Query 002855
Match_columns 873
No_of_seqs 264 out of 1688
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 04:15:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002855.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/002855hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2f69a1 b.76.2.1 (A:116-193) H 32.5 30 0.0022 28.6 5.2 41 210-250 6-48 (78)
2 d2f69a1 b.76.2.1 (A:116-193) H 20.8 89 0.0065 25.7 6.0 47 228-276 1-49 (78)
3 d1ykhb1 a.252.1.1 (B:2-130) RN 14.1 1.3E+02 0.0093 26.4 5.9 38 591-633 84-121 (129)
4 d1k4ta1 a.2.8.1 (A:641-712) Eu 11.4 3.6E+02 0.026 21.7 7.8 37 606-642 21-70 (72)
5 d1pn0a3 d.16.1.2 (A:241-341) P 9.3 88 0.0064 26.5 3.0 27 509-536 26-53 (101)
6 d1wfoa1 b.1.2.1 (A:8-124) Side 8.4 1.2E+02 0.0086 24.1 3.4 28 525-561 33-60 (117)
7 d1cd9b2 b.1.2.1 (B:108-213) Gr 7.3 1.2E+02 0.0086 23.9 2.8 33 507-541 4-36 (106)
8 d2hg7a1 d.186.2.1 (A:1-60) Pha 6.6 67 0.0049 25.3 0.7 18 463-480 36-53 (60)
9 d2azeb1 e.63.1.2 (B:201-301) T 5.6 4.9E+02 0.036 21.6 6.0 61 602-663 2-64 (101)
10 d2vkwa2 b.1.2.1 (A:601-693) Ne 5.4 2.1E+02 0.015 21.7 3.2 22 522-543 10-31 (93)
No 1
>d2f69a1 b.76.2.1 (A:116-193) Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.46 E-value=30 Score=28.63 Aligned_cols=41 Identities=22% Similarity=0.423 Sum_probs=22.5
Q ss_pred EEecCCCEEEEEEE-CCeeeeeEE-EEeeCCCeEEEEEecCCe
Q 002855 210 YVFADGSSYEGTVW-DDLAHGKGV-YIAEQGLVRYEGEWLQNN 250 (873)
Q Consensus 210 yif~DGS~YEGEWk-nGkrHGkGk-y~~~DGdv~YEGEWkNGK 250 (873)
+.|+||..-.|++. +|...|.-+ |+|||++..+-|.|.+|.
T Consensus 6 ~y~pdGGslvG~vne~gEmtGd~IAYvYPD~~talyGsF~dge 48 (78)
T d2f69a1 6 IYYPDGGSLVGEVNEDGEMTGEKIAYVYPDERTALYGKFIDGE 48 (78)
T ss_dssp EECTTSCEEEECCCTTSCCCEEEEEEECTTSSEEEEEEEETTE
T ss_pred EEeCCCCEEEeeecCCCccccceEEEEcCCCeEEEEEEeeccc
Confidence 45566666666663 355555544 455666544555555443
No 2
>d2f69a1 b.76.2.1 (A:116-193) Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.77 E-value=89 Score=25.72 Aligned_cols=47 Identities=28% Similarity=0.345 Sum_probs=38.7
Q ss_pred eeeEEEEeeCCCeEEEEEe-cCCeeeeeEEEEEecCCCc-eeEeEEeCCee
Q 002855 228 HGKGVYIAEQGLVRYEGEW-LQNNMEGHGVVEVDIPDIE-PVPGSKLEEEM 276 (873)
Q Consensus 228 HGkGky~~~DGdv~YEGEW-kNGKrhG~Gv~~y~~pDGs-vYEGeWkNGKr 276 (873)
||.--+++++|. ...|+- .+|.+.|.-+-+. +||+. .+.|.|.+|.+
T Consensus 1 ~G~Cw~y~pdGG-slvG~vne~gEmtGd~IAYv-YPD~~talyGsF~dgem 49 (78)
T d2f69a1 1 HGVCWIYYPDGG-SLVGEVNEDGEMTGEKIAYV-YPDERTALYGKFIDGEM 49 (78)
T ss_dssp CCCEEEECTTSC-EEEECCCTTSCCCEEEEEEE-CTTSSEEEEEEEETTEE
T ss_pred CceeEEEeCCCC-EEEeeecCCCccccceEEEE-cCCCeEEEEEEeeccce
