Query 002855
Match_columns 873
No_of_seqs 264 out of 1688
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 04:14:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002855.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002855hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h3i_A Histone H3 lysine 4 spe 99.9 6.8E-24 2.3E-28 220.9 13.9 136 211-375 1-142 (293)
2 1h3i_A Histone H3 lysine 4 spe 99.8 8E-20 2.7E-24 190.3 10.2 125 234-387 1-135 (293)
3 2f69_A Histone-lysine N-methyl 98.9 9.2E-10 3.1E-14 114.7 5.3 55 220-277 3-60 (261)
4 2f69_A Histone-lysine N-methyl 98.6 1.6E-08 5.5E-13 105.4 2.6 54 243-298 2-57 (261)
5 1lq7_A Alpha3W; three helix bu 32.1 34 0.0012 28.7 3.2 27 574-600 11-43 (67)
6 1a92_A Delta antigen; leucine 16.8 1.6E+02 0.0055 24.2 4.3 29 586-614 4-34 (50)
7 3t97_C Nuclear pore glycoprote 16.0 49 0.0017 28.2 1.2 33 601-633 26-59 (64)
8 3htk_B Structural maintenance 15.7 4.3E+02 0.015 22.3 7.1 50 581-630 17-69 (73)
9 1f5n_A Interferon-induced guan 14.7 3.4E+02 0.012 31.5 8.1 63 563-625 454-519 (592)
10 2i1j_A Moesin; FERM, coiled-co 13.8 1.3E+02 0.0043 34.8 4.2 39 599-637 340-379 (575)
No 1
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A
Probab=99.90 E-value=6.8e-24 Score=220.85 Aligned_cols=136 Identities=24% Similarity=0.192 Sum_probs=116.8
Q ss_pred EecCCCEEEEEEECCeeeeeEEEEeeCCCeEEEEEecCCeeeeeEEEEEecCCCc-eeEeEEeCCeeeeeeEEEecCCCC
Q 002855 211 VFADGSSYEGTVWDDLAHGKGVYIAEQGLVRYEGEWLQNNMEGHGVVEVDIPDIE-PVPGSKLEEEMRAEGKIFSRDFMS 289 (873)
Q Consensus 211 if~DGS~YEGEWknGkrHGkGky~~~DGdv~YEGEWkNGKrhG~Gv~~y~~pDGs-vYEGeWkNGKrHG~Gk~~~~dG~s 289 (873)
+|+||++|+|+|++|++||+|++++++|. +|+|+|++|++||.|+++| +||. +|+|+|++|++||.|++++.++ .
T Consensus 1 ~~~~G~~Y~G~~~~g~~~G~G~~~~~~G~-~Y~G~~~~g~~~G~G~~~~--~~G~~~y~G~~~~g~~~G~G~~~~~~G-~ 76 (293)
T 1h3i_A 1 FFFDGSTLEGYYVDDALQGQGVYTYEDGG-VLQGTYVDGELNGPAQEYD--TDGRLIFKGQYKDNIRHGVCWIYYPDG-G 76 (293)
T ss_dssp CCSSSCCCCEEEETTEEEEEEEEECTTSC-EEEEEEETTEEEEEEEEEC--SSSCEEEEEEEETTEECSEEEEECTTS-C
T ss_pred CcCCCCEEEEEEECCEeeEEEEEEECCCC-EEEEEEECCEEEeCEEEEE--CCCCEEEEEEEECCEEEeeEEEEECCC-C
Confidence 47999999999999999999999999998 9999999999999999995 9999 9999999999999999998875 2
Q ss_pred CcccceecccccCCeeecCcEEEcceeecCeeeccC-ceeecCCCe-EEEEEEeCCcee-eeEEEE--EcCCCCCCcEEE
Q 002855 290 PEDKKWLEMDIEDSIQLAGDEYEIPFYERNEWITEF-GKKPEKGRY-RYAGQWKHGRMH-GCGLYE--INERPIYGRFYF 364 (873)
Q Consensus 290 ~YeGeW~eG~fr~Glr~gDGvYeGeFy~NGdW~nG~-Gk~~G~Gg~-~YEGeWknGKrH-G~Gvyt--f~DG~~~G~~YE 364 (873)
+|.|.|..+|. ++|. |++.+.++. +|+|.|++|++| |.|+++ +++ |..+.
T Consensus 77 --------------------~y~G~~~~~g~-~~G~gG~~~~~~G~~~y~G~~~~g~~~~G~~~~~~~~~~----g~~~~ 131 (293)
T 1h3i_A 77 --------------------SLVGEVNEDGE-MTGEKIAYVYPDERTALYGKFIDGEMIEGKLATLMSTEE----GRPHF 131 (293)
T ss_dssp --------------------EEEEECCTTSC-SCEEEEEEECTTSSEEEEEEEETTEEEEEEEEEEEECTT----TSCEE
T ss_pred --------------------EEEEEEeECCe-EeCCeEEEEECCCCEEEEEEEECCEEEccceEEEEecCC----cceEE
Confidence 34444431222 6777 777766665 699999999999 999998 677 99999
Q ss_pred EEEecCccccc
Q 002855 365 GELLEDSEGCD 375 (873)
Q Consensus 365 GeFknGkkgcg 375 (873)
|.|.++...+.
T Consensus 132 g~w~~g~~~~~ 142 (293)
T 1h3i_A 132 ELMPGNSVYHF 142 (293)
T ss_dssp EECSSCCEECC
T ss_pred eEEcCCceEEe
Confidence 99999886433
No 2
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A
Probab=99.80 E-value=8e-20 Score=190.33 Aligned_cols=125 Identities=17% Similarity=0.186 Sum_probs=104.6
Q ss_pred EeeCCCeEEEEEecCCeeeeeEEEEEecCCCceeEeEEeCCeeeeeeEEEecCCCCCcccceecccccCCeeecCcEEEc
Q 002855 234 IAEQGLVRYEGEWLQNNMEGHGVVEVDIPDIEPVPGSKLEEEMRAEGKIFSRDFMSPEDKKWLEMDIEDSIQLAGDEYEI 313 (873)
Q Consensus 234 ~~~DGdv~YEGEWkNGKrhG~Gv~~y~~pDGsvYEGeWkNGKrHG~Gk~~~~dG~s~YeGeW~eG~fr~Glr~gDGvYeG 313 (873)
+|+||. +|+|+|++|++||+|+++| +||.+|+|+|++|++||.|+++++++...|+|+|.+
T Consensus 1 ~~~~G~-~Y~G~~~~g~~~G~G~~~~--~~G~~Y~G~~~~g~~~G~G~~~~~~G~~~y~G~~~~---------------- 61 (293)
T 1h3i_A 1 FFFDGS-TLEGYYVDDALQGQGVYTY--EDGGVLQGTYVDGELNGPAQEYDTDGRLIFKGQYKD---------------- 61 (293)
T ss_dssp CCSSSC-CCCEEEETTEEEEEEEEEC--TTSCEEEEEEETTEEEEEEEEECSSSCEEEEEEEET----------------
T ss_pred CcCCCC-EEEEEEECCEeeEEEEEEE--CCCCEEEEEEECCEEEeCEEEEECCCCEEEEEEEEC----------------
Confidence 478998 9999999999999999995 999999999999999999999999873356666652
Q ss_pred ceeecCeeeccCceeecCCCeEEEEEEe-CCceeee-EEEEEcCCCCCCc-EEEEEEecCccccc-------cccccchh
Q 002855 314 PFYERNEWITEFGKKPEKGRYRYAGQWK-HGRMHGC-GLYEINERPIYGR-FYFGELLEDSEGCD-------EETVALHA 383 (873)
Q Consensus 314 eFy~NGdW~nG~Gk~~G~Gg~~YEGeWk-nGKrHG~-Gvytf~DG~~~G~-~YEGeFknGkkgcg-------~~dGalya 383 (873)
| -+||.|++.+.++.+|+|+|+ +|++||. |+++++| |. .|+|.|++|++.++ ..+|.++.
T Consensus 62 -----g-~~~G~G~~~~~~G~~y~G~~~~~g~~~G~gG~~~~~~----G~~~y~G~~~~g~~~~G~~~~~~~~~~g~~~~ 131 (293)
T 1h3i_A 62 -----N-IRHGVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPD----ERTALYGKFIDGEMIEGKLATLMSTEEGRPHF 131 (293)
T ss_dssp -----T-EECSEEEEECTTSCEEEEECCTTSCSCEEEEEEECTT----SSEEEEEEEETTEEEEEEEEEEEECTTTSCEE
T ss_pred -----C-EEEeeEEEEECCCCEEEEEEeECCeEeCCeEEEEECC----CCEEEEEEEECCEEEccceEEEEecCCcceEE
Confidence 2 157778877777779999999 9999999 9999999 88 69999999997533 23666666
Q ss_pred hhHH
Q 002855 384 GLAE 387 (873)
Q Consensus 384 G~ae 387 (873)
|+|.
T Consensus 132 g~w~ 135 (293)
T 1h3i_A 132 ELMP 135 (293)
T ss_dssp EECS
T ss_pred eEEc
Confidence 6653
No 3
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*
Probab=98.89 E-value=9.2e-10 Score=114.74 Aligned_cols=55 Identities=24% Similarity=0.214 Sum_probs=44.8
Q ss_pred EEEECCeeeeeEEEEeeCCCeEEEEEec-CCeeeee-EEEEEecCCCce-eEeEEeCCeee
Q 002855 220 GTVWDDLAHGKGVYIAEQGLVRYEGEWL-QNNMEGH-GVVEVDIPDIEP-VPGSKLEEEMR 277 (873)
Q Consensus 220 GEWknGkrHGkGky~~~DGdv~YEGEWk-NGKrhG~-Gv~~y~~pDGsv-YEGeWkNGKrH 277 (873)
|+|++|++||.|+++++||. +|+|+|. +|.+||. |+|+| +||.+ |.|+|.+|.+.
T Consensus 3 g~~~~~~~~G~g~~~~~dG~-~y~G~~~~~~~~~G~~g~y~y--~d~~~~~~G~~~~g~~~ 60 (261)
T 2f69_A 3 MGYKDNIRHGVCWIYYPDGG-SLVGEVNEDGEMTGEKIAYVY--PDERTALYGKFIDGEMI 60 (261)
T ss_dssp --------CCCEEEECTTSC-EEEECCCTTSCCCEEEEEEEC--TTSSEEEEEEEETTEEE
T ss_pred ceecCCceecceEEEeCCCC-EEEEEEeeCCcCccceEEEEe--CCCCEEEEEEEeCCcEe
Confidence 89999999999999999998 9999999 9999999 99996 99998 99999999883
No 4
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*
Probab=98.56 E-value=1.6e-08 Score=105.42 Aligned_cols=54 Identities=19% Similarity=0.098 Sum_probs=40.6
Q ss_pred EEEecCCeeeeeEEEEEecCCCceeEeEEe-CCeeeee-eEEEecCCCCCcccceecc
Q 002855 243 EGEWLQNNMEGHGVVEVDIPDIEPVPGSKL-EEEMRAE-GKIFSRDFMSPEDKKWLEM 298 (873)
Q Consensus 243 EGEWkNGKrhG~Gv~~y~~pDGsvYEGeWk-NGKrHG~-Gk~~~~dG~s~YeGeW~eG 298 (873)
.|+|++|++||.|+++| |||.+|+|+|. +|.+||+ |+++++|+...|.|.|.+|
T Consensus 2 ~g~~~~~~~~G~g~~~~--~dG~~y~G~~~~~~~~~G~~g~y~y~d~~~~~~G~~~~g 57 (261)
T 2f69_A 2 AMGYKDNIRHGVCWIYY--PDGGSLVGEVNEDGEMTGEKIAYVYPDERTALYGKFIDG 57 (261)
T ss_dssp ---------CCCEEEEC--TTSCEEEECCCTTSCCCEEEEEEECTTSSEEEEEEEETT
T ss_pred CceecCCceecceEEEe--CCCCEEEEEEeeCCcCccceEEEEeCCCCEEEEEEEeCC
Confidence 48999999999999996 99999999999 9999999 9999999855588888743
No 5
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=32.07 E-value=34 Score=28.72 Aligned_cols=27 Identities=44% Similarity=0.735 Sum_probs=13.2
Q ss_pred hhhhccccchh-----hhhhch-hhHHHhhHHH
Q 002855 574 AKGVENKLKPM-----MDKLGK-WTEEKKKESE 600 (873)
Q Consensus 574 ~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~ 600 (873)
++++|..+|.+ ++.|.| |.|-|||..|
T Consensus 11 vkaleekvkalggggrieelkkkweelkkkiee 43 (67)
T 1lq7_A 11 VKALEEKVKALGGGGRIEELKKKWEELKKKIEE 43 (67)
T ss_dssp HHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHH
Confidence 34444444444 333433 6666666554
No 6
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=16.76 E-value=1.6e+02 Score=24.20 Aligned_cols=29 Identities=31% Similarity=0.594 Sum_probs=18.8
Q ss_pred hhhchhhHHHhhHHHHHHHH--HHHHHHHHH
Q 002855 586 DKLGKWTEEKKKESEMKLQL--YEKELELIE 614 (873)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~--~~~~le~~e 614 (873)
+-|++|-...||..+..+.| +.+.++-+|
T Consensus 4 e~LeqWv~~Rkk~eeler~lrk~kk~iKklE 34 (50)
T 1a92_A 4 DILEQWVSGRKKLEELERDLRKLKKKIKKLE 34 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 56899999888877665554 344444433
No 7
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=15.95 E-value=49 Score=28.24 Aligned_cols=33 Identities=21% Similarity=0.456 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh
Q 002855 601 MKLQLYEKELELIEAE-LCLEEAIEEMDEELKKR 633 (873)
Q Consensus 601 ~~~~~~~~~le~~e~e-~~le~a~e~md~~l~~~ 633 (873)
....-++++|.+||++ -.||..+..+|.+++..
T Consensus 26 ~~Q~~ldq~Ld~Ie~QQ~ELe~~L~~~E~~v~~~ 59 (64)
T 3t97_C 26 LDQKRLDQELDFILSQQKELEDLLSPLEESVKEQ 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHTTTTTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3445589999999998 88999998888877643
No 8
>3htk_B Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=15.67 E-value=4.3e+02 Score=22.27 Aligned_cols=50 Identities=18% Similarity=0.201 Sum_probs=33.4
Q ss_pred cchhhhhhchhhHHHhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 002855 581 LKPMMDKLGKWTEEKKKESEMKLQLYEKELELIEAE---LCLEEAIEEMDEEL 630 (873)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~e~e---~~le~a~e~md~~l 630 (873)
+.-..+.|-+-..--++..+-.++|...++..+|++ .++++-|..+++..
T Consensus 17 ~~~~~~~l~~~~~~~~~l~~~~~el~~~~i~~lE~~N~~~s~~~li~~~~~r~ 69 (73)
T 3htk_B 17 LLKQRHLLSKMASSMKSLKNCQKELISTQILQFEAQNMDVSMNDVIGFFNERE 69 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHhHHHHHHHHHHHHH
Confidence 333344445555555677778889999999999998 66666665555443
No 9
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=14.71 E-value=3.4e+02 Score=31.46 Aligned_cols=63 Identities=14% Similarity=0.124 Sum_probs=31.8
Q ss_pred ccccchhhHhhhhhhccccchhhhhhchhhHHHhh--HHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 002855 563 VEEKETTWTRIAKGVENKLKPMMDKLGKWTEEKKK--ESEMKLQLYEKELELIEAE-LCLEEAIEE 625 (873)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~le~~e~e-~~le~a~e~ 625 (873)
-++++..++.++...+....-++..-.+-|+..|. ++..|+..+|++.+..|.. ..+|.-||+
T Consensus 454 g~~~~~vl~~fl~~~~~~~~~ilq~d~~l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~ 519 (592)
T 1f5n_A 454 GIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQ 519 (592)
T ss_dssp CTTHHHHHHHHHHHTHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777766655555554443444544333 3334444566555544432 444444444
No 10
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=13.77 E-value=1.3e+02 Score=34.76 Aligned_cols=39 Identities=21% Similarity=0.359 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHHHH
Q 002855 599 SEMKLQLYEKELELIEAE-LCLEEAIEEMDEELKKREEEE 637 (873)
Q Consensus 599 ~~~~~~~~~~~le~~e~e-~~le~a~e~md~~l~~~e~ee 637 (873)
-+++.+-+++|++.+.++ .+-+++++.|+++++..|.|.
T Consensus 340 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~ 379 (575)
T 2i1j_A 340 YQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAK 379 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555 455666777777777665443
Done!