Identities=24% Similarity=0.203 Sum_probs=29.0
Q ss_pred eccccccccccchhhhccccccccccccccccchhcccc---ccccCCC
Q 002855 770 SFPLVLSEKRSLTAKMQTHRNFQTRNHANQRTSQLHSLS---RILTRPS 815 (873)
Q Consensus 770 ~fp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~s~~---r~l~~~s 815 (873)
+|-|-+-|.||-+.---+.++|++..--.-++||..||+ -.|+-||
T Consensus 785 ~~q~CnrqtgrgtsffptaggfrspsPG~F~aS~~s~~~~s~~~L~Eps 833 (1329)
T KOG4156|consen 785 SYQPCNRQTGRGTSFFPTAGGFRSPSPGLFRASLVSSASKSSGKLSEPS 833 (1329)
T ss_pred cccchhhccCCCccccccccccCCCCCccccccccccCcchhhhhcCCC
Confidence 455666677776666666677755444445678888884 4455555
No 25
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=28.98 E-value=1.1e+02 Score=34.41 Aligned_cols=89 Identities=27% Similarity=0.428 Sum_probs=53.0
Q ss_pred Ccceeee-cccccceEEEecCCCCCCCCCCCcccccccCcccccccccccccchhhHhhhhhhccccchhhhhhchhhHH
Q 002855 516 GRLINYI-EDEEHGVRLFWQPPLKEGQEPDPEKIEFLPLGFDEFYGRVVEEKETTWTRIAKGVENKLKPMMDKLGKWTEE 594 (873)
Q Consensus 516 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (873)
+|-..|. =-+.|||| ||- ||. |=-.--+||-.+.-|-+.+-+...-+-|.=-.--|=
T Consensus 37 rr~~rY~~C~dNHGik----PP~-------PEQ-----------YLTPLQQKEV~iRHLkakLkes~~~l~dRetEI~eL 94 (305)
T PF15290_consen 37 RRSGRYMSCGDNHGIK----PPN-------PEQ-----------YLTPLQQKEVCIRHLKAKLKESENRLHDRETEIDEL 94 (305)
T ss_pred CCCCceeecccCCCCC----CCC-------HHH-----------hcChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3445566 45789998 542 221 222234555555555444444433333322223334
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002855 595 KKKESEMKLQLYEKELELIEAELCLEEAIEEM 626 (873)
Q Consensus 595 ~~~~~~~~~~~~~~~le~~e~e~~le~a~e~m 626 (873)
|..-..|+-.|||+|---+||+|.|-||-.+.
T Consensus 95 ksQL~RMrEDWIEEECHRVEAQLALKEARkEI 126 (305)
T PF15290_consen 95 KSQLARMREDWIEEECHRVEAQLALKEARKEI 126 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566788889999999999999999986665
No 26
>KOG2147 consensus Nucleolar protein involved in 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=28.87 E-value=27 Score=43.23 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=19.1
Q ss_pred cceeecccceeeecccccccccccccC
Q 002855 846 NILSLHTPMCYLESYTDTIGIEPHRIA 872 (873)
Q Consensus 846 ~ilsl~~~~~~~~~~~~~~~~~~~~~~ 872 (873)
.|+-.++++-||...++....+|.+|.
T Consensus 604 ~~~~~lselL~l~a~~d~~~l~p~~L~ 630 (823)
T KOG2147|consen 604 EILKSLSELLCLPANYDVTKLEPQSLS 630 (823)
T ss_pred ccCCCcchhhccccccccccccccccc
Confidence 355667778888877777777777664
No 27
>COG4741 Predicted secreted endonuclease distantly related to archaeal Holliday junction resolvase [Nucleotide transport and metabolism]
Probab=27.41 E-value=2.3e+02 Score=29.66 Aligned_cols=47 Identities=28% Similarity=0.292 Sum_probs=36.5
Q ss_pred hchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 002855 588 LGKWTEEKKKESEMKLQLYEKELELIEAELCLEEAIEEMDEELKKRE 634 (873)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~le~~e~e~~le~a~e~md~~l~~~e 634 (873)
|-+---.-+..-|+|..-++..|.-.|.|.-+-+|+.-.++++|++|
T Consensus 20 l~~~Ir~lq~~~e~k~~~l~e~l~~~e~~r~v~ea~~~ke~~~Kl~E 66 (175)
T COG4741 20 LRAYIRSLQGKVESKARELEETLQKAERERLVNEAQARKEEEWKLKE 66 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445566778888888889988889888889888888888886
No 28
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=26.18 E-value=2.6e+02 Score=30.77 Aligned_cols=74 Identities=27% Similarity=0.343 Sum_probs=48.9
Q ss_pred hhhHhhhhhhccccchhhhhhchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHhcc
Q 002855 568 TTWTRIAKGVENKLKPMMDKLGKWTEEKKKESEMKLQLYEKELELIEAELCLEEAIEEMDE-ELKKREEEEEKKAELG 644 (873)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~e~e~~le~a~e~md~-~l~~~e~eee~k~e~~ 644 (873)
++|++=+..++..+-.+++.+++=+. +....+.++...|=.+.|++..++++|...++ -....++.++.+++|.
T Consensus 99 ~~ak~r~~~le~el~~l~~~~~~l~~---~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~ 173 (239)
T COG1579 99 QIAKERINSLEDELAELMEEIEKLEK---EIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLD 173 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45666666666666677766666554 44555666666677777788888888888877 4455666666666653
No 29
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=25.87 E-value=1.8e+02 Score=34.71 Aligned_cols=14 Identities=7% Similarity=-0.379 Sum_probs=10.6
Q ss_pred CCCcccCCCCCCcc
Q 002855 752 TTPCVGDWKDDLVH 765 (873)
Q Consensus 752 ~~~~~~~~~~~~~~ 765 (873)
||---+||+--||+
T Consensus 186 tP~LPDSTDFVCGT 199 (458)
T PF10446_consen 186 TPELPDSTDFVCGT 199 (458)
T ss_pred CCCCCCcccccCCC
Confidence 45555888999999
No 30
>PLN02372 violaxanthin de-epoxidase
Probab=25.33 E-value=2.3e+02 Score=33.65 Aligned_cols=37 Identities=30% Similarity=0.376 Sum_probs=23.2
Q ss_pred hhhccccch---hhhhhchhhHHHhhHHHHHHHHHHHHHH
Q 002855 575 KGVENKLKP---MMDKLGKWTEEKKKESEMKLQLYEKELE 611 (873)
Q Consensus 575 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~le 611 (873)
..+.|.|+| +++.|+|=-|+..|.-....+++++|++
T Consensus 350 ~~tDNsCgpep~l~~~l~~~~e~~e~~i~~e~~~~~~e~~ 389 (455)
T PLN02372 350 VRTDNTCGPEPPLLERLEKDVEEGEKTIVKEARQIEEELE 389 (455)
T ss_pred eeeCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677864 6888888777666655555555555444
No 31
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=24.05 E-value=1.9e+02 Score=28.73 Aligned_cols=37 Identities=35% Similarity=0.436 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh
Q 002855 597 KESEMKLQLYEKELELIEAEL-CLEEAIEEMDEELKKR 633 (873)
Q Consensus 597 ~~~~~~~~~~~~~le~~e~e~-~le~a~e~md~~l~~~ 633 (873)
.+-++-+.-..+-|++|.+|+ .+|.+|+||.+++.+.
T Consensus 65 qel~EAr~nV~kRlefI~~Eikr~e~~i~d~q~e~~k~ 102 (120)
T KOG3478|consen 65 QELEEARTNVGKRLEFISKEIKRLENQIRDSQEEFEKQ 102 (120)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666778899999995 5899999999998654
No 32
>PF04220 YihI: Der GTPase activator (YihI); InterPro: IPR007336 This entry contains Escherichia coli (strain K12) YihI. YihI activates the GTPase activity of Der, a 50S ribosomal subunit stability factor and can therefore be considered a GAP (GTPase activating)-like protein. The stimulation is specific to Der as YihI does not stimulate the GTPase activity of Era or ObgE. The interaction of YihI with Der requires only the C-terminal 78 amino acids of YihI []. A yihI deletion mutant is viable and shows a shorter lag period, but the same post-lag growth rate as a wild-type strain. yihI is expressed during the lag period. Overexpression of yihI inhibits cell growth and biogenesis of the 50S ribosomal subunit []. YihI is an unusual, highly hydrophilic protein with an uneven distribution of charged residues, resulting in an N-terminal region with high pI and a C-terminal region with low pI [].
Probab=23.50 E-value=1.3e+02 Score=31.44 Aligned_cols=43 Identities=35% Similarity=0.587 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--H---------HhhHHHHHHHHhcchhhh
Q 002855 606 YEKELELIEAELCLEEAIEEMDEE--L---------KKREEEEEKKAELGLEEE 648 (873)
Q Consensus 606 ~~~~le~~e~e~~le~a~e~md~~--l---------~~~e~eee~k~e~~l~~e 648 (873)
-|+||+.+|+-.||-.-++-+|+- | ++-..-+++=.++|+.++
T Consensus 97 pEqEL~~LEnD~rL~~LLdrle~Ge~Ls~~dQ~yvD~~LdRi~~Lm~~LGi~~d 150 (169)
T PF04220_consen 97 PEQELEMLENDERLNQLLDRLEEGETLSAEDQKYVDEKLDRIEELMEELGIEDD 150 (169)
T ss_pred HHHHHHHhhccHHHHHHHHHHHCCCcCCHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 789999999999998888777631 1 111234566778888777
No 33
>KOG4031 consensus Vesicle coat protein clathrin, light chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.38 E-value=3.2e+02 Score=29.71 Aligned_cols=43 Identities=30% Similarity=0.399 Sum_probs=23.9
Q ss_pred hhhhchhhHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002855 585 MDKLGKWTEEKKKESEMKLQLY-EKELELIEAELCLEEAIEEMDEELKKR 633 (873)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~-~~~le~~e~e~~le~a~e~md~~l~~~ 633 (873)
-+++.||+|++++.-++|-..- ..+-|| -+.|++++|+=++.+
T Consensus 105 pE~IRkWkeeQ~~rl~ekD~~sek~k~El------rekAkKelddwy~~~ 148 (216)
T KOG4031|consen 105 PEKIRKWKEEQMKRLQEKDEASEKLKEEL------REKAKKELDDWYDQQ 148 (216)
T ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHHHHH------HHHHHHHHHHHHHHH
Confidence 4788999998876544432211 111122 245777777655544
No 34
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=22.02 E-value=98 Score=38.70 Aligned_cols=41 Identities=22% Similarity=0.312 Sum_probs=28.5
Q ss_pred ccccccccccccccccccchhhhhccccCCCCcccccccCC
Q 002855 659 EKATAEVGRDEVKVEEGEEEEEEEEEEDAPASFGSVSADEN 699 (873)
Q Consensus 659 ~~~~ae~~~~~~~~~e~e~e~~e~~~d~~p~sfgsv~~~~~ 699 (873)
+++..|++.+++.+++++++++++++.-.-.+-+.++.+..
T Consensus 240 ~~~e~e~e~~~~de~~e~~~~~~d~d~i~E~~~~~i~~s~~ 280 (822)
T KOG2141|consen 240 DEDESEDEKDSVDEEEESEEDNEDDDGISEISNSEIRDSAL 280 (822)
T ss_pred ccchhhhhccchhhhhhhhhcccCCccccccccccccCCcc
Confidence 33444555566666667777777777778888899987766
No 35
>PLN03086 PRLI-interacting factor K; Provisional
Probab=21.28 E-value=2.7e+02 Score=34.13 Aligned_cols=54 Identities=20% Similarity=0.144 Sum_probs=35.5
Q ss_pred hhchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 002855 587 KLGKWTEEKKKESEMKLQLYEKELELIEAELCLEEAIEEMDEELKKREEEEEKK 640 (873)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~le~~e~e~~le~a~e~md~~l~~~e~eee~k 640 (873)
.-+||..|+|+..+.-+.-+++|-+.-|+-.+--||||..--+-+...++...|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (567)
T PLN03086 8 AREKLEREQRERKQRAKLKLERERKAKEEAAKQREAIEAAQRSRRLDAIEAQIK 61 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888877777777788888776666666667776655555544444433
No 36
>PTZ00121 MAEBL; Provisional
Probab=20.36 E-value=2.4e+02 Score=38.17 Aligned_cols=20 Identities=45% Similarity=0.504 Sum_probs=10.3
Q ss_pred HHHhhHHHHHHHHhcchhhh
Q 002855 629 ELKKREEEEEKKAELGLEEE 648 (873)
Q Consensus 629 ~l~~~e~eee~k~e~~l~~e 648 (873)
|+++++.|+.+|++-+-+.|
T Consensus 1665 EeaKk~EEekKKaEe~kk~~ 1684 (2084)
T PTZ00121 1665 EEAKKAEEDKKKAEEAKKAE 1684 (2084)
T ss_pred HHHHHHHHHHHHHHHHhhhh
Confidence 44455555555555544433
Done!