Confidence 577778899997 899988 6789999988765 79986 68899988865
No 3
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=14.13 E-value=1.3e+02 Score=26.35 Aligned_cols=38 Identities=24% Similarity=0.300 Sum_probs=25.3
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002855 591 WTEEKKKESEMKLQLYEKELELIEAELCLEEAIEEMDEELKKR 633 (873)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~le~~e~e~~le~a~e~md~~l~~~ 633 (873)
+++ .+...+++-+++|+ -+++.+|+++|.+.|+.|++=
T Consensus 84 ~se---e~Q~~~i~~Le~E~--~~~~~el~~~v~e~e~ll~~i 121 (129)
T d1ykhb1 84 VSA---EEQLRKIDMLQKKL--VEVEDEKIEAIKKKEKLMRHV 121 (129)
T ss_dssp CCH---HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCH---HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 555 33444555555555 456667889999999998865
No 4
>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I, dispensable insert domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.45 E-value=3.6e+02 Score=21.66 Aligned_cols=37 Identities=22% Similarity=0.367 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHH-------------HHHHHHHHHHHHHhhHHHHHHHHh
Q 002855 606 YEKELELIEAELC-------------LEEAIEEMDEELKKREEEEEKKAE 642 (873)
Q Consensus 606 ~~~~le~~e~e~~-------------le~a~e~md~~l~~~e~eee~k~e 642 (873)
+++||.-+.++.. .--+++-+++||.+-|..+-++.|
T Consensus 21 a~~e~K~ak~d~k~~~~~k~k~~~ekKkK~leRL~EQL~KLevqaTDkeE 70 (72)
T d1k4ta1 21 ARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREE 70 (72)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 5556666665543 667899999999988777666654
No 5
>d1pn0a3 d.16.1.2 (A:241-341) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}
Probab=9.30 E-value=88 Score=26.54 Aligned_cols=27 Identities=26% Similarity=0.452 Sum_probs=22.6
Q ss_pred eEEecCC-CcceeeecccccceEEEecCC
Q 002855 509 LILHTPT-GRLINYIEDEEHGVRLFWQPP 536 (873)
Q Consensus 509 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 536 (873)
.++|+++ |.|+ +|--|...+||+.|=+
T Consensus 26 ~~I~S~~~G~vl-~IPRE~~l~R~Yv~l~ 53 (101)
T d1pn0a3 26 CAIHSAESGSIM-IIPRENNLVRFYVQLQ 53 (101)
T ss_dssp EEEECSSSCEEE-EEECSTTCEEEEEEEC
T ss_pred EEEEeCCCCcEE-EEECCCCcEEEEEEcC
Confidence 5899975 8876 8999999999999853
No 6
>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.45 E-value=1.2e+02 Score=24.10 Aligned_cols=28 Identities=29% Similarity=0.451 Sum_probs=18.8
Q ss_pred cccceEEEecCCCCCCCCCCCcccccccCcccccccc
Q 002855 525 EEHGVRLFWQPPLKEGQEPDPEKIEFLPLGFDEFYGR 561 (873)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (873)
...-|.|.|+||..++.. .+||.=+|-.
T Consensus 33 ~~~sv~v~W~~P~~~~g~---------i~~Y~i~y~~ 60 (117)
T d1wfoa1 33 RTTSVRLIWQPPAAPNGI---------ILAYQITHRL 60 (117)
T ss_dssp CSSEEEEECCCCSCCCSC---------CCEEEEEEEE
T ss_pred cCCEEEEEEECCCCCCCc---------eEEEeeeeee
Confidence 345699999999877652 2466666643
No 7
>d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.30 E-value=1.2e+02 Score=23.93 Aligned_cols=33 Identities=15% Similarity=0.310 Sum_probs=20.3
Q ss_pred CceEEecCCCcceeeecccccceEEEecCCCCCCC
Q 002855 507 DPLILHTPTGRLINYIEDEEHGVRLFWQPPLKEGQ 541 (873)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (873)
=|+++..|.+- ..++.....|.|-|.||...+-
T Consensus 4 PP~~~~~P~~p--~~~~~~~~~i~v~W~pp~~~~~ 36 (106)
T d1cd9b2 4 PPMLQALDIGP--DVVSHQPGCLWLSWKPWKPSEY 36 (106)
T ss_dssp CCEEEECCC---------CCSCEEEEEECCGGGTT
T ss_pred CCCCCCCCCCC--eEecCCCCEEEEEEcCcccCCc
Confidence 36777777775 5667788889999999976654
No 8
>d2hg7a1 d.186.2.1 (A:1-60) Phage-like element PbsX protein XkdW {Bacillus subtilis [TaxId: 1423]}
Probab=6.56 E-value=67 Score=25.30 Aligned_cols=18 Identities=44% Similarity=0.892 Sum_probs=13.5
Q ss_pred CCCCCCChhhhhhhcccc
Q 002855 463 SPLRIPMPAELEHWWEKE 480 (873)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~ 480 (873)
...-+|--+||+.||++-
T Consensus 36 l~aP~PTe~EL~~~w~e~ 53 (60)
T d2hg7a1 36 LRAPLPTQAELETWWEEL 53 (60)
T ss_dssp SSSCCCCHHHHHHHHHHH
T ss_pred cCCCCCcHHHHHHHHHHH
Confidence 444567779999999863
No 9
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.58 E-value=4.9e+02 Score=21.56 Aligned_cols=61 Identities=11% Similarity=0.172 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHhcc-hhhhhccccccCCCccccc
Q 002855 602 KLQLYEKELELIEAE-LCLEEAIEEMDEELKKREEEEEKKAELG-LEEEENLSALSSQPEKATA 663 (873)
Q Consensus 602 ~~~~~~~~le~~e~e-~~le~a~e~md~~l~~~e~eee~k~e~~-l~~e~~~~~~~~~~~~~~a 663 (873)
+.+.+++||+.++++ ..|.+-|..|..+|+.-- +++...+++ +..+|..+...=+++-+.|
T Consensus 2 r~~~L~~El~~L~~~E~~LD~li~~~~~~L~~lt-ed~~n~k~ayVT~~Di~~i~~f~~~tvia 64 (101)
T d2azeb1 2 RLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLS-EDTDSQRLAYVTCQDLRSIADPAEQMVMV 64 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHCEEEHHHHHTTSCTTTEEEEE
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hchhhccCCccCHHHHhhCCCcccceEEE
Confidence 345678888888776 789999999999998743 445566676 4555444434444555554
No 10
>d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.42 E-value=2.1e+02 Score=21.69 Aligned_cols=22 Identities=5% Similarity=0.130 Sum_probs=15.4
Q ss_pred ecccccceEEEecCCCCCCCCC
Q 002855 522 IEDEEHGVRLFWQPPLKEGQEP 543 (873)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~ 543 (873)
+.-..+-|+|-|+||-.-|..+
T Consensus 10 ~~~~~~sv~l~W~~p~~~~~~I 31 (93)
T d2vkwa2 10 MGEDGNSIKVNLIKQDDGGSPI 31 (93)
T ss_dssp ECTTSSCEEEEEECCCCTTSCC
T ss_pred EEcCCCEEEEEeeCCCCCcCce
Confidence 3445678999999996555543
Done